BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1342 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Ta... 1819 0.0 UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 T... 1793 0.0 UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Ta... 1594 0.0 UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 T... 1561 0.0 UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Ta... 1557 0.0 UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 T... 1531 0.0 UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Ta... 1442 0.0 UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Ta... 1432 0.0 UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacter... 1420 0.0 UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria Re... 1412 0.0 UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 T... 1399 0.0 UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulf... 1379 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1239 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 1219 0.0 UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 T... 1187 0.0 UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax... 1149 0.0 UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Ta... 1143 0.0 UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Ta... 1137 0.0 UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Ta... 1132 0.0 UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria Re... 1104 0.0 UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus C... 1097 0.0 UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax... 1091 0.0 UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria Rep... 1029 0.0 UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Ta... 1013 0.0 UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria R... 1006 0.0 UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Ta... 977 0.0 UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Ta... 970 0.0 UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA po... 896 0.0 UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 T... 845 0.0 UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax... 842 0.0 UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 840 0.0 UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Ta... 836 0.0 UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira ... 829 0.0 UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Ta... 826 0.0 UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella ... 815 0.0 UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Ta... 776 0.0 UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Ta... 766 0.0 UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Ta... 752 0.0 UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax... 744 0.0 UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomac... 712 0.0 UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 T... 709 0.0 UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Ta... 708 0.0 UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Ta... 687 0.0 UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 686 0.0 UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 T... 684 0.0 UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 679 0.0 UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 T... 678 0.0 UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacter... 677 0.0 UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Ta... 674 0.0 UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculu... 670 0.0 UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcu... 669 0.0 UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 T... 656 0.0 UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=... 654 0.0 UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 T... 651 0.0 UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haem... 631 e-179 UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular o... 629 e-178 UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax... 623 e-176 UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax... 623 e-176 UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax... 620 e-175 UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax... 612 e-173 UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax... 592 e-167 UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Ta... 591 e-167 UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=A... 577 e-163 UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Ta... 567 e-159 UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax... 561 e-158 UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax... 543 e-152 UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax... 529 e-148 UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax... 524 e-146 UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax... 521 e-146 UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Ta... 521 e-146 UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain ... 519 e-145 UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Ta... 513 e-143 UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 511 e-142 UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Ta... 504 e-140 UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Ta... 497 e-138 UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae... 483 e-134 UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis sol... 475 e-132 UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas ... 470 e-130 UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax... 464 e-128 UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 ... 449 e-124 UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax... 449 e-124 UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 T... 442 e-122 UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax... 441 e-121 UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=... 434 e-119 UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 432 e-119 UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carte... 422 e-116 UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit ... 414 e-113 UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax... 413 e-113 UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax... 382 e-104 UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax... 374 e-101 UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-termi... 367 1e-99 UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=P... 362 8e-98 UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment... 355 9e-96 UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-termi... 354 2e-95 UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 ... 347 2e-93 UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas... 322 6e-86 UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-termi... 320 3e-85 UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogon... 310 2e-82 UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Ta... 303 3e-80 UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=P... 285 7e-75 UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psych... 275 9e-72 UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorell... 272 8e-71 UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunalie... 268 2e-69 UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella s... 264 2e-68 UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-termi... 262 5e-68 UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomona... 262 7e-68 UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-termi... 262 7e-68 UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella t... 261 1e-67 UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-termi... 256 5e-66 UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax... 253 4e-65 UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax... 251 1e-64 UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=... 248 1e-63 UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium c... 246 4e-63 UniRef50_C6H0E8 RNA polymerase subunit B (Fragment) n=1 Tax=Acin... 246 4e-63 UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix s... 236 5e-60 UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Ta... 235 1e-59 UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=N... 231 1e-58 UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax... 214 3e-53 UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax... 211 2e-52 UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Ta... 204 2e-50 UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=F... 201 2e-49 UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hyp... 200 4e-49 UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular org... 182 1e-43 UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyan... 179 8e-43 UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-termi... 151 2e-34 UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpu... 150 3e-34 UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=... 144 3e-32 UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides ... 141 1e-31 UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=A... 135 8e-30 UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax... 134 2e-29 UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=... 130 2e-28 UniRef50_Q1KS34 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 130 3e-28 UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeo... 130 4e-28 UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeot... 130 5e-28 UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 129 6e-28 UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 ... 129 8e-28 UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 ... 128 2e-27 UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi... 128 2e-27 UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax... 127 3e-27 UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 126 7e-27 UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga bre... 126 7e-27 UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora ... 125 1e-26 UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 124 2e-26 UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepI... 124 3e-26 UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 124 3e-26 UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota ... 123 5e-26 UniRef50_P41187 DNA-directed RNA polymerase subunit beta (Fragme... 122 7e-26 UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 122 7e-26 UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax... 122 8e-26 UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 122 9e-26 UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota Re... 122 1e-25 UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (... 121 2e-25 UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 120 5e-25 UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium R... 119 1e-24 UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit ... 118 2e-24 UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomyce... 117 2e-24 UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 117 3e-24 UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplant... 117 3e-24 UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 116 5e-24 UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 116 5e-24 UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora l... 115 8e-24 UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 ... 115 1e-23 UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata Re... 115 1e-23 UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota R... 115 1e-23 UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata Re... 115 1e-23 UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylu... 115 2e-23 UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas R... 114 2e-23 UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 114 2e-23 UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 114 2e-23 UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporid... 114 2e-23 UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q... 114 3e-23 UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 114 3e-23 UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putat... 114 3e-23 UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus Re... 113 4e-23 UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 ... 113 6e-23 UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta ... 112 8e-23 UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit R... 111 2e-22 UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus... 111 2e-22 UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota ... 111 2e-22 UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular org... 111 2e-22 UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 T... 111 2e-22 UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota R... 110 3e-22 UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophy... 110 5e-22 UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 109 8e-22 UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyc... 109 8e-22 UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=I... 109 9e-22 UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=45... 108 1e-21 UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=12... 108 2e-21 UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 107 3e-21 UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 107 3e-21 UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 107 4e-21 UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota R... 107 4e-21 UniRef50_Q8KRK0 RpoB protein (Fragment) n=1 Tax=Pediococcus pent... 106 6e-21 UniRef50_C0GNU6 RNA polymerase Rpb2 domain 6 n=1 Tax=Desulfonatr... 106 7e-21 UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophy... 106 7e-21 UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum... 106 7e-21 UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia ... 106 8e-21 UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus ma... 106 8e-21 UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota R... 105 1e-20 UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomona... 105 1e-20 UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 105 1e-20 UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 105 1e-20 UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 T... 105 1e-20 UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 105 1e-20 UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 105 1e-20 UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 105 2e-20 UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 105 2e-20 UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n... 105 2e-20 UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta ... 105 2e-20 UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenop... 104 3e-20 UniRef50_Q48975 DNA-directed RNA polymerase (Beta) (Fragment) n=... 103 3e-20 UniRef50_P42487 DNA-directed RNA polymerase subunit 2 n=7 Tax=Af... 103 4e-20 UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitoz... 103 7e-20 UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 101 2e-19 UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 100 3e-19 UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia inte... 100 3e-19 UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 100 4e-19 UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 100 5e-19 UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomat... 100 7e-19 UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenop... 100 7e-19 UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 99 8e-19 UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious s... 98 2e-18 UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobu... 98 2e-18 UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=E... 97 5e-18 UniRef50_UPI0001C41F1A DNA-directed RNA polymerase subunit B''''... 97 6e-18 UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 96 7e-18 UniRef50_D2EG08 RNA polymerase Rpb2 domain 6 n=1 Tax=Candidatus ... 96 1e-17 UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 96 1e-17 UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative ... 96 1e-17 UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 95 2e-17 UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis ... 94 3e-17 UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 94 5e-17 UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit ... 93 6e-17 UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax... 93 7e-17 UniRef50_P15352 DNA-directed RNA polymerase subunit B'' n=25 Tax... 93 8e-17 UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa pol... 91 2e-16 UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 91 3e-16 UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrel... 91 4e-16 UniRef50_O27123 DNA-directed RNA polymerase subunit B'' n=19 Tax... 90 6e-16 UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide ... 88 3e-15 UniRef50_UPI0001742D24 DNA-directed RNA polymerase beta chain n=... 87 4e-15 UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA PO... 87 5e-15 UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabdit... 85 2e-14 UniRef50_Q3LW79 Second-largest subunit of RNA polymerase III n=1... 85 2e-14 UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit ... 85 2e-14 UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 83 6e-14 UniRef50_B9RDB2 DNA-directed RNA polymerase beta chain, putative... 83 9e-14 UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit ... 82 1e-13 UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Ac... 82 1e-13 UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 82 1e-13 >UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Tax=Neisseriaceae RepID=RPOB_NEIG1 Length = 1392 Score = 1819 bits (4712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 896/1393 (64%), Positives = 1100/1393 (78%), Gaps = 56/1393 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ----DPEGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR VL+VP+LL+ Q+DS+ KF++ D GL+AAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + L++V Y LGEP+FD+ ECQ+RG+TY+APLR ++RLVI ++EA + TVK+ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKE 120 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 ++E EVYMGEIPLMT +G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 121 VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 180 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDFEFDPKD L+ RIDRRRK+P TI+L+AL Y EQILD+F++K F + N Sbjct: 181 IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNG 240 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +Q +LV RL+GETA DI + G V V KG+RITA++IR + + ++V E + GK Sbjct: 241 VQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQESLLGK 300 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D ID TGE++ +AN E++ +LLAK +G K I TL+ N+LD G YIS TLR D Sbjct: 301 ALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDE 360 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS------- 408 T R +A V IYRMMRPGEPPT EA E LF LFFSED YDLS VGRMKFN Sbjct: 361 TAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKLS 420 Query: 409 ----------LLREEIEGSG-----ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 LL E G+ +LS +DI+ + L+++RNG GEVDDIDHLGNRR+ Sbjct: 421 EAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV 480 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 RSVGE+ ENQFR GL RVERAVKERL+ + + LMP D+INAKP+SAA+KEFFGSSQLSQ Sbjct: 481 RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ 540 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN Sbjct: 541 FMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 600 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 SLSVYA+TN+YGFLETPYR+V DG VT+EI YLSAIEEG YVIAQAN++LD +G+ + DL Sbjct: 601 SLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDL 660 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 VTCR KGE+ + + D+V YMDV+T QVVSV ASLIPFLEHDDANRALMGANMQRQAVP L Sbjct: 661 VTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL 720 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 R +KP+VGTG+ER+VAVDS VA+RGGVV+YVDA+R+VI+V++DE GE G+DIYNL Sbjct: 721 RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNL 780 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 K+TRSNQ+T INQ P V G+ ++RGD++ADG STDLGELALGQNM +AFMPWNGYN+E Sbjct: 781 VKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYE 840 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 DSIL+SE+V +DR+T+IHI+EL V+RDTKLG E+IT DIPN+ E ++LDESGIVYI Sbjct: 841 DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI 900 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GAEV GD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLR+P G+SGTVIDVQV Sbjct: 901 GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV 960 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA----GG------ 983 FTR+G+++DKRA I + +LK+ + DL+++L+I + F RI ++V GG Sbjct: 961 FTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLTK 1020 Query: 984 ---VEAEKLDKLP-RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + E L LP R W ++ LTDE+ QLE + + + E ++ E K++K+TQG Sbjct: 1021 GSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKKLTQG 1080 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L PGV K+VKV++A+KRR+Q GDKMAGRHGNKGV+S+I P+EDMPY +G PVDIVLN Sbjct: 1081 DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN 1140 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQILE HLG AAKGIG++I+ MLK++++ +LREF+ + Y+ +K Sbjct: 1141 PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGELREFLNKLYNGSG---KKE 1197 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL------------KLGDLPTS 1207 DL + +DEE++ LA NLRKG A+PVFDGAKE+EI+E+L KLG + Sbjct: 1198 DLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGFNDSK 1257 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 QI LYDGR+GE F+R VTVG M+ LKL+HLVD+KMHARSTG YSLVTQQPLGGKAQFGG Sbjct: 1258 TQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGG 1317 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY+NIV G H+++ GMPESFNVL+ Sbjct: 1318 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLV 1377 Query: 1328 KEIRSLGINIELE 1340 KEIRSLG++I+LE Sbjct: 1378 KEIRSLGLDIDLE 1390 >UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 Tax=Bacteria RepID=RPOB_METPP Length = 1375 Score = 1793 bits (4644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 877/1369 (64%), Positives = 1072/1369 (78%), Gaps = 33/1369 (2%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFP 58 YSYTE+KRIRK FGKR VL VPYLL++Q DS+ F+++D Q GL+AAF S FP Sbjct: 7 YSYTERKRIRKSFGKRENVLGVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAAFLSAFP 66 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG---TVK 115 I S++G E++Y+ + + +P FD +ECQ RG+TY+A +R KL+++IY+RE VK Sbjct: 67 IVSHNGFVEMKYIEFNMAKPAFDTRECQQRGLTYAAAVRAKLQMIIYDRETSTSQSKVVK 126 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +IKEQEVYMGE+PLMTD G+F++NGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++AR Sbjct: 127 EIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 186 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 IIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ EQIL FF F + D+ Sbjct: 187 IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDNFRLMDS 246 Query: 236 KLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 QME V +RLRGE A FD+ + G V VEK +RITARH R LE I VP +++ G Sbjct: 247 GAQMEFVADRLRGEIARFDLTDKAGAVIVEKDKRITARHTRALEASGTSFISVPEDFLVG 306 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 +V+AK+ +D TGE+I AN EL+ LL KL +G K I+ L+TN+LD G YIS+TL D Sbjct: 307 RVLAKNMVDADTGEIIAKANDELTDSLLKKLRTAGIKDIQCLYTNELDMGAYISQTLASD 366 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 T D L+A V IYRMMRPGEPPT +A ++LF LF+SED YDLS VGRMKFN + R+ Sbjct: 367 ETADELAARVAIYRMMRPGEPPTEDAVQALFNRLFYSEDTYDLSRVGRMKFNARVGRDTA 426 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 EG +L+ DDI+DV+K L+++RNG+GEVDDIDHLGNRR+R VGE+AENQ+R GL R+E+A Sbjct: 427 EGRMVLANDDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLARIEKA 486 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 VKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFMDQ NPLSEITHKRR+SALG Sbjct: 487 VKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALG 546 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL++YAQ NEYGFLETPYR+V Sbjct: 547 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRRV 606 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 D VTD+I YLSAIEEG YVIAQAN+ LD++G +++LV+ R GES L S +++ YMD Sbjct: 607 IDSKVTDQIDYLSAIEEGKYVIAQANAGLDKDGKLIDELVSARESGESVLTSPERIQYMD 666 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 V+ Q+VSV ASL+PFLEHDDANRALMGANMQRQAVP LR +K VGTG+ER AVDSG Sbjct: 667 VAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGVERVSAVDSGT 726 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 AKRGGVV Y+D +RIVI+VN+ E GE G+DIYNL KY RSNQNT I+Q P V G Sbjct: 727 VVTAKRGGVVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVQRG 786 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V GDV+ADG STD+GELALGQNM VAFMPWNGYNFEDSIL+SERVV +DR+T+IHI+ Sbjct: 787 DQVGAGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTSIHIE 846 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 EL ++RDTKLG EEIT DIPN+ E L +LDESGIVYIGAEV GD+LVGKVTPKGET Sbjct: 847 ELVVMARDTKLGSEEITRDIPNLSEQQLGRLDESGIVYIGAEVNPGDVLVGKVTPKGETT 906 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 LTPEEKLLRAIFGEKASDVKD+SLRV G +GTVIDVQVFTR+G+++DKRA +I + +LK Sbjct: 907 LTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQIIDDELK 966 Query: 955 QAKKDLSEELQILEAGLFSRIRAVL-----------VAGGVEAEK--LDKLPRDRWLELG 1001 + + DL+++L+I+EA F RI +L +A G +K L + + W ++ Sbjct: 967 RFRLDLNDQLRIVEADAFDRIEKLLAGKTANGGPNKLAKGTPIDKAYLASVDKYHWFDIR 1026 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 D++ NQLE + ++ +H F+ E KR+K+TQGD+L GVLK+VKVYLAVKRR+Q Sbjct: 1027 PADDDIANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQ 1086 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 PGDKMAGRHGNKGV+SKI P+EDMPY +GTP DIVLNPLGVPSRMN+GQ+LE HLG AA Sbjct: 1087 PGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGWAA 1146 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 KGIG +I +L+Q+ ++A +R+F+ Y+ + L+ SD E+ +A NL +G+P Sbjct: 1147 KGIGQRIGDLLQQEAKIADVRKFLDELYNKSGGKSE--GLNGLSDAEITEMATNLAQGVP 1204 Query: 1182 IATPVFDGAKEAEIKELLKL----------GDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 ATPVFDGA E EI+ ++ L G T Q L+DGRTG+ FERPVTVGYM+ Sbjct: 1205 FATPVFDGATEEEIRAMMHLAYPDEIAAAKGLNATRTQATLHDGRTGDAFERPVTVGYMH 1264 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEML Sbjct: 1265 VLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEML 1324 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 TVKSDDVNGRTK+Y++IV G H +E GMPESFNVL+KEIRSLGI+IELE Sbjct: 1325 TVKSDDVNGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGIDIELE 1373 >UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Tax=cellular organisms RepID=RPOB_NOVAD Length = 1392 Score = 1594 bits (4127), Expect = 0.0, Method: Compositional matrix adjust. Identities = 791/1364 (57%), Positives = 1022/1364 (74%), Gaps = 37/1364 (2%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY--GLEAAFRSVFPIQSYSGN 65 KKRIRK FG +V+ +P L+ +Q +S+++F+ DP Y GLE RSVFPIQ ++G Sbjct: 17 KKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDPATGYVSGLEKTLRSVFPIQDFAGT 76 Query: 66 SEL---QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT--VKDIKEQ 120 + L + Y L P +DV EC+ RG+TY+AP++V L+L +E +A T + DIKEQ Sbjct: 77 ASLDIKEKDGYVLESPKYDVNECRQRGITYAAPMKVTLKLATFEVDAETETKSLIDIKEQ 136 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG+IPLMT+NGTF INGTERVIVSQ+HRSPGV FD D+GKTHSSGK L+ AR+IPYR Sbjct: 137 DVYMGDIPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIPYR 196 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 GSWLDFEFD KD + VRIDR+RKLP T +L AL E IL F++ V + + ++ Sbjct: 197 GSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLGDEDILHHFYDTVTWARAEGGWKVP 256 Query: 241 LVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 V E+ RG +FDI +G+V G++I+ R + KD ++ + +P E I G+ A Sbjct: 257 FVLEQWRGSKPAFDIVDAKSGEVIFPAGQKISPRAANKAAKDGLEALLIPTEEIFGRYAA 316 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 +D IDESTG + A E+S + L L ++G ++ L + + GP+I TL+ D D Sbjct: 317 RDLIDESTGRIWIEAGDEVSPENLDLLDKAGIDNLDLLDIDHISTGPWIRNTLKADKAPD 376 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R AL +IYR+MRPGEPPTRE AE+LF+ LFF DRYDLSAVGR+K N L + + Sbjct: 377 RDHALADIYRVMRPGEPPTRETAEALFDGLFFDGDRYDLSAVGRVKLNMRLGLDCPDTVT 436 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 L DDI+ V+K+L+++++GKGEVDDID+LGNRR+RSVGE+ ENQ+RVGL+R+ERAVKER Sbjct: 437 TLRTDDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 496 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S D+ T+MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGL Sbjct: 497 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 556 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 TRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLS +A+ N+YGF+ETPYRKV DG Sbjct: 557 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVVDGK 616 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT ++ YLSA+EE + +AQA++ L +G FVE+LV+ R GE + RD V MDVS + Sbjct: 617 VTKDVIYLSAMEEQKHTVAQASAELTADGSFVEELVSARQNGEFVMAPRDTVTLMDVSPK 676 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP ++AD P VGTGME VA DSG A Sbjct: 677 QLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKADAPFVGTGMEETVARDSGAAISA 736 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 R GVV VDA+RIVI+ + D + PG++G+DIY L K+ RSNQ+TCINQ P V +G+ +E Sbjct: 737 LRSGVVDQVDATRIVIRASGD-IEPGQSGVDIYRLQKFERSNQSTCINQRPLVKVGDLIE 795 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ED FT+IHI+E Sbjct: 796 KGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVFTSIHIEEFEV 855 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDILVGK+TPKGE+ +TPE Sbjct: 856 MARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPMTPE 915 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 EKLLRAIFGEKASDV+D+SLR+P GV+GT++DV+VF R G+E D R I+ ++++ K Sbjct: 916 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIEIDDRTRAIQNEEIERLAK 975 Query: 959 DLSEELQILEAGLFSRIRAVL-----------VAGGVEAEK--LDKLPRDRWLELGLTDE 1005 D +E IL F+R++ +L + GVE ++ L + R W + + D+ Sbjct: 976 DREDERAILNRATFNRLKDMLLGQVAAAAPKGIKKGVEIDEQVLADVERHEWWKFAVADD 1035 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 +Q QLE + QYD ++K E ++ K+ +GD+LAPGVLK+VKV++AVKR++QPGDK Sbjct: 1036 ARQQQLEAVKAQYDTAVKAIQEKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQPGDK 1095 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKG+IS+I P EDMP+ E+GTPVD VLNPLGVPSRMN+GQI ETHLG AA+G+G Sbjct: 1096 MAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAARGLG 1155 Query: 1126 DKINAMLKQQQEV----------AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 +I L +E +RE ++ Y G + ++D +DE+++ A++ Sbjct: 1156 KRIGEALDAWREANPNPEAGQPPEAVRELLKEIY--GDNYAAEIDAR--NDEQIIDFAQS 1211 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 +R G+P+ +PVFDGA E ++ ++L+L L SGQ+ L+DGRTG+ F+R VTVG Y+LKL Sbjct: 1212 VRLGVPMGSPVFDGAVEKDVTDMLRLAGLDESGQVTLFDGRTGDAFDRKVTVGMKYVLKL 1271 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 +HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAYTLQEMLTVKS Sbjct: 1272 HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKS 1331 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 DDV GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1332 DDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1375 >UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 Tax=Bacteria RepID=RPOB_MYXXD Length = 1408 Score = 1561 bits (4042), Expect = 0.0, Method: Compositional matrix adjust. Identities = 784/1379 (56%), Positives = 1024/1379 (74%), Gaps = 60/1379 (4%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGN 65 R+RK F K +++D+P L++IQ S++KF++ D GL+ F+SVFPI+ ++ Sbjct: 10 RVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSVFPIRDFNET 69 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TVKDIKEQEVY 123 S L++VSY L P +DV EC RG+TYSAP++V +RLV+++++ G +++D+KEQEVY Sbjct: 70 SSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVY 129 Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183 GEIPLMT NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNARIIPYRGSW Sbjct: 130 FGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNARIIPYRGSW 189 Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNY--------------TTEQILDLFFE-KV 228 +DFEFD KD L+VRIDRRRKLPAT+++RAL +TE+IL+ ++ + Sbjct: 190 IDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEILNYYYATET 249 Query: 229 IF----EIRDNKLQMELVPERLRGETASFDIEA-NGKVYVEKGRRITARHIRQLEKDDVK 283 I+ E + +++EL+P G+ A+ DI+A G++ V+K R+ T I++LE +K Sbjct: 250 IYLHSAEEFEKSVELELLP----GQRATRDIKAKTGELIVKKNRKFTRAAIKKLEAAKMK 305 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + + + + KV A D ++E+ G ++ N E++ + + +L + G K + LF ++L+ Sbjct: 306 TLPIDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFIDNLNV 365 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 GPY+ ETL +D +++EIYR +RPG+PPT E A +LF NLFF+ +RYDLS VGR+ Sbjct: 366 GPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLSKVGRL 425 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K N EE IL+K DI++V++ LID++NGKG +DDIDHLGNRR+R+VGE+ ENQ Sbjct: 426 KLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQ 485 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 +R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFMDQ NPLSE Sbjct: 486 YRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSE 545 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 +THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SLS YA+ NE Sbjct: 546 VTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARVNE 605 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 +GF+ETPYRKV GVVT+++ + SA+EE + IAQAN+ D++G F LV+ R GE Sbjct: 606 FGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRRGGEFV 665 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + VD MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP LR PLVGTG Sbjct: 666 QARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAPLVGTG 725 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLTKYTRSNQN 762 +E VA DSGVT VA+R G+V+ VDA RIV+K + + + +DIYNL KY RSNQN Sbjct: 726 IESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQRSNQN 785 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 TC+NQ P +S G+ V +GDV+ADGP+T+ GELALGQN+ VAFMPW GYNFEDSIL+SER+ Sbjct: 786 TCLNQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSILISERI 845 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 +++D FT+IHI+E C++RDTKLG EEIT DIPNVGE AL LDESGI+ IGAEV GD+ Sbjct: 846 LKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEVKPGDV 905 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 LVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GV GTVI+ +VF+R GVEKD Sbjct: 906 LVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRKGVEKD 965 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA---------------- 986 +RA +IE M+ + KD ++E+++L+ F RIR ++ V+ Sbjct: 966 ERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILLKKGDI 1025 Query: 987 ---EKLDKLPRDRWLELGL---TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 E L +P W E+ + D ++ L L E + +K F +K+ +I +GD Sbjct: 1026 LDDELLSTVPYKYWGEISVGDPLDSRLRDILRNLEETKEAVKLAFGEKIA----RIKKGD 1081 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 +L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S+I P EDMPY E+G PVDIVLNP Sbjct: 1082 ELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVLNP 1141 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 LGVPSRMNIGQILETHLG AAKG G+ + ++ ++E ++ Y +D Sbjct: 1142 LGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIY---SDPAFGEF 1198 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 L DEE+ +L ++G+ +ATPVFDGA+E EI LL G LP SGQ+ L+DGRTGE Sbjct: 1199 LDKLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTGEP 1258 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWA+EA Sbjct: 1259 FDQNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEA 1318 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAAYTLQE LTVKSDDV GRT+MY+ IV G++ +E G+PESFNVLLKE++SL +++EL Sbjct: 1319 YGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVEL 1377 >UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Tax=Bacteria RepID=RPOB_ANAD2 Length = 1422 Score = 1557 bits (4032), Expect = 0.0, Method: Compositional matrix adjust. Identities = 788/1379 (57%), Positives = 1034/1379 (74%), Gaps = 52/1379 (3%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD--PEGQ--YGLEAAFRSVFPIQSYSGN 65 RIR++FGK ++ ++P L++IQ S+ KF++ D PE + GL+ F+SVFPI+ ++ Sbjct: 10 RIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSVFPIKDFNET 69 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TVKDIKEQEVY 123 S L++VSY L +P +DV EC RG+TYSAP++V +RLV+++++ G +++D+KEQEVY Sbjct: 70 SSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVY 129 Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183 GEIPLMT+NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNARIIPYRGSW Sbjct: 130 FGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNARIIPYRGSW 189 Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYT--------------TEQILDLFFEKVI 229 +DFEFD KD L+VRIDRRRKLPAT++LRAL T E+IL +++ Sbjct: 190 IDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEILKYYYDTET 249 Query: 230 FEIR-DNKLQMELVPERLRGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 I K + +LVP+ L+G+ A+ DI + +V V+K R+ T I++L +K + Sbjct: 250 IRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKLVAAKMKSLP 309 Query: 287 VPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 V E + K+ A+D +DE+TGE++ N E++ + +L + + LF ++L+ P Sbjct: 310 VEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLFIDNLNILPA 369 Query: 347 ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + +TL D + A++EIYR +RPG+PPT E A +LF NLFF+ +RYDLS VGR+K N Sbjct: 370 LRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDLSKVGRLKLN 429 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAENQF 464 EE + +L+K DI++V++ LID++NGK +VDDIDHLGNRR+R+VGE+ ENQ+ Sbjct: 430 YKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRAVGELLENQY 489 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFMDQ NPLSE+ Sbjct: 490 RIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEV 549 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLI SLS YA+ NEY Sbjct: 550 THKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASLSTYARVNEY 609 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 GF+ETPYRKV G VTDE+ + SA+EE ++IAQAN+ +D++G+F E V CR +GE Sbjct: 610 GFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVWCRKEGEYIY 669 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 D+VD MDVS Q+VSV ASL+PFLE+DDANRALMG+NMQRQAVP LR PLVGTG+ Sbjct: 670 VRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRTQAPLVGTGI 729 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG-IDIYNLTKYTRSNQNT 763 E VA DSGVT VAKR GVVQ VDASRIV+K + A +DIYNL KY RSNQNT Sbjct: 730 EAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLIKYQRSNQNT 789 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 CINQ P V GE V++GDV+ADGP+T++GELALGQN+ VAFMPW GYNFEDSIL+SER++ Sbjct: 790 CINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFEDSILLSERLI 849 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 +ED FT++HI+E CV+RDTKLG EEIT DIPNVGE AL LDESGI+ IGAEV GDIL Sbjct: 850 KEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEVKPGDIL 909 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 VGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GVSGTVI+ +VF+R GVEKD+ Sbjct: 910 VGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVFSRKGVEKDE 969 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE---------------- 987 RA IEEM+ + KD ++E++I++ F +IR +L+ V A Sbjct: 970 RAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGEQLLKKGDVL 1029 Query: 988 ---KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 LD +P+ W E+ + + Q+ ++ E ++E K + K ++ +GD+L P Sbjct: 1030 DDALLDTVPQRYWGEIAVAG-DVQDLARKIIENFEEQKELVKLLFGEKIGRLKKGDELPP 1088 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S++ P ED+PY E+GTPVDIVLNPLGVP Sbjct: 1089 GVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDIVLNPLGVP 1148 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY--DLGADVRQKVD-- 1160 SRMN+GQILETHLG AA+ +G ++ M++++ LR+ ++ A+ G V +++ Sbjct: 1149 SRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGPVGERLAAL 1208 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + ++E+ +L + LR+GM +ATPVFDGA+E E+K L++ G + Q L+DGRTGE Sbjct: 1209 IEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEGS--ATLQSILFDGRTGEP 1266 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWA+EA Sbjct: 1267 FDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEA 1326 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAAY+LQE LTVKSDDV GRT+MY+ IV G + +E G+PESFNVL+KE++SL +++EL Sbjct: 1327 YGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQSLALDVEL 1385 >UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 Tax=Bacteria RepID=RPOB_SPHWW Length = 1455 Score = 1531 bits (3965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 785/1444 (54%), Positives = 1011/1444 (70%), Gaps = 125/1444 (8%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY--GLEAAFRSVFPIQSYS 63 T KKRIRK FG +V+ +P L+ +Q +S+++F+ P Y GLE RSVFPI+ ++ Sbjct: 9 TAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRSVFPIRDFA 68 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT--VKDIKEQE 121 G +EL +V Y L +P +D EC+ RG+TY+AP+RV LRL+++E + T V DIKEQ+ Sbjct: 69 GTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRSVLDIKEQD 128 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 VYMG++PLMT+NGTF+INGTERVIVSQ+HRSPGV FD D+GKTH+SGK L+ AR+IPYRG Sbjct: 129 VYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVIPYRG 188 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD------- 234 SWLDFEFD KD + VRIDR+RKLP T +LRAL + ++++ +K FE D Sbjct: 189 SWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALG---DAVIEVNPDKGKFEAGDIVAISGV 245 Query: 235 -NKLQMELVPERLRG-ETASFDIEANGKVYVEKGRRI----------------------T 270 +++ V RL E + I G + +G +I T Sbjct: 246 NRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILNYFYRT 305 Query: 271 ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG- 329 R +R V + E G+ A D ++ TGE++ A ++S K + G Sbjct: 306 QRFVRGENGWKVPFV---AENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAGKDGL 362 Query: 330 ------------------------------------HKRIETLFTNDLDH---------- 343 + +E L DH Sbjct: 363 ETLLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVDLLDIDHVS 422 Query: 344 -GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 GP+I TL+ D DR AL EIYR+MRPGEPPT+E AE+LF LFF +RYDLSAVGR Sbjct: 423 TGPWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAVGR 482 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 +K N L + + L +DI+ V+K L+D+++GKGE+DDID+LGNRR+RSVGE+ EN Sbjct: 483 VKLNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLEN 542 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 Q+RVGL+R+ERAVKER+S D+ T MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLS Sbjct: 543 QYRVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLS 602 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSL+ +++ N Sbjct: 603 EVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVN 662 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 +YGF+ETPYRK+ DG VT+E+ YLSA+EE + IAQAN+ LD EG FVEDL++ R GE Sbjct: 663 KYGFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISAREAGEF 722 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 + RD V MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +RA+ P VGT Sbjct: 723 LMAPRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGT 782 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 GME VA DSG AKR G+V VDA+RIV++ + G++G+DIY L K+ RSNQ+ Sbjct: 783 GMEETVARDSGAAIAAKRSGIVDQVDATRIVVRAT-GAVDAGKSGVDIYTLMKFQRSNQS 841 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 TCINQ P V +G+ V GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+ Sbjct: 842 TCINQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERI 901 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 V++D FT+IHI E ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDI Sbjct: 902 VKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDI 961 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 L GK+TPKGE+ +TPEEKLLRAIFGEKASDV+D+SLR+P GVSGTV+DV+VF R G++KD Sbjct: 962 LCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDKD 1021 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV-------------AGGVEAEKL 989 +RA+ IE ++ + KD +E IL ++R++ +L+ + E L Sbjct: 1022 ERAMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKGSEINEELL 1081 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 ++ + W + + D+ +Q LE + QYD+ KK E + K+ +GD+L PGVLK+ Sbjct: 1082 AEVEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPGVLKM 1141 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 VKV++AVKR++QPGDKMAGRHGNKGVIS+I P EDMP+ E+GTPVDIVLNPLGVPSRMN+ Sbjct: 1142 VKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNV 1201 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQE--------------VAKLREFIQRAYDLGADV 1155 GQI ETHLG AA+G+G ++ + L+ +E V +L+E + Y Sbjct: 1202 GQIFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEY------ 1255 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 D+ S ++++ +A L+ G+P+ATPVFDGA+EA++ E+L+ L SGQ+ L+DG Sbjct: 1256 --HADIEGRSTDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFDG 1313 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 RTG+QF+R VTVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1314 RTGDQFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV 1373 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 WAL+AYGAAYTLQEMLTVKSDDV GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+ Sbjct: 1374 WALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGL 1433 Query: 1336 NIEL 1339 N+EL Sbjct: 1434 NVEL 1437 >UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Tax=Proteobacteria RepID=RPOB_DESDA Length = 1378 Score = 1442 bits (3734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 737/1365 (53%), Positives = 960/1365 (70%), Gaps = 40/1365 (2%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD-PEGQY----GLEAAFRSVFPIQSYSG 64 ++ K FGK L +P+LL++Q+DS++KF+++ PE + GLE F +VFPI+ ++ Sbjct: 3 QLTKQFGKIKISLPIPHLLNLQIDSYEKFLQEGVPEAERRPDEGLEGVFHTVFPIEDFNK 62 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TVKDIKEQEV 122 + L++VSY +GEP +D EC +G+TY AP+R+K+RLV+Y+ + G T++DIKEQ++ Sbjct: 63 TASLEFVSYEIGEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQDI 122 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 Y G +PLMT+ GTF+INGTERVIV+QL RSPG+ F+ D GKTH+S KVLY+ R+IP RGS Sbjct: 123 YFGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGS 182 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD-NKLQMEL 241 WLDF+FD KD L+VRIDRRRK+PATI+ +A+ + EQILD F+ + + + + N + E+ Sbjct: 183 WLDFDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYTQETYRLEERNTIFWEV 242 Query: 242 VPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 E R + A DI ++ G V V+ G+ IT R R + + ++ IE+ + + G +A D Sbjct: 243 RKELYRKDNAYADIVDSEGNVIVKAGKPITKRSWRLICEAGIEAIEMRPDTLDGMFLAGD 302 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 D TGEL+ A E++ LL ++ +G R+ L T D I +TL +D D+L Sbjct: 303 VADPKTGELLAEAADEITPGLLDRMRDAGINRVSVLHTKGNDTSSSIRDTLMLDRIPDQL 362 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 A EIYR +RP PPT E A S F+NLF + D YDLS VGR K N+ L +E L Sbjct: 363 KAQEEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLSLDEPSDLRTL 422 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 + +DI+ +K L+ +++ G DDIDHLGNRR+R VGE+ ENQ+R+GLVR+ERA+KER+S Sbjct: 423 TDNDILTAIKVLVHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMS 482 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 L ++ TLMP D+IN KP++A +KEFFG+SQLSQFMDQ N LSE+THKRR+SALGPGGLTR Sbjct: 483 LQEISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTR 542 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 ERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N+YGF+ETPY V +G VT Sbjct: 543 ERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYHVVREGRVT 602 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 DE+ +L A EG+ V+AQAN+ LDE+G+ V++ VT R KGE + RD+V MD+S Q+ Sbjct: 603 DEVLHLDASREGDQVVAQANALLDEQGNLVDEFVTVRVKGEVEMRHRDEVTLMDISPSQM 662 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VS+ A+LIPFLEHDDANRALMG+NMQRQAVP LR++KPLVGTGME VA DSG VA Sbjct: 663 VSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVAPA 722 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G ++YVDA RIV+ E ++Y + G+ Y+L KY +SNQN+C Q P G+ V++G Sbjct: 723 DGKIEYVDADRIVVAY-EGDVYKKQGGVRAYDLLKYHKSNQNSCFGQKPSCHPGQIVKKG 781 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +LADGP D GELALG+N+ VAFMPW GYN+EDSIL+SER V+ED FT+IHI+E V+ Sbjct: 782 QILADGPGIDDGELALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVVA 841 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 RDTKLGPEEIT DIPNV E L LDESGI+ IGA V DILVGK+TPKGETQLTPEEK Sbjct: 842 RDTKLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEEK 901 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 LLRAIFGEKA DVK++SL+VP GV GT+IDV+VF R EKD R L IE + Sbjct: 902 LLRAIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIEGHDTAVLDQKE 961 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL------GLTDE--------- 1005 ++ ++ L R RA+L+ V + LP + E+ LT+E Sbjct: 962 ADHMR----ALTDRTRALLIPHVVGKQVAASLPGKKKGEVLVEAGAALTEEMLASLPVKK 1017 Query: 1006 --------EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 E + + ++ + YD+ ++KR K+T+GDDL PGV+K+VKV++A+K Sbjct: 1018 LSGLFKSKEVNDAVAEILKPYDQQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIK 1077 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R++ GDKMAGRHGNKGV+S I P EDMP+ +G PVDIVLNPLGVPSRMNIGQI+ETHL Sbjct: 1078 RKLSVGDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHL 1137 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G AK +G ++ +L + LR+ ++ + D+ VD DEE LR Sbjct: 1138 GWGAKELGRQLAELLDSGAAMQVLRDEVKSIFS-SDDINALVD--EMDDEEFKASVSKLR 1194 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 G+ TPVFDGA E EI ++ L G+ LYDGRTGE F+ VT G MYMLKL+H Sbjct: 1195 NGIVTKTPVFDGATEEEIWSWMERAGLANDGKTTLYDGRTGEAFKNRVTTGVMYMLKLHH 1254 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 LVD+K+HARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAY LQE LTVKSDD Sbjct: 1255 LVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDD 1314 Query: 1298 VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 V GR KMY+ IV G++ +E G+PESFNVL+KE+ SLG+N+ L E Sbjct: 1315 VTGRVKMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQE 1359 >UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Tax=Bacteria RepID=RPOB_DESAH Length = 1401 Score = 1432 bits (3708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 727/1409 (51%), Positives = 967/1409 (68%), Gaps = 83/1409 (5%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD--PEGQ--YGLEAAFRSV 56 M S KRIRK+FG + +V+D+P L+ +Q SF++F++++ PE + G+ F+SV Sbjct: 1 MTGSLLASKRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTV 114 PI+ ++G S L+YVSY GE ++EC RG+TY P+ + +RLV+Y+ ++A ++ Sbjct: 61 LPIKDFTGTSSLEYVSYSFGETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVTSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +DIKEQE+Y G IPLMT GTF+INGTER +VSQLHRS GVFFD DKGK+HSSGK++Y A Sbjct: 121 RDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSGVFFDHDKGKSHSSGKIIYTA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIP RGSW+D E DPKD + +RIDRRRK P TI+ +A YT E IL F++K +D Sbjct: 181 RIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVKKD 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 L E P+ L+ ASFDI G+ V+KGR T R ++QL+ +K I + E I Sbjct: 241 GILFKEFNPDNLKRNRASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISEEDI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ A + T E++ A + ++L K++ +G L+ D + +TL Sbjct: 301 IGRGFATSVVHPETEEILAKAGSLIDPEVLEKIADAGITEFSILYV-DTYSSDSMRKTLA 359 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 VD R AL+EIYR +RPG P T E A+ ++LFF YDLS VGR+K N L Sbjct: 360 VDKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPAYYDLSNVGRLKMNHRLGMS 419 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L ++DI+ L+++++ +G VDDIDHLGNRR+R+VGE+ ENQ+R+GLVR+E Sbjct: 420 TGIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRME 479 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 RA+KER+S+ ++D +MP D++N KP+SA V+EFFG+SQLSQFMDQ NPLSE THKRR+SA Sbjct: 480 RAIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSA 539 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGLTRERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SL YA+ N++GF+ETPYR Sbjct: 540 LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYR 599 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 DGVV+ +I +LSA EE + IAQAN+ LD++GH + DLVT R GE + +++ +++ Sbjct: 600 IAKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDLVTSRVGGEFEMVAKNDIEF 659 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 MDVS Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +R++ PLVGTG+E VA DS Sbjct: 660 MDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVARDS 719 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 GV VA+ G+V VDA RIV+K E+ + + IY +K+ RSNQNTC N P V Sbjct: 720 GVAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRPIVK 779 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G+ V +G+V+ADGPST++GELALG+N+ VAFMPW GYN+EDSILVSER+V+E +T++H Sbjct: 780 KGDAVRKGEVIADGPSTEMGELALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYTSVH 839 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 ++E V+RDTKLG EEIT DIPN GE AL LD+SGI+ +GAEV GDILVGK+TPKGE Sbjct: 840 VEEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRLGAEVKPGDILVGKITPKGE 899 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 TQL+PEEKLLRAIFGEKA DVKD+SLRVP GV G V +VF+R G+ KD R IE+++ Sbjct: 900 TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIEDLE 959 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK----------LPRDRWLELGL 1002 +++ +KD +E++I+ + R+ +L ++A + R + + L Sbjct: 960 IEKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEGISL 1019 Query: 1003 TD-------------------EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 TD E+ + Q+++ E ++ +EK GDDL Sbjct: 1020 TDLMGLTVEDSSLTEMAHVILEKAETQIKKARENFNNQASRYEK-----------GDDLP 1068 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGVLK++K+ +A+KR + GDKMAGRHGNKGV+S+I P+ D+PY E+G VD+VLNPLGV Sbjct: 1069 PGVLKLIKINVAMKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVDMVLNPLGV 1128 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR---------------- 1147 PSRMN+GQILE HLG AA+G+G +I+ ++ +++ +LR I+R Sbjct: 1129 PSRMNVGQILEIHLGCAARGLGRQIDDLIYEKK-TDELRARIKRIFTTPLIKTGERANKD 1187 Query: 1148 --AYDLGADVR--------------QKVD-LSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 YD + Q VD + D E + A + G+ +ATPVFDGA Sbjct: 1188 KTHYDFSSHYTVEKSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGA 1247 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 E+EIK L+ L SGQ LYDGRTGE F++P+TVG MYMLKL+HLVDDK+HARS G Sbjct: 1248 AESEIKSLISYAGLDPSGQSTLYDGRTGEPFDKPITVGIMYMLKLHHLVDDKIHARSIGP 1307 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 YSLVTQQPLGGKAQFGGQR GEMEVWA+EAYGAA+ LQE +TVKSDD+ GRT+MY+ IV Sbjct: 1308 YSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTRMYEKIVK 1367 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 G + +EPGMPESF VL KE++SLG++I L Sbjct: 1368 GQNVLEPGMPESFRVLTKELQSLGLDINL 1396 >UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacteria RepID=A7BQQ8_9GAMM Length = 1118 Score = 1420 bits (3677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 713/1118 (63%), Positives = 848/1118 (75%), Gaps = 131/1118 (11%) Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 +R+D T L A +EIYRMMRPGEPPT EAAESLF NLFFSE+RYDLSAVGRMKFNR + Sbjct: 1 MRIDSTTTTLEAQIEIYRMMRPGEPPTPEAAESLFNNLFFSEERYDLSAVGRMKFNRRIG 60 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 R+EI G GIL+ DDI+DV++ LI+I NG G VDDIDHLGNRRIRSVGEM ENQFR+GLVR Sbjct: 61 RDEITGPGILTVDDILDVLRTLINIPNGIGGVDDIDHLGNRRIRSVGEMTENQFRIGLVR 120 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 VERAVKERLS+ +++ ++PQ++INAKP+SA+++EFFGSSQLSQFMDQNNPLSE+THKRRI Sbjct: 121 VERAVKERLSVAEIENVVPQELINAKPVSASIREFFGSSQLSQFMDQNNPLSEVTHKRRI 180 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+VYA+TN+YGFLETP Sbjct: 181 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETP 240 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 R+V DG VTD++ YLSAIEEG +VIAQAN+NLDE G+F +D+V R + E ++ S+D+V Sbjct: 241 CRRVEDGRVTDKVEYLSAIEEGGFVIAQANANLDENGYFKDDMVAARHENEFTVISKDKV 300 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +YMDVS +Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRA KPLVGTGMER VA+ Sbjct: 301 NYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAQKPLVGTGMERIVAI 360 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDE-MYPGE-------------AGIDIYNLTKY 756 DSGVT VA+RGG++ VDA+RIV+++N+DE + GE +G+DIYNLTKY Sbjct: 361 DSGVTVVAERGGIIDSVDAARIVVRINDDEVLKEGEDNSITPKFGTLLSSGVDIYNLTKY 420 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQNTCINQ P V + ++RGDVLADGPSTDLGELALGQN+ VAFMPWNGYNFEDSI Sbjct: 421 VRSNQNTCINQKPLVKPDDLIKRGDVLADGPSTDLGELALGQNLFVAFMPWNGYNFEDSI 480 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 L+SERVV+E+RFT+IHI EL+C++RDTKLG EEITADIPNV E+AL LDE+GI+ IGA+ Sbjct: 481 LISERVVEEERFTSIHIVELSCLARDTKLGAEEITADIPNVSESALKNLDEAGIISIGAQ 540 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLRVP+G GTVIDVQVFTR Sbjct: 541 VMPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTMGTVIDVQVFTR 600 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE--------AEK 988 DGV+K RA IE+ +L + KKDL + L+ILE ++ R+ +LV V E Sbjct: 601 DGVDKGARAGRIEQAELNRVKKDLQDTLRILEHDVYLRVEKLLVGNKVTNSSNGWEGWEG 660 Query: 989 LDKL------------------------------------------PRDRWLELGLTDEE 1006 + KL P D+W + L D++ Sbjct: 661 VKKLLVGNKVTNSSKDEDGIETNTIITSRSDDIETNTIITSEILGEPSDKWFKFSLEDKK 720 Query: 1007 KQNQLEQLA------------------EQYDELK-------------------------- 1022 Q QLE A Q + K Sbjct: 721 SQAQLESFAALKALHDLHQVEEDEKSQAQLESFKPALKALHDLPRTKLFELRVEDEKIQA 780 Query: 1023 --HEFEKKLEAKR-----------RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 F ++L+ +R +K+ GD+LAPGVLK+VKVYLA+KR IQPGDKMAGR Sbjct: 781 QIESFAQQLKDQRQRADALYEEKRQKLISGDELAPGVLKMVKVYLAIKRTIQPGDKMAGR 840 Query: 1070 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN 1129 HGNKGV+S I P+EDMPY ++G PVD+VLNPLGVPSRMNIGQ+LETHLG AAK +G++I Sbjct: 841 HGNKGVVSMIVPVEDMPYTKDGRPVDLVLNPLGVPSRMNIGQVLETHLGWAAKALGEQIE 900 Query: 1130 AMLK-------QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 LK Q + +LR ++ + Y++ + DL+ ++ E++ LA+NL G+P+ Sbjct: 901 QKLKIINKSKIIAQSIEELRSYLTKIYNVSG---KPEDLTVLNNAEILELAKNLSDGVPM 957 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 AT VFDGA E+EIK +L+L LPT+GQ LYDGRTGE F R +TVGYMYMLKLNHLVDDK Sbjct: 958 ATQVFDGASESEIKMMLELAGLPTNGQTTLYDGRTGEAFSRQITVGYMYMLKLNHLVDDK 1017 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302 MHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+YTLQEMLTVKSDDVNGRT Sbjct: 1018 MHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRT 1077 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +MYKNIVDG+H+ME GMPESFNVL+KEIRSLGI+IELE Sbjct: 1078 QMYKNIVDGDHRMEAGMPESFNVLVKEIRSLGIDIELE 1115 >UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria RepID=C1F3Y3_ACIC5 Length = 1496 Score = 1412 bits (3656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 749/1474 (50%), Positives = 983/1474 (66%), Gaps = 154/1474 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSVFPIQS---- 61 R R DF K P + +P L+ +Q S+++F++ D GL++ F SVFPI Sbjct: 9 RSRLDFSKIPTSIKIPNLIEVQRRSYERFLQMDKLPTEREDNGLQSVFTSVFPIADFRNI 68 Query: 62 -------YS-GNSELQY------------------------------------------- 70 YS GN E + Sbjct: 69 SQLDFVDYSIGNWECKCGHLKGLHHLRTACTHCGNMVITDPFHPGDVLCQKCGTYNKNTP 128 Query: 71 -VSYRLGEPV-----FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TVKDIKEQEV 122 + G+PV +D EC+ RG+T+SAPL+V +RL IY+++ G T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDQAECEERGMTFSAPLKVTVRLTIYDKDPETGAKTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G+IPLMT NGTF++NGTERVIVSQLHRSPGVFF++ +T+ GK IIPYRGS Sbjct: 189 FFGDIPLMTQNGTFIVNGTERVIVSQLHRSPGVFFETANNRTYFLGK------IIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL + E+IL F+ +++D KL + Sbjct: 243 WVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLKSDEEILKTFYTVDRIQVKDGKLYWTV 302 Query: 242 ----VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 P L G + + NG+ V GR+ITA ++ + + ++ IE+ + G + Sbjct: 303 AEAGTPTHLLGAKPAHAVVHNGQEIVHSGRKITASVLKAIREAKLEQIEIDTTDLDGAMT 362 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 A D ID TGE++ AN EL+ D L K+ ++G +E F D G I+ TLR D Sbjct: 363 AADVIDTETGEVLLEANHELTPDKLHKIVEAGIPTVEVFFPERDDVGNIITNTLRRDSVR 422 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG- 416 AL+EIYR +RPG+PPT + A +LFE +FF +YD S VGR+KFN L E Sbjct: 423 KPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYENAEETP 482 Query: 417 --SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 L+ D ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+ERA Sbjct: 483 LDHRTLTAGDFYSTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERA 542 Query: 475 VKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 +KE++S+ ++ T MP D+INAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 543 IKEKMSVYQEMSTAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSAL 602 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS +A+ NEYGF+E+PYR+ Sbjct: 603 GPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRR 662 Query: 594 VTDGVVTDEI------------------------------------------HYLSAIEE 611 V DG V D + YLSA EE Sbjct: 663 VRDGQVLDFVAVTNAGESGLRVGDYLEKAEALKLNDKLRAEKKRIIEFEPFSFYLSAWEE 722 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + IAQAN LDE H VEDLV R +G L +R++VDY+DVS +Q+VSV ASL+PFL Sbjct: 723 DRHTIAQANVKLDENKHIVEDLVNARRQGNFVLVNREEVDYVDVSPKQLVSVAASLVPFL 782 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMGANMQRQ+VP L ++ PLVGTGME A DSG +A+R GVV VD+ R Sbjct: 783 EHDDANRALMGANMQRQSVPLLVSEAPLVGTGMEGVTARDSGAVILARRNGVVDSVDSER 842 Query: 732 IVIKVNEDEMYPG----EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 I+++V E E +P E G DIY L K+ RSNQNTCINQ P V G+ V +G V+ADGP Sbjct: 843 IIVRV-EGEHHPTQLSREVGSDIYQLIKFKRSNQNTCINQKPIVRKGDRVLKGQVIADGP 901 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 T+ GEL LG+N+ VAFMPW GYNFED+IL+SE++V+ED +T++HI+E +RDTKLGP Sbjct: 902 CTEQGELGLGRNVLVAFMPWRGYNFEDAILISEKLVKEDYYTSVHIEEFEIEARDTKLGP 961 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 EEIT DIPNV E AL LDESGI+ IGA+V DILVGKVTPKGETQLTPEEKLLRAIFG Sbjct: 962 EEITRDIPNVSEHALRDLDESGIIRIGAKVKHNDILVGKVTPKGETQLTPEEKLLRAIFG 1021 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 EKA DV+D+SL P G+ GTV+DV++F+R G EKD+RA +IE Q+ + +K+L +E++IL Sbjct: 1022 EKAGDVRDASLTCPPGIEGTVVDVRIFSRKGQEKDERAKQIEAEQVAKLEKNLEDEIRIL 1081 Query: 968 EAGLFSRIRAVL----VAGGVEAEKLDK--LPRDRWLELGLTDEEKQNQLEQL------- 1014 R+ A+L V + E+ +K L +D L+ + L+++ Sbjct: 1082 TDERLKRLEAILGGKVVLADLHDERTNKRLLVKDAVLDRDAIERISTRNLKRIRYADKDP 1141 Query: 1015 --AEQYDELKHEFEKKLEAKRR-------KITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 EQ DE++ ++++ R+ K+ +GD+L+PGV+K+VK+Y+A+KR++ GDK Sbjct: 1142 RVNEQIDEIEEMTSRQIDVLRKITNERIAKLQKGDELSPGVIKMVKIYIAMKRKLSVGDK 1201 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKGVI++I P EDMPY +GTPV+IVLNPLGVPSRMN+GQILETHLG AA +G Sbjct: 1202 MAGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHDLG 1261 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 ++ A++KQ Q+ +RE I+ + A + Q ++L DE+++R+ + +G+ T Sbjct: 1262 VQVAAIVKQHQDANVIREVIKERFKGTAVINQLIEL---EDEQLLRVGAGMARGIWFGTA 1318 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 VFDGAKE EIK LL+ LPTSG+ +L+DG TGE FE+PVTVG++YMLKL+HLVDDK+HA Sbjct: 1319 VFDGAKEEEIKALLESAGLPTSGKTKLFDGMTGEAFEQPVTVGFIYMLKLSHLVDDKIHA 1378 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 RS G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+Y Sbjct: 1379 RSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIY 1438 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1439 EAIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1472 >UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 Tax=cellular organisms RepID=RPOB_ACIBL Length = 1489 Score = 1399 bits (3622), Expect = 0.0, Method: Compositional matrix adjust. Identities = 724/1352 (53%), Positives = 947/1352 (70%), Gaps = 96/1352 (7%) Query: 74 RLGEPV-----FDVQECQIRGVTYSAPLRVKLRLVIYER--EAPEGTVKDIKEQEVYMGE 126 + G+PV +DV EC+ RG+TYSAPL+V +RL I+++ E T++DIKEQEV+ G+ Sbjct: 133 KCGDPVGLQLKYDVAECEERGMTYSAPLKVTMRLTIFDKDPETNNRTIRDIKEQEVFFGD 192 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 +PLMT NGTF+INGTERVIVSQLHRSPGVFF++ +T+ GK IIPYRGSW++F Sbjct: 193 VPLMTQNGTFIINGTERVIVSQLHRSPGVFFETANNRTYFLGK------IIPYRGSWVEF 246 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVP-- 243 E+D K+ L+VRIDR+RK TI LRAL T E IL F+ ++D KL L P Sbjct: 247 EYDQKNILYVRIDRKRKFLGTIFLRALGLRTDEDILRTFYTVDRIAVKDKKLYWTLEPGI 306 Query: 244 ER---LRGETASFDIEA-NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 ER L G S I+A NG+ GR++TA +++++K + +E+ + + G VA Sbjct: 307 ERPTNLVGLKLSHAIKAKNGEEVAHSGRKVTASVLKEIQKHKISELEIELGDLEGAYVAS 366 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 D ID +TGE++ AN EL+ D L+K+ +G + F D G IS TLR D Sbjct: 367 DVIDTNTGEVLLEANQELTADKLSKMIDAGIGEVNVFFPERDDVGTVISATLRRDSVKTP 426 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL-REEIEG-- 416 AL+EIYR +RPG+PPT + A +LF +FF +YD S VGR+KFN L R++ G Sbjct: 427 QEALIEIYRKLRPGDPPTLDTATALFHGMFFDARKYDFSRVGRLKFNIKLFDRQDPTGLD 486 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 L DD ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+ERA+K Sbjct: 487 KRTLDPDDFYHTIRYLLKLRRNLGAVDDIDHLGNRRVRAVGELLENQFRIGLVRMERAIK 546 Query: 477 ERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 E++S+ ++ T MP D++NAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+SALGP Sbjct: 547 EKMSVYQEMSTAMPHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGP 606 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS YA+ N+YGF+E+PYR+V Sbjct: 607 GGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCYARINDYGFIESPYRRVK 666 Query: 596 DGVVTDEIH------------------------------------------YLSAIEEGN 613 G V D + YLSA EE Sbjct: 667 GGRVIDYVQVTHAGDSDYRVGDKMEKSEAQKANEELRGRKKRGIELEPYSFYLSAWEEDK 726 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 + IAQAN+ LDE+G +LV R G L SRD +DY+DVS +Q+VSV ASL+PFLEH Sbjct: 727 WTIAQANAELDEKGKITSELVNARKAGNFVLISRDDIDYIDVSPKQLVSVAASLVPFLEH 786 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 DDANRALMGANMQRQ+VP LRA+ P+VGTGME A DSG +A+R G++ VD+ R++ Sbjct: 787 DDANRALMGANMQRQSVPLLRAEAPIVGTGMEGVTARDSGAVVLARRSGIIDSVDSERVI 846 Query: 734 IKVNEDEMYP----GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 ++V E E +P E G DIY LTK+ RSNQNTCINQ P V G+ V++G V+ADGP T Sbjct: 847 VRV-EGEHHPMQLSREVGSDIYQLTKFKRSNQNTCINQKPIVKQGDHVKKGQVIADGPCT 905 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 D GEL LG+N+ V+FMPW GYNFED+ILVSE++V+ED +T++HI+E +RDTKLGPEE Sbjct: 906 DHGELGLGRNVLVSFMPWRGYNFEDAILVSEKLVKEDYYTSVHIEEFEIEARDTKLGPEE 965 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 IT DIPNV E+AL LDESG++ IGA V GDILVGKVTPKGETQLTPEEKLLRAIFGEK Sbjct: 966 ITRDIPNVSESALRDLDESGVIRIGAPVKAGDILVGKVTPKGETQLTPEEKLLRAIFGEK 1025 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 A DV+D+SL P G+ G V+DV++F+R G EKD+RA +IE Q+ + +K+L++E++IL Sbjct: 1026 AGDVRDASLTCPPGIEGVVVDVKIFSRKGQEKDERAKQIEGTQIAKLEKNLADEIRILTD 1085 Query: 970 GLFSRIRAVLVAGGVEAEKLDKLPRDRWL-ELGLTDEEKQNQLE--------------QL 1014 R+ +L A V+A+ D+ R L + + D E ++ ++ Sbjct: 1086 ERLKRLEGLLGAKVVQADLHDERTNKRLLTKDAVLDRETIERISTRNLKRIKYADKDPRV 1145 Query: 1015 AEQYDELKHEFEKKLEAKRR-------KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 EQ DE++ ++++ R+ K+ +GD+L PGV+K+VKVY+A+KR++ GDKMA Sbjct: 1146 NEQIDEIEEMTSRQIDVLRKIVREKIEKLQKGDELPPGVIKLVKVYIAMKRKLSVGDKMA 1205 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 GRHGNKGVI++I P EDMPY E+GTPV+IVLNPLGVPSRMN+GQILETHLG A +G K Sbjct: 1206 GRHGNKGVIARILPEEDMPYLEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAGHELGKK 1265 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 I + + E ++R+ +++ + A V +L DE ++++A+ ++ G+ + VF Sbjct: 1266 IAEFMVENSEAGQVRKHLKQLFKDTAFVDHVTEL---DDEMLLKVAKGMQDGVFFGSAVF 1322 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 DG+ EAEIK LL LPTSG+ LYDG TG++FE+PVTVGY+YMLKL+HLVDDK+HARS Sbjct: 1323 DGSTEAEIKSLLDQAGLPTSGKTFLYDGMTGDRFEQPVTVGYIYMLKLSHLVDDKIHARS 1382 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+Y+ Sbjct: 1383 IGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYEA 1442 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1443 IVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1474 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGN 65 R R+DF K P + +P L+ +Q S+ +F++ D GL+A F+SVFPI + Sbjct: 9 RNRQDFSKIPATIQIPNLIEVQKRSYDRFLQMDLLPSERDDAGLQAVFQSVFPITDFRNV 68 Query: 66 SELQYVSYRLG 76 S+L++V Y +G Sbjct: 69 SQLEFVDYAIG 79 >UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFV8_THEYD Length = 1312 Score = 1379 bits (3569), Expect = 0.0, Method: Compositional matrix adjust. Identities = 719/1356 (53%), Positives = 960/1356 (70%), Gaps = 86/1356 (6%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD--PE--GQYGLEAAFRSVFPIQSYSGN 65 R R +FGK P +++VPYLL Q SF KF+++D PE GL++A SVFPI Y+G Sbjct: 6 RERINFGKVPPLVEVPYLLEFQRKSFDKFLQKDIPPEERADEGLQSALNSVFPISDYNGT 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYER-EAPEGTVKDIKEQEVYM 124 + ++++SY +GEP EC ++G+TYS P+++K+RL I+++ E +K+ +EQEV++ Sbjct: 66 TTIEFISYSVGEPKLTPYECMVKGLTYSVPIKMKVRLNIWDKDEEGRKFLKESREQEVFL 125 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G++P+MT+ G+F+ING ERVIVSQLHRSPGV+F D+ K+ SG+ LY+ARIIP RGSWL Sbjct: 126 GDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPVRGSWL 185 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 DFEFD KD L+VRID+R+KLPATI+L+AL YT E +L +F+ I+D +V + Sbjct: 186 DFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLRIFYPIEEIRIKDETTYTRVVSD 245 Query: 245 RLRGETASFDI-EANGK-VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 L G DI A+GK + V++G +IT ++++++ ++ I + I G++ D + Sbjct: 246 ILTGVRTKVDICSADGKDIIVKEGSKITRYSLKKMKELGIQEIPISKSEIIGRITLSDIV 305 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 D TGE+I +N E++ + ++ + +++E LF +++++ P + ETL D ++ A Sbjct: 306 DPETGEVIVDSNKEITEESFHRIISARIQKLELLFIDNINYLPSLRETLLTDKVENKKHA 365 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L EIY+ +RPGEP T EAAE LF LFF RYDLS+VGR+K N+ L + +L+ Sbjct: 366 LREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSSVGRLKLNQKLGLDIPLDVRVLTD 425 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 DII+++K L+++R GKGEVDDIDHLGNRR+R VGE+ ENQFR+GLVR+ERA++E++++ Sbjct: 426 KDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIREKMTIT 485 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 D++T MP D+IN KP+ AAVKEFF +SQLSQFMDQ NPLSEITHKRR+SALGPGGLTRER Sbjct: 486 DVETAMPHDVINTKPVMAAVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRER 545 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 AGFEVRDVHPTHYGR+CPIETPEGPNIGLI SL+ YA+ N++GF+E+PYRKV +G VT++ Sbjct: 546 AGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINDFGFIESPYRKVVNGKVTND 605 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 +H+LSA+E NYVIA+A + +DEEG+ + + V+ R KG+ + SR++V+YMDVS +Q+VS Sbjct: 606 VHFLSALESENYVIAEATTPVDEEGNIIGETVSARVKGDFKMVSREEVEYMDVSPKQIVS 665 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 + ASLIPFLE+DDANRALMG+NMQRQAVP + + P+VGTGME A DSG VAKR G Sbjct: 666 LSASLIPFLENDDANRALMGSNMQRQAVPLIHTEAPIVGTGMELYAARDSGWLVVAKRAG 725 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 +V+ VD+ RIVI+V E+ G+DIYNL K+ +SNQ TC+ Q P V +G+ VERG + Sbjct: 726 IVENVDSRRIVIRVTEE-----GGGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVERGTI 780 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 LADGP D GELALG+N+ VAFMPW GYNFED+ILVSER+V+ED +T+IHI E RD Sbjct: 781 LADGPCMDNGELALGRNVLVAFMPWGGYNFEDAILVSERLVKEDVYTSIHIDEFEIECRD 840 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 TKLGPEEIT +IPNV E L LDE GI+ IGA+V GDILVGKVTPKGE LTPEEKLL Sbjct: 841 TKLGPEEITREIPNVNEELLKNLDEDGIIRIGAKVKAGDILVGKVTPKGERVLTPEEKLL 900 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE 962 AIFGEKA DVK+S L VP G+ G VIDV++ TR G EK +RA IEE ++K+ ++D + Sbjct: 901 YAIFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRANAIEEEEIKRIERDRED 960 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDK-----LPRDRWLELGLTDEEKQNQLEQLAEQ 1017 E++IL+ SRIR +L G + E + K P+ + L + + NQL +L + Sbjct: 961 EIRILKETKASRIRKIL-KGKIILEDVKKGEKIICPKGKALTEKVVNLLDVNQLLKLKVE 1019 Query: 1018 YDELKHEFEK--------------KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 ++K E + K K +I +GD+L PGV +IVKVY+A+KR+IQ G Sbjct: 1020 DPDVKAEVSRVNKEVEQNIKQIYAKYNEKIERIKKGDELPPGVNQIVKVYIAMKRKIQVG 1079 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DKMAGRHGNKGV+S I P EDMPY E+GTPVDIVLNPLGVPSRMN+GQILETHLG+AAK Sbjct: 1080 DKMAGRHGNKGVVSMILPEEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKA 1139 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 +G + + + + + +++E ++ +G +V L + + G P Sbjct: 1140 LGLYVASPVFEGAKEDEIKEMFRK---VGYPTTGQVTLY------------DGKTGEPFE 1184 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 PV TVGYMYMLKL+HLV DK+ Sbjct: 1185 RPV---------------------------------------TVGYMYMLKLHHLVADKI 1205 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HARS G YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAYTLQE LTVKSDD+ GRT+ Sbjct: 1206 HARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDITGRTR 1265 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 MY+ IV G+ +EPG+PESFNVL+KE++SL ++++L Sbjct: 1266 MYEAIVKGHPVLEPGVPESFNVLIKELQSLCLDVDL 1301 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1239 bits (3206), Expect = 0.0, Method: Compositional matrix adjust. Identities = 661/1403 (47%), Positives = 898/1403 (64%), Gaps = 93/1403 (6%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQ 86 L+ +Q +S++ F + G LE+ FRSVFPI + ++++S R+ P +D EC Sbjct: 32 LVKVQKESYKSFTPGN-HGNERLESIFRSVFPINDPLHRATIEFISCRIDNPKYDESECI 90 Query: 87 IRGVTYSAPLRVKLRLVIY-------EREAPEGT---------VKDIKEQEVYMGEIPLM 130 RG+T+SA + +RLVI E ++ +G+ +K I EQEV+ E+P+M Sbjct: 91 KRGITFSARVIASIRLVIMQDGISLDEYKSIKGSGDHSKLSTIIKFIGEQEVHFCELPMM 150 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 TD GTF+ING E+VIVSQ+HRSPGVFFDSDKGKT++SGK++Y+AR+IPYRGSWLD EFD Sbjct: 151 TDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKLIYSARVIPYRGSWLDIEFDV 210 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 KD L+ RIDR+RKLP +++L+AL + ILD F+EK+ + N ++ VP++ +G Sbjct: 211 KDLLYFRIDRKRKLPISVLLKALGLSNSDILDRFYEKIKYIKYKNSWKVPFVPDKFKGVR 270 Query: 251 ASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 FD+ + G V + RIT+R ++L D++K VP + I G +A+D ID + Sbjct: 271 LPFDLMDVEGNVLFKANVRITSRLAKKLHDDELKEYLVPFDSICGLFLAEDLIDSVSSTK 330 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 I +A + ++ + KL I L ++L GPYI TL +D AL EIY++ Sbjct: 331 ILSAGESIKIEDVKKLELLSIGEISVLNIDNLSVGPYILNTLFLDENMSYQDALYEIYKV 390 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 +RPGE P E E F NLFF+ + YDLS +GR+K N L + E +L+ +DII+++ Sbjct: 391 LRPGEVPVLEIVEEFFHNLFFNPEYYDLSNIGRLKLNSYLGLDYDEDLTVLTHEDIIEIV 450 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP 489 +K++ +R+G+G VDDIDHLGNRR+RSVGE ENQFR GL+++ERAV + +S LD + Sbjct: 451 RKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRAGLLKLERAVIDSMSTSSLDKVSS 510 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 D IN K ++ +++FF SSQLSQFMDQ NPLSEITHKRR+SALGPGGLTR+RAGFEVRD Sbjct: 511 PDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRDRAGFEVRD 570 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI 609 VHPTHYGR+CPIETPEG NIGLINSL++YA+ N+YGF+E+PYRKV + V TD+I YLSAI Sbjct: 571 VHPTHYGRICPIETPEGQNIGLINSLAIYARVNKYGFIESPYRKVINRVATDQIEYLSAI 630 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 +EG Y IA A++ LD F++D++ CR G + S DQV Y+DVS +QV+SV ASLIP Sbjct: 631 DEGLYYIADASAKLDNNNRFIDDMLYCRYAGNFVMVSSDQVSYIDVSPKQVISVAASLIP 690 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 FLE+DDANRALMG+NMQRQAVP L+ PLVGTG+E VA SG +AKR G+V D+ Sbjct: 691 FLENDDANRALMGSNMQRQAVPLLKPTAPLVGTGIESFVASGSGAVVLAKRDGIVDSSDS 750 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 + IVI+ ++E G+DIY+L K+ RSN NTCINQ P V +G+ V+ GDV+ADGP+ Sbjct: 751 NSIVIRAFDEERV-NYLGVDIYHLKKFQRSNHNTCINQKPLVRIGDYVKEGDVIADGPAI 809 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 + GELALGQN+ VAFM W GYNFEDSI++S +V++D FT+IHI+E CV DT LG E+ Sbjct: 810 NSGELALGQNLLVAFMSWQGYNFEDSIIISSEIVKKDLFTSIHIEEFECVVHDTPLGSEK 869 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 IT IP V E L LD SGIV IG V G ILVGK+TPK L PE KLL IFGEK Sbjct: 870 ITRAIPGVNEENLYHLDNSGIVKIGTRVGPGYILVGKITPKPSLLLPPETKLLMTIFGEK 929 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 + D DSSL V GTVIDVQVFTR GVE+++RAL I++ ++ +K+ + + Sbjct: 930 SFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALLIKQKEMNDLEKERDYIINVASE 989 Query: 970 GLFSRIRAVLV-AGGVEAEKLDKLPRDRWLELGLT---------------DEEKQNQLEQ 1013 + ++ +LV + + EKLD + R++W +GL D++ N + Q Sbjct: 990 YFYDELKKLLVHSCSQDQEKLDAIEREQWWGIGLKNRSISEQVKNLKKDFDKKVSNTIAQ 1049 Query: 1014 LAEQYDELKHEFE---------KKLEAKRRKITQGDDLA-----PGVLK----------- 1048 ++ ++L ++ K A + + GD +A GV+ Sbjct: 1050 FKQKVEKLDEGYDLPQGVLMSVKVFIAVKHSLQPGDKMAGRHGNKGVISRVVPVEDMPYL 1109 Query: 1049 -------IVKVYLAVKRRIQPGD-----------KMAGRHGNKGVISKINPI-EDMPY-- 1087 I+ L V R+ G K+ R GN ++ +IN I D Sbjct: 1110 EDGTPVDIILNPLGVPSRMNVGQILETHVGWACKKLGERVGN--ILDEINKINSDFCKEI 1167 Query: 1088 ----DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI-GDKINAMLKQQQEVAK-- 1140 D N V + +I ++ + + KG+ D++NA+++ K Sbjct: 1168 RSLDDNNFAKFAAVYFDNKKTEEVRDDEITDSLVNIPNKGLLNDELNALVENYLNSCKSA 1227 Query: 1141 ---LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 LR F+ Y G+DV ++ S+ ++ A LR G+P+A PVF+G K+ I + Sbjct: 1228 YDNLRSFLIEVYSCGSDVSICNNIRDISNSNLIEFAHKLRNGIPVAAPVFEGPKDKNIIK 1287 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L L L SGQ YDGRTGE+F+R VTVGYMYMLKL+HLVDDK+HARS G YSLVTQQ Sbjct: 1288 LFTLAGLDPSGQTEAYDGRTGEKFDRKVTVGYMYMLKLHHLVDDKIHARSVGPYSLVTQQ 1347 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGK+ FGGQRFGEME WAL+AYGAAYTLQEMLTVKSDD+NGR K+Y++I+ G+ E Sbjct: 1348 PLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDINGRVKIYESIIKGDSNFEC 1407 Query: 1318 GMPESFNVLLKEIRSLGINIELE 1340 G PESFNV++KE+RSL +N+ L+ Sbjct: 1408 GTPESFNVMIKELRSLCLNVALK 1430 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 1219 bits (3154), Expect = 0.0, Method: Compositional matrix adjust. Identities = 650/1389 (46%), Positives = 910/1389 (65%), Gaps = 82/1389 (5%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R+R DF K P L+VP LL +Q DS+ F+ + G+E F+S+FPIQ Sbjct: 8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQDEHNRIT 67 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT---VKDIKEQEVYM 124 L+Y G+ + V+E RG+TYS PL++K+RL+++E++ G +KDIKEQ +++ Sbjct: 68 LEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSIFI 127 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 EIPLMT+ +F+ING ERV+V+QLHRSPGV F ++ T S K++Y +IIP RGSWL Sbjct: 128 REIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESST-SLNKLIYTGQIIPDRGSWL 186 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP- 243 FE+D KD L+ RI++RRK+P TI+ RA++Y + I+ +F+ V ++K L+P Sbjct: 187 YFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKY---LIPF 243 Query: 244 -ERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 + FD+ + GKV + G+++T+R I++L+++ ++ +E P++ + + +A+ Sbjct: 244 ASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLAEPV 303 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRI------ETLFTNDL--DHGPYI------ 347 + E+ LD+L +L ++ ++I E + NDL H I Sbjct: 304 M----------VGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSA 353 Query: 348 -SETLRVDPTNDRLS-----ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 SE+L++ +++ A + I+++M+PG+P T E A+ + LFF +RYDL+ VG Sbjct: 354 DSESLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVG 413 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE 461 RMK N L + L+ +DII +K L+ I+N +G++DD DHLGNRRIR+VGE+ Sbjct: 414 RMKMNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLA 473 Query: 462 NQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 N+ GLV++++ +K++L+ G D+LMP D++N+K I++ + EFF QLSQFMDQ N Sbjct: 474 NELHSGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTN 533 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 PLSE+THKRR+SALG GGL ++R GFE RDVHPTHYGR+CPIETPEG NIGLIN+LS + Sbjct: 534 PLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFT 593 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 + N+ GF+E PY+KV DG V E YL+AI+E +++IA A++ +DEEG+ + DL+ R + Sbjct: 594 RVNDLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVE 653 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 GE L + +V MD+S+ +V V ASLIPFLEHDDANRALMG NMQRQAVP LR D P+ Sbjct: 654 GEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPI 713 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 VGTG+E+ +A DS A R GVV+ +D+ I I E EA ID Y+L K R+ Sbjct: 714 VGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKE----EAYIDAYSLQKNLRT 769 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 NQNT NQ+P V +G+ VE G ++ADGPS D GELALG+N+RVAFMPWNGYNFED+I+VS Sbjct: 770 NQNTSFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVS 829 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ER+ ++D FT+ HI E +R+ K G EE TADIP+V E AL+ LDESGIV +G V+ Sbjct: 830 ERITKDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSA 889 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 G ILVGK +PKGE + TPEE+LLRAIFG+KA V + SL P + GTVIDV+VFT+ G Sbjct: 890 GMILVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGY 949 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG---------GVEAEKLD 990 EKD R L E + + + + L +L R+ ++L G + ++ D Sbjct: 950 EKDARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGD 1009 Query: 991 KLPR------DRWLELGLT---DEEKQNQLE----QLAEQYDELKHEFEKKLEAKRRKIT 1037 ++P+ +R+ L +E QN E EQ L E E+KL I Sbjct: 1010 QIPKEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLS-----IL 1064 Query: 1038 QGDDLAP-GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + DD+ P GV+K VK+Y+A KR+++ GDKMAGRHGNKG++S I P+ DMPY +G PVDI Sbjct: 1065 EKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDI 1124 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE------VAKLREFIQRAYD 1150 VLNPLGVPSRMNIGQILE HLG+ K G +I +ML+ + + AK+ E I A + Sbjct: 1125 VLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLE-IANAIN 1183 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 G D L + SDEE++ A++ KG+ +A PVF+G + + +L +L + G++ Sbjct: 1184 -GKDPLTIHVLESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKM 1242 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 LYDGRTGE+ V VGYMYM+KL+HLVD+K+HARSTG YSLVT QP+GGKA FGGQRF Sbjct: 1243 DLYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRF 1302 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEMEVWALEAYGAA+TL+EMLT+KSDD+ GR Y+ I G E +PE+F VL KE+ Sbjct: 1303 GEMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKEL 1362 Query: 1331 RSLGINIEL 1339 +SL ++I + Sbjct: 1363 QSLALDINI 1371 >UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 Tax=cellular organisms RepID=RPOB_PELPD Length = 1499 Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 590/986 (59%), Positives = 756/986 (76%), Gaps = 48/986 (4%) Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILS--KDDIIDVMKKLIDIRNGKGEVDDIDH 447 F E+R + + R NR ++ E++ +L+ K+DI+++++ LID++NG+G +DDIDH Sbjct: 529 FEENRRVIEVLRR---NR-MIFEDLYAPVVLTSPKNDILEIVRYLIDLKNGRGAIDDIDH 584 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 LGNRR+R+VGE+ ENQ+R+GLVR+ERA+KER+SL +++ LMP D+IN+KP+SA VKEFFG Sbjct: 585 LGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFG 644 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 SSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP Sbjct: 645 SSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 704 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 NIGLI SLS YA+ N++GF+ETPYR V DG +T+E+ + SA+EE + IAQAN+ +D EG Sbjct: 705 NIGLIASLSTYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEGHAIAQANAEVDAEG 764 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 FV D V+ R GE L RD+++ MDV+ +Q+VSV A+LIPFLE+DDANRALMG+NMQR Sbjct: 765 RFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDANRALMGSNMQR 824 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 QAVP LRAD PLVGTGMER VA DSGV+ +A+ GVV+ VDASRIV+K++E E+ G Sbjct: 825 QAVPLLRADSPLVGTGMERIVAKDSGVSVIARHNGVVESVDASRIVVKIDESEVDETGTG 884 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 +DIYNL K+ RSNQNTCIN P V +G+ V+R DV+ADGPSTD+GELALGQN+ VAFMPW Sbjct: 885 VDIYNLIKFARSNQNTCINNKPVVKVGDVVKRHDVIADGPSTDMGELALGQNIVVAFMPW 944 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 GYNFEDSILVSE++V++DR+T+IHI+E CV+RDTKLG EEIT+DIPN+GE AL LDE Sbjct: 945 GGYNFEDSILVSEKLVKDDRYTSIHIEEYECVARDTKLGKEEITSDIPNLGEEALKDLDE 1004 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 SGI+ IGAEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+D+SL VP GV GT Sbjct: 1005 SGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDTSLTVPPGVEGT 1064 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG---- 983 VI +VF+R G +KD R IE+ + ++ +KD +E++I+ ++ +L+ Sbjct: 1065 VIGAKVFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIRQSAEGKLHRLLIGKSLSVK 1124 Query: 984 ---------------VEAEKLDKLPRDRWLEL-----GLTDEEKQNQLEQLAEQYDELKH 1023 + AE L L + + G TD+ ++ L Q + ++ Sbjct: 1125 LEDGEGNLILAKGKEITAEALKSLSINDMGAISVSDDGQTDDNVSKVIDTLNRQIELIQS 1184 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 FE K++ RR GDDL PGV+K+VKVY+A+KR++Q GDKMAGRHGNKGV+S+I P E Sbjct: 1185 VFEDKIQKLRR----GDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEE 1240 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMPY E+G PV+IVLNPLGVPSRMN+GQILETHLG AAKGIG +I ML++Q L+ Sbjct: 1241 DMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWRIEEMLQKQTSAESLKA 1300 Query: 1144 FIQRAYDLGADVRQKVDLSTFSD----EEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 +++ Y G D ++ TF D EE+M + L++G+ +A+PVF+GA E +IK +L Sbjct: 1301 YLKDVY--GDD-----EVGTFIDGMDQEELMLVCRRLQRGVSMASPVFEGASEDKIKSML 1353 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 +SGQ+ L+DGR+G+ F+ VTVG MY+LKL+HLVDDK+HARS G YSLVTQQPL Sbjct: 1354 GKAGFHSSGQVTLFDGRSGDPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYSLVTQQPL 1413 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 GGKAQFGGQR GEMEVWA+EAYGAAY LQE LTVKSDDV+GRT+MY+ IV G H +EPG+ Sbjct: 1414 GGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVSGRTRMYEAIVKGKHTLEPGL 1473 Query: 1320 PESFNVLLKEIRSLGINIEL---EDE 1342 PESFNVL+KE++SL +++EL EDE Sbjct: 1474 PESFNVLIKELQSLCLDVELLEGEDE 1499 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/417 (48%), Positives = 287/417 (68%), Gaps = 8/417 (1%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 M YS +RK F K ++D+P L+ IQ +S+++F++Q+ GLEA FRSV Sbjct: 1 MAYSIANNHLLRKTFTKIKNIIDIPNLIDIQKNSYRRFLQQEGVSESRNNTGLEAVFRSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTV 114 FPI+ +S ++ L+YVSY L +P +DV EC RG+T++AP++VK+RLVI++ +E+ + Sbjct: 61 FPIKDFSESASLEYVSYSLSKPKYDVVECHQRGMTFAAPMKVKVRLVIWDTGKESGIRAI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 KDIKEQEVY GEIPLMTDNGTF+INGTERVIVSQLHRSPGVF+D DKGKTHSSGKVLY+A Sbjct: 121 KDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLDFEFD KD L+VRIDRRRK+PAT++L+AL Y+ EQ+L+ +++ + Sbjct: 181 RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSAEQLLNYYYKSEEIFLTG 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + E L + A D+ +G+V V+ R+ T IR++ + D+K + + + I Sbjct: 241 ETPSKSIDAELLTLQKALVDVVDPKSGEVIVKANRKFTKASIRKMVEHDIKAVPITFDSI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ + D ID +TGE++ N E++ + ++ G + LF ++L +TL Sbjct: 301 IGRYASSDVIDPATGEVLLECNEEVTAEKFDEIKAKGVESFRLLFIDNLHITSSFRDTLL 360 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 +D + AL+EIYR +RPG+PPT +++ +LFENLFF+ +RYDLSAVGR+K N L Sbjct: 361 MDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNPERYDLSAVGRLKLNFKL 417 >UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax=Bacteroidetes RepID=RPOB_CYTH3 Length = 1291 Score = 1149 bits (2971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 637/1402 (45%), Positives = 871/1402 (62%), Gaps = 187/1402 (13%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSG 64 + +RK F K ++ P L IQ+ SF+ F + D + GL F FPI Sbjct: 7 QNLRKSFAKTRSTVEYPDFLDIQVRSFKDFFQIDTPAENRFKEGLYKVFAENFPISDSRD 66 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 N L ++ Y + P ++V EC RG+TY+ PL+ KLRL +++ + EQEV++ Sbjct: 67 NFILDFIDYNIDTPKYNVDECIDRGLTYAVPLKAKLRLTCNDKDNEDFQTI---EQEVFL 123 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G IP MT+ G+FVING ERVIVSQLHRSPGVFF K H++G LY+AR+IP++GSW+ Sbjct: 124 GNIPYMTERGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARVIPFKGSWI 180 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQMELVP 243 +F D + +F IDR++K P T +LRA+ Y +++ ILDLF Sbjct: 181 EFATDVNNVMFAYIDRKKKFPVTTLLRAIGYGSDKDILDLF------------------- 221 Query: 244 ERLRGETASFDIEANGKVYVEK--GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 S ++EA K ++K GR++ AR +R +D+ Sbjct: 222 ------GLSEEVEAT-KANIKKAIGRKLAARVLRTW--------------------TEDF 254 Query: 302 IDESTGELICAANMELSL--DLLAK------LSQSGHKRIETLFTNDLDHGPY--ISETL 351 +DE TGE++ E+ L D + K + +SG K I L D++ Y I TL Sbjct: 255 VDEDTGEVVSIDRNEVLLERDSIIKEEDINIIVESGSKSI-ILHREDVNIADYTIIYNTL 313 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 + D +N A+ +IYR +R + P + A + NLFFS+ RYDL VGR + N+ L Sbjct: 314 QKDNSNSEKEAVEQIYRQLRNTDAPDEQTARDIIHNLFFSDKRYDLGEVGRYRINKKL-- 371 Query: 412 EEIEGSG------ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 GSG +L+K+DII+++K LI + N + VDDIDHL NRR+R++GE +QF Sbjct: 372 ----GSGMGSEVKVLTKEDIINIVKYLIGLINSRAVVDDIDHLSNRRVRTMGEQLYSQFS 427 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 VGL R+ R +KER+++ D + P D+INA+ +S+ + FFG++QLSQFMDQ NPL+EIT Sbjct: 428 VGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEIT 487 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 HKRR+SALGPGGL+RERAGFEVRDVH THYGR+C IETPEGPNIGLI+SL V+A+ N G Sbjct: 488 HKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMG 547 Query: 586 FLETPYRKVTDGV--VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 F+ETPYRKV DG+ V ++ +L+A EE IAQAN+ D+ G+F+ D + R +G+ Sbjct: 548 FIETPYRKVIDGIVDVKNQPVFLTAEEEDGAHIAQANAMYDDNGNFISDRIKARYEGDFP 607 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + + D+VD +D++T Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVP LR + P+VGTG Sbjct: 608 VIAPDKVDLIDIATNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTG 667 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIK---VNEDEMYPGEAGIDIYNLTKYTRSN 760 +ER VA+DS +A+ GVV++VDA+ I ++ +ED + ++ I Y+L K+ R+N Sbjct: 668 LERRVAMDSRTLLIAEADGVVEFVDANEIKMRYDLTDEDRLVSFDSDIITYSLIKFRRTN 727 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q+TCIN P + GE V++G VL +G +TD GELALG+N+ VAFMPW GYNFED+I++SE Sbjct: 728 QDTCINLKPVIQHGERVKKGQVLCEGYATDKGELALGRNLMVAFMPWQGYNFEDAIVISE 787 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +VV++D FT+IHI+E RDTK G EE+T++IPNV E A+ LDE+GI+ GAE+ G Sbjct: 788 KVVRDDIFTSIHIEEFELEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRTGAEIKEG 847 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 DIL+GK+TPKGE+ TPEEKLLRAIFG+KA DVKD+S++ P + G VID ++F+R + Sbjct: 848 DILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASMKAPPSLRGVVIDTKLFSRPKKD 907 Query: 941 KD---KRALEIEEMQLKQAKKDLSEELQILEA-----------GLFSRIRAVLVAGGV-- 984 KD K ++E ++ K +K L+ Q++E G+ + +++ GV Sbjct: 908 KDLRIKSKKQVETIKGKYSKDLLALREQMIEKLAALLDGQTSQGVKHKFGDEVISKGVKF 967 Query: 985 --------------------------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 EA L L D W +D++ + +L + Y Sbjct: 968 SRKNIEANVFPDKNPYRDESNYNVQEEANLLGDLIIDNW----TSDKKINENVLRLVKNY 1023 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 ++E K + +R + GD+L G++++ KVY+A KR+++ GDKMAGRHGNKGV+++ Sbjct: 1024 LTKRNETAGKFKRERFTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVAR 1083 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I EDMP+ E+GTPVDIVLNPLGVPSRMNIGQI ET LG+A K +G Sbjct: 1084 IVRDEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETLLGLAGKKLG------------- 1130 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 R Y PI FDGA E E+ Sbjct: 1131 --------RKY-----------------------------ATPI----FDGASEEEVINE 1149 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L+ LPT G+ +L DG +G F++PVTVG +YM+KL HLVDDKMHARS G YSL+TQQP Sbjct: 1150 LRDAGLPTIGRTKLVDGLSGNPFDQPVTVGVIYMMKLGHLVDDKMHARSIGPYSLITQQP 1209 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQFGGQRFGEMEVWALEA+GAA LQE+LTVKSDDV GR K Y+ IV G + P Sbjct: 1210 LGGKAQFGGQRFGEMEVWALEAFGAANILQEILTVKSDDVVGRAKTYECIVKGENLPRPN 1269 Query: 1319 MPESFNVLLKEIRSLGINIELE 1340 +PESFNVL+ E+R L + I L Sbjct: 1270 IPESFNVLVHELRGLALEITLH 1291 >UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Tax=Chlamydiae/Verrucomicrobia group RepID=RPOB_PARUW Length = 1254 Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/1366 (45%), Positives = 858/1366 (62%), Gaps = 161/1366 (11%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD--PEGQ--YGLEAAFRSVFPIQSYSGNSE 67 R+ F + +++D+P L+ IQ+ S+ +F++ D P+ + GL+ F +FPI+SY + Sbjct: 8 RESFNDKEEIIDLPNLIEIQIKSYNQFLQADKFPDERENIGLQEVFTEIFPIKSYDEKTI 67 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++SY LG P ++ +EC RG+TY+ L+VK RL IKE+EVYMG I Sbjct: 68 LEFLSYNLGVPKYNPEECIRRGITYNVTLKVKFRLT---------DETGIKEEEVYMGTI 118 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF++NG ERV+VSQLHRSPG+ F+ ++ HS G V+Y+ RIIPYRGSWL+ Sbjct: 119 PVMTDKGTFIVNGAERVVVSQLHRSPGICFEQER---HSRGNVIYSFRIIPYRGSWLEGA 175 Query: 188 FDPKDNLFVRIDR---RRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQMELVP 243 FD D + + IDR RRK+ AT +RAL Y++ I++ FF ++I++ Sbjct: 176 FDTNDLIHIYIDRKKRRRKILATTFIRALGYSSNSDIIEEFFTTRKYKIKN--------- 226 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 EK+ KL+ GK++A+D +D Sbjct: 227 ----------------------------------EKEFAKLV--------GKILAQDVVD 244 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 E +G + A+ +L+ +L ++ +G I D D + + L DPT+ SAL Sbjct: 245 EESGLVFGKASEKLTTAMLKRIVDAGIDVIR--IAEDADETSPVIKMLAKDPTDSYESAL 302 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL---LREEIEGSGIL 420 + YR +RPGEP T A S LFF RY+L VGR K N L + +E + L Sbjct: 303 KDFYRKIRPGEPATLSNARSAIMRLFFDPKRYNLGRVGRYKLNSKLGCEINDEKLQTVTL 362 Query: 421 SKDDIIDVMKKLIDIRNGKGE--VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 K+D+I +K LI +++G E +DDIDHLGNRR+RSVGE+ +NQ R+GL R+E+ ++ER Sbjct: 363 DKEDVIGALKYLIMLKSGSEEASIDDIDHLGNRRVRSVGELIQNQCRIGLARMEKIIRER 422 Query: 479 LSLGDL--DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ++L D DTL P +++AK +S +K+FFG SQLSQFMDQ NP++E+THKRR+S+LGPG Sbjct: 423 MNLFDFSSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLSSLGPG 482 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI+SLS +A+ NE+GF+ETPYR V + Sbjct: 483 GLNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLISSLSSFAKINEFGFIETPYRIVRE 542 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 GVVTDEI Y++A +E VIAQA++ LDE F E + R KGE V +MDVS Sbjct: 543 GVVTDEIEYMTADQEEQCVIAQASAPLDEYHMFAEPICWARYKGEQFETDTKNVTHMDVS 602 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 +Q+VS+ LIPFLEHDDANRALMG+NMQRQ VP L+ P+VGTG+E A DSG Sbjct: 603 PKQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLKPTAPIVGTGLEARAARDSGAVL 662 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +A GVV YVD +IVI +++ + Y L K+ RSN TCINQ P +G+ Sbjct: 663 IAHEDGVVDYVDGLKIVISPDDNRLEK-----RTYLLKKFIRSNAGTCINQRPLCHVGDK 717 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 ++ GDV+ADGP+TD GE+ALG+N+ VAFMPW GYN+ED+I++SE++++ED +T+++I+E Sbjct: 718 IKAGDVIADGPATDKGEVALGRNVLVAFMPWFGYNYEDAIIISEKLLREDYYTSLYIEEF 777 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +RDTKLG EEIT DIPNV E L L++ GI+ IGAEV GD LVGK+TPK ET+L Sbjct: 778 ELTARDTKLGKEEITRDIPNVSEETLRNLNDDGIIRIGAEVKPGDTLVGKITPKSETELA 837 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALEIEEMQLKQ 955 PEE+LLRAIFG+KASDVKD+SL P G G V+DV+VF+ RD + K L E +LK Sbjct: 838 PEERLLRAIFGDKASDVKDASLIAPPGTEGVVMDVKVFSRRDRLSKTDDELVEEASKLKD 897 Query: 956 AKKDLSEELQILEAGLFSRIRAVLV---AGG-----------------VEAEKLDKLPRD 995 +++ L R+ A+L+ A G + + ++ L ++ Sbjct: 898 IQREYKSNQAQLRTEKHERVGALLLNETAPGNIVHRRTAEIIVDEGDLITQDLIEALEKE 957 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DLAPGVLKIVKVYL 1054 +L + + + L Q+ Y+ E + + + + +GD DL PGV++ VKVY+ Sbjct: 958 SVEDLLMPENDIYTTLRQILHDYEIALQTVETQYKTQLEFMRKGDTDLDPGVIRQVKVYV 1017 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR++Q GDKMAGRHGNKGV+SKI P DMP+ G ++I+LNPLGVPSRMN+GQ+ E Sbjct: 1018 ASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLSTGQTIEIILNPLGVPSRMNMGQLFE 1077 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 THLG+AAK G + + + + K+ E +++A Sbjct: 1078 THLGIAAKHTGITVKSPVFEGFPEEKIWEMMKKA-------------------------- 1111 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 G+P G+ LYDG +GE+F+ V VGY+YMLK Sbjct: 1112 ----GLP------------------------EDGKFFLYDGCSGERFDNSVVVGYIYMLK 1143 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L+HLV DK+HAR+ G YSLVTQQPLGGKAQ GGQRFGEMEVWA EAYGAA+ LQEMLTVK Sbjct: 1144 LSHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQEMLTVK 1203 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDDV GRT++Y++IV G + ++ G PESFNVL+KE++ LG+N+ E Sbjct: 1204 SDDVAGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLNVYTE 1249 >UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Tax=Bacteroidetes RepID=RPOB_SALRD Length = 1287 Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 631/1363 (46%), Positives = 862/1363 (63%), Gaps = 130/1363 (9%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD-PEGQ---YGLEAAFRSVFPIQSYSGNSE 67 R+ F P+V D P L +QL +F F++ D P GL+A F FPI+ Sbjct: 21 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 80 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L++V+Y L P V+EC +G+TYS PL+ LRL + E + EQEVY+G + Sbjct: 81 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLT-SKEEEGGEEAIEAIEQEVYLGTL 139 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQLHRSPG FF+ + HS+G L++AR+IP+RGSW++F Sbjct: 140 PFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKE---IHSNGTELFSARVIPFRGSWMEFS 196 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPERL 246 D +D L+ +DR++K+P T +LRAL +++ E+I+ +F +I D + E L Sbjct: 197 TDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDE----DEFEEHL 252 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 E A+ V +EK IE+ V+ G+VV +E Sbjct: 253 GRELAT-------SVTIEK------------------TIEI-VDEDTGEVVD----EEME 282 Query: 307 GELICAANMELSLDLLAKLSQSGHKRI----ETLFTNDLDHGPYISETLRVDPTNDRLSA 362 E++ A EL +L + R+ E + LD + ETL+ D ++ A Sbjct: 283 REVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLV-ETLQKDSSHTEEEA 341 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L IY +R E P ++A E LFF+EDRYDL VGR + N L + +L+K Sbjct: 342 LEVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTDEKVLTK 401 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 +D++ ++++LI ++NG+ DDIDHL NRR++SVGE +QF +GL R+ R +KER++L Sbjct: 402 EDVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIKERMNLR 461 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 D D P+D++NA+ I + + FFG++QLSQFMDQ N L+E+THKRR+SALGPGGLTRER Sbjct: 462 DADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPGGLTRER 521 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 AGFEVRDVH THYGR+CPIETPEGPNIGL+ SL V++ N++GFLETPYR V DG VTD Sbjct: 522 AGFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVEDGRVTDR 581 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 + YLSA EE +AQAN+ + ++GHF D V CR +G+ + ++VDYMDV+ Q+VS Sbjct: 582 VEYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVAPNQIVS 641 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 ASL+PFL H+DANRALMG+NMQRQ VP LR+D P+VGTG+E VA DS VA+ G Sbjct: 642 PSASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCVVAEGEG 701 Query: 723 VVQYVDASRIVIKVNEDE----MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 VV+YVDA R+V++ +E++ + GE + Y LTK+ R+NQ TC+NQ P V G+ VE Sbjct: 702 VVEYVDAERLVVRYDEEQDKTDLTFGEP-VQEYELTKFRRTNQGTCMNQKPIVQAGDRVE 760 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 G+VL DG + + GELALG+N+ AFMPW+GYN+ED+I++SER+V +D +T++HI+E Sbjct: 761 EGEVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHIEEFEH 820 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 RDTK G EE+T +IPNV E A LDE GIV +GAE+T GDI+VGK+TPKGET TPE Sbjct: 821 EVRDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGETDPTPE 880 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGV-SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 EKLLRAIFG+KA DVKD+SL+ G+ G VID ++F+R E D + ++EE +L+ + Sbjct: 881 EKLLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRR--ELDPASKKMEEKRLENIE 938 Query: 958 KDLSEELQIL----------------EAGLFSRIRAVLVAGGVEAEK--LDKL-PRDRWL 998 D +L L AGL R VL+ G + E+ D++ P D Sbjct: 939 SDHERKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDPSDLST 998 Query: 999 ELGLT-DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 T DEE +Q+ L Y + + E + ++ ++ GD+L GV+++ KVY+A K Sbjct: 999 RAEFTEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARK 1058 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 ++I+ GDKMAGRHGNKGVI+KI P+EDMP+ ++GTPVD+VLNPLGVPSRMN+GQI ET L Sbjct: 1059 KKIEVGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYETLL 1118 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G A +G ++ Sbjct: 1119 GWAGDRLG--------------------------------------------------VK 1128 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 PI FDGA ++ + L+ LP G+++LYDGRTGE F+ TVG +YM+KL H Sbjct: 1129 YATPI----FDGASLEDVGDELEKAGLPRDGKVQLYDGRTGEPFDEKTTVGQIYMMKLEH 1184 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 LV+DKMHARS G YSL+TQQPLGGKAQFGGQR GEMEVWAL AYGA+ TLQEMLT KSDD Sbjct: 1185 LVEDKMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLTFKSDD 1244 Query: 1298 VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 V GR++ Y++IV G + PG+PESFNVL++E++ LG+ + L+ Sbjct: 1245 VEGRSEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1287 >UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Tax=Bacteria RepID=RPOB_CHLPD Length = 1312 Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 646/1404 (46%), Positives = 853/1404 (60%), Gaps = 192/1404 (13%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQD-PEGQ---YGLEAAFRSVFPIQSYSGNSELQ 69 DF K V+D P LL +QLDSF FI+ P + GLE RS FPI G L+ Sbjct: 22 DFSKIQSVIDPPDLLKVQLDSFHNFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLE 81 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 Y+SY +P + V++C RG+TY L+VKL+L Y+ E E K+ +QEVY+G IP Sbjct: 82 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLS-YKDEPDEADWKETIQQEVYLGRIPY 140 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 MT+ GTF++NG ERV+V+QLHRSPGV F H +GK +Y+A+I+P RGSW++F+ D Sbjct: 141 MTERGTFIVNGAERVVVAQLHRSPGVVFSE---AIHPNGKKMYSAKIVPTRGSWIEFQTD 197 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + +FV ID+++ T +LRA+ + E IL LF +LV E Sbjct: 198 INNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLF---------------DLVEE---- 238 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 VK+ E + G+ +A D +D TGE Sbjct: 239 ---------------------------------VKITSAKKEQLIGQYLASDIVDMQTGE 265 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETL--FTNDLDHGP---YISETLRVDPTNDRLSAL 363 ++ +A ++ D++ ++ +G+K + + F+ + D GP I T+ D + AL Sbjct: 266 VV-SARTAITEDIVDQIIAAGYKSVRVMKSFSGN-DKGPDKSIIINTILNDNSATEEEAL 323 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG----- 418 +Y +R E P +AA S E FF++ +YDL VGR + + L +E E G Sbjct: 324 EIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLSKEFEELHGYLDGQ 383 Query: 419 -------------------------------ILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 +L+ DII V+ LI + NG+ EVDD+DH Sbjct: 384 PELKKLSDTIYEKILHTIQSFSDEPIGGDILVLTHYDIIAVIYYLIKLVNGQAEVDDVDH 443 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 L NRR+RSVGE QF +GL R+ + V+E+L+ D D + P D+INA+ +S+ V FF Sbjct: 444 LANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFA 503 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 +SQLSQFMDQ NPL+E+T+KRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGP Sbjct: 504 TSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGP 563 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 NIGLI+SLSVYA+ N+ GF++TPYR VT+GVVTD + LSA +E N + + LDE Sbjct: 564 NIGLISSLSVYAEINDKGFIQTPYRVVTNGVVTDTVLMLSAEDEENKITVPVSIPLDENM 623 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 + V R+KG+ L + V+YMDVS Q+VS A+LIPFLEHDD NRALMGANMQR Sbjct: 624 KIAIESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQR 683 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED-------E 740 QAVP L A+ P+VGTGME VA DS +A+ G+V V A I ++ + D Sbjct: 684 QAVPLLTAEAPIVGTGMESKVARDSRSVILAEGDGIVDDVTAEYIKVRYDIDADTDVRLS 743 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 + + G+ Y L K+ RSNQ+TCI+Q P + +G+ V +GDVLAD ST+ GELALG+N+ Sbjct: 744 LLDPDEGLKTYKLIKFKRSNQDTCISQKPLIHIGQRVSKGDVLADSSSTENGELALGKNV 803 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 VAFMPW GYNFED+I++SER+V +D FT+IHI E RDTK G E+ T DI NV E Sbjct: 804 LVAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSED 863 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 AL LDE+GIV IGAEV DILVGK+TPKGE+ TPEEKLLRAIFG+K+SDVKD+S+ V Sbjct: 864 ALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHV 923 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEI-EEMQLKQAKKDLSEE----------LQILE- 968 P G+ G VI ++F+R K K L+I E++++ + K D E Q+LE Sbjct: 924 PAGMKGIVIKTKLFSR----KKKVGLDIKEKIEILEKKYDYKEYDLRKKFLKRLKQLLEG 979 Query: 969 ---AGLFSRIRAVLVAGGV-----EAEKLDKLPRDRWLEL--GLTDEEKQNQLEQLAEQY 1018 G++S +LVA E+ +P ++ G+T EK N+ L + Sbjct: 980 KTSTGIYSDKGKLLVAEDAVYDDSVLERFTAIPFLESIDFVKGVTQSEKVNENVMLLVKE 1039 Query: 1019 DELK-HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 LK + + + ++ K+ GD+L PG+ ++ KVY+A KR+IQ GDKMAGRHGNKGV+ Sbjct: 1040 FRLKLKDLNDERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVG 1099 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 KI PIEDMP+ ENG PVDIVLNPLGVPSRMNIGQ+ ET LG A K +G K Sbjct: 1100 KILPIEDMPFMENGKPVDIVLNPLGVPSRMNIGQLYETSLGWAGKELGVKFKT------- 1152 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 PI F+GA E+++ Sbjct: 1153 -------------------------------------------PI----FNGATYQEVQQ 1165 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L+ LP+ G++ LYDGRTGEQF+ VT+GY+YMLKL+HLVDDK+HARSTG YSL+TQQ Sbjct: 1166 ELEKAGLPSHGKVSLYDGRTGEQFDDEVTIGYIYMLKLSHLVDDKIHARSTGPYSLITQQ 1225 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGKAQFGGQRFGEMEVWALEAYGAA L+EMLTVKSDDV GR K Y+ IV G + EP Sbjct: 1226 PLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEP 1285 Query: 1318 GMPESFNVLLKEIRSLGINIELED 1341 G PESFNVL++E++ LG+ I ++D Sbjct: 1286 GTPESFNVLVRELQGLGLEIRIDD 1309 >UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria RepID=B2KEN1_ELUMP Length = 1270 Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 627/1368 (45%), Positives = 852/1368 (62%), Gaps = 173/1368 (12%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQD--PEGQ--YGLEAAFRSVFPIQSYSGNSELQ 69 +FG+ L +P LL +Q +SF F++ D P + GL+AAF VFPI++ G+ +L+ Sbjct: 5 NFGQISSKLSLPDLLDMQKESFVDFLQLDVAPTKRELKGLQAAFEDVFPIEAPDGSMKLE 64 Query: 70 YVSYRLGEPVFDV-QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 +V Y LG P + Q+ +R TYSAP++ +RL + +R+ G +K+ EQ+V + ++P Sbjct: 65 FVKYELGAPRYSTPQQAALRDGTYSAPMKAVMRLSVKKRD---GKLKEASEQDVTLCDLP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS-GKVLYNARIIPYRGSWLDFE 187 LMTD G FV NG ERV+VSQLHRSPG+ F+ D+ K S+ GK LY ARIIPYRG+W++F Sbjct: 122 LMTDAGCFVFNGAERVVVSQLHRSPGIIFEEDEEKKQSTLGKKLYVARIIPYRGAWIEFS 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 FD + L+VRIDR++K+ AT LRA T QI+ F+ Sbjct: 182 FDIMNALWVRIDRKKKVLATTFLRACGLETNAQIIQAFY--------------------- 220 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 D+E DV++ ++ + G+ A D +D +T Sbjct: 221 -------DVE------------------------DVEVKPAEIDNVVGRYAADDIVDPAT 249 Query: 307 GELIC----AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL--RVDPTNDRL 360 GE++ A M + + ++ + K+++ + N P I TL R D Sbjct: 250 GEVLWNLDDKAAMPMDDKIFKEMVERKIKKVKIISGNPRQDDPGILATLENRKDQIRTSK 309 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSE-DRYDLSAVGRMKFNRSL---------- 409 A +IY+ MR + +E AE+ +NL F RYDLS VGR K N+ Sbjct: 310 EAQADIYKKMRGQDFVVKEQAEAFLDNLIFDNIRRYDLSYVGRYKINKKFASLFDIVENL 369 Query: 410 ----LREEIEGSGILSKDDIIDVMKKLIDIRNGK------GE-----VDDIDHLGNRRIR 454 + + LS +DII +K L+ + G+ GE DDIDHLGNRR+R Sbjct: 370 KFKKFTKPTDKRRTLSAEDIIVTVKYLLALNAGEDAQKMYGEEIIFKTDDIDHLGNRRVR 429 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 +GE+ ENQ RVGL ++ + ++R++ +L + P+ ++NA+P+ A +K+FFG+SQLSQF Sbjct: 430 GIGELLENQIRVGLSQMAKTARDRMN-KELASHTPRALVNAQPVQAIIKKFFGTSQLSQF 488 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 MDQ NPLSE+THKRR+SALGPGGL R+RAGFEVRDVH THYGRVCPIETPEGPNIGLI S Sbjct: 489 MDQINPLSELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGLITS 548 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV 634 L+ Y++ N+YG +ETPYRKV G VTD YL+A +E + ++AQ+N+ L + G D+V Sbjct: 549 LACYSKVNKYGLIETPYRKVNSGKVTDNFEYLTADQEDDLMVAQSNTPLTDSGKINTDMV 608 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 +CR + + + S +VDYMDVS QV+SV A+LIPFLEHDDANRALMG NMQRQ VP L Sbjct: 609 SCRVRSDYPIVSPSEVDYMDVSPLQVISVSAALIPFLEHDDANRALMGCNMQRQGVPLLL 668 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI-DIYNL 753 + PLVGTG+E VA DSG T A + G V + A +I ++ P E G +IY+L Sbjct: 669 TEAPLVGTGIEHEVARDSGATISAAKPGRVVFAAADKIAVE-------PLEGGAPEIYDL 721 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 KY RSNQ+TCINQ P V G+ V++G VLADGP+ G LALG+N+ V FM W GYN+E Sbjct: 722 IKYKRSNQDTCINQRPLVKAGDIVKKGTVLADGPAMKDGFLALGKNLLVGFMSWEGYNYE 781 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 D+ILVS ++V+ED FT++H+ E + +R+TKLG EEIT DIPN+G AL+ LD GIV Sbjct: 782 DAILVSHKLVKEDVFTSVHLHEFSIDARNTKLGAEEITRDIPNIGAEALAHLDADGIVIP 841 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 V GDILVGKVTPKGE QLTPEE+LL+ IFG+KA DV D+SLRVP G SG VI +V Sbjct: 842 STVVEPGDILVGKVTPKGEQQLTPEERLLKVIFGKKADDVVDASLRVPPGTSGKVIGTRV 901 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 F R K+K E+ ++K + + + L+ L+ E KL Sbjct: 902 FVR----KEKLTKAEEKARIKALEDEKTTNLETLK----------------EQRKLALTN 941 Query: 994 -RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 +D ++ +EE+ N L + E+ + +FE+++E + QGD+LA V K VKV Sbjct: 942 IKDSNVKDAKKEEERINALYKKLEK--RVLEDFEREMEFSK----QGDELAVTVNKSVKV 995 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 ++A KR++ GDK++GRHGNKGV++KI P EDMP+ +GTP+DIVL+PLG+PSRMN+GQ+ Sbjct: 996 FIASKRKLMVGDKLSGRHGNKGVVAKILPEEDMPFLPDGTPLDIVLSPLGIPSRMNVGQL 1055 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 ET LG AAK +G Y+ V D T EE +R Sbjct: 1056 FETMLGWAAKNLG-----------------------YNAATPV---FDGPT---EETVR- 1085 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS-GQIRLYDGRTGEQFERPVTVGYMY 1231 E ++K AK+A I++ + LP +I LYDGRTG+ FE VT+GYMY Sbjct: 1086 -EEIKK-----------AKKALIEKGVPEKHLPDDYCRITLYDGRTGQPFEEKVTIGYMY 1133 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 ++KL HLV+DK+HARSTG YSL+T+QPLGGKAQFGGQRFGEMEVWA+E YGA YTLQE L Sbjct: 1134 IMKLIHLVEDKVHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAIEGYGATYTLQEFL 1193 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TVKSDD GRTKMY++IV G +PG+PESF VL+KE+++LG+++EL Sbjct: 1194 TVKSDDFTGRTKMYESIVRGEAPQQPGVPESFKVLVKELQALGLSVEL 1241 >UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC1_9BACT Length = 1258 Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 608/1356 (44%), Positives = 847/1356 (62%), Gaps = 158/1356 (11%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSELQYVSYR 74 P+V ++P LL++Q+DSF F+++D Q GL+A F ++FP++ GN L+++ Y Sbjct: 20 PEV-EIPNLLAMQVDSFNDFLQKDIHPQRREKKGLQAVFENIFPLEDTKGNFLLEFIEYN 78 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 + + + ++EC+ R ++Y APL+ K+RL ++E KD EQEV++GEIPL+T+ G Sbjct: 79 VLQEKYSLEECRERNLSYQAPLKAKMRLSVFENREGVREHKDTLEQEVFLGEIPLITEQG 138 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 TFVING ERVI+SQL RSPGVFF +K H SGK LY+A++IPY GSWLDF+ D D + Sbjct: 139 TFVINGAERVIISQLQRSPGVFFSEEK---HPSGKTLYSAKVIPYSGSWLDFDIDIHDVM 195 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 FV ID+RRKLP T + RA+ +T + L F K E+L + A Sbjct: 196 FVHIDKRRKLPVTTLFRAIGISTNEDLRKTFYK---------------SEKLNLKEA--- 237 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 KGR + A D ++ E I AN Sbjct: 238 ----------KGRHLFA----------------------------DIYEKGNPEPIAMAN 259 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 +++ L+ LS+ ++E + N + T+ DPT ++ AL +IY ++RPGE Sbjct: 260 EQITDSLIKFLSERKITKVEVIDYNYEIARKVLENTMAKDPTTNQEEALKKIYNLIRPGE 319 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 EAA+ L + +FF+E RY+L VGR K N L L+ +D + + K LI+ Sbjct: 320 DAPLEAAKQLVDRMFFNEKRYNLGEVGRYKINSRLGINVDPKIMTLTVEDFVYIFKTLIN 379 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 I + + EVDDID+L NRR+R+VGE+ + Q+ +G+ V R ++ER+++ ++D + D++N Sbjct: 380 IYHDEDEVDDIDNLANRRVRTVGELLQEQYTIGMAMVARIIQERMAISNIDEVTVHDLVN 439 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + + + V+ FF + QLSQFM+Q NPL+ + HKR +SALGPGGL RERAGFEVRDVH +H Sbjct: 440 SNALISVVQSFFLTGQLSQFMEQTNPLAALRHKRALSALGPGGLARERAGFEVRDVHSSH 499 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CPIETPEGPNIGLI S ++Y++ N +GFLETPYRKV DG +TDE YL A +E Y Sbjct: 500 YGRICPIETPEGPNIGLIVSPAIYSRINHFGFLETPYRKVVDGCITDEYEYLDASQEEKY 559 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 +IAQ++ +LD+ ++++ R +GE S + V YMDV+ QQ+VSV A+LIPFLEHD Sbjct: 560 IIAQSDVHLDDNRRITDEMIFARDRGEFVQVSPNLVHYMDVAPQQMVSVSAALIPFLEHD 619 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DANRALMG+NMQRQAVP + PLVGTGME+ ++D+ AVA G+V V ++ I + Sbjct: 620 DANRALMGSNMQRQAVPLINPQAPLVGTGMEKIASMDTSSIAVAPYDGIVTKVTSAFIDL 679 Query: 735 K-VNE-DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 K +NE DE Y G I+ L K+ R+NQ+TCINQ P V +G+ V++G ++DG + Sbjct: 680 KPLNEKDEAYYLSTGNRIH-LKKFVRTNQDTCINQRPIVRVGDTVKKGQPISDGACVEDN 738 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 LALG N+ VAFMPW GYN+ED++++SE+V +ED T+I+I+EL + R+ K G EE+ Sbjct: 739 RLALGTNLMVAFMPWYGYNYEDAVILSEKVAREDTLTSIYIEELEVLVRNVKNGREELAY 798 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG-ETQLTPEEKLLRAIFGEKAS 911 DIPNV AL LD++GI+ +G+ + GDI+VGKVTPK E +PEE L+RA+FG++A Sbjct: 799 DIPNVPAQALRNLDKTGIIRVGSVIHAGDIIVGKVTPKSVEIDPSPEENLMRALFGDRAG 858 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTR------------DGVEKDKRALEIEEMQLKQAKKD 959 D +SSL+ G+ G VIDV+VF+R D +EK K L + ++++ K++ Sbjct: 859 DFTNSSLKAKPGMEGVVIDVKVFSRLEEGSDLEEENEDKIEKLKEELALRRSKIEEFKEE 918 Query: 960 -LSEEL--QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW----LELGLTDEEKQN--- 1009 LS L QI + + +A G + K D L R + L++ L ++ + N Sbjct: 919 KLSAVLVGQIAKNIWDEKTNIPFIAPGKKITKQD-LKRINFKKLDLDVELVEDREVNDYI 977 Query: 1010 ------QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 +++Q EQ D + + R +I GD+L GV K+VKVY+A KR+I+ G Sbjct: 978 YSQIVLKIKQSLEQSDNI-------YKKSRERIKHGDELQYGVRKMVKVYVAKKRKIEVG 1030 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DKMAGRHGNKGVIS I PIEDMP+ E+GTPVDIVLNPLGVPSRMNIGQI+ETHLG AAK Sbjct: 1031 DKMAGRHGNKGVISIIAPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQIMETHLGWAAKT 1090 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 +G ++ + +D GA S+E+++ Sbjct: 1091 LGFEVETPI----------------FD-GA-----------SNEDIV------------- 1109 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 EL K G LP G+ LYDG++GE F+ VTVG +YM+KLNHLV DKM Sbjct: 1110 ------------SELRKAG-LPEDGKTVLYDGKSGEPFKERVTVGIIYMMKLNHLVADKM 1156 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HARSTG YSL+TQQPLGGKAQ GGQR GEMEVWALEAYGAA L+EMLT+KSDDV+GR Sbjct: 1157 HARSTGPYSLITQQPLGGKAQHGGQRLGEMEVWALEAYGAASVLEEMLTIKSDDVDGRNN 1216 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 +K I G++ PG+PESFNVL+ E++SLG +IE Sbjct: 1217 AFKAITRGDNPPPPGVPESFNVLISELKSLGFDIEF 1252 >UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax=Planctomycetales RepID=RPOB_RHOBA Length = 1240 Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 618/1364 (45%), Positives = 833/1364 (61%), Gaps = 167/1364 (12%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSY 62 E IRK FG D+P L ++Q S+ F+++D +GLE+ R +FPI SY Sbjct: 10 EPTSIRK-FGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVLREIFPIASY 68 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 GN+ L+Y+ Y LG+P + +QEC+ +TY PLR+ LRL RE P E+EV Sbjct: 69 DGNTTLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRL---NREEP-------IEEEV 118 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 Y+G++P+M G F+ING ERV+VSQLHRSPGV F ++ T + + L + R+IP RGS Sbjct: 119 YLGDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFVLEQDTT--TDRKLPSCRVIPERGS 176 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALN--YTTE-QILDLFFEKVIFEIRDNKLQM 239 W++ KD L VRID+ K AT++LRA++ Y+T+ +L F+E Sbjct: 177 WIEVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLSAFYE------------- 223 Query: 240 ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 G + V G+ T K + K+ V Y +G Sbjct: 224 ------------------TGTIKVNGGKDAT--------KIENKIAVDDVVYPSGH---- 253 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 E GE+I A +++ +L + +G +E + DL P I TL D T Sbjct: 254 ----ERAGEIIVEAGYKITTELSETICNAGVTSVEAM---DLPKVPLIFNTLADDNTASH 306 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL+ IY+ +RPG PP E A +LF+ F+ ++RY L VGR + NR L E Sbjct: 307 EEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLGLGVEETVMT 366 Query: 420 LSKDDIIDVMKKLIDI--RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 L DD+I ++ LID+ + E+DDIDHLGNRR+R++ E+A + R G +++ R V+E Sbjct: 367 LRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGFLKLRRTVQE 426 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+S+ D + P+ +IN K +SAA+ FFG +LSQ +DQ NPLS++ H+RR+SALGPGG Sbjct: 427 RMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLAHERRLSALGPGG 486 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L R+RAGFEVRDVH +HYGR+CPIETPEG NIGLI+SL++YA ++YGFL TP+RKV DG Sbjct: 487 LNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLCTPFRKVIDG 546 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 ++DE +L A EEG +A A++ + + + R + + + +QV +MDV+ Sbjct: 547 KISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPEQVSFMDVAP 606 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 Q+V V A LIPFLEHDDANRALMG+NMQRQAVP L + P+VGTGMER VA +S + Sbjct: 607 AQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREVAKNSAMVVR 666 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+R G V Y DA+RI E G D Y L KY N+ TC NQ P +++G+ V Sbjct: 667 ARRAGKVTYADATRI------------EIGSDHYPLKKYQGLNERTCQNQKPLITVGDKV 714 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+G ++ADG +T GELALG+N+ V FM ++G+N+ED+I++SE +V+ D +T+IHI++ Sbjct: 715 EKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTYTSIHIEDFD 774 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R+TKLG EE T DIPNV E AL LD++GIV G V GDILVGKV+PK +T+LTP Sbjct: 775 VEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVSPKSKTELTP 834 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV--EKDKRALEIEEMQLKQ 955 EEKLL AIFG DVK+ SL VP+G+ G VID Q F+R E +++A E E LKQ Sbjct: 835 EEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLGEDERKAFERE---LKQ 891 Query: 956 AKKDLSEELQILEAGLF-SRIRAVLVAGGVEAEKLDKLP------------RDRWLELGL 1002 + + +EE+ A F S IR + A GV+ + P R L L Sbjct: 892 HETEGNEEI----ASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAERATSFRLEL 947 Query: 1003 T-----DEEKQNQLEQLAE-QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 DEEK+ E++ + Q+ ++ +++ + K + +GD+L GVL++VK+Y+A Sbjct: 948 VLEQIEDEEKRKAAEKVHQTQWQNVEQAIDER-DRKLNSMKRGDELRSGVLQMVKIYIAT 1006 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 KR I GDKMAGRHGNKGVI+KI PIEDMP+ +GTP+ I+LNPLGVPSRMN+GQILETH Sbjct: 1007 KRTISVGDKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETH 1066 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 LG A AKL Sbjct: 1067 LGWAG-----------------AKL----------------------------------- 1074 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 G TP+FDGA E+EI + L LP G+IRL DGRTGE E+ TVGY+YMLKL+ Sbjct: 1075 --GFQALTPIFDGASESEINDCLAEAGLPAHGKIRLTDGRTGEPMEQETTVGYIYMLKLH 1132 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 HLVDDK+HARSTG YSL+TQQPLGGKA+FGGQRFGEMEVWALEAYGAAY LQE+LTVKSD Sbjct: 1133 HLVDDKVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSD 1192 Query: 1297 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 DV GRTK+Y+++V G + +E G P SF+VL EIR L +N++LE Sbjct: 1193 DVEGRTKIYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLE 1236 >UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria RepID=C1A6N7_GEMAT Length = 1522 Score = 1029 bits (2661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/1186 (47%), Positives = 769/1186 (64%), Gaps = 88/1186 (7%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSELQY 70 F K +D+P+LL IQ +F+ ++ D Q GLE F+ +FPI N L++ Sbjct: 6 FAKLETGMDMPHLLDIQTRAFESLLQLDAASQEREDVGLERVFKDLFPITDVHENFSLEF 65 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 V Y LGEP + V EC R +TYSAPL+ L+LVI+E ++I E+EVY+GE+PL+ Sbjct: 66 VRYSLGEPKYTVAECIERDMTYSAPLKATLQLVIFEDTGDGKRPRNIIEKEVYLGELPLL 125 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 T+ GTFVING ERVIVSQLHRSPGV F+ TH +G+ L ++RIIP+RGSW++F D Sbjct: 126 TELGTFVINGAERVIVSQLHRSPGVVFEE---STHPNGQRLLSSRIIPFRGSWVEFTVDI 182 Query: 191 KDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF------EIRDNKLQM--EL 241 D ++V ID+++K PAT +LRA Y IL LFF + E R+++ ++ + Sbjct: 183 HDVIYVHIDKKKKFPATALLRAFGYGENRDILRLFFAERDLDLTKKRETRNDQREVLGAI 242 Query: 242 VPE--RLRGETASFDI-------------EANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 + E L GE + D + ++ V +G +T + +L + +K ++ Sbjct: 243 IAEDITLEGEVTAADAPKPKTKKAKAERERSEAELLVREGDELTEEVLNRLVRQGIKTVK 302 Query: 287 VPVEYI-----------------AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 + Y +++A+D ID+ TGE++ + L+ ++ ++ ++ Sbjct: 303 MFASYTQIDLRDEQDAIDRGEREVRRMLARDVIDQDTGEVVAEKDTTLTDAVIKRIRKAD 362 Query: 330 HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 ++ + I TL DPT AL +IY ++RPG+ P RE A+ E LF Sbjct: 363 IVKVFVFVASGRAESTLIKNTLAKDPTKAEEEALKQIYALLRPGDAPNRETAKQALERLF 422 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 FS RYDL VGR K N+ L + +L+K+D +++M++L+++ G+G+VDDID LG Sbjct: 423 FSPKRYDLGRVGRYKINQRLRLNTPMRTTVLTKEDFVEIMRQLVELHEGRGDVDDIDQLG 482 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-DLDTLMPQDMINAKPISAAVKEFFGS 508 NRRIRSVGE+ NQF VGL R+ R VKER+S+ D + + D++NA+ +SA ++ FFGS Sbjct: 483 NRRIRSVGELIANQFSVGLSRMARLVKERMSINTDPEKISLDDLVNARTVSAVIQAFFGS 542 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQLSQFMDQ NPL+E+THKRR+SALGPGGLTRERAGFEVRDVH + YGR+CPIETPEGPN Sbjct: 543 SQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSQYGRMCPIETPEGPN 602 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 IGLI SL+ +AQ N+ GF+ETPYR V +G VT EI +L A E + +IAQANS L+ +G Sbjct: 603 IGLITSLACFAQVNDLGFIETPYRIVKEGRVTGEIVWLDANREEDAIIAQANSKLNPDGT 662 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 FV+DLV R +G+ L +DYMDV+ +Q+VS+ A+LIPFLEHDDANRALMG+NMQRQ Sbjct: 663 FVDDLVLSRKRGDLPLEPPMNIDYMDVAPEQLVSIAAALIPFLEHDDANRALMGSNMQRQ 722 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK--VNEDEMYPGE- 745 AVP L P VGTG+E VAVDSG +A+R GVV V A I+I +N++ + G Sbjct: 723 AVPLLNPATPFVGTGLEATVAVDSGAVIIARRPGVVTNVTADEIIIDAGLNQEAVDDGRP 782 Query: 746 ----AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 +D Y L KY R+NQ+T INQ P V +G+ V +G+VLADG +T++G+LALG+N+ Sbjct: 783 LTRLGQLDRYRLKKYWRTNQDTAINQRPLVRMGQTVAKGEVLADGAATEMGQLALGRNVT 842 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 VAFMPW G+NFED+I++SER+V+ D F++IHIQEL RDTK G EEIT +IPNV E + Sbjct: 843 VAFMPWYGHNFEDAIVLSERLVKFDVFSSIHIQELELHVRDTKRGQEEITREIPNVAEES 902 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L LDE GIV IGA V GDILVGK+TPKGET+L+PEEKLL AIFGEKA DVKDSSL+V Sbjct: 903 LVDLDERGIVRIGAAVKAGDILVGKITPKGETELSPEEKLLTAIFGEKAKDVKDSSLKVS 962 Query: 922 NGVSGTVIDVQVFTR---DGVEKDK-------RALEIEEMQLKQAKKDLSEELQILEAGL 971 G+ G VIDV++F+R VEKD+ R LE EE +D +E ++LE Sbjct: 963 PGMEGVVIDVKIFSRVEDQVVEKDRGERIGEVRRLEGEEKIRVNEVRD-AELSRLLEG-- 1019 Query: 972 FSRIRAVLVAGGVEA----------EKLDKLPRDRWLELGLT-----DEEKQNQLEQLAE 1016 + L AG VE E LD L R+ L L +++ +++ + + Sbjct: 1020 -ETVALALKAGTVEEAIGAGTTLTREILDGL---RFATLDLKTFRVENKKANDRVRDILD 1075 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076 E K E++ E + +I Q D+L PGV+++VKVYLA KR+I GDKMAGRHGNKG++ Sbjct: 1076 AAAEEKARIEERAEDRIDRILQPDELPPGVIQLVKVYLAEKRKISVGDKMAGRHGNKGIV 1135 Query: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 ++I P EDMP+ NG PVDIVLNPLGVPSRMN+GQILETHLG AAK Sbjct: 1136 ARIVPEEDMPFLPNGRPVDIVLNPLGVPSRMNVGQILETHLGWAAK 1181 Score = 228 bits (582), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 109/167 (65%), Positives = 134/167 (80%), Gaps = 4/167 (2%) Query: 1177 RKGMPIATPVFDGAKEAEI----KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 R G P + G K+A++ EL++L L +G++RL DGRTGE F PVTVG +YM Sbjct: 1332 RIGQPALAAMLVGGKDADVDAAASELIRLAGLTPTGKVRLRDGRTGETFTAPVTVGEIYM 1391 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 LKL+HLVDDK+HARS G YSLVTQQPL GKAQFGGQRFGEMEVWALEAYGAA+TLQE+LT Sbjct: 1392 LKLSHLVDDKIHARSIGPYSLVTQQPLAGKAQFGGQRFGEMEVWALEAYGAAHTLQEILT 1451 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 VKSDDVNGR+++Y+ IV G + EPG+PESFNVL+KE+++LGI + L Sbjct: 1452 VKSDDVNGRSRVYEAIVKGQNLPEPGIPESFNVLVKELQALGIKVTL 1498 >UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Tax=Aquificales RepID=RPOB_AQUPY Length = 1469 Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/1070 (51%), Positives = 727/1070 (67%), Gaps = 94/1070 (8%) Query: 362 ALVEIYRMMRPGEPPTREAAESLFE------NLFFSE-DRYDLSAVGRMKFN-------- 406 L+E+Y+ +R E T E +S+ E N+FF + RYDLS VGR+K N Sbjct: 383 GLMEMYKKLRHIEALTMEI-DSIIERARVYFNVFFRDLKRYDLSRVGRVKINAKVHNIPK 441 Query: 407 --------------------------------RSLLREEIEG-SGILSKD---------- 423 + LL+E + I KD Sbjct: 442 VLKPTDIDLLDNLPPLALAEDYGEYKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLL 501 Query: 424 --DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 D+I+++K LID+R+G+ + DDI HLGNRR+RSVGE+ ENQ R+G+ ++E+ ++R + Sbjct: 502 PIDLINILKYLIDLRHGRVKKDDIAHLGNRRVRSVGELLENQARLGIAKMEKVFRDRSAT 561 Query: 482 --GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 + L PQD IN + ++ A+ +F + QLSQ++D NPLSE+THKRR+SALGPGGLT Sbjct: 562 IHPEQPDLKPQDFINPRYVTNAIADFLKTGQLSQYLDNTNPLSELTHKRRLSALGPGGLT 621 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RE A FE+RDVHP+HYGR+CPIETPEG NIGL+ S +VYA+ NEYGFL TPYRKV +G V Sbjct: 622 RESAKFEIRDVHPSHYGRICPIETPEGQNIGLVTSPTVYARVNEYGFLITPYRKVENGRV 681 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 TD+I +L+A EE NYVIAQ+ DEEG + V R K + L +QVDY+DVS +Q Sbjct: 682 TDKIEWLAAYEEENYVIAQSTPT-DEEGRIKAEFVLARHKNDIRLVKPEQVDYIDVSPRQ 740 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 V+S +SLIPFLEHDDANRALMG+NMQRQAVP + PLVGTGME+ +A DS VAK Sbjct: 741 VISPSSSLIPFLEHDDANRALMGSNMQRQAVPLIFTQAPLVGTGMEKKIARDSHAVVVAK 800 Query: 720 RGGVVQYVDASRIVIKVNEDEMY---PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 RGGVV+ VD S+I+++VN +E+ P + GIDIY L K+ R+NQ TC+NQ P V GE Sbjct: 801 RGGVVEEVDGSKIIVRVNPEEINLEDPLDIGIDIYELRKFERTNQKTCVNQRPIVKKGER 860 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 VE+G ++ADG STD GELALG+++ VAFMPW GYNFED+I++SER+V+ED +T+IHI+EL Sbjct: 861 VEKGQIIADGHSTDRGELALGKDVLVAFMPWRGYNFEDAIVISERLVKEDVYTSIHIEEL 920 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +R+TK+G EEIT IP V E AL+ LDE GIV +G V GDILVGKVTPKGET+LT Sbjct: 921 EVEARETKVGDEEITRQIPGVPERALAHLDEHGIVRVGTYVKPGDILVGKVTPKGETRLT 980 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG--VEKDKRALEIEEMQLK 954 PEEKLL+AIFGEK DVKD+SLR P GV G VIDVQVFTR G KD A ++E +L+ Sbjct: 981 PEEKLLQAIFGEKTKDVKDASLRCPPGVEGIVIDVQVFTRKGGKAAKDMLAQKVEREELE 1040 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVE----------------AEKLDKLPRDRWL 998 +++L ++ +L +G+ ++ +++ + E++ K L Sbjct: 1041 ALERELEKKKNLLMSGVEKVLKGLILGKKTDKDVKIGKKEIKKGTEITEEIFKEYSQYIL 1100 Query: 999 ---ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 E TDEE ++ ++ + +K + K+ + + DL PGV+ +VKV++A Sbjct: 1101 ARPENFFTDEELIKKIREIYTRSRTQIDMLQKVYQEKKETLLKRRDLPPGVITLVKVFIA 1160 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 KR+I+ GDKMAGRHGNKGVIS + P+EDMP+ +GTPVDIVLNPLGVPSRMN+GQILET Sbjct: 1161 NKRKIKVGDKMAGRHGNKGVISVVLPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILET 1220 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD-----LSTFSDEEVM 1170 HLG AAK +G KI M+++ ++ + E+++ Y +G + + L++ S+EE Sbjct: 1221 HLGWAAKELGKKIGEMIEKGRDRKAITEYLKEIYAVGDENGENAKFIEEFLNSLSEEEFW 1280 Query: 1171 RLAENL-RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 + + ++G+P+ATP F+GA E +KELLK LP SG+ LYDGRTGE F+ VTVGY Sbjct: 1281 SVVRDYAQRGIPMATPAFEGADEKAVKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGY 1340 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 M+MLKL H+VDDK+HAR+TG YSLVTQQPLGG+AQFGGQR GEMEVWALEA+GAAYTLQE Sbjct: 1341 MHMLKLIHMVDDKIHARATGPYSLVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQE 1400 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 MLTVKSDDV GR+K+Y+ IV G + PG+PESF VL++E++ L +N++ Sbjct: 1401 MLTVKSDDVEGRSKVYEAIVKGKYTYTPGIPESFKVLVRELKGLSLNVKC 1450 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/257 (38%), Positives = 142/257 (55%), Gaps = 45/257 (17%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ--DP--EGQYGLEAAFRSVFPIQSYSGNSE 67 RK FG+R ++L+ PYLLSI +SF+ F++ +P GLE FR+ FP + N Sbjct: 8 RKFFGRRTEILEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLEHIFRTSFPFKDPDENFI 67 Query: 68 LQYVSYRLGE--------------------------------PVFDVQECQIRGVTYSAP 95 L+Y+ Y +G+ F +EC+++G+TYSAP Sbjct: 68 LEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCPECGAKLVYKEKFTPEECKLKGLTYSAP 127 Query: 96 LRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 LRV L+L + + + ++VY GE+PLMTDNG+F+INGTER+I++QL RS GV Sbjct: 128 LRVMLQL----KAKTKNGYRTFPPRKVYFGEVPLMTDNGSFIINGTERIIINQLIRSSGV 183 Query: 156 FFD--SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF-VRIDRRRKLPATIILRA 212 FFD +K K + ++LY A IIP +GS ++FE +L RID R+KL A +LRA Sbjct: 184 FFDEKEEKQKDATITRILYRASIIPDKGSRVEFELSGATDLISARID-RKKLSAISVLRA 242 Query: 213 LNY-TTEQILDLFFEKV 228 T IL F+E V Sbjct: 243 FGLETAYDILKPFYEGV 259 >UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria RepID=C6HVV1_9BACT Length = 1729 Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/1000 (52%), Positives = 689/1000 (68%), Gaps = 85/1000 (8%) Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 A+VEIY+ +RPGE P E A F+ FF+ RYDLS+VGR+K N L E + +L+ Sbjct: 784 AVVEIYKKIRPGEVPHVETARQFFDQSFFNSKRYDLSSVGRLKLNSKLGIRESLSNRLLT 843 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 K DI++V++ ++D+ KGE+DDIDHLGNRR+RSVGE+ ENQFR+GLVR+ERA+KERL+L Sbjct: 844 KSDIVEVIRYMVDLLENKGEIDDIDHLGNRRVRSVGELLENQFRIGLVRMERAIKERLNL 903 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541 GD ++++ D IN KP++A +KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGLTRE Sbjct: 904 GDPESVISSDPINVKPVTAIIKEFFGSSQLSQFMDQTNPLAEVTHKRRLSALGPGGLTRE 963 Query: 542 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 RAGFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N++GF+E+P R V +G+ Sbjct: 964 RAGFEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGFIESPVRVVENGIAKP 1023 Query: 602 EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 EI YLSA++ Y+IAQA++ LD+ G E V+ R KG+ S DQV Y+DV+ QQ+V Sbjct: 1024 EIVYLSAMDGDKYIIAQASTKLDQNGALTEPQVSARFKGDFISVSPDQVQYIDVAPQQIV 1083 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 SV +LIPFLEH+DANRALMG+NMQRQAVP LR PLVGTGME+ VA DSG A Sbjct: 1084 SVATALIPFLEHNDANRALMGSNMQRQAVPLLRPSAPLVGTGMEKVVARDSGYVIYATED 1143 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G V +D + +K G+ Y L K+ RSNQNTC+NQ +S ++GD Sbjct: 1144 GEVVKIDGTSFTVKYKN-------TGLKTYPLIKFRRSNQNTCLNQKVLLSPRTKFKKGD 1196 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 VL DGPST+ G+LA+GQN+ VAFMPW GYNFED+IL+SER+V++D FT+IHI+E +R Sbjct: 1197 VLVDGPSTERGDLAMGQNVLVAFMPWGGYNFEDAILISERLVRDDMFTSIHIEEFELEAR 1256 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 +TK G EEIT DIPN+ + AL LDE GIV IGAEV GDILVGKVTPK ETQLTPEE+L Sbjct: 1257 ETKQGKEEITRDIPNLSDEALKNLDEGGIVRIGAEVKPGDILVGKVTPKAETQLTPEERL 1316 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS 961 LRAIFG+K+++ KD+SL VP G+ G V+DV++ +R G+EK++ A+ M Q L+ Sbjct: 1317 LRAIFGDKSANWKDASLTVPAGIEGIVVDVKILSRKGIEKEE-AVMAAPMH-GQDIGSLT 1374 Query: 962 EELQ------------ILEAGLFSRI--RAVLVA--GGVEAEKLDKLPRDRWLELG---- 1001 Q ++A L ++ +L A G V +K +L D +L Sbjct: 1375 HAYQGELRKVEEEKKEKIKAFLLGKVIKEDILDAETGDVILKKKRRLTTDTLEKLADYSA 1434 Query: 1002 --LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 L+D+++Q++L+ + + E + + + + ++ +GD+LAPGVLK+VKVY+A+KR+ Sbjct: 1435 ITLSDQKEQDELQAIESRTKEKIEAIQMRHDERIGRLKKGDELAPGVLKLVKVYVAMKRK 1494 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 + GDKMAGRHGNKGV+S+I P+E D+ P G P + + + Sbjct: 1495 LSVGDKMAGRHGNKGVVSRIVPVE-----------DMPFLPDGTPVDIILNPL------- 1536 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 G+ ++N V ++ E LG R G Sbjct: 1537 ---GVPSRMN--------VGQILE-----THLGMAARAL--------------------G 1560 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + +ATPVFDGA E EIK +LK G + +GQ RL DG+TGE FERPVTVG MYM KL+HLV Sbjct: 1561 LHVATPVFDGATEEEIKAMLKKGGISETGQTRLVDGKTGEVFERPVTVGVMYMFKLHHLV 1620 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWAL+AYGAA TLQE LTVKSDDV+ Sbjct: 1621 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVKSDDVS 1680 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GR++MY+ IV G + ++PG+PESFNVL+KE++SL ++IEL Sbjct: 1681 GRSRMYEAIVRGENYLDPGLPESFNVLIKELQSLALDIEL 1720 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 165/238 (69%), Gaps = 15/238 (6%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD-PEG---QYGLEAAFRSVFPIQSYSGNS 66 +R +FG Q +DV L+ IQ S+++F++ D P GL++AF SVFPI+ Y+GN Sbjct: 8 VRHNFGGSQQFIDVQDLIEIQKRSYERFLQLDVPPSLREDSGLQSAFLSVFPIEDYNGNY 67 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYER-----------EAPEGTVK 115 + ++ Y LGEP ++ EC RG+TY+APL++K+R+ E+ + P +VK Sbjct: 68 RIDFIEYSLGEPKYEEYECLERGMTYAAPLKIKIRIAALEQNKEIDKTSPLSKEPSFSVK 127 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +KE+E Y+G++PLMT GTF+INGTERV+VSQLHRSPGVFF DK KT +G L+ +R Sbjct: 128 YMKEEEKYLGDLPLMTTKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRLTGTPLFTSR 187 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 IIPYRGSW+DFE+D KDNL+VRIDR++K PATI+L+A+ T+ ++ ++ +I+ Sbjct: 188 IIPYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTSADVVKEYYNIETLQIK 245 >UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Tax=Bacteria RepID=RPOB_METI4 Length = 1289 Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/1089 (49%), Positives = 711/1089 (65%), Gaps = 108/1089 (9%) Query: 292 IAGKVVAKDYIDESTGELICAANME-LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 +A KV+ + D +++ A E ++ ++ +L G I+++ D+ + + + Sbjct: 243 VATKVLVSEVKDPHNPDVVLARAYEPVTRSVVRQLLDVG---IQSISVVDVQYDDTLIKC 299 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 L+ DPT D + AL EIYR +RPG+PPT A+ L + L RYDL VGR K N+ L Sbjct: 300 LKKDPTKDPVEALKEIYRRLRPGDPPTESNAKLLLKRLLLDPKRYDLGRVGRYKLNQKLN 359 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + IL+ +D++ + LI +R G+G DDIDHLG+RR+R+VGE+ NQ R+GL R Sbjct: 360 IQVDPDIRILTWEDLVAATRYLIKLRKGEGITDDIDHLGSRRVRTVGELVANQCRMGLAR 419 Query: 471 VERAVKERLSLGDLDT--LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 ER VKER++L D++T + PQ +IN K +SA +++FF SQLSQ MDQ NPLSE+THKR Sbjct: 420 TERLVKERMTLFDVNTEGMTPQKLINPKALSATIRDFFARSQLSQLMDQINPLSELTHKR 479 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+SALGPGGL+RERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI +++ Y++ N+YG LE Sbjct: 480 RLSALGPGGLSRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSRFNDYGILE 539 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 TPYRKV +G VT+EI Y +A +E NYVIA AN+ + E+G ++ V R + E R+ Sbjct: 540 TPYRKVLNGKVTNEIVYFTADQEENYVIAMANTAVSEDGTILDQRVAVRFRREFMEVERE 599 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 +V+YMDVS +Q+VSV A LIPFLEHDDANRALMG+NMQRQAVP ++ + P+VGTG+E V Sbjct: 600 KVEYMDVSPKQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLIQPEAPIVGTGIEERV 659 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVN----EDEMYPGEAGID----IYNLTKYTRSN 760 A D V++ G V V I++ E + + G + +Y L K+ RSN Sbjct: 660 ARDIQAVIVSEVDGTVSSVTGKEIIVTPTGSPVEQKKKKSKQGSEREGIVYKLNKFMRSN 719 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 TCINQ P V G+ V++GDVLADGPST GELALG+N+ VAFMPWNGYNFED+I+VSE Sbjct: 720 AGTCINQKPIVKKGQVVKKGDVLADGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSE 779 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 RVV+ED FT+I+I E V+RDTKLGPEEIT DIPNVG+ AL L GI+ +GAEV G Sbjct: 780 RVVKEDLFTSIYIDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPG 839 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR---- 936 DILVGK+TPK ET+L PEE+LLRAIFGEKA+DVKDSSLRVP+G G V+DV+V + Sbjct: 840 DILVGKITPKSETELAPEERLLRAIFGEKAADVKDSSLRVPSGTYGIVMDVRVSSGTARV 899 Query: 937 -----DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 + E ++ EIEE + Q +++L EEL + + + L VE ++ Sbjct: 900 RKEKINASEAKQKIKEIEE-RYDQKEEELREELTQALSNILLNEKIPLDVVNVETGEI-I 957 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--------------ELKHEFEKKLEAKRR--- 1034 +P +R + L L ++A+ YD E+ FE K E R Sbjct: 958 IPANRKITKVL--------LRKMAQAYDKIEIDPSPIRSKIFEIIGNFEAKFEQLRNDRE 1009 Query: 1035 ----KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 +I G+D PG++K VKV++A KR++ GDKMAGRHGNKGV+SKI P+EDMPY + Sbjct: 1010 LELDQIESGEDTEPGIIKQVKVFIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPYLPD 1069 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD 1150 GTPVDIVLNPLGVPSRMN+GQ+LETHLG+AAK +G + + + K+REF+ +A Sbjct: 1070 GTPVDIVLNPLGVPSRMNVGQVLETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKA-- 1127 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 G D K L +DG Sbjct: 1128 -GMDEDGKSIL-------------------------YDG--------------------- 1140 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 RTGE F + V VG +YM+KLNH+V DK+HAR+ G YSLVTQQPLGGKAQ+GGQRF Sbjct: 1141 -----RTGEMFNQRVVVGMIYMMKLNHMVADKIHARAVGPYSLVTQQPLGGKAQYGGQRF 1195 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEMEVWA+EAYGAAY LQE+LTVKSDDV GRT++Y++IV G + +E PESFNVL+KE+ Sbjct: 1196 GEMEVWAMEAYGAAYILQELLTVKSDDVQGRTRIYESIVKGENYLETTTPESFNVLIKEL 1255 Query: 1331 RSLGINIEL 1339 + L + + + Sbjct: 1256 QGLCLEVNI 1264 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/196 (47%), Positives = 124/196 (63%), Gaps = 16/196 (8%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSE 67 R +FGK + L +P L+ Q S+ F++ Q GL F VFPI+SY G + Sbjct: 7 RINFGKIREGLSLPNLIEHQTKSYADFLQLSVAPQERKAEGLHGVFLEVFPIESYDGKVK 66 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+YV+Y +GE F +C G TY+APL V RL + EG +KE++VYMGE+ Sbjct: 67 LEYVNYEIGESKFSPIDCLRDGKTYAAPLYVTFRL-----KDEEG----VKEEKVYMGEL 117 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MT G+F+ING ERVIV+QLHRSPG+ F+S HS+GK LY+ RIIP RGSWL+ Sbjct: 118 PMMTPQGSFIINGAERVIVNQLHRSPGICFESS---FHSNGKTLYSFRIIPDRGSWLEVA 174 Query: 188 FDPKDNLFVRIDRRRK 203 FD D L+V +DRR+K Sbjct: 175 FDTNDLLYVYLDRRKK 190 >UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Tax=Bacteria RepID=RPOB_SULMW Length = 1328 Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/1360 (40%), Positives = 812/1360 (59%), Gaps = 147/1360 (10%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFP 58 + +T++K I +F + P L IQ+ SF F + G F FP Sbjct: 12 FPFTKEKTI--NFASVRNKISYPDFLDIQIKSFTNFFCINYTYKNISNKGFYKVFIEYFP 69 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I + ++SY++ +P++ ++EC RG+TY+ +R + + IY + T+++ + Sbjct: 70 ISDSKNKFIIDFISYKIYDPLYSIEECIKRGLTYNVYIRARFK--IYRTRKRKITIENKR 127 Query: 119 E-------QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 Q+VY G P MT +G+F+ NG+ERVIVSQLHRSPGVFF + + K+ Sbjct: 128 TKYFETIYQDVYFGTCPYMTPSGSFIFNGSERVIVSQLHRSPGVFFG--QYDIPNLPKIS 185 Query: 172 YNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIF 230 Y ARIIP +GSW++ D + +++ +D +++LP T +LRAL YT + IL++F + Sbjct: 186 Y-ARIIPLKGSWIELSTDINNVMYIYLDIKKRLPITTLLRALGYTRDIDILNIF--NLAE 242 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 E+ NK+ + + G T + RI ++ E++D+ L+E ++ Sbjct: 243 EVNINKVNYK----KFLGRTLA--------------ARIFKTSYQKFEENDI-LLERNIK 283 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + K +ID ++ + L K ++ K + + I T Sbjct: 284 ------LKKYHID-------IILYYKIKVISLYKKNEKNEKNL---------YYSIIHNT 321 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 L+ DPTN + A + IY+ ++ P + A+ FF E L VGR K N++L Sbjct: 322 LKKDPTNSQKEANIYIYKELKDSFPKNDKKAKLFINKFFFDETH--LGEVGRYKLNKTLK 379 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + IL+ +DII +++ LI + N K EVDDID+L NRR+++VGE Q+ +G+ R Sbjct: 380 LDFPLKDQILNIEDIISIIENLIALCNNKKEVDDIDNLANRRVKTVGEQLYTQYTIGIAR 439 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 V R +KER+++ D +TL P ++IN+K +++ + FFG+ +LSQFMDQ NPL+E+THKRRI Sbjct: 440 VSRIIKERINVKDNETLTPLELINSKTLTSVINSFFGTDELSQFMDQTNPLAEMTHKRRI 499 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 S+LGPGGL+RERAGFE+RDV+ +HYGR+CPIETPEGPNIGLI+SL V+A+ N GF+ETP Sbjct: 500 SSLGPGGLSRERAGFEIRDVNYSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFIETP 559 Query: 591 YRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 Y KV G V+ + Y+S+ +E +I QAN+ L+ + +++ + R + + + Sbjct: 560 YFKVKKGKVVINEAPIYISSDQEYGKLITQANAILNYKTGVLKNNIIVRVNADFPMVNYK 619 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 +++Y+DVST Q+ S+ ASLIPFLEHDDANRALMG+NM RQ+VP L P+VGTG+E+ + Sbjct: 620 KINYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGLEKHL 679 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE---MYPGEAGIDIYNLTKYTRSNQNTCI 765 A A+ G+V+ VDA+ I +K E + E I Y L K+ ++NQNTC+ Sbjct: 680 AQYVNALIYAEGDGIVESVDANNIKVKYFNSEKEKLLSFEKRIKTYKLIKFRKTNQNTCL 739 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 N P V G V +G VL +G +T G+LALG+N++VAFMP+ GYNFED+I++SE+VV+E Sbjct: 740 NIRPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDAIVISEKVVRE 799 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 D FT+IHI E + RDTKLG EE T DIPN E KLD+ GI+ IG+EV GD+L+G Sbjct: 800 DWFTSIHIDEYSLEVRDTKLGMEEFTFDIPNFNEENKKKLDKYGIIKIGSEVKPGDVLIG 859 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD-KR 944 ++TPK E + EE L+AIFG+K +K++SL+ + + G VID +++++ ++D ++ Sbjct: 860 RITPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKADSSLFGVVIDTKIYSKFSSKEDEQK 919 Query: 945 ALEIEEMQLK------------QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL--- 989 +I+++ K K L E + E L S + ++ G + + Sbjct: 920 QFQIKKLNNKFMKNLKLLRKLLINKLILVLEGSVSEGILNSSYKEIIPKGKILNKLNLKK 979 Query: 990 ----DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 ++ W+ ++ K N + ++ + Y +E + KL+ K+ ++ GD++ G Sbjct: 980 LLKNQEIIYQNWV----NNKYKNNLVFKIIKFYYLKINELKIKLKRKKNRLLIGDEITSG 1035 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 ++KI KV +A KR+++ GDKM+GRHGNKG++++I EDMPY E+GT VD+VLNPLGVPS Sbjct: 1036 IIKIAKVLIAKKRKLKVGDKMSGRHGNKGIVARIVKEEDMPYLEDGTSVDLVLNPLGVPS 1095 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RMN+GQI ET LG A G+K+ Sbjct: 1096 RMNLGQIYETILGWA----GEKL------------------------------------- 1114 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 G+ +TP+FDGA EI + + +LP+ G L+DG TGE+F++PV Sbjct: 1115 -------------GINFSTPIFDGASIEEISKYTDIANLPSFGNTYLFDGETGEKFDQPV 1161 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 TVG +YMLKLNH+VDDKMHARS G YSL+TQQPLGGK++FGGQR GEMEVWALEA+GAA Sbjct: 1162 TVGVIYMLKLNHMVDDKMHARSIGPYSLITQQPLGGKSKFGGQRLGEMEVWALEAFGAAN 1221 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 L+E+LTVKSDDV GRTK Y+ IV PG+PESF+V Sbjct: 1222 ILREILTVKSDDVKGRTKTYEAIVKRETIPNPGIPESFHV 1261 >UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA polymerase beta subunit n=1 Tax=Hydra magnipapillata RepID=UPI00019270C2 Length = 1140 Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/600 (71%), Positives = 500/600 (83%) Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 LD G YIS+TLR D T D +A V IYRMMRPGEPPT +A ++LF+ LF++ D YDLS V Sbjct: 233 LDQGAYISQTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRV 292 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 GRMKFN + R E G +L+ +DI+ V+K L+D+RNG+G+VDDIDHLGNRR+R VGE+A Sbjct: 293 GRMKFNAKMGRSESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELA 352 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 ENQ+R GL R+E+AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFM+Q NP Sbjct: 353 ENQYRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMNQTNP 412 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L+EITHKRR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL++YA+ Sbjct: 413 LAEITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYAR 472 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 NEYGF+ETPYR+V D VT+EI YLSAIEEG YVIAQAN+ LD+EG DLV+ R KG Sbjct: 473 LNEYGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKEGTLTGDLVSAREKG 532 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 ES L S D+V YMDVS Q+VSV ASL+PFLEHDDANRALMGANM RQAVP LR +KP+V Sbjct: 533 ESILVSADRVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMV 592 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 GTG+ER AVDSG A RGG+V YVDA+R+VI+VN+ E GE G+DIYNL KY RSN Sbjct: 593 GTGIERVAAVDSGTVVTATRGGIVDYVDATRVVIRVNDAEAQAGEVGVDIYNLIKYQRSN 652 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 QNT I+Q P V G+ + +GDV+ADG STDLGE+A+GQNM VAFMPWNGYNFEDSIL+SE Sbjct: 653 QNTNIHQRPIVKKGDKLSKGDVIADGASTDLGEIAIGQNMLVAFMPWNGYNFEDSILISE 712 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 RVV EDR+T+IHI+EL ++RDTKLG EEIT DIPN+ E L++LDESGI+Y+GAEV G Sbjct: 713 RVVAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPG 772 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 D LVGKVTPKGET LTPEEKLLRAIFGEKASDVKD+SLRV G SGTVIDVQVFTR+G E Sbjct: 773 DTLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGDE 832 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/313 (66%), Positives = 250/313 (79%), Gaps = 13/313 (4%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 +GD+L GVLK+VKVY+AVKRR+QPGDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIV Sbjct: 829 EGDELPAGVLKMVKVYIAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPYLADGTPVDIV 888 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNPLGVPSRMNIGQ+LE HLG A KG+G +I ML+++ ++R F+++ Y+ + Sbjct: 889 LNPLGVPSRMNIGQVLEVHLGWAGKGLGQRIGDMLQREAASTEIRGFLEQVYN---STGR 945 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL----------GDLPTS 1207 K DL+ SD EV +A+ L G+P A+PVFDGA E EI ++L+L G T Sbjct: 946 KEDLAQLSDAEVQEMAKELTSGVPFASPVFDGATEKEIGDMLQLAYPDDVAKAKGLTATR 1005 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 Q +LYDGR+G+ FER TVGYM+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGG Sbjct: 1006 TQAQLYDGRSGDAFERTTTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGG 1065 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QRFGEMEVWALEAYGA+Y LQEMLTVKSDDV GRTK+Y+NIV G H +E GMPESFNVL+ Sbjct: 1066 QRFGEMEVWALEAYGASYVLQEMLTVKSDDVQGRTKVYENIVKGEHSIEAGMPESFNVLV 1125 Query: 1328 KEIRSLGINIELE 1340 KEIRSLGI+IEL+ Sbjct: 1126 KEIRSLGIDIELD 1138 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 141/232 (60%), Positives = 186/232 (80%), Gaps = 7/232 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD--PEGQY--GLEAAFRSV 56 M Y+YTE+KRIRK+FG R VL++PYLL +Q D++ F++ D P+ + GL+AAF + Sbjct: 1 MAYTYTERKRIRKNFGSRDSVLEIPYLLQMQKDAYTAFLQADVGPKKRTNEGLQAAFEAA 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG---T 113 FPI S++G E++Y+ Y L +P FDV+ECQ RG+TY++ +R K++L+IY+RE+ G Sbjct: 61 FPIVSHNGFVEMKYLEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTGQNKV 120 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 VK++KEQEVYMGE+PLMT G+F+INGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ Sbjct: 121 VKEVKEQEVYMGEVPLMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF 225 ARIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ E IL FF Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFF 232 >UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 Tax=Bacteria RepID=RPOB_CLOTH Length = 1250 Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/975 (48%), Positives = 636/975 (65%), Gaps = 103/975 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ + +R + K +V+D+P L+ IQ +S+++F+++ G + F+ V PI Sbjct: 1 MVHPVKLGRNVRMSYSKIDEVIDMPNLIEIQKNSYEQFLKE------GFKEVFKDVNPIT 54 Query: 61 SYSGNSELQYVSYRLGEPV-FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 Y+GN L++V Y L EP + V EC+ R TY+APL+VK+RL+ E ++KE Sbjct: 55 DYTGNLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLINKE-------TGEVKE 107 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 QE++MG+ PLMT+ GTF+ING ERVIVSQL RSPG+++ K +GK L++ +IP Sbjct: 108 QEIFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYAM---KIDKAGKQLFSNTVIPN 164 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFE--KVIFEIRDNK 236 RG+WL++E D D L VRIDR RKLP T+++RAL Y T+ +I +LF E +++ I+ + Sbjct: 165 RGAWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDS 224 Query: 237 LQMEL-----VPERLR-GETAS-----------------FDIEANGKVYVEKGRRITARH 273 + E + +RLR GE + +D+ G+ K I AR Sbjct: 225 TKTEEEGLLEIYKRLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSIAAR- 283 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 I G + ++ D TGE+I A +S + + +G + Sbjct: 284 ------------------IHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV 325 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRL--SALVEIYRMMR--PGEPPTREAA--ESLFEN 387 LRVD N ++ + +V+I R + P E E + L E Sbjct: 326 ----------------ILRVDGKNVKVIGNDMVDIKRYVDFDPKEIGINEKVKRDVLMEI 369 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEG--SGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 L + + D + + L+E I+ ++K+DII + +I + G G DDI Sbjct: 370 LEEYKGKGDDAI-------KKALQERIDDLIPKHITKEDIISSISYIIGLSYGIGSTDDI 422 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 DHLGNRR+RSVGE+ +NQFR+GL R+ER V+ER+++ DLD + PQ +IN +P++AA+KEF Sbjct: 423 DHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEF 482 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 FGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPE Sbjct: 483 FGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPE 542 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTD---GVVTDEIHYLSAIEEGNYVIAQANSN 622 GPNIGLI SLS YA+ NEYGF+ETPYRKV+ G VT+EI YL+A EE Y+IAQAN Sbjct: 543 GPNIGLIGSLSTYARVNEYGFIETPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEP 602 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 LDEEG F+ + V CR K E ++D+MDVS +Q+VSV S+IPFLE+DDANRALMG Sbjct: 603 LDEEGRFISNKVVCRYKEEFIEVDPSKIDFMDVSPKQIVSVATSMIPFLENDDANRALMG 662 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 ANMQRQAVP ++ + P+VGTG+E A DSGV +AK GVV+ V A+ I+I+ + + Sbjct: 663 ANMQRQAVPLIKTESPIVGTGIEYRAARDSGVVILAKNPGVVEKVTANEIIIRTKDGKR- 721 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 D Y L KY RSNQ TCINQ P V GE VE GDV+ADGPSTD GE+ALG+N+ V Sbjct: 722 ------DTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLV 775 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 FM W GYN+ED+IL+SER+V++D FT+IHI+E +RDTKLGPE+IT +IPNV E AL Sbjct: 776 GFMTWEGYNYEDAILISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDAL 835 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 L+ GI+ IGAEV GDILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+ Sbjct: 836 KDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPH 895 Query: 923 GVSGTVIDVQVFTRD 937 G SG V+DV++FTR+ Sbjct: 896 GESGIVVDVKIFTRE 910 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 174/305 (57%), Positives = 205/305 (67%), Gaps = 54/305 (17%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+LAPGV K+V+VY+A KR+I GDKMAGRHGNKGVIS+I P+EDMP+ +GTP+DIV Sbjct: 911 NGDELAPGVNKLVRVYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLDIV 970 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNPLGVPSRMNIGQ+LE HLG AAK +G K+ + Sbjct: 971 LNPLGVPSRMNIGQVLEVHLGYAAKALGWKVATPV------------------------- 1005 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 D +T D + + LRK L G+ LYDGRT Sbjct: 1006 -FDGATEED-----IVQTLRK-----------------------AGLAEDGKSILYDGRT 1036 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 GE FE VTVGYMYMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWA Sbjct: 1037 GEPFENRVTVGYMYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1096 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 LEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PE F VL+KE++SL +++ Sbjct: 1097 LEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGIPECFKVLIKELQSLCLDV 1156 Query: 1338 ELEDE 1342 ++ E Sbjct: 1157 KVYSE 1161 >UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax=Borrelia RepID=RPOB_BORHD Length = 1155 Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/941 (47%), Positives = 621/941 (65%), Gaps = 65/941 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD------PEGQYGLEAAFRSVFPIQSY 62 KR+ GK ++LD+P L+ IQL+S++KF++ + P GLE+ FR VFP++S Sbjct: 3 KRVHLGQGKAEEILDLPNLIEIQLNSYEKFLQLERLKTNRPLLNEGLESVFRDVFPMKSS 62 Query: 63 SGNSELQYVSYRL--GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G L+Y Y + F +EC+ +G +Y A L+++L L T +I+++ Sbjct: 63 NGEVALEYEKYYIEYNSLSFTEKECKRKGQSYEAVLKIRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMTD GTF++NG ERVIVSQ+HRSPGV F +K LY ARIIPYR Sbjct: 116 DVYMGTIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKD--------LYYARIIPYR 167 Query: 181 GSWLDFEFDPK-DNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D K D L+V+IDR++++ T+ LRAL T E+I++ F++ E+ ++ Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVNED--- 224 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + G+ + +I + G +IT + I ++ VK I++ +++ V Sbjct: 225 ---TKREITGQYLATNIIIKENMTYRAGDKITLQDIEDFLQNGVKEIDL-IDFDGYDSVP 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + S L C + L + G K + Sbjct: 281 GKHFISSDVILNCFEKEDAYFSL-----KDGFKELS------------------------ 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R S ++ +Y ++ PGEP + + AES N+FFSE RYDL VGR K ++ +++ S Sbjct: 312 RESVMLAVYSVLLPGEPISIDNAESDLRNVFFSEKRYDLGHVGRYKLSKKFGLDDLTTS- 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DI++ + L+ I +G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ YA+ N+YGFLETPYRKV DG Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLETPYRKVVDGK 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VTDEI YLSAI+E IAQAN+ ++ EG++++DL++ R G+ + +DYMDVS + Sbjct: 551 VTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVSGDYTTMIPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGMER VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERIVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G+V + +IVI+ E + +D Y L KY R+NQ+T N V G+ V Sbjct: 671 KRSGIVVLATSKKIVIR---PEDAADDHDLDEYELAKYERTNQDTSFNHSVLVKEGQVVN 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +G+++ADGP+T GE+ALG N+ V F+PWNG+N+ED+IL+SER+++ED +T+IHI+E + Sbjct: 728 KGEIIADGPATRYGEVALGNNLLVGFIPWNGFNYEDAILISERIIKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++TADIPNV L+KLDE+GIV IG V GDIL+GKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTADIPNVSGKILNKLDENGIVRIGTYVKPGDILIGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 KLL +IFGEKA DVK++SL+VP+G GTVIDVQ T+D V Sbjct: 848 FKLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDV 888 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 164/311 (52%), Positives = 207/311 (66%), Gaps = 56/311 (18%) Query: 1034 RKITQGD--DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 ++IT+ D +L PGV +I+KVY+A KR+++ GDKMAGRHGNKGV++KI P+EDMPY +G Sbjct: 881 QRITKDDVSNLPPGVDEILKVYIAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADG 940 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 TP+DI LNPLGVPSRMNIGQ++E+ LG+A K +G+ YD+ Sbjct: 941 TPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGE---------------------YYDV 979 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 PVF+ A I+E LK + + Sbjct: 980 ---------------------------------PVFESATNECIQEKLKKAGFNETSKAV 1006 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 LYDG TGE FE V VG +YMLKL+HLVDDKMHARSTG YSLV+QQPLGGKAQFGGQR G Sbjct: 1007 LYDGYTGEPFENEVMVGIIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRLG 1066 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWALEAYGAA+TLQE+LTVKSDD++GR K+Y+NIV G G+PESFNVL++E+R Sbjct: 1067 EMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIYENIVKGIPTNVSGIPESFNVLMQELR 1126 Query: 1332 SLGINIELEDE 1342 LG ++ + D+ Sbjct: 1127 GLGFDLSIYDD 1137 >UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=D1B5Y3_THEAS Length = 1201 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/937 (47%), Positives = 613/937 (65%), Gaps = 83/937 (8%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSE 67 R+ GK+ ++++P L+ +Q S++ F + D + + GL+ F+ VFPI+SY GN Sbjct: 12 RRYLGKQKDLIELPDLVEVQRHSYEWFFQADEDPNFRRLQGLQELFKEVFPIESYDGNFA 71 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L++V Y + P ++E + R +T+S P+R +RLV + +IKE+EVY+G+ Sbjct: 72 LEFVRYYVDPPTISIEEARERDLTWSRPIRATIRLV-------NRSNGEIKEEEVYLGDF 124 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+INGTERV+VSQL RS GV+F +D S G+ Y A++IP RG+WL+F+ Sbjct: 125 PVMTDRGTFIINGTERVVVSQLARSAGVYFSAD---LSSPGQETYAAKLIPDRGAWLEFD 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPERL 246 P + L V+ID R+K+P T+ L+AL T +++L LF V + ++ Sbjct: 182 LTPSEFLSVKIDNRKKIPVTMFLKALGVPTDDELLRLFGATVEEVDVVEEDVRGML---- 237 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 A + ++G+V K RIT H+ +L K Sbjct: 238 ---LAEPIVGSDGRVIFHKNDRITKEHLDELWK--------------------------- 267 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 G R+ +DH ++ETL DPT+ A++EI Sbjct: 268 ---------------------QGRTRVAVW---RVDHS--VAETLEKDPTSSTDEAMLEI 301 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 +R ++P EPP E A +LFF RY+L VGR K NR L + + +L+ +D++ Sbjct: 302 FRRLKPNEPPRMENAREHMHSLFFDSRRYNLGRVGRYKLNRRLGLQVDDEQRLLTVEDVV 361 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-SLGDLD 485 ++ L+ +R+G DDIDHLGNRR+R++GE+ +NQ R+GL+R+ER KER+ ++ DL Sbjct: 362 AIVNGLLKLRDGLEREDDIDHLGNRRVRAIGELLQNQVRIGLLRMERIAKERMTTIPDLS 421 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + +D+IN +PISAA++EFFGS QLSQFMDQ NPL+E+TH+RR+SALGPGGL+RERAGF Sbjct: 422 SATAKDLINVRPISAALREFFGSGQLSQFMDQTNPLAELTHRRRLSALGPGGLSRERAGF 481 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 E RDVH THYGR+CPIETPEG NIGL+ SL+ YA+ NEYGFL TP R+V DG VT E+ Y Sbjct: 482 EARDVHYTHYGRICPIETPEGSNIGLVTSLATYAKINEYGFLVTPRRRVVDGRVTGEVVY 541 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 LSA +E Y + A++ + E+G + D V R +G+ + +DQVD++DVS +Q+VSV Sbjct: 542 LSADDEDEYNVGMASTPVGEDGSILIDEVHVRHRGDIRMVPKDQVDFLDVSPKQIVSVST 601 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 LIPFLEHDDANRALMG+NMQRQAVP +RA+ PLVGTG+E +A DSG +A+R G V+ Sbjct: 602 GLIPFLEHDDANRALMGSNMQRQAVPLVRAEAPLVGTGIEAKIARDSGSCILARRSGTVE 661 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 +VDA R+VI+ + ++ Y L K+ RSNQ T I+Q P V G+PV+ GDV+AD Sbjct: 662 FVDADRVVIRAE-------DGTLNQYRLVKFRRSNQGTVIHQRPLVRKGDPVKAGDVIAD 714 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 G + GELALG+N+ VAF+ W GYNFED+IL+S+RVV+ED +T+IHI+E +RDTKL Sbjct: 715 GQACQGGELALGRNVLVAFVSWEGYNFEDAILLSQRVVKEDYYTSIHIEEYEVEARDTKL 774 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 GPEEIT DIPNVG+ AL LDE+GIV IGAEV GDILVGKVTPKGE+ +PEE+LLRAI Sbjct: 775 GPEEITRDIPNVGDDALKNLDENGIVRIGAEVRAGDILVGKVTPKGESDQSPEERLLRAI 834 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 FGEKA +V+DSSLRVP+G G V+ ++ +R+ +D Sbjct: 835 FGEKAREVRDSSLRVPHGEGGKVVAIKRLSREHNSED 871 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 159/300 (53%), Positives = 200/300 (66%), Gaps = 48/300 (16%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +DL+PGV ++VKVY+A R+I GDKMAGRHGNKGV+SKI P EDMP+ +GTPVD+VLN Sbjct: 870 EDLSPGVNEVVKVYVAQFRKITEGDKMAGRHGNKGVVSKILPEEDMPFLSDGTPVDVVLN 929 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMN+GQ+ ET +G A G K+ + + GAD Sbjct: 930 PLGVPSRMNLGQVFETVMGFVAMHNGWKVATPVFE-----------------GAD----- 967 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 EE+ +L + +R+ K +L +I LYDGRTGE Sbjct: 968 ------QEEIFQLVDKIREN--------------------KYPELTRDCKITLYDGRTGE 1001 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 ++ VTVG MYMLKL HLVDDK+HARSTG YSL+TQQPLGGK QFGGQRFGEMEVWALE Sbjct: 1002 PMDKKVTVGVMYMLKLIHLVDDKIHARSTGPYSLITQQPLGGKTQFGGQRFGEMEVWALE 1061 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAA+ LQE+LTVKSDD+ GR K Y+ IV G + +PG+PESF VL+KE++ LG+++E+ Sbjct: 1062 GYGAAHMLQEILTVKSDDIRGRLKTYERIVKGQNLAKPGVPESFRVLIKELQGLGVDVEI 1121 >UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Tax=Bacteria RepID=RPOB_CLOBB Length = 1249 Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/957 (48%), Positives = 630/957 (65%), Gaps = 68/957 (7%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ KR R FGK V ++P L+ +QLDS+Q F+ + GL F + PI Sbjct: 1 MVHPVQVGKRTRMSFGKVKDVTEMPNLIEVQLDSYQWFLRE------GLHEVFEDINPIT 54 Query: 61 SYSGNSELQYVSYRLG--EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +++GN L++V Y+L + V+EC+ R TY+APL+V +RL E +IK Sbjct: 55 NFTGNLVLEFVDYKLDMDNIKYSVEECKERDATYAAPLKVSVRLQNNE-------TGEIK 107 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 EQEV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+++ KT GK LY+A +IP Sbjct: 108 EQEVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDKT---GKKLYSATVIP 164 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEI---RD 234 RG+WL++E D D ++VRID+ RKLP TI+ RA+ + ++Q +LD F E F +D Sbjct: 165 NRGAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKD 224 Query: 235 NKLQMEL----VPERLR-GETASFD--IEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 N E + +RLR GE + D I ++ + R +R R + L Sbjct: 225 NTKTREEGLLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLAL--- 281 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL-----D 342 IA ++ A D I+ STGE++ ++S L + +G K ++ L + L + Sbjct: 282 -NLRIANQIAAMDVINPSTGEIMVEKGQKISRLLAEDIQNAGIKSVDILVDDKLVRVISN 340 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 + I++ + D ++ ++ LV P RE ++ + E+ Sbjct: 341 NFVDITKQVPFDVSDLQIKELVHY--------PTLREILDNYSDETTIKEE--------- 383 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 +K N S L + + KDDI + + + G G VDDIDHLGNRR+RSVGE+ +N Sbjct: 384 IKKNLSRLIPKH-----IIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQN 438 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 QFR+GL R+ER VKER+++ D +++ PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPLS Sbjct: 439 QFRIGLSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLS 498 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSL+ +A+ N Sbjct: 499 ELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFARVN 558 Query: 583 EYGFLETPYRKVT--DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 EYGF+ETPYR V + T+EI Y +A EE +IAQA LDE G+FV+ VT R Sbjct: 559 EYGFIETPYRIVDKENARATEEIRYFTADEEDQCLIAQAKEPLDENGYFVDKKVTVRYLE 618 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + VD MDVS +Q+VSV ++IPFLE+DDA+RALMG+NMQRQAVP L+ P+V Sbjct: 619 DVLVVPATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIV 678 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 GTG+E AVDSGV A+ GVV +V A+ I +K + D G D Y L K+ RSN Sbjct: 679 GTGIEFKAAVDSGVLPKARNAGVVTFVSANEIRVKRDSD------GGTDNYRLLKFKRSN 732 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q++CINQ P V+ GE V + VLADGPSTDLGE+ALG+N+R+ F+ W GYN+ED++L+SE Sbjct: 733 QSSCINQRPIVNKGEIVFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISE 792 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +V+ED FT++HI+E C +RDTKLGPEEIT DIPNV E AL +D+ GI+ IGAEV G Sbjct: 793 ELVREDVFTSMHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSG 852 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 DILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++D++VFTR+ Sbjct: 853 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTRE 909 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 154/306 (50%), Positives = 192/306 (62%), Gaps = 56/306 (18%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+L PGV ++V+ Y+ KR+I GDKMAGRHGNKGVIS+I P EDMP+ +G P+ Sbjct: 910 NGDELNPGVNELVRCYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGRPL--- 966 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAK-GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 QI LG+ ++ IG + L +KL Sbjct: 967 -------------QICLNPLGVPSRMNIGQVLEVHLGWA--ASKL--------------- 996 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 G I+TPVFDGA E EI+E L+ +G+ LYDGR Sbjct: 997 ----------------------GWHISTPVFDGATENEIEECLEKAGYNANGKTVLYDGR 1034 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TGE F+ VTVG MY+LKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVW Sbjct: 1035 TGEPFDNLVTVGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1094 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 ALEAYGAA+TLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VL+KE+++L ++ Sbjct: 1095 ALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLD 1154 Query: 1337 IELEDE 1342 +++ +E Sbjct: 1155 VKVLNE 1160 >UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira RepID=C0QWX6_BRAHW Length = 1173 Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/959 (47%), Positives = 621/959 (64%), Gaps = 71/959 (7%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD-PEGQY---GLEAAFRSVFPIQSYSGNSE 67 R +F + V++ P LL+IQ +S++ F+++D PE + GL+ S+FPI + + + Sbjct: 29 RVNFSRTASVIEPPDLLAIQKESYESFLQKDVPENKRKNEGLQEVLTSIFPIVASNEKMQ 88 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 ++++SY +GEP +E + R TY+ P ++K++L + + E I EQE+++G+I Sbjct: 89 IEFISYSIGEPKITEKEARRRDKTYAYPFKIKVQLTVRDPER-------IIEQEIFVGDI 141 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQ+HRSPGV F+ S ++ A+IIP RG+WL+FE Sbjct: 142 PAMTDRGTFIVNGAERVIVSQIHRSPGVVFN------RSDRDAMFVAKIIPDRGTWLEFE 195 Query: 188 FDPK-DNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPER 245 D K D ++VRIDR++KLP T+ LRA+ TT E+IL LF+E + I KL E E Sbjct: 196 LDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFYE--VDNISLEKLSDENSKEA 253 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L G + + Y E+ Sbjct: 254 LIGRRSYSTV---------------------------------------------YDTEN 268 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 E+I ++ +L +L SG K I L + I TL D T ++ A + Sbjct: 269 PDEIILNPGELINPNLAERLLMSGIKEISVLNMEAIKDNVTIINTLDKDTTKNQEEACTK 328 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 IY ++RPGEP E +L F Y L VGR K N+ L E E +L DI Sbjct: 329 IYNVIRPGEPALIENVVRTCNDLVFDPKSYALGDVGRYKLNKRLNFPESEQDKVLRHKDI 388 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 I+ ++ LI + + ++DDIDHLGNRR+RSVGE+ Q + G R+ER KER+ + D++ Sbjct: 389 IETIRFLIKVFINEEQLDDIDHLGNRRVRSVGELLSIQIKAGFTRMERIAKERMQMQDME 448 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + PQ +++ K I A +KEFFG++QLSQFMDQNNPLSEITHKRR++ALG GGLTR+RAGF Sbjct: 449 AVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQNNPLSEITHKRRLNALGQGGLTRDRAGF 508 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 EVRDVH THYG++CPIETPEGPNIGLI SL+ YA+ N++GFLETPYRKV DG VTDEI Y Sbjct: 509 EVRDVHHTHYGKICPIETPEGPNIGLIVSLATYAKINKHGFLETPYRKVVDGKVTDEIEY 568 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 L+A +E Y IA AN+ L+E+G F ++L++ R + E S DQV YMDVS QQ+VS+ + Sbjct: 569 LTAHDEEKYHIADANAPLNEDGTFKDNLISTRFRSEFPYSSPDQVQYMDVSPQQIVSLSS 628 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA-VDSGVTAVAKRGGVV 724 SLIPFLEHDDANRALMG+NMQRQ+VP L + P+VGTG+E + +G+ AKR G V Sbjct: 629 SLIPFLEHDDANRALMGSNMQRQSVPLLYPEAPIVGTGVEAKICQPGTGIAVHAKRAGKV 688 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 V + IVIK + + +D+Y L KY R+NQ+T +Q P V++G+ V+ G +LA Sbjct: 689 IKVVHNEIVIKPTKQN---SDDDLDVYELVKYQRTNQDTNYHQRPVVNVGDVVKAGGLLA 745 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 DGP+TD GELALG+N+ AFM + GYNFED+IL+S R+VQED FT+IHI+E + +R+TK Sbjct: 746 DGPATDHGELALGRNVLAAFMIFEGYNFEDAILLSRRLVQEDVFTSIHIEEFSVEARETK 805 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 L E IT DIPNV +AA LDE GIV IGA+V GDILVGKVTPKGET++TPE +LL + Sbjct: 806 LDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKAGDILVGKVTPKGETEITPEYRLLHS 865 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 IFGEKA DVKD+SLRVP+G GTVIDV+V++R+ ++ K +E E +++ AKK + +E Sbjct: 866 IFGEKARDVKDTSLRVPHGKDGTVIDVRVYSRENGDELKPGVE-EVVKVFLAKKRIIQE 923 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 161/305 (52%), Positives = 197/305 (64%), Gaps = 56/305 (18%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV ++VKV+LA KR IQ GDKMAGRHGNKGV+++I PIEDMP+ E+GTPVDI L Sbjct: 900 GDELKPGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLEDGTPVDICL 959 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE-FIQRAYDLGADVRQ 1157 NPLGVPSRMNIGQ++E LG + +G K + + + LRE F+ + VR Sbjct: 960 NPLGVPSRMNIGQVIEMLLGWSGHKMGLKYACPVFEGPKEEALREAFVASGMNPNGKVR- 1018 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 ++DG RT Sbjct: 1019 ----------------------------LYDG--------------------------RT 1024 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 GE F+ V VGYMYMLKLNHLV+DK+HARSTG YSLVTQQPLGGK+QFGGQR GEMEVWA Sbjct: 1025 GEPFKNDVAVGYMYMLKLNHLVEDKVHARSTGPYSLVTQQPLGGKSQFGGQRLGEMEVWA 1084 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 LEAYGAA LQE LTVKSDD+ GR ++Y++IV G+ PG+PESFNVL++E+R LG+NI Sbjct: 1085 LEAYGAANMLQEFLTVKSDDMTGRARIYESIVKGDVISSPGIPESFNVLVQELRGLGLNI 1144 Query: 1338 ELEDE 1342 + DE Sbjct: 1145 TIHDE 1149 >UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Tax=Spirochaetaceae RepID=RPOB_BORAP Length = 1155 Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/941 (47%), Positives = 626/941 (66%), Gaps = 65/941 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD------PEGQYGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ D P GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKNKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L T +I+++ Sbjct: 63 NGDVALEYERYYIENDTLNFTEKECKRKGQSYEAVLKVRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMT+ GTF+ING ERVIVSQ+HRSPGV F +K LY+ARIIPYR Sbjct: 116 DVYMGTIPLMTERGTFIINGAERVIVSQIHRSPGVVFYKEKD--------LYSARIIPYR 167 Query: 181 GSWLDFEFDPK-DNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D K D L+V+IDR++++ T+ LRAL + T E+I++ F+ I+ K++ Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILITLFLRALGFDTREKIIETFYN-----IKKIKVE 222 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 E L G+ + I +Y G +IT + + ++ V IE+ V++ V+ Sbjct: 223 -EGTKRDLPGQYLAKSINIRENMYYRAGDKITLQDVEDFLQNGVNEIEL-VDFDGYNDVS 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 Y S L C + L + G K + Sbjct: 281 GKYFVSSNVILNCLEKEDAFFAL-----KDGSKELP------------------------ 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + S ++ +Y + PGEP + + AE+ + +FFSE RYDL VGR K ++ +++ S Sbjct: 312 KESVMLAVYGALFPGEPISIDNAENDLKTIFFSERRYDLGRVGRYKLSKKFGSDDLSTS- 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DDI++ + L+ I G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ Y++ N+YGFLETPYRKV +G Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLETPYRKVVNGE 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT+E+ YLSAI+E IAQAN+ + +G ++EDLV+ R G+ + + +DYMDVS + Sbjct: 551 VTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGME VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGTGMESVVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G V +++IV+K E E +D Y++ KY R+NQ+TC NQ V G+ VE Sbjct: 671 KRSGEVILATSNKIVVKPFESE---NVKDLDEYHIVKYERTNQDTCFNQSVLVKEGQKVE 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 RG+++ADGP+T GELALG N+ + +PWNG+N+ED+IL+S+R+V+ED +T+IHI+E + Sbjct: 728 RGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++T DIPNV E L+KLDE+GI+ IG V GDILVGKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 +LL +IFGEKA DVK++SL+VP+G GTVIDVQ T++ V Sbjct: 848 FRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDV 888 Score = 315 bits (807), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 167/312 (53%), Positives = 214/312 (68%), Gaps = 58/312 (18%) Query: 1034 RKITQGD--DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 ++IT+ D +L+PGV +I+KVY+A KR+++ GDKMAGRHGNKGV++KI P+EDMPY +G Sbjct: 881 QRITKEDVGNLSPGVEEILKVYVAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADG 940 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 TP+DI LNPLGVPSRMNIGQ++E+ LG+A K ++ +Y++ Sbjct: 941 TPLDICLNPLGVPSRMNIGQLMESQLGLAGK---------------------YLSESYNV 979 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK-LGDLPTSGQI 1210 PVF+ A +I+E LK G PTS +I Sbjct: 980 ---------------------------------PVFESATNEQIQEKLKKAGFNPTSKEI 1006 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 LYDG TGE FE V VG +YMLKL+HLVDDKMHARSTG YSLV+QQPLGGKAQFGGQR Sbjct: 1007 -LYDGYTGEPFENEVMVGVIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRL 1065 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEMEVWALEAYGAA+TLQE+LTVKSDD++GR K+Y+NIV G G+PESFNVL++E+ Sbjct: 1066 GEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIYENIVKGVPTNVSGIPESFNVLMQEL 1125 Query: 1331 RSLGINIELEDE 1342 R LG+++ + D+ Sbjct: 1126 RGLGLDLSIYDD 1137 >UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella RepID=D1BP72_VEIPT Length = 1386 Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/966 (47%), Positives = 609/966 (63%), Gaps = 118/966 (12%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 KR R + K +V+ +P+LL IQ S++ F+E GL+ F + PI+ SGN L Sbjct: 9 KRTRYTYAKINEVIKMPHLLDIQRKSYEWFLES------GLQNIFNDISPIKDNSGNLVL 62 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 + + LGEP +D+ EC+ R TY+APLRV +RLV PE DIKEQEV+MG+ P Sbjct: 63 SFEGFSLGEPKYDINECKNRDATYAAPLRVNIRLV---NNDPENM--DIKEQEVFMGDFP 117 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 LMTD GTF+ING ERVIVSQL RSPGV+++ + + G LY++ +IP RG+W++ E Sbjct: 118 LMTDTGTFIINGAERVIVSQLVRSPGVYYNKE---IDTMGNRLYDSTVIPNRGAWIELET 174 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFF-------------EKVIFEIRD 234 D + + VRIDR RKLPAT+++RAL + T E ILDLF+ E+++ + Sbjct: 175 DASEVVAVRIDRNRKLPATVLVRALGWDTNESILDLFWNGKTDEDGLPVYDERIVRTLEK 234 Query: 235 NKLQ------MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIE 286 + Q +E+ + GE + + N ++ + R AR R K + KL Sbjct: 235 DTTQSADEALVEIYKKLRPGEPPTVESARNLFDNLFFDARRYDLARVGRY--KLNKKLGW 292 Query: 287 VPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 + + G+ +A+ +D TGE+I A + Q G ++++ + + + G Sbjct: 293 --RQRMLGQTLAQPIVDPETGEIILDAGV-----------QVGEEQLDIVANSHVFDGEG 339 Query: 347 ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR--MK 404 +E V+ ND + + V P YD V R M Sbjct: 340 FAEFYIVN--NDGVESKVICNNCNLP----------------------YDHRTVTREDMI 375 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N S L ++G+G DDIDHLGNRR+R VGE+ +NQF Sbjct: 376 ANISYLLNLMDGAG----------------------HTDDIDHLGNRRLRCVGELLQNQF 413 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 R+GL R+ER V+ER+++ + +++ PQ +IN +P+ AA+KEFFGSSQLSQFMDQ NPL+E+ Sbjct: 414 RIGLTRMERVVRERMTIQETESITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLAEL 473 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSLS YA+ NE+ Sbjct: 474 THKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNYAKVNEF 533 Query: 585 GFLETPYRKV---------TDGV----VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE 631 GF+E PYRKV D V V+D + Y++A EE IAQANS LD EG+F Sbjct: 534 GFIEAPYRKVEKVYGKGKDADKVVKVRVSDSVVYMTADEEEGMTIAQANSPLDAEGYFTT 593 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 + V CR + + D+VDYMDVS ++VVS+G ++IPFLE+DDANRALMGANMQRQAVP Sbjct: 594 EHVACRRGHDVLEVTPDKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANMQRQAVP 653 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 LRA PLVGTGME A DSGV +A+ G V + I + + D +D Y Sbjct: 654 LLRAQAPLVGTGMEYTAATDSGVCVLAREAGKVVRCWGNEIHVLRDSD------GRVDTY 707 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 L K+ RSNQ+TC NQ P V+ G+ V +G VLADGP+TD GELALG N+ VAFMPW GYN Sbjct: 708 RLNKFLRSNQSTCFNQKPIVNRGDHVVKGQVLADGPATDGGELALGYNVLVAFMPWEGYN 767 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 +ED+IL+SE + +ED +T+IHI+E C +RDTKLG EEIT ++PN G+ L LDE GI+ Sbjct: 768 YEDAILLSEELCKEDIYTSIHIEEYECDARDTKLGAEEITRELPNTGDDTLKNLDEDGII 827 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 IGAEV GDILVGK TPKGET+LTPEE+LLRAIFG+K +V+D+SLRVP+G SG V+DV Sbjct: 828 CIGAEVHPGDILVGKATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGESGKVVDV 887 Query: 932 QVFTRD 937 +VFTR+ Sbjct: 888 KVFTRE 893 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 114/164 (69%), Positives = 136/164 (82%) Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 G+ IATPVFDGA E ++ E L + P G+ LYDGRTGE + VTVGY+YMLKL+HL Sbjct: 1149 GIHIATPVFDGAHEKDVFETLAIAGRPDDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHL 1208 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 VDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV Sbjct: 1209 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDV 1268 Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 GR K Y+ IV G + EPG+PESF VLLKE++S+G+++++ +E Sbjct: 1269 VGRVKAYEKIVKGENIPEPGVPESFKVLLKELQSIGLDVKILNE 1312 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 9/172 (5%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+L PGV K+V+VY+A KR+I GDKMAGRHGNKGV+S++ EDMP+ +GTPV IV Sbjct: 894 NGDELQPGVNKLVRVYIAQKRKIHEGDKMAGRHGNKGVVSRVMRKEDMPFLPDGTPVQIV 953 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINA-------MLKQQQEVAKLREFIQRAYD 1150 LNPLGVPSRMNIGQ+LETHLG A +G+G KI A +LK+ + A E I D Sbjct: 954 LNPLGVPSRMNIGQVLETHLGWAVQGLGMKIKATDLHIQNVLKEARTDASYWEQIDAIRD 1013 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 L A + + ++ D V EN + + + T + ++A K+L +G Sbjct: 1014 LYAQI-EALEAKVSEDVTVNHFEEN-EQIITLKTKILKHVEKAAQKKLDAMG 1063 >UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Tax=Bacteria RepID=RPOB_LEUCK Length = 1204 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/966 (45%), Positives = 599/966 (62%), Gaps = 121/966 (12%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R R+ + +VLDVP L+ IQ S+Q F+++ G++ F + PI + G Sbjct: 10 KHRTRRSYASIKEVLDVPNLIEIQTASYQWFLDE------GIKEMFGDIMPIDDFQGTLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+YV Y+L EP +++ E + YSAPL V LRL +E +IK Q+V+ GE Sbjct: 64 LEYVDYQLMEPKYNIDEAREHDANYSAPLHVTLRLTNHE-------TGEIKSQDVFFGEF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT+ GTF+ING ERVIVSQL RSPG++++ + K +G+ Y +IP RG+WL++E Sbjct: 117 PLMTEQGTFIINGAERVIVSQLVRSPGIYYNQENDK---NGRPRYGTTVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEK-----------VIFEIRDN 235 D K VRIDR RKL T ++RAL + ++ I+D+F ++ V ++ D+ Sbjct: 174 TDAKGIANVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQYDALNMTLEKDVHKDMSDS 233 Query: 236 KLQMEL--VPERLR-GETAS-----------------FDIEANGKVYVEKGRRITARHIR 275 +++ L V ERLR GE + +D+ + G+ + K + R + Sbjct: 234 RVEEALKDVYERLRPGEPKTADSSRALLVARFFDPKRYDLASVGRYKINKKLSLKTRLLN 293 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET 335 Q +A+ D +GE+I + +++KLS Sbjct: 294 Q-------------------TLAETLADPDSGEVIAEKGTLVDKTVMSKLS--------- 325 Query: 336 LFTNDLDHGPYIS----ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFS 391 P++ +T P+ D A++E EP T + + E+ Sbjct: 326 ---------PFLDREDFKTTTYTPSGD---AVLE--------EPVTLQKIK--IESPENP 363 Query: 392 EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 E L G + N +R DI+ M ++++ G G VDDIDHLGNR Sbjct: 364 EKTLLLIGNGHIDENDRTVRPA----------DILAGMNYFLNLQEGIGNVDDIDHLGNR 413 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 RIRSVGE+ +NQFR+GL R+ER V+ER+S+ D +T+ PQ +IN +P+ AAVKEFFGSSQL Sbjct: 414 RIRSVGELLQNQFRIGLTRMERVVRERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQL 473 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 SQFMDQ NPL E+ HKRR+SALGPGGLTR+RAG EVRDVH THYGR+ PIETPEGPNIGL Sbjct: 474 SQFMDQTNPLGEMNHKRRLSALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGL 533 Query: 572 INSLSVYAQTNEYGFLETPYRKV--TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 INSL+ Y + N+YGF+ETPYR+V T +VTD+I YL+A EE NY++AQANS L+++G F Sbjct: 534 INSLATYGRINKYGFIETPYRRVDWTTHMVTDKIDYLTADEEDNYIVAQANSPLNDDGSF 593 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 V D V R E+ D++DYMDVS +QVVSVG + IPFLE+DD+NRALMGANMQRQA Sbjct: 594 VHDTVMARFGEENIETPIDRIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQA 653 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 VP L PLVGTG+E A DSGV +++ GVV+YVD +I ++ + ++ D Sbjct: 654 VPLLDPHAPLVGTGIEYKAAHDSGVAMISRAAGVVEYVDGRQIRVRREDGQL-------D 706 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y L K+ RSN NQ P V GE VE +VLADGPS + GELALGQN +AFM W G Sbjct: 707 TYELMKFRRSNGGKNYNQKPIVHEGEHVEADEVLADGPSMEKGELALGQNPLIAFMTWQG 766 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YNFED+I+++ER+V+ED +T+IHI+E +RDTKLGPEE+T +IPN GE L LD G Sbjct: 767 YNFEDAIVLNERLVREDVYTSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQLKDLDADG 826 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 I+ +GAEV GDILVGKVTPKG T+L+ EE+LL AIFGEKA +V+D+SLRVP+G G V Sbjct: 827 IIRVGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGVVQ 886 Query: 930 DVQVFT 935 +V+++T Sbjct: 887 NVRIYT 892 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 144/305 (47%), Positives = 191/305 (62%), Gaps = 56/305 (18%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+LAPGV +V+VY+A KR+IQ GDKMAGRHGNKG +S + P E D+ Sbjct: 895 NGDELAPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSVVVPEE-----------DMP 943 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAK-GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 P G P IL + +G+ ++ IG + L Sbjct: 944 YMPDGTPI-----DILLSPMGVPSRMNIGQVLELHLG----------------------- 975 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 F+ +++ G+ +A+PVFDGA + EI+ L+ LP G+ +YDGR Sbjct: 976 -------FAAKKL---------GIHVASPVFDGASDDEIEAALREAGLPQDGKSVVYDGR 1019 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TGE F++ V VG M+ +KL H+VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVW Sbjct: 1020 TGEAFDKRVGVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1079 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 ALEAYGAAYTLQE+LT KSDDV GR K+Y++I+ G PG+PESF VL+KE+++LG++ Sbjct: 1080 ALEAYGAAYTLQEILTYKSDDVAGRVKVYESIIKGEPIPRPGVPESFRVLVKELQALGLD 1139 Query: 1337 IELED 1341 +++ D Sbjct: 1140 MQVLD 1144 >UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Tax=Leptospira RepID=RPOB_LEPBP Length = 1228 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1017 (42%), Positives = 609/1017 (59%), Gaps = 139/1017 (13%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE---QDPEGQY--GLEAAFRSVFPIQSYSG 64 R R +FGK + +P L+ +Q SF F++ +DP + GLEA FR FPI+S + Sbjct: 8 RNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESFPIESPNN 67 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + ++Y Y LGEP D QEC+ +++ PL+ +RL+I + +I+EQ VYM Sbjct: 68 DMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKD-------TGEIREQVVYM 120 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G++P+MTD+GTF+ING ERV+VSQLHRSPG+FF D+ + ++AR+IPYRGSWL Sbjct: 121 GDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQVRD------TFSARVIPYRGSWL 174 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +FE D K L +IDR++K PAT++++A+ T E++L LF Sbjct: 175 EFEMDNKGILVAKIDRKKKFPATLLVKAMGMGTNEEVLRLF------------------- 215 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 Y +I + + L++ + G+ D I+ Sbjct: 216 ------------------YGSSKMKIAGANPKDLKR------------LIGRRTIADIIN 245 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 TGE++ A +++ D ++ L + K ++ + P + L D ND A+ Sbjct: 246 METGEVMLDAGSKINEDNISILREMKVKEVDVIEFPKGKDNPVLINCLEKDGVNDYEDAV 305 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL-LREEIEGSG---- 418 + + +MRPGEP T E AE+ + LFFS +DL VGR K N E S Sbjct: 306 KKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFSKADDR 365 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEV--DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 +L K DII+ ++ L+ + + DDIDHLGNRRIRSVGE+ NQ ++G RVER +K Sbjct: 366 VLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRVERVIK 425 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+++ + + PQ +I+ KPI+A + EFFGSSQLSQFMDQ NPL+E+THKRR++ALGPG Sbjct: 426 ERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLNALGPG 485 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL+R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI S+S +A+ N+YGF+ETPYR V + Sbjct: 486 GLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPYRLVKN 545 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 G V ++ YL+A +E + +AQ+NS +DE+G F L++ R +G+ S ++ YMD++ Sbjct: 546 GKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQYMDLA 605 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS---- 712 QVVSV +LIPFLEHDDANRALMG+NMQRQAVP L + P VGTGME A D+ Sbjct: 606 PLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYDAGVCI 665 Query: 713 -----GVTAVAKRGGVVQYVDASRIVI--------KVNEDEMYPGEAGIDIYNLTKYTRS 759 GV + GV D S+ ++ K N+ + + + + + T + Sbjct: 666 VAKKDGVVSKVDATGVWIKEDQSKEIVHYPLIKFKKTNQGTCFNQKPNVSMLHTTTGGKV 725 Query: 760 NQ----------------------------NTCINQMPCVSLGEPV-------------- 777 ++ + + + V +G PV Sbjct: 726 SKVSKERVEVTTPNGEKETHELLLSDEVQFHAVVKEGQEVGIGAPVAGQIIKGEKYGDFG 785 Query: 778 ---ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 ++G VLA+GPSTD G LALG+N+ VAFMPW GYNFED+IL+SER++++D F++IHI+ Sbjct: 786 QILQKGTVLANGPSTDAGYLALGRNVLVAFMPWEGYNFEDAILISERIIKDDVFSSIHIE 845 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 E +R+TKLG E+IT DIPN+ + A LDESG++ +GAEV GDILVG VTPKGET Sbjct: 846 EFEIQARETKLGQEQITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTPKGETD 905 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 LTPE KLL +IFGEKA +V+DSSLR+PNG GTVID++ ++R+ D+ A +EEM Sbjct: 906 LTPEYKLLHSIFGEKAKEVRDSSLRMPNGFEGTVIDIKRYSRE--TGDELAAGVEEM 960 Score = 305 bits (781), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 158/313 (50%), Positives = 204/313 (65%), Gaps = 54/313 (17%) Query: 1029 LEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 ++ KR GD+LA GV ++VKVY+A KR++ GDKMAGRHGNKGV++++ EDMPY Sbjct: 940 IDIKRYSRETGDELAAGVEEMVKVYVARKRKLLVGDKMAGRHGNKGVVARVMAQEDMPYM 999 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 E+G+PVDIVLNPLGVPSRMN+GQI ET LG AAK +G + + +F ++A Sbjct: 1000 EDGSPVDIVLNPLGVPSRMNLGQIFETQLGFAAKKLGINFETPVFDGASEGDVNDFCKKA 1059 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 G+P + Sbjct: 1060 ------------------------------GLP------------------------ENS 1065 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 + +LYDGRTGE+F V GY+YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQ Sbjct: 1066 KFQLYDGRTGEKFINQVFCGYIYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQ 1125 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 R GEMEVWALEAYGA++TLQE+LT+KSDD+ GR ++Y+ IV G H ++PG+PESFNVL++ Sbjct: 1126 RLGEMEVWALEAYGASHTLQELLTIKSDDMLGRARIYEAIVKGIHSIKPGIPESFNVLVQ 1185 Query: 1329 EIRSLGINIELED 1341 E+R L ++I ++D Sbjct: 1186 ELRGLALDIIIKD 1198 >UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Tax=Bacteria RepID=RPOB_PELTS Length = 1224 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/644 (59%), Positives = 475/644 (73%), Gaps = 39/644 (6%) Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 L+ L ++ LF D + I ETL D T+ ALVEIY+ +RPGEPPT ++ Sbjct: 193 LVRALGYGTKAQVAELFNEDKN----ILETLARDNTDSEEEALVEIYKRLRPGEPPTVDS 248 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSL---------------------LREEI----E 415 A SL +LFF RYDL+ VGR K + L L++E+ E Sbjct: 249 ARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYRYGPNPDGKTVFDPYLKKEVPQKRE 308 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 L+K+DII+ ++ L+ + NG+G+VDDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V Sbjct: 309 FIRELTKEDIIETIRYLLKLMNGEGQVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVV 368 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 +ER+++ D+D + PQ +IN +P+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGP Sbjct: 369 RERMTIQDVDVITPQVLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGP 428 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV- 594 GGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ NE+GF+ETPYRKV Sbjct: 429 GGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINEFGFIETPYRKVD 488 Query: 595 -TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 + VTDEI YL+A EE YVIAQAN+ LDEEG F+E V RS E + D+VDYM Sbjct: 489 KENRRVTDEIVYLTADEEEGYVIAQANAPLDEEGRFIEPRVNARSP-EIVVVPADRVDYM 547 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DVS +QV S+ +LIPFLEHDDANRALMGANMQRQAVP L+A PLVGTG+E A DSG Sbjct: 548 DVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLLKAQAPLVGTGIEYKAARDSG 607 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 V +AK G V+ V ++ I I+ D Y +D Y L K+TRSNQ TC+NQ P V Sbjct: 608 VVVIAKESGTVEKVTSTHIEIR--NDRGY-----LDRYKLLKFTRSNQGTCVNQKPIVKK 660 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 GE VE G V+ADGPSTD GELALG+N+ VAFMPW GYN+ED+ILVSE+ V+ED FT+IHI Sbjct: 661 GERVEAGQVIADGPSTDYGELALGRNVLVAFMPWEGYNYEDAILVSEKTVKEDYFTSIHI 720 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E C +RDTKLGPEEIT DIPNVGE L LD+ GI+ +GAEV GDILVGKVTPKGET Sbjct: 721 EEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDILVGKVTPKGET 780 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 +LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV+VF+RD Sbjct: 781 ELTAEERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSRD 824 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 177/345 (51%), Positives = 228/345 (66%), Gaps = 48/345 (13%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+L PGV ++V+VY+A KR+I GDKMAGRHGNKGVI++I P EDMP+ +GTP++IV Sbjct: 825 NGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPIEIV 884 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNPLGVPSRMNIGQ+LE HLG AAK +G ++ + + E ++ A + +R Sbjct: 885 LNPLGVPSRMNIGQVLEAHLGWAAKVLGYYVSTPVFNGASEESIFEALKEAAFKESGLRS 944 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL------------------- 1198 ++ + ++EE++ E K G++EA IKE+ Sbjct: 945 FMEKAGLNEEELIGAVETAEKRA--------GSREALIKEVEGAESSGETIMAAIERTGL 996 Query: 1199 ---------------------LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 +K SG++ LYDGRTGE F+ P+TVGY+YMLKL H Sbjct: 997 TAGMVNRLEEAGMTKKEILGAMKKLLFARSGKMTLYDGRTGEPFDSPITVGYVYMLKLAH 1056 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 LVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDD Sbjct: 1057 LVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDD 1116 Query: 1298 VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 V GR K Y+ IV G + EPG+PESF VL+KE++SLG+++++ E Sbjct: 1117 VVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGLDVKVLSE 1161 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 20/239 (8%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y R+R +FG+ +VLD+P L+ +Q +S++ F+E+ GL F+ + PIQ Sbjct: 1 MAYPEKVGARVRYNFGRLREVLDLPNLIEVQRNSYKWFLEE------GLREVFQDISPIQ 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 55 DFTGNLVLEFLDYTLGEPKYTVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +V+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+FD SGK LY A IIP R Sbjct: 108 DVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFDE---TIDPSGKKLYTATIIPNR 164 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFE-KVIFEI--RDN 235 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y T+ Q+ +LF E K I E RDN Sbjct: 165 GAWLEFETDVNDHIFVRIDRTRKIPATVLVRALGYGTKAQVAELFNEDKNILETLARDN 223 >UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridia RepID=RPOB_CARHZ Length = 1132 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/643 (58%), Positives = 471/643 (73%), Gaps = 37/643 (5%) Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 LL L RI LF DH I TL D T+ R AL+EIY+ +RPGEPPT E+ Sbjct: 192 LLKALGYESKGRIAELF----DHDDKIIATLERDNTDSREEALIEIYKKLRPGEPPTVES 247 Query: 381 AESLFENLFFSEDRYDLSAVGRMKF----NRSLLREEIEGSGI----------------- 419 A++L +++FF RYDL VGR K N +L +E G Sbjct: 248 AKTLLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLEEDGEKEYDKYLNDYVPVKREF 307 Query: 420 ---LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 L+ +DII ++ L+ + G+G+VDDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ Sbjct: 308 IRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVR 367 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+++ D D+L PQ +IN +PI AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPG Sbjct: 368 ERMTIQDADSLTPQVLINTRPIVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPG 427 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ YA+ NE+GF+ETPYRKV Sbjct: 428 GLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGNLTTYARVNEFGFIETPYRKVDK 487 Query: 597 --GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 GVVT+EI YL+A EE Y+IAQAN L EG F++++V R E +VD++D Sbjct: 488 ERGVVTNEIVYLTADEEEKYIIAQANVRLSPEGKFLDEMVNARHGSEILHVEPSKVDFVD 547 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS +QV SV SLIPFLEHDDANRALMGANMQRQAVP +R + P+VGTG+E A DSGV Sbjct: 548 VSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAVPLIRTEAPVVGTGIEYKAAKDSGV 607 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 +AK GVV+ V A IVI+ ++ + ID Y L K+ RSNQ TCINQ P V G Sbjct: 608 VVLAKNPGVVERVTADEIVIRNDQGQ-------IDRYKLIKFQRSNQGTCINQKPIVRKG 660 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 E VE+ ++ADGPSTD GELALG+N+ VA+MPW GYN+ED+IL+SE++V+ED FT+IHI+ Sbjct: 661 ERVEKDQIIADGPSTDHGELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIE 720 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 E C +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GDILVGKVTPKGET+ Sbjct: 721 EYECDARDTKLGPEEITRDIPNVGEDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETE 780 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV+VF+R+ Sbjct: 781 LTAEERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSRE 823 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 171/302 (56%), Positives = 210/302 (69%), Gaps = 54/302 (17%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+L+PGV +V+VY+A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTPV+IV Sbjct: 824 NGDELSPGVNMLVRVYIAQKRKISVGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVEIV 883 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNPLGVPSRMNIGQILE HLG AAK +G Sbjct: 884 LNPLGVPSRMNIGQILECHLGWAAKALG-------------------------------- 911 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 ++++T P+F+GA E +I E L+ LP G+I + DGRT Sbjct: 912 -INVAT---------------------PIFNGATEEDIFEALRKAGLPEDGKIEVRDGRT 949 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 GE F+ VTVGY+YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWA Sbjct: 950 GEPFDSRVTVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1009 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 LEAYGAAYTLQE+LT+KSDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG+++ Sbjct: 1010 LEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQSLGLDV 1069 Query: 1338 EL 1339 ++ Sbjct: 1070 KV 1071 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 150/217 (69%), Gaps = 17/217 (7%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K+IR + K P++L++PYL+ IQ S+Q F+++ GL FR + PI ++GN L Sbjct: 8 KKIRYSYAKFPEILELPYLIEIQKKSYQWFLDE------GLREVFREISPITDFTGNLSL 61 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 +++ Y LG+P + V+EC+ R TYSAPLRVK+RL+ E +IKEQEV++G+ P Sbjct: 62 EFLDYYLGKPKYSVEECKERDFTYSAPLRVKVRLLNKE-------TGEIKEQEVFLGDFP 114 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 LMT+ GTF+ NG ERV++SQ+ RSPGV+F + +GK +Y A IIP RG+WL+FE Sbjct: 115 LMTEKGTFIFNGAERVVISQMVRSPGVYFSE---QVDPNGKKMYLATIIPNRGAWLEFET 171 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLF 224 D D+++VRIDR RKLP T++L+AL Y ++ +I +LF Sbjct: 172 DVNDHIYVRIDRTRKLPVTVLLKALGYESKGRIAELF 208 >UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3X7_DESAS Length = 1227 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/630 (56%), Positives = 460/630 (73%), Gaps = 46/630 (7%) Query: 347 ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 I ETL D T ALVEIY+ +RPGEPPT E+A +L E LFF RYDL+ VGR K + Sbjct: 218 IQETLSRDNTGSEEDALVEIYKRLRPGEPPTVESARTLLETLFFDPKRYDLANVGRYKLH 277 Query: 407 RSL-----LREEIEGSGILSKD--------------------DIIDVMKKLIDI------ 435 + L R E SG + D DI+D +K L+ + Sbjct: 278 KKLQHGVLYRYPEEQSGKIEYDEILKQELPVEREFIRELTPKDILDTIKYLLRLVQGITE 337 Query: 436 ------RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP 489 RN + VDDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ER+++ D+D + P Sbjct: 338 EKDPLGRNIEYTVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVDVITP 397 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 Q +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGFEVRD Sbjct: 398 QVLINIRPVVASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRD 457 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG--VVTDEIHYLS 607 VH +HYGR+CPIETPEGPNIGLI SLS YA+ N++GF+ETPYR+V +VT+EI YL+ Sbjct: 458 VHHSHYGRMCPIETPEGPNIGLIGSLSTYARINQFGFIETPYRRVDKEKRIVTNEIEYLT 517 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 A E +IAQAN+ L++EG F E V R E +++D+MDVS +QV S+ +L Sbjct: 518 ADVEDRNIIAQANAPLNKEGFFTEQAVNARHGHEILKVPGEKIDFMDVSPKQVFSIATAL 577 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 IPFLEHDDANRALMGANMQRQAVP ++A P+VGTG+E A DSGV +A++ G+V+ V Sbjct: 578 IPFLEHDDANRALMGANMQRQAVPLVKAQAPVVGTGVEYKAARDSGVVPLARKSGIVEKV 637 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 A+ I+I+ ++ D + L K+TRSNQ TCINQ P V+ G+ V+ GD++ADGP Sbjct: 638 TANDIMIRSDD-------GTSDYHKLLKFTRSNQGTCINQRPIVTKGQRVDEGDIIADGP 690 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 +TD GELALG+N+ VAFMPW+GYN+ED+IL+SE+ V+ED FT+IHI+E C +RDTKLGP Sbjct: 691 ATDNGELALGRNILVAFMPWDGYNYEDAILISEKAVKEDFFTSIHIEEYECDARDTKLGP 750 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 EEIT DIPNVGE L LD+ GI+ +GAEV GDI+VGKVTPKGET+LT EE+LLRAIFG Sbjct: 751 EEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGKVTPKGETELTAEERLLRAIFG 810 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 EKA +V+D+SLRVP+G +G ++DV+VF+RD Sbjct: 811 EKAREVRDTSLRVPHGEAGKIVDVKVFSRD 840 Score = 335 bits (859), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 170/305 (55%), Positives = 211/305 (69%), Gaps = 54/305 (17%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+L PGV +V+VY+A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTP++IV Sbjct: 841 NGDELPPGVNHLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPFLPDGTPIEIV 900 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNPLGVPSRMNIGQ+LETH LG R Sbjct: 901 LNPLGVPSRMNIGQVLETH----------------------------------LGWAAR- 925 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 + G ++TPVF+GA E++I E L+ DLP + + L+DGRT Sbjct: 926 -------------------KLGCYVSTPVFNGATESDILEFLRKADLPDTAKTTLHDGRT 966 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 GE F+ P+TVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWA Sbjct: 967 GEPFDNPITVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1026 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 LEAYG+AYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG+++ Sbjct: 1027 LEAYGSAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGLDV 1086 Query: 1338 ELEDE 1342 ++ E Sbjct: 1087 KVLSE 1091 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 154/221 (69%), Gaps = 16/221 (7%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MVY+ R R +FGK +VLD+P L+ +Q +S++ F++ GL F + PIQ Sbjct: 4 MVYAEKLGTRERLNFGKFKEVLDLPNLIEVQRNSYKWFLKN------GLREVFHDISPIQ 57 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 58 DFTGNLVLEFLDYTLGEPKYFVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+F + SGK L++A IIP R Sbjct: 111 EVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFAE---QIDPSGKKLFSATIIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y+++ ++ Sbjct: 168 GAWLEFETDVNDHVFVRIDRTRKIPATVLIRALGYSSDAMV 208 >UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 Tax=Bacteria RepID=RPOB_MYCLB Length = 1178 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/603 (58%), Positives = 450/603 (74%), Gaps = 22/603 (3%) Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 TL D T AL++IYR +RPGEPPT+E+A++L ENLFF E RYDL+ VGR K N+ L Sbjct: 261 TLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKL 320 Query: 410 LRE--EIEGSGILSKDDIIDVMKKLIDIRNGKG------------EVDDIDHLGNRRIRS 455 E+ S L+++D++ ++ L+ + G+ E DDIDH GNRR+R+ Sbjct: 321 GLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRT 380 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VGE+ +NQ RVG+ R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFFG+SQLSQFM Sbjct: 381 VGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFM 440 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQNNPLS +THKRR+SALGPGGL+RERAG EVRDVHP+HYGR+CPIETPEGPNIGLI SL Sbjct: 441 DQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSL 500 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 SVYA+ N +GF+ETPYRKV DGVV+DEI YL+A EE +V+AQANS +DE G F+E V Sbjct: 501 SVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVL 560 Query: 636 CRSK-GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 R K GE + +VDYMDVS +Q+VSV ++IPFLEHDDANRALMGANMQRQAVP +R Sbjct: 561 VRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVR 620 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 ++ PLVGTGME A+D+G VA++ GV++ V A I + ++ Y + Sbjct: 621 SEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRR-------TYRMR 673 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 K+ RSN TC NQ P V G+ VE G V+ADGP T+ GE+ALG+N+ VA MPW G+N+ED Sbjct: 674 KFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYED 733 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 +I++S R+V+ED T+IHI+E +RDTKLG EEIT DIPNV + L+ LDE GIV IG Sbjct: 734 AIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIG 793 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 AEV GDILVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G SG VI ++VF Sbjct: 794 AEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVF 853 Query: 935 TRD 937 + + Sbjct: 854 SHE 856 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 169/312 (54%), Positives = 211/312 (67%), Gaps = 45/312 (14%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L GV ++V+VY+A KR+I GDK+AGRHGNKGVI KI P EDMP+ +GTPVDI+LN Sbjct: 859 DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILN 918 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 GVP RMN+GQILETHLG AK K+ Sbjct: 919 THGVPRRMNVGQILETHLGWVAKS--------------------------------GWKI 946 Query: 1160 DLSTFSDEEVMRLAENLRKGMP---IATPVFDGAKEAEIKELLKLGDLPT---------S 1207 D++ + + L E L P ++TPVFDGAKE E++ LL LP Sbjct: 947 DVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLS-STLPNRDGDVMVGGD 1005 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G+ L+DGR+GE F PVTVGYMY++KL+HLVDDK+HARSTG YS++TQQPLGGKAQFGG Sbjct: 1006 GKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1065 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QRFGEME WA++AYGAAYTLQE+LT+KSDD GR K+Y+ IV G + EPG+PESF VLL Sbjct: 1066 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLL 1125 Query: 1328 KEIRSLGINIEL 1339 KE++SL +N+E+ Sbjct: 1126 KELQSLCLNVEV 1137 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 135/226 (59%), Gaps = 24/226 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFI-------------EQDPEGQYGLEAAFRSVFP 58 R F K + L+VP LL +Q DSF+ I + P G GLE + P Sbjct: 38 RISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVG--GLEEVLYELSP 95 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+ +SG+ L + R E V+EC+ + +TY+APL V + +IK Sbjct: 96 IEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFI-------NNNTGEIK 148 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 Q V+MG+ P+MT+ GTF+INGTERV+VSQL RSPGV+FD K S+ K L++ ++IP Sbjct: 149 SQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDK--STEKTLHSVKVIP 206 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 RG+WL+F+ D +D + VRIDR+R+ P T++L+AL +T+EQI + F Sbjct: 207 SRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERF 252 >UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Tax=Bacteria RepID=RPOB_FRASC Length = 1141 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/620 (56%), Positives = 460/620 (74%), Gaps = 13/620 (2%) Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 P + TL D T + AL++IYR +RPGEPPTRE+A++L ENLFF+ RYDL+ VGR K Sbjct: 232 PSMRITLEKDHTAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRYK 291 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG----EVDDIDHLGNRRIRSVGEMA 460 N+ L G+L+++DI+ ++ ++ + G EVDDIDH GNRRIR+VGE+ Sbjct: 292 VNKKLSLGVAHDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTVGELI 351 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 +NQ R+GL R+ER V+ER++ D++ + PQ +IN +P+ A++KEFFG+SQLSQFMDQ NP Sbjct: 352 QNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQTNP 411 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L+ +THKRR++ALGPGGL+RERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SLS +A+ Sbjct: 412 LAGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSTFAR 471 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK- 639 N +GF+ETPYRKV +G VT +I +L+A EE +V AQAN+ L +G F ED V R K Sbjct: 472 VNPFGFIETPYRKVENGRVTGQIDWLTADEEDRHVKAQANTPLRPDGSFAEDRVLVRRKG 531 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 GE D+VDYMDVS +Q+VSV ++IPFLEHDDANRALMG+NMQRQ+VP LR++ PL Sbjct: 532 GEVEFIPPDEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMQRQSVPLLRSEAPL 591 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 VGTGME A D+G V + GVV+ + A I + ++ Y L K+ RS Sbjct: 592 VGTGMEARAAKDAGDVVVCAQAGVVEDLSADYITVMHDDGTRR-------TYRLAKFRRS 644 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 NQ TCINQ P V+ G+ V G V+ADGP TD GE+ALG+N+ VAFMPW G+N+ED+I++S Sbjct: 645 NQGTCINQKPIVNEGDRVGAGQVIADGPCTDNGEMALGKNLLVAFMPWEGHNYEDAIILS 704 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 +R+VQ+D ++IHI+E +RDTKLGPEEIT DIPNV E L+ LDE GI+ IGAEV+ Sbjct: 705 QRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVLADLDERGIIRIGAEVSP 764 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DG 938 GD+LVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G SG VI V+VF+R DG Sbjct: 765 GDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSREDG 824 Query: 939 VEKDKRALEIEEMQLKQAKK 958 E E+ + + Q +K Sbjct: 825 DELPPGVNELVRVYVAQKRK 844 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 178/310 (57%), Positives = 220/310 (70%), Gaps = 40/310 (12%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV ++V+VY+A KR+I GDK+AGRHGNKGVI+KI P EDMP+ E+GTPVD+VL Sbjct: 824 GDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAKILPAEDMPFLEDGTPVDVVL 883 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP GVP RMNIGQILETHLG AK G ++++ + +E R +GAD Sbjct: 884 NPHGVPRRMNIGQILETHLGWVAK-TGWQVDSGTEDWKE---------RLRGIGADAAS- 932 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP---------TSGQ 1209 G +ATPVFDGA+E EI LL LP +SG+ Sbjct: 933 -------------------AGTNVATPVFDGAREEEITGLLD-STLPNRDGIQLIGSSGK 972 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 +L+DGRTGE + PV VGY+Y+LKL HLVDDK+HARSTG YS++TQQPLGGKAQFGGQR Sbjct: 973 AKLFDGRTGEPYPYPVAVGYIYILKLLHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQR 1032 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 FGEMEVWALEAYGAAY LQE+LT+KSDDV GR K+Y+ IV G + EPG+PESF VL+KE Sbjct: 1033 FGEMEVWALEAYGAAYALQELLTIKSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLIKE 1092 Query: 1330 IRSLGINIEL 1339 ++SL +N+E+ Sbjct: 1093 MQSLCLNVEV 1102 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 132/226 (58%), Gaps = 25/226 (11%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----------------YGLEAAFRSVFP 58 F K + L+VP LL++Q SF I D + GLE F+ + P Sbjct: 12 FAKIIEPLEVPDLLALQTQSFDWLIGSDAWAERVQEAIDSGRDDVPITSGLEEVFKEISP 71 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+ +SG+ L + +R P + V+EC+ + +T+SAPL V E +IK Sbjct: 72 IEDFSGSMSLSFRDHRFEPPKYSVEECKDKDMTFSAPLFVTA-------EFTNNNTGEIK 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 Q V+MG+ PLMT GTFVINGTERV+VSQL RSPGV+F+ K +S K LY+ ++IP Sbjct: 125 SQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDK--ASDKDLYSCKVIP 182 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 RG+WL+FE D +D + VRIDR+R+ T++L+AL + +IL+ F Sbjct: 183 SRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARILERF 228 >UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Tax=cellular organisms RepID=RPOB_SYNJB Length = 1139 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/602 (56%), Positives = 437/602 (72%), Gaps = 10/602 (1%) Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 ++L H + +T+ + AL+E+YR +RPGEPPT + L E+ FF RYDL Sbjct: 206 DNLRHPEFFQKTMEKEGPYTEEEALMELYRKLRPGEPPTVSGGQQLLESRFFDPKRYDLG 265 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 VGR K N+ L E +L+ DI+ V+ LI++ G VDDIDHLGNRR+RSVGE Sbjct: 266 RVGRYKLNKKLNLNVAESVRVLTVTDILAVIDYLINLEYDIGHVDDIDHLGNRRVRSVGE 325 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQ RVGL R+ER ++ER+++ + + L P ++N KP+ AA+KEFFGSSQLSQFMDQ Sbjct: 326 LLQNQVRVGLNRLERIIRERMTVSESENLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQT 385 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+E+THKRR+SALGPGGL+RERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+ + Sbjct: 386 NPLAELTHKRRLSALGPGGLSRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATH 445 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 A+ N+YGF+E+PY +V +GVV ++ YL+A EE Y +A + +D EG DLV Sbjct: 446 ARVNQYGFIESPYYRVENGVVRKDLGMVYLTADEEDEYRVAPGDVPVDAEGRITADLVPV 505 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + E + +V Y+ V+ QV+SV SLIPFLEHDDANRALMGANMQRQAVP L+ D Sbjct: 506 RYRQEFTTAHPTEVHYVQVAPVQVISVATSLIPFLEHDDANRALMGANMQRQAVPLLKPD 565 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI-YNLTK 755 +P VGTG+E A DSG+ V++ GVV YV A IV++ P + G I Y L K Sbjct: 566 RPYVGTGLEAQAARDSGMVVVSRTNGVVTYVSADEIVVR-------PDDGGDPIVYRLQK 618 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 Y RSNQ+TC+NQ P V G+ V G VLADGP+T+ GELALGQN+ VA+MPW GYN+ED+ Sbjct: 619 YQRSNQDTCLNQRPLVYTGDRVVAGQVLADGPATEGGELALGQNVLVAYMPWEGYNYEDA 678 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 IL+SER+V +D FT++HI++ +R TKLGPEEIT +IPNVGE AL LDE+GIV IGA Sbjct: 679 ILISERLVYDDVFTSVHIEKHEIEARQTKLGPEEITREIPNVGEDALRDLDENGIVRIGA 738 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 V GDILVGKVTPKGE+ PEE+LLRAIFGEKA DV+D+SLRVPNG G V+DV++FT Sbjct: 739 WVEAGDILVGKVTPKGESDQPPEERLLRAIFGEKARDVRDNSLRVPNGERGRVVDVRIFT 798 Query: 936 RD 937 R+ Sbjct: 799 RE 800 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 202/491 (41%), Positives = 278/491 (56%), Gaps = 67/491 (13%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ +VY G V G +L G T GE L + +L A + + +D+ L Sbjct: 628 LNQRPLVYTGDRVVAGQVLADGPATEGGELALG--QNVLVAYMPWEGYNYEDAIL----- 680 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE--------LQILEAGLFSRI 975 +S ++ VFT +EK EIE Q K ++++ E L+ L+ RI Sbjct: 681 ISERLVYDDVFTSVHIEKH----EIEARQTKLGPEEITREIPNVGEDALRDLDENGIVRI 736 Query: 976 RAVLVAGGVEAEKL------DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL 1029 A + AG + K+ D+ P +R L ++ + + L E + ++ Sbjct: 737 GAWVEAGDILVGKVTPKGESDQPPEERLLRAIFGEKARDVRDNSLRVPNGERGRVVDVRI 796 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 + QGD+L PG +V+VY+A+KR+IQ GDK+AGRHGNKG+IS+I PIEDMPY Sbjct: 797 FTRE----QGDELPPGANMVVRVYIALKRKIQVGDKIAGRHGNKGIISRILPIEDMPYLA 852 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 +GTPVD+VLNPLGVPSRMN+GQ+ E LG AA+ +G + KL F Sbjct: 853 DGTPVDVVLNPLGVPSRMNVGQVYECLLGWAAEHLGVRF-----------KLMPF----- 896 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 D ++ S + E +R A+E K+ + + G+ Sbjct: 897 ----DEMHGLEASRLTVEAKLR-----------------EAREKTGKDWIFNPEGKYCGK 935 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 I+++DGRTGE F++PVTVG YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQR Sbjct: 936 IQVFDGRTGEPFDQPVTVGRAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQR 995 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 FGEMEVWALEA+GAAY LQE+LTVKSDD+ GR + IV G PG PESF VL++E Sbjct: 996 FGEMEVWALEAFGAAYILQELLTVKSDDMVGRNEALNAIVKGKPIPRPGTPESFKVLVRE 1055 Query: 1330 IRSLGINIELE 1340 ++SL +++ + Sbjct: 1056 LQSLCLDVSVH 1066 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 128/226 (56%), Gaps = 31/226 (13%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV------- 71 P P L+ IQ +SF F+ + G E S PI Y+G EL ++ Sbjct: 9 PVAPTFPDLVEIQRESFLWFLRE------GFEEELLSFSPIIDYTGKLELHFLPEYRPGD 62 Query: 72 ---SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 Y++ P +D +E + R TY A +RV RL+ E +IK+ +V++GE+P Sbjct: 63 PSKGYKINRPRYDPEEAKRRDATYQAQIRVPTRLINKE-------TGEIKDMDVFIGELP 115 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 LMTD GTF+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE Sbjct: 116 LMTDRGTFIINGAERVIVNQIVRSPGVYYKSELDK---NGRRTYSASLIPNRGAWLKFET 172 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILD-----LFFEKVI 229 D ++VRID+ RKL A ++L+AL + +I D FF+K + Sbjct: 173 DKNGLVWVRIDKTRKLSAAVLLKALGLSDSEIYDNLRHPEFFQKTM 218 >UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN5_FIBSS Length = 1429 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/800 (47%), Positives = 515/800 (64%), Gaps = 101/800 (12%) Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL---VTCRSKGE-SSLFSRD- 648 V + +V+D I YL+A EE ++ +A A++ LDE F D+ V R K E L +D Sbjct: 671 VVEQIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQDS 730 Query: 649 ---------QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 ++D MDV+ Q+VSV A LIPFLEHDDANRALMG+NMQRQAVP LRA+ P+ Sbjct: 731 IAIGDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLLRAEAPV 790 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK--------------VNEDEMYPGE 745 VGTG+ER A+DSG AK G V +VDA I ++ + E+ + G+ Sbjct: 791 VGTGLERRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLGK 850 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 ID Y L K+ RSNQ++CINQ P V++G+ VE GDVLADG STD GELALG+N+ + F+ Sbjct: 851 DPIDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVSTDHGELALGKNILIGFL 910 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PWNGYN+ED++++SE + +D FT+IHI+E RDTK GPEE+T +IPNVGE AL L Sbjct: 911 PWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDALRNL 970 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE+G++ +GAEV DILVGKVTPKGET+LTPEE+LLRAIFGEKA DV+DSSL+ P G+ Sbjct: 971 DENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAPPGMK 1030 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G V++ ++F++ K + +E +++ +++ ++ ++ + L+AG Sbjct: 1031 GVVLETRIFSKKDKADKKSKEKDQET-IEEIRQNFQSQIDRIKDACREHLFD-LLAGKSA 1088 Query: 986 AEKLDKLPRDRWLELGLT-----------------------DEEKQNQLEQLA----EQY 1018 + +D + + G T D++ Q+++ L + Sbjct: 1089 GKVMDNETHELLIREGQTYNEQNLRLIDVTKVSPLSTFVVDDDDLQDKVLSLVLVARDNL 1148 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 D L EK+++ K+T+GD+L PGVLK VKVY+A KR + GDKMAGRHGNKGV+S+ Sbjct: 1149 DTLTRTMEKEID----KVTKGDELKPGVLKSVKVYIAKKRCLSIGDKMAGRHGNKGVVSR 1204 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I P+EDMP+ E+G P+ I+LNPLGVPSRMNIGQ+LE HLG AAK +G K+ + + Sbjct: 1205 IVPVEDMPFTEDGRPLQILLNPLGVPSRMNIGQVLEVHLGWAAKTLGFKVTTPVFDGAKF 1264 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 + + +++AY QK P+ + + + ++ Sbjct: 1265 EDICKELEKAY-------QK-------------------------NPIVNYEMDPDNNKI 1292 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 + G+ +LYDG+TGE PVT+GYMY LKL HLVDDK+HARS GSY+LVTQQP Sbjct: 1293 I--------GKAKLYDGKTGEALLNPVTIGYMYYLKLGHLVDDKIHARSIGSYALVTQQP 1344 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGK+QFGGQRFGEMEVWA+EAYGAAYTLQE+LTVKSDDV GR+K+Y IV G + +PG Sbjct: 1345 LGGKSQFGGQRFGEMEVWAMEAYGAAYTLQELLTVKSDDVQGRSKVYDAIVKGQNTPKPG 1404 Query: 1319 MPESFNVLLKEIRSLGINIE 1338 +PESFNV+++E+ SLG++IE Sbjct: 1405 IPESFNVMIREVHSLGLDIE 1424 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 244/615 (39%), Positives = 355/615 (57%), Gaps = 81/615 (13%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD-PEGQ---YGLEAAFRSVFPIQSYSGNSE 67 RK + L++PYL+ +Q S+++F+++D P+ + GLE FR +FPI Sbjct: 5 RKSYSSNKFHLELPYLIEVQKASYEQFLQKDIPQEKRMNVGLERVFRDIFPITDDKDLYS 64 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+Y Y G P + + EC+ RG+TYS L L L ++E++ E +K+ + +V + ++ Sbjct: 65 LKYEGYYFGIPKYSIPECRERGLTYSMELFATLSLQVFEKDGEESKLKEEIKNDVLVCDL 124 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MT+NGTF+ING ERV+VSQLHRSPGV FD + +G+ Y +RIIP+RG+W++F Sbjct: 125 PIMTENGTFIINGAERVVVSQLHRSPGVSFDEE---MQPNGRSDYKSRIIPHRGAWVEFN 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 + D L++ IDR++K+ AT +LR + + TT+ IL+LF++K E + Sbjct: 182 TE-GDILYLIIDRKKKIAATAMLRCIGFETTQDILNLFYKKT--------------DEIV 226 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 + A D + G V + +++ D +DE T Sbjct: 227 LDDAAFNDFDKEG-----------------------------VCTLINRIIFNDVVDEET 257 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 GE+I AN + L +L +S ++I T+ + + D+ I TL D T R AL + Sbjct: 258 GEIILEANTVIDDKKLERLRESSVEKI-TVLSKEEDN-LLIHYTLAADKTKSREDALKAV 315 Query: 367 YRMM--RPGEPPTREAAESLFENLFFSE-DRYDLSAVGRMKFNRSLLREEIEGS------ 417 Y + + E P + AE F+ LF ++ +YDL VGR + N + I Sbjct: 316 YSVTHQQQEEAPNLQTAERYFDELFLNDPHKYDLGEVGRYRLNAKVYTAAILAKVKEVAE 375 Query: 418 ---------------GILSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGEMA 460 +SK D + +++ ++ + NG +DDIDHLGNRR RSVGE+ Sbjct: 376 RFDRVNEFKMPSVTQMTMSKTDFLAIIEYMVGLFNGDEGYTLDDIDHLGNRRTRSVGELL 435 Query: 461 ENQFRVGLVRVERAVKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 Q VGL R+ R ++E LSL + + P++++N + +S V+ FFG SQLSQFMDQ N Sbjct: 436 AGQISVGLSRMSRVIRENLSLHSEEEQTTPRELVNTRMVSTVVQAFFGQSQLSQFMDQMN 495 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 PLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ YA Sbjct: 496 PLSELTHKRRLSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLINSLASYA 555 Query: 580 QTNEYGFLETPYRKV 594 N +GF+ETPYR V Sbjct: 556 VVNHFGFIETPYRIV 570 >UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 Tax=Bacteria RepID=RPOB_MYCCT Length = 1287 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/872 (44%), Positives = 569/872 (65%), Gaps = 88/872 (10%) Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG +F+ + + +G+++Y A II Sbjct: 180 KSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPGAYFNKELNR--KTGEMIYFADII 237 Query: 178 PYRGSWLDFEFDPK-------DNLFVRIDRRRKLPATIILRALNYTTEQILDLF-FEKVI 229 P RG+WL++E D K + L+V+ID+ RK AT +L A + + IL++F ++V+ Sbjct: 238 PSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDILNIFDNDEVL 297 Query: 230 FE-------IRDNKL----QMELVPERLR-GETASFDIEA---NGKVYVEKGRRIT-ARH 273 E I D K+ Q++ + +++R GETA+ + + N ++ ++ +T A Sbjct: 298 VETLQQDSIIGDFKIDWSNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGR 357 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + +K +K I KV+A+D +D + LI A + E++ + + ++S+ + + Sbjct: 358 FKLKQKLSIK------NRILNKVIAEDILDANNNVLI-AKDTEVTKNNIQEISKILDQDV 410 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 ++ DL Y+S+ P N ++ + +Y+ SE Sbjct: 411 MSI---DL---KYLSDI----PGNRKVQK-IRVYKD---------------------SEL 438 Query: 394 RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + D + + + N S EE ++ DI+ + L++++ GE+DDID+LGNRR+ Sbjct: 439 KTDTTCLIGLT-NSS--NEEF-----ITVADILSTVSYLLNLKYNIGEIDDIDNLGNRRV 490 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 R+VGE+ +NQFR+GL R+++ VKE+L+ DL + +INAKP++A + EFF SQLSQ Sbjct: 491 RTVGELLQNQFRMGLNRIDKNVKEKLATSDLYKVKTSTIINAKPLTAIIGEFFNLSQLSQ 550 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPLSE+T+KRR++ALGPGGL+R+RAG EVRDVHP+HYGR+CPIETPEGPNIGLIN Sbjct: 551 FMDQINPLSELTNKRRLTALGPGGLSRDRAGLEVRDVHPSHYGRICPIETPEGPNIGLIN 610 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVED 632 +LS YA+ NEYGF+ TPYRKV +G++ D++ YL+A +E N++IAQ+N N DE G +++ Sbjct: 611 NLSTYARVNEYGFITTPYRKVINGIIQNDQVEYLTADQEKNFIIAQSNVNQDENGKILDE 670 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 ++ R G+ + +++ Y+DVS +Q+VSV S IPFLE+DDANRALMGANMQRQAVP Sbjct: 671 IIVSRFNGDDYMAKVEEIHYIDVSPKQIVSVATSGIPFLENDDANRALMGANMQRQAVPL 730 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 ++ + P+V TG+E A DSG VAK +V+YVD+ I+ GE+GI Y Sbjct: 731 IKPESPIVATGIEFEAARDSGEAIVAKEDAIVKYVDSKTIITD--------GESGIRTYI 782 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 L+ Y RSN T + Q P V +G+ V++G+++ADGPS D GELA+GQN+ VAF +NGYNF Sbjct: 783 LSDYERSNNGTSLTQSPIVKVGDVVKKGEIIADGPSMDQGELAIGQNVVVAFSTYNGYNF 842 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 ED+I++SER+V +DRFT+IHI E R+TK G EE+T +IPN+ E A LD GIV Sbjct: 843 EDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTREIPNMSEQAKRHLDAEGIVA 902 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 IG EV GD+LVGKVTPKG+ QL+PE+KLL AIFGEK+ +VKD+SLRVPNG G V ++ Sbjct: 903 IGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRNVKDNSLRVPNGGEGIVQSIK 962 Query: 933 VFTR------DGVEKDKRALEIEEMQLKQAKK 958 F DG+E +E+ ++ + Q +K Sbjct: 963 RFKAKSALNPDGIELPADIIEVIKVYVVQKRK 994 Score = 322 bits (824), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 166/316 (52%), Positives = 210/316 (66%), Gaps = 54/316 (17%) Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 K+ +AK G +L +++++KVY+ KR+IQ GDKM+GRHGNKG+IS+I PIEDMP Sbjct: 962 KRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKMSGRHGNKGIISRILPIEDMP 1021 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 + E+GTPVDI+LNP GVPSRMNIGQILE HLGMAAK K+N Sbjct: 1022 HLEDGTPVDIILNPQGVPSRMNIGQILEIHLGMAAK----KLN----------------- 1060 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 QKV TPVF+G E E++E++ + Sbjct: 1061 ----------QKV-----------------------ITPVFEGLNEKELEEIMAEAGMTN 1087 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 G++ L DG+TGE F++P+ VG MYMLKL+H+VDDK+HAR+ G YSL+TQQPLGGKAQ G Sbjct: 1088 YGKVTLIDGQTGEPFDKPIAVGVMYMLKLSHMVDDKIHARNVGPYSLITQQPLGGKAQNG 1147 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVL 1326 GQRFGEMEVWALEAYGAA+TL+E+LT+KSDD+ GR+K Y+ IV EPG+PESFNVL Sbjct: 1148 GQRFGEMEVWALEAYGAAHTLREILTIKSDDIKGRSKTYEAIVRSKRIPEPGIPESFNVL 1207 Query: 1327 LKEIRSLGINIELEDE 1342 KEI LG N+ + DE Sbjct: 1208 SKEIMGLGFNMYMIDE 1223 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 R+D+ K L +P L+ IQ ++F+ F + G++ FPI S+ G+S L Sbjct: 14 RRDYTKVSMNLSLPNLIGIQTETFEWFKTK------GIQEVLDEFFPILSFDGSSVLTLE 67 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYERE 108 ++ EP V++ + Y AP+ L+L + + E Sbjct: 68 NWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTE 104 >UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP8_TREPR Length = 1290 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1355 (33%), Positives = 688/1355 (50%), Gaps = 115/1355 (8%) Query: 19 PQVLDVPY--LLSIQLDSFQKFIEQD--PEGQ--YGLEAAFRSVFPIQSYSGNSELQYVS 72 P PY LL +Q +F + + P + YGL+ S+FP+ S+ G + ++ V Sbjct: 14 PYAPSSPYPDLLGVQRSAFNRLTQHSTHPSARNPYGLQRLLFSMFPMMSHDGAALIELVK 73 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT--VKDIKEQEVYMGEIPLM 130 Y +G+P EC G+TYSAPL + L+ + + +GT V+ + +VY+G++P+M Sbjct: 74 YTIGKPCSTDAECLRSGLTYSAPLSLTLK-ITSRTPSNDGTWHVRYSRSHQVYLGDMPMM 132 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 T G+F++ GTER ++ +R+ G+ F + + + RI+P+RG+WL+ Sbjct: 133 TRKGSFIVRGTERTLLVLQNRAYGLGFVPYLTYSMYDTPTVCSLRIVPHRGTWLELSIQD 192 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 LF R + +PATI+L+ +T+ I + + I + + + + Sbjct: 193 GAVLF-RFNAGVFMPATILLKGFGASTDAIAGMLTPRAGIAISPGGASIAIDLSDIAFDV 251 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI--DESTGE 308 FD R AR R+L K L P+ VV K + D S G Sbjct: 252 QHFDT-----------RLGHARLTRRLAKSRGSLEGRPLHIEDADVVNKFELASDASLGG 300 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY---ISETLRVDPT---NDRLSA 362 + LS +++ + + N HG Y I+ TLR+D T +D + Sbjct: 301 RTVGSGTLLSQRVISMARADRESYLAVV--NRCHHGAYLRYIARTLRMDRTVDPHDARAC 358 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 + +MR +P +A SLF+ + + Y L+ GR + N + R +G L Sbjct: 359 IAGHIGIMRHLDP---ASAHSLFQGIMENARAYCLTPCGRSQLNARIGRHFSQGGDTLDA 415 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR---VGLVRVERAVKERL 479 DI +K LI+ DD+D + NR+ R + + R +GL R R+ Sbjct: 416 RDIALSLKLLINATRRNVRPDDVDDMSNRKARDACDALCDALRPAFLGLKRRLRSHTANS 475 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 G+ ++ + ++ + +S+L+Q +DQ NPL+E+THKRR++ + Sbjct: 476 RPGEAIAIL----LGLHAVTHQAYDELTNSRLAQPLDQTNPLAEVTHKRRVAIIAGSDSG 531 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RA RDVH THYGR+CP+ETPEG NIGLI SL+ A+ + G + PY Sbjct: 532 PRRAPLGARDVHATHYGRLCPVETPEGQNIGLIASLAARARIDAQGTILAPYVVTRRNAT 591 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 Y+S EE + ++ H + R ++ +V +D + + Sbjct: 592 RAAARYISPQEE----VGAMSAPSAIVPHSRRRTIMARIGHGVAMVHPSEVILVDGANEM 647 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +S + IPFLEH+DA RALMG+NMQRQAVP KP V TGME+AVA + V A+ Sbjct: 648 ALSAATATIPFLEHNDACRALMGSNMQRQAVPCCYPRKPRVHTGMEQAVAQHAMVAIRAR 707 Query: 720 RGGVVQYVDASRI-VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 G V YVD I ++ + E++ G A Y L + R+NQ T + P V G V+ Sbjct: 708 YAGRVAYVDPLHIAIVPICENQ---GHAC--TYRLARNVRTNQGTQADHRPTVIPGSYVQ 762 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 GDV+ADGP+++ G LALG+++ VAFMPW GYN+EDS+ VSE +++ +T++H+ E++ Sbjct: 763 AGDVIADGPASEGGVLALGRDVLVAFMPWEGYNYEDSVAVSEALLRNGAYTSVHLDEVS- 821 Query: 839 VSRDTKLGPEEITAD-IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 V D G + + +P + ++ +LDE GIV +G+ V GDI+VG+++P+ Sbjct: 822 VDMDGDDGCGTVLSRCVPGITQSQRDRLDERGIVRVGSMVYPGDIIVGRISPRHAGIAPK 881 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 LLR +DSS+R G++GTV V++R IE Sbjct: 882 GNSLLRTALATSEQANRDSSIRATQGMTGTV----VYSR-----------IEPCNQPDVH 926 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL---GLTDEEKQNQLEQL 1014 DL + E L RI+ G A RD + + GL +EQ Sbjct: 927 DDLPGQCA-GEQSLLRRIQH-----GARATYCWASARDPYFWMPRNGLA--AAPYAMEQH 978 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 A L H ++K + +KV +A + +QPGDK++GRHGNKG Sbjct: 979 ASPKAGL-HPYDK------------------ATRTLKVAIASRIDLQPGDKVSGRHGNKG 1019 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V+SK+ PIEDMPY +NG VD+++NPLGVPSRMN+GQ+LETH+G+A + L+ Sbjct: 1020 VVSKVVPIEDMPYMKNGRSVDVIVNPLGVPSRMNVGQLLETHIGLA--------SIALEA 1071 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + A+ +D D + + R + P FDG EAE Sbjct: 1072 RSNTAEHLLCSSAYHDAMCHGLMACDGRCYPACSAAGGSPGHRVTLCTLCPAFDGPSEAE 1131 Query: 1195 IKELLKLG---------DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 I+ + + L Q LYDGRTG Q++RPVTVG+MY LKLNHL +K+H+ Sbjct: 1132 IRSMARAAATQGVRFKHGLHRRHQAILYDGRTGTQYDRPVTVGFMYYLKLNHLARNKVHS 1191 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 RSTG YSLVT+QPLGGKA+ GGQR GEMEVWALEA+GAA+TLQEMLT+KSDDV GR +++ Sbjct: 1192 RSTGPYSLVTEQPLGGKARSGGQRVGEMEVWALEAHGAAFTLQEMLTIKSDDVGGRRRVH 1251 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +I + G PES +L++E+RSL +++ E Sbjct: 1252 DHIAQDVRPLSYGTPESIGLLVRELRSLCVDVVAE 1286 >UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 Tax=cellular organisms RepID=RPOB_ANASP Length = 1131 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/611 (55%), Positives = 441/611 (72%), Gaps = 14/611 (2%) Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 L H Y +T+ + AL+E+YR +RPGEPPT + L ++ FF RYDL V Sbjct: 213 LRHPEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQQLLDSRFFDPKRYDLGRV 272 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 GR K N+ L + +L+ DI+ + LI++ G +DDIDHLGNRR+RSVGE+ Sbjct: 273 GRYKLNKKLRLSVPDTVRVLTSGDILAAVDYLINLEYDIGSIDDIDHLGNRRVRSVGELL 332 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 +NQ RVGL R+ER ++ER+++ D + L P ++N KP+ AA+KEFFGSSQLSQFMDQ NP Sbjct: 333 QNQVRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNP 392 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L+E+THKRR+SALGPGGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+ +A+ Sbjct: 393 LAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHAR 452 Query: 581 TNEYGFLETPYRKVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 N+YGFLETP+R V +G V Y++A EE + +A + +DE G+ + V R Sbjct: 453 VNQYGFLETPFRPVENGRVRFDQPAAYMTADEEDDLRVAPGDIPVDENGYIIGPQVPVRY 512 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + E S + +QVDY+ VS Q+VSV S+IPFLEHDDANRALMG+NMQRQAVP L+ ++P Sbjct: 513 RQEFSTTTPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQRQAVPLLKPERP 572 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-----------EDEMYPGEAG 747 LVGTG+E A DSG+ V++ G V YVDA+ I ++V+ ++ + G Sbjct: 573 LVGTGLEAQGARDSGMVIVSRTDGDVVYVDATEIRVRVSGQLPTASGKSTDNGQLTSQKG 632 Query: 748 IDI-YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 +I Y ++KY RSNQ+TC+NQ P V +GE V G VLADG ST+ GELALGQN+ VA+MP Sbjct: 633 QEIRYTVSKYQRSNQDTCLNQKPLVRIGERVVAGQVLADGSSTEGGELALGQNIVVAYMP 692 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 W GYN+ED+IL+SER+VQ+D +T+IHI++ +R TKLGPEEIT +IPNVGE AL +LD Sbjct: 693 WEGYNYEDAILISERLVQDDIYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQLD 752 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 E GI+ IGA V GDILVGKVTPKGE+ PEEKLLRAIFGEKA DV+D+SLRVPNG G Sbjct: 753 EQGIIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKG 812 Query: 927 TVIDVQVFTRD 937 V+DV++FTR+ Sbjct: 813 RVVDVRLFTRE 823 Score = 311 bits (798), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 208/489 (42%), Positives = 279/489 (57%), Gaps = 71/489 (14%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ +V IG V G +L G T GE L + ++ A + + +D+ L Sbjct: 651 LNQKPLVRIGERVVAGQVLADGSSTEGGELALG--QNIVVAYMPWEGYNYEDAIL----- 703 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL---------QILEAGLFSR 974 +S ++ ++T +EK EIE Q K ++++ E+ Q+ E G+ R Sbjct: 704 ISERLVQDDIYTSIHIEK----YEIEARQTKLGPEEITREIPNVGEDALRQLDEQGII-R 758 Query: 975 IRAVLVAGGVEAEKL------DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKK 1028 I A + AG + K+ D+ P ++ L ++ + + L E + + Sbjct: 759 IGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVR 818 Query: 1029 LEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 L + QGD+L PG +V+VY+A KR+IQ GDKMAGRHGNKG+IS+I PIEDMPY Sbjct: 819 LFTRE----QGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPIEDMPYL 874 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 +G+PVDIVLNPLGVPSRMN+GQ+ E LG A +G Sbjct: 875 PDGSPVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLG----------------------- 911 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 VR K+ T DE M E+ R+ I A++ K+ + D P G Sbjct: 912 ------VRFKI---TPFDE--MYGEESSRR---IVHGKLQEARDETGKDWVYNPDDP--G 955 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 +I +YDGRTGE F+RPVT+G YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQ Sbjct: 956 KIMVYDGRTGEAFDRPVTIGVAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQ 1015 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 RFGEMEVWALEA+GAAYTLQE+LTVKSDD+ GR + IV G PG PESF VL++ Sbjct: 1016 RFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMR 1075 Query: 1329 EIRSLGINI 1337 E++SLG++I Sbjct: 1076 ELQSLGLDI 1084 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 132/213 (61%), Gaps = 23/213 (10%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 +P L+ IQ SF+ F+E+ GL S PI Y+G EL ++ +Y+L EP + Sbjct: 27 LPDLIEIQRSSFRWFLEE------GLIEELNSFSPITDYTGKLELHFLGHNYKLKEPKYS 80 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 V+E + R TY+ + V RL+ E DIKEQEV++G++PLMTD GTF+ING Sbjct: 81 VEEAKRRDSTYAVQMYVPTRLLNKE-------TGDIKEQEVFIGDLPLMTDRGTFIINGA 133 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D D ++VRID+ Sbjct: 134 ERVIVNQIVRSPGVYYKSEIDK---NGRRTYSASLIPNRGAWLKFETDRNDLVWVRIDKT 190 Query: 202 RKLPATIILRALNYTTEQILDL-----FFEKVI 229 RKL A ++L+AL + +I D +F+K I Sbjct: 191 RKLSAQVLLKALGLSDNEIFDALRHPEYFQKTI 223 >UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacteria (class) RepID=C7M2W5_ACIFD Length = 1181 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/644 (55%), Positives = 447/644 (69%), Gaps = 41/644 (6%) Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE- 412 D + R AL+E++R +RPGEP EAA FE FF RYDL+ VGR K ++ L E Sbjct: 228 DHSQTRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSAEI 287 Query: 413 ----EIEGSG---------ILSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVG 457 EI G +LS+ DII ++ + G+ DD DH NRR+RSVG Sbjct: 288 ERVEEILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRSVG 347 Query: 458 EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 E+ +NQ ++GL R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFF +SQLSQFMDQ Sbjct: 348 ELIQNQLKIGLSRLERLVRERMTTQDVEAITPQSLINIRPVVAAIKEFFSTSQLSQFMDQ 407 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NNPLS + HKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ Sbjct: 408 NNPLSGLAHKRRLSALGPGGLSRERAGFEVRDVHSSHYGRMCPIETPEGPNIGLIGALAS 467 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 YA+ N YGF+ETPYR+V DG VTDE+ YL+A EE +YVIAQAN+ LD EG FVE V R Sbjct: 468 YARLNRYGFIETPYRRVVDGKVTDEVVYLTADEEEDYVIAQANAKLDAEGRFVEPKVLVR 527 Query: 638 ------------------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 + E L + D+VD MDVS QVVSV SLIPF+EHDDANRA Sbjct: 528 RGPQGAVVRVGAMAVSYGATSEVELATPDEVDLMDVSPAQVVSVSTSLIPFVEHDDANRA 587 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI----K 735 LMGANMQ+QAVP L + P VGTG+E +D+G VA+ GVV V + I + Sbjct: 588 LMGANMQKQAVPLLVPEAPFVGTGVEARAGLDAGDVLVAEGPGVVSEVTGASIAVTYDDS 647 Query: 736 VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELA 795 V +D P G Y LTK+ RSNQNTC NQ P V+ G+ VE GDVLADGP+T GELA Sbjct: 648 VTDDAGRP--LGTRRYWLTKFQRSNQNTCWNQRPTVATGDRVELGDVLADGPATMHGELA 705 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 LG+N+ VAFMPW GYNFED+I++SER+V++D +++HI+E +RDTKLG EEIT DIP Sbjct: 706 LGKNLLVAFMPWEGYNFEDAIIISERLVRDDVLSSLHIEEFETDARDTKLGAEEITRDIP 765 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 N+ E AL+ LDE GIV IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEK+ +V+D Sbjct: 766 NLSEEALADLDERGIVRIGAEVGPGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRD 825 Query: 916 SSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKK 958 +SLRVP+G G VIDV+VFTR D E E+ + + Q +K Sbjct: 826 TSLRVPHGEYGKVIDVKVFTREDATELPPGVNELVRVYVAQHRK 869 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 176/337 (52%), Positives = 218/337 (64%), Gaps = 58/337 (17%) Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 E+ K ++ K +L PGV ++V+VY+A R+IQ GDK+AGRHGNKGVIS+I PIE Sbjct: 834 EYGKVIDVKVFTREDATELPPGVNELVRVYVAQHRKIQVGDKLAGRHGNKGVISRILPIE 893 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP E+GTPVDI+LNPLGVPSRMNIGQ+LE HLG AA+ + I Sbjct: 894 DMPRLEDGTPVDIILNPLGVPSRMNIGQVLEAHLGYAARWGWEPIGE------------- 940 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 GA +K T V A+P FDGA E +E GD Sbjct: 941 --------GAREHRKTRPVTVPARWV-------------ASPAFDGAHWDESEE---AGD 976 Query: 1204 LPT---------------------SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 LPT G+ LY+GRTGE+++ PV VGY+YMLKL H+VDDK Sbjct: 977 LPTIKELLERLNPQSRDGERLVQPDGKAVLYNGRTGERYDNPVMVGYVYMLKLAHMVDDK 1036 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302 +HARSTG YS++TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR Sbjct: 1037 IHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVVGRV 1096 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 K+Y+ IV G++ EPG+PESF VL+KE++SL +N+E+ Sbjct: 1097 KVYEAIVKGDNIPEPGIPESFKVLIKEMQSLCLNVEV 1133 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 29/211 (13%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 R F VL +P L+++Q DSF+ F+ + GL AFR + PI+ YSG L+ + Sbjct: 10 RFSFASARNVLPLPDLIAVQRDSFRWFLNE------GLAEAFRDISPIEDYSGQLALE-L 62 Query: 72 SYRLGEP------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 Y +P F +EC+ + +TY+ P+ V+ R + + +IK+Q V+MG Sbjct: 63 EYDPSDPDLAPVPKFSAEECREKDMTYAGPIFVRARFLNRQ-------TYEIKQQIVFMG 115 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 + PLMTD GTF+INGTERV+VSQL RSPGV F + + + A I PYRG WL+ Sbjct: 116 DFPLMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQ-----HTVVTATINPYRGEWLE 170 Query: 186 FEFDPKD----NLFVRIDRRRKLPATIILRA 212 F+ + + N R+ R+R+L +LRA Sbjct: 171 FDVEARPGRDINAGGRVARKRRLSLFTVLRA 201 >UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Tax=Bacteria RepID=RPOB_DEHSB Length = 1273 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/654 (52%), Positives = 447/654 (68%), Gaps = 64/654 (9%) Query: 341 LDHGP---YISETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYD 396 +D+ P YI ++ DP D +SAL++IY +RPG+PP + A L +FF YD Sbjct: 219 IDNDPERHYIQSSIDRDPLIKDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYD 278 Query: 397 LSAVGRMKFNR--SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 L VGR K NR L E+ + L+++DI+ +++++I + NG+ DDIDHLGNRRIR Sbjct: 279 LGKVGRYKVNRRLELPSREVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIR 338 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 +VGE+ +NQFR+GLVR+ER +ER+S+ +L+ + P ++N +P+ +AVKEFFG SQLSQF Sbjct: 339 TVGELVQNQFRIGLVRLERVARERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQF 398 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 MDQ NPL+EIT+KRR+SA+GPGGL+RERAGF+VRDVH +HYGR+CPIETPEGPNIGLI S Sbjct: 399 MDQTNPLAEITNKRRLSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGS 458 Query: 575 LSVYAQTNEYGFLETPYRKVTDGV------------------------------------ 598 L+ Y++ N YGF+ETPYRKV + Sbjct: 459 LATYSRINRYGFVETPYRKVYSKLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISEDSFK 518 Query: 599 ---------------VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 V+ E+ Y+ A EE Y+IAQAN+ LDE+G+F++D + RS Sbjct: 519 IISKLPECDISVMPFVSAEVKYMPADEEDRYIIAQANTRLDEKGYFLDDRIEARSAERYV 578 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + D++DYMDVS +Q+ SV ASLIPFLEHDDANRALMGANMQRQAVP LRA+ P+V TG Sbjct: 579 VEPPDKIDYMDVSPKQIFSVAASLIPFLEHDDANRALMGANMQRQAVPLLRAEAPMVATG 638 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 MER A SG AK GV V + +I+I+ E G D Y L K+ R+NQ T Sbjct: 639 MEREAARYSGQVIFAKHAGVASSVTSEKIIIRT-------AEGGHDEYLLKKFVRTNQGT 691 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 CINQ ++ G+ + G VLAD +T+ GELALGQN VAFM W G+N+ED+I++SER+V Sbjct: 692 CINQHAIINKGQKIAAGQVLADSSATENGELALGQNCVVAFMSWQGFNYEDAIILSERLV 751 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 +ED FT+IHI + +RDTKLG EEIT DIPNVGE +L +LDE GI+ IGAEV DIL Sbjct: 752 REDAFTSIHITKHELEARDTKLGVEEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDIL 811 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 VGK+TPKGET+L+ EEKLLRAIFGEKA +VKD+SLR+P+G G VI+V++F+RD Sbjct: 812 VGKITPKGETELSAEEKLLRAIFGEKAREVKDTSLRMPHGEWGKVINVRIFSRD 865 Score = 305 bits (781), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 166/335 (49%), Positives = 223/335 (66%), Gaps = 31/335 (9%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GDDL V K V+V++A KR++ GDK+AGRHGNKGVIS I P+EDMPY +GTPVD+VL Sbjct: 867 GDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVL 926 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY--------D 1150 NP+GVPSRMN+GQILETHLG A +G ++ + + + + + R++ D Sbjct: 927 NPIGVPSRMNLGQILETHLGWAGHLLGFRVATPVFDGADDTVIEDALARSWLSAKAGAID 986 Query: 1151 LG-------ADV--------RQKVDLSTFSDEEVMRLAENLR-----KGMPIATPVFDGA 1190 + AD +Q D DE+ LA+ + K M + GA Sbjct: 987 MSPENKRPSADAHKAIEWIKQQGFDGKKIFDEKHPGLAKEVSLKLWLKDMGVDASALSGA 1046 Query: 1191 K-EAEIKELLKLGDLPTS--GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + E + ++ LP+ G+ L DGRTGE F++PVTVG MY+LKL HLV+DK+HAR+ Sbjct: 1047 ELEKKAYDVSSQSRLPSPIVGKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARA 1106 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 TG YSL++QQPLGGKAQFGGQRFGEMEVWA+ AYG A+ LQEMLT+KSDD+ GR K Y++ Sbjct: 1107 TGPYSLISQQPLGGKAQFGGQRFGEMEVWAMYAYGTAHNLQEMLTIKSDDIAGRAKAYES 1166 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 IV G ++PG+PESF VL+KE++SLG+ +E+ +E Sbjct: 1167 IVKGEDVLQPGVPESFKVLVKELQSLGLAVEVINE 1201 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 134/218 (61%), Gaps = 20/218 (9%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS-ELQ 69 IRK + + P+V++VP L+ +QL SF F E+ GL + PI+ + GN EL+ Sbjct: 15 IRKSYAQLPEVVNVPNLIEMQLQSFVWFQEE------GLRELIEEISPIKDFVGNRLELE 68 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ-EVYMGEIP 128 ++ Y EP EC R TYS PL VK RL++ T +IKE +++ G+IP Sbjct: 69 FIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIV-------KTTGEIKEPFDLFFGDIP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFD-SDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 LMT GTF+ +GTERV+VSQL RSPGV+F SD T G+ L + +IP RG+WL+FE Sbjct: 122 LMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPAT---GRPLCHTNLIPSRGAWLEFE 178 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLF 224 +D + V+ID RRK+P + +LRA+ Y+ + IL+LF Sbjct: 179 TSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLF 216 >UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB9_THET1 Length = 1203 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/689 (51%), Positives = 452/689 (65%), Gaps = 93/689 (13%) Query: 347 ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 ++ T+ DPT + ALVE+YR +RPG+PP E A +L L F RYDL+ VGR K Sbjct: 255 LAATIERDPTKNSQEALVELYRRLRPGDPPNPENARTLLRQLLFDPRRYDLARVGRYKLT 314 Query: 407 RSL--LREEIEGSG------------------ILSKDDIIDVMKKLIDIRN----GKGEV 442 R LRE + S ++ D+I+++ LI + N + E Sbjct: 315 RKWEQLREVVARSNGPTFDFEIDSRVYGERLRTITGRDLINIVGNLIRLNNLPPGSEEEG 374 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAV 502 DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +KER+S+ D ++ P ++IN +P+ AA+ Sbjct: 375 DDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIKERMSIQDAESATPNNLINIRPVVAAM 434 Query: 503 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 +EFFG SQLSQFMDQ N LSEI HKRR+SALGPGGL+R+RAG +VRDVHP+HYGR+CPIE Sbjct: 435 REFFGGSQLSQFMDQVNALSEINHKRRLSALGPGGLSRDRAGLDVRDVHPSHYGRICPIE 494 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV------------------------ 598 TPEGPNIGLI L+ YA+ NEYGF+ETPYRKV V Sbjct: 495 TPEGPNIGLIGQLATYARINEYGFIETPYRKVVKSVPGDSIDAMVGHITREPIMDSNGQE 554 Query: 599 -----------------------------VTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 V +E+ YLSA E + +AQANS LDE G+F Sbjct: 555 VVPVGTEITREVAEKIVALGLDEIKVKPRVLNEVEYLSADREDLFTVAQANSPLDERGYF 614 Query: 630 VEDLVTCRSK-------GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 +ED V R+ E + D+VDY+D S +QVVSV +SLIPFLEHDDANRALMG Sbjct: 615 LEDRVEARASIRLRRGGTEFMIVPVDEVDYVDASPKQVVSVASSLIPFLEHDDANRALMG 674 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 ANMQRQAVP L D P+VGTG+E VA DSG +AK G+V+ V A RIV V ED+ Sbjct: 675 ANMQRQAVPLLVPDSPVVGTGVEAQVARDSGQVVIAKADGIVRSVTAERIV--VEEDD-- 730 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + Y L K+ R+NQ+T +NQ P V+ G+ + G ++AD ST GE+ALGQN+ V Sbjct: 731 ---GNLRTYELEKFVRTNQDTLLNQRPIVNKGDRIYAGQIIADSASTSNGEIALGQNVLV 787 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 AFMPW G NFED++L+SER+V++D +T+IHI++ +RDTKLGPEEIT DIPNVGE AL Sbjct: 788 AFMPWEGGNFEDAVLISERLVRDDVYTSIHIEKYEVEARDTKLGPEEITRDIPNVGEEAL 847 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 + LDE GIVY+GAEV DILVGKVTPKGET++T EE+LLRAIF EKA DV+D+SLRVPN Sbjct: 848 ANLDERGIVYVGAEVKPNDILVGKVTPKGETEMTAEERLLRAIFSEKARDVRDTSLRVPN 907 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 GV G VIDV+VFTR VE D + +M Sbjct: 908 GVHGQVIDVKVFTR--VENDDLPAGVNQM 934 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 152/306 (49%), Positives = 190/306 (62%), Gaps = 54/306 (17%) Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + DDL GV ++V+V +A KR+I GDK+AGRHGNKGVIS+I PIE D+ Sbjct: 922 VENDDLPAGVNQMVRVMIAQKRKISEGDKVAGRHGNKGVISRILPIE-----------DM 970 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 P G P + + I G+ ++N L + ++ A Sbjct: 971 PFLPDGRPVDVILNPI----------GVPSRMN-----------LGQILECHLGWAA--- 1006 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 ST G +A PVFDGA E IKE L+ LP G+I LYDGR Sbjct: 1007 -----STL--------------GFKVACPVFDGASEEMIKEELRRAGLPEDGKIELYDGR 1047 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TGE+F++PV VG MY++KL HLV+DK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVW Sbjct: 1048 TGEKFDQPVAVGVMYIMKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1107 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 ALEAYGAAYTLQEMLTVKSDD GR + Y+ IV G G+PESF VL+KE++SLG++ Sbjct: 1108 ALEAYGAAYTLQEMLTVKSDDTVGRVRTYEAIVKGEPISGAGVPESFKVLMKELQSLGLS 1167 Query: 1337 IELEDE 1342 +E+ +E Sbjct: 1168 VEVLNE 1173 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 92/216 (42%), Positives = 138/216 (63%), Gaps = 20/216 (9%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN-SELQY 70 RK + + P +++P L+ IQLDSF F E+ GL+ F + P+ ++G EL++ Sbjct: 23 RKSYARIPDTIEMPNLIQIQLDSFNWFKEE------GLQELFDEINPVVDFTGRLMELRF 76 Query: 71 ----VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 GEP + +EC+ R TYSAPL+VK L++ E +IKEQE+++G+ Sbjct: 77 DKPDSGQFFGEPRYTEKECRERDFTYSAPLKVKATLLVKE-------TGEIKEQEIFLGD 129 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 PLMT+ GTFVING ERV+VSQL RSPGV+F +SGK L+ A++IP RG+WL+F Sbjct: 130 FPLMTEKGTFVINGAERVVVSQLVRSPGVYFKD--VFDEASGKTLWTAKLIPNRGAWLEF 187 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD 222 E KD L+V++DR+RK+P T++LRA+ ++++ Sbjct: 188 ETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVE 223 >UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNB1_9SYNE Length = 1150 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/601 (54%), Positives = 437/601 (72%), Gaps = 9/601 (1%) Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + L H Y +T+ + AL+E+YR +RPGEPPT + L E+ FF RYDL Sbjct: 218 DSLRHPEYFQKTIEKEGQFSEEEALLELYRKLRPGEPPTVNGGQQLLESRFFDPKRYDLG 277 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 VGR K NR L E + +L+ DI+ + LI++ G DDIDHLGNRR+RSVGE Sbjct: 278 KVGRHKLNRKLRLNIPESTRVLTPQDIVSAIDYLINLEFDIGNPDDIDHLGNRRVRSVGE 337 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQ RVGL R+ER ++ER+++ D D+L P ++N KP+ AA+KEFFGSSQLSQFMDQ Sbjct: 338 LLQNQVRVGLNRLERIIRERMTVSDADSLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQT 397 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+E+THKRRISALGPGGLTRERAGF VRD+HP+H+GR+CPIETPEGPN GLI SL+ + Sbjct: 398 NPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICPIETPEGPNAGLIGSLATH 457 Query: 579 AQTNEYGFLETPYRKVTDG-VVTDEIH-YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 A+ N++GF+ETP+ V +G +V D+ Y++A EE + +A + +D + + + + V Sbjct: 458 ARVNDFGFIETPFFPVVNGQIVKDKPAVYMTADEEDDLRVAPGDVPIDSDNNILGESVPV 517 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + + ++ S +VDY+ VS Q++SV SLIPFLEHDDANRALMG+NMQRQAVP LR + Sbjct: 518 RYRQDFTVTSPKEVDYVAVSPVQIISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPE 577 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 + LVGTG+E A DSG+ +++ GVV YVDA+ I + E +++ Y L KY Sbjct: 578 RALVGTGLEAQAARDSGMVTISRTDGVVSYVDANWIKVTDLEGQVHS-------YELQKY 630 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQ+TC+NQ P V G V G V+ADG +T+ GE+ALGQN+ + +MPW GYN+ED+I Sbjct: 631 QRSNQDTCLNQRPFVFEGTKVVAGQVMADGSATEGGEIALGQNVLITYMPWEGYNYEDAI 690 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 L+SER+V ED +T+IHI++ +R TKLGPEEIT +IPNVGE AL +LDE+GI+ +GA Sbjct: 691 LLSERLVYEDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRQLDETGIIRVGAW 750 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V+ GDILVGKVTPKGE+ PEEKLLRAIFGEKA DV+D+SLRVPNG G V+DV+VFTR Sbjct: 751 VSSGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRVFTR 810 Query: 937 D 937 + Sbjct: 811 E 811 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 200/489 (40%), Positives = 275/489 (56%), Gaps = 71/489 (14%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ V+ G +V G ++ G T GE L + +L + + +D+ L Sbjct: 639 LNQRPFVFEGTKVVAGQVMADGSATEGGEIALG--QNVLITYMPWEGYNYEDAIL----- 691 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL---------QILEAGLFSR 974 +S ++ V+T +EK EIE Q K ++++ E+ Q+ E G+ R Sbjct: 692 LSERLVYEDVYTSIHIEK----FEIEARQTKLGPEEITREIPNVGEDALRQLDETGII-R 746 Query: 975 IRAVLVAGGVEAEKL------DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKK 1028 + A + +G + K+ D+ P ++ L ++ + + L E + + Sbjct: 747 VGAWVSSGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVR 806 Query: 1029 LEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 + + QGD+L PG +V+VY+A KR+IQ GDKMAGRHGNKG+IS+I P+EDMPY Sbjct: 807 VFTRE----QGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPYL 862 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 +GTP+DIVLNPLGVPSRMN+GQ+ E LG A G ++A K V E Sbjct: 863 PDGTPIDIVLNPLGVPSRMNVGQVFEALLGWA----GQNLDARFK----VTPFDEMYG-- 912 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 ++ L T +L E A+ K+ + D P G Sbjct: 913 --------EEASLETTHG----KLQE---------------ARNQTGKDWVFNPDNP--G 943 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 +I+LYDGRTGE F++ VTVG YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQ Sbjct: 944 KIQLYDGRTGEPFDQEVTVGQSYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQ 1003 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 RFGEMEVWALEA+GAAYTLQE+LTVKSDD+ GR + IV G PG PESF VL++ Sbjct: 1004 RFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMR 1063 Query: 1329 EIRSLGINI 1337 E++SL ++I Sbjct: 1064 ELQSLCLDI 1072 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 126/213 (59%), Gaps = 23/213 (10%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P L+ IQ SF+ F+ + GL S PI Y+G EL ++ YRL P + Sbjct: 34 LPDLVEIQRASFRWFLGE------GLVEELESFSPITDYTGKLELHFLGKDYRLKAPKYM 87 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 V E + R TYS + V RL+ E DIKEQEV++G++PLMTD GTF+ING Sbjct: 88 VDEAKRRDSTYSVQMYVPTRLINKE-------TGDIKEQEVFIGDLPLMTDRGTFIINGA 140 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERVIV+Q+ RSPGV++ K +T G+ Y A +IP RG+WL FE D D ++VRID+ Sbjct: 141 ERVIVNQIVRSPGVYY---KAETDKHGRRTYTANLIPNRGAWLKFETDKNDLVWVRIDKT 197 Query: 202 RKLPATIILRALNYTTEQILDL-----FFEKVI 229 RKL A ++L+AL + +I D +F+K I Sbjct: 198 RKLSAQVLLKALGLSDGEIFDSLRHPEYFQKTI 230 >UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 Tax=Bacteria RepID=RPOB_BIFLD Length = 1187 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/614 (53%), Positives = 440/614 (71%), Gaps = 23/614 (3%) Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 P + + L + + ALV++YR +RP + PT EA ++L ++ +F+ RYDL+ VGR K Sbjct: 252 PLVLDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRYK 311 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG--------KGEVDDID-------HLG 449 NR L E L ++DII +K L+ + +G GE D+ H G Sbjct: 312 INRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDLRVDVDDIDHFG 371 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS 509 NRRIR VGE+ +NQ R GL R+ER V+ER++ D + + PQ +IN +P++A +KEFFG+S Sbjct: 372 NRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVNATIKEFFGTS 431 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 QLSQFMDQNNPLS +T+KRR+SALGPGGL+R+RA EVRDVHP+H+GR+CPIE+PEGPNI Sbjct: 432 QLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMCPIESPEGPNI 491 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 GLI SL+ + + N +GF+ETPYRKV +G VTDE+ Y++A + ++VIAQAN LDE G+F Sbjct: 492 GLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQANQELDENGNF 551 Query: 630 VEDLVTCRSKGESSL-FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 V+ R E ++ VDYMDVS +Q+VS+GASLIPFLEHD+ +RALMG NMQRQ Sbjct: 552 VQKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGHRALMGTNMQRQ 611 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 AVP + +++PLVGTG E A DSG +++ GVV YV A I + +N+D Sbjct: 612 AVPLIESERPLVGTGSEWRAANDSGDVIKSEKDGVVTYVSADLIRV-MNDD------GTT 664 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 Y L K+ RSNQ TC NQ P V GE VE G V+ADGP+ G+LALG+N+ +AFMPWN Sbjct: 665 SSYKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVMADGPAIQNGDLALGKNLLIAFMPWN 724 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 GYN+ED++++S+R+VQ+D ++IHI+E +R+TKLG EEIT D+PNVGE A++ LDE Sbjct: 725 GYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANLDER 784 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 GI+ IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEK+ +V+D+SLRVP+G +GTV Sbjct: 785 GIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGTV 844 Query: 929 IDVQVFTRDGVEKD 942 I V+ TR+ E+D Sbjct: 845 IGVKEITREDAEED 858 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 165/309 (53%), Positives = 209/309 (67%), Gaps = 36/309 (11%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L GV ++++VY+A R+I GDK++GRHGNKG IS+I P EDMP+ +GTPVDI+L Sbjct: 859 GDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRILPEEDMPFLADGTPVDIML 918 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN+GQ+LE HLG A G D+ Sbjct: 919 NPLGVPSRMNLGQVLELHLGWIAHS----------------------------GWDISLD 950 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL------GD--LPTSGQI 1210 +L + + AE P+ATPVFDG K +K LL GD + G+ Sbjct: 951 PNLEAEWKKLIPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKA 1010 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 L+DGRTGE + +P++VGYMYMLKL+HLVDDK+HARSTG YS++TQQPLGGKAQFGGQRF Sbjct: 1011 TLFDGRTGEPYTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRF 1070 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEMEVWALEAYGAAYTL EM+T KSDDV+GR ++Y IV G++ G+PESF VLLKE+ Sbjct: 1071 GEMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEM 1130 Query: 1331 RSLGINIEL 1339 +SL +N+E+ Sbjct: 1131 QSLSLNVEV 1139 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 129/234 (55%), Gaps = 25/234 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI---------EQDPEG-------QYGLE 50 K R +FG + +DVPYLL +Q DSF I E+D + GL+ Sbjct: 24 HKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNERWKARVEEDEKNGTNTVAHTSGLD 83 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAP 110 F + PI++++ L + EP VQEC+ + TYSAPL V E Sbjct: 84 EVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEKDYTYSAPLYVNA-------EFE 136 Query: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 G +IK Q V+MG+ PL T +GTF+I GTERVIVSQL RSPGV+FD + +T S K Sbjct: 137 NGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDRT--SDKE 194 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 ++ A+IIP RG+WL+FE D KD VR+DR+RK A + L A+ T +I F Sbjct: 195 VFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEIAQAF 248 >UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=Veillonella RepID=A3FMP8_9FIRM Length = 1124 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/531 (60%), Positives = 402/531 (75%), Gaps = 19/531 (3%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++++D+I + L+++ +G G DDIDHLGNRR+R VGE+ +NQFR+GL R+ER V+ER+ Sbjct: 248 VTREDMIANISYLLNLMDGVGHTDDIDHLGNRRLRCVGELLQNQFRIGLTRMERVVRERM 307 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 ++ + D + PQ +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+THKRR+SALGPGGL+ Sbjct: 308 TVQESDMITPQALINIRPVVAAVKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLS 367 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV----- 594 RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSLS YA+ NE+GF+E PYRKV Sbjct: 368 RERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNYAKVNEFGFIEAPYRKVEKIYG 427 Query: 595 ----TDGV----VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 D + VTD + Y++A EE VIAQANS LDEEG FV D + CRS + + Sbjct: 428 TGDEADKIVKVRVTDTVAYMTADEEEGMVIAQANSVLDEEGCFVSDHIACRSGHDVLEVT 487 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 D+VDYMDVS ++VVS+G ++IPFLE+DDANRALMGANMQRQAVP LRA PLVGTGME Sbjct: 488 PDKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANMQRQAVPLLRAQAPLVGTGMEY 547 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 A DSGV +AK G V +I + M +D+Y + K+ RSNQ+TC N Sbjct: 548 TAATDSGVCILAKAAGTVVRCWGDQIHV------MRDDNGRVDVYKMNKFLRSNQSTCFN 601 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P V G+ V G VLADGP+TD GELALG N+ VAFMPW GYN+ED+IL+SE + +ED Sbjct: 602 QKPIVHRGDHVVAGQVLADGPATDGGELALGFNILVAFMPWEGYNYEDAILLSEDLCKED 661 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 +T+IHI+E C +RDTKLG EEIT ++PN G+ +L LD GI+ IGAEV GDILVGK Sbjct: 662 IYTSIHIEEYECDARDTKLGAEEITRELPNTGDDSLKNLDADGIICIGAEVKPGDILVGK 721 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 TPKGET+LTPEE+LLRAIFG+K +V+D+SLRVP+G SG ++DV+VFTR+ Sbjct: 722 ATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGESGKIVDVKVFTRE 772 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/144 (54%), Positives = 100/144 (69%), Gaps = 1/144 (0%) Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 L + Q ++ E I A + +++R+ ++ + D E + + G+ IATPVFDGA Sbjct: 982 LGRLQSTVRILETIDEAREKRSEIRKSLEAIGY-DYEQYGMPKPDVAGIHIATPVFDGAS 1040 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 E ++ E L+L G+ LYDGRTGE + VTVGY+YMLKL+HLVDDK+HARSTG Y Sbjct: 1041 EVDVFEALQLAGKSEDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLVDDKIHARSTGPY 1100 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEV 1275 SLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1101 SLVTQQPLGGKAQFGGQRFGEMEV 1124 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/214 (41%), Positives = 124/214 (57%), Gaps = 19/214 (8%) Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 +LV + + P +R L D+E++ + L + E K ++ K Sbjct: 717 ILVGKATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGESG----KIVDVKVFTRE 772 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+L PGV K+V+VY+A KR+I GDKMAGRHGNKGV+S++ EDMP+ +GTPV IV Sbjct: 773 NGDELQPGVNKLVRVYIAQKRKIHEGDKMAGRHGNKGVVSRVMRREDMPFLPDGTPVQIV 832 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKI---NAMLKQQQEVAK-----------LRE 1143 LNPLGVPSRMNIGQ+LETHLG A +G+G KI + +KQ E AK L+ Sbjct: 833 LNPLGVPSRMNIGQVLETHLGFAVQGLGMKIKDTDMQIKQVLERAKTDASYWDNIEELKG 892 Query: 1144 FIQRAYDLGADVRQKVDLSTFS-DEEVMRLAENL 1176 R +L A + Q V ++ DEE+ +L ++ Sbjct: 893 LYARLDELKAQIAQDVTVAHLDVDEEITQLTNDI 926 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 4/95 (4%) Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 D GTF+ING ERVIVSQL RSPGV++D + + G LY + +IP RG+W++ E D Sbjct: 1 DTGTFIINGAERVIVSQLVRSPGVYYDKE---IDTMGNRLYASTVIPNRGAWIELETDAN 57 Query: 192 DNLFVRIDRRRKLPATIILRALNY-TTEQILDLFF 225 + + VRIDR RK+PATI++RAL + T E IL+LF+ Sbjct: 58 EVVSVRIDRNRKIPATILVRALGWDTNESILELFW 92 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/96 (45%), Positives = 54/96 (56%), Gaps = 7/96 (7%) Query: 321 LLAKLSQSGHKRIETLFTN---DLDHGPYISE----TLRVDPTNDRLSALVEIYRMMRPG 373 L+ L ++ I LF N D D P E TL D T ALVEIY+ +RPG Sbjct: 75 LVRALGWDTNESILELFWNGQVDEDGNPIYDERLLRTLEKDTTESSEEALVEIYKKLRPG 134 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 EPPT E+A +LF+NLFF RYD + VGR K N+ L Sbjct: 135 EPPTVESARNLFDNLFFDPRRYDFARVGRYKVNKKL 170 >UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 Tax=Bacteria RepID=RPOB_BACP2 Length = 1196 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/521 (59%), Positives = 408/521 (78%), Gaps = 3/521 (0%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DII + ++ +G G+ DDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ER+ Sbjct: 379 ITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERM 438 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGLT Sbjct: 439 SIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLT 498 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT--DG 597 RERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS +A+ N +GF+ETPYR+V G Sbjct: 499 RERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDPETG 558 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VT I YL+A EE NYV+AQAN+ L ++G F++D + R +GE+++ R++VDYMDVS Sbjct: 559 KVTPRIDYLTADEEDNYVVAQANALLADDGSFIDDNIIARFRGENTVVPRNRVDYMDVSP 618 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +QVVS + IPFLE+DD+NRALMGANMQRQAVP ++ + P+VGTGME DSG + Sbjct: 619 KQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGTGMEYVSGKDSGAAVI 678 Query: 718 AKRGGVVQYVDASRIVIKVNED-EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 + GVV+ V+A I ++ ED + + +D Y+L K+ RSNQ TC NQ P VS+G+ Sbjct: 679 CRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDE 738 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 V +G++LADGPS + GELALG+N+ V FM W+GYN+ED+I++SER+V++D +T+IHI+E Sbjct: 739 VVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEY 798 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GD+LVGKVTPKG T+LT Sbjct: 799 ESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDLLVGKVTPKGVTELT 858 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 EE+LL AIFGEKA +V+D+SLRVP+G G + DV+VF R+ Sbjct: 859 AEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNRE 899 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/301 (54%), Positives = 202/301 (67%), Gaps = 54/301 (17%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV ++V+VY+ KR+I GDKMAGRHGNKGVISKI P EDMPY +GTP+DI+L Sbjct: 901 GDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIML 960 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQ+LE H+GMAA+ +G I + + +D GA Sbjct: 961 NPLGVPSRMNIGQVLELHMGMAARYLGIHIASPV----------------FD-GA----- 998 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 +E+V E T ++DG RTG Sbjct: 999 ------REEDVWETLEEAGMSRDAKTVLYDG--------------------------RTG 1026 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F+ V+VG MYM+KL H+VDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 1027 EPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1086 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE+LTVKSDDV GR K Y+ IV G++ EPG+PESF VL+KE++SLG++++ Sbjct: 1087 EAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVK 1146 Query: 1339 L 1339 + Sbjct: 1147 I 1147 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 102/220 (46%), Positives = 150/220 (68%), Gaps = 17/220 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 13 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 66 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 67 LEFIDYSLGDPKYPVAESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 119 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F GK +GK + A +IP RG+WL++E Sbjct: 120 PIMTDTGTFIINGAERVIVSQLVRSPSVYF---SGKVDKNGKKGFTATVIPNRGAWLEYE 176 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFE 226 D KD ++VRIDR RKLP T++LRAL ++++Q ILDL E Sbjct: 177 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEILDLIGE 216 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 Y+ TL D T + AL+EIY +RPGEPPT E A+SL ++ FF RYDL+ VGR K Sbjct: 219 YLRNTLEKDNTENADKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKI 278 Query: 406 NRSL 409 N+ L Sbjct: 279 NKKL 282 >UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY37_9BACL Length = 1267 Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust. Identities = 308/528 (58%), Positives = 403/528 (76%), Gaps = 11/528 (2%) Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPIS 499 G VDDIDHLGNRR+R +GE+ +NQ RVG+ R+ER V+ER+S+ D + + PQ +IN +P++ Sbjct: 418 GRVDDIDHLGNRRLRCIGELLQNQIRVGISRMERVVRERMSIQDTNEITPQQLINVRPVT 477 Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 A +KEFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAG EVRDVH +HYGR+C Sbjct: 478 AIIKEFFGSSQLSQFMDQVNPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMC 537 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT-DG----VVTDEIHYLSAIEEGNY 614 PIETPEGPNIGLINSLS +A+ NE+GF+ TPYRKV DG VT+ + YL+A +E Y Sbjct: 538 PIETPEGPNIGLINSLSSFARINEFGFIMTPYRKVEFDGEGRPYVTENVQYLTADQEDKY 597 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 V+AQ+ +N+DE+G+FV++ V CR +G++++ R+ +++MDVS +QVVS + IPFLE+D Sbjct: 598 VVAQSTANVDEKGYFVDEEVVCRFRGDNTVKPREMMNFMDVSPKQVVSAATACIPFLEND 657 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 D+NRALMGANMQRQAVP + + P VGTGME A DSG +AK G+V+YVD ++ I Sbjct: 658 DSNRALMGANMQRQAVPLMITEAPFVGTGMEHLAARDSGAAVIAKYPGIVEYVDGAK--I 715 Query: 735 KVNEDEMYPG---EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 KV E G + +D Y + K+ RSN +T NQ P V +G+ VE D+LADGPS D Sbjct: 716 KVRRIETLEGKEIKGDLDTYVIHKFVRSNHSTAYNQKPIVKVGDRVEPKDILADGPSMDK 775 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 GELALG+N+ VAF+ W+GYN+ED++++SER+V++D +T+IH++E +RDTKLGPEEIT Sbjct: 776 GELALGKNLVVAFVNWDGYNYEDAVIMSERLVKDDVYTSIHVEEYETDARDTKLGPEEIT 835 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 +IPNVGE AL LD GI+ IGAEV GDILVGKVTPKG T+ TPEEKLL AIFG K+ Sbjct: 836 REIPNVGENALRNLDARGIIRIGAEVKDGDILVGKVTPKGLTEQTPEEKLLYAIFGAKSK 895 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKK 958 +V+D+SLRVP+G G V DV++F R DG E E+ + + Q +K Sbjct: 896 EVRDTSLRVPHGADGVVADVKIFKREDGAELPNGVNELVRVFIVQKRK 943 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 158/303 (52%), Positives = 195/303 (64%), Gaps = 54/303 (17%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G +L GV ++V+V++ KR+I+ GDKMAGRHGNKGVIS I P EDMPY +GTPVD++L Sbjct: 923 GAELPNGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPYLPDGTPVDVML 982 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQ+LE H LG +Q Sbjct: 983 NPLGVPSRMNIGQVLELH----------------------------------LGMAAKQL 1008 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 G+ +ATPVFDGA + ++ + + + LYDGRTG Sbjct: 1009 --------------------GIHVATPVFDGATDEDVWSTVAEAGMAKDAKTVLYDGRTG 1048 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F+ V+VG MYM+KL H+VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 1049 EPFDSRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1108 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE+LT KSDD NGR K Y+ IV G + PG+PESF VL+KE+++LG++ Sbjct: 1109 EAYGAAYTLQEILTYKSDDTNGRVKTYEAIVKGENIPRPGVPESFRVLMKELQALGMDFR 1168 Query: 1339 LED 1341 + D Sbjct: 1169 VMD 1171 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 100/220 (45%), Positives = 141/220 (64%), Gaps = 14/220 (6%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R R+ + + +V+D+P L+ IQ S+ KF+E GL+ F+ V PI+ + Sbjct: 8 KHRQRRSYARISEVIDLPDLIEIQTLSYDKFLET------GLKDVFKDVSPIEGNNDKLS 61 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y+LG P +DV E + R TYSAPLRV++RL+ ER+ +IKEQEV+MGE+ Sbjct: 62 LEFIDYKLGTPKYDVDESKERDATYSAPLRVRVRLINKERD-------EIKEQEVFMGEL 114 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT+ GTF+ING ERVIVSQL RSP V+F D + Y +IP RG+WL+FE Sbjct: 115 PLMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVKNIPNAYKTTVIPNRGAWLEFE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFE 226 D K ++ RIDR RK+P T ++RAL + + E I+ LF E Sbjct: 175 KDIKGLVYARIDRTRKIPLTTLIRALGFESDESIIKLFGE 214 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 15/186 (8%) Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 EI++ ++ M +P L ET +F I +V V + R + + E D +K+ +P Sbjct: 103 EIKEQEVFMGELP--LMTETGTFIINGAERVIVSQLVRSPSVYF--TEDDKLKVKNIPNA 158 Query: 291 Y----IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET---LFTNDLDH 343 Y I + ++ + G + + + L + G + E+ LF D + Sbjct: 159 YKTTVIPNRGAWLEFEKDIKGLVYARIDRTRKIPLTTLIRALGFESDESIIKLFGEDTE- 217 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + TL D D +AL IY +RPGEP E A++ FF RYDL+ VGR Sbjct: 218 ---LLNTLEKDENLDTGTALKVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVGRY 274 Query: 404 KFNRSL 409 K N L Sbjct: 275 KLNNKL 280 >UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular organisms RepID=B2IM40_STRPS Length = 824 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 307/519 (59%), Positives = 396/519 (76%), Gaps = 9/519 (1%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DI+ M +++ G G VDDIDHLGNRRIR+VGE+ NQ R+GL R+ER V+ER+ Sbjct: 1 MTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM 60 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 S+ D + L PQ +IN +P++AAVKEFFGSSQLSQFMDQ+NPLSE++HKRR+SALGPGGLT Sbjct: 61 SVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLT 120 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT--DG 597 R+RAG+EVRDVH THYGR+CPIETPEGPNIGLIN+LS Y N+YGF++TPYRKV G Sbjct: 121 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETG 180 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VVT+EI +L+A EE Y +AQANS L+E+G F E +V R +G + + + VDYMDVS Sbjct: 181 VVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQGVNQEYPANIVDYMDVSP 240 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +QVV+V + IPFLE+DD+NRALMGANMQRQAVP + P VGTGME A DSG + Sbjct: 241 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPYVGTGMEYQAAHDSGAAVI 300 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+ G V Y DA ++ ++ ED +D+Y++ K+ RSN T NQ V +G+ V Sbjct: 301 AQYDGKVTYADADKVEVR-RED------GSLDVYHIQKFRRSNSGTAYNQRTLVKVGDVV 353 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+GD +ADGPS + GE+ALGQN VA+M W GYNFED++++SER+V++D +T++H++E Sbjct: 354 EKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYE 413 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 +RDTKLGPEEIT +IPNVGE AL LDE GI+ IGAEV GDILVGKVTPKGE L+ Sbjct: 414 SETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSA 473 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 EE+LL AIFG+K+ +V+D+SLRVP+G G V DV++FTR Sbjct: 474 EERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTR 512 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 140/305 (45%), Positives = 185/305 (60%), Gaps = 54/305 (17%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+L GV +V+VY+A KR+I+ GDKMAGRHGNKGV+S+I P+E D+ Sbjct: 514 NGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVE-----------DMP 562 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 P G P + + + G+ ++N + ++ E LG R Sbjct: 563 YLPDGTPVDIMLNPL----------GVPSRMN--------IGQVMEL-----HLGMAART 599 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 G+ IATPVFDGA ++ +K + + + LYDGRT Sbjct: 600 L--------------------GIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRT 639 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 GE F+ V+VG MYM+KL+H+VDDK+HARS G YS VTQQPLGGKAQFGGQRFGEMEVWA Sbjct: 640 GEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWA 699 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 LEAYGA+ LQE+LT KSDD+NGR K Y+ I G +PG+PESF VL+KE++SLG+++ Sbjct: 700 LEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDM 759 Query: 1338 ELEDE 1342 + DE Sbjct: 760 RVLDE 764 >UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax=Deinococcus RepID=RPOB_DEIGD Length = 1152 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 317/603 (52%), Positives = 418/603 (69%), Gaps = 31/603 (5%) Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN---------RSLLRE 412 AL+ ++ ++RPG+PP R+ A L RYDL GR K N R+LL Sbjct: 241 ALLRLFTVLRPGDPPKRDKAIQYLYGLLADPKRYDLGEPGRFKMNTKLGTRRQDRTLLTF 300 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEV-----------------DDIDHLGNRRIRS 455 E G ++D ++ L+ ++ G V DDIDHLGNRR+R+ Sbjct: 301 E---DGRFGDAGLVDTIRYLMALQQGLETVTMGADEDGVAIEVPVTEDDIDHLGNRRVRT 357 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VGE+ +Q RVG+ R+ R V+ER+ LG+ D P ++N +PI AA++EFFG SQLSQF Sbjct: 358 VGELLADQLRVGMGRMARGVRERMLLGNPDAATPTKLVNNRPIVAAMREFFGRSQLSQFK 417 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPLS++ HKRRISALGPGGLTRERAGF+VRDVH THYGR+CPIETPEG NIGLI+SL Sbjct: 418 DQTNPLSDLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPIETPEGANIGLISSL 477 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 S YA+ N+ GF+E PYR+V DG VTD++ Y++A E YVIAQANS L+ +G F E+ V Sbjct: 478 SSYAKVNDLGFIEAPYRRVVDGRVTDDVVYMTADIEDRYVIAQANSPLNPDGTFAEERVL 537 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 R KG+ L++ +VD+MDVS +Q+VS+ SLIPFLEHDDANRALMG+NMQ QAVP +RA Sbjct: 538 ARKKGDPMLYAPTEVDFMDVSPKQIVSINTSLIPFLEHDDANRALMGSNMQSQAVPLVRA 597 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG--EAGIDIYNL 753 D P VGTG+E V DSG + ++ G V YVDA I + + ED G + + + L Sbjct: 598 DSPAVGTGVEERVVTDSGTSVISDVTGRVTYVDARAIQVTLTEDAPQIGLVKGNVRTFEL 657 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 ++TRSNQ T ++Q P VS+G+ V G V+ADGP++D G LALGQN+ +A MP++G+NFE Sbjct: 658 VRFTRSNQGTNLDQHPIVSVGDEVVPGQVIADGPASDQGRLALGQNITIAIMPFDGFNFE 717 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 D+I +SE +V++D +T++HI++ +RDTKLGPE+IT DIP + EAAL LDE GIV + Sbjct: 718 DAICISEGLVRKDFYTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAALRDLDEDGIVRV 777 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GAEV GDILVGK + KGE++ TPEE+LLR+IFGEKA +VKD+SLRV +G G V+ Sbjct: 778 GAEVKPGDILVGKTSFKGESEPTPEERLLRSIFGEKAREVKDTSLRVQSGQGGIVVKTVR 837 Query: 934 FTR 936 F R Sbjct: 838 FRR 840 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 173/317 (54%), Positives = 223/317 (70%), Gaps = 28/317 (8%) Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 R+ +G DL PGV ++V+VY+A KR++Q GDK+A RHGNKGV+SKI P EDMPY E+GTP Sbjct: 839 RRGDEGVDLKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGVVSKILPPEDMPYLEDGTP 898 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI---------NAMLKQQQEVAKLREF 1144 VD+V NPLGVPSRMN+GQILETHLG A+ G K +K+ EVA E Sbjct: 899 VDLVFNPLGVPSRMNLGQILETHLGEVARLTGQKFVTPVFDSATEEAIKEMLEVAAA-ER 957 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 +QR D G ++ ++ ++EV+ A L G+ I+ P D A A+++ L Sbjct: 958 LQRRKDEGFELDKR-------EQEVLDRAGKL--GV-ISPPNGDYAA-AQMQ-------L 999 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 +G+ LYDGRTGE PV VG MY++KL H+V+DK+HARSTG YSL+TQQPLGGKAQ Sbjct: 1000 ARTGKSVLYDGRTGEPISGPVVVGTMYVMKLYHMVEDKLHARSTGPYSLITQQPLGGKAQ 1059 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 FGGQRFGEMEVWALEAYGAA+TLQEMLT+KSDD++GR Y++IV G +PESF Sbjct: 1060 FGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIDGRDAAYQSIVKGEEVSGSTIPESFK 1119 Query: 1325 VLLKEIRSLGINIELED 1341 VL+KE+ SLG+++E+ D Sbjct: 1120 VLVKELHSLGLDVEVLD 1136 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 149/233 (63%), Gaps = 23/233 (9%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD--PEGQ--YGLEAAFRSVFPI 59 S T++K + FG+ +V+ +P L +Q++SF+ F++ D P+ + GL++AFR VFPI Sbjct: 2 SLTDQKPRIERFGEITEVIPLPNLTEVQVNSFKAFLQADKAPDERDDTGLQSAFREVFPI 61 Query: 60 -QSYSGNSE---LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 ++ G S L ++ YRLGEP + +EC+ + +TY APL KL+L+ + Sbjct: 62 DETEKGRSTGLVLDFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKDSGL------ 115 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 IKE +V++G++PLMTD+G+FVING +RV++SQ+HRSPGV+F S ++ K +Y A Sbjct: 116 -IKEDQVFLGDLPLMTDDGSFVINGADRVVISQIHRSPGVYFTS----SYKGIKKMYTAA 170 Query: 176 IIPY--RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE 226 IIP RG W++ EF+ L ++++ +RK P +++LR L Y Q+ LF E Sbjct: 171 IIPMPKRGPWIELEFN-GGVLEMKVN-KRKFPVSLLLRVLGYDDAQLKALFTE 221 >UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Phytoplasma RepID=RPOB_PHYAS Length = 1240 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 374/992 (37%), Positives = 571/992 (57%), Gaps = 96/992 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F++ G+E + PI+SY+G+ + Sbjct: 10 KKVERRNYSKIIYDVDLPNLIEIQNKSFNWFLKD------GIEELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK-DIKEQEVYMGE 126 + + P + V+E + + +Y L VK L E T+ + K+ V + E Sbjct: 64 IYFGECYSTGPKYSVEESKTKDASYVIQLFVKATL--------ENTLTGETKKSSVLLTE 115 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVF----FDSDKGKTHSSGKVLYNARIIPYRGS 182 +PL+TD GTF+ING ERV VSQ+ RS V+ FD K LY+ ++IP RG+ Sbjct: 116 LPLITDTGTFIINGKERVAVSQIVRSSSVYYSSTFDVKLNKN------LYSGQVIPARGA 169 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF---------EIR 233 W+++E K+ L+V++DR +K+P + + AL + +I++ F K ++ Sbjct: 170 WIEYEEGSKEILYVKLDRSKKIPLSNFIYALGFNNREIIEKVFGKSPLLNSSFVKEEDMD 229 Query: 234 DNKLQMELVPERLRGETASFDIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 +EL + +GE D + +++ +K +T + K L Sbjct: 230 TGNALIELYSKIRQGEKVPVDTARDFIRKRLFDQKKYDLTTVGRYKFNKKLDVLARAEKT 289 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE- 349 Y+ D+++ T E+I + L+ D + L ++ H ++ LF + E Sbjct: 290 YLV-----HDFVNLETKEIILPKHTFLTKDKIEILRKNRHFLLQELFDAQHNLENETDEE 344 Query: 350 --TLRVDPTNDRLSALVEIYRMMRPGE---PPTREAAESLFENLFFSEDRYDLSAVGRMK 404 T + DP + L I R GE P + + + L S D + Sbjct: 345 ILTYKKDPQSRELYIKTNILNF-RTGEIIFPKDTLVTDEVIKRLRKSIQLLDGKVIEFFL 403 Query: 405 FNRSLLREEIEGSGI--------LSKD--------------------------DIIDVMK 430 ++ + ++++E +G+ LSKD DII + Sbjct: 404 RSKDVYQKDLERTGVFNEILEVYLSKDEHDNLQHKVQIVGNNQKETKKHITLSDIIASIS 463 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 +++ G G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S+ + P Sbjct: 464 YYLNLYEGIGNVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKHIKDMISVSKFSEVGPG 523 Query: 491 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 +++N ++ +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDV Sbjct: 524 ELVNFGFLNGVIKTFFANSRLSQFMDQINPLAELTQKRRVSALGVGGINRDRAGVEVRDV 583 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK--VTDGV--VTDEIHYL 606 H +HYGR+CPIETPEGP+IGLI SL++YA+ ++YGF++TP+ K V +G V+++I YL Sbjct: 584 HNSHYGRLCPIETPEGPSIGLIASLAIYAKVDDYGFIQTPFFKVFVQNGASYVSNQIEYL 643 Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 +A +E +IA + L+ + F +D V R GE ++ ++QV Y D+S +Q+VS+ + Sbjct: 644 TADQEKEEIIASSGYELNSDATFQKDKVIARKNGEIGIYPKEQVTYADISPKQIVSIATA 703 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 IPFLEH+D++RALMG+NMQRQAVP L + P+VGTG+E A DSG +A + G+V Y Sbjct: 704 SIPFLEHNDSSRALMGSNMQRQAVPLLVTESPIVGTGIEYRAAKDSGSLIIASQPGIVTY 763 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 VDA +I V D+ E Y LT + +SNQ+T I Q P VSLG+ +++GD+L DG Sbjct: 764 VDAKKI---VTSDQ----EGNKKEYQLTTFEKSNQDTLILQKPIVSLGDNIQKGDILVDG 816 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 PST+ GELALG+N+ VAFM W GYN+ED+I++SE +V+ D +T++HI + + +R+ K G Sbjct: 817 PSTNQGELALGRNILVAFMTWEGYNYEDAIIISEELVKNDVYTSVHINKYSVQTRELKKG 876 Query: 847 P--EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 EEIT ++PNVG A+ LDE GI+ G+EV GDILVGK+TP+G TP+EKL++ Sbjct: 877 SGKEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNVDPTPQEKLIQI 936 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + GEKA + KDSSLRVP G G V VQ F+R Sbjct: 937 VIGEKAREYKDSSLRVPYGEGGIVQSVQYFSR 968 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 183/485 (37%), Positives = 277/485 (57%), Gaps = 82/485 (16%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV +G + GDILV G T +GE L +L A + + +D+ + +S + Sbjct: 800 IVSLGDNIQKGDILVDGPSTNQGELALG--RNILVAFMTWEGYNYEDAII-----ISEEL 852 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI--RAVLVAGGVEA 986 + V+T V +K +++ E++ K++++ E+ + A + R +++ G Sbjct: 853 VKNDVYT--SVHINKYSVQTRELKKGSGKEEITREVPNVGADAIKNLDERGIIIPGSEVK 910 Query: 987 E------------KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 1034 E +D P+++ +++ + ++ ++ + L Y E + ++ R Sbjct: 911 EGDILVGKITPQGNVDPTPQEKLIQIVIGEKAREYKDSSLRVPYGE--GGIVQSVQYFSR 968 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 K GD L PGV + ++V++A KR+I GDKMAGRHGNKGVIS+I P ED+P+ E+GT + Sbjct: 969 K--NGDILPPGVNENIRVFIAKKRKISEGDKMAGRHGNKGVISRILPKEDLPFMEDGTTI 1026 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 D++LNPLGVPSRMNIGQILE HLGM+ Sbjct: 1027 DVMLNPLGVPSRMNIGQILEIHLGMS---------------------------------- 1052 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 A+NL + +ATPVFDG + ++KE+ + +L G+ LYD Sbjct: 1053 ------------------AKNL--NIKVATPVFDGVNDQDLKEISQEANLELDGKKVLYD 1092 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 GRTGE +E ++VG MYM+KL+H+VDDK+HAR+ G Y+LVTQQP+ GK + GGQR+GEME Sbjct: 1093 GRTGEPYENRISVGVMYMIKLSHMVDDKLHARNVGPYTLVTQQPMRGKIREGGQRYGEME 1152 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 WA+ A+GAAYTLQE LT+KSDD+ GR + Y IV G +P +PESF VL+KE+++LG Sbjct: 1153 NWAVHAHGAAYTLQEFLTIKSDDIIGRNQTYSAIVQGKQLPKPNIPESFRVLIKELQALG 1212 Query: 1335 INIEL 1339 + +EL Sbjct: 1213 LYVEL 1217 >UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Carsonella ruddii RepID=RPOB_CARRP Length = 1267 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 351/969 (36%), Positives = 568/969 (58%), Gaps = 37/969 (3%) Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 + F NLF+ + +Y S +G + + L ++ I + + +I+N Sbjct: 323 NFFRNLFYKK-KYFYSLIGAKRIFKRLFLKKNNKLTIYLEIIKKILKFIKFNIQN----- 376 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS----LGDLDTLMPQDMINAKPI 498 D+ D+L N+ I + G++ +F +V + + +++ DLD ++ D+I Sbjct: 377 DNFDNLENKLILNCGKLLSIKFDFLFKKVIKFINYKMNNFKKYKDLDFIVNSDII----- 431 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + +K++F +++LSQF+DQNNPL+EI+H R+IS + G+ +E GF++RD+H +HY +V Sbjct: 432 TIGLKDYFCNNELSQFLDQNNPLAEISHNRKISLISGIGIEKENCGFDIRDIHYSHYCKV 491 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CPI+TPEG NIGLINSL+ ++ N+Y F+ T Y+ G + I +L + + I Sbjct: 492 CPIDTPEGHNIGLINSLAYLSKVNKYNFISTIYKISILGKILG-ITFLDNKFDKHKFIVN 550 Query: 619 ANSNLDE-EGH-FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 NS ++ G F R +D +++ Q++SVGASLIPFL H+DA Sbjct: 551 FNSTIETIYGEIFRSPYFEARKTNYYYYKKFLNIDLIEICGDQIISVGASLIPFLSHNDA 610 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 NR LMG+NMQRQAVP + ++ P+VGTG E + ++S ++ G V Y D +I+IK Sbjct: 611 NRCLMGSNMQRQAVPLIDSENPIVGTGNELEIGLNSNYNILSDLNGYVLYSDNYKIIIKN 670 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 N I Y L KYTR+NQNT +NQ V G+ V+ G+++AD ST GE++L Sbjct: 671 NN--------FIKTYFLEKYTRTNQNTILNQYTKVLKGDFVKVGNIIADSNSTKNGEISL 722 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 G+N+RVAFM W GYNFEDSIL+S ++ ++ F +IHI E V + + G E ++ + Sbjct: 723 GKNLRVAFMSWYGYNFEDSILLSSSILNKNNFNSIHIYEFITVLKYNENGFEIVSNECFG 782 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 E +K+ ++GI+ IG V D++VGK+ PK + + +PEEKL + +F E + + Sbjct: 783 SNEKIKNKV-KNGIIKIGEFVFSKDVIVGKMIPKKKRKFSPEEKLFKIVFSESNFNYYEQ 841 Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 L VP + GT+I V F + K+K ++ QL K+++ ++I+ Sbjct: 842 PLTVPKNIKGTIIAVNDF-KIFYFKNKIFKLLKFEQLNYTCKNINNFFYETFNYYLTKIK 900 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE-QLAEQYDELKHEFEKK---LEAK 1032 +L + +K + + + ++ +L + + +E KK K Sbjct: 901 KLLFNNKITIKKKRINSYNININNIFKIKCFNKKINFKLNIFKNIISNELLKKKNIFVYK 960 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 + + DD +++I+K+ +AVK++I GDKM+GRHGNKGV+S I E+MPYD+ G Sbjct: 961 KINFIKHDDFENSIIRIIKIKIAVKKQIAIGDKMSGRHGNKGVVSNIIDYENMPYDKFGN 1020 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA--KLREFIQRAYD 1150 +D++LNPLGVPSRMN+GQ+LE L + I +K +++ K++ FI+ + Sbjct: 1021 KIDLILNPLGVPSRMNVGQLLEVFLAGSLNLIKSFF-LKIKNLNKISYFKMKLFIKIIFK 1079 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 D + ++L+ F++ V+++ +N++ + + F ++ ++K + + ++ Sbjct: 1080 CIYD--KNINLNIFNNSLVLKIFKNIKNQLNVCVHNFYNFNVNKVNNIIKTIGINKNCEL 1137 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 L+DG TG+++ + V VGY+Y +KLNHLV DK+++RS G YS+VTQQPLGGK+ GGQR Sbjct: 1138 LLFDGITGKRYLQLVNVGYIYFMKLNHLVIDKIYSRSIGPYSIVTQQPLGGKSNLGGQRL 1197 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEMEVWALEAYGAA+ L+EMLT+KSDD+ GR ++YKNI+ G + G+PESF VL+KEI Sbjct: 1198 GEMEVWALEAYGAAFLLKEMLTIKSDDILGRIELYKNIIKGINDANSGIPESFQVLMKEI 1257 Query: 1331 RSLGINIEL 1339 +SL +I++ Sbjct: 1258 QSLCFDIKI 1266 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 25/211 (11%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + +++KK K ++PYLL Q+ S+ F+ + ++ + FP+ Sbjct: 10 FCFSKKKFFHK--------CNLPYLLHNQIGSYNSFLSSKYNSLFSIKKVLKQYFPLICN 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 + N ++ L EP + +IR + + L + + + + + +++ Sbjct: 62 NKNIFIKLKKIELLEPCNTEKYTKIRNLHLFSTLYMYISIYVINKNLNV-------YKKI 114 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 ++G IP MT G F+ING +R+++SQ +S G++F ++K K IIP +GS Sbjct: 115 FLGNIPSMTKKGNFIINGIDRILISQFTKSYGIYFYTEKKKKK--------CIIIPLKGS 166 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRAL 213 WL EF +N + D++ + L L Sbjct: 167 WL--EFIITNNFLIVFDKKINFEINVFLICL 195 >UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax=Cyanidioschyzon merolae RepID=RPOB_CYAME Length = 1036 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 305/582 (52%), Positives = 399/582 (68%), Gaps = 14/582 (2%) Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 N+ +ALVE Y+ MRPGEP T +A+ L FF +YDLS VGR K N+ L + Sbjct: 202 VNNTEAALVEFYKKMRPGEPATVHSAKQLLYARFFDPKKYDLSEVGRYKLNQKLHLDIPL 261 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 IL+ D++ + LI + + VDDIDHL NRR++ VGE+ +NQ R+GL R+E+ + Sbjct: 262 SVHILTTSDLLAGLDYLIQLCLDRARVDDIDHLANRRLKCVGELLQNQVRIGLSRLEKLL 321 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 +E++++G+ L P ++N KP+++A++EFF SSQLSQFMDQ NPL+E+THKRRISALG Sbjct: 322 REKMTIGE--KLQPSSLLNPKPLTSAIREFFASSQLSQFMDQINPLAELTHKRRISALGA 379 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+++A+ N YGF+ETPY V Sbjct: 380 GGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLAIFARVNRYGFIETPYYPVK 439 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 G V I YL+A E NY +A A+ D EG +V R + E + VDYM + Sbjct: 440 KGQVQKSIVYLTADVEDNYRLAPADVKYDREGQICSPIVAVRYRQEWTTCDASHVDYMAI 499 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 S Q +S LIPFLEHDDANRALMG+NMQRQAVP +RA KP V TG E+ + GV Sbjct: 500 SPIQFISAATCLIPFLEHDDANRALMGSNMQRQAVPLIRASKPYVSTGQEKWMV--QGV- 556 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 +K G+V+ V A+ I I+ +D Y L KY +SNQ+TCI+ P V +GE Sbjct: 557 -FSKADGIVRSVQATSIRIQ-------HARGPVD-YALLKYQKSNQDTCIDYRPLVWVGE 607 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 V +G ++A + D GELALGQN+ +A+MPW GYNFED+ ++SER+V ED +T+IHI++ Sbjct: 608 HVVKGQLIAQSAAMDSGELALGQNVLIAYMPWEGYNFEDAFVISERLVYEDVYTSIHIEK 667 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 +R TKLG E+IT IPNVGE AL +LDE GI+ +G+ V G ILVGK+TPKGE+ Sbjct: 668 YETDARQTKLGAEQITRQIPNVGEHALRQLDEHGIISVGSWVEAGSILVGKITPKGESDQ 727 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 PE KLLRAIFGEK VKDSSLR+PNG G VI V++ +RD Sbjct: 728 PPEGKLLRAIFGEKNQHVKDSSLRMPNGSRGRVIHVRILSRD 769 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 151/300 (50%), Positives = 191/300 (63%), Gaps = 51/300 (17%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 QGD+L GV V+V +AVKR IQ GDKMAGRHGNKG++++I P DMPY +GTPVD++ Sbjct: 770 QGDELPAGVNISVRVSVAVKRVIQVGDKMAGRHGNKGIVARILPRCDMPYLPDGTPVDVI 829 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNPLGVPSRMN+GQ+ E LG+AA + R+ Sbjct: 830 LNPLGVPSRMNVGQLFEALLGLAAHRL-------------------------------RK 858 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 ++ + F + M E A+ +F + + LK L S Q LYDGR+ Sbjct: 859 RIKIVPFDE---MYHKE--------ASRIF-------VHQQLKRAAL--SAQTILYDGRS 898 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 GE+F+ VTVG YMLKL HLVD+K+HARSTG YSLVTQQPLGG+AQ GGQR GEMEVWA Sbjct: 899 GEKFDNAVTVGMAYMLKLVHLVDEKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWA 958 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 LEAYGAAYTLQE+LT+KSDD+ GRT IV G PESF VL++E+++LG+++ Sbjct: 959 LEAYGAAYTLQELLTLKSDDMEGRTATLNAIVKAQPIPRGGTPESFKVLMRELQALGLDV 1018 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 116/207 (56%), Gaps = 18/207 (8%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR--LGEPVFDVQE 84 L+++Q +S+ F+ + L+ F + PI Y+G EL ++ + L P + Sbjct: 4 LIAVQRNSYYTFLTKS------LKEEFDKISPIVDYTGQLELHLITSKMELKPPKITPVQ 57 Query: 85 CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERV 144 + + +TYS + + ++L ++ D+++Q +Y GEIPLMT++ TF+ING ERV Sbjct: 58 AKRQDITYSVGMYMPVQLWNHQ-------TGDVRQQMIYFGEIPLMTEDATFIINGAERV 110 Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 +V+Q+ RSPGV+F + K H + A + RG+W+ +E D + L+VR+D+ RK+ Sbjct: 111 VVNQIVRSPGVYFQALWDKQHVR---TFEATFMANRGAWIKYELDKQKLLWVRLDKNRKM 167 Query: 205 PATIILRALNYTTEQILDLFFEKVIFE 231 P I L+AL ++I + +FE Sbjct: 168 PLVIFLQALGLNLQEIKPHLTNREVFE 194 >UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax=Thermotogaceae RepID=RPOB_PETMO Length = 1187 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 302/618 (48%), Positives = 420/618 (67%), Gaps = 33/618 (5%) Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR------EE 413 L A EI+ ++P E P + A+ E+++F+ +++D S +GR K L + E Sbjct: 309 LEAYKEIFSKLKPTEIPRAQKAKEEIEDMYFNPEKFDFSQIGRQKIQVKLRKAYIDYLRE 368 Query: 414 IEGSGI----------------LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 +E I + K DII + L+ ++ +D DHLGN+R+RSVG Sbjct: 369 VEKKDISEDMEDKIKYPIKTFAVDKLDIILSARYLLHVKENIEGLDTRDHLGNKRVRSVG 428 Query: 458 EMAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 E+ + +F ++ + E+L+ + ++ + PQ +IN++ I A +FF SSQLSQF+D Sbjct: 429 ELMQIEFERAFSKMIQHAPEKLAGVQSINKISPQSLINSRSIMTAFHQFFASSQLSQFLD 488 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 Q NPL+E+THKRR+SA+GPGGL RE A FEVRDVH +HYGR+CPIETPEG NIGLI S++ Sbjct: 489 QVNPLAELTHKRRLSAIGPGGLKREHAKFEVRDVHHSHYGRMCPIETPEGANIGLITSMA 548 Query: 577 VYAQTNEYGFLETPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 + A+ +EYGFL+TPY +V V + I YLSA EE Y IA A++ + E+G VE+ + Sbjct: 549 ILAKVDEYGFLKTPYYRVKHAKVDLNNIVYLSADEEELYRIAPASAEIGEDGSLVEEYIE 608 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 R G+ SLF +D+++Y+ V+ +Q+ SV A+LIPFLEHDDANRALMG+NMQRQAVP LR Sbjct: 609 ARYLGKVSLFHKDEIEYISVTPKQIASVSAALIPFLEHDDANRALMGSNMQRQAVPLLRP 668 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI-KVNEDEMYPGEAG----IDI 750 P VGTG+E A DSG +AK G+V YVD +IVI +++E+ ++ D Sbjct: 669 QAPFVGTGVEWLAARDSGYLIMAKHKGIVDYVDGRKIVITRLDEENNVLKDSNDEPLKDE 728 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L KY RSNQ+ CINQ+P V++G+ V +G +ADGPS D+GELALG+N+ + F+PW GY Sbjct: 729 YTLLKYVRSNQDMCINQVPIVNVGDVVTKGQAIADGPSMDMGELALGRNIFIGFLPWEGY 788 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 NFED+I+VS+ +++ D FT+IHI+ + DT+LGPEEITADIPNV + L LDE GI Sbjct: 789 NFEDAIVVSQELLENDAFTSIHIEVFETKAMDTQLGPEEITADIPNVKKELLRNLDEEGI 848 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V IG+ V+ GDILVGKVTP+GE+ TPEEKL++++FG+K D+KDSSL VP+G+ G VID Sbjct: 849 VKIGSYVSSGDILVGKVTPRGESDTTPEEKLIKSVFGDKGRDIKDSSLTVPHGIEGRVID 908 Query: 931 VQVFTRDGVEKDKRALEI 948 VQ+F R KD +LEI Sbjct: 909 VQIFDR----KDIPSLEI 922 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 156/312 (50%), Positives = 192/312 (61%), Gaps = 65/312 (20%) Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 L GV K VKV++A K+ +Q GDK+AGRHGNKGVIS I EDMP+ +GTP+ ++L+PL Sbjct: 920 LEIGVNKYVKVFIATKKTLQVGDKLAGRHGNKGVISTILNKEDMPFLPDGTPLQMLLSPL 979 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 GVPSRMNIGQ+LE HLG Sbjct: 980 GVPSRMNIGQVLELHLGW------------------------------------------ 997 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK---------LGDLP--TSGQI 1210 + + N PI FDGA E+EI + L LGD P +G+I Sbjct: 998 --------LSMLTNDYYATPI----FDGATESEIMDELSKVREEHELYLGDDPDQPNGKI 1045 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 L DGRTGE F+ PV VG MYMLKL+H+ DK+HARSTG YSL+ QQPLGGKA FGGQRF Sbjct: 1046 VLRDGRTGEPFDFPVAVGSMYMLKLSHIAKDKIHARSTGPYSLIHQQPLGGKAHFGGQRF 1105 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEMEVWALEA+GAA+TL EMLT KSDD+ GR ++YK I+ G + EPG+PESF VL KE+ Sbjct: 1106 GEMEVWALEAHGAAHTLNEMLTYKSDDIKGRNEVYKAILKGENLPEPGIPESFKVLTKEL 1165 Query: 1331 RSLGINIELEDE 1342 + L ++I+L DE Sbjct: 1166 QGLMLDIKLYDE 1177 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 26/228 (11%) Query: 9 KRIRKDFGKRPQVLDV-PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-----SY 62 +R RK FGK P+ ++ L+ IQ DSF+ F+++ + + + PI+ S Sbjct: 10 RRERKFFGKVPEKTEIYEDLVKIQKDSFRDFLDKK------IMESIKRYMPIKIPVKASG 63 Query: 63 SGNSE--LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 N E + +V + + F EC+ +G+TY+ +K+R+ T + I++ Sbjct: 64 KKNKEFLIDFVDVKFEDSSFSENECRDKGLTYAGKAYLKVRI------TDSATGEMIEKD 117 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 ++++ IP MT+ G F++NG ERVIV+QL RSPGV+F K + + K ++ A +P + Sbjct: 118 DIFLCNIPYMTERGIFIVNGAERVIVNQLVRSPGVYF--IKEEETDTSKEMFIAHFLPIK 175 Query: 181 GSWLDFEFDP---KDNLFVRIDRRRKLPATIILRALNYTTE-QILDLF 224 G+WL+ ++P K+ L VRIDR+RK + LRAL Y + IL LF Sbjct: 176 GAWLEILYNPNPGKEVLQVRIDRKRKFNFFLFLRALGYENDLDILRLF 223 >UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Tax=Mycoplasma RepID=RPOB_MYCH2 Length = 1220 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 375/959 (39%), Positives = 545/959 (56%), Gaps = 94/959 (9%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 R+ +G + L+ P L +SF F+ G+ AF +FPI S +G E+ + Sbjct: 16 RRFYGVANKTLETPDFLDPVRESFDWFL------HVGIPEAFDRIFPIVSANGKLEISFR 69 Query: 72 --SYRLGEP---VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 S R+ +P ++E +I+G TYSA RV + LV E E ++EQE+ + E Sbjct: 70 RGSLRVEKPENEYLAIREAKIKGKTYSA--RVYVTLVKVHSEDGE-----MEEQEILLAE 122 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 P MT GTF+ING E+V+VSQL RSPGV F + + + + IIP GSW++ Sbjct: 123 FPFMTQGGTFIINGFEKVVVSQLIRSPGVCF-RENVRNQQADDLFNKVEIIPQLGSWMEI 181 Query: 187 EF----DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 + D + RID+ + +P LRA+ +T E + F EL+ Sbjct: 182 FHKVTGNQVDTVKFRIDKHKNIPLLSFLRAIGFTNETVRKYFGN-----------SPELL 230 Query: 243 PERLRGETASFDIEANGKVY--VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 E +R E +Y V K RIT ++ L +P + Sbjct: 231 -ESIRRHKLESLEENLELIYRIVRKDDRITEEGLKNL---------IPSIIFN----ERR 276 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSG------HKRIETLFTNDLDHGPYISETLRVD 354 Y STG + A L+L+ ++SQ+ K+ + LF G YI+ L ++ Sbjct: 277 YNLASTGRFMLNA----KLNLVERISQTYLAEDLVSKKNKILFK----KGTYITRQLALE 328 Query: 355 ---PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 N+ L EI + R+ + ENL+ R+ ++ V +S+L+ Sbjct: 329 IQEKFNNEEIPLSEIEGV--DSTIYARQLEITRNENLW---KRFYVAIVKVWPNKKSMLQ 383 Query: 412 EEIEGSGILSKD-----------DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 E E +++ D DII ++ ++ + G+ DD D L N+RI SVGE+ Sbjct: 384 ES-EPVNVIATDPNLNEKTLVLSDIIAIVSYYFNLLSNLGKSDDPDSLVNKRIVSVGELL 442 Query: 461 ENQFRVGLVRVERAVKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 +NQF + L ++E+ KE++S DL L + +IN KPI K FF SS+LSQFMDQ N Sbjct: 443 QNQFLIALTKIEKNSKEKISTKSDLSQLTVKSIINNKPIYNQFKNFFNSSKLSQFMDQIN 502 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 PL E+ KR++++LGPGGL R+ A FEVRDVH THYGR+CP+ETPEG NIGLI + SV++ Sbjct: 503 PLGEMASKRKVTSLGPGGLNRDTAQFEVRDVHTTHYGRICPVETPEGQNIGLILNFSVFS 562 Query: 580 QTNEYGFLETPYRKVTDGVVT-DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 + N+YGF+ TPY +V + +V ++H+L+A EE + AQ+ +D+ + D +T R Sbjct: 563 RINQYGFIITPYYQVKNRIVDYSKVHWLAASEEFDKSFAQSGVEIDQNNRIIPDKLTVRK 622 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + +QV+Y+DVS+ Q+ S+ AS IPFLE++DANRALMG+NMQRQAVP ++++ P Sbjct: 623 NQTYLVLDAEQVNYIDVSSMQMTSISASAIPFLENNDANRALMGSNMQRQAVPLIKSEAP 682 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 LV TG+E AVA S A G V YVDA +I+I +D P +I+ L + + Sbjct: 683 LVATGIEEAVARFSATNLRAAISGKVTYVDAKKIII---DDGEKP-----EIHYLRYFEK 734 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 SNQ T I Q P V +G+ V++G ++ DGPSTD GELALG+N+ VAF W GYN+ED+I++ Sbjct: 735 SNQETLILQKPTVKVGDKVKKGQLICDGPSTDNGELALGKNVLVAFSTWYGYNYEDAIII 794 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 SE++V++D FT+IHIQE R TK G + +TA+IPN + LD +GIV +G+EV Sbjct: 795 SEKLVKDDVFTSIHIQEQTIKFRSTKAGNDILTAEIPNASAKSRLHLDANGIVIVGSEVD 854 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GDILVG+ +PKGE T EEKL+ AI+G+KA KD+SLRV NG GTVIDVQ+ +RD Sbjct: 855 TGDILVGRTSPKGEDNPTAEEKLMAAIWGKKALAQKDTSLRVKNGEGGTVIDVQILSRD 913 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 153/303 (50%), Positives = 189/303 (62%), Gaps = 54/303 (17%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 QGD+L GV ++K+ +A KR+I+ GDKMAGRHGNKGV+S I P+EDMP+ E+GTPVDIV Sbjct: 914 QGDNLEEGVGMLIKILIAQKRKIKVGDKMAGRHGNKGVVSVILPVEDMPFLEDGTPVDIV 973 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNP GVPSRMNIGQ+LE HLGM AK + K F+ +D Sbjct: 974 LNPQGVPSRMNIGQVLELHLGMVAKKLKTK----------------FVTPVFD------- 1010 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 G K IK+L ++P SG+ +L+DG + Sbjct: 1011 -------------------------------GIKIETIKKLFDEANIPESGKFKLFDGIS 1039 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ FE PV+VGYMYMLKL H+VDDKMHARS G YSL TQQPLGGK+Q GGQRFGEME WA Sbjct: 1040 GQAFENPVSVGYMYMLKLLHMVDDKMHARSIGPYSLTTQQPLGGKSQNGGQRFGEMETWA 1099 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 LE++GA L E+LT KSD++ GR +Y NI+ G PG PESFNVL E+R L I + Sbjct: 1100 LESFGATSVLSELLTYKSDNIQGRNLLYNNIISGGKIPSPGTPESFNVLAYELRGLLIKL 1159 Query: 1338 ELE 1340 E+ Sbjct: 1160 EVH 1162 >UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acholeplasma sp. DM-2009 RepID=B9VQ44_9MOLU Length = 1223 Score = 577 bits (1488), Expect = e-163, Method: Compositional matrix adjust. Identities = 290/550 (52%), Positives = 385/550 (70%), Gaps = 33/550 (6%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DII + +++ +G G++DDIDHL NRR+R +GE+ +NQFR+GL ++E+ +K+++ Sbjct: 493 ITVSDIIASISYYLNLYDGVGKIDDIDHLSNRRLRLIGELLKNQFRIGLAKLEKNIKDKM 552 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 S D Q +IN KP++A++KEFFGSSQLSQFMDQ NPL+E+T KRR+SALG GGL Sbjct: 553 STADAKEASLQSLINIKPLTASLKEFFGSSQLSQFMDQINPLAELTQKRRVSALGTGGLA 612 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG-- 597 R+RAG EVRDVH +HYGR+CPIETPEGP+IGLI+SL+ YA+ ++YGF++TPY KV Sbjct: 613 RDRAGVEVRDVHESHYGRICPIETPEGPSIGLISSLASYAKVDQYGFIQTPYLKVDKSDP 672 Query: 598 ---VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 VT E Y +A EE +++IA A+S DE GHF + V R G++ + +VDYMD Sbjct: 673 EHPFVTSEYVYFTAGEEEHHIIASADSQTDENGHFKTETVIGRFMGDTRSYPSKKVDYMD 732 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS +Q+VSV S IPFLEHDDA+RALMGANMQRQAVP L D P+VGTG+E A DSG Sbjct: 733 VSPKQIVSVATSSIPFLEHDDASRALMGANMQRQAVPLLVPDSPIVGTGIEYRSAKDSGS 792 Query: 715 TAVAKRGGVVQYVDASRIVIKV---------------NEDEMYPGEA------------- 746 VA GVV Y D +IVI V ++D + EA Sbjct: 793 AIVAHVDGVVTYADGRKIVIAVKPEASIKTTRGKLVYDKDTEFNWEAYDQIRQAKMTDLL 852 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 + Y LT++ RSNQ+T I Q P V +GE +++GDV+ADGPS + GELALG+N+ VAFM Sbjct: 853 RFETYPLTQFLRSNQDTSILQKPIVQIGEKIDKGDVIADGPSINKGELALGRNVVVAFMT 912 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 W GYN+ED++++SE +V+ D +T+IHI E SRDTKLG EEIT +IPNV AL LD Sbjct: 913 WEGYNYEDAVIMSEDLVKNDVYTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLD 972 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 + G+V G EV GDILVGK+TPKG+T+ TPEEKLL+AIF EKA +V+D+SL+VP+G G Sbjct: 973 DRGVVIPGTEVKEGDILVGKITPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGG 1032 Query: 927 TVIDVQVFTR 936 V +Q F++ Sbjct: 1033 IVHSIQYFSK 1042 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 116/235 (49%), Positives = 144/235 (61%), Gaps = 54/235 (22%) Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + GD+L PGV ++++VY+ KR+I GDKMAGRHGNKGVISKI P EDMPY +GTPVDI Sbjct: 1043 SNGDELGPGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMPYMADGTPVDI 1102 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 +LNPLGVPSRMNIGQ+LE HLGMAAK +G K+ + D Sbjct: 1103 MLNPLGVPSRMNIGQVLEIHLGMAAKKLGIKVATPV--------------------FDGL 1142 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 ++DL E+VM A G + ++DG R Sbjct: 1143 TQLDL-----EQVMAEAGMASDGKQV---LYDG--------------------------R 1168 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 TGE +E V+VG MYM+KL+H+VDDK+HARS G Y+LVTQQP+GGKAQ GGQRFG Sbjct: 1169 TGEPYENRVSVGVMYMIKLSHMVDDKLHARSVGPYTLVTQQPMGGKAQNGGQRFG 1223 >UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Tax=Embryophyta RepID=RPOB_GNEPA Length = 1108 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 362/983 (36%), Positives = 528/983 (53%), Gaps = 159/983 (16%) Query: 381 AESLFENLF-----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 +ESL E+L+ F R L +GR N+ L E + L D++ ++ LI + Sbjct: 242 SESLSESLYKKFTNFLSKRCKLGRIGRRNLNKKLNLEIPDNEIFLLPQDVLAIIDYLIKV 301 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL-------DTLM 488 G G VD+IDHL NRR SV ++ + + + L RV+ +++ + ++ ++ Sbjct: 302 SYGVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVLIQKTMQTIEMLRKKQNKRIML 361 Query: 489 PQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 P+ + + I+ +K FFG LSQF++Q N L+EI H R++S LGPGGLT A F R Sbjct: 362 PEIPLVSTQITKTLKHFFGLHPLSQFLEQTNSLAEILHARKVSFLGPGGLTERTANFRAR 421 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV-VTDEIHYLS 607 D+HP++YGR CPI TPEG N GLI SL++ A+ N +GFLE+P+ V +I YLS Sbjct: 422 DIHPSYYGRFCPINTPEGQNAGLIASLAISARIN-FGFLESPFYNVAKKYQKAKKIVYLS 480 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL-FSRDQVDYMDVSTQQVVSVGAS 666 E+ Y IA N L + E T + L + +Q+ + Q S+G S Sbjct: 481 PSEDVYYRIALGNC-LSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFSIGVS 539 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 LIPFLEH+DA RALMG+NMQRQAVP+++ +K +VGTG+E VA+DSG A++ + G +QY Sbjct: 540 LIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEGRIQY 599 Query: 727 VDASRIV--IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 DA+ IV +K N + L Y RSN NT ++Q S + V +G +LA Sbjct: 600 SDAATIVSVLKGNTTQT----------ELQIYQRSNSNTLMHQKTHASQAKYVRKGQILA 649 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI---QELACVSR 841 DG + GE+ LG+N+ VA+MPW GYNFED+IL+SE ++ +D FT+ HI + C + Sbjct: 650 DGAAMLGGEICLGKNILVAYMPWQGYNFEDAILISECLIYKDIFTSFHITRYETTICTAE 709 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT--PEE 899 E++T +IP + +L LD++G+V +G+ V GD+LVGK+ P+ + PE Sbjct: 710 -----CEKMTREIPRLATYSLRHLDKNGLVRVGSWVQPGDVLVGKLRPRSSEDFSRFPEL 764 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 +LL+ +F S +K++ LR NG G VID Sbjct: 765 RLLQDLFC--TSPIKETCLRA-NG-KGRVID----------------------------- 791 Query: 960 LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD 1019 V KL +D D EK +Q + + YD Sbjct: 792 ------------------------VNWSKLQAFCKD--------DLEKGHQDDDTEDIYD 819 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 E + EK + ++ + V VYL KR+IQ GDK+AGRHGNKG++S + Sbjct: 820 EAEDALEKVYQLNNYNLSSDSEK-------VHVYLLEKRKIQVGDKVAGRHGNKGIVSIV 872 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML----KQQ 1135 +DMP+ ++G +D+VLNPL VPSRMN+GQI E LG+A G +K + + + Sbjct: 873 LSRQDMPFLQSGISLDMVLNPLSVPSRMNVGQIFECLLGLA--GTMNKHYRIPPFDERYE 930 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 QE ++ F Y+L Q + F E + Sbjct: 931 QEASRKLVF----YELYKASEQTANPWIFELEHL-------------------------- 960 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 G+ +++DGRTGE FE+PVT G Y+LKL H V+DKMHARSTG+Y+ +T Sbjct: 961 ------------GKTQIFDGRTGEIFEQPVTTGNAYILKLIHQVNDKMHARSTGNYARIT 1008 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM 1315 QQP+ GK++ GGQR GEMEVWALE++G AY L+EMLTVK+D + R K+ ++I+DG+ Sbjct: 1009 QQPVQGKSKGGGQRLGEMEVWALESFGVAYVLREMLTVKADHIRARKKILRSILDGHSVP 1068 Query: 1316 EP-GMPESFNVLLKEIRSLGINI 1337 + ESF VL KE+ SL + + Sbjct: 1069 KADSATESFRVLSKELNSLALEL 1091 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 114/210 (54%), Gaps = 23/210 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--- 71 F ++ ++ +P IQL+ F +FIE D ++ F + Q E++++ Sbjct: 3 FDEKKEMFTIPEFGQIQLEGFCRFIEYDLLDKF---VKFPKIANTQK-----EVEFLFDK 54 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 +Y++ EP ++ + +T+S+ L V + + + K++ +Y+GEIPLM Sbjct: 55 NYKIIEPSIKEKDAVYQRLTFSSKLFVPAFFIYWNKIK--------KKKIIYLGEIPLMN 106 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 +NGTF+ING RV+V+QL RSPG+++ ++ +T + +Y + +I G L FE D K Sbjct: 107 NNGTFLINGNYRVVVNQLIRSPGIYYSLERKRTGN----IYTSTLISDCGGRLKFEIDIK 162 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQIL 221 N+++RI R++ + + A+ E+IL Sbjct: 163 QNIWIRISRKKNVSILVFFFAMGLDIEEIL 192 >UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax=Thermotogaceae RepID=RPOB_THEP1 Length = 1263 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 279/509 (54%), Positives = 371/509 (72%), Gaps = 12/509 (2%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL-GDLDTLMPQDMINAKPISAA 501 D DHLGN+R+R+VGE+ + +F R ++A++ERL+L L + Q +IN K I + Sbjct: 485 DTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINSLSKVSIQSLINIKSIIST 544 Query: 502 VKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 V +FF +QLSQFMDQ NPLSE+THKRR+SA+GPGGL RE FE R+VH + YGR+CPI Sbjct: 545 VNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKVFEARNVHYSQYGRLCPI 604 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 ETPEG NIG I SL++Y + +EYGFL TPYRKV +G VTDE+ YL A EE ++ I A + Sbjct: 605 ETPEGANIGFITSLAIYTKIDEYGFLMTPYRKVVNGKVTDEVVYLRANEEEDFKIVPATT 664 Query: 622 NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 +DEEG+ + + V R + L R++VD+MDVST+Q SV ASLIPFLEHDDA+RALM Sbjct: 665 PVDEEGNIIPERVVARVGEDIRLVPREEVDFMDVSTKQPFSVSASLIPFLEHDDASRALM 724 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE- 740 G+NMQRQAVP L+A+ P VGTGME A +SG +A+ G+V+ VDA+RIV+ ++ Sbjct: 725 GSNMQRQAVPLLKAEAPFVGTGMEWEAAKNSGYVTLAEHDGIVKEVDAARIVVHRTDENG 784 Query: 741 --MY--PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 MY G +D Y L K+ RSNQ+T INQ P V+ G+ V++GD +ADGP+TD+GELAL Sbjct: 785 NLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKKGDPIADGPATDMGELAL 844 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 G+N+ VAFMPW GYN+ED+ILVS+ +++ED FT+IHI+ +R+T+LGPEEITADIPN Sbjct: 845 GRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYETQARETRLGPEEITADIPN 904 Query: 857 VGEAALSKLDESGIVYIGAEVTGG------DILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 V + L LDE+GI+ +GA V ILVGKVTPKGE TPEEK++R++FGE+ Sbjct: 905 VSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGEGDTTPEEKIIRSVFGERG 964 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 DVKD+SLR+P+GV G VI V V+ ++ + Sbjct: 965 RDVKDTSLRLPHGVEGRVIRVDVYDQNDI 993 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 160/313 (51%), Positives = 197/313 (62%), Gaps = 65/313 (20%) Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 +L GVLK+V+VY+A ++ + GDK+AGRHGNKGV+S I P EDMP+ +GTPV +VLNP Sbjct: 995 ELGAGVLKLVRVYVASRKTLDIGDKLAGRHGNKGVVSNILPKEDMPFLPDGTPVQMVLNP 1054 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 LG+PSRMN+GQILETHLG +AKL Sbjct: 1055 LGIPSRMNVGQILETHLGW------------------LAKL------------------- 1077 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI---------KELLKLGDLPTS--GQ 1209 G ATPVF+GAKE EI K L LGD + G+ Sbjct: 1078 -----------------TGKWFATPVFEGAKEDEILRPLYEERKKRGLHLGDDENNPNGK 1120 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 + L DGRTGE F+ PV VGYMYMLKL H+ +K+HARSTG YSL+ QQPLGGK+ FGGQR Sbjct: 1121 VVLRDGRTGEPFDNPVVVGYMYMLKLVHIAKEKIHARSTGPYSLIHQQPLGGKSHFGGQR 1180 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 GEMEVWALEAYGAA+TL EMLT+KSDD+ GR + YK I+ + EPG+PESF VL+KE Sbjct: 1181 LGEMEVWALEAYGAAHTLAEMLTIKSDDIKGRNEAYKAILKNMNIPEPGVPESFRVLIKE 1240 Query: 1330 IRSLGINIELEDE 1342 +R L +++ L DE Sbjct: 1241 LRGLALDVRLYDE 1253 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 123/416 (29%), Positives = 202/416 (48%), Gaps = 76/416 (18%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 +R R FGK + L +P L+ IQ S+++F+E+ GL + PI S + S+L Sbjct: 8 RRTRVSFGKTQEPLPIPDLVEIQKISYRRFLEE------GLLEVLKKFSPIYSQATRSDL 61 Query: 69 ---------QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 ++VS R+GEPV D EC+ +G+TYS P+ RL + ++KE Sbjct: 62 KKSDRGFALEFVSTRIGEPVVDPLECKAKGLTYSVPIYATARLT-------DMKSGEMKE 114 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 +EV++G IP MTD GTF+ING ERV+V+Q+ SPG++F S+ Y +P Sbjct: 115 EEVFLGYIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYIDREE-----YGGYFLPS 169 Query: 180 RGSWLDFEFDPKDN-LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 RG+WL+ DP D L+ +D ++ +N L LF + + +E +D + Sbjct: 170 RGAWLEVILDPYDGVLYAGLDGKK----------VN------LFLFLKTIGYE-KDEDI- 211 Query: 239 MELVPERLRGETASFDIEANGKVYVEK---GRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 + L P L + + G + +E G R A L KD +A + Sbjct: 212 LSLYPTYLDADDEDSLLLHVGSILLEDIYDGDRKIAEKWDILTKD-----------LAER 260 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 ++ D I++ + ++ ++Q+ +++ L ++ + G E ++ Sbjct: 261 ILMIDDINQ--------------IKIVHPIAQNTFEKMLELVSSSGEEGEEEEEKTKIYG 306 Query: 356 TNDR--LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 N+ + A +EI+R +RP E P AA+ +LFF+ +RYDLS VGR K N L Sbjct: 307 LNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFFNPERYDLSEVGRYKVNERL 362 >UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax=Mycoplasma penetrans RepID=RPOB_MYCPE Length = 1375 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 269/531 (50%), Positives = 368/531 (69%), Gaps = 25/531 (4%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 LS DI+ + +I++ G DDIDHLGN+R++ + E+ + + + GLVR+E+ + ++L Sbjct: 479 LSISDILSITSYVINLDYDIGFYDDIDHLGNKRLKLIDELLKTRAQAGLVRIEKFINDKL 538 Query: 480 SLGD--------------LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 ++ D +L + +IN KP + KEFF S QL+QF+DQ NPL+E+T Sbjct: 539 AIADGANKSQEQSEEQEPKKSLTVKSIINTKPFQISFKEFFNSHQLTQFLDQQNPLAELT 598 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 +KRRISA+GPGG++RE ++RDVH +HYG++CPIETPEG NIGLI SL+ YA T+E G Sbjct: 599 NKRRISAMGPGGISREDPNLDIRDVHYSHYGKICPIETPEGMNIGLIMSLATYASTDENG 658 Query: 586 FLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 FL TPYR V +GV+TDEI +L+A+ E Y+IA +N N+ E+ F ED V CR + F Sbjct: 659 FLITPYRIVKNGVITDEIRWLTALSEDEYIIACSNLNV-EKNKFKEDKVLCRYRSSWEFF 717 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 VD++D+S +QVVS+ AS IPFLE+DDANRALMGANMQRQA P + P+VGTG E Sbjct: 718 DVKDVDFIDISPKQVVSIAASSIPFLENDDANRALMGANMQRQATPLISPIAPIVGTGNE 777 Query: 706 RAVAVDSGVTAV--AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 +A DSG+ AV ++ G V YVD I IK +E +Y LTK+ +SNQNT Sbjct: 778 YKIAHDSGMAAVYDGEKDGTVSYVDGGTIKIKSGSEE--------KVYELTKFNKSNQNT 829 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 C NQ+P VS+GE V +G +ADGP+ GELALGQN+ VAF W+GYN+ED+I++S+R+ Sbjct: 830 CNNQVPIVSVGEKVTKGTTIADGPAMSNGELALGQNVLVAFTTWSGYNYEDAIILSKRLF 889 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 ED FT+IHI E + TK G EEIT DIPNV E++ LD+ GI+ +GAEV GD+L Sbjct: 890 MEDIFTSIHIVEYSVDCLKTKNGDEEITRDIPNVSESSKKYLDDEGIIMVGAEVKEGDVL 949 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 VGK++PKG+ +LT EEKLL+AIFG+K+ + K++SL+VP+G GTV V+ F Sbjct: 950 VGKISPKGQVELTSEEKLLQAIFGDKSKNHKETSLKVPHGGEGTVAMVKRF 1000 Score = 292 bits (747), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 164/346 (47%), Positives = 215/346 (62%), Gaps = 39/346 (11%) Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 KR K+ +L V++ +KVY+ KR+IQ GDKMAGRHGNKG+ISKI P+EDMP+ E+ Sbjct: 997 VKRFKVEDDYELNADVIEQIKVYVVQKRKIQIGDKMAGRHGNKGIISKIVPVEDMPHLED 1056 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAK------------------------GIGD 1126 GT +DI+LNPLGVPSRMNIGQILE HLG+A K GI + Sbjct: 1057 GTTIDIMLNPLGVPSRMNIGQILELHLGLAMKKLTLSKVLELYYDKKPASDFSLWFGIHE 1116 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + + L + E L E ++ D DLS + + + K ATPV Sbjct: 1117 EASRNLIKNLEKI-LNEKQIKSLDQANKEFTDFDLSLALSRSGISREKLIYK---TATPV 1172 Query: 1187 FDGAKEAEIKELL----------KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 F+G ++KE + KLG+ SG+ L DGRTGE F+ V+VG MYMLKL+ Sbjct: 1173 FEGVNRTDLKEAMTEAGIDPINGKLGE-GKSGKFNLIDGRTGEYFDGEVSVGIMYMLKLD 1231 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+VDDK+H+R+ G YS +TQQPLGGK+Q GGQRFGEMEVWALEAYGAA+ L+E+LT+KSD Sbjct: 1232 HMVDDKIHSRAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAHNLRELLTIKSD 1291 Query: 1297 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 DV GR Y I+ G E G+PESF +L K+++ LG+ + + E Sbjct: 1292 DVKGRNNTYNAIIKGKPIPESGLPESFKLLTKQLQGLGLQVSITKE 1337 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 27/232 (11%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 +R+D+ K + + P LL++Q ++F KFI+ + LE +S+FPI+S G L+Y Sbjct: 16 LRRDYSKIEKNFNEPNLLNLQKNAFHKFIDTE------LEGTIKSIFPIKSIGGRYSLEY 69 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE-------VY 123 + +L +P +E + G TY PL V L +V + E+ E + ++ Sbjct: 70 IGMKLEKPKRSEKEARNEGKTYDRPLYVDLAIV--DNESGEVKKTTKSSKNKASNTDGIF 127 Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVL---YNARIIPY 179 IP++T+ GTF++NG E+ ++SQ+ RSPG + + K +S K + Y I+P Sbjct: 128 FASIPMITEKGTFIVNGIEKFVISQIVRSPGAYILTKSQIKLSNSRKRIQEGYICEILPA 187 Query: 180 RGSWLDFEFDPKDNLFVRIDRR-------RKLPATIILRALNYTTEQILDLF 224 +G+ L F F ++ F+++ R +P T L+AL E+IL++F Sbjct: 188 KGT-LFFIFMAENKDFIQVMFRDAIGESTHTIPITAFLKALGLNKEEILNIF 238 >UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax=Mycoplasma gallisepticum RepID=RPOB_MYCGA Length = 1390 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 266/574 (46%), Positives = 386/574 (67%), Gaps = 36/574 (6%) Query: 414 IEGSG----ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 I+GS L+ D+I ++ ++++ G DDIDHLGN+R++ + E+ +++ + G++ Sbjct: 479 IDGSNESIETLTLADLISIVSYIVNLPFNIGLYDDIDHLGNKRLKLINELLKSKVQTGMM 538 Query: 470 RVERAVKERLS-------LGDLDT---------------LMPQDMINAKPISAAVKEFFG 507 R+E+ +K++L L D D L + +IN KP +K+FF Sbjct: 539 RIEKYIKDKLQTADGNNKLADQDAENDPDSDLGTKSSNDLTVKSVINPKPFQIVIKDFFN 598 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 + QL+QF+DQ NPLSE+T+KRRISA+GPGG++RE ++RDVH +HYGR+CPIETPEG Sbjct: 599 THQLTQFLDQQNPLSELTNKRRISAMGPGGISREDPNLDIRDVHYSHYGRICPIETPEGM 658 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD--E 625 NIGLI SL+ YA ++ GFL TPY KV +G +TD++ +L+A+ E Y+IA+A+S +D + Sbjct: 659 NIGLIMSLAFYATIDKNGFLMTPYLKVENGKITDKVEHLTALREDEYIIAEASSYMDVAK 718 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 +G + + R + L+ QVDY+DVS +QVVSV ASLIPFLE+DD++RALMGANM Sbjct: 719 DGTINNEKIIARYRSSQDLYDPKQVDYIDVSPKQVVSVAASLIPFLENDDSSRALMGANM 778 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQA P L+ PLVGTG+E +A DSG+ AK G V YVDAS+I +K +++ Sbjct: 779 QRQATPLLKPYSPLVGTGVEYKIAQDSGMLVTAKNPGTVTYVDASKITVKGEDNKSTD-- 836 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 YNL K+ +SN+NTC NQ P V++G+ +E LADGPS GELALGQN+ V F Sbjct: 837 -----YNLLKFVKSNKNTCYNQSPIVAVGDKIETNQALADGPSMKNGELALGQNVLVGFT 891 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 W+GYN+ED++++S+R+ ++D +++IHI E TK G EEIT DIPN+ E+A L Sbjct: 892 TWSGYNYEDAVIISDRLFKDDVYSSIHIDEYTIECLRTKNGDEEITRDIPNISESAKRYL 951 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE G++ +GAEV GDILVGK +PKG+ +LTPEEKL++AI G+K V++SSL+VPNG Sbjct: 952 DEEGVIMVGAEVKEGDILVGKTSPKGQVELTPEEKLIQAILGDKVKQVRESSLKVPNGGD 1011 Query: 926 GTVIDVQVFT-RDGVEKDKRALEIEEMQLKQAKK 958 G V ++ F+ +G E + LE+ ++ + Q +K Sbjct: 1012 GIVAGIKRFSIANGDELEDDVLELVKVYVVQKRK 1045 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 163/333 (48%), Positives = 224/333 (67%), Gaps = 27/333 (8%) Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 KR I GD+L VL++VKVY+ KR+IQ GDK+AGRHGNKG+ISKI EDMP+ E+G Sbjct: 1018 KRFSIANGDELEDDVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPHLEDG 1077 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAA--------------KGIGDKINAM--LKQQ 1135 TP+DI+LNPLGVPSRMNIGQI E HLG AA K + D+++ + L++ Sbjct: 1078 TPLDILLNPLGVPSRMNIGQIFELHLGYAARELAKAKLIEACFDKKLADQLDTVFGLEKS 1137 Query: 1136 QEVAKLREFIQRAYDLGAD--VRQKVDLSTFSDEEVMR----LAENLRKGMPIATPVFDG 1189 + + ++ ++ +G + K + T + V++ ++L IATPVF+G Sbjct: 1138 KTQSLIKNLVEHMKSIGVTSLAQTKNRVRTIDIDIVLKQLGLTYDDL--AFKIATPVFEG 1195 Query: 1190 AKEAEIKELLKLGDL---PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 ++K ++ + T G+ +L DGRTGE FE+P++VG MYMLKL+H+VDDK+HAR Sbjct: 1196 VNMEDLKAIMSEAGIDPDKTEGKFKLIDGRTGEPFEKPISVGIMYMLKLDHMVDDKIHAR 1255 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 + G YS +TQQPLGGK+Q GGQRFGEMEVWAL+AYGAA+ L+E+LT+KSDDV GR Y Sbjct: 1256 AVGPYSKITQQPLGGKSQNGGQRFGEMEVWALQAYGAAHNLREILTIKSDDVRGRNMTYN 1315 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G EPG+PESF +L KE++ LG+ + + Sbjct: 1316 AIVKGLSIPEPGVPESFKLLTKELQGLGMTLNV 1348 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 100/420 (23%), Positives = 184/420 (43%), Gaps = 65/420 (15%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K +R+D+ K + L IQ++++++F+E++ LE S FPI+S +G + Sbjct: 15 KVVRRDYSKVHNKYNPLNLPGIQVNAYKQFLEKE------LEEIIGSYFPIKSPNGKYSV 68 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE-------QE 121 ++ ++ +P +E TY A L V L LV ++ GTVK I + + Sbjct: 69 EFHGMKILDPQITKEEASAESKTYDASLYVNLSLVNHQT----GTVKKISKKSAKSKAEG 124 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVL---YNARII 177 +Y +IPLMT+NG F++NG E+ +V+Q+ RSPG + + + K +S K Y + Sbjct: 125 IYFADIPLMTENGAFIVNGIEKFVVAQIVRSPGAYILNKSQVKLSNSRKRNQEGYICEVF 184 Query: 178 PYRGSWLDFEFDPKDNLFVRIDR------RRKLPATIILRALNYTTEQILDLFFEKVIFE 231 P +G+ + F + + R + T +L+A + +I ++F Sbjct: 185 PSKGTLMLFYIAENKDFVQAVVRDVGGESAKVFSITTLLKAFGLSEIKIKEIF------- 237 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV-KLIEVPVE 290 +N + + E + EA+ A+ IR +E D + K+ +P++ Sbjct: 238 -NNNDYILRSLESEFYNEKQILN-EAD-----------IAQLIRDIESDRISKVKSLPID 284 Query: 291 YIAGKVVAKDY-IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 +V Y +++ EL+ ++N +IE+L T+ G + + Sbjct: 285 QKWKNLVLDWYKLNQEKQELLNSSN-------------PNPTKIESLNTH---IGVVLRK 328 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 + + L R + + +S+ FF + RYDLS+ GR KF R L Sbjct: 329 LICEKAAKHVIQELSISTRSLDNVSQKEEISYQSILLQHFFQKKRYDLSSAGRHKFVRKL 388 >UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax=Heterosigma RepID=RPOB_HETCA Length = 1116 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 267/547 (48%), Positives = 370/547 (67%), Gaps = 13/547 (2%) Query: 393 DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 + Y L +GR+ NR L L+ DI ++ + R+ DDID L NRR Sbjct: 239 NSYSLGIIGRLNLNRRLGLNISTRVHTLTIHDIFGIIDFFLSARSFVP--DDIDDLRNRR 296 Query: 453 IRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS 512 IR+VGE+ +Q +GL R+ER + ER + ++P+ ++NA+PI +A++EFF SSQLS Sbjct: 297 IRAVGELITSQCEIGLNRLERNILERTNFSGSVRILPKTLVNARPIMSAIQEFFNSSQLS 356 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 +MDQ N LSE +KRRISALGPGGL +R RD+HPT YGR+CPIETPEG N+GL+ Sbjct: 357 HYMDQTNLLSETANKRRISALGPGGLNADRVTVAARDIHPTQYGRLCPIETPEGQNVGLV 416 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFV 630 ++L+ YA+ N GF++TPY +V +G + + + YL+A E+ N IA A+ D++G+ V Sbjct: 417 STLASYARINRNGFIQTPYFRVENGKILTQQPLIYLTA-EQENLKIAPADVKRDQDGYLV 475 Query: 631 EDLVTCRSKGESSLFSRDQ-VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 +D + R + ++ + + + VD++ VS Q++SV ASLIPFLEHDDANRALMGANMQRQA Sbjct: 476 DDFIVTRFQSKNFIITPSKLVDFISVSEIQIISVAASLIPFLEHDDANRALMGANMQRQA 535 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 VP L KP+VGTG+E VA DS + +A + G+V+YV + +I IK E E Sbjct: 536 VPLLYPRKPIVGTGIESQVAFDSRLVNIATKPGIVKYVSSQQIDIKNIEGEKIA------ 589 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y L KY SNQ+TC+NQ P V +G+ ++ G V+ADGP T GELALGQN+ VA+MPW G Sbjct: 590 -YKLIKYRPSNQDTCLNQRPLVWVGQSIKTGQVIADGPGTQSGELALGQNLTVAYMPWQG 648 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN+ED+ILVS+++ ++ FT+IHI+E + TK G + IT+DIP V E LDE+G Sbjct: 649 YNYEDAILVSDKLDIQNLFTSIHIEECETEVQQTKTGEQVITSDIPLVSEKNCKNLDENG 708 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 I+ +G V GDILVGK+TPKGE PE KLL+AIFG K D++DSSLRVP G+SG V+ Sbjct: 709 IIKVGKYVYPGDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMRDSSLRVPGGLSGRVL 768 Query: 930 DVQVFTR 936 D+++F + Sbjct: 769 DIKIFKK 775 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 144/293 (49%), Positives = 189/293 (64%), Gaps = 39/293 (13%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV ++V++A ++Q GDK+AGRHGNKGVIS+I P +DMP+ +GT VDI+LNPLGVP Sbjct: 783 GVGSKIRVFIAQISKLQVGDKIAGRHGNKGVISRILPHQDMPFLPDGTSVDIILNPLGVP 842 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRMN+GQI E LG+A GD++N K + E Q Sbjct: 843 SRMNVGQIFECLLGLA----GDQLNKRFK----ILPFDEMYQ------------------ 876 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E R+ N + + D AK+ L + G+I L DGRTGE+F+ P Sbjct: 877 --NEASRILINQK--------LKDAAKKQNKPWLFSAY---SPGKILLSDGRTGEKFDNP 923 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 V VG Y+LKL HLV+DK+HARSTG YSL+TQQP+GGK+Q GGQRFGEMEVWALEA+GAA Sbjct: 924 VLVGRSYILKLAHLVEDKIHARSTGPYSLITQQPVGGKSQNGGQRFGEMEVWALEAFGAA 983 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 YTLQE+LT+KSDD+ GR + +IV G + +PESF VL++E+ +LG++I Sbjct: 984 YTLQELLTIKSDDMQGRDDVLNSIVCGQEIPKSSIPESFKVLMRELNALGLDI 1036 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 7/108 (6%) Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 ++DIKE+ V++G+IPLMT G+F++NG E +Q+ R PG+++ ++ + ++ Sbjct: 101 LEDIKEK-VFIGQIPLMTSTGSFIVNGCEGY-RNQIIRCPGLYYKAE----FLNNNIVST 154 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 II RGSWL FEFD K+ +VRID+ +K+ L LN E+IL Sbjct: 155 VTIIAQRGSWLKFEFD-KNGYWVRIDKEKKISIFDFLEGLNINDEEIL 201 >UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax=Nephroselmis olivacea RepID=RPOB_NEPOL Length = 1109 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 281/620 (45%), Positives = 396/620 (63%), Gaps = 33/620 (5%) Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 AL +Y + P +P A + RYD+ VGR+K N+ L E L Sbjct: 237 ALFHLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLKLPVPEHVHTLR 296 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 D + LI + G+G+VDDIDHL NRR+R GE+ ++Q R+GL R+ER ++ R+S Sbjct: 297 PVDFLAATDYLIGLEYGRGQVDDIDHLKNRRVRCAGELIQSQLRIGLNRLERTMQGRISR 356 Query: 482 -GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 G+L + ++N KP+ AA++EFFGS+ LSQFMDQ NPL+E+THKRR+S+LGPGGL++ Sbjct: 357 PGELPGM--SSLMNPKPVMAALREFFGSNPLSQFMDQTNPLAELTHKRRLSSLGPGGLSQ 414 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 +RAG VR++HP+ YGR+CPIETPEGPN GLI S++ YA+ N+YG LE P+ +V +G V Sbjct: 415 DRAGMAVREIHPSQYGRICPIETPEGPNAGLIGSMATYARLNQYGGLECPFYQVVEGKVL 474 Query: 601 DEIH--YLSAIEEGNYVIAQANSNLDEEGHFV------------------EDLVTCRSKG 640 E +L+A E+ + V A LD+ V + + RS+ Sbjct: 475 YEFGPIFLTA-EQEDQVTVVAGDILDQRKLMVAVAEGRDPLDPAVRPTLPDRPLILRSRQ 533 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 E S V+Y+ ++ Q++SV SLIPFLEHDDANRALMG+NMQRQAVP L+ + P++ Sbjct: 534 EFHTGSFRDVNYVGIAPTQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPII 593 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM-YPGEAGIDIYN--LTKYT 757 GTG+E VA D+G + G+V YVDA+RIV+ ++ ++ + I N L Y Sbjct: 594 GTGLEAQVAADAGGVVQSPFEGIVVYVDATRIVVSTSKSKLALSKKRKIHESNVFLQVYQ 653 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RSNQ TCI+Q P + L PV RGD+LADG ST G++ALG+N+ VA+MPW GYNFED+IL Sbjct: 654 RSNQGTCIHQRPIIPLHTPVIRGDLLADGSSTSGGQIALGKNLLVAYMPWEGYNFEDAIL 713 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS--KLDESGIVYIGA 875 +SER++ +D +T++HI+ ++ TKLGPEEIT I + + L LDE GIV GA Sbjct: 714 ISERLIYDDLYTSLHIERYEVETQHTKLGPEEITKSIVHETDDKLPYRWLDERGIVMRGA 773 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 V GD+L+GK+TPK E +LTPE +L+ AIFG++ +D+SLRVP GV G V+DV++ Sbjct: 774 WVEPGDVLIGKITPKEEKELTPELRLVYAIFGKRPKGFRDTSLRVPQGVRGRVVDVRMI- 832 Query: 936 RDGVEKDKRALEIEEMQLKQ 955 RD +D + + + Q +Q Sbjct: 833 RD---EDTKVVHVYVCQQRQ 849 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/293 (47%), Positives = 189/293 (64%), Gaps = 45/293 (15%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K+V VY+ +R+IQ GDKMAGRHGNKG++S+I P +DMPY ++GTPVD+VLNPLGVPSRM Sbjct: 838 KVVHVYVCQQRQIQVGDKMAGRHGNKGIVSRIVPRQDMPYLQDGTPVDMVLNPLGVPSRM 897 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD--LGADVRQKVDLSTFS 1165 N+GQ+ E LG+A + +G ++ RA+D GA+ + + Sbjct: 898 NVGQVFECLLGLAGQRLGQQLKV----------------RAFDEMYGAEASRHL------ 935 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEA-EIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 V++ EA E+ L D G+ RL DGRTG+ F++ Sbjct: 936 --------------------VYNKLHEASEVTGHHWLFDPNHPGKSRLIDGRTGDMFDQA 975 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 VT+G YMLKL H VDDK+HAR+TG YSL+TQQPLGG+++ GGQR GEMEVWA E +GAA Sbjct: 976 VTIGQAYMLKLIHQVDDKIHARATGPYSLITQQPLGGRSKRGGQRLGEMEVWAFEGFGAA 1035 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 YTLQE+LTVKSDD+ GR ++ +V G E G PESF V+++E+++L ++I Sbjct: 1036 YTLQELLTVKSDDMQGRNEIMSAMVQGRQLPEMGTPESFKVMIRELQALCLDI 1088 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 112/210 (53%), Gaps = 16/210 (7%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 RKD P +L P L+SIQ DSF F+E+ GL V P+ L Sbjct: 7 RKDSQWTPFIL--PDLISIQRDSFLLFLER------GLATELSHVTPLTGSHFRITLCSH 58 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 YRL P +QE + +YSA L V + ++ GT ++ + Q V+MG+IPLMT Sbjct: 59 GYRLKRPKVSIQEAVYQATSYSAALYVN----VETNQSNLGT-QETQIQSVWMGDIPLMT 113 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 G F+ING+ RV+V+Q+ RSPG++F + H + ++ A II RGSW+ E D Sbjct: 114 SRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKH---RRMFQASIISNRGSWVRLETDVD 170 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQIL 221 ++VR+D+ +K+ I+L A+ + + I Sbjct: 171 GMIWVRMDKAKKISILIVLEAMGLSKKTIF 200 >UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Tax=Mollicutes RepID=RPOB_AYWBP Length = 1273 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 267/549 (48%), Positives = 362/549 (65%), Gaps = 32/549 (5%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ D+I + +++ G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ + Sbjct: 453 ITLSDVIASINYYLNLYENVGTVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKNIKDMI 512 Query: 480 SLGDLDTLM-PQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 S + P D++N + + +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ Sbjct: 513 STSKFGEVNGPGDLVNFTFLMSVIKTFFTNSRLSQFMDQINPLAELTQKRRVSALGIGGI 572 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV--TD 596 R+RAG EVRDVH +HYGR+CPIETPEGP+IGLI SLS YA+ N+YGF++TP+ KV D Sbjct: 573 NRDRAGIEVRDVHNSHYGRLCPIETPEGPSIGLITSLSTYAKVNKYGFIQTPFFKVLQQD 632 Query: 597 G--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G ++ +I YL+A +E +IA A LD F + + RS GE+ +F R+Q+ Y D Sbjct: 633 GKTTLSRDIDYLTADQEKEEIIASAGFVLDANNSFQDKKIIARSNGETGIFERNQITYAD 692 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS +Q+VSV S IPFLEH+DA+RALMGANMQRQAVP L + P+VGTG+E A DSG Sbjct: 693 VSPKQIVSVATSSIPFLEHNDASRALMGANMQRQAVPLLIPESPIVGTGVEYRAAKDSGC 752 Query: 715 TAVAKRGGVVQYVDASRIVI--KVNEDEMYPGEAGIDI---------------------- 750 +A+ G V YVDA +I+I K N+ G+ D Sbjct: 753 LIIARESGFVTYVDAQKIIITKKPNQTVSLNGKTLYDTTQEFTYTQAKVLYENNHKEYQA 812 Query: 751 -YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y L + +SNQ+T + Q P V LGE + GD+L GPST GELALG+N+ VAFM W G Sbjct: 813 EYTLINFAKSNQDTLVLQKPIVVLGEHINEGDILVSGPSTSQGELALGRNVTVAFMTWEG 872 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP--EEITADIPNVGEAALSKLDE 867 YN+ED+I++SE +V+ D +T+IHI + +R+ K G EEIT ++PNVG A+ LDE Sbjct: 873 YNYEDAIIMSEELVKHDVYTSIHIDKYEVQTRELKKGSGQEEITREVPNVGADAIKNLDE 932 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 GI+ G+EV GDILVGK+TP+G + +P EKL++ + GEKA + KDSSLRVP G G Sbjct: 933 RGIIIPGSEVKEGDILVGKITPQGNIEPSPSEKLIQIVIGEKAREYKDSSLRVPFGEGGI 992 Query: 928 VIDVQVFTR 936 V V F+R Sbjct: 993 VQSVHYFSR 1001 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 183/490 (37%), Positives = 266/490 (54%), Gaps = 92/490 (18%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV +G + GDILV G T +GE L + A + + +D+ + +S + Sbjct: 833 IVVLGEHINEGDILVSGPSTSQGELALG--RNVTVAFMTWEGYNYEDAII-----MSEEL 885 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI--RAVLVAGGVEA 986 + V+T + DK ++ E++ +++++ E+ + A + R +++ G Sbjct: 886 VKHDVYT--SIHIDKYEVQTRELKKGSGQEEITREVPNVGADAIKNLDERGIIIPGSEVK 943 Query: 987 E------------KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE-----LKHEFEKKL 1029 E ++ P ++ +++ + ++ ++ + L + E H F +K Sbjct: 944 EGDILVGKITPQGNIEPSPSEKLIQIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSRK- 1002 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 GD L GV + ++V++A KR+I GDKMAGRHGNKGVIS+I P ED+PY Sbjct: 1003 --------NGDVLPAGVNENIRVFIAKKRKINEGDKMAGRHGNKGVISRILPKEDLPYMA 1054 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 +GTP+DI+LNPLGVPSRMNIGQILE HLGMAAK +G K+ + L+E ++ A Sbjct: 1055 DGTPIDIMLNPLGVPSRMNIGQILEIHLGMAAKKLGIKVATPVFDGVNDYDLKEIMKEA- 1113 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 +L D + M L + R G P Sbjct: 1114 NLEPDGK-------------MVLYDG-RTGEP---------------------------- 1131 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 YD R ++VG MYM+KL+H+VDDK+HAR+ G Y+LVTQQP+GGK Q GGQR Sbjct: 1132 ---YDSR--------ISVGVMYMVKLSHMVDDKLHARNVGPYTLVTQQPMGGKVQNGGQR 1180 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 FGEMEVWAL AYGAA+TLQE+LTVKSDD+ GR K Y IV G +P +PESF V +KE Sbjct: 1181 FGEMEVWALYAYGAAHTLQEILTVKSDDIVGRNKTYSAIVQGTQLPKPSIPESFRVFIKE 1240 Query: 1330 IRSLGINIEL 1339 ++SLG+ +EL Sbjct: 1241 LQSLGLYVEL 1250 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 176/343 (51%), Gaps = 34/343 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F+ ++G++ + PI+SY+G+ + Sbjct: 10 KKAQRRNYSKTIYDVDLPNLIEIQNQSFDWFL------KHGIKELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + Y L P + ++E +I+ ++Y A L VK L + K+ + + E+ Sbjct: 64 IHFDDYFLTPPKYSIEETKIKDISYVAQLFVKTTL-------ENVLTGETKQSNILLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+INGTERV+VSQ+ RS V+F + + + +Y+ ++IP RG+W+++E Sbjct: 117 PLMTSTGTFIINGTERVVVSQIVRSASVYFAGNFDIKLN--RTIYSGQVIPSRGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ----------ILDLFFEKVIFEIRDNKL 237 K+ L+ ++DR +K+P + + AL + +++ ILD F+K DN L Sbjct: 175 EGSKEILYAKLDRSKKIPLSNFIYALGFDSKEAIENVFGKSAILDSVFDKETDMDSDNAL 234 Query: 238 QMELVPERLRGETASFDIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 +EL + +GE D + +++ +K + + K L Y+A Sbjct: 235 -VELYSKIRQGEKVPVDTARDFIRTRLFDQKKYDLAKVGRYKFNKKLDVLTRAENTYLAC 293 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 D+++ E++ A + L+ + +A L Q+ H ++ +F Sbjct: 294 -----DFVNPENQEIMIAQDELLTKEKIAILKQNRHFLLQEIF 331 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D +ALVE+Y +R GE + A F + +YDL+ VGR KFN+ L Sbjct: 229 DSDNALVELYSKIRQGEKVPVDTARDFIRTRLFDQKKYDLAKVGRYKFNKKL 280 >UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain (Partial sequence n terminus) protein (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5RWZ2_RALSO Length = 587 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 254/441 (57%), Positives = 331/441 (75%), Gaps = 6/441 (1%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR V VP+LL+ Q+ S+ +F+++ GL+AAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + +++VSY L P FDV+ECQ RG+T+ + LR K+RL+I +RE P VK+ Sbjct: 61 FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT-KVKE 119 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKEQEVYMGEIPLMT G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 120 IKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 179 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDF+FDPKD L+ R+DRRRK+P TI+L+++ T EQIL FF F ++ + Sbjct: 180 IPYRGSWLDFQFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDG 239 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ME VPERLRGE A FDI + NGKV +EK +RI A+HIR L+ KLI VP +Y+ G+ Sbjct: 240 ALMEFVPERLRGEVARFDISDKNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDYLLGR 299 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 V+AK+ +D TGE++ AN EL+ +L KL +G K I+TL+TNDLD GPY+S+TLR D Sbjct: 300 VLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTLRTDD 359 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T D+ +A + IYRMMRPGEPPT +A E+LF+ LF++ED YDLS VGRMK N L R E Sbjct: 360 TVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLNRSEGT 419 Query: 416 GSGILSKDDIIDVMKKLIDIR 436 G +L+ DDI+D +K L+++R Sbjct: 420 GPMVLTDDDILDTIKLLVNLR 440 >UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Tax=Bacteria RepID=RPOB_MYCPN Length = 1391 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 262/599 (43%), Positives = 393/599 (65%), Gaps = 37/599 (6%) Query: 384 LFENL--FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 L+E+L + + D +D+S N + L + I S D I + +I+I + G+ Sbjct: 467 LYESLDVYVNNDNFDVSVPVVGIHNDNDLNKAITLS------DFIASISYVINIPSAIGK 520 Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD------------------ 483 DDIDHLGN+R++ + E+ ++ G+ R+ER +KE+L++ D Sbjct: 521 YDDIDHLGNKRVKLINELISSRLESGITRMERFLKEKLTIADGVNRGQQINEEGQVIEQA 580 Query: 484 -LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 L + +IN+KPI +++FF + QL+QF+D NPLSE+++KRRISA+GPGG++RE Sbjct: 581 EKKELTIKSLINSKPIQIVIRDFFNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISRED 640 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 ++RDVH + YGR+CPIETPEG NIGLI SL+ +A+ +E GFL PYRK+ +GV+TDE Sbjct: 641 PNLDIRDVHYSQYGRICPIETPEGMNIGLIMSLASFAKIDENGFLMAPYRKIKNGVITDE 700 Query: 603 IHYLSAIEEGNYVIAQANS--NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + YL+A+ E ++IA+ +S N+DE ++ + R + L+ ++DY+DV+ QV Sbjct: 701 VEYLTALREDEHIIAEISSLVNIDENNKILDKEIIGRYRSMQGLYDPSKIDYIDVAPHQV 760 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VS+G+SLIPFLE+DD+ RALMG NMQRQA P ++ P+VGTG E +A DSG+T +A Sbjct: 761 VSIGSSLIPFLENDDSARALMGTNMQRQAYPLIKPYAPVVGTGQEYKIARDSGLTMLAPC 820 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G V+YVD S+I I+ + E + +L K+ RSNQNTC N +P V G+ V + Sbjct: 821 SGTVKYVDNSKITIESDSGEQH-------TLDLIKFERSNQNTCYNHVPLVEKGQRVTKD 873 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +V+ADGP+ + EL+LGQN+ VAF WNGYN+ED+I++SER+V++D T++ I E Sbjct: 874 EVIADGPAVNKSELSLGQNVLVAFTTWNGYNYEDAIVISERLVKDDVLTSLTINEYVAQC 933 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 TK G E+IT DIPNV +A LDE+GI+ +GAEV GD+LVGKV+PKG+ +++PEEK Sbjct: 934 LSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEK 993 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALEIEEMQLKQAKK 958 L +AIF E +V+DSSL++P+G G V V+ F+ +G E + +E+ ++ + Q +K Sbjct: 994 LFKAIFPESVQNVRDSSLKLPHGGDGIVSCVKRFSIANGNELNDGVIEMIKVYVVQKRK 1052 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 165/331 (49%), Positives = 221/331 (66%), Gaps = 23/331 (6%) Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 KR I G++L GV++++KVY+ KR+IQ GDK+AGRHGNKGVISK+ P+ DMP+ E+G Sbjct: 1025 KRFSIANGNELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPHLEDG 1084 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK--INAMLKQQQEVAKLREFIQRAY 1149 TPVDI+LNPLGVPSRMNIGQI E HLG AA + + I+A ++ A E Q Y Sbjct: 1085 TPVDILLNPLGVPSRMNIGQIFEMHLGYAAHNLAKRMLISACFDDKKAQALSTEINQPQY 1144 Query: 1150 DLG---ADVRQKVDLSTFSDEEVMRLAEN-------LRK-GMP-------IATPVFDGAK 1191 L ++ ++ DE+ N L++ GM +ATP+F G Sbjct: 1145 KLDRLITGLKAQITNRGLKDEQAALAQLNNGDIALVLKEIGMSFDDLHFKVATPIFQGVN 1204 Query: 1192 EAEIKELLKLGDLP---TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 ++++++ L T G+ +L DGRTG FE+P+++G MY++KLNH+VDDK+HAR+ Sbjct: 1205 FQDLQDIMDEAGLKPAETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIHARAV 1264 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNI 1308 G YS +TQQPLGGK+Q GGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR K Y I Sbjct: 1265 GPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKAYAAI 1324 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 V G EPG+PESF +L KE++ L +++ Sbjct: 1325 VKGAAFPEPGIPESFKLLTKELQGLALSVSF 1355 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 111/237 (46%), Gaps = 34/237 (14%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 R+ +GK P L IQ+ S+Q F++ D LE + FPI+S + + + Sbjct: 18 RRYYGKIATDFVQPNLADIQIRSYQTFLDHD------LENLIAAYFPIKSPNDRYTINFK 71 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE---------- 121 R P + + + TY + L L+ ++ GT+K ++ + Sbjct: 72 GLRRTAPERNEAQSRSESKTYEIGIYADLELI----DSATGTIKKPRKSKKNSATSSVDG 127 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVL---YNARII 177 V++ +PL+T +G F++NG E+ +++Q+ RSPG++ + K SS K + Y ++ Sbjct: 128 VFLTNLPLITRDGVFIVNGIEKFVIAQITRSPGIYMLTKSQLKLSSSRKRVQEGYVCEVL 187 Query: 178 PYRGSWLDFEFDPK---DNLFVRIDRR-------RKLPATIILRALNYTTEQILDLF 224 P GS + K ++ FV+I R + P T +L+A + ++IL +F Sbjct: 188 PANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGMSGKEILKVF 244 >UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN02_HODCD Length = 1267 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 317/871 (36%), Positives = 469/871 (53%), Gaps = 53/871 (6%) Query: 502 VKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 V + F SS Q+ DQ N LSE++H+ R++ +G GG+ A RDV H+G+VCPI Sbjct: 418 VSKLFRSSSACQYADQVNSLSELSHRLRLTCMGGGGVNARSADTRSRDVRKWHFGKVCPI 477 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 E+PEG +IGL+ L++YA+ G + T + K G++++++ L+ + + IA + Sbjct: 478 ESPEGQSIGLVLQLAMYARVEASGHIATMFAKSRRGLISNQMLALNCFSQQAFSIAIFGA 537 Query: 622 NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 + V C+ ++ + VD + Q+ S +LIPFLEH+DA RALM Sbjct: 538 S--PASARVMSFKACKP----AMCAISAVDLWPATNAQLFSPAVNLIPFLEHNDATRALM 591 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 +NM +QA+P PLVGTG ERAV + +G +A + VV DA+++V+ + Sbjct: 592 ASNMLKQALPLAEPQAPLVGTGEERAVMLAAGHNLLADQHCVVVRADAAQVVVYCPCADA 651 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 Y Y + + TRSNQ C V + ++ GDV+A+ S+D GE++LG N+ Sbjct: 652 YKA------YLVPEPTRSNQGVCRRLRVVVEPNQVLKAGDVVAECQSSDNGEMSLGANLL 705 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 VAFM WNG+N+EDSIL+SE V+ ++H+ +L T G E +T ++P V E Sbjct: 706 VAFMCWNGFNYEDSILLSEAVIARGLLDSLHVLKLKAKVLRTAFGDELVTNELPMVAEKH 765 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTP--------------------------KGETQL 895 + L E G+V +G V D+LVGK++P Sbjct: 766 KAHLSEQGVVSVGDTVCEHDVLVGKLSPVDYADSLDVATADAVATAGADDGGDDGDSGGD 825 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGV-SGTVIDVQVFTRDG-VEKDKRALEIEEMQL 953 L GE VK +SLRVP GV +VIDV + + + AL+ +L Sbjct: 826 DGLSVTLVNDMGENIRYVKSTSLRVPTGVECASVIDVSFASCEAEASLGESALDACVKEL 885 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 ++ + L G ++ AV G K D LE ++ + Q + Sbjct: 886 DLIQRRYARRL-----GKVAKWAAVGFDGANACSKPD---HGLVLEAKSSNAQAQQAISL 937 Query: 1014 LAEQYD-ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 L + Y E+ F + A +I+ + VL + V L V++ I+ GDK++GRHGN Sbjct: 938 LRQLYACEVDALFARASAAASARISCDGPNSASVLDEITVTLLVRKSIKAGDKVSGRHGN 997 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KGVIS++ P EDMP+ +GTP+DIVLNPL VPSRMNIGQILE LG+ +G + ++ Sbjct: 998 KGVISRVAPAEDMPHLADGTPIDIVLNPLSVPSRMNIGQILEARLGLVGLALGAEFERVV 1057 Query: 1133 KQQQ--EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 Q + + RE ++ A + + +DL S V+ LA L +G+ + P F Sbjct: 1058 DACQVADASSERE-LEGAKSKISSLFPSLDLRRASASRVLALARKLSRGVGLECPPFCHL 1116 Query: 1191 KEAEIKELLK-LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG 1249 EA IK L + G L SG+++L+DG TG F++ VG +Y+LKLNHLVDDKM+AR+TG Sbjct: 1117 SEACIKALCRRAGALDASGRLQLFDGVTGLPFDQQTAVGSIYVLKLNHLVDDKMYARATG 1176 Query: 1250 SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV 1309 YS+VTQQPL GKA GGQR GEMEVWAL++YG +Y L+E LT K DDV R M +I Sbjct: 1177 PYSMVTQQPLKGKANKGGQRLGEMEVWALQSYGVSYMLKEALTAKCDDVAARHVMASSIA 1236 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++E ES +L++E+ SL ++ E Sbjct: 1237 GCAPRVESSWGESLLLLVREMCSLCVDFRFE 1267 >UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Tax=cellular organisms RepID=RPOB_PHATR Length = 1389 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 266/576 (46%), Positives = 368/576 (63%), Gaps = 24/576 (4%) Query: 371 RPGEPPTR-EAAESLFENL-----FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 R EP +R S F+N+ F Y L VGR+K N L + E ++ +D Sbjct: 527 RLSEPLSRFNLGLSYFKNISEFSRIFDPTYYRLGRVGRLKINSRLNLKMSERLQTITYED 586 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL 484 I + KLI++ K DDIDHL NRR+RSVGE+ +N FR+G R+ R ++ + + D Sbjct: 587 IFAITDKLINLTISKTVQDDIDHLKNRRVRSVGELLQNLFRIGFQRLGRKLRNQTNKIDS 646 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 L+ +++NA +++EFFGSSQLSQ++DQ NPLS +TH+RR+S LGPGG R+R Sbjct: 647 GQLLSFNIVNA-----SIREFFGSSQLSQYLDQTNPLSSLTHRRRVSGLGPGGFDRDRIS 701 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG--VVTDE 602 F VRD+HP+HYGR+CPIETPEG N+GLI SL+ A+ N+ GFLETP+ +V +G V T + Sbjct: 702 FAVRDIHPSHYGRICPIETPEGQNVGLIASLTTCARVNKSGFLETPFWRVINGKVVKTGQ 761 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 YL+A E Y IA A+ +++ + ++++ R K + + +VD++ +ST QVVS Sbjct: 762 PVYLTADIEDFYKIAPADIATNKDNYLTKNVIPVRYKQDFVNVTPSEVDFIAISTIQVVS 821 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 V ASLIPF EHDDANRALMG+NMQRQ+VP L KP+VGTG+E +A+DSG+T + G Sbjct: 822 VAASLIPFFEHDDANRALMGSNMQRQSVPLLLPQKPIVGTGLENQIAIDSGMTLNSYSNG 881 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDI-YNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 VV V A++IV+ + G + Y L KY RSNQ TCIN P V GE V+ G Sbjct: 882 VVSSVTANKIVVN--------DKTGKRLTYKLQKYLRSNQQTCINHRPIVWKGEQVKSGQ 933 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC-VS 840 +L DGP+ EL+LGQN+ + +MPW GYNFED+IL++ER+V +D FT+IHI+ + Sbjct: 934 ILTDGPAITSSELSLGQNVLIGYMPWQGYNFEDAILINERLVYDDVFTSIHIERYKIEID 993 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 R++ E T +IPN+ + L++ GIV +G V GDILVGKV ++ PE K Sbjct: 994 RNSD-TLERTTKNIPNLNPREIRHLNDDGIVTVGTFVRPGDILVGKVISNNTSEQLPESK 1052 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 LLRAIFG KA VKD+S R+ +G G VI+ F R Sbjct: 1053 LLRAIFGAKAKGVKDNSYRMSDGEYGRVIETVTFNR 1088 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 178/484 (36%), Positives = 256/484 (52%), Gaps = 64/484 (13%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 ++ IV+ G +V G IL G E L + +L + + +D+ L Sbjct: 917 INHRPIVWKGEQVKSGQILTDGPAITSSELSLG--QNVLIGYMPWQGYNFEDAIL----- 969 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQ------ILEAGLFS 973 ++ ++ VFT +E+ K ++ L++ K++ E++ I+ G F Sbjct: 970 INERLVYDDVFTSIHIERYKIEIDRNSDTLERTTKNIPNLNPREIRHLNDDGIVTVGTFV 1029 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 R +LV + ++LP + L + K + E E +R Sbjct: 1030 RPGDILVGKVISNNTSEQLPESKLLRAIFGAKAKGVKDNSYRMSDGEYGRVIETVTFNRR 1089 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 K+T + + V++A R+IQ GDK+AGRHGNKG+IS+I +DMP+ +GTP Sbjct: 1090 TKLTYK-------FEKIYVFIAQIRKIQVGDKIAGRHGNKGIISRILSRQDMPFLPDGTP 1142 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 +DI+LNPLGVPSRMN+GQ+ E LG+A GDK+NA K L Sbjct: 1143 LDILLNPLGVPSRMNVGQLYECLLGLA----GDKLNARFK----------------ILPF 1182 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 D +++S + +R A + + P G++ L Sbjct: 1183 DEMYGLEISRILINKKLRQASIAKNESWLFNPY-------------------APGKMVLI 1223 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTG++FE PVTVG YMLKL HLVDDKMHAR+TG YSL+TQQPL GKAQ GGQRFGEM Sbjct: 1224 DGRTGKEFENPVTVGNAYMLKLIHLVDDKMHARATGPYSLITQQPLRGKAQHGGQRFGEM 1283 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALE +GAA+TL+E+LT+KSDD+ GR + IV G + G+PESF VLL E+RS+ Sbjct: 1284 EVWALEGFGAAFTLKELLTIKSDDMQGRNETLNAIVKGQQIPKFGIPESFKVLLHELRSI 1343 Query: 1334 GINI 1337 G+++ Sbjct: 1344 GLDM 1347 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 20/145 (13%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV----SYRLGEPV 79 +P L++Q SF FI Q GL IQ +S N+E YV Y L +P Sbjct: 7 LPDFLAMQRISFCWFITQ------GLTEELALFSRIQDFSQNTE--YVMFGEEYSLIKPS 58 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY-MGEIPLMTDNGTFVI 138 + + + YS R +L + I E V I+ + + +PLMT + TF+I Sbjct: 59 YSL----LIARKYSGNYRAQLVIPI---EVRNKVVNSIRYHNQFPIITLPLMTTDATFII 111 Query: 139 NGTERVIVSQLHRSPGVFFDSDKGK 163 NG ERVIVSQ+ RSPGV+F+ +K + Sbjct: 112 NGCERVIVSQIIRSPGVYFEKNKNQ 136 >UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Tax=Mycoplasmataceae RepID=RPOB_UREP2 Length = 1434 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/525 (46%), Positives = 347/525 (66%), Gaps = 39/525 (7%) Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD-------------LDT 486 GE DDIDHLGN+R++ + E+ + + R+E+ + E+L++ D +DT Sbjct: 530 GEFDDIDHLGNKRLKLIHELLRARIATSMARIEKFINEKLAISDGSSNNITNVNDKGIDT 589 Query: 487 LMPQD-------------------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 + ++ +IN K + VK+FF S QL QF+DQ NPL+E+T+K Sbjct: 590 ELDREIEESDMSDEEKKKAISVKSIINTKQFQSLVKDFFNSHQLIQFIDQQNPLAELTNK 649 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RRISA+GPGG++RE ++RDVH +HY R+CPIETPEG NIGLI SL+ A+ +E GF+ Sbjct: 650 RRISAMGPGGISREDPNLDIRDVHHSHYSRICPIETPEGMNIGLIMSLASLAKVDENGFI 709 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 PY V DGVV ++ YL+A E+ NY+IA+++ LDE +++ V R +G + LFS Sbjct: 710 VAPYYVVEDGVVKEDYKYLTAHEDDNYIIAESSVQLDENKRILDEQVVARYRGSTGLFSP 769 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 ++VD++D+ +QVVS+ AS IPF+E+DD RALMG+NMQRQA P ++ P+VGTG E Sbjct: 770 NEVDFIDIVPKQVVSIAASAIPFIENDDGARALMGSNMQRQATPLIKPYAPIVGTGTEFK 829 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 +A DSG+ VAK GVV++VD+ +I+I+ + D++ D Y L KY +SNQ+TC NQ Sbjct: 830 IAHDSGMAVVAKNDGVVEFVDSQKIIIRNDNDKL-------DDYKLIKYRKSNQDTCNNQ 882 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 +P V +G+ V + + + DGP+ GELALG+N+ V + W GYNFED+I++SER+V +D Sbjct: 883 IPIVKVGQRVHKSETIGDGPAMQNGELALGRNILVGYTTWRGYNFEDAIIISERLVDQDV 942 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI E TK G EEIT D+PNV + A LD GIV +GAEV GD+LVGK Sbjct: 943 FTSIHIDEHTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKT 1002 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 TP+G + PE++LL+ IFG+K+ VKDSSL+V +G G V V+ Sbjct: 1003 TPRGNVETAPEDRLLQTIFGDKSKTVKDSSLKVKHGQEGIVAAVK 1047 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 174/385 (45%), Positives = 244/385 (63%), Gaps = 27/385 (7%) Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 VLV ++ P DR L+ D+ K + L ++KH E + A +R + Sbjct: 997 VLVGKTTPRGNVETAPEDRLLQTIFGDKSKTVKDSSL-----KVKHGQEGIVAAVKRIKS 1051 Query: 1038 ---QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 G +L V++I+KVY+ KR+IQ GDKMAGRHGNKG++SK+ PI+DMP+ ++GTP+ Sbjct: 1052 SDENGSELPDDVIEIIKVYIVQKRKIQVGDKMAGRHGNKGIVSKVVPIQDMPFLKDGTPL 1111 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ-------EVAKLREFI-Q 1146 DI+LNPLGVPSRMNIGQILE HLG AA IG K + Q + + E I + Sbjct: 1112 DIMLNPLGVPSRMNIGQILELHLGYAAAEIGKKQLIQIAIDQLGYEKYISLFGINEIIAK 1171 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRK--------GMPIATPVFDGAKEAEIKEL 1198 + Y+ +++ + D +++ + L++ G+ I+TPVFDGA +I + Sbjct: 1172 KLYENISNLIKHKQAKQAKDIDLIDVTIILKELGLSYDDIGIKISTPVFDGANHDDIVSI 1231 Query: 1199 LKLGDLP---TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 + ++ G+ LYDGRTGE F+ ++VG YMLKL+H+VDDK+H+RS G YS +T Sbjct: 1232 MNEANIDIENNKGKQVLYDGRTGEPFDGLISVGLTYMLKLDHMVDDKIHSRSVGPYSKIT 1291 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM 1315 QQPLGGK+Q GGQRFGEMEVWALEAYGAAY L E+LT+KSDDV GR + Y I+ G+ + Sbjct: 1292 QQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLLEILTIKSDDVQGRNQAYNAIIKGHDVV 1351 Query: 1316 EPGMPESFNVLLKEIRSLGINIELE 1340 GMPESF +L K+++ LG+ I +E Sbjct: 1352 ADGMPESFKLLTKQMQGLGLCITVE 1376 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 125/242 (51%), Gaps = 32/242 (13%) Query: 4 SYTEK----KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI 59 +YTEK K +R+D+ K + P LL IQ++SF++F+E+D L+ S+FP+ Sbjct: 6 NYTEKFITDKVMRRDYSKIKSNFEGPNLLEIQVESFKRFMEKD------LKEVISSIFPL 59 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK- 118 +S G L + ++ +P D C+ G T+ P+ + L L + G VK + Sbjct: 60 KSPQGKYTLAFKGLKIKQPTKDESACRDEGKTFETPIYIDLELT----DNYTGEVKRAQR 115 Query: 119 -----EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVLY 172 E +Y+G IP MT+ GTFVING E+ ++SQ+ RSPG++ K + S K L+ Sbjct: 116 NTKTGEDGIYLGAIPKMTEKGTFVINGIEKFVISQIVRSPGIYVLGKSSIKLNGSRKRLF 175 Query: 173 NARII---PYRGSWLDFEFDPKDNLFVRI-------DRRRKLPATIILRALNYTTEQILD 222 +I P +G+ + + PKD ++I D + T +L+A T+ +IL Sbjct: 176 EGKICEIYPSKGTLM-LGYIPKDRHNIQIVARDSSGDNAQTFSVTTLLKAFGLTSAEILK 234 Query: 223 LF 224 +F Sbjct: 235 IF 236 >UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae RepID=D1J787_ECTSI Length = 1139 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 272/582 (46%), Positives = 364/582 (62%), Gaps = 44/582 (7%) Query: 395 YDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 YDL VGR+K N+ L L+ DI+ V+ KLI I ++DDID+L NRR+R Sbjct: 273 YDLGEVGRIKLNKKLDIGLPLSRRTLTSLDILKVIDKLIHISFHNEKLDDIDNLENRRVR 332 Query: 455 SVGEMAENQFRVGLVRVERAVK--ERLS------------------------------LG 482 SVGE+ + Q RV L R+++ + E+L+ LG Sbjct: 333 SVGELLQLQVRVALGRIKKKINTDEKLTAEMFRIKKNKKRAGMKNSTPKKNKSTKKNQLG 392 Query: 483 -----DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 +TLMP +++N+K +++ ++EFFG S LSQ+ D+ N L+++THKRRIS+LGPGG Sbjct: 393 RKKKPQKETLMPNELLNSKVLTSVIREFFGLSPLSQYFDEVNALAQLTHKRRISSLGPGG 452 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L E F RD+HPT YGR+CPIETPEG GLI SL+ +A+ N YGF+ TP+ +V G Sbjct: 453 LNSEHVSFAARDIHPTQYGRLCPIETPEGQKAGLIASLATHARINNYGFITTPFFRVYKG 512 Query: 598 VVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 V E+ YL+A +E Y +A + L + F +V RS E V+++ V Sbjct: 513 KVLYELGPVYLTAEQEATYNVASGDVLLTRDNFFRTKIVPVRSFNEFITVDAINVNFLAV 572 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 S Q+++VGASLIPFLEHDDANRALMG+NMQRQAVP L KP++GTG+E +A DS V Sbjct: 573 SPIQILAVGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIEHQIAADSQVV 632 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 + G++ V + RI I D Y G + +Y L KY RSNQ T INQ P + GE Sbjct: 633 LINLLDGIIDSVCSDRITII---DNKYLGSS--KMYFLDKYRRSNQETIINQKPLIWNGE 687 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 VE G ++ADGP T+ GELALGQN+ VA+MPW+GYNFED+ILVS+R+VQ+D FT+IHI++ Sbjct: 688 IVEPGQIIADGPGTEGGELALGQNLTVAYMPWDGYNFEDAILVSDRLVQDDLFTSIHIEK 747 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 D EEIT IPN+ E + LD +GI+ G V GGDILVGK+TP E Sbjct: 748 YELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDILVGKITPILEEDE 807 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 PE KLLRAIF ++ + +DSSLRVPNGVSG VI++Q +R+ Sbjct: 808 LPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASRE 849 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 147/300 (49%), Positives = 198/300 (66%), Gaps = 39/300 (13%) Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 +GD+L G+ + V + +A ++I+ GDK++GRHGNKGVISKI P +DMP+ +GT VD++ Sbjct: 850 KGDNLGSGIYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPFLPDGTIVDVI 909 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNPLGVPSRMN+GQI E LG A GD +N +R + D Sbjct: 910 LNPLGVPSRMNVGQIFECLLGFA----GDYLN----------------RRFKVIPFDEMY 949 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 K + S + ++ A AKE + L + + G++ L DGRT Sbjct: 950 KPNASRILINKALKKA----------------AKETDKCWLF---NKFSPGKVLLTDGRT 990 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ F+ V VG Y+LKL HLVD KMHARSTGSYSLVTQQPLGGK++ GGQRFGEMEVWA Sbjct: 991 GDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWA 1050 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 LEA+G AYTLQE+LT+KSDD+NGR +++ I+ G++ EPG+PESFNVLL+E+ +LG+++ Sbjct: 1051 LEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGHNIPEPGIPESFNVLLRELNALGLDM 1110 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 5/97 (5%) Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 +++ V+ GEIPL+T+ GTF+ NG ERVI+SQ+ RSPGV++ + K+ Y II Sbjct: 108 RKERVFFGEIPLLTEKGTFIFNGCERVIISQIIRSPGVYYK----QIIKEKKIFYEGTII 163 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 GSWL FE + + ++V+ D++ K+P L L+ Sbjct: 164 SKYGSWLTFELE-YNLIWVKFDKQYKIPINWFLVGLS 199 >UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BEC3_9CHLO Length = 1115 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 240/595 (40%), Positives = 358/595 (60%), Gaps = 50/595 (8%) Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 F + YDLS +GR + N L + L+ DI+ + LI + +G G++DDIDHL Sbjct: 241 FMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYLIKLEHGFGKIDDIDHL 300 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 NRR+R+ GE+ +NQ +GL+R+E+ ++E+L + ++ Q++I K I+ A++EFFGS Sbjct: 301 KNRRVRASGEILQNQISLGLIRLEKLIREKLKKNRKNIIL-QNLITTKAINGALREFFGS 359 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQLSQFMDQ NPL+EITHKRR++++GP G++RE AG +R +HPTHYGR+CPIETPEGPN Sbjct: 360 SQLSQFMDQTNPLAEITHKRRLTSIGPNGVSRETAGMALRGIHPTHYGRICPIETPEGPN 419 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLDEE 626 GL+NS++ YA+ N GFLETP+ K G + ++ + SA EE ++ ++ N + Sbjct: 420 AGLVNSITSYAKINSKGFLETPFYKTFKGQIQKKLKPLFFSAEEEETKILISSDLNSSKF 479 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 + + R E+ +DQV+Y +S Q++S+ SLIPFLEH+DANR+LMG+NMQ Sbjct: 480 YFLPKKKIPTRFGTETQQTKKDQVEYSAISQIQMISIATSLIPFLEHNDANRSLMGSNMQ 539 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI-----KVN---- 737 RQAVP ++ ++P+VGTG+E + DS + G + YV +I++ K N Sbjct: 540 RQAVPLIKPERPVVGTGLEGRIISDSDHALQTQFTGYISYVSGKKIIVYTIKKKKNLSLN 599 Query: 738 ----------EDEMYPGEAGIDIYN----------------------------LTKYTRS 759 + ++P + + N L + RS Sbjct: 600 LQKSTKNSFFSEYLFPKKLKKNSTNKIKKNPLIKRNTLFIEIIKNSIKKNEILLHTFQRS 659 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 NQ T + + G +++ D+LAD + GE+ALG+N+ +A+MPW GYNFED++L++ Sbjct: 660 NQETLLTHYASICEGNWIQKNDLLADSSCSLKGEIALGKNILIAYMPWEGYNFEDAVLIN 719 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ER+V ED +T+IHI+ RDTK G E+IT +P V + L LDE GI IG+ V Sbjct: 720 ERLVYEDIYTSIHIERFELEIRDTKFGLEKITNKLPEVPFSQLLHLDERGIAKIGSWVEE 779 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 G IL+GK+TP + L P EKLL I G+K +DSSLR P G++G +I V++ Sbjct: 780 GTILIGKITPIKKKSLIPHEKLLYDIIGKKTPTTRDSSLRAPKGLTGRIIHVEIL 834 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/289 (48%), Positives = 184/289 (63%), Gaps = 42/289 (14%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V +Y+A KR+IQ GDK++GRHGNKG+ISKI P +DMP+ +GTPVD+VLNPLGVPSRMN+ Sbjct: 851 VHIYIAEKRKIQVGDKISGRHGNKGIISKILPRQDMPFLPDGTPVDMVLNPLGVPSRMNV 910 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQILE LG+A GI L QQ ++ E G + + + Sbjct: 911 GQILECLLGLA--GI------FLNQQYKITPFDE------KYGPEASRSL---------- 946 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT-SGQIRLYDGRTGEQFERPVTVG 1228 VF EA +K K P G+I+L+DGR G+ F++ T+G Sbjct: 947 ----------------VFSKLYEARLKTGQKWLFNPNFPGKIQLFDGRNGKCFDQHTTIG 990 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE +G+AY LQ Sbjct: 991 QAYILKLVHLVDDKIHARSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGFGSAYILQ 1050 Query: 1289 EMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 E++T+KSDD GR ++ N + N + G PE+F VL+KE++SL ++I Sbjct: 1051 ELITIKSDDTKGRHQVI-NAILKNKSISLGTPEAFKVLIKELQSLCLDI 1098 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 22/202 (10%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P + IQ +SF +++ GL ++ PI + N EL + Y+L P F Sbjct: 3 LPDFIEIQRNSFNALLKK------GLIKEIKNRSPITNIKKNIELFFYPELYQLNPPNFT 56 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + ++ TY+ L + ++LV T K IK Q V + PLMT G F+ING+ Sbjct: 57 NKTAILKAKTYACKLYIPVQLV-------NNTSKKIKTQWVLLTNFPLMTKRGHFIINGS 109 Query: 142 ERVIVSQLHRSPGVFFDS--DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 R+I++Q+ RSPG+++ DK K K Y A +I +RG+WL E D K ++ R+ Sbjct: 110 PRIIINQIIRSPGIYYQEVFDKKK-----KRKYYADLISFRGTWLRLEIDKKKAIWARMK 164 Query: 200 RRRKLPATIILRALNYTTEQIL 221 + K+ I L+A+ T + I Sbjct: 165 KTPKISILIFLQAMGLTNQLIF 186 >UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEK8_PEDMN Length = 1157 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 253/618 (40%), Positives = 366/618 (59%), Gaps = 55/618 (8%) Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 E + F + YDL +GR++ N+ L+ +DI + LI + G Sbjct: 263 EMGKKFLMKKFRNPRSYDLGFIGRLRLNKRFGLSIATSYRQLTAEDIFHSVNLLISVSQG 322 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL---GDLDTLMP--QDMI 493 +DDIDHL NRR+RS+GE+ + Q + L+R+E+ +++R S ++ ++ + I Sbjct: 323 VASLDDIDHLENRRVRSIGELLQIQLGLALLRLEKMIRDRSSFLLENNVSSVAKDIRSFI 382 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 + K ++ A++EFFGSS LSQF+DQ NPL+E+THKRR+++LGP G++RE AG VR +HP+ Sbjct: 383 STKALNGAMREFFGSSPLSQFLDQTNPLAELTHKRRLTSLGPSGVSRETAGMAVRGIHPS 442 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEE 611 HYGR+CPIETPEG N GL+NSL+VY++ ++ GF+++P+ + +G + E + +LSA +E Sbjct: 443 HYGRICPIETPEGQNAGLVNSLTVYSRVDQNGFIQSPFYLLNNGQIQKEANLTFLSAKDE 502 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + I + + + G D + R E R +D + S Q++SV SLIPFL Sbjct: 503 MSKTIIPGDIHFNSLGFIENDSLPSRKNQEFVRQQRGNIDLIATSPLQMISVATSLIPFL 562 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMG+NMQRQAVPTL A++P VGTG+E + D G + G V YVD+ + Sbjct: 563 EHDDANRALMGSNMQRQAVPTLYAERPRVGTGLESKIVTDIGHIVQTRWSGYVSYVDSQK 622 Query: 732 IVIK--VNEDEMY-----------------------------------PGEAGIDI---- 750 I+I+ V E + PGE + Sbjct: 623 IIIQSFVKHSETFLPTQSIRFLETVSTSKKYSSSLKTDSIEKVFLKSKPGELKTKLEEYE 682 Query: 751 -----YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 Y L Y+ SNQ+T Q P VS G+ VE GD+LADG +++ GELALG N+ VA++ Sbjct: 683 FKTVEYLLENYSGSNQSTFFVQKPIVSEGDWVEAGDILADGSASEKGELALGHNLLVAYI 742 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PW G+NFED+IL+SER+V +D +T++HI++ R+TK G E+IT +P+V + L L Sbjct: 743 PWEGFNFEDAILISERLVTQDLYTSLHIEKYEMEIRETKFGLEKITNKLPDVRKKDLKNL 802 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 D GIV G V GDILVGKVTP + L+P E+LL I G+ V+DSSLRVP G Sbjct: 803 DAQGIVKPGTWVQEGDILVGKVTPIRKKPLSPHERLLYDIVGKINPTVRDSSLRVPRGTQ 862 Query: 926 GTVIDVQVFTRDGVEKDK 943 V+D+Q+ D EK K Sbjct: 863 ARVLDIQIIYSD--EKTK 878 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/303 (47%), Positives = 190/303 (62%), Gaps = 40/303 (13%) Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 K G++ V V++ LA +RRIQ GDKMAGRHGNKG+IS+I PI+DMPY +GTP+ Sbjct: 876 KTKLGEEFVGKVPLKVQILLAQRRRIQVGDKMAGRHGNKGIISRILPIQDMPYLPDGTPL 935 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 DIVLNPLGVPSRMN+GQ+ E L +A + +G+ V E G Sbjct: 936 DIVLNPLGVPSRMNVGQVYECLLSLAGRYLGE--------NYRVVPFDEL------FGPH 981 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 + + + S + + K + P + P G+ +++D Sbjct: 982 ISRSLTYSKLYESSLKN------KQHWLFNP-----------------NCP--GKTKIFD 1016 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 GRTGE F++PVTVG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEME Sbjct: 1017 GRTGECFDQPVTVGEAYVLKLVHLVDDKIHARSTGPYSLVTQQPLRGRSKHGGQRLGEME 1076 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 VWALE +GAAY LQE+LTVKSDDV GR K+ +I+ G + M G PE F VL+KE++SL Sbjct: 1077 VWALEGFGAAYILQELLTVKSDDVKGRHKIMYSILTGKN-MTMGTPECFKVLVKELQSLC 1135 Query: 1335 INI 1337 +++ Sbjct: 1136 LDV 1138 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 25/234 (10%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPV 79 L P L IQ SF KF+E G+ + PI S + ++ + +Y+L P Sbjct: 9 LLTPDFLEIQRVSFVKFLES------GIINEIKRRNPITSSAKEYQIFFYPEAYQLEAPE 62 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 F ++ + G +Y++ L + ++L +IK Q V +G +PL+T G F++N Sbjct: 63 FSPKDALLYGKSYASRLFLPVQLT-------NQVTGEIKFQWVLLGTLPLLTKRGHFILN 115 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G RV+++QL RSPGV++ + + S + ++ A I RG+WL E D ++ R+ Sbjct: 116 GCPRVVINQLIRSPGVYY---QKRLDSQKRDIFYADFICERGAWLRIEMDTSQRIWARMK 172 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 R K+P I+L+++ + + I ++ I L L+P +G+T + Sbjct: 173 RTPKIPVLILLQSMGMSLQTIFSSTSQRTI-------LAKSLLPYEQKGKTKTL 219 >UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax=Ostreococcus tauri RepID=RPOB_OSTTA Length = 1088 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 256/602 (42%), Positives = 355/602 (58%), Gaps = 46/602 (7%) Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 A++ + + P P T N FF+ RY LS VGR + N+ L+ Sbjct: 228 AILLLMSRLFPNRPATVLRGRKFLFNQFFNPRRYSLSDVGRKRVNQKFRMRSKTKHLTLT 287 Query: 422 KDDIIDVMKKLIDIRNGKGE-VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 D + + L+ NG+ E +DDIDHL NRR R GE+ + QFR+GL R+ER + R+S Sbjct: 288 PQDALAALDYLLRCENGETEFLDDIDHLKNRRARLAGELIQTQFRLGLNRLERVIYNRIS 347 Query: 481 -----------LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 LG L++L I + +++ +EFFGS+QLSQFMDQ NPL+EITHKRR Sbjct: 348 DENILRKTPGALGSLNSL-----IRTQVLASVFQEFFGSNQLSQFMDQTNPLAEITHKRR 402 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +S+LGPGGL R+RAG VR +HP++YGR+CPIETPEG N GL+ S++ + Q N+ GFLE+ Sbjct: 403 LSSLGPGGLNRDRAGLIVRGIHPSYYGRICPIETPEGKNAGLVGSIATFTQINKNGFLES 462 Query: 590 PYRKVTDGVVTDE---IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 PY K+ T + LSA E + V+AQ + +L + R+K + + + Sbjct: 463 PYYKLISESNTPDRNGFFLLSAFYEEDTVVAQGDVDLSNFR------IPTRNKSQFTENT 516 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 +++++ + Q +S+ SLIPFLEHDDANRALMG+NMQRQAV LR+++P VGTG+E Sbjct: 517 VQEINFLGLCPIQFMSIATSLIPFLEHDDANRALMGSNMQRQAVSLLRSERPFVGTGLEA 576 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRI-----VIK----------VNEDEMYPGEAGIDIY 751 V D G T VAK+ + YVDA RI VI ED + + Sbjct: 577 HVTRDIGATIVAKQNSYISYVDAQRIDYFTPVIGDTNLIDYQNLTAEDVFASNQFKHNTI 636 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 LT Y RSNQ+TC+N P V VE GD LAD +T GELALG+N+ + +MPW GYN Sbjct: 637 WLTSYQRSNQDTCLNHKPLVEANTWVEAGDCLADNAATAKGELALGRNILIGYMPWEGYN 696 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 FED++LVSER+V +D FT+IHI + + G E T + LDE G+V Sbjct: 697 FEDAVLVSERLVYDDVFTSIHISRYEVSTARLREGQEYFTNQVDRN-----QYLDEFGVV 751 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 IG V GD+LVGK++P+ ++ PE +LLRAIFG A + K +S + +GVSG ++DV Sbjct: 752 KIGTWVEAGDVLVGKISPQPDSDNDPESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDV 811 Query: 932 QV 933 + Sbjct: 812 RC 813 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/291 (48%), Positives = 183/291 (62%), Gaps = 41/291 (14%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V VYL KRR+Q GDK+AGRHGNKG++S I P DMPY ++G +D+VLNPLGVPSRMN+ Sbjct: 833 VYVYLVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPYLQSGKALDMVLNPLGVPSRMNV 892 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQI E LG+AA LKQ +V E GA+V + + Sbjct: 893 GQIFECLLGLAAN--------TLKQNFKVLPFDEM------HGAEVSRGFVYHYLYKSRL 938 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS-GQIRLYDGRTGEQFERPVTVG 1228 + + K L K P S G+ ++DGRTG F++PVTVG Sbjct: 939 L----------------------TQQKWLFK----PNSPGKSIVFDGRTGLNFDQPVTVG 972 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 Y Y+LKL HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR GEMEVWALE +GAAY LQ Sbjct: 973 YPYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFGAAYVLQ 1032 Query: 1289 EMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 E+LT+KSDD+ GR + + +++ G + G+PESF VL+ E+R L +++ + Sbjct: 1033 ELLTIKSDDMIGRNRAFMSMIRGTLLPKSGIPESFKVLVSELRGLCLDMSI 1083 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 36/214 (16%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI--QSYSGNSEL---QYVS------ 72 +P L Q DSF+ F+E G+ PI QS +S+ +++S Sbjct: 10 LPNFLDSQRDSFRYFLET------GIREELDFFSPIVGQSLGSSSKRPTDRFISVSFHSK 63 Query: 73 -YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 + +P + QE + TY + L V + +Y + V ++PLMT Sbjct: 64 DFYFKKPHYTPQEAVQKLGTYKSSLIVPVH--VYSKYLNLNATF-----PVAFCDLPLMT 116 Query: 132 DNGTFVINGTERVIVSQLHRSPGVF----FDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 ++GTF++NG+ RVIV Q+ R PGV+ FD +TH + GSWL FE Sbjct: 117 EHGTFILNGSPRVIVHQIVRCPGVYLKPQFDKQGNRTHL-------VSFLSAYGSWLRFE 169 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 D K +F ID RK+P T+ L+AL ++ + I+ Sbjct: 170 TDKKGVVFAHIDNLRKVPVTVFLQALGFSMDTIV 203 >UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 Tax=cellular organisms RepID=RPOB_ARATH Length = 1072 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 242/586 (41%), Positives = 362/586 (61%), Gaps = 17/586 (2%) Query: 361 SALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 +A++E Y+ G+P E+ + FF + R +L +GR N L + + Sbjct: 221 NAILEFYQQFSCVGGDPIFSESLCKELQKKFFHQ-RCELGRIGRRNINWRLNLNIPQNNI 279 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++Q + L R+E VK Sbjct: 280 FLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGT 339 Query: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 + L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R++S LGPG Sbjct: 340 IGGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GLT A F +RD+HP+HYGR+CPI+T EG N+GLI SLS++A+ ++G LE+P+ ++ + Sbjct: 400 GLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELFE 459 Query: 597 GVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 I +LS ++ Y+IA NS G E V R + E + ++V Sbjct: 460 KSKKARIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQAVPARYRQEFLTIAWEEVHLRS 519 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K +VGTG+ER VA+DSGV Sbjct: 520 IFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGV 579 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 A+A+ G + Y D +IV+ N D + L Y RSN+NTC++Q P V G Sbjct: 580 PAIAEHEGKILYTDTEKIVLSGNGDTLS--------IPLIMYQRSNKNTCMHQKPQVRRG 631 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + +++G +LADG +T GELALG+N+ VA+MPW GYNFED++L+SE +V D +T+ HI+ Sbjct: 632 KCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIR 691 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GE 892 + + T GPE IT +IP++ L LD++GIV +G+ V GDILVGK+TP+ E Sbjct: 692 KYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKE 751 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 + PE++LLRAI G + S K++ L++P G G VIDV+ + G Sbjct: 752 SSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKG 797 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 122/291 (41%), Positives = 178/291 (61%), Gaps = 40/291 (13%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 +I++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G PVD+V NPLGVPSRM Sbjct: 804 EIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRM 863 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 N+GQI E LG+A ++L + +A E + E Sbjct: 864 NVGQIFECSLGLAG--------SLLDRHYRIAPFDE-------------------RYEQE 896 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 +L + + +++ +K+ + + + P G+ R++DGRTG+ FE+PV + Sbjct: 897 ASRKL---------VFSELYEASKQTANPWVFE-PEYP--GKTRIFDGRTGDPFEQPVII 944 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y+LKL H VD +H RS+G Y+LVTQQPL G+++ GGQR GEMEVWALE +G A+ L Sbjct: 945 GKPYILKLIHQVDVIIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHIL 1004 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337 QEMLT KSD + R ++ + G +P ESF +L++E+RSL + + Sbjct: 1005 QEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAQESFRLLVRELRSLALEL 1055 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 101/201 (50%), Gaps = 18/201 (8%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 +P IQ + F +FI+Q GL I+ E Q +Y+L EP+ Sbjct: 12 IPGFNQIQFEGFYRFIDQ------GLIEELAKFPKIEDIDHEIEFQLFVETYQLVEPLIK 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ +TYS+ L V L+ T ++++EQ +++G IPLM GT ++NG Sbjct: 66 ERDAVYESLTYSSELYVSAGLIW-------KTSRNMQEQRIFIGNIPLMNSLGTSIVNGI 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R++++Q+ +SPG+++ S+ +G +Y II G L+ E D K ++ R+ R+ Sbjct: 119 YRIVINQILQSPGIYYQSE---LDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRK 175 Query: 202 RKLPATIILRALNYTTEQILD 222 +K+ ++ A+ +IL+ Sbjct: 176 QKISILVLSSAMGLNLREILE 196 >UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax=Embryophyta RepID=RPOB_ANGEV Length = 1070 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 240/548 (43%), Positives = 352/548 (64%), Gaps = 13/548 (2%) Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 F + +++L GR N+ L + +L D++ + LI + G G +DDID L Sbjct: 250 FFQQKFELGQFGRRNLNKKLNLDVPGNEHLLLPQDLLAAVDYLIGVNYGIGTLDDIDDLK 309 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERL-SLGDLDTLM-PQDMINAKPISAAVKEFFG 507 NRR+RSV ++ Q + L R+E +++ + ++ L+ P+ +I + P++ ++FFG Sbjct: 310 NRRVRSVADLLREQLGLALDRLEILIRQTIHTVARRKRLVTPKGLITSAPLTTIFQDFFG 369 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 S LSQF+DQ NPL+E+THKRR+S+LGPGGLTR A F+VRD++P+HYGR+CPIET EG Sbjct: 370 SHSLSQFLDQTNPLAELTHKRRLSSLGPGGLTRRTASFQVRDINPSHYGRICPIETSEGM 429 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS-NLDEE 626 N GLI SL+++A+ N+ G L +P+ K++ + + I YLS+ E+ Y IA N+ +LD E Sbjct: 430 NAGLIASLAIHAKVNDRGSLLSPFYKISKTLGEEHIVYLSSEEDEYYRIATGNTLSLDRE 489 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 E R + E + Q+ + + Q S+G SLIPFLEH+DANRALMG+NMQ Sbjct: 490 IR-EERATPARYRQEFLTIAWKQIHFRSIFPFQYFSIGTSLIPFLEHNDANRALMGSNMQ 548 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 RQAVP + +K +VGTG+E +A+DSG V+ + G + Y+D I I + E Sbjct: 549 RQAVPLSQPEKCIVGTGLESQIALDSGSVVVSNQDGQIAYLDGETISI------LLQNEK 602 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 +DI ++ Y RSN NTCI+Q P VS GE + +G +LADG +T GELALG+N+ VA+MP Sbjct: 603 TVDIKSII-YERSNNNTCIHQRPVVSQGERLRKGQLLADGTATVGGELALGRNILVAYMP 661 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 W GYNFED++L+SER++ ED +T+ HI+ T GPE+IT +IP++ L LD Sbjct: 662 WEGYNFEDAVLISERLIYEDIYTSFHIERYEINIYTTSQGPEKITKEIPHLDSYVLRHLD 721 Query: 867 ESGIVYIGAEVTGGDILVGKVTPK-GETQL-TPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 +G+V G+ V GD+LVGK+TP+ E L PE KLL+AI G + ++ ++S L+VP G Sbjct: 722 NNGLVVPGSWVETGDVLVGKLTPQEAENSLRVPEGKLLQAISGIQLANTRESCLKVPIGG 781 Query: 925 SGTVIDVQ 932 G VIDV+ Sbjct: 782 RGRVIDVR 789 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/298 (47%), Positives = 194/298 (65%), Gaps = 40/298 (13%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D P + +V VY+ KR+IQ GDK+AGRHGNKG++SKI P +DMPY ++GTPVD++L+ Sbjct: 794 EDTLPNIANMVHVYILQKRKIQVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMILS 853 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMN+GQI E LG+A GD +LK+ + E +R Sbjct: 854 PLGVPSRMNVGQIFECLLGLA----GD----ILKKHYRITPFDERYER------------ 893 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 E RK + + + + ++EA I L + D P G+ RL DGRTG+ Sbjct: 894 --------------EASRK--LVFSELHEASQEAAIPWLFE-PDHP--GKSRLIDGRTGD 934 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 FE+PVT+G YM+KL H VDDK+HARS+G Y+LVTQQPL G+++ GGQR GEMEVWALE Sbjct: 935 IFEQPVTIGKAYMMKLIHQVDDKIHARSSGPYALVTQQPLRGRSRGGGQRVGEMEVWALE 994 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 +G +Y LQEMLT+KSD + R+K+ +IV G +P +PESF +L++E+RSL +N Sbjct: 995 GFGVSYILQEMLTIKSDHIPARSKLLGSIVTGKSIPKPNTVPESFRLLVRELRSLAVN 1052 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 96/200 (48%), Gaps = 18/200 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P IQ + FQ+FI QD L + I+ E + YRL EP Sbjct: 12 LPEFGRIQFEGFQRFIHQD------LVEELTNFPKIEDIDQEVEFRLFGERYRLTEPCIK 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ + TYS+ L V +L + R I+ Q V+ G IPLM GTFVING Sbjct: 66 ERDAVYQSFTYSSDLYVPAQL-MRRRNG------RIQRQTVHFGSIPLMNSQGTFVINGI 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 RV+++Q+ RSPG+++DS+ +G +Y II G E D K ++VR+ + Sbjct: 119 ARVVINQILRSPGIYYDSE---LDHNGNSIYTGTIISDWGGRFKSEIDGKKRIWVRLSKN 175 Query: 202 RKLPATIILRALNYTTEQIL 221 RK+ I+L A+ IL Sbjct: 176 RKVSIIILLLAMGLNMNDIL 195 >UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 Tax=Streptophyta RepID=RPOB_VITVI Length = 1070 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 239/584 (40%), Positives = 362/584 (61%), Gaps = 15/584 (2%) Query: 361 SALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 SA++E Y+ G+P E+ + FF + R +L +GR NR L + + + Sbjct: 221 SAILEFYQQFACVGGDPVFSESLCKELQKKFF-QQRCELGRIGRRNINRRLNLDIPQNNT 279 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++QF + L+R+E V+ Sbjct: 280 FLLPQDILAAADHLIGMKFGMGILDDMNHLKNKRIRSVADLLQDQFGLALIRLENVVRGT 339 Query: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 + L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R+ S LGPG Sbjct: 340 ICGAIRHKLIPTPQNLVTSTPVTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPG 399 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GLT A F +RD+HP+HYGR+CPI+T EG N+GLI SL+++A+ +G LE+P+ ++++ Sbjct: 400 GLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLESPFYEISE 459 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 + YLS + Y++A NS +G E +V R + E + +QV + Sbjct: 460 RSKKVRMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQEFLTIAWEQVHLRSIF 519 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K +VGTG+ER A+DSGV Sbjct: 520 PFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGVPV 579 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +A+ G + Y D +I++ N D + L Y RSN+NTC++Q V G+ Sbjct: 580 IAEHEGKIVYTDTDKIILSGNGDTLS--------IPLVMYQRSNKNTCMHQKAQVRRGKC 631 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 +++G +LADG +T GELALG+N+ VA+MPW GYN ED++L+SER+V D +T+ HI++ Sbjct: 632 IKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYGDIYTSFHIRKY 691 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 894 + T GPE IT IP++ L LD++GIV +G+ V GDILVGK+TP+ E+ Sbjct: 692 EIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGDILVGKLTPQMAKESS 751 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 PE++LLRAI G + S K++ L++P G G VIDV+ + G Sbjct: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKG 795 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 125/289 (43%), Positives = 177/289 (61%), Gaps = 40/289 (13%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 ++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G PVD+V NPLGVPSRMN+ Sbjct: 804 IRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNV 863 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQI E LG+A +L + +A E + E Sbjct: 864 GQIFECSLGLAG--------GLLDRHYRIAPFDE-------------------KYEQEAS 896 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 +L + + +++ +K+ + + + P G+ R++DGRTG+ FE+PV +G Sbjct: 897 RKL---------VFSELYEASKQTANPWVFE-PEYP--GKSRIFDGRTGDPFEQPVIIGK 944 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE Sbjct: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337 MLT KSD + R ++ + G P PESF +L++E+RSL + + Sbjct: 1005 MLTYKSDHIRARQEVLGTTIIGGTIPNPEDAPESFRLLVRELRSLALEL 1053 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 101/201 (50%), Gaps = 18/201 (8%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 +P IQ + F +FI+Q GL I+ E Q +Y+L EP+ Sbjct: 12 IPGFNQIQFEGFCRFIDQ------GLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIK 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ +TYS+ L V L+ T +D++EQ +++G IPLM GT ++NG Sbjct: 66 ERDAVYESLTYSSELYVSAGLIW-------KTSRDMQEQTIFIGNIPLMNSLGTSIVNGL 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D K ++ R+ R+ Sbjct: 119 YRIVINQILQSPGIYYRSE---LDHNGISVYTGTIVSDWGGRLELEIDRKARIWARVSRK 175 Query: 202 RKLPATIILRALNYTTEQILD 222 +K+ ++ A+ +IL+ Sbjct: 176 QKISILVLSSAMGSNLREILE 196 >UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax=Viridiplantae RepID=RPOB_OLTVI Length = 1416 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 264/726 (36%), Positives = 396/726 (54%), Gaps = 88/726 (12%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 VP +++Q +SF +F+E GL PI + + EL + Y+L P + Sbjct: 12 VPDFIAVQRNSFSQFLES------GLIQEISKRNPITNSTKELELCFYPQYYKLSPPELN 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ ++ TYS L + ++L K +K Q V +G +PLMT G F+ING+ Sbjct: 66 AKQSILKNKTYSCRLYIPVKLT-------NKRTKTLKLQWVVLGNLPLMTKRGHFIINGS 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 RVI++Q+ RSPGV+F K +H+ K+ Y A +I YRG+WL E D K +++ R+ + Sbjct: 119 PRVIINQMVRSPGVYF---KEVSHADQKLTYYADLIAYRGAWLRIELDKKADIWARMKKT 175 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 KLP I+L Q L L ++ + K L G +F Sbjct: 176 PKLPMLILL--------QALGLNLPTILKSLNYPKFFENL------GHDGNF-------- 213 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 ++QL+K G+V ++ E +G + ++ L LD Sbjct: 214 ------------MKQLKK--------------GRVSSRSSSQELSGSFNLSEDVSLRLDD 247 Query: 322 LAK-----------LSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 +K L +S K TLF G + ++ + L AL + + Sbjct: 248 SSKNMGAENVQRAPLQKSTKK--ATLF------GDFSRSSVYCKTQEEALWALYALTHPL 299 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 + + T +S F + YDLS +GR++ N+ L E ++ D++ + Sbjct: 300 KNPDEVTANLGKSFLYRKFMNSRVYDLSPLGRLRLNQKLNLSVNENITTITAQDLLFITN 359 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 LI++ G G+VDDID+L NRRIR+ GE+ +NQF +GL+R+E+ ++E+L L Sbjct: 360 TLINLNYGVGKVDDIDNLKNRRIRTAGELVQNQFGIGLLRLEKIIREKLKQQQ-TKLSIG 418 Query: 491 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 +IN KPI+ A++EFFGSS LSQFMDQ NPL+EITHKRR+S+LGPGG+ RE AG +R + Sbjct: 419 SLINTKPINGALREFFGSSPLSQFMDQTNPLAEITHKRRLSSLGPGGVNRETAGMAIRGI 478 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSA 608 HPTHYGR+CPIETPEG N GL+NSL++Y++ N YGF+ETP+ KV G V + + SA Sbjct: 479 HPTHYGRICPIETPEGQNAGLVNSLTIYSRVNPYGFIETPFYKVVKGQVQNSTRPIFFSA 538 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 +E ++A + ++ + + + R E + +R+++DY+ VS Q++S+ SLI Sbjct: 539 YQEEKKLLAPGDIYANKLKYLPKSELPIRKLAEFTRTTREKIDYISVSPLQMISIATSLI 598 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 PFLEHDDANRALMG+NMQRQAVP + A+ P+VGTG+E VA DSG AK+ G V Y Sbjct: 599 PFLEHDDANRALMGSNMQRQAVPLMTAEAPVVGTGLECRVASDSGHVLQAKKSGFVTYSS 658 Query: 729 ASRIVI 734 A +I I Sbjct: 659 AEKITI 664 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/290 (49%), Positives = 183/290 (63%), Gaps = 44/290 (15%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V +Y+A KR+I GDKMAGRHGNKG+IS I P +DMPY +GTP+D+VLNPLGVPSRMN+ Sbjct: 1149 VNLYIAEKRKIHVGDKMAGRHGNKGIISNILPRQDMPYLPDGTPLDMVLNPLGVPSRMNV 1208 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD--LGADVRQKVDLSTFSDE 1167 GQI E LG+A + +G K F R +D G + + S + Sbjct: 1209 GQIYECLLGLAGRYLGQK----------------FKVRPFDEIYGPQTSRSLVYSKLYEA 1252 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 RL R A+P G+ RL+DGRTGE F +PVTV Sbjct: 1253 ---RLRTGQRWLFNPASP----------------------GKTRLFDGRTGECFSQPVTV 1287 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G YMLKL HLVD+K+HARS G YSLVTQQPL G+++ GGQR GEMEVWALE +GAAYTL Sbjct: 1288 GQAYMLKLIHLVDEKIHARSIGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGFGAAYTL 1347 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 QE+LTVKSDD+ GR ++ ++I N + G PESF VL++E++SL +++ Sbjct: 1348 QELLTVKSDDIKGREQVMESI-QKNKTISLGTPESFKVLIRELQSLCLDV 1396 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/225 (45%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 TA +K+ G Y AS + D + Y L K RSNQ+T I P V G Sbjct: 915 TANSKKTGEALYKLASSESATKSMDFSTKTQLKPITYELQKLFRSNQDTSIMHRPVVREG 974 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 E V RGD+LAD +T GEL+LG+N+ +A+MPW GYNFED+IL+SER+V +D +T++HI+ Sbjct: 975 EWVNRGDLLADNSTTVGGELSLGKNLLLAYMPWEGYNFEDAILISERLVSDDAYTSLHIE 1034 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 R+TK G E+IT+ IP+ E LS LD GI G V GDIL+GKV P + Sbjct: 1035 RYEVEIRETKFGLEQITSQIPD--EGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKN 1092 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 L+ EKLL + G+K S +D+SLRVP GVSG VI V++ + + Sbjct: 1093 LSRYEKLLYDVVGKKISTTRDTSLRVPRGVSGRVIHVEILNAENL 1137 >UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742EB4 Length = 487 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 214/445 (48%), Positives = 308/445 (69%), Gaps = 3/445 (0%) Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 D +L E+ + G V +D +DE TGE + A + + ++ K+ + +++ Sbjct: 38 DTELEEILRSRLEGSFVREDVLDEETGEFVAEAEEIIDIPVIQKIIDAKVEKLSIWEVKP 97 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 D I+ L D T + A++E++R +RPG+ T ++A SL + +FF+ RYDL+ V Sbjct: 98 EDR--IIANALVHDSTKNSDEAVIEVFRKLRPGDLVTVDSARSLVKQMFFNPQRYDLADV 155 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 GR K N+ L + +L+K+D++ ++ + ++ +G+G DDID+L NRR+R VGE+ Sbjct: 156 GRYKVNKRLKLDVPADVIVLTKEDVLQTIEYVKNLVSGEGFTDDIDNLSNRRVRGVGELL 215 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 Q + G++++ + V+E++++ D+ TL PQ ++N KP++A + EFFGS QLSQFMDQ+NP Sbjct: 216 SIQIKGGMLKMSKMVREKMTIQDITTLTPQSLLNTKPLNALILEFFGSGQLSQFMDQSNP 275 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 LSE+THKRRISALGPGGL+R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS Y + Sbjct: 276 LSELTHKRRISALGPGGLSRDRAGFEVRDVHNSHYGRICPIETPEGPNIGLIASLSTYGK 335 Query: 581 TNEYGFLETPYRKVTDGVVT-DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 N+YGF+ETP+ K+ DG ++I YL+A EE IAQA++ +D++G+F+ D V CR Sbjct: 336 VNKYGFIETPFVKINDGKADFNDIRYLAADEEEGLFIAQADTPIDKDGNFLTDEVVCRYG 395 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 E + +VD +DVS +Q+VSV A LIPFLEHDDANRALMG+NMQRQAVP L+ + P Sbjct: 396 DEIVHIDKSKVDILDVSPKQLVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPY 455 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVV 724 VGTG+ER VAVDSG +K G V Sbjct: 456 VGTGLERKVAVDSGAVITSKASGTV 480 >UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y994_COPPD Length = 1293 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/584 (44%), Positives = 351/584 (60%), Gaps = 28/584 (4%) Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 SA VE+ + R GE + AE F L F R + VG GI Sbjct: 457 SAFVELEKR-RTGETLSEREAERRFRQLLFDPKRNQIGRVGAYHIEHRY--------GIK 507 Query: 421 SKDDIIDVMKK-----LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR-VERA 474 +D + D M L+ G DDIDHL NRR+R++GE+ F R V+ A Sbjct: 508 VEDSLTDEMLAELGGILLAYCIGSTMPDDIDHLSNRRVRAIGELYYEVFANAFERLVKTA 567 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 E ++ L ++ ++ V F S++ Q ++ NPL+EITHKRR++A+G Sbjct: 568 RDEMINQQKEPELKLHRVLAQNILTQYVWRFVNPSEVHQLLEYTNPLTEITHKRRVTAMG 627 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 GGL+RE A EVRDVH THYGR+CPIETPEG NIGLI SL+ YA+ NE+GFL TPYR+V Sbjct: 628 RGGLSREHASIEVRDVHHTHYGRLCPIETPEGQNIGLILSLATYAKLNEHGFLITPYRRV 687 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 +G VTDEI ++ A+EE I A++ L+ V D V R + + +DQ+ MD Sbjct: 688 VNGEVTDEIVWMDALEEEKEYIVPADTPLNGRKINV-DRVLARHRSQWVAVDKDQITLMD 746 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS Q S+ ASL+PFLE DDA RALMG+NMQRQAVP + A+ P+V TGME+ V Sbjct: 747 VSVTQPFSISASLVPFLESDDAIRALMGSNMQRQAVPLINAESPIVATGMEKHVVESLDY 806 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID-IYNLTKYTRSNQNTCINQMPCVSL 773 A + G V YVD ++ IK E G + Y L + R+NQ+T ++ P V Sbjct: 807 VIKANQDGTVSYVDGKQVKIK--------AEDGYEKTYQLKVFDRTNQDTVVHFRPKVKQ 858 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V++GDVLA+ ++D GELALG+N+ VAFMPW GYN+ED+IL+S+R+V++D FT++HI Sbjct: 859 GQKVKKGDVLAEAITSDNGELALGRNVLVAFMPWEGYNYEDAILISKRLVKDDVFTSVHI 918 Query: 834 QE-LACVSRDTKLGPEEITADIPN-VGEAALSKLD-ESGIVYIGAEVTGGDILVGKVTPK 890 +E + V+ ++ EEIT D+P+ V E LD E+GIV +G EV GDILVGKVTPK Sbjct: 919 REYMVEVAELSRGRSEEITYDLPDSVSEQEKRYLDPETGIVMVGTEVKPGDILVGKVTPK 978 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 E + E KLL AIFGEK VKD+SLRVP G V+D Q+ Sbjct: 979 EEEDKSIETKLLSAIFGEKLDKVKDTSLRVPPAEGGIVVDTQIL 1022 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 148/293 (50%), Positives = 182/293 (62%), Gaps = 54/293 (18%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 G +K VKV++A KR+IQPGDKM+GRHGNKGV+S++ P EDMP+ +G PVDIVLNPLGVP Sbjct: 1028 GKIKAVKVFVAQKRKIQPGDKMSGRHGNKGVVSRVLPEEDMPFLPDGRPVDIVLNPLGVP 1087 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRMNIGQ+LE HL G+ K+ Sbjct: 1088 SRMNIGQLLELHL-----GLAAKV------------------------------------ 1106 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 G + P+F +KELL+ LP +G++ L DGRTGE+F Sbjct: 1107 -------------LGFKVEVPIFSNFGVEGVKELLREAGLPENGKVVLRDGRTGEEFLSD 1153 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 +TVGYMYM+KL H+V+DK HARSTG Y+LVTQQPLGG+A FGGQR GEMEVWALEAYGA+ Sbjct: 1154 ITVGYMYMMKLIHMVEDKWHARSTGDYALVTQQPLGGRAHFGGQRLGEMEVWALEAYGAS 1213 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 Y LQEMLTVKSDDV GR K Y + P +PESF VL E+++LG + Sbjct: 1214 YVLQEMLTVKSDDVEGRKKAYIALTRNQPLEPPQLPESFKVLELELKALGFMV 1266 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 35/227 (15%) Query: 6 TEKKRIRKDFGK--RPQVLDVPY--LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 T +K+I + GK +P + +VPY L + +S+ F+ + GL F + FPI+ Sbjct: 2 TARKKIWEVSGKVSKPTLSEVPYPDFLEAKKNSWNWFVTE------GLRELFNTYFPIED 55 Query: 62 YSGNSELQYVSYRL--------GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 G + + Y G P+ ++ TY+ L VK+R ++ E E Sbjct: 56 AKGRWRIDILDYYFENDVADETGNPINTPEDAIREHATYAKRLIVKVR--VHNSETGE-- 111 Query: 114 VKDIKEQEVYMGE-IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 I E+E +G+ IP MTD+G F++NG+ RV ++QL RSPG++ ++D L Sbjct: 112 ---IVEKEHVLGKRIPWMTDSGDFIVNGSRRVTLNQLVRSPGIYLEADGS--------LR 160 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTE 218 +IP RG+W+D E+D K+ L + +DRR +KL LRAL Y ++ Sbjct: 161 RISLIPQRGTWIDIEYDGKNPLSIVLDRRSKKLNLATYLRALGYMSD 207 >UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carteri RepID=B8R1A0_VOLCA Length = 652 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 251/592 (42%), Positives = 342/592 (57%), Gaps = 100/592 (16%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ Q P V G+ +E GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 118 YNLETYRRSNQDTCLIQKPAVKEGDWIETGDLLADSASSVGGELAIGHNIIVAYMPWEGY 177 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T++HI+ ++ DTKLG E+IT +IP+ E +S LD++GI Sbjct: 178 NYEDAILINERLVYEDLYTSVHIERYEVLTTDTKLGSEQITREIPDTNENEISHLDKNGI 237 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGKVTP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 238 AKIGSWVEEGDILVGKVTPFNIKTLTPQQKLLYKIFNKQLSATKDSSLRAPKGIKANVIN 297 Query: 931 VQVFTRDGVE---KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 V + + +E KDK+ + I K+AK +L + + + V Sbjct: 298 VNILKKQKIELNNKDKKKIVIT----KKAKINLLTQ------------QTISVQNNQNQN 341 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 + R R E+ T A Y + A++RKI GD Sbjct: 342 TNNTNGRRRKREISNT----------YAPSYVHI-------YLAEKRKIQVGD------- 377 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 KMAGRHGNKG+IS+I P +DMP+ +GT VDIVLNPLGVPSRM Sbjct: 378 -----------------KMAGRHGNKGIISRILPRQDMPFLPDGTSVDIVLNPLGVPSRM 420 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 N+GQI E LG+A + +G E K+ F + GAD + LS Sbjct: 421 NVGQIYECLLGLAGRYLG-----------EHYKIPPFDEM---YGADASRSFVLSK---- 462 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 ++D K+ + L D G+IRL+DGR E F++ VTV Sbjct: 463 ------------------LYDARKKTGLNWLF---DPNHPGKIRLFDGRNSECFDQTVTV 501 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y+LKL H+VDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWA+E YGAA+ L Sbjct: 502 GIAYVLKLVHMVDDKLHARSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWAIEGYGAAFVL 561 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 EMLT+KSDD+ GR ++KN+++ N+ + G PESF VL+ E+++L ++I L Sbjct: 562 SEMLTIKSDDMTGRQNLWKNLIE-NNDISLGSPESFKVLVCELQALCLDIGL 612 >UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54649 Length = 440 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/440 (47%), Positives = 286/440 (65%), Gaps = 27/440 (6%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 SQLHRSPGVFFD D+GKTH+SGKVLYNARIIPYRGSWLDFEFD KDNLF RIDR++K+ Sbjct: 1 CCSQLHRSPGVFFDHDEGKTHASGKVLYNARIIPYRGSWLDFEFDHKDNLFFRIDRKKKM 60 Query: 205 PATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDNKLQM 239 +T IL+AL T+E+IL F+E F+ + N + Sbjct: 61 ISTTILQALPSKASEKYLEECHQNKVDPDIYKVSGMTSEEILTYFYETFTFKKQKNGWVV 120 Query: 240 ELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 L + + + F++ + ++ K +++ + +++++ V E + G + Sbjct: 121 NLDLNKFKYKNLPFNLVDPLSKEIVAHKDVKLSLKLLKEIKDKKVSKFFFTEEDLYGFYL 180 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 + D ++ G + A LS + +L++ + + N I +L D N Sbjct: 181 SNDIVNYDNGLVYAEAGTLLSKEFFERLNELSIDQFSVVNANQATGNLGIINSLVADKNN 240 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 R AL +I++++RPGEPPT EA+ LF+N+FFSEDRYDLS VGR+K N L ++ S Sbjct: 241 SREEALFDIFKILRPGEPPTLEASNYLFQNMFFSEDRYDLSEVGRVKLNSYLSLDKTNKS 300 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 ILSK D++ V KKL D++ DDIDHLGNRR+RSVGE+ ENQ+R+GLVR+ERA++E Sbjct: 301 RILSKSDVLAVAKKLFDMKTESAGKDDIDHLGNRRVRSVGELIENQYRIGLVRMERAIRE 360 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 ++ D++++MPQD++N+KPI +KEF G+SQLSQFMDQ NPLSEITHKRRISALGPGG Sbjct: 361 KMGTVDIESIMPQDLVNSKPIQTVLKEFTGTSQLSQFMDQTNPLSEITHKRRISALGPGG 420 Query: 538 LTRERAGFEVRDVHPTHYGR 557 LTRERAGFEVRDVH THYGR Sbjct: 421 LTRERAGFEVRDVHTTHYGR 440 >UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax=Bacteria RepID=RPOB_ROSS1 Length = 1229 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 220/353 (62%), Positives = 259/353 (73%), Gaps = 8/353 (2%) Query: 586 FLETPYRKV-TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 +ETP + + VV+ E+ YLSA EE +VI QAN+ LDE F+E V+ R G+ Sbjct: 602 IVETPLKIIKIRPVVSQEVDYLSADEEDRFVIVQANAPLDEHNRFLEGTVSVRYAGDFDD 661 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 ++VDYMDVS +QVVSV +LIPFLEHDDANRALMG+NMQRQAVP LR D P+VGTGM Sbjct: 662 VPIERVDYMDVSPKQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLRPDAPIVGTGM 721 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E A DSG VAK GVV A IVI ED+ Y L K+ RSNQ+TC Sbjct: 722 EYVAARDSGQVVVAKADGVVLSATADEIVIL--EDD-----GNERSYRLRKFMRSNQDTC 774 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 INQ P VS G+ V +GD++AD STD GELALGQN+ VAFMPW G NFED+ILVSER+V+ Sbjct: 775 INQRPIVSRGQRVRKGDIIADSSSTDNGELALGQNVLVAFMPWEGGNFEDAILVSERLVR 834 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 ED FT+IHI++ +RDTKLGPEEIT DIPNVG+ +L LD+ GI+YIGAEV DILV Sbjct: 835 EDIFTSIHIEKYEVEARDTKLGPEEITRDIPNVGQDSLRNLDDRGIIYIGAEVQPNDILV 894 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GK+TPKGET LT EE+LLRAIFGEKA +VKDSSLRVPNGV G VIDV+VFTRD Sbjct: 895 GKITPKGETDLTAEERLLRAIFGEKAREVKDSSLRVPNGVRGKVIDVKVFTRD 947 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 170/306 (55%), Positives = 204/306 (66%), Gaps = 56/306 (18%) Query: 1036 ITQGDD--LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 T+ DD L GV + V V L KR+I GDKMAGRHGNKGV+S+I PIEDMP+ +GTP Sbjct: 944 FTRDDDVELPVGVNQRVDVLLCQKRKISAGDKMAGRHGNKGVVSRILPIEDMPFLPDGTP 1003 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VDI+LNP+GVPSRMNIGQILETHLG AA +G ++ + +++E+++RA DL Sbjct: 1004 VDIILNPIGVPSRMNIGQILETHLGWAAARLGYRVATPVFDGATETEIKEWLKRA-DLPP 1062 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 D G+I LY Sbjct: 1063 D-----------------------------------------------------GKITLY 1069 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTGE F+RPVTVGY+YM+KL HLV+DK+HARSTG YSLVTQQPLGGKAQFGGQRFGEM Sbjct: 1070 DGRTGEAFDRPVTVGYIYMMKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1129 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEAYGAAYTLQEMLTVKSDDV GR K Y+ IV G E G+PESF VL+KE++SL Sbjct: 1130 EVWALEAYGAAYTLQEMLTVKSDDVVGRVKTYEAIVKGEPIQEAGVPESFKVLIKELQSL 1189 Query: 1334 GINIEL 1339 G+++E+ Sbjct: 1190 GLSVEV 1195 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 153/288 (53%), Positives = 200/288 (69%), Gaps = 26/288 (9%) Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 L+L A L H+ YI TL DP AL+E+Y+ +RPG+PPT Sbjct: 247 LELFAHLETGDHQ--------------YIKATLDKDPARHAKEALLELYKRLRPGDPPTL 292 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLL----REEIEGSG------ILSKDDIIDV 428 + A +L E L F+ RYDLS VGR K N++L R E+ +L DDI + Sbjct: 293 DNARNLIEALLFNPRRYDLSRVGRYKLNKNLWEKDTRPEVRRQAPDVKVRVLLPDDIFKI 352 Query: 429 MKKLIDIRNGKG--EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT 486 ++++I + NG DDIDHLGNRR+R+VGE+ + QFRVGL+R+ER +KER+SL D +T Sbjct: 353 VERMIQLNNGTPGLRADDIDHLGNRRVRTVGELIQQQFRVGLLRMERVIKERMSLQDPET 412 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 P ++N +P+ AA++EFFG +QLSQFMDQ NPL+E+THKRR+SALGPGGL+R+RAGFE Sbjct: 413 ATPNALVNIRPVVAAMREFFGGAQLSQFMDQTNPLAELTHKRRLSALGPGGLSRDRAGFE 472 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 VRDVH +HYGR+CP+ETPEGPNIGLI ++S YA+ NE GFLETPYRKV Sbjct: 473 VRDVHHSHYGRICPVETPEGPNIGLIGTMSTYARVNEMGFLETPYRKV 520 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 139/203 (68%), Gaps = 16/203 (7%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQY 70 R F + +++P L+ QL+SF+ F ++ GL F + PI ++G N EL++ Sbjct: 31 RYSFARISNAIELPKLIETQLNSFEWFRKE------GLRELFEEISPITDFTGKNMELRF 84 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 + Y GEP ++ EC+ RG+TYSAP+RV ++L I + ++KE E+++G+ PLM Sbjct: 85 LDYHFGEPRYNEHECRERGITYSAPIRVNVQLRIL-------STGELKESEIFLGDFPLM 137 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 T+NGTFVING ERV+VSQL RSPGV+F +K T SG+ L++A++IP RG+WL+FE + Sbjct: 138 TENGTFVINGAERVVVSQLIRSPGVYFKEEKDPT--SGRSLHSAKLIPSRGAWLEFETNK 195 Query: 191 KDNLFVRIDRRRKLPATIILRAL 213 +D + V++DR+RK+P TI+LRA+ Sbjct: 196 RDVISVKVDRKRKIPVTILLRAV 218 >UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax=Euglena RepID=RPOB_EUGGR Length = 1082 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 247/754 (32%), Positives = 392/754 (51%), Gaps = 67/754 (8%) Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD---VKLI 285 +F +R+ + +P L E +F N ++ V + R + + +D LI Sbjct: 85 MFLVRNKYILFAKIP--LMTEKGTFIFNGNKRIMVNQIIRSPGVYFEKNRYNDSIFATLI 142 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET-LFTNDLDHG 344 ++ K ID+ G + ++ ++ L+ L G R + L+ ND Sbjct: 143 PTFGSWLTFK------IDQDEGIFVKVDKIKTAIPLINFLKCLGLSRKKFFLYLND---- 192 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA-AESLFENLFFSEDRYDLSAVGRM 403 P ETL+ + E Y++ P E R A + F +YDL VGR Sbjct: 193 PIFIETLQESESYGIRLEFFEFYKIFFPNEVNVRFGNARKFLRSKFMDPRKYDLGEVGRF 252 Query: 404 KFNRSLLREEI-EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 + N + R E + + L +D++ + LI+++ G D+ID L N+ +RS+GE+ ++ Sbjct: 253 RVNTKIYRSEFFQSNRTLQPEDVLGIAHYLIELKKGMIPFDEIDDLKNKLVRSIGELLQS 312 Query: 463 QFRVGLVRVERAVKERLSL----GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 QFR+ L +E ++KE+L T N+ I+ +++FF + LSQ +D Sbjct: 313 QFRIILNELESSLKEKLIFLYKNPSEKTFRLSRFFNSYFITNRIRKFFSVNPLSQLLDDT 372 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 N LSE+THKR++S GP GL +ER +VR+++ + YGRVCPIET EG N GLI SL+ Sbjct: 373 NSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIETSEGKNAGLILSLAKD 432 Query: 579 AQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIA------QANSNLDEEGHFV 630 + ++YGFLE+P+ KV G + I+++S+ +E + +A + SNL ++ Sbjct: 433 VRVDKYGFLESPFYKVLRGKIETNKGIYFISSAQEKYFTVAPFDVFRSSQSNLLDKNKL- 491 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 L RSK S FS++ +D++ +ST Q S+G L+PFLEH+DANR LMG+NMQRQ++ Sbjct: 492 --LGVKRSKIFSYSFSKN-IDFISISTDQFTSLGTGLVPFLEHNDANRVLMGSNMQRQSL 548 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK----------VNEDE 740 L + P + TG E + +S T +AK G V Y +IVI+ N++ Sbjct: 549 ILLEKEVPFIKTGREALINRESDATVLAKSSGKVIYSSLKKIVIQEEEYCANIEFFNKNY 608 Query: 741 MYPGEAGI-----------------DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 + G IY L +SN I ++P V GE V +G ++ Sbjct: 609 SFFNLLGCLNEISQKNFKLIKKVNQKIYFLESPKKSNHGVYIQKIPIVHEGEWVRKGQII 668 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRD 842 ADG ST G + LG+N+ VA++ W GYNFED++++SER+V ED FT+IH+++ + D Sbjct: 669 ADGMSTLRGGICLGKNVLVAYLGWEGYNFEDAVIISERLVFEDIFTSIHMKKFKTFIVND 728 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 K G E I+ IPN + L +GI+ IG+E+ D+L+G++ K + TP+ K+L Sbjct: 729 EKKG-ENISMFIPNASLKTIKNLKNNGIIKIGSEIKAQDVLIGRIKVKLKN--TPKNKML 785 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 A FG K KD SLR P + G V V++ + Sbjct: 786 IAFFGNKVR--KDVSLRSPRSLVGIVTSVEILCK 817 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 127/290 (43%), Positives = 186/290 (64%), Gaps = 39/290 (13%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V +++A KRRIQ GDK+AGRHGNKG+ISKI P DMP+ +GTPVD++LNPLG+PSRMN+ Sbjct: 823 VLIHVAEKRRIQIGDKIAGRHGNKGIISKIVPSIDMPFLPDGTPVDMILNPLGIPSRMNV 882 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+ E+ L +++ LK++ ++ E +Q + + + V +K++ Sbjct: 883 GQVFESLLNLSS--------LFLKERYKIQPFDE-VQTSMNSKSFVYKKLN--------- 924 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 A++ K+ L + P G+ LYDGR F+ PV GY Sbjct: 925 -------------------EARKRTKKDWLFNPNYP--GKAFLYDGRNCRPFDHPVAFGY 963 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 Y+LKL H+V DK+HAR TG YS VTQQPL GK++ GGQRFGEMEVWA+E +GAAY LQE Sbjct: 964 AYILKLIHMVKDKIHARVTGPYSSVTQQPLRGKSKNGGQRFGEMEVWAIEGFGAAYLLQE 1023 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 +LT+KSDDV R++ ++++G + +P +PE+F + + E++SL I+I++ Sbjct: 1024 LLTIKSDDVLNRSEALFSLINGTYFSKPNIPEAFKLFILEMQSLCIDIKI 1073 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 29/209 (13%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQ 86 LL IQ +SF+ F+++ GL R + I Q + + +P + Sbjct: 11 LLDIQRNSFRSFLKK------GLVEELRKIKDIAHEGFRISFQTDNVKYKKPKISAEFAL 64 Query: 87 IRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIV 146 G TYS + + + E + ++ + + +IPLMT+ GTF+ NG +R++V Sbjct: 65 KNGETYSLSVHIPV-------EVTYNNMFLVRNKYILFAKIPLMTEKGTFIFNGNKRIMV 117 Query: 147 SQLHRSPGVFFDSDKGKTHSSGKVLYN----ARIIPYRGSWLDFEFDPKDNLFVRIDR-R 201 +Q+ RSPGV+F+ ++ YN A +IP GSWL F+ D + +FV++D+ + Sbjct: 118 NQIIRSPGVYFEKNR----------YNDSIFATLIPTFGSWLTFKIDQDEGIFVKVDKIK 167 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIF 230 +P L+ L + ++ L+ IF Sbjct: 168 TAIPLINFLKCLGLSRKKFF-LYLNDPIF 195 >UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax=Bigelowiella natans RepID=RPOB_BIGNA Length = 1099 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/624 (34%), Positives = 341/624 (54%), Gaps = 64/624 (10%) Query: 389 FFSEDRYDLSAVGRMKFNRSL--LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 F + YDL GR++ N+ + E I+ S + SKD I+ V L+ I+ E DDID Sbjct: 235 FMNPKYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILAV-HFLLKIKYKIEETDDID 293 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL-DTLMPQDMINAKPISAAVKEF 505 +L N+R++ GE+ ++QF +G++R+++ VK++L G++ + L ++ ++ PI+ + EF Sbjct: 294 NLKNKRVKIAGELIQSQFGIGILRLQKYVKDKL--GNIKNNLHLTNIFSSTPINTTLAEF 351 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 FG + LSQFMD+ NPL+ +THKRR+S+LG GG+ R+ A +R +HPT YGR+CPIETPE Sbjct: 352 FGVNPLSQFMDEVNPLATLTHKRRLSSLGIGGVNRDTATLTIRSIHPTLYGRICPIETPE 411 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNL 623 G N GL+NS +++A+ N G +ETP+ +V +G + E I+YLSA +E I + Sbjct: 412 GKNAGLVNSFALFAEINSEGLIETPFFRVCNGRILYEMGINYLSANQEDKSNIVPFDIKK 471 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 G ++ + R K + S+ +VD++ +S Q++SV SLIPF+EH+DANR LMG+ Sbjct: 472 SRIGFLSKNKIAARIKQQFKEVSKKKVDFISISQLQMLSVATSLIPFMEHNDANRVLMGS 531 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI--------- 734 NMQRQAVP L+ + LVGTG+E + D + G + Y+ +I I Sbjct: 532 NMQRQAVPLLKTECCLVGTGLETKIFFDLQDNVKSPPNGFISYLSLKKITISNIRNEHKS 591 Query: 735 ---------------------------------------KVNEDEMYPGEAGIDIYNLTK 755 K+ Y E I Y + + Sbjct: 592 FNFKSNPLETITCIKSKSRNFNRLKYNLKDLLTNSKESLKITNYMSYVREQKIQYY-IKQ 650 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 Y SNQ TC ++ G+ + + + L G S+ ELALG+N+ V ++ W GYNFED+ Sbjct: 651 YNSSNQGTCSVNRLTLNEGQFIIKKNPLISGLSSCRNELALGKNLFVGYISWKGYNFEDA 710 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 I+++E++V + +T+ H+++ + K E IT DI N+ LD++GI+ IG+ Sbjct: 711 IVLNEQLVINNIYTSTHLEKFETEIKKNKENSEIITRDIKNISFLNKKNLDKNGIIKIGS 770 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 V DILVGK+ P L+P KLL I ++ +++SLRVP G + V Sbjct: 771 RVFSDDILVGKLLPIETRILSPYRKLLYEILQKQNDHYRNTSLRVPKYKRGRITFVDYIK 830 Query: 936 RDG-------VEKDKRALEIEEMQ 952 G + KD + ++I MQ Sbjct: 831 DKGKIKKKTEILKDLKTIKIHLMQ 854 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 132/294 (44%), Positives = 183/294 (62%), Gaps = 42/294 (14%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 LK +K++L R IQ GDK++GRHGNKGVISKI I++MPY +G P+DI+LNPLGVPSR Sbjct: 845 LKTIKIHLMQNRLIQIGDKISGRHGNKGVISKILKIQEMPYLNDGIPLDILLNPLGVPSR 904 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MNIGQ+LE LG++ L+++ +V E G +V + S Sbjct: 905 MNIGQVLECLLGLSC--------FYLQRRFKVIPFDE------SFGFEVSRNFIYSNL-- 948 Query: 1167 EEVMRLAENLRKGMP-IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 N++ G + P + G R++D +G F++P+ Sbjct: 949 -----YFSNIKTGNNWLLHPYYPGKN-------------------RIFDSYSGLPFDQPI 984 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 T+G Y+LKL HLV++K+HARSTGSYSLVTQQPL GK++ GGQR GEMEVWALE YGAAY Sbjct: 985 TIGKAYILKLIHLVEEKVHARSTGSYSLVTQQPLKGKSKKGGQRVGEMEVWALEGYGAAY 1044 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TL E+LTVKSDD+ R K+ +I++ ++ G E+F VL++E++SL +NI+ Sbjct: 1045 TLHEILTVKSDDIKSRQKVLTSILNS-ETIKFGTTETFKVLIRELQSLCLNIQF 1097 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 30/206 (14%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS---YRLGEP 78 L P LL +Q SF F+ +YG++ + + + N + V ++L P Sbjct: 6 LFFPNLLKLQRKSFLTFL------KYGIKKEIKKL----DITKNKKKLLVYPNLFQLNLP 55 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI 138 + EC I TY+ L + +RL+ Y+ E + + + IP+MT+ F+ Sbjct: 56 TYTCNECVITSKTYNCELVIPIRLISYKDEI----------EWITLTNIPIMTNKCNFIT 105 Query: 139 NGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRI 198 NG+ RVI+SQ+ R+PG+++ H + Y A II RG+WL E D K+N+++++ Sbjct: 106 NGSPRVIMSQITRAPGIYY-------HKENENTYYADIIAERGNWLRIEIDKKNNIWMKV 158 Query: 199 DRRRKLPATIILRALNYTTEQILDLF 224 + K+PA + L+AL T ++ L Sbjct: 159 KKVPKVPALMFLQALGVTKSNLIKLL 184 >UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Stigeoclonium helveticum RepID=RPOB1_STIHE Length = 696 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 234/732 (31%), Positives = 382/732 (52%), Gaps = 71/732 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P + +Q SFQ+F+E GL PI + + E+ Y+L P ++ Sbjct: 8 IPDFVELQRRSFQRFLET------GLIEELNKRNPITNSQKDLEILLYPEYYKLAPPRWN 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + + TYS L V +L K I + V +G+IPLM+ G FV+NG Sbjct: 62 SLDAILLSKTYSCRLYVPAQLT-------NRKTKQIMFKWVQLGDIPLMSKRGHFVVNGA 114 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVL---YNARIIPYRGSWLDFEFDPKDNLFVRI 198 RVI++Q+ R PG++F + SS K L Y A I RG+WL D + ++ + Sbjct: 115 ARVIINQIVRGPGLYFSEIQYNVDSSKKTLVRRYAAEFISMRGTWLRLSIDKEKMIWAEL 174 Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFE-IRDNKLQMELVPERLRGETASFDIEA 257 + K+P L + T EK++F+ + K + + L+ + + D+++ Sbjct: 175 KKTPKIPLVWFLLGMGLT---------EKILFQSLTQPKRLLYNYLDYLKIDNLAIDVKS 225 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID-------ESTGELI 310 + ++ +L ++K ++ ++ +V Y + E+ + Sbjct: 226 QNDAFAKRALLRELLLKSKLNSSNIKTLKNSKDFKPLLLVNDIYSEMHSYKEKENRRYPL 285 Query: 311 CAANMELS--LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + N +L+ + + + S K +E +++ I+ T ++ N + A Sbjct: 286 NSQNGDLADEKEKIPYYANSSLKALELIYSK-------ITNTKKITNLNKKFFA------ 332 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 ++ + +F+ F + YDL GR+ N+ L L+ D++ Sbjct: 333 ---------KQGQKWIFKK-FMNPRTYDLGLHGRLSLNKKLSLSLPLSQRTLTMYDVLVA 382 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM 488 + L+ + G DDID+L NRR+R+ ++ + Q +GL+R+E+ ++ + + T+ Sbjct: 383 TEHLLRVEQGLLGTDDIDNLKNRRVRTSSDLIQMQIGIGLLRLEKNIRSKFT-----TIK 437 Query: 489 PQDMIN----AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 IN KP++ A+KEFFG++ LSQFMD NPL+E+THKRR++ LGPGG++R+ A Sbjct: 438 GVPKINYFFSTKPLNGALKEFFGTNPLSQFMDMINPLAEMTHKRRLTTLGPGGVSRDTAT 497 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE-- 602 ++R +HPTHYGR+CP+ETPEG N GL+N+L+ +A+ N G +ETP+ KV G V + Sbjct: 498 MDIRGIHPTHYGRICPVETPEGKNAGLVNALTTFARVNPEGLIETPFYKVYKGQVQKKAG 557 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 YLSA +E +IA + NL + G + L+ R E + R+ VD+M VS Q++S Sbjct: 558 FFYLSAEKEEKAIIAAGDLNLSKTGFLPKGLIPVRKFDEFTKVLRNYVDFMSVSPLQMIS 617 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 V SL+PFLEHDDANRALMGANMQRQAVP +R+++ +VGTG+E +A DSG AK GG Sbjct: 618 VATSLVPFLEHDDANRALMGANMQRQAVPLVRSEQAIVGTGIETRIASDSGHVIRAKAGG 677 Query: 723 VVQYVDASRIVI 734 +V YV +I I Sbjct: 678 LVGYVSGQKIRI 689 >UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=Pseudomonas mendocina RepID=Q5ZH39_PSEME Length = 382 Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 172/228 (75%), Positives = 198/228 (86%) Query: 625 EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 +EG +++LV R E ++ + + V MDVS +QVVSV ASLIPFLEHDDANRALMG+N Sbjct: 155 QEGQLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSN 214 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 MQRQAVPTLRADKPLVGTGMER VA DSGV VA+RGGV+ VDASRIV++VN+DE+ G Sbjct: 215 MQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVNDDEVETG 274 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 EAG+DIYNLTKYTRSNQNTCINQ P VS G+ V RGD++ADGPSTD+GELALGQNMRVAF Sbjct: 275 EAGVDIYNLTKYTRSNQNTCINQRPLVSKGDQVSRGDIMADGPSTDMGELALGQNMRVAF 334 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 MPWNG+NFEDSI +SERVVQEDRFTTIHIQEL CV+RDTKLGPEEI++ Sbjct: 335 MPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEISS 382 >UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment) n=2 Tax=Gammaproteobacteria RepID=A6BAY3_VIBPA Length = 285 Score = 355 bits (910), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 169/225 (75%), Positives = 199/225 (88%) Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 L+VRIDRRRKLPA+IILRAL +TE+ILD+FFEKV FE++D L MELVP+RLRGETASF Sbjct: 1 LYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKDQTLLMELVPDRLRGETASF 60 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 DIE+NGKVYVE+GRR+TARHIRQLEKD V IEVPVEYI GKV +KDYI+E+TGE+I A Sbjct: 61 DIESNGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKDYINEATGEIIVNA 120 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 N E+SL+ LA LSQ+GHK +E LFTNDLDHGP++SETLR+D T DR+SALVEIYRMMRPG Sbjct: 121 NQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRISALVEIYRMMRPG 180 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 EPPT+EAAE+LFE+LFFSE+RYDLS VGRMKFN S+ RE+ + G Sbjct: 181 EPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQG 225 >UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Scenedesmus obliquus RepID=RPOB1_SCEOB Length = 726 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 235/749 (31%), Positives = 376/749 (50%), Gaps = 71/749 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P L+ IQ F +E+ G+ PI + E+ + YRL +P + Sbjct: 8 IPDLVEIQRQGFFYLLEK------GIIEEISKRNPITCFEKQIEIFFYPQYYRLTKPFYS 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 +Q+ +Y + + ++L + K I + + + PLMT+ G F++NG+ Sbjct: 62 IQQAIFYKKSYVSKFYIPVQLT-------DRKTKRIFLKWILLAHFPLMTNRGHFLLNGS 114 Query: 142 ERVIVSQLHRSPGVFFD-------SDKG--KTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 RVI++QL RSPG++F S+K K ++ + Y A II +G+WL E D Sbjct: 115 ARVIINQLVRSPGIYFRENMHEIFSNKWSEKPSTTFRRFY-ADIICLKGTWLRIECDKDF 173 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV----IFEIRDNKLQMELVPERLRG 248 +++ ++ + K+P L + + + IL+ ++ + F K+Q + L+ Sbjct: 174 SMWAKMKKGPKIPLLWFLLGMGLSEKYILNSVYKPMNLLQSFTKEMEKMQKSKSSKELKY 233 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG--------KVVAKD 300 S +A ++ + T R L+K++ E P +I G KVV D Sbjct: 234 PYISSTKQAWEQIQKLFKLKKTLRKFSFLKKNE----EKPKTFIFGQSSTKIEAKVVFSD 289 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + A N + + S ++T F E + + T Sbjct: 290 F---------AAFNNSVKRENTVFASNDDTFLVQTSFETKKKKNTRKKENFQKNKTQKTT 340 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL-LREEIEGSGI 419 ++ + E F N F + YDL GR N+ L L +E + Sbjct: 341 KLSLQNKEKRVASKLEAYELGRKWFANKFMNPRTYDLGKQGRWLINKKLGLTIPLEQT-T 399 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+ D++ L+ I +G E+DDIDHL N+R+R+ GE + F +GL+R+E++++ +L Sbjct: 400 LTALDVLTATDSLMKIEDGFFEIDDIDHLKNKRVRTAGEALQEIFSIGLIRLEKSIRLKL 459 Query: 480 ------------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 S + D+LM + +PI+ A +EFFG+ LSQFMDQ NPL+EITHK Sbjct: 460 NGNGQQSFFQKTSFFNFDSLM-----STRPINGAFREFFGTHPLSQFMDQINPLAEITHK 514 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR+S+LGPGG++R+ A +R +HP+HYGR+CPIETPEG N GL+NS++ Y++ + +G+L Sbjct: 515 RRLSSLGPGGVSRDTATLAIRGIHPSHYGRICPIETPEGKNTGLVNSITTYSKISFHGYL 574 Query: 588 ETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 E+P+ KV G V + YLS ++ ++ A + NL G + + R Sbjct: 575 ESPFYKVYKGQVQRNLGVFYLSPDKDDHFQTATPDLNLTPLGFLPKKPIPVRIGKRFVRM 634 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 ++ M VS Q++SV S IPFLEHDDANRALMG+NMQRQAVP +R ++PL+GTG+E Sbjct: 635 KTHKLALMGVSPLQMISVATSFIPFLEHDDANRALMGSNMQRQAVPLIRPERPLIGTGLE 694 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 V DSG +AK G + Y S+I + Sbjct: 695 ARVVSDSGHAILAKTSGYIVYSSGSKIYL 723 >UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF17_TRIAD Length = 617 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 174/325 (53%), Positives = 236/325 (72%), Gaps = 10/325 (3%) Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 LT+ + TCINQ P V +G+ VE GD+LADG STD+GELALG+N+ VAFMPWNGYNF Sbjct: 293 LTRERAGFEGTCINQRPIVKVGQYVEAGDILADGASTDMGELALGKNILVAFMPWNGYNF 352 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 EDSIL+SER+V++D +T++HI E V+RDT+LGPEEIT DIPNV E L+ LDE+GIV Sbjct: 353 EDSILLSERLVKDDIYTSVHINEYEIVARDTRLGPEEITRDIPNVNEENLTHLDETGIVN 412 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 IGA+V GDILVGKVTPK E+ LTPEEKLLRAIFGEKA+DV++SSLRVP G G ++DV+ Sbjct: 413 IGAQVKPGDILVGKVTPKTESPLTPEEKLLRAIFGEKAADVRNSSLRVPPGEKGVIVDVK 472 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---- 988 +FT+ GV+KD+RA+ IE ++++ KD+ +E +I+E +F++++ +L V+ + Sbjct: 473 IFTKRGVQKDERAISIERNEIEKFSKDMEDEKRIIEDYVFNKVKVILFGKKVKDKSNKSI 532 Query: 989 ------LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 LD L + L L D++ + +++L E YD + EK + K K+ GDDL Sbjct: 533 TIDQNFLDDLDNKQVWSLELDDKKSKEDIQKLEEFYDNYLKKLEKDYKHKVEKLQSGDDL 592 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMA 1067 GVLKI+K+Y+A K +IQPGDKMA Sbjct: 593 PQGVLKIIKIYVANKLKIQPGDKMA 617 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 136/294 (46%), Positives = 207/294 (70%), Gaps = 2/294 (0%) Query: 255 IEANGK-VYVEKGRRITARHIRQLEKDDVKLIEVPVEY-IAGKVVAKDYIDESTGELICA 312 ++AN K + +KG R+T R ++ EK++ + E I K +AKD ++ +TGE++ Sbjct: 8 VDANTKEIIFKKGIRVTPRILKDFEKNNTDRYYITTEDDIKRKFLAKDIVNLTTGEVLYE 67 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 + E++ +++ + I + N++D G +I +T+ +D D AL +IY+++RP Sbjct: 68 STQEVTQEIIDSVKALNINEIVIIDVNNVDSGSFIRDTIVLDKNKDEEQALADIYKVLRP 127 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 GEP T E A+ LFE++FF ++YDLSAVGRMK N+ + + L+KDDII ++K L Sbjct: 128 GEPSTPEVAKQLFESMFFDNEKYDLSAVGRMKINKKHDLDVPHTTTALTKDDIIVIIKHL 187 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM 492 ++++ G G VDDID L NRR+RSVGE+ ENQFR+GLVR+++++ +R+S ++D +MP D+ Sbjct: 188 LNLKCGIGTVDDIDSLANRRVRSVGELVENQFRMGLVRMQKSIVDRMSSVEIDNVMPHDL 247 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 +N+K + + ++EFFG SQLSQFMDQ NPL+EITHKRR+SALGPGGLTRERAGFE Sbjct: 248 VNSKTLMSYLREFFGISQLSQFMDQTNPLAEITHKRRLSALGPGGLTRERAGFE 301 >UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas americana RepID=O21237_RECAM Length = 1478 Score = 322 bits (825), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 286/992 (28%), Positives = 479/992 (48%), Gaps = 98/992 (9%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 +R F +++ +P LL I S+ F+++ L+ +S+ ++ Y GNS + Sbjct: 15 LRLGFSSINEIVPIPNLLKISKSSYNNFLQRFVPYSKRLDVGIQSL--LKKYFGNS---F 69 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 + Y G + EC G+TYS PL V L++ + ++ + T+K + Y+GEIPL+ Sbjct: 70 ICYSFGVSEKNPDECLENGLTYSIPLYVFLKVNM--KDNVKDTIK-----KYYIGEIPLL 122 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGK-THSSGKVLYNARIIPYRGSWLDFEFD 189 TD+G+F+ING E +++QL R GV+ + K +S K+ R + R LD+ +D Sbjct: 123 TDSGSFIINGVENTVINQLVRDSGVYINKSKSPFIKTSLKI----RGLKGRSIQLDYFYD 178 Query: 190 PKDNLFV--RIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERL 246 F+ +ID + + + + + + +++LD F K+ F+ + + Sbjct: 179 N----FIGQKIDTKTLISGKNLNQNITHQEIDKLLDSF--KISFKEIGETFTYSITEYKY 232 Query: 247 --RGETASFDIEANGKV-YVEKGRRITARHI----RQLEKDDVKLIEVPVEYIAGKVVAK 299 G F+ + K +++K + I + + L +D I + + K ++ Sbjct: 233 CNMGWFIDFNWKEISKYRFIKKNKNIISTSLSFDNNLLANNDY--ISILNTVVNNKFISN 290 Query: 300 D------------YIDESTGELICAANMELS--LDLLAKLSQ--SGHKRIETLFT--NDL 341 D Y D + +I N + S L+LL K+ S K + LF N Sbjct: 291 DKFLNHDLFLLDIYKDNKSIFIIENTNDDFSYPLELLNKVGSHLSSFKNSDFLFLIENKN 350 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE-----DRYD 396 + YI L+ P + R S V I + + ++ + +N FF E + Sbjct: 351 INYQYIFINLKEQPDSIRNSLQVVIES--KKKKLLMFFNSKHVLKNDFFLEKDVLFHNFK 408 Query: 397 LSAVGRMKFNRSL-LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH--LGNRRI 453 L +GR+K N L E+ E L+ D +++ LI I G E D + L NRR Sbjct: 409 LGPIGRLKINLKFGLNEKKEE---LTSIDFTRILRYLIQIDKGFIENDIYEEQSLLNRRF 465 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDL--DTLMPQDMINAKPISAAVKEFFGSSQL 511 ++GE + L+ E + K +S D + ++ + + N + + + S L Sbjct: 466 NNIGEHLYSCLSDYLISKEDS-KYSVSKEDYIKNQMLFKKINNCRNAFYFLIRYLNKSSL 524 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 Q+ +Q N LS + H R++S +GPGGL + E+RDVH + YG++CPIETPEG ++G+ Sbjct: 525 CQYTEQANALSYLGHTRKVSIMGPGGLKNDNISLEMRDVHISTYGKICPIETPEGKSVGV 584 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE 631 +N+LS+Y +TN LETPY V + VT+ IHYL+ EE Y IA A L ++G F+ Sbjct: 585 VNNLSLYTRTNTLFQLETPYIFVKENFVTNIIHYLTPQEEKYYKIAHATEVLKKDGSFLN 644 Query: 632 DL-VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + CR VDY+++S+ Q+ S+ AS+IPFLEH+D NRALMG+NMQ+QAV Sbjct: 645 TKEIYCRYLHSLITVDSKNVDYIEMSSGQITSLSASMIPFLEHNDGNRALMGSNMQKQAV 704 Query: 691 PTLRADKPLVGTGMERA-----VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 P L +K L+GTG+E + + V + +I+ K N++ ++ Sbjct: 705 PLLNLEKSLIGTGIEGIIGRDFFNISKNLLLEKMTNENVFGISILKILKKENKNIIFSQF 764 Query: 746 AGIDI-----YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 + I Y+ K+ SNQ T I+ + ++ G S EL+LG N+ Sbjct: 765 VDLFIKNHFLYSTIKHKNSNQKTDIDFKYVNKKNINIFENNIDNIGYSIKNNELSLGNNV 824 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 V F NG+ FEDSI++SER+V+++ F +IH++ V + ++ ++ I N Sbjct: 825 LVGFTSMNGHTFEDSIVISERIVRDNYFQSIHLE----VYKTMEMYEKDSQEIIRNFLST 880 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 LD G++++G V DIL+GK K + L+ + KL+ V D S+R Sbjct: 881 DF--LDVDGVIHLGTNVCTNDILIGK--EKRQLLLSEKNKLI----------VYDKSIRY 926 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 N G VI + F V+ +K + +Q Sbjct: 927 KNKKKGVVIQIAKFFDSLVDLNKHYITTSNLQ 958 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 138/293 (47%), Positives = 199/293 (67%), Gaps = 4/293 (1%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L++VKV +A K IQ GDK+ GR+GNKGVIS+I +EDMPY +GTP+DIVL+PLGV SR Sbjct: 1183 LRMVKVVVACKHNIQVGDKLTGRYGNKGVISRILSLEDMPYLRDGTPLDIVLSPLGVSSR 1242 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MNIGQ+LE HLG+A + K+ +++ V K R+++ Y + ++ + L++ +D Sbjct: 1243 MNIGQLLECHLGLAGVELSKKLQQIIQTYDIVGKSRKYLSMLY---RNKKELLLLNSLND 1299 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 +++ L +N+ G+PI+TP+F+ A +I LL++ L ++ + DG TG + VT Sbjct: 1300 SQIICLFKNISHGIPISTPIFNSANNFDIDNLLRISGLNIQSKVTIIDGITGVVLDNKVT 1359 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VGYMYM+KLNHL+D K+H RSTG Y+++TQQ GK++ GGQR GEMEVWAL+AYGAAYT Sbjct: 1360 VGYMYMMKLNHLIDHKIHGRSTGPYNIITQQASKGKSRNGGQRLGEMEVWALQAYGAAYT 1419 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 LQEMLT KSD R+ +N + G +P +F +L E+R LG+ + Sbjct: 1420 LQEMLTFKSDSTISRSSFLQNFIRGKTS-RIDIPRTFKLLRDELRVLGMELNF 1471 >UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-terminal section n=3 Tax=Eukaryota RepID=RPOB1_CHLRE Length = 822 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 156/378 (41%), Positives = 229/378 (60%), Gaps = 30/378 (7%) Query: 387 NLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 N F + YDL VGR+ FNR L + L+ D++ LI + G E+DDID Sbjct: 441 NKFMNPRTYDLGKVGRVNFNRKLKLSISQDITTLTPQDLLAATNNLILVSKGLRELDDID 500 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ---------------- 490 HL NRR+R+ GE+ + Q VGLVR+E+ ++E+++ + +P Sbjct: 501 HLKNRRVRTSGELIQIQIGVGLVRLEKTIREKMTYASGLSSLPSQKFAFRSSKQRNQSPV 560 Query: 491 ------------DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 ++IN KP + A++EFFG+S LSQFMDQ NPL+E+THKRR+S++GPGG+ Sbjct: 561 GDAENATQLTIGNLINTKPFNGALREFFGTSPLSQFMDQINPLAELTHKRRLSSMGPGGV 620 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 TR+ A +R +HP+HYGR+CP+ETPEG N GL+NSL+ YA+ N G++ETP+ +V G Sbjct: 621 TRDSATLAIRGIHPSHYGRICPVETPEGKNTGLVNSLTAYARVNAAGYIETPFYRVYKGQ 680 Query: 599 VTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 V + +++ SA +E + + E G + + R + + SR+++ Y+ V+ Sbjct: 681 VQKKTGLYFFSAKQEEKIKLGAPDLYTSEIGFLPKASIPVRIVEDFTKISRNEIQYVGVA 740 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 Q++S+ SLIPF EHDDANRALMG+NMQRQAVP L+ +P+VGTG+E DSG Sbjct: 741 PIQMISIATSLIPFFEHDDANRALMGSNMQRQAVPILKPQRPIVGTGLEARAVSDSGHVI 800 Query: 717 VAKRGGVVQYVDASRIVI 734 AK G+V Y + I+I Sbjct: 801 TAKSSGIVMYTSSKEIII 818 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 27/210 (12%) Query: 26 YLLS----IQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPV 79 YL+S IQ +SF +E+ G+ F PI + E+ + Y+L P Sbjct: 122 YLISDFVEIQRNSFFTLLEK------GIIEEFSKRNPITNSKKTMEIFFYPDYYQLTPPE 175 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 + + I+ +Y++ L + ++L + + IK + VY+G+IPLMT G F++N Sbjct: 176 YSPSQAIIKSKSYTSKLYIPVQLT-------DKSKNIIKLKWVYIGDIPLMTKRGHFILN 228 Query: 140 GTERVIVSQLHRSPGVF--------FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 G RVIV+Q+ RSPG++ F + + + Y A +I RG+WL E D Sbjct: 229 GCARVIVNQMVRSPGIYYQKKIYENFSNKWSEKPENTFTRYFADLICNRGTWLRIEMDKY 288 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQIL 221 + ++ ++ R K+P L A+ T + +L Sbjct: 289 NKIWAQMKRVPKIPIMWFLIAVGLTDKIVL 318 >UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z1_OEDCA Length = 672 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 156/360 (43%), Positives = 230/360 (63%), Gaps = 8/360 (2%) Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 + + LF+ F + YD+ +GR+ N+ +L+ D++ L+ + G Sbjct: 313 QTRKWLFQR-FMNPRSYDIGTIGRLALNKKFNLSISTKKHVLTPYDLLFATDYLMKVEKG 371 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP--QDMINAK 496 +DDIDHL NR++R+ E+ + Q +GL+R+E+ +K+RL + + P + +I K Sbjct: 372 LKNLDDIDHLQNRKLRTASEIIQIQIGIGLIRLEKYIKDRL---NQIKVFPKIESLITTK 428 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 +++A+ EFFG+S LSQFMDQ NPL+EITHKRR+++LGPGG+T++ A +R +HPTHYG Sbjct: 429 SLNSALTEFFGTSPLSQFMDQINPLAEITHKRRLTSLGPGGITKDNATMIIRGIHPTHYG 488 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNY 614 R+CP+ETPEG N GL+NS++ YA+ N G +ETP+ KV G V I +LSA +E Sbjct: 489 RICPVETPEGKNAGLVNSITTYAKINSSGLIETPFYKVYKGQVMKNLGIFFLSADDEEQI 548 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 A+ NL G ++ + R K FSR+QV YM +S Q++S+ SL+PF EHD Sbjct: 549 NTVAADINLSAFGFLPKNYIPGRKKDNFIRFSRNQVHYMSISPIQMISIATSLVPFFEHD 608 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DANRALMGANMQRQAVP +R +P+VGTG+E DSG ++ GG+V YV A +I++ Sbjct: 609 DANRALMGANMQRQAVPLIRPKRPIVGTGVEIRSVADSGHIIESRTGGIVSYVSAKKIIV 668 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 127/270 (47%), Gaps = 35/270 (12%) Query: 30 IQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFDVQECQI 87 +Q +SF F++ GL + PI+++ N E + Y+L P ++V+E + Sbjct: 24 LQRNSFLNFLKN------GLIEELSNRNPIRNHKNNIEFIFYPEYYKLKRPKWNVRESIL 77 Query: 88 RGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVS 147 G +Y A L V +L+ + K I+ + V +G +PLMT G F+ING RVI++ Sbjct: 78 LGKSYVAELYVPAQLM-------DKNNKKIQLKWVLIGNLPLMTKRGYFIINGAARVIMN 130 Query: 148 QLHRSPGVF-------FDSDKGKTHSSGKVL--YNARIIPYRGSWLDFEFDPKDNLFVRI 198 Q+ R PG++ +DS + K + Y A + RG WL D + + Sbjct: 131 QIIRGPGIYYSEAIHQYDSFEKKNILMNQSFSRYYADFVSLRGYWLRLSVDKDQFFWAEM 190 Query: 199 DRRRKLPATIILRALNYTTEQILDLFF---EKVIFEIRD---NKLQMELVPERLRGETAS 252 + K+P L A+ E++L + ++++ + + +K Q+ L+ + + + Sbjct: 191 KKTPKIPLLWFLLAIG-LNERLLFRYISNPKRLLHNLHNSLKSKTQLALIKKLQKLQHIQ 249 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDV 282 ++ N +EK ++ I +++K+D Sbjct: 250 LNVSNN----IEKKQKNKTHTIERVQKNDT 275 >UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Tax=cellular organisms RepID=RPOB_PSEAK Length = 2178 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 152/345 (44%), Positives = 223/345 (64%), Gaps = 7/345 (2%) Query: 395 YDLSAVGRMKFNRSL-LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 YDLS +GR K N+ L + +E + IL+ D++ L+D+ G DDID L NR+I Sbjct: 368 YDLSILGREKINKKLGISIPLEKT-ILTSQDVLFACLFLMDLLQGLVISDDIDDLKNRKI 426 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 + GE+ + Q GL+R+E+ ++E+L D+ ++ + KP++ A ++FFG++ LSQ Sbjct: 427 KPSGELIQTQLSTGLIRLEKIIREKLKQPKQDSDSFSNLFSVKPLNQAFRDFFGTNPLSQ 486 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 MDQ N LSEITHKRR+S+LGPGG+ RE AG +R +HPTHYGR+CPIETPEG N GL+N Sbjct: 487 LMDQTNALSEITHKRRLSSLGPGGINRETAGMAIRGIHPTHYGRICPIETPEGQNAGLVN 546 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVE 631 S ++++ N F+ETP+ K+ G + + S+ +E N V+A + HF+ Sbjct: 547 SFTIFSHLNTKSFIETPFYKMYKGFILKNKNPFLFSSDQERNLVLAPGDIQ-TSLFHFLP 605 Query: 632 DLVTCRSK--GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 V S+ E SR++++++ VS Q++S+ SLIPFLEH+D NRALMG+NMQRQA Sbjct: 606 PGVPIPSRQFKEFKRVSRNEINFIAVSPIQMISIATSLIPFLEHNDGNRALMGSNMQRQA 665 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 VPT+R KP+VGTG+E V D G ++ G V YVD ++I+I Sbjct: 666 VPTVRPSKPIVGTGLESRVISDVGHGLQVQKSGFVSYVDGNKIII 710 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 144/293 (49%), Positives = 190/293 (64%), Gaps = 46/293 (15%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V +YLA KR++Q GDK+AGRHGNKG+IS I P +DMPY +GTP+DIVLNPLGVPSRMN+ Sbjct: 1911 VHIYLAEKRKLQIGDKIAGRHGNKGIISNILPRQDMPYLSDGTPLDIVLNPLGVPSRMNV 1970 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQILE LGMA G ++Q + F + Sbjct: 1971 GQILECLLGMA-------------------------------GYYLKQNFKIQPFDEIYG 1999 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIK---ELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + +L V+ EA IK + L + P G+ RL+DGRTG+ F++PVT Sbjct: 2000 CEASRSL---------VYSKLYEARIKTGQDWLFNANHP--GKTRLFDGRTGDCFKQPVT 2048 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE +GAAY Sbjct: 2049 VGVAYILKLIHLVDDKIHARSTGPYSLVTQQPLRGRSKQGGQRVGEMEVWALEGFGAAYI 2108 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 LQE+LT+KSDD+ GR ++ +I++ N + G+PESF VL++E++SL ++I + Sbjct: 2109 LQEILTIKSDDLKGRNQVMNSILN-NKPVNFGLPESFKVLVRELQSLCLDIAI 2160 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 127/206 (61%), Gaps = 1/206 (0%) Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 D R V +N ++ Y L Y RSNQ+T + P V G+ VE+GD+LAD Sbjct: 1492 DKKRRVEIINSSSLFYNNLIPQNYILNNYHRSNQDTYMIHRPLVQEGQWVEKGDILADSS 1551 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + GEL++GQN+ V ++PW GYNFED++L+SER++ +D +T++HI+ RDT+ G Sbjct: 1552 VSVQGELSIGQNILVGYIPWEGYNFEDAVLISERLIFDDLYTSLHIERYEVEIRDTQFGL 1611 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 E+IT IPN + +D +GI IG V GDILVGK+ P G+ +LT E LL I Sbjct: 1612 EQITNQIPN-EKGEYDYIDSNGIAKIGTWVKEGDILVGKIAPIGQKKLTAYENLLYDILN 1670 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQV 933 ++ +D+SLRVP GV+G VI V++ Sbjct: 1671 KEIPKTRDTSLRVPRGVTGRVIHVEI 1696 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 20/198 (10%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPV 79 +P L+IQ SF++F++ GL F++ I + + E+ + + Y+L P Sbjct: 63 FKIPDFLNIQRSSFRQFLKS------GLITEFKNCKSITNSNQTFEVFFYAEHYKLNRPK 116 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 + ++ ++ +YS+ L + ++L Y+ E ++ Q V + +PLMT NG F++N Sbjct: 117 WTPKQAILKKKSYSSQLYLPIQLSNYQTE-------EVHLQWVLLANLPLMTKNGHFILN 169 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD-NLFVRI 198 G RV+++Q+ RSPGV+F K + K +Y+A I RGSWL E D K +++ ++ Sbjct: 170 GCPRVLMNQIVRSPGVYFR----KVVKNQKTVYSADFIAQRGSWLRLEVDTKKGDIWAKL 225 Query: 199 DRRRKLPATIILRALNYT 216 + K+P LRAL T Sbjct: 226 KKTPKIPIFTFLRALGLT 243 >UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=Pseudomonas aeruginosa RepID=Q5ZH00_PSEAE Length = 364 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 130/175 (74%), Positives = 154/175 (88%) Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 LMPQD+INAKP++AA+KEFFGSSQLSQFMDQNNPLSEITHKRR+SALGPGGLTRERAGFE Sbjct: 3 LMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFE 62 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 VRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V D +VTDEI +L Sbjct: 63 VRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIVFL 122 Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 SAIEE ++VIAQA++ L+E+G V++LV R E ++ + + V MDVS +QVV Sbjct: 123 SAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVV 177 >UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F81 Length = 309 Score = 275 bits (703), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 140/308 (45%), Positives = 206/308 (66%), Gaps = 11/308 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ---YGLEAAFRSVF 57 M S+TEKK IRK FGK + L +P L+ +Q +S+++ E + E G + F+S+F Sbjct: 1 MQLSFTEKKNIRKSFGKLKESLSIPNLIEVQKNSYKELTEFNTEVTELTKGFDRVFKSIF 60 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 PI+ + + L+YVSYRL +P FDV+EC RG+TYS+ L+ LRLV+YE + E KDI Sbjct: 61 PIEDLNDKATLEYVSYRLEKPKFDVEECIARGLTYSSALKCTLRLVVYEIDQ-ENNTKDI 119 Query: 118 ---KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 KEQEVYMGE+P+MT++GTF+ NG +RV+V+Q+HRSPGVFFD DKGKTH+SGK+L+N Sbjct: 120 LSAKEQEVYMGEVPMMTNSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKTHASGKLLFNC 179 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF--EKVIFEI 232 R+IP RGSWLDFE+D KD L+ +IDR++K+ ++ +L AL YT +I+D F+ E+ F+ Sbjct: 180 RVIPNRGSWLDFEYDVKDFLYFKIDRKKKIFSSTLLLALGYTKSEIVDEFYESEQYNFDP 239 Query: 233 RDNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 + K + + PE + + S ++ G+V ++ G +I ++L D +K I V E Sbjct: 240 KTEKWKTKFNPENYKAKNFSEEVIDAKTGEVVIKLGDKINFLSAKKLANDGLKDILVSRE 299 Query: 291 YIAGKVVA 298 + GK Sbjct: 300 SLFGKFCT 307 >UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEV5_CHLKE Length = 1312 Score = 272 bits (695), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 150/300 (50%), Positives = 194/300 (64%), Gaps = 43/300 (14%) Query: 1042 LAP--GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 LAP +L+ V++ L KR IQ GDKMAGRHGNKG+ISKI P +DMPY +G P+DIVLN Sbjct: 1033 LAPKNAILR-VRIALLQKRNIQVGDKMAGRHGNKGIISKILPCQDMPYLPDGNPIDIVLN 1091 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMN+GQILE+ LG A K + E K+ F ++ GA+ + + Sbjct: 1092 PLGVPSRMNVGQILESLLGFAGKYL-----------HESYKIELFDEK---FGAEASRSL 1137 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 S + + A P L + G+I+L+DGRTGE Sbjct: 1138 VYSKLYEA-----------SLKTANPW--------------LFEPQHPGKIKLFDGRTGE 1172 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 F++PVTVGY YMLKL HLVDDK+HAR+TG YS VTQQP+ G+A+ GGQR GEMEVWAL+ Sbjct: 1173 SFDQPVTVGYAYMLKLIHLVDDKIHARATGPYSAVTQQPVRGRARNGGQRLGEMEVWALQ 1232 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AYGAAYTLQE+LT+KSDD++GR + I N ++ G PESF VLL+E++SL N+++ Sbjct: 1233 AYGAAYTLQELLTIKSDDIDGRKEAVFRIYT-NRSLKFGQPESFKVLLRELQSLCFNLQI 1291 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 201/369 (54%), Gaps = 15/369 (4%) Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 + A E +N++ ++R ++ +GR +F L L+ DDI K + + Sbjct: 283 QTAQEFFLKNVWNYKNR-NIGYLGRKQFREKLGSTLSITETWLTADDISLATKASLKLLC 341 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL-----------GDLDT 486 + DDID+L N+R+R GE ++ GL E + + S + T Sbjct: 342 NEQVADDIDNLDNKRVRGCGEFLYDELNSGLQEFEHVLNRKFSNISISSKNSIFGNECAT 401 Query: 487 LMPQD-MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + + +K IS + K FF LSQFMD+ NPL+E THKRR++ LGPGG++ ++ Sbjct: 402 FWRFNRSLLSKYISKSWKNFFTGGTLSQFMDETNPLAETTHKRRLTVLGPGGVSGKQTTI 461 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI-- 603 ++R +HPT+YGR+CPIETPEG N GL+NS +VY Q N G LETP+ +V G + E+ Sbjct: 462 QIRGIHPTYYGRLCPIETPEGQNAGLVNSFTVYTQRNSQGILETPFFEVYKGQIQKELKA 521 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 HYLS E V+A A+ L + + R + +Q+ + Q++SV Sbjct: 522 HYLSPQTESYLVLAPADICLSPWNQLPKTDLPVRKNWKFEYTIWNQISKQSIGLLQMISV 581 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 SLIPFLEHDDANRALMG+NMQRQAVP LR + LV TG+E V D + + G Sbjct: 582 ATSLIPFLEHDDANRALMGSNMQRQAVPLLRPENALVSTGLETRVISDVNHGIRSSKTGY 641 Query: 724 VQYVDASRI 732 + V +++I Sbjct: 642 ITAVSSTKI 650 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 125/192 (65%), Gaps = 9/192 (4%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L Y R+NQ+TCI Q P + G+ V+ D++ADG ++ G+LALG+N+ +A++PW GY Sbjct: 831 YSLDNYQRTNQSTCITQRPNLKEGDWVQITDIIADGSASAGGKLALGKNVLIAYVPWEGY 890 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA------LSK 864 NFED+IL+S++++++D FT++HI ++T+ G E IT +P +A+ L + Sbjct: 891 NFEDAILISDKLLEKDVFTSLHIDYYEVEVKNTQYGLETITNKVPLEIDASSKDILQLQR 950 Query: 865 LDESGIVYIGAEVTGGDILVGKV---TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L+ +G++ IG+ V GD LVGK+ +PKG + EKL I+ K++SLRVP Sbjct: 951 LNSNGLIEIGSWVEEGDYLVGKISPLSPKGPSIYKQYEKLYNVIWQRDNPTFKNTSLRVP 1010 Query: 922 NGVSGTVIDVQV 933 GV G V+DVQ+ Sbjct: 1011 KGVEGFVLDVQI 1022 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 29/205 (14%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY---SGNSELQYVSY----RLG 76 +P L+ IQ +SFQ F+ Q GL FRS+ +S+ +L+ V + + Sbjct: 32 IPDLIDIQRNSFQNFL------QCGL---FRSLKKKKSFIFRKSIHKLEIVLFPEWIQFK 82 Query: 77 EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTF 136 +P D ++ G TY + + + + LV + G K+ K + + +G +PL+T G F Sbjct: 83 KPELDSKKALHFGKTYGSYIYIPV-LVKFS-----GWKKN-KLEWILLGFLPLLTKQGHF 135 Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 +ING RV++ Q+ R+PG++ S KT + RI+P +GSW++ D K +++ Sbjct: 136 IINGIPRVVLHQMIRNPGIYILSKDSKTRVA-----TIRIVPEQGSWINITIDKKYRIWI 190 Query: 197 RID-RRRKLPATIILRALNYTTEQI 220 R+K+ I L+AL ++ +I Sbjct: 191 TTRFLRKKISVLIFLQALGFSLSEI 215 >UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunaliella salina RepID=D0FY17_DUNSA Length = 916 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/255 (49%), Positives = 175/255 (68%), Gaps = 2/255 (0%) Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 L L +IN K ++A++EFFG+S LSQFMDQ NPL+E+THKRR+S++GPGG+TR+ A Sbjct: 662 LKGLTSSSIINNKAFNSAIREFFGTSPLSQFMDQINPLAELTHKRRLSSMGPGGVTRDTA 721 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE- 602 +R +HPTHYGR+CPIETPEG N GL+NS++ YA+ N G LE+P+ KV G V Sbjct: 722 TLAIRGIHPTHYGRICPIETPEGKNTGLVNSMTTYARVNSSGILESPFYKVYKGQVQKNT 781 Query: 603 -IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 ++YL+A +E +A A+ + G + ++ R + SR V Y+ VS Q++ Sbjct: 782 GMYYLNAEQEEKIKLAAADLYVSPIGFLPKAMIPARIAETFTKISRSSVQYIGVSPLQMI 841 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 S+ ASLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E DSG ++ Sbjct: 842 SIAASLIPFLEHDDANRALMGSNMQRQAVPLIRHERPIVGTGLEGRAVSDSGHVIQSRYS 901 Query: 722 GVVQYVDASRIVIKV 736 G+V YV A +I++ + Sbjct: 902 GLVTYVSAKKIIVSI 916 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 44/239 (18%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI----QSYSGNSELQYVSYRLGEPVFDV 82 +++Q SF + +E+ GL F PI + YS +Y Y L P + Sbjct: 11 FVTVQRQSFFELLEK------GLIEEFAKRNPITNGRKDYSFFFYPEY--YILTRPEYKP 62 Query: 83 QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 E ++ +Y++ L V +++ + K I + VY+G IPLMT G F++NG Sbjct: 63 HEAILKNKSYTSKLFVPVQITNKKH-------KQIVLKWVYIGNIPLMTKRGHFILNGAA 115 Query: 143 RVIVSQLHRSPGVF--------FDSDKGKTHSS-------GKVL--------YNARIIPY 179 RVIV+Q+ RSPG++ ++ +KG ++ G L + +I Sbjct: 116 RVIVNQILRSPGIYYQQKIYENYEDNKGSKSNAQDDETGEGSSLQPVNTYKRFYCDLICM 175 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF--EKVIFEIRDNK 236 RGSWL E D + N++ ++ + K+P L A+ + + IL +KV+ + NK Sbjct: 176 RGSWLRIEMDKEKNIWAQMKKGPKIPIYWFLLAMGLSEKVILKSIMDPQKVLGNLERNK 234 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 50/98 (51%) Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 E N F + YDL GR+ FN+ L L+ D++ LI + G Sbjct: 462 ELGRQWLYNRFMNPRSYDLGKQGRIAFNKKLGLTIASHQLTLTGLDVLYATDYLIKVEKG 521 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 DDIDHL NRR+R+ GE+ + Q VGLVR+E+ ++ Sbjct: 522 IFNTDDIDHLKNRRVRTSGELIQIQIGVGLVRLEKFIR 559 >UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY16_DUNSA Length = 924 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 139/294 (47%), Positives = 188/294 (63%), Gaps = 42/294 (14%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 ++ + +YLA KR+IQ GDKM+GRHGNKG++S+I P++DMP+ +GTP+D+VLNPLGVPSR Sbjct: 626 IETIHIYLAEKRKIQVGDKMSGRHGNKGIVSQILPMQDMPFLPDGTPIDMVLNPLGVPSR 685 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQI E LG+A K +G+ +++ E G + + Sbjct: 686 MNVGQIYECLLGLAGKYLGE--------HYKISSFDEI------YGPEASRSF------- 724 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK-LGDLPTSGQIRLYDGRTGEQFERPV 1225 VF EA K K L + G+IRLYDGRTG+ + +PV Sbjct: 725 -------------------VFSKLYEARCKTGFKWLFNPQYPGKIRLYDGRTGDCYHQPV 765 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 TVG YML+L H+VDDK+H RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+ Sbjct: 766 TVGQSYMLRLVHMVDDKIHMRSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWALEGYGAAF 825 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TL EMLTVKSDD+ GR ++ N++ N + G PE+F VL+ E+++L ++I L Sbjct: 826 TLLEMLTVKSDDLTGRMTLWSNLI-LNKDLTIGTPEAFKVLICELQALCLDIGL 878 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 65/253 (25%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L + RSNQ+TC+ P V G+ V+ GD L D ++ GEL+LGQN+ +A+MPW GY Sbjct: 95 YKLETFHRSNQDTCLTHKPAVFEGDWVQSGDFLTDCANSVGGELSLGQNIFIAYMPWEGY 154 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELAC-------VSRDTKLGPEEITADIPN-----VG 858 NFED+IL+SER+V +D FT++HI+ +S+ +L +EI + + V Sbjct: 155 NFEDAILISERLVSDDLFTSVHIERYEIENIQKDGISQQERLTNKEINEKMKSKEKQTVA 214 Query: 859 EAAL----------------------SKLDESGIVYIGA----EVTG------------- 879 +A+ S+ +S I I E+T Sbjct: 215 RSAIRADENREYARKQNLKNSQTRQTSQKTKSNISQIRTTRYEEITRDIPDVTPEEICHL 274 Query: 880 ---GDILVGKVTPKGET---QLTP--------EEKLLRAIFGEKASDVKDSSLRVPNGVS 925 G + +G + +G+ ++TP +KLL I ++ +DSSLR P G+ Sbjct: 275 DSFGIVKIGSIVEEGDILVGKITPINKKDFTPYQKLLYTILDKQIRPYRDSSLRAPKGIK 334 Query: 926 GTVIDVQVFTRDG 938 VID+++F + G Sbjct: 335 AKVIDIKIFVKPG 347 >UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB1_LEPTE Length = 1142 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 122/253 (48%), Positives = 171/253 (67%), Gaps = 6/253 (2%) Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 Q++I I+ A++E FG + LSQFMDQ NPLSEITHKRRIS++GPGG+ R+ A +VR Sbjct: 885 QNLITTNAINGALQELFGLNPLSQFMDQINPLSEITHKRRISSMGPGGVNRDNASMDVRS 944 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI 609 +HPTHYGR+CPIETPEG N GL+NS ++YA+ N YGFLETP+ KV G + + YL+A Sbjct: 945 IHPTHYGRICPIETPEGHNAGLVNSPTIYARINNYGFLETPFFKVNSGQIQAKAFYLNAQ 1004 Query: 610 EEGNYVIAQANSNLDEEGHF------VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 +E + ++ + + E +E V R + + Q++++ +S Q++SV Sbjct: 1005 KEQKFKVSPPDLSCSELQFLPLGPTKIESEVPMRKDFKFQRMAATQIEFIGISPLQMISV 1064 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 SLIPFLEHDDANRALMG+NMQRQAVP L A++P+VGTG+E V DS K+ GV Sbjct: 1065 ATSLIPFLEHDDANRALMGSNMQRQAVPLLIAERPVVGTGLEGRVIADSSYIMQTKQSGV 1124 Query: 724 VQYVDASRIVIKV 736 + YV +++++ Sbjct: 1125 ISYVSNEQVIVQT 1137 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 10/116 (8%) Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV----------L 171 V +G +P MT G F+ING RV+++Q+ RSPG+++ + + S +V + Sbjct: 97 VLLGHLPFMTKRGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSHTSPV 156 Query: 172 YNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK 227 + + IIP RG+WL E D K N+++R+ R K+P + L+AL Y I L + + Sbjct: 157 FYSDIIPNRGTWLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSR 212 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD 443 LF++ FF+ YDLS +GR + N+ L +L++ DI K+LI D Sbjct: 281 LFQS-FFNPASYDLSPIGRFQLNKKLNLSIPSDYTVLTEFDIYFATKELIKRATTMSNSD 339 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAV- 502 DIDHL RRIRS GE+ E Q G+ R+++ + ++++ +L + S+++ Sbjct: 340 DIDHLQTRRIRSCGELLEIQLGEGIERLQKTIIDKINNTNLKKFAKHSSTYKRGTSSSIY 399 Query: 503 ---KEFFGSSQLSQFMDQNNP 520 ++ + + S+F+ N P Sbjct: 400 RQDRQVINTDKNSKFLKNNLP 420 >UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B8_CHLMO Length = 795 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 125/283 (44%), Positives = 183/283 (64%), Gaps = 2/283 (0%) Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 V +N R + + + L TL ++IN K ++A++EFFG+S LSQFM Sbjct: 510 VTTTTKNNTRASTKKTKPLLFGNLQKNQTKTLNISNLINNKSFNSALREFFGTSPLSQFM 569 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPL+EITHKRR+S++GPGG+TR+ A E+R +HPTHYGR+CP+ETPEG N GL+NSL Sbjct: 570 DQINPLAEITHKRRLSSMGPGGVTRDTATLEIRGIHPTHYGRICPVETPEGKNTGLVNSL 629 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 + Y++ N G LE+P+ +V G+V + YLSA +E + A+ + + Sbjct: 630 TNYSRVNSLGILESPFYRVYKGMVQKNLGLFYLSAEQEEKTKLGAADLFVSSIDFLENNN 689 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + R + + R+ V+Y+ VS Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP + Sbjct: 690 IPVRIGEKFTKIHRNLVEYVGVSPTQMISIATSLIPFLEHDDANRALMGSNMQRQAVPVI 749 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 R ++P+VGTG+E DSG ++ GV+ YV + +I+++ Sbjct: 750 RPERPIVGTGLESRAVSDSGHVIQSRFSGVITYVSSDKIIVRT 792 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 125/487 (25%), Positives = 212/487 (43%), Gaps = 95/487 (19%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEP 78 V +P L IQ SF +E+ GL F PI S + E+ + Y+L P Sbjct: 5 VYYLPDFLEIQRQSFFTLLEK------GLIDEFSKRNPITSKKKDVEVYFYPEYYKLTLP 58 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI 138 + ++ +R +Y++ L + +++ + I+ + Y+G +PLMT G F++ Sbjct: 59 TYSPRQAILRCKSYTSKLYMPVQITFKK-------TNTIRLKWAYIGNLPLMTKRGHFIL 111 Query: 139 NGTERVIVSQLHRSPGVFF---------DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 NG R+IV+Q+ RSPG+++ D K + + K Y A +I RG+WL E D Sbjct: 112 NGAPRIIVNQIIRSPGIYYQEKLYERFTDKLSDKPNVTYKRYY-ADLICLRGTWLRLEID 170 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 +++ + + K+P L + + IL+ E P+R+ Sbjct: 171 RDKDIWAQTKKGPKIPIYWYLIGMGLSEHIILNSILE----------------PQRILQN 214 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 A F ++ R + +++D ++ P + A K + Y++ S Sbjct: 215 LAPFTLD---------------RKSTRKKRNDYSYVKNPPD--AWKEI---YLELSR--- 251 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 ++E S S + + T D P T +VD N AL + Sbjct: 252 -SPKSVETSTSATTSKDNSLYSKGST----TKDESP--RRTNKVDARN----ALTSKKKS 300 Query: 370 MRPGEPPTREAAES----LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 ++ +EA+E LF N F + YDLS GR FNR L + E L+ D+ Sbjct: 301 LQ------KEASEQGRKWLF-NKFMNPRAYDLSRQGRAAFNRKLGLKIDENQLTLTAQDL 353 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL------ 479 + LI + G +DDIDHL NRR+R+ GE+ + Q + +VR+E+ ++E++ Sbjct: 354 LSATDYLIKVEKGLKPIDDIDHLKNRRVRTSGELIQIQIGIAVVRLEKTIREKINKTEMQ 413 Query: 480 ---SLGD 483 SLGD Sbjct: 414 FSFSLGD 420 >UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_CHLRE Length = 626 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 141/290 (48%), Positives = 189/290 (65%), Gaps = 40/290 (13%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 + +YLA KR++Q GDKMAGRHGNKG++S+I P +DMP+ +G VDIVLNPLGVPSRMN+ Sbjct: 316 IHIYLAEKRKMQVGDKMAGRHGNKGIVSRILPRQDMPFLPDGAAVDIVLNPLGVPSRMNV 375 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQI E LG+A + +G E K+ F + GAD + LS Sbjct: 376 GQIYECLLGLAGRYLG-----------EHYKIPPFDEM---YGADASRSFVLSK------ 415 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 +++ K+ +K LL D G+IRL+DGR E F++ VTVG Sbjct: 416 ----------------LYEARKKTGLKWLL---DPNHPGKIRLFDGRNSECFDQTVTVGI 456 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 Y+LKL H+VDDKMHARSTG YSLVTQQPL G+++ GGQR GEMEVWA+E YGAA+ L E Sbjct: 457 AYVLKLVHMVDDKMHARSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWAIEGYGAAFVLSE 516 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 MLT+KSDD+ GR ++KN+++ N ++ G PESF VL+ E+++L ++I L Sbjct: 517 MLTIKSDDMTGRQNLWKNLIE-NKEISLGSPESFKVLICELQALCLDIGL 565 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 94/195 (48%), Positives = 135/195 (69%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ P V G+ VE GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 96 YNLETYHRSNQDTCLIHKPAVKEGDWVEVGDLLADSASSIGGELAIGHNIIVAYMPWEGY 155 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T+IHI+ +++TKLG E+IT +IP++ E + LD++GI Sbjct: 156 NYEDAILINERLVYEDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGI 215 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGK+TP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 216 AKIGSWVEEGDILVGKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVIN 275 Query: 931 VQVFTRDGVEKDKRA 945 + + R ++ + ++ Sbjct: 276 INILARQKIQINTKS 290 >UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella terrestris RepID=B2X254_9CHLO Length = 808 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 123/247 (49%), Positives = 168/247 (68%), Gaps = 2/247 (0%) Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 D INA+ ++ A++EFFG+S LSQF+DQ NPL+EITHKRR + LGPGG++ + A VR Sbjct: 521 SDFINARYVNGALREFFGTSPLSQFLDQINPLAEITHKRRFTLLGPGGVSEDTATMAVRG 580 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLS 607 +HPTHYGR+CP+ETPEG N GL+N+L+ YA+ N G +ETP+ KV + + +LS Sbjct: 581 IHPTHYGRICPVETPEGKNAGLVNTLTGYARVNSDGLIETPFLKVFKSQIQKKKGFFFLS 640 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 +E V+A + ++ + G + + RS GE + S V +M VS Q++SV SL Sbjct: 641 PEQEEKSVLATGDLSISKTGFLPKGFLPARSLGEFTKVSSKSVGFMSVSPIQLISVATSL 700 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 +PFLEHDDANRALMGANMQRQAVP R+++P+VGTG E DSG AK GG V Y Sbjct: 701 VPFLEHDDANRALMGANMQRQAVPLARSEQPIVGTGTEAKAISDSGAAVRAKFGGFVCYA 760 Query: 728 DASRIVI 734 A+++V+ Sbjct: 761 SANKVVV 767 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 27/284 (9%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFDV 82 P +S+Q SF +F+E+ GL F PI + S +L + Y+L P ++ Sbjct: 9 PDFVSLQRKSFFRFLEK------GLVEEFSKRSPITNISKGLKLCFYPEFYKLVPPKWNP 62 Query: 83 QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 + + TYSA L V ++L ++ K+I + ++ ++PLMT+ G F++NG Sbjct: 63 NKAILYDRTYSAKLFVPVQLTSFK-------TKEIVFEWAFLCDLPLMTNRGHFLVNGVA 115 Query: 143 RVIVSQLHRSPGVFF----------DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 RVI++Q+HR PG+++ D + + S Y A +I RG+WL D K+ Sbjct: 116 RVIINQIHRGPGIYYTKTTKKKEILDVETDRKSFSNLTRYYADVISMRGNWLRLSVDSKN 175 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF--EIRDNKLQMELVPERLRGET 250 + + + K+P L E I + +N L EL E+ Sbjct: 176 RFWAEMKKTPKIPLLWFLLGTGLRKETIFSKINNSSLLYDSFCNNILLSELDQEKYFYVD 235 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 ++F V KG++ R L + K P Y G Sbjct: 236 STFSAHEKMSSLVLKGKQKNTGKKRNLREWFYKHFMNPRTYDLG 279 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 5/100 (5%) Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS-----GILSKDDIIDVMKKLIDIRNGK 439 F F + YDL GR+ NR L + + L+ D++ L+ + G Sbjct: 266 FYKHFMNPRTYDLGPHGRLCINRKLGLSFTQSALLNKMSTLTPYDLLFATDYLLKLLAGL 325 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 G DDID+L NRR+R+ + + Q +GLVR+E+ ++++L Sbjct: 326 GTTDDIDNLKNRRVRTSSDFIQLQIGIGLVRLEKKIRDKL 365 >UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB2_LEPTE Length = 880 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 138/290 (47%), Positives = 182/290 (62%), Gaps = 42/290 (14%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V+ YL KRRI GDKMAGRHGNKG+IS I P +DMPY +GTPVD+VLNPLGVPSRMN+ Sbjct: 617 VEFYLVDKRRIFVGDKMAGRHGNKGIISNILPKQDMPYLPDGTPVDMVLNPLGVPSRMNV 676 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+ ET LG+A K L Q +V E + E Sbjct: 677 GQVFETLLGLAGK--------YLHQHFKVTPFDE-------------------VYGPEAS 709 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIK-ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 L V+ EA +K + + D + G+ R++DG+TG F++ VT G Sbjct: 710 RSL-------------VYSKLYEARLKTDQNWIFDPKSPGKTRIFDGQTGANFDQAVTAG 756 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 Y YMLKL HLVD K+HARSTG Y+LVTQQP+ G+++ GGQR GEME WALEA+GA+Y LQ Sbjct: 757 YAYMLKLIHLVDHKIHARSTGPYALVTQQPVRGRSRAGGQRLGEMEFWALEAFGASYNLQ 816 Query: 1289 EMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EM+T+KSDD+ GRT+++ +I++ ++ PESF V + E+RSLG+N + Sbjct: 817 EMMTIKSDDILGRTQVFDSILNSK-PIQNSHPESFRVFINELRSLGVNFQ 865 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 10/124 (8%) Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 VD +R V + +E+ Y L Y RSNQ TCI Q P V LGE V++GD L D Sbjct: 44 VDKARDVYRAHENS----------YFLDHYIRSNQATCITQRPSVKLGEWVQKGDFLCDT 93 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 ++ GELALG+N+ VA+MPW+GYNFED+ILV+E ++ D +T++H+++ +T G Sbjct: 94 TASSAGELALGKNILVAYMPWHGYNFEDAILVNETLIIYDIYTSLHLEKFEIEIENTNWG 153 Query: 847 PEEI 850 PE I Sbjct: 154 PEII 157 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 9/151 (5%) Query: 801 RVAFMPWNGYNFEDSILVSERV-VQEDRFTTIHIQELACV--------SRDTKLGPEEIT 851 R +F YNF++ L E++ V + + +I+ L V ++ E + Sbjct: 458 RRSFRTLFPYNFKNMRLSCEKLFVNNNNWLINYIKSLDVVIGGEIYRPGNKLQINLEYLN 517 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 V + LD GI+ +G V GDI+V K+ P G TP EKL+ AI +K Sbjct: 518 FKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRPIGPHNPTPLEKLVAAILKKKFD 577 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 D K+++ P V G ++ +++ + D Sbjct: 578 DYKNAAFYTPKDVYGRIVGIEILEPKNLPSD 608 >UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax=Chlorella vulgaris RepID=RPOB_CHLVU Length = 1301 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 136/290 (46%), Positives = 181/290 (62%), Gaps = 40/290 (13%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V+V L +R+IQ GDKMAGRHGNKG++S I P +DMPY +GTPVDIVLNPLGVPSRMN+ Sbjct: 1022 VRVLLLQRRKIQVGDKMAGRHGNKGIVSLILPRQDMPYLPDGTPVDIVLNPLGVPSRMNV 1081 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQILE LG+A + ++ L +Q GA+ + + S Sbjct: 1082 GQILECLLGLAGHFLHERYTTYLFDEQ--------------YGAEASRSLVYSKLYQA-- 1125 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 +L+ P VF+ G+IR++DGRTG F++P+T GY Sbjct: 1126 -----SLKTRNPW---VFEPHH---------------PGKIRVFDGRTGLTFDQPITAGY 1162 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 Y+LKL HLVDDK+HAR TG YS +TQQP+ G+A+ GGQR GEMEVWAL+AYGAA+TL E Sbjct: 1163 AYILKLVHLVDDKIHARPTGPYSAITQQPVKGRARNGGQRLGEMEVWALQAYGAAHTLHE 1222 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TVKSDD++GR + NI N + G PESF ++L+E+++L N ++ Sbjct: 1223 FFTVKSDDLDGRQQAVLNIY-ANKPVTTGNPESFKLILRELQALCFNFQV 1271 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 16/372 (4%) Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 + A F + +++D+ L +GR +F + E + L+++D+++ + L+ + + Sbjct: 291 QTAREFFYSTLWNKDKLILGHIGRQQFREKIGSIEPLENTSLTREDLLEATQALLSLMHK 350 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL-----------GDLDTL 487 K VD+ID L +RIR E G+ E + +++ +L Sbjct: 351 KRVVDEIDSLTQKRIRGCDEFLLEHLATGMKEFELFFRRKVTFLPATKSITGAENPFRSL 410 Query: 488 MPQD-MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 Q+ + +K +S + K FF S L QFMDQ N L+E THKRR++ LGPGG++ ++ + Sbjct: 411 WRQNKAVFSKTVSKSWKRFFTSGTLGQFMDQTNSLAETTHKRRLTVLGPGGISGKQTTIQ 470 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG--FLETPYRKVTDGVVTDEIH 604 +R +HPT+YGR+CPIETPEG N GL+NS +V + ++YG L TP+ +V G V + Sbjct: 471 IRGIHPTYYGRLCPIETPEGKNAGLVNSFTVLSVLSKYGARTLTTPFYQVYKGQVQKTLP 530 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS--RDQVDYMDVSTQQVVS 662 L Y + +A +++ V + E + S ++ V Q +S Sbjct: 531 PLRVSPRQEYKLIEAPADIQLTAWNVLPKTHLPVRKELNFHSDVATRITTQSVGILQNIS 590 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 V SLIPFLEH+DANRALMG+NMQRQAVP L+ PLVGTG+E V D + A + G Sbjct: 591 VATSLIPFLEHNDANRALMGSNMQRQAVPLLKPQAPLVGTGLESRVIGDVNHSMQASKTG 650 Query: 723 VVQYVDASRIVI 734 + V +++I + Sbjct: 651 FITKVSSTKIQV 662 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 124/192 (64%), Gaps = 9/192 (4%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L +Y R+NQ+TC ++ P + E VE+GD+LADG S+ G+L++GQN+ VA++PW GY Sbjct: 811 YSLIQYQRTNQSTCFSERPILPENEWVEKGDLLADGASSSQGKLSIGQNVLVAYLPWEGY 870 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP-NVGEAA-----LSK 864 NFED+IL+S+R+V ++ FT++H+ ++T+ G E IT IP + ++ + Sbjct: 871 NFEDAILISQRLVDQEIFTSLHMDHYDIAVQNTQYGLERITNLIPLKISDSTRDIYKMGN 930 Query: 865 LDESGIVYIGAEVTGGDILVGKVT---PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 LD G+V IG+ V GD LVGK++ PK +P EKL I + + +++SLRVP Sbjct: 931 LDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPLQSPHEKLYNVILQREKTSFRNTSLRVP 990 Query: 922 NGVSGTVIDVQV 933 GV G V+ VQ+ Sbjct: 991 KGVQGFVLGVQI 1002 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 21/195 (10%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPV 79 +++P L+ +Q SF FIE YGL+ AF+ + + E+++ + +P Sbjct: 40 MEIPNLIDVQRQSFYSFIE------YGLKEAFQKPLRFSTTKHDLEIRFFPEGIQFRKPD 93 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 F ++ + G Y + V + + I+ +++ + + +++G +P+MT G FV+N Sbjct: 94 FTQKQAVVLGKIYGSA--VYIPVGIHSKKS-----STFRIEWLFVGILPIMTRQGHFVVN 146 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL-FVRI 198 G RV++ Q+ R+PG++ H K+ RI+P +G W+ D K + F+ Sbjct: 147 GVSRVVLHQMVRNPGIY----TLPIHPRTKI-GTLRIVPEKGGWIHITVDKKHRVWFLTR 201 Query: 199 DRRRKLPATIILRAL 213 RRK+ I L+A+ Sbjct: 202 SLRRKVSLLIFLQAV 216 >UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax=cellular organisms RepID=Q1JNX7_STRPC Length = 249 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/258 (51%), Positives = 164/258 (63%), Gaps = 54/258 (20%) Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MPY +GTPVDI+LNPLGVPSRMNIGQ++E HLGMA Sbjct: 1 MPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMA------------------------ 36 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 A NL G+ IATPVFDGA ++ + ++ + Sbjct: 37 ----------------------------ARNL--GIHIATPVFDGASSEDLWDTVREAGM 66 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 + + LYDGRTGE F+ V+VG MYM+KL+H+VDDK+HARS G YSLVTQQPLGGKAQ Sbjct: 67 DSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQ 126 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 FGGQRFGEMEVWALEAYGA+ LQE+LT KSDDV GR K Y+ I G +PG+PESF Sbjct: 127 FGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFR 186 Query: 1325 VLLKEIRSLGINIELEDE 1342 VL+KE++SLG+++ + DE Sbjct: 187 VLVKELQSLGLDMRVLDE 204 >UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=Rhodospirillales RepID=D1GLJ0_GLUDI Length = 325 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/327 (43%), Positives = 194/327 (59%), Gaps = 29/327 (8%) Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+INGTERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++ Sbjct: 1 FIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVIPYRGSWLDFEFDSKDLIY 60 Query: 196 VRIDRRRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIF 230 VRIDR+RKLP T +L AL ++IL F+ +V+F Sbjct: 61 VRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGDVDALEIRGMDADEILGYFYNQVVF 120 Query: 231 EIRDNKLQMELVPERLRG-ETASFDIEA-NGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 E RG + ++A +G+V E ++TAR +R++ + +++ P Sbjct: 121 TKGPKGWARPFDAESFRGLKLLEPLVDAQSGEVVAEADAKLTARMVRKIAETTKEVLVGP 180 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G+ VA D ++ TGE+ A EL+ L L ++G ++ TL D +GP+I Sbjct: 181 AGLI-GRYVAHDLVNMETGEIYAEAGEELTEARLEALEEAGVDQLPTLAV-DASNGPWIR 238 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 TL VD R AL +IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR+K N Sbjct: 239 NTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMFSGLFFDADRYDLSAVGRVKMNMR 298 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDI 435 L + + +L K+DI+ +K + ++ Sbjct: 299 LGLDAPDTIRVLRKEDILRTVKIMCEL 325 >UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z2_OEDCA Length = 739 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 145/332 (43%), Positives = 199/332 (59%), Gaps = 52/332 (15%) Query: 1017 QYDELKHEFEKKL------EAKRRKITQGDDLAPGVLK----IVKVYLAVKRRIQPGDKM 1066 Q+ +L+ + +KK EA++ + + D + + + VYLA KR+IQ GDK+ Sbjct: 442 QFQKLRQKKDKKFYSINNDEAEQNVLPRKKDFSLNLFNSKPFTIHVYLAEKRKIQVGDKI 501 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKG++SKI PI+DMPY +G+ VD+VLNPLGVPSRMN+GQI E LG+A +G Sbjct: 502 AGRHGNKGIVSKILPIQDMPYLADGSFVDLVLNPLGVPSRMNVGQIYECLLGLAGYYLG- 560 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 E ++ F ++ EE R + V Sbjct: 561 ----------EYYRILPFDEKI-----------------GEEASR------------SFV 581 Query: 1187 FDGAKEAEIKE-LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 F EA +K L D G+ L+DGRTGE+FE+ V +GY Y+LKL HLVDDK+H+ Sbjct: 582 FSKLYEAGMKTGNYWLFDPKNPGKTYLFDGRTGEKFEQQVMIGYAYILKLVHLVDDKIHS 641 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 RSTG YS VTQQPL G+++ GGQR GEMEVWALE YGAA+TL E+LT+KSDD GR ++ Sbjct: 642 RSTGPYSAVTQQPLRGRSKQGGQRLGEMEVWALEGYGAAFTLLELLTIKSDDKIGRLTIW 701 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 +I+ ++ PESF VL+ E+++L +I Sbjct: 702 DSILR-QKEISIKTPESFKVLVCELKALCFDI 732 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 126/187 (67%), Gaps = 2/187 (1%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L Y RSNQ+TC+ P ++ G V+ GD+LAD S+ GELA+GQN+ +A+MPW GY Sbjct: 11 YHLENYHRSNQDTCLVHRPTINEGNWVQPGDILADCSSSKNGELAIGQNILIAYMPWEGY 70 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED++L+S+R+V ++ +T+IHI+ +T+ G E+IT ++ ++ LS LD++GI Sbjct: 71 NYEDAMLISDRLVYDEIYTSIHIERYEISIEETQFGFEKITKELYDLPGENLSHLDKNGI 130 Query: 871 VYIGAEVTGGDILVGKVTPK-GETQLTPEEKLLRAIFGEKASDV-KDSSLRVPNGVSGTV 928 +G+ + GDILVGKVTP + + + EKLL I G K + KD+SLRVP G+ V Sbjct: 131 TVLGSWLKEGDILVGKVTPTDKKVKYSNYEKLLYDILGTKKQNKGKDTSLRVPKGLEAKV 190 Query: 929 IDVQVFT 935 I +++ + Sbjct: 191 ITIEILS 197 >UniRef50_C6H0E8 RNA polymerase subunit B (Fragment) n=1 Tax=Acinetobacter sp. G13 RepID=C6H0E8_9GAMM Length = 287 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/289 (47%), Positives = 184/289 (63%), Gaps = 16/289 (5%) Query: 957 KKDLSEELQILEAGLFSRIRAVLVA----GGVEAEKLDKLPRD--------RWLELGLTD 1004 +KDL EE +I E R+ +L GG ++ DKL D LE+ D Sbjct: 2 RKDLKEEFKIFEEAARERVIRLLNGQESNGGGTTKRGDKLSEDVLSGLELVDLLEIQPVD 61 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 E +L Q+ E E ++K K+RK++ GD+L GVLK+VKVYLAVKRRIQPG Sbjct: 62 EAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRRIQPGX 121 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 PVDIVLNPLGVPSRMN+GQILETHLGMAAKG+ Sbjct: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXVPVDIVLNPLGVPSRMNVGQILETHLGMAAKGL 181 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYD-LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 GD+I+ M+K+Q+ V +LR+F+ + Y+ +G ++ DL + +DEE+++L+ NLR G+P+A Sbjct: 182 GDQIDKMMKEQRTVLELRDFLDKIYNKVGG---EQEDLDSLTDEEILKLSGNLRAGVPLA 238 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 TPVFDGA+E +IKELL+L L ++GQ LYDGRTGE+F+RPVTVGYMYM Sbjct: 239 TPVFDGAEEGQIKELLQLAGLSSTGQTVLYDGRTGERFDRPVTVGYMYM 287 >UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWJ9_MONSK Length = 2108 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 144/332 (43%), Positives = 192/332 (57%), Gaps = 41/332 (12%) Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 ++ K G+ V ++LA K+RIQ GDKM+GRHGNKG++S I P +DMPY ++G Sbjct: 1672 EKHKTLIGEGFIQSAATSVSIFLAHKKRIQLGDKMSGRHGNKGIVSLILPPQDMPYLQDG 1731 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 PVD+VLNPLGVPSRMN+GQ+LET G++A K+ ++ + +A + + Sbjct: 1732 KPVDVVLNPLGVPSRMNVGQVLETLFGLSA-FYSHKVYRIMPFDERIAPSQSIEKNTLQE 1790 Query: 1152 GADVRQKVDLSTFSDEEVMR--LAENLRKGMPIATPVFDGAKEAEIKEL-LKLGDLPTS- 1207 A + + S E R + +LRK + T K AEI EL L+ G P + Sbjct: 1791 NASL-------SLSRPETSRSLVYGHLRK---LKTKAGVPPKRAEISELGLQKGGYPRTL 1840 Query: 1208 ------------------GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG 1249 G+ L+DGRTGE F +P VGY YM KL HLVDDK+HARSTG Sbjct: 1841 KSIKKGSQLNWLFDPNNPGKTHLFDGRTGEIFYQPALVGYSYMFKLIHLVDDKIHARSTG 1900 Query: 1250 SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV 1309 YSLVTQQPLGG+++ GGQR GEMEVWALE +G A LQE LTVKSD++ R +++ Sbjct: 1901 PYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFGTASILQEFLTVKSDEIYSRNNFLFHLM 1960 Query: 1310 DGNHQ-MEPGMPESF-------NVLLKEIRSL 1333 N + +E ESF V +E+RSL Sbjct: 1961 RRNWESLEKNENESFARDAIKARVAGEELRSL 1992 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 134/233 (57%), Gaps = 39/233 (16%) Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 + + Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP + +K VGTG+E A D Sbjct: 1119 FTGICPIQLISIATSLIPFLEHDDANRALMGSNMQRQAVPFMTPEKAFVGTGLELQAARD 1178 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKV-------NEDEMYPGEAG----------------- 747 S +A G + +VD+ I +K +E PG G Sbjct: 1179 SSTLVLADESGQILFVDSQSIKLKTEKHGRTFSELRSPPGTKGQRPQWGKLSLDLKDQSA 1238 Query: 748 ---------------IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 I Y LT +T SNQ+TC+ Q P V +GE VE+G +LADG T G Sbjct: 1239 HPIEFSPERGGFSKEISSYELTDFTPSNQSTCLKQRPAVEIGEWVEKGSLLADGSGTRDG 1298 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 E+ALG+N+ +A+MPW GYNFED+I+++ER+V ED +T++H++ R+TK+ Sbjct: 1299 EVALGKNVLLAYMPWEGYNFEDAIVINERLVFEDIYTSVHVERFDVDVRNTKI 1351 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 56/91 (61%), Positives = 78/91 (85%) Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 + ++E F + QLSQ+MDQ NPL+EITHKRR+S+LGPGG+ R++AGF VR++HP+H+GR+C Sbjct: 874 STLRELFNTGQLSQYMDQTNPLAEITHKRRLSSLGPGGVGRDQAGFAVREIHPSHFGRIC 933 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 PIETPEG N GL+ SL+ YA+ N+ GFL++P Sbjct: 934 PIETPEGQNAGLVGSLASYARINDDGFLQSP 964 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 4/95 (4%) Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 Y G+IPLMT+ G+F+ING RV+V+Q+ R P V+F K K + Y A + G Sbjct: 368 FYFGDIPLMTERGSFIINGAPRVLVNQIIRCPSVYF---KVKLDQKNRRSYTASFLSEYG 424 Query: 182 SWLDFEFDPKDN-LFVRIDRRRKLPATIILRALNY 215 SWL E D N L+ RID+ + PA I+L L Y Sbjct: 425 SWLRLETDRLSNRLWARIDKSPRFPADILLMGLGY 459 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 +AL +++ PG + S F N F + RY + VGR++ N+ L R L Sbjct: 676 TALQALWKKCNPGRWTSALGCYSFFYNKFLNPKRYSIGRVGRIRLNKRLRRNPECKIPTL 735 Query: 421 SKDDIIDVMKKLIDIRNGKG-------EVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 + +D++ L +++ E+DDIDHL NRR+R GE+ +NQFR+ L R+ Sbjct: 736 TPEDVLLAFHYLTELKIADAKENTFSLELDDIDHLKNRRVRLPGEILQNQFRLALSRI 793 >UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Tax=Roseobacter sp. GAI101 RepID=B7RK98_9RHOB Length = 309 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/220 (52%), Positives = 156/220 (70%), Gaps = 4/220 (1%) Query: 105 YEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 + RE VKDIKEQ+V+MG++PLMT NGTFV+NGTERVIVSQ+HRSPGVFFD DKGKT Sbjct: 46 FTREVRRVAVKDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKT 105 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 HSSGK+L+ RIIPYRGSWLDFEFD KD +F RIDRRRKLP T +L AL E I+D + Sbjct: 106 HSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAY 165 Query: 225 FEKVIFEIRDNK-LQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQL-EKD 280 ++ V + ++ + P+R+RG ++D+ A G+V EKG+++T R ++QL ++ Sbjct: 166 YDTVTYTLKAGEGWVAPFYPDRVRGTRPTYDLIDAATGEVLFEKGKKVTPRAVKQLVDEG 225 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + +P E+I GK A+D I+E TG + E++L+ Sbjct: 226 KVSELVLPFEHIVGKFAARDIINEETGAIYVEPGDEMTLE 265 >UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=Neoasaia chiangmaiensis RepID=D1GLP0_9PROT Length = 287 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/290 (45%), Positives = 171/290 (58%), Gaps = 31/290 (10%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 TERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++VRIDR Sbjct: 1 TERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAARVIPYRGSWLDFEFDAKDLIYVRIDR 60 Query: 201 RRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDN 235 +RKLP T +L AL ++IL F+ +V F Sbjct: 61 KRKLPVTTLLYALEGENSIAARAAKAEEGGDVDAMPIRGMDQDEILGYFYNEVPFTRMPK 120 Query: 236 KLQMELVPERLRGET---ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 PE RG +D + G+V E ++TAR +R++ ++ +++ V + Sbjct: 121 GWARPFDPEAFRGLKLLEPLYDAD-TGEVVAEADAKLTARAVRKI-AENTRVVLVGRADL 178 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ VA D ++E TGE+ A EL+ LA L +G + L + D HGP+I TL Sbjct: 179 LGRFVAHDLVNEHTGEIYAEAGEELTEARLAALEDAGVTELPML-SVDGQHGPWIRNTLA 237 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 VD R ALV+IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR Sbjct: 238 VDKNMSRDDALVDIYRIMRPGEPPTPETAEAMFRGLFFDPDRYDLSAVGR 287 >UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOB_HELSJ Length = 1247 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 43/456 (9%) Query: 416 GSGILSKDDIIDVMKKLI-DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 S L + D I + K I + N + ++ D+L N R R+ G+ Q R GL E Sbjct: 311 NSLFLEEIDFIYITKIFIYRLINNNFKDENNDNLKNMRFRNGGDYIYLQTRQGLFDFESF 370 Query: 475 VKERLSLGDLDTLMPQDMINAKP--------------------------ISAAVKEFFGS 508 + L + ++ N K + + K FF S Sbjct: 371 LNINLHNIENNSFFCNITTNKKKEDIYSIKKKKNIKNFNLSKISFLKHILLKSWKSFFLS 430 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 LSQF + NPLS ITH RR ++LGPG L + A EVR ++P++ GRVCPIETPEG N Sbjct: 431 GTLSQFAENLNPLSYITHARRFTSLGPGSLKKAEASIEVRSINPSYNGRVCPIETPEGFN 490 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI-----EEGNYVIAQANSNL 623 GL++S S+Y+ G L P+ + + + +YL I EE N I + Sbjct: 491 AGLVHSFSLYSFKGVNGELLLPFYFIYKNI--KQSYYLPPIFFNIEEESNQSIITGDLIH 548 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 ++ F+ ++ R+ ++ + +S ++S+ SLIPFLEH+DANRALMG+ Sbjct: 549 EKWNDFLNKKLSLRNNFHLDKNDISKISFQSLSPYHMISLATSLIPFLEHNDANRALMGS 608 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 NMQRQ VP L A +V TG++ D +++ G N Y Sbjct: 609 NMQRQTVPVLGAHNFIVRTGLDTKFFSDISSIPISQINGF-------NFESNNNYCYFYK 661 Query: 744 GEAGIDIYNLT-KYTRSNQNTCINQMPCVSLGEPV-ERGDVLADGPSTDLGELALGQNMR 801 + I + N++ Y + + + + P ++GD L + + G+LALG N+ Sbjct: 662 IDNLITLNNISYNYIKKTNHNSLYINESIKKKNPWHQQGDFLINNSVIENGKLALGPNLL 721 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 +A++PW+GYN+ED+++++ER V + T++HI L Sbjct: 722 LAYLPWHGYNYEDAVIINERCVSQKILTSLHIITLT 757 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 109/279 (39%), Positives = 160/279 (57%), Gaps = 43/279 (15%) Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R IQ GDK AGRHGNKG+ISKI PI +MP +GTP+DI+LNPLG+PSRMN+GQI E+ L Sbjct: 986 RDIQLGDKCAGRHGNKGIISKICPINEMPLLPDGTPIDIILNPLGIPSRMNVGQIFESLL 1045 Query: 1118 GMAAKGIGDKINA-MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 G+A + + + +Q + R F+ + + S S++ + L +N Sbjct: 1046 GLAGFYLNETYTINIFDEQFGLEASRSFV---------LSKLYKASILSNKPWLFLKKN- 1095 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 +G+ + DG TG+ F++P+T+GY +LKL Sbjct: 1096 ------------------------------AGKTNIIDGLTGKYFQQPITIGYSSILKLI 1125 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK+H RS G YS +T QP GK+ GGQR GEME+WAL+ YGA++ LQE+ T+KSD Sbjct: 1126 HMVTDKLHGRSIGGYSTLTLQPTKGKSLLGGQRVGEMELWALQGYGASWALQELYTLKSD 1185 Query: 1297 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 V R + ++N ++ +E + + ++ L E+ SL I Sbjct: 1186 LVEAR-QHFQNYINS-FNIESNIYDRNDISLTELESLII 1222 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%) Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHS----SGKVLYNARIIPY 179 +G +P ++ +F I+G R + +Q +SPG+ FD D K S G+ +II Sbjct: 122 LGILPSLSPKTSFYIDGISRAVSTQKKKSPGLMFDFDLTKKSSLEKREGEAF--LKIIAP 179 Query: 180 RGSWLDFEFDPKDNLFVRI-DRRRKLPATIILRALNYTTEQILDLF 224 RGSW + +F+ I + K+P L AL ++ E I F Sbjct: 180 RGSWFKISYSEDHIIFIEIRNIAYKIPIFTFLCALGFSLESIFQFF 225 >UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax=Eimeriorina RepID=RPOB_EIMTE Length = 1059 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 145/559 (25%), Positives = 264/559 (47%), Gaps = 19/559 (3%) Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLR--EEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 S F NL F + Y + K N SL + S L D I+++ L+DI+ K Sbjct: 232 SFFFNLSFKLNTYYIFNKVLNK-NNSLYSYIKNFSNSNNLIALDFINILDILLDIKYNKK 290 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPI 498 + D+D L R I ++G NQ+ L + + + + +L+ + Sbjct: 291 NITDLDLLEYRSIFTLGNYFTNQYSFYLKKFSNILHNDIFKCIKNLEKYKLNTNSFKSKL 350 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 +KE+ + L Q+++Q N SEI HK R++ ++ + ++R+++ G + Sbjct: 351 YFNLKEYLTVNPLVQYLEQINSFSEIIHKNRVTNYN----SKLKQNLQIRNINLNQLGSL 406 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 C I+T EG N GL+ S + + + + PY V + + I ++++ + Y++ Sbjct: 407 CLIDTTEGINCGLVISFTKNIKIEKRNNFQFPYLPVLNIKTKNFITFINSFLQQTYIVLF 466 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 N L + F +K L + + + + + S +LIPF+ ++D R Sbjct: 467 NNYYLRKNKLF-NFFNLSLNKNSFKLKNISIQNMIYIKPMDMFSFAENLIPFIFYNDPAR 525 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 LMGA MQ Q VP L+ + ++ TG E+ + + + A + G+V YV + +I+I+ Sbjct: 526 VLMGAKMQSQIVPILKNKRSIIITGYEKNLLNSTNLILKAYQEGIVVYVSSYKIIIR--- 582 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 ++Y + Y L KY RSN T ++ P V GE + G +L E G Sbjct: 583 -DLYNRKIT---YFLDKYKRSNHFTILHSKPNVWQGERIFCGQILTSTQDILFSEYIGGN 638 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD-TKLGPEEITADIPNV 857 N+ V++ + GYNFED+I+++++++ FT++H + + K E T ++P Sbjct: 639 NLLVSYGNFFGYNFEDAIVLNKKIIYSQLFTSLHFKVYEIIFNSLNKFSFEISTINLPKK 698 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG-ETQLTPEEKLLRAIFGEKASDVKDS 916 + LD GI+ G++V DILV K+ L P L+ +FG++ ++KD Sbjct: 699 SFYSKRNLDFFGIIKEGSKVLNNDILVSKIFITNINISLLPLYNLIYILFGKEIKNIKDK 758 Query: 917 SLRVPNGVSGTVIDVQVFT 935 S+ V G SG ++ ++F+ Sbjct: 759 SILVSFGNSGRIVKTELFS 777 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 154/290 (53%), Gaps = 42/290 (14%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 +VY+ +R + GDK+ GR+GNKG+I+ I P D+PY G DI+ + LG+PSRMNI Sbjct: 792 CRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNTGIIPDIISDSLGIPSRMNI 851 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+ E G++ + R I ++L KV + T + Sbjct: 852 GQLFENLFGLSCYFLNK---------------RLCISNTFNL-----PKVYIKTILYNYI 891 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 + E + G L + + + G+I L DGR G + P +G Sbjct: 892 NNIKE--KSGN------------------LWIYNSYSPGKILLRDGRQGYKLSEPSFLGI 931 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 KL H++ DK+H R+ G Y+ + QQP+ G+ + GGQRFGEME+WA+EAYG++Y L+E Sbjct: 932 SKYSKLIHMIKDKIHYRTIGPYTELMQQPVKGRNKKGGQRFGEMEIWAIEAYGSSYNLRE 991 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINIE 1338 +L KSDD+ RT + N+ D N ++ ESF L++EI S+ +NIE Sbjct: 992 LLNYKSDDIIARTSLLSNL-DNNIILDNITTTESFRTLIREIHSMNLNIE 1040 >UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Tax=Sarcocystidae RepID=RPOB_TOXGO Length = 1051 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/495 (27%), Positives = 247/495 (49%), Gaps = 30/495 (6%) Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKE 504 IDHL N+ I ++G ++ F+ L + + + L L + KE Sbjct: 292 IDHLDNKHINTIGNYFQHNFKFYLKKFISIIPNLIKLQKFSLLKVYNF----------KE 341 Query: 505 FFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 + L Q+++Q N SE+ HK +++ + + +R++ G++C I+T Sbjct: 342 LLILNPLIQYLEQINSFSELMHKYKLNNYN----SFSKGILNLREICLNQLGKLCLIDTT 397 Query: 565 EGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD 624 EG N GL+ S + + + + G ++ + + + +++ +++++ Y+I N NL Sbjct: 398 EGINCGLVVSFAKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQELYLIQFNNINLR 457 Query: 625 EEGHFVE-DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 + + + LV ++ FS + ++ + + S +LIPF++++D R LMGA Sbjct: 458 KIKYLMNVRLVYNKNNFRIKFFSNKKSILLEFT--DLFSFTENLIPFIKYNDPARCLMGA 515 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 MQ Q+VP L K V TG E+ + S T A + G+V ++AS + K++ +++ Sbjct: 516 KMQSQSVPLLNKKKSFVITGYEKEIITKSDTTIKALQEGIV--LNASSL--KIHIKDLFN 571 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 E +Y L+KY +SNQNT I+Q P V GE V +L E A+G N+ Sbjct: 572 REI---VYYLSKYKKSNQNTIIHQKPLVWNGERVFTNQLLTQHQDIIDSEFAIGNNLLFY 628 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIH--IQEL-ACVSRDTKLGPEEITADIPNVGEA 860 + + GY+FED+++VS+RV+ + F+++H I E C + + + E T +IP Sbjct: 629 YGNFCGYDFEDAVIVSKRVLYQQLFSSLHMDIYEFNFCYNNENDI--EFSTLEIPKQSYY 686 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKV-TPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 LD GI+ G ++ G IL+ K+ K KL+ +IFG+ ++KD+SL Sbjct: 687 IKKNLDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSLY 746 Query: 920 VPNGVSGTVIDVQVF 934 + G SG V +++F Sbjct: 747 IQTGKSGRVSKIELF 761 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 154/291 (52%), Gaps = 39/291 (13%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 ++++ +R + GDK+ GR+GNKG++S I D+P+ +N DI++ LG+PSRMN+ Sbjct: 781 CRIFICKQRFLTVGDKLCGRYGNKGILSYIAENADLPFLQNSFYPDIIVGALGIPSRMNL 840 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+ E +G + ++R +T S+ Sbjct: 841 GQLFEALVGKIS-----------------------------FSYNIRILPSFTTSSN--- 868 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 L N K + +F+ K+ L +LP IR DGRTG + + V G Sbjct: 869 --LYFNYLKILIYNFLMFNNFKKGF--NWLYNFNLPGKFIIR--DGRTGVKLKSSVLCGV 922 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 KL HL+ DK+H R+TG Y+ + QQPL GK GGQRFGEME+WALEA+GA+Y L+E Sbjct: 923 SRYSKLIHLIKDKLHFRTTGPYTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYNLKE 982 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGINIEL 1339 +L KSDD R + + ++ N +++ + ESF V+LKE L +N+EL Sbjct: 983 ILNYKSDDCFARNNLKEYLLFRNTELQNSTITESFRVILKEFNGLILNLEL 1033 >UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=Firmicutes RepID=D0V9L6_9BACI Length = 481 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/220 (46%), Positives = 150/220 (68%), Gaps = 17/220 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 10 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V+E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 64 LEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F GK +GK + A +IP RG+WL++E Sbjct: 117 PIMTDTGTFIINGAERVIVSQLVRSPSVYF---SGKVDKNGKKGFTATVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFE 226 D KD ++VRIDR RKLP T++LRAL + ++Q ILDL E Sbjct: 174 TDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGE 213 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 60/106 (56%), Positives = 84/106 (79%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DII + ++ +G G+ DDIDHLGNRR+RSV E+ +NQFR+GL R+ER V+ER+ Sbjct: 376 ITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVCELLQNQFRIGLSRMERVVRERM 435 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 436 SIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 481 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 Y+ TL D T + AL+EIY +RPGEPPT E A+SL ++ FF RYDL+ VGR K Sbjct: 216 YLRNTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKI 275 Query: 406 NRSL 409 N+ L Sbjct: 276 NKKL 279 >UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVW5_9CHLO Length = 1310 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 146/217 (67%), Gaps = 10/217 (4%) Query: 389 FFSEDRYDLSAVGRMKFNRSL-LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 F + YDL +GR + N L LR + IL+ D + + +L+D+ N + VDDID+ Sbjct: 276 FLNPQIYDLGIMGRKRLNSKLGLRTK---KTILTPSDFLKITYRLLDLTNHQDVVDDIDN 332 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD-LDTLMPQDMINAKPISAAVKEFF 506 LGNRRIR+VGE+ + QF R+ + ++E++ + +D++ +P+++ ++EFF Sbjct: 333 LGNRRIRTVGELLKIQFFQATFRLNKILEEKIKKTESMDSIF-----TTRPMNSVLREFF 387 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 GS QLSQF+DQ NPLSE+THKRRIS LGP G+ RE AG ++R +H T++GR+CPIETPEG Sbjct: 388 GSCQLSQFLDQTNPLSELTHKRRISCLGPNGIQRETAGMDIRGIHSTYFGRICPIETPEG 447 Query: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 N GL+NSL++++ N GFLE+ + K+ G + ++ Sbjct: 448 QNAGLVNSLTIFSTKNADGFLESIFYKIYKGQIQKQL 484 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 4/112 (3%) Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG-KVLYN 173 K I+ Q V++G +PLMT G F+ING RVIV+Q+ R+ GV++ K G K +Y Sbjct: 122 KKIRFQWVFLGNLPLMTKRGHFIINGAPRVIVNQIIRAAGVYYQQQVNKVIKKGQKQIYR 181 Query: 174 AR---IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD 222 II YRG WL FE D K ++V + + K+P + L+ + ++ + IL Sbjct: 182 TFYVDIISYRGVWLRFELDKKRQIWVCMKKTPKMPIFVFLKFMGFSKKNILS 233 >UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular organisms RepID=B2X2B9_CHLMO Length = 1661 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 125/187 (66%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L KY RSNQ+TC+ P V G+ VE GD+LAD ++ GELALGQN+ + +MPW GY Sbjct: 263 YSLEKYHRSNQDTCLVHKPAVVEGQWVESGDLLADCSASVGGELALGQNILIGYMPWEGY 322 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 NFED+IL+SER+V +D +T+IHI+ ++KLG ++IT +IP V +L L+ GI Sbjct: 323 NFEDAILISERLVYDDLYTSIHIERYEVNIEESKLGMDKITREIPEVDSDSLKNLNSLGI 382 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 + IG+ V GDILVGKVTP + + +KLL I + S V+DSSLR P G+ VI Sbjct: 383 IKIGSWVQEGDILVGKVTPVNKKNQSNYQKLLYLILDKTVSPVRDSSLRAPKGIKAKVIG 442 Query: 931 VQVFTRD 937 +QVF + Sbjct: 443 LQVFKNN 449 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 115/196 (58%), Gaps = 39/196 (19%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 ++VYLA +RR+Q GDKMAGRHGNKG+IS+I PIED+P+ +GTP+D+VLNPLGVPSRMN+ Sbjct: 712 IQVYLAERRRVQVGDKMAGRHGNKGIISEILPIEDLPFLPDGTPLDMVLNPLGVPSRMNV 771 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQI E LG+A K +G+ +V E GA+ + S + V Sbjct: 772 GQIYECLLGLAGKHLGENY--------KVFPFDEI------YGAEASRSFVYSKLYNASV 817 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 + G K L +LP G+I LYDGRTGE F + +TVGY Sbjct: 818 -------KTG----------------KTWLFNPNLP--GKIGLYDGRTGESFHQAITVGY 852 Query: 1230 MYMLKLNHLVDDKMHA 1245 Y+L+L H+VDDKMH Sbjct: 853 AYILRLVHMVDDKMHC 868 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 56/96 (58%), Positives = 77/96 (80%), Gaps = 1/96 (1%) Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 ++RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLT+KSDD++GR Sbjct: 1562 NSRSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGYGAAFTLLEMLTIKSDDMSGRMT 1621 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 ++ N++ N ++ G PESF VL+ E+++L ++I L Sbjct: 1622 LWSNLIL-NKEISIGTPESFKVLICELQALCLDIGL 1656 >UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyanobacteria RepID=Q5W438_OSCAG Length = 220 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 129/218 (59%), Gaps = 27/218 (12%) Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 +A + + D EG + D+V R + E + + QVDY VS Q+VSV SLIPFLEHDD Sbjct: 3 VAPGDISTDAEGTILGDIVPVRYRQEFTTTTPMQVDYAAVSPVQIVSVATSLIPFLEHDD 62 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK 735 ANRALMG+NMQRQAVP LR ++PLVGTG+E A DSG+ V++ G + Y+D SRI++K Sbjct: 63 ANRALMGSNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRMDGEISYIDGSRIIVK 122 Query: 736 ---VNEDEMYPGE------------------------AGIDIYNLTKYTRSNQNTCINQM 768 V+ D E AG Y L KY RSNQ+TC+NQ Sbjct: 123 SLTVDADSNSSEESFLIREYDDLDLKTKQPSVWKQKYAGYIEYELQKYQRSNQDTCLNQR 182 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 P V G+ V G VLADG ST+ ELALG N+ V +MP Sbjct: 183 PLVYEGDQVVAGQVLADGSSTEGAELALGHNILVTYMP 220 >UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_STIHE Length = 1080 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 122/187 (65%), Gaps = 3/187 (1%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L Y RSNQ+T + P V GE V+ GD+L+D S+ GE ++GQN+ +A++PW GY Sbjct: 14 YSLQTYQRSNQDTSMLHRPVVKEGEWVQAGDLLSDCASSIGGEFSIGQNILIAYLPWEGY 73 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA-LSKLDESG 869 N+ED+IL+SER+V +D +T+IHI+ + G E+IT DI + + L+ LD++G Sbjct: 74 NYEDAILISERLVYDDLYTSIHIERYDISTEKNPYGIEKITKDIVLLKDTTELNHLDKNG 133 Query: 870 IVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEKAS-DVKDSSLRVPNGVSGT 927 I +GA + GDILVGK+TP + + ++ +L I G+K + ++DSSLRVP G+ Sbjct: 134 IAQLGAWLKEGDILVGKITPTESKKEVARYVQLYNDILGKKINYAIRDSSLRVPRGLEAK 193 Query: 928 VIDVQVF 934 VI V+ F Sbjct: 194 VIRVKTF 200 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 121/233 (51%), Gaps = 48/233 (20%) Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 FEKK +A + L + V +YLA KR++Q GDKMAGRHGNKG+IS+I P +D Sbjct: 405 FEKKRDA-------SNFLKSSCISSVHIYLAEKRKVQVGDKMAGRHGNKGIISQILPRQD 457 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MPY +GTP+D+ LNPLGVPSRMN+GQI E LG+A K +G+ Q + E Sbjct: 458 MPYLPDGTPIDMALNPLGVPSRMNVGQIYECLLGLAGKHLGE--------QYRIQPFDE- 508 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 F E VF A+ K Sbjct: 509 ------------------AFGPEASRSF-------------VFSKLYSAKTKTGQSWLFQ 537 Query: 1205 PTS-GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 PT+ G+++L+DGRTG F++ +T GY YM+KL HLVD+K+H + L T+ Sbjct: 538 PTNPGKLKLFDGRTGNCFDQAITTGYSYMIKLVHLVDEKIHCLTVDHEVLTTK 590 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/108 (49%), Positives = 78/108 (72%), Gaps = 1/108 (0%) Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 ++ ++ N L ++RS+G YSL+TQQPL G+++ GGQR GEMEVWA+EAYGAA+TL E Sbjct: 954 IFYVRRNGLSVWTGNSRSSGPYSLITQQPLKGRSKHGGQRLGEMEVWAIEAYGAAFTLLE 1013 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 +LT+KSDDV GR ++ + V + G P SF VL+ E+++L ++I Sbjct: 1014 LLTIKSDDVTGRLTIW-DYVLYKKPLYIGTPASFKVLICELQALCLDI 1060 >UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SSM5_METLZ Length = 637 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 157/314 (50%), Gaps = 45/314 (14%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 ++VKV R + GDK A RHG KGV I P E+MP+ G D+V+NP VPSRM Sbjct: 347 RLVKVRTRDLRIPEIGDKFASRHGQKGVCGLITPQENMPFTAAGIAPDLVINPHAVPSRM 406 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL--REFIQRAYDLGADVRQKVDLSTFS 1165 IG +LE G A G ++NA ++ +V K+ F Q ++ + V ST + Sbjct: 407 TIGHMLEMIGGKAGALEGSRVNATSFRKTQVEKIFDSSFAQNRLLNDKEIGKDVKSSTLT 466 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 E+V+R +L + G +G+ +YDG TG +F+ + Sbjct: 467 REQVLR------------------------HQLAEAG-FAHTGREVMYDGITGRRFQADI 501 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +G +Y KL H+V KMHARS G ++T+QP G+A+ GG RFGEME + +GAA Sbjct: 502 YIGVIYYQKLYHMVSTKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAM 561 Query: 1286 TLQEMLTVKSDDV--------------NGRTKMYKNIVDGNHQ--MEPGMPESFNVLLKE 1329 L+E L +SD V + + KM + + G E M +F +LL E Sbjct: 562 ALKERLLDESDAVKQYVCARCGMVAMYDAKQKMTRCLACGAETDIYEVEMSYAFKLLLDE 621 Query: 1330 IRSLGI--NIELED 1341 ++S+GI + LED Sbjct: 622 MKSMGIAPRLRLED 635 >UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=Archaea RepID=RPOB1_METTH Length = 603 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 143/303 (47%), Gaps = 69/303 (22%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 ++ K+ + +R+ + GDK A RHG KGV+ I EDMP+ E+G D+++NP +PSRM Sbjct: 345 RLAKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRM 404 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 ++GQ+LE G AA G +++ Sbjct: 405 SVGQVLEMLAGKAACMEGRRVD-------------------------------------- 426 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 G P F G E +IKE L+ T+G LY+G TGE+ E + + Sbjct: 427 -----------GTP-----FTGEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFI 470 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y KL+H+ DK++ARS G ++T+QP G+A+ GG RFGEME L A+GAA L Sbjct: 471 GVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALAL 530 Query: 1288 QEMLTVKSDDVNG---------------RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 +E L +SD R K Y I + + + +F +LL E++S Sbjct: 531 KERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICEDSESFPVEVSYAFKLLLDELKS 590 Query: 1333 LGI 1335 L I Sbjct: 591 LCI 593 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 19/147 (12%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 GQN VA M + GYN ED++++++ ++ + + R G E+ +IP Sbjct: 203 GQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEAAERRYPGGQED-RFEIPE 261 Query: 857 VG------EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI--FGE 908 G E+ LDE GI+ AEV+ GD+L+GK +P + L I FG Sbjct: 262 KGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPP---------RFLEEIDEFGT 312 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFT 935 A +++S+ V +G G ++D + T Sbjct: 313 VAERRRETSVTVRHGEKG-IVDAVLLT 338 >UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYC9_9BACE Length = 1237 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 123/257 (47%), Gaps = 40/257 (15%) Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 R++ GDKMAGRH NKG S I +MP NG +DI+LNP GVPSRMNIGQ E +LG Sbjct: 918 RLRTGDKMAGRHSNKGTASIIRKNSEMPCFMNGRQLDILLNPCGVPSRMNIGQNFEAYLG 977 Query: 1119 MAAKGI-----GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS------DE 1167 A + D N K ++ ++ +DL + K S + E Sbjct: 978 FIAYLLDVYVESDPFNGATK-----GDIKLLMRYVWDLANNENAKSVCSNYPMLPSTLHE 1032 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 + +R E +R P G L++ TG+ E PVT Sbjct: 1033 QAIRRHEAIRDWAGCFNP---------------------DGTAYLWNPATGKCLENPVTF 1071 Query: 1228 GYMYMLKLNHLVDDKMHARS---TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 G YMLKL H V+ K HAR+ YS +++QP G A+ GGQ+ GEME+ AL AYGA Sbjct: 1072 GVPYMLKLEHEVNHKFHARAGMLEEDYSQISKQPTEGSARGGGQKMGEMELCALAAYGAT 1131 Query: 1285 YTLQEMLTVKSDDVNGR 1301 L E SD+V R Sbjct: 1132 DFLYETCNSMSDNVLDR 1148 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 147/296 (49%), Gaps = 26/296 (8%) Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV---TDG---VVTDEIHYLSA 608 YGR+CP ETP G +G+ N+ ++ A+ + G L TPYR+V ++G ++ EI Y+ A Sbjct: 556 YGRICPYETPSGKKLGITNTKAIGARIKD-GILTTPYRRVLKNSNGEIESISQEITYMDA 614 Query: 609 IEEGNYVIAQANSNLDEEGH-FVEDLVTCRSKGESSLFSRDQVD-----YMDVSTQQVVS 662 EE + I S L ++G+ ++ V R ++ + + VD Y++ +Q +S Sbjct: 615 QEEAQFRIGDLLS-LKKDGYRYLNTKVMARVPAPNNQVTVESVDAYTLDYVNAYCEQHLS 673 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV-AKRG 721 A+LIPF DDA R NM +Q++ + P V T M R S + AK+ Sbjct: 674 PTAALIPFAGSDDAVRVTYATNMLKQSILVQGSQIPRVFTSMYRRCFNHSNTYVIRAKKD 733 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G V+ + ++ + + + I+ + + + +NQ+ V G+ ++GD Sbjct: 734 GWVEQIPMGKLQLTYD-------DGTIEDIEICETSVTNQSVNFLNFH-VKEGDHFKKGD 785 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 VL D G + G N+ A++ +GYN+ED++ +SE ++F +I + + Sbjct: 786 VLVDSAIAREGIYSPGVNLFAAYLA-DGYNYEDAVELSEYAA--NQFISISTETIT 838 >UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=Archaea RepID=RPOB_SULAC Length = 1126 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 125/251 (49%), Gaps = 57/251 (22%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K+VKV + R + GDK A RHG KGV+ + DMPY G DI+LNP +PSRM Sbjct: 858 KLVKVRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRM 917 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 IGQI+E IG K A+ Sbjct: 918 TIGQIME--------AIGGKYAAL------------------------------------ 933 Query: 1168 EVMRLAENLRKGMPI-ATPVFDGAKEAEI-KELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 G P+ ATP + K E+ KE+LKLG LP S ++ +YDGRTG++ + + Sbjct: 934 ----------SGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEV-VYDGRTGQKLKSRI 982 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G +Y KL+H+V DKMHAR+ G ++T+QP G+A+ GG RFGEME L +G A Sbjct: 983 LFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAM 1042 Query: 1286 TLQEMLTVKSD 1296 +++ L SD Sbjct: 1043 LIKDRLLDNSD 1053 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 136/539 (25%), Positives = 230/539 (42%), Gaps = 95/539 (17%) Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG-------LVRVERAVKERLSL 481 + K++++ G+ E DD DH N+R+R G++ + FRV LV K R Sbjct: 317 VNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRR 376 Query: 482 GDLDTLMPQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 L L+ D+I + A + G + +SQ +D+ N LS ++H RR+ + L Sbjct: 377 LSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVVS----SLA 432 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD--G 597 R + FE RD+H T +GR+CP ETPEGPN GL+ +L++ AQ + G E+ +V G Sbjct: 433 RGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVS-VGINESVVERVAYELG 491 Query: 598 VVTDEIHYLSAIEEGN------------YVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 VV+ E + I E N Y+ + ++ + + R +G+ S Sbjct: 492 VVSVE-DVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGKLS-- 548 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 D+V+ ++T + V + DA R R+ + + PLV T E Sbjct: 549 --DEVNVAYIATDYLNEVHINC-------DAGRV-------RRPLIIVNNGTPLVDT--E 590 Query: 706 RAVAVDSGVTAVAK--RGGVVQYVDA---SRIVIKVNEDEMYPGEAGIDIY--------- 751 + +G + G ++++DA + +N ++ P ++I+ Sbjct: 591 DIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSAILGIIA 650 Query: 752 NLTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADG-------PSTDLGELAL----- 796 ++ Y NQ NT + M SLG + D P L + + Sbjct: 651 SIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRMLGVIG 710 Query: 797 ------GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 850 G N +A M + GYN EDSI++++ ++ + + + L G +E Sbjct: 711 YNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFR-LYSTEEVKYPGGQED 769 Query: 851 TADIPNVGEAALSK------LDESGIVYIGAEVTGGDILVGKVTPKGETQ----LTPEE 899 P G L+++G+V EV GGD+L+GKV+P Q L+PE+ Sbjct: 770 KIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQ 828 >UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax=root RepID=RPOB1_METJA Length = 636 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 54/249 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 ++VKV + R + GDK A RHG KGV+ P ED+P+ E+G DI++NP +PSRM Sbjct: 350 RLVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRM 409 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +GQ+LE +G K+ A+ Sbjct: 410 TVGQLLEM--------LGGKVGAL------------------------------------ 425 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 +G I +F G KE ++++ L+ G+ +YDG+TG++FE + + Sbjct: 426 ----------EGRRIDGTIFSGEKEWDLRKALEALGFKHHGKEVMYDGKTGKKFEVEIYI 475 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y KL+HLV K+HARS G ++T+QP G+A+ GG RFGEME L +GAA L Sbjct: 476 GIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLL 535 Query: 1288 QEMLTVKSD 1296 +E L +SD Sbjct: 536 KERLMDESD 544 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 9/100 (9%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRDTKLGPEEITADIP 855 GQN VA M + GYN ED+I+ ++ + + + AC R G + +IP Sbjct: 208 GQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYP--GGQMDRFEIP 265 Query: 856 NVG------EAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + G E L+E GIV + + V GGD++VGK +P Sbjct: 266 DKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSP 305 >UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=Euryarchaeota RepID=RPOB1_METVS Length = 611 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 118/234 (50%), Gaps = 54/234 (23%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KGVI + P ED+P+ E+G D+++NP +PSRM IGQ+LE Sbjct: 361 GDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEM------- 413 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 IG K+ ++ + R +VD + FS Sbjct: 414 -IGGKVGSL----------------------ECR-RVDGTIFS----------------- 432 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 G E ++ L+ SG+ +YDG+TG + E + VG Y KL+HLV K Sbjct: 433 ------GEGEWALRHALENYGFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGK 486 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 +HARS G ++T+QP G+A+ GG RFGEME L A+GAA L+E L +SD Sbjct: 487 IHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLKERLLDESD 540 >UniRef50_Q1KS34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chlamydophila pneumoniae RepID=Q1KS34_CHLPN Length = 229 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 969 AGLFSRIRAVLVAGGV--EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 A + R ++V G+ + E ++++ ++ ++L + + E L+ L Y+ E Sbjct: 35 AIIHRRTAEIVVHEGLLFDQETIERIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLE 94 Query: 1027 KKLEAKRRKITQGD-DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + + I +GD DL GV++ VKVY+A KR++Q GDKMAGRHGNKGV+SKI P DM Sbjct: 95 INYKTEVEHIREGDADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADM 154 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 PY NG V ++LNPLGVPSRMN+GQ+LETHLG AAK G Sbjct: 155 PYLSNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAG 194 >UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeota RepID=A9A459_NITMS Length = 1115 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 70/289 (24%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KGV+ + ED+PY +G D+++NP PSRM +G ++E+ G +A Sbjct: 871 GDKFASRHGQKGVLGILAKAEDLPYTASGMSPDVLINPHAFPSRMTVGMMMESICGKSAA 930 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 G + +D A V +K+D Sbjct: 931 LRGKR---------------------FDGSAFVGEKMD---------------------- 947 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 E++E++ SG+ +YDGRTG+ F V +G +Y KL+H+V DK Sbjct: 948 -----------EVREVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADK 996 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------ 1296 +HAR+ G ++T+QP G+A+ GG RFGEME L AYGA+ L++ L +SD Sbjct: 997 IHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFV 1056 Query: 1297 ----------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 DV R + + D + +F +LL+E++SL + Sbjct: 1057 CERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNV 1105 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 134/515 (26%), Positives = 224/515 (43%), Gaps = 80/515 (15%) Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-------SLGD 483 KL++++ DD DH GN+ I+ G+M + FR + R +K +L + Sbjct: 321 KLLELKLDWIRPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGINA 380 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQL--SQFMDQNNPLSEITHKRRISALGPGGLTRE 541 + + +I K +A +G ++ +Q +D+ N LS I+H RRI + L+R Sbjct: 381 VAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQS----PLSRT 436 Query: 542 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV-T 600 + FE RD+H TH+GR+CP ETPEG N GL+ +L++ + + P ++ + + Sbjct: 437 QPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIIS----VNVPSEEIVEKLYDL 492 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGH--FVED-LVTCRSKGESSLFS-RDQVDYMDVS 656 +H+ A E+ L ++G FV+ L+ GE S RD + Sbjct: 493 GTVHFFDAKED-----------LKKDGTRIFVDGRLIGYYKDGEQLAESLRDLRRNSKIH 541 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP--TLRADKPLVGTGMERAVAVDSGV 714 VS S I R + N R P ++ +KPL+ + ++ Sbjct: 542 PHVGVSFHKSEI----EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISKKLIS 597 Query: 715 TAVAKRGGVVQYVDAS---RIVIKVNED--------EMYPGE---AGIDIYNLTKYTRSN 760 R GV++ +DA+ + ++E E++P AG I ++ +S Sbjct: 598 WTDLLRMGVLEMIDANEEENCYVTLDEKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSP 657 Query: 761 QNTCINQMPCVSLG--EPV--------ERGDVLADGPSTDLGELAL--------GQNMRV 802 +NT + M SLG P+ + + P + + L GQN V Sbjct: 658 RNTYESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCVV 717 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV----- 857 A +P++GYN ED+I++S+ V T + ++ G + +IPN Sbjct: 718 AVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRD-AFEIPNAEDNIR 776 Query: 858 ---GEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 GE A L+E G+V A V GGDIL+GK +P Sbjct: 777 GYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSP 811 >UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeota RepID=B5IGJ5_9EURY Length = 1201 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 120/249 (48%), Gaps = 54/249 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 ++VKV + +R + GDK A RHG KGV+ I P EDMP+ E+G D+++NP +PSRM Sbjct: 940 RLVKVKVRDQRIPELGDKFASRHGQKGVVGAIIPQEDMPFTESGIIPDLIINPHAIPSRM 999 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +G ILE IG K+ ++ Sbjct: 1000 TVGHILEM--------IGGKVGSL------------------------------------ 1015 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 +G + VF G E ++E L +G+ +YDG TG + E + V Sbjct: 1016 ----------EGRFVDGTVFSGEPEKALREALVKNGFKYNGKEIMYDGITGRKIEAEIFV 1065 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y KL+H+V K HARS G ++T+QP G+++ GG RFGEME L +GAA + Sbjct: 1066 GVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAMVI 1125 Query: 1288 QEMLTVKSD 1296 ++ L SD Sbjct: 1126 KDRLLDNSD 1134 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 18/203 (8%) Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG------- 482 ++++++ G + DD DHL N+R++ G++ E FR+ + + +K +L Sbjct: 371 RRVLELHLGLRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLKYQLERTYNRKKGI 430 Query: 483 DLDTLMPQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 + + QD++ K + A + G + +SQ +D+ + +S ++H RR+ + P LTR Sbjct: 431 RIRVSIRQDVLTQKIMHAMSTGNWVGGRTGVSQLLDRTSHMSTLSHLRRV--ISP--LTR 486 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 + FE RD+HPT +GR+CP ETPEG N GL+ + ++ +E G+ E K+ G+ Sbjct: 487 SQPHFEARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSE-GYPEEDVLKILKGLGV 545 Query: 601 DEIHYLSAIEEGNYVIAQANSNL 623 +E Y E G N NL Sbjct: 546 EERQY----ETGELARVYLNGNL 564 Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 GQN VA + ++GYN +D+I++++ V+ + + R G E+ +IP+ Sbjct: 799 GQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYPGGQED-KFEIPS 857 Query: 857 ------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + E LDE G++ V GGD+L+GK +P Sbjct: 858 PDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSP 896 >UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4N2L4_THEPA Length = 1235 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 131/268 (48%), Gaps = 44/268 (16%) Query: 1033 RRKITQGDDLAPGVLK----IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 + +IT GD ++ LK I+K L V R GDK A RHG KG++S + P EDMP+ Sbjct: 933 KSEITVGDKISCPGLKHDRAIIK--LRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFL 990 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 ENG D++ NP G+PSRM IG+++E G+ K+ ++ + Q+ + + Sbjct: 991 ENGIVPDVIFNPHGLPSRMTIGKLIE--------GMAGKVASIYGKPQDSTCFQAYYSEN 1042 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 + G + ++VD+ + K L+K G G Sbjct: 1043 PENGDEEMEEVDVVDYFG-----------------------------KSLIKSG-YEYYG 1072 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 +Y G G + + + VG +Y +L H+V DK RSTG +T+QP+ G+ GG Sbjct: 1073 TESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQPVKGRKNLGGI 1132 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 RFGEME AL A+G A LQ+ L SD Sbjct: 1133 RFGEMERDALIAHGTANLLQDRLLHCSD 1160 >UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 Tax=Coelomata RepID=RPA2_MOUSE Length = 1135 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 120/257 (46%), Gaps = 50/257 (19%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D+ G K + + + + R GDK A RHG KG++S++ P EDMP+ E+G DI+ N Sbjct: 857 NDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFN 916 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ MA K A L A Sbjct: 917 PHGFPSRMTIGMLIES---MAGKS---------------AALHGLCHDATPF-------- 950 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 FS+E + A E E+LK G RLY G +G Sbjct: 951 ---IFSEE--------------------NSALEY-FGEMLKAAGYNFYGTERLYSGISGM 986 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + E + +G +Y +L H+V DK R+TG+ VT QPLGG+ GG RFGEME AL Sbjct: 987 ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALL 1046 Query: 1280 AYGAAYTLQEMLTVKSD 1296 A+G ++ L + L SD Sbjct: 1047 AHGTSFLLHDRLFNCSD 1063 >UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 Tax=Amniota RepID=RPA2_HUMAN Length = 1135 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 119/257 (46%), Gaps = 50/257 (19%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D G K V + + V R GDK A RHG KG++S++ P EDMP+ E+G DI+ N Sbjct: 857 NDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFN 916 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ MA K A L A Sbjct: 917 PHGFPSRMTIGMLIES---MAGKS---------------AALHGLCHDATPF-------- 950 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 FS+E + A E E+LK G RLY G +G Sbjct: 951 ---IFSEE--------------------NSALEY-FGEMLKAAGYNFYGTERLYSGISGL 986 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + E + +G +Y +L H+V DK R+TG+ VT QP+GG+ GG RFGEME AL Sbjct: 987 ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 1046 Query: 1280 AYGAAYTLQEMLTVKSD 1296 A+G ++ L + L SD Sbjct: 1047 AHGTSFLLHDRLFNCSD 1063 >UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi RepID=Q2TAM4_HUMAN Length = 952 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 119/257 (46%), Gaps = 50/257 (19%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D G K V + + V R GDK A RHG KG++S++ P EDMP+ E+G DI+ N Sbjct: 674 NDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFN 733 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ MA K A L A Sbjct: 734 PHGFPSRMTIGMLIES---MAGKS---------------AALHGLCHDATPF-------- 767 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 FS+E + A E E+LK G RLY G +G Sbjct: 768 ---IFSEE--------------------NSALEY-FGEMLKAAGYNFYGTERLYSGISGL 803 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + E + +G +Y +L H+V DK R+TG+ VT QP+GG+ GG RFGEME AL Sbjct: 804 ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863 Query: 1280 AYGAAYTLQEMLTVKSD 1296 A+G ++ L + L SD Sbjct: 864 AHGTSFLLHDRLFNCSD 880 >UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax=Plasmodium RepID=RPOB_PLAFA Length = 1024 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/385 (24%), Positives = 176/385 (45%), Gaps = 25/385 (6%) Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 L Q+ DQ N LSEI K +I+ + G ++ ++R++ G + I T EG G Sbjct: 323 LVQYSDQVNNLSEINQKFKINMITTGLNSKFILNNDLRELPRNILGYISLINTNEGLTCG 382 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY--------LSAIEEGNYVIAQANSN 622 L+N Y TN FL Y V + I Y L+ + Y I+ N Sbjct: 383 LVN----YLTTNI--FLNLKYLFV---IYYKHIFYNRYNFKLLLNIFNKNFYNISFNNIY 433 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 L + +F + + +K + + Q + + + ++S +LIPF+ ++D+ R LM Sbjct: 434 LKKNINFNKTTILTINKNTFKICNITQ-NIIYIPFNYLLSFIENLIPFIHYNDSIRNLMS 492 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 M Q VP + + + T + ++ + G+V YV +I+I+ +++ Sbjct: 493 IKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISYQEGIVIYVSCIKIIIR----DLF 548 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + IY L Y + NQN + P V +GE V G +LA + E +LG N+ V Sbjct: 549 NRQI---IYYLNNYKKINQNILLIYKPIVWVGEKVNIGQILAINSNLLNSEYSLGNNLLV 605 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 + + GY +ED+I++S +++ + +T++H+ PE + ++ + + Sbjct: 606 GYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEISLNIINNIPEICSINLSKMYYKNI 665 Query: 863 SKLDESGIVYIGAEVTGGDILVGKV 887 LD+ GI+ G + +IL+ K+ Sbjct: 666 KHLDKYGIIKEGTYILANNILISKL 690 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 57/123 (46%), Positives = 81/123 (65%), Gaps = 2/123 (1%) Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TG + + +Y KL H++ DK R G YS +TQQP+ G + GGQRFGEMEVW Sbjct: 882 TGNMINNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVW 941 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME-PGMPESFNVLLKEIRSLGI 1335 ALEA+GA+Y +E T KSDD+ R K+ KN + N++++ + E+F ++LKE++SL I Sbjct: 942 ALEAFGASYLFKEFFTYKSDDIKSR-KILKNYLFNNYKIKNTFISETFKLILKELQSLAI 1000 Query: 1336 NIE 1338 NIE Sbjct: 1001 NIE 1003 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 49/71 (69%) Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 ++Y+ +++ +Q GDK+ RHG+KG+IS I+ I D+PY N DI ++ + +PSR+NIG Sbjct: 756 RIYIGIQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIG 815 Query: 1111 QILETHLGMAA 1121 QI E G+ + Sbjct: 816 QIFEGIYGLNS 826 >UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SSB7_ENCCU Length = 1062 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 146/319 (45%), Gaps = 62/319 (19%) Query: 1044 PGVLKIVKVY------------LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 PG++ IV+V+ + + R GDK + RHG KGV S P DMP+ E+G Sbjct: 783 PGIVDIVRVFENDMGERCATFTIRIVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFTESG 842 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 DI++NP PSRM IG ++E+ I K+ + +Q+ ++ + Sbjct: 843 CVPDIIINPHAFPSRMTIGMLIES--------IAGKVGCLSGNEQDGTVFKKSFLLEQEE 894 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 G DE+V R KE EL + G G Sbjct: 895 G------------DDEKVRR-------------------KEYLCSELRRHG-FNYYGNEP 922 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 +Y G G +F + VG +Y +L H+V DK R+ G+ T+QP+GG+ + GG RFG Sbjct: 923 MYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGIRFG 982 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDV------NGRTKMYKN---IVDGNHQMEP-GMPE 1321 EME AL ++GA+Y LQ+ L SD R+ ++ N + G+ ++ MP Sbjct: 983 EMERDALISHGASYLLQDRLLKSSDSTVFEYCGTCRSILFTNNGDCICGSSDLKAVEMPY 1042 Query: 1322 SFNVLLKEIRSLGINIELE 1340 F L E+ ++ I ++++ Sbjct: 1043 VFKYLCCELLAMNIKVQID 1061 >UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis RepID=A9VCU6_MONBE Length = 1136 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 101/377 (26%), Positives = 159/377 (42%), Gaps = 83/377 (22%) Query: 992 LPRDRWLELGL--TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL-K 1048 LP+DR L + D + ++ ++ D L + R +I +G+ P ++ + Sbjct: 809 LPKDRSANLKMEKLDADGLPRVGAHIKEGDALYSYIDGSTNESRTEIYRGE---PAIIDR 865 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 V + L++ R GDK A RHG KG++S++ P DMP+ E+G DI+ NP G PSRM Sbjct: 866 KVTIRLSINRNPIIGDKFASRHGQKGILSQLWPTADMPFSESGIIPDILFNPHGFPSRMT 925 Query: 1109 IGQILETHLGMAA--KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 IG ++E+ G +A G+ + + E RA D Sbjct: 926 IGMLIESMAGKSAALHGVAHDATPFMFNENE---------RAVDY--------------- 961 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 E L+ G R+Y G TGE+FE + Sbjct: 962 ----------------------------FGEQLRTAGYNYHGHERMYSGITGEEFEVDIF 993 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G ++ +L H+V DK R+ G + +T+QP+ G+ + GG RFGEME AL +G A+ Sbjct: 994 IGNVFYQRLRHMVSDKFQVRTQGPVNSLTRQPVKGRKKNGGIRFGEMERDALLGHGTAFL 1053 Query: 1287 LQEMLTVKSD----DVNG-------------------RTKMYKNIVDGNHQMEPGMPESF 1323 LQ+ L SD DV R + DG + +P F Sbjct: 1054 LQDRLFNCSDRSEVDVCRKCGSLLSPYSSEKTAANRIRVLRCRGCSDGGEVVRVNLPYVF 1113 Query: 1324 NVLLKEIRSLGINIELE 1340 L E+ ++ I + L+ Sbjct: 1114 RYLTAELSAMNIRLSLD 1130 >UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae RepID=Q6E6F3_ANTLO Length = 1014 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/296 (32%), Positives = 135/296 (45%), Gaps = 63/296 (21%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 +VK L R+ + GDK + RHG KGVI + P D+P+ E+G DI++NP G PSRM Sbjct: 765 MVKTCLRQVRQPEVGDKFSSRHGQKGVIGLVVPETDLPFSEDGQVPDIIMNPHGFPSRMT 824 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 +G+I+E G AA G +Q + RE I DLS Sbjct: 825 VGKIIELISGKAAVFTG--------RQSDATVFREDITE------------DLSHI---- 860 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 L+K G G+ +G TG+ +E V G Sbjct: 861 -----------------------------LIKHG-YSYCGKDTFTNGITGDVYEGYVFFG 890 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 +Y +L H+V DKMHARS G +++T+QP GK++ GG R GEME L YGA+ L Sbjct: 891 PVYYQRLKHMVADKMHARSRGPRAMLTRQPTEGKSREGGLRLGEMERDCLIGYGASAILC 950 Query: 1289 EMLTVKSDDVNGRTK------MYKNIVDGNHQMEP---GMPESFNVLLKEIRSLGI 1335 E L + SD +YKN+ + +P MP + +L +E+ S+ I Sbjct: 951 ERLMISSDVFRAYICHRCGIIVYKNMCTLCKRGDPVPVDMPYACKLLFQELMSMNI 1006 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 17/155 (10%) Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--------LGDLDTLMPQDM- 492 +DDID LGN+R G + F +R +K+ + DLD L ++ Sbjct: 260 MDDIDFLGNKRFELAGNLLSILFEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQ 319 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV----- 547 +N S G+ + +F + ++++ + A+ G + + ++ FE Sbjct: 320 VNLISNSFVRAISTGNWTVRRFRMERAGVTQVLSRLSYIAM-IGSMAKIQSQFEKTRKIS 378 Query: 548 --RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 R +H + +G +CP +TPEG + GL+ +L++ A+ Sbjct: 379 GPRSLHTSSWGMLCPADTPEGESCGLVKNLAILAE 413 >UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=B7XI25_ENTBH Length = 1107 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 131/266 (49%), Gaps = 38/266 (14%) Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 +++GDD KI+K+ + R ++ GDK + RHG KGV+ I P D+P++E G D Sbjct: 827 LSKGDDD-----KILKIKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEYGVCPD 881 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++NP G PSRM +G+ILE IG K+ + + + + AD Sbjct: 882 IIMNPHGFPSRMTVGKILEL--------IGSKVTCLTGEYTDATPFE-------NNTADN 926 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE-IKELLKLGDLPTSGQIRLYD 1214 K +T + E P+ ++ E + ++L SG+ Sbjct: 927 DLKTIFNTTNQE-----------------PLHKEHRQTELLCQILIDHGYSYSGKDVFTS 969 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G TGEQFE + G ++ +L H+V DK+H RS G +++T+QP G+++ GG R GEME Sbjct: 970 GITGEQFEAYIFFGPIFYQRLKHMVADKIHCRSRGPRAVLTRQPTEGRSKDGGLRLGEME 1029 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNG 1300 L YGA L E L SD+ + Sbjct: 1030 RDCLIGYGANSLLNERLMHCSDEFDA 1055 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 23/172 (13%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE-------NQFRVGLVR-VERAVKERL 479 +++KLI + + DD D+LGN+R G++ +F L + +++ + +R+ Sbjct: 317 MIRKLILAKQNLLKPDDKDYLGNKRFELAGQLLSILFEDTFKKFNFELKKSIDKILSKRI 376 Query: 480 SLGDLDTLMPQDMINAK---PISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGP 535 + D L ++ +S A+ G+ L +F M+++ +T I+ALG Sbjct: 377 RTNEFDALTFFNLQTGSITTTLSRAISS--GNWNLKRFKMERSGVTHVLTRYSYITALGM 434 Query: 536 GGLTRERAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 +T+ + FE R +HP+ +G CP +TPEG + GL+ +L++ + Sbjct: 435 --MTKINSHFEKTRKVSGPRSLHPSSWGMFCPADTPEGESCGLVKNLALLTE 484 >UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepID=B3RKF5_TRIAD Length = 780 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 123/260 (47%), Gaps = 54/260 (20%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G D L+ + V ++R GDK + RHG KGV S++ PIE+MP+ E+G DI+ Sbjct: 498 GSDSGRKPLQRICVKFRIERNPIIGDKFSSRHGQKGVCSQLWPIENMPFTESGMTPDILF 557 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR--AYDLGADVR 1156 NP G PSRM IG ++E+ MA K +A L A +F ++ A D Sbjct: 558 NPHGFPSRMTIGMMIES---MAGK------SASLHGLCHDATPFQFSEKVSAVDYFGKYL 608 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 +K + F E R+YDG Sbjct: 609 EKAGYNYFGTE-------------------------------------------RMYDGM 625 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 +GE+FE + +G +Y +L H++ DK R+TG +T+QP+ G+ + GG RFGEME Sbjct: 626 SGEEFEANIFIGTVYYQRLRHMISDKFQVRTTGPIDSLTRQPVQGRKRAGGVRFGEMERD 685 Query: 1277 ALEAYGAAYTLQEMLTVKSD 1296 AL ++G ++ LQ+ L SD Sbjct: 686 ALISHGTSFLLQDRLLNCSD 705 >UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=Q8I5X9_PLAF7 Length = 1450 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 116/253 (45%), Gaps = 54/253 (21%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 LK+ K+ + R + GDK + RHG KGV+ + EDMP+ E+G D+++NP G PSR Sbjct: 1197 LKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSR 1256 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M +G++LE AA G+ Y G+ Sbjct: 1257 MTVGKLLELVASKAAVMDGE----------------------YKYGS------------- 1281 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 +F G EI E+L S + LY G TGE E + Sbjct: 1282 -------------------IFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIF 1322 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G +Y KL H+V DK+HAR+ G L+T+QP G+++ GG R GEME L AYG + Sbjct: 1323 MGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNL 1382 Query: 1287 LQEMLTVKSDDVN 1299 L E L + SD N Sbjct: 1383 LLERLMLSSDVCN 1395 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 91/186 (48%), Gaps = 38/186 (20%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERLS 480 I ++++++D N K E+DD D+ GN+R+ G++ E+ ++ +++ + + LS Sbjct: 563 ICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLS 622 Query: 481 ---------------------LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 D+ +P+D+I + + A+ G+ + +F + + Sbjct: 623 KYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDII-TRGMQTAIST--GNWNIKRFKMEKS 679 Query: 520 PLSEITHKRRISALGP-GGLTRERAGFEV-------RDVHPTHYGRVCPIETPEGPNIGL 571 +S++ R+S + G +TR + FE R + P+ +G +CP +TPEG + GL Sbjct: 680 GVSQVL--SRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGL 737 Query: 572 INSLSV 577 + +L++ Sbjct: 738 VKNLAL 743 >UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota RepID=C1E1U0_9CHLO Length = 1178 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 136/306 (44%), Gaps = 71/306 (23%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L+ VK+ + R Q GDK + RHG KG I EDMP+ G DI++NP +PSR Sbjct: 921 LRFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSR 980 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IGQ++E +G K+ AM+ ++ + Sbjct: 981 MTIGQLVECLMG--------KVAAMMGKEGD----------------------------- 1003 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 ATP F I ++L + G +Y+G TG + E + Sbjct: 1004 ----------------ATP-FTPVTVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIF 1046 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G Y +L H+VDDK+H+R G ++T+QP+ G+++ GG RFGEME + ++GAA Sbjct: 1047 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAF 1106 Query: 1287 LQEMLTVKSDDV-----------------NGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 L+E L +SD N + KN + ++ MP + +L +E Sbjct: 1107 LKERLMDQSDAYRIHVCETCGLIAVANLKNQTFECCKNPSERTKVVQVMMPYACKLLFQE 1166 Query: 1330 IRSLGI 1335 + S+ + Sbjct: 1167 LMSMAV 1172 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 30/208 (14%) Query: 398 SAVG-----RMKFNRSLLREEI-------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 SAVG R+++ R +L++E+ EG + ++ +L+ G+ + DD Sbjct: 330 SAVGVTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFLGYIVNRLLLCALGRKKEDDR 389 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGDLDTLMPQDMINAKPISAAVK 503 DH GN+R+ G + FR +V + V+ + + + + AK I++ +K Sbjct: 390 DHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRCIDSGKDIQLTLAVKAKTITSGLK 449 Query: 504 EFFGSSQ------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVH 551 + +SQ +++ + S ++H RR+++ P G RE + R +H Sbjct: 450 YSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNS--PIG--REGKLAKPRQLH 505 Query: 552 PTHYGRVCPIETPEGPNIGLINSLSVYA 579 +H+G VCP ETPEG +GL+ +LS+ Sbjct: 506 NSHWGMVCPAETPEGQAVGLVKNLSLMC 533 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 34/160 (21%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI---------------QELA 837 EL G N+ V M + GYN EDS+++++ + F +I +EL Sbjct: 778 ELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEELE 837 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 SRDT LG T D KLD+ G++ G V+G DI++GK +P E + Sbjct: 838 RPSRDTTLGMRHGTYD----------KLDDDGLICPGTRVSGEDIIIGKTSPLPEDDPSA 887 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 K +D S + N +G + V + T D Sbjct: 888 VSKRFTK---------RDCSTGMKNSETGIIDQVLLTTND 918 >UniRef50_P41187 DNA-directed RNA polymerase subunit beta (Fragment) n=66 Tax=Alphaproteobacteria RepID=RPOB_LIBAF Length = 146 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 93/129 (72%), Gaps = 6/129 (4%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD--PEGQ--YGLEAAFRSVFPIQSYSGNSE 67 RK FGK P+++D+P L+ +Q S+ +F+ + PE + GL+AAF+SVFPI+++SG + Sbjct: 18 RKFFGKNPEIIDIPDLIEVQKASYDQFLMMNTAPEDRPNEGLQAAFKSVFPIKAFSGAAM 77 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TVKDIKEQEVYMG 125 L++VSY P FDV +C R +TY+ PL++ LRL++++ + G ++KDIKEQ +YMG Sbjct: 78 LEFVSYEFDPPKFDVDDCLRRDLTYAVPLKIILRLIVFDVDEFTGAKSIKDIKEQSIYMG 137 Query: 126 EIPLMTDNG 134 ++PLMT +G Sbjct: 138 DVPLMTKDG 146 >UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L740_KORCO Length = 1121 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 119/249 (47%), Gaps = 54/249 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K+V+V + R + GDK A RHG KGV+ I EDMP+ G DIVL+P +PSRM Sbjct: 862 KLVRVNVRETRPPELGDKFATRHGQKGVLGMIYRHEDMPFTAQGIIPDIVLDPHTIPSRM 921 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 IGQ+ E G +GA + VD + F E Sbjct: 922 TIGQLYEIIAG-------------------------------KVGALEGRFVDGTPFMSE 950 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 V L E L+KLG SG+ +YDGRTG + PV + Sbjct: 951 PVEDLME----------------------ALVKLG-FEYSGEEIMYDGRTGRMIKAPVFI 987 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y +L H+V DK+HAR+ G L+T+QP+ G+A+ GG R GEME L ++GAA + Sbjct: 988 GISYYQRLKHMVRDKIHARARGQMQLLTRQPVEGRARGGGLRLGEMEGEVLISHGAASVI 1047 Query: 1288 QEMLTVKSD 1296 ++ +SD Sbjct: 1048 RDRYIDQSD 1056 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 106/196 (54%), Gaps = 22/196 (11%) Query: 402 RMKFNRSLLREE-IEGSGILSKDDIID------VMKKLIDIRNGKGEVDDIDHLGNRRIR 454 R+++ + LR + G+ +D+I+ +++KL+ + GK E DD DH N+R+R Sbjct: 294 RIRYAKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKLLKVVRGKLEPDDKDHFSNKRLR 353 Query: 455 SVGEMAENQFRVGLVRVERAVKER----LSLG--DLDT---LMPQDMINAKPISAAVKEF 505 G + + FR ++ R +KE+ LS G DLD + Q ++ + I A Sbjct: 354 LSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYDLDIRRIIQSQKLVTQRIIRAVATGA 413 Query: 506 F--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 + G +SQ +++ N ++ + H RR+++ P GL EVR H T GR+CP+ET Sbjct: 414 WPGGDLGVSQNLERTNYIATLHHLRRVNSPLPAGLPLH----EVRQTHGTSIGRLCPLET 469 Query: 564 PEGPNIGLINSLSVYA 579 PEG N+GL+ SL+++ Sbjct: 470 PEGTNVGLVRSLAIFC 485 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 11/152 (7%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL-------ACVSRDTKLGPEE 849 GQN+ VA +P +GYN +D++++S+ + + + A + D P Sbjct: 715 GQNLVVALLPMDGYNMDDALVMSKGAIDRGAARAVFFRTYETEARRHAIIEGDKFENPVA 774 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 + E KL E GIV V GGD+L+GK +P + +PE + + + Sbjct: 775 LKKVSGKKEEQYYQKLGEDGIVDPETYVEGGDVLIGKTSP---PRFSPELTVGSG-YPQY 830 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 + +D+S+ + G V DV + T+ G EK Sbjct: 831 TFERRDTSISMRAWERGVVTDVLLATKTGGEK 862 >UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax=Theileria parva RepID=RPOB_THEPA Length = 1005 Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 131/284 (46%), Gaps = 53/284 (18%) Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 RI GDK+ GRHGNKGV+SKI D+PY G + +P+G +R+N+GQ LE G Sbjct: 763 RINIGDKLCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGALARINLGQFLEGSCG 822 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 +I A + +++ ++ +V ++ FS E+ +R Sbjct: 823 YFGLNFNCRIKAPINLYNYHLYSNMYLKNIFN-SLNVYNNSYIN-FSIEKYLR------- 873 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 D +TG Q + + Y LKL H Sbjct: 874 -----------------------------------DFKTGYQLKNFNLMLMPYFLKLMHT 898 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 K R+ G YS +TQQP+ GK G Q+FGEMEVWALE++G+AYT++E+ +K++ Sbjct: 899 SKSKFQYRTVGKYSSLTQQPVKGKRVNGSQKFGEMEVWALESHGSAYTIRELGYIKTN-- 956 Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K +K H+ G E+F VL E++++ INI D Sbjct: 957 ---VKYFKKF---EHKGYKG-SETFKVLTLELKNVLININRVDN 993 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 94/432 (21%), Positives = 189/432 (43%), Gaps = 62/432 (14%) Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF--RVGLVRVERAVKERLSL 481 DI+ ++ K +++ K + ++L N+ SV + QF V + +E+ Sbjct: 233 DILSIVNKFLNLNLKKKFIQSSNNLINKSTNSVLKTIFRQFTKSVTIFDIEKYC------ 286 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541 D L+ + I KE + + + DQ N LS +T+K +I+ G + + Sbjct: 287 ---DKLLYKKKIFRSFNIVLFKEHLLVNPVIHYTDQLNVLSYLTNKFKINIFGYSNSSND 343 Query: 542 R--AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS-----------VYAQTNEYGFLE 588 + +R + + G + + TP+G GLI+ L+ + NEY Sbjct: 344 KFKVSTNLRKIQSDYIGFINIVNTPDGDTCGLISKLANNTILDKFKLKLINCNNEY---- 399 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL--FS 646 + T +T + L + N++ N+ + F + E L F Sbjct: 400 --FENFTKIDITSKN--LYNMTSNNFI------NIKKNSTFKVKQIEVFKNNEFKLINFD 449 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 +++ + +++ +S+ +IPFL ++D R LMG+ M QA+P + + P V T Sbjct: 450 KNKTN-KNLNVFNTLSITELIIPFLFNNDPCRGLMGSKMHTQALPLIYNEHPYVMTKYNH 508 Query: 707 --AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE-----MYPGEAGIDIYNLTKYTRS 759 + + +T++ + G++ V+ +I++ +++ +YP +N+ Y Sbjct: 509 MNGLLFNKCITSLCE--GIIVSVNNYKIIVMDDKNRYLHYYLYP-------FNVLDY--- 556 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 N+ ++ P V +GE + G +LA E LG N + + +NGY ED+I+++ Sbjct: 557 --NSFVSYKPIVWVGEKINIGKILALPSDLKHSEFTLGVNNLLNYSFYNGYEHEDAIVIN 614 Query: 820 ERVVQEDRFTTI 831 + ++ ED T+I Sbjct: 615 KNLIIEDILTSI 626 >UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QD43_LEIMA Length = 1132 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 134/303 (44%), Gaps = 70/303 (23%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 +KV R +PGDK + RHG KGV+ I DMP++E G D+++NP G PSRM + Sbjct: 881 IKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTV 940 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 G++L E V Sbjct: 941 GKLL-----------------------------------------------------ELV 947 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 A LR M T + ++ ++LL G G+ Y G TGE + V G Sbjct: 948 CSKAAALRGSMGDGTAFGGESADSISQQLLSFG-YNYHGKDVFYSGITGELMQGYVFFGP 1006 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 +Y +L H+V DKMHARSTG S++T+QP G+++ GG R GEME + YGA+ L E Sbjct: 1007 IYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNE 1066 Query: 1290 MLTVKSD----DV---------NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 L + SD D+ N R K + MP +F +L++E++ +G++ Sbjct: 1067 RLLISSDMFTADICHVCGNLGYNNRCTYCKT---KGTTSKVNMPYAFKLLIQELQGMGVS 1123 Query: 1337 IEL 1339 + L Sbjct: 1124 LRL 1126 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 105/509 (20%), Positives = 187/509 (36%), Gaps = 90/509 (17%) Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPIS 499 +D+ D GN+R + G + F L + R VK + L D+ P N K + Sbjct: 360 LDERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRP---FNVKQLM 416 Query: 500 AAVKEFF----------GSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE-- 546 + E G L +F M++ ++ I++LG +TR + FE Sbjct: 417 ESKMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGM--MTRLASSFEKT 474 Query: 547 -----VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 R + P+ +G VCP +TPEG + GL+ + + +Q + R + + Sbjct: 475 RKVSGPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVT-LDLNDNYVRAAAHALGVE 533 Query: 602 EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV----TCRSKGESSLFSRDQVDYMDVST 657 EI ++ + +Y N L + L T R G ++ +ST Sbjct: 534 EIDTVTPTDFLHYCTVFLNGTLIGIHRYPNRLCAGIRTLRRSGRLH-------PHVSIST 586 Query: 658 Q------QVVSVGASLIPFL-EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 Q Q+ S G ++ L D A+ A++ R L + G+ V V Sbjct: 587 QPRQRTVQIGSDGGRIVRLLIIVRDGKPAVTSAHLDRLR-DRLCTHNDFLAEGLTEYVDV 645 Query: 711 DSG-----------------------VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 + ++ + G++ Y ++ + M G+ Sbjct: 646 NESNDCLIAVYPADIGPYTTHLEVEPLSLLGVVAGIIPYPHHNQSARNTFQSAM--GKQA 703 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 + L +Y R++ + P P+ R ++ T +L G N V M + Sbjct: 704 LGTVALNQYIRADTVLLLGAYP----QRPLCRTKAMS---LTHYEKLGAGINAMVCVMSY 756 Query: 808 NGYNFEDSILVSERVVQED-------RFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 +GY+ ED+ + ++ + R + +++ A D L PE+ N G Sbjct: 757 SGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDVILPPEK------NSGTG 810 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTP 889 L+ G+ GA V D+LV K TP Sbjct: 811 KFKALNPDGVAGKGALVQQYDVLVNKFTP 839 >UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota RepID=B6KTL0_TOXGO Length = 1388 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 130/263 (49%), Gaps = 26/263 (9%) Query: 1042 LAPGVLKIVKVYLAVKRRIQP--GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 LA LK + L ++ +P GDK A RHG KG++S + P EDMP+ E+G DI+ N Sbjct: 1047 LAKSGLKGCRASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLVPDILFN 1106 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK- 1158 P G PSRM IG ++E+ G AA A+ Q+ REF ++ AD + K Sbjct: 1107 PHGFPSRMTIGMLIESMAGKAA--------AVHGAYQDATPFREFPPQS----ADGKNKW 1154 Query: 1159 VDLSTFSDE----EVMRLAENLRKGM-PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 VD + E R E R+ TPV + K L++ G G LY Sbjct: 1155 VDQGGYHGWVKRGERYRTPEEERQAQDEPETPV-----DYFGKALMRAG-YQYYGTEELY 1208 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 G G + G +Y +L H+V DK R+TG +T QP+ G+ + GG RFGEM Sbjct: 1209 SGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVRATGPVDALTHQPVKGRKRHGGVRFGEM 1268 Query: 1274 EVWALEAYGAAYTLQEMLTVKSD 1296 E AL ++GAA LQ+ L SD Sbjct: 1269 ERDALISHGAAALLQDRLLHCSD 1291 >UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RER1_PLAYO Length = 1470 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 4/234 (1%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KGV+S++ P EDMP+ E+G D++ NP G+PSRM IG ++E+ G AA Sbjct: 1156 GDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGMLIESICGKAAS 1215 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 G +I+A ++ K + F D G + ++ + +E ++ + Sbjct: 1216 IYGKRIDAT--PFRKYTKQKSFNNPWID-GCGAKGFLNKQDENADEKKTTIKSSTENSDT 1272 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 +D + K LL G G LY G G + + G +Y +L H+ DK Sbjct: 1273 TEISYDEKIDFFAKLLLNKG-YDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDK 1331 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 R TG +T QPL GK + GG R GEME L ++G ++ + E + SD Sbjct: 1332 AQVRRTGPVCHLTHQPLKGKKKHGGIRLGEMERDGLISHGCSFIINERFLMNSD 1385 >UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E3T5_TRIVA Length = 1142 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 138/317 (43%), Gaps = 88/317 (27%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 +++K+ A RR + GDK + RHG KGVI I P EDMPY E+G D+++NP G PSRM Sbjct: 890 QVIKIKTADFRRPELGDKFSSRHGQKGVIGLIVPQEDMPYTEDGICPDMIMNPHGFPSRM 949 Query: 1108 NIGQILET---HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 +G+++E +G+ IG+ + F Sbjct: 950 TVGKMIELVSGKVGILTGRIGNG----------------------------------TAF 975 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 S + V +A++L IA SG+ L G TGE Sbjct: 976 SSDRVKDIADDL-----IA------------------AGYSYSGKDMLMSGITGEPLYAY 1012 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G ++ L H+V DKM AR+TG +T+QP G+++ GG R GEME L YGAA Sbjct: 1013 IFFGPVFYQSLKHMVKDKMQARATGQVQYLTRQPTQGRSRQGGMRLGEMERDCLIGYGAA 1072 Query: 1285 YTLQEMLTVKSD------------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVL 1326 L E + + SD + +TK Y IV MP + +L Sbjct: 1073 SILYERMLISSDVYEANVCAKCGFIGYEGYCTHCKTKEYMKIVR--------MPYACKLL 1124 Query: 1327 LKEIRSLGI--NIELED 1341 E+ ++GI + LED Sbjct: 1125 FYELMAMGIAPKVRLED 1141 >UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium RepID=B3L5F6_PLAKH Length = 1539 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 123/253 (48%), Gaps = 20/253 (7%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KGV+S++ P EDMP+ E+G D++ NP G+PSRM IG ++E+ G AA Sbjct: 1203 GDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGMLIESICGKAAC 1262 Query: 1123 GIGDKINA--MLKQQQEVAKLREFIQRAYDLG--ADVRQ------KVDLSTFSDEEVMRL 1172 G +I+A K ++ + E+I G V+Q K S EEV Sbjct: 1263 MYGKRIDATPFRKYTKQKSFNNEWIDNCGVKGFLEQVKQGKNEDGKDSSSHAPGEEVGHS 1322 Query: 1173 AENLRKG-MPIA-TP-------VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + +K +P TP +D + K LL G G LY G G + Sbjct: 1323 HKGKKKNDIPKGETPKGEKNNITYDEKIDYFAKLLLNKG-YDYYGTELLYSGIYGVPLQA 1381 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + G +Y +L H+ DK R TG +T QPL GK + GG R GEME L ++G Sbjct: 1382 HIFFGVIYYQRLRHMAYDKAQVRRTGPICNLTHQPLKGKKKHGGIRLGEMERDGLISHGC 1441 Query: 1284 AYTLQEMLTVKSD 1296 ++ + E + SD Sbjct: 1442 SFIINERFLINSD 1454 >UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 3 RepID=RPB2_IIV3 Length = 1140 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 128/307 (41%), Gaps = 65/307 (21%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 +IVKV + R + GDK KG I P EDMP+ +G DI++NP +PSR Sbjct: 885 CRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSR 944 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M I QI+ T +G + Y + + R Sbjct: 945 MTINQIISTVMG----------------------------KLYTVNPNPR---------- 966 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKEL---LKLGDLPTSGQIRLYDGRTGEQFER 1223 R G F +KEL LKL SG +Y G TGE+ + Sbjct: 967 ---------FRNGNS-----FQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQS 1012 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G Y +L H+V DKMHARS G + + +QP G++Q GG RFGEME + +GA Sbjct: 1013 TIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGA 1072 Query: 1284 AYTLQEMLTVKSD----DVNGRTKMYKNIVDGNHQM------EPGMPESFNVLLKEIRSL 1333 L E + + SD DV M + H +P S LL+E+ + Sbjct: 1073 TQFLNERMFLNSDPFQIDVCKDCGMMSSTSKKCHHCGSINVKRCNIPYSCKNLLQELNGM 1132 Query: 1334 GINIELE 1340 GI +++ Sbjct: 1133 GIKTKID 1139 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 30/189 (15%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV--KERLSLGDLD 485 ++KK + K VD+ D ++R+ + GE+ FR+ + ++ + R D+ Sbjct: 374 MVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYKKFQKTCITQIRNRKPDIS 433 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQ-------LSQFMDQNNP----LSEITHKRRISALG 534 + I + + ++G + +SQ + NP L+ + RR+ + Sbjct: 434 NFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQVV---NPKVSLLANYSSLRRV-VIP 489 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 +E E+R +HP+ VCP+ETPEG +G + +++V+ Q V Sbjct: 490 ESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFCQ-------------V 536 Query: 595 TDGVVTDEI 603 T G+ T EI Sbjct: 537 TTGISTCEI 545 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 17/140 (12%) Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE-- 848 L E G N VA + GYN EDSI++++ + F TI + + E Sbjct: 750 LNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEKKNGIIEERI 809 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 EI ++ + + + GIV + V GD+L+ KVT K + Q +EKL+ Sbjct: 810 EIPSNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKNKNQ---DEKLV------ 860 Query: 909 KASDVKDSSLRVPNGVSGTV 928 DSS+ V +G G V Sbjct: 861 ------DSSVIVQHGEEGYV 874 >UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomycetales RepID=C4QY42_PICPG Length = 1165 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 115/257 (44%), Gaps = 50/257 (19%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 DDL L++V + + R+ Q GDK + RHG KGV S+ P DMP+ E G D+++N Sbjct: 863 DDLGDSELQMVTIKYRITRQPQIGDKFSSRHGQKGVCSRKWPQIDMPFTETGIQPDVIIN 922 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P PSRM IG +E+ G A G + Q K E D AD Sbjct: 923 PHAFPSRMTIGMFVESLAGKAGALHG------IAQDSTPWKFNE-----DDTPAD----- 966 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 F E+++ N P +Y G TGE Sbjct: 967 ----FFGEQLISAGYNYHGNEP------------------------------MYSGVTGE 992 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL Sbjct: 993 ELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRNGGIRIGEMERDALI 1052 Query: 1280 AYGAAYTLQEMLTVKSD 1296 +G A+ LQ+ L SD Sbjct: 1053 GHGTAFLLQDRLLNCSD 1069 >UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AT93_BABBO Length = 1283 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 116/236 (49%), Gaps = 19/236 (8%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA- 1121 GDK A RHG KG++S P E+MP+ E+G DI+ NP G+PSRM IG+++E G +A Sbjct: 990 GDKFASRHGQKGILSMAWPAENMPFLESGIIPDIIFNPHGLPSRMTIGKLIECMAGKSAA 1049 Query: 1122 -KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 G K +++A ++I G + R S EE + E Sbjct: 1050 IHGAFQDATCFRKYPKQMATGNKWIDHGGLKGWEER---GFRYMSKEEELSKTE------ 1100 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 D + K LL+ G G +Y G G + + +G ++ +L H+V Sbjct: 1101 -------DDVIDYFGKTLLQAG-YDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVS 1152 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 DK R+TG +T+QP+ G+ GG RFGEME +L A+GA+ LQ+ L SD Sbjct: 1153 DKAQVRATGPVDAITKQPVKGRKNRGGIRFGEMERDSLIAHGASALLQDRLIHCSD 1208 >UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplantae RepID=Q01GR3_OSTTA Length = 999 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 54/250 (21%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L+ VK+ + R Q GDK + RHG KG + EDMP+ G DI++NP +PSR Sbjct: 741 LRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSR 800 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IGQ++E +G K+ A + ++ + Sbjct: 801 MTIGQLVECIMG--------KVAACMGKEGD----------------------------- 823 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 ATP F +I +L G +Y+G TG + + Sbjct: 824 ----------------ATP-FTPVTAEDISTMLHKCGYQKRGNEVMYNGHTGRMLDAQIF 866 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G Y +L H+VDDK+H+R G ++T+QP+ G+++ GG RFGEME + ++GAA Sbjct: 867 IGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASF 926 Query: 1287 LQEMLTVKSD 1296 L+E L +SD Sbjct: 927 LKERLMDQSD 936 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 18/166 (10%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGDLD 485 ++ +L+ G+ DD DH GN+R+ G + FR ++ + V+ + + Sbjct: 211 MIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGK 270 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISAL 533 + Q I AK I+ +K + +SQ +++ + S ++H RRI++ Sbjct: 271 EIQLQLAIKAKTITQGLKYSLATGNWGSQGAQDIRAGVSQVLNRLSYSSTLSHLRRINS- 329 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 P G RE + R +H + +G +CP ETPEG +GL+ +L++ A Sbjct: 330 -PIG--REGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMA 372 >UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4MYU5_THEPA Length = 1244 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 50/298 (16%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K+ K+ + R + GDK + RHG KGV+ I EDMP+ E+G D+++NP G PSRM Sbjct: 978 KMYKIMVRQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSRM 1037 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +G++LE ++ G+ VD + FS+ Sbjct: 1038 TVGKLLELVASKSSVFSGNF-------------------------------VDSTPFSNS 1066 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 L +L K ++I ++L G+ LY G +G + + Sbjct: 1067 YSDNLCNDLNNS--------GSNKMSDICDILIKNGFHPKGKEILYSGISGNPINTLIFI 1118 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y +L H+V DK+HAR G +T+QP G+++ GG R GEME L AYG++ L Sbjct: 1119 GPIYYQRLKHMVTDKIHARGRGPRQPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLL 1178 Query: 1288 QEMLTVKSDDVN----------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 E L + SD N G K N + +P + +L +E++++ I Sbjct: 1179 VERLMLSSDVFNIEVCSSCGFMGYNNFCK-FCQNNSLAQVSLPYACKLLFQELQAMNI 1235 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/279 (22%), Positives = 129/279 (46%), Gaps = 52/279 (18%) Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN---------LF 389 N LD+ ++++ D N RL AL+ I + +RP R + F + Sbjct: 325 NGLDYITFLNDLYNED-INSRLDALMYIGKKIRP-----RVLGKGFFSSNKDRAPKSKQM 378 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 ED +D+ + R+ + +++ + SG + ++ +++++ N +DD DH G Sbjct: 379 ILEDTHDI--LSRVLLSHIPMKDCRDFSGKIKTLSLM--AHRVLNVVNNVEPLDDKDHYG 434 Query: 450 NRRIRSVGEMA----ENQFRVGLVRVERAVK----------------ERLSLGDLDTLMP 489 N+R+ G+M E+ ++ L ++++++ E + D+ LMP Sbjct: 435 NKRLELAGQMISILFEDFYKKFLSNMKKSIESILVKYLEANPNPAKGENSNFPDIFGLMP 494 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK-RRISALGPGGLTRERAGFE-- 546 D+I +A G+ + +F + + +S++ + IS++G +T+ + FE Sbjct: 495 TDIITNGMQNAIAT---GNWNIKRFRMEKSGVSQVLSRLSYISSIG--MMTKTDSQFEKG 549 Query: 547 -----VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 R + P+ +G +CP +TPEG + GL+ +LS+ Sbjct: 550 RKVSGPRALQPSQFGILCPCDTPEGESCGLVKNLSLMTH 588 >UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2EN74_TRIVA Length = 1104 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 118/261 (45%), Gaps = 50/261 (19%) Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 IT D VL +V + V R GDK + RHG KGV S P E+MP+ ENG D Sbjct: 813 ITTTSDDGKRVLSVVLKFRMV-RTPTIGDKFSSRHGQKGVFSFPWPQENMPFCENGITPD 871 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 +++NP PSRM IG ++E+ G L+ Q+ A Sbjct: 872 VIINPHAFPSRMTIGMLIESMCGK------------LRASQDCAFF-------------- 905 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 D + F+ +E R+ + E+ ++L G +Y G Sbjct: 906 ----DATPFTHDEKNRITD-------------------EVGQMLAKEGFEYYGNEAMYSG 942 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TGEQF+ + +G +Y +L H+V DK R+TG + +T+QPL G+ + GG R GEME Sbjct: 943 ITGEQFKADIFMGVVYYQRLRHMVGDKYQVRATGKMNNITRQPLKGRKKGGGIRLGEMER 1002 Query: 1276 WALEAYGAAYTLQEMLTVKSD 1296 L A G + L++ SD Sbjct: 1003 DGLLAQGVTFLLRDRFMWCSD 1023 >UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y3J9_CLAL4 Length = 1232 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 113/259 (43%), Gaps = 52/259 (20%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 DD + + + V R GDK + RHG KGV S+ P DMPY E+G D+++ Sbjct: 927 ADDTGDSECQQITIKYRVTRAPLIGDKFSSRHGQKGVCSRKWPTVDMPYSESGIQPDVII 986 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP PSRM IG +E+ G A G + Q Sbjct: 987 NPHAFPSRMTIGMFVESLAGKAGALHG-----------------------------IAQD 1017 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPV-FDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 FS+++ TP F G E LKL G +Y G T Sbjct: 1018 STPWKFSEDD---------------TPADFFG-------EQLKLAGYNYHGNEPMYSGVT 1055 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 GE+ + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME A Sbjct: 1056 GEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDA 1115 Query: 1278 LEAYGAAYTLQEMLTVKSD 1296 L +G AY LQ+ L SD Sbjct: 1116 LIGHGTAYLLQDRLLNSSD 1134 >UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 Tax=Neoptera RepID=RPA2_DROME Length = 1129 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 118/259 (45%), Gaps = 52/259 (20%) Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 DL+P K+V + L V R GDK A R G KG+ S+ P ED+P+ E+G DIV NP Sbjct: 851 DLSPK--KMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNP 908 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 G PSRM I ++ET MA KG N YD R Sbjct: 909 HGFPSRMTIAMMIET---MAGKGAAIHGNV------------------YD-ATPFR---- 942 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 FS+E A F ++L+ G G RLY G G + Sbjct: 943 ---FSEENT-------------AIDYFG--------KMLEAGGYNYYGTERLYSGVDGRE 978 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + G ++ +L H+V DK RSTG+ T QP+ G+ + GG RFGEME AL + Sbjct: 979 MTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALIS 1038 Query: 1281 YGAAYTLQEMLTVKSDDVN 1299 +GAA+ LQ+ L SD + Sbjct: 1039 HGAAFLLQDRLFHNSDKTH 1057 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/179 (22%), Positives = 81/179 (45%), Gaps = 24/179 (13%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF--RV--GLVRVERAVKERLS 480 I+ +++KL GK +V+++D + + G + + RV + +V R ++++L+ Sbjct: 346 IVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLT 405 Query: 481 LGD---LDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQN-NPLSE 523 D +M Q M A + A++ F + ++ M +N N + Sbjct: 406 SPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRY 465 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++H R A+ G E R + P +G +CP+ TP+G GL+N L++ + + Sbjct: 466 MSHFR---AIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEIS 521 >UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata RepID=B6AI41_9CRYT Length = 1341 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 32/260 (12%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 + + L + R GDK A RHG KG++S + P E+MP+ E+G DI+ NP G PSRM + Sbjct: 1037 ISLKLRIVRNPMVGDKFASRHGQKGILSMLWPHENMPFGESGIVPDILFNPHGFPSRMTV 1096 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 G ++E G AA G + + ++ I ++G D+ ++ + F Sbjct: 1097 GMLIECMAGKAACLHGASALDATPFHRNITD-KQTILEDKEMGIDLSKQSTVDYFG---- 1151 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 K LLK G G L++G TG + + +G Sbjct: 1152 --------------------------KALLKTG-FQYFGCEPLFNGMTGTEMPCHIFMGV 1184 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 +Y +L H+V DK RSTG +T+QP+ G+ + GG RFGEME +L +YG + + + Sbjct: 1185 IYYQRLRHMVADKAQVRSTGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSIIAD 1244 Query: 1290 MLTVKSDDVNGRTKMYKNIV 1309 L SD+ Y ++ Sbjct: 1245 RLLKCSDEHKAYVCPYCGLI 1264 >UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota RepID=Q5CSG7_CRYPV Length = 1281 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 120/251 (47%), Gaps = 38/251 (15%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V + L + R GDK A RHG KG++S + P E+MP+ E+G DI+ NP G PSRM I Sbjct: 983 VSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSESGMVPDILFNPHGFPSRMTI 1042 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA---DVRQKVDLSTFSD 1166 G +LE+ G AA I A L A ++ DLS S+ Sbjct: 1043 GMLLESMGGKAA----------------------CIHGARSLDATPFNINISDDLSR-SE 1079 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 E E+ + G F A L+ G LY+G TG + + Sbjct: 1080 EN----CEDDKAGEKTTVDYFGKA--------LERAGFQYYGCEPLYNGMTGVELPCHIF 1127 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L +YG + Sbjct: 1128 MGVIYYQRLRHMVADKAQVRATGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSI 1187 Query: 1287 LQEMLTVKSDD 1297 L + L + SD+ Sbjct: 1188 LVDRLLICSDE 1198 >UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata RepID=B6KDI3_TOXGO Length = 1332 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 126/306 (41%), Gaps = 68/306 (22%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + KV + R + GDK + RHG KGV+ I P ED+P+ E+G D+++NP G PSR Sbjct: 1079 CRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSR 1138 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI--QRAYDLGADVRQKVDLSTF 1164 M V K+ E I + A +GA Sbjct: 1139 MT-----------------------------VGKMMELIAGKSALQVGA----------- 1158 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + G F G + E+L SG+ L G TGE + Sbjct: 1159 -----------CQYGT-----AFGGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTY 1202 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 V G +Y KL H+V DK+HAR G L+T+QP G+A+ GG R GEME L AYG++ Sbjct: 1203 VFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEGRAKEGGLRLGEMERDCLVAYGSS 1262 Query: 1285 YTLQEMLTVKSD----------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 L E L + SD + G G H MP + +L +E+ S+ Sbjct: 1263 ALLMERLMLSSDVFEASVCSTCGLMGYEGWCPYCKSGKHVAPIRMPYACKLLFQELMSMN 1322 Query: 1335 INIELE 1340 + L Sbjct: 1323 VCPRLH 1328 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 38/198 (19%) Query: 413 EIEGSGILSKDDIIDVM-KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVG 467 E GS +K + +M ++++D + +DD D+ GN+R+ G++ E+ F+ Sbjct: 486 ETTGSDFRAKTRFLCLMIRRVLDAASDPSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRF 545 Query: 468 LVRVERAVKERLS-----------LG---------DLDTLMPQDMINAKPISAAVKEFFG 507 V++ LS LG D +P D+I + + A+ G Sbjct: 546 CTHVKKQADYALSRYHQARGGAGGLGSRKDEVPYPDCFRNLPTDIIT-RGMQTALST--G 602 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGP-GGLTRERAGFE-------VRDVHPTHYGRVC 559 + + +F + + +S++ R+S + G +TR + FE R + P+ +G +C Sbjct: 603 NWTIKRFRMERSGVSQVLS--RLSYIATLGMMTRINSQFEKGRKVSGPRALQPSQWGMLC 660 Query: 560 PIETPEGPNIGLINSLSV 577 P +TPEG + GL+ +L++ Sbjct: 661 PCDTPEGESCGLVKNLAL 678 >UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVD4_PHATR Length = 1211 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 139/307 (45%), Gaps = 63/307 (20%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 ++KV L RR + GDK A RHG KGV I P ED+P++E G D+++NP G PSRM Sbjct: 955 LIKVMLRQVRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGFPSRMT 1014 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 +G++LE +G A G ++ Y S F +E Sbjct: 1015 VGKLLELLVGKAGLYEG--------------------RQGYS-----------SAFGEE- 1042 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAE-IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 F A A+ E L L +G+ LY G GE + + Sbjct: 1043 ------------------FGSADTAQSASEALLRNGLNYTGKDILYSGTNGEPLDAYIFS 1084 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G ++ KL H+V DK HAR+ G +++T+QP G+++ GG R GEME L AYG + + Sbjct: 1085 GPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLI 1144 Query: 1288 QEMLTVKSDDVNGRTKMYKNIV----------DGNHQMEPGMPESFNVLLKEIRSLGI-- 1335 E L SD + + ++ G + +P + +L +E++S+ + Sbjct: 1145 MERLMHSSDAFSANVCLTCGLLQYEGWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLP 1204 Query: 1336 NIELEDE 1342 + L+D+ Sbjct: 1205 RLRLQDK 1211 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 25/172 (14%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERLSLGD 483 ++++++ + GK +DD D+ GN+R+ G + E+ F++ ++R LS + Sbjct: 385 IVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKIFNKDLKRQADLVLSKPN 444 Query: 484 -------LDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGP 535 + T+ P + N + A G+ L +F MD+ ++ +SALG Sbjct: 445 RTQAFDVVKTIRPDTITNGMINAIAT----GNWVLKRFRMDRAGVTQVLSRLSYMSALGM 500 Query: 536 GGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 +TR + FE R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 501 --MTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGH 550 >UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas RepID=C1FDM4_9CHLO Length = 1192 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 119/237 (50%), Gaps = 51/237 (21%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK + RHG KGV+S + P ED+PY +++G+ DI++NP PSRM IG +LE+ MA+ Sbjct: 910 GDKFSSRHGQKGVLSFLCPEEDLPYIEKSGSRPDILINPHAFPSRMTIGMLLES---MAS 966 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF--SDEEVMRLAENLRKG 1179 K GA + +D S F +++E Sbjct: 967 KA----------------------------GALDGRFIDASPFQAANDETH--------- 989 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 I +P E E+L+ SG + +G TGE+F+ + VG +Y +L H+V Sbjct: 990 --IISPT------REYGEMLRKHGYNYSGSETMVNGLTGERFDVDIFVGLVYYQRLRHMV 1041 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 DK RS G + +TQQP+ G+ GG RFGEME AL A+G++Y + + L SD Sbjct: 1042 SDKFQVRSLGPNNPLTQQPIKGRKAGGGIRFGEMERDALIAHGSSYLIHDRLHACSD 1098 >UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E7H8_TRIVA Length = 1177 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 112/250 (44%), Gaps = 51/250 (20%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L++ +V RR + GDK RHG KGV EDMP+ +G DI++NP +PSR Sbjct: 916 LQLARVRTRQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTRDGMVPDIIMNPHALPSR 975 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IG ++E LG K A+ Q + Sbjct: 976 MTIGHLIECLLG--------KCTAIDPQNADEGD-------------------------- 1001 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 ATP F G I + L+ G LY+GR+G++ + + Sbjct: 1002 ----------------ATP-FCGVTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIY 1044 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G Y +L H+V DK HAR+ G SL+ +QP+ G+A+ GG RFGEME L A+G + Sbjct: 1045 FGPTYYQRLKHMVGDKAHARALGRKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAM 1104 Query: 1287 LQEMLTVKSD 1296 +++ L SD Sbjct: 1105 MRDRLLENSD 1114 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 112/239 (46%), Gaps = 46/239 (19%) Query: 383 SLFENLFFSEDRYDLSAVG------------RMKFNRSLLREEI------EGSGILSKDD 424 S+ E+ F +DR L VG R++ + LL E + + S SK Sbjct: 303 SIEESSSFLDDRACLDFVGKRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTTSKAF 362 Query: 425 IIDVM-KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE----RL 479 I M LI++ G+ + DD DH N+R+ G + F + ++ +++ + RL Sbjct: 363 FIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHLEKRL 422 Query: 480 SLGDLDT-------LMPQDMINAKPISAAVKEFFGSSQ------------LSQFMDQNNP 520 G++D L Q ++N K I++ ++ G+ +SQ +++ Sbjct: 423 KDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGSKAGVSQMLNRLTF 482 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 LS +++ RR + P G + G R +H TH+G +CP+ETPEG + GLI +L++ + Sbjct: 483 LSTLSNLRRTNT--PIGRDGKLTG--PRHLHNTHWGYICPVETPEGQSCGLIKNLALMS 537 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%) Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR-DTKLGPE 848 + +L G N+ VA + GYN EDS++++ + F + + + D G Sbjct: 773 NFNKLPAGINVTVAICCYTGYNQEDSLMLNASAIDRGLFRSYFFRTYKETAEGDGTEGAS 832 Query: 849 EITA--DIPNVGEAAL---SKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 E+ D V L SK+D G+ GA V+ D+++GK++P T+L Sbjct: 833 EVFTFPDPQTVKGIKLHDSSKIDADGLAIPGAVVSAQDVIIGKISPDSPTEL 884 >UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S96_GUITH Length = 1049 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 72/344 (20%) Query: 1010 QLEQLAEQYDELKH------EFEKKLEAKRRKITQGDDLAPGV--------LKIVKVYLA 1055 L + + ++ H EF K +KIT + + L + K + Sbjct: 752 SFRHLTQLFSKVNHNNKEVFEFLNKSNNNNQKITSNLKYSDNLVVVKYGLDLTLAKFLIR 811 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 R + GDK + RHG KG+ I P +DMP+ E G DI++NP G PSRM IG+ +E Sbjct: 812 ECRNPEIGDKFSSRHGQKGICGFIKPQQDMPFSEKGICPDIIMNPHGFPSRMTIGKTIEI 871 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 L + G K ++ + +K++++T Sbjct: 872 ILSKSGCISG--------------KFKD---------GSIFKKININTI----------- 897 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 +K L G ++G+ +Y+G TG + G ++ +L Sbjct: 898 -------------------VKSLRSFG-FVSNGEDFMYNGITGNLINNQIYSGIVFYQRL 937 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK+H+R+TG S +T QP+ G+++ GG RFGEME L ++GA+ + L + S Sbjct: 938 KHMVKDKIHSRATGIKSKLTYQPVEGRSKGGGLRFGEMERDCLISFGASELALDRLLLNS 997 Query: 1296 DDVNGRTKMYKNIVDGNHQ----MEPGMPESFNVLLKEIRSLGI 1335 D + I+ ++ + +P + +LL+E++S+ I Sbjct: 998 DCYEAKFDKNSGIIHTSNSNTNVVAVKIPYACKLLLQELQSMNI 1041 >UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium RepID=Q5CPZ8_CRYPV Length = 1287 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 108/249 (43%), Gaps = 54/249 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 +I KV RR + GDK + RHG KGV+ I ED+P+ E G D+++NP G PSRM Sbjct: 1035 QIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIMNPHGFPSRM 1094 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +G KL E I + Sbjct: 1095 TVG-----------------------------KLLELISSKASV---------------- 1109 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 L N R G F G E + L SG+ L G TGE E + V Sbjct: 1110 ----LDGNYRYGT-----AFGGTPLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFV 1160 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y KL H+V DKMHAR G ++T+QP G+++ GG R GEME L AYGA+ L Sbjct: 1161 GPIYYQKLKHMVLDKMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLL 1220 Query: 1288 QEMLTVKSD 1296 E L + SD Sbjct: 1221 IERLMLNSD 1229 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 38/181 (20%) Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERL------ 479 K+++D +DD D+ GN+RI G++ E+ F+ V ++ + + L Sbjct: 453 KRVLDASEDNSLLDDKDYYGNKRIELAGQLISILFEDLFKRFSVLTKKQIDQTLIRYFQT 512 Query: 480 ---------------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSE 523 + D +P D+I + + A+ G+ + +F M+++ Sbjct: 513 RDASKAGTGRDDSNSTYPDCFRNLPTDII-TRGMQTALST--GNWSIKRFRMERSGMTQV 569 Query: 524 ITHKRRISALGPGGLTRERAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLINSLS 576 +T I++LG +TR + FE R + P+ +G +CP +TPEG + GL+ +L+ Sbjct: 570 LTRFSYIASLGI--MTRVDSQFEKARKVSGPRALQPSQWGILCPCDTPEGESCGLVKNLA 627 Query: 577 V 577 + Sbjct: 628 L 628 >UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q27493_CAEEL Length = 1127 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 100/234 (42%), Gaps = 50/234 (21%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KG+ S + P+E +P+ E G DI+ NP G PSRM IG ++E+ G AA Sbjct: 854 GDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAA 913 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 G+ +A S F E Sbjct: 914 THGENYDA-------------------------------SPFVFNE-------------- 928 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 D ELL G Y G G Q E + G +Y +L H++ DK Sbjct: 929 -----DNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADK 983 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 R+TG +T QP+ G+ + GG RFGEME A+ A+G ++ LQ+ L SD Sbjct: 984 FQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSD 1037 >UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG45_ENTDI Length = 1170 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 134/304 (44%), Gaps = 69/304 (22%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K ++V + R Q GDK + RHG KG + EDMP+ G DI++NP +PSRM Sbjct: 912 KYIRVKMRSIRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRM 971 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +GQ++E LG K+ A++ Q ++ D Sbjct: 972 TVGQLVECLLG--------KVGALVGDVQSGTPFQK----------------------DI 1001 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 V ++ E L K LK G L+ G TG + + V + Sbjct: 1002 TVDKIGERLHK--------------------LKY---QRRGYEALFSGHTGRKLDSLVYI 1038 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y +L HLVDDK+H R+TG Y+ +T+QPL G+++ GG R GEME + ++G + L Sbjct: 1039 GPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLL 1098 Query: 1288 QEMLTVKSDD--------------VNGRTKMYKNIV--DGNHQMEPGMPESFNVLLKEIR 1331 +E L + SD N + ++ D H + +P + +L +E+ Sbjct: 1099 KERLFLASDKYQIYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELM 1158 Query: 1332 SLGI 1335 S+ + Sbjct: 1159 SMAV 1162 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 22/223 (9%) Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM-KK 431 GE + E + E SE+ L G K + LL I SK + M Sbjct: 306 GEHSKKTNKEGVIE--IVSENIQKLQRDGTEKLKKDLL-PHIGTDNFESKAQFLGYMTNH 362 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMP 489 + + GK DD DHL +R+ G + F+ L R+ + + +L L TL Sbjct: 363 FLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNKTLEY 422 Query: 490 QDMINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISALGPGG 537 ++ I++ + G+ ++Q + + S + + R+IS+ G Sbjct: 423 AKPLSFPTITSDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRKISSPVEG- 481 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 +R + R +H T +G +CP ETPEG + GL+ LS+ AQ Sbjct: 482 ---KRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQ 521 >UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putative n=1 Tax=Babesia bovis RepID=A7AM79_BABBO Length = 1171 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 115/246 (46%), Gaps = 54/246 (21%) Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 K+ L R + GDK + RHG KGV+ I E++P+ E+G D+++NP G PSRM +G Sbjct: 919 KIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLIMNPHGFPSRMTVG 978 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 ++LE +AAK A+L F D Sbjct: 979 KMLEL---VAAKA------AVLN----------------------------GIFED---- 997 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 TP + A + L+K G P +I LY G TGE E + G M Sbjct: 998 ------------GTPFEADSLPAIERSLIKKGFHPAGKEI-LYSGITGEPLETLIFTGPM 1044 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y KL H+V DK+HAR+ G +T+QP G+++ GG R GEME L AYGA+ L E Sbjct: 1045 YYQKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCLIAYGASGLLVER 1104 Query: 1291 LTVKSD 1296 L + SD Sbjct: 1105 LMLSSD 1110 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 125/277 (45%), Gaps = 51/277 (18%) Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFE---------NLFFSEDRYDLSA 399 E L + N R+ AL+ + R +RP R A+ F N ED +D+ Sbjct: 297 EDLYNEGINTRMDALLYVGRKVRP-----RPLAKGFFTSSKERLPKTNQNLIEDTHDI-- 349 Query: 400 VGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM 459 + R+ + +R + SG + + + ++++ + +GK +DD DH GN+R+ G++ Sbjct: 350 LTRVLLSHIPMRNCRDFSGKIK--SLCLMARRVLSVASGKEPMDDKDHYGNKRLELAGQL 407 Query: 460 A----ENQFRVGLVRVERAVKERLS----------------LGDLDTLMPQDMINAKPIS 499 E+ F+ L ++++ + L+ D +P D+I + + Sbjct: 408 ISILFEDLFKAFLGQLKKQIDATLTRHYEIVSNCHGGEQAKYPDCLVSLPTDII-TRGMQ 466 Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHK-RRISALGPGGLTRERAGFE-------VRDVH 551 A + G+ + +F + + +S+I + IS LG +T+ + FE R + Sbjct: 467 ATIST--GNWNIKRFRIERSGVSQILSRLSYISCLG--MMTKTNSQFEKGRKVSKPRALQ 522 Query: 552 PTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 P+ G +CP +TPEG + GL+ +LS+ G +E Sbjct: 523 PSQLGLICPCDTPEGESCGLVKNLSLMNHVTTDGDIE 559 >UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus RepID=Q6YH81_9VIRU Length = 1221 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 129/303 (42%), Gaps = 64/303 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K+VKV L R + GDK A KG + EDMP+D+NG D+++NP PSRM Sbjct: 973 KLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKNGVVPDLIINPHAFPSRM 1032 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 + +L+ G AA +G +A ++++V +R+ + A + G D V Sbjct: 1033 TVNYLLQMCFGTAACKLGKTYDATAFEREDV--VRDIAEAAKEAGIDCWDSV-------- 1082 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 LY G TG + + + Sbjct: 1083 --------------------------------------------LYSGSTGRRLPTKIFM 1098 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 +L H+V KMH+R+ G +T+QP+ G+++ GG + GEME W ++G + +L Sbjct: 1099 APCPYQRLRHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEMEQWCKISHGVSESL 1158 Query: 1288 QEMLTVKSDDVN-------GRTK---MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 +E + SD GR Y + D +P + +L +E+RS+GI+I Sbjct: 1159 KESVYDTSDKYEVPVCKECGRISDHFEYCRMCDATDVSLVKLPYTTKILFQELRSIGISI 1218 Query: 1338 ELE 1340 + Sbjct: 1219 AFK 1221 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 32/209 (15%) Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + R +L EI G + + + ++K++ D +G G D D L N+R+ + G + Sbjct: 388 YVRHILAGEIFLHGGDAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLL 447 Query: 465 RVGLVR--VERAVKERLSLGDLDTLMPQDMI-NAKPISAAVKEFFGSSQ----------- 510 GL++ V+ VK S G L P ++ N+ ++ ++ F + Sbjct: 448 D-GLLKQYVKLFVK---SAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPPSY 503 Query: 511 ----LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 +SQ + NN + ++H RRI ++ +R +H +HYG +CP ETPEG Sbjct: 504 VRVGVSQVLSNNNYGARVSHLRRIMH----AVSFRGKNIRMRQLHSSHYGFLCPYETPEG 559 Query: 567 PNIGLINSLSVYAQTNEYGF-LETPYRKV 594 +G++ +++ GF LETP V Sbjct: 560 EKVGIVLNMA-----EGVGFSLETPREAV 583 >UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 Tax=Fungi/Metazoa group RepID=RPA2_YEAST Length = 1203 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 112/250 (44%), Gaps = 50/250 (20%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L+ V + ++R Q GDK + RHG KGV S+ P DMP+ E G DI++NP PSR Sbjct: 898 LQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSR 957 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IG +E+ G K A+ Q+ +I D AD + Sbjct: 958 MTIGMFVESLAG--------KAGALHGIAQDSTP---WIFNEDDTPAD---------YFG 997 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 E++ + N P +Y G TGE+ + Sbjct: 998 EQLAKAGYNYHGNEP------------------------------MYSGATGEELRADIY 1027 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G ++ Sbjct: 1028 VGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFL 1087 Query: 1287 LQEMLTVKSD 1296 LQ+ L SD Sbjct: 1088 LQDRLLNSSD 1097 >UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta RepID=A9TK27_PHYPA Length = 1238 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/312 (26%), Positives = 131/312 (41%), Gaps = 74/312 (23%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 +I KV L RR Q GDK + HG KGVI + ED+P+ G DI++NP +P+R Sbjct: 978 RIAKVRLRCSRRPQAGDKFSSMHGQKGVIGAVLNQEDLPFTRQGVVPDIIINPHALPNRQ 1037 Query: 1108 NIGQILETHLG--MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 +GQ+LE+ LG MA +G + KQ + + Q Y G Sbjct: 1038 TVGQLLESLLGKLMAVRGTQQSVAPFQKQSATRKFMDQLHQSEYQRGG------------ 1085 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 +E++ G TG + + Sbjct: 1086 -------SESMTNGT------------------------------------TGMRLNSLI 1102 Query: 1226 TVGYMYMLKLNHLVDDKMHAR-STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 ++G + +L+H+V+DK+ R S G +T+QP+ + GG +FGEME + +GA+ Sbjct: 1103 SIGATFYQRLDHMVEDKIKYRGSGGPVDALTRQPVKNRKNMGGVKFGEMERDCMIGHGAS 1162 Query: 1285 YTLQEMLTVKSDDVN----------------GRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 TL+E + SD R + K G H ++ +P S +L + Sbjct: 1163 VTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRFCKFCCTGKHVVQIQIPYSCKLLWQ 1222 Query: 1329 EIRSLGINIELE 1340 E+ S+GI + LE Sbjct: 1223 ELLSMGITLFLE 1234 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 17/149 (11%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--------LGDLDTLMPQDMIN 494 DD DH N+R+ G++ +QFR + +ER VK RL L L T + + ++ Sbjct: 451 DDKDHFKNKRLDLTGQLLSHQFRKAMAHLERDVKRRLHPYLVKGRDLAPLKTYVTEAIVT 510 Query: 495 AKPISA------AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 + SA E SS + + + NP++ ++H R+ P + + R Sbjct: 511 KQMQSAFTLGNWNTNEGLKSSGVVAVLKRMNPMATLSHLRQFRLNLPPPM---KPTDPAR 567 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSV 577 + +++GR+CP +T +G GLI SL++ Sbjct: 568 HPNYSYWGRICPTQTSDGAECGLIKSLAL 596 >UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit RPA2 n=10 Tax=Ascomycota RepID=RPA2_SCHPO Length = 1174 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 116/260 (44%), Gaps = 54/260 (20%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G+D+ + + V L + R GDK + RHG KG+ S+ P DMP+ E+G DI++ Sbjct: 875 GNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIII 934 Query: 1099 NPLGVPSRMNIGQILETHLGMA--AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 NP PSRM IG +E+ G A G+ + +Q+ A Sbjct: 935 NPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTA----------------- 977 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 + + E++++ N P +Y G Sbjct: 978 -----ADYFGEQLVKAGYNYHGNEP------------------------------MYSGI 1002 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TG++ + + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME Sbjct: 1003 TGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERD 1062 Query: 1277 ALEAYGAAYTLQEMLTVKSD 1296 A+ +G ++ +Q+ L SD Sbjct: 1063 AVIGHGTSFLMQDRLMNCSD 1082 >UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus RepID=A4RSZ5_OSTLU Length = 1145 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 136/309 (44%), Gaps = 83/309 (26%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK + RHG KGV+S + P EDMP+ D G D+++NP PSRM IG ++E+ +AA Sbjct: 887 GDKFSSRHGQKGVLSFLWPEEDMPFSDRTGLRPDVIINPHAFPSRMTIGMLVES---LAA 943 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF--SDEEVMRLAENLRKG 1179 K GA D + F SD+E+ Sbjct: 944 KA----------------------------GASTGIFADATPFKHSDKEI---------- 965 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + E +LL+ G RL +G TGE F + +G +Y +L H+V Sbjct: 966 ----------SPTEEYGKLLRESGYNFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHMV 1015 Query: 1240 D--DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 H RSTG + +T QP+ G+ GG RFGEME +L A+G AY L +L + SD+ Sbjct: 1016 SLFHTFHVRSTGPNNPLTMQPIKGRKSGGGIRFGEMERDSLLAHGVAY-LVSLLHICSDN 1074 Query: 1298 VNG-------------------RTKMYKN------IVDGNHQMEP-GMPESFNVLLKEIR 1331 + RT Y + + D H++E +P F L E+ Sbjct: 1075 RDAWVCNMCGSLIAPLTCVASIRTDEYSSRRTSCRVCDSAHKLERISIPHVFIYLTAELA 1134 Query: 1332 SLGINIELE 1340 ++ I+++++ Sbjct: 1135 AMNISVQVK 1143 >UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota RepID=C4Q1D7_SCHMA Length = 1304 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 113/249 (45%), Gaps = 53/249 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K KV + + Q GDK A RHG KG EDMP+ G DI++NP +PSRM Sbjct: 1042 KFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRM 1101 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 IG ++E G + G ++G D + F+D Sbjct: 1102 TIGHLIECLQGKVSANKG------------------------EIG-------DATPFND- 1129 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 A N+RK I LL+ +G +Y+G TG + + + Sbjct: 1130 -----AVNVRK----------------ISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFL 1168 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y +L H+VDDK+H+RS G ++ +QP+ G+++ GG RFGEME A+GAA L Sbjct: 1169 GPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFL 1228 Query: 1288 QEMLTVKSD 1296 +E L SD Sbjct: 1229 RERLFFASD 1237 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 29/159 (18%) Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVR-----VERAVKERLSLGDLDTLMPQDMINA 495 +VDD DH GN+R+ G + FR GL R + ++ + G L + I + Sbjct: 507 DVDDRDHYGNKRLDLAGPLLAFLFR-GLFRNLTKEIRLYAQKFIDKGKDFNL--ELAIRS 563 Query: 496 KPISAAVKEFFGSSQ-------------LSQFMDQNNPLSEITHKRRI-SALG-PGGLTR 540 + I+ +K + +SQ +++ S ++H RR+ S +G G L R Sbjct: 564 QIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAR 623 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 R +H T +G +CP ETPEG +GL+ +L++ A Sbjct: 624 PR------QLHNTLWGMICPAETPEGHAVGLVKNLALMA 656 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 11/112 (9%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE-EIT 851 EL G N VA + GYN EDS++++E +Q F + + ++T+ G + E Sbjct: 896 ELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYK--DQETRHGMDLEEV 953 Query: 852 ADIPN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVT--PKGETQL 895 + PN + A KLD+ G++ G V+G D+L+GK P+ E ++ Sbjct: 954 FEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEM 1005 >UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular organisms RepID=Q67ZK6_ARATH Length = 639 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 129/303 (42%), Gaps = 66/303 (21%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + HG KGV+ + ++ P+ G DIV+NP PSR GQ+LE L +K Sbjct: 378 GDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL---SK 434 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 GI I +E AY + R P Sbjct: 435 GIACPIQ------------KEGSSAAY-----------------------TKLTRHATPF 459 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 +TP EI E L G R+Y+GR+GE + +G + +L H+ +DK Sbjct: 460 STPGV-----TEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDK 514 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----V 1298 + R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E L SD + Sbjct: 515 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHI 574 Query: 1299 NGRTKMYKNIVD-------------------GNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + K Y N+++ +H + +P +L +E+ S+GI + Sbjct: 575 CRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNF 634 Query: 1340 EDE 1342 + E Sbjct: 635 DTE 637 >UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 Tax=Eukaryota RepID=RPA2_DICDI Length = 1130 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 111/253 (43%), Gaps = 50/253 (19%) Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 P + + V L R GDK + RHG KGV+S++ P +MP+ E+G D+++NP Sbjct: 861 PSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAF 920 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG ++E G A G +A Q E A D + K + Sbjct: 921 PSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDEN-------NTAIDFFGEQLAKAGFNR 973 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 F +E+ +Y G TG++FE Sbjct: 974 FGNEQ-------------------------------------------MYSGTTGKEFEC 990 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + G Y +L H+V DK R+ G + +T+QP+ G+ GG RFGEME +L A+GA Sbjct: 991 EIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGA 1050 Query: 1284 AYTLQEMLTVKSD 1296 ++ L + L SD Sbjct: 1051 SFCLNDRLMKSSD 1063 >UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota RepID=C8VU19_EMENI Length = 1225 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 134/307 (43%), Gaps = 66/307 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 +I+KV RR + GDK + RHG KGV I DMP+ + G DI++NP G PSRM Sbjct: 966 QIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRM 1025 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +G++LE G A G Q Y + FS Sbjct: 1026 TVGKMLELVAGKAGVLSG--------------------QHGYG-----------TCFSGT 1054 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 V ++ + L I + G G+ L G TGE V Sbjct: 1055 PVEQMTQTL------------------IDKGFSYG-----GKDYLTSGITGEALPFYVFT 1091 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y KL H+V DKMH+R+ G + +T+QP G+++ GG R GEME L AYG + L Sbjct: 1092 GPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1151 Query: 1288 QEMLTVKSD----DVN------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN- 1336 E L + SD DV G + ++ +P + +L++E+ S+ + Sbjct: 1152 LERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQELMSMNVTA 1211 Query: 1337 -IELEDE 1342 ++LEDE Sbjct: 1212 RLKLEDE 1218 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 35/208 (16%) Query: 402 RMKFNRSLLREEIEG--SGILSKDDIIDV------------MKKLIDIRNGKGEVDDIDH 447 +M + R+ ++E +E S I+S ++ D+ ++++ +N VDD D+ Sbjct: 382 QMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDY 441 Query: 448 LGNRRIRSVGEMA----ENQFRVGL----VRVERAVKERLSLGDLDTLMPQDMINAKPIS 499 LGN+R+ G++ E+ F+ + +++ + +R + D M ++ I+ Sbjct: 442 LGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGM-HSNHIT 500 Query: 500 AAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRD 549 + G+ L +F M++ ++ I+ALG +TR + FE R Sbjct: 501 QGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALG--MMTRISSQFEKTRKVSGPRA 558 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSV 577 + P+ +G +C +TPEG GL+ +L++ Sbjct: 559 LQPSQFGMICLADTPEGEACGLVKNLAL 586 Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVS----ERVVQEDRFTTIHIQELACVSRDTK 844 T +L GQN VA M ++GY+ ED+++++ +R + ++ + S TK Sbjct: 816 TKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTK 875 Query: 845 --LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 L P D P + + AL L+ G+ +G +V G++ + K TP Sbjct: 876 DILSPPTYENDAP-IRKHAL--LESDGLAAVGEQVNAGEVYINKSTP 919 >UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophyta RepID=Q9LK40_ARATH Length = 1172 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 128/301 (42%), Gaps = 66/301 (21%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + HG KGV+ + ++ P+ G DIV+NP PSR GQ+LE L +K Sbjct: 911 GDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL---SK 967 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 GI I +E AY + R P Sbjct: 968 GIACPIQ------------KEGSSAAY-----------------------TKLTRHATPF 992 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 +TP EI E L G R+Y+GR+GE + +G + +L H+ +DK Sbjct: 993 STPGV-----TEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDK 1047 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----V 1298 + R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E L SD + Sbjct: 1048 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHI 1107 Query: 1299 NGRTKMYKNIVD-------------------GNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + K Y N+++ +H + +P +L +E+ S+GI + Sbjct: 1108 CRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNF 1167 Query: 1340 E 1340 + Sbjct: 1168 D 1168 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 32/172 (18%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV----RVERAVKERLSLGD 483 ++K L++ GK + ++ D N+RI GE+ E + RV L ++ RA+++ LS GD Sbjct: 375 MVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLS-GD 433 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRI 530 D + ++A I+ + F + S + + NPL + RR Sbjct: 434 GDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRR- 492 Query: 531 SALGPGGLTRERAGF-----EVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 TR++ + + R HP+H+GRVC + TP+G N GL+ ++S+ Sbjct: 493 --------TRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSL 536 >UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=C6LZ34_GIALA Length = 1239 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 126/286 (44%), Gaps = 54/286 (18%) Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 E L + + LK E + +T +D G L ++KV RR + GDK + RHG Sbjct: 946 ETLIKSPESLKSPLETITYIDKVLVTTNND---GNL-LIKVLTREPRRPEVGDKFSSRHG 1001 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 KGV I D+P+ G D+++NP G PSRM + ++LE + +K + Sbjct: 1002 QKGVCGLIVSQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLEL--------LSNKSSCF 1053 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 +Q + R T +DEE + Sbjct: 1054 RGEQTDGTCFR--------------------TKTDEEFI--------------------- 1072 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 AE+ + L+ SG+ LY G TG+ + G +Y KL H+V DK+H+R TG Sbjct: 1073 -AELYDSLRAAGFSYSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDKIHSRGTGPI 1131 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 +++T+QP G+ GG R GEME +YGA+ L E + SD+ Sbjct: 1132 TMLTRQPTEGRRVHGGLRMGEMERDCAISYGASALLLERFMLSSDE 1177 >UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyceta RepID=B9WJL4_CANDC Length = 1166 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 112/247 (45%), Gaps = 54/247 (21%) Query: 1054 LAVKRRI--QP--GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 + +K RI QP GDK + RHG KGV S+ P DMP+ E+G D+++NP PSRM I Sbjct: 875 ITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTI 934 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 G +E+ G A G + Q K E D AD + E++ Sbjct: 935 GMFVESLAGKAGALHG------IAQDSTPWKFNE-----QDTPAD---------YFGEQL 974 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 ++ N P +Y G TGE+ + +G Sbjct: 975 LKAGYNYHGNEP------------------------------MYSGATGEELRCDIYIGC 1004 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G ++ LQ+ Sbjct: 1005 VYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQD 1064 Query: 1290 MLTVKSD 1296 L SD Sbjct: 1065 RLLNCSD 1071 >UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Isoetes sp. JL-2005 RepID=Q1L6W4_9TRAC Length = 623 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 54/247 (21%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 VKV L R Q GDK + HG KGV+ ED+P+ +G D+++NP P+R + Sbjct: 387 VKVRLRECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPDLIINPHAFPTRQTL 446 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ++E G AA A+ ++Q D + F + + Sbjct: 447 GQLMECLAGKAA--------AVSAREQ-----------------------DATPFVERSL 475 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 R +E L K +G +Y GR G + + V +G Sbjct: 476 PRFSEELHKA-----------------------GFQRTGMECMYSGRVGTRMKVRVNIGV 512 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L H+ +DKM R TGS +T+QP+ + + GG RFGEME + A+GA+ TLQE Sbjct: 513 TFYQRLTHMAEDKMKYRRTGSVHPLTRQPIVDRKRHGGIRFGEMERDCMIAHGASATLQE 572 Query: 1290 MLTVKSD 1296 L + SD Sbjct: 573 RLFLLSD 579 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 5/103 (4%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI---QELACVSRDTKLGPEE 849 EL GQN VA + GYN EDSI++++ + F ++H ++ + D + G E Sbjct: 251 ELHNGQNPIVAVLSDTGYNQEDSIILNQSSLDRGMFRSMHFHTHKDALKPTLDQRFG-EP 309 Query: 850 ITADIPNV-GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 +D+ ++ KLD G+ ++GA ++ D+++GK+ G Sbjct: 310 SESDVGGYKKQSHYEKLDSDGLPHVGAALSSSDVIIGKLFTAG 352 >UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4530 Tax=cellular organisms RepID=RPB2_YEAST Length = 1224 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 112/250 (44%), Gaps = 54/250 (21%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 LK VKV + + Q GDK A RHG KG I EDMP+ G D+++NP +PSR Sbjct: 961 LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSR 1020 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M + HL I +L + Sbjct: 1021 MTVA-----HL----------IECLLSK-------------------------------- 1033 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 V L+ N P +G I +LL+ + G +Y+G TG++ + Sbjct: 1034 --VAALSGNEGDASPFTDITVEG-----ISKLLREHGYQSRGFEVMYNGHTGKKLMAQIF 1086 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G Y +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME + A+GAA Sbjct: 1087 FGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASF 1146 Query: 1287 LQEMLTVKSD 1296 L+E L SD Sbjct: 1147 LKERLMEASD 1156 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 19/152 (12%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPISA 500 DD DH G +R+ G + F+ ++ + + + ++ + + INAK I++ Sbjct: 396 DDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITS 455 Query: 501 AVKEFFGSSQ-------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + +SQ +++ S ++H RR + P G R+ + Sbjct: 456 GLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNT--PIG--RDGKLAKP 511 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 R +H TH+G VCP ETPEG GL+ +LS+ + Sbjct: 512 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMS 543 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 19/157 (12%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 EL GQN VA ++GYN EDS+++++ + F ++ + + + E T Sbjct: 816 ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITE-TF 874 Query: 853 DIPN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL--RA 904 + P + KLD+ G++ G V+G D+++GK TP ++P+E+ L R Sbjct: 875 EKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTP-----ISPDEEELGQRT 929 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVE 940 + K +D+S + + +G V V V T +DG++ Sbjct: 930 AYHSK----RDASTPLRSTENGIVDQVLVTTNQDGLK 962 >UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=128 Tax=Eukaryota RepID=RPB2_HUMAN Length = 1174 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 128/304 (42%), Gaps = 69/304 (22%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K K+ + R Q GDK A RHG KG EDMP+ G DI++NP +PSRM Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 IG ++E G + G ++G D + F+D Sbjct: 977 TIGHLIECLQGKVSANKG------------------------EIG-------DATPFND- 1004 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 A N++K I LL G LY+G TG + + + Sbjct: 1005 -----AVNVQK----------------ISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFI 1043 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y +L H+VDDK+H+R+ G ++ +QP+ G+++ GG RFGEME A+GAA L Sbjct: 1044 GPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFL 1103 Query: 1288 QEMLTVKSDD--------------VNGRTKMY--KNIVDGNHQMEPGMPESFNVLLKEIR 1331 +E L SD N RT Y + + MP + +L +E+ Sbjct: 1104 RERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELM 1163 Query: 1332 SLGI 1335 S+ I Sbjct: 1164 SMSI 1167 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 33/164 (20%) Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR---------------------VERAVK 476 G+ E+DD DH GN+R+ G + FR G+ + +E A+K Sbjct: 378 GRRELDDRDHYGNKRLDLAGPLLAFLFR-GMFKNLLKEVRIYAQKFIDRGKDFNLELAIK 436 Query: 477 ERL-SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 R+ S G +L + + K A + +SQ +++ S ++H RR+++ P Sbjct: 437 TRIISDGLKYSLATGNWGDQKKAHQA------RAGVSQVLNRLTFASTLSHLRRLNS--P 488 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 G R+ + R +H T +G VCP ETPEG +GL+ +L++ A Sbjct: 489 IG--RDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA 530 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI-- 850 EL G N VA + GYN EDS++++ V F ++ + EE+ Sbjct: 771 ELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFE 830 Query: 851 ---TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT--PKGETQL 895 + A KLD+ G++ G V+G D+++GK P+ E +L Sbjct: 831 KPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDEL 880 >UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=A0BY74_PARTE Length = 1115 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 107/234 (45%), Gaps = 50/234 (21%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + RHG KGV+S + P DMP+ E+G DI++NP PSRM IG ++E+ MAAK Sbjct: 857 GDKFSSRHGQKGVMSLLWPQIDMPFSESGMVPDIIINPHAFPSRMTIGMLIES---MAAK 913 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 N + + E + + EN Sbjct: 914 A-----NVLQGEMFETHPFQNY-----------------------------EN------- 932 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 D + K+L+K G G LY G G + + G +Y +L H+V DK Sbjct: 933 -----DNVVDYFGKQLIKHG-YNYHGNETLYSGIYGTPLKVDIYFGVVYYQRLRHMVSDK 986 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 ARS G ++TQQP+ G+ + GG R GEME AL A+G AY + + L SD Sbjct: 987 SQARSMGPVDVLTQQPIKGRKKGGGIRLGEMERDALIAHGVAYCINDRLLKCSD 1040 >UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=B3L0J5_PLAKH Length = 1371 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 110/249 (44%), Gaps = 54/249 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K KV + R Q GDK A RHG KG I EDMP+ +GT DI++NP VPSRM Sbjct: 1113 KFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSDGTFPDIIMNPHAVPSRM 1172 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +G + + K+ A Sbjct: 1173 T--------IGHLVECLAGKVAA------------------------------------- 1187 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 + G ATP F EI + L G LY+G G+ + + + Sbjct: 1188 --------IEGGEGDATP-FSKITVQEISQRLHNLGYEKYGNDVLYNGHNGKMLKSKIFI 1238 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y +L H+V+DK+HARS G +++T+QP G+++ GG RFGEME + ++G+A L Sbjct: 1239 GPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKML 1298 Query: 1288 QEMLTVKSD 1296 +E L +SD Sbjct: 1299 KERLFEESD 1307 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 29/202 (14%) Query: 402 RMKFNRSLLREEI-----EGSGILSKDD--IIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 R+ + + LLR+E+ G G+ SK I ++ +L+ G+ + DD DH G +R+ Sbjct: 393 RILYAKELLRKEVLPHMGTGPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLD 452 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKE---------F 505 G + + F ++ + VK R+ +D P D+ A + + + Sbjct: 453 IAGPLMASSFSTYFRKMAKDVK-RVLQRQIDNNKPFDVAGAVRSCSQITQGMQYQLATGN 511 Query: 506 FGSSQ--------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 +G + ++Q +++ S ++H RR++ L RE + R +H TH+G Sbjct: 512 WGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNT----PLGREGKMAKPRQLHNTHWGM 567 Query: 558 VCPIETPEGPNIGLINSLSVYA 579 +CP ETPEG ++GL+ +LS+ Sbjct: 568 ICPFETPEGQSVGLVKNLSLMC 589 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 EL G N VA M + GYN EDS+++++ + F ++ + S + + G I + Sbjct: 831 ELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYT--SEEKQQGSLIIES 888 Query: 853 -------DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 + N+ +KLD G++ G V G DI++GKV+P E Sbjct: 889 FEKPSIRYVKNLKRGDYTKLDNDGLIAPGIRVLGDDIIIGKVSPNIE 935 >UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bacillariophyta RepID=B7FQD9_PHATR Length = 1147 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 116/258 (44%), Gaps = 48/258 (18%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G+D G V + L R GDK + RHG KGV+S + P EDMP+ E+G D+++ Sbjct: 861 GNDSGKGADNKVSITLRFPRNPVLGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVII 920 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP PSRM IG ++E+ G + G+ NA Sbjct: 921 NPHAFPSRMTIGMMVESMAGKSGALHGNFQNA---------------------------- 952 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + FS E G ++ F E L+ G LY G +G Sbjct: 953 ---TPFSFHE---------SGDKVSVDYFG--------EQLQAAGYNYYGSEPLYSGVSG 992 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + + +G +Y +L H+V DK R+TG + +T+QP+ G+ + GG R GEME +L Sbjct: 993 CVMQADLYIGVVYYQRLRHMVLDKYQVRATGPTNELTRQPIKGRKKGGGIRLGEMERDSL 1052 Query: 1279 EAYGAAYTLQEMLTVKSD 1296 ++G A+ LQ+ L SD Sbjct: 1053 LSHGTAFLLQDRLLNCSD 1070 >UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota RepID=Q0UYS5_PHANO Length = 1616 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 108/249 (43%), Gaps = 54/249 (21%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 + + L V R GDK + RHG KGV S+ P DMP+ E+G D+++NP PSRM I Sbjct: 1323 LSIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPSIDMPFSESGIQPDVIINPHAFPSRMTI 1382 Query: 1110 GQILETHLGMAA--KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 G +E+ G A GI +Q A VD F Sbjct: 1383 GMFVESLAGKAGALHGIAQDSTPFRFDEQNTA-------------------VD---FFGH 1420 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 ++M+ N P +Y G TG++ + + Sbjct: 1421 QLMKAGYNYYGNEP------------------------------MYSGITGQELAADIYI 1450 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y +L H+V+DK R+TG + T QP+ G+ + GG R GEME AL A+G A+ L Sbjct: 1451 GVVYYQRLRHMVNDKYQVRTTGPINSTTGQPIKGRKKGGGIRVGEMERDALIAHGTAFLL 1510 Query: 1288 QEMLTVKSD 1296 Q+ L SD Sbjct: 1511 QDRLMNCSD 1519 >UniRef50_Q8KRK0 RpoB protein (Fragment) n=1 Tax=Pediococcus pentosaceus RepID=Q8KRK0_PEDPE Length = 66 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 51/55 (92%), Positives = 54/55 (98%) Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 AIEEGN+VIAQANSNLD++G FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS Sbjct: 1 AIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 55 >UniRef50_C0GNU6 RNA polymerase Rpb2 domain 6 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNU6_9DELT Length = 1518 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 117/264 (44%), Gaps = 72/264 (27%) Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPY--------------------DENGTPVDIV 1097 R ++PGDK+ GRHGNKGVIS+I P +MPY ++ T V+++ Sbjct: 512 RPLEPGDKIMGRHGNKGVISRILPDREMPYFLDSMHGITDLRSSSHFHGEEQAHTHVEVI 571 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 LNPLGV RMN GQ+LE H G+A + I +++ EF Q + Sbjct: 572 LNPLGVIGRMNTGQLLECHTGLAMRCIPERM--------------EFYQNS--------- 608 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY---D 1214 GMP ++ + ++ +LL + +G+ RL+ + Sbjct: 609 ---------------------GMPFSSVDIESLRQ----DLLSTKIVDETGKARLFWRDE 643 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMH-ARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 Q +G Y++KL+H+ DK H ++T QP+ G+++ GG R GEM Sbjct: 644 AGNHVQTGHASMIGVQYLMKLDHMARDKFHVCGKKPPRCMITNQPVKGRSRGGGLRLGEM 703 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDD 1297 E W + A + E+L D Sbjct: 704 ENWCIIERQAWDVIDELLQKSEPD 727 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 54/197 (27%) Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFE----VRDVHPTHYGRVCPIETPEGPNIGL 571 D N L+E R++SA + G + VR++ P H G +CP+ETPE +IGL Sbjct: 205 DTTNKLAETAQGRQVSAKSLRCHRKTMIGSKPEDNVRNLLPEHTGMICPVETPESESIGL 264 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE 631 + L+ RK + + + +A E N EEG Sbjct: 265 VMHLA---------------RKARPELWSQD----AAFNE--------NDQRSEEG---- 293 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 L + D +++ S V P+++H D RA+MGA +QA+ Sbjct: 294 -----------ILKTPDPDNFLGYSACMV--------PYIQHTDPTRAMMGAKNMKQALS 334 Query: 692 TLRADKPLVGTGMERAV 708 + + PL+ TG E V Sbjct: 335 LTQGEAPLIRTGHEEEV 351 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 ++ +G+N+ VA++PW G+N+ED I++S + +F ++ + K GP Sbjct: 360 DMDIGRNLLVAYLPWYGFNYEDGIVISRSAAE--KFLSV---------KKHKFGPYFCPG 408 Query: 853 DI-PNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 + P ++ KLD G+ G EV GD+L Sbjct: 409 NYRPANPDSKWRKLDRDGLAPQGQEVKSGDVLAA 442 >UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophyta RepID=A3BQ32_ORYSJ Length = 1257 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 110/245 (44%), Gaps = 54/245 (22%) Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V L R + GDK A HG KGVI ++ E+ P+ G DIV+NP G P+R GQ Sbjct: 992 VTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQ 1051 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +LE LG KGI LG R Sbjct: 1052 LLEAALG---KGIA-------------------------LGGATR--------------- 1068 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 ATP + E ++L K G G+ + +GRTGE+ PV G + Sbjct: 1069 ----------YATPFTSPSVEVITEQLHKAGFSRWGGE-SVINGRTGERAASPVFTGPTF 1117 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +L+H+ +DK+ R+TG +T+QP+ + ++GG +FGEME L A+GAA L E L Sbjct: 1118 YQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERL 1177 Query: 1292 TVKSD 1296 + SD Sbjct: 1178 FLLSD 1182 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 GQN V+ G+N EDS++++ ++ F T H + + + ++ + N Sbjct: 861 GQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHKENIN 920 Query: 857 VGEAALSK-----LDESGIVYIGAEVTGGDILVGKVTPKGE 892 G+ K LD G+ YIGA + DI++GKV+ GE Sbjct: 921 FGKTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGE 961 >UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum RepID=RPC2_DICDI Length = 1608 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 117/261 (44%), Gaps = 58/261 (22%) Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 +T GDD ++K+ + RR + GDK + RHG KGV I EDMP+ + G D Sbjct: 1348 LTSGDDEQ----LLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPD 1403 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++NP G PSRM IG+++E G A + + G Sbjct: 1404 IIMNPHGFPSRMTIGKMIELLAGKAG----------------------VLSGKFGFG--- 1438 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 + F + V EN+ K + I+ G K D TSG Sbjct: 1439 ------TCFGGDRV----ENISKVL-ISKGFSYGGK-----------DYVTSGV------ 1470 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TGE + G ++ KL H+V DKMHAR+ G +T+QP G+A+ GG R GEME Sbjct: 1471 -TGEPLACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMER 1529 Query: 1276 WALEAYGAAYTLQEMLTVKSD 1296 L YGA+ + E L + SD Sbjct: 1530 DCLIGYGASALIMERLMISSD 1550 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 28/188 (14%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERLSLG- 482 +++++I K +DD D+ GN+RI G++ E+ F+ ++++V + ++ Sbjct: 352 MIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKAN 411 Query: 483 -----DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK-RRISALGPG 536 DL L+ D I + A+ G L +F + + +S++ + IS +G Sbjct: 412 RAENLDLPKLIRTDTI-TNGFTHAISS--GQWNLKRFRMERSGVSQVLSRLSYISCMG-- 466 Query: 537 GLTRERAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +TR ++ FE R + P+ +G +CP +TPEG ++ ++ +N + Sbjct: 467 MMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGE--ACLHPDTIITMSNGQ---QK 521 Query: 590 PYRKVTDG 597 P R++ DG Sbjct: 522 PIRQLKDG 529 >UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7F6Y6_SCLS1 Length = 1165 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 107/250 (42%), Gaps = 50/250 (20%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + + V L + R GDK + RHG KGV S+ P DMP+ E+G D ++NP PSR Sbjct: 871 CQAISVKLRIPRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFTESGIQPDTIINPHAFPSR 930 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IG +E+ G A L Q + D K + Sbjct: 931 MTIGMFVESLAGKAGA------------------LHGLAQDSTPFKFDEEHKA--GDYFG 970 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 ++M+ N P +Y G TGE+ + Sbjct: 971 HQLMKAGYNYYGNEP------------------------------MYSGITGEELHADIY 1000 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G +Y +L H+V+DK R+TG + +T QP+ G+ + GG R GEME +L A+G A+ Sbjct: 1001 IGVVYYQRLRHMVNDKYQVRTTGPVTQLTGQPIKGRKKGGGIRVGEMERDSLLAHGTAFL 1060 Query: 1287 LQEMLTVKSD 1296 LQ+ L SD Sbjct: 1061 LQDRLLNCSD 1070 >UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSL6_9ALVE Length = 1255 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 116/257 (45%), Gaps = 34/257 (13%) Query: 1044 PGVLKIVKVYLAVKRRI--QP--GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 PG +K +++K R+ P GDK + RHG KGV++ + P DMP+ +G DI+ N Sbjct: 947 PGGIKDGSERMSIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMPFSTSGISPDIMFN 1006 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G+PSRM IG ++E G AA G V F Q R K Sbjct: 1007 PHGMPSRMTIGMLIEFMAGKAAALTG----------MPVVNANSFRQ--------YRGKG 1048 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 L T + E A D E LK G LY G GE Sbjct: 1049 LLDTEHNNEKDPYAPG------------DTTAHEYFGETLKKFGYEYLGAEELYSGMHGE 1096 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L Sbjct: 1097 PLKTHIYMGVVYYQRLRHMVLDKFQVRATGPIDPLTRQPVKGRKKHGGVRFGEMERDSLI 1156 Query: 1280 AYGAAYTLQEMLTVKSD 1296 ++G + L + L SD Sbjct: 1157 SHGTSALLADRLLKCSD 1173 >UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota RepID=Q5KIB7_CRYNE Length = 1193 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/310 (27%), Positives = 137/310 (44%), Gaps = 70/310 (22%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 VK+ + R Q GDK A RHG KG I EDMP+ G DI++NP +PSRM Sbjct: 936 FVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMT 995 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 I G + +L + +ST + E Sbjct: 996 I---------------GHLVECLLSK--------------------------VSTLTGAE 1014 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 ATP + EA + ++L+ + G LY G TG + + V G Sbjct: 1015 ------------GDATPFTELTVEA-VSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFG 1061 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 Y +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME + ++G A L+ Sbjct: 1062 PTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1121 Query: 1289 EMLTVKSD-------DVNG--------RTKMYKNIVDGNHQM-EPGMPESFNVLLKEIRS 1332 E + SD DV G + + Y ++ + Q+ + +P + +L +E+++ Sbjct: 1122 ERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQA 1181 Query: 1333 LGINIELEDE 1342 + I + E Sbjct: 1182 MNIACRMYGE 1191 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 10/108 (9%) Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 850 EL GQN VA M ++GYN EDS+++++ + F +++ + + + E Sbjct: 784 FSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAE- 842 Query: 851 TADIPNVGEAA---------LSKLDESGIVYIGAEVTGGDILVGKVTP 889 T + P+ E +KLD G+V G V G DIL+GK P Sbjct: 843 TIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGKTAP 890 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 +SQ +++ S ++H RR + P G R+ + R +H TH+G VCP ETPEG G Sbjct: 451 VSQVLNRYTFASTLSHLRRTNT--PIG--RDSKAAKPRQLHNTHWGMVCPAETPEGSACG 506 Query: 571 LINSLSV 577 L+ +L++ Sbjct: 507 LVKNLAL 513 >UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8I793_CHLRE Length = 720 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 117/253 (46%), Gaps = 48/253 (18%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY-DENGTPVDIVLNPLGV 1103 G+ + + L R GDK A RHG KGV+S + P DMP+ G D+++NP Sbjct: 431 GLPQQANIRLRFNRNPMIGDKFASRHGQKGVLSILWPDTDMPFCAATGIRPDLIINPHAF 490 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG ++E+ + +KG GA Q VD S Sbjct: 491 PSRMTIGMLVES---LVSKG----------------------------GALAGQFVDASP 519 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 F + A+ + KG A E L + G GQ + G TG++ Sbjct: 520 F------QRADGVEKG---------NATERWGAYLERQG-FSRYGQETMISGVTGQEMPC 563 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V DK RSTG + +T+QP+ G+ GG RFGEME +L A+GA Sbjct: 564 DIYIGPVYYQRLRHMVSDKFQVRSTGPINAMTRQPIKGRKFGGGIRFGEMERDSLLAHGA 623 Query: 1284 AYTLQEMLTVKSD 1296 AY L + L SD Sbjct: 624 AYLLHDRLHACSD 636 >UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTL9_ENTBH Length = 1066 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 127/291 (43%), Gaps = 64/291 (21%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK RHG KG+ + + DMP+ ENG DI++NP PSRM IG ++E+ G AA Sbjct: 823 GDKFCSRHGQKGICAFLWNEIDMPFTENGLKPDIIINPHAFPSRMTIGMLIESMCGKAAV 882 Query: 1123 GIGDKINA--MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 G +N + + + +F +V +K+ F N Sbjct: 883 KFGKFVNGDPFIDNKNNDINVNKF---------NVNRKLKECGF----------NYYGNE 923 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 P+ + VF G + + + +G +Y +L H+V Sbjct: 924 PMYSGVF------------------------------GTELKTDIFIGLVYYQRLKHMVS 953 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 DK R G+ + TQQP+ G+ GG RFGEME L A+G++ +++ L SD Sbjct: 954 DKFQVRVGGAITSTTQQPVKGRKNKGGIRFGEMEKDTLIAHGSSALIKDRLLDCSDKTTF 1013 Query: 1301 R-TKMYKNIV--DGNHQMEPG--------MPESFNVLLKEIRSLGINIELE 1340 + KNI+ N + + G MP F LL E+ +G+NI+LE Sbjct: 1014 KYCYKCKNILFSSPNDKCKCGGIKSKNIKMPYVFKYLLAEL--MGMNIKLE 1062 >UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MW98_PHYIN Length = 1179 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/311 (26%), Positives = 130/311 (41%), Gaps = 84/311 (27%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + RHG KGV+S + P DMP+ E+G DI++NP PSRM +G ++E+ MAAK Sbjct: 914 GDKFSSRHGQKGVMSILWPQADMPFSESGISPDIIINPHAFPSRMTVGMLIES---MAAK 970 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 GA + +D + F E R+ + Sbjct: 971 ----------------------------TGALKGKYMDATPFQFSEKDRVID-------- 994 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 + G++ LK G LY G +G + + +G +Y +L H+V DK Sbjct: 995 ----YFGSQ-------LKEHGYNYMGSEPLYSGISGTVMQADIYIGVVYYQRLRHMVSDK 1043 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----- 1297 R+TG + +T+QP+ G+ + GG R GEME +L A+G A+ +Q+ L SD Sbjct: 1044 SQVRATGPMNSLTRQPVKGRKKGGGIRLGEMERDSLLAHGCAFLVQDRLLNCSDKHIATV 1103 Query: 1298 ----------------------------VNGRTKMYKNIVDGNHQMEP-GMPESFNVLLK 1328 + +T+ Y + +P MP F L Sbjct: 1104 CTNCGSLLSNATQRSTVETAGQGEIAVAMKSKTQWYCTVCQTGESCQPVAMPYVFRYLAN 1163 Query: 1329 EIRSLGINIEL 1339 E+ ++ I + L Sbjct: 1164 ELAAMNIKMSL 1174 >UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 Tax=Intramacronucleata RepID=RPA2_EUPOC Length = 1166 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 50/238 (21%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + RHG KGV+S + P DMP+ ENG D+++NP PSRM +GM + Sbjct: 891 GDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMT--------MGMLIQ 942 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 + K ++ + + V E QR + D +++ Sbjct: 943 SMAAKSGSLRGEFKTV----ETFQR----------------YDDNDIVGHFG-------- 974 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 KELL G G +Y G G + + +G +Y +L H+V DK Sbjct: 975 -------------KELLDKG-FNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDK 1020 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 AR TG ++T QP+ G+ + GG RFGEME +L A+GAAY L + L SD G Sbjct: 1021 SQARGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEG 1078 >UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=C5YHJ3_SORBI Length = 1251 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 107/250 (42%), Gaps = 54/250 (21%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + V L R GDK A HG KGV+ ++ E+ P+ G DIV+NP G P+R Sbjct: 984 VNFATVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTR 1043 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 GQ+LE LG KGI +G VR Sbjct: 1044 QTPGQLLEAALG---KGIA-------------------------MGGKVRY--------- 1066 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 P TP D I E L G+ + +G+TGE+ + V Sbjct: 1067 ------------ATPFTTPTVD-----VITEQLHKAGFSRWGEESVLNGQTGERMKSLVF 1109 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G + +L H+ +DK+ R+TG VT+QP+ K +FGG +FGEME + A+GAA Sbjct: 1110 MGPTFYQRLVHMAEDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAAAN 1169 Query: 1287 LQEMLTVKSD 1296 L E L SD Sbjct: 1170 LHERLFTLSD 1179 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 15/106 (14%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP- 855 GQN V+ G+N EDS++++ ++ F T+H++ S ++ +EIT + Sbjct: 858 GQNAIVSINVHQGFNQEDSLVLNRASLERGMFRTLHLK-----SYKAQVENKEITRRLKH 912 Query: 856 ----NVGE-----AALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 N G+ + LD G+ Y+GA + GDI++GKV+ GE Sbjct: 913 RESINFGKVQSKRGKVDSLDSEGLPYVGASLQSGDIVIGKVSESGE 958 >UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=Q9FXG4_ARATH Length = 1233 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 127/295 (43%), Gaps = 59/295 (20%) Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP------------- 1062 E Y + E K +RK G D P ++ V V + K+ Q Sbjct: 896 EPYCSIYDEVTNKTRHMKRK---GTD--PVIVDFVSVDMKSKKHPQRANIRFRHARNPII 950 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK + RHG KGV S++ P DMP++ G D+++NP PSRM I +LE+ +AA Sbjct: 951 GDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLES---IAA 1007 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 KG G+ + VD + F D E K Sbjct: 1008 KG----------------------------GSLHGKFVDATPFRDAVKKTNGEEESKSSL 1039 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 + ++ +LK G LY G G + + + +G +Y +L H+V D Sbjct: 1040 LVD---------DLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSD 1090 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 K RSTG +T QP+ G+ + GG RFGEME +L A+GA+Y L + L SD Sbjct: 1091 KFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSD 1145 >UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0ERH0_ENTDI Length = 1106 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 119/264 (45%), Gaps = 51/264 (19%) Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 +I GD++ G+ K V V + R GDK + RHG KG +S +DMP+ E+G Sbjct: 828 RIVGGDNIDSGLQKAV-VRVRYNRTPVIGDKFSSRHGQKGTLSLHYQEKDMPFTESGMTP 886 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 DI++NP PSRM I ++E+ + K+ A+ + Q+ + Sbjct: 887 DIIINPHAFPSRMTIAMLVES--------MASKVGALKGEYQDATPFK------------ 926 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 DEE + A + K+LLK G G LY Sbjct: 927 ----------FDEE-------------------NTAVDYFGKQLLKYG-YNYYGSEPLYS 956 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G G + + + +G +Y +L H V DK RSTG S+VT QP+ G+ + GG RFGEME Sbjct: 957 GIYGNELQSDIYIGVVYYQRLVHQVKDKYQVRSTGPISIVTHQPIKGRKRGGGIRFGEME 1016 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDV 1298 +L A+G + + + L SD Sbjct: 1017 RDSLVAHGTSMLVHDRLFECSDKC 1040 >UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lunularia cruciata RepID=Q1L6W1_9MARC Length = 789 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 103/242 (42%), Gaps = 53/242 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 KI KV L R Q GDK + HG KG++ + ED+P+ G DI++NP PSR Sbjct: 514 KIAKVKLRETRIPQVGDKFSRMHGQKGIVGMVFTQEDLPFTNEGIVPDIIINPHAFPSRQ 573 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +GQ+ E+ LG A G+++ Sbjct: 574 TLGQMCESALGKAIAKRGEQL--------------------------------------- 594 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 ATP + I E L G +Y+G TG+ + + Sbjct: 595 --------------FATPFNPASTVESITEALHESGYNGWGMETMYNGYTGKAMVAKIFI 640 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G + +L H+V+DK+ RS G +T+QP+ + + GG +FGEME L A+GAA TL Sbjct: 641 GSTFYQRLTHMVEDKIKYRSRGHVHPLTRQPVSDRKRHGGVKFGEMERDCLIAHGAAATL 700 Query: 1288 QE 1289 QE Sbjct: 701 QE 702 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 E+ GQN VA + GYN EDSI++ + + F T H + R + +A Sbjct: 373 EIFSGQNAIVAIACYTGYNQEDSIIMDQSALDRGMFRTQHYRTFKSEERSDHETFGKPSA 432 Query: 853 DIPNVGEAALSK---LDESGIVYIGAEVTGGDILVGKV 887 + G A+ L++ G+ YIG + D++VGK+ Sbjct: 433 ADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGKI 470 >UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926601 Length = 1371 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 115/261 (44%), Gaps = 56/261 (21%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G D L V + L ++R GDK A RHG KG++S P E+MP+ E+G DI+ Sbjct: 1089 GSDKGDRELLKVSIKLRIQRNPIIGDKFASRHGQKGILSVKWPAENMPFTESGMIPDIIF 1148 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP G PSRM I GM + + K A+ + + D Sbjct: 1149 NPHGFPSRMTI--------GMMIESMAGKSAAL-----------------HGITHD---- 1179 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATP-VFDGAKEAE--IKELLKLGDLPTSGQIRLYDG 1215 +TP +F K A + E+L G R+Y G Sbjct: 1180 ------------------------STPFIFSEKKPAAHYMGEILVKAGYNYYGNERMYSG 1215 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 G++ + + +G +Y +L H+V DK RSTG +T QP+ G+ + GG RFGEME Sbjct: 1216 INGKEMDVDIFIGIVYYQRLRHMVADKYQVRSTGPVDNLTHQPVQGRKRQGGIRFGEMER 1275 Query: 1276 WALEAYGAAYTLQEMLTVKSD 1296 AL A+G+ + L + L SD Sbjct: 1276 DALIAHGSGFLLHDRLFNCSD 1296 >UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta RepID=Q9C8S4_ARATH Length = 1114 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 108/235 (45%), Gaps = 41/235 (17%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK + RHG KGV S++ P DMP++ G D+++NP PSRM I +LE+ +AA Sbjct: 832 GDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLES---IAA 888 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 KG G+ + VD + F D E K Sbjct: 889 KG----------------------------GSLHGKFVDATPFRDAVKKTNGEEESKSSL 920 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 + ++ +LK G LY G G + + + +G +Y +L H+V D Sbjct: 921 LVD---------DLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSD 971 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 K RSTG +T QP+ G+ + GG RFGEME +L A+GA+Y L + L SD Sbjct: 972 KFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSD 1026 >UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenophorea RepID=Q236N3_TETTH Length = 1141 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 112/248 (45%), Gaps = 54/248 (21%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 I+K + RR + GDK + RHG KG+I I EDMP+ E G D+++NP G PSRM Sbjct: 885 IIKTIVRETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMT 944 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 V KL E LG+ + Sbjct: 945 -----------------------------VGKLLEL------LGS--------------K 955 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 L+ + G F G K A++ +L +G+ + G TGE + V G Sbjct: 956 AAVLSGQFKYGT-----AFGGDKMADLSSILVQNGFSYTGKDVIISGITGEYMQCYVFCG 1010 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 ++ +L H+V DK+HAR+ G + +T+QP G+A+ GG R GEME +L A+ ++ L Sbjct: 1011 PVFYQRLKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEMERDSLLAFASSNLLI 1070 Query: 1289 EMLTVKSD 1296 E L + SD Sbjct: 1071 ERLMISSD 1078 >UniRef50_Q48975 DNA-directed RNA polymerase (Beta) (Fragment) n=1 Tax=Mycoplasma capricolum RepID=Q48975_MYCCA Length = 345 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 133/225 (59%), Gaps = 33/225 (14%) Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG +F+ + + +G+++Y A II Sbjct: 130 KSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPGAYFNKELNR--KTGEMIYFADII 187 Query: 178 PYRGSWLDFEFDPK-------DNLFVRIDRRRKLPATIILRALNYTTEQILDLF-FEKVI 229 P RG+WL++E D K + L+V+ID+ RK AT +L A + + IL++F ++V+ Sbjct: 188 PSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDILNIFDNDEVL 247 Query: 230 FE-------IRDNKL----QMELVPERLR-GETASFDIEA---NGKVYVEKGRRIT-ARH 273 E I D K+ Q++ + +++R GETA+ + + N ++ ++ +T A Sbjct: 248 VETLQQDSIIGDFKIDWLNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGR 307 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + +K +K I KV+A+D +D + LI A + E+S Sbjct: 308 FKLKQKLSIK------NRILNKVIAEDILDANNNVLI-AKDTEVS 345 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 339 NDLDHGPYISETLRVDP-----TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 N D+ + ETL+ D D L+ + EIY+ +R GE T E A ++ F + Sbjct: 239 NIFDNDEVLVETLQQDSIIGDFKIDWLNQVQEIYKKIRQGETATSEGASKFINSILFDKR 298 Query: 394 RYDLSAVGRMKFNRSL 409 +YDL+ GR K + L Sbjct: 299 KYDLTKAGRFKLKQKL 314 >UniRef50_P42487 DNA-directed RNA polymerase subunit 2 n=7 Tax=African swine fever virus RepID=RPB2_ASFB7 Length = 1242 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 113/248 (45%), Gaps = 58/248 (23%) Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L +R + GDKM+ R GNKG+ + P DMP+ E+G D+++NP PSRM GQ++ Sbjct: 984 LRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMI 1043 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 ET +G+A NA+ Q V D + F V L+ Sbjct: 1044 ETTVGLA--------NAL----QGVV-------------------TDGTAFLPINVQLLS 1072 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 E L A+E L +G ++++G+TGE F+ + +G Y Sbjct: 1073 ERL-------------AQEG----------LRFNGCQKMFNGQTGEYFDAAIFIGPTYHQ 1109 Query: 1234 KLNHLV-DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L V DD+ S G +T QPL GK GG R GEME W L A GA +Q ++ Sbjct: 1110 RLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGA---MQTIIE 1166 Query: 1293 VKSDDVNG 1300 DD +G Sbjct: 1167 KSHDDSDG 1174 >UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQY8_ENCCU Length = 1110 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 125/296 (42%), Gaps = 63/296 (21%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 ++K L R + GDK + RHG KGV+ + EDMP+++ G DI++NP G PSRM Sbjct: 862 LIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDIIMNPHGFPSRMT 921 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 +G+I+E G A G Q +D + F + Sbjct: 922 VGKIVELISGKA-------------------------------GVLEGQILDSTAFKENS 950 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 V E + L+K G SG+ G TG + G Sbjct: 951 V----------------------EQTCELLIKHG-FSYSGKDCFTSGTTGAPLAAYIFFG 987 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 ++ +L H+V DK+H R+ G +++T+QP G+++ GG + GEME L YGA+ + Sbjct: 988 PVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLIT 1047 Query: 1289 EMLTVKSDDVNGRTKMYKNIV---------DGNHQMEPGMPESFNVLLKEIRSLGI 1335 E L SD ++ G ++ MP + +L +E+ S+ I Sbjct: 1048 ERLMTSSDVFEAYVCRSCGVLAFKGCCVACKGTKPVKVKMPYACKLLFQELMSMNI 1103 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 146/337 (43%), Gaps = 59/337 (17%) Query: 413 EIEGSGILSKDDIIDVM-KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR- 470 +IEG + K I +M ++L + DD D +GN+R G++ F R Sbjct: 302 QIEGCDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRF 361 Query: 471 -------VERAVKERLSLGDLDTL----MPQDMIN---AKPISAAVKEFFGSSQLSQF-M 515 +++ + +R + D L + +MI A+ IS G+ L +F M Sbjct: 362 NFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLARAIST------GNWNLKRFRM 415 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEV-------RDVHPTHYGRVCPIETPEGPN 568 +++ ++ ISALG +T+ + FE R +H + +G +CP++TPEG + Sbjct: 416 ERSGVTHVLSRHSYISALGM--MTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGES 473 Query: 569 IGLINSLSVYAQ----TNEYGFLETPYR-KVTD--GVVTDEIH---YLSAIEEGNYVIAQ 618 GL+ +L++ A+ ++ L+T Y+ V D V T EIH S G+ +I Sbjct: 474 CGLVKNLALLAEITTNSDTKPILDTVYKLGVVDINSVYTREIHQKDMFSVFLNGD-IIGI 532 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 N VE R KG F V V+ ++V+ + + ++ R Sbjct: 533 TN----RADFLVEQFKLHRRKGLVGKF----VSIYKVTVERVIHIAS------DNGRVCR 578 Query: 679 ALMGANMQR--QAVPTLRADKPLVGTGMERAVAVDSG 713 L+ + R Q + + + D+ L + VA++SG Sbjct: 579 PLIIIDKNRINQTIISNQMDECLKALNISEKVAIESG 615 >UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VXL3_NAEGR Length = 1069 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 140/342 (40%), Gaps = 72/342 (21%) Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 DL+E L +F + + +A++ + L D E+GL +E A Y Sbjct: 695 DLTEGTAFLTNRVFDKTE---MDSDYQAKEFEDLDYDGLPEVGLPLDEG----SIFANYY 747 Query: 1019 DELKHEF----EKKLEAKRRKITQGDDLAPGVLKIVK---VYLAVKRRIQPGDKMAGRHG 1071 D K +F K +++ + P K VK + + R GDK + RHG Sbjct: 748 DPEKQKFMPMKWKDVDSATVHSVKVIATDPSDYKKVKHASITFRLNRNPIIGDKFSSRHG 807 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 KGV+S + P EDMP+ + G DIV+NP PSRM IG ++E+ M++K Sbjct: 808 QKGVLSILWPQEDMPFTDGGIVPDIVINPHAFPSRMTIGMLVES---MSSK--------- 855 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 A L P ATP F ++ Sbjct: 856 -----------------------------------------AGALHGYFPDATP-FSFSE 873 Query: 1192 EA----EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 E E LK G +Y G G + + +G +Y +L H+V DK R Sbjct: 874 ENTAVDHFGEQLKKAGYNYHGNEVMYSGALGTTLKADIYMGVVYYQRLRHMVSDKYQCRV 933 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 G + +T QP+ G+ + GG R GEME AL AYGAA +++ Sbjct: 934 GGPTNAITHQPVKGRKKAGGVRMGEMERDALVAYGAAAVVKD 975 >UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RNV9_RICCO Length = 1203 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 123/301 (40%), Gaps = 77/301 (25%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + HG KGV+ + E+ P+ G DIV+NP PSR GQ+LE AA Sbjct: 953 GDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLE-----AAL 1007 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 G G +K Sbjct: 1008 GKGIACGGSMK------------------------------------------------Y 1019 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 ATP + EA +L + G G R+Y+GRTGE + +G + +L H+ +DK Sbjct: 1020 ATPFSTLSVEAITNQLHRAG-FSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDK 1078 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR- 1301 + R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E L SD Sbjct: 1079 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHI 1138 Query: 1302 TKMYKNIVDGNHQMEPG----------------------MPESFNVLLKEIRSLGINIEL 1339 + KN+ + + PG +P +L +E+ S+GI+++ Sbjct: 1139 CQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKF 1198 Query: 1340 E 1340 E Sbjct: 1199 E 1199 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 30/171 (17%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS---LGDL 484 ++K L+ NG+ + ++ D N+R E+ E + +V + R + + L GD Sbjct: 398 MVKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDR 457 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRIS 531 D + ++A ++ + F + S + + NPL + R+ Sbjct: 458 DVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRK-- 515 Query: 532 ALGPGGLTRERAGF-----EVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 TR + + R HP+H+GRVC + TP+G N GL+ +L+ Sbjct: 516 -------TRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLAT 559 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 9/126 (7%) Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 LG+P GD EL GQN VA GYN EDS++++ ++ F + Sbjct: 788 CLGKP---GDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 844 Query: 832 HIQEL-ACVSRDTKLGPEEITADIPNVGE-----AALSKLDESGIVYIGAEVTGGDILVG 885 HI+ A V L D N G+ + LD+ G +IGA + GDI++G Sbjct: 845 HIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIG 904 Query: 886 KVTPKG 891 + G Sbjct: 905 RCAESG 910 >UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia intestinalis RepID=A8B9W7_GIALA Length = 1293 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 51/248 (20%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 + KV + R Q GDK + RHG KG + + ED+P+ +G DI++NP +PSRM Sbjct: 1025 LAKVRVRSSRVPQLGDKFSSRHGQKGTVGMLLRHEDLPFTLDGITPDIIMNPHAIPSRMT 1084 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 IGQ++E+ +A+K LGA +VD + F+ Sbjct: 1085 IGQLMES---VASK----------------------------LGALSGHEVDGTAFN--- 1110 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 A P G+ + +I L + +G TGE + +G Sbjct: 1111 --------------APP---GSTDKQIAADLHARGYQKHNYEAMMNGMTGEMMTYRIFIG 1153 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 + +L H+V DK+ +R+TG +T+QP G++ +GG R GEME A A+GA L+ Sbjct: 1154 PTFYQRLKHMVLDKISSRNTGPIVTLTRQPNEGRSNYGGMRIGEMEKDAFIAHGATAILR 1213 Query: 1289 EMLTVKSD 1296 + L SD Sbjct: 1214 DRLLFSSD 1221 >UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=A8B827_GIALA Length = 1235 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 124/276 (44%), Gaps = 51/276 (18%) Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP--GDKMAGRHGNKGVISKIN 1080 H + + ++ R+ T+ + + I +V + ++ P GDK+A RHG KG++ Sbjct: 946 HASKAERKSSRQLQTRARTESSSLHFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRW 1005 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 DMP+ +G D+++NP PSRM +G ++E+ +A+K Sbjct: 1006 RQTDMPFTSSGIVPDLIINPHAFPSRMTVGMLIES---LASK------------------ 1044 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 +G VD S F + R A VF ++LLK Sbjct: 1045 ----------IGVHYADFVDSSPFQWSDERR-----------AIDVFG-------EQLLK 1076 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 G G +Y TG+ + +G +Y +L H+V DK R+ G +T+QP+ Sbjct: 1077 TGQFNRYGSEVMYSAITGDPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQPIK 1136 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 G+ + GG RFGEME AL A+GA +L+ L +SD Sbjct: 1137 GRKRGGGLRFGEMERDALLAHGAMASLRGRLCTESD 1172 >UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9FCT0_ORYSJ Length = 1185 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 99/234 (42%), Gaps = 54/234 (23%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + HG KGV+ + E+ P+ G DIV+NP P+R GQ+LE LG K Sbjct: 935 GDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALG---K 991 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 GI L +R P Sbjct: 992 GIA----------------------------------------------LGGTMRYATPF 1005 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 T FD I + L G + +GRTGE+ + +G + +L H+ +DK Sbjct: 1006 TTASFD-----VITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDK 1060 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 + R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L + SD Sbjct: 1061 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSD 1114 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 32/174 (18%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT- 486 ++K L+ GK + D+ D N+R+ GE+ + R + ER + + L DL++ Sbjct: 425 MVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQR-DLNSE 483 Query: 487 --LMPQD-MINAKPISAAVKEFFGSSQLSQFMDQN-------------NPLSEITHKRRI 530 L D ++A I+ + F + +N NPL I+ R+ Sbjct: 484 RELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRK- 542 Query: 531 SALGPGGLTRERAGF-----EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 TR+R + + R +P+++G++C + TP+G N GL+ +L+V A Sbjct: 543 --------TRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTA 588 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 10/105 (9%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP--------- 847 GQN VA G+N EDS++++ ++ F T H + + K GP Sbjct: 790 GQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYK-AEVENKGGPGGNKRLKMK 848 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 ++I + LD+ G+ Y+GA + GDI++GKV+ GE Sbjct: 849 DKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGE 893 >UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomatidae RepID=Q583H5_9TRYP Length = 1190 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 118/289 (40%), Gaps = 70/289 (24%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK RHG KG EDMP++ +G D+++NP +PSRM + ++ET +A K Sbjct: 947 GDKFCSRHGQKGTNGIQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLIET---LAGK 1003 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 ++ + EV Sbjct: 1004 --------------------------------------VACYKGGEVY------------ 1013 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 ATP E K L +L L G RLY+G TG + + G Y +L HL DK Sbjct: 1014 ATPFCSVVVEDFGKALTQL-KLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDK 1072 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML----------- 1291 +HAR G + +QP G+A GG RFGEME + +YGA+ L+E L Sbjct: 1073 IHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHV 1132 Query: 1292 -----TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 T+ + D + + + +H + MP + +L +E+ S+ I Sbjct: 1133 CNMCGTICAADTDQNLYKCQGCDNDSHISQVLMPYACKLLFQELMSMAI 1181 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 +L G N VA ++GYN EDSI++S V+ F ++ + + G E Sbjct: 788 DLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREGREMF-- 845 Query: 853 DIP-----NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +IP +V A +KLD G++ G V GGDI+VGK P +T Sbjct: 846 EIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKT 891 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 19/151 (12%) Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE--------RLSLGDLDTLMPQDMINA 495 D D LG++RI G + Q LV+V R + + R + ++ +I Sbjct: 401 DRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVVSFGRILHNRLITD 460 Query: 496 KPISAAVKEFFG-------SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 FG + +SQ +++ S +++ RRI ++ R Sbjct: 461 GMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQ----NPISASSKATRPR 516 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 ++H T +G +CP+ETPEG +IGL+ +L++ Sbjct: 517 NLHCTQWGYICPVETPEGGSIGLLKNLALMC 547 >UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenophorea RepID=Q23G41_TETTH Length = 1226 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 114/274 (41%), Gaps = 58/274 (21%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + IVKV L R Q GDK A RHG KG ED+PY+ G ++V+NP +PSR Sbjct: 958 MYIVKVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGEDLPYNIEGIIAELVINPHCIPSR 1017 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IG ++E G+ K++++ Sbjct: 1018 MTIGHMIE--------GLNSKLSSL----------------------------------- 1034 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 KG+ F G K +I L G LY+ TG + + Sbjct: 1035 -----------KGIWGDATPFSGIKLQDIASELHTYGYQRYGNEVLYNPYTGMRLSTQIY 1083 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G + +L HLVDDKM++RS G + +QP G+++ GG RFGEME + A+G + Sbjct: 1084 YGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGGLRFGEMERDCIIAHGTSNF 1143 Query: 1287 LQEMLTVKSDD----VNGRTKMYKNIVDGNHQME 1316 L+E SD V R ++ NH+ + Sbjct: 1144 LKERTFGVSDQFRTHVCSRCGLFAKADVTNHKYD 1177 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 26/177 (14%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLD 485 +++KL++ GK + DD DH G +R+ G + F+ L ++ K+ L + D+ Sbjct: 398 MIQKLLNAALGKTQEDDRDHYGKKRLDMAGALISQLFKERLRIFQKNAKKNLQQKINDIS 457 Query: 486 TLMPQ------DMINAKPISAAVKEFFGSSQLSQFMD--------------QNNPLSEIT 525 + D+ + K IS ++ + Q D + + ++ Sbjct: 458 RDAQKSLNVIVDIFDHKLISDHIRLALATGNWGQTADGEVVKTGVAQVLKRDTSLFATMS 517 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 H RR++A R R +H THYG +CP ETPEG IG++ +LS+ AQ + Sbjct: 518 HMRRVNAPMKSAAKLARP----RQLHNTHYGLICPAETPEGQKIGMVKNLSLLAQVS 570 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 14/112 (12%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG------ 846 ++ +G N VA + GYN EDSI++++ + F +I + + +G Sbjct: 816 DIPIGSNAVVAIACFTGYNQEDSIIINQSAIDRGLFRSILYRTYKTTEKKEHMGLNPVIE 875 Query: 847 ----PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT--PKGE 892 P+E IP + KLD GI+ G +VTG D+L+GKV PK E Sbjct: 876 HIRFPDEKKTIIP--ASYSFLKLDYDGIIPPGTQVTGEDVLIGKVVELPKTE 925 >UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S5S8_TRIAD Length = 1016 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 122/297 (41%), Gaps = 70/297 (23%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 ++K L RR + GDK + RHG KGV I EDMP+ D ++NP G PSRM Sbjct: 769 LIKTLLRSSRRPEIGDKFSSRHGQKGVCGLIVNQEDMPF------TDQIMNPHGFPSRMT 822 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 V KL E I L Sbjct: 823 -----------------------------VGKLMEVIGGKASL----------------- 836 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 L R G FDG K ++ + L + +G+ L G TGE + G Sbjct: 837 ---LDGKFRYGT-----AFDGDKLEDLCQTLIDYNYSYAGKDYLTSGITGEGLSAYIFFG 888 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 +Y +L H+V DKMHAR+ G +++T+QP G+++ GG R GEME L AYG + L Sbjct: 889 PVYYQRLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSMLLV 948 Query: 1289 EMLTVKSD----DVNGR------TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 E L + SD DV +K H +P + +L +E++S+ I Sbjct: 949 ERLMISSDAFEVDVCNNCGLLAYSKWCHYCHSSCHVSSLQIPYACKLLFQELQSMNI 1005 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 17/142 (11%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFPIQS---YSGNSELQYV 71 P L V L+ +DS+ FI + + + +VF ++ Y GN +++ Sbjct: 36 PAFLKVKGLVKQHIDSYNYFINCEIKKIVNANNKVTTDADTVFYLKYLNVYVGNPDIEE- 94 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 S+ + +P + EC++R +TYSAP+ V + Y R A + I+ Q++ +G +P+M Sbjct: 95 SFNVTKPTYP-HECRLRDLTYSAPIVVDIE---YTRGA-----QRIRRQKLPIGRVPVML 145 Query: 132 DNGTFVINGTERVIVSQLHRSP 153 + V+NG V +++ + P Sbjct: 146 RSSICVLNGKSPVELAKYNECP 167 >UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious spleen and kidney necrosis virus RepID=Q5YF54_ISKNV Length = 1053 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 126/305 (41%), Gaps = 67/305 (21%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 K VK+ L R + GDK A KG + DMP+ +G D+V+NP PSR Sbjct: 806 CKCVKIKLRKIRIPEMGDKFASFTAQKGTCGMMYDQWDMPFTADGVVPDLVINPHAFPSR 865 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M + +L+ + A G K YD A DL Sbjct: 866 MTVHYLLQMCFELGAVAGGGK--------------------GYDATAFNSDGTDL----- 900 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 +K L +LG + Q+ +Y GRTG +FE V Sbjct: 901 ----------------------------LKTLEELG---YAKQV-MYCGRTGRRFESLVF 928 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 + KL HLV +K+HAR+TG +T+QP+ G+++ GG + GEME W ++GAA Sbjct: 929 MAPCPYQKLKHLVANKVHARTTGPVDPLTRQPVAGRSRDGGIKIGEMEQWCKISHGAAAA 988 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQM----------EPGMPESFNVLLKEIRSLGIN 1336 L E +T SD +++ ++++ MP + + +++ S+GI Sbjct: 989 LHESMTTMSDPYTVPVCSVCHVMTDSYKVCRHCRSVSVQSYAMPYTSKLFFQQLASIGIK 1048 Query: 1337 IELED 1341 + D Sbjct: 1049 TCIMD 1053 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 135/584 (23%), Positives = 215/584 (36%), Gaps = 119/584 (20%) Query: 440 GEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G V D D+L +R+ + G + N F+ + V+R +++ +G D +NA Sbjct: 309 GAVHDKDNLRWKRVDTSGALILFLFRNLFKQWVCTVKRVMEKSCVVGVPDLQGKSGSVNA 368 Query: 496 --------------------KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS-ALG 534 + S K + +SQ M N + I++ RR++ A+G Sbjct: 369 ITNVITNVLHLAFATGNWLVRKNSGTSKNTYTPRGVSQLMCVQNYGARISNLRRMTHAVG 428 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 G +VR +H +H G +CP ETPEG +G + L++ A V Sbjct: 429 FKG-----KNIKVRQLHNSHNGYICPYETPEGDRVGNVVQLALSA-------------TV 470 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH---FVEDLVTCRSKGESSLFSRDQVD 651 T V IH L + Q N + G +V D + C L+ D Sbjct: 471 TVPVCPRNIHTLMMSALRLFADPQGNQPVLLNGEIVAWVRDRMLCGMAMMHVLW-----D 525 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ------RQAVPTLRAD---KPLVGT 702 Y V+ V G + H RA + ++ R P+L +P + Sbjct: 526 YPHVTV--VFRHGYGV-----HCVQRRAAVSCDLSLHRGQYRMVCPSLVQGLLVRPF-PS 577 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP--------GEAGIDIYNLT 754 ER V++DS G+V DA VI P G+ + + L Sbjct: 578 PTERVVSMDSMRAEFMDLPGIVVLTDAMSAVIPFYNHTQSPRNAYQSNMGKQAVGLPCLN 637 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 +R + + P V P+ R + D S D + G VA + ++GYN ED Sbjct: 638 YMSRWDVTLDVLMYPQV----PLSRSKAM-DALSFD--TMPHGACPIVAVLTFDGYNQED 690 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP---NVGEAALSKLDESGI- 870 SI+++ VQ F + + L + K E +P L + GI Sbjct: 691 SIILNRSSVQRGMFVSTTYKTLCECEKHVKRCEFERIMCVPVDKRRPGLVYDYLGDDGIF 750 Query: 871 ---VYIGAEVTGGDILVGKVT-----PKG---ETQLTPEEKLL---RAIF----GEKASD 912 + G VT G ++VGK++ P+G + P E+ + +F G K Sbjct: 751 DPALARGMFVTAGVVVVGKMSFDQSRPEGVCCSLAVKPHEEGYFDDKLVFNMADGCKCVK 810 Query: 913 VKDSSLRVP------------NGVSGTVIDV--QVFTRDGVEKD 942 +K +R+P G G + D FT DGV D Sbjct: 811 IKLRKIRIPEMGDKFASFTAQKGTCGMMYDQWDMPFTADGVVPD 854 >UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RIB2_ARCPR Length = 511 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 87/149 (58%), Gaps = 13/149 (8%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD-------LDTLMPQDMINA 495 DD DH N+R++ G++ E FRV L+R+ + VK +L + T + D++ Sbjct: 344 DDKDHYANKRLKLAGDLIEEIFRVALLRLIKDVKYQLERAKARGRPMKMTTAVRADVLTD 403 Query: 496 KPIS--AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 + + A G + +SQ +D++N +S ++H RR+ + L+R + FE RD+HPT Sbjct: 404 RIMHPMATGNWVGGRTGVSQLIDRHNYMSILSHLRRVVS----PLSRSQPHFEARDLHPT 459 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTN 582 +GR+CP ETPEGPN GL+ + + YA+ + Sbjct: 460 QWGRLCPNETPEGPNCGLVKNFAQYAEVS 488 >UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=Eukaryota RepID=Q2I5U5_BATDE Length = 1202 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 95/224 (42%), Gaps = 54/224 (24%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 K VKV + R GDK A RHG KG + EDMP+ +G D+++NP +PSR Sbjct: 1033 FKFVKVRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMPFTADGITPDLIINPHAIPSR 1092 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IG ++E L + GD+ +A Sbjct: 1093 MTIGHLVECLLSKVSTFTGDEGDA------------------------------------ 1116 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 TP D EA I + L+ G LY+G TG + V Sbjct: 1117 -----------------TPFTDVTVEA-ISQALQGYGYQRRGFEVLYNGHTGRKLNAQVY 1158 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 G Y +L H+VDDK+H+R+ G ++T+QP+ G+++ GG RF Sbjct: 1159 TGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 1202 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 25/112 (22%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVV---------------QEDRFTTIHIQELA 837 +L G N VA ++GYN EDS+++++ + QE + I + L Sbjct: 888 DLPAGINAVVAIACYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYMDQEKKVGMISTETLE 947 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 SRDT L + KL++ G++ G V+G DI++GK P Sbjct: 948 KPSRDTTL----------RLKHGTYEKLEDDGLIAPGVRVSGEDIIIGKTVP 989 >UniRef50_UPI0001C41F1A DNA-directed RNA polymerase subunit B'''' RpoB2 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F1A Length = 520 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 97/171 (56%), Gaps = 14/171 (8%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLG 482 + ++ + L+ + G+ E D DH N+R+R G++ E+ FRV + R + RL SL Sbjct: 336 LAEMTEMLLQVIEGQREPHDKDHYTNKRLRVSGDLTEDLFRVAFSSLTRDMSYRLERSLS 395 Query: 483 DLDTLMPQDMINAKPISAAVKEFF-------GSSQLSQFMDQNNPLSEITHKRRISALGP 535 L + + + ++ +K G + +SQ +D+ + ++ ++H RR+ + P Sbjct: 396 RGKELSIKQAVRSDVLTENIKHAIATGNWVGGRAGVSQLLDRVSYMATLSHLRRV--VSP 453 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 LTR + FE RD+HPT +G++CP ETPEGPN GL+ +L++ + +E GF Sbjct: 454 --LTRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLALMCKISE-GF 501 >UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AXE5_BABBO Length = 971 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 48/246 (19%) Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 K++L I GDK+ GRHGNKG ISKI I + PY +I+ +P+G SRMN+G Sbjct: 732 KLFLVSINNINVGDKLCGRHGNKGTISKIIEIPESPYTSEDKLPNIITSPIGAASRMNVG 791 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 Q +E ++G D N +K + +D+ + + + S++ Sbjct: 792 QFIEGYIGNTC----DIDNVRIKSPINLH------------SSDMYSSLYVKSVSNKINN 835 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 R + K A VF D +TG + + + Sbjct: 836 RYVK--LKSSQNAVSVFR-------------------------DFKTGYKLKGFTHHVIL 868 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y KL H K R + S LV Q + G+++ Q+FGEMEVW+LEA+GA+Y L+EM Sbjct: 869 YFFKLMHTSKSKFRYRCSSS-KLV--QYVHGESK--EQKFGEMEVWSLEAHGASYNLKEM 923 Query: 1291 LTVKSD 1296 +K++ Sbjct: 924 SLLKTN 929 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 92/419 (21%), Positives = 175/419 (41%), Gaps = 27/419 (6%) Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 S DII V+ K I+ + K + D N+ + S+ + N + L ++ Sbjct: 228 SYADIISVINKFINAVHKKITFINSDSFINKNVNSICDNMFNLIKKSLSTYHFTDPKKHI 287 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 L LD+ I P+ +E F + + +Q N LS + +K +++ G + Sbjct: 288 LHVLDSKTKFSNI---PL---FRENFLLNPSLHYTNQLNLLSCVQNKFKLNIFGYST-SS 340 Query: 541 ERAGFEV----RDVHPTHYGRVCPIETPEGPNIGLINSLSVYA--QTNEYGFLETPYRKV 594 F + R V + + + T +G G++++++ Q + + +K Sbjct: 341 TSTTFAIPKYLRQVQYFYLNFINILYTVDGEKCGILSTITTNTIEQNKKLKTVIINKQKF 400 Query: 595 TDGVVTDEIH-YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ-VDY 652 + + D+ L++I NY N+ L + +F + V GE + D+ Sbjct: 401 LNNIYLDQFSKNLNSITINNY-----NNLLKKSYNFKINHVEVIENGEFKIVKLDKHSSN 455 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 ++ + ++ LIPFL ++D R+LMG+ M QAVP + ++ V T + + S Sbjct: 456 SSLTFYNIFNITELLIPFLLNNDMCRSLMGSKMHTQAVPLIHSNPQYVYTKYNQITNLIS 515 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 ++ G++ +I I ++++ Y Y L+ Y + N P V Sbjct: 516 NKCIISSTSGIIVLSTNYKITI-LDDNNRYVS------YYLSPYNIHDYNYYTRYRPVVW 568 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 GE G +LA E LG N V + + GY ED+I++++ V D T++ Sbjct: 569 EGEKSNIGTILAIPSDAANCEFTLGFNNFVNYSFYYGYEHEDAIVLNKNVAYNDMLTSL 627 >UniRef50_D2EG08 RNA polymerase Rpb2 domain 6 n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG08_9EURY Length = 600 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 138/304 (45%), Gaps = 72/304 (23%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K V + + R ++ GD R G KGV+ + EDMP+ +G D++ +P +PSRM Sbjct: 343 KYVSLKIRQDRPVEIGDIFGPRSGQKGVVGMLLNQEDMPFTYSGIVPDLIFSPYSIPSRM 402 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 ++ +LE IG K+ A LG + VD ++F+ E Sbjct: 403 SMSYLLEL--------IGGKVGA--------------------LGG---RHVDGTSFTGE 431 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 E+LR+ EL+K G +G +Y+G TGE+ + + V Sbjct: 432 T----EESLRQ------------------ELMKYG-FRENGVETMYNGITGEEMKVRIFV 468 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G M ++L H V+ K+ R+ G L+ +QP GK++ GG R GEME AYG A L Sbjct: 469 GDMTYIRLKHFVEYKIQWRARGPIQLLNRQPTEGKSKRGGLRLGEMEKDCFVAYGTALAL 528 Query: 1288 QEMLTVKSDDV--------------NGRTKMYKNIVDG-NHQME-PGMPESFNVLLKEIR 1331 +E SD V N + K +DG + Q++ + SF +LL E++ Sbjct: 529 KERF--DSDKVTIPVCSKCGMVAVYNVKKKTGYCPIDGEDAQIKLIEVSASFKILLDELK 586 Query: 1332 SLGI 1335 S+GI Sbjct: 587 SVGI 590 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 13/102 (12%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDR-----FTTIHIQELACVSRDTKLGPEEIT 851 GQN+ VA + + GYN +D+I++++ V+ F +++L V + L IT Sbjct: 201 GQNIVVAVLSYLGYNMDDAIIINKSSVERGLLRAMFFRPYKVEDLKYVGGQSDL----IT 256 Query: 852 ADIPNVG----EAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 +V E + LDE I I + V GD+L+G+++P Sbjct: 257 IPDKDVAGYRSEDSYKYLDEDAIAAINSHVNDGDVLIGRISP 298 >UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S72_GUITH Length = 1109 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 51/251 (20%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V + L KR+ GDK A RHG KG++S +E++P+ E G DI+ NP G PSRM I Sbjct: 851 VMIRLKSKRKPIEGDKFASRHGQKGILSFKYEVENLPFSETGIIPDILFNPHGFPSRMTI 910 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 G ++E+ G + GA Sbjct: 911 GMVIESLSGKS-------------------------------GA---------------- 923 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 L N P T + K E L+ G+ Y G G + V VG Sbjct: 924 --LNGNFNDSSPF-TSFLNCNKSYIFGEFLRENGFEFYGKEMFYSGFVGLPLQTDVFVGV 980 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 ++ +L H++ DK + + + +T+QP+ G+ G R GEME AL +G + L E Sbjct: 981 IHYQRLKHMILDKFQVSNNSARNHLTRQPIKGRKLGGSIRLGEMERDALLGHGCIFLLHE 1040 Query: 1290 MLTVKSDDVNG 1300 + KS D++G Sbjct: 1041 KMQ-KSSDLHG 1050 >UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative n=1 Tax=Schistosoma mansoni RepID=C4Q6P1_SCHMA Length = 1155 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 108/255 (42%), Gaps = 53/255 (20%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGV 1103 G + L + R+ GDK + RHG KG+ S + E+MP+ NG D++ NP G Sbjct: 855 GSWSCATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGF 914 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE-FIQRAYDLGADVRQKVDLS 1162 P+RM +G ++E G +A G+ I+A Q E + E + Q D G + Sbjct: 915 PTRMTMGMMIEFLAGKSAALTGNLIDATPFQWSEDSPPYEDYCQILTDCG--------FN 966 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + E +M G TG Q E Sbjct: 967 HWGTETMM-------------------------------------------SGSTGRQLE 983 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + VG +Y +L H+V DK R+ G + + +QP+ G+ GG R GEME L ++G Sbjct: 984 AQIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSHG 1043 Query: 1283 AAYTLQEMLTVKSDD 1297 ++LQ+ L + D Sbjct: 1044 LVFSLQDRLVDSNCD 1058 >UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella erythropus RepID=Q1L6V8_9TRAC Length = 593 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/307 (25%), Positives = 123/307 (40%), Gaps = 71/307 (23%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V V L R Q GDK + HG KGV+ + ED+ + + G D+++NP PSR + Sbjct: 341 VNVRLRESRCPQVGDKFSSMHGQKGVVGMMLSQEDLLFTQQGIVPDVIINPHAFPSRQTL 400 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 Q+LE+ +G K AM Sbjct: 401 AQMLESLVG--------KTAAM-------------------------------------- 414 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 G+ + F + ++ + L GQ R+Y G TG T G Sbjct: 415 ---------GLCLGDTPFTHLRAEQLAQKLAKRGFQKWGQDRVYSGCTGRMTGAMATFGL 465 Query: 1230 MYMLKLNHLVDDKMHARS-TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 + +LNHL DKM R G +T QP+ + + GG +FGEME L A+GA+ T+Q Sbjct: 466 TFYQRLNHLSRDKMKCRGGNGPVHPLTHQPVKDRRRQGGTKFGEMERDCLVAHGASATVQ 525 Query: 1289 EMLTVKSD-DVNGRTKMYKNIVDGNHQMEPG--------------MPESFNVLLKEIRSL 1333 E L + SD + + N Q +PG MP + +L E++++ Sbjct: 526 ERLFLVSDKSLVHVCANCCRLASFNSQQQPGCLFCKRXQRPVAVEMPYACKLLRMELQAM 585 Query: 1334 GINIELE 1340 G+++ Z Sbjct: 586 GVDMRFZ 592 >UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NYQ6_COPC7 Length = 1127 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 108/258 (41%), Gaps = 66/258 (25%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G D L+ V V L + R GDK + RHG KGV S+ P DMP+ E+G D+++ Sbjct: 814 GSDAGDSELQKVHVTLRIPRAPVIGDKFSSRHGQKGVCSQKWPAIDMPFSESGIQPDVII 873 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP PSRM IG ++E+ G K AM Q+ + Sbjct: 874 NPHAFPSRMTIGMLVESMAG--------KAGAMHGLAQDATPFK---------------- 909 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 F++E D A + K+LL G G +Y G TG Sbjct: 910 -----FTEE--------------------DTAIDYFGKQLLAAG-YNYYGNEPMYSGITG 943 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 ++F + G +Y +L H+V DK G+ + GG RFGEME AL Sbjct: 944 QEFAADIYFGVVYYQRLRHMVLDKFQ----------------GRKRAGGIRFGEMERDAL 987 Query: 1279 EAYGAAYTLQEMLTVKSD 1296 A+G ++ LQ+ L SD Sbjct: 988 IAHGTSFLLQDRLMNCSD 1005 >UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BKT9_9CRYP Length = 1129 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 98/240 (40%), Gaps = 50/240 (20%) Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 +RR GDK A RHG KGV S + D+P+ + G +I+ NP G PSRM IG ILE+ Sbjct: 875 RRRPLVGDKFASRHGQKGVFSYLYSSIDLPFTDLGMNPEIIFNPHGFPSRMTIGVILESM 934 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 +G KI A+ D F D R +N Sbjct: 935 IG--------KIGAL------------------D-----------GVFHDTTPFRFGQN- 956 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 A E L+ G Y G +GE F V +G + +L Sbjct: 957 ------------RAAIYHFGEKLRKSGFQFYGNEIFYSGYSGEPFSIDVFLGIVNYQRLR 1004 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK + G + +T+QP+ GK G RFGEME A+ G + L + L SD Sbjct: 1005 HMVLDKYQISNQGPKNSLTRQPIKGKKIGGSIRFGEMERDAILGQGCVFLLHDRLQTSSD 1064 >UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 86 RepID=Q4A245_EHV86 Length = 1156 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 79/312 (25%), Positives = 121/312 (38%), Gaps = 75/312 (24%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 VKV R GDK + RHG KGV P D P +G DI++NP +PSRM I Sbjct: 898 VKVRTRAIRIPMVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPDIIINPHAIPSRMTI 957 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GM + + K+ + Q+ Sbjct: 958 --------GMLMEMVLSKVACYEGETQD-------------------------------- 977 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 G P F G I + L+ + G LY+G +GE E + + Sbjct: 978 ---------GTP-----FTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLESMIFIAP 1023 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 Y +L H+V DK HAR+ G+ L+T+ P G+++ GG R GEME ++ ++GA ++ Sbjct: 1024 CYYQRLKHMVVDKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKD 1083 Query: 1290 MLTVKSD---------------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 L +SD V ++ G H +P S +L++ Sbjct: 1084 RLFEQSDIFECVACEKCGHFAREGTDDTSVKNSGMWCEHCKTGKHCTHTQLPYSMKLLIQ 1143 Query: 1329 EIRSLGINIELE 1340 E+ + I+ LE Sbjct: 1144 ELAAAHISATLE 1155 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE--EITADIPNVG- 858 VA M ++G+N +DS+L+++ + FT+ + + T E E +IP Sbjct: 758 VAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEEKGTGADIERFENPKNIPGCSG 817 Query: 859 --EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 EA SK+D+ G+ IG GD+L+GKV Q P+E +R Sbjct: 818 MKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKEGEVR 864 >UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax=Marseillevirus RepID=D2XA39_9VIRU Length = 1277 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 28/312 (8%) Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG---TPVDIVLNP 1100 P ++V +A R + GDK H KGV S +DMP+ + T D ++NP Sbjct: 969 PNGYLCIRVAVASTRIPETGDKATSFHSQKGVFSLFVEEQDMPFTSDAFSATHPDFLINP 1028 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 L PSRM IGQ E++ G K+ A ++ + E+ L A ++++V Sbjct: 1029 LAFPSRMTIGQPKESNTG--------KMTASAYRELPDSHRFEYENLYRTLSARIQKEVP 1080 Query: 1161 LSTFSDEEVMRLAENLR--KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + + +E+ + + G F + EL + G P G+ DGRTG Sbjct: 1081 EAEEAAKELEKRNPKTKGYSGSYTDCTPFTSNYQVVEDELKRRGYAP-GGKEFFIDGRTG 1139 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 ++ E + VG + +L H+V DK+HAR+TG +T+QP G+++ GG + G ME +L Sbjct: 1140 KKMEVSLFVGLVPYNRLKHMVIDKIHARATGKIQSLTRQPTEGRSRNGGLKTGIMERDSL 1199 Query: 1279 EAYGAAYTLQEMLTVKSDD-------------VNGRTKMYKNIVDG-NHQMEPGMPESFN 1324 GA + L++ L + D V + K Y G ++ ++ +P + Sbjct: 1200 VGNGAVFCLRDRLFLSCDKFEVWVCESCGLIAVESKEKKYCRACHGKSNVVKLAVPYATK 1259 Query: 1325 VLLKEIRSLGIN 1336 + +E+ ++GI Sbjct: 1260 LSFQELMAMGIT 1271 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 22/167 (13%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTL 487 ++ + + ++ G + +D DH N+R+ V + N F + + +K+ G T Sbjct: 361 MLARALKVKTGDRQPEDRDHYTNKRVDCVDSLLNNLFYSMWNQTTKFIKDSCK-GKERTA 419 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQF--------MDQN----NPLSEITHKRRI-SALG 534 P I +K I+ ++ + S F QN N ++ ++ R++ +A+G Sbjct: 420 DPLKPIRSKSITKKIRTAMSTGNWSSFNTKSKKQGTSQNYERYNIVASCSNLRKVHAAIG 479 Query: 535 P-GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN-IGLINSLSVYA 579 G +T+ R VH + YG +CP +TPE + GL L++ A Sbjct: 480 TEGNMTKPRR------VHESSYGFICPPDTPESKDKTGLSKVLALSA 520 >UniRef50_P15352 DNA-directed RNA polymerase subunit B'' n=25 Tax=Euryarchaeota RepID=RPOB2_HALSA Length = 523 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 86/149 (57%), Gaps = 15/149 (10%) Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL-------DTLMPQ 490 G+ E DD DH N+R++ G++ ++ FR L ++ R VK +L ++ +T++ Sbjct: 338 GRREADDKDHYANKRLKVSGDLMKDLFRTALNKLARDVKYQLERANMRNRELTVNTVVRS 397 Query: 491 DMINAK---PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 D++ + PI+ G S +SQ +D+ + + ++H RR+ + L+R + FE Sbjct: 398 DVLTERLEHPIATG-NWVGGRSGVSQLVDRTDFMGVLSHLRRLRS----PLSRSQPHFEA 452 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLS 576 RD+H T +GR+CP ETPEGPN GL+ + + Sbjct: 453 RDLHATQWGRICPSETPEGPNCGLVKNFA 481 >UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB0F Length = 1114 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 129/303 (42%), Gaps = 64/303 (21%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V + V R GDK A R G KG+ S++ P ED+P+ ++G D+V NP G PSRM I Sbjct: 861 VCITFRVPRNPVVGDKFASRAGQKGICSQMWPCEDLPFTDSGLVPDVVFNPHGFPSRMTI 920 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV-DLSTFSDEE 1168 ++E MA K A V KV D + F E Sbjct: 921 AMMIEL---MAGKS-----------------------------ASVHGKVHDATPFIFSE 948 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 D + +LL+ G ++Y G G + + G Sbjct: 949 -------------------DNSAIDYFGKLLEAAGYNYYGTEKMYSGVDGREMNAAIFFG 989 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 +Y +L H+V DK RSTG +TQQP+ G+ + GG RFGEME +L ++GA+ L Sbjct: 990 IVYYQRLRHMVLDKWQVRSTGPVDTLTQQPIKGRRRGGGVRFGEMERDSLISHGASALLH 1049 Query: 1289 EMLTVKSDDVNGRTKMYKN------------IVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 + L SD R+ +++ DG + +P F LL ++ ++ I+ Sbjct: 1050 DRLFECSDKYKARSALFRCPKTGVKKEVCRLCSDGGNVKTIEIPYIFRYLLIQLAAVNIH 1109 Query: 1337 IEL 1339 +++ Sbjct: 1110 LKV 1112 >UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LW27_BIGNA Length = 1159 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 54/255 (21%) Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 L G KI+KV + R GDK + HG KG+I +P D+++NP Sbjct: 898 LDEGGYKIIKVRIRSIREPVIGDKFSSLHGQKGIIGYSYRQSLLPTTATSVTPDLIMNPH 957 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 +PSRM IG ++E + + G LG D Sbjct: 958 AIPSRMTIGHMIEMLMSKVSSHSGK------------------------LG-------DA 986 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 + FS+ + ++ I L K G + G ++ G G+ Sbjct: 987 TAFSEGNIGKI----------------------IGHLSKFG-IHHFGLEKMISGFNGDIL 1023 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 ++ + VG +Y +L H+V DK +RS G Y ++T+QP+ GK + GG RFGEME + ++ Sbjct: 1024 QKSILVGPIYYQRLKHMVVDKFFSRSRGPYEILTRQPVEGKTREGGLRFGEMERDCVLSH 1083 Query: 1282 GAAYTLQEMLTVKSD 1296 G++ L+E L +SD Sbjct: 1084 GSSLFLKERLMDESD 1098 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 19/175 (10%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----- 479 I + +LI+ N + DD D N+R+ G + + F + R + VK +L Sbjct: 359 ICYMAHRLINTLNEIEQPDDKDSYKNKRVDISGHLFSSLFNNLIKRSIKDVKNQLLKKVK 418 Query: 480 --SLGDLDTLMPQDMI-NAKPISAAVKEFFGSSQL------SQFMDQNNPLSEITHKRRI 530 +L+ L +++ N S A + L SQ +++ + LS I+H R+ Sbjct: 419 KSDATELEELFSSNILTNGFRYSLATGNWIIDGMLDYKTGVSQVLNRMSYLSMISHLSRL 478 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ-TNEY 584 ++ T ++R VH +++G VCP+ETPEG G++ + + A TN + Sbjct: 479 NS----SYTSNGKILDIRRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVTNSH 529 >UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrella patens subsp. patens RepID=A9RIU1_PHYPA Length = 472 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 127/302 (42%), Gaps = 52/302 (17%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 KIV+V + + R G K RH KG+I I ED+ + ++ D+++NP +PSRM Sbjct: 212 KIVRVRILLYRFPIVGHKFTSRHSQKGIIGAILSQEDLSFTKDEIAPDLIINPHVIPSRM 271 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +G +LE + M + D NA K RE S+ D Sbjct: 272 TMGHLLE--MVMYKIYVLDSNNARDPMLSSKPKSRE------------------SSCIDA 311 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 V A + EA+I +L K ++Y G T E V Sbjct: 312 TVFNRAHR--------------SFEADIAKLCKE---------KMYCGATRLPIEAIVAT 348 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y L H DK H+ S G +T+QP+ G+++ GG RFGEME L A+G A L Sbjct: 349 GICYYHVLRHQARDKAHSISKGVIQSLTKQPVEGRSRKGGLRFGEMEKDYLIAHGVASML 408 Query: 1288 QEMLTVKSD--------DVNGRTKMYKNI-VDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 E L SD D + +I +G + E +P SF +L +E+ I + Sbjct: 409 FEKLKNTSDLYEIWIYHDCSMICSSSPSINCNGRNTKEHRLPYSFKLLAQELSIANIRVG 468 Query: 1339 LE 1340 L+ Sbjct: 469 LK 470 >UniRef50_O27123 DNA-directed RNA polymerase subunit B'' n=19 Tax=Euryarchaeota RepID=RPOB2_METTH Length = 519 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLG 482 + ++ + L+ + +G+ D DH N+R+R G++ E+ RV + R + +L SL Sbjct: 339 LAEMTEMLLQVISGERRPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMSYQLERSLA 398 Query: 483 -----DLDTLMPQDMI--NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 + + D++ N K A G + +SQ +D+ + + ++H RR+ + P Sbjct: 399 RGKEPSVKQAVRSDVLTENLKHAIATGNWVGGRAGVSQLLDRTSYMGTLSHMRRV--VSP 456 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 L+R + FE RD+HPT +G++CP ETPEGPN GL+ +L++ A+ +E Sbjct: 457 --LSRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLALLAKISE 502 >UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide n=71 Tax=root RepID=RPO2_VARV Length = 1164 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 101/410 (24%), Positives = 165/410 (40%), Gaps = 73/410 (17%) Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG---VEKDKRALEIEEMQLKQA 956 K+ FG+ + + S + N G +I Q R G V K +EI Sbjct: 732 KIAANCFGQHVT-IALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVEIPLENFNNK 790 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE-QLA 1015 ++D S LE+ R+ A L +G A + R LE D + NQ+ ++ Sbjct: 791 ERDRSNAYSKLESNGLVRLNAFLESGDAMARNIS----SRTLE---DDFARDNQISFDVS 843 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 E+Y ++ ++ ++E R ++ D + V+V +RR GDK R KG Sbjct: 844 EKYTDM---YKSRVE--RVQVELTDKVK------VRVLTMKERRPILGDKFTTRTSQKGT 892 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA-------KGIGDKI 1128 ++ I ++PYDENG D+++N + SR I ++E L A KG + Sbjct: 893 VAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGENRPV 952 Query: 1129 NAMLKQQQEVAKLREFIQRAYD-LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 + + +F ++ Y+ L + +K Sbjct: 953 CFPSSNETSIDTYMQFAKQCYEHLNPKLTEK----------------------------- 983 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 +L D +I LYD T + + V G +Y L+L HL DK R Sbjct: 984 ------------ELSDKIFCEKI-LYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRC 1030 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 G + + +Q G+ + GG +FGEME L A+GAA T+ E+L +D Sbjct: 1031 RGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEED 1080 >UniRef50_UPI0001742D24 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742D24 Length = 107 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 10/97 (10%) Query: 67 ELQYVSYRLG---EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +L+Y+ Y + EP+ D EC+ RG TYS L+V+L+L +I+E V+ Sbjct: 2 KLEYLWYEIHDNDEPLNDELECKKRGKTYSGQLKVRLKLT-------NKRTGEIQETLVH 54 Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD 160 G+IPLMTD TF++NG ERV++SQLHRSPG+ F+ + Sbjct: 55 FGDIPLMTDKATFIVNGAERVVISQLHRSPGITFNKE 91 >UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT n=1 Tax=Hydra magnipapillata RepID=UPI0001924CDE Length = 1117 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 54/229 (23%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK RHG KG I DMP+ + G DI++NP +PSRM+I Q+ E G Sbjct: 862 GDKFCSRHGQKGTIGISLRGIDMPFTKWGIRPDIIVNPNAIPSRMSIAQLCECLFG---- 917 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 K+ A+ KGM + Sbjct: 918 ----KVGAL----------------------------------------------KGMNM 927 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 F+ +K++L+ + LY+G G+ + + +G Y +L H+V DK Sbjct: 928 DGTAFEDYDIDAMKDMLESLGYQRECEEYLYNGMLGKMIKHMIFIGPTYYQRLRHMVQDK 987 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +HAR G +++T+Q G+++ GG R GEME A+ +G A L+E + Sbjct: 988 IHARGRGPVTILTRQAPEGRSREGGLRLGEMERDAVITHGIAKFLKERM 1036 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE-LACVSRDTKL-GPEEIT 851 L G N VA ++GYN EDSI+ + +Q F ++ + + ++ ++++ + G ++ Sbjct: 706 LPPGSNAVVAIACYSGYNQEDSIVFNMTSLQRGLFRSMSLYKYISSITKNQETSGNDKFM 765 Query: 852 ADIPN----VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 P+ KL+E G + ++T GD++ GKVTP +T T Sbjct: 766 KPPPDKMAGTKNGNYDKLNEHGYIPEETQITKGDVIFGKVTPINDTTNT 814 >UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae AF16 RepID=A8WJV6_CAEBR Length = 1160 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 112/267 (41%), Gaps = 58/267 (21%) Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 A+R +T +D A + KV L RR + GDK + RHG KGV I EDMP+ Sbjct: 870 AERVLLTYNEDEA----HLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPF--- 922 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD 1150 N LG+ M I+ H G ++ K+ +L + V + Y Sbjct: 923 --------NDLGMVPDM----IMNPH-GYPSRMTVGKLMELLSGKAGV------MNGTYH 963 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 G F G + ++ E L G+ Sbjct: 964 YGT--------------------------------AFGGDQVKDVCEELAARGYNYMGKD 991 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 L G TG+ + G +Y KL H+V DKMHAR+ G + +T+QP G+++ GG R Sbjct: 992 MLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRL 1051 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDD 1297 GEME L AYGA+ L E L V SD+ Sbjct: 1052 GEMERDCLIAYGASMLLIERLMVSSDE 1078 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 22/168 (13%) Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE-------NQFRVGLVRVERAVKERLSLG 482 ++LI G+ E+DD D GN+R+ G + +F L R+ + Sbjct: 337 RRLIQTEMGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNALMKTMAA 396 Query: 483 DLDTL--MPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGPGGLT 539 LD + M QDMI ++A G+ + +F M++ ++ ISALG +T Sbjct: 397 PLDIVKHMRQDMITNTIVNAMST---GNWIIKRFRMERLGVTQVLSRLSYISALG--MMT 451 Query: 540 RERAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 R + FE R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 452 RINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISH 499 >UniRef50_Q3LW79 Second-largest subunit of RNA polymerase III n=1 Tax=Bigelowiella natans RepID=Q3LW79_BIGNA Length = 1074 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 64/288 (22%) Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + RHG KGV+ + P++ NG D ++NP G SRM +GQ+LE+ Sbjct: 841 GDKYSSRHGQKGVVGLMGNKIHFPFNLNGQIPDFIMNPAGFTSRMTMGQVLESLFTKVVL 900 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL--STFSDEEVMRLAENLRKGM 1180 G+ + + + ++ D Q + L + FS +E M N +KG Sbjct: 901 AKGNPFKSSIFESNKLYL------------KDCTQSLILCDTEFSGKETMI---NPKKGS 945 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 + +F G P+ + KL HLV Sbjct: 946 IYNSTIFTG----------------------------------PI-----FYHKLKHLVS 966 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 +K+ +RS+G ++T+QP+ G+ + GG R GEME + A+G L E + SD Sbjct: 967 NKIQSRSSGRKHILTKQPVKGRGKQGGLRIGEMEKDCIIAFGCTSVLVERMLENSDSHKF 1026 Query: 1301 RTKMYKNIVDG--------NHQMEPGMPESFNVLLKEIRSLGINIELE 1340 I+D N + + +F +L +E+++ I+I ++ Sbjct: 1027 ILVKKSGIIDASNKKLSTTNKIYKNRISYAFKLLFQELQATNISIRIK 1074 >UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 99B1 RepID=D2TET4_9VIRU Length = 1507 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 114/295 (38%), Gaps = 75/295 (25%) Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 + RHG KGV P D P +G DI++NP +PSRM I GM + + Sbjct: 1266 SSRHGQKGVCGVTMPAADFPCTADGVAPDIIINPHAIPSRMTI--------GMLMEMVLS 1317 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 K+ + Q+ G P Sbjct: 1318 KVACYEGETQD-----------------------------------------GTP----- 1331 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G I + L+ + G LY+G +GE E + + Y +L H+V DK HAR Sbjct: 1332 FTGNNIELIADRLETHGMQRYGNEMLYNGMSGEILESMIFIAPCYYQRLKHMVVDKSHAR 1391 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---------- 1296 + G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L +SD Sbjct: 1392 NRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKC 1451 Query: 1297 -----------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 V ++ G H +P S +L++E+ + I+ LE Sbjct: 1452 GHFAREGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLE 1506 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 12/140 (8%) Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE--EITADIPNVG- 858 VA M ++G+N +DS+L+++ + FT+ + + T E E +IP Sbjct: 758 VAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEEKGTGADIERFENPKNIPGCSG 817 Query: 859 --EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 EA SK+D+ G+ IG GD+L+GKV Q P+E GE D K Sbjct: 818 MKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKE-------GEVRRDTKRD 870 Query: 917 SLRVPNGVSGTVIDVQVFTR 936 V V+D F++ Sbjct: 871 RSHVLRTDEPVVVDAVFFSK 890 >UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bilateria RepID=Q7Q416_ANOGA Length = 1089 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 10/159 (6%) Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G+K +++++ L G+ Y G TGE E + G +Y KL H+V DKMHAR Sbjct: 922 FGGSKCSDLQDELFNHGFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHAR 981 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-------DVN 1299 + G +++T+QP G+++ GG R GEME L +YGA+ + E L + SD +V Sbjct: 982 ARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFDVDVCNVC 1041 Query: 1300 GR---TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 GR + N MP + +L +E+ S+ I Sbjct: 1042 GRLAYSSWCHNCRSSASVSTISMPYACKLLFQELTSMNI 1080 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 43/66 (65%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 +VK+ L RR + GDK + RHG KGV I ED+P+++ G D+V+NP G PSRM Sbjct: 838 LVKILLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDYGMSPDMVMNPHGFPSRMT 897 Query: 1109 IGQILE 1114 +G+ LE Sbjct: 898 VGKTLE 903 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 22/156 (14%) Query: 439 KGEVDDIDHLGNRRIRSVGE----MAENQFR-----VGLVRVERAVKERLSLGDLDTLMP 489 + VDD D+ GN+R+ G M E+ F+ + ++ + K + + D+ M Sbjct: 343 RSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKMIADKNIPKIKAAQFDVGKHMR 402 Query: 490 QDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE-- 546 + +I A + A+ G+ + +F M++ ++ ISALG +TR + FE Sbjct: 403 EALITAG-LETAIST--GNWTIKRFKMERAGVTQVLSRLSYISALG--MMTRVNSQFEKT 457 Query: 547 -----VRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 458 RKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLAL 493 >UniRef50_B9RDB2 DNA-directed RNA polymerase beta chain, putative n=1 Tax=Ricinus communis RepID=B9RDB2_RICCO Length = 173 Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 40/82 (48%), Positives = 57/82 (69%) Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 E + R + E + +QV + Q S+GASLIPF+EH+DAN+ALM +NMQRQAV Sbjct: 87 EQVAPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANQALMSSNMQRQAV 146 Query: 691 PTLRADKPLVGTGMERAVAVDS 712 P R++K +VGTG+ER VA+++ Sbjct: 147 PLSRSEKCIVGTGLERQVALEA 168 >UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 6 RepID=RPB2_IIV6 Length = 1193 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 49/254 (19%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 G+L + K+ +A ++R + GDK KG + I DMP+ E+G+ D+++NP +P Sbjct: 924 GIL-MFKIVIAQQKRPEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLP 982 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM I QI+ + +G AK F D S F Sbjct: 983 SRMTINQIMASIMGKTC----------------CAKNETF--------------GDASPF 1012 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + + + + + A KEL + G +G + G G++ Sbjct: 1013 QESSLEKPQDKIH---------------ALCKELEECG-YNYNGTETMMCGWNGKKLRAE 1056 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYS--LVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + G +Y +L H+V DK+ +R++ + +T+QPL G+A GG R GEME + +G Sbjct: 1057 IFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEKDCMLVHG 1116 Query: 1283 AAYTLQEMLTVKSD 1296 + L E + +SD Sbjct: 1117 ISKFLHEKMFDQSD 1130 >UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO2_MIMIV Length = 1196 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 127/313 (40%), Gaps = 89/313 (28%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 I+K+ + +R GDK + R G KG I DM + ++G DI++NP +P RM Sbjct: 932 IIKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMT 991 Query: 1109 IGQILETHLG--MAAKGI-GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 IGQ++E LG A KG+ GD A VDL+ + Sbjct: 992 IGQLIECLLGKLCAVKGVYGD--------------------------ATPFTSVDLNAIN 1025 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 DE V E G +Y+G G++ + Sbjct: 1026 DELVAAGYEEW-------------------------------GNETMYNGMNGKKLPVKI 1054 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG-EMEVWALEAYGAA 1284 +G Y +L +V DK H+R+ G L+T+Q G+++ GG R G EME AL A+G A Sbjct: 1055 FIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGVA 1114 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE----------------------S 1322 L+E TV + D+ ++ D Q +PE + Sbjct: 1115 QFLKEK-TVDNSDI-----YTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVIPYA 1168 Query: 1323 FNVLLKEIRSLGI 1335 F +LL+E+ S+ I Sbjct: 1169 FKLLLQELASINI 1181 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 14/148 (9%) Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPIS- 499 DD D + N+RI G + F+ ++ + ++D P ++I + KP S Sbjct: 383 CDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPPNIIPHIKPNSI 442 Query: 500 ------AAVKEFFGSSQ---LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 A FGS LSQ +++ N L +++ RR+ + P R + Sbjct: 443 EQGLRQALSTGNFGSQSRKGLSQMLNRMNHLHSLSYMRRV--ITPTVDASTMKMTSPRHL 500 Query: 551 HPTHYGRVCPIETPEG-PNIGLINSLSV 577 H T YG +CP+E+PEG P GL+ ++++ Sbjct: 501 HNTQYGSMCPLESPEGKPKTGLVKNMAM 528 >UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSV4_ENTBH Length = 1138 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 109/251 (43%), Gaps = 56/251 (22%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K KV + R Q GDK A RH KGV+ EDMP+ +G D+ Sbjct: 887 KFTKVKVRSMRIPQMGDKFASRHAQKGVVGITLKQEDMPFTSDGLIPDV----------- 935 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 I+ H + IG A+L + L+T + Sbjct: 936 ----IINPHAIPSRMTIGHLFEALLGK--------------------------LTTLNGI 965 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAE--IKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 E ATP + + + KEL K G +I ++ G TG + + + Sbjct: 966 E------------GDATPFANKPQTIDEISKELAKYGYQKRGFEI-MHSGATGYKLKSQI 1012 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +G Y +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME + ++GA+ Sbjct: 1013 FIGPTYYQRLKHMVDDKLHARARGPLQIMTRQPVEGRSREGGLRFGEMERDCIISHGASA 1072 Query: 1286 TLQEMLTVKSD 1296 L+E L SD Sbjct: 1073 FLKERLMDVSD 1083 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 19/167 (11%) Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR------------VERAV 475 ++ K++ + GK +VDD DH G +R+ G + N F+V + VE Sbjct: 351 MINKILLVITGKRDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLLTETTKYLQKCVENNR 410 Query: 476 KERLSLGDLDTLMPQDMINAKPIS---AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 + L++G +++ Q A K + ++Q + + N LS ++H RR++ Sbjct: 411 EFNLTIGLKSSIITQGFKYALATGNWGHQEKAMSTRAGVAQVLSRYNFLSTLSHLRRVNT 470 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 + +E R +H TH+G +CPIETPEG GL+ +LS+ A Sbjct: 471 ----PIEKEGKLAAPRQLHNTHWGMICPIETPEGHACGLVKNLSLMA 513 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 36/184 (19%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI--------------HIQELAC 838 EL GQN VA ++GYN EDSI++++ + F + + E C Sbjct: 743 ELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKIC 802 Query: 839 -VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 + R P++ DI L GIV G +V G D+++GK+TP + + Sbjct: 803 KIERSVIFRPKKNNYDI----------LGNDGIVCPGTQVYGDDVIIGKMTPILDVE--- 849 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK---RALEIEEMQLK 954 ++ G KD+S + G + V V T+DG + K R++ I +M K Sbjct: 850 -----KSTPGNPFYLFKDTSTLIRKTEQGNIDKVIVTTKDGYKFTKVKVRSMRIPQMGDK 904 Query: 955 QAKK 958 A + Sbjct: 905 FASR 908 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Ta... 1704 0.0 UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 T... 1692 0.0 UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Ta... 1675 0.0 UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Ta... 1671 0.0 UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 T... 1669 0.0 UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 T... 1646 0.0 UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Ta... 1620 0.0 UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Ta... 1584 0.0 UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria Re... 1582 0.0 UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 T... 1561 0.0 UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulf... 1545 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 1421 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1420 0.0 UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Ta... 1371 0.0 UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Ta... 1365 0.0 UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax... 1361 0.0 UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Ta... 1354 0.0 UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Ta... 1324 0.0 UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria Re... 1321 0.0 UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Ta... 1310 0.0 UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus C... 1269 0.0 UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria Rep... 1253 0.0 UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax... 1252 0.0 UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 T... 1219 0.0 UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Ta... 1168 0.0 UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria R... 1132 0.0 UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 T... 1064 0.0 UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Ta... 1062 0.0 UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella ... 1044 0.0 UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 T... 1043 0.0 UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 1035 0.0 UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira ... 1030 0.0 UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=... 1025 0.0 UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 1015 0.0 UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Ta... 1013 0.0 UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax... 1007 0.0 UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haem... 1000 0.0 UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Ta... 984 0.0 UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Ta... 978 0.0 UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculu... 947 0.0 UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax... 904 0.0 UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Ta... 888 0.0 UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax... 885 0.0 UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacter... 884 0.0 UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Ta... 880 0.0 UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA po... 876 0.0 UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax... 868 0.0 UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 T... 868 0.0 UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax... 865 0.0 UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 T... 864 0.0 UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Ta... 864 0.0 UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Ta... 864 0.0 UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomac... 864 0.0 UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcu... 863 0.0 UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 T... 851 0.0 UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax... 848 0.0 UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacter... 825 0.0 UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Ta... 805 0.0 UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 799 0.0 UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax... 798 0.0 UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Ta... 795 0.0 UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax... 795 0.0 UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 T... 791 0.0 UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax... 785 0.0 UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Ta... 783 0.0 UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Ta... 774 0.0 UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax... 747 0.0 UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular o... 745 0.0 UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax... 709 0.0 UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 705 0.0 UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=A... 687 0.0 UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax... 662 0.0 UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Ta... 657 0.0 UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax... 648 0.0 UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 ... 646 0.0 UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis sol... 646 0.0 UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas ... 645 0.0 UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax... 644 0.0 UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Ta... 642 0.0 UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 T... 641 0.0 UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax... 639 0.0 UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax... 637 0.0 UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-termi... 625 e-177 UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae... 624 e-177 UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-termi... 620 e-175 UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-termi... 603 e-170 UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 597 e-168 UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax... 570 e-160 UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carte... 566 e-159 UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Ta... 559 e-157 UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas... 556 e-156 UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogon... 548 e-154 UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax... 541 e-152 UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=... 509 e-142 UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix s... 508 e-142 UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax... 504 e-140 UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomona... 499 e-139 UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain ... 491 e-136 UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 456 e-126 UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=F... 425 e-117 UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit ... 423 e-116 UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax... 406 e-111 UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 ... 379 e-103 UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 371 e-100 UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Ta... 366 4e-99 UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax... 354 2e-95 UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorell... 347 2e-93 UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=P... 344 2e-92 UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-termi... 337 2e-90 UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=A... 335 9e-90 UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeo... 334 2e-89 UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax... 332 5e-89 UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunalie... 322 7e-86 UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga bre... 321 1e-85 UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota ... 320 2e-85 UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psych... 320 3e-85 UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella s... 318 7e-85 UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplant... 317 2e-84 UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpu... 310 2e-82 UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota R... 310 4e-82 UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 310 4e-82 UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 309 5e-82 UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella t... 309 5e-82 UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylu... 309 6e-82 UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=45... 308 7e-82 UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n... 307 2e-81 UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota Re... 307 2e-81 UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota ... 306 3e-81 UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=12... 306 3e-81 UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=... 306 5e-81 UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 305 6e-81 UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium c... 304 2e-80 UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 303 4e-80 UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 303 4e-80 UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 303 4e-80 UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-termi... 302 7e-80 UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 ... 301 2e-79 UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 ... 300 2e-79 UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26... 300 2e-79 UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 300 3e-79 UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi... 300 4e-79 UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit R... 299 4e-79 UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-termi... 299 7e-79 UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=2... 297 2e-78 UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota R... 297 2e-78 UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 297 2e-78 UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 297 2e-78 UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota R... 296 5e-78 UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax... 294 1e-77 UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 293 3e-77 UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 293 4e-77 UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata Re... 293 4e-77 UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax... 293 5e-77 UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata Re... 292 5e-77 UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomyce... 291 9e-77 UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepI... 291 1e-76 UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=... 289 4e-76 UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular org... 288 8e-76 UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=... 288 9e-76 UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomat... 288 1e-75 UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus ma... 288 1e-75 UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota R... 287 2e-75 UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta ... 287 2e-75 UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium... 286 3e-75 UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 286 3e-75 UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 286 4e-75 UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 286 4e-75 UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeot... 286 6e-75 UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 285 6e-75 UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 285 7e-75 UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 285 8e-75 UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophy... 285 1e-74 UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora l... 284 1e-74 UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 284 1e-74 UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 ... 283 2e-74 UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyc... 283 5e-74 UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax... 281 2e-73 UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum... 280 2e-73 UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 T... 280 3e-73 UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa... 280 4e-73 UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabdit... 280 4e-73 UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q... 279 6e-73 UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 279 7e-73 UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia ... 278 1e-72 UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (... 278 2e-72 UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 ... 277 2e-72 UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium R... 277 2e-72 UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit ... 276 3e-72 UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomona... 275 6e-72 UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas R... 275 7e-72 UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota Re... 275 7e-72 UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 275 8e-72 UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora ... 275 9e-72 UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putat... 275 1e-71 UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 274 2e-71 UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit ... 274 2e-71 UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenop... 273 4e-71 UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporid... 273 4e-71 UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 272 5e-71 UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 272 6e-71 UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta ... 272 7e-71 UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitoz... 272 8e-71 UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious s... 272 9e-71 UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 271 9e-71 UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 271 1e-70 UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 271 1e-70 UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 T... 271 1e-70 UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 271 2e-70 UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=N... 271 2e-70 UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophy... 270 3e-70 UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 268 8e-70 UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular org... 268 1e-69 UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=I... 266 5e-69 UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia inte... 265 8e-69 UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 263 3e-68 UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus... 262 6e-68 UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=P... 262 7e-68 UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenop... 262 7e-68 UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus Re... 261 9e-68 UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa pol... 258 1e-66 UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus ma... 257 2e-66 UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax... 255 7e-66 UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Ta... 254 1e-65 UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora ... 252 6e-65 UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=L... 252 7e-65 UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hyp... 251 2e-64 UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis ... 250 3e-64 UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 249 5e-64 UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit ... 247 2e-63 UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 247 3e-63 UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=F... 245 8e-63 UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrel... 245 9e-63 UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides ... 244 1e-62 UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 244 2e-62 UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyan... 243 5e-62 UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit ... 241 1e-61 UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative ... 240 2e-61 UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-termi... 240 3e-61 UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment... 239 5e-61 UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 239 7e-61 UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Ac... 237 3e-60 UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 236 4e-60 UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) II... 235 1e-59 UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 234 2e-59 UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=E... 233 5e-59 UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=So... 231 1e-58 UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA PO... 229 6e-58 UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kD... 228 1e-57 UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 228 1e-57 UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide ... 226 5e-57 Sequences not found previously or not previously below threshold: >UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Tax=cellular organisms RepID=RPOB_NOVAD Length = 1392 Score = 1704 bits (4413), Expect = 0.0, Method: Composition-based stats. Identities = 782/1360 (57%), Positives = 1012/1360 (74%), Gaps = 29/1360 (2%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY--GLEAAFRSVFPIQSYSGN 65 KKRIRK FG +V+ +P L+ +Q +S+++F+ DP Y GLE RSVFPIQ ++G Sbjct: 17 KKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDPATGYVSGLEKTLRSVFPIQDFAGT 76 Query: 66 SEL---QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTVKDIKEQ 120 + L + Y L P +DV EC+ RG+TY+AP++V L+L +E E ++ DIKEQ Sbjct: 77 ASLDIKEKDGYVLESPKYDVNECRQRGITYAAPMKVTLKLATFEVDAETETKSLIDIKEQ 136 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG+IPLMT+NGTF INGTERVIVSQ+HRSPGV FD D+GKTHSSGK L+ AR+IPYR Sbjct: 137 DVYMGDIPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIPYR 196 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 GSWLDFEFD KD + VRIDR+RKLP T +L AL E IL F++ V + + ++ Sbjct: 197 GSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLGDEDILHHFYDTVTWARAEGGWKVP 256 Query: 241 LVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 V E+ RG +FDI +G+V G++I+ R + KD ++ + +P E I G+ A Sbjct: 257 FVLEQWRGSKPAFDIVDAKSGEVIFPAGQKISPRAANKAAKDGLEALLIPTEEIFGRYAA 316 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 +D IDESTG + A E+S + L L ++G ++ L + + GP+I TL+ D D Sbjct: 317 RDLIDESTGRIWIEAGDEVSPENLDLLDKAGIDNLDLLDIDHISTGPWIRNTLKADKAPD 376 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R AL +IYR+MRPGEPPTRE AE+LF+ LFF DRYDLSAVGR+K N L + + Sbjct: 377 RDHALADIYRVMRPGEPPTRETAEALFDGLFFDGDRYDLSAVGRVKLNMRLGLDCPDTVT 436 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 L DDI+ V+K+L+++++GKGEVDDID+LGNRR+RSVGE+ ENQ+RVGL+R+ERAVKER Sbjct: 437 TLRTDDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 496 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S D+ T+MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGL Sbjct: 497 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 556 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 TRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLS +A+ N+YGF+ETPYRKV DG Sbjct: 557 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVVDGK 616 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT ++ YLSA+EE + +AQA++ L +G FVE+LV+ R GE + RD V MDVS + Sbjct: 617 VTKDVIYLSAMEEQKHTVAQASAELTADGSFVEELVSARQNGEFVMAPRDTVTLMDVSPK 676 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP ++AD P VGTGME VA DSG A Sbjct: 677 QLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKADAPFVGTGMEETVARDSGAAISA 736 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 R GVV VDA+RIVI+ ++ PG++G+DIY L K+ RSNQ+TCINQ P V +G+ +E Sbjct: 737 LRSGVVDQVDATRIVIRA-SGDIEPGQSGVDIYRLQKFERSNQSTCINQRPLVKVGDLIE 795 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ED FT+IHI+E Sbjct: 796 KGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVFTSIHIEEFEV 855 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDILVGK+TPKGE+ +TPE Sbjct: 856 MARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPMTPE 915 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 EKLLRAIFGEKASDV+D+SLR+P GV+GT++DV+VF R G+E D R I+ ++++ K Sbjct: 916 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIEIDDRTRAIQNEEIERLAK 975 Query: 959 DLSEELQILEAGLFSRIRAVLVAG-------------GVEAEKLDKLPRDRWLELGLTDE 1005 D +E IL F+R++ +L+ ++ + L + R W + + D+ Sbjct: 976 DREDERAILNRATFNRLKDMLLGQVAAAAPKGIKKGVEIDEQVLADVERHEWWKFAVADD 1035 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 +Q QLE + QYD ++K E ++ K+ +GD+LAPGVLK+VKV++AVKR++QPGDK Sbjct: 1036 ARQQQLEAVKAQYDTAVKAIQEKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQPGDK 1095 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKG+IS+I P EDMP+ E+GTPVD VLNPLGVPSRMN+GQI ETHLG AA+G+G Sbjct: 1096 MAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAARGLG 1155 Query: 1126 DKINAMLKQQQEVAK------LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 +I L +E E ++ ++ +DE+++ A+++R G Sbjct: 1156 KRIGEALDAWREANPNPEAGQPPEAVRELLKEIYGDNYAAEIDARNDEQIIDFAQSVRLG 1215 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 +P+ +PVFDGA E ++ ++L+L L SGQ+ L+DGRTG+ F+R VTVG Y+LKL+HLV Sbjct: 1216 VPMGSPVFDGAVEKDVTDMLRLAGLDESGQVTLFDGRTGDAFDRKVTVGMKYVLKLHHLV 1275 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAYTLQEMLTVKSDDV Sbjct: 1276 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVV 1335 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1336 GRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1375 >UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 Tax=Bacteria RepID=RPOB_METPP Length = 1375 Score = 1692 bits (4382), Expect = 0.0, Method: Composition-based stats. Identities = 872/1369 (63%), Positives = 1067/1369 (77%), Gaps = 33/1369 (2%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFP 58 YSYTE+KRIRK FGKR VL VPYLL++Q DS+ F+++D Q GL+AAF S FP Sbjct: 7 YSYTERKRIRKSFGKRENVLGVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAAFLSAFP 66 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE---GTVK 115 I S++G E++Y+ + + +P FD +ECQ RG+TY+A +R KL+++IY+RE VK Sbjct: 67 IVSHNGFVEMKYIEFNMAKPAFDTRECQQRGLTYAAAVRAKLQMIIYDRETSTSQSKVVK 126 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +IKEQEVYMGE+PLMTD G+F++NGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++AR Sbjct: 127 EIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 186 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 IIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ EQIL FF F + D+ Sbjct: 187 IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDNFRLMDS 246 Query: 236 KLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 QME V +RLRGE A FD+ + G V VEK +RITARH R LE I VP +++ G Sbjct: 247 GAQMEFVADRLRGEIARFDLTDKAGAVIVEKDKRITARHTRALEASGTSFISVPEDFLVG 306 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 +V+AK+ +D TGE+I AN EL+ LL KL +G K I+ L+TN+LD G YIS+TL D Sbjct: 307 RVLAKNMVDADTGEIIAKANDELTDSLLKKLRTAGIKDIQCLYTNELDMGAYISQTLASD 366 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 T D L+A V IYRMMRPGEPPT +A ++LF LF+SED YDLS VGRMKFN + R+ Sbjct: 367 ETADELAARVAIYRMMRPGEPPTEDAVQALFNRLFYSEDTYDLSRVGRMKFNARVGRDTA 426 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 EG +L+ DDI+DV+K L+++RNG+GEVDDIDHLGNRR+R VGE+AENQ+R GL R+E+A Sbjct: 427 EGRMVLANDDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLARIEKA 486 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 VKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFMDQ NPLSEITHKRR+SALG Sbjct: 487 VKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALG 546 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL++YAQ NEYGFLETPYR+V Sbjct: 547 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRRV 606 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 D VTD+I YLSAIEEG YVIAQAN+ LD++G +++LV+ R GES L S +++ YMD Sbjct: 607 IDSKVTDQIDYLSAIEEGKYVIAQANAGLDKDGKLIDELVSARESGESVLTSPERIQYMD 666 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 V+ Q+VSV ASL+PFLEHDDANRALMGANMQRQAVP LR +K VGTG+ER AVDSG Sbjct: 667 VAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGVERVSAVDSGT 726 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 AKRGGVV Y+D +RIVI+VN+ E GE G+DIYNL KY RSNQNT I+Q P V G Sbjct: 727 VVTAKRGGVVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVQRG 786 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V GDV+ADG STD+GELALGQNM VAFMPWNGYNFEDSIL+SERVV +DR+T+IHI+ Sbjct: 787 DQVGAGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTSIHIE 846 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 EL ++RDTKLG EEIT DIPN+ E L +LDESGIVYIGAEV GD+LVGKVTPKGET Sbjct: 847 ELVVMARDTKLGSEEITRDIPNLSEQQLGRLDESGIVYIGAEVNPGDVLVGKVTPKGETT 906 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 LTPEEKLLRAIFGEKASDVKD+SLRV G +GTVIDVQVFTR+G+++DKRA +I + +LK Sbjct: 907 LTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQIIDDELK 966 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGG-------------VEAEKLDKLPRDRWLELG 1001 + + DL+++L+I+EA F RI +L ++ L + + W ++ Sbjct: 967 RFRLDLNDQLRIVEADAFDRIEKLLAGKTANGGPNKLAKGTPIDKAYLASVDKYHWFDIR 1026 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 D++ NQLE + ++ +H F+ E KR+K+TQGD+L GVLK+VKVYLAVKRR+Q Sbjct: 1027 PADDDIANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQ 1086 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 PGDKMAGRHGNKGV+SKI P+EDMPY +GTP DIVLNPLGVPSRMN+GQ+LE HLG AA Sbjct: 1087 PGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGWAA 1146 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 KGIG +I +L+Q+ ++A +R+F+ Y+ + L+ SD E+ +A NL +G+P Sbjct: 1147 KGIGQRIGDLLQQEAKIADVRKFLDELYNKSG--GKSEGLNGLSDAEITEMATNLAQGVP 1204 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPT----------SGQIRLYDGRTGEQFERPVTVGYMY 1231 ATPVFDGA E EI+ ++ L Q L+DGRTG+ FERPVTVGYM+ Sbjct: 1205 FATPVFDGATEEEIRAMMHLAYPDEIAAAKGLNATRTQATLHDGRTGDAFERPVTVGYMH 1264 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEML Sbjct: 1265 VLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEML 1324 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 TVKSDDVNGRTK+Y++IV G H +E GMPESFNVL+KEIRSLGI+IELE Sbjct: 1325 TVKSDDVNGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGIDIELE 1373 >UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Tax=Neisseriaceae RepID=RPOB_NEIG1 Length = 1392 Score = 1675 bits (4338), Expect = 0.0, Method: Composition-based stats. Identities = 890/1393 (63%), Positives = 1097/1393 (78%), Gaps = 56/1393 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ----DPEGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR VL+VP+LL+ Q+DS+ KF++ D GL+AAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + L++V Y LGEP+FD+ ECQ+RG+TY+APLR ++RLVI ++EA + TVK+ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKE 120 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 ++E EVYMGEIPLMT +G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 121 VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 180 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDFEFDPKD L+ RIDRRRK+P TI+L+AL Y EQILD+F++K F + N Sbjct: 181 IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNG 240 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +Q +LV RL+GETA DI + G V V KG+RITA++IR + + ++V E + GK Sbjct: 241 VQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQESLLGK 300 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D ID TGE++ +AN E++ +LLAK +G K I TL+ N+LD G YIS TLR D Sbjct: 301 ALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDE 360 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T R +A V IYRMMRPGEPPT EA E LF LFFSED YDLS VGRMKFN +++ Sbjct: 361 TAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKLS 420 Query: 416 GSG----------------------ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + +LS +DI+ + L+++RNG GEVDDIDHLGNRR+ Sbjct: 421 EAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV 480 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 RSVGE+ ENQFR GL RVERAVKERL+ + + LMP D+INAKP+SAA+KEFFGSSQLSQ Sbjct: 481 RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ 540 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN Sbjct: 541 FMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 600 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 SLSVYA+TN+YGFLETPYR+V DG VT+EI YLSAIEEG YVIAQAN++LD +G+ + DL Sbjct: 601 SLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDL 660 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 VTCR KGE+ + + D+V YMDV+T QVVSV ASLIPFLEHDDANRALMGANMQRQAVP L Sbjct: 661 VTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL 720 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 R +KP+VGTG+ER+VAVDS VA+RGGVV+YVDA+R+VI+V++DE GE G+DIYNL Sbjct: 721 RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNL 780 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 K+TRSNQ+T INQ P V G+ ++RGD++ADG STDLGELALGQNM +AFMPWNGYN+E Sbjct: 781 VKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYE 840 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 DSIL+SE+V +DR+T+IHI+EL V+RDTKLG E+IT DIPN+ E ++LDESGIVYI Sbjct: 841 DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI 900 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GAEV GD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLR+P G+SGTVIDVQV Sbjct: 901 GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV 960 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG---------- 983 FTR+G+++DKRA I + +LK+ + DL+++L+I + F RI ++V Sbjct: 961 FTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLTK 1020 Query: 984 ---VEAEKLDKLP-RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + E L LP R W ++ LTDE+ QLE + + + E ++ E K++K+TQG Sbjct: 1021 GSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKKLTQG 1080 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L PGV K+VKV++A+KRR+Q GDKMAGRHGNKGV+S+I P+EDMPY +G PVDIVLN Sbjct: 1081 DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN 1140 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQILE HLG AAKGIG++I+ MLK++++ +LREF+ + Y+ +K Sbjct: 1141 PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGELREFLNKLYNGS---GKKE 1197 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL------------KLGDLPTS 1207 DL + +DEE++ LA NLRKG A+PVFDGAKE+EI+E+L KLG + Sbjct: 1198 DLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGFNDSK 1257 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 QI LYDGR+GE F+R VTVG M+ LKL+HLVD+KMHARSTG YSLVTQQPLGGKAQFGG Sbjct: 1258 TQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGG 1317 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY+NIV G H+++ GMPESFNVL+ Sbjct: 1318 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLV 1377 Query: 1328 KEIRSLGINIELE 1340 KEIRSLG++I+LE Sbjct: 1378 KEIRSLGLDIDLE 1390 >UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Tax=Bacteria RepID=RPOB_ANAD2 Length = 1422 Score = 1671 bits (4327), Expect = 0.0, Method: Composition-based stats. Identities = 785/1388 (56%), Positives = 1029/1388 (74%), Gaps = 52/1388 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M + RIR++FGK ++ ++P L++IQ S+ KF++ D + GL+ F+SV Sbjct: 1 MATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 FPI+ ++ S L++VSY L +P +DV EC RG+TYSAP++V +RLV+++++ G ++ Sbjct: 61 FPIKDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT+NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT--------------TEQI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT++LRAL T E+I Sbjct: 181 RIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI 240 Query: 221 LDLFFEKVIFEIR-DNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQL 277 L +++ I K + +LVP+ L+G+ A+ DI + +V V+K R+ T I++L Sbjct: 241 LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKL 300 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 +K + V E + K+ A+D +DE+TGE++ N E++ + +L + + LF Sbjct: 301 VAAKMKSLPVEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLF 360 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 ++L+ P + +TL D + A++EIYR +RPG+PPT E A +LF NLFF+ +RYDL Sbjct: 361 IDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDL 420 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRS 455 S VGR+K N EE + +L+K DI++V++ LID++NGK +VDDIDHLGNRR+R+ Sbjct: 421 SKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA 480 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VGE+ ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFM Sbjct: 481 VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFM 540 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLI SL Sbjct: 541 DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASL 600 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 S YA+ NEYGF+ETPYRKV G VTDE+ + SA+EE ++IAQAN+ +D++G+F E V Sbjct: 601 STYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVW 660 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 CR +GE D+VD MDVS Q+VSV ASL+PFLE+DDANRALMG+NMQRQAVP LR Sbjct: 661 CRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT 720 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLT 754 PLVGTG+E VA DSGVT VAKR GVVQ VDASRIV+K + +DIYNL Sbjct: 721 QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLI 780 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 KY RSNQNTCINQ P V GE V++GDV+ADGP+T++GELALGQN+ VAFMPW GYNFED Sbjct: 781 KYQRSNQNTCINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFED 840 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 SIL+SER+++ED FT++HI+E CV+RDTKLG EEIT DIPNVGE AL LDESGI+ IG Sbjct: 841 SILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIG 900 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 AEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GVSGTVI+ +VF Sbjct: 901 AEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF 960 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE------- 987 +R GVEKD+RA IEEM+ + KD ++E++I++ F +IR +L+ V A Sbjct: 961 SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGE 1020 Query: 988 ------------KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 LD +P+ W E+ + + Q+ ++ E ++E K + K + Sbjct: 1021 QLLKKGDVLDDALLDTVPQRYWGEIAVAGD-VQDLARKIIENFEEQKELVKLLFGEKIGR 1079 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 + +GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S++ P ED+PY E+GTPVD Sbjct: 1080 LKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVD 1139 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY----DL 1151 IVLNPLGVPSRMN+GQILETHLG AA+ +G ++ M++++ LR+ ++ A+ Sbjct: 1140 IVLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGG 1199 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 R + ++E+ +L + LR+GM +ATPVFDGA+E E+K L++ G + Q Sbjct: 1200 PVGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEG--SATLQSI 1257 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 L+DGRTGE F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR G Sbjct: 1258 LFDGRTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLG 1317 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWA+EAYGAAY+LQE LTVKSDDV GRT+MY+ IV G + +E G+PESFNVL+KE++ Sbjct: 1318 EMEVWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQ 1377 Query: 1332 SLGINIEL 1339 SL +++EL Sbjct: 1378 SLALDVEL 1385 >UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 Tax=Bacteria RepID=RPOB_MYXXD Length = 1408 Score = 1669 bits (4322), Expect = 0.0, Method: Composition-based stats. Identities = 778/1381 (56%), Positives = 1015/1381 (73%), Gaps = 46/1381 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M R+RK F K +++D+P L++IQ S++KF++ D GL+ F+SV Sbjct: 1 MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 FPI+ ++ S L++VSY L P +DV EC RG+TYSAP++V +RLV+++++ G ++ Sbjct: 61 FPIRDFNETSSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY--------------TTEQI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT+++RAL +TE+I Sbjct: 181 RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI 240 Query: 221 LDLFFEKVIFEIRD-NKLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLE 278 L+ ++ + + + + E L G+ A+ DI G++ V+K R+ T I++LE Sbjct: 241 LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLE 300 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +K + + + + KV A D ++E+ G ++ N E++ + + +L + G K + LF Sbjct: 301 AAKMKTLPIDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFI 360 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 ++L+ GPY+ ETL +D +++EIYR +RPG+PPT E A +LF NLFF+ +RYDLS Sbjct: 361 DNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS 420 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 VGR+K N EE IL+K DI++V++ LID++NGKG +DDIDHLGNRR+R+VGE Sbjct: 421 KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE 480 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFMDQ Sbjct: 481 LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT 540 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SLS Y Sbjct: 541 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY 600 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ NE+GF+ETPYRKV GVVT+++ + SA+EE + IAQAN+ D++G F LV+ R Sbjct: 601 ARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRR 660 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 GE + VD MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP LR P Sbjct: 661 GGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP 720 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLTKYT 757 LVGTG+E VA DSGVT VA+R G+V+ VDA RIV+K + + + +DIYNL KY Sbjct: 721 LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQ 780 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RSNQNTC+NQ P +S G+ V +GDV+ADGP+T+ GELALGQN+ VAFMPW GYNFEDSIL Sbjct: 781 RSNQNTCLNQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL 840 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 +SER++++D FT+IHI+E C++RDTKLG EEIT DIPNVGE AL LDESGI+ IGAEV Sbjct: 841 ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV 900 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GD+LVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GV GTVI+ +VF+R Sbjct: 901 KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK 960 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK------ 991 GVEKD+RA +IE M+ + KD ++E+++L+ F RIR ++ V+ + +D Sbjct: 961 GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILL 1020 Query: 992 -------------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 +P W E+ + D ++L + +E K + K +I + Sbjct: 1021 KKGDILDDELLSTVPYKYWGEISVGDP-LDSRLRDILRNLEETKEAVKLAFGEKIARIKK 1079 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S+I P EDMPY E+G PVDIVL Sbjct: 1080 GDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVL 1139 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQILETHLG AAKG G+ + ++ ++E ++ Y +D Sbjct: 1140 NPLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIY---SDPAFG 1196 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 L DEE+ +L ++G+ +ATPVFDGA+E EI LL G LP SGQ+ L+DGRTG Sbjct: 1197 EFLDKLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTG 1256 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWA+ Sbjct: 1257 EPFDQNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAM 1316 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE LTVKSDDV GRT+MY+ IV G++ +E G+PESFNVLLKE++SL +++E Sbjct: 1317 EAYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVE 1376 Query: 1339 L 1339 L Sbjct: 1377 L 1377 >UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 Tax=Bacteria RepID=RPOB_SPHWW Length = 1455 Score = 1646 bits (4262), Expect = 0.0, Method: Composition-based stats. Identities = 778/1440 (54%), Positives = 1010/1440 (70%), Gaps = 109/1440 (7%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY--GLEAAFRSVFPI 59 T KKRIRK FG +V+ +P L+ +Q +S+++F+ P Y GLE RSVFPI Sbjct: 5 AVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRSVFPI 64 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTVKDI 117 + ++G +EL +V Y L +P +D EC+ RG+TY+AP+RV LRL+++E + +V DI Sbjct: 65 RDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRSVLDI 124 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ+VYMG++PLMT+NGTF+INGTERVIVSQ+HRSPGV FD D+GKTH+SGK L+ AR+I Sbjct: 125 KEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVI 184 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD--- 234 PYRGSWLDFEFD KD + VRIDR+RKLP T +LRAL + ++++ +K FE D Sbjct: 185 PYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALG---DAVIEVNPDKGKFEAGDIVA 241 Query: 235 -----NKLQMELVPERLRG-ETASFDIEANGKVYVEKGRRI------------------- 269 +++ V RL E + I G + +G +I Sbjct: 242 ISGVNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILNY 301 Query: 270 ---TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL----------------- 309 T R +R V + E G+ A D ++ TGE+ Sbjct: 302 FYRTQRFVRGENGWKVPFV---AENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAG 358 Query: 310 -------------------------------ICAANMELSLDLLAKLSQSGHKRIETLFT 338 A E++ + L L ++G ++ L Sbjct: 359 KDGLETLLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVDLLDI 418 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + + GP+I TL+ D DR AL EIYR+MRPGEPPT+E AE+LF LFF +RYDLS Sbjct: 419 DHVSTGPWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLS 478 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 AVGR+K N L + + L +DI+ V+K L+D+++GKGE+DDID+LGNRR+RSVGE Sbjct: 479 AVGRVKLNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGE 538 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + ENQ+RVGL+R+ERAVKER+S D+ T MP D+INAKP AAV+EFFGSSQLSQFMDQ Sbjct: 539 LLENQYRVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQT 598 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSL+ + Sbjct: 599 NPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASF 658 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 ++ N+YGF+ETPYRK+ DG VT+E+ YLSA+EE + IAQAN+ LD EG FVEDL++ R Sbjct: 659 SRVNKYGFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISARE 718 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 GE + RD V MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +RA+ P Sbjct: 719 AGEFLMAPRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAP 778 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 VGTGME VA DSG AKR G+V VDA+RIV++ + G++G+DIY L K+ R Sbjct: 779 FVGTGMEETVARDSGAAIAAKRSGIVDQVDATRIVVRAT-GAVDAGKSGVDIYTLMKFQR 837 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 SNQ+TCINQ P V +G+ V GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+ Sbjct: 838 SNQSTCINQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILI 897 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 SER+V++D FT+IHI E ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV Sbjct: 898 SERIVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVE 957 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 GDIL GK+TPKGE+ +TPEEKLLRAIFGEKASDV+D+SLR+P GVSGTV+DV+VF R G Sbjct: 958 PGDILCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHG 1017 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV-------------AGGVE 985 ++KD+RA+ IE ++ + KD +E IL ++R++ +L+ + Sbjct: 1018 IDKDERAMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKGSEIN 1077 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 E L ++ + W + + D+ +Q LE + QYD+ KK E + K+ +GD+L PG Sbjct: 1078 EELLAEVEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPG 1137 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 VLK+VKV++AVKR++QPGDKMAGRHGNKGVIS+I P EDMP+ E+GTPVDIVLNPLGVPS Sbjct: 1138 VLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPS 1197 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ------KV 1159 RMN+GQI ETHLG AA+G+G ++ + L+ +E + + +++ Sbjct: 1198 RMNVGQIFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEYHA 1257 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D+ S ++++ +A L+ G+P+ATPVFDGA+EA++ E+L+ L SGQ+ L+DGRTG+ Sbjct: 1258 DIEGRSTDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFDGRTGD 1317 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 QF+R VTVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+ Sbjct: 1318 QFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQ 1377 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AYGAAYTLQEMLTVKSDDV GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1378 AYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1437 >UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Tax=Proteobacteria RepID=RPOB_DESDA Length = 1378 Score = 1620 bits (4194), Expect = 0.0, Method: Composition-based stats. Identities = 728/1362 (53%), Positives = 949/1362 (69%), Gaps = 40/1362 (2%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE-----GQYGLEAAFRSVFPIQSYSGNSE 67 K FGK L +P+LL++Q+DS++KF+++ GLE F +VFPI+ ++ + Sbjct: 6 KQFGKIKISLPIPHLLNLQIDSYEKFLQEGVPEAERRPDEGLEGVFHTVFPIEDFNKTAS 65 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA--PEGTVKDIKEQEVYMG 125 L++VSY +GEP +D EC +G+TY AP+R+K+RLV+Y+ + T++DIKEQ++Y G Sbjct: 66 LEFVSYEIGEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQDIYFG 125 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 +PLMT+ GTF+INGTERVIV+QL RSPG+ F+ D GKTH+S KVLY+ R+IP RGSWLD Sbjct: 126 TLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLD 185 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD-NKLQMELVPE 244 F+FD KD L+VRIDRRRK+PATI+ +A+ + EQILD F+ + + + + N + E+ E Sbjct: 186 FDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYTQETYRLEERNTIFWEVRKE 245 Query: 245 RLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 R + A DI ++ G V V+ G+ IT R R + + ++ IE+ + + G +A D D Sbjct: 246 LYRKDNAYADIVDSEGNVIVKAGKPITKRSWRLICEAGIEAIEMRPDTLDGMFLAGDVAD 305 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 TGEL+ A E++ LL ++ +G R+ L T D I +TL +D D+L A Sbjct: 306 PKTGELLAEAADEITPGLLDRMRDAGINRVSVLHTKGNDTSSSIRDTLMLDRIPDQLKAQ 365 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 EIYR +RP PPT E A S F+NLF + D YDLS VGR K N+ L +E L+ + Sbjct: 366 EEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLSLDEPSDLRTLTDN 425 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 DI+ +K L+ +++ G DDIDHLGNRR+R VGE+ ENQ+R+GLVR+ERA+KER+SL + Sbjct: 426 DILTAIKVLVHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSLQE 485 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 + TLMP D+IN KP++A +KEFFG+SQLSQFMDQ N LSE+THKRR+SALGPGGLTRERA Sbjct: 486 ISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRERA 545 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N+YGF+ETPY V +G VTDE+ Sbjct: 546 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYHVVREGRVTDEV 605 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 +L A EG+ V+AQAN+ LDE+G+ V++ VT R KGE + RD+V MD+S Q+VS+ Sbjct: 606 LHLDASREGDQVVAQANALLDEQGNLVDEFVTVRVKGEVEMRHRDEVTLMDISPSQMVSI 665 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 A+LIPFLEHDDANRALMG+NMQRQAVP LR++KPLVGTGME VA DSG VA G Sbjct: 666 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVAPADGK 725 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 ++YVDA RIV+ E ++Y + G+ Y+L KY +SNQN+C Q P G+ V++G +L Sbjct: 726 IEYVDADRIVV-AYEGDVYKKQGGVRAYDLLKYHKSNQNSCFGQKPSCHPGQIVKKGQIL 784 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 ADGP D GELALG+N+ VAFMPW GYN+EDSIL+SER V+ED FT+IHI+E V+RDT Sbjct: 785 ADGPGIDDGELALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVVARDT 844 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 KLGPEEIT DIPNV E L LDESGI+ IGA V DILVGK+TPKGETQLTPEEKLLR Sbjct: 845 KLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEEKLLR 904 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 AIFGEKA DVK++SL+VP GV GT+IDV+VF R EKD R L IE + ++ Sbjct: 905 AIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIEGHDTAVLDQKEADH 964 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL----------------------- 1000 ++ L R RA+L+ V + LP + E+ Sbjct: 965 MRALT----DRTRALLIPHVVGKQVAASLPGKKKGEVLVEAGAALTEEMLASLPVKKLSG 1020 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 +E + + ++ + YD+ ++KR K+T+GDDL PGV+K+VKV++A+KR++ Sbjct: 1021 LFKSKEVNDAVAEILKPYDQQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKL 1080 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 GDKMAGRHGNKGV+S I P EDMP+ +G PVDIVLNPLGVPSRMNIGQI+ETHLG Sbjct: 1081 SVGDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWG 1140 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 AK +G ++ +L + LR+ ++ + + + DEE LR G+ Sbjct: 1141 AKELGRQLAELLDSGAAMQVLRDEVKSIF---SSDDINALVDEMDDEEFKASVSKLRNGI 1197 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 TPVFDGA E EI ++ L G+ LYDGRTGE F+ VT G MYMLKL+HLVD Sbjct: 1198 VTKTPVFDGATEEEIWSWMERAGLANDGKTTLYDGRTGEAFKNRVTTGVMYMLKLHHLVD 1257 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 +K+HARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAY LQE LTVKSDDV G Sbjct: 1258 EKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTG 1317 Query: 1301 RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R KMY+ IV G++ +E G+PESFNVL+KE+ SLG+N+ L E Sbjct: 1318 RVKMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQE 1359 >UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Tax=Bacteria RepID=RPOB_DESAH Length = 1401 Score = 1584 bits (4102), Expect = 0.0, Method: Composition-based stats. Identities = 711/1397 (50%), Positives = 952/1397 (68%), Gaps = 59/1397 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M S KRIRK+FG + +V+D+P L+ +Q SF++F++++ + G+ F+SV Sbjct: 1 MTGSLLASKRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTV 114 PI+ ++G S L+YVSY GE ++EC RG+TY P+ + +RLV+Y+ ++A ++ Sbjct: 61 LPIKDFTGTSSLEYVSYSFGETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVTSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +DIKEQE+Y G IPLMT GTF+INGTER +VSQLHRS GVFFD DKGK+HSSGK++Y A Sbjct: 121 RDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSGVFFDHDKGKSHSSGKIIYTA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIP RGSW+D E DPKD + +RIDRRRK P TI+ +A YT E IL F++K +D Sbjct: 181 RIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVKKD 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 L E P+ L+ ASFDI G+ V+KGR T R ++QL+ +K I + E I Sbjct: 241 GILFKEFNPDNLKRNRASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISEEDI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ A + T E++ A + ++L K++ +G L+ D + +TL Sbjct: 301 IGRGFATSVVHPETEEILAKAGSLIDPEVLEKIADAGITEFSILYV-DTYSSDSMRKTLA 359 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 VD R AL+EIYR +RPG P T E A+ ++LFF YDLS VGR+K N L Sbjct: 360 VDKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPAYYDLSNVGRLKMNHRLGMS 419 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L ++DI+ L+++++ +G VDDIDHLGNRR+R+VGE+ ENQ+R+GLVR+E Sbjct: 420 TGIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRME 479 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 RA+KER+S+ ++D +MP D++N KP+SA V+EFFG+SQLSQFMDQ NPLSE THKRR+SA Sbjct: 480 RAIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSA 539 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGLTRERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SL YA+ N++GF+ETPYR Sbjct: 540 LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYR 599 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 DGVV+ +I +LSA EE + IAQAN+ LD++GH + DLVT R GE + +++ +++ Sbjct: 600 IAKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDLVTSRVGGEFEMVAKNDIEF 659 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 MDVS Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +R++ PLVGTG+E VA DS Sbjct: 660 MDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVARDS 719 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 GV VA+ G+V VDA RIV+K E+ + + IY +K+ RSNQNTC N P V Sbjct: 720 GVAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRPIVK 779 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G+ V +G+V+ADGPST++GELALG+N+ VAFMPW GYN+EDSILVSER+V+E +T++H Sbjct: 780 KGDAVRKGEVIADGPSTEMGELALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYTSVH 839 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 ++E V+RDTKLG EEIT DIPN GE AL LD+SGI+ +GAEV GDILVGK+TPKGE Sbjct: 840 VEEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRLGAEVKPGDILVGKITPKGE 899 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 TQL+PEEKLLRAIFGEKA DVKD+SLRVP GV G V +VF+R G+ KD R IE+++ Sbjct: 900 TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIEDLE 959 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA------------------EKLDKLPR 994 +++ +KD +E++I+ + R+ +L ++A + + Sbjct: 960 IEKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEGISL 1019 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + L + D + E+ + + + + + +GDDL PGVLK++K+ + Sbjct: 1020 TDLMGLTVEDSSLTEMAHVILEKAETQIKKARENFNNQASRYEKGDDLPPGVLKLIKINV 1079 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A+KR + GDKMAGRHGNKGV+S+I P+ D+PY E+G VD+VLNPLGVPSRMN+GQILE Sbjct: 1080 AMKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVDMVLNPLGVPSRMNVGQILE 1139 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVA--------------------------------KLR 1142 HLG AA+G+G +I+ ++ +++ Sbjct: 1140 IHLGCAARGLGRQIDDLIYEKKTDELRARIKRIFTTPLIKTGERANKDKTHYDFSSHYTV 1199 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 E +++ + D E + A + G+ +ATPVFDGA E+EIK L+ Sbjct: 1200 EKSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGAAESEIKSLISYA 1259 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 L SGQ LYDGRTGE F++P+TVG MYMLKL+HLVDDK+HARS G YSLVTQQPLGGK Sbjct: 1260 GLDPSGQSTLYDGRTGEPFDKPITVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGK 1319 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 AQFGGQR GEMEVWA+EAYGAA+ LQE +TVKSDD+ GRT+MY+ IV G + +EPGMPES Sbjct: 1320 AQFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTRMYEKIVKGQNVLEPGMPES 1379 Query: 1323 FNVLLKEIRSLGINIEL 1339 F VL KE++SLG++I L Sbjct: 1380 FRVLTKELQSLGLDINL 1396 >UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria RepID=C1F3Y3_ACIC5 Length = 1496 Score = 1582 bits (4096), Expect = 0.0, Method: Composition-based stats. Identities = 736/1473 (49%), Positives = 965/1473 (65%), Gaps = 152/1473 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYS-- 63 R R DF K P + +P L+ +Q S+++F++ D GL++ F SVFPI + Sbjct: 9 RSRLDFSKIPTSIKIPNLIEVQRRSYERFLQMDKLPTEREDNGLQSVFTSVFPIADFRNI 68 Query: 64 ----------GNSELQY------------------------------------------- 70 GN E + Sbjct: 69 SQLDFVDYSIGNWECKCGHLKGLHHLRTACTHCGNMVITDPFHPGDVLCQKCGTYNKNTP 128 Query: 71 -VSYRLGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TVKDIKEQEV 122 + G+P +D EC+ RG+T+SAPL+V +RL IY+++ G T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDQAECEERGMTFSAPLKVTVRLTIYDKDPETGAKTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G+IPLMT NGTF++NGTERVIVSQLHRSPGVFF++ ++ + + +IIPYRGS Sbjct: 189 FFGDIPLMTQNGTFIVNGTERVIVSQLHRSPGVFFET------ANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL + E+IL F+ +++D KL + Sbjct: 243 WVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLKSDEEILKTFYTVDRIQVKDGKLYWTV 302 Query: 242 ----VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 P L G + + NG+ V GR+ITA ++ + + ++ IE+ + G + Sbjct: 303 AEAGTPTHLLGAKPAHAVVHNGQEIVHSGRKITASVLKAIREAKLEQIEIDTTDLDGAMT 362 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 A D ID TGE++ AN EL+ D L K+ ++G +E F D G I+ TLR D Sbjct: 363 AADVIDTETGEVLLEANHELTPDKLHKIVEAGIPTVEVFFPERDDVGNIITNTLRRDSVR 422 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR---EEI 414 AL+EIYR +RPG+PPT + A +LFE +FF +YD S VGR+KFN L E Sbjct: 423 KPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYENAEETP 482 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 L+ D ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+ERA Sbjct: 483 LDHRTLTAGDFYSTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERA 542 Query: 475 VKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 +KE++S+ ++ T MP D+INAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 543 IKEKMSVYQEMSTAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSAL 602 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS +A+ NEYGF+E+PYR+ Sbjct: 603 GPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRR 662 Query: 594 VTDGVVTDEI------------------------------------------HYLSAIEE 611 V DG V D + YLSA EE Sbjct: 663 VRDGQVLDFVAVTNAGESGLRVGDYLEKAEALKLNDKLRAEKKRIIEFEPFSFYLSAWEE 722 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + IAQAN LDE H VEDLV R +G L +R++VDY+DVS +Q+VSV ASL+PFL Sbjct: 723 DRHTIAQANVKLDENKHIVEDLVNARRQGNFVLVNREEVDYVDVSPKQLVSVAASLVPFL 782 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMGANMQRQ+VP L ++ PLVGTGME A DSG +A+R GVV VD+ R Sbjct: 783 EHDDANRALMGANMQRQSVPLLVSEAPLVGTGMEGVTARDSGAVILARRNGVVDSVDSER 842 Query: 732 IVIKV---NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I+++V + E G DIY L K+ RSNQNTCINQ P V G+ V +G V+ADGP Sbjct: 843 IIVRVEGEHHPTQLSREVGSDIYQLIKFKRSNQNTCINQKPIVRKGDRVLKGQVIADGPC 902 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 T+ GEL LG+N+ VAFMPW GYNFED+IL+SE++V+ED +T++HI+E +RDTKLGPE Sbjct: 903 TEQGELGLGRNVLVAFMPWRGYNFEDAILISEKLVKEDYYTSVHIEEFEIEARDTKLGPE 962 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 EIT DIPNV E AL LDESGI+ IGA+V DILVGKVTPKGETQLTPEEKLLRAIFGE Sbjct: 963 EITRDIPNVSEHALRDLDESGIIRIGAKVKHNDILVGKVTPKGETQLTPEEKLLRAIFGE 1022 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 KA DV+D+SL P G+ GTV+DV++F+R G EKD+RA +IE Q+ + +K+L +E++IL Sbjct: 1023 KAGDVRDASLTCPPGIEGTVVDVRIFSRKGQEKDERAKQIEAEQVAKLEKNLEDEIRILT 1082 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWL----------------------ELGLTDEE 1006 R+ A+L V A+ D+ R L D Sbjct: 1083 DERLKRLEAILGGKVVLADLHDERTNKRLLVKDAVLDRDAIERISTRNLKRIRYADKDPR 1142 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q++++ E K + K+ +GD+L+PGV+K+VK+Y+A+KR++ GDKM Sbjct: 1143 VNEQIDEIEEMTSRQIDVLRKITNERIAKLQKGDELSPGVIKMVKIYIAMKRKLSVGDKM 1202 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKGVI++I P EDMPY +GTPV+IVLNPLGVPSRMN+GQILETHLG AA +G Sbjct: 1203 AGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHDLGV 1262 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 ++ A++KQ Q+ +RE I+ + A + Q ++ DE+++R+ + +G+ T V Sbjct: 1263 QVAAIVKQHQDANVIREVIKERFKGTAVINQLIE---LEDEQLLRVGAGMARGIWFGTAV 1319 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 FDGAKE EIK LL+ LPTSG+ +L+DG TGE FE+PVTVG++YMLKL+HLVDDK+HAR Sbjct: 1320 FDGAKEEEIKALLESAGLPTSGKTKLFDGMTGEAFEQPVTVGFIYMLKLSHLVDDKIHAR 1379 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 S G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+Y+ Sbjct: 1380 SIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYE 1439 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 AIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1472 >UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 Tax=cellular organisms RepID=RPOB_ACIBL Length = 1489 Score = 1561 bits (4041), Expect = 0.0, Method: Composition-based stats. Identities = 733/1475 (49%), Positives = 963/1475 (65%), Gaps = 154/1475 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYS-- 63 R R+DF K P + +P L+ +Q S+ +F++ D GL+A F+SVFPI + Sbjct: 9 RNRQDFSKIPATIQIPNLIEVQKRSYDRFLQMDLLPSERDDAGLQAVFQSVFPITDFRNV 68 Query: 64 ----------GNSELQY------------------------------------------- 70 GN E + Sbjct: 69 SQLEFVDYAIGNWECKCGHLKGLHHLRTTCKNCGATVVTDPFHPGDVLCHKCGTFNANTP 128 Query: 71 -VSYRLGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYER--EAPEGTVKDIKEQEV 122 + G+P +DV EC+ RG+TYSAPL+V +RL I+++ E T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDVAECEERGMTYSAPLKVTMRLTIFDKDPETNNRTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G++PLMT NGTF+INGTERVIVSQLHRSPGVFF++ ++ + + +IIPYRGS Sbjct: 189 FFGDVPLMTQNGTFIINGTERVIVSQLHRSPGVFFET------ANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL T E IL F+ ++D KL L Sbjct: 243 WVEFEYDQKNILYVRIDRKRKFLGTIFLRALGLRTDEDILRTFYTVDRIAVKDKKLYWTL 302 Query: 242 VP-----ERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 P L G S I NG+ GR++TA +++++K + +E+ + + G Sbjct: 303 EPGIERPTNLVGLKLSHAIKAKNGEEVAHSGRKVTASVLKEIQKHKISELEIELGDLEGA 362 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 VA D ID +TGE++ AN EL+ D L+K+ +G + F D G IS TLR D Sbjct: 363 YVASDVIDTNTGEVLLEANQELTADKLSKMIDAGIGEVNVFFPERDDVGTVISATLRRDS 422 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR---E 412 AL+EIYR +RPG+PPT + A +LF +FF +YD S VGR+KFN L Sbjct: 423 VKTPQEALIEIYRKLRPGDPPTLDTATALFHGMFFDARKYDFSRVGRLKFNIKLFDRQDP 482 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L DD ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+E Sbjct: 483 TGLDKRTLDPDDFYHTIRYLLKLRRNLGAVDDIDHLGNRRVRAVGELLENQFRIGLVRME 542 Query: 473 RAVKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 RA+KE++S+ ++ T MP D++NAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+S Sbjct: 543 RAIKEKMSVYQEMSTAMPHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLS 602 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 ALGPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS YA+ N+YGF+E+PY Sbjct: 603 ALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCYARINDYGFIESPY 662 Query: 592 RKVTDGVVTDEI------------------------------------------HYLSAI 609 R+V G V D + YLSA Sbjct: 663 RRVKGGRVIDYVQVTHAGDSDYRVGDKMEKSEAQKANEELRGRKKRGIELEPYSFYLSAW 722 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 EE + IAQAN+ LDE+G +LV R G L SRD +DY+DVS +Q+VSV ASL+P Sbjct: 723 EEDKWTIAQANAELDEKGKITSELVNARKAGNFVLISRDDIDYIDVSPKQLVSVAASLVP 782 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 FLEHDDANRALMGANMQRQ+VP LRA+ P+VGTGME A DSG +A+R G++ VD+ Sbjct: 783 FLEHDDANRALMGANMQRQSVPLLRAEAPIVGTGMEGVTARDSGAVVLARRSGIIDSVDS 842 Query: 730 SRIVIKV---NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 R++++V + E G DIY LTK+ RSNQNTCINQ P V G+ V++G V+ADG Sbjct: 843 ERVIVRVEGEHHPMQLSREVGSDIYQLTKFKRSNQNTCINQKPIVKQGDHVKKGQVIADG 902 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 P TD GEL LG+N+ V+FMPW GYNFED+ILVSE++V+ED +T++HI+E +RDTKLG Sbjct: 903 PCTDHGELGLGRNVLVSFMPWRGYNFEDAILVSEKLVKEDYYTSVHIEEFEIEARDTKLG 962 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 PEEIT DIPNV E+AL LDESG++ IGA V GDILVGKVTPKGETQLTPEEKLLRAIF Sbjct: 963 PEEITRDIPNVSESALRDLDESGVIRIGAPVKAGDILVGKVTPKGETQLTPEEKLLRAIF 1022 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 GEKA DV+D+SL P G+ G V+DV++F+R G EKD+RA +IE Q+ + +K+L++E++I Sbjct: 1023 GEKAGDVRDASLTCPPGIEGVVVDVKIFSRKGQEKDERAKQIEGTQIAKLEKNLADEIRI 1082 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL----------------------ELGLTD 1004 L R+ +L A V+A+ D+ R L + D Sbjct: 1083 LTDERLKRLEGLLGAKVVQADLHDERTNKRLLTKDAVLDRETIERISTRNLKRIKYADKD 1142 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 Q++++ E K + K K+ +GD+L PGV+K+VKVY+A+KR++ GD Sbjct: 1143 PRVNEQIDEIEEMTSRQIDVLRKIVREKIEKLQKGDELPPGVIKLVKVYIAMKRKLSVGD 1202 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGVI++I P EDMPY E+GTPV+IVLNPLGVPSRMN+GQILETHLG A + Sbjct: 1203 KMAGRHGNKGVIARILPEEDMPYLEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAGHEL 1262 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G KI + + E ++R+ +++ + A V ++ DE ++++A+ ++ G+ + Sbjct: 1263 GKKIAEFMVENSEAGQVRKHLKQLFKDTAFVDH---VTELDDEMLLKVAKGMQDGVFFGS 1319 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 VFDG+ EAEIK LL LPTSG+ LYDG TG++FE+PVTVGY+YMLKL+HLVDDK+H Sbjct: 1320 AVFDGSTEAEIKSLLDQAGLPTSGKTFLYDGMTGDRFEQPVTVGYIYMLKLSHLVDDKIH 1379 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+ Sbjct: 1380 ARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKI 1439 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y+ IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 YEAIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1474 >UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFV8_THEYD Length = 1312 Score = 1545 bits (3999), Expect = 0.0, Method: Composition-based stats. Identities = 710/1358 (52%), Positives = 960/1358 (70%), Gaps = 84/1358 (6%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGN 65 R R +FGK P +++VPYLL Q SF KF+++D GL++A SVFPI Y+G Sbjct: 6 RERINFGKVPPLVEVPYLLEFQRKSFDKFLQKDIPPEERADEGLQSALNSVFPISDYNGT 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT-VKDIKEQEVYM 124 + ++++SY +GEP EC ++G+TYS P+++K+RL I++++ +K+ +EQEV++ Sbjct: 66 TTIEFISYSVGEPKLTPYECMVKGLTYSVPIKMKVRLNIWDKDEEGRKFLKESREQEVFL 125 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G++P+MT+ G+F+ING ERVIVSQLHRSPGV+F D+ K+ SG+ LY+ARIIP RGSWL Sbjct: 126 GDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPVRGSWL 185 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 DFEFD KD L+VRID+R+KLPATI+L+AL YT E +L +F+ I+D +V + Sbjct: 186 DFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLRIFYPIEEIRIKDETTYTRVVSD 245 Query: 245 RLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 L G DI + V++G +IT ++++++ ++ I + I G++ D + Sbjct: 246 ILTGVRTKVDICSADGKDIIVKEGSKITRYSLKKMKELGIQEIPISKSEIIGRITLSDIV 305 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 D TGE+I +N E++ + ++ + +++E LF +++++ P + ETL D ++ A Sbjct: 306 DPETGEVIVDSNKEITEESFHRIISARIQKLELLFIDNINYLPSLRETLLTDKVENKKHA 365 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L EIY+ +RPGEP T EAAE LF LFF RYDLS+VGR+K N+ L + +L+ Sbjct: 366 LREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSSVGRLKLNQKLGLDIPLDVRVLTD 425 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 DII+++K L+++R GKGEVDDIDHLGNRR+R VGE+ ENQFR+GLVR+ERA++E++++ Sbjct: 426 KDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIREKMTIT 485 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 D++T MP D+IN KP+ AAVKEFF +SQLSQFMDQ NPLSEITHKRR+SALGPGGLTRER Sbjct: 486 DVETAMPHDVINTKPVMAAVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRER 545 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 AGFEVRDVHPTHYGR+CPIETPEGPNIGLI SL+ YA+ N++GF+E+PYRKV +G VT++ Sbjct: 546 AGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINDFGFIESPYRKVVNGKVTND 605 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 +H+LSA+E NYVIA+A + +DEEG+ + + V+ R KG+ + SR++V+YMDVS +Q+VS Sbjct: 606 VHFLSALESENYVIAEATTPVDEEGNIIGETVSARVKGDFKMVSREEVEYMDVSPKQIVS 665 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 + ASLIPFLE+DDANRALMG+NMQRQAVP + + P+VGTGME A DSG VAKR G Sbjct: 666 LSASLIPFLENDDANRALMGSNMQRQAVPLIHTEAPIVGTGMELYAARDSGWLVVAKRAG 725 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 +V+ VD+ RIVI+V E+ G+DIYNL K+ +SNQ TC+ Q P V +G+ VERG + Sbjct: 726 IVENVDSRRIVIRVTEEG-----GGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVERGTI 780 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 LADGP D GELALG+N+ VAFMPW GYNFED+ILVSER+V+ED +T+IHI E RD Sbjct: 781 LADGPCMDNGELALGRNVLVAFMPWGGYNFEDAILVSERLVKEDVYTSIHIDEFEIECRD 840 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 TKLGPEEIT +IPNV E L LDE GI+ IGA+V GDILVGKVTPKGE LTPEEKLL Sbjct: 841 TKLGPEEITREIPNVNEELLKNLDEDGIIRIGAKVKAGDILVGKVTPKGERVLTPEEKLL 900 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE 962 AIFGEKA DVK+S L VP G+ G VIDV++ TR G EK +RA IEE ++K+ ++D + Sbjct: 901 YAIFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRANAIEEEEIKRIERDRED 960 Query: 963 ELQILEAGLFSRIRAVL------------------VAGGVEAEKLDKLPRDRWLELGLTD 1004 E++IL+ SRIR +L + + ++ L ++ L+L + D Sbjct: 961 EIRILKETKASRIRKILKGKIILEDVKKGEKIICPKGKALTEKVVNLLDVNQLLKLKVED 1020 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + + ++ ++ ++ ++ + K K +I +GD+L PGV +IVKVY+A+KR+IQ GD Sbjct: 1021 PDVKAEVSRVNKEVEQNIKQIYAKYNEKIERIKKGDELPPGVNQIVKVYIAMKRKIQVGD 1080 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGV+S I P EDMPY E+GTPVDIVLNPLGVPSRMN+GQILETHLG+AAK + Sbjct: 1081 KMAGRHGNKGVVSMILPEEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKAL 1140 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G + + + + + +++E ++ +G +V L Sbjct: 1141 GLYVASPVFEGAKEDEIKEMFRK---VGYPTTGQVTL----------------------- 1174 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 G+ GE FERPVTVGYMYMLKL+HLV DK+H Sbjct: 1175 ---------------------YDGKT-------GEPFERPVTVGYMYMLKLHHLVADKIH 1206 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARS G YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAYTLQE LTVKSDD+ GRT+M Sbjct: 1207 ARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDITGRTRM 1266 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 Y+ IV G+ +EPG+PESFNVL+KE++SL ++++L ++ Sbjct: 1267 YEAIVKGHPVLEPGVPESFNVLIKELQSLCLDVDLLEK 1304 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 1421 bits (3679), Expect = 0.0, Method: Composition-based stats. Identities = 632/1379 (45%), Positives = 891/1379 (64%), Gaps = 48/1379 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R+R DF K P L+VP LL +Q DS+ F+ + G+E F+S+FPIQ Sbjct: 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQ 60 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT---VKDI 117 L+Y G+ + V+E RG+TYS PL++K+RL+++E++ G +KDI Sbjct: 61 DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI 120 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ +++ EIPLMT+ +F+ING ERV+V+QLHRSPGV F ++ T + K++Y +II Sbjct: 121 KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLN-KLIYTGQII 179 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 P RGSWL FE+D KD L+ RI++RRK+P TI+ RA++Y + I+ +F+ V ++K Sbjct: 180 PDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKY 239 Query: 238 QMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + + FD+ + GKV + G+++T+R I++L+++ ++ +E P++ + + Sbjct: 240 LIPF-ASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRH 298 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ + E++ +L + L K+ G + + L H I ++ D Sbjct: 299 LAEPVMVGK--EVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSE 356 Query: 357 N----------DRLSAL--VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 + D +AL + I+++M+PG+P T E A+ + LFF +RYDL+ VGRMK Sbjct: 357 SLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMK 416 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + L+ +DII +K L+ I+N +G++DD DHLGNRRIR+VGE+ N+ Sbjct: 417 MNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANEL 476 Query: 465 RVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 GLV++++ +K++L+ G D+LMP D++N+K I++ + EFF QLSQFMDQ NPLS Sbjct: 477 HSGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLS 536 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALG GGL ++R GFE RDVHPTHYGR+CPIETPEG NIGLIN+LS + + N Sbjct: 537 EVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVN 596 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 + GF+E PY+KV DG V E YL+AI+E +++IA A++ +DEEG+ + DL+ R +GE Sbjct: 597 DLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEI 656 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 L + +V MD+S+ +V V ASLIPFLEHDDANRALMG NMQRQAVP LR D P+VGT Sbjct: 657 VLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPIVGT 716 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 G+E+ +A DS A R GVV+ +D+ I I E EA ID Y+L K R+NQN Sbjct: 717 GIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKE----EAYIDAYSLQKNLRTNQN 772 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 T NQ+P V +G+ VE G ++ADGPS D GELALG+N+RVAFMPWNGYNFED+I+VSER+ Sbjct: 773 TSFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERI 832 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++D FT+ HI E +R+ K G EE TADIP+V E AL+ LDESGIV +G V+ G I Sbjct: 833 TKDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMI 892 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 LVGK +PKGE + TPEE+LLRAIFG+KA V + SL P + GTVIDV+VFT+ G EKD Sbjct: 893 LVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKD 952 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA---------GGVEAEKLDKLP 993 R L E + + + + L +L R+ ++L G + ++ D++P Sbjct: 953 ARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIP 1012 Query: 994 RDRWLEL---------GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ + +E QN E + E K ++ E K + + D L Sbjct: 1013 KEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPN 1072 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV+K VK+Y+A KR+++ GDKMAGRHGNKG++S I P+ DMPY +G PVDIVLNPLGVP Sbjct: 1073 GVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVP 1132 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA----YDLGADVRQKVD 1160 SRMNIGQILE HLG+ K G +I +ML+ + + + G D Sbjct: 1133 SRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINGKDPLTIHV 1192 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 L + SDEE++ A++ KG+ +A PVF+G + + +L +L + G++ LYDGRTGE+ Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 V VGYMYM+KL+HLVD+K+HARSTG YSLVT QP+GGKA FGGQRFGEMEVWALEA Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAA+TL+EMLT+KSDD+ GR Y+ I G E +PE+F VL KE++SL ++I + Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINI 1371 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1420 bits (3677), Expect = 0.0, Method: Composition-based stats. Identities = 664/1421 (46%), Positives = 899/1421 (63%), Gaps = 94/1421 (6%) Query: 12 RKDFGKRPQVLD-VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 R + + + D + L+ +Q +S++ F + G LE+ FRSVFPI + +++ Sbjct: 16 RISYSRSIDLKDSLLDLVKVQKESYKSFTPGN-HGNERLESIFRSVFPINDPLHRATIEF 74 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK------------ 118 +S R+ P +D EC RG+T+SA + +RLVI + K IK Sbjct: 75 ISCRIDNPKYDESECIKRGITFSARVIASIRLVIMQDGISLDEYKSIKGSGDHSKLSTII 134 Query: 119 ----EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 EQEV+ E+P+MTD GTF+ING E+VIVSQ+HRSPGVFFDSDKGKT++SGK++Y+A Sbjct: 135 KFIGEQEVHFCELPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKLIYSA 194 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLD EFD KD L+ RIDR+RKLP +++L+AL + ILD F+EK+ + Sbjct: 195 RVIPYRGSWLDIEFDVKDLLYFRIDRKRKLPISVLLKALGLSNSDILDRFYEKIKYIKYK 254 Query: 235 NKLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 N ++ VP++ +G FD+ + G V + RIT+R ++L D++K VP + I Sbjct: 255 NSWKVPFVPDKFKGVRLPFDLMDVEGNVLFKANVRITSRLAKKLHDDELKEYLVPFDSIC 314 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G +A+D ID + I +A + ++ + KL I L ++L GPYI TL + Sbjct: 315 GLFLAEDLIDSVSSTKILSAGESIKIEDVKKLELLSIGEISVLNIDNLSVGPYILNTLFL 374 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D AL EIY+++RPGE P E E F NLFF+ + YDLS +GR+K N L + Sbjct: 375 DENMSYQDALYEIYKVLRPGEVPVLEIVEEFFHNLFFNPEYYDLSNIGRLKLNSYLGLDY 434 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E +L+ +DII++++K++ +R+G+G VDDIDHLGNRR+RSVGE ENQFR GL+++ER Sbjct: 435 DEDLTVLTHEDIIEIVRKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRAGLLKLER 494 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AV + +S LD + D IN K ++ +++FF SSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 495 AVIDSMSTSSLDKVSSPDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHKRRLSAL 554 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTR+RAGFEVRDVHPTHYGR+CPIETPEG NIGLINSL++YA+ N+YGF+E+PYRK Sbjct: 555 GPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARVNKYGFIESPYRK 614 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V + V TD+I YLSAI+EG Y IA A++ LD F++D++ CR G + S DQV Y+ Sbjct: 615 VINRVATDQIEYLSAIDEGLYYIADASAKLDNNNRFIDDMLYCRYAGNFVMVSSDQVSYI 674 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DVS +QV+SV ASLIPFLE+DDANRALMG+NMQRQAVP L+ PLVGTG+E VA SG Sbjct: 675 DVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVGTGIESFVASGSG 734 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 +AKR G+V D++ IVI+ ++E G+DIY+L K+ RSN NTCINQ P V + Sbjct: 735 AVVLAKRDGIVDSSDSNSIVIRAFDEERVN-YLGVDIYHLKKFQRSNHNTCINQKPLVRI 793 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V+ GDV+ADGP+ + GELALGQN+ VAFM W GYNFEDSI++S +V++D FT+IHI Sbjct: 794 GDYVKEGDVIADGPAINSGELALGQNLLVAFMSWQGYNFEDSIIISSEIVKKDLFTSIHI 853 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E CV DT LG E+IT IP V E L LD SGIV IG V G ILVGK+TPK Sbjct: 854 EEFECVVHDTPLGSEKITRAIPGVNEENLYHLDNSGIVKIGTRVGPGYILVGKITPKPSL 913 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 L PE KLL IFGEK+ D DSSL V GTVIDVQVFTR GVE+++RAL I++ ++ Sbjct: 914 LLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALLIKQKEM 973 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLV-AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +K+ + + + ++ +LV + + EKLD + R++W +GL + Q++ Sbjct: 974 NDLEKERDYIINVASEYFYDELKKLLVHSCSQDQEKLDAIEREQWWGIGLKNRSISEQVK 1033 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA----------------- 1055 L + +D+ + + K K+ +G DL GVL VKV++A Sbjct: 1034 NLKKDFDKKVSNTIAQFKQKVEKLDEGYDLPQGVLMSVKVFIAVKHSLQPGDKMAGRHGN 1093 Query: 1056 ------------------------------VKRRIQPGD-----------KMAGRHGNKG 1074 V R+ G K+ R GN Sbjct: 1094 KGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILETHVGWACKKLGERVGN-- 1151 Query: 1075 VISKINPIE-DMPY------DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI-GD 1126 ++ +IN I D D N V + +I ++ + + KG+ D Sbjct: 1152 ILDEINKINSDFCKEIRSLDDNNFAKFAAVYFDNKKTEEVRDDEITDSLVNIPNKGLLND 1211 Query: 1127 KINAMLKQQQEVAK-----LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 ++NA+++ K LR F+ Y G+DV ++ S+ ++ A LR G+P Sbjct: 1212 ELNALVENYLNSCKSAYDNLRSFLIEVYSCGSDVSICNNIRDISNSNLIEFAHKLRNGIP 1271 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +A PVF+G K+ I +L L L SGQ YDGRTGE+F+R VTVGYMYMLKL+HLVDD Sbjct: 1272 VAAPVFEGPKDKNIIKLFTLAGLDPSGQTEAYDGRTGEKFDRKVTVGYMYMLKLHHLVDD 1331 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARS G YSLVTQQPLGGK+ FGGQRFGEME WAL+AYGAAYTLQEMLTVKSDD+NGR Sbjct: 1332 KIHARSVGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDINGR 1391 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K+Y++I+ G+ E G PESFNV++KE+RSL +N+ L+ Sbjct: 1392 VKIYESIIKGDSNFECGTPESFNVMIKELRSLCLNVALKQN 1432 >UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Tax=Chlamydiae/Verrucomicrobia group RepID=RPOB_PARUW Length = 1254 Score = 1371 bits (3548), Expect = 0.0, Method: Composition-based stats. Identities = 618/1366 (45%), Positives = 849/1366 (62%), Gaps = 161/1366 (11%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGNSE 67 R+ F + +++D+P L+ IQ+ S+ +F++ D GL+ F +FPI+SY + Sbjct: 8 RESFNDKEEIIDLPNLIEIQIKSYNQFLQADKFPDERENIGLQEVFTEIFPIKSYDEKTI 67 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++SY LG P ++ +EC RG+TY+ L+VK RL IKE+EVYMG I Sbjct: 68 LEFLSYNLGVPKYNPEECIRRGITYNVTLKVKFRLTDET---------GIKEEEVYMGTI 118 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF++NG ERV+VSQLHRSPG+ F+ ++ HS G V+Y+ RIIPYRGSWL+ Sbjct: 119 PVMTDKGTFIVNGAERVVVSQLHRSPGICFEQER---HSRGNVIYSFRIIPYRGSWLEGA 175 Query: 188 FDPKDNLFVRIDRR---RKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVP 243 FD D + + IDR+ RK+ AT +RAL Y+ I++ FF ++I++ Sbjct: 176 FDTNDLIHIYIDRKKRRRKILATTFIRALGYSSNSDIIEEFFTTRKYKIKN--------- 226 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 EK+ KL+ GK++A+D +D Sbjct: 227 ----------------------------------EKEFAKLV--------GKILAQDVVD 244 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 E +G + A+ +L+ +L ++ +G I D D + + L DPT+ SAL Sbjct: 245 EESGLVFGKASEKLTTAMLKRIVDAGIDVIRI--AEDADETSPVIKMLAKDPTDSYESAL 302 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL---REEIEGSGIL 420 + YR +RPGEP T A S LFF RY+L VGR K N L +E + L Sbjct: 303 KDFYRKIRPGEPATLSNARSAIMRLFFDPKRYNLGRVGRYKLNSKLGCEINDEKLQTVTL 362 Query: 421 SKDDIIDVMKKLIDIRNGKGE--VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 K+D+I +K LI +++G E +DDIDHLGNRR+RSVGE+ +NQ R+GL R+E+ ++ER Sbjct: 363 DKEDVIGALKYLIMLKSGSEEASIDDIDHLGNRRVRSVGELIQNQCRIGLARMEKIIRER 422 Query: 479 LSLGDL--DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ++L D DTL P +++AK +S +K+FFG SQLSQFMDQ NP++E+THKRR+S+LGPG Sbjct: 423 MNLFDFSSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLSSLGPG 482 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI+SLS +A+ NE+GF+ETPYR V + Sbjct: 483 GLNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLISSLSSFAKINEFGFIETPYRIVRE 542 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 GVVTDEI Y++A +E VIAQA++ LDE F E + R KGE V +MDVS Sbjct: 543 GVVTDEIEYMTADQEEQCVIAQASAPLDEYHMFAEPICWARYKGEQFETDTKNVTHMDVS 602 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 +Q+VS+ LIPFLEHDDANRALMG+NMQRQ VP L+ P+VGTG+E A DSG Sbjct: 603 PKQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLKPTAPIVGTGLEARAARDSGAVL 662 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +A GVV YVD +IVI +++ + Y L K+ RSN TCINQ P +G+ Sbjct: 663 IAHEDGVVDYVDGLKIVISPDDNRLEK-----RTYLLKKFIRSNAGTCINQRPLCHVGDK 717 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 ++ GDV+ADGP+TD GE+ALG+N+ VAFMPW GYN+ED+I++SE++++ED +T+++I+E Sbjct: 718 IKAGDVIADGPATDKGEVALGRNVLVAFMPWFGYNYEDAIIISEKLLREDYYTSLYIEEF 777 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +RDTKLG EEIT DIPNV E L L++ GI+ IGAEV GD LVGK+TPK ET+L Sbjct: 778 ELTARDTKLGKEEITRDIPNVSEETLRNLNDDGIIRIGAEVKPGDTLVGKITPKSETELA 837 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALEIEEMQLKQ 955 PEE+LLRAIFG+KASDVKD+SL P G G V+DV+VF+ RD + K L E +LK Sbjct: 838 PEERLLRAIFGDKASDVKDASLIAPPGTEGVVMDVKVFSRRDRLSKTDDELVEEASKLKD 897 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGG--------------------VEAEKLDKLPRD 995 +++ L R+ A+L+ + + ++ L ++ Sbjct: 898 IQREYKSNQAQLRTEKHERVGALLLNETAPGNIVHRRTAEIIVDEGDLITQDLIEALEKE 957 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DLAPGVLKIVKVYL 1054 +L + + + L Q+ Y+ E + + + + +GD DL PGV++ VKVY+ Sbjct: 958 SVEDLLMPENDIYTTLRQILHDYEIALQTVETQYKTQLEFMRKGDTDLDPGVIRQVKVYV 1017 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR++Q GDKMAGRHGNKGV+SKI P DMP+ G ++I+LNPLGVPSRMN+GQ+ E Sbjct: 1018 ASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLSTGQTIEIILNPLGVPSRMNMGQLFE 1077 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 THLG+AAK G + + + + K+ E ++ Sbjct: 1078 THLGIAAKHTGITVKSPVFEGFPEEKIWEMMK---------------------------- 1109 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + G+P F LYDG +GE+F+ V VGY+YMLK Sbjct: 1110 --KAGLPEDGKFF------------------------LYDGCSGERFDNSVVVGYIYMLK 1143 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L+HLV DK+HAR+ G YSLVTQQPLGGKAQ GGQRFGEMEVWA EAYGAA+ LQEMLTVK Sbjct: 1144 LSHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQEMLTVK 1203 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDDV GRT++Y++IV G + ++ G PESFNVL+KE++ LG+N+ E Sbjct: 1204 SDDVAGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLNVYTE 1249 >UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Tax=Bacteroidetes RepID=RPOB_SALRD Length = 1287 Score = 1365 bits (3534), Expect = 0.0, Method: Composition-based stats. Identities = 603/1362 (44%), Positives = 831/1362 (61%), Gaps = 128/1362 (9%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 R+ F P+V D P L +QL +F F++ D GL+A F FPI+ Sbjct: 21 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 80 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L++V+Y L P V+EC +G+TYS PL+ LRL + E + EQEVY+G + Sbjct: 81 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLT-SKEEEGGEEAIEAIEQEVYLGTL 139 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQLHRSPG FF+ + HS+G L++AR+IP+RGSW++F Sbjct: 140 PFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKE---IHSNGTELFSARVIPFRGSWMEFS 196 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERL 246 D +D L+ +DR++K+P T +LRAL ++ E+I+ +F +I D + E L Sbjct: 197 TDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDE----DEFEEHL 252 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES- 305 E A+ V++ + +DE Sbjct: 253 GRELATSVTIEKTIEIVDED-------------------------------TGEVVDEEM 281 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG---PYISETLRVDPTNDRLSA 362 E++ A EL +L + R+ + + D + ETL+ D ++ A Sbjct: 282 EREVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLVETLQKDSSHTEEEA 341 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L IY +R E P ++A E LFF+EDRYDL VGR + N L + +L+K Sbjct: 342 LEVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTDEKVLTK 401 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 +D++ ++++LI ++NG+ DDIDHL NRR++SVGE +QF +GL R+ R +KER++L Sbjct: 402 EDVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIKERMNLR 461 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 D D P+D++NA+ I + + FFG++QLSQFMDQ N L+E+THKRR+SALGPGGLTRER Sbjct: 462 DADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPGGLTRER 521 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 AGFEVRDVH THYGR+CPIETPEGPNIGL+ SL V++ N++GFLETPYR V DG VTD Sbjct: 522 AGFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVEDGRVTDR 581 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 + YLSA EE +AQAN+ + ++GHF D V CR +G+ + ++VDYMDV+ Q+VS Sbjct: 582 VEYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVAPNQIVS 641 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 ASL+PFL H+DANRALMG+NMQRQ VP LR+D P+VGTG+E VA DS VA+ G Sbjct: 642 PSASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCVVAEGEG 701 Query: 723 VVQYVDASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 VV+YVDA R+V++ +E++ + Y LTK+ R+NQ TC+NQ P V G+ VE Sbjct: 702 VVEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPIVQAGDRVEE 761 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 G+VL DG + + GELALG+N+ AFMPW+GYN+ED+I++SER+V +D +T++HI+E Sbjct: 762 GEVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHIEEFEHE 821 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 RDTK G EE+T +IPNV E A LDE GIV +GAE+T GDI+VGK+TPKGET TPEE Sbjct: 822 VRDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGETDPTPEE 881 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 KLLRAIFG+KA DVKD+SL+ G+ G VID ++F+R E D + ++EE +L+ + Sbjct: 882 KLLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRR--ELDPASKKMEEKRLENIES 939 Query: 959 DLSEELQILEA----------------GLFSRIRAVLVAGGVEAEK--LDKL-PRDRWLE 999 D +L L GL R VL+ G + E+ D++ P D Sbjct: 940 DHERKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDPSDLSTR 999 Query: 1000 LGLT-DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 T DEE +Q+ L Y + + E + ++ ++ GD+L GV+++ KVY+A K+ Sbjct: 1000 AEFTEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARKK 1059 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 +I+ GDKMAGRHGNKGVI+KI P+EDMP+ ++GTPVD+VLNPLGVPSRMN+GQI ET LG Sbjct: 1060 KIEVGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYETLLG 1119 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 A +G K + + + + +++A Q D T Sbjct: 1120 WAGDRLGVKYATPIFDGASLEDVGDELEKAGLPRDGKVQLYDGRT--------------- 1164 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 P + + G +YM+KL HL Sbjct: 1165 ------------------------GEPFDEKTTV---------------GQIYMMKLEHL 1185 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 V+DKMHARS G YSL+TQQPLGGKAQFGGQR GEMEVWAL AYGA+ TLQEMLT KSDDV Sbjct: 1186 VEDKMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLTFKSDDV 1245 Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 GR++ Y++IV G + PG+PESFNVL++E++ LG+ + L+ Sbjct: 1246 EGRSEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1287 >UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax=Bacteroidetes RepID=RPOB_CYTH3 Length = 1291 Score = 1361 bits (3523), Expect = 0.0, Method: Composition-based stats. Identities = 615/1382 (44%), Positives = 855/1382 (61%), Gaps = 147/1382 (10%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSG 64 + +RK F K ++ P L IQ+ SF+ F + D + GL F FPI Sbjct: 7 QNLRKSFAKTRSTVEYPDFLDIQVRSFKDFFQIDTPAENRFKEGLYKVFAENFPISDSRD 66 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 N L ++ Y + P ++V EC RG+TY+ PL+ KLRL +++ + EQEV++ Sbjct: 67 NFILDFIDYNIDTPKYNVDECIDRGLTYAVPLKAKLRLTCNDKDNEDFQT---IEQEVFL 123 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G IP MT+ G+FVING ERVIVSQLHRSPGVFF K H++G LY+AR+IP++GSW+ Sbjct: 124 GNIPYMTERGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARVIPFKGSWI 180 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +F D + +F IDR++K P T +LRA+ Y + + ILDLF E ++ + Sbjct: 181 EFATDVNNVMFAYIDRKKKFPVTTLLRAIGYGSDKDILDLFGLSEEVEATKANIKKAI-- 238 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 GR++ AR +R +D V + G+VV+ D Sbjct: 239 ----------------------GRKLAARVLRTWTEDFV-------DEDTGEVVSID--- 266 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY--ISETLRVDPTNDRLS 361 E++ + + + + + +SG K I L D++ Y I TL+ D +N Sbjct: 267 --RNEVLLERDSIIKEEDINIIVESGSKSI-ILHREDVNIADYTIIYNTLQKDNSNSEKE 323 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 A+ +IYR +R + P + A + NLFFS+ RYDL VGR + N+ L +L+ Sbjct: 324 AVEQIYRQLRNTDAPDEQTARDIIHNLFFSDKRYDLGEVGRYRINKKLGSGMGSEVKVLT 383 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 K+DII+++K LI + N + VDDIDHL NRR+R++GE +QF VGL R+ R +KER+++ Sbjct: 384 KEDIINIVKYLIGLINSRAVVDDIDHLSNRRVRTMGEQLYSQFSVGLARMARTIKERMNV 443 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541 D + P D+INA+ +S+ + FFG++QLSQFMDQ NPL+EITHKRR+SALGPGGL+RE Sbjct: 444 RDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRMSALGPGGLSRE 503 Query: 542 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV--V 599 RAGFEVRDVH THYGR+C IETPEGPNIGLI+SL V+A+ N GF+ETPYRKV DG+ V Sbjct: 504 RAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMGFIETPYRKVIDGIVDV 563 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 ++ +L+A EE IAQAN+ D+ G+F+ D + R +G+ + + D+VD +D++T Q Sbjct: 564 KNQPVFLTAEEEDGAHIAQANAMYDDNGNFISDRIKARYEGDFPVIAPDKVDLIDIATNQ 623 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VSV ASLIPFLEHDDANRALMG+NMQRQAVP LR + P+VGTG+ER VA+DS +A+ Sbjct: 624 IVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLERRVAMDSRTLLIAE 683 Query: 720 RGGVVQYVDASRIVIK---VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 GVV++VDA+ I ++ +ED + ++ I Y+L K+ R+NQ+TCIN P + GE Sbjct: 684 ADGVVEFVDANEIKMRYDLTDEDRLVSFDSDIITYSLIKFRRTNQDTCINLKPVIQHGER 743 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 V++G VL +G +TD GELALG+N+ VAFMPW GYNFED+I++SE+VV++D FT+IHI+E Sbjct: 744 VKKGQVLCEGYATDKGELALGRNLMVAFMPWQGYNFEDAIVISEKVVRDDIFTSIHIEEF 803 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 RDTK G EE+T++IPNV E A+ LDE+GI+ GAE+ GDIL+GK+TPKGE+ T Sbjct: 804 ELEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRTGAEIKEGDILIGKITPKGESDPT 863 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD---KRALEIEEMQL 953 PEEKLLRAIFG+KA DVKD+S++ P + G VID ++F+R +KD K ++E ++ Sbjct: 864 PEEKLLRAIFGDKAGDVKDASMKAPPSLRGVVIDTKLFSRPKKDKDLRIKSKKQVETIKG 923 Query: 954 KQAKKDLSEELQILE-----------AGLFSRIRAVLVAGGVEAEKL--------DKLPR 994 K +K L+ Q++E G+ + +++ GV+ + DK P Sbjct: 924 KYSKDLLALREQMIEKLAALLDGQTSQGVKHKFGDEVISKGVKFSRKNIEANVFPDKNPY 983 Query: 995 ----------------DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 D ++ +D++ + +L + Y ++E K + +R + Sbjct: 984 RDESNYNVQEEANLLGDLIIDNWTSDKKINENVLRLVKNYLTKRNETAGKFKRERFTLEV 1043 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L G++++ KVY+A KR+++ GDKMAGRHGNKGV+++I EDMP+ E+GTPVDIVL Sbjct: 1044 GDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTPVDIVL 1103 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQI ET LG+A K +G K + Sbjct: 1104 NPLGVPSRMNIGQIYETLLGLAGKKLGRKYATPIFDGA---------------------- 1141 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 S+EEV+ + T + DG +G Sbjct: 1142 ------SEEEVINELRDAGLPTIGRTKLVDGL--------------------------SG 1169 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 F++PVTVG +YM+KL HLVDDKMHARS G YSL+TQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 1170 NPFDQPVTVGVIYMMKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAL 1229 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EA+GAA LQE+LTVKSDDV GR K Y+ IV G + P +PESFNVL+ E+R L + I Sbjct: 1230 EAFGAANILQEILTVKSDDVVGRAKTYECIVKGENLPRPNIPESFNVLVHELRGLALEIT 1289 Query: 1339 LE 1340 L Sbjct: 1290 LH 1291 >UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Tax=Bacteria RepID=RPOB_METI4 Length = 1289 Score = 1354 bits (3504), Expect = 0.0, Method: Composition-based stats. Identities = 626/1368 (45%), Positives = 844/1368 (61%), Gaps = 140/1368 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSY 62 +K R +FGK + L +P L+ Q S+ F++ Q GL F VFPI+SY Sbjct: 2 NEKIQRINFGKIREGLSLPNLIEHQTKSYADFLQLSVAPQERKAEGLHGVFLEVFPIESY 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 G +L+YV+Y +GE F +C G TY+APL V RL + +KE++V Sbjct: 62 DGKVKLEYVNYEIGESKFSPIDCLRDGKTYAAPLYVTFRL---------KDEEGVKEEKV 112 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 YMGE+P+MT G+F+ING ERVIV+QLHRSPG+ F+S HS+GK LY+ RIIP RGS Sbjct: 113 YMGELPMMTPQGSFIINGAERVIVNQLHRSPGICFESSF---HSNGKTLYSFRIIPDRGS 169 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+ FD D L+V +DRR+K F + L Sbjct: 170 WLEVAFDTNDLLYVYLDRRKK-----------------RRKFLITTLLRALAAALSGPSS 212 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 P G R +E+ ++ + + +A KV+ + Sbjct: 213 P------------------LGSGGDEEIIRLFYTVEELNLSE-GIDEDKVATKVLVSEVK 253 Query: 303 DESTGELICA-ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 D +++ A A ++ ++ +L G + I + D+ + + + L+ DPT D + Sbjct: 254 DPHNPDVVLARAYEPVTRSVVRQLLDVGIQSISVV---DVQYDDTLIKCLKKDPTKDPVE 310 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 AL EIYR +RPG+PPT A+ L + L RYDL VGR K N+ L + IL+ Sbjct: 311 ALKEIYRRLRPGDPPTESNAKLLLKRLLLDPKRYDLGRVGRYKLNQKLNIQVDPDIRILT 370 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 +D++ + LI +R G+G DDIDHLG+RR+R+VGE+ NQ R+GL R ER VKER++L Sbjct: 371 WEDLVAATRYLIKLRKGEGITDDIDHLGSRRVRTVGELVANQCRMGLARTERLVKERMTL 430 Query: 482 GDLDT--LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 D++T + PQ +IN K +SA +++FF SQLSQ MDQ NPLSE+THKRR+SALGPGGL+ Sbjct: 431 FDVNTEGMTPQKLINPKALSATIRDFFARSQLSQLMDQINPLSELTHKRRLSALGPGGLS 490 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI +++ Y++ N+YG LETPYRKV +G V Sbjct: 491 RERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSRFNDYGILETPYRKVLNGKV 550 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 T+EI Y +A +E NYVIA AN+ + E+G ++ V R + E R++V+YMDVS +Q Sbjct: 551 TNEIVYFTADQEENYVIAMANTAVSEDGTILDQRVAVRFRREFMEVEREKVEYMDVSPKQ 610 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VSV A LIPFLEHDDANRALMG+NMQRQAVP ++ + P+VGTG+E VA D V++ Sbjct: 611 IVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLIQPEAPIVGTGIEERVARDIQAVIVSE 670 Query: 720 RGGVVQYVDASRIVIKVN----EDEMYPGEAGID----IYNLTKYTRSNQNTCINQMPCV 771 G V V I++ E + + G + +Y L K+ RSN TCINQ P V Sbjct: 671 VDGTVSSVTGKEIIVTPTGSPVEQKKKKSKQGSEREGIVYKLNKFMRSNAGTCINQKPIV 730 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 G+ V++GDVLADGPST GELALG+N+ VAFMPWNGYNFED+I+VSERVV+ED FT+I Sbjct: 731 KKGQVVKKGDVLADGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSERVVKEDLFTSI 790 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 +I E V+RDTKLGPEEIT DIPNVG+ AL L GI+ +GAEV GDILVGK+TPK Sbjct: 791 YIDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPGDILVGKITPKS 850 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT--------RDGVEKDK 943 ET+L PEE+LLRAIFGEKA+DVKDSSLRVP+G G V+DV+V + + + K Sbjct: 851 ETELAPEERLLRAIFGEKAADVKDSSLRVPSGTYGIVMDVRVSSGTARVRKEKINASEAK 910 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL-----DKLPRDRWL 998 + ++ E + Q +++L EEL + + + L VE ++ K+ + Sbjct: 911 QKIKEIEERYDQKEEELREELTQALSNILLNEKIPLDVVNVETGEIIIPANRKITKVLLR 970 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR-------KITQGDDLAPGVLKIVK 1051 ++ ++ + + + E+ FE K E R +I G+D PG++K VK Sbjct: 971 KMAQAYDKIEIDPSPIRSKIFEIIGNFEAKFEQLRNDRELELDQIESGEDTEPGIIKQVK 1030 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V++A KR++ GDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVLNPLGVPSRMN+GQ Sbjct: 1031 VFIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPYLPDGTPVDIVLNPLGVPSRMNVGQ 1090 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +LETHLG+AAK +G + + + K+REF+ +A Sbjct: 1091 VLETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKAG---------------------- 1128 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + + K +L YDGRTGE F + V VG +Y Sbjct: 1129 -------------------MDEDGKSIL-------------YDGRTGEMFNQRVVVGMIY 1156 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 M+KLNH+V DK+HAR+ G YSLVTQQPLGGKAQ+GGQRFGEMEVWA+EAYGAAY LQE+L Sbjct: 1157 MMKLNHMVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWAMEAYGAAYILQELL 1216 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TVKSDDV GRT++Y++IV G + +E PESFNVL+KE++ L + + + Sbjct: 1217 TVKSDDVQGRTRIYESIVKGENYLETTTPESFNVLIKELQGLCLEVNI 1264 >UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Tax=Aquificales RepID=RPOB_AQUPY Length = 1469 Score = 1324 bits (3426), Expect = 0.0, Method: Composition-based stats. Identities = 656/1468 (44%), Positives = 902/1468 (61%), Gaps = 161/1468 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 RK FG+R ++L+ PYLLSI +SF+ F++ GLE FR+ FP + N Sbjct: 8 RKFFGRRTEILEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLEHIFRTSFPFKDPDENFI 67 Query: 68 LQYVSYRLG--------------------------------EPVFDVQECQIRGVTYSAP 95 L+Y+ Y +G + F +EC+++G+TYSAP Sbjct: 68 LEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCPECGAKLVYKEKFTPEECKLKGLTYSAP 127 Query: 96 LRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 LRV L+L + + + ++VY GE+PLMTDNG+F+INGTER+I++QL RS GV Sbjct: 128 LRVMLQL----KAKTKNGYRTFPPRKVYFGEVPLMTDNGSFIINGTERIIINQLIRSSGV 183 Query: 156 FFDS--DKGKTHSSGKVLYNARIIPYRGSWLDFEFD-PKDNLFVRIDRRRKLPATIILRA 212 FFD +K K + ++LY A IIP +GS ++FE D + RIDR+ KL A +LRA Sbjct: 184 FFDEKEEKQKDATITRILYRASIIPDKGSRVEFELSGATDLISARIDRK-KLSAISVLRA 242 Query: 213 LNYTTE-QILDLFFEKVIFEIRDNKLQM------ELVPERLRGETASFDIEANGKVYVEK 265 T IL F+E V I +K E PE L ++ Sbjct: 243 FGLETAYDILKPFYEGVRKYIVKDKYLYDAETGEEFTPEDLEHHYIF--------AILKF 294 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 +I + + + E + +D+ E++ + + + K Sbjct: 295 KAKIAGFGTSKEREIIEERYIEEWEELVR------ILDDERIEVLSV--TSVPRENVIK- 345 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTND-RLSALVEIYRMMRPGEPPTREA---- 380 S G ++TL T+ ++V R L+E+Y+ +R E T E Sbjct: 346 SPYGKSLVDTLATDTSPRDADRRSPVKVPAEYTLRDYGLMEMYKKLRHIEALTMEIDSII 405 Query: 381 --AESLFENLFFSEDRYDLSAVGRMKFN-------------------------------- 406 A F F RYDLS VGR+K N Sbjct: 406 ERARVYFNVFFRDLKRYDLSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPPLALAEDYGE 465 Query: 407 --------RSLLRE-------------EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 + LL+E + + L D+I+++K LID+R+G+ + DDI Sbjct: 466 YKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHGRVKKDDI 525 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVK 503 HLGNRR+RSVGE+ ENQ R+G+ ++E+ ++R + + L PQD IN + ++ A+ Sbjct: 526 AHLGNRRVRSVGELLENQARLGIAKMEKVFRDRSATIHPEQPDLKPQDFINPRYVTNAIA 585 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 +F + QLSQ++D NPLSE+THKRR+SALGPGGLTRE A FE+RDVHP+HYGR+CPIET Sbjct: 586 DFLKTGQLSQYLDNTNPLSELTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIET 645 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 PEG NIGL+ S +VYA+ NEYGFL TPYRKV +G VTD+I +L+A EE NYVIAQ ++ Sbjct: 646 PEGQNIGLVTSPTVYARVNEYGFLITPYRKVENGRVTDKIEWLAAYEEENYVIAQ-STPT 704 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 DEEG + V R K + L +QVDY+DVS +QV+S +SLIPFLEHDDANRALMG+ Sbjct: 705 DEEGRIKAEFVLARHKNDIRLVKPEQVDYIDVSPRQVISPSSSLIPFLEHDDANRALMGS 764 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM-- 741 NMQRQAVP + PLVGTGME+ +A DS VAKRGGVV+ VD S+I+++VN +E+ Sbjct: 765 NMQRQAVPLIFTQAPLVGTGMEKKIARDSHAVVVAKRGGVVEEVDGSKIIVRVNPEEINL 824 Query: 742 -YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 P + GIDIY L K+ R+NQ TC+NQ P V GE VE+G ++ADG STD GELALG+++ Sbjct: 825 EDPLDIGIDIYELRKFERTNQKTCVNQRPIVKKGERVEKGQIIADGHSTDRGELALGKDV 884 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 VAFMPW GYNFED+I++SER+V+ED +T+IHI+EL +R+TK+G EEIT IP V E Sbjct: 885 LVAFMPWRGYNFEDAIVISERLVKEDVYTSIHIEELEVEARETKVGDEEITRQIPGVPER 944 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 AL+ LDE GIV +G V GDILVGKVTPKGET+LTPEEKLL+AIFGEK DVKD+SLR Sbjct: 945 ALAHLDEHGIVRVGTYVKPGDILVGKVTPKGETRLTPEEKLLQAIFGEKTKDVKDASLRC 1004 Query: 921 PNGVSGTVIDVQVFTRDGVE--KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 P GV G VIDVQVFTR G + KD A ++E +L+ +++L ++ +L +G+ ++ + Sbjct: 1005 PPGVEGIVIDVQVFTRKGGKAAKDMLAQKVEREELEALERELEKKKNLLMSGVEKVLKGL 1064 Query: 979 LVAGGVE-------------AEKLDKLPRDRW------LELGLTDEEKQNQLEQLAEQYD 1019 ++ + E +++ ++ E TDEE ++ ++ + Sbjct: 1065 ILGKKTDKDVKIGKKEIKKGTEITEEIFKEYSQYILARPENFFTDEELIKKIREIYTRSR 1124 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 +K + K+ + + DL PGV+ +VKV++A KR+I+ GDKMAGRHGNKGVIS + Sbjct: 1125 TQIDMLQKVYQEKKETLLKRRDLPPGVITLVKVFIANKRKIKVGDKMAGRHGNKGVISVV 1184 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P+EDMP+ +GTPVDIVLNPLGVPSRMN+GQILETHLG AAK +G KI M+++ ++ Sbjct: 1185 LPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRDRK 1244 Query: 1140 KLREFIQRAYDLGADVRQKVD-----LSTFSDEEVMRLAENL-RKGMPIATPVFDGAKEA 1193 + E+++ Y +G + + L++ S+EE + + ++G+P+ATP F+GA E Sbjct: 1245 AITEYLKEIYAVGDENGENAKFIEEFLNSLSEEEFWSVVRDYAQRGIPMATPAFEGADEK 1304 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 +KELLK LP SG+ LYDGRTGE F+ VTVGYM+MLKL H+VDDK+HAR+TG YSL Sbjct: 1305 AVKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPYSL 1364 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 VTQQPLGG+AQFGGQR GEMEVWALEA+GAAYTLQEMLTVKSDDV GR+K+Y+ IV G + Sbjct: 1365 VTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVEGRSKVYEAIVKGKY 1424 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELED 1341 PG+PESF VL++E++ L +N++ + Sbjct: 1425 TYTPGIPESFKVLVRELKGLSLNVKCMN 1452 >UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria RepID=B2KEN1_ELUMP Length = 1270 Score = 1321 bits (3418), Expect = 0.0, Method: Composition-based stats. Identities = 607/1366 (44%), Positives = 830/1366 (60%), Gaps = 163/1366 (11%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSELQ 69 +FG+ L +P LL +Q +SF F++ D GL+AAF VFPI++ G+ +L+ Sbjct: 5 NFGQISSKLSLPDLLDMQKESFVDFLQLDVAPTKRELKGLQAAFEDVFPIEAPDGSMKLE 64 Query: 70 YVSYRLGEPVF-DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 +V Y LG P + Q+ +R TYSAP++ +RL + +R+ G +K+ EQ+V + ++P Sbjct: 65 FVKYELGAPRYSTPQQAALRDGTYSAPMKAVMRLSVKKRD---GKLKEASEQDVTLCDLP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS-GKVLYNARIIPYRGSWLDFE 187 LMTD G FV NG ERV+VSQLHRSPG+ F+ D+ K S+ GK LY ARIIPYRG+W++F Sbjct: 122 LMTDAGCFVFNGAERVVVSQLHRSPGIIFEEDEEKKQSTLGKKLYVARIIPYRGAWIEFS 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 FD + L+VRIDR++K+ AT LRA T QI+ F++ E++ ++ + + Sbjct: 182 FDIMNALWVRIDRKKKVLATTFLRACGLETNAQIIQAFYDVEDVEVKPAEI------DNV 235 Query: 247 RGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 G A+ DI A G+V + Sbjct: 236 VGRYAADDIVDPATGEVLWNLDDK------------------------------------ 259 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL--RVDPTNDRLSA 362 A M + + ++ + K+++ + N P I TL R D A Sbjct: 260 --------AAMPMDDKIFKEMVERKIKKVKIISGNPRQDDPGILATLENRKDQIRTSKEA 311 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFF-SEDRYDLSAVGRMKFNRSL------------ 409 +IY+ MR + +E AE+ +NL F + RYDLS VGR K N+ Sbjct: 312 QADIYKKMRGQDFVVKEQAEAFLDNLIFDNIRRYDLSYVGRYKINKKFASLFDIVENLKF 371 Query: 410 --LREEIEGSGILSKDDIIDVMKKLIDIRNGKG-----------EVDDIDHLGNRRIRSV 456 + + LS +DII +K L+ + G+ + DDIDHLGNRR+R + Sbjct: 372 KKFTKPTDKRRTLSAEDIIVTVKYLLALNAGEDAQKMYGEEIIFKTDDIDHLGNRRVRGI 431 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 GE+ ENQ RVGL ++ + ++R++ +L + P+ ++NA+P+ A +K+FFG+SQLSQFMD Sbjct: 432 GELLENQIRVGLSQMAKTARDRMN-KELASHTPRALVNAQPVQAIIKKFFGTSQLSQFMD 490 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 Q NPLSE+THKRR+SALGPGGL R+RAGFEVRDVH THYGRVCPIETPEGPNIGLI SL+ Sbjct: 491 QINPLSELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGLITSLA 550 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 Y++ N+YG +ETPYRKV G VTD YL+A +E + ++AQ+N+ L + G D+V+C Sbjct: 551 CYSKVNKYGLIETPYRKVNSGKVTDNFEYLTADQEDDLMVAQSNTPLTDSGKINTDMVSC 610 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + + + S +VDYMDVS QV+SV A+LIPFLEHDDANRALMG NMQRQ VP L + Sbjct: 611 RVRSDYPIVSPSEVDYMDVSPLQVISVSAALIPFLEHDDANRALMGCNMQRQGVPLLLTE 670 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 PLVGTG+E VA DSG T A + G V + A +I ++ E +IY+L KY Sbjct: 671 APLVGTGIEHEVARDSGATISAAKPGRVVFAAADKIAVEPLEG------GAPEIYDLIKY 724 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQ+TCINQ P V G+ V++G VLADGP+ G LALG+N+ V FM W GYN+ED+I Sbjct: 725 KRSNQDTCINQRPLVKAGDIVKKGTVLADGPAMKDGFLALGKNLLVGFMSWEGYNYEDAI 784 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 LVS ++V+ED FT++H+ E + +R+TKLG EEIT DIPN+G AL+ LD GIV Sbjct: 785 LVSHKLVKEDVFTSVHLHEFSIDARNTKLGAEEITRDIPNIGAEALAHLDADGIVIPSTV 844 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPKGE QLTPEE+LL+ IFG+KA DV D+SLRVP G SG VI +VF R Sbjct: 845 VEPGDILVGKVTPKGEQQLTPEERLLKVIFGKKADDVVDASLRVPPGTSGKVIGTRVFVR 904 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 K+K E+ ++K + + + L+ L+ + + +D Sbjct: 905 ----KEKLTKAEEKARIKALEDEKTTNLETLKE---------------QRKLALTNIKDS 945 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 ++ +EE+ N L Y +L+ + E + QGD+LA V K VKV++A Sbjct: 946 NVKDAKKEEERINAL------YKKLEKRVLEDFEREMEFSKQGDELAVTVNKSVKVFIAS 999 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 KR++ GDK++GRHGNKGV++KI P EDMP+ +GTP+DIVL+PLG+PSRMN+GQ+ ET Sbjct: 1000 KRKLMVGDKLSGRHGNKGVVAKILPEEDMPFLPDGTPLDIVLSPLGIPSRMNVGQLFETM 1059 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 LG AAK +G + +RE I++A + Sbjct: 1060 LGWAAKNLGYNAATPVFDGPTEETVREEIKKAKKA-----------------------LI 1096 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 KG+P + +I LYDGRTG+ FE VT+GYMY++KL Sbjct: 1097 EKGVP------------------EKHLPDDYCRITLYDGRTGQPFEEKVTIGYMYIMKLI 1138 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 HLV+DK+HARSTG YSL+T+QPLGGKAQFGGQRFGEMEVWA+E YGA YTLQE LTVKSD Sbjct: 1139 HLVEDKVHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAIEGYGATYTLQEFLTVKSD 1198 Query: 1297 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 D GRTKMY++IV G +PG+PESF VL+KE+++LG+++EL + Sbjct: 1199 DFTGRTKMYESIVRGEAPQQPGVPESFKVLVKELQALGLSVELLKD 1244 >UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Tax=Bacteria RepID=RPOB_CHLPD Length = 1312 Score = 1310 bits (3390), Expect = 0.0, Method: Composition-based stats. Identities = 607/1399 (43%), Positives = 815/1399 (58%), Gaps = 182/1399 (13%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFPIQSYSGNSELQ 69 DF K V+D P LL +QLDSF FI+ GLE RS FPI G L+ Sbjct: 22 DFSKIQSVIDPPDLLKVQLDSFHNFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLE 81 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 Y+SY +P + V++C RG+TY L+VKL+L Y+ E E K+ +QEVY+G IP Sbjct: 82 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLS-YKDEPDEADWKETIQQEVYLGRIPY 140 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 MT+ GTF++NG ERV+V+QLHRSPGV F H +GK +Y+A+I+P RGSW++F+ D Sbjct: 141 MTERGTFIVNGAERVVVAQLHRSPGVVFSE---AIHPNGKKMYSAKIVPTRGSWIEFQTD 197 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + +FV ID+++ T +LRA+ + ++ IL LF ++ + E+L G Sbjct: 198 INNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLF------DLVEEVKITSAKKEQLIG 251 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 + + DI +D TGE Sbjct: 252 QYLASDI----------------------------------------------VDMQTGE 265 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFT----NDLDHGPYISETLRVDPTNDRLSALV 364 ++ +A ++ D++ ++ +G+K + + + + I T+ D + AL Sbjct: 266 VV-SARTAITEDIVDQIIAAGYKSVRVMKSFSGNDKGPDKSIIINTILNDNSATEEEALE 324 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG------ 418 +Y +R E P +AA S E FF++ +YDL VGR + + L +E E G Sbjct: 325 IVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLSKEFEELHGYLDGQP 384 Query: 419 ------------------------------ILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 +L+ DII V+ LI + NG+ EVDD+DHL Sbjct: 385 ELKKLSDTIYEKILHTIQSFSDEPIGGDILVLTHYDIIAVIYYLIKLVNGQAEVDDVDHL 444 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 NRR+RSVGE QF +GL R+ + V+E+L+ D D + P D+INA+ +S+ V FF + Sbjct: 445 ANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFAT 504 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQLSQFMDQ NPL+E+T+KRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPN Sbjct: 505 SQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPN 564 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 IGLI+SLSVYA+ N+ GF++TPYR VT+GVVTD + LSA +E N + + LDE Sbjct: 565 IGLISSLSVYAEINDKGFIQTPYRVVTNGVVTDTVLMLSAEDEENKITVPVSIPLDENMK 624 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 + V R+KG+ L + V+YMDVS Q+VS A+LIPFLEHDD NRALMGANMQRQ Sbjct: 625 IAIESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQRQ 684 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED-------EM 741 AVP L A+ P+VGTGME VA DS +A+ G+V V A I ++ + D + Sbjct: 685 AVPLLTAEAPIVGTGMESKVARDSRSVILAEGDGIVDDVTAEYIKVRYDIDADTDVRLSL 744 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + G+ Y L K+ RSNQ+TCI+Q P + +G+ V +GDVLAD ST+ GELALG+N+ Sbjct: 745 LDPDEGLKTYKLIKFKRSNQDTCISQKPLIHIGQRVSKGDVLADSSSTENGELALGKNVL 804 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 VAFMPW GYNFED+I++SER+V +D FT+IHI E RDTK G E+ T DI NV E A Sbjct: 805 VAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSEDA 864 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L LDE+GIV IGAEV DILVGK+TPKGE+ TPEEKLLRAIFG+K+SDVKD+S+ VP Sbjct: 865 LRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVP 924 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE-----------AG 970 G+ G VI ++F+R +IE ++ K K+ + L+ G Sbjct: 925 AGMKGIVIKTKLFSRKKKVGLDIKEKIEILEKKYDYKEYDLRKKFLKRLKQLLEGKTSTG 984 Query: 971 LFSRIRAVLVAGGV-----EAEKLDKLPRDRWLELGLT---DEEKQNQLEQLAEQYDELK 1022 ++S +LVA E+ +P ++ E+ + L +++ Sbjct: 985 IYSDKGKLLVAEDAVYDDSVLERFTAIPFLESIDFVKGVTQSEKVNENVMLLVKEFRLKL 1044 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 + + + ++ K+ GD+L PG+ ++ KVY+A KR+IQ GDKMAGRHGNKGV+ KI PI Sbjct: 1045 KDLNDERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVGKILPI 1104 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+ ENG PVDIVLNPLGVPSRMNIGQ+ ET LG A K +G K + Sbjct: 1105 EDMPFMENGKPVDIVLNPLGVPSRMNIGQLYETSLGWAGKELGVKFKTPIFNGATYQ--- 1161 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 EV + E ++DG + + + +G Sbjct: 1162 -------------------------EVQQELEKAGLPSHGKVSLYDGRTGEQFDDEVTIG 1196 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 Y+YMLKL+HLVDDK+HARSTG YSL+TQQPLGGK Sbjct: 1197 --------------------------YIYMLKLSHLVDDKIHARSTGPYSLITQQPLGGK 1230 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 AQFGGQRFGEMEVWALEAYGAA L+EMLTVKSDDV GR K Y+ IV G + EPG PES Sbjct: 1231 AQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEPGTPES 1290 Query: 1323 FNVLLKEIRSLGINIELED 1341 FNVL++E++ LG+ I ++D Sbjct: 1291 FNVLVRELQGLGLEIRIDD 1309 >UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC1_9BACT Length = 1258 Score = 1269 bits (3285), Expect = 0.0, Method: Composition-based stats. Identities = 580/1356 (42%), Positives = 828/1356 (61%), Gaps = 150/1356 (11%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSELQYVSY 73 P+V ++P LL++Q+DSF F+++D Q GL+A F ++FP++ GN L+++ Y Sbjct: 19 IPEV-EIPNLLAMQVDSFNDFLQKDIHPQRREKKGLQAVFENIFPLEDTKGNFLLEFIEY 77 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 + + + ++EC+ R ++Y APL+ K+RL ++E KD EQEV++GEIPL+T+ Sbjct: 78 NVLQEKYSLEECRERNLSYQAPLKAKMRLSVFENREGVREHKDTLEQEVFLGEIPLITEQ 137 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GTFVING ERVI+SQL RSPGVFF +K H SGK LY+A++IPY GSWLDF+ D D Sbjct: 138 GTFVINGAERVIISQLQRSPGVFFSEEK---HPSGKTLYSAKVIPYSGSWLDFDIDIHDV 194 Query: 194 LFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 +FV ID+RRKLP T + RA+ T E + F++ +++ K G Sbjct: 195 MFVHIDKRRKLPVTTLFRAIGISTNEDLRKTFYKSEKLNLKEAK-----------GRHLF 243 Query: 253 FDIEANG--KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 DI G + +IT I+ L + + +E + Sbjct: 244 ADIYEKGNPEPIAMANEQITDSLIKFLSERKITKVE-----------------------V 280 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 N E++ +L T+ DPT ++ AL +IY ++ Sbjct: 281 IDYNYEIARKVLE-------------------------NTMAKDPTTNQEEALKKIYNLI 315 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 RPGE EAA+ L + +FF+E RY+L VGR K N L L+ +D + + K Sbjct: 316 RPGEDAPLEAAKQLVDRMFFNEKRYNLGEVGRYKINSRLGINVDPKIMTLTVEDFVYIFK 375 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 LI+I + + EVDDID+L NRR+R+VGE+ + Q+ +G+ V R ++ER+++ ++D + Sbjct: 376 TLINIYHDEDEVDDIDNLANRRVRTVGELLQEQYTIGMAMVARIIQERMAISNIDEVTVH 435 Query: 491 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 D++N+ + + V+ FF + QLSQFM+Q NPL+ + HKR +SALGPGGL RERAGFEVRDV Sbjct: 436 DLVNSNALISVVQSFFLTGQLSQFMEQTNPLAALRHKRALSALGPGGLARERAGFEVRDV 495 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE 610 H +HYGR+CPIETPEGPNIGLI S ++Y++ N +GFLETPYRKV DG +TDE YL A + Sbjct: 496 HSSHYGRICPIETPEGPNIGLIVSPAIYSRINHFGFLETPYRKVVDGCITDEYEYLDASQ 555 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 E Y+IAQ++ +LD+ ++++ R +GE S + V YMDV+ QQ+VSV A+LIPF Sbjct: 556 EEKYIIAQSDVHLDDNRRITDEMIFARDRGEFVQVSPNLVHYMDVAPQQMVSVSAALIPF 615 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 LEHDDANRALMG+NMQRQAVP + PLVGTGME+ ++D+ AVA G+V V ++ Sbjct: 616 LEHDDANRALMGSNMQRQAVPLINPQAPLVGTGMEKIASMDTSSIAVAPYDGIVTKVTSA 675 Query: 731 RIVIK-VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 I +K +NE + + + +L K+ R+NQ+TCINQ P V +G+ V++G ++DG Sbjct: 676 FIDLKPLNEKDEAYYLSTGNRIHLKKFVRTNQDTCINQRPIVRVGDTVKKGQPISDGACV 735 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 + LALG N+ VAFMPW GYN+ED++++SE+V +ED T+I+I+EL + R+ K G EE Sbjct: 736 EDNRLALGTNLMVAFMPWYGYNYEDAVILSEKVAREDTLTSIYIEELEVLVRNVKNGREE 795 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG-ETQLTPEEKLLRAIFGE 908 + DIPNV AL LD++GI+ +G+ + GDI+VGKVTPK E +PEE L+RA+FG+ Sbjct: 796 LAYDIPNVPAQALRNLDKTGIIRVGSVIHAGDIIVGKVTPKSVEIDPSPEENLMRALFGD 855 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 +A D +SSL+ G+ G VIDV+VF+R +E+ E E ++++ K++L+ +E Sbjct: 856 RAGDFTNSSLKAKPGMEGVVIDVKVFSR--LEEGSDLEEENEDKIEKLKEELALRRSKIE 913 Query: 969 AGLFSRIRAVLV-------------------AGGVEAEKLDKLPRDRW-LELGLTDEEKQ 1008 ++ AVLV + + L ++ + L++ L ++ + Sbjct: 914 EFKEEKLSAVLVGQIAKNIWDEKTNIPFIAPGKKITKQDLKRINFKKLDLDVELVEDREV 973 Query: 1009 NQ--LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 N Q+ + + + + + R +I GD+L GV K+VKVY+A KR+I+ GDKM Sbjct: 974 NDYIYSQIVLKIKQSLEQSDNIYKKSRERIKHGDELQYGVRKMVKVYVAKKRKIEVGDKM 1033 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKGVIS I PIEDMP+ E+GTPVDIVLNPLGVPSRMNIGQI+ETHLG AAK +G Sbjct: 1034 AGRHGNKGVISIIAPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQIMETHLGWAAKTLGF 1093 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 ++ + + ++E + G+P Sbjct: 1094 EVETPIFDGASNEDI------------------------------VSELRKAGLP----- 1118 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 + K +L G+ +GE F+ VTVG +YM+KLNHLV DKMHAR Sbjct: 1119 ------EDGKTVL------YDGK-------SGEPFKERVTVGIIYMMKLNHLVADKMHAR 1159 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 STG YSL+TQQPLGGKAQ GGQR GEMEVWALEAYGAA L+EMLT+KSDDV+GR +K Sbjct: 1160 STGPYSLITQQPLGGKAQHGGQRLGEMEVWALEAYGAASVLEEMLTIKSDDVDGRNNAFK 1219 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 I G++ PG+PESFNVL+ E++SLG +IE E Sbjct: 1220 AITRGDNPPPPGVPESFNVLISELKSLGFDIEFIKE 1255 >UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria RepID=C1A6N7_GEMAT Length = 1522 Score = 1253 bits (3242), Expect = 0.0, Method: Composition-based stats. Identities = 554/1205 (45%), Positives = 758/1205 (62%), Gaps = 76/1205 (6%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSELQ 69 F K +D+P+LL IQ +F+ ++ D Q GLE F+ +FPI N L+ Sbjct: 5 SFAKLETGMDMPHLLDIQTRAFESLLQLDAASQEREDVGLERVFKDLFPITDVHENFSLE 64 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 +V Y LGEP + V EC R +TYSAPL+ L+LVI+E ++I E+EVY+GE+PL Sbjct: 65 FVRYSLGEPKYTVAECIERDMTYSAPLKATLQLVIFEDTGDGKRPRNIIEKEVYLGELPL 124 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 +T+ GTFVING ERVIVSQLHRSPGV F+ TH +G+ L ++RIIP+RGSW++F D Sbjct: 125 LTELGTFVINGAERVIVSQLHRSPGVVFEES---THPNGQRLLSSRIIPFRGSWVEFTVD 181 Query: 190 PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 D ++V ID+++K PAT +LRA Y IL LFF + ++ K + + G Sbjct: 182 IHDVIYVHIDKKKKFPATALLRAFGYGENRDILRLFFAERDLDLTK-KRETRNDQREVLG 240 Query: 249 ETASFDIEANGKV------------------------YVEKGRRITARHIRQLEKDDVKL 284 + DI G+V V +G +T + +L + +K Sbjct: 241 AIIAEDITLEGEVTAADAPKPKTKKAKAERERSEAELLVREGDELTEEVLNRLVRQGIKT 300 Query: 285 IEVPVEY-----------------IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 +++ Y +++A+D ID+ TGE++ + L+ ++ ++ + Sbjct: 301 VKMFASYTQIDLRDEQDAIDRGEREVRRMLARDVIDQDTGEVVAEKDTTLTDAVIKRIRK 360 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 + ++ + I TL DPT AL +IY ++RPG+ P RE A+ E Sbjct: 361 ADIVKVFVFVASGRAESTLIKNTLAKDPTKAEEEALKQIYALLRPGDAPNRETAKQALER 420 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 LFFS RYDL VGR K N+ L + +L+K+D +++M++L+++ G+G+VDDID Sbjct: 421 LFFSPKRYDLGRVGRYKINQRLRLNTPMRTTVLTKEDFVEIMRQLVELHEGRGDVDDIDQ 480 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-DLDTLMPQDMINAKPISAAVKEFF 506 LGNRRIRSVGE+ NQF VGL R+ R VKER+S+ D + + D++NA+ +SA ++ FF Sbjct: 481 LGNRRIRSVGELIANQFSVGLSRMARLVKERMSINTDPEKISLDDLVNARTVSAVIQAFF 540 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 GSSQLSQFMDQ NPL+E+THKRR+SALGPGGLTRERAGFEVRDVH + YGR+CPIETPEG Sbjct: 541 GSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSQYGRMCPIETPEG 600 Query: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE 626 PNIGLI SL+ +AQ N+ GF+ETPYR V +G VT EI +L A E + +IAQANS L+ + Sbjct: 601 PNIGLITSLACFAQVNDLGFIETPYRIVKEGRVTGEIVWLDANREEDAIIAQANSKLNPD 660 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 G FV+DLV R +G+ L +DYMDV+ +Q+VS+ A+LIPFLEHDDANRALMG+NMQ Sbjct: 661 GTFVDDLVLSRKRGDLPLEPPMNIDYMDVAPEQLVSIAAALIPFLEHDDANRALMGSNMQ 720 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK-------VNED 739 RQAVP L P VGTG+E VAVDSG +A+R GVV V A I+I V++ Sbjct: 721 RQAVPLLNPATPFVGTGLEATVAVDSGAVIIARRPGVVTNVTADEIIIDAGLNQEAVDDG 780 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 +D Y L KY R+NQ+T INQ P V +G+ V +G+VLADG +T++G+LALG+N Sbjct: 781 RPLTRLGQLDRYRLKKYWRTNQDTAINQRPLVRMGQTVAKGEVLADGAATEMGQLALGRN 840 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + VAFMPW G+NFED+I++SER+V+ D F++IHIQEL RDTK G EEIT +IPNV E Sbjct: 841 VTVAFMPWYGHNFEDAIVLSERLVKFDVFSSIHIQELELHVRDTKRGQEEITREIPNVAE 900 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 +L LDE GIV IGA V GDILVGK+TPKGET+L+PEEKLL AIFGEKA DVKDSSL+ Sbjct: 901 ESLVDLDERGIVRIGAAVKAGDILVGKITPKGETELSPEEKLLTAIFGEKAKDVKDSSLK 960 Query: 920 VPNGVSGTVIDVQVFTR---DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR-- 974 V G+ G VIDV++F+R VEKD+ E +L+ +K E++ E Sbjct: 961 VSPGMEGVVIDVKIFSRVEDQVVEKDRGERIGEVRRLEGEEKIRVNEVRDAELSRLLEGE 1020 Query: 975 -----------IRAVLVAGGVEAEKLDKLPRD--RWLELGLTDEEKQNQLEQLAEQYDEL 1021 A+ + E LD L + +++ +++ + + E Sbjct: 1021 TVALALKAGTVEEAIGAGTTLTREILDGLRFATLDLKTFRVENKKANDRVRDILDAAAEE 1080 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 K E++ E + +I Q D+L PGV+++VKVYLA KR+I GDKMAGRHGNKG++++I P Sbjct: 1081 KARIEERAEDRIDRILQPDELPPGVIQLVKVYLAEKRKISVGDKMAGRHGNKGIVARIVP 1140 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ NG PVDIVLNPLGVPSRMN+GQILETHLG AAK + + + ++ Sbjct: 1141 EEDMPFLPNGRPVDIVLNPLGVPSRMNVGQILETHLGWAAKLLNFYAKTPVFEGANEREI 1200 Query: 1142 REFIQ 1146 ++ Sbjct: 1201 GLLMK 1205 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 105/152 (69%), Positives = 127/152 (83%) Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 D +A EL++L L +G++RL DGRTGE F PVTVG +YMLKL+HLVDDK+HARS Sbjct: 1347 DADVDAAASELIRLAGLTPTGKVRLRDGRTGETFTAPVTVGEIYMLKLSHLVDDKIHARS 1406 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 G YSLVTQQPL GKAQFGGQRFGEMEVWALEAYGAA+TLQE+LTVKSDDVNGR+++Y+ Sbjct: 1407 IGPYSLVTQQPLAGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVNGRSRVYEA 1466 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G + EPG+PESFNVL+KE+++LGI + L Sbjct: 1467 IVKGQNLPEPGIPESFNVLVKELQALGIKVTL 1498 >UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax=Planctomycetales RepID=RPOB_RHOBA Length = 1240 Score = 1252 bits (3240), Expect = 0.0, Method: Composition-based stats. Identities = 579/1361 (42%), Positives = 802/1361 (58%), Gaps = 161/1361 (11%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSY 62 E IRK FG D+P L ++Q S+ F+++D +GLE+ R +FPI SY Sbjct: 10 EPTSIRK-FGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVLREIFPIASY 68 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 GN+ L+Y+ Y LG+P + +QEC+ +TY PLR+ LRL ++ E+EV Sbjct: 69 DGNTTLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRL----------NREEPIEEEV 118 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 Y+G++P+M G F+ING ERV+VSQLHRSPGV F ++ T + + L + R+IP RGS Sbjct: 119 YLGDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFVLEQDTT--TDRKLPSCRVIPERGS 176 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALN---YTTEQILDLFFEKVIFEIRDNKLQM 239 W++ KD L VRID+ K AT++LRA++ T +L F+E Sbjct: 177 WIEVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLSAFYET------------ 224 Query: 240 ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 G + V G+ T K + K+ V Y +G Sbjct: 225 -------------------GTIKVNGGKDAT--------KIENKIAVDDVVYPSGH---- 253 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 E GE+I A +++ +L + +G +E + DL P I TL D T Sbjct: 254 ----ERAGEIIVEAGYKITTELSETICNAGVTSVEAM---DLPKVPLIFNTLADDNTASH 306 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL+ IY+ +RPG PP E A +LF+ F+ ++RY L VGR + NR L E Sbjct: 307 EEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLGLGVEETVMT 366 Query: 420 LSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 L DD+I ++ LID+ + E+DDIDHLGNRR+R++ E+A + R G +++ R V+E Sbjct: 367 LRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGFLKLRRTVQE 426 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+S+ D + P+ +IN K +SAA+ FFG +LSQ +DQ NPLS++ H+RR+SALGPGG Sbjct: 427 RMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLAHERRLSALGPGG 486 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L R+RAGFEVRDVH +HYGR+CPIETPEG NIGLI+SL++YA ++YGFL TP+RKV DG Sbjct: 487 LNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLCTPFRKVIDG 546 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 ++DE +L A EEG +A A++ + + + R + + + +QV +MDV+ Sbjct: 547 KISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPEQVSFMDVAP 606 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 Q+V V A LIPFLEHDDANRALMG+NMQRQAVP L + P+VGTGMER VA +S + Sbjct: 607 AQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREVAKNSAMVVR 666 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+R G V Y DA+RI I G D Y L KY N+ TC NQ P +++G+ V Sbjct: 667 ARRAGKVTYADATRIEI------------GSDHYPLKKYQGLNERTCQNQKPLITVGDKV 714 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+G ++ADG +T GELALG+N+ V FM ++G+N+ED+I++SE +V+ D +T+IHI++ Sbjct: 715 EKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTYTSIHIEDFD 774 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R+TKLG EE T DIPNV E AL LD++GIV G V GDILVGKV+PK +T+LTP Sbjct: 775 VEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVSPKSKTELTP 834 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 EEKLL AIFG DVK+ SL VP+G+ G VID Q F+R + + + E +LKQ + Sbjct: 835 EEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRR-MSLGEDERKAFERELKQHE 893 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP-----------------RDRWLEL 1000 + +EE+ L IR + A GV+ + P R + Sbjct: 894 TEGNEEIASTFESL---IRDMEEASGVKLKDSTGTPLADGQDPKFVAERATSFRLELVLE 950 Query: 1001 GLTDEEKQNQLEQLAE-QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + DEEK+ E++ + Q+ ++ +++ + K + +GD+L GVL++VK+Y+A KR Sbjct: 951 QIEDEEKRKAAEKVHQTQWQNVEQAIDER-DRKLNSMKRGDELRSGVLQMVKIYIATKRT 1009 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 I GDKMAGRHGNKGVI+KI PIEDMP+ +GTP+ I+LNPLGVPSRMN+GQILETHLG Sbjct: 1010 ISVGDKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGW 1069 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 A +G + + +++ + + A + D T E Sbjct: 1070 AGAKLGFQALTPIFDGASESEINDCLAEAGLPAHGKIRLTDGRTGEPMEQETTVG----- 1124 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + + LKL+HLV Sbjct: 1125 --------------------------------------------YIYM-----LKLHHLV 1135 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARSTG YSL+TQQPLGGKA+FGGQRFGEMEVWALEAYGAAY LQE+LTVKSDDV Sbjct: 1136 DDKVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVE 1195 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 GRTK+Y+++V G + +E G P SF+VL EIR L +N++LE Sbjct: 1196 GRTKIYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLE 1236 >UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 Tax=cellular organisms RepID=RPOB_PELPD Length = 1499 Score = 1219 bits (3154), Expect = 0.0, Method: Composition-based stats. Identities = 604/1169 (51%), Positives = 808/1169 (69%), Gaps = 46/1169 (3%) Query: 210 LRALNYTTEQILDLFFEKVIFEI--RDNKLQMELVPERLRGETAS--FDIEANGKVYVEK 265 R L I F + ++ + +++ +E+ G+ + + ++ Sbjct: 341 FRLLFIDNLHITSSFRDTLLMDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNP 400 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYI---AGKVVAKDYID-ESTGELICAANMELSLDL 321 R + R + L P + A+D + L+ AA+ S + Sbjct: 401 ERYDLSAVGRLKLNFKLGLKVWPECTVLNAPCMFGAEDIASFDELFRLLLAADNRFSQYV 460 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM-MRPGEPPTREA 380 LA+L + K + + E L + N + Y+ + G +++ Sbjct: 461 LARLPEDFVKVLRK-HEPSQPVAEKLREQLLKELNNLVKDP--DFYQKELFTGLALSQQT 517 Query: 381 A--ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS--KDDIIDVMKKLIDIR 436 E F E+R + + R ++ E++ +L+ K+DI+++++ LID++ Sbjct: 518 VALTEAIEGGVFEENRRVIEVLRR----NRMIFEDLYAPVVLTSPKNDILEIVRYLIDLK 573 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 NG+G +DDIDHLGNRR+R+VGE+ ENQ+R+GLVR+ERA+KER+SL +++ LMP D+IN+K Sbjct: 574 NGRGAIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSK 633 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 P+SA VKEFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYG Sbjct: 634 PVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYG 693 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 616 RVCPIETPEGPNIGLI SLS YA+ N++GF+ETPYR V DG +T+E+ + SA+EE + I Sbjct: 694 RVCPIETPEGPNIGLIASLSTYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEGHAI 753 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 AQAN+ +D EG FV D V+ R GE L RD+++ MDV+ +Q+VSV A+LIPFLE+DDA Sbjct: 754 AQANAEVDAEGRFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDA 813 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 NRALMG+NMQRQAVP LRAD PLVGTGMER VA DSGV+ +A+ GVV+ VDASRIV+K+ Sbjct: 814 NRALMGSNMQRQAVPLLRADSPLVGTGMERIVAKDSGVSVIARHNGVVESVDASRIVVKI 873 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 +E E+ G+DIYNL K+ RSNQNTCIN P V +G+ V+R DV+ADGPSTD+GELAL Sbjct: 874 DESEVDETGTGVDIYNLIKFARSNQNTCINNKPVVKVGDVVKRHDVIADGPSTDMGELAL 933 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 GQN+ VAFMPW GYNFEDSILVSE++V++DR+T+IHI+E CV+RDTKLG EEIT+DIPN Sbjct: 934 GQNIVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEYECVARDTKLGKEEITSDIPN 993 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 +GE AL LDESGI+ IGAEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+D+ Sbjct: 994 LGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDT 1053 Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 SL VP GV GTVI +VF+R G +KD R IE+ + ++ +KD +E++I+ ++ Sbjct: 1054 SLTVPPGVEGTVIGAKVFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIRQSAEGKLH 1113 Query: 977 AVLVAGG-------------------VEAEKLDKLPRDRWLELGLTDE-EKQNQLEQLAE 1016 +L+ + AE L L + + ++D+ + + + ++ + Sbjct: 1114 RLLIGKSLSVKLEDGEGNLILAKGKEITAEALKSLSINDMGAISVSDDGQTDDNVSKVID 1173 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076 + + E K +K+ +GDDL PGV+K+VKVY+A+KR++Q GDKMAGRHGNKGV+ Sbjct: 1174 TLNRQIELIQSVFEDKIQKLRRGDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVV 1233 Query: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ 1136 S+I P EDMPY E+G PV+IVLNPLGVPSRMN+GQILETHLG AAKGIG +I ML++Q Sbjct: 1234 SRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWRIEEMLQKQT 1293 Query: 1137 EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIK 1196 L+ +++ Y D + EE+M + L++G+ +A+PVF+GA E +IK Sbjct: 1294 SAESLKAYLKDVY---GDDEVGTFIDGMDQEELMLVCRRLQRGVSMASPVFEGASEDKIK 1350 Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 +L +SGQ+ L+DGR+G+ F+ VTVG MY+LKL+HLVDDK+HARS G YSLVTQ Sbjct: 1351 SMLGKAGFHSSGQVTLFDGRSGDPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYSLVTQ 1410 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME 1316 QPLGGKAQFGGQR GEMEVWA+EAYGAAY LQE LTVKSDDV+GRT+MY+ IV G H +E Sbjct: 1411 QPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVSGRTRMYEAIVKGKHTLE 1470 Query: 1317 PGMPESFNVLLKEIRSLGINIEL---EDE 1342 PG+PESFNVL+KE++SL +++EL EDE Sbjct: 1471 PGLPESFNVLIKELQSLCLDVELLEGEDE 1499 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 202/428 (47%), Positives = 290/428 (67%), Gaps = 8/428 (1%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 M YS +RK F K ++D+P L+ IQ +S+++F++Q+ GLEA FRSV Sbjct: 1 MAYSIANNHLLRKTFTKIKNIIDIPNLIDIQKNSYRRFLQQEGVSESRNNTGLEAVFRSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTV 114 FPI+ +S ++ L+YVSY L +P +DV EC RG+T++AP++VK+RLVI++ +E+ + Sbjct: 61 FPIKDFSESASLEYVSYSLSKPKYDVVECHQRGMTFAAPMKVKVRLVIWDTGKESGIRAI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 KDIKEQEVY GEIPLMTDNGTF+INGTERVIVSQLHRSPGVF+D DKGKTHSSGKVLY+A Sbjct: 121 KDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLDFEFD KD L+VRIDRRRK+PAT++L+AL Y+ EQ+L+ +++ + Sbjct: 181 RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSAEQLLNYYYKSEEIFLTG 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + E L + A D+ +G+V V+ R+ T IR++ + D+K + + + I Sbjct: 241 ETPSKSIDAELLTLQKALVDVVDPKSGEVIVKANRKFTKASIRKMVEHDIKAVPITFDSI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ + D ID +TGE++ N E++ + ++ G + LF ++L +TL Sbjct: 301 IGRYASSDVIDPATGEVLLECNEEVTAEKFDEIKAKGVESFRLLFIDNLHITSSFRDTLL 360 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 +D + AL+EIYR +RPG+PPT +++ +LFENLFF+ +RYDLSAVGR+K N L + Sbjct: 361 MDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNPERYDLSAVGRLKLNFKLGLK 420 Query: 413 EIEGSGIL 420 +L Sbjct: 421 VWPECTVL 428 >UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Tax=Bacteria RepID=RPOB_SULMW Length = 1328 Score = 1168 bits (3022), Expect = 0.0, Method: Composition-based stats. Identities = 530/1354 (39%), Positives = 788/1354 (58%), Gaps = 135/1354 (9%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFP 58 + +T++K I +F + P L IQ+ SF F + G F FP Sbjct: 12 FPFTKEKTI--NFASVRNKISYPDFLDIQIKSFTNFFCINYTYKNISNKGFYKVFIEYFP 69 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I + ++SY++ +P++ ++EC RG+TY+ +R + ++ + K K Sbjct: 70 ISDSKNKFIIDFISYKIYDPLYSIEECIKRGLTYNVYIRARFKIYRTRKRKITIENKRTK 129 Query: 119 E-----QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 Q+VY G P MT +G+F+ NG+ERVIVSQLHRSPGVFF + + Sbjct: 130 YFETIYQDVYFGTCPYMTPSGSFIFNGSERVIVSQLHRSPGVFFGQYDIP---NLPKISY 186 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEI 232 ARIIP +GSW++ D + +++ +D +++LP T +LRAL YT + IL++F I Sbjct: 187 ARIIPLKGSWIELSTDINNVMYIYLDIKKRLPITTLLRALGYTRDIDILNIFNLAEEVNI 246 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + ++ G T + I E+ + R+I+ L+K + +I Sbjct: 247 NK------VNYKKFLGRTLAARIFKTSYQKFEENDILLERNIK-LKKYHIDIILY----- 294 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 ++ + L K ++ K + + I TL+ Sbjct: 295 ----------------------YKIKVISLYKKNEKNEKNL---------YYSIIHNTLK 323 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 DPTN + A + IY+ ++ P + A+ FF E L VGR K N++L + Sbjct: 324 KDPTNSQKEANIYIYKELKDSFPKNDKKAKLFINKFFFDE--THLGEVGRYKLNKTLKLD 381 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 IL+ +DII +++ LI + N K EVDDID+L NRR+++VGE Q+ +G+ RV Sbjct: 382 FPLKDQILNIEDIISIIENLIALCNNKKEVDDIDNLANRRVKTVGEQLYTQYTIGIARVS 441 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 R +KER+++ D +TL P ++IN+K +++ + FFG+ +LSQFMDQ NPL+E+THKRRIS+ Sbjct: 442 RIIKERINVKDNETLTPLELINSKTLTSVINSFFGTDELSQFMDQTNPLAEMTHKRRISS 501 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGL+RERAGFE+RDV+ +HYGR+CPIETPEGPNIGLI+SL V+A+ N GF+ETPY Sbjct: 502 LGPGGLSRERAGFEIRDVNYSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFIETPYF 561 Query: 593 KVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 KV G V + Y+S+ +E +I QAN+ L+ + +++ + R + + + ++ Sbjct: 562 KVKKGKVVINEAPIYISSDQEYGKLITQANAILNYKTGVLKNNIIVRVNADFPMVNYKKI 621 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +Y+DVST Q+ S+ ASLIPFLEHDDANRALMG+NM RQ+VP L P+VGTG+E+ +A Sbjct: 622 NYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGLEKHLAQ 681 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDE---MYPGEAGIDIYNLTKYTRSNQNTCINQ 767 A+ G+V+ VDA+ I +K E + E I Y L K+ ++NQNTC+N Sbjct: 682 YVNALIYAEGDGIVESVDANNIKVKYFNSEKEKLLSFEKRIKTYKLIKFRKTNQNTCLNI 741 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V G V +G VL +G +T G+LALG+N++VAFMP+ GYNFED+I++SE+VV+ED Sbjct: 742 RPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDAIVISEKVVREDW 801 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI E + RDTKLG EE T DIPN E KLD+ GI+ IG+EV GD+L+G++ Sbjct: 802 FTSIHIDEYSLEVRDTKLGMEEFTFDIPNFNEENKKKLDKYGIIKIGSEVKPGDVLIGRI 861 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK-RAL 946 TPK E + EE L+AIFG+K +K++SL+ + + G VID +++++ ++D+ + Sbjct: 862 TPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKADSSLFGVVIDTKIYSKFSSKEDEQKQF 921 Query: 947 EIEEMQLKQ------------AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP- 993 +I+++ K K L E + E L S + ++ G + + K Sbjct: 922 QIKKLNNKFMKNLKLLRKLLINKLILVLEGSVSEGILNSSYKEIIPKGKILNKLNLKKLL 981 Query: 994 --RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 ++ + + ++ K N + ++ + Y +E + KL+ K+ ++ GD++ G++KI K Sbjct: 982 KNQEIIYQNWVNNKYKNNLVFKIIKFYYLKINELKIKLKRKKNRLLIGDEITSGIIKIAK 1041 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V +A KR+++ GDKM+GRHGNKG++++I EDMPY E+GT VD+VLNPLGVPSRMN Sbjct: 1042 VLIAKKRKLKVGDKMSGRHGNKGIVARIVKEEDMPYLEDGTSVDLVLNPLGVPSRMN--- 1098 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +G +L Sbjct: 1099 ------------LGQIYETILGWA------------------------------------ 1110 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + G+ +TP+FDGA EI + + +LP+ G L+DG TGE+F++PVTVG +Y Sbjct: 1111 ---GEKLGINFSTPIFDGASIEEISKYTDIANLPSFGNTYLFDGETGEKFDQPVTVGVIY 1167 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 MLKLNH+VDDKMHARS G YSL+TQQPLGGK++FGGQR GEMEVWALEA+GAA L+E+L Sbjct: 1168 MLKLNHMVDDKMHARSIGPYSLITQQPLGGKSKFGGQRLGEMEVWALEAFGAANILREIL 1227 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 TVKSDDV GRTK Y+ IV PG+PESF+V Sbjct: 1228 TVKSDDVKGRTKTYEAIVKRETIPNPGIPESFHV 1261 >UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria RepID=C6HVV1_9BACT Length = 1729 Score = 1132 bits (2928), Expect = 0.0, Method: Composition-based stats. Identities = 532/1120 (47%), Positives = 719/1120 (64%), Gaps = 90/1120 (8%) Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI------ 302 ET S E V V ++ +++D +I + E + Y+ Sbjct: 662 ETLSQISEHKKLVLVRSKHEDLRVLVQSSQENDGNIITLTTEKPVTMQDLQSYVHMFELE 721 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS- 361 + G + L +S + +++ + E L + R+ Sbjct: 722 EPKKGNPYKKEGELFEFEDLDVAKKSKKNNVSLVYSATNKSHDLLLELLDLAKNPHRIES 781 Query: 362 --ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+VEIY+ +RPGE P E A F+ FF+ RYDLS+VGR+K N L E + + Sbjct: 782 DPAVVEIYKKIRPGEVPHVETARQFFDQSFFNSKRYDLSSVGRLKLNSKLGIRESLSNRL 841 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+K DI++V++ ++D+ KGE+DDIDHLGNRR+RSVGE+ ENQFR+GLVR+ERA+KERL Sbjct: 842 LTKSDIVEVIRYMVDLLENKGEIDDIDHLGNRRVRSVGELLENQFRIGLVRMERAIKERL 901 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 +LGD ++++ D IN KP++A +KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGLT Sbjct: 902 NLGDPESVISSDPINVKPVTAIIKEFFGSSQLSQFMDQTNPLAEVTHKRRLSALGPGGLT 961 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N++GF+E+P R V +G+ Sbjct: 962 RERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGFIESPVRVVENGIA 1021 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 EI YLSA++ Y+IAQA++ LD+ G E V+ R KG+ S DQV Y+DV+ QQ Sbjct: 1022 KPEIVYLSAMDGDKYIIAQASTKLDQNGALTEPQVSARFKGDFISVSPDQVQYIDVAPQQ 1081 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VSV +LIPFLEH+DANRALMG+NMQRQAVP LR PLVGTGME+ VA DSG A Sbjct: 1082 IVSVATALIPFLEHNDANRALMGSNMQRQAVPLLRPSAPLVGTGMEKVVARDSGYVIYAT 1141 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G V +D + +K G+ Y L K+ RSNQNTC+NQ +S ++ Sbjct: 1142 EDGEVVKIDGTSFTVKYKN-------TGLKTYPLIKFRRSNQNTCLNQKVLLSPRTKFKK 1194 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 GDVL DGPST+ G+LA+GQN+ VAFMPW GYNFED+IL+SER+V++D FT+IHI+E Sbjct: 1195 GDVLVDGPSTERGDLAMGQNVLVAFMPWGGYNFEDAILISERLVRDDMFTSIHIEEFELE 1254 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 +R+TK G EEIT DIPN+ + AL LDE GIV IGAEV GDILVGKVTPK ETQLTPEE Sbjct: 1255 ARETKQGKEEITRDIPNLSDEALKNLDEGGIVRIGAEVKPGDILVGKVTPKAETQLTPEE 1314 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 +LLRAIFG+K+++ KD+SL VP G+ G V+DV++ +R G+EK++ + Sbjct: 1315 RLLRAIFGDKSANWKDASLTVPAGIEGIVVDVKILSRKGIEKEEAVMAAPMHGQDIGSLT 1374 Query: 960 LSEE--LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE------------------ 999 + + L+ +E +I+A L+ ++ + LD D L+ Sbjct: 1375 HAYQGELRKVEEEKKEKIKAFLLGKVIKEDILDAETGDVILKKKRRLTTDTLEKLADYSA 1434 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + L+D+++Q++L+ + + E + + + + ++ +GD+LAPGVLK+VKVY+A+KR+ Sbjct: 1435 ITLSDQKEQDELQAIESRTKEKIEAIQMRHDERIGRLKKGDELAPGVLKLVKVYVAMKRK 1494 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 + GDKMAGRHGNKGV+S+I P+EDMP+ +GTPVDI+LNPLGVPSRMN+GQILETHLGM Sbjct: 1495 LSVGDKMAGRHGNKGVVSRIVPVEDMPFLPDGTPVDIILNPLGVPSRMNVGQILETHLGM 1554 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 AA+ +G + + +++ +++ + VD + G Sbjct: 1555 AARALGLHVATPVFDGATEEEIKAMLKKGGISETGQTRLVDG---------------KTG 1599 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 PV TVG MYM KL+HLV Sbjct: 1600 EVFERPV---------------------------------------TVGVMYMFKLHHLV 1620 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWAL+AYGAA TLQE LTVKSDDV+ Sbjct: 1621 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVKSDDVS 1680 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GR++MY+ IV G + ++PG+PESFNVL+KE++SL ++IEL Sbjct: 1681 GRSRMYEAIVRGENYLDPGLPESFNVLIKELQSLALDIEL 1720 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 115/271 (42%), Positives = 172/271 (63%), Gaps = 15/271 (5%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNS 66 +R +FG Q +DV L+ IQ S+++F++ D GL++AF SVFPI+ Y+GN Sbjct: 8 VRHNFGGSQQFIDVQDLIEIQKRSYERFLQLDVPPSLREDSGLQSAFLSVFPIEDYNGNY 67 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE-----------REAPEGTVK 115 + ++ Y LGEP ++ EC RG+TY+APL++K+R+ E + P +VK Sbjct: 68 RIDFIEYSLGEPKYEEYECLERGMTYAAPLKIKIRIAALEQNKEIDKTSPLSKEPSFSVK 127 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +KE+E Y+G++PLMT GTF+INGTERV+VSQLHRSPGVFF DK KT +G L+ +R Sbjct: 128 YMKEEEKYLGDLPLMTTKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRLTGTPLFTSR 187 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 IIPYRGSW+DFE+D KDNL+VRIDR++K PATI+L+A+ T+ ++ ++ +I+ Sbjct: 188 IIPYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTSADVVKEYYNIETLQIKPG 247 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKG 266 ++ G T F ++ + + Sbjct: 248 APELYAYFPIEPGSTLPFQLKDHDGLVFRDD 278 >UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 Tax=Bacteria RepID=RPOB_CLOTH Length = 1250 Score = 1064 bits (2751), Expect = 0.0, Method: Composition-based stats. Identities = 474/1021 (46%), Positives = 645/1021 (63%), Gaps = 71/1021 (6%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ + +R + K +V+D+P L+ IQ +S+++F+++ G + F+ V PI Sbjct: 1 MVHPVKLGRNVRMSYSKIDEVIDMPNLIEIQKNSYEQFLKE------GFKEVFKDVNPIT 54 Query: 61 SYSGNSELQYVSYRLGEP-VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 Y+GN L++V Y L EP + V EC+ R TY+APL+VK+RL+ E ++KE Sbjct: 55 DYTGNLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLINKE-------TGEVKE 107 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 QE++MG+ PLMT+ GTF+ING ERVIVSQL RSPG+++ K +GK L++ +IP Sbjct: 108 QEIFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYAM---KIDKAGKQLFSNTVIPN 164 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIF-------- 230 RG+WL++E D D L VRIDR RKLP T+++RAL Y T+ +I +LF E Sbjct: 165 RGAWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDS 224 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGK--VYVEKGRRITARHIRQLEKDDVKLIEVP 288 + + +E+ GE + + ++ + R A+ R + + Sbjct: 225 TKTEEEGLLEIYKRLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSI---- 280 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G + ++ D TGE+I A +S + + +G + Sbjct: 281 AARIHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV--------------- 325 Query: 349 ETLRVDPTNDRL--SALVEIYRMMR--PGEPPTREAAES--LFENLFFSEDRYDLSAVGR 402 LRVD N ++ + +V+I R + P E E + L E L + + D + Sbjct: 326 -ILRVDGKNVKVIGNDMVDIKRYVDFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKA 384 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 ++ L + ++K+DII + +I + G G DDIDHLGNRR+RSVGE+ +N Sbjct: 385 LQERIDDLIPKH-----ITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQN 439 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 QFR+GL R+ER V+ER+++ DLD + PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPL+ Sbjct: 440 QFRIGLSRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLA 499 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ N Sbjct: 500 ELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVN 559 Query: 583 EYGFLETPYRKVTD---GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 EYGF+ETPYRKV+ G VT+EI YL+A EE Y+IAQAN LDEEG F+ + V CR K Sbjct: 560 EYGFIETPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEPLDEEGRFISNKVVCRYK 619 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 E ++D+MDVS +Q+VSV S+IPFLE+DDANRALMGANMQRQAVP ++ + P+ Sbjct: 620 EEFIEVDPSKIDFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAVPLIKTESPI 679 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 VGTG+E A DSGV +AK GVV+ V A+ I+I+ + D Y L KY RS Sbjct: 680 VGTGIEYRAARDSGVVILAKNPGVVEKVTANEIIIRT-------KDGKRDTYKLLKYMRS 732 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 NQ TCINQ P V GE VE GDV+ADGPSTD GE+ALG+N+ V FM W GYN+ED+IL+S Sbjct: 733 NQGTCINQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLVGFMTWEGYNYEDAILIS 792 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ER+V++D FT+IHI+E +RDTKLGPE+IT +IPNV E AL L+ GI+ IGAEV Sbjct: 793 ERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRA 852 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-G 938 GDILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV++FTR+ G Sbjct: 853 GDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTRENG 912 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 E ++ + + Q +K + G I +L + D P D L Sbjct: 913 DELAPGVNKLVRVYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPF-LPDGTPLDIVL 971 Query: 999 E 999 Sbjct: 972 N 972 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 200/484 (41%), Positives = 265/484 (54%), Gaps = 76/484 (15%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G EV GD++ G T GE L + +L + + +D+ L +S + Sbjct: 743 IVKKGEEVEAGDVIADGPSTDNGEIAL--GKNVLVGFMTWEGYNYEDAIL-----ISERL 795 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ----------ILEAGLFSRIRAV 978 + VFT +E+ + ++ + +++ + I+ G R + Sbjct: 796 VKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDI 855 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + + +R L ++ ++ + L + E + K+ + Sbjct: 856 LVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTR----EN 911 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+LAPGV K+V+VY+A KR+I GDKMAGRHGNKGVIS+I P+EDMP+ +GTP+DIVL Sbjct: 912 GDELAPGVNKLVRVYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLDIVL 971 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNI G + L + Sbjct: 972 NPLGVPSRMNI---------------GQVLEVHLGYAAKAL------------------- 997 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 G +ATPVFDGA E +I + L+ L G+ LYDGRTG Sbjct: 998 --------------------GWKVATPVFDGATEEDIVQTLRKAGLAEDGKSILYDGRTG 1037 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E FE VTVGYMYMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 1038 EPFENRVTVGYMYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1097 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PE F VL+KE++SL ++++ Sbjct: 1098 EAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGIPECFKVLIKELQSLCLDVK 1157 Query: 1339 LEDE 1342 + E Sbjct: 1158 VYSE 1161 >UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Tax=Bacteria RepID=RPOB_CLOBB Length = 1249 Score = 1062 bits (2746), Expect = 0.0, Method: Composition-based stats. Identities = 467/1006 (46%), Positives = 640/1006 (63%), Gaps = 69/1006 (6%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ KR R FGK V ++P L+ +QLDS+Q F+ + GL F + PI Sbjct: 1 MVHPVQVGKRTRMSFGKVKDVTEMPNLIEVQLDSYQWFL------REGLHEVFEDINPIT 54 Query: 61 SYSGNSELQYVSYRLG--EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +++GN L++V Y+L + V+EC+ R TY+APL+V +RL E +IK Sbjct: 55 NFTGNLVLEFVDYKLDMDNIKYSVEECKERDATYAAPLKVSVRLQNNE-------TGEIK 107 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 EQEV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+++ KT GK LY+A +IP Sbjct: 108 EQEVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDKT---GKKLYSATVIP 164 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKL 237 RG+WL++E D D ++VRID+ RKLP TI+ RA+ + + +++LD F E F K Sbjct: 165 NRGAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKD 224 Query: 238 --------QMELVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 +E+ GE + D I ++ + R +R R + L Sbjct: 225 NTKTREEGLLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLAL--- 281 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL-----D 342 IA ++ A D I+ STGE++ ++S L + +G K ++ L + L + Sbjct: 282 -NLRIANQIAAMDVINPSTGEIMVEKGQKISRLLAEDIQNAGIKSVDILVDDKLVRVISN 340 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 + I++ + D ++ ++ LV P RE ++ + E+ Sbjct: 341 NFVDITKQVPFDVSDLQIKELVHY--------PTLREILDNYSDETTIKEE--------- 383 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 +K N S L + + KDDI + + + G G VDDIDHLGNRR+RSVGE+ +N Sbjct: 384 IKKNLSRLIPKH-----IIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQN 438 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 QFR+GL R+ER VKER+++ D +++ PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPLS Sbjct: 439 QFRIGLSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLS 498 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSL+ +A+ N Sbjct: 499 ELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFARVN 558 Query: 583 EYGFLETPYRKV--TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 EYGF+ETPYR V + T+EI Y +A EE +IAQA LDE G+FV+ VT R Sbjct: 559 EYGFIETPYRIVDKENARATEEIRYFTADEEDQCLIAQAKEPLDENGYFVDKKVTVRYLE 618 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + VD MDVS +Q+VSV ++IPFLE+DDA+RALMG+NMQRQAVP L+ P+V Sbjct: 619 DVLVVPATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIV 678 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 GTG+E AVDSGV A+ GVV +V A+ I +K + D G D Y L K+ RSN Sbjct: 679 GTGIEFKAAVDSGVLPKARNAGVVTFVSANEIRVKRDSD------GGTDNYRLLKFKRSN 732 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q++CINQ P V+ GE V + VLADGPSTDLGE+ALG+N+R+ F+ W GYN+ED++L+SE Sbjct: 733 QSSCINQRPIVNKGEIVFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISE 792 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +V+ED FT++HI+E C +RDTKLGPEEIT DIPNV E AL +D+ GI+ IGAEV G Sbjct: 793 ELVREDVFTSMHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSG 852 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GV 939 DILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++D++VFTR+ G Sbjct: 853 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTRENGD 912 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 E + E+ + Q +K + G I +L + Sbjct: 913 ELNPGVNELVRCYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMP 958 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 175/420 (41%), Positives = 235/420 (55%), Gaps = 68/420 (16%) Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAG 982 VFT +E+ + ++ ++ +D+ ++ I+ G R +LV Sbjct: 799 VFTSMHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILVGK 858 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + + +R L ++ ++ + L + E + K+ + GD+L Sbjct: 859 VTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTR----ENGDEL 914 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 PGV ++V+ Y+ KR+I GDKMAGRHGNKGVIS+I P EDMP+ +G P+ I LNPLG Sbjct: 915 NPGVNELVRCYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNPLG 974 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 VPSRMNI G + L Sbjct: 975 VPSRMNI---------------GQVLEVHLGWAAS------------------------- 994 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + G I+TPVFDGA E EI+E L+ +G+ LYDGRTGE F+ Sbjct: 995 --------------KLGWHISTPVFDGATENEIEECLEKAGYNANGKTVLYDGRTGEPFD 1040 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 VTVG MY+LKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG Sbjct: 1041 NLVTVGIMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1100 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 AA+TLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VL+KE+++L +++++ +E Sbjct: 1101 AAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNE 1160 >UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella RepID=D1BP72_VEIPT Length = 1386 Score = 1044 bits (2699), Expect = 0.0, Method: Composition-based stats. Identities = 452/997 (45%), Positives = 619/997 (62%), Gaps = 115/997 (11%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M KR R + K +V+ +P+LL IQ S++ F+E GL+ F + PI+ Sbjct: 1 MFKPEQVGKRTRYTYAKINEVIKMPHLLDIQRKSYEWFLES------GLQNIFNDISPIK 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 SGN L + + LGEP +D+ EC+ R TY+APLRV +RLV + E DIKEQ Sbjct: 55 DNSGNLVLSFEGFSLGEPKYDINECKNRDATYAAPLRVNIRLVNNDPENM-----DIKEQ 109 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMTD GTF+ING ERVIVSQL RSPGV+++ + + G LY++ +IP R Sbjct: 110 EVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGVYYNKE---IDTMGNRLYDSTVIPNR 166 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFF-------------E 226 G+W++ E D + + VRIDR RKLPAT+++RAL + T E ILDLF+ E Sbjct: 167 GAWIELETDASEVVAVRIDRNRKLPATVLVRALGWDTNESILDLFWNGKTDEDGLPVYDE 226 Query: 227 KVIFEIRDNKLQ------MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLE 278 +++ + + Q +E+ + GE + + N ++ + R AR R Sbjct: 227 RIVRTLEKDTTQSADEALVEIYKKLRPGEPPTVESARNLFDNLFFDARRYDLARVGRYKL 286 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + + G+ +A+ +D TGE+I A +++ G ++++ + Sbjct: 287 NKKLGW----RQRMLGQTLAQPIVDPETGEIILDAGVQV-----------GEEQLDIVAN 331 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + + G +E V+ ND + + V P YD Sbjct: 332 SHVFDGEGFAEFYIVN--NDGVESKVICNNCNLP----------------------YD-- 365 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 ++++D+I + L+++ +G G DDIDHLGNRR+R VGE Sbjct: 366 ------------------HRTVTREDMIANISYLLNLMDGAGHTDDIDHLGNRRLRCVGE 407 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQFR+GL R+ER V+ER+++ + +++ PQ +IN +P+ AA+KEFFGSSQLSQFMDQ Sbjct: 408 LLQNQFRIGLTRMERVVRERMTIQETESITPQALINIRPVVAAIKEFFGSSQLSQFMDQT 467 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSLS Y Sbjct: 468 NPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNY 527 Query: 579 AQTNEYGFLETPYR-------------KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 A+ NE+GF+E PYR KV V+D + Y++A EE IAQANS LD Sbjct: 528 AKVNEFGFIEAPYRKVEKVYGKGKDADKVVKVRVSDSVVYMTADEEEGMTIAQANSPLDA 587 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 EG+F + V CR + + D+VDYMDVS ++VVS+G ++IPFLE+DDANRALMGANM Sbjct: 588 EGYFTTEHVACRRGHDVLEVTPDKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANM 647 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQAVP LRA PLVGTGME A DSGV +A+ G V + I + + D Sbjct: 648 QRQAVPLLRAQAPLVGTGMEYTAATDSGVCVLAREAGKVVRCWGNEIHVLRDSD------ 701 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +D Y L K+ RSNQ+TC NQ P V+ G+ V +G VLADGP+TD GELALG N+ VAFM Sbjct: 702 GRVDTYRLNKFLRSNQSTCFNQKPIVNRGDHVVKGQVLADGPATDGGELALGYNVLVAFM 761 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PW GYN+ED+IL+SE + +ED +T+IHI+E C +RDTKLG EEIT ++PN G+ L L Sbjct: 762 PWEGYNYEDAILLSEELCKEDIYTSIHIEEYECDARDTKLGAEEITRELPNTGDDTLKNL 821 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE GI+ IGAEV GDILVGK TPKGET+LTPEE+LLRAIFG+K +V+D+SLRVP+G S Sbjct: 822 DEDGIICIGAEVHPGDILVGKATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGES 881 Query: 926 GTVIDVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLS 961 G V+DV+VFTR+ G E ++ + + Q +K Sbjct: 882 GKVVDVKVFTRENGDELQPGVNKLVRVYIAQKRKIHE 918 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 115/178 (64%), Positives = 140/178 (78%) Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 D + + + G+ IATPVFDGA E ++ E L + P G+ LYDGRTGE + Sbjct: 1135 YDFDKYGMPKPDVAGIHIATPVFDGAHEKDVFETLAIAGRPDDGKTVLYDGRTGEPMDNR 1194 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 VTVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA Sbjct: 1195 VTVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1254 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 YTLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VLLKE++S+G+++++ +E Sbjct: 1255 YTLQELLTVKSDDVVGRVKAYEKIVKGENIPEPGVPESFKVLLKELQSIGLDVKILNE 1312 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 87/214 (40%), Positives = 117/214 (54%), Gaps = 6/214 (2%) Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS--EELQILEAGLFSRIRAVLVAGGVEA 986 I ++ + D + A EI L +E I+ G +LV Sbjct: 787 IHIEEYECDARDTKLGAEEITRELPNTGDDTLKNLDEDGIICIGAEVHPGDILVGKATPK 846 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + + P +R L D+E++ + L + E K ++ K GD+L PGV Sbjct: 847 GETELTPEERLLRAIFGDKEREVRDTSLRVPHGESG----KVVDVKVFTRENGDELQPGV 902 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 K+V+VY+A KR+I GDKMAGRHGNKGV+S++ EDMP+ +GTPV IVLNPLGVPSR Sbjct: 903 NKLVRVYIAQKRKIHEGDKMAGRHGNKGVVSRVMRKEDMPFLPDGTPVQIVLNPLGVPSR 962 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 MNIGQ+LETHLG A +G+G KI A Q V K Sbjct: 963 MNIGQVLETHLGWAVQGLGMKIKATDLHIQNVLK 996 >UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 Tax=Bacteria RepID=RPOB_BACP2 Length = 1196 Score = 1043 bits (2696), Expect = 0.0, Method: Composition-based stats. Identities = 447/1008 (44%), Positives = 626/1008 (62%), Gaps = 75/1008 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 13 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 66 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 67 LEFIDYSLGDPKYPVAESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 119 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F GK +GK + A +IP RG+WL++E Sbjct: 120 PIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGFTATVIPNRGAWLEYE 176 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFE--------IRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL ++++ +ILDL E +K Sbjct: 177 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEILDLIGENEYLRNTLEKDNTENADKAL 236 Query: 239 MELVPERLRGETASFDIEA---NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +E+ GE + + + + + K + ++ K + + Sbjct: 237 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLH-----IKNRLFNQ 291 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A+ +D TGE++ L +L K+ L++G + Sbjct: 292 KLAETLVDPETGEILAEKGQILDRRVLDKV------------LPYLENGIGFRKLYPNGG 339 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 + L I ++ P + G N E Sbjct: 340 VVEDEVELQSI-KIYAPSD------------------------QEGEQVINVIGNAYVEE 374 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 ++ DII + ++ +G G+ DDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V Sbjct: 375 AVKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVV 434 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 +ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGP Sbjct: 435 RERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGP 494 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV- 594 GGLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS +A+ N +GF+ETPYR+V Sbjct: 495 GGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVD 554 Query: 595 -TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 G VT I YL+A EE NYV+AQAN+ L ++G F++D + R +GE+++ R++VDYM Sbjct: 555 PETGKVTPRIDYLTADEEDNYVVAQANALLADDGSFIDDNIIARFRGENTVVPRNRVDYM 614 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DVS +QVVS + IPFLE+DD+NRALMGANMQRQAVP ++ + P+VGTGME DSG Sbjct: 615 DVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGTGMEYVSGKDSG 674 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNED-EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 + + GVV+ V+A I ++ ED + + +D Y+L K+ RSNQ TC NQ P VS Sbjct: 675 AAVICRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQGTCYNQRPIVS 734 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 +G+ V +G++LADGPS + GELALG+N+ V FM W+GYN+ED+I++SER+V++D +T+IH Sbjct: 735 VGDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIH 794 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 I+E +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GD+LVGKVTPKG Sbjct: 795 IEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDLLVGKVTPKGV 854 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEM 951 T+LT EE+LL AIFGEKA +V+D+SLRVP+G G + DV+VF R DG E ++ + Sbjct: 855 TELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRV 914 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + Q +K + G I +L + D P D L Sbjct: 915 YIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPY-LPDGTPIDIMLN 961 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 189/481 (39%), Positives = 260/481 (54%), Gaps = 76/481 (15%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV +G EV G+IL G KGE L ++ + +D+ + +S + Sbjct: 732 IVSVGDEVVKGEILADGPSMEKGELAL--GRNVMVGFMTWDGYNYEDAII-----MSERL 784 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + V+T +E+ + ++ ++ +D+ +E I+ G + + Sbjct: 785 VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDL 844 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + +R L ++ ++ + L + + K Sbjct: 845 LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGG----IIHDVKVFNRED 900 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV ++V+VY+ KR+I GDKMAGRHGNKGVISKI P EDMPY +GTP+DI+L Sbjct: 901 GDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIML 960 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN IG + + Sbjct: 961 NPLGVPSRMN---------------IGQVLELHMGMAARYL------------------- 986 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 G+ IA+PVFDGA+E ++ E L+ + + LYDGRTG Sbjct: 987 --------------------GIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTG 1026 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F+ V+VG MYM+KL H+VDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 1027 EPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1086 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE+LTVKSDDV GR K Y+ IV G++ EPG+PESF VL+KE++SLG++++ Sbjct: 1087 EAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVK 1146 Query: 1339 L 1339 + Sbjct: 1147 I 1147 >UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=D1B5Y3_THEAS Length = 1201 Score = 1035 bits (2676), Expect = 0.0, Method: Composition-based stats. Identities = 439/981 (44%), Positives = 621/981 (63%), Gaps = 83/981 (8%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSE 67 R+ GK+ ++++P L+ +Q S++ F + D + + GL+ F+ VFPI+SY GN Sbjct: 12 RRYLGKQKDLIELPDLVEVQRHSYEWFFQADEDPNFRRLQGLQELFKEVFPIESYDGNFA 71 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L++V Y + P ++E + R +T+S P+R +RLV +IKE+EVY+G+ Sbjct: 72 LEFVRYYVDPPTISIEEARERDLTWSRPIRATIRLVNRSN-------GEIKEEEVYLGDF 124 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+INGTERV+VSQL RS GV+F +D S G+ Y A++IP RG+WL+F+ Sbjct: 125 PVMTDRGTFIINGTERVVVSQLARSAGVYFSAD---LSSPGQETYAAKLIPDRGAWLEFD 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 P + L V+ID R+ K+ + L + E LR Sbjct: 182 LTPSEFLSVKIDNRK------------------------KIPVTMFLKALGVPTDDELLR 217 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 L V+ ++V E + G ++A+ + G Sbjct: 218 -----------------------------LFGATVEEVDVVEEDVRGMLLAEPIVGSD-G 247 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 +I N ++ + L +L + G R+ + ++ETL DPT+ A++EI+ Sbjct: 248 RVIFHKNDRITKEHLDELWKQGRTRVAVWRVDH-----SVAETLEKDPTSSTDEAMLEIF 302 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 R ++P EPP E A +LFF RY+L VGR K NR L + + +L+ +D++ Sbjct: 303 RRLKPNEPPRMENAREHMHSLFFDSRRYNLGRVGRYKLNRRLGLQVDDEQRLLTVEDVVA 362 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-LGDLDT 486 ++ L+ +R+G DDIDHLGNRR+R++GE+ +NQ R+GL+R+ER KER++ + DL + Sbjct: 363 IVNGLLKLRDGLEREDDIDHLGNRRVRAIGELLQNQVRIGLLRMERIAKERMTTIPDLSS 422 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 +D+IN +PISAA++EFFGS QLSQFMDQ NPL+E+TH+RR+SALGPGGL+RERAGFE Sbjct: 423 ATAKDLINVRPISAALREFFGSGQLSQFMDQTNPLAELTHRRRLSALGPGGLSRERAGFE 482 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 RDVH THYGR+CPIETPEG NIGL+ SL+ YA+ NEYGFL TP R+V DG VT E+ YL Sbjct: 483 ARDVHYTHYGRICPIETPEGSNIGLVTSLATYAKINEYGFLVTPRRRVVDGRVTGEVVYL 542 Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 SA +E Y + A++ + E+G + D V R +G+ + +DQVD++DVS +Q+VSV Sbjct: 543 SADDEDEYNVGMASTPVGEDGSILIDEVHVRHRGDIRMVPKDQVDFLDVSPKQIVSVSTG 602 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 LIPFLEHDDANRALMG+NMQRQAVP +RA+ PLVGTG+E +A DSG +A+R G V++ Sbjct: 603 LIPFLEHDDANRALMGSNMQRQAVPLVRAEAPLVGTGIEAKIARDSGSCILARRSGTVEF 662 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 VDA R+VI+ + ++ Y L K+ RSNQ T I+Q P V G+PV+ GDV+ADG Sbjct: 663 VDADRVVIRAED-------GTLNQYRLVKFRRSNQGTVIHQRPLVRKGDPVKAGDVIADG 715 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 + GELALG+N+ VAF+ W GYNFED+IL+S+RVV+ED +T+IHI+E +RDTKLG Sbjct: 716 QACQGGELALGRNVLVAFVSWEGYNFEDAILLSQRVVKEDYYTSIHIEEYEVEARDTKLG 775 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 PEEIT DIPNVG+ AL LDE+GIV IGAEV GDILVGKVTPKGE+ +PEE+LLRAIF Sbjct: 776 PEEITRDIPNVGDDALKNLDENGIVRIGAEVRAGDILVGKVTPKGESDQSPEERLLRAIF 835 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD--KRALEIEEMQLKQAKKDLSEEL 964 GEKA +V+DSSLRVP+G G V+ ++ +R+ +D E+ ++ + Q +K + Sbjct: 836 GEKAREVRDSSLRVPHGEGGKVVAIKRLSREHNSEDLSPGVNEVVKVYVAQFRKITEGDK 895 Query: 965 QILEAGLFSRIRAVLVAGGVE 985 G + +L + Sbjct: 896 MAGRHGNKGVVSKILPEEDMP 916 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 261/490 (53%), Gaps = 81/490 (16%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V G V GD++ G+ GE L +L A + + +D+ L +S V Sbjct: 699 LVRKGDPVKAGDVIADGQACQGGELAL--GRNVLVAFVSWEGYNFEDAIL-----LSQRV 751 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + +T +E+ + ++ ++ +D+ +E I+ G R + Sbjct: 752 VKEDYYTSIHIEEYEVEARDTKLGPEEITRDIPNVGDDALKNLDENGIVRIGAEVRAGDI 811 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + D+ P +R L ++ ++ + L + E K ++ Sbjct: 812 LVGKVTPKGESDQSPEERLLRAIFGEKAREVRDSSLRVPHGEGGKVVAIKRLSREH---N 868 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 +DL+PGV ++VKVY+A R+I GDKMAGRHGNKGV+SKI P EDMP+ +GTPVD+VL Sbjct: 869 SEDLSPGVNEVVKVYVAQFRKITEGDKMAGRHGNKGVVSKILPEEDMPFLSDGTPVDVVL 928 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRM +G ++ Sbjct: 929 NPLGVPSRM---------------NLGQVFETVMGFVA---------------------- 951 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL------KLGDLPTSGQIRL 1212 + G +ATPVF+GA + EI +L+ K +L +I L Sbjct: 952 -----------------MHNGWKVATPVFEGADQEEIFQLVDKIRENKYPELTRDCKITL 994 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 YDGRTGE ++ VTVG MYMLKL HLVDDK+HARSTG YSL+TQQPLGGK QFGGQRFGE Sbjct: 995 YDGRTGEPMDKKVTVGVMYMLKLIHLVDDKIHARSTGPYSLITQQPLGGKTQFGGQRFGE 1054 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 MEVWALE YGAA+ LQE+LTVKSDD+ GR K Y+ IV G + +PG+PESF VL+KE++ Sbjct: 1055 MEVWALEGYGAAHMLQEILTVKSDDIRGRLKTYERIVKGQNLAKPGVPESFRVLIKELQG 1114 Query: 1333 LGINIELEDE 1342 LG+++E+ E Sbjct: 1115 LGVDVEIVYE 1124 >UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira RepID=C0QWX6_BRAHW Length = 1173 Score = 1030 bits (2664), Expect = 0.0, Method: Composition-based stats. Identities = 449/969 (46%), Positives = 620/969 (63%), Gaps = 74/969 (7%) Query: 5 YTEKKRI---RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVF 57 + +K R+ R +F + V++ P LL+IQ +S++ F+++D GL+ S+F Sbjct: 19 FAKKYRMENGRVNFSRTASVIEPPDLLAIQKESYESFLQKDVPENKRKNEGLQEVLTSIF 78 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 PI + + +++++SY +GEP +E + R TY+ P ++K++L + + E I Sbjct: 79 PIVASNEKMQIEFISYSIGEPKITEKEARRRDKTYAYPFKIKVQLTVRDPE-------RI 131 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 EQE+++G+IP MTD GTF++NG ERVIVSQ+HRSPGV F+ S ++ A+II Sbjct: 132 IEQEIFVGDIPAMTDRGTFIVNGAERVIVSQIHRSPGVVFN------RSDRDAMFVAKII 185 Query: 178 PYRGSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDN 235 P RG+WL+FE D KD ++VRIDR++KLP T+ LRA+ T E+IL LF+E + Sbjct: 186 PDRGTWLEFELDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFYEVDNISL--E 243 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 KL E E L G + + ++ ++I P E Sbjct: 244 KLSDENSKEALIGRRSYSTVYDT--------------------ENPDEIILNPGE----- 278 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 I+ + E + + K I L + I TL D Sbjct: 279 -----LINPNLAERLLMSG---------------IKEISVLNMEAIKDNVTIINTLDKDT 318 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T ++ A +IY ++RPGEP E +L F Y L VGR K N+ L E E Sbjct: 319 TKNQEEACTKIYNVIRPGEPALIENVVRTCNDLVFDPKSYALGDVGRYKLNKRLNFPESE 378 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 +L DII+ ++ LI + + ++DDIDHLGNRR+RSVGE+ Q + G R+ER Sbjct: 379 QDKVLRHKDIIETIRFLIKVFINEEQLDDIDHLGNRRVRSVGELLSIQIKAGFTRMERIA 438 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 KER+ + D++ + PQ +++ K I A +KEFFG++QLSQFMDQNNPLSEITHKRR++ALG Sbjct: 439 KERMQMQDMEAVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQNNPLSEITHKRRLNALGQ 498 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGLTR+RAGFEVRDVH THYG++CPIETPEGPNIGLI SL+ YA+ N++GFLETPYRKV Sbjct: 499 GGLTRDRAGFEVRDVHHTHYGKICPIETPEGPNIGLIVSLATYAKINKHGFLETPYRKVV 558 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 DG VTDEI YL+A +E Y IA AN+ L+E+G F ++L++ R + E S DQV YMDV Sbjct: 559 DGKVTDEIEYLTAHDEEKYHIADANAPLNEDGTFKDNLISTRFRSEFPYSSPDQVQYMDV 618 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV-DSGV 714 S QQ+VS+ +SLIPFLEHDDANRALMG+NMQRQ+VP L + P+VGTG+E + +G+ Sbjct: 619 SPQQIVSLSSSLIPFLEHDDANRALMGSNMQRQSVPLLYPEAPIVGTGVEAKICQPGTGI 678 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 AKR G V V + IVIK + + +D+Y L KY R+NQ+T +Q P V++G Sbjct: 679 AVHAKRAGKVIKVVHNEIVIKPTKQ---NSDDDLDVYELVKYQRTNQDTNYHQRPVVNVG 735 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V+ G +LADGP+TD GELALG+N+ AFM + GYNFED+IL+S R+VQED FT+IHI+ Sbjct: 736 DVVKAGGLLADGPATDHGELALGRNVLAAFMIFEGYNFEDAILLSRRLVQEDVFTSIHIE 795 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 E + +R+TKL E IT DIPNV +AA LDE GIV IGA+V GDILVGKVTPKGET+ Sbjct: 796 EFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKAGDILVGKVTPKGETE 855 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 +TPE +LL +IFGEKA DVKD+SLRVP+G GTVIDV+V++R+ ++ K +E E +++ Sbjct: 856 ITPEYRLLHSIFGEKARDVKDTSLRVPHGKDGTVIDVRVYSRENGDELKPGVE-EVVKVF 914 Query: 955 QAKKDLSEE 963 AKK + +E Sbjct: 915 LAKKRIIQE 923 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 195/479 (40%), Positives = 262/479 (54%), Gaps = 66/479 (13%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V +G V G +L G T GE L +L A + + +D+ L V V Sbjct: 731 VVNVGDVVKAGGLLADGPATDHGELAL--GRNVLAAFMIFEGYNFEDAILLSRRLVQEDV 788 Query: 929 ---IDVQVFTRDGVE--KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 I ++ F+ + E DK + + + A +E I+ G + +LV Sbjct: 789 FTSIHIEEFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKAGDILVGKV 848 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + P R L ++ + + L + + + ++ ++ GD+L Sbjct: 849 TPKGETEITPEYRLLHSIFGEKARDVKDTSLRVPHGKDGTVIDVRVYSR----ENGDELK 904 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV ++VKV+LA KR IQ GDKMAGRHGNKGV+++I PIEDMP+ E+GTPVDI LNPLGV Sbjct: 905 PGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLEDGTPVDICLNPLGV 964 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMN IG I +L Sbjct: 965 PSRMN---------------IGQVIEMLLGWS---------------------------- 981 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + G+ A PVF+G KE ++E + +G++RLYDGRTGE F+ Sbjct: 982 -----------GHKMGLKYACPVFEGPKEEALREAFVASGMNPNGKVRLYDGRTGEPFKN 1030 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V VGYMYMLKLNHLV+DK+HARSTG YSLVTQQPLGGK+QFGGQR GEMEVWALEAYGA Sbjct: 1031 DVAVGYMYMLKLNHLVEDKVHARSTGPYSLVTQQPLGGKSQFGGQRLGEMEVWALEAYGA 1090 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 A LQE LTVKSDD+ GR ++Y++IV G+ PG+PESFNVL++E+R LG+NI + DE Sbjct: 1091 ANMLQEFLTVKSDDMTGRARIYESIVKGDVISSPGIPESFNVLVQELRGLGLNITIHDE 1149 >UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=Veillonella RepID=A3FMP8_9FIRM Length = 1124 Score = 1025 bits (2651), Expect = 0.0, Method: Composition-based stats. Identities = 498/1210 (41%), Positives = 688/1210 (56%), Gaps = 152/1210 (12%) Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 D GTF+ING ERVIVSQL RSPGV++D + + G LY + +IP RG+W++ E D Sbjct: 1 DTGTFIINGAERVIVSQLVRSPGVYYDKE---IDTMGNRLYASTVIPNRGAWIELETDAN 57 Query: 192 DNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRD---------------- 234 + + VRIDR RK+PATI++RAL + T E IL+LF+ + E + Sbjct: 58 EVVSVRIDRNRKIPATILVRALGWDTNESILELFWNGQVDEDGNPIYDERLLRTLEKDTT 117 Query: 235 ---NKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +E+ + GE + + N ++ + R AR R + Sbjct: 118 ESSEEALVEIYKKLRPGEPPTVESARNLFDNLFFDPRRYDFARVGRYKVNKKLGW----K 173 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 + + G+++A+ + TGE+I A + + + + +SG E +D Sbjct: 174 QRMFGQLLAQPIFNPETGEVILDAGTHIGEEEIEIVEKSGVFAGEGFAEFYIDI------ 227 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D + A V P E Sbjct: 228 --------DGVHAKVICNNCNLPYEF---------------------------------- 245 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 ++++D+I + L+++ +G G DDIDHLGNRR+R VGE+ +NQFR+GL Sbjct: 246 --------RTVTREDMIANISYLLNLMDGVGHTDDIDHLGNRRLRCVGELLQNQFRIGLT 297 Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 R+ER V+ER+++ + D + PQ +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+THKRR Sbjct: 298 RMERVVRERMTVQESDMITPQALINIRPVVAAVKEFFGSSQLSQFMDQTNPLGELTHKRR 357 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSLS YA+ NE+GF+E Sbjct: 358 LSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNYAKVNEFGFIEA 417 Query: 590 PYRKVTDG-------------VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 PYRKV VTD + Y++A EE VIAQANS LDEEG FV D + C Sbjct: 418 PYRKVEKIYGTGDEADKIVKVRVTDTVAYMTADEEEGMVIAQANSVLDEEGCFVSDHIAC 477 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 RS + + D+VDYMDVS ++VVS+G ++IPFLE+DDANRALMGANMQRQAVP LRA Sbjct: 478 RSGHDVLEVTPDKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANMQRQAVPLLRAQ 537 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 PLVGTGME A DSGV +AK G V +I + +++ +D+Y + K+ Sbjct: 538 APLVGTGMEYTAATDSGVCILAKAAGTVVRCWGDQIHVMRDDN------GRVDVYKMNKF 591 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQ+TC NQ P V G+ V G VLADGP+TD GELALG N+ VAFMPW GYN+ED+I Sbjct: 592 LRSNQSTCFNQKPIVHRGDHVVAGQVLADGPATDGGELALGFNILVAFMPWEGYNYEDAI 651 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 L+SE + +ED +T+IHI+E C +RDTKLG EEIT ++PN G+ +L LD GI+ IGAE Sbjct: 652 LLSEDLCKEDIYTSIHIEEYECDARDTKLGAEEITRELPNTGDDSLKNLDADGIICIGAE 711 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGK TPKGET+LTPEE+LLRAIFG+K +V+D+SLRVP+G SG ++DV+VFTR Sbjct: 712 VKPGDILVGKATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGESGKIVDVKVFTR 771 Query: 937 D-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + G E ++ + + Q +K + G + V+ + D P Sbjct: 772 ENGDELQPGVNKLVRVYIAQKRKIHEGDKMAGRHGNKGVVSRVMRREDMPF-LPDGTPVQ 830 Query: 996 RWLE------------------------LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 L LG+ ++ Q++Q+ E+ + + +E Sbjct: 831 IVLNPLGVPSRMNIGQVLETHLGFAVQGLGMKIKDTDMQIKQVLER-AKTDASYWDNIEE 889 Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 + + D+L + + V V + ++ + N I D+ E Sbjct: 890 LKGLYARLDELKAQIAQDVTVA-----HLDVDEE---------ITQLTNDIMDLVKVETE 935 Query: 1092 TPVDIV-----LNPLGVPSRMNIGQILETH-LGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 + + L R ++ + +E + + ++ L + Q ++ E I Sbjct: 936 RQLSALGGYTRYRELKDIERSHMAKQIECFDTDESVPDMDPELEKELGRLQSTVRILETI 995 Query: 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP 1205 A + +++R+ ++ + D E + + G+ IATPVFDGA E ++ E L+L Sbjct: 996 DEAREKRSEIRKSLEAIGY-DYEQYGMPKPDVAGIHIATPVFDGASEVDVFEALQLAGKS 1054 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 G+ LYDGRTGE + VTVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQF Sbjct: 1055 EDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQF 1114 Query: 1266 GGQRFGEMEV 1275 GGQRFGEMEV Sbjct: 1115 GGQRFGEMEV 1124 >UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP8_TREPR Length = 1290 Score = 1015 bits (2624), Expect = 0.0, Method: Composition-based stats. Identities = 437/1336 (32%), Positives = 665/1336 (49%), Gaps = 93/1336 (6%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP 78 P LL +Q +F + + YGL+ S+FP+ S+ G + ++ V Y +G+P Sbjct: 20 PYPDLLGVQRSAFNRLTQHSTHPSARNPYGLQRLLFSMFPMMSHDGAALIELVKYTIGKP 79 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYE-REAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 EC G+TYSAPL + L++ V+ + +VY+G++P+MT G+F+ Sbjct: 80 CSTDAECLRSGLTYSAPLSLTLKITSRTPSNDGTWHVRYSRSHQVYLGDMPMMTRKGSFI 139 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 + GTER ++ +R+ G+ F + + + RI+P+RG+WL+ LF R Sbjct: 140 VRGTERTLLVLQNRAYGLGFVPYLTYSMYDTPTVCSLRIVPHRGTWLELSIQDGAVLF-R 198 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 + +PATI+L+ +T+ I + + I + + + + FD Sbjct: 199 FNAGVFMPATILLKGFGASTDAIAGMLTPRAGIAISPGGASIAIDLSDIAFDVQHFDT-- 256 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI--DESTGELICAANM 315 R AR R+L K L P+ VV K + D S G + Sbjct: 257 ---------RLGHARLTRRLAKSRGSLEGRPLHIEDADVVNKFELASDASLGGRTVGSGT 307 Query: 316 ELSLDLLAKLSQSGHKRIETLFT-NDLDHGPYISETLRVDPTNDRLSALVEI---YRMMR 371 LS +++ + + + + YI+ TLR+D T D A I +MR Sbjct: 308 LLSQRVISMARADRESYLAVVNRCHHGAYLRYIARTLRMDRTVDPHDARACIAGHIGIMR 367 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 +P +A SLF+ + + Y L+ GR + N + R +G L DI +K Sbjct: 368 HLDPA---SAHSLFQGIMENARAYCLTPCGRSQLNARIGRHFSQGGDTLDARDIALSLKL 424 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD 491 LI+ DD+D + NR+ R + + R + ++R ++ + Sbjct: 425 LINATRRNVRPDDVDDMSNRKARDACDALCDALRPAFLGLKRRLRSH-TANSRPGEAIAI 483 Query: 492 MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVH 551 ++ ++ + +S+L+Q +DQ NPL+E+THKRR++ + RA RDVH Sbjct: 484 LLGLHAVTHQAYDELTNSRLAQPLDQTNPLAEVTHKRRVAIIAGSDSGPRRAPLGARDVH 543 Query: 552 PTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE 611 THYGR+CP+ETPEG NIGLI SL+ A+ + G + PY Y+S EE Sbjct: 544 ATHYGRLCPVETPEGQNIGLIASLAARARIDAQGTILAPYVVTRRNATRAAARYISPQEE 603 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + ++ H + R ++ +V +D + + +S + IPFL Sbjct: 604 ----VGAMSAPSAIVPHSRRRTIMARIGHGVAMVHPSEVILVDGANEMALSAATATIPFL 659 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EH+DA RALMG+NMQRQAVP KP V TGME+AVA + V A+ G V YVD Sbjct: 660 EHNDACRALMGSNMQRQAVPCCYPRKPRVHTGMEQAVAQHAMVAIRARYAGRVAYVDPLH 719 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 I I + + Y L + R+NQ T + P V G V+ GDV+ADGP+++ Sbjct: 720 IAIVP----ICENQGHACTYRLARNVRTNQGTQADHRPTVIPGSYVQAGDVIADGPASEG 775 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 G LALG+++ VAFMPW GYN+EDS+ VSE +++ +T++H+ E++ ++ Sbjct: 776 GVLALGRDVLVAFMPWEGYNYEDSVAVSEALLRNGAYTSVHLDEVSVDMDGDDGCGTVLS 835 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 +P + ++ +LDE GIV +G+ V GDI+VG+++P+ LLR Sbjct: 836 RCVPGITQSQRDRLDERGIVRVGSMVYPGDIIVGRISPRHAGIAPKGNSLLRTALATSEQ 895 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL 971 +DSS+R G++GTV V++R IE DL + E L Sbjct: 896 ANRDSSIRATQGMTGTV----VYSR-----------IEPCNQPDVHDDLPGQCA-GEQSL 939 Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLEL-GLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 RI+ G A RD + + +EQ A L H ++K Sbjct: 940 LRRIQH-----GARATYCWASARDPYFWMPRNGLAAAPYAMEQHASPKAGL-HPYDKAT- 992 Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 + +KV +A + +QPGDK++GRHGNKGV+SK+ PIEDMPY +N Sbjct: 993 -----------------RTLKVAIASRIDLQPGDKVSGRHGNKGVVSKVVPIEDMPYMKN 1035 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD 1150 G VD+++NPLGVPSRMN+GQ+LETH+G+A+ + + + A+ +D Sbjct: 1036 GRSVDVIVNPLGVPSRMNVGQLLETHIGLASIAL--------EARSNTAEHLLCSSAYHD 1087 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK---------L 1201 D + + R + P FDG EAEI+ + + Sbjct: 1088 AMCHGLMACDGRCYPACSAAGGSPGHRVTLCTLCPAFDGPSEAEIRSMARAAATQGVRFK 1147 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 L Q LYDGRTG Q++RPVTVG+MY LKLNHL +K+H+RSTG YSLVT+QPLGG Sbjct: 1148 HGLHRRHQAILYDGRTGTQYDRPVTVGFMYYLKLNHLARNKVHSRSTGPYSLVTEQPLGG 1207 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 KA+ GGQR GEMEVWALEA+GAA+TLQEMLT+KSDDV GR +++ +I + G PE Sbjct: 1208 KARSGGQRVGEMEVWALEAHGAAFTLQEMLTIKSDDVGGRRRVHDHIAQDVRPLSYGTPE 1267 Query: 1322 SFNVLLKEIRSLGINI 1337 S +L++E+RSL +++ Sbjct: 1268 SIGLLVRELRSLCVDV 1283 >UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Tax=Bacteria RepID=RPOB_LEUCK Length = 1204 Score = 1013 bits (2619), Expect = 0.0, Method: Composition-based stats. Identities = 440/971 (45%), Positives = 597/971 (61%), Gaps = 84/971 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R R+ + +VLDVP L+ IQ S+Q F+++ G++ F + PI + G Sbjct: 10 KHRTRRSYASIKEVLDVPNLIEIQTASYQWFLDE------GIKEMFGDIMPIDDFQGTLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+YV Y+L EP +++ E + YSAPL V LRL +E +IK Q+V+ GE Sbjct: 64 LEYVDYQLMEPKYNIDEAREHDANYSAPLHVTLRLTNHE-------TGEIKSQDVFFGEF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT+ GTF+ING ERVIVSQL RSPG++++ + K +G+ Y +IP RG+WL++E Sbjct: 117 PLMTEQGTFIINGAERVIVSQLVRSPGIYYNQENDK---NGRPRYGTTVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFE--------------KVIFEI 232 D K VRIDR RKL T ++RAL + ++ I+D+F + K + + Sbjct: 174 TDAKGIANVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQYDALNMTLEKDVHKDMSDS 233 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPVE 290 R + ++ GE + D V + + R A R + L Sbjct: 234 RVEEALKDVYERLRPGEPKTADSSRALLVARFFDPKRYDLASVGRYKINKKLSL----KT 289 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + + +A+ D +GE+I + +++KLS L D +T Sbjct: 290 RLLNQTLAETLADPDSGEVIAEKGTLVDKTVMSKLS-------PFLDRED-------FKT 335 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 P+ D A++E EP T + + E+ E L G + N Sbjct: 336 TTYTPSGD---AVLE--------EPVTLQKIK--IESPENPEKTLLLIGNGHIDENDR-- 380 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + DI+ M ++++ G G VDDIDHLGNRRIRSVGE+ +NQFR+GL R Sbjct: 381 --------TVRPADILAGMNYFLNLQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLTR 432 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 +ER V+ER+S+ D +T+ PQ +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+ HKRR+ Sbjct: 433 MERVVRERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGEMNHKRRL 492 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTR+RAG EVRDVH THYGR+ PIETPEGPNIGLINSL+ Y + N+YGF+ETP Sbjct: 493 SALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSLATYGRINKYGFIETP 552 Query: 591 YRKV--TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 YR+V T +VTD+I YL+A EE NY++AQANS L+++G FV D V R E+ D Sbjct: 553 YRRVDWTTHMVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVHDTVMARFGEENIETPID 612 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 ++DYMDVS +QVVSVG + IPFLE+DD+NRALMGANMQRQAVP L PLVGTG+E Sbjct: 613 RIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAVPLLDPHAPLVGTGIEYKA 672 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 A DSGV +++ GVV+YVD +I ++ + + +D Y L K+ RSN NQ Sbjct: 673 AHDSGVAMISRAAGVVEYVDGRQIRVRREDGQ-------LDTYELMKFRRSNGGKNYNQK 725 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P V GE VE +VLADGPS + GELALGQN +AFM W GYNFED+I+++ER+V+ED + Sbjct: 726 PIVHEGEHVEADEVLADGPSMEKGELALGQNPLIAFMTWQGYNFEDAIVLNERLVREDVY 785 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+IHI+E +RDTKLGPEE+T +IPN GE L LD GI+ +GAEV GDILVGKVT Sbjct: 786 TSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQLKDLDADGIIRVGAEVHDGDILVGKVT 845 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALE 947 PKG T+L+ EE+LL AIFGEKA +V+D+SLRVP+G G V +V+++T + G E Sbjct: 846 PKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGVVQNVRIYTPENGDELAPGVNM 905 Query: 948 IEEMQLKQAKK 958 + + + Q +K Sbjct: 906 MVRVYIAQKRK 916 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 179/484 (36%), Positives = 261/484 (53%), Gaps = 76/484 (15%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV+ G V ++L G KGE L + L A + + +D+ + ++ + Sbjct: 727 IVHEGEHVEADEVLADGPSMEKGELAL--GQNPLIAFMTWQGYNFEDAIV-----LNERL 779 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL----SEELQILEAGLFSRIR------AV 978 + V+T +E+ ++ ++ +++ ++L+ L+A R+ + Sbjct: 780 VREDVYTSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQLKDLDADGIIRVGAEVHDGDI 839 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + +R L ++ ++ + L + + Sbjct: 840 LVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGG----VVQNVRIYTPEN 895 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+LAPGV +V+VY+A KR+IQ GDKMAGRHGNKG +S + P EDMPY +GTP+DI+L Sbjct: 896 GDELAPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYMPDGTPIDILL 955 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 +P+GVPSRMN IG + L + Sbjct: 956 SPMGVPSRMN---------------IGQVLELHLGFAAK--------------------- 979 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + G+ +A+PVFDGA + EI+ L+ LP G+ +YDGRTG Sbjct: 980 ------------------KLGIHVASPVFDGASDDEIEAALREAGLPQDGKSVVYDGRTG 1021 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F++ V VG M+ +KL H+VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 1022 EAFDKRVGVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1081 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE+LT KSDDV GR K+Y++I+ G PG+PESF VL+KE+++LG++++ Sbjct: 1082 EAYGAAYTLQEILTYKSDDVAGRVKVYESIIKGEPIPRPGVPESFRVLVKELQALGLDMQ 1141 Query: 1339 LEDE 1342 + D Sbjct: 1142 VLDN 1145 >UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax=Borrelia RepID=RPOB_BORHD Length = 1155 Score = 1007 bits (2603), Expect = 0.0, Method: Composition-based stats. Identities = 449/988 (45%), Positives = 634/988 (64%), Gaps = 66/988 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD------PEGQYGLEAAFRSVFPIQSY 62 KR+ GK ++LD+P L+ IQL+S++KF++ + P GLE+ FR VFP++S Sbjct: 3 KRVHLGQGKAEEILDLPNLIEIQLNSYEKFLQLERLKTNRPLLNEGLESVFRDVFPMKSS 62 Query: 63 SGNSELQYVSYRLG--EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G L+Y Y + F +EC+ +G +Y A L+++L L T +I+++ Sbjct: 63 NGEVALEYEKYYIEYNSLSFTEKECKRKGQSYEAVLKIRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMTD GTF++NG ERVIVSQ+HRSPGV F +K LY ARIIPYR Sbjct: 116 DVYMGTIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKD--------LYYARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL T + I++ F++ E+ ++ Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVNEDT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + G+ + +I + G +IT + I ++ VK I++ +++ V Sbjct: 226 ----KREITGQYLATNIIIKENMTYRAGDKITLQDIEDFLQNGVKEIDL-IDFDGYDSVP 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + S L C + L + G K + Sbjct: 281 GKHFISSDVILNCFEKEDAYFSL-----KDGFKEL------------------------S 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R S ++ +Y ++ PGEP + + AES N+FFSE RYDL VGR K ++ +++ S Sbjct: 312 RESVMLAVYSVLLPGEPISIDNAESDLRNVFFSEKRYDLGHVGRYKLSKKFGLDDLTTS- 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DI++ + L+ I +G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ YA+ N+YGFLETPYRKV DG Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLETPYRKVVDGK 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VTDEI YLSAI+E IAQAN+ ++ EG++++DL++ R G+ + +DYMDVS + Sbjct: 551 VTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVSGDYTTMIPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGMER VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERIVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G+V + +IVI+ + + +D Y L KY R+NQ+T N V G+ V Sbjct: 671 KRSGIVVLATSKKIVIRPEDAA---DDHDLDEYELAKYERTNQDTSFNHSVLVKEGQVVN 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +G+++ADGP+T GE+ALG N+ V F+PWNG+N+ED+IL+SER+++ED +T+IHI+E + Sbjct: 728 KGEIIADGPATRYGEVALGNNLLVGFIPWNGFNYEDAILISERIIKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++TADIPNV L+KLDE+GIV IG V GDIL+GKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTADIPNVSGKILNKLDENGIVRIGTYVKPGDILIGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE-KDKRALEIEEMQLKQAK 957 KLL +IFGEKA DVK++SL+VP+G GTVIDVQ T+D V EI ++ + + + Sbjct: 848 FKLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDVSNLPPGVDEILKVYIAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVE 985 K + G + +L + Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMP 935 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 183/486 (37%), Positives = 254/486 (52%), Gaps = 80/486 (16%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V G V G+I+ G T GE L LL + +D+ L +S + Sbjct: 719 LVKEGQVVNKGEIIADGPATRYGEVAL--GNNLLVGFIPWNGFNYEDAIL-----ISERI 771 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 I ++T +++ + ++ ++ D+ +E I+ G + + + Sbjct: 772 IKEDLYTSIHIKEFSIEVRETKLGPEKVTADIPNVSGKILNKLDENGIVRIGTYVKPGDI 831 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 L+ + D P + L ++ K + L + + ++IT+ Sbjct: 832 LIGKVTPKSEGDITPEFKLLTSIFGEKAKDVKNNSLKVPHGTEGTVID------VQRITK 885 Query: 1039 GD--DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 D +L PGV +I+KVY+A KR+++ GDKMAGRHGNKGV++KI P+EDMPY +GTP+DI Sbjct: 886 DDVSNLPPGVDEILKVYIAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDI 945 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 LNPLGVPSRM IG + + L + Sbjct: 946 CLNPLGVPSRM---------------NIGQLMESQLGLAGKYL----------------- 973 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 G PVF+ A I+E LK + + LYDG Sbjct: 974 ----------------------GEYYDVPVFESATNECIQEKLKKAGFNETSKAVLYDGY 1011 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TGE FE V VG +YMLKL+HLVDDKMHARSTG YSLV+QQPLGGKAQFGGQR GEMEVW Sbjct: 1012 TGEPFENEVMVGIIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRLGEMEVW 1071 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 ALEAYGAA+TLQE+LTVKSDD++GR K+Y+NIV G G+PESFNVL++E+R LG + Sbjct: 1072 ALEAYGAAHTLQELLTVKSDDMSGRVKIYENIVKGIPTNVSGIPESFNVLMQELRGLGFD 1131 Query: 1337 IELEDE 1342 + + D+ Sbjct: 1132 LSIYDD 1137 >UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY37_9BACL Length = 1267 Score = 1000 bits (2586), Expect = 0.0, Method: Composition-based stats. Identities = 433/1022 (42%), Positives = 620/1022 (60%), Gaps = 76/1022 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R R+ + + +V+D+P L+ IQ S+ KF+E GL+ F+ V PI+ + Sbjct: 8 KHRQRRSYARISEVIDLPDLIEIQTLSYDKFLE------TGLKDVFKDVSPIEGNNDKLS 61 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y+LG P +DV E + R TYSAPLRV++RL+ ER+ +IKEQEV+MGE+ Sbjct: 62 LEFIDYKLGTPKYDVDESKERDATYSAPLRVRVRLINKERD-------EIKEQEVFMGEL 114 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT+ GTF+ING ERVIVSQL RSP V+F D + Y +IP RG+WL+FE Sbjct: 115 PLMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVKNIPNAYKTTVIPNRGAWLEFE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIF--------EIRDNKLQ 238 D K ++ RIDR RK+P T ++RAL + +++ I+ LF E + Sbjct: 175 KDIKGLVYARIDRTRKIPLTTLIRALGFESDESIIKLFGEDTELLNTLEKDENLDTGTAL 234 Query: 239 MELVPERLRGETASFDIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 + + GE A+ + G+ + + + +L E + + Sbjct: 235 KVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVGRYKLNNKLHV-----GERLENQ 289 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 ++ + +D TGE++ +L+ +++ + + + + + +D Sbjct: 290 ILVEPIVDTETGEILVEKGTKLTREIIDGIYEELGTTANVVEFDMNES---------LDG 340 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 ++ L +I ++ G + D L +G N+ +L Sbjct: 341 SDSLKLQLFKIVNQVKVGNDYDIDELT----------DDQVLHVIGNGAPNKDVL----- 385 Query: 416 GSGILSKDDIIDVMKKLIDIRNGK-----------GEVDDIDHLGNRRIRSVGEMAENQF 464 L+ DI+ + + + + G VDDIDHLGNRR+R +GE+ +NQ Sbjct: 386 ---TLTIADIVASINYYLLLIRTRRNNDGFEFELIGRVDDIDHLGNRRLRCIGELLQNQI 442 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 RVG+ R+ER V+ER+S+ D + + PQ +IN +P++A +KEFFGSSQLSQFMDQ NPLSE+ Sbjct: 443 RVGISRMERVVRERMSIQDTNEITPQQLINVRPVTAIIKEFFGSSQLSQFMDQVNPLSEL 502 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR+SALGPGGLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS +A+ NE+ Sbjct: 503 THKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFARINEF 562 Query: 585 GFLETPYRKVT-----DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 GF+ TPYRKV VT+ + YL+A +E YV+AQ+ +N+DE+G+FV++ V CR + Sbjct: 563 GFIMTPYRKVEFDGEGRPYVTENVQYLTADQEDKYVVAQSTANVDEKGYFVDEEVVCRFR 622 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 G++++ R+ +++MDVS +QVVS + IPFLE+DD+NRALMGANMQRQAVP + + P Sbjct: 623 GDNTVKPREMMNFMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMITEAPF 682 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED-EMYPGEAGIDIYNLTKYTR 758 VGTGME A DSG +AK G+V+YVD ++I ++ E E + +D Y + K+ R Sbjct: 683 VGTGMEHLAARDSGAAVIAKYPGIVEYVDGAKIKVRRIETLEGKEIKGDLDTYVIHKFVR 742 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 SN +T NQ P V +G+ VE D+LADGPS D GELALG+N+ VAF+ W+GYN+ED++++ Sbjct: 743 SNHSTAYNQKPIVKVGDRVEPKDILADGPSMDKGELALGKNLVVAFVNWDGYNYEDAVIM 802 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 SER+V++D +T+IH++E +RDTKLGPEEIT +IPNVGE AL LD GI+ IGAEV Sbjct: 803 SERLVKDDVYTSIHVEEYETDARDTKLGPEEITREIPNVGENALRNLDARGIIRIGAEVK 862 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-D 937 GDILVGKVTPKG T+ TPEEKLL AIFG K+ +V+D+SLRVP+G G V DV++F R D Sbjct: 863 DGDILVGKVTPKGLTEQTPEEKLLYAIFGAKSKEVRDTSLRVPHGADGVVADVKIFKRED 922 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 G E E+ + + Q +K + G I +L + D P D Sbjct: 923 GAELPNGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPY-LPDGTPVDVM 981 Query: 998 LE 999 L Sbjct: 982 LN 983 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 185/479 (38%), Positives = 248/479 (51%), Gaps = 66/479 (13%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVS 925 IV +G V DIL G KGE L + L+ A + +D+ S R+ Sbjct: 754 IVKVGDRVEPKDILADGPSMDKGELAL--GKNLVVAFVNWDGYNYEDAVIMSERLVKDDV 811 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEM--QLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 T I V+ + D + EI + + + I+ G + +LV Sbjct: 812 YTSIHVEEYETDARDTKLGPEEITREIPNVGENALRNLDARGIIRIGAEVKDGDILVGKV 871 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 ++ P ++ L + K+ + L + + K K G +L Sbjct: 872 TPKGLTEQTPEEKLLYAIFGAKSKEVRDTSLRVPHGADG----VVADVKIFKREDGAELP 927 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 GV ++V+V++ KR+I+ GDKMAGRHGNKGVIS I P EDMPY +GTPVD++LNPLGV Sbjct: 928 NGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPYLPDGTPVDVMLNPLGV 987 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMN IG + L + Sbjct: 988 PSRMN---------------IGQVLELHLGMAAK-------------------------- 1006 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + G+ +ATPVFDGA + ++ + + + LYDGRTGE F+ Sbjct: 1007 -------------QLGIHVATPVFDGATDEDVWSTVAEAGMAKDAKTVLYDGRTGEPFDS 1053 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V+VG MYM+KL H+VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA Sbjct: 1054 RVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1113 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 AYTLQE+LT KSDD NGR K Y+ IV G + PG+PESF VL+KE+++LG++ + D Sbjct: 1114 AYTLQEILTYKSDDTNGRVKTYEAIVKGENIPRPGVPESFRVLMKELQALGMDFRVMDN 1172 >UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Tax=Spirochaetaceae RepID=RPOB_BORAP Length = 1155 Score = 984 bits (2544), Expect = 0.0, Method: Composition-based stats. Identities = 449/988 (45%), Positives = 637/988 (64%), Gaps = 66/988 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD------PEGQYGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ D P GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKNKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L T +I+++ Sbjct: 63 NGDVALEYERYYIENDTLNFTEKECKRKGQSYEAVLKVRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMT+ GTF+ING ERVIVSQ+HRSPGV F +K LY+ARIIPYR Sbjct: 116 DVYMGTIPLMTERGTFIINGAERVIVSQIHRSPGVVFYKEKD--------LYSARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL + T E+I++ F+ ++ + Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVEEGT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 L G+ + I +Y G +IT + + ++ V IE+ V++ V+ Sbjct: 226 ----KRDLPGQYLAKSINIRENMYYRAGDKITLQDVEDFLQNGVNEIEL-VDFDGYNDVS 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 Y S L C + L + G K + Sbjct: 281 GKYFVSSNVILNCLEKEDAFFAL-----KDGSKELP------------------------ 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + S ++ +Y + PGEP + + AE+ + +FFSE RYDL VGR K ++ +++ S Sbjct: 312 KESVMLAVYGALFPGEPISIDNAENDLKTIFFSERRYDLGRVGRYKLSKKFGSDDLSTS- 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DDI++ + L+ I G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ Y++ N+YGFLETPYRKV +G Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLETPYRKVVNGE 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT+E+ YLSAI+E IAQAN+ + +G ++EDLV+ R G+ + + +DYMDVS + Sbjct: 551 VTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGME VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGTGMESVVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G V +++IV+K E E +D Y++ KY R+NQ+TC NQ V G+ VE Sbjct: 671 KRSGEVILATSNKIVVKPFESENVKD---LDEYHIVKYERTNQDTCFNQSVLVKEGQKVE 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 RG+++ADGP+T GELALG N+ + +PWNG+N+ED+IL+S+R+V+ED +T+IHI+E + Sbjct: 728 RGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++T DIPNV E L+KLDE+GI+ IG V GDILVGKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQLKQAK 957 +LL +IFGEKA DVK++SL+VP+G GTVIDVQ T++ V EI ++ + + + Sbjct: 848 FRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNLSPGVEEILKVYVAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVE 985 K + G + +L + Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMP 935 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 166/393 (42%), Positives = 222/393 (56%), Gaps = 62/393 (15%) Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + + + +E I+ G + + +LV + D P R L ++ K + Sbjct: 805 NVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPEFRLLTSIFGEKAKDVKN 864 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGD--DLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 L + + ++IT+ D +L+PGV +I+KVY+A KR+++ GDKMAGR Sbjct: 865 NSLKVPHGTEGTVID------VQRITKEDVGNLSPGVEEILKVYVAKKRKLKEGDKMAGR 918 Query: 1070 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN 1129 HGNKGV++KI P+EDMPY +GTP+DI LNPLGVPSRM IG + Sbjct: 919 HGNKGVVAKILPVEDMPYLADGTPLDICLNPLGVPSRM---------------NIGQLME 963 Query: 1130 AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG 1189 + L + PVF+ Sbjct: 964 SQLGLAGKYL---------------------------------------SESYNVPVFES 984 Query: 1190 AKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG 1249 A +I+E LK + + LYDG TGE FE V VG +YMLKL+HLVDDKMHARSTG Sbjct: 985 ATNEQIQEKLKKAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHLVDDKMHARSTG 1044 Query: 1250 SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV 1309 YSLV+QQPLGGKAQFGGQR GEMEVWALEAYGAA+TLQE+LTVKSDD++GR K+Y+NIV Sbjct: 1045 PYSLVSQQPLGGKAQFGGQRLGEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIYENIV 1104 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G G+PESFNVL++E+R LG+++ + D+ Sbjct: 1105 KGVPTNVSGIPESFNVLMQELRGLGLDLSIYDD 1137 >UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Tax=Leptospira RepID=RPOB_LEPBP Length = 1228 Score = 978 bits (2528), Expect = 0.0, Method: Composition-based stats. Identities = 439/1035 (42%), Positives = 609/1035 (58%), Gaps = 154/1035 (14%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG-----QYGLEAAFRSVFPIQSYSG 64 R R +FGK + +P L+ +Q SF F++ + + GLEA FR FPI+S + Sbjct: 8 RNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESFPIESPNN 67 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + ++Y Y LGEP D QEC+ +++ PL+ +RL+I + +I+EQ VYM Sbjct: 68 DMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKD-------TGEIREQVVYM 120 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G++P+MTD+GTF+ING ERV+VSQLHRSPG+FF D+ + ++AR+IPYRGSWL Sbjct: 121 GDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQV------RDTFSARVIPYRGSWL 174 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +FE D K L +IDR++K PAT++++A+ T E++L LF+ +I Sbjct: 175 EFEMDNKGILVAKIDRKKKFPATLLVKAMGMGTNEEVLRLFYGSSKMKIAG---ANPKDL 231 Query: 244 ERLRGETASFDIE--ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 +RL G DI G+V ++ G +I +I L + VK Sbjct: 232 KRLIGRRTIADIINMETGEVMLDAGSKINEDNISILREMKVK------------------ 273 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 ++ + P + L D ND Sbjct: 274 ------------------------------EVDVIEFPKGKDNPVLINCLEKDGVNDYED 303 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-----G 416 A+ + + +MRPGEP T E AE+ + LFFS +DL VGR K N + Sbjct: 304 AVKKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFSKAD 363 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGE--VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 +L K DII+ ++ L+ + + DDIDHLGNRRIRSVGE+ NQ ++G RVER Sbjct: 364 DRVLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRVERV 423 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +KER+++ + + PQ +I+ KPI+A + EFFGSSQLSQFMDQ NPL+E+THKRR++ALG Sbjct: 424 IKERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLNALG 483 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI S+S +A+ N+YGF+ETPYR V Sbjct: 484 PGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPYRLV 543 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 +G V ++ YL+A +E + +AQ+NS +DE+G F L++ R +G+ S ++ YMD Sbjct: 544 KNGKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQYMD 603 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 ++ QVVSV +LIPFLEHDDANRALMG+NMQRQAVP L + P VGTGME A D+GV Sbjct: 604 LAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYDAGV 663 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP----- 769 VAK+ GVV VDA+ + IK ++ + I Y L K+ ++NQ TC NQ P Sbjct: 664 CIVAKKDGVVSKVDATGVWIKEDQSKE------IVHYPLIKFKKTNQGTCFNQKPNVSML 717 Query: 770 ----------------------------------------CVSLGEPV-----ERGDVL- 783 V G+ V G ++ Sbjct: 718 HTTTGGKVSKVSKERVEVTTPNGEKETHELLLSDEVQFHAVVKEGQEVGIGAPVAGQIIK 777 Query: 784 -----------------ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 A+GPSTD G LALG+N+ VAFMPW GYNFED+IL+SER++++D Sbjct: 778 GEKYGDFGQILQKGTVLANGPSTDAGYLALGRNVLVAFMPWEGYNFEDAILISERIIKDD 837 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 F++IHI+E +R+TKLG E+IT DIPN+ + A LDESG++ +GAEV GDILVG Sbjct: 838 VFSSIHIEEFEIQARETKLGQEQITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGM 897 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRA 945 VTPKGET LTPE KLL +IFGEKA +V+DSSLR+PNG GTVID++ ++R+ G E Sbjct: 898 VTPKGETDLTPEYKLLHSIFGEKAKEVRDSSLRMPNGFEGTVIDIKRYSRETGDELAAGV 957 Query: 946 LEIEEMQLKQAKKDL 960 E+ ++ + + +K L Sbjct: 958 EEMVKVYVARKRKLL 972 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 172/425 (40%), Positives = 238/425 (56%), Gaps = 68/425 (16%) Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIR 976 +I VF+ +E+ + ++ +Q +D+ +E ++ G + Sbjct: 832 RIIKDDVFSSIHIEEFEIQARETKLGQEQITRDIPNLSDKAFRDLDESGVIRVGAEVKPG 891 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 +LV + D P + L ++ K+ + L ++ KR Sbjct: 892 DILVGMVTPKGETDLTPEYKLLHSIFGEKAKEVRDSSLRMPNGFEG----TVIDIKRYSR 947 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 GD+LA GV ++VKVY+A KR++ GDKMAGRHGNKGV++++ EDMPY E+G+PVDI Sbjct: 948 ETGDELAAGVEEMVKVYVARKRKLLVGDKMAGRHGNKGVVARVMAQEDMPYMEDGSPVDI 1007 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 VLNPLGVPSRMN +G L + Sbjct: 1008 VLNPLGVPSRMN---------------LGQIFETQLGFAAK------------------- 1033 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 + G+ TPVFDGA E ++ + K LP + + +LYDGR Sbjct: 1034 --------------------KLGINFETPVFDGASEGDVNDFCKKAGLPENSKFQLYDGR 1073 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TGE+F V GY+YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQR GEMEVW Sbjct: 1074 TGEKFINQVFCGYIYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVW 1133 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 ALEAYGA++TLQE+LT+KSDD+ GR ++Y+ IV G H ++PG+PESFNVL++E+R L ++ Sbjct: 1134 ALEAYGASHTLQELLTIKSDDMLGRARIYEAIVKGIHSIKPGIPESFNVLVQELRGLALD 1193 Query: 1337 IELED 1341 I ++D Sbjct: 1194 IIIKD 1198 >UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB9_THET1 Length = 1203 Score = 947 bits (2447), Expect = 0.0, Method: Composition-based stats. Identities = 434/1049 (41%), Positives = 599/1049 (57%), Gaps = 165/1049 (15%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN- 65 K RK + + P +++P L+ IQLDSF F E+ GL+ F + P+ ++G Sbjct: 18 ASKVQRKSYARIPDTIEMPNLIQIQLDSFNWFKEE------GLQELFDEINPVVDFTGRL 71 Query: 66 SELQYV----SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 EL++ GEP + +EC+ R TYSAPL+VK L++ E +IKEQE Sbjct: 72 MELRFDKPDSGQFFGEPRYTEKECRERDFTYSAPLKVKATLLVKE-------TGEIKEQE 124 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 +++G+ PLMT+ GTFVING ERV+VSQL RSPGV+F + +SGK L+ A++IP RG Sbjct: 125 IFLGDFPLMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFDE--ASGKTLWTAKLIPNRG 182 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 +WL+FE KD L+V++DR+RK+P T++LRA+ ++++ + ++ L Sbjct: 183 AWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMGPTTPGTDEWLWAL 242 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 + + +G+ + + A R K+ + + + ++ D Sbjct: 243 YGK----------VSRDGRY-----QNLAATIERDPTKNSQEALV----ELYRRLRPGDP 283 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + L DP Sbjct: 284 PNPENARTLL-------------------------------------RQLLFDP-RRYDL 305 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 A V Y++ R E A S + +D R+ E ++ Sbjct: 306 ARVGRYKLTRKWEQLREVVARS-------NGPTFDFEIDSRV---------YGERLRTIT 349 Query: 422 KDDIIDVMKKLIDIRN----GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 D+I+++ LI + N + E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +KE Sbjct: 350 GRDLINIVGNLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIKE 409 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+S+ D ++ P ++IN +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPGG Sbjct: 410 RMSIQDAESATPNNLINIRPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPGG 469 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L+R+RAG +VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV Sbjct: 470 LSRDRAGLDVRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVKS 529 Query: 598 V-----------------------------------------------------VTDEIH 604 V V +E+ Sbjct: 530 VPGDSIDAMVGHITREPIMDSNGQEVVPVGTEITREVAEKIVALGLDEIKVKPRVLNEVE 589 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS-------KGESSLFSRDQVDYMDVST 657 YLSA E + +AQANS LDE G+F+ED V R+ E + D+VDY+D S Sbjct: 590 YLSADREDLFTVAQANSPLDERGYFLEDRVEARASIRLRRGGTEFMIVPVDEVDYVDASP 649 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +QVVSV +SLIPFLEHDDANRALMGANMQRQAVP L D P+VGTG+E VA DSG + Sbjct: 650 KQVVSVASSLIPFLEHDDANRALMGANMQRQAVPLLVPDSPVVGTGVEAQVARDSGQVVI 709 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 AK G+V+ V A RIV++ ++ + Y L K+ R+NQ+T +NQ P V+ G+ + Sbjct: 710 AKADGIVRSVTAERIVVEEDD-------GNLRTYELEKFVRTNQDTLLNQRPIVNKGDRI 762 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 G ++AD ST GE+ALGQN+ VAFMPW G NFED++L+SER+V++D +T+IHI++ Sbjct: 763 YAGQIIADSASTSNGEIALGQNVLVAFMPWEGGNFEDAVLISERLVRDDVYTSIHIEKYE 822 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 +RDTKLGPEEIT DIPNVGE AL+ LDE GIVY+GAEV DILVGKVTPKGET++T Sbjct: 823 VEARDTKLGPEEITRDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMTA 882 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQA 956 EE+LLRAIF EKA DV+D+SLRVPNGV G VIDV+VFTR + + ++ + + Q Sbjct: 883 EERLLRAIFSEKARDVRDTSLRVPNGVHGQVIDVKVFTRVENDDLPAGVNQMVRVMIAQK 942 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVE 985 +K + G I +L + Sbjct: 943 RKISEGDKVAGRHGNKGVISRILPIEDMP 971 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 390/1173 (33%), Positives = 568/1173 (48%), Gaps = 207/1173 (17%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEK-------DDVKLIEVPVEYIAGKVVA 298 L E +F I +V V + R + + + KLI ++ + Sbjct: 132 LMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFDEASGKTLWTAKLIPNRGAWLEFETSN 191 Query: 299 KDY----IDESTGE---LICAANMELSLDLLAKLSQSGHKR------IETLFTNDLDHGP 345 KD +D ++ A + +++ G + L+ G Sbjct: 192 KDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMGPTTPGTDEWLWALYGKVSRDGR 251 Query: 346 Y--ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 Y ++ T+ DPT + ALVE+YR +RPG+PP E A +L L F RYDL+ VGR Sbjct: 252 YQNLAATIERDPTKNSQEALVELYRRLRPGDPPNPENARTLLRQLLFDPRRYDLARVGRY 311 Query: 404 KFNRSL--LREEI------------------EGSGILSKDDIIDVMKKLIDIRN----GK 439 K R LRE + E ++ D+I+++ LI + N + Sbjct: 312 KLTRKWEQLREVVARSNGPTFDFEIDSRVYGERLRTITGRDLINIVGNLIRLNNLPPGSE 371 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPIS 499 E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +KER+S+ D ++ P ++IN +P+ Sbjct: 372 EEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIKERMSIQDAESATPNNLINIRPVV 431 Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPGGL+R+RAG +VRDVHP+HYGR+C Sbjct: 432 AAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPGGLSRDRAGLDVRDVHPSHYGRIC 491 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL-------SAIEEG 612 PIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV V D I + ++ Sbjct: 492 PIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVKSVPGDSIDAMVGHITREPIMDSN 551 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR--DQVDYMDVSTQQVVSVGASLIP- 669 + + + E V + + E + R ++V+Y+ + + +V + P Sbjct: 552 GQEVVPVGTEITRE---VAEKIVALGLDEIKVKPRVLNEVEYLSADREDLFTVAQANSPL 608 Query: 670 -----FLEHDDANRALMGANMQR-----QAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 FLE RA ++R VP + V ++ V+V S + + Sbjct: 609 DERGYFLEDRVEARA--SIRLRRGGTEFMIVPV--DEVDYVDASPKQVVSVASSLIPFLE 664 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 DA+R ++ N D P V G VE Sbjct: 665 HD------DANRALMGANMQRQAVPLLVPDS------------------PVVGTG--VEA 698 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 V D GQ +++++ + ++ + + Sbjct: 699 -QVARDS----------GQ-----------------VVIAKA---DGIVRSVTAERIVVE 727 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 D L E+ + + L++ IV G + G I+ + ++ + Sbjct: 728 EDDGNLRTYELEKFVRTNQDTL---LNQRPIVNKGDRIYAGQIIADSAS-TSNGEIALGQ 783 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 +L A + + +D+ L +S ++ V+T +EK + ++ ++ +D Sbjct: 784 NVLVAFMPWEGGNFEDAVL-----ISERLVRDDVYTSIHIEKYEVEARDTKLGPEEITRD 838 Query: 960 LS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN 1009 + +E I+ G + +LV + + +R L +++ + Sbjct: 839 IPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMTAEERLLRAIFSEKARDV 898 Query: 1010 QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 + L + K+ + DDL GV ++V+V +A KR+I GDK+AGR Sbjct: 899 RDTSLRVPNGVHGQVIDVKVFTRVE----NDDLPAGVNQMVRVMIAQKRKISEGDKVAGR 954 Query: 1070 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN 1129 HGNKGVIS+I PIEDMP+ +G PVD++LNP+GVPSRMN +G + Sbjct: 955 HGNKGVISRILPIEDMPFLPDGRPVDVILNPIGVPSRMN---------------LGQILE 999 Query: 1130 AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG 1189 L G +A PVFDG Sbjct: 1000 CHLGWAASTL---------------------------------------GFKVACPVFDG 1020 Query: 1190 AKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG 1249 A E IKE L+ LP G+I LYDGRTGE+F++PV VG MY++KL HLV+DK+HARSTG Sbjct: 1021 ASEEMIKEELRRAGLPEDGKIELYDGRTGEKFDQPVAVGVMYIMKLAHLVEDKIHARSTG 1080 Query: 1250 SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV 1309 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD GR + Y+ IV Sbjct: 1081 PYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDTVGRVRTYEAIV 1140 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G G+PESF VL+KE++SLG+++E+ +E Sbjct: 1141 KGEPISGAGVPESFKVLMKELQSLGLSVEVLNE 1173 >UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Carsonella ruddii RepID=RPOB_CARRP Length = 1267 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 409/1343 (30%), Positives = 700/1343 (52%), Gaps = 92/1343 (6%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + +++KK K ++PYLL Q+ S+ F+ + ++ + FP+ Sbjct: 10 FCFSKKKFFHK--------CNLPYLLHNQIGSYNSFLSSKYNSLFSIKKVLKQYFPLICN 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 + N ++ L EP + +IR + + L + + + + + +++ Sbjct: 62 NKNIFIKLKKIELLEPCNTEKYTKIRNLHLFSTLYMYISIYVINKNLNV-------YKKI 114 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 ++G IP MT G F+ING +R+++SQ +S G++F ++K K IIP +GS Sbjct: 115 FLGNIPSMTKKGNFIINGIDRILISQFTKSYGIYFYTEKKKK--------KCIIIPLKGS 166 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+F +N + D++ + L L Y + + FF K+ +I K ++ + Sbjct: 167 WLEFII--TNNFLIVFDKKINFEINVFLICLGYNKKYFFNFFFFKIKIKIIRGKKRIFFL 224 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 + + K K I + ++ I GK+ K+Y Sbjct: 225 LNK----------------------------KKYFYKIYNKYICISIKKILGKLFGKNYF 256 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + L + ++ + + +F + + Y+ + Sbjct: 257 LKKNTFLKFNI---IDINKVNLILNYPIYFFFIIFLKKIINLNYLIYIYKNFKLKINKEL 313 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L + + F NLF+ + +Y S +G + + L ++ I + Sbjct: 314 LQYKKGYI-----------INFFRNLFY-KKKYFYSLIGAKRIFKRLFLKKNNKLTIYLE 361 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + +I+N D+ D+L N+ I + G++ +F +V + + +++ Sbjct: 362 IIKKILKFIKFNIQN-----DNFDNLENKLILNCGKLLSIKFDFLFKKVIKFINYKMNNF 416 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 + ++N+ I+ +K++F +++LSQF+DQNNPL+EI+H R+IS + G+ +E Sbjct: 417 KKYKDLDF-IVNSDIITIGLKDYFCNNELSQFLDQNNPLAEISHNRKISLISGIGIEKEN 475 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 GF++RD+H +HY +VCPI+TPEG NIGLINSL+ ++ N+Y F+ T Y+ G + Sbjct: 476 CGFDIRDIHYSHYCKVCPIDTPEGHNIGLINSLAYLSKVNKYNFISTIYKISILGKILG- 534 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEG--HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 I +L + + I NS ++ F R +D +++ Q+ Sbjct: 535 ITFLDNKFDKHKFIVNFNSTIETIYGEIFRSPYFEARKTNYYYYKKFLNIDLIEICGDQI 594 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 +SVGASLIPFL H+DANR LMG+NMQRQAVP + ++ P+VGTG E + ++S ++ Sbjct: 595 ISVGASLIPFLSHNDANRCLMGSNMQRQAVPLIDSENPIVGTGNELEIGLNSNYNILSDL 654 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G V Y D +I+IK N I Y L KYTR+NQNT +NQ V G+ V+ G Sbjct: 655 NGYVLYSDNYKIIIKNNN--------FIKTYFLEKYTRTNQNTILNQYTKVLKGDFVKVG 706 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +++AD ST GE++LG+N+RVAFM W GYNFEDSIL+S ++ ++ F +IHI E V Sbjct: 707 NIIADSNSTKNGEISLGKNLRVAFMSWYGYNFEDSILLSSSILNKNNFNSIHIYEFITVL 766 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + + G E ++ + E +K+ ++GI+ IG V D++VGK+ PK + + +PEEK Sbjct: 767 KYNENGFEIVSNECFGSNEKIKNKV-KNGIIKIGEFVFSKDVIVGKMIPKKKRKFSPEEK 825 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 L + +F E + + L VP + GT+I V F + K+K ++ QL K++ Sbjct: 826 LFKIVFSESNFNYYEQPLTVPKNIKGTIIAVNDF-KIFYFKNKIFKLLKFEQLNYTCKNI 884 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE-QLAEQYD 1019 + ++I+ +L + +K + + + ++ +L + Sbjct: 885 NNFFYETFNYYLTKIKKLLFNNKITIKKKRINSYNININNIFKIKCFNKKINFKLNIFKN 944 Query: 1020 ELKHEFEKK---LEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076 + +E KK K+ + DD +++I+K+ +AVK++I GDKM+GRHGNKGV+ Sbjct: 945 IISNELLKKKNIFVYKKINFIKHDDFENSIIRIIKIKIAVKKQIAIGDKMSGRHGNKGVV 1004 Query: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ 1136 S I E+MPYD+ G +D++LNPLGVPSRMN+GQ+LE L + + +K Sbjct: 1005 SNIIDYENMPYDKFGNKIDLILNPLGVPSRMNVGQLLEVFLA-GSLNLIKSFFLKIKNLN 1063 Query: 1137 EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIK 1196 +++ + + + ++L+ F++ V+++ +N++ + + F ++ Sbjct: 1064 KISYFKMKLFIKIIFKCIYDKNINLNIFNNSLVLKIFKNIKNQLNVCVHNFYNFNVNKVN 1123 Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 ++K + + ++ L+DG TG+++ + V VGY+Y +KLNHLV DK+++RS G YS+VTQ Sbjct: 1124 NIIKTIGINKNCELLLFDGITGKRYLQLVNVGYIYFMKLNHLVIDKIYSRSIGPYSIVTQ 1183 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME 1316 QPLGGK+ GGQR GEMEVWALEAYGAA+ L+EMLT+KSDD+ GR ++YKNI+ G + Sbjct: 1184 QPLGGKSNLGGQRLGEMEVWALEAYGAAFLLKEMLTIKSDDILGRIELYKNIIKGINDAN 1243 Query: 1317 PGMPESFNVLLKEIRSLGINIEL 1339 G+PESF VL+KEI+SL +I++ Sbjct: 1244 SGIPESFQVLMKEIQSLCFDIKI 1266 >UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Tax=Mollicutes RepID=RPOB_AYWBP Length = 1273 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 373/1042 (35%), Positives = 567/1042 (54%), Gaps = 112/1042 (10%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F+ ++G++ + PI+SY+G+ + Sbjct: 10 KKAQRRNYSKTIYDVDLPNLIEIQNQSFDWFL------KHGIKELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + Y L P + ++E +I+ ++Y A L VK L + K+ + + E+ Sbjct: 64 IHFDDYFLTPPKYSIEETKIKDISYVAQLFVKTTL-------ENVLTGETKQSNILLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+INGTERV+VSQ+ RS V+F + + +Y+ ++IP RG+W+++E Sbjct: 117 PLMTSTGTFIINGTERVVVSQIVRSASVYFAGNFD--IKLNRTIYSGQVIPSRGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ----------ILDLFFEKVIFEIRDNKL 237 K+ L+ ++DR +K+P + + AL + +++ ILD F+K DN L Sbjct: 175 EGSKEILYAKLDRSKKIPLSNFIYALGFDSKEAIENVFGKSAILDSVFDKETDMDSDNAL 234 Query: 238 QMELVPERLRGETASFDIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 +EL + +GE D + +++ +K + + K L Y+A Sbjct: 235 -VELYSKIRQGEKVPVDTARDFIRTRLFDQKKYDLAKVGRYKFNKKLDVLTRAENTYLAC 293 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 D+++ E++ A + L+ + +A L Q+ H ++ +F + E + Sbjct: 294 -----DFVNPENQEIMIAQDELLTKEKIAILKQNRHFLLQEIFDAKHNLENETDEEILAY 348 Query: 355 PTNDRLSALV-----------------------EIYRMMRPGEPPTREAAESLF------ 385 + + L +I +R E F Sbjct: 349 KKYPQKNELFTKTNIINSRTGEVLVAKDTLVNDDIINHLRHNIHTLDEKVSKFFLGTKDI 408 Query: 386 -------ENLFFSEDRYDLSAVGRMKFNRS---LLREEIEGSGILSKDDIIDVMKKLIDI 435 + +F S K + ++ E ++ D+I + +++ Sbjct: 409 YQKEADRQGVFNEILEVYTSKDESGKLYNKVKLIGNDQRETKKHITLSDVIASINYYLNL 468 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM-PQDMIN 494 G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S + P D++N Sbjct: 469 YENVGTVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKNIKDMISTSKFGEVNGPGDLVN 528 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + + +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDVH +H Sbjct: 529 FTFLMSVIKTFFTNSRLSQFMDQINPLAELTQKRRVSALGIGGINRDRAGIEVRDVHNSH 588 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT----DGVVTDEIHYLSAIE 610 YGR+CPIETPEGP+IGLI SLS YA+ N+YGF++TP+ KV ++ +I YL+A + Sbjct: 589 YGRLCPIETPEGPSIGLITSLSTYAKVNKYGFIQTPFFKVLQQDGKTTLSRDIDYLTADQ 648 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 E +IA A LD F + + RS GE+ +F R+Q+ Y DVS +Q+VSV S IPF Sbjct: 649 EKEEIIASAGFVLDANNSFQDKKIIARSNGETGIFERNQITYADVSPKQIVSVATSSIPF 708 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 LEH+DA+RALMGANMQRQAVP L + P+VGTG+E A DSG +A+ G V YVDA Sbjct: 709 LEHNDASRALMGANMQRQAVPLLIPESPIVGTGVEYRAAKDSGCLIIARESGFVTYVDAQ 768 Query: 731 RIVI--KVNEDEMYPGEAGIDI-----------------------YNLTKYTRSNQNTCI 765 +I+I K N+ G+ D Y L + +SNQ+T + Sbjct: 769 KIIITKKPNQTVSLNGKTLYDTTQEFTYTQAKVLYENNHKEYQAEYTLINFAKSNQDTLV 828 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 Q P V LGE + GD+L GPST GELALG+N+ VAFM W GYN+ED+I++SE +V+ Sbjct: 829 LQKPIVVLGEHINEGDILVSGPSTSQGELALGRNVTVAFMTWEGYNYEDAIIMSEELVKH 888 Query: 826 DRFTTIHIQELACVSRDTKL--GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 D +T+IHI + +R+ K G EEIT ++PNVG A+ LDE GI+ G+EV GDIL Sbjct: 889 DVYTSIHIDKYEVQTRELKKGSGQEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDIL 948 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD------ 937 VGK+TP+G + +P EKL++ + GEKA + KDSSLRVP G G V V F+R Sbjct: 949 VGKITPQGNIEPSPSEKLIQIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSRKNGDVLP 1008 Query: 938 -GVEKDKRALEIEEMQLKQAKK 958 GV ++ R ++ ++ + K Sbjct: 1009 AGVNENIRVFIAKKRKINEGDK 1030 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 172/487 (35%), Positives = 257/487 (52%), Gaps = 86/487 (17%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV +G + GDILV G + E L R + V + N ++ Sbjct: 833 IVVLGEHINEGDILVS-----GPSTSQGELALGRNV------TVAFMTWEGYNYEDAIIM 881 Query: 930 DVQVFTRD---GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI----------- 975 ++ D + DK ++ E++ +++++ E+ + A + Sbjct: 882 SEELVKHDVYTSIHIDKYEVQTRELKKGSGQEEITREVPNVGADAIKNLDERGIIIPGSE 941 Query: 976 ---RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAK 1032 +LV ++ P ++ +++ + ++ ++ + L + E ++ Sbjct: 942 VKEGDILVGKITPQGNIEPSPSEKLIQIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSR 1001 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 + GD L GV + ++V++A KR+I GDKMAGRHGNKGVIS+I P ED+PY +GT Sbjct: 1002 K----NGDVLPAGVNENIRVFIAKKRKINEGDKMAGRHGNKGVISRILPKEDLPYMADGT 1057 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLG 1152 P+DI+LNPLGVPSRMN IG + L + Sbjct: 1058 PIDIMLNPLGVPSRMN---------------IGQILEIHLGMAAK--------------- 1087 Query: 1153 ADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 + G+ +ATPVFDG + ++KE++K +L G++ L Sbjct: 1088 ------------------------KLGIKVATPVFDGVNDYDLKEIMKEANLEPDGKMVL 1123 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 YDGRTGE ++ ++VG MYM+KL+H+VDDK+HAR+ G Y+LVTQQP+GGK Q GGQRFGE Sbjct: 1124 YDGRTGEPYDSRISVGVMYMVKLSHMVDDKLHARNVGPYTLVTQQPMGGKVQNGGQRFGE 1183 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 MEVWAL AYGAA+TLQE+LTVKSDD+ GR K Y IV G +P +PESF V +KE++S Sbjct: 1184 MEVWALYAYGAAHTLQEILTVKSDDIVGRNKTYSAIVQGTQLPKPSIPESFRVFIKELQS 1243 Query: 1333 LGINIEL 1339 LG+ +EL Sbjct: 1244 LGLYVEL 1250 >UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Phytoplasma RepID=RPOB_PHYAS Length = 1240 Score = 885 bits (2287), Expect = 0.0, Method: Composition-based stats. Identities = 368/1037 (35%), Positives = 571/1037 (55%), Gaps = 87/1037 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F++ G+E + PI+SY+G+ + Sbjct: 10 KKVERRNYSKIIYDVDLPNLIEIQNKSFNWFLKD------GIEELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + P + V+E + + +Y L VK L + K+ V + E+ Sbjct: 64 IYFGECYSTGPKYSVEESKTKDASYVIQLFVKATL-------ENTLTGETKKSSVLLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PL+TD GTF+ING ERV VSQ+ RS K LY+ ++IP RG+W+++E Sbjct: 117 PLITDTGTFIINGKERVAVSQIVRS--SSVYYSSTFDVKLNKNLYSGQVIPARGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF---------EIRDNKLQ 238 K+ L+V++DR +K+P + + AL + +I++ F K ++ Sbjct: 175 EGSKEILYVKLDRSKKIPLSNFIYALGFNNREIIEKVFGKSPLLNSSFVKEEDMDTGNAL 234 Query: 239 MELVPERLRGETASFDIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +EL + +GE D + +++ +K +T + K L Y+ Sbjct: 235 IELYSKIRQGEKVPVDTARDFIRKRLFDQKKYDLTTVGRYKFNKKLDVLARAEKTYLV-- 292 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE---TLR 352 D+++ T E+I + L+ D + L ++ H ++ LF + E T + Sbjct: 293 ---HDFVNLETKEIILPKHTFLTKDKIEILRKNRHFLLQELFDAQHNLENETDEEILTYK 349 Query: 353 VDPTNDRLSALVEIYRMMRPGE---PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 DP + L I R GE P + + + L S D + ++ + Sbjct: 350 KDPQSRELYIKTNILN-FRTGEIIFPKDTLVTDEVIKRLRKSIQLLDGKVIEFFLRSKDV 408 Query: 410 LREEIEGSGI----------------------------------LSKDDIIDVMKKLIDI 435 ++++E +G+ ++ DII + +++ Sbjct: 409 YQKDLERTGVFNEILEVYLSKDEHDNLQHKVQIVGNNQKETKKHITLSDIIASISYYLNL 468 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S+ + P +++N Sbjct: 469 YEGIGNVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKHIKDMISVSKFSEVGPGELVNF 528 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 ++ +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDVH +HY Sbjct: 529 GFLNGVIKTFFANSRLSQFMDQINPLAELTQKRRVSALGVGGINRDRAGVEVRDVHNSHY 588 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT----DGVVTDEIHYLSAIEE 611 GR+CPIETPEGP+IGLI SL++YA+ ++YGF++TP+ KV V+++I YL+A +E Sbjct: 589 GRLCPIETPEGPSIGLIASLAIYAKVDDYGFIQTPFFKVFVQNGASYVSNQIEYLTADQE 648 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 +IA + L+ + F +D V R GE ++ ++QV Y D+S +Q+VS+ + IPFL Sbjct: 649 KEEIIASSGYELNSDATFQKDKVIARKNGEIGIYPKEQVTYADISPKQIVSIATASIPFL 708 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EH+D++RALMG+NMQRQAVP L + P+VGTG+E A DSG +A + G+V YVDA + Sbjct: 709 EHNDSSRALMGSNMQRQAVPLLVTESPIVGTGIEYRAAKDSGSLIIASQPGIVTYVDAKK 768 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 IV E Y LT + +SNQ+T I Q P VSLG+ +++GD+L DGPST+ Sbjct: 769 IV-------TSDQEGNKKEYQLTTFEKSNQDTLILQKPIVSLGDNIQKGDILVDGPSTNQ 821 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL--GPEE 849 GELALG+N+ VAFM W GYN+ED+I++SE +V+ D +T++HI + + +R+ K G EE Sbjct: 822 GELALGRNILVAFMTWEGYNYEDAIIISEELVKNDVYTSVHINKYSVQTRELKKGSGKEE 881 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 IT ++PNVG A+ LDE GI+ G+EV GDILVGK+TP+G TP+EKL++ + GEK Sbjct: 882 ITREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNVDPTPQEKLIQIVIGEK 941 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE-KDKRALEIEEMQLKQAKKDLSEELQILE 968 A + KDSSLRVP G G V VQ F+R + E + + + +K + Sbjct: 942 AREYKDSSLRVPYGEGGIVQSVQYFSRKNGDILPPGVNENIRVFIAKKRKISEGDKMAGR 1001 Query: 969 AGLFSRIRAVLVAGGVE 985 G I +L + Sbjct: 1002 HGNKGVISRILPKEDLP 1018 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 169/488 (34%), Positives = 260/488 (53%), Gaps = 88/488 (18%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV +G + GDILV G T +GE L +L A + + +D + Sbjct: 800 IVSLGDNIQKGDILVDGPSTNQGELAL--GRNILVAFMTWEGYNYED----------AII 847 Query: 929 IDVQVFTRD---GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI---------- 975 I ++ D V +K +++ E++ K++++ E+ + A + Sbjct: 848 ISEELVKNDVYTSVHINKYSVQTRELKKGSGKEEITREVPNVGADAIKNLDERGIIIPGS 907 Query: 976 ----RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 +LV +D P+++ +++ + ++ ++ + L Y E + + Sbjct: 908 EVKEGDILVGKITPQGNVDPTPQEKLIQIVIGEKAREYKDSSLRVPYGEGGIVQSVQYFS 967 Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 ++ GD L PGV + ++V++A KR+I GDKMAGRHGNKGVIS+I P ED+P+ E+G Sbjct: 968 RK----NGDILPPGVNENIRVFIAKKRKISEGDKMAGRHGNKGVISRILPKEDLPFMEDG 1023 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 T +D++LNPLGVPSRMN IG + L + ++ Sbjct: 1024 TTIDVMLNPLGVPSRMN---------------IGQILEIHLGMSAKNLNIK--------- 1059 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 +ATPVFDG + ++KE+ + +L G+ Sbjct: 1060 ------------------------------VATPVFDGVNDQDLKEISQEANLELDGKKV 1089 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 LYDGRTGE +E ++VG MYM+KL+H+VDDK+HAR+ G Y+LVTQQP+ GK + GGQR+G Sbjct: 1090 LYDGRTGEPYENRISVGVMYMIKLSHMVDDKLHARNVGPYTLVTQQPMRGKIREGGQRYG 1149 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EME WA+ A+GAAYTLQE LT+KSDD+ GR + Y IV G +P +PESF VL+KE++ Sbjct: 1150 EMENWAVHAHGAAYTLQEFLTIKSDDIIGRNQTYSAIVQGKQLPKPNIPESFRVLIKELQ 1209 Query: 1332 SLGINIEL 1339 +LG+ +EL Sbjct: 1210 ALGLYVEL 1217 >UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacteria RepID=A7BQQ8_9GAMM Length = 1118 Score = 884 bits (2284), Expect = 0.0, Method: Composition-based stats. Identities = 482/726 (66%), Positives = 578/726 (79%), Gaps = 28/726 (3%) Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 +R+D T L A +EIYRMMRPGEPPT EAAESLF NLFFSE+RYDLSAVGRMKFNR + Sbjct: 1 MRIDSTTTTLEAQIEIYRMMRPGEPPTPEAAESLFNNLFFSEERYDLSAVGRMKFNRRIG 60 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 R+EI G GIL+ DDI+DV++ LI+I NG G VDDIDHLGNRRIRSVGEM ENQFR+GLVR Sbjct: 61 RDEITGPGILTVDDILDVLRTLINIPNGIGGVDDIDHLGNRRIRSVGEMTENQFRIGLVR 120 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 VERAVKERLS+ +++ ++PQ++INAKP+SA+++EFFGSSQLSQFMDQNNPLSE+THKRRI Sbjct: 121 VERAVKERLSVAEIENVVPQELINAKPVSASIREFFGSSQLSQFMDQNNPLSEVTHKRRI 180 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+VYA+TN+YGFLETP Sbjct: 181 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETP 240 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 R+V DG VTD++ YLSAIEEG +VIAQAN+NLDE G+F +D+V R + E ++ S+D+V Sbjct: 241 CRRVEDGRVTDKVEYLSAIEEGGFVIAQANANLDENGYFKDDMVAARHENEFTVISKDKV 300 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +YMDVS +Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRA KPLVGTGMER VA+ Sbjct: 301 NYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAQKPLVGTGMERIVAI 360 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG--------------EAGIDIYNLTKY 756 DSGVT VA+RGG++ VDA+RIV+++N+DE+ +G+DIYNLTKY Sbjct: 361 DSGVTVVAERGGIIDSVDAARIVVRINDDEVLKEGEDNSITPKFGTLLSSGVDIYNLTKY 420 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQNTCINQ P V + ++RGDVLADGPSTDLGELALGQN+ VAFMPWNGYNFEDSI Sbjct: 421 VRSNQNTCINQKPLVKPDDLIKRGDVLADGPSTDLGELALGQNLFVAFMPWNGYNFEDSI 480 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 L+SERVV+E+RFT+IHI EL+C++RDTKLG EEITADIPNV E+AL LDE+GI+ IGA+ Sbjct: 481 LISERVVEEERFTSIHIVELSCLARDTKLGAEEITADIPNVSESALKNLDEAGIISIGAQ 540 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLRVP+G GTVIDVQVFTR Sbjct: 541 VMPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTMGTVIDVQVFTR 600 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE--------AEK 988 DGV+K RA IE+ +L + KKDL + L+ILE ++ R+ +LV V E Sbjct: 601 DGVDKGARAGRIEQAELNRVKKDLQDTLRILEHDVYLRVEKLLVGNKVTNSSNGWEGWEG 660 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK------HEFEKKLEAKRRKITQGDDL 1042 + KL + DE+ + + D+++ E + K K + D Sbjct: 661 VKKLLVGNKVTNSSKDEDGIETNTIITSRSDDIETNTIITSEILGEPSDKWFKFSLEDKK 720 Query: 1043 APGVLK 1048 + L+ Sbjct: 721 SQAQLE 726 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 237/372 (63%), Positives = 286/372 (76%), Gaps = 4/372 (1%) Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAK 1032 + +A L + + L LPR + EL + DE+ Q Q+E A+Q + + + E K Sbjct: 744 EKSQAQLESFKPALKALHDLPRTKLFELRVEDEKIQAQIESFAQQLKDQRQRADALYEEK 803 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 R+K+ GD+LAPGVLK+VKVYLA+KR IQPGDKMAGRHGNKGV+S I P+EDMPY ++G Sbjct: 804 RQKLISGDELAPGVLKMVKVYLAIKRTIQPGDKMAGRHGNKGVVSMIVPVEDMPYTKDGR 863 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE----VAKLREFIQRA 1148 PVD+VLNPLGVPSRMNIGQ+LETHLG AAK +G++I LK + + E Sbjct: 864 PVDLVLNPLGVPSRMNIGQVLETHLGWAAKALGEQIEQKLKIINKSKIIAQSIEELRSYL 923 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 + + DL+ ++ E++ LA+NL G+P+AT VFDGA E+EIK +L+L LPT+G Sbjct: 924 TKIYNVSGKPEDLTVLNNAEILELAKNLSDGVPMATQVFDGASESEIKMMLELAGLPTNG 983 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 Q LYDGRTGE F R +TVGYMYMLKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQ Sbjct: 984 QTTLYDGRTGEAFSRQITVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ 1043 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 RFGEMEVWALEAYGA+YTLQEMLTVKSDDVNGRT+MYKNIVDG+H+ME GMPESFNVL+K Sbjct: 1044 RFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTQMYKNIVDGDHRMEAGMPESFNVLVK 1103 Query: 1329 EIRSLGINIELE 1340 EIRSLGI+IELE Sbjct: 1104 EIRSLGIDIELE 1115 >UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Tax=cellular organisms RepID=RPOB_SYNJB Length = 1139 Score = 880 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 359/736 (48%), Positives = 478/736 (64%), Gaps = 14/736 (1%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 K EI+D + + +P L + +F I +V V + R + + + + Sbjct: 98 NKETGEIKDMDVFIGELP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKSELDKNGRRT 155 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 I + + + G + + L L G E ++L H Sbjct: 156 Y-SASLIPNRGAWLKFETDKNGLVWVRIDKTRKLSAAVLLKALGLSDSEI--YDNLRHPE 212 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 + +T+ + AL+E+YR +RPGEPPT + L E+ FF RYDL VGR K Sbjct: 213 FFQKTMEKEGPYTEEEALMELYRKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKL 272 Query: 406 NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 N+ L E +L+ DI+ V+ LI++ G VDDIDHLGNRR+RSVGE+ +NQ R Sbjct: 273 NKKLNLNVAESVRVLTVTDILAVIDYLINLEYDIGHVDDIDHLGNRRVRSVGELLQNQVR 332 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 VGL R+ER ++ER+++ + + L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 333 VGLNRLERIIRERMTVSESENLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELT 392 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 HKRR+SALGPGGL+RERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+ +A+ N+YG Sbjct: 393 HKRRLSALGPGGLSRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNQYG 452 Query: 586 FLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 F+E+PY +V +GVV + + YL+A EE Y +A + +D EG DLV R + E + Sbjct: 453 FIESPYYRVENGVVRKDLGMVYLTADEEDEYRVAPGDVPVDAEGRITADLVPVRYRQEFT 512 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 +V Y+ V+ QV+SV SLIPFLEHDDANRALMGANMQRQAVP L+ D+P VGTG Sbjct: 513 TAHPTEVHYVQVAPVQVISVATSLIPFLEHDDANRALMGANMQRQAVPLLKPDRPYVGTG 572 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 +E A DSG+ V++ GVV YV A IV++ ++ +Y L KY RSNQ+T Sbjct: 573 LEAQAARDSGMVVVSRTNGVVTYVSADEIVVRPDDG------GDPIVYRLQKYQRSNQDT 626 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 C+NQ P V G+ V G VLADGP+T+ GELALGQN+ VA+MPW GYN+ED+IL+SER+V Sbjct: 627 CLNQRPLVYTGDRVVAGQVLADGPATEGGELALGQNVLVAYMPWEGYNYEDAILISERLV 686 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 +D FT++HI++ +R TKLGPEEIT +IPNVGE AL LDE+GIV IGA V GDIL Sbjct: 687 YDDVFTSVHIEKHEIEARQTKLGPEEITREIPNVGEDALRDLDENGIVRIGAWVEAGDIL 746 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKD 942 VGKVTPKGE+ PEE+LLRAIFGEKA DV+D+SLRVPNG G V+DV++FTR+ G E Sbjct: 747 VGKVTPKGESDQPPEERLLRAIFGEKARDVRDNSLRVPNGERGRVVDVRIFTREQGDELP 806 Query: 943 KRALEIEEMQLKQAKK 958 A + + + +K Sbjct: 807 PGANMVVRVYIALKRK 822 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 192/487 (39%), Positives = 272/487 (55%), Gaps = 59/487 (12%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ +VY G V G +L G T GE L + +L A + + +D+ L Sbjct: 628 LNQRPLVYTGDRVVAGQVLADGPATEGGELAL--GQNVLVAYMPWEGYNYEDAIL----- 680 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL----SEELQILEAGLFSRIR--- 976 +S ++ VFT +EK + ++ ++ +++ + L+ L+ RI Sbjct: 681 ISERLVYDDVFTSVHIEKHEIEARQTKLGPEEITREIPNVGEDALRDLDENGIVRIGAWV 740 Query: 977 ---AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 +LV + D+ P +R L ++ + + L E + ++ + Sbjct: 741 EAGDILVGKVTPKGESDQPPEERLLRAIFGEKARDVRDNSLRVPNGERGRVVDVRIFTR- 799 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 QGD+L PG +V+VY+A+KR+IQ GDK+AGRHGNKG+IS+I PIEDMPY +GTP Sbjct: 800 ---EQGDELPPGANMVVRVYIALKRKIQVGDKIAGRHGNKGIISRILPIEDMPYLADGTP 856 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VD+VLNPLGVPSRMN+GQ+ E LG AA+ +G + M Sbjct: 857 VDVVLNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLMPF-------------------- 896 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 D ++ S + E +R A+E K+ + + G+I+++ Sbjct: 897 DEMHGLEASRLTVEAKLR-----------------EAREKTGKDWIFNPEGKYCGKIQVF 939 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTGE F++PVTVG YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQRFGEM Sbjct: 940 DGRTGEPFDQPVTVGRAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEM 999 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEA+GAAY LQE+LTVKSDD+ GR + IV G PG PESF VL++E++SL Sbjct: 1000 EVWALEAFGAAYILQELLTVKSDDMVGRNEALNAIVKGKPIPRPGTPESFKVLVRELQSL 1059 Query: 1334 GINIELE 1340 +++ + Sbjct: 1060 CLDVSVH 1066 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 160/346 (46%), Gaps = 40/346 (11%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV------- 71 P P L+ IQ +SF F+ + G E S PI Y+G EL ++ Sbjct: 9 PVAPTFPDLVEIQRESFLWFL------REGFEEELLSFSPIIDYTGKLELHFLPEYRPGD 62 Query: 72 ---SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 Y++ P +D +E + R TY A +RV RL+ E +IK+ +V++GE+P Sbjct: 63 PSKGYKINRPRYDPEEAKRRDATYQAQIRVPTRLINKE-------TGEIKDMDVFIGELP 115 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 LMTD GTF+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE Sbjct: 116 LMTDRGTFIINGAERVIVNQIVRSPGVYYKSELDK---NGRRTYSASLIPNRGAWLKFET 172 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILD-----LFFEKVIFE---IRDNKLQME 240 D ++VRID+ RKL A ++L+AL + +I D FF+K + + + + ME Sbjct: 173 DKNGLVWVRIDKTRKLSAAVLLKALGLSDSEIYDNLRHPEFFQKTMEKEGPYTEEEALME 232 Query: 241 LVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 L + GE + + + R R R + L + Sbjct: 233 LYRKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAESVRVLTVTDI 292 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 ID LI +D + L + + L N + G Sbjct: 293 LAVID----YLINLEYDIGHVDDIDHLGNRRVRSVGELLQNQVRVG 334 >UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA polymerase beta subunit n=1 Tax=Hydra magnipapillata RepID=UPI00019270C2 Length = 1140 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 447/735 (60%), Positives = 543/735 (73%), Gaps = 4/735 (0%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK-- 283 KV+ E+++ ++ M VP L SF I +V V + R + Sbjct: 118 NKVVKEVKEQEVYMGEVP--LMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSG 175 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + D+ + L + + + L G L LD Sbjct: 176 KLLFSARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQ 235 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 G YIS+TLR D T D +A V IYRMMRPGEPPT +A ++LF+ LF++ D YDLS VGRM Sbjct: 236 GAYISQTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRM 295 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 KFN + R E G +L+ +DI+ V+K L+D+RNG+G+VDDIDHLGNRR+R VGE+AENQ Sbjct: 296 KFNAKMGRSESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQ 355 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 +R GL R+E+AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFM+Q NPL+E Sbjct: 356 YRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMNQTNPLAE 415 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ITHKRR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL++YA+ NE Sbjct: 416 ITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNE 475 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 YGF+ETPYR+V D VT+EI YLSAIEEG YVIAQAN+ LD+EG DLV+ R KGES Sbjct: 476 YGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKEGTLTGDLVSAREKGESI 535 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 L S D+V YMDVS Q+VSV ASL+PFLEHDDANRALMGANM RQAVP LR +KP+VGTG Sbjct: 536 LVSADRVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTG 595 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 +ER AVDSG A RGG+V YVDA+R+VI+VN+ E GE G+DIYNL KY RSNQNT Sbjct: 596 IERVAAVDSGTVVTATRGGIVDYVDATRVVIRVNDAEAQAGEVGVDIYNLIKYQRSNQNT 655 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 I+Q P V G+ + +GDV+ADG STDLGE+A+GQNM VAFMPWNGYNFEDSIL+SERVV Sbjct: 656 NIHQRPIVKKGDKLSKGDVIADGASTDLGEIAIGQNMLVAFMPWNGYNFEDSILISERVV 715 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 EDR+T+IHI+EL ++RDTKLG EEIT DIPN+ E L++LDESGI+Y+GAEV GD L Sbjct: 716 AEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDTL 775 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 VGKVTPKGET LTPEEKLLRAIFGEKASDVKD+SLRV G SGTVIDVQVFTR+G E Sbjct: 776 VGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGDELPA 835 Query: 944 RALEIEEMQLKQAKK 958 L++ ++ + ++ Sbjct: 836 GVLKMVKVYIAVKRR 850 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 234/487 (48%), Positives = 306/487 (62%), Gaps = 26/487 (5%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVS 925 IV G +++ GD++ G T GE + + +L A + +DS S RV Sbjct: 662 IVKKGDKLSKGDVIADGASTDLGEIAI--GQNMLVAFMPWNGYNFEDSILISERVVAEDR 719 Query: 926 GTVIDVQ--VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 T I ++ V + + + L + + + +E I+ G LV Sbjct: 720 YTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDTLVGKV 779 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + P ++ L ++ + L + ++ + +GD+L Sbjct: 780 TPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTR-----EGDELP 834 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 GVLK+VKVY+AVKRR+QPGDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVLNPLGV Sbjct: 835 AGVLKMVKVYIAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPYLADGTPVDIVLNPLGV 894 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNIGQ+LE HLG A KG+G +I ML+++ ++R F+++ Y+ +K DL+ Sbjct: 895 PSRMNIGQVLEVHLGWAGKGLGQRIGDMLQREAASTEIRGFLEQVYN---STGRKEDLAQ 951 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR----------LY 1213 SD EV +A+ L G+P A+PVFDGA E EI ++L+L + + LY Sbjct: 952 LSDAEVQEMAKELTSGVPFASPVFDGATEKEIGDMLQLAYPDDVAKAKGLTATRTQAQLY 1011 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGR+G+ FER TVGYM+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEM Sbjct: 1012 DGRSGDAFERTTTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1071 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEAYGA+Y LQEMLTVKSDDV GRTK+Y+NIV G H +E GMPESFNVL+KEIRSL Sbjct: 1072 EVWALEAYGASYVLQEMLTVKSDDVQGRTKVYENIVKGEHSIEAGMPESFNVLVKEIRSL 1131 Query: 1334 GINIELE 1340 GI+IEL+ Sbjct: 1132 GIDIELD 1138 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 169/421 (40%), Positives = 240/421 (57%), Gaps = 50/421 (11%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSV 56 M Y+YTE+KRIRK+FG R VL++PYLL +Q D++ F++ D GL+AAF + Sbjct: 1 MAYTYTERKRIRKNFGSRDSVLEIPYLLQMQKDAYTAFLQADVGPKKRTNEGLQAAFEAA 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT--- 113 FPI S++G E++Y+ Y L +P FDV+ECQ RG+TY++ +R K++L+IY+RE+ G Sbjct: 61 FPIVSHNGFVEMKYLEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTGQNKV 120 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 VK++KEQEVYMGE+PLMT G+F+INGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ Sbjct: 121 VKEVKEQEVYMGEVPLMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 ARIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ E IL FF I Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQGAYIS 240 Query: 234 DNKLQMELVPE---------------------------RLRGETASFDIEANGKVYVEK- 265 E V E RL ++D+ G++ Sbjct: 241 QTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAK 300 Query: 266 -GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC--AANMELSLDLL 322 GR + + +D + ++++ V+ G+ D + C L Sbjct: 301 MGRSESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQYRTGL 360 Query: 323 AKLSQSGHKRI-----ETLFTNDLDHGPYISETLRV-------DPTNDRLSALVEIYRMM 370 A++ ++ +R+ E L +DL + IS L+ ++ + L EI Sbjct: 361 ARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMNQTNPLAEITHKR 420 Query: 371 R 371 R Sbjct: 421 R 421 >UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax=Thermotogaceae RepID=RPOB_PETMO Length = 1187 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 380/974 (39%), Positives = 562/974 (57%), Gaps = 105/974 (10%) Query: 8 KKRIRKDFGKRPQVLDV-PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ------ 60 +R RK FGK P+ ++ L+ IQ DSF+ F+++ + + + PI+ Sbjct: 9 GRRERKFFGKVPEKTEIYEDLVKIQKDSFRDFLDKK------IMESIKRYMPIKIPVKAS 62 Query: 61 -SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 + + +V + + F EC+ +G+TY+ +K+R+ T + I++ Sbjct: 63 GKKNKEFLIDFVDVKFEDSSFSENECRDKGLTYAGKAYLKVRIT------DSATGEMIEK 116 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 ++++ IP MT+ G F++NG ERVIV+QL RSPGV+F ++ S K ++ A +P Sbjct: 117 DDIFLCNIPYMTERGIFIVNGAERVIVNQLVRSPGVYFIKEEETDTS--KEMFIAHFLPI 174 Query: 180 RGSWLDFEFDP---KDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEIRDN 235 +G+WL+ ++P K+ L VRIDR+RK + LRAL Y + IL LF +++ + Sbjct: 175 KGAWLEILYNPNPGKEVLQVRIDRKRKFNFFLFLRALGYENDLDILRLFPKEIDLDDE-- 232 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 VE + L ++ ++ P + G Sbjct: 233 ---------------------------VELSNYNNCTVLSDLSFQELDDMDPPRKSTYGM 265 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + + +L L + K + + + + Sbjct: 266 KLYE---------------------VLELLKKYEIKSVTVAHLVAEITLEKMKKRYEKEE 304 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL------ 409 L A EI+ ++P E P + A+ E+++F+ +++D S +GR K L Sbjct: 305 RLTSLEAYKEIFSKLKPTEIPRAQKAKEEIEDMYFNPEKFDFSQIGRQKIQVKLRKAYID 364 Query: 410 LREEIEGSGI----------------LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 E+E I + K DII + L+ ++ +D DHLGN+R+ Sbjct: 365 YLREVEKKDISEDMEDKIKYPIKTFAVDKLDIILSARYLLHVKENIEGLDTRDHLGNKRV 424 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLS 512 RSVGE+ + +F ++ + E+L+ + ++ + PQ +IN++ I A +FF SSQLS Sbjct: 425 RSVGELMQIEFERAFSKMIQHAPEKLAGVQSINKISPQSLINSRSIMTAFHQFFASSQLS 484 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 QF+DQ NPL+E+THKRR+SA+GPGGL RE A FEVRDVH +HYGR+CPIETPEG NIGLI Sbjct: 485 QFLDQVNPLAELTHKRRLSAIGPGGLKREHAKFEVRDVHHSHYGRMCPIETPEGANIGLI 544 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE 631 S+++ A+ +EYGFL+TPY +V V + I YLSA EE Y IA A++ + E+G VE Sbjct: 545 TSMAILAKVDEYGFLKTPYYRVKHAKVDLNNIVYLSADEEELYRIAPASAEIGEDGSLVE 604 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 + + R G+ SLF +D+++Y+ V+ +Q+ SV A+LIPFLEHDDANRALMG+NMQRQAVP Sbjct: 605 EYIEARYLGKVSLFHKDEIEYISVTPKQIASVSAALIPFLEHDDANRALMGSNMQRQAVP 664 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM-----YPGEA 746 LR P VGTG+E A DSG +AK G+V YVD +IVI ++E E Sbjct: 665 LLRPQAPFVGTGVEWLAARDSGYLIMAKHKGIVDYVDGRKIVITRLDEENNVLKDSNDEP 724 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 D Y L KY RSNQ+ CINQ+P V++G+ V +G +ADGPS D+GELALG+N+ + F+P Sbjct: 725 LKDEYTLLKYVRSNQDMCINQVPIVNVGDVVTKGQAIADGPSMDMGELALGRNIFIGFLP 784 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 W GYNFED+I+VS+ +++ D FT+IHI+ + DT+LGPEEITADIPNV + L LD Sbjct: 785 WEGYNFEDAIVVSQELLENDAFTSIHIEVFETKAMDTQLGPEEITADIPNVKKELLRNLD 844 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 E GIV IG+ V+ GDILVGKVTP+GE+ TPEEKL++++FG+K D+KDSSL VP+G+ G Sbjct: 845 EEGIVKIGSYVSSGDILVGKVTPRGESDTTPEEKLIKSVFGDKGRDIKDSSLTVPHGIEG 904 Query: 927 TVIDVQVFTRDGVE 940 VIDVQ+F R + Sbjct: 905 RVIDVQIFDRKDIP 918 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 163/427 (38%), Positives = 225/427 (52%), Gaps = 71/427 (16%) Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS--EELQILEAGLFSRIRAVLVAGGVEA 986 I ++VF ++ EI K+ L +E I++ G + +LV Sbjct: 809 IHIEVFETKAMDTQLGPEEITADIPNVKKELLRNLDEEGIVKIGSYVSSGDILVGKVTPR 868 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + D P ++ ++ D+ + + L + + ++ ++ + L GV Sbjct: 869 GESDTTPEEKLIKSVFGDKGRDIKDSSLTVPHGIEGRVIDVQIFDRKDIPS----LEIGV 924 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 K VKV++A K+ +Q GDK+AGRHGNKGVIS I EDMP+ +GTP+ ++L+PLGVPSR Sbjct: 925 NKYVKVFIATKKTLQVGDKLAGRHGNKGVISTILNKEDMPFLPDGTPLQMLLSPLGVPSR 984 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MNI G + L Sbjct: 985 MNI---------------GQVLELHLGWL------------------------------- 998 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL-----------GDLPTSGQIRLYDG 1215 ++ ATP+FDGA E+EI + L +G+I L DG Sbjct: 999 --------SMLTNDYYATPIFDGATESEIMDELSKVREEHELYLGDDPDQPNGKIVLRDG 1050 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 RTGE F+ PV VG MYMLKL+H+ DK+HARSTG YSL+ QQPLGGKA FGGQRFGEMEV Sbjct: 1051 RTGEPFDFPVAVGSMYMLKLSHIAKDKIHARSTGPYSLIHQQPLGGKAHFGGQRFGEMEV 1110 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 WALEA+GAA+TL EMLT KSDD+ GR ++YK I+ G + EPG+PESF VL KE++ L + Sbjct: 1111 WALEAHGAAHTLNEMLTYKSDDIKGRNEVYKAILKGENLPEPGIPESFKVLTKELQGLML 1170 Query: 1336 NIELEDE 1342 +I+L DE Sbjct: 1171 DIKLYDE 1177 >UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 Tax=Bacteria RepID=RPOB_MYCCT Length = 1287 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 405/1082 (37%), Positives = 607/1082 (56%), Gaps = 158/1082 (14%) Query: 1 MVYSYTE--KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 M Y + + R+D+ K L +P L+ IQ ++F+ F G++ FP Sbjct: 1 MAYKIRKINRNVERRDYTKVSMNLSLPNLIGIQTETFEWF------KTKGIQEVLDEFFP 54 Query: 59 IQSYSGNSELQYVSYRLGEPVFDV----QECQIRGVTYSAPLRVKL-------------- 100 I S+ G+S L ++ EP V +E +I A L++ + Sbjct: 55 ILSFDGSSVLTLENWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTEEIQKEFDGVD 114 Query: 101 ---------------------------------RLVIYEREAPEGTVKDIKEQ------- 120 + I + E P+ DI E Sbjct: 115 QEDTLKVLTHWLEEKTGNGNITFKQQSQNSYFFEITIKKSEKPDLIQIDIIEDKKTSLIC 174 Query: 121 --------EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG +F+ + + +G+++Y Sbjct: 175 NVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPGAYFNKELNRK--TGEMIY 232 Query: 173 NARIIPYRGSWLDFEFDPKDN-------LFVRIDRRRKLPATIILRALNYTTEQILDLFF 225 A IIP RG+WL++E D K L+V+ID+ RK AT +L A + + IL++F Sbjct: 233 FADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDILNIFD 292 Query: 226 EKVI-------------FEIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRIT 270 + F+I + E+ + +GETA+ + + + +K + Sbjct: 293 NDEVLVETLQQDSIIGDFKIDWSNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDL 352 Query: 271 ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGH 330 + R K + + I KV+A+D +D + ++ A + E++ + + ++S+ Sbjct: 353 TKAGRFKLKQKLSI----KNRILNKVIAEDILDANNN-VLIAKDTEVTKNNIQEISKILD 407 Query: 331 KRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFF 390 + + ++ L P +R + +Y+ Sbjct: 408 QDVMSIDLKYLSDIPG-----------NRKVQKIRVYKD--------------------- 435 Query: 391 SEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN 450 SE + D + + + ++ DI+ + L++++ GE+DDID+LGN Sbjct: 436 SELKTDTTCL--------IGLTNSSNEEFITVADILSTVSYLLNLKYNIGEIDDIDNLGN 487 Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 RR+R+VGE+ +NQFR+GL R+++ VKE+L+ DL + +INAKP++A + EFF SQ Sbjct: 488 RRVRTVGELLQNQFRMGLNRIDKNVKEKLATSDLYKVKTSTIINAKPLTAIIGEFFNLSQ 547 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 LSQFMDQ NPLSE+T+KRR++ALGPGGL+R+RAG EVRDVHP+HYGR+CPIETPEGPNIG Sbjct: 548 LSQFMDQINPLSELTNKRRLTALGPGGLSRDRAGLEVRDVHPSHYGRICPIETPEGPNIG 607 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVT-DEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 LIN+LS YA+ NEYGF+ TPYRKV +G++ D++ YL+A +E N++IAQ+N N DE G Sbjct: 608 LINNLSTYARVNEYGFITTPYRKVINGIIQNDQVEYLTADQEKNFIIAQSNVNQDENGKI 667 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 +++++ R G+ + +++ Y+DVS +Q+VSV S IPFLE+DDANRALMGANMQRQA Sbjct: 668 LDEIIVSRFNGDDYMAKVEEIHYIDVSPKQIVSVATSGIPFLENDDANRALMGANMQRQA 727 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 VP ++ + P+V TG+E A DSG VAK +V+YVD+ I+ GE+GI Sbjct: 728 VPLIKPESPIVATGIEFEAARDSGEAIVAKEDAIVKYVDSKTII--------TDGESGIR 779 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y L+ Y RSN T + Q P V +G+ V++G+++ADGPS D GELA+GQN+ VAF +NG Sbjct: 780 TYILSDYERSNNGTSLTQSPIVKVGDVVKKGEIIADGPSMDQGELAIGQNVVVAFSTYNG 839 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YNFED+I++SER+V +DRFT+IHI E R+TK G EE+T +IPN+ E A LD G Sbjct: 840 YNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTREIPNMSEQAKRHLDAEG 899 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV IG EV GD+LVGKVTPKG+ QL+PE+KLL AIFGEK+ +VKD+SLRVPNG G V Sbjct: 900 IVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRNVKDNSLRVPNGGEGIVQ 959 Query: 930 DVQVFTR------DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 ++ F DG+E +E+ ++ + Q +K + G I +L Sbjct: 960 SIKRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKMSGRHGNKGIISRILPIED 1019 Query: 984 VE 985 + Sbjct: 1020 MP 1021 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 168/429 (39%), Positives = 233/429 (54%), Gaps = 70/429 (16%) Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAK------------KDLSEELQILEAGLFSR 974 VID + + + D+ LE+ + Q + K + I+ G + Sbjct: 852 IVIDDRFTS---IHIDEYTLEVRNTKQGQEEVTREIPNMSEQAKRHLDAEGIVAIGTEVK 908 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE-KKLEAKR 1033 + VLV ++ P D+ L ++ + + L K+ +AK Sbjct: 909 VGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRNVKDNSLRVPNGGEGIVQSIKRFKAKS 968 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 G +L +++++KVY+ KR+IQ GDKM+GRHGNKG+IS+I PIEDMP+ E+GTP Sbjct: 969 ALNPDGIELPADIIEVIKVYVVQKRKIQEGDKMSGRHGNKGIISRILPIEDMPHLEDGTP 1028 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VDI+LNP GVPSRMN IG + L + Sbjct: 1029 VDIILNPQGVPSRMN---------------IGQILEIHLGMAAK---------------- 1057 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + + TPVF+G E E++E++ + G++ L Sbjct: 1058 -----------------------KLNQKVITPVFEGLNEKELEEIMAEAGMTNYGKVTLI 1094 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DG+TGE F++P+ VG MYMLKL+H+VDDK+HAR+ G YSL+TQQPLGGKAQ GGQRFGEM Sbjct: 1095 DGQTGEPFDKPIAVGVMYMLKLSHMVDDKIHARNVGPYSLITQQPLGGKAQNGGQRFGEM 1154 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEAYGAA+TL+E+LT+KSDD+ GR+K Y+ IV EPG+PESFNVL KEI L Sbjct: 1155 EVWALEAYGAAHTLREILTIKSDDIKGRSKTYEAIVRSKRIPEPGIPESFNVLSKEIMGL 1214 Query: 1334 GINIELEDE 1342 G N+ + DE Sbjct: 1215 GFNMYMIDE 1223 >UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridia RepID=RPOB_CARHZ Length = 1132 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 395/792 (49%), Positives = 515/792 (65%), Gaps = 44/792 (5%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K EI++ ++ + P L E +F +V + + R + + + K Sbjct: 95 LLNKETGEIKEQEVFLGDFP--LMTEKGTFIFNGAERVVISQMVRSPGVYFSEQVDPNGK 152 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD---LLAKLSQSGHKRIETLFTND 340 + + I + ++ + + + L LL L RI LF Sbjct: 153 KMYL-ATIIPNRGAWLEFETDVNDHIYVRIDRTRKLPVTVLLKALGYESKGRIAELF--- 208 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 DH I TL D T+ R AL+EIY+ +RPGEPPT E+A++L +++FF RYDL V Sbjct: 209 -DHDDKIIATLERDNTDSREEALIEIYKKLRPGEPPTVESAKTLLDSMFFDPKRYDLGNV 267 Query: 401 GRMKFNRSLLREEI------------------------EGSGILSKDDIIDVMKKLIDIR 436 GR K + L + E L+ +DII ++ L+ + Sbjct: 268 GRYKLFKKLNHGVLYRYLEEDGEKEYDKYLNDYVPVKREFIRELTNEDIIYTIRYLLGLM 327 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 G+G+VDDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ER+++ D D+L PQ +IN + Sbjct: 328 RGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVRERMTIQDADSLTPQVLINTR 387 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 PI AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYG Sbjct: 388 PIVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYG 447 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD--GVVTDEIHYLSAIEEGNY 614 R+CPIETPEGPNIGLI +L+ YA+ NE+GF+ETPYRKV GVVT+EI YL+A EE Y Sbjct: 448 RMCPIETPEGPNIGLIGNLTTYARVNEFGFIETPYRKVDKERGVVTNEIVYLTADEEEKY 507 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 +IAQAN L EG F++++V R E +VD++DVS +QV SV SLIPFLEHD Sbjct: 508 IIAQANVRLSPEGKFLDEMVNARHGSEILHVEPSKVDFVDVSPKQVFSVATSLIPFLEHD 567 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DANRALMGANMQRQAVP +R + P+VGTG+E A DSGV +AK GVV+ V A IVI Sbjct: 568 DANRALMGANMQRQAVPLIRTEAPVVGTGIEYKAAKDSGVVVLAKNPGVVERVTADEIVI 627 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + ++ + ID Y L K+ RSNQ TCINQ P V GE VE+ ++ADGPSTD GEL Sbjct: 628 RNDQGQ-------IDRYKLIKFQRSNQGTCINQKPIVRKGERVEKDQIIADGPSTDHGEL 680 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 ALG+N+ VA+MPW GYN+ED+IL+SE++V+ED FT+IHI+E C +RDTKLGPEEIT DI Sbjct: 681 ALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYECDARDTKLGPEEITRDI 740 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 PNVGE AL LDE GI+ IGAEV GDILVGKVTPKGET+LT EE+LLRAIFGEKA +V+ Sbjct: 741 PNVGEDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVR 800 Query: 915 DSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 D+SLRVP+G SG V+DV+VF+R+ G E + + + Q +K + G Sbjct: 801 DTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGDKMAGRHGNKG 860 Query: 974 RIRAVLVAGGVE 985 + +L + Sbjct: 861 VVARILPEEDMP 872 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 195/484 (40%), Positives = 267/484 (55%), Gaps = 76/484 (15%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G V I+ G T GE L + +L A + + +D+ L +S + Sbjct: 656 IVRKGERVEKDQIIADGPSTDHGELAL--GKNVLVAYMPWEGYNYEDAIL-----ISEKL 708 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + VFT +E+ + ++ ++ +D+ +E I+ G R + Sbjct: 709 VKEDVFTSIHIEEYECDARDTKLGPEEITRDIPNVGEDALKDLDERGIIRIGAEVRPGDI 768 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + + +R L ++ ++ + L + E K ++ K Sbjct: 769 LVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESG----KVVDVKVFSREN 824 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L+PGV +V+VY+A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTPV+IVL Sbjct: 825 GDELSPGVNMLVRVYIAQKRKISVGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVEIVL 884 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNI G + L + Sbjct: 885 NPLGVPSRMNI---------------GQILECHLGWAAKAL------------------- 910 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 G+ +ATP+F+GA E +I E L+ LP G+I + DGRTG Sbjct: 911 --------------------GINVATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTG 950 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F+ VTVGY+YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 951 EPFDSRVTVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1010 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE+LT+KSDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG++++ Sbjct: 1011 EAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQSLGLDVK 1070 Query: 1339 LEDE 1342 + + Sbjct: 1071 VLTD 1074 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 112/338 (33%), Positives = 181/338 (53%), Gaps = 35/338 (10%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 K+IR + K P++L++PYL+ IQ S+Q F+++ GL FR + PI ++ Sbjct: 3 PVQVGKKIRYSYAKFPEILELPYLIEIQKKSYQWFLDE------GLREVFREISPITDFT 56 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 GN L+++ Y LG+P + V+EC+ R TYSAPLRVK+RL+ E +IKEQEV+ Sbjct: 57 GNLSLEFLDYYLGKPKYSVEECKERDFTYSAPLRVKVRLLNKE-------TGEIKEQEVF 109 Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183 +G+ PLMT+ GTF+ NG ERV++SQ+ RSPGV+F + +GK +Y A IIP RG+W Sbjct: 110 LGDFPLMTEKGTFIFNGAERVVISQMVRSPGVYFSE---QVDPNGKKMYLATIIPNRGAW 166 Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIF--------EIRD 234 L+FE D D+++VRIDR RKLP T++L+AL Y ++ +I +LF Sbjct: 167 LEFETDVNDHIYVRIDRTRKLPVTVLLKALGYESKGRIAELFDHDDKIIATLERDNTDSR 226 Query: 235 NKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + +E+ + GE + + ++ + R R KL + + Sbjct: 227 EEALIEIYKKLRPGEPPTVESAKTLLDSMFFDPKRYDLGNVGR------YKLFKKLNHGV 280 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGH 330 + + +D E + + + + + +L+ Sbjct: 281 LYRYLEED--GEKEYDKYLNDYVPVKREFIRELTNEDI 316 >UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 Tax=cellular organisms RepID=RPOB_ANASP Length = 1131 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 362/791 (45%), Positives = 491/791 (62%), Gaps = 21/791 (2%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K +I++ ++ + +P L + +F I +V V + R + + + + Sbjct: 101 LLNKETGDIKEQEVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKSEIDKNGR 158 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 I + + + + + L L G E + L H Sbjct: 159 RTY-SASLIPNRGAWLKFETDRNDLVWVRIDKTRKLSAQVLLKALGLSDNEIF--DALRH 215 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 Y +T+ + AL+E+YR +RPGEPPT + L ++ FF RYDL VGR Sbjct: 216 PEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQQLLDSRFFDPKRYDLGRVGRY 275 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K N+ L + +L+ DI+ + LI++ G +DDIDHLGNRR+RSVGE+ +NQ Sbjct: 276 KLNKKLRLSVPDTVRVLTSGDILAAVDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQ 335 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 RVGL R+ER ++ER+++ D + L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E Sbjct: 336 VRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAE 395 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 +THKRR+SALGPGGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+ +A+ N+ Sbjct: 396 LTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNQ 455 Query: 584 YGFLETPYRKVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 YGFLETP+R V +G V Y++A EE + +A + +DE G+ + V R + E Sbjct: 456 YGFLETPFRPVENGRVRFDQPAAYMTADEEDDLRVAPGDIPVDENGYIIGPQVPVRYRQE 515 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 S + +QVDY+ VS Q+VSV S+IPFLEHDDANRALMG+NMQRQAVP L+ ++PLVG Sbjct: 516 FSTTTPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQRQAVPLLKPERPLVG 575 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK------------VNEDEMYPGEAGID 749 TG+E A DSG+ V++ G V YVDA+ I ++ + ++ + Sbjct: 576 TGLEAQGARDSGMVIVSRTDGDVVYVDATEIRVRVSGQLPTASGKSTDNGQLTSQKGQEI 635 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y ++KY RSNQ+TC+NQ P V +GE V G VLADG ST+ GELALGQN+ VA+MPW G Sbjct: 636 RYTVSKYQRSNQDTCLNQKPLVRIGERVVAGQVLADGSSTEGGELALGQNIVVAYMPWEG 695 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN+ED+IL+SER+VQ+D +T+IHI++ +R TKLGPEEIT +IPNVGE AL +LDE G Sbjct: 696 YNYEDAILISERLVQDDIYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQLDEQG 755 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 I+ IGA V GDILVGKVTPKGE+ PEEKLLRAIFGEKA DV+D+SLRVPNG G V+ Sbjct: 756 IIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVV 815 Query: 930 DVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 DV++FTR+ G E A + + + Q +K + G I +L + Sbjct: 816 DVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPIEDMPY-L 874 Query: 989 LDKLPRDRWLE 999 D P D L Sbjct: 875 PDGSPVDIVLN 885 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 190/491 (38%), Positives = 267/491 (54%), Gaps = 69/491 (14%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ +V IG V G +L G T GE L + ++ A + + +D+ L Sbjct: 651 LNQKPLVRIGERVVAGQVLADGSSTEGGELAL--GQNIVVAYMPWEGYNYEDAIL----- 703 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI-------- 975 +S ++ ++T +EK EIE Q K ++++ E+ + ++ Sbjct: 704 ISERLVQDDIYTSIHIEK----YEIEARQTKLGPEEITREIPNVGEDALRQLDEQGIIRI 759 Query: 976 ------RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL 1029 +LV + D+ P ++ L ++ + + L E + +L Sbjct: 760 GAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRL 819 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 + QGD+L PG +V+VY+A KR+IQ GDKMAGRHGNKG+IS+I PIEDMPY Sbjct: 820 FTR----EQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPIEDMPYLP 875 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 +G+PVDIVLNPLGVPSRMN+GQ+ E LG A +G + + Sbjct: 876 DGSPVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLGVRFKITPFDEM------------- 922 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 G + +++ + A++ K+ + + G+ Sbjct: 923 -YGEESSRRIVHGKLQE-----------------------ARDETGKDWV--YNPDDPGK 956 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 I +YDGRTGE F+RPVT+G YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQR Sbjct: 957 IMVYDGRTGEAFDRPVTIGVAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQR 1016 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 FGEMEVWALEA+GAAYTLQE+LTVKSDD+ GR + IV G PG PESF VL++E Sbjct: 1017 FGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRE 1076 Query: 1330 IRSLGINIELE 1340 ++SLG++I + Sbjct: 1077 LQSLGLDIAVH 1087 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 167/340 (49%), Gaps = 34/340 (10%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 +P L+ IQ SF+ F+E+ GL S PI Y+G EL ++ Y+L Sbjct: 21 IEPAFLLPDLIEIQRSSFRWFLEE------GLIEELNSFSPITDYTGKLELHFLGHNYKL 74 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 EP + V+E + R TY+ + V RL+ E DIKEQEV++G++PLMTD GT Sbjct: 75 KEPKYSVEEAKRRDSTYAVQMYVPTRLLNKE-------TGDIKEQEVFIGDLPLMTDRGT 127 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D D ++ Sbjct: 128 FIINGAERVIVNQIVRSPGVYYKSEIDK---NGRRTYSASLIPNRGAWLKFETDRNDLVW 184 Query: 196 VRIDRRRKLPATIILRALNYTTEQILD------LFFEKVIF--EIRDNKLQMELVPERLR 247 VRID+ RKL A ++L+AL + +I D F + + + + + MEL + Sbjct: 185 VRIDKTRKLSAQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRP 244 Query: 248 GETASFDIEA---NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 GE + + + + K + +L K + V +V+ I Sbjct: 245 GEPPTVLGGQQLLDSRFFDPKRYDLGRVGRYKLNKKLRLSVPDTV-----RVLTSGDILA 299 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + LI S+D + L + + L N + G Sbjct: 300 AVDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQVRVG 339 >UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Tax=Bacteria RepID=RPOB_FRASC Length = 1141 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 371/768 (48%), Positives = 499/768 (64%), Gaps = 17/768 (2%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P L +F I +V V + R + + Sbjct: 115 FTNNNTGEIKSQTVFMGDFP--LMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDKASD 172 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + L G L Sbjct: 173 KDLYSCKVIPSRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARIL--ERFGD 230 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 P + TL D T + AL++IYR +RPGEPPTRE+A++L ENLFF+ RYDL+ VGR Sbjct: 231 FPSMRITLEKDHTAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRY 290 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG----KGEVDDIDHLGNRRIRSVGEM 459 K N+ L G+L+++DI+ ++ ++ + G + EVDDIDH GNRRIR+VGE+ Sbjct: 291 KVNKKLSLGVAHDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTVGEL 350 Query: 460 AENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 +NQ R+GL R+ER V+ER++ D++ + PQ +IN +P+ A++KEFFG+SQLSQFMDQ N Sbjct: 351 IQNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQTN 410 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 PL+ +THKRR++ALGPGGL+RERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SLS +A Sbjct: 411 PLAGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSTFA 470 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 + N +GF+ETPYRKV +G VT +I +L+A EE +V AQAN+ L +G F ED V R K Sbjct: 471 RVNPFGFIETPYRKVENGRVTGQIDWLTADEEDRHVKAQANTPLRPDGSFAEDRVLVRRK 530 Query: 640 G-ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 G E D+VDYMDVS +Q+VSV ++IPFLEHDDANRALMG+NMQRQ+VP LR++ P Sbjct: 531 GGEVEFIPPDEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMQRQSVPLLRSEAP 590 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 LVGTGME A D+G V + GVV+ + A I + ++ Y L K+ R Sbjct: 591 LVGTGMEARAAKDAGDVVVCAQAGVVEDLSADYITVMHDDGTR-------RTYRLAKFRR 643 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 SNQ TCINQ P V+ G+ V G V+ADGP TD GE+ALG+N+ VAFMPW G+N+ED+I++ Sbjct: 644 SNQGTCINQKPIVNEGDRVGAGQVIADGPCTDNGEMALGKNLLVAFMPWEGHNYEDAIIL 703 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 S+R+VQ+D ++IHI+E +RDTKLGPEEIT DIPNV E L+ LDE GI+ IGAEV+ Sbjct: 704 SQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVLADLDERGIIRIGAEVS 763 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-D 937 GD+LVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G SG VI V+VF+R D Sbjct: 764 PGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSRED 823 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G E E+ + + Q +K + G I +L A + Sbjct: 824 GDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAKILPAEDMP 871 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 205/489 (41%), Positives = 278/489 (56%), Gaps = 60/489 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G V G ++ G T GE L + LL A + + +D+ + +S + Sbjct: 655 IVNEGDRVGAGQVIADGPCTDNGEMAL--GKNLLVAFMPWEGHNYEDAII-----LSQRL 707 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + V + +E+ + ++ ++ +D+ +E I+ G V Sbjct: 708 VQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVLADLDERGIIRIGAEVSPGDV 767 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + + P +R L ++ ++ + L + E K + + Sbjct: 768 LVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESG----KVIGVRVFSRED 823 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV ++V+VY+A KR+I GDK+AGRHGNKGVI+KI P EDMP+ E+GTPVD+VL Sbjct: 824 GDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAKILPAEDMPFLEDGTPVDVVL 883 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP GVP RMNIGQILETHLG AK Q + ++ +R +GAD Sbjct: 884 NPHGVPRRMNIGQILETHLGWVAKT----------GWQVDSGTEDWKERLRGIGADAA-- 931 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT--------SGQI 1210 G +ATPVFDGA+E EI LL SG+ Sbjct: 932 ------------------SAGTNVATPVFDGAREEEITGLLDSTLPNRDGIQLIGSSGKA 973 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 +L+DGRTGE + PV VGY+Y+LKL HLVDDK+HARSTG YS++TQQPLGGKAQFGGQRF Sbjct: 974 KLFDGRTGEPYPYPVAVGYIYILKLLHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRF 1033 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEMEVWALEAYGAAY LQE+LT+KSDDV GR K+Y+ IV G + EPG+PESF VL+KE+ Sbjct: 1034 GEMEVWALEAYGAAYALQELLTIKSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLIKEM 1093 Query: 1331 RSLGINIEL 1339 +SL +N+E+ Sbjct: 1094 QSLCLNVEV 1102 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 108/359 (30%), Positives = 168/359 (46%), Gaps = 41/359 (11%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLEAAFRSVFP 58 F K + L+VP LL++Q SF I D GLE F+ + P Sbjct: 12 FAKIIEPLEVPDLLALQTQSFDWLIGSDAWAERVQEAIDSGRDDVPITSGLEEVFKEISP 71 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+ +SG+ L + +R P + V+EC+ + +T+SAPL V +IK Sbjct: 72 IEDFSGSMSLSFRDHRFEPPKYSVEECKDKDMTFSAPLFVTAEFT-------NNNTGEIK 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 Q V+MG+ PLMT GTFVINGTERV+VSQL RSPGV+F+ K +S K LY+ ++IP Sbjct: 125 SQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDK--ASDKDLYSCKVIP 182 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK-- 236 RG+WL+FE D +D + VRIDR+R+ T++L+AL + +IL+ F + I K Sbjct: 183 SRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARILERFGDFPSMRITLEKDH 242 Query: 237 ------LQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 +++ + GE + + ++ R A+ R K + + Sbjct: 243 TAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRYKVN---KKLSLG 299 Query: 289 VEYIAGKVVAKDYIDESTGELICAAN---MELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 V + G + D + + A E +D + + + L N + G Sbjct: 300 VAHDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTVGELIQNQVRLG 358 >UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Tax=Bacteria RepID=RPOB_PELTS Length = 1224 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 401/785 (51%), Positives = 511/785 (65%), Gaps = 45/785 (5%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L E +F I +V V + R + + K + I + ++ + Sbjct: 116 LMTEKGTFIINGAERVIVSQLVRSPGVYFDETIDPSGKKLY-TATIIPNRGAWLEFETDV 174 Query: 306 TGELICAANMELSLD---LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + + + L+ L ++ LF D + I ETL D T+ A Sbjct: 175 NDHIFVRIDRTRKIPATVLVRALGYGTKAQVAELFNEDKN----ILETLARDNTDSEEEA 230 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI-------- 414 LVEIY+ +RPGEPPT ++A SL +LFF RYDL+ VGR K + L + Sbjct: 231 LVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYRYGPNPD 290 Query: 415 -----------------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 E L+K+DII+ ++ L+ + NG+G+VDDIDHLGNRR+RSVG Sbjct: 291 GKTVFDPYLKKEVPQKREFIRELTKEDIIETIRYLLKLMNGEGQVDDIDHLGNRRLRSVG 350 Query: 458 EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 E+ +NQFR+GL R+ER V+ER+++ D+D + PQ +IN +P+ AA+KEFFGSSQLSQFMDQ Sbjct: 351 ELLQNQFRIGLSRMERVVRERMTIQDVDVITPQVLINIRPVVAAIKEFFGSSQLSQFMDQ 410 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS Sbjct: 411 TNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLST 470 Query: 578 YAQTNEYGFLETPYRKV--TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 YA+ NE+GF+ETPYRKV + VTDEI YL+A EE YVIAQAN+ LDEEG F+E V Sbjct: 471 YARINEFGFIETPYRKVDKENRRVTDEIVYLTADEEEGYVIAQANAPLDEEGRFIEPRVN 530 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 RS E + D+VDYMDVS +QV S+ +LIPFLEHDDANRALMGANMQRQAVP L+A Sbjct: 531 ARSP-EIVVVPADRVDYMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLLKA 589 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 PLVGTG+E A DSGV +AK G V+ V ++ I I+ + +D Y L K Sbjct: 590 QAPLVGTGIEYKAARDSGVVVIAKESGTVEKVTSTHIEIRNDRGY-------LDRYKLLK 642 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 +TRSNQ TC+NQ P V GE VE G V+ADGPSTD GELALG+N+ VAFMPW GYN+ED+ Sbjct: 643 FTRSNQGTCVNQKPIVKKGERVEAGQVIADGPSTDYGELALGRNVLVAFMPWEGYNYEDA 702 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 ILVSE+ V+ED FT+IHI+E C +RDTKLGPEEIT DIPNVGE L LD+ GI+ +GA Sbjct: 703 ILVSEKTVKEDYFTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGA 762 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 EV GDILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV+VF+ Sbjct: 763 EVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFS 822 Query: 936 RD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 RD G E ++ + + Q +K + G I +L + D P Sbjct: 823 RDNGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPF-LPDGTPI 881 Query: 995 DRWLE 999 + L Sbjct: 882 EIVLN 886 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 284/511 (55%), Gaps = 44/511 (8%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG-- 926 IV G V G ++ G T GE L +L A + + +D+ L V Sbjct: 657 IVKKGERVEAGQVIADGPSTDYGELAL--GRNVLVAFMPWEGYNYEDAILVSEKTVKEDY 714 Query: 927 -TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE--ELQILEAGLFSRIRAVLVAGG 983 T I ++ + D + EI ++ L + + I+ G R +LV Sbjct: 715 FTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDILVGKV 774 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + +R L ++ ++ + L + E K ++ K GD+L Sbjct: 775 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESG----KVVDVKVFSRDNGDELP 830 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV ++V+VY+A KR+I GDKMAGRHGNKGVI++I P EDMP+ +GTP++IVLNPLGV Sbjct: 831 PGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPIEIVLNPLGV 890 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNIGQ+LE HLG AAK +G ++ + + E ++ A + +R ++ + Sbjct: 891 PSRMNIGQVLEAHLGWAAKVLGYYVSTPVFNGASEESIFEALKEAAFKESGLRSFMEKAG 950 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFD--------------------------------GAK 1191 ++EE++ E K + G Sbjct: 951 LNEEELIGAVETAEKRAGSREALIKEVEGAESSGETIMAAIERTGLTAGMVNRLEEAGMT 1010 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 + EI +K SG++ LYDGRTGE F+ P+TVGY+YMLKL HLVDDK+HARSTG Y Sbjct: 1011 KKEILGAMKKLLFARSGKMTLYDGRTGEPFDSPITVGYVYMLKLAHLVDDKIHARSTGPY 1070 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDG 1311 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G Sbjct: 1071 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKG 1130 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + EPG+PESF VL+KE++SLG+++++ E Sbjct: 1131 ENVPEPGVPESFKVLIKELQSLGLDVKVLSE 1161 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 126/340 (37%), Positives = 188/340 (55%), Gaps = 29/340 (8%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y R+R +FG+ +VLD+P L+ +Q +S++ F+E+ GL F+ + PIQ Sbjct: 1 MAYPEKVGARVRYNFGRLREVLDLPNLIEVQRNSYKWFLEE------GLREVFQDISPIQ 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 55 DFTGNLVLEFLDYTLGEPKYTVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +V+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+FD SGK LY A IIP R Sbjct: 108 DVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFDET---IDPSGKKLYTATIIPNR 164 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF--------E 231 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y T Q+ +LF E Sbjct: 165 GAWLEFETDVNDHIFVRIDRTRKIPATVLVRALGYGTKAQVAELFNEDKNILETLARDNT 224 Query: 232 IRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVK--LIEV 287 + + +E+ GE + D + ++ + R A R + +K ++ Sbjct: 225 DSEEEALVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYR 284 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 GK V Y+ + + D++ + Sbjct: 285 YGPNPDGKTVFDPYLKKEVPQKREFIRELTKEDIIETIRY 324 >UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3X7_DESAS Length = 1227 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 394/972 (40%), Positives = 553/972 (56%), Gaps = 127/972 (13%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MVY+ R R +FGK +VLD+P L+ +Q +S++ F+ + GL F + PIQ Sbjct: 4 MVYAEKLGTRERLNFGKFKEVLDLPNLIEVQRNSYKWFL------KNGLREVFHDISPIQ 57 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 58 DFTGNLVLEFLDYTLGEPKYFVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+F + SGK L++A IIP R Sbjct: 111 EVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFAE---QIDPSGKKLFSATIIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEI------- 232 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y+++ +++ F E + Sbjct: 168 GAWLEFETDVNDHVFVRIDRTRKIPATVLIRALGYSSDAMVMEEFGEDKNIQETLSRDNT 227 Query: 233 -RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +E+ GE + + ++ + R A R ++ Sbjct: 228 GSEEDALVEIYKRLRPGEPPTVESARTLLETLFFDPKRYDLANVGRYKLHKKLQ------ 281 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 V Y +E +G + E L +I E Sbjct: 282 -----HGVLYRYPEEQSG---------------------KIEYDEILKQELPVEREFIRE 315 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D + L + + +P R ++ D+ +G NR L Sbjct: 316 LTPKDILDTIKYLLRLVQGITEEKDPLGRNIEYTV----------DDIDHLG----NRRL 361 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 G L ++ + ++ + + + D+D + Q + + Sbjct: 362 R-----SVGELLQNQFRIGLSRMERVVRERMTIQDVD------------VITPQVLINIR 404 Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 V ++KE L M Q A+ G LS+ Sbjct: 405 PVVASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSR---------------- 448 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 ERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ N++GF+ET Sbjct: 449 -----------ERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINQFGFIET 497 Query: 590 PYRKV--TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 PYR+V +VT+EI YL+A E +IAQAN+ L++EG F E V R E Sbjct: 498 PYRRVDKEKRIVTNEIEYLTADVEDRNIIAQANAPLNKEGFFTEQAVNARHGHEILKVPG 557 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 +++D+MDVS +QV S+ +LIPFLEHDDANRALMGANMQRQAVP ++A P+VGTG+E Sbjct: 558 EKIDFMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLVKAQAPVVGTGVEYK 617 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 A DSGV +A++ G+V+ V A+ I+I+ ++ D + L K+TRSNQ TCINQ Sbjct: 618 AARDSGVVPLARKSGIVEKVTANDIMIRSDDGTS-------DYHKLLKFTRSNQGTCINQ 670 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V+ G+ V+ GD++ADGP+TD GELALG+N+ VAFMPW+GYN+ED+IL+SE+ V+ED Sbjct: 671 RPIVTKGQRVDEGDIIADGPATDNGELALGRNILVAFMPWDGYNYEDAILISEKAVKEDF 730 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI+E C +RDTKLGPEEIT DIPNVGE L LD+ GI+ +GAEV GDI+VGKV Sbjct: 731 FTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGKV 790 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRAL 946 TPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++DV+VF+RD G E Sbjct: 791 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSRDNGDELPPGVN 850 Query: 947 EIEEMQLKQAKK 958 + + + Q +K Sbjct: 851 HLVRVYIAQKRK 862 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 196/479 (40%), Positives = 264/479 (55%), Gaps = 66/479 (13%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG-- 926 IV G V GDI+ G T GE L +L A + +D+ L V Sbjct: 673 IVTKGQRVDEGDIIADGPATDNGELAL--GRNILVAFMPWDGYNYEDAILISEKAVKEDF 730 Query: 927 -TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE--ELQILEAGLFSRIRAVLVAGG 983 T I ++ + D + EI ++ L + + I+ G R ++V Sbjct: 731 FTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGKV 790 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + +R L ++ ++ + L + E K ++ K GD+L Sbjct: 791 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAG----KIVDVKVFSRDNGDELP 846 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV +V+VY+A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTP++IVLNPLGV Sbjct: 847 PGVNHLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPFLPDGTPIEIVLNPLGV 906 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNI G + L Sbjct: 907 PSRMNI---------------GQVLETHLGWAAR-------------------------- 925 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + G ++TPVF+GA E++I E L+ DLP + + L+DGRTGE F+ Sbjct: 926 -------------KLGCYVSTPVFNGATESDILEFLRKADLPDTAKTTLHDGRTGEPFDN 972 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 P+TVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG+ Sbjct: 973 PITVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGS 1032 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 AYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG+++++ E Sbjct: 1033 AYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGLDVKVLSE 1091 >UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNB1_9SYNE Length = 1150 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 354/777 (45%), Positives = 487/777 (62%), Gaps = 16/777 (2%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 K +I++ ++ + +P L + +F I +V V + R + + + Sbjct: 110 NKETGDIKEQEVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKAETDKHGRRT 167 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 I + + + + + L L G E + L H Sbjct: 168 Y-TANLIPNRGAWLKFETDKNDLVWVRIDKTRKLSAQVLLKALGLSDGEIF--DSLRHPE 224 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 Y +T+ + AL+E+YR +RPGEPPT + L E+ FF RYDL VGR K Sbjct: 225 YFQKTIEKEGQFSEEEALLELYRKLRPGEPPTVNGGQQLLESRFFDPKRYDLGKVGRHKL 284 Query: 406 NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 NR L E + +L+ DI+ + LI++ G DDIDHLGNRR+RSVGE+ +NQ R Sbjct: 285 NRKLRLNIPESTRVLTPQDIVSAIDYLINLEFDIGNPDDIDHLGNRRVRSVGELLQNQVR 344 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 VGL R+ER ++ER+++ D D+L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 345 VGLNRLERIIRERMTVSDADSLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELT 404 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 HKRRISALGPGGLTRERAGF VRD+HP+H+GR+CPIETPEGPN GLI SL+ +A+ N++G Sbjct: 405 HKRRISALGPGGLTRERAGFAVRDIHPSHHGRICPIETPEGPNAGLIGSLATHARVNDFG 464 Query: 586 FLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 F+ETP+ V +G + + Y++A EE + +A + +D + + + + V R + + + Sbjct: 465 FIETPFFPVVNGQIVKDKPAVYMTADEEDDLRVAPGDVPIDSDNNILGESVPVRYRQDFT 524 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + S +VDY+ VS Q++SV SLIPFLEHDDANRALMG+NMQRQAVP LR ++ LVGTG Sbjct: 525 VTSPKEVDYVAVSPVQIISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPERALVGTG 584 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 +E A DSG+ +++ GVV YVDA+ I + E +++ Y L KY RSNQ+T Sbjct: 585 LEAQAARDSGMVTISRTDGVVSYVDANWIKVTDLEGQVHS-------YELQKYQRSNQDT 637 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 C+NQ P V G V G V+ADG +T+ GE+ALGQN+ + +MPW GYN+ED+IL+SER+V Sbjct: 638 CLNQRPFVFEGTKVVAGQVMADGSATEGGEIALGQNVLITYMPWEGYNYEDAILLSERLV 697 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 ED +T+IHI++ +R TKLGPEEIT +IPNVGE AL +LDE+GI+ +GA V+ GDIL Sbjct: 698 YEDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRQLDETGIIRVGAWVSSGDIL 757 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKD 942 VGKVTPKGE+ PEEKLLRAIFGEKA DV+D+SLRVPNG G V+DV+VFTR+ G E Sbjct: 758 VGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRVFTREQGDELP 817 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 A + + + Q +K + G I +L + D P D L Sbjct: 818 PGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPY-LPDGTPIDIVLN 873 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 185/491 (37%), Positives = 262/491 (53%), Gaps = 69/491 (14%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ V+ G +V G ++ G T GE L + +L + + +D+ L Sbjct: 639 LNQRPFVFEGTKVVAGQVMADGSATEGGEIAL--GQNVLITYMPWEGYNYEDAIL----- 691 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI-------- 975 +S ++ V+T +EK EIE Q K ++++ E+ + ++ Sbjct: 692 LSERLVYEDVYTSIHIEK----FEIEARQTKLGPEEITREIPNVGEDALRQLDETGIIRV 747 Query: 976 ------RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL 1029 +LV + D+ P ++ L ++ + + L E + ++ Sbjct: 748 GAWVSSGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRV 807 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 + QGD+L PG +V+VY+A KR+IQ GDKMAGRHGNKG+IS+I P+EDMPY Sbjct: 808 FTR----EQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPYLP 863 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 +GTP+DIVLNPLGVPSRMN+GQ+ E LG A + + + +V E Sbjct: 864 DGTPIDIVLNPLGVPSRMNVGQVFEALLGWAGQNLDARF--------KVTPFDEMYGEEA 915 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 L + + + ++ + + G+ Sbjct: 916 SLETTHGKLQEARNQTGKD-------------------------------WVFNPDNPGK 944 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 I+LYDGRTGE F++ VTVG YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQR Sbjct: 945 IQLYDGRTGEPFDQEVTVGQSYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQR 1004 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 FGEMEVWALEA+GAAYTLQE+LTVKSDD+ GR + IV G PG PESF VL++E Sbjct: 1005 FGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRE 1064 Query: 1330 IRSLGINIELE 1340 ++SL ++I + Sbjct: 1065 LQSLCLDIAVH 1075 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 164/334 (49%), Gaps = 34/334 (10%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 +P L+ IQ SF+ F+ + GL S PI Y+G EL ++ YRL P + Sbjct: 34 LPDLVEIQRASFRWFLGE------GLVEELESFSPITDYTGKLELHFLGKDYRLKAPKYM 87 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 V E + R TYS + V RL+ E DIKEQEV++G++PLMTD GTF+ING Sbjct: 88 VDEAKRRDSTYSVQMYVPTRLINKE-------TGDIKEQEVFIGDLPLMTDRGTFIINGA 140 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERVIV+Q+ RSPGV++ ++ K G+ Y A +IP RG+WL FE D D ++VRID+ Sbjct: 141 ERVIVNQIVRSPGVYYKAETDK---HGRRTYTANLIPNRGAWLKFETDKNDLVWVRIDKT 197 Query: 202 RKLPATIILRALNYTTEQILDL-----FFEKVIF---EIRDNKLQMELVPERLRGETASF 253 RKL A ++L+AL + +I D +F+K I + + + +EL + GE + Sbjct: 198 RKLSAQVLLKALGLSDGEIFDSLRHPEYFQKTIEKEGQFSEEEALLELYRKLRPGEPPTV 257 Query: 254 DIEA---NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + + K + +L + + + + + +D + + Sbjct: 258 NGGQQLLESRFFDPKRYDLGKVGRHKLNRK----LRLNIPESTRVLTPQDIVSAIDYLIN 313 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 ++ + D + L + + L N + G Sbjct: 314 LEFDIG-NPDDIDHLGNRRVRSVGELLQNQVRVG 346 >UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 Tax=Bacteria RepID=RPOB_MYCLB Length = 1178 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 379/792 (47%), Positives = 505/792 (63%), Gaps = 28/792 (3%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P + E +F I +V V + R + + + Sbjct: 139 FINNNTGEIKSQTVFMGDFP--MMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTE 196 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 V+ I + ++ + + + + + L G + T Sbjct: 197 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI--TERFGF 254 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + TL D T AL++IYR +RPGEPPT+E+A++L ENLFF E RYDL+ VGR Sbjct: 255 SEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRY 314 Query: 404 KFNRSLLRE--EIEGSGILSKDDIIDVMKKLIDIRNGK------------GEVDDIDHLG 449 K N+ L E+ S L+++D++ ++ L+ + G+ E DDIDH G Sbjct: 315 KVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFG 374 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS 509 NRR+R+VGE+ +NQ RVG+ R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFFG+S Sbjct: 375 NRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTS 434 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 QLSQFMDQNNPLS +THKRR+SALGPGGL+RERAG EVRDVHP+HYGR+CPIETPEGPNI Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 GLI SLSVYA+ N +GF+ETPYRKV DGVV+DEI YL+A EE +V+AQANS +DE G F Sbjct: 495 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRF 554 Query: 630 VEDLVTCRSK-GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 +E V R K GE + +VDYMDVS +Q+VSV ++IPFLEHDDANRALMGANMQRQ Sbjct: 555 LEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 614 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 AVP +R++ PLVGTGME A+D+G VA++ GV++ V A I + ++ Sbjct: 615 AVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTR------- 667 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 Y + K+ RSN TC NQ P V G+ VE G V+ADGP T+ GE+ALG+N+ VA MPW Sbjct: 668 RTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWE 727 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 G+N+ED+I++S R+V+ED T+IHI+E +RDTKLG EEIT DIPNV + L+ LDE Sbjct: 728 GHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 787 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 GIV IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G SG V Sbjct: 788 GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKV 847 Query: 929 IDVQVFT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 I ++VF+ D E E+ + + Q +K + G I +L A + Sbjct: 848 IGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF- 906 Query: 988 KLDKLPRDRWLE 999 D P D L Sbjct: 907 LPDGTPVDIILN 918 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 199/489 (40%), Positives = 273/489 (55%), Gaps = 59/489 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G V G ++ G T GE L + LL AI + + +D+ + +S + Sbjct: 689 IVDAGDRVEAGQVIADGPCTENGEMAL--GKNLLVAIMPWEGHNYEDAII-----LSNRL 741 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 ++ V T +E+ + ++ ++ +D+ +E I+ G R + Sbjct: 742 VEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDI 801 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + + P +R L ++ ++ + L + E K + + Sbjct: 802 LVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESG----KVIGIRVFSHED 857 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 D+L GV ++V+VY+A KR+I GDK+AGRHGNKGVI KI P EDMP+ +GTPVDI+L Sbjct: 858 DDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIIL 917 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 N GVP RMN+GQILETHLG AK G KI+ L E + A Sbjct: 918 NTHGVPRRMNVGQILETHLGWVAKS-GWKIDVAGGIPDWAVNLPEELLHAAP-------- 968 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG--------QI 1210 ++TPVFDGAKE E++ LL G + Sbjct: 969 --------------------NQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKA 1008 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 L+DGR+GE F PVTVGYMY++KL+HLVDDK+HARSTG YS++TQQPLGGKAQFGGQRF Sbjct: 1009 VLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRF 1068 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEME WA++AYGAAYTLQE+LT+KSDD GR K+Y+ IV G + EPG+PESF VLLKE+ Sbjct: 1069 GEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKEL 1128 Query: 1331 RSLGINIEL 1339 +SL +N+E+ Sbjct: 1129 QSLCLNVEV 1137 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 99/292 (33%), Positives = 155/292 (53%), Gaps = 30/292 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ-----------DPEGQYGLEAAFRSVFPIQ 60 R F K + L+VP LL +Q DSF+ I D + GLE + PI+ Sbjct: 38 RISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIE 97 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +SG+ L + R E V+EC+ + +TY+APL V + +IK Q Sbjct: 98 DFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFI-------NNNTGEIKSQ 150 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 V+MG+ P+MT+ GTF+INGTERV+VSQL RSPGV+FD K S+ K L++ ++IP R Sbjct: 151 TVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDK--STEKTLHSVKVIPSR 208 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE--------I 232 G+WL+F+ D +D + VRIDR+R+ P T++L+AL +T+EQI + F I + Sbjct: 209 GAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTV 268 Query: 233 RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDV 282 ++ +++ + GE + + ++ ++ R AR R + Sbjct: 269 GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKL 320 >UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax=Thermotogaceae RepID=RPOB_THEP1 Length = 1263 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 381/1007 (37%), Positives = 569/1007 (56%), Gaps = 95/1007 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI-------- 59 +R R FGK + L +P L+ IQ S+++F+E+ GL + PI Sbjct: 7 GRRTRVSFGKTQEPLPIPDLVEIQKISYRRFLEE------GLLEVLKKFSPIYSQATRSD 60 Query: 60 -QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 + L++VS R+GEPV D EC+ +G+TYS P+ RL + ++K Sbjct: 61 LKKSDRGFALEFVSTRIGEPVVDPLECKAKGLTYSVPIYATARLTDMKS-------GEMK 113 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 E+EV++G IP MTD GTF+ING ERV+V+Q+ SPG++F S+ + Y +P Sbjct: 114 EEEVFLGYIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYI-----DREEYGGYFLP 168 Query: 179 YRGSWLDFEFDPKD-NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 RG+WL+ DP D L+ +D +K+ + L+ + Y ++ + + + ++ L Sbjct: 169 SRGAWLEVILDPYDGVLYAGLD-GKKVNLFLFLKTIGYEKDEDILSLYPTYLDADDEDSL 227 Query: 238 QME----LVPERLRGET--------ASFDIEANGKVYVEKGR-RITARHIRQLEKDDVKL 284 + L+ + G+ + D+ + + + +I + + ++L Sbjct: 228 LLHVGSILLEDIYDGDRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEKMLEL 287 Query: 285 IEVPVEYIAGKVVAKDYIDESTGEL---ICAANMELSLDLLAKLSQS------------- 328 + E + + + L + L +++ + Sbjct: 288 VSSSGEEGEEEEEKTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFFNPER 347 Query: 329 -GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR----MMRPGEPPTREAAE- 382 + N+ YI + V+ D A ++Y +++P + Sbjct: 348 YDLSEVGRYKVNERLRNAYIRYLIEVEG-EDPEEARKKVYNENSLVLKPLDIVLASRILF 406 Query: 383 SLFENLF---FSEDRYDLSAVGRMKFN-------------RSLLREEIEGSGILSKDDII 426 FE + F D Y+L + R+ R L+ G+ S ++ Sbjct: 407 DYFERRYVNDFEIDSYELRNLIRIFKEEYLEKRKTASYDLRKLVSVFRRNYGVTSDLSVL 466 Query: 427 DVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-LGD 483 ++ + +I D DHLGN+R+R+VGE+ + +F R ++A++ERL+ + Sbjct: 467 AAIRYISNINKELPSIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINS 526 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 L + Q +IN K I + V +FF +QLSQFMDQ NPLSE+THKRR+SA+GPGGL RE Sbjct: 527 LSKVSIQSLINIKSIISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESK 586 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 FE R+VH + YGR+CPIETPEG NIG I SL++Y + +EYGFL TPYRKV +G VTDE+ Sbjct: 587 VFEARNVHYSQYGRLCPIETPEGANIGFITSLAIYTKIDEYGFLMTPYRKVVNGKVTDEV 646 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 YL A EE ++ I A + +DEEG+ + + V R + L R++VD+MDVST+Q SV Sbjct: 647 VYLRANEEEDFKIVPATTPVDEEGNIIPERVVARVGEDIRLVPREEVDFMDVSTKQPFSV 706 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 ASLIPFLEHDDA+RALMG+NMQRQAVP L+A+ P VGTGME A +SG +A+ G+ Sbjct: 707 SASLIPFLEHDDASRALMGSNMQRQAVPLLKAEAPFVGTGMEWEAAKNSGYVTLAEHDGI 766 Query: 724 VQYVDASRIVIKVNEDE---MYPGEAG--IDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 V+ VDA+RIV+ ++ MY + +D Y L K+ RSNQ+T INQ P V+ G+ V+ Sbjct: 767 VKEVDAARIVVHRTDENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVK 826 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +GD +ADGP+TD+GELALG+N+ VAFMPW GYN+ED+ILVS+ +++ED FT+IHI+ Sbjct: 827 KGDPIADGPATDMGELALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYET 886 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD------ILVGKVTPKGE 892 +R+T+LGPEEITADIPNV + L LDE+GI+ +GA V ILVGKVTPKGE Sbjct: 887 QARETRLGPEEITADIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGE 946 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 TPEEK++R++FGE+ DVKD+SLR+P+GV G VI V V+ ++ + Sbjct: 947 GDTTPEEKIIRSVFGERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDI 993 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 183/501 (36%), Positives = 251/501 (50%), Gaps = 93/501 (18%) Query: 870 IVYIGAEVTGGD-ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G V GD I G T GE L +L A + + +D+ L VS + Sbjct: 818 IVNEGDFVKKGDPIADGPATDMGELAL--GRNILVAFMPWEGYNYEDAIL-----VSQEL 870 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL----SEELQILEAGLFSRI--------- 975 ++ VFT +E + + ++ D+ E L+ L+ R+ Sbjct: 871 LEEDVFTSIHIEVYETQARETRLGPEEITADIPNVSKELLKNLDENGIIRVGAYVVSDYG 930 Query: 976 ---RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAK 1032 +A+LV + D P ++ + + + + L + + + Sbjct: 931 VGSQAILVGKVTPKGEGDTTPEEKIIRSVFGERGRDVKDTSLRLPHGVEGRVIRVDVYDQ 990 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 +L GVLK+V+VY+A ++ + GDK+AGRHGNKGV+S I P EDMP+ +GT Sbjct: 991 NDIA----ELGAGVLKLVRVYVASRKTLDIGDKLAGRHGNKGVVSNILPKEDMPFLPDGT 1046 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLG 1152 PV +VLNPLG+PSRMN+ G + L ++ Sbjct: 1047 PVQMVLNPLGIPSRMNV---------------GQILETHLGWLAKLT------------- 1078 Query: 1153 ADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI---------KELLKLGD 1203 G ATPVF+GAKE EI K L LGD Sbjct: 1079 --------------------------GKWFATPVFEGAKEDEILRPLYEERKKRGLHLGD 1112 Query: 1204 --LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 +G++ L DGRTGE F+ PV VGYMYMLKL H+ +K+HARSTG YSL+ QQPLGG Sbjct: 1113 DENNPNGKVVLRDGRTGEPFDNPVVVGYMYMLKLVHIAKEKIHARSTGPYSLIHQQPLGG 1172 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 K+ FGGQR GEMEVWALEAYGAA+TL EMLT+KSDD+ GR + YK I+ + EPG+PE Sbjct: 1173 KSHFGGQRLGEMEVWALEAYGAAHTLAEMLTIKSDDIKGRNEAYKAILKNMNIPEPGVPE 1232 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 SF VL+KE+R L +++ L DE Sbjct: 1233 SFRVLIKELRGLALDVRLYDE 1253 >UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacteria (class) RepID=C7M2W5_ACIFD Length = 1181 Score = 825 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 387/859 (45%), Positives = 506/859 (58%), Gaps = 52/859 (6%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIIL-RALNYTTEQILDL-FFEKVIFEIRDNKLQMEL 241 L+ E+DP D + K A + + Y + F + +EI+ + M Sbjct: 60 LELEYDPSDPDLAPV---PKFSAEECREKDMTYAGPIFVRARFLNRQTYEIKQQIVFMGD 116 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI----EVPVEYIAGKVV 297 P L + +F I +V V + R + + E++ V Sbjct: 117 FP--LMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQHTVVTATINPYRGEWLEFDVE 174 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 A+ D + G + +L +E L + P + + D + Sbjct: 175 ARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWA---KEDHSQ 231 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE---- 413 R AL+E++R +RPGEP EAA FE FF RYDL+ VGR K ++ L E Sbjct: 232 TRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSAEIERVE 291 Query: 414 ----------IEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAE 461 E +LS+ DII ++ + G+ DD DH NRR+RSVGE+ + Sbjct: 292 EILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRSVGELIQ 351 Query: 462 NQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 NQ ++GL R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFF +SQLSQFMDQNNPL Sbjct: 352 NQLKIGLSRLERLVRERMTTQDVEAITPQSLINIRPVVAAIKEFFSTSQLSQFMDQNNPL 411 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 S + HKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ YA+ Sbjct: 412 SGLAHKRRLSALGPGGLSRERAGFEVRDVHSSHYGRMCPIETPEGPNIGLIGALASYARL 471 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK-- 639 N YGF+ETPYR+V DG VTDE+ YL+A EE +YVIAQAN+ LD EG FVE V R Sbjct: 472 NRYGFIETPYRRVVDGKVTDEVVYLTADEEEDYVIAQANAKLDAEGRFVEPKVLVRRGPQ 531 Query: 640 ----------------GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 E L + D+VD MDVS QVVSV SLIPF+EHDDANRALMGA Sbjct: 532 GAVVRVGAMAVSYGATSEVELATPDEVDLMDVSPAQVVSVSTSLIPFVEHDDANRALMGA 591 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 NMQ+QAVP L + P VGTG+E +D+G VA+ GVV V + I + ++ Sbjct: 592 NMQKQAVPLLVPEAPFVGTGVEARAGLDAGDVLVAEGPGVVSEVTGASIAVTYDDSVTDD 651 Query: 744 GEAGIDI--YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + Y LTK+ RSNQNTC NQ P V+ G+ VE GDVLADGP+T GELALG+N+ Sbjct: 652 AGRPLGTRRYWLTKFQRSNQNTCWNQRPTVATGDRVELGDVLADGPATMHGELALGKNLL 711 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 VAFMPW GYNFED+I++SER+V++D +++HI+E +RDTKLG EEIT DIPN+ E A Sbjct: 712 VAFMPWEGYNFEDAIIISERLVRDDVLSSLHIEEFETDARDTKLGAEEITRDIPNLSEEA 771 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L+ LDE GIV IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEK+ +V+D+SLRVP Sbjct: 772 LADLDERGIVRIGAEVGPGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVP 831 Query: 922 NGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 +G G VIDV+VFTR D E E+ + + Q +K + G I +L Sbjct: 832 HGEYGKVIDVKVFTREDATELPPGVNELVRVYVAQHRKIQVGDKLAGRHGNKGVISRILP 891 Query: 981 AGGVEAEKLDKLPRDRWLE 999 + D P D L Sbjct: 892 IEDMP-RLEDGTPVDIILN 909 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 195/475 (41%), Positives = 277/475 (58%), Gaps = 28/475 (5%) Query: 871 VYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVSG 926 V G V GD+L G T GE L + LL A + + +D+ S R+ Sbjct: 681 VATGDRVELGDVLADGPATMHGELAL--GKNLLVAFMPWEGYNFEDAIIISERLVRDDVL 738 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE--ELQILEAGLFSRIRAVLVAGGV 984 + + ++ F D + A EI +++ L++ E I+ G +LV Sbjct: 739 SSLHIEEFETDARDTKLGAEEITRDIPNLSEEALADLDERGIVRIGAEVGPGDILVGKVT 798 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + + P +R L ++ ++ + L + E + K ++ K +L P Sbjct: 799 PKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGE----YGKVIDVKVFTREDATELPP 854 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV ++V+VY+A R+IQ GDK+AGRHGNKGVIS+I PIEDMP E+GTPVDI+LNPLGVP Sbjct: 855 GVNELVRVYVAQHRKIQVGDKLAGRHGNKGVISRILPIEDMPRLEDGTPVDIILNPLGVP 914 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRMNIGQ+LE HLG AA+ + I ++ ++ + D + + Sbjct: 915 SRMNIGQVLEAHLGYAARWGWEPIGEGAREHRKTRPV------TVPARWVASPAFDGAHW 968 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + E +++ + P ++ E L + G+ LY+GRTGE+++ P Sbjct: 969 DESEEAGDLPTIKELLERLNP------QSRDGERL----VQPDGKAVLYNGRTGERYDNP 1018 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 V VGY+YMLKL H+VDDK+HARSTG YS++TQQPLGGKAQFGGQRFGEMEVWALEAYGAA Sbjct: 1019 VMVGYVYMLKLAHMVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1078 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y LQE+LT+KSDDV GR K+Y+ IV G++ EPG+PESF VL+KE++SL +N+E+ Sbjct: 1079 YALQELLTIKSDDVVGRVKVYEAIVKGDNIPEPGIPESFKVLIKEMQSLCLNVEV 1133 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 106/388 (27%), Positives = 163/388 (42%), Gaps = 53/388 (13%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 + R F VL +P L+++Q DSF+ F+ GL AFR + PI+ YSG Sbjct: 5 HRPPERFSFASARNVLPLPDLIAVQRDSFRWFL------NEGLAEAFRDISPIEDYSGQL 58 Query: 67 ELQYVSYRLGEP------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 L+ Y +P F +EC+ + +TY+ P+ V+ R + + +IK+Q Sbjct: 59 ALEL-EYDPSDPDLAPVPKFSAEECREKDMTYAGPIFVRARFLNRQ-------TYEIKQQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 V+MG+ PLMTD GTF+INGTERV+VSQL RSPGV F + + + A I PYR Sbjct: 111 IVFMGDFPLMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQ-----HTVVTATINPYR 165 Query: 181 GSWLDFEFDPKD----NLFVRIDRRRKLPATIILRALNYTT----EQILDLF------FE 226 G WL+F+ + + N R+ R+R+L +LRA E+++ F + Sbjct: 166 GEWLEFDVEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWA 225 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKL 284 K + ME+ GE + + + + R R R + Sbjct: 226 KEDHSQTRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSA 285 Query: 285 IEVPVEYIAGKVVAKDYIDE---STGELICAANMEL---------SLDLLAKLSQSGHKR 332 VE I G + + S ++I A+ L D S + Sbjct: 286 EIERVEEILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRS 345 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRL 360 + L N L G E L + + Sbjct: 346 VGELIQNQLKIGLSRLERLVRERMTTQD 373 >UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Tax=Mycoplasma RepID=RPOB_MYCH2 Length = 1220 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 372/991 (37%), Positives = 547/991 (55%), Gaps = 89/991 (8%) Query: 1 MVYSYTEKK----RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV 56 M + Y K R+ +G + L+ P L +SF F+ G+ AF + Sbjct: 1 MNHIYKLKSYGIGTDRRFYGVANKTLETPDFLDPVRESFDWFL------HVGIPEAFDRI 54 Query: 57 FPIQSYSGNSELQYV--SYRLGEPVFD---VQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 FPI S +G E+ + S R+ +P + ++E +I+G TYSA + V L V E Sbjct: 55 FPIVSANGKLEISFRRGSLRVEKPENEYLAIREAKIKGKTYSARVYVTLVKVHSED---- 110 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +++EQE+ + E P MT GTF+ING E+V+VSQL RSPGV F + + + + Sbjct: 111 ---GEMEEQEILLAEFPFMTQGGTFIINGFEKVVVSQLIRSPGVCFR-ENVRNQQADDLF 166 Query: 172 YNARIIPYRGSWLDFEF----DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK 227 IIP GSW++ + D + RID+ + +P LRA+ +T E + F Sbjct: 167 NKVEIIPQLGSWMEIFHKVTGNQVDTVKFRIDKHKNIPLLSFLRAIGFTNETVRKYFGNS 226 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLI 285 + E +R E + V K RIT ++ L Sbjct: 227 ------------PELLESIRRHKLESLEENLELIYRIVRKDDRITEEGLKNL-------- 266 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL--DH 343 +P + Y STG + A L+L+ ++SQ+ N + Sbjct: 267 -IPSIIFNER----RYNLASTGRFMLNA----KLNLVERISQTYLAEDLVSKKNKILFKK 317 Query: 344 GPYISETLRVD---PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 G YI+ L ++ N+ L EI + R+ + ENL+ R+ ++ V Sbjct: 318 GTYITRQLALEIQEKFNNEEIPLSEIEGV--DSTIYARQLEITRNENLW---KRFYVAIV 372 Query: 401 GRMKFNRSLLRE----------EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN 450 +S+L+E L DII ++ ++ + G+ DD D L N Sbjct: 373 KVWPNKKSMLQESEPVNVIATDPNLNEKTLVLSDIIAIVSYYFNLLSNLGKSDDPDSLVN 432 Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSS 509 +RI SVGE+ +NQF + L ++E+ KE++S DL L + +IN KPI K FF SS Sbjct: 433 KRIVSVGELLQNQFLIALTKIEKNSKEKISTKSDLSQLTVKSIINNKPIYNQFKNFFNSS 492 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 +LSQFMDQ NPL E+ KR++++LGPGGL R+ A FEVRDVH THYGR+CP+ETPEG NI Sbjct: 493 KLSQFMDQINPLGEMASKRKVTSLGPGGLNRDTAQFEVRDVHTTHYGRICPVETPEGQNI 552 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 GLI + SV+++ N+YGF+ TPY +V + +V ++H+L+A EE + AQ+ +D+ Sbjct: 553 GLILNFSVFSRINQYGFIITPYYQVKNRIVDYSKVHWLAASEEFDKSFAQSGVEIDQNNR 612 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 + D +T R + +QV+Y+DVS+ Q+ S+ AS IPFLE++DANRALMG+NMQRQ Sbjct: 613 IIPDKLTVRKNQTYLVLDAEQVNYIDVSSMQMTSISASAIPFLENNDANRALMGSNMQRQ 672 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 AVP ++++ PLV TG+E AVA S A G V YVDA +I+I E Sbjct: 673 AVPLIKSEAPLVATGIEEAVARFSATNLRAAISGKVTYVDAKKIIIDDGE--------KP 724 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 +I+ L + +SNQ T I Q P V +G+ V++G ++ DGPSTD GELALG+N+ VAF W Sbjct: 725 EIHYLRYFEKSNQETLILQKPTVKVGDKVKKGQLICDGPSTDNGELALGKNVLVAFSTWY 784 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 GYN+ED+I++SE++V++D FT+IHIQE R TK G + +TA+IPN + LD + Sbjct: 785 GYNYEDAIIISEKLVKDDVFTSIHIQEQTIKFRSTKAGNDILTAEIPNASAKSRLHLDAN 844 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 GIV +G+EV GDILVG+ +PKGE T EEKL+ AI+G+KA KD+SLRV NG GTV Sbjct: 845 GIVIVGSEVDTGDILVGRTSPKGEDNPTAEEKLMAAIWGKKALAQKDTSLRVKNGEGGTV 904 Query: 929 IDVQVFTRD-GVEKDKRALEIEEMQLKQAKK 958 IDVQ+ +RD G ++ + ++ + Q +K Sbjct: 905 IDVQILSRDQGDNLEEGVGMLIKILIAQKRK 935 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 158/414 (38%), Positives = 210/414 (50%), Gaps = 58/414 (14%) Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 I Q + L E + + I+ G +LV + Sbjct: 809 IQEQTIKFRSTKAGNDILTAEIPNASAKSRLHLDANGIVIVGSEVDTGDILVGRTSPKGE 868 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + ++ + + + L + E + ++ ++ QGD+L GV Sbjct: 869 DNPTAEEKLMAAIWGKKALAQKDTSLRVKNGEGGTVIDVQILSR----DQGDNLEEGVGM 924 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 ++K+ +A KR+I+ GDKMAGRHGNKGV+S I P+EDMP+ E+GTPVDIVLNP GVPSRMN Sbjct: 925 LIKILIAQKRKIKVGDKMAGRHGNKGVVSVILPVEDMPFLEDGTPVDIVLNPQGVPSRMN 984 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 I G + L + K Sbjct: 985 I---------------GQVLELHLGMVAKKLK---------------------------- 1001 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 TPVFDG K IK+L ++P SG+ +L+DG +G+ FE PV+VG Sbjct: 1002 -----------TKFVTPVFDGIKIETIKKLFDEANIPESGKFKLFDGISGQAFENPVSVG 1050 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 YMYMLKL H+VDDKMHARS G YSL TQQPLGGK+Q GGQRFGEME WALE++GA L Sbjct: 1051 YMYMLKLLHMVDDKMHARSIGPYSLTTQQPLGGKSQNGGQRFGEMETWALESFGATSVLS 1110 Query: 1289 EMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 E+LT KSD++ GR +Y NI+ G PG PESFNVL E+R L I +E+ Sbjct: 1111 ELLTYKSDNIQGRNLLYNNIISGGKIPSPGTPESFNVLAYELRGLLIKLEVHKN 1164 >UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN5_FIBSS Length = 1429 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 367/795 (46%), Positives = 501/795 (63%), Gaps = 91/795 (11%) Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL---VTCRSKGESSL------ 644 V + +V+D I YL+A EE ++ +A A++ LDE F D+ V R K E Sbjct: 671 VVEQIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQDS 730 Query: 645 -----FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 +++D MDV+ Q+VSV A LIPFLEHDDANRALMG+NMQRQAVP LRA+ P+ Sbjct: 731 IAIGDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLLRAEAPV 790 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN--------------EDEMYPGE 745 VGTG+ER A+DSG AK G V +VDA I ++ E+ + G+ Sbjct: 791 VGTGLERRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLGK 850 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 ID Y L K+ RSNQ++CINQ P V++G+ VE GDVLADG STD GELALG+N+ + F+ Sbjct: 851 DPIDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVSTDHGELALGKNILIGFL 910 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PWNGYN+ED++++SE + +D FT+IHI+E RDTK GPEE+T +IPNVGE AL L Sbjct: 911 PWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDALRNL 970 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE+G++ +GAEV DILVGKVTPKGET+LTPEE+LLRAIFGEKA DV+DSSL+ P G+ Sbjct: 971 DENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAPPGMK 1030 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG-- 983 G V++ ++F+ + DK++ E ++ +++ +++ ++ ++ + +L Sbjct: 1031 GVVLETRIFS-KKDKADKKSKEKDQETIEEIRQNFQSQIDRIKDACREHLFDLLAGKSAG 1089 Query: 984 --------------------VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 +D + D++ Q+++ L + Sbjct: 1090 KVMDNETHELLIREGQTYNEQNLRLIDVTKVSPLSTFVVDDDDLQDKVLSLVLVARDNLD 1149 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + +E + K+T+GD+L PGVLK VKVY+A KR + GDKMAGRHGNKGV+S+I P+E Sbjct: 1150 TLTRTMEKEIDKVTKGDELKPGVLKSVKVYIAKKRCLSIGDKMAGRHGNKGVVSRIVPVE 1209 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ E+G P+ I+LNPLGVPSRMNIGQ+LE HLG AAK +G K+ + + + + Sbjct: 1210 DMPFTEDGRPLQILLNPLGVPSRMNIGQVLEVHLGWAAKTLGFKVTTPVFDGAKFEDICK 1269 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 +++AY V ++D + Sbjct: 1270 ELEKAYQKNPIVNYEMDPD----------------------------------------N 1289 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G+ +LYDG+TGE PVT+GYMY LKL HLVDDK+HARS GSY+LVTQQPLGGK+ Sbjct: 1290 NKIIGKAKLYDGKTGEALLNPVTIGYMYYLKLGHLVDDKIHARSIGSYALVTQQPLGGKS 1349 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 QFGGQRFGEMEVWA+EAYGAAYTLQE+LTVKSDDV GR+K+Y IV G + +PG+PESF Sbjct: 1350 QFGGQRFGEMEVWAMEAYGAAYTLQELLTVKSDDVQGRSKVYDAIVKGQNTPKPGIPESF 1409 Query: 1324 NVLLKEIRSLGINIE 1338 NV+++E+ SLG++IE Sbjct: 1410 NVMIREVHSLGLDIE 1424 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 239/657 (36%), Positives = 346/657 (52%), Gaps = 91/657 (13%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 RK + L++PYL+ +Q S+++F+++D GLE FR +FPI Sbjct: 5 RKSYSSNKFHLELPYLIEVQKASYEQFLQKDIPQEKRMNVGLERVFRDIFPITDDKDLYS 64 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+Y Y G P + + EC+ RG+TYS L L L ++E++ E +K+ + +V + ++ Sbjct: 65 LKYEGYYFGIPKYSIPECRERGLTYSMELFATLSLQVFEKDGEESKLKEEIKNDVLVCDL 124 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MT+NGTF+ING ERV+VSQLHRSPGV FD + +G+ Y +RIIP+RG+W++F Sbjct: 125 PIMTENGTFIINGAERVVVSQLHRSPGVSFDEE---MQPNGRSDYKSRIIPHRGAWVEFN 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPE-- 244 D L++ IDR++K+ AT +LR + + TT+ IL+LF++K + D+ + E Sbjct: 182 T-EGDILYLIIDRKKKIAATAMLRCIGFETTQDILNLFYKKTDEIVLDDAAFNDFDKEGV 240 Query: 245 -RLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 L D+ E G++ +E I + + +L + Sbjct: 241 CTLINRIIFNDVVDEETGEIILEANTVIDDKKLERLRES--------------------- 279 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 ++I L + + I TL D T R Sbjct: 280 ---------------------------SVEKITVL--SKEEDNLLIHYTLAADKTKSRED 310 Query: 362 ALVEIYRMM--RPGEPPTREAAESLFENLFFS-EDRYDLSAVGRMKFNRSLLREEIE--- 415 AL +Y + + E P + AE F+ LF + +YDL VGR + N + I Sbjct: 311 ALKAVYSVTHQQQEEAPNLQTAERYFDELFLNDPHKYDLGEVGRYRLNAKVYTAAILAKV 370 Query: 416 ------------------GSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRS 455 +SK D + +++ ++ + NG +DDIDHLGNRR RS Sbjct: 371 KEVAERFDRVNEFKMPSVTQMTMSKTDFLAIIEYMVGLFNGDEGYTLDDIDHLGNRRTRS 430 Query: 456 VGEMAENQFRVGLVRVERAVKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 VGE+ Q VGL R+ R ++E LSL + + P++++N + +S V+ FFG SQLSQF Sbjct: 431 VGELLAGQISVGLSRMSRVIRENLSLHSEEEQTTPRELVNTRMVSTVVQAFFGQSQLSQF 490 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 MDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINS Sbjct: 491 MDQMNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLINS 550 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE 631 L+ YA N +GF+ETPYR V D E + + + FVE Sbjct: 551 LASYAVVNHFGFIETPYRIVGLVEFKDAQGNKCYFPEEKWHFGIFKGFVHDPHLFVE 607 >UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax=Mycoplasma gallisepticum RepID=RPOB_MYCGA Length = 1390 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 345/1073 (32%), Positives = 555/1073 (51%), Gaps = 109/1073 (10%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K +R+D+ K + L IQ++++++F+E++ LE S FPI+S +G Sbjct: 14 PKVVRRDYSKVHNKYNPLNLPGIQVNAYKQFLEKE------LEEIIGSYFPIKSPNGKYS 67 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA---PEGTVKDIKEQEVYM 124 +++ ++ +P +E TY A L V L LV ++ K + +Y Sbjct: 68 VEFHGMKILDPQITKEEASAESKTYDASLYVNLSLVNHQTGTVKKISKKSAKSKAEGIYF 127 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKVL---YNARIIPYR 180 +IPLMT+NG F++NG E+ +V+Q+ RSPG + + + K +S K Y + P + Sbjct: 128 ADIPLMTENGAFIVNGIEKFVVAQIVRSPGAYILNKSQVKLSNSRKRNQEGYICEVFPSK 187 Query: 181 GSWLDFEFDPKDNLFVRIDR------RRKLPATIILRALNYTTEQILDLFFEKVIFEIR- 233 G+ + F + + R + T +L+A + +I ++F Sbjct: 188 GTLMLFYIAENKDFVQAVVRDVGGESAKVFSITTLLKAFGLSEIKIKEIFNNNDYILRSL 247 Query: 234 ------DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + ++ E +L + S I + +++ + +L ++ +L+ Sbjct: 248 ESEFYNEKQILNEADIAQLIRDIESDRISKVKSLPIDQKWKNLVLDWYKLNQEKQELLNS 307 Query: 288 PV---------------------EYIAGKVVAKDYIDESTGELICAANMELSLDLL---- 322 A K V ++ + + E+S + Sbjct: 308 SNPNPTKIESLNTHIGVVLRKLICEKAAKHVIQELSISTRSLDNVSQKEEISYQSILLQH 367 Query: 323 --AKLSQSGHKRIETLFTNDLDHGPYI-SETLRVD-----------PTNDRLSALVEIYR 368 K F L + T+ D L +++++ Sbjct: 368 FFQKKRYDLSSAGRHKFVRKLRVSERLYQRTIAQDIKDLDGNVVIKQGTLMLKEQLDLFK 427 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF--NRSLLREEI---------EGS 417 + + N + D++ ++ N L E E Sbjct: 428 RLSKEKRLDIIKQIDFI-NPELNTQFTDVNTYEEVQIYVNNDLRNETTQIIGIDGSNESI 486 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 L+ D+I ++ ++++ G DDIDHLGN+R++ + E+ +++ + G++R+E+ +K+ Sbjct: 487 ETLTLADLISIVSYIVNLPFNIGLYDDIDHLGNKRLKLINELLKSKVQTGMMRIEKYIKD 546 Query: 478 RLSLGDLDT----------------------LMPQDMINAKPISAAVKEFFGSSQLSQFM 515 +L D + L + +IN KP +K+FF + QL+QF+ Sbjct: 547 KLQTADGNNKLADQDAENDPDSDLGTKSSNDLTVKSVINPKPFQIVIKDFFNTHQLTQFL 606 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPLSE+T+KRRISA+GPGG++RE ++RDVH +HYGR+CPIETPEG NIGLI SL Sbjct: 607 DQQNPLSELTNKRRISAMGPGGISREDPNLDIRDVHYSHYGRICPIETPEGMNIGLIMSL 666 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD--EEGHFVEDL 633 + YA ++ GFL TPY KV +G +TD++ +L+A+ E Y+IA+A+S +D ++G + Sbjct: 667 AFYATIDKNGFLMTPYLKVENGKITDKVEHLTALREDEYIIAEASSYMDVAKDGTINNEK 726 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + R + L+ QVDY+DVS +QVVSV ASLIPFLE+DD++RALMGANMQRQA P L Sbjct: 727 IIARYRSSQDLYDPKQVDYIDVSPKQVVSVAASLIPFLENDDSSRALMGANMQRQATPLL 786 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 + PLVGTG+E +A DSG+ AK G V YVDAS+I +K +++ YNL Sbjct: 787 KPYSPLVGTGVEYKIAQDSGMLVTAKNPGTVTYVDASKITVKGEDNKSTD-------YNL 839 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 K+ +SN+NTC NQ P V++G+ +E LADGPS GELALGQN+ V F W+GYN+E Sbjct: 840 LKFVKSNKNTCYNQSPIVAVGDKIETNQALADGPSMKNGELALGQNVLVGFTTWSGYNYE 899 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 D++++S+R+ ++D +++IHI E TK G EEIT DIPN+ E+A LDE G++ + Sbjct: 900 DAVIISDRLFKDDVYSSIHIDEYTIECLRTKNGDEEITRDIPNISESAKRYLDEEGVIMV 959 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GAEV GDILVGK +PKG+ +LTPEEKL++AI G+K V++SSL+VPNG G V ++ Sbjct: 960 GAEVKEGDILVGKTSPKGQVELTPEEKLIQAILGDKVKQVRESSLKVPNGGDGIVAGIKR 1019 Query: 934 FT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 F+ +G E + LE+ ++ + Q +K + G I ++ + Sbjct: 1020 FSIANGDELEDDVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMP 1072 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 172/434 (39%), Positives = 245/434 (56%), Gaps = 27/434 (6%) Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 ID + + + + ++ K +E ++ G + +LV + Sbjct: 919 IDEYTIECLRTKNGDEEITRDIPNISESAKRYLDEEGVIMVGAEVKEGDILVGKTSPKGQ 978 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 ++ P ++ ++ L D+ KQ + L KR I GD+L VL+ Sbjct: 979 VELTPEEKLIQAILGDKVKQVRESSLKVPNGGDG----IVAGIKRFSIANGDELEDDVLE 1034 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 +VKVY+ KR+IQ GDK+AGRHGNKG+ISKI EDMP+ E+GTP+DI+LNPLGVPSRMN Sbjct: 1035 LVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPHLEDGTPLDILLNPLGVPSRMN 1094 Query: 1109 IGQILETHLGMAAKGIGD------------------KINAMLKQQQEVAKLREFIQRAYD 1150 IGQI E HLG AA+ + + Q + K ++ Sbjct: 1095 IGQIFELHLGYAARELAKAKLIEACFDKKLADQLDTVFGLEKSKTQSLIKNLVEHMKSIG 1154 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRK--GMPIATPVFDGAKEAEIKELLKLGDLPTS- 1207 + + + K + T + V++ IATPVF+G ++K ++ + Sbjct: 1155 VTSLAQTKNRVRTIDIDIVLKQLGLTYDDLAFKIATPVFEGVNMEDLKAIMSEAGIDPDK 1214 Query: 1208 --GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 G+ +L DGRTGE FE+P++VG MYMLKL+H+VDDK+HAR+ G YS +TQQPLGGK+Q Sbjct: 1215 TEGKFKLIDGRTGEPFEKPISVGIMYMLKLDHMVDDKIHARAVGPYSKITQQPLGGKSQN 1274 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 GGQRFGEMEVWAL+AYGAA+ L+E+LT+KSDDV GR Y IV G EPG+PESF + Sbjct: 1275 GGQRFGEMEVWALQAYGAAHNLREILTIKSDDVRGRNMTYNAIVKGLSIPEPGVPESFKL 1334 Query: 1326 LLKEIRSLGINIEL 1339 L KE++ LG+ + + Sbjct: 1335 LTKELQGLGMTLNV 1348 >UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Tax=Embryophyta RepID=RPOB_GNEPA Length = 1108 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 363/1175 (30%), Positives = 562/1175 (47%), Gaps = 150/1175 (12%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 ++F FD + + + K + L ++++ + FF + + + +P Sbjct: 48 VEFLFDKNYKI-IEPSIKEKDAVY---QRLTFSSKLFVPAFFIYWNKIKKKKIIYLGEIP 103 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 L +F I N +V V + R + K + + G + + Sbjct: 104 --LMNNNGTFLINGNYRVVVNQLIRSPGIYYSLERKRTGNIYTSTLISDCGGRLKFEIDI 161 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRI--ETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + + +S+ + + I T + + I + + Sbjct: 162 KQNIWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLKHKLSRKKG 221 Query: 362 ALVEIYRMM----RPGEPPTREAAESLFENLF--FSEDRYDLSAVGRMKFNRSLLREEIE 415 A+ Y + + E+ F F R L +GR N+ L E + Sbjct: 222 AIFTFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNLNKKLNLEIPD 281 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 L D++ ++ LI + G G VD+IDHL NRR SV ++ + + + L RV+ + Sbjct: 282 NEIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVLI 341 Query: 476 KERLSL-------GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 ++ + + ++P+ + + I+ +K FFG LSQF++Q N L+EI H R Sbjct: 342 QKTMQTIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLHPLSQFLEQTNSLAEILHAR 401 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 ++S LGPGGLT A F RD+HP++YGR CPI TPEG N GLI SL++ A+ N +GFLE Sbjct: 402 KVSFLGPGGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISARIN-FGFLE 460 Query: 589 TPYRKVTDG-VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV-TCRSKGESSLFS 646 +P+ V +I YLS E+ Y IA N L + E + E + Sbjct: 461 SPFYNVAKKYQKAKKIVYLSPSEDVYYRIALGNC-LSVDQKIPEKKNTPTQYHQEFLSIA 519 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 +Q+ + Q S+G SLIPFLEH+DA RALMG+NMQRQAVP+++ +K +VGTG+E Sbjct: 520 WEQIHFRCFLPLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEG 579 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 VA+DSG A++ + G +QY DA+ IV + L Y RSN NT ++ Sbjct: 580 QVALDSGALAISTQEGRIQYSDAATIV--------SVLKGNTTQTELQIYQRSNSNTLMH 631 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q S + V +G +LADG + GE+ LG+N+ VA+MPW GYNFED+IL+SE ++ +D Sbjct: 632 QKTHASQAKYVRKGQILADGAAMLGGEICLGKNILVAYMPWQGYNFEDAILISECLIYKD 691 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 FT+ HI + E++T +IP + +L LD++G+V +G+ V GD+LVGK Sbjct: 692 IFTSFHITRYETTICTAE--CEKMTREIPRLATYSLRHLDKNGLVRVGSWVQPGDVLVGK 749 Query: 887 VTPKGETQLT--PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 + P+ + PE +LL+ +F S +K++ LR G VIDV KD Sbjct: 750 LRPRSSEDFSRFPELRLLQDLFC--TSPIKETCLRA--NGKGRVIDVNWSKLQAFCKD-- 803 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 ++E+ +D+ +E Sbjct: 804 --DLEKGHQDDDTEDIYDE----------------------------------------A 821 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 E+ ++ QL E ++RKI GD Sbjct: 822 EDALEKVYQLNNYNLSSDSEKVHVYLLEKRKIQVGD------------------------ 857 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K+AGRHGNKG++S + +DMP+ ++G +D+VLNPL VPSRMN+GQI E LG+A Sbjct: 858 KVAGRHGNKGIVSIVLSRQDMPFLQSGISLDMVLNPLSVPSRMNVGQIFECLLGLAG--- 914 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 + + + E ++ + E + A Sbjct: 915 ------TMNKHYRIPPFDERYEQ-----------------EASRKLVFYELYKASEQTAN 951 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 P + +L G+ +++DGRTGE FE+PVT G Y+LKL H V+DKMH Sbjct: 952 P--------------WIFELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKLIHQVNDKMH 997 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARSTG+Y+ +TQQP+ GK++ GGQR GEMEVWALE++G AY L+EMLTVK+D + R K+ Sbjct: 998 ARSTGNYARITQQPVQGKSKGGGQRLGEMEVWALESFGVAYVLREMLTVKADHIRARKKI 1057 Query: 1305 YKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINIE 1338 ++I+DG+ + ESF VL KE+ SL + + Sbjct: 1058 LRSILDGHSVPKADSATESFRVLSKELNSLALELN 1092 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 84/380 (22%), Positives = 163/380 (42%), Gaps = 31/380 (8%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY-VSY 73 F ++ ++ +P IQL+ F +FIE D L F I + E + +Y Sbjct: 3 FDEKKEMFTIPEFGQIQLEGFCRFIEYD------LLDKFVKFPKIANTQKEVEFLFDKNY 56 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 ++ EP ++ + +T+S+ L V + + + + + Y+GEIPLM +N Sbjct: 57 KIIEPSIKEKDAVYQRLTFSSKLFVPAFFIYWNKIKKKKII--------YLGEIPLMNNN 108 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GTF+ING RV+V+QL RSPG+++ ++ +T + +Y + +I G L FE D K N Sbjct: 109 GTFLINGNYRVVVNQLIRSPGIYYSLERKRTGN----IYTSTLISDCGGRLKFEIDIKQN 164 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE----IRDNKLQMELVPER---- 245 +++RI R++ + + A+ E+IL + FE I + KL+ +L ++ Sbjct: 165 IWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLKHKLSRKKGAIF 224 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 E + N V+ E + KL + + K+ + Sbjct: 225 TFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNLNKKL---NLEIPD 281 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 + ++ +D L K+S G ++ + +++ L+ + V Sbjct: 282 NEIFLLPQDVLAIIDYLIKVSY-GVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVL 340 Query: 366 IYRMMRPGEPPTREAAESLF 385 I + M+ E ++ + + Sbjct: 341 IQKTMQTIEMLRKKQNKRIM 360 >UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax=Mycoplasma penetrans RepID=RPOB_MYCPE Length = 1375 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 367/1029 (35%), Positives = 560/1029 (54%), Gaps = 94/1029 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K +R+D+ K + + P LL++Q ++F KFI+ + LE +S+FPI+S G Sbjct: 13 KYVLRRDYSKIEKNFNEPNLLNLQKNAFHKFIDTE------LEGTIKSIFPIKSIGGRYS 66 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE-----QEV 122 L+Y+ +L +P +E + G TY PL V L +V E + T K K + Sbjct: 67 LEYIGMKLEKPKRSEKEARNEGKTYDRPLYVDLAIVDNESGEVKKTTKSSKNKASNTDGI 126 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKVL---YNARIIP 178 + IP++T+ GTF++NG E+ ++SQ+ RSPG + + K +S K + Y I+P Sbjct: 127 FFASIPMITEKGTFIVNGIEKFVISQIVRSPGAYILTKSQIKLSNSRKRIQEGYICEILP 186 Query: 179 YRGSWLDFEFDPKDNLFVRIDRR-------RKLPATIILRALNYTTEQILDLFFEKVIF- 230 +G+ L F F ++ F+++ R +P T L+AL E+IL++F Sbjct: 187 AKGT-LFFIFMAENKDFIQVMFRDAIGESTHTIPITAFLKALGLNKEEILNIFANHKSIK 245 Query: 231 -----EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 EI + K E + + K R + ++ + + + Sbjct: 246 NSLDNEIYNEKDVFETDELINLRKNLNSSDSNRSYGVDTKLRELFKKYSSLKSQLEAEGK 305 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + +V+ +++ +L+ ++ + +++ N Sbjct: 306 NAEKQKELNEVINNIISEKAAKDLVINLSISTKNIDSKFRLSNKETTYQSIIYNHFFSNK 365 Query: 346 YIS-------ETLRVDPTNDRL------SALVEIYRM-------------MRPGEPPTRE 379 + R ++RL L +I + + T+E Sbjct: 366 SFDLSKAGRFKMARKMRLSERLYQRVLAEDLKDINGKVVIKKNTLIQKHELDTIKQLTKE 425 Query: 380 AAESLFENLFFSEDRYDLSAVGRM-KFN------------RSLLREEIEGSGILSKDDII 426 + N+ E ++ V + K N + + LS DI+ Sbjct: 426 GKLGIVHNVNLDERISKMANVVKYEKINVYQDNDSQDEFIPIIGTDTSLDKPTLSISDIL 485 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD--- 483 + +I++ G DDIDHLGN+R++ + E+ + + + GLVR+E+ + ++L++ D Sbjct: 486 SITSYVINLDYDIGFYDDIDHLGNKRLKLIDELLKTRAQAGLVRIEKFINDKLAIADGAN 545 Query: 484 -----------LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 +L + +IN KP + KEFF S QL+QF+DQ NPL+E+T+KRRISA Sbjct: 546 KSQEQSEEQEPKKSLTVKSIINTKPFQISFKEFFNSHQLTQFLDQQNPLAELTNKRRISA 605 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 +GPGG++RE ++RDVH +HYG++CPIETPEG NIGLI SL+ YA T+E GFL TPYR Sbjct: 606 MGPGGISREDPNLDIRDVHYSHYGKICPIETPEGMNIGLIMSLATYASTDENGFLITPYR 665 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 V +GV+TDEI +L+A+ E Y+IA +N N+++ F ED V CR + F VD+ Sbjct: 666 IVKNGVITDEIRWLTALSEDEYIIACSNLNVEKN-KFKEDKVLCRYRSSWEFFDVKDVDF 724 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 +D+S +QVVS+ AS IPFLE+DDANRALMGANMQRQA P + P+VGTG E +A DS Sbjct: 725 IDISPKQVVSIAASSIPFLENDDANRALMGANMQRQATPLISPIAPIVGTGNEYKIAHDS 784 Query: 713 GVTAV--AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 G+ AV ++ G V YVD I IK +E +Y LTK+ +SNQNTC NQ+P Sbjct: 785 GMAAVYDGEKDGTVSYVDGGTIKIKSGSEE--------KVYELTKFNKSNQNTCNNQVPI 836 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 VS+GE V +G +ADGP+ GELALGQN+ VAF W+GYN+ED+I++S+R+ ED FT+ Sbjct: 837 VSVGEKVTKGTTIADGPAMSNGELALGQNVLVAFTTWSGYNYEDAIILSKRLFMEDIFTS 896 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 IHI E + TK G EEIT DIPNV E++ LD+ GI+ +GAEV GD+LVGK++PK Sbjct: 897 IHIVEYSVDCLKTKNGDEEITRDIPNVSESSKKYLDDEGIIMVGAEVKEGDVLVGKISPK 956 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALEIE 949 G+ +LT EEKLL+AIFG+K+ + K++SL+VP+G GTV V+ F D E + +E Sbjct: 957 GQVELTSEEKLLQAIFGDKSKNHKETSLKVPHGGEGTVAMVKRFKVEDDYELNADVIEQI 1016 Query: 950 EMQLKQAKK 958 ++ + Q +K Sbjct: 1017 KVYVVQKRK 1025 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 165/420 (39%), Positives = 237/420 (56%), Gaps = 33/420 (7%) Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + ++ K ++ I+ G + VLV +++ ++ L+ D+ K ++ Sbjct: 922 NVSESSKKYLDDEGIIMVGAEVKEGDVLVGKISPKGQVELTSEEKLLQAIFGDKSKNHKE 981 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 L + KR K+ +L V++ +KVY+ KR+IQ GDKMAGRHG Sbjct: 982 TSLKVPHGGEG----TVAMVKRFKVEDDYELNADVIEQIKVYVVQKRKIQIGDKMAGRHG 1037 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK---- 1127 NKG+ISKI P+EDMP+ E+GT +DI+LNPLGVPSRMNIGQILE HLG+A K + Sbjct: 1038 NKGIISKIVPVEDMPHLEDGTTIDIMLNPLGVPSRMNIGQILELHLGLAMKKLTLSKVLE 1097 Query: 1128 --------------INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 + + + K E I + + + + + F + + Sbjct: 1098 LYYDKKPASDFSLWFGIHEEASRNLIKNLEKILNEKQIKSLDQANKEFTDFDLSLALSRS 1157 Query: 1174 ENLRKGMPI--ATPVFDGAKEAEIKELLKLGDLP---------TSGQIRLYDGRTGEQFE 1222 R+ + ATPVF+G ++KE + + SG+ L DGRTGE F+ Sbjct: 1158 GISREKLIYKTATPVFEGVNRTDLKEAMTEAGIDPINGKLGEGKSGKFNLIDGRTGEYFD 1217 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 V+VG MYMLKL+H+VDDK+H+R+ G YS +TQQPLGGK+Q GGQRFGEMEVWALEAYG Sbjct: 1218 GEVSVGIMYMLKLDHMVDDKIHSRAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYG 1277 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 AA+ L+E+LT+KSDDV GR Y I+ G E G+PESF +L K+++ LG+ + + E Sbjct: 1278 AAHNLRELLTIKSDDVKGRNNTYNAIIKGKPIPESGLPESFKLLTKQLQGLGLQVSITKE 1337 >UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 Tax=Bacteria RepID=RPOB_BIFLD Length = 1187 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 339/735 (46%), Positives = 468/735 (63%), Gaps = 27/735 (3%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P L+ +F I +V V + R + + + Sbjct: 135 FENGDTGEIKSQTVFMGDFP--LQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDRTSD 192 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + L G + E Sbjct: 193 KEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEI--AQAFKD 250 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 P + + L + + ALV++YR +RP + PT EA ++L ++ +F+ RYDL+ VGR Sbjct: 251 YPLVLDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRY 310 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID---------------HL 448 K NR L E L ++DII +K L+ + +G H Sbjct: 311 KINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDLRVDVDDIDHF 370 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 GNRRIR VGE+ +NQ R GL R+ER V+ER++ D + + PQ +IN +P++A +KEFFG+ Sbjct: 371 GNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVNATIKEFFGT 430 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQLSQFMDQNNPLS +T+KRR+SALGPGGL+R+RA EVRDVHP+H+GR+CPIE+PEGPN Sbjct: 431 SQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMCPIESPEGPN 490 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 IGLI SL+ + + N +GF+ETPYRKV +G VTDE+ Y++A + ++VIAQAN LDE G+ Sbjct: 491 IGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQANQELDENGN 550 Query: 629 FVEDLVTCRSKGESSL-FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 FV+ R E ++ VDYMDVS +Q+VS+GASLIPFLEHD+ +RALMG NMQR Sbjct: 551 FVQKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGHRALMGTNMQR 610 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 QAVP + +++PLVGTG E A DSG +++ GVV YV A I + ++ Sbjct: 611 QAVPLIESERPLVGTGSEWRAANDSGDVIKSEKDGVVTYVSADLIRVMNDDGTTSS---- 666 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 Y L K+ RSNQ TC NQ P V GE VE G V+ADGP+ G+LALG+N+ +AFMPW Sbjct: 667 ---YKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVMADGPAIQNGDLALGKNLLIAFMPW 723 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 NGYN+ED++++S+R+VQ+D ++IHI+E +R+TKLG EEIT D+PNVGE A++ LDE Sbjct: 724 NGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANLDE 783 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 GI+ IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEK+ +V+D+SLRVP+G +GT Sbjct: 784 RGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGT 843 Query: 928 VIDVQVFTRDGVEKD 942 VI V+ TR+ E+D Sbjct: 844 VIGVKEITREDAEED 858 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 190/491 (38%), Positives = 268/491 (54%), Gaps = 54/491 (10%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV+ G V G ++ G G+ L + LL A + +D+ + +S + Sbjct: 686 IVHDGERVEAGSVMADGPAIQNGDLAL--GKNLLIAFMPWNGYNYEDAVI-----ISQRL 738 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + + +E+ + ++ ++ +DL +E I+ G + Sbjct: 739 VQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANLDERGIIRIGAEVEAGDI 798 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + + P +R L ++ ++ + L + E K + Sbjct: 799 LVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGTVIGVKEITREDAEED 858 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L GV ++++VY+A R+I GDK++GRHGNKG IS+I P EDMP+ +GTPVDI+L Sbjct: 859 GDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRILPEEDMPFLADGTPVDIML 918 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN+GQ+LE HLG A G D+ Sbjct: 919 NPLGVPSRMNLGQVLELHLGWIAHS----------------------------GWDISLD 950 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG--------QI 1210 +L + + AE P+ATPVFDG K +K LL G + Sbjct: 951 PNLEAEWKKLIPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKA 1010 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 L+DGRTGE + +P++VGYMYMLKL+HLVDDK+HARSTG YS++TQQPLGGKAQFGGQRF Sbjct: 1011 TLFDGRTGEPYTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRF 1070 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEMEVWALEAYGAAYTL EM+T KSDDV+GR ++Y IV G++ G+PESF VLLKE+ Sbjct: 1071 GEMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEM 1130 Query: 1331 RSLGINIELED 1341 +SL +N+E+ + Sbjct: 1131 QSLSLNVEVLN 1141 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 151/311 (48%), Gaps = 35/311 (11%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI---------EQDPEG-------QYGLE 50 K R +FG + +DVPYLL +Q DSF I E+D + GL+ Sbjct: 24 HKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNERWKARVEEDEKNGTNTVAHTSGLD 83 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAP 110 F + PI++++ L + EP VQEC+ + TYSAPL V E Sbjct: 84 EVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEKDYTYSAPLYVNA-------EFE 136 Query: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 G +IK Q V+MG+ PL T +GTF+I GTERVIVSQL RSPGV+FD + +T S K Sbjct: 137 NGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDRT--SDKE 194 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF--FEKV 228 ++ A+IIP RG+WL+FE D KD VR+DR+RK A + L A+ T +I F + V Sbjct: 195 VFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEIAQAFKDYPLV 254 Query: 229 IFEIRDNKL------QMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKD 280 + + L ++L + +T + + N Y R AR R Sbjct: 255 LDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRYKINR 314 Query: 281 DVKLIEVPVEY 291 + + + Sbjct: 315 KLGVEADFNDR 325 >UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax=Cyanidioschyzon merolae RepID=RPOB_CYAME Length = 1036 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 321/703 (45%), Positives = 431/703 (61%), Gaps = 17/703 (2%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L E A+F I +V V + R + + L ++A + Y + Sbjct: 95 LMTEDATFIINGAERVVVNQIVRSPGVYFQALWDKQHVRT-FEATFMANRGAWIKYELDK 153 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 L + + L+ L G E L + + N+ +ALVE Sbjct: 154 QKLLWVRLDKNRKMPLVIFLQALGLNLQEI--KPHLTNREVFERSWENHAVNNTEAALVE 211 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 Y+ MRPGEP T +A+ L FF +YDLS VGR K N+ L + IL+ D+ Sbjct: 212 FYKKMRPGEPATVHSAKQLLYARFFDPKKYDLSEVGRYKLNQKLHLDIPLSVHILTTSDL 271 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 + + LI + + VDDIDHL NRR++ VGE+ +NQ R+GL R+E+ ++E++++G+ Sbjct: 272 LAGLDYLIQLCLDRARVDDIDHLANRRLKCVGELLQNQVRIGLSRLEKLLREKMTIGE-- 329 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 L P ++N KP+++A++EFF SSQLSQFMDQ NPL+E+THKRRISALG GGLTRERAGF Sbjct: 330 KLQPSSLLNPKPLTSAIREFFASSQLSQFMDQINPLAELTHKRRISALGAGGLTRERAGF 389 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 VRD+HP+HYGR+CPIETPEGPN GLI SL+++A+ N YGF+ETPY V G V I Y Sbjct: 390 AVRDIHPSHYGRICPIETPEGPNAGLIGSLAIFARVNRYGFIETPYYPVKKGQVQKSIVY 449 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 L+A E NY +A A+ D EG +V R + E + VDYM +S Q +S Sbjct: 450 LTADVEDNYRLAPADVKYDREGQICSPIVAVRYRQEWTTCDASHVDYMAISPIQFISAAT 509 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 LIPFLEHDDANRALMG+NMQRQAVP +RA KP V TG E+ + +K G+V+ Sbjct: 510 CLIPFLEHDDANRALMGSNMQRQAVPLIRASKPYVSTGQEKWMVQ----GVFSKADGIVR 565 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 V A+ I I+ G Y L KY +SNQ+TCI+ P V +GE V +G ++A Sbjct: 566 SVQATSIRIQH--------ARGPVDYALLKYQKSNQDTCIDYRPLVWVGEHVVKGQLIAQ 617 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 + D GELALGQN+ +A+MPW GYNFED+ ++SER+V ED +T+IHI++ +R TKL Sbjct: 618 SAAMDSGELALGQNVLIAYMPWEGYNFEDAFVISERLVYEDVYTSIHIEKYETDARQTKL 677 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 G E+IT IPNVGE AL +LDE GI+ +G+ V G ILVGK+TPKGE+ PE KLLRAI Sbjct: 678 GAEQITRQIPNVGEHALRQLDEHGIISVGSWVEAGSILVGKITPKGESDQPPEGKLLRAI 737 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 FGEK VKDSSLR+PNG G VI V++ +RD ++ + I Sbjct: 738 FGEKNQHVKDSSLRMPNGSRGRVIHVRILSRDQGDELPAGVNI 780 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 161/413 (38%), Positives = 220/413 (53%), Gaps = 57/413 (13%) Query: 929 IDVQVFTRDGVEKDKRALEIEEM--QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 I ++ + D + A +I + + +E I+ G + ++LV Sbjct: 663 IHIEKYETDARQTKLGAEQITRQIPNVGEHALRQLDEHGIISVGSWVEAGSILVGKITPK 722 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + D+ P + L ++ + + L ++ ++ QGD+L GV Sbjct: 723 GESDQPPEGKLLRAIFGEKNQHVKDSSLRMPNGSRGRVIHVRILSR----DQGDELPAGV 778 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 V+V +AVKR IQ GDKMAGRHGNKG++++I P DMPY +GTPVD++LNPLGVPSR Sbjct: 779 NISVRVSVAVKRVIQVGDKMAGRHGNKGIVARILPRCDMPYLPDGTPVDVILNPLGVPSR 838 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQ+ E LG+AA + +I Sbjct: 839 MNVGQLFEALLGLAAHRLRKRI-------------------------------------- 860 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 K +P A + + LK L Q LYDGR+GE+F+ VT Sbjct: 861 -----------KIVPFDEMYHKEASRIFVHQQLKRAALSA--QTILYDGRSGEKFDNAVT 907 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG YMLKL HLVD+K+HARSTG YSLVTQQPLGG+AQ GGQR GEMEVWALEAYGAAYT Sbjct: 908 VGMAYMLKLVHLVDEKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAYGAAYT 967 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 LQE+LT+KSDD+ GRT IV G PESF VL++E+++LG+++ + Sbjct: 968 LQELLTLKSDDMEGRTATLNAIVKAQPIPRGGTPESFKVLMRELQALGLDVTV 1020 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 159/381 (41%), Gaps = 42/381 (11%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFDVQ 83 L+++Q +S+ F+ + L+ F + PI Y+G EL + L P Sbjct: 3 DLIAVQRNSYYTFLTKS------LKEEFDKISPIVDYTGQLELHLITSKMELKPPKITPV 56 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTER 143 + + + +TYS + + ++L ++ D+++Q +Y GEIPLMT++ TF+ING ER Sbjct: 57 QAKRQDITYSVGMYMPVQLWNHQ-------TGDVRQQMIYFGEIPLMTEDATFIINGAER 109 Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK 203 V+V+Q+ RSPGV+F + K H + A + RG+W+ +E D + L+VR+D+ RK Sbjct: 110 VVVNQIVRSPGVYFQALWDKQHV---RTFEATFMANRGAWIKYELDKQKLLWVRLDKNRK 166 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIR--------DNKLQMELVPERLRGETASFDI 255 +P I L+AL ++I + +FE +E + GE A+ Sbjct: 167 MPLVIFLQALGLNLQEIKPHLTNREVFERSWENHAVNNTEAALVEFYKKMRPGEPATVHS 226 Query: 256 EAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + K ++ +L + I + V + + LI Sbjct: 227 AKQLLYARFFDPKKYDLSEVGRYKLNQKLHLDIPLSVHILTTSDLL-----AGLDYLIQL 281 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 +D + L+ K + L N + G E L + + I ++P Sbjct: 282 CLDRARVDDIDHLANRRLKCVGELLQNQVRIGLSRLEKLLREK--------MTIGEKLQP 333 Query: 373 GEPPTREAAESLFENLFFSED 393 + S F S Sbjct: 334 SSLLNPKPLTSAIREFFASSQ 354 >UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Tax=Bacteria RepID=RPOB_DEHSB Length = 1273 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 367/849 (43%), Positives = 505/849 (59%), Gaps = 94/849 (11%) Query: 181 GSWLDFEFDPKDNLFVRI--------DRRRKLPATIILRALNYTTEQI---LDLFFEKVI 229 G+ L+ EF + R+ D+ +P + R + TT +I DLFF + Sbjct: 62 GNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIKEPFDLFFGDIP 121 Query: 230 FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 L +F +V V + R + + Sbjct: 122 ----------------LMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHT 165 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR-IETLFTNDLDHGP--- 345 I + ++ + + + + + L G+ ++ L ++ Sbjct: 166 NLIPSRGAWLEFETSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPER 225 Query: 346 -YISETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 YI ++ DP D +SAL++IY +RPG+PP + A L +FF YDL VGR Sbjct: 226 HYIQSSIDRDPLIKDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRY 285 Query: 404 KFNRSLLRE--EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE 461 K NR L E+ + L+++DI+ +++++I + NG+ DDIDHLGNRRIR+VGE+ + Sbjct: 286 KVNRRLELPSREVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQ 345 Query: 462 NQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 NQFR+GLVR+ER +ER+S+ +L+ + P ++N +P+ +AVKEFFG SQLSQFMDQ NPL Sbjct: 346 NQFRIGLVRLERVARERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPL 405 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 +EIT+KRR+SA+GPGGL+RERAGF+VRDVH +HYGR+CPIETPEGPNIGLI SL+ Y++ Sbjct: 406 AEITNKRRLSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRI 465 Query: 582 NEYGFLETPYRKVTDGV------------------------------------------- 598 N YGF+ETPYRKV + Sbjct: 466 NRYGFVETPYRKVYSKLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISEDSFKIISKLPE 525 Query: 599 --------VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 V+ E+ Y+ A EE Y+IAQAN+ LDE+G+F++D + RS + D++ Sbjct: 526 CDISVMPFVSAEVKYMPADEEDRYIIAQANTRLDEKGYFLDDRIEARSAERYVVEPPDKI 585 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 DYMDVS +Q+ SV ASLIPFLEHDDANRALMGANMQRQAVP LRA+ P+V TGMER A Sbjct: 586 DYMDVSPKQIFSVAASLIPFLEHDDANRALMGANMQRQAVPLLRAEAPMVATGMEREAAR 645 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 SG AK GV V + +I+I+ E G D Y L K+ R+NQ TCINQ Sbjct: 646 YSGQVIFAKHAGVASSVTSEKIIIRT-------AEGGHDEYLLKKFVRTNQGTCINQHAI 698 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 ++ G+ + G VLAD +T+ GELALGQN VAFM W G+N+ED+I++SER+V+ED FT+ Sbjct: 699 INKGQKIAAGQVLADSSATENGELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTS 758 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 IHI + +RDTKLG EEIT DIPNVGE +L +LDE GI+ IGAEV DILVGK+TPK Sbjct: 759 IHITKHELEARDTKLGVEEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPK 818 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIE 949 GET+L+ EEKLLRAIFGEKA +VKD+SLR+P+G G VI+V++F+RD G + R + Sbjct: 819 GETELSAEEKLLRAIFGEKAREVKDTSLRMPHGEWGKVINVRIFSRDSGDDLPARVNKWV 878 Query: 950 EMQLKQAKK 958 ++ + Q +K Sbjct: 879 QVWVAQKRK 887 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 191/520 (36%), Positives = 280/520 (53%), Gaps = 63/520 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 I+ G ++ G +L T GE L + + A + + +D+ + +S + Sbjct: 698 IINKGQKIAAGQVLADSSATENGELAL--GQNCVVAFMSWQGFNYEDAII-----LSERL 750 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL----SEELQILEAGLFSRIR------AV 978 + FT + K + ++ +++ +D+ E L+ L+ RI + Sbjct: 751 VREDAFTSIHITKHELEARDTKLGVEEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDI 810 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + + ++ L ++ ++ + L + E K + + Sbjct: 811 LVGKITPKGETELSAEEKLLRAIFGEKAREVKDTSLRMPHGEWG----KVINVRIFSRDS 866 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GDDL V K V+V++A KR++ GDK+AGRHGNKGVIS I P+EDMPY +GTPVD+VL Sbjct: 867 GDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVL 926 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP+GVPSRMN+GQILETHLG A +G ++ + + + + + R++ + K Sbjct: 927 NPIGVPSRMNLGQILETHLGWAGHLLGFRVATPVFDGADDTVIEDALARSW-----LSAK 981 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDG-----------AKEAEIKELLKLGDLPTS 1207 S E A+ + I FDG AKE +K LK + S Sbjct: 982 AGAIDMSPENKRPSADAHKAIEWIKQQGFDGKKIFDEKHPGLAKEVSLKLWLKDMGVDAS 1041 Query: 1208 -------------------------GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 G+ L DGRTGE F++PVTVG MY+LKL HLV+DK Sbjct: 1042 ALSGAELEKKAYDVSSQSRLPSPIVGKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDK 1101 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302 +HAR+TG YSL++QQPLGGKAQFGGQRFGEMEVWA+ AYG A+ LQEMLT+KSDD+ GR Sbjct: 1102 VHARATGPYSLISQQPLGGKAQFGGQRFGEMEVWAMYAYGTAHNLQEMLTIKSDDIAGRA 1161 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K Y++IV G ++PG+PESF VL+KE++SLG+ +E+ +E Sbjct: 1162 KAYESIVKGEDVLQPGVPESFKVLVKELQSLGLAVEVINE 1201 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 169/354 (47%), Gaps = 37/354 (10%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN-SELQ 69 IRK + + P+V++VP L+ +QL SF F E+ GL + PI+ + GN EL+ Sbjct: 15 IRKSYAQLPEVVNVPNLIEMQLQSFVWFQEE------GLRELIEEISPIKDFVGNRLELE 68 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ-EVYMGEIP 128 ++ Y EP EC R TYS PL VK RL++ T +IKE +++ G+IP Sbjct: 69 FIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIV-------KTTGEIKEPFDLFFGDIP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 LMT GTF+ +GTERV+VSQL RSPGV+F ++G+ L + +IP RG+WL+FE Sbjct: 122 LMTALGTFITSGTERVVVSQLLRSPGVYFTISDDP--ATGRPLCHTNLIPSRGAWLEFET 179 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLF---------------FEKVIFEI 232 +D + V+ID RRK+P + +LRA+ Y+ + IL+LF ++ Sbjct: 180 SNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLIK 239 Query: 233 RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 + +++ G+ + D +++ + + R ++L V Sbjct: 240 DEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPSREVG 299 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + +D + ++ + + D + L + + L N G Sbjct: 300 E-NRALTREDIVAIIQRIIMVNNGQD-TPDDIDHLGNRRIRTVGELVQNQFRIG 351 >UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Tax=Mycoplasmataceae RepID=RPOB_UREP2 Length = 1434 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 355/1086 (32%), Positives = 554/1086 (51%), Gaps = 146/1086 (13%) Query: 4 SYTEK----KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI 59 +YTEK K +R+D+ K + P LL IQ++SF++F+E+D L+ S+FP+ Sbjct: 6 NYTEKFITDKVMRRDYSKIKSNFEGPNLLEIQVESFKRFMEKD------LKEVISSIFPL 59 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK- 118 +S G L + ++ +P D C+ G T+ P+ + L L + ++ K Sbjct: 60 KSPQGKYTLAFKGLKIKQPTKDESACRDEGKTFETPIYIDLELTDNYTGEVKRAQRNTKT 119 Query: 119 -EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVLYNARI 176 E +Y+G IP MT+ GTFVING E+ ++SQ+ RSPG++ K + S K L+ +I Sbjct: 120 GEDGIYLGAIPKMTEKGTFVINGIEKFVISQIVRSPGIYVLGKSSIKLNGSRKRLFEGKI 179 Query: 177 I---PYRGSWLDFEFDPKDNLFVRI-------DRRRKLPATIILRALNYTTEQILDLFF- 225 P +G+ L + PKD ++I D + T +L+A T+ +IL +F Sbjct: 180 CEIYPSKGT-LMLGYIPKDRHNIQIVARDSSGDNAQTFSVTTLLKAFGLTSAEILKIFNN 238 Query: 226 -EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR------------ 272 +++ + K E + E + F I ++ EK R + Sbjct: 239 EKEIRESLEIEKYAPEYIFENSQENEIIFKIYSDAHDIHEKADRRESNNKLKEEYIEQGS 298 Query: 273 -HIRQLEKDDVKLIEVPVEYIAGKVVAKDY------------IDESTGELICAANMELSL 319 + +L++ +E E A KD DE + C + + + Sbjct: 299 PLLSKLKQLIFNYVEKNDEIDALLHENKDVEDASFIKNNKKLYDEREEIINCIISEKAAK 358 Query: 320 DLLAKLSQSGHKRIETL----------------------FTNDLDHGPYISETLRVDPTN 357 D++ L K IETL + + + L + Sbjct: 359 DIVELLG-INIKNIETLRHLGKASYQIALQQHFFNKRLYDISSAGRYKFEKKLLLSERLY 417 Query: 358 DRLSALVEIYRM---MRPGEPPTREAAESLFENLFFSEDR-------------------- 394 ++ A I + + P + + L + ++ Sbjct: 418 QKVIANDIIDKKNNILIPKDTLITKEHIELIKKESRDKNIKWTKKINLLPTALESEIEQF 477 Query: 395 YDLSAVGRMKFNR-------SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 + ++ K N + L+ D++ + ++ GE DDIDH Sbjct: 478 LEYESIAVYKDNDLRDETTEIVGLASGCKLQTLTVADLVATTSYIYNLNYEIGEFDDIDH 537 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD------------------------ 483 LGN+R++ + E+ + + R+E+ + E+L++ D Sbjct: 538 LGNKRLKLIHELLRARIATSMARIEKFINEKLAISDGSSNNITNVNDKGIDTELDREIEE 597 Query: 484 --------LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 + + +IN K + VK+FF S QL QF+DQ NPL+E+T+KRRISA+GP Sbjct: 598 SDMSDEEKKKAISVKSIINTKQFQSLVKDFFNSHQLIQFIDQQNPLAELTNKRRISAMGP 657 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GG++RE ++RDVH +HY R+CPIETPEG NIGLI SL+ A+ +E GF+ PY V Sbjct: 658 GGISREDPNLDIRDVHHSHYSRICPIETPEGMNIGLIMSLASLAKVDENGFIVAPYYVVE 717 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 DGVV ++ YL+A E+ NY+IA+++ LDE +++ V R +G + LFS ++VD++D+ Sbjct: 718 DGVVKEDYKYLTAHEDDNYIIAESSVQLDENKRILDEQVVARYRGSTGLFSPNEVDFIDI 777 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 +QVVS+ AS IPF+E+DD RALMG+NMQRQA P ++ P+VGTG E +A DSG+ Sbjct: 778 VPKQVVSIAASAIPFIENDDGARALMGSNMQRQATPLIKPYAPIVGTGTEFKIAHDSGMA 837 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 VAK GVV++VD+ +I+I+ + D +D Y L KY +SNQ+TC NQ+P V +G+ Sbjct: 838 VVAKNDGVVEFVDSQKIIIRNDND-------KLDDYKLIKYRKSNQDTCNNQIPIVKVGQ 890 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 V + + + DGP+ GELALG+N+ V + W GYNFED+I++SER+V +D FT+IHI E Sbjct: 891 RVHKSETIGDGPAMQNGELALGRNILVGYTTWRGYNFEDAIIISERLVDQDVFTSIHIDE 950 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 TK G EEIT D+PNV + A LD GIV +GAEV GD+LVGK TP+G + Sbjct: 951 HTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKTTPRGNVET 1010 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR---DGVEKDKRALEIEEMQ 952 PE++LL+ IFG+K+ VKDSSL+V +G G V V+ +G E +EI ++ Sbjct: 1011 APEDRLLQTIFGDKSKTVKDSSLKVKHGQEGIVAAVKRIKSSDENGSELPDDVIEIIKVY 1070 Query: 953 LKQAKK 958 + Q +K Sbjct: 1071 IVQKRK 1076 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 173/433 (39%), Positives = 253/433 (58%), Gaps = 21/433 (4%) Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 ID + + + + K + I+ G VLV Sbjct: 948 IDEHTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKTTPRGN 1007 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 ++ P DR L+ D+ K + L ++ + ++ + G +L V++ Sbjct: 1008 VETAPEDRLLQTIFGDKSKTVKDSSLKVKHGQ--EGIVAAVKRIKSSDENGSELPDDVIE 1065 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 I+KVY+ KR+IQ GDKMAGRHGNKG++SK+ PI+DMP+ ++GTP+DI+LNPLGVPSRMN Sbjct: 1066 IIKVYIVQKRKIQVGDKMAGRHGNKGIVSKVVPIQDMPFLKDGTPLDIMLNPLGVPSRMN 1125 Query: 1109 IGQILETHLGMAAKGIGDKINAML-------KQQQEVAKLREFI-QRAYDLGADVRQKVD 1160 IGQILE HLG AA IG K + ++ + + E I ++ Y+ +++ + Sbjct: 1126 IGQILELHLGYAAAEIGKKQLIQIAIDQLGYEKYISLFGINEIIAKKLYENISNLIKHKQ 1185 Query: 1161 LSTFSDEEVMRLAENLRK--------GMPIATPVFDGAKEAEIKELLKLGDL---PTSGQ 1209 D +++ + L++ G+ I+TPVFDGA +I ++ ++ G+ Sbjct: 1186 AKQAKDIDLIDVTIILKELGLSYDDIGIKISTPVFDGANHDDIVSIMNEANIDIENNKGK 1245 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 LYDGRTGE F+ ++VG YMLKL+H+VDDK+H+RS G YS +TQQPLGGK+Q GGQR Sbjct: 1246 QVLYDGRTGEPFDGLISVGLTYMLKLDHMVDDKIHSRSVGPYSKITQQPLGGKSQNGGQR 1305 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 FGEMEVWALEAYGAAY L E+LT+KSDDV GR + Y I+ G+ + GMPESF +L K+ Sbjct: 1306 FGEMEVWALEAYGAAYNLLEILTIKSDDVQGRNQAYNAIIKGHDVVADGMPESFKLLTKQ 1365 Query: 1330 IRSLGINIELEDE 1342 ++ LG+ I +E + Sbjct: 1366 MQGLGLCITVETK 1378 >UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax=Deinococcus RepID=RPOB_DEIGD Length = 1152 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 344/805 (42%), Positives = 487/805 (60%), Gaps = 43/805 (5%) Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 K I+++++ + +P L + SF I +V + + R + K K+ Sbjct: 111 KDSGLIKEDQVFLGDLP--LMTDDGSFVINGADRVVISQIHRSPGVYFTSSYKGIKKMYT 168 Query: 287 VPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK--RIETLFTNDLDHG 344 + + + + E G ++ + + L G+ +++ LFT Sbjct: 169 AAIIPMPKRGPWIEL--EFNGGVLEMKVNKRKFPVSLLLRVLGYDDAQLKALFTEFDPAA 226 Query: 345 PYISETLRVDPTN--DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 L D + + AL+ ++ ++RPG+PP R+ A L RYDL GR Sbjct: 227 E-----LPEDKSAGMNPDEALLRLFTVLRPGDPPKRDKAIQYLYGLLADPKRYDLGEPGR 281 Query: 403 MKFNRSLLREEIEGSGILSKDD-------IIDVMKKLIDIRNGKGEV------------- 442 K N L + +L+ +D ++D ++ L+ ++ G V Sbjct: 282 FKMNTKLGTR-RQDRTLLTFEDGRFGDAGLVDTIRYLMALQQGLETVTMGADEDGVAIEV 340 Query: 443 ----DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPI 498 DDIDHLGNRR+R+VGE+ +Q RVG+ R+ R V+ER+ LG+ D P ++N +PI Sbjct: 341 PVTEDDIDHLGNRRVRTVGELLADQLRVGMGRMARGVRERMLLGNPDAATPTKLVNNRPI 400 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 AA++EFFG SQLSQF DQ NPLS++ HKRRISALGPGGLTRERAGF+VRDVH THYGR+ Sbjct: 401 VAAMREFFGRSQLSQFKDQTNPLSDLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRI 460 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CPIETPEG NIGLI+SLS YA+ N+ GF+E PYR+V DG VTD++ Y++A E YVIAQ Sbjct: 461 CPIETPEGANIGLISSLSSYAKVNDLGFIEAPYRRVVDGRVTDDVVYMTADIEDRYVIAQ 520 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 ANS L+ +G F E+ V R KG+ L++ +VD+MDVS +Q+VS+ SLIPFLEHDDANR Sbjct: 521 ANSPLNPDGTFAEERVLARKKGDPMLYAPTEVDFMDVSPKQIVSINTSLIPFLEHDDANR 580 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 ALMG+NMQ QAVP +RAD P VGTG+E V DSG + ++ G V YVDA I + + E Sbjct: 581 ALMGSNMQSQAVPLVRADSPAVGTGVEERVVTDSGTSVISDVTGRVTYVDARAIQVTLTE 640 Query: 739 DEMYPG--EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 D G + + + L ++TRSNQ T ++Q P VS+G+ V G V+ADGP++D G LAL Sbjct: 641 DAPQIGLVKGNVRTFELVRFTRSNQGTNLDQHPIVSVGDEVVPGQVIADGPASDQGRLAL 700 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 GQN+ +A MP++G+NFED+I +SE +V++D +T++HI++ +RDTKLGPE+IT DIP Sbjct: 701 GQNITIAIMPFDGFNFEDAICISEGLVRKDFYTSVHIEKDEIEARDTKLGPEKITRDIPG 760 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 + EAAL LDE GIV +GAEV GDILVGK + KGE++ TPEE+LLR+IFGEKA +VKD+ Sbjct: 761 LSEAALRDLDEDGIVRVGAEVKPGDILVGKTSFKGESEPTPEERLLRSIFGEKAREVKDT 820 Query: 917 SLRVPNGVSGTVIDVQVFTR--DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 SLRV +G G V+ F R +GV+ E+ + + Q ++ + G Sbjct: 821 SLRVQSGQGGIVVKTVRFRRGDEGVDLKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGV 880 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLE 999 + +L + + D P D Sbjct: 881 VSKILPPEDMPYLE-DGTPVDLVFN 904 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 193/490 (39%), Positives = 279/490 (56%), Gaps = 31/490 (6%) Query: 864 KLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 LD+ IV +G EV G ++ G + +G L + + AI + +D+ + + Sbjct: 668 NLDQHPIVSVGDEVVPGQVIADGPASDQGRLAL--GQNITIAIMPFDGFNFEDA-ICISE 724 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLF 972 G+ + +T +EKD+ ++ ++ +D+ +E I+ G Sbjct: 725 GL----VRKDFYTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAALRDLDEDGIVRVGAE 780 Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAK 1032 + +LV + + P +R L ++ ++ + L Q + + Sbjct: 781 VKPGDILVGKTSFKGESEPTPEERLLRSIFGEKAREVKDTSLRVQSGQGGIVVKTVRF-- 838 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 R+ +G DL PGV ++V+VY+A KR++Q GDK+A RHGNKGV+SKI P EDMPY E+GT Sbjct: 839 -RRGDEGVDLKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGVVSKILPPEDMPYLEDGT 897 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLG 1152 PVD+V NPLGVPSRMN+GQILETHLG A+ G K + ++E ++ A Sbjct: 898 PVDLVFNPLGVPSRMNLGQILETHLGEVARLTGQKFVTPVFDSATEEAIKEMLEVA--AA 955 Query: 1153 ADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 ++++ D D+ + + K I+ P D A L +G+ L Sbjct: 956 ERLQRRKDEGFELDKREQEVLDRAGKLGVISPPNGDYAAAQM--------QLARTGKSVL 1007 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 YDGRTGE PV VG MY++KL H+V+DK+HARSTG YSL+TQQPLGGKAQFGGQRFGE Sbjct: 1008 YDGRTGEPISGPVVVGTMYVMKLYHMVEDKLHARSTGPYSLITQQPLGGKAQFGGQRFGE 1067 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 MEVWALEAYGAA+TLQEMLT+KSDD++GR Y++IV G +PESF VL+KE+ S Sbjct: 1068 MEVWALEAYGAAHTLQEMLTIKSDDIDGRDAAYQSIVKGEEVSGSTIPESFKVLVKELHS 1127 Query: 1333 LGINIELEDE 1342 LG+++E+ D Sbjct: 1128 LGLDVEVLDN 1137 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 93/252 (36%), Positives = 146/252 (57%), Gaps = 23/252 (9%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPI 59 S T++K + FG+ +V+ +P L +Q++SF+ F++ D GL++AFR VFPI Sbjct: 2 SLTDQKPRIERFGEITEVIPLPNLTEVQVNSFKAFLQADKAPDERDDTGLQSAFREVFPI 61 Query: 60 -QSYSGNSE---LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 ++ G S L ++ YRLGEP + +EC+ + +TY APL KL+L+ + Sbjct: 62 DETEKGRSTGLVLDFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKDS-------G 114 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 IKE +V++G++PLMTD+G+FVING +RV++SQ+HRSPGV+F S K +Y A Sbjct: 115 LIKEDQVFLGDLPLMTDDGSFVINGADRVVISQIHRSPGVYFTSSYKGI----KKMYTAA 170 Query: 176 IIPY--RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 IIP RG W++ EF L ++++ +RK P +++LR L Y Q+ LF E Sbjct: 171 IIPMPKRGPWIELEF-NGGVLEMKVN-KRKFPVSLLLRVLGYDDAQLKALFTEFDPAAEL 228 Query: 234 DNKLQMELVPER 245 + P+ Sbjct: 229 PEDKSAGMNPDE 240 >UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular organisms RepID=B2IM40_STRPS Length = 824 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 309/542 (57%), Positives = 404/542 (74%), Gaps = 10/542 (1%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DI+ M +++ G G VDDIDHLGNRRIR+VGE+ NQ R+GL R+ER V+ER+ Sbjct: 1 MTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM 60 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 S+ D + L PQ +IN +P++AAVKEFFGSSQLSQFMDQ+NPLSE++HKRR+SALGPGGLT Sbjct: 61 SVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLT 120 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD--G 597 R+RAG+EVRDVH THYGR+CPIETPEGPNIGLIN+LS Y N+YGF++TPYRKV G Sbjct: 121 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETG 180 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VVT+EI +L+A EE Y +AQANS L+E+G F E +V R +G + + + VDYMDVS Sbjct: 181 VVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQGVNQEYPANIVDYMDVSP 240 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +QVV+V + IPFLE+DD+NRALMGANMQRQAVP + P VGTGME A DSG + Sbjct: 241 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPYVGTGMEYQAAHDSGAAVI 300 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+ G V Y DA ++ ++ + +D+Y++ K+ RSN T NQ V +G+ V Sbjct: 301 AQYDGKVTYADADKVEVRRED-------GSLDVYHIQKFRRSNSGTAYNQRTLVKVGDVV 353 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+GD +ADGPS + GE+ALGQN VA+M W GYNFED++++SER+V++D +T++H++E Sbjct: 354 EKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYE 413 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 +RDTKLGPEEIT +IPNVGE AL LDE GI+ IGAEV GDILVGKVTPKGE L+ Sbjct: 414 SETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSA 473 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQA 956 EE+LL AIFG+K+ +V+D+SLRVP+G G V DV++FTR +G E + + + Q Sbjct: 474 EERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQK 533 Query: 957 KK 958 +K Sbjct: 534 RK 535 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 185/530 (34%), Positives = 267/530 (50%), Gaps = 79/530 (14%) Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + + T ++ D L I + A ++ +V +G V GD + Sbjct: 303 YDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAYNQ---RTLVKVGDVVEKGDFI 359 Query: 884 V-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 G GE L + + A + + +D+ + +S ++ V+T +E+ Sbjct: 360 ADGPSMENGEMAL--GQNPIVAYMTWEGYNFEDAVI-----MSERLVKDDVYTSVHLEEY 412 Query: 943 KRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + ++ ++ +++ +E+ I+ G + +LV + D Sbjct: 413 ESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLS 472 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 +R L D+ ++ + L + + K GD+L GV +V+V Sbjct: 473 AEERLLHAIFGDKSREVRDTSLRVPHGADG----VVRDVKIFTRVNGDELQSGVNMLVRV 528 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 Y+A KR+I+ GDKMAGRHGNKGV+S+I P+EDMPY +GTPVDI+LNPLGVPSRMN Sbjct: 529 YIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMN---- 584 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 IG + L Sbjct: 585 -----------IGQVMELHLGMAARTL--------------------------------- 600 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 G+ IATPVFDGA ++ +K + + + LYDGRTGE F+ V+VG MYM Sbjct: 601 ------GIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYM 654 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +KL+H+VDDK+HARS G YS VTQQPLGGKAQFGGQRFGEMEVWALEAYGA+ LQE+LT Sbjct: 655 IKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILT 714 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 KSDD+NGR K Y+ I G +PG+PESF VL+KE++SLG+++ + DE Sbjct: 715 YKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDE 764 >UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax=Nephroselmis olivacea RepID=RPOB_NEPOL Length = 1109 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 288/765 (37%), Positives = 428/765 (55%), Gaps = 41/765 (5%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L F I + +V V + R + +++ + I+ + + Sbjct: 111 LMTSRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKHRR-MFQASIISNRGSWVRLETDV 169 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY--ISETLRVDPTNDRL--- 360 G + + + +L L G + + + + + L D++ Sbjct: 170 DGMIWVRMDKAKKISILIVLEAMGLSKKTIFRSLKSPEFLFKALQQLLAKKRWQDKVYEL 229 Query: 361 ------SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 AL +Y + P +P A + RYD+ VGR+K N+ L Sbjct: 230 IPQSTTDALFHLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLKLPVP 289 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 E L D + LI + G+G+VDDIDHL NRR+R GE+ ++Q R+GL R+ER Sbjct: 290 EHVHTLRPVDFLAATDYLIGLEYGRGQVDDIDHLKNRRVRCAGELIQSQLRIGLNRLERT 349 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 ++ R+S + ++N KP+ AA++EFFGS+ LSQFMDQ NPL+E+THKRR+S+LG Sbjct: 350 MQGRISRP-GELPGMSSLMNPKPVMAALREFFGSNPLSQFMDQTNPLAELTHKRRLSSLG 408 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+++RAG VR++HP+ YGR+CPIETPEGPN GLI S++ YA+ N+YG LE P+ +V Sbjct: 409 PGGLSQDRAGMAVREIHPSQYGRICPIETPEGPNAGLIGSMATYARLNQYGGLECPFYQV 468 Query: 595 TDGVVTDEI--HYLSAIEEGNYVIAQANS---------------NLDE--EGHFVEDLVT 635 +G V E +L+A +E + + LD + + Sbjct: 469 VEGKVLYEFGPIFLTAEQEDQVTVVAGDILDQRKLMVAVAEGRDPLDPAVRPTLPDRPLI 528 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 RS+ E S V+Y+ ++ Q++SV SLIPFLEHDDANRALMG+NMQRQAVP L+ Sbjct: 529 LRSRQEFHTGSFRDVNYVGIAPTQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLKT 588 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY---PGEAGIDIYN 752 + P++GTG+E VA D+G + G+V YVDA+RIV+ ++ ++ + Sbjct: 589 EAPIIGTGLEAQVAADAGGVVQSPFEGIVVYVDATRIVVSTSKSKLALSKKRKIHESNVF 648 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 L Y RSNQ TCI+Q P + L PV RGD+LADG ST G++ALG+N+ VA+MPW GYNF Sbjct: 649 LQVYQRSNQGTCIHQRPIIPLHTPVIRGDLLADGSSTSGGQIALGKNLLVAYMPWEGYNF 708 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA--LSKLDESGI 870 ED+IL+SER++ +D +T++HI+ ++ TKLGPEEIT I + + LDE GI Sbjct: 709 EDAILISERLIYDDLYTSLHIERYEVETQHTKLGPEEITKSIVHETDDKLPYRWLDERGI 768 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V GA V GD+L+GK+TPK E +LTPE +L+ AIFG++ +D+SLRVP GV G V+D Sbjct: 769 VMRGAWVEPGDVLIGKITPKEEKELTPELRLVYAIFGKRPKGFRDTSLRVPQGVRGRVVD 828 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 V++ ++D + + + Q +Q + + G+ SRI Sbjct: 829 VRMIR----DEDTKVVHVYVCQQRQIQVGDKMAGRHGNKGIVSRI 869 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 161/479 (33%), Positives = 243/479 (50%), Gaps = 61/479 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVS 925 I+ + V GD+L G T G+ L + LL A + + +D+ S R+ Sbjct: 666 IIPLHTPVIRGDLLADGSSTSGGQIAL--GKNLLVAYMPWEGYNFEDAILISERLIYDDL 723 Query: 926 GTVIDVQVF----TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 T + ++ + + ++ I + +E I+ G + VL+ Sbjct: 724 YTSLHIERYEVETQHTKLGPEEITKSIVHETDDKLPYRWLDERGIVMRGAWVEPGDVLIG 783 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 E+ + P R + K + L + ++ + +D Sbjct: 784 KITPKEEKELTPELRLVYAIFGKRPKGFRDTSLRVPQGVRGRVVD-------VRMIRDED 836 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 K+V VY+ +R+IQ GDKMAGRHGNKG++S+I P +DMPY ++GTPVD+VLNPL Sbjct: 837 T-----KVVHVYVCQQRQIQVGDKMAGRHGNKGIVSRIVPRQDMPYLQDGTPVDMVLNPL 891 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 GVPSRMN+GQ+ E LG+A + +G ++ + GA+ + + Sbjct: 892 GVPSRMNVGQVFECLLGLAGQRLGQQLKVRAFDEM--------------YGAEASRHLVY 937 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 + + E+ L D G+ RL DGRTG+ F Sbjct: 938 NKLHEAS-------------------------EVTGHHWLFDPNHPGKSRLIDGRTGDMF 972 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 ++ VT+G YMLKL H VDDK+HAR+TG YSL+TQQPLGG+++ GGQR GEMEVWA E + Sbjct: 973 DQAVTIGQAYMLKLIHQVDDKIHARATGPYSLITQQPLGGRSKRGGQRLGEMEVWAFEGF 1032 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 GAAYTLQE+LTVKSDD+ GR ++ +V G E G PESF V+++E+++L ++I + Sbjct: 1033 GAAYTLQELLTVKSDDMQGRNEIMSAMVQGRQLPEMGTPESFKVMIRELQALCLDIGIY 1091 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 22/282 (7%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 RKD P +L P L+SIQ DSF F+E+ GL V P+ L Sbjct: 7 RKDSQWTPFIL--PDLISIQRDSFLLFLER------GLATELSHVTPLTGSHFRITLCSH 58 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 YRL P +QE + +YSA L V + E ++ + Q V+MG+IPLMT Sbjct: 59 GYRLKRPKVSIQEAVYQATSYSAALYVNV-----ETNQSNLGTQETQIQSVWMGDIPLMT 113 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 G F+ING+ RV+V+Q+ RSPG++F + H + ++ A II RGSW+ E D Sbjct: 114 SRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKH---RRMFQASIISNRGSWVRLETDVD 170 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDL-----FFEKVIFEIRDNKLQMELVPERL 246 ++VR+D+ +K+ I+L A+ + + I F K + ++ K + V E + Sbjct: 171 GMIWVRMDKAKKISILIVLEAMGLSKKTIFRSLKSPEFLFKALQQLLAKKRWQDKVYELI 230 Query: 247 RGETASFDIEANGKVYVEK-GRRITARHIRQLEKDDVKLIEV 287 T K+ +K G +TAR + + D K +V Sbjct: 231 PQSTTDALFHLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDV 272 >UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN02_HODCD Length = 1267 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 314/877 (35%), Positives = 464/877 (52%), Gaps = 51/877 (5%) Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + + V + F SS Q+ DQ N LSE++H+ R++ +G GG+ A RDV H Sbjct: 411 QRKLQPVVSKLFRSSSACQYADQVNSLSELSHRLRLTCMGGGGVNARSADTRSRDVRKWH 470 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G+VCPIE+PEG +IGL+ L++YA+ G + T + K G++++++ L+ + + Sbjct: 471 FGKVCPIESPEGQSIGLVLQLAMYARVEASGHIATMFAKSRRGLISNQMLALNCFSQQAF 530 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 IA + V C+ + + VD + Q+ S +LIPFLEH+ Sbjct: 531 SIAIFGA--SPASARVMSFKACKPA----MCAISAVDLWPATNAQLFSPAVNLIPFLEHN 584 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALM +NM +QA+P PLVGTG ERAV + +G +A + VV DA+++V+ Sbjct: 585 DATRALMASNMLKQALPLAEPQAPLVGTGEERAVMLAAGHNLLADQHCVVVRADAAQVVV 644 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + Y Y + + TRSNQ C V + ++ GDV+A+ S+D GE+ Sbjct: 645 YCPCADAYKA------YLVPEPTRSNQGVCRRLRVVVEPNQVLKAGDVVAECQSSDNGEM 698 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 +LG N+ VAFM WNG+N+EDSIL+SE V+ ++H+ +L T G E +T ++ Sbjct: 699 SLGANLLVAFMCWNGFNYEDSILLSEAVIARGLLDSLHVLKLKAKVLRTAFGDELVTNEL 758 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP------------------------- 889 P V E + L E G+V +G V D+LVGK++P Sbjct: 759 PMVAEKHKAHLSEQGVVSVGDTVCEHDVLVGKLSPVDYADSLDVATADAVATAGADDGGD 818 Query: 890 -KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG-VSGTVIDVQVFTRDG-VEKDKRAL 946 L GE VK +SLRVP G +VIDV + + + AL Sbjct: 819 DGDSGGDDGLSVTLVNDMGENIRYVKSTSLRVPTGVECASVIDVSFASCEAEASLGESAL 878 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 + +L ++ + L G ++ AV G K D LE ++ + Sbjct: 879 DACVKELDLIQRRYARRL-----GKVAKWAAVGFDGANACSKPD---HGLVLEAKSSNAQ 930 Query: 1007 KQNQLEQLAEQY-DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 Q + L + Y E+ F + A +I+ + VL + V L V++ I+ GDK Sbjct: 931 AQQAISLLRQLYACEVDALFARASAAASARISCDGPNSASVLDEITVTLLVRKSIKAGDK 990 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 ++GRHGNKGVIS++ P EDMP+ +GTP+DIVLNPL VPSRMNIGQILE LG+ +G Sbjct: 991 VSGRHGNKGVISRVAPAEDMPHLADGTPIDIVLNPLSVPSRMNIGQILEARLGLVGLALG 1050 Query: 1126 DKINAMLKQQQEVAKLREF-IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 + ++ Q E ++ A + + +DL S V+ LA L +G+ + Sbjct: 1051 AEFERVVDACQVADASSERELEGAKSKISSLFPSLDLRRASASRVLALARKLSRGVGLEC 1110 Query: 1185 PVFDGAKEAEIKELLKLGD-LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 P F EA IK L + L SG+++L+DG TG F++ VG +Y+LKLNHLVDDKM Sbjct: 1111 PPFCHLSEACIKALCRRAGALDASGRLQLFDGVTGLPFDQQTAVGSIYVLKLNHLVDDKM 1170 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 +AR+TG YS+VTQQPL GKA GGQR GEMEVWAL++YG +Y L+E LT K DDV R Sbjct: 1171 YARATGPYSMVTQQPLKGKANKGGQRLGEMEVWALQSYGVSYMLKEALTAKCDDVAARHV 1230 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 M +I ++E ES +L++E+ SL ++ E Sbjct: 1231 MASSIAGCAPRVESSWGESLLLLVREMCSLCVDFRFE 1267 >UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acholeplasma sp. DM-2009 RepID=B9VQ44_9MOLU Length = 1223 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 327/826 (39%), Positives = 470/826 (56%), Gaps = 73/826 (8%) Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 ++ D +E E + + + G+V VE G +T + L + L Sbjct: 272 DLYGKIDGITPIEYAKEIIVEQNIVNLL--TGEVIVEAGSVLTPEVRQTLLVNREGLNYA 329 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL--SQSGHKRIETLFTNDLDHGP 345 + Y+ + D + ++ E++ ++ ++ ++ K +E L + Sbjct: 330 SLRYLRT-FIDHDILLADD-SVLFYEGTEVTDEVYFQIYENKQNLKSLEDLKYATVYAKQ 387 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF---ENLFFSEDRYDLSAVGR 402 I + L ++ + + + +M G T E L L + +Y L A + Sbjct: 388 DI-DILEDYRRHESVESQRDHKPIMYCGYEITDENLLELQINRNKLDENVIKYFLVAGKK 446 Query: 403 MKFNRS-----------------------------LLREEIEGSGILSKDDIIDVMKKLI 433 +F R + + E ++ DII + + Sbjct: 447 GEFYRKESQRRATFVEVIQIKAAKDAKDDKDVIELIGHDSRETRLHITVSDIIASISYYL 506 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 ++ +G G++DDIDHL NRR+R +GE+ +NQFR+GL ++E+ +K+++S D Q +I Sbjct: 507 NLYDGVGKIDDIDHLSNRRLRLIGELLKNQFRIGLAKLEKNIKDKMSTADAKEASLQSLI 566 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 N KP++A++KEFFGSSQLSQFMDQ NPL+E+T KRR+SALG GGL R+RAG EVRDVH + Sbjct: 567 NIKPLTASLKEFFGSSQLSQFMDQINPLAELTQKRRVSALGTGGLARDRAGVEVRDVHES 626 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG-----VVTDEIHYLSA 608 HYGR+CPIETPEGP+IGLI+SL+ YA+ ++YGF++TPY KV VT E Y +A Sbjct: 627 HYGRICPIETPEGPSIGLISSLASYAKVDQYGFIQTPYLKVDKSDPEHPFVTSEYVYFTA 686 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 EE +++IA A+S DE GHF + V R G++ + +VDYMDVS +Q+VSV S I Sbjct: 687 GEEEHHIIASADSQTDENGHFKTETVIGRFMGDTRSYPSKKVDYMDVSPKQIVSVATSSI 746 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 PFLEHDDA+RALMGANMQRQAVP L D P+VGTG+E A DSG VA GVV Y D Sbjct: 747 PFLEHDDASRALMGANMQRQAVPLLVPDSPIVGTGIEYRSAKDSGSAIVAHVDGVVTYAD 806 Query: 729 ASRIVIK---------------VNEDEMYPGEA-------------GIDIYNLTKYTRSN 760 +IVI ++D + EA + Y LT++ RSN Sbjct: 807 GRKIVIAVKPEASIKTTRGKLVYDKDTEFNWEAYDQIRQAKMTDLLRFETYPLTQFLRSN 866 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q+T I Q P V +GE +++GDV+ADGPS + GELALG+N+ VAFM W GYN+ED++++SE Sbjct: 867 QDTSILQKPIVQIGEKIDKGDVIADGPSINKGELALGRNVVVAFMTWEGYNYEDAVIMSE 926 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +V+ D +T+IHI E SRDTKLG EEIT +IPNV AL LD+ G+V G EV G Sbjct: 927 DLVKNDVYTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLDDRGVVIPGTEVKEG 986 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGV 939 DILVGK+TPKG+T+ TPEEKLL+AIF EKA +V+D+SL+VP+G G V +Q F++ +G Sbjct: 987 DILVGKITPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGGIVHSIQYFSKSNGD 1046 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 E E+ + + + +K + G I +L + Sbjct: 1047 ELGPGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMP 1092 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 143/408 (35%), Positives = 203/408 (49%), Gaps = 66/408 (16%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSL----RVPNGV 924 IV IG ++ GD++ G KGE L ++ A + + +D+ + V N V Sbjct: 876 IVQIGEKIDKGDVIADGPSINKGELAL--GRNVVVAFMTWEGYNYEDAVIMSEDLVKNDV 933 Query: 925 SGTV-IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 ++ ID + K + E + ++ ++ G + +LV Sbjct: 934 YTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLDDRGVVIPGTEVKEGDILVGKI 993 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + P ++ L+ ++ ++ + L + + +K + GD+L Sbjct: 994 TPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGGIVHSIQYFSK----SNGDELG 1049 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV ++++VY+ KR+I GDKMAGRHGNKGVISKI P EDMPY +GTPVDI+LNPLGV Sbjct: 1050 PGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMPYMADGTPVDIMLNPLGV 1109 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNIGQ+LE HLGMAAK +G K+ + L+ Sbjct: 1110 PSRMNIGQVLEIHLGMAAKKLGIKVATPVFDG-------------------------LTQ 1144 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 E+VM A G + LYDGRTGE +E Sbjct: 1145 LDLEQVMAEAGMASDGKQV-----------------------------LYDGRTGEPYEN 1175 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 V+VG MYM+KL+H+VDDK+HARS G Y+LVTQQP+GGKAQ GGQRFG Sbjct: 1176 RVSVGVMYMIKLSHMVDDKLHARSVGPYTLVTQQPMGGKAQNGGQRFG 1223 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 36/179 (20%) Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLF--FEKVIFE------ 231 G+WL++E K+ + ++DR +K+ T +L+A + E+I LF ++K++ E Sbjct: 1 GAWLEYEMGAKNIFYGKLDRSKKVSLTALLQAFGFDGIEEIKKLFPTYKKMLDETFKKDE 60 Query: 232 ----IRDNKLQMELVPERLRGETAS-----------------FDIEANGKVYVEKGRRIT 270 + + +L + +GE +D+E G+ ++ IT Sbjct: 61 KEGILSSDTAIEDLYSKLRQGEKIPVSAAKEFVRTRLFDSRRYDLEEVGRYKFKQKLDIT 120 Query: 271 ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 R + + I P + K A+D ID T ++ A + + + + LSQ Sbjct: 121 NRLMTIAQG-----ITAPNQPAIYKY-AQDVIDPVTKAILVAKDQIVDVASVELLSQHR 173 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%) Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 LL G + I+ LF + + +A+ ++Y +R GE Sbjct: 28 ALLQAFGFDGIEEIKKLFPTYKKMLDETFKKDEKEGILSSDTAIEDLYSKLRQGEKIPVS 87 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 AA+ F RYDL VGR KF + L Sbjct: 88 AAKEFVRTRLFDSRRYDLEEVGRYKFKQKL 117 >UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax=Viridiplantae RepID=RPOB_OLTVI Length = 1416 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 261/749 (34%), Positives = 400/749 (53%), Gaps = 72/749 (9%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 R VP +++Q +SF +F+E GL PI + + EL + Y+L Sbjct: 6 RQNSFLVPDFIAVQRNSFSQFLES------GLIQEISKRNPITNSTKELELCFYPQYYKL 59 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 P + ++ ++ TYS L + ++L K +K Q V +G +PLMT G Sbjct: 60 SPPELNAKQSILKNKTYSCRLYIPVKLTNKR-------TKTLKLQWVVLGNLPLMTKRGH 112 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ING+ RVI++Q+ RSPGV+F K +H+ K+ Y A +I YRG+WL E D K +++ Sbjct: 113 FIINGSPRVIINQMVRSPGVYF---KEVSHADQKLTYYADLIAYRGAWLRIELDKKADIW 169 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 R+ + KLP I+L+AL IL L ++ Sbjct: 170 ARMKKTPKLPMLILLQALGLNLPTILKS----------------------LNYPKFFENL 207 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +G +QL+K V E +++D + ++ Sbjct: 208 GHDGNFM------------KQLKKGRVSSRSSSQELSGSFNLSEDVS-----LRLDDSSK 250 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + + + + + TLF G + ++ + L AL + ++ + Sbjct: 251 NMGAENVQRAPLQKSTKKATLF------GDFSRSSVYCKTQEEALWALYALTHPLKNPDE 304 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 T +S F + YDLS +GR++ N+ L E ++ D++ + LI++ Sbjct: 305 VTANLGKSFLYRKFMNSRVYDLSPLGRLRLNQKLNLSVNENITTITAQDLLFITNTLINL 364 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G G+VDDID+L NRRIR+ GE+ +NQF +GL+R+E+ ++E+L L +IN Sbjct: 365 NYGVGKVDDIDNLKNRRIRTAGELVQNQFGIGLLRLEKIIREKLKQQQTK-LSIGSLINT 423 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 KPI+ A++EFFGSS LSQFMDQ NPL+EITHKRR+S+LGPGG+ RE AG +R +HPTHY Sbjct: 424 KPINGALREFFGSSPLSQFMDQTNPLAEITHKRRLSSLGPGGVNRETAGMAIRGIHPTHY 483 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGN 613 GR+CPIETPEG N GL+NSL++Y++ N YGF+ETP+ KV G V + + SA +E Sbjct: 484 GRICPIETPEGQNAGLVNSLTIYSRVNPYGFIETPFYKVVKGQVQNSTRPIFFSAYQEEK 543 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 ++A + ++ + + + R E + +R+++DY+ VS Q++S+ SLIPFLEH Sbjct: 544 KLLAPGDIYANKLKYLPKSELPIRKLAEFTRTTREKIDYISVSPLQMISIATSLIPFLEH 603 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 DDANRALMG+NMQRQAVP + A+ P+VGTG+E VA DSG AK+ G V Y A +I Sbjct: 604 DDANRALMGSNMQRQAVPLMTAEAPVVGTGLECRVASDSGHVLQAKKSGFVTYSSAEKIT 663 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 I + P ++ + L+K S Q+ Sbjct: 664 I------LSPVDSTPAVPKLSKGNNSPQH 686 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 166/479 (34%), Positives = 247/479 (51%), Gaps = 57/479 (11%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V G V GD+L T GE L + LL A + + +D+ L +S + Sbjct: 970 VVREGEWVNRGDLLADNSTTVGGELSL--GKNLLLAYMPWEGYNFEDAIL-----ISERL 1022 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE--LQILEAGLFSRIRAVLVAGGVEA 986 + +T +E+ + + + L+Q + +E L L+ ++ + G + Sbjct: 1023 VSDDAYTSLHIERYEVEIRETKFGLEQITSQIPDEGKLSHLDHFGIAKPGTWVEEGDILI 1082 Query: 987 EKLDKLPRDRWLEL-GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 K+ +P+ L + ++ + + ++ +I ++L P Sbjct: 1083 GKVAPMPQKNLSRYEKLLYDVVGKKISTTRDTSLRVPRGVSGRVIH--VEILNAENLPPE 1140 Query: 1046 VL----KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 + V +Y+A KR+I GDKMAGRHGNKG+IS I P +DMPY +GTP+D+VLNPL Sbjct: 1141 FVFEGPSRVNLYIAEKRKIHVGDKMAGRHGNKGIISNILPRQDMPYLPDGTPLDMVLNPL 1200 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 GVPSRMN+GQI E LG+A + +G K + G + + Sbjct: 1201 GVPSRMNVGQIYECLLGLAGRYLGQKFKVRPFDEI--------------YGPQTSRSLVY 1246 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 S + + L + + G+ RL+DGRTGE F Sbjct: 1247 SKLYEARLRTGQR-------------------------WLFNPASPGKTRLFDGRTGECF 1281 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 +PVTVG YMLKL HLVD+K+HARS G YSLVTQQPL G+++ GGQR GEMEVWALE + Sbjct: 1282 SQPVTVGQAYMLKLIHLVDEKIHARSIGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGF 1341 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 GAAYTLQE+LTVKSDD+ GR ++ ++I N + G PESF VL++E++SL +++ + Sbjct: 1342 GAAYTLQELLTVKSDDIKGREQVMESI-QKNKTISLGTPESFKVLIRELQSLCLDVGVY 1399 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 +K+ G Y AS + D + Y L K RSNQ+T I P V GE V Sbjct: 918 SKKTGEALYKLASSESATKSMDFSTKTQLKPITYELQKLFRSNQDTSIMHRPVVREGEWV 977 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 RGD+LAD +T GEL+LG+N+ +A+MPW GYNFED+IL+SER+V +D +T++HI+ Sbjct: 978 NRGDLLADNSTTVGGELSLGKNLLLAYMPWEGYNFEDAILISERLVSDDAYTSLHIERYE 1037 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R+TK G E+IT+ IP+ E LS LD GI G V GDIL+GKV P + L+ Sbjct: 1038 VEIRETKFGLEQITSQIPD--EGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKNLSR 1095 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 EKLL + G+K S +D+SLRVP GVSG VI V++ + + + Sbjct: 1096 YEKLLYDVVGKKISTTRDTSLRVPRGVSGRVIHVEILNAENLPPE 1140 >UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Tax=cellular organisms RepID=RPOB_PHATR Length = 1389 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 313/935 (33%), Positives = 466/935 (49%), Gaps = 63/935 (6%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD 81 + YL Q +S F++ L + +S +L +L F Sbjct: 199 YSIKYLKQKQQNSTFYFLQSFK-----LYRVASKLLSSKSKQRVIQLFLKWLKLKNKSF- 252 Query: 82 VQECQIRGVTYSAPLRVKL--RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 E Q Y L L+ YE T K +++ + + + ++N Sbjct: 253 --EFQDEKQIYLIKYFNFLLTSLMKYEILQSSLTTKFNEDKTILLSKF----TKSNAILN 306 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL----DFEFDPKDNLF 195 +++ I++ + +S L+ P WL +F F K Sbjct: 307 LSDKQIINLSMIYNKLIINSQTLAQMELNSNLFLITKEPR--EWLTEMSNFLFLKKQISK 364 Query: 196 VRIDRRRKLPATII-----LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 + T + + + ++ L F K + ++ + + Sbjct: 365 ATFTLKSFQELTQLQNLKPAIYFSISLKEQLKYVFGKNKLTYKSDRHKYLKTKTQFLLYR 424 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +I+ N ++ TA I + + + + K K D E+I Sbjct: 425 KDHEIKTNYNKKYDEKDLYTATVIPEYGSWIRIGFQRNTKINSYKYPLKSQED----EVI 480 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + +L L + G +E + Y ++ L ++ Sbjct: 481 IQLDKINQKPVLYLLKEMGLTDLEIYQNLEYADFFYFNKPLLINSK-------------- 526 Query: 371 RPGEPPTREA-AESLFENL-----FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 R EP +R S F+N+ F Y L VGR+K N L + E ++ +D Sbjct: 527 RLSEPLSRFNLGLSYFKNISEFSRIFDPTYYRLGRVGRLKINSRLNLKMSERLQTITYED 586 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL 484 I + KLI++ K DDIDHL NRR+RSVGE+ +N FR+G R+ R ++ + + D Sbjct: 587 IFAITDKLINLTISKTVQDDIDHLKNRRVRSVGELLQNLFRIGFQRLGRKLRNQTNKIDS 646 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 L+ +++N A+++EFFGSSQLSQ++DQ NPLS +TH+RR+S LGPGG R+R Sbjct: 647 GQLLSFNIVN-----ASIREFFGSSQLSQYLDQTNPLSSLTHRRRVSGLGPGGFDRDRIS 701 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV--TDE 602 F VRD+HP+HYGR+CPIETPEG N+GLI SL+ A+ N+ GFLETP+ +V +G V T + Sbjct: 702 FAVRDIHPSHYGRICPIETPEGQNVGLIASLTTCARVNKSGFLETPFWRVINGKVVKTGQ 761 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 YL+A E Y IA A+ +++ + ++++ R K + + +VD++ +ST QVVS Sbjct: 762 PVYLTADIEDFYKIAPADIATNKDNYLTKNVIPVRYKQDFVNVTPSEVDFIAISTIQVVS 821 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 V ASLIPF EHDDANRALMG+NMQRQ+VP L KP+VGTG+E +A+DSG+T + G Sbjct: 822 VAASLIPFFEHDDANRALMGSNMQRQSVPLLLPQKPIVGTGLENQIAIDSGMTLNSYSNG 881 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 VV V A++IV+ + Y L KY RSNQ TCIN P V GE V+ G + Sbjct: 882 VVSSVTANKIVVNDKTGKRL-------TYKLQKYLRSNQQTCINHRPIVWKGEQVKSGQI 934 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 L DGP+ EL+LGQN+ + +MPW GYNFED+IL++ER+V +D FT+IHI+ Sbjct: 935 LTDGPAITSSELSLGQNVLIGYMPWQGYNFEDAILINERLVYDDVFTSIHIERYKIEIDR 994 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 E T +IPN+ + L++ GIV +G V GDILVGKV ++ PE KLL Sbjct: 995 NSDTLERTTKNIPNLNPREIRHLNDDGIVTVGTFVRPGDILVGKVISNNTSEQLPESKLL 1054 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 RAIFG KA VKD+S R+ +G G VI+ F R Sbjct: 1055 RAIFGAKAKGVKDNSYRMSDGEYGRVIETVTFNRR 1089 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 170/483 (35%), Positives = 249/483 (51%), Gaps = 70/483 (14%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF----GEKASDVKDSSLRVPNGVS 925 IV+ G +V G IL G + E L + + + + +D+ L ++ Sbjct: 922 IVWKGEQVKSGQILT-----DGPAITSSELSLGQNVLIGYMPWQGYNFEDAIL-----IN 971 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQ------ILEAGLFSRI 975 ++ VFT +E+ K ++ L++ K++ E++ I+ G F R Sbjct: 972 ERLVYDDVFTSIHIERYKIEIDRNSDTLERTTKNIPNLNPREIRHLNDDGIVTVGTFVRP 1031 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 +LV + ++LP + L + K + E E +R K Sbjct: 1032 GDILVGKVISNNTSEQLPESKLLRAIFGAKAKGVKDNSYRMSDGEYGRVIETVTFNRRTK 1091 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 +T + + V++A R+IQ GDK+AGRHGNKG+IS+I +DMP+ +GTP+D Sbjct: 1092 LTYK-------FEKIYVFIAQIRKIQVGDKIAGRHGNKGIISRILSRQDMPFLPDGTPLD 1144 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I+LNPLGVPSRMN+GQ+ E LG+A + + + D Sbjct: 1145 ILLNPLGVPSRMNVGQLYECLLGLAGDKLNARFKILPF--------------------DE 1184 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 +++S + +R A + + P G++ L DG Sbjct: 1185 MYGLEISRILINKKLRQASIAKNESWLFNPY-------------------APGKMVLIDG 1225 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 RTG++FE PVTVG YMLKL HLVDDKMHAR+TG YSL+TQQPL GKAQ GGQRFGEMEV Sbjct: 1226 RTGKEFENPVTVGNAYMLKLIHLVDDKMHARATGPYSLITQQPLRGKAQHGGQRFGEMEV 1285 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 WALE +GAA+TL+E+LT+KSDD+ GR + IV G + G+PESF VLL E+RS+G+ Sbjct: 1286 WALEGFGAAFTLKELLTIKSDDMQGRNETLNAIVKGQQIPKFGIPESFKVLLHELRSIGL 1345 Query: 1336 NIE 1338 ++ Sbjct: 1346 DMS 1348 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 98/528 (18%), Positives = 193/528 (36%), Gaps = 76/528 (14%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE--LQYVSYRLGEPVFD 81 +P L++Q SF FI Q GL IQ +S N+E + Y L +P + Sbjct: 7 LPDFLAMQRISFCWFITQ------GLTEELALFSRIQDFSQNTEYVMFGEEYSLIKPSYS 60 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY-MGEIPLMTDNGTFVING 140 + + Y A L + + E V I+ + + +PLMT + TF+ING Sbjct: 61 LLIARKYSGNYRAQLVIPI-------EVRNKVVNSIRYHNQFPIITLPLMTTDATFIING 113 Query: 141 TERVIVSQLHRSPGVFFDSDKG-KTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 ERVIVSQ+ RSPGV+F+ +K KT + K + I R F P F Sbjct: 114 CERVIVSQIIRSPGVYFEKNKNQKTRNQFKKKLSTDINKLR------SFIPSGEAF---- 163 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 + + L + + + + ++ + + + + ++F + Sbjct: 164 ----ISEFDLFFPLPTSIYDPVKKKKKIIPHWQSNSIYYYSIKYLKQKQQNSTFYFLQSF 219 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI--CAANMEL 317 K+Y + ++++ +++ + +K +++ + + + Y+ + L+ L Sbjct: 220 KLYRVASKLLSSKSKQRVIQLFLKWLKLKNKSFEFQDEKQIYLIKYFNFLLTSLMKYEIL 279 Query: 318 SLDLLAKLSQSG-------HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 L K ++ K L +D +S N + A +E+ + Sbjct: 280 QSSLTTKFNEDKTILLSKFTKSNAILNLSDKQIIN-LSMIYNKLIINSQTLAQMELNSNL 338 Query: 371 R-----PGEPPT---------REAAESLFENLFFSEDR----------YDLSAVGRMKF- 405 P E T ++ +++ F F E + +S ++K+ Sbjct: 339 FLITKEPREWLTEMSNFLFLKKQISKATFTLKSFQELTQLQNLKPAIYFSISLKEQLKYV 398 Query: 406 ---NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 N+ + + ++ I K + D+ D +V + Sbjct: 399 FGKNKLTYKSDRHKYLKTKTQFLLYRKDHEIKTNYNK-KYDEKDLYT----ATVIPEYGS 453 Query: 463 QFRVGLVRVERA--VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 R+G R + K L + + ++ D IN KP+ +KE + Sbjct: 454 WIRIGFQRNTKINSYKYPLKSQEDEVIIQLDKINQKPVLYLLKEMGLT 501 >UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax=Heterosigma RepID=RPOB_HETCA Length = 1116 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 282/662 (42%), Positives = 406/662 (61%), Gaps = 23/662 (3%) Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 ++I P Y + + + + ST +I L + + + + D Sbjct: 131 RNQIIRCPGLYYKAEFLNNNIV--STVTIIAQRGSWLKFEFDKNGYWVRIDKEKKISIFD 188 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA---AESLFENLFFSEDRYDL 397 G I++ + L ++ + + + E R ++L E + + Y L Sbjct: 189 FLEGLNIND----EEILSGLKSIAPLLKYKKTQEILKRNNDPDLKNLIEKIT-DPNSYSL 243 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 +GR+ NR L L+ DI ++ + R+ DDID L NRRIR+VG Sbjct: 244 GIIGRLNLNRRLGLNISTRVHTLTIHDIFGIIDFFLSARS--FVPDDIDDLRNRRIRAVG 301 Query: 458 EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 E+ +Q +GL R+ER + ER + ++P+ ++NA+PI +A++EFF SSQLS +MDQ Sbjct: 302 ELITSQCEIGLNRLERNILERTNFSGSVRILPKTLVNARPIMSAIQEFFNSSQLSHYMDQ 361 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N LSE +KRRISALGPGGL +R RD+HPT YGR+CPIETPEG N+GL+++L+ Sbjct: 362 TNLLSETANKRRISALGPGGLNADRVTVAARDIHPTQYGRLCPIETPEGQNVGLVSTLAS 421 Query: 578 YAQTNEYGFLETPYRKVTDGVV--TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 YA+ N GF++TPY +V +G + + YL+A +E N IA A+ D++G+ V+D + Sbjct: 422 YARINRNGFIQTPYFRVENGKILTQQPLIYLTAEQE-NLKIAPADVKRDQDGYLVDDFIV 480 Query: 636 CRSKGESSLFSRDQ-VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 R + ++ + + + VD++ VS Q++SV ASLIPFLEHDDANRALMGANMQRQAVP L Sbjct: 481 TRFQSKNFIITPSKLVDFISVSEIQIISVAASLIPFLEHDDANRALMGANMQRQAVPLLY 540 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 KP+VGTG+E VA DS + +A + G+V+YV + +I IK E E Y L Sbjct: 541 PRKPIVGTGIESQVAFDSRLVNIATKPGIVKYVSSQQIDIKNIEGEKIA-------YKLI 593 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 KY SNQ+TC+NQ P V +G+ ++ G V+ADGP T GELALGQN+ VA+MPW GYN+ED Sbjct: 594 KYRPSNQDTCLNQRPLVWVGQSIKTGQVIADGPGTQSGELALGQNLTVAYMPWQGYNYED 653 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 +ILVS+++ ++ FT+IHI+E + TK G + IT+DIP V E LDE+GI+ +G Sbjct: 654 AILVSDKLDIQNLFTSIHIEECETEVQQTKTGEQVITSDIPLVSEKNCKNLDENGIIKVG 713 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 V GDILVGK+TPKGE PE KLL+AIFG K D++DSSLRVP G+SG V+D+++F Sbjct: 714 KYVYPGDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMRDSSLRVPGGLSGRVLDIKIF 773 Query: 935 TR 936 + Sbjct: 774 KK 775 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 168/485 (34%), Positives = 253/485 (52%), Gaps = 62/485 (12%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ +V++G + G ++ G T GE L + L A + + +D+ L Sbjct: 604 LNQRPLVWVGQSIKTGQVIADGPGTQSGELAL--GQNLTVAYMPWQGYNYEDAIL----- 656 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFS 973 VS + +FT +E+ + ++ + + D+ +E I++ G + Sbjct: 657 VSDKLDIQNLFTSIHIEECETEVQQTKTGEQVITSDIPLVSEKNCKNLDENGIIKVGKYV 716 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 +LV ++D+LP + L+ + + L + K+ K Sbjct: 717 YPGDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMRDSSLRVPGGLSGRVLDIKIFKKP 776 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 + GV ++V++A ++Q GDK+AGRHGNKGVIS+I P +DMP+ +GT Sbjct: 777 KPGKV-----FGVGSKIRVFIAQISKLQVGDKIAGRHGNKGVISRILPHQDMPFLPDGTS 831 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VDI+LNPLGVPSRMN+GQI E LG+A + + + + Sbjct: 832 VDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFKILPFDE------------------ 873 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + +N + I + D AK+ L + G+I L Sbjct: 874 ------------------MYQNEASRILINQKLKDAAKKQNKPWLFSAY---SPGKILLS 912 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTGE+F+ PV VG Y+LKL HLV+DK+HARSTG YSL+TQQP+GGK+Q GGQRFGEM Sbjct: 913 DGRTGEKFDNPVLVGRSYILKLAHLVEDKIHARSTGPYSLITQQPVGGKSQNGGQRFGEM 972 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEA+GAAYTLQE+LT+KSDD+ GR + +IV G + +PESF VL++E+ +L Sbjct: 973 EVWALEAFGAAYTLQELLTIKSDDMQGRDDVLNSIVCGQEIPKSSIPESFKVLMRELNAL 1032 Query: 1334 GINIE 1338 G++I Sbjct: 1033 GLDIT 1037 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS-GNSELQYVSYRL-GEP 78 + +P L IQ SF F+ GL S+ PI + +L+ +P Sbjct: 7 ITKLPDFLEIQRSSFCWFL------LKGLSYELNSLSPIIDVNVKRVKLKLYPQEFVLKP 60 Query: 79 VFDVQEC-QIRGVTYSAPLRVKLRLVIYEREAPEGTVK----DIKEQEVYMGEIPLMTDN 133 C + TY + + ++ + E+ T K DIKE+ V++G+IPLMT Sbjct: 61 GRTTPICAKQNDSTYGVRIFLPAEVIYCDTESKYPTKKNRLEDIKEK-VFIGQIPLMTST 119 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 G+F++NG E +Q+ R PG+++ ++ + ++ II RGSWL FEFD K+ Sbjct: 120 GSFIVNGCEGY-RNQIIRCPGLYYKAEFL----NNNIVSTVTIIAQRGSWLKFEFD-KNG 173 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQI---LDLFFEKVIFEIRDNKLQMELVPER 245 +VRID+ +K+ L LN E+I L + ++ L+ P+ Sbjct: 174 YWVRIDKEKKISIFDFLEGLNINDEEILSGLKSIAPLLKYKKTQEILKRNNDPDL 228 >UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 Tax=cellular organisms RepID=RPOB_ARATH Length = 1072 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 256/768 (33%), Positives = 419/768 (54%), Gaps = 23/768 (2%) Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR-QLEKDDVKLI 285 K +++ ++ + +P L + + ++ + + + + + +L+ + + + Sbjct: 89 KTSRNMQEQRIFIGNIP--LMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHNGISVY 146 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + + ++ + ++S+ +L+ + I Sbjct: 147 TGTIISDWGGRLELEIDKKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIFLS 206 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 ++++ + +A++E Y+ G+P E+ + FF R +L +GR Sbjct: 207 FLTDK-EKKKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFH-QRCELGRIGRR 264 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 N L + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++Q Sbjct: 265 NINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ 324 Query: 464 FRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 + L R+E VK + L PQ+++ + P++ + FFG LSQ +D+ NPL Sbjct: 325 LGLALARLENVVKGTIGGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPL 384 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ++I H R++S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SLS++A+ Sbjct: 385 TQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARI 444 Query: 582 NEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 ++G LE+P+ ++ + I +LS ++ Y+IA NS G E V R + Sbjct: 445 GDWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQAVPARYR 504 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 E + ++V + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K + Sbjct: 505 QEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCI 564 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 VGTG+ER VA+DSGV A+A+ G + Y D +IV+ N D + L Y RS Sbjct: 565 VGTGLERQVALDSGVPAIAEHEGKILYTDTEKIVLSGNGDTLS--------IPLIMYQRS 616 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 N+NTC++Q P V G+ +++G +LADG +T GELALG+N+ VA+MPW GYNFED++L+S Sbjct: 617 NKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFEDAVLIS 676 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 E +V D +T+ HI++ + T GPE IT +IP++ L LD++GIV +G+ V Sbjct: 677 ECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVET 736 Query: 880 GDILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GDILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + Sbjct: 737 GDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKK 796 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G EI + + Q ++ + G I +L + Sbjct: 797 GGSSYNP--EIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMP 842 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 141/426 (33%), Positives = 210/426 (49%), Gaps = 58/426 (13%) Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 +S + I V T+ K +E L+ K+ I+ G + Sbjct: 686 TSFHIRKYE----IQTHVTTQGPERITKEIPHLEGRLLRNLDKN-----GIVMLGSWVET 736 Query: 976 RAVLVAGGVEA--EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 +LV ++ P DR L L + ++ L + + K+ Sbjct: 737 GDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKK 796 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 G P +I++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G P Sbjct: 797 ----GGSSYNP---EIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRP 849 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VD+V NPLGVPSRMN+GQI E LG+A ++L + +A E ++ Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECSLGLAG--------SLLDRHYRIAPFDERYEQ------ 895 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + +K+ S + + + G+ R++ Sbjct: 896 EASRKLVFSELYEASKQTANP-------------------------WVFEPEYPGKTRIF 930 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTG+ FE+PV +G Y+LKL H VD +H RS+G Y+LVTQQPL G+++ GGQR GEM Sbjct: 931 DGRTGDPFEQPVIIGKPYILKLIHQVDVIIHGRSSGHYALVTQQPLRGRSKQGGQRVGEM 990 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRS 1332 EVWALE +G A+ LQEMLT KSD + R ++ + G +P ESF +L++E+RS Sbjct: 991 EVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAQESFRLLVRELRS 1050 Query: 1333 LGINIE 1338 L + + Sbjct: 1051 LALELN 1056 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 141/330 (42%), Gaps = 28/330 (8%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 +P IQ + F +FI+Q GL I+ E Q +Y+L EP+ Sbjct: 12 IPGFNQIQFEGFYRFIDQ------GLIEELAKFPKIEDIDHEIEFQLFVETYQLVEPLIK 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ +TYS+ L V L+ T ++++EQ +++G IPLM GT ++NG Sbjct: 66 ERDAVYESLTYSSELYVSAGLIW-------KTSRNMQEQRIFIGNIPLMNSLGTSIVNGI 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R++++Q+ +SPG+++ S+ +G +Y II G L+ E D K ++ R+ R+ Sbjct: 119 YRIVINQILQSPGIYYQSE---LDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRK 175 Query: 202 RKLPATIILRALNYTTEQILDLF-FEKV--IFEIRDNKLQMELVPERLRGETASFDIEAN 258 +K+ ++ A+ +IL+ + ++ F K ++ + F Sbjct: 176 QKISILVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGG 235 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL- 317 ++ E + + + ++ + + + ++ I +++ AA+ + Sbjct: 236 DPIFSESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIG 295 Query: 318 ------SLDLLAKLSQSGHKRIETLFTNDL 341 +LD + L + + L + L Sbjct: 296 MKFGMGTLDDMNHLKNKRIRSVADLLQDQL 325 >UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BEC3_9CHLO Length = 1115 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 253/750 (33%), Positives = 401/750 (53%), Gaps = 57/750 (7%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L + F I + ++ + + R + +++ K + I+ + + Sbjct: 97 LMTKRGHFIINGSPRIIINQIIRSPGIYYQEVFDKKKKRKYY-ADLISFRGTWLRLEIDK 155 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL-RVDPTNDRLSALV 364 + + +L L G L + ++H ++ + + AL Sbjct: 156 KKAIWARMKKTPKISILIFLQAMGLTN--QLIFHSIEHSDFLKNSFSDEENLTTTEEALK 213 Query: 365 EIYRMMRPGEPPTREA---AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 +Y + P + T + F + YDLS +GR + N L + L+ Sbjct: 214 LLYSEINPKKEETSIKSSMGQKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLT 273 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 DI+ + LI + +G G++DDIDHL NRR+R+ GE+ +NQ +GL+R+E+ ++E+L Sbjct: 274 PHDILYAINYLIKLEHGFGKIDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLK- 332 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541 + ++ Q++I K I+ A++EFFGSSQLSQFMDQ NPL+EITHKRR++++GP G++RE Sbjct: 333 KNRKNIILQNLITTKAINGALREFFGSSQLSQFMDQTNPLAEITHKRRLTSIGPNGVSRE 392 Query: 542 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 AG +R +HPTHYGR+CPIETPEGPN GL+NS++ YA+ N GFLETP+ K G + Sbjct: 393 TAGMALRGIHPTHYGRICPIETPEGPNAGLVNSITSYAKINSKGFLETPFYKTFKGQIQK 452 Query: 602 EIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 ++ + SA EE ++ ++ N + + + R E+ +DQV+Y +S Q Sbjct: 453 KLKPLFFSAEEEETKILISSDLNSSKFYFLPKKKIPTRFGTETQQTKKDQVEYSAISQIQ 512 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 ++S+ SLIPFLEH+DANR+LMG+NMQRQAVP ++ ++P+VGTG+E + DS + Sbjct: 513 MISIATSLIPFLEHNDANRSLMGSNMQRQAVPLIKPERPVVGTGLEGRIISDSDHALQTQ 572 Query: 720 RGGVVQYVDASRIVIKV-------------------NEDEMYPGE--------------- 745 G + YV +I++ + ++P + Sbjct: 573 FTGYISYVSGKKIIVYTIKKKKNLSLNLQKSTKNSFFSEYLFPKKLKKNSTNKIKKNPLI 632 Query: 746 -------------AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + L + RSNQ T + + G +++ D+LAD + G Sbjct: 633 KRNTLFIEIIKNSIKKNEILLHTFQRSNQETLLTHYASICEGNWIQKNDLLADSSCSLKG 692 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 E+ALG+N+ +A+MPW GYNFED++L++ER+V ED +T+IHI+ RDTK G E+IT Sbjct: 693 EIALGKNILIAYMPWEGYNFEDAVLINERLVYEDIYTSIHIERFELEIRDTKFGLEKITN 752 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 912 +P V + L LDE GI IG+ V G IL+GK+TP + L P EKLL I G+K Sbjct: 753 KLPEVPFSQLLHLDERGIAKIGSWVEEGTILIGKITPIKKKSLIPHEKLLYDIIGKKTPT 812 Query: 913 VKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 +DSSLR P G++G +I V++ + + Sbjct: 813 TRDSSLRAPKGLTGRIIHVEILETKNLPPE 842 Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 138/389 (35%), Positives = 208/389 (53%), Gaps = 43/389 (11%) Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 ++ ++ +E I + G + +L+ +K +P ++ L + + + Sbjct: 756 EVPFSQLLHLDERGIAKIGSWVEEGTILIGKITPIKKKSLIPHEKLLYDIIGKKTPTTRD 815 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 L ++ + + PG V +Y+A KR+IQ GDK++GRHG Sbjct: 816 SSLRAPKGLTGRIIHVEILETKNLPPESLFEGPG---RVHIYIAEKRKIQVGDKISGRHG 872 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 NKG+ISKI P +DMP+ +GTPVD+VLNPLGVPSRMN+GQILE LG+A + + Sbjct: 873 NKGIISKILPRQDMPFLPDGTPVDMVLNPLGVPSRMNVGQILECLLGLAGIFLNQQYKIT 932 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 + G + + + S + + + Sbjct: 933 PFDE--------------KYGPEASRSLVFSKLYEARLKTGQK----------------- 961 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 L + G+I+L+DGR G+ F++ T+G Y+LKL HLVDDK+HARSTG Y Sbjct: 962 --------WLFNPNFPGKIQLFDGRNGKCFDQHTTIGQAYILKLVHLVDDKIHARSTGPY 1013 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDG 1311 SLVTQQPL G+++ GGQR GEMEVWALE +G+AY LQE++T+KSDD GR ++ I+ Sbjct: 1014 SLVTQQPLRGRSKHGGQRLGEMEVWALEGFGSAYILQELITIKSDDTKGRHQVINAILK- 1072 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELE 1340 N + G PE+F VL+KE++SL ++I + Sbjct: 1073 NKSISLGTPEAFKVLIKELQSLCLDIIVY 1101 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 86/360 (23%), Positives = 148/360 (41%), Gaps = 37/360 (10%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P + IQ +SF +++ GL ++ PI + N EL + Y+L P F Sbjct: 3 LPDFIEIQRNSFNALLKK------GLIKEIKNRSPITNIKKNIELFFYPELYQLNPPNFT 56 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + ++ TY+ L + ++LV T K IK Q V + PLMT G F+ING+ Sbjct: 57 NKTAILKAKTYACKLYIPVQLV-------NNTSKKIKTQWVLLTNFPLMTKRGHFIINGS 109 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R+I++Q+ RSPG+++ K K Y A +I +RG+WL E D K ++ R+ + Sbjct: 110 PRIIINQIIRSPGIYYQEVFDKKK---KRKYYADLISFRGTWLRLEIDKKKAIWARMKKT 166 Query: 202 RKLPATIILRALNYTTEQILDLF----FEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 K+ I L+A+ T + I F K F +N E + L E + Sbjct: 167 PKISILIFLQAMGLTNQLIFHSIEHSDFLKNSFSDEENLTTTEEALKLLYSEINP--KKE 224 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPV-EYIAGKVVAKDYIDESTGELICAANME 316 + G++ R D+ + G ++K + +++ A N Sbjct: 225 ETSIKSSMGQKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYL 284 Query: 317 L-------SLDLLAKLSQSGHKRIETLFTNDLDHG-----PYISETLRVDPTNDRLSALV 364 + +D + L + + N + G I E L+ + N L L+ Sbjct: 285 IKLEHGFGKIDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKKNRKNIILQNLI 344 >UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEK8_PEDMN Length = 1157 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 258/683 (37%), Positives = 376/683 (55%), Gaps = 55/683 (8%) Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + L+ LL + K + L + D LSAL I + Sbjct: 198 SQRTILAKSLLPYEQKGKTKTLPKLVKAQNPLLLVRRHPVSQDTALKVLSAL--IQARTK 255 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 E + F + YDL +GR++ N+ L+ +DI + Sbjct: 256 KEILVNSEMGKKFLMKKFRNPRSYDLGFIGRLRLNKRFGLSIATSYRQLTAEDIFHSVNL 315 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM--- 488 LI + G +DDIDHL NRR+RS+GE+ + Q + L+R+E+ +++R S + + Sbjct: 316 LISVSQGVASLDDIDHLENRRVRSIGELLQIQLGLALLRLEKMIRDRSSFLLENNVSSVA 375 Query: 489 --PQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 + I+ K ++ A++EFFGSS LSQF+DQ NPL+E+THKRR+++LGP G++RE AG Sbjct: 376 KDIRSFISTKALNGAMREFFGSSPLSQFLDQTNPLAELTHKRRLTSLGPSGVSRETAGMA 435 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IH 604 VR +HP+HYGR+CPIETPEG N GL+NSL+VY++ ++ GF+++P+ + +G + E + Sbjct: 436 VRGIHPSHYGRICPIETPEGQNAGLVNSLTVYSRVDQNGFIQSPFYLLNNGQIQKEANLT 495 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 +LSA +E + I + + + G D + R E R +D + S Q++SV Sbjct: 496 FLSAKDEMSKTIIPGDIHFNSLGFIENDSLPSRKNQEFVRQQRGNIDLIATSPLQMISVA 555 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 SLIPFLEHDDANRALMG+NMQRQAVPTL A++P VGTG+E + D G + G V Sbjct: 556 TSLIPFLEHDDANRALMGSNMQRQAVPTLYAERPRVGTGLESKIVTDIGHIVQTRWSGYV 615 Query: 725 QYVDASRIVIKVN----------------------------------------------E 738 YVD+ +I+I+ + Sbjct: 616 SYVDSQKIIIQSFVKHSETFLPTQSIRFLETVSTSKKYSSSLKTDSIEKVFLKSKPGELK 675 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 ++ E Y L Y+ SNQ+T Q P VS G+ VE GD+LADG +++ GELALG Sbjct: 676 TKLEEYEFKTVEYLLENYSGSNQSTFFVQKPIVSEGDWVEAGDILADGSASEKGELALGH 735 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 N+ VA++PW G+NFED+IL+SER+V +D +T++HI++ R+TK G E+IT +P+V Sbjct: 736 NLLVAYIPWEGFNFEDAILISERLVTQDLYTSLHIEKYEMEIRETKFGLEKITNKLPDVR 795 Query: 859 EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 + L LD GIV G V GDILVGKVTP + L+P E+LL I G+ V+DSSL Sbjct: 796 KKDLKNLDAQGIVKPGTWVQEGDILVGKVTPIRKKPLSPHERLLYDIVGKINPTVRDSSL 855 Query: 919 RVPNGVSGTVIDVQVFTRDGVEK 941 RVP G V+D+Q+ D K Sbjct: 856 RVPRGTQARVLDIQIIYSDEKTK 878 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 133/299 (44%), Gaps = 28/299 (9%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS- 72 F ++L P L IQ SF KF+E G+ + PI S + ++ + Sbjct: 2 SFNNISKLLT-PDFLEIQRVSFVKFLES------GIINEIKRRNPITSSAKEYQIFFYPE 54 Query: 73 -YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 Y+L P F ++ + G +Y++ L + ++L +IK Q V +G +PL+T Sbjct: 55 AYQLEAPEFSPKDALLYGKSYASRLFLPVQLT-------NQVTGEIKFQWVLLGTLPLLT 107 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 G F++NG RV+++QL RSPGV++ + S + ++ A I RG+WL E D Sbjct: 108 KRGHFILNGCPRVVINQLIRSPGVYYQK---RLDSQKRDIFYADFICERGAWLRIEMDTS 164 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR----DNKLQMELVPERLR 247 ++ R+ R K+P I+L+++ + + I ++ I + K + + +P+ ++ Sbjct: 165 QRIWARMKRTPKIPVLILLQSMGMSLQTIFSSTSQRTILAKSLLPYEQKGKTKTLPKLVK 224 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 + + + + + L + K + + K + K + + + Sbjct: 225 AQNPLLLVRRHPVSQDTA-----LKVLSALIQARTKKEILVNSEMGKKFLMKKFRNPRS 278 >UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax=Ostreococcus tauri RepID=RPOB_OSTTA Length = 1088 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 279/819 (34%), Positives = 415/819 (50%), Gaps = 52/819 (6%) Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY 215 FF G++ S R I F KD F ++ ++ L Sbjct: 35 FFSPIVGQSLGSSSKRPTDRFIS-------VSFHSKDFYF----KKPHYTPQEAVQKLGT 83 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 ++ + + + L E +F + + +V V + R +++ Sbjct: 84 YKSSLIVPVHVYSKYLNLNATFPVAFCDLPLMTEHGTFILNGSPRVIVHQIVRCPGVYLK 143 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET 335 + V +++ + + G + + + + L G Sbjct: 144 PQFDKQGNRTHL-VSFLSAYGSWLRFETDKKGVVFAHIDNLRKVPVTVFLQALGFSMDTI 202 Query: 336 LFTNDLDHGPYISETLRV-DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDR 394 + L + + TL+ D A++ + + P P T N FF+ R Sbjct: 203 V--GALKYPEALDPTLKEVDWKLTTDEAILLLMSRLFPNRPATVLRGRKFLFNQFFNPRR 260 Query: 395 YDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE-VDDIDHLGNRRI 453 Y LS VGR + N+ L+ D + + L+ NG+ E +DDIDHL NRR Sbjct: 261 YSLSDVGRKRVNQKFRMRSKTKHLTLTPQDALAALDYLLRCENGETEFLDDIDHLKNRRA 320 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP------QDMINAKPISAAVKEFFG 507 R GE+ + QFR+GL R+ER + R+S ++ P +I + +++ +EFFG Sbjct: 321 RLAGELIQTQFRLGLNRLERVIYNRISDENILRKTPGALGSLNSLIRTQVLASVFQEFFG 380 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 S+QLSQFMDQ NPL+EITHKRR+S+LGPGGL R+RAG VR +HP++YGR+CPIETPEG Sbjct: 381 SNQLSQFMDQTNPLAEITHKRRLSSLGPGGLNRDRAGLIVRGIHPSYYGRICPIETPEGK 440 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE---IHYLSAIEEGNYVIAQANSNLD 624 N GL+ S++ + Q N+ GFLE+PY K+ T + LSA E + V+AQ + +L Sbjct: 441 NAGLVGSIATFTQINKNGFLESPYYKLISESNTPDRNGFFLLSAFYEEDTVVAQGDVDLS 500 Query: 625 EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 + R+K + + + +++++ + Q +S+ SLIPFLEHDDANRALMG+N Sbjct: 501 ------NFRIPTRNKSQFTENTVQEINFLGLCPIQFMSIATSLIPFLEHDDANRALMGSN 554 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI---------- 734 MQRQAV LR+++P VGTG+E V D G T VAK+ + YVDA RI Sbjct: 555 MQRQAVSLLRSERPFVGTGLEAHVTRDIGATIVAKQNSYISYVDAQRIDYFTPVIGDTNL 614 Query: 735 -----KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 ED + + LT Y RSNQ+TC+N P V VE GD LAD +T Sbjct: 615 IDYQNLTAEDVFASNQFKHNTIWLTSYQRSNQDTCLNHKPLVEANTWVEAGDCLADNAAT 674 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 GELALG+N+ + +MPW GYNFED++LVSER+V +D FT+IHI + + G E Sbjct: 675 AKGELALGRNILIGYMPWEGYNFEDAVLVSERLVYDDVFTSIHISRYEVSTARLREGQEY 734 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 T + LDE G+V IG V GD+LVGK++P+ ++ PE +LLRAIFG Sbjct: 735 FTNQVDRN-----QYLDEFGVVKIGTWVEAGDVLVGKISPQPDSDNDPESRLLRAIFGGV 789 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQV-FTRDGVEKDKRALE 947 A + K +S + +GVSG ++DV+ F R + ++E Sbjct: 790 ARNTKTTSYCLSSGVSGRILDVRCEFKRQTKNIEDESIE 828 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 164/477 (34%), Positives = 235/477 (49%), Gaps = 55/477 (11%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V V GD L T KGE L +L + + +D+ L VS + Sbjct: 655 LVEANTWVEAGDCLADNAATAKGELAL--GRNILIGYMPWEGYNFEDAVL-----VSERL 707 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 + VFT + + + + + + + Q L+ +I + AG V K Sbjct: 708 VYDDVFTSIHISRYEVSTARLREGQEYF-TNQVDRNQYLDEFGVVKIGTWVEAGDVLVGK 766 Query: 989 L------DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + D P R L + + + + E KR+ D+ Sbjct: 767 ISPQPDSDNDPESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDVRCEFKRQTKNIEDES 826 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 V VYL KRR+Q GDK+AGRHGNKG++S I P DMPY ++G +D+VLNPLG Sbjct: 827 IESTGS-VYVYLVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPYLQSGKALDMVLNPLG 885 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 VPSRMN+GQI E LG+AA + + + GA+V + Sbjct: 886 VPSRMNVGQIFECLLGLAANTLKQNFKVLPFDEMH--------------GAEVSRGFVYH 931 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 ++ + L + G+ ++DGRTG F+ Sbjct: 932 YLYKSRLLTQQK-------------------------WLFKPNSPGKSIVFDGRTGLNFD 966 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 +PVTVGY Y+LKL HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR GEMEVWALE +G Sbjct: 967 QPVTVGYPYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFG 1026 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AAY LQE+LT+KSDD+ GR + + +++ G + G+PESF VL+ E+R L +++ + Sbjct: 1027 AAYVLQELLTIKSDDMIGRNRAFMSMIRGTLLPKSGIPESFKVLVSELRGLCLDMSI 1083 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 28/234 (11%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-----SYSGNSELQYV------- 71 +P L Q DSF+ F+E G+ PI S S +++ Sbjct: 10 LPNFLDSQRDSFRYFLE------TGIREELDFFSPIVGQSLGSSSKRPTDRFISVSFHSK 63 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 + +P + QE + TY + L V + +Y + V ++PLMT Sbjct: 64 DFYFKKPHYTPQEAVQKLGTYKSSLIVPVH--VYSKYLNLNATF-----PVAFCDLPLMT 116 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 ++GTF++NG+ RVIV Q+ R PGV+ K G + + GSWL FE D K Sbjct: 117 EHGTFILNGSPRVIVHQIVRCPGVYLKPQFDKQ---GNRTHLVSFLSAYGSWLRFETDKK 173 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 +F ID RK+P T+ L+AL ++ + I+ + ++ +L + Sbjct: 174 GVVFAHIDNLRKVPVTVFLQALGFSMDTIVGALKYPEALDPTLKEVDWKLTTDE 227 >UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Tax=Bacteria RepID=RPOB_MYCPN Length = 1391 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 279/751 (37%), Positives = 434/751 (57%), Gaps = 83/751 (11%) Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 + L+ R + +++ A G+ V + RIT R ++ D+ L Sbjct: 362 DECPENSYHALLCSRFFRQR-RYNLSAAGRYKVSRKLRITERIYQKTLACDLHL------ 414 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 GEL+ L + + K+ Q+ + ++ + Sbjct: 415 --------------KNGELLLKKGTLLVKEEIDKIKQA----------AQNNQIDFVQKI 450 Query: 351 -LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L D + LS +Y + ++ + D +D+S N + Sbjct: 451 KLTTDGSAVNLSPESLLYESLD----------------VYVNNDNFDVSVPVVGIHNDND 494 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 L + ++ D I + +I+I + G+ DDIDHLGN+R++ + E+ ++ G+ Sbjct: 495 LNKA------ITLSDFIASISYVINIPSAIGKYDDIDHLGNKRVKLINELISSRLESGIT 548 Query: 470 RVERAVKERLSLGD-------------------LDTLMPQDMINAKPISAAVKEFFGSSQ 510 R+ER +KE+L++ D L + +IN+KPI +++FF + Q Sbjct: 549 RMERFLKEKLTIADGVNRGQQINEEGQVIEQAEKKELTIKSLINSKPIQIVIRDFFNTHQ 608 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 L+QF+D NPLSE+++KRRISA+GPGG++RE ++RDVH + YGR+CPIETPEG NIG Sbjct: 609 LTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIETPEGMNIG 668 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS--NLDEEGH 628 LI SL+ +A+ +E GFL PYRK+ +GV+TDE+ YL+A+ E ++IA+ +S N+DE Sbjct: 669 LIMSLASFAKIDENGFLMAPYRKIKNGVITDEVEYLTALREDEHIIAEISSLVNIDENNK 728 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 ++ + R + L+ ++DY+DV+ QVVS+G+SLIPFLE+DD+ RALMG NMQRQ Sbjct: 729 ILDKEIIGRYRSMQGLYDPSKIDYIDVAPHQVVSIGSSLIPFLENDDSARALMGTNMQRQ 788 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 A P ++ P+VGTG E +A DSG+T +A G V+YVD S+I I+ + E + Sbjct: 789 AYPLIKPYAPVVGTGQEYKIARDSGLTMLAPCSGTVKYVDNSKITIESDSGEQH------ 842 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 +L K+ RSNQNTC N +P V G+ V + +V+ADGP+ + EL+LGQN+ VAF WN Sbjct: 843 -TLDLIKFERSNQNTCYNHVPLVEKGQRVTKDEVIADGPAVNKSELSLGQNVLVAFTTWN 901 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 GYN+ED+I++SER+V++D T++ I E TK G E+IT DIPNV +A LDE+ Sbjct: 902 GYNYEDAIVISERLVKDDVLTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDEN 961 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 GI+ +GAEV GD+LVGKV+PKG+ +++PEEKL +AIF E +V+DSSL++P+G G V Sbjct: 962 GIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGDGIV 1021 Query: 929 IDVQVFT-RDGVEKDKRALEIEEMQLKQAKK 958 V+ F+ +G E + +E+ ++ + Q +K Sbjct: 1022 SCVKRFSIANGNELNDGVIEMIKVYVVQKRK 1052 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 172/430 (40%), Positives = 244/430 (56%), Gaps = 27/430 (6%) Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 V + + + + A K +E I+ G + VLV +++ Sbjct: 930 VAQCLSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLVGKVSPKGQVEVS 989 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 P ++ + + + + L + KR I G++L GV++++KV Sbjct: 990 PEEKLFKAIFPESVQNVRDSSLKLPHGGDG----IVSCVKRFSIANGNELNDGVIEMIKV 1045 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 Y+ KR+IQ GDK+AGRHGNKGVISK+ P+ DMP+ E+GTPVDI+LNPLGVPSRMNIGQI Sbjct: 1046 YVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPHLEDGTPVDILLNPLGVPSRMNIGQI 1105 Query: 1113 LETHLGMAAKGIGDKI--NAMLKQQQEVAKLREFIQRAYDLG---ADVRQKVDLSTFSDE 1167 E HLG AA + ++ +A ++ A E Q Y L ++ ++ DE Sbjct: 1106 FEMHLGYAAHNLAKRMLISACFDDKKAQALSTEINQPQYKLDRLITGLKAQITNRGLKDE 1165 Query: 1168 EVMRLAENLRKG---------------MPIATPVFDGAKEAEIKELLKLGDLP---TSGQ 1209 + N +ATP+F G ++++++ L T G+ Sbjct: 1166 QAALAQLNNGDIALVLKEIGMSFDDLHFKVATPIFQGVNFQDLQDIMDEAGLKPAETHGK 1225 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 +L DGRTG FE+P+++G MY++KLNH+VDDK+HAR+ G YS +TQQPLGGK+Q GGQR Sbjct: 1226 FKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIHARAVGPYSKITQQPLGGKSQNGGQR 1285 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 FGEMEVWALEAYGAAY LQE+LT+KSDDV GR K Y IV G EPG+PESF +L KE Sbjct: 1286 FGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKAYAAIVKGAAFPEPGIPESFKLLTKE 1345 Query: 1330 IRSLGINIEL 1339 ++ L +++ Sbjct: 1346 LQGLALSVSF 1355 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 87/430 (20%), Positives = 159/430 (36%), Gaps = 58/430 (13%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 R+ +GK P L IQ+ S+Q F++ D LE + FPI+S + + + Sbjct: 17 TRRYYGKIATDFVQPNLADIQIRSYQTFLDHD------LENLIAAYFPIKSPNDRYTINF 70 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLV------IYEREAPEGTVKDIKEQEVYM 124 R P + + + TY + L L+ I + + V++ Sbjct: 71 KGLRRTAPERNEAQSRSESKTYEIGIYADLELIDSATGTIKKPRKSKKNSATSSVDGVFL 130 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVL---YNARIIPYR 180 +PL+T +G F++NG E+ +++Q+ RSPG++ + K SS K + Y ++P Sbjct: 131 TNLPLITRDGVFIVNGIEKFVIAQITRSPGIYMLTKSQLKLSSSRKRVQEGYVCEVLPAN 190 Query: 181 GSWLDFEFDPKDNL---FVRIDRR-------RKLPATIILRALNYTTEQILDLFFEKVIF 230 GS + K + FV+I R + P T +L+A + ++IL +F Sbjct: 191 GSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGMSGKEILKVF------ 244 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 + + L E + +++ K+ ++ Sbjct: 245 -KNNEFITRSLEAEVYNAKDFLNNVDPE-------------------IKNLLREFRDGKT 284 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + K +A D S E AK + ++E D + + Sbjct: 285 DLRRKGIASDQKIRSLVSDYVLLEKEHKALSEAKPNDPKVGQLEA------DMDELMDKI 338 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + + L R + + + +L + FF + RY+LSA GR K +R L Sbjct: 339 ITERAAKHIVHELSISLRGLENTDECPENSYHALLCSRFFRQRRYNLSAAGRYKVSRKLR 398 Query: 411 REEIEGSGIL 420 E L Sbjct: 399 ITERIYQKTL 408 >UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 Tax=Streptophyta RepID=RPOB_VITVI Length = 1070 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 254/757 (33%), Positives = 418/757 (55%), Gaps = 20/757 (2%) Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR-QLEKDDVKLI 285 K ++++ + + +P L + + ++ + + + + R +L+ + + + Sbjct: 89 KTSRDMQEQTIFIGNIP--LMNSLGTSIVNGLYRIVINQILQSPGIYYRSELDHNGISVY 146 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + + ++ + ++S+ +L+ S + I + Sbjct: 147 TGTIVSDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILE-NVCYPEIFL 205 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + SA++E Y+ G+P E+ + FF + R +L +GR Sbjct: 206 SFLNDKEKKKIGSKESAILEFYQQFACVGGDPVFSESLCKELQKKFF-QQRCELGRIGRR 264 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 NR L + + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++Q Sbjct: 265 NINRRLNLDIPQNNTFLLPQDILAAADHLIGMKFGMGILDDMNHLKNKRIRSVADLLQDQ 324 Query: 464 FRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 F + L+R+E V+ + L PQ+++ + P++ + FFG LSQ +D+ NPL Sbjct: 325 FGLALIRLENVVRGTICGAIRHKLIPTPQNLVTSTPVTTTYESFFGLHPLSQVLDRTNPL 384 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ++I H R+ S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SL+++A+ Sbjct: 385 TQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARI 444 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 +G LE+P+ ++++ + YLS + Y++A NS +G E +V R + E Sbjct: 445 GHWGSLESPFYEISERSKKVRMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQE 504 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + +QV + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K +VG Sbjct: 505 FLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVG 564 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 TG+ER A+DSGV +A+ G + Y D +I++ N D + L Y RSN+ Sbjct: 565 TGLERQAALDSGVPVIAEHEGKIVYTDTDKIILSGNGDTLS--------IPLVMYQRSNK 616 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 NTC++Q V G+ +++G +LADG +T GELALG+N+ VA+MPW GYN ED++L+SER Sbjct: 617 NTCMHQKAQVRRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISER 676 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 +V D +T+ HI++ + T GPE IT IP++ L LD++GIV +G+ V GD Sbjct: 677 LVYGDIYTSFHIRKYEIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGD 736 Query: 882 ILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 ILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + G Sbjct: 737 ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGG 796 Query: 940 EK-DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 + + + Q ++ K + G+ S+I Sbjct: 797 SSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKI 833 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 142/426 (33%), Positives = 210/426 (49%), Gaps = 58/426 (13%) Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 +S + I V ++ + +E L+ K+ I+ G + Sbjct: 684 TSFHIRKYE----IQTHVTSQGPERITNKIPHLEAHLLRNLDKN-----GIVILGSWVET 734 Query: 976 RAVLVAGGVEA--EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 +LV ++ P DR L L + ++ L + + K+ Sbjct: 735 GDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKK 794 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 G P + ++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G P Sbjct: 795 ----GGSSYNP---ETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRP 847 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VD+V NPLGVPSRMN+GQI E LG+A +L + +A E ++ Sbjct: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAG--------GLLDRHYRIAPFDEKYEQ------ 893 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + +K+ S + + + G+ R++ Sbjct: 894 EASRKLVFSELYEASKQTANP-------------------------WVFEPEYPGKSRIF 928 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTG+ FE+PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEM Sbjct: 929 DGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEM 988 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRS 1332 EVWALE +G A+ LQEMLT KSD + R ++ + G P PESF +L++E+RS Sbjct: 989 EVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPNPEDAPESFRLLVRELRS 1048 Query: 1333 LGINIE 1338 L + + Sbjct: 1049 LALELN 1054 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 113/233 (48%), Gaps = 19/233 (8%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SY 73 G + +P IQ + F +FI+Q GL I+ E Q +Y Sbjct: 4 GGNEGMSTIPGFNQIQFEGFCRFIDQ------GLTEELYKFPKIEDTDQEIEFQLFVETY 57 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 +L EP+ ++ +TYS+ L V L+ T +D++EQ +++G IPLM Sbjct: 58 QLVEPLIKERDAVYESLTYSSELYVSAGLIW-------KTSRDMQEQTIFIGNIPLMNSL 110 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GT ++NG R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D K Sbjct: 111 GTSIVNGLYRIVINQILQSPGIYYRSE---LDHNGISVYTGTIVSDWGGRLELEIDRKAR 167 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMELVPER 245 ++ R+ R++K+ ++ A+ +IL+ + ++ ++K + ++ + Sbjct: 168 IWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKE 220 >UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax=Embryophyta RepID=RPOB_ANGEV Length = 1070 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 253/704 (35%), Positives = 394/704 (55%), Gaps = 17/704 (2%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHI-RQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 L +F I +V + + R + +L+ + + + G + + Sbjct: 106 LMNSQGTFVINGIARVVINQILRSPGIYYDSELDHNGNSIYTGTIISDWGGRFKSEIDGK 165 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + + N ++S+ +L L G + L + + + A+V Sbjct: 166 KRIWVRLSKNRKVSIIIL--LLAMGLNMNDILKNVRYPNIFLRLFQRQAENIQSYEDAIV 223 Query: 365 EIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 E+Y+ + G ++ + FF + +++L GR N+ L + +L Sbjct: 224 ELYKNLYSAGGNLVFSDSICKELQTKFF-QQKFELGQFGRRNLNKKLNLDVPGNEHLLLP 282 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL- 481 D++ + LI + G G +DDID L NRR+RSV ++ Q + L R+E +++ + Sbjct: 283 QDLLAAVDYLIGVNYGIGTLDDIDDLKNRRVRSVADLLREQLGLALDRLEILIRQTIHTV 342 Query: 482 -GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 + P+ +I + P++ ++FFGS LSQF+DQ NPL+E+THKRR+S+LGPGGLTR Sbjct: 343 ARRKRLVTPKGLITSAPLTTIFQDFFGSHSLSQFLDQTNPLAELTHKRRLSSLGPGGLTR 402 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 A F+VRD++P+HYGR+CPIET EG N GLI SL+++A+ N+ G L +P+ K++ + Sbjct: 403 RTASFQVRDINPSHYGRICPIETSEGMNAGLIASLAIHAKVNDRGSLLSPFYKISKTLGE 462 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + I YLS+ E+ Y IA N+ + E R + E + Q+ + + Q Sbjct: 463 EHIVYLSSEEDEYYRIATGNTLSLDREIREERATPARYRQEFLTIAWKQIHFRSIFPFQY 522 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 S+G SLIPFLEH+DANRALMG+NMQRQAVP + +K +VGTG+E +A+DSG V+ + Sbjct: 523 FSIGTSLIPFLEHNDANRALMGSNMQRQAVPLSQPEKCIVGTGLESQIALDSGSVVVSNQ 582 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G + Y+D I I + E +DI ++ Y RSN NTCI+Q P VS GE + +G Sbjct: 583 DGQIAYLDGETISI------LLQNEKTVDIKSII-YERSNNNTCIHQRPVVSQGERLRKG 635 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +LADG +T GELALG+N+ VA+MPW GYNFED++L+SER++ ED +T+ HI+ Sbjct: 636 QLLADGTATVGGELALGRNILVAYMPWEGYNFEDAVLISERLIYEDIYTSFHIERYEINI 695 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT--PE 898 T GPE+IT +IP++ L LD +G+V G+ V GD+LVGK+TP+ PE Sbjct: 696 YTTSQGPEKITKEIPHLDSYVLRHLDNNGLVVPGSWVETGDVLVGKLTPQEAENSLRVPE 755 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 KLL+AI G + ++ ++S L+VP G G VIDV+ + + Sbjct: 756 GKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIYDEDTLPN 799 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 149/417 (35%), Positives = 222/417 (53%), Gaps = 59/417 (14%) Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVEAEK 988 ++T +E+ + + ++ K++ L+ L+ + + G V K Sbjct: 682 IYTSFHIERYEINIYTTSQGPEKITKEIPHLDSYVLRHLDNNGLVVPGSWVETGDVLVGK 741 Query: 989 LDK--------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 L +P + L+ + + L + + + Sbjct: 742 LTPQEAENSLRVPEGKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIY-------DE 794 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D P + +V VY+ KR+IQ GDK+AGRHGNKG++SKI P +DMPY ++GTPVD++L+P Sbjct: 795 DTLPNIANMVHVYILQKRKIQVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMILSP 854 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 LGVPSRMN+GQI E LG+A +LK+ + E +R + +K+ Sbjct: 855 LGVPSRMNVGQIFECLLGLAG--------DILKKHYRITPFDERYER------EASRKLV 900 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 S + ++EA I L + G+ RL DGRTG+ Sbjct: 901 FSELH----------------------EASQEAAIPWLFE---PDHPGKSRLIDGRTGDI 935 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 FE+PVT+G YM+KL H VDDK+HARS+G Y+LVTQQPL G+++ GGQR GEMEVWALE Sbjct: 936 FEQPVTIGKAYMMKLIHQVDDKIHARSSGPYALVTQQPLRGRSRGGGQRVGEMEVWALEG 995 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 +G +Y LQEMLT+KSD + R+K+ +IV G +P +PESF +L++E+RSL +N Sbjct: 996 FGVSYILQEMLTIKSDHIPARSKLLGSIVTGKSIPKPNTVPESFRLLVRELRSLAVN 1052 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 146/387 (37%), Gaps = 41/387 (10%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLG 76 ++ +P IQ + FQ+FI QD L + I+ E + YRL Sbjct: 7 KKMFVLPEFGRIQFEGFQRFIHQD------LVEELTNFPKIEDIDQEVEFRLFGERYRLT 60 Query: 77 EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTF 136 EP ++ + TYS+ L V +L+ I+ Q V+ G IPLM GTF Sbjct: 61 EPCIKERDAVYQSFTYSSDLYVPAQLMRRRN-------GRIQRQTVHFGSIPLMNSQGTF 113 Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 VING RV+++Q+ RSPG+++DS+ +G +Y II G E D K ++V Sbjct: 114 VINGIARVVINQILRSPGIYYDSE---LDHNGNSIYTGTIISDWGGRFKSEIDGKKRIWV 170 Query: 197 RIDRRRKLPATIILRALNYTTEQILD----------LFFEKVIFEIRDNKLQMELVPERL 246 R+ + RK+ I+L A+ IL LF + +EL Sbjct: 171 RLSKNRKVSIIILLLAMGLNMNDILKNVRYPNIFLRLFQRQAENIQSYEDAIVELYKNLY 230 Query: 247 -RGETASFDIEANGKV---YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 G F ++ + ++ + R L K + + + +D + Sbjct: 231 SAGGNLVFSDSICKELQTKFFQQKFELGQFGRRNLNKKLNLDVPGNEHLL----LPQDLL 286 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + + +LD + L + + L L E L + Sbjct: 287 AAVDYLIGVNYGIG-TLDDIDDLKNRRVRSVADLLREQLGLALDRLEILIRQTIHT---- 341 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLF 389 + R++ P T ++F++ F Sbjct: 342 VARRKRLVTPKGLITSAPLTTIFQDFF 368 >UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax=Bigelowiella natans RepID=RPOB_BIGNA Length = 1099 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 332/1179 (28%), Positives = 541/1179 (45%), Gaps = 138/1179 (11%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 LD + K L + LP + + +L + +D + L Sbjct: 34 LDITKNKKKLLVYPNLFQLNLPTYTCNECVITSKTYNCELVIPIRLISYKDEIEWITLTN 93 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + +F + +V + + R + + ++ + IA + Sbjct: 94 IPIMTNKCNFITNGSPRVIMSQITRAPGIYYHKENENTY-----YADIIAERGNWLRIEI 148 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 + + + L L G + + L P ++ + + AL Sbjct: 149 DKKNNIWMKVKKVPKVPALMFLQALGVTKSNLI---KLLKYPIPNQNHNLGNFKSQKEAL 205 Query: 364 --VEIYRMMR---PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR-EEIEGS 417 +E+Y + + ++F+ F + YDL GR++ N+ EE Sbjct: 206 EKIELYSQLESSINSRNLKNQNKITIFDR-FMNPKYYDLGTRGRIQINKKFNNIEETIQH 264 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 L+ D I + L+ I+ E DDID+L N+R++ GE+ ++QF +G++R+++ VK+ Sbjct: 265 STLTSKDFILAVHFLLKIKYKIEETDDIDNLKNKRVKIAGELIQSQFGIGILRLQKYVKD 324 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 +L + L ++ ++ PI+ + EFFG + LSQFMD+ NPL+ +THKRR+S+LG GG Sbjct: 325 KLG-NIKNNLHLTNIFSSTPINTTLAEFFGVNPLSQFMDEVNPLATLTHKRRLSSLGIGG 383 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 + R+ A +R +HPT YGR+CPIETPEG N GL+NS +++A+ N G +ETP+ +V +G Sbjct: 384 VNRDTATLTIRSIHPTLYGRICPIETPEGKNAGLVNSFALFAEINSEGLIETPFFRVCNG 443 Query: 598 VVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 + E I+YLSA +E I + G ++ + R K + S+ +VD++ + Sbjct: 444 RILYEMGINYLSANQEDKSNIVPFDIKKSRIGFLSKNKIAARIKQQFKEVSKKKVDFISI 503 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 S Q++SV SLIPF+EH+DANR LMG+NMQRQAVP L+ + LVGTG+E + D Sbjct: 504 SQLQMLSVATSLIPFMEHNDANRVLMGSNMQRQAVPLLKTECCLVGTGLETKIFFDLQDN 563 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 + G + Y+ +I I +E + TCI Sbjct: 564 VKSPPNGFISYLSLKKITISNIRNEHKSFNFKSNPLETI--------TCIKSK------- 608 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 S + L YN +D + S+ ++ I Sbjct: 609 ------------SRNFNRLK--------------YNLKDLLTNSKE--------SLKITN 634 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 R+ K+ + N G ++++L + G + + L+ G + Sbjct: 635 YMSYVREQKIQYYIKQYNSSNQGTCSVNRLTLN----EGQFIIKKNPLIS-----GLSSC 685 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ-----VFTRDGVEKDKRALEIEE 950 E L + +F S + N V++ Q ++T +EK + ++ + Sbjct: 686 RNELALGKNLFVGYI------SWKGYNFEDAIVLNEQLVINNIYTSTHLEKFETEIKKNK 739 Query: 951 MQLKQAKKDLSE----ELQILEAGLFSRIR------AVLVAGGVEAEKLDKLPRDRWLEL 1000 + +D+ + L+ +I +LV + E P + L Sbjct: 740 ENSEIITRDIKNISFLNKKNLDKNGIIKIGSRVFSDDILVGKLLPIETRILSPYRKLLYE 799 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 L + + L + + KI + ++ LK +K++L R I Sbjct: 800 ILQKQNDHYRNTSLRVPKYKRGRITFVDYIKDKGKIKKKTEILKD-LKTIKIHLMQNRLI 858 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 Q GDK++GRHGNKGVISKI I++MPY +G P+DI+LNPLGVPSRMNIGQ+LE LG++ Sbjct: 859 QIGDKISGRHGNKGVISKILKIQEMPYLNDGIPLDILLNPLGVPSRMNIGQVLECLLGLS 918 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 + + + + G +V + S + Sbjct: 919 CFYLQRRFKVIPFDE--------------SFGFEVSRNFIYSNLYFSNIKTGN------- 957 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 LL G+ R++D +G F++P+T+G Y+LKL HLV+ Sbjct: 958 ---------------NWLLHPY---YPGKNRIFDSYSGLPFDQPITIGKAYILKLIHLVE 999 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 +K+HARSTGSYSLVTQQPL GK++ GGQR GEMEVWALE YGAAYTL E+LTVKSDD+ Sbjct: 1000 EKVHARSTGSYSLVTQQPLKGKSKKGGQRVGEMEVWALEGYGAAYTLHEILTVKSDDIKS 1059 Query: 1301 RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 R K+ +I++ ++ G E+F VL++E++SL +NI+ Sbjct: 1060 RQKVLTSILNSE-TIKFGTTETFKVLIRELQSLCLNIQF 1097 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 137/351 (39%), Gaps = 38/351 (10%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 L P LL +Q SF F+ +YG++ + + I + ++L P Sbjct: 4 TPLFFPNLLKLQRKSFLTFL------KYGIKKEIKKL-DITKNKKKLLVYPNLFQLNLPT 56 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 + EC I TY+ L + +RL+ Y+ E + + + IP+MT+ F+ N Sbjct: 57 YTCNECVITSKTYNCELVIPIRLISYKDEI----------EWITLTNIPIMTNKCNFITN 106 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G+ RVI+SQ+ R+PG+++ H + Y A II RG+WL E D K+N+++++ Sbjct: 107 GSPRVIMSQITRAPGIYY-------HKENENTYYADIIAERGNWLRIEIDKKNNIWMKVK 159 Query: 200 RRRKLPATIILRALNYTTEQILDLF---FEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 + K+PA + L+AL T ++ L + + K Q E + + I Sbjct: 160 KVPKVPALMFLQALGVTKSNLIKLLKYPIPNQNHNLGNFKSQKEALEKIELYSQLESSIN 219 Query: 257 ANGKVYVEK--------GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 + K + R + + K + + +KD+I Sbjct: 220 SRNLKNQNKITIFDRFMNPKYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILA--VH 277 Query: 309 LICAANMELSL-DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + ++ D + L K L + G + D + Sbjct: 278 FLLKIKYKIEETDDIDNLKNKRVKIAGELIQSQFGIGILRLQKYVKDKLGN 328 >UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Scenedesmus obliquus RepID=RPOB1_SCEOB Length = 726 Score = 625 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 224/738 (30%), Positives = 364/738 (49%), Gaps = 49/738 (6%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P L+ IQ F +E+ G+ PI + E+ + YRL +P + Sbjct: 8 IPDLVEIQRQGFFYLLEK------GIIEEISKRNPITCFEKQIEIFFYPQYYRLTKPFYS 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 +Q+ +Y + + ++L + K I + + + PLMT+ G F++NG+ Sbjct: 62 IQQAIFYKKSYVSKFYIPVQLT-------DRKTKRIFLKWILLAHFPLMTNRGHFLLNGS 114 Query: 142 ERVIVSQLHRSPGVFFDSD--------KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 RVI++QL RSPG++F + + S+ + A II +G+WL E D + Sbjct: 115 ARVIINQLVRSPGIYFRENMHEIFSNKWSEKPSTTFRRFYADIICLKGTWLRIECDKDFS 174 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI----FEIRDNKLQMELVPERLRGE 249 ++ ++ + K+P L + + + IL+ ++ + F K+Q + L+ Sbjct: 175 MWAKMKKGPKIPLLWFLLGMGLSEKYILNSVYKPMNLLQSFTKEMEKMQKSKSSKELKYP 234 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVK----LIEVPVEYIAGKVVAKDYIDES 305 S +A ++ + T R L+K++ K + I KVV D+ Sbjct: 235 YISSTKQAWEQIQKLFKLKKTLRKFSFLKKNEEKPKTFIFGQSSTKIEAKVVFSDF---- 290 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 A N + + S ++T F E + + T ++ Sbjct: 291 -----AAFNNSVKRENTVFASNDDTFLVQTSFETKKKKNTRKKENFQKNKTQKTTKLSLQ 345 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + E F N F + YDL GR N+ L L+ D+ Sbjct: 346 NKEKRVASKLEAYELGRKWFANKFMNPRTYDLGKQGRWLINKKLGLTIPLEQTTLTALDV 405 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS----- 480 + L+ I +G E+DDIDHL N+R+R+ GE + F +GL+R+E++++ +L+ Sbjct: 406 LTATDSLMKIEDGFFEIDDIDHLKNKRVRTAGEALQEIFSIGLIRLEKSIRLKLNGNGQQ 465 Query: 481 --LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +++ +PI+ A +EFFG+ LSQFMDQ NPL+EITHKRR+S+LGPGG+ Sbjct: 466 SFFQKTSFFNFDSLMSTRPINGAFREFFGTHPLSQFMDQINPLAEITHKRRLSSLGPGGV 525 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+ A +R +HP+HYGR+CPIETPEG N GL+NS++ Y++ + +G+LE+P+ KV G Sbjct: 526 SRDTATLAIRGIHPSHYGRICPIETPEGKNTGLVNSITTYSKISFHGYLESPFYKVYKGQ 585 Query: 599 VTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 V + YLS ++ ++ A + NL G + + R ++ M VS Sbjct: 586 VQRNLGVFYLSPDKDDHFQTATPDLNLTPLGFLPKKPIPVRIGKRFVRMKTHKLALMGVS 645 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 Q++SV S IPFLEHDDANRALMG+NMQRQAVP +R ++PL+GTG+E V DSG Sbjct: 646 PLQMISVATSFIPFLEHDDANRALMGSNMQRQAVPLIRPERPLIGTGLEARVVSDSGHAI 705 Query: 717 VAKRGGVVQYVDASRIVI 734 +AK G + Y S+I + Sbjct: 706 LAKTSGYIVYSSGSKIYL 723 >UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae RepID=D1J787_ECTSI Length = 1139 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 306/902 (33%), Positives = 458/902 (50%), Gaps = 65/902 (7%) Query: 213 LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 ++ +I+ + R ++ +P L E +F +V + + R Sbjct: 88 MSLKKNEIIKKGIVQPEDFSRKERVFFGEIP--LLTEKGTFIFNGCERVIISQIIRSPGV 145 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 + +Q+ K+ E + G + + + + + + + L + Sbjct: 146 YYKQIIKEKKIFYEGTIISKYGSWLT---FELEYNLIWVKFDKQYKIPINWFLVGLSLEE 202 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP--------PTREAAESL 384 E T + S + D++++ E +++ T + L Sbjct: 203 SEVYQTVQNFNFLIKSLSAIRLAIFDKMTSKSEKNKVVDKENHEAYNRNILLTVFRVQEL 262 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 + YDL VGR+K N+ L L+ DI+ V+ KLI I ++DD Sbjct: 263 INQRLLDKGVYDLGEVGRIKLNKKLDIGLPLSRRTLTSLDILKVIDKLIHISFHNEKLDD 322 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE--------------------------- 477 ID+L NRR+RSVGE+ + Q RV L R+++ + Sbjct: 323 IDNLENRRVRSVGELLQLQVRVALGRIKKKINTDEKLTAEMFRIKKNKKRAGMKNSTPKK 382 Query: 478 ----------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 R +TLMP +++N+K +++ ++EFFG S LSQ+ D+ N L+++THK Sbjct: 383 NKSTKKNQLGRKKKPQKETLMPNELLNSKVLTSVIREFFGLSPLSQYFDEVNALAQLTHK 442 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RRIS+LGPGGL E F RD+HPT YGR+CPIETPEG GLI SL+ +A+ N YGF+ Sbjct: 443 RRISSLGPGGLNSEHVSFAARDIHPTQYGRLCPIETPEGQKAGLIASLATHARINNYGFI 502 Query: 588 ETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 TP+ +V G V E+ YL+A +E Y +A + L + F +V RS E Sbjct: 503 TTPFFRVYKGKVLYELGPVYLTAEQEATYNVASGDVLLTRDNFFRTKIVPVRSFNEFITV 562 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 V+++ VS Q+++VGASLIPFLEHDDANRALMG+NMQRQAVP L KP++GTG+E Sbjct: 563 DAINVNFLAVSPIQILAVGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIE 622 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 +A DS V + G++ V + RI I N+ +Y L KY RSNQ T I Sbjct: 623 HQIAADSQVVLINLLDGIIDSVCSDRITIIDNKY-----LGSSKMYFLDKYRRSNQETII 677 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 NQ P + GE VE G ++ADGP T+ GELALGQN+ VA+MPW+GYNFED+ILVS+R+VQ+ Sbjct: 678 NQKPLIWNGEIVEPGQIIADGPGTEGGELALGQNLTVAYMPWDGYNFEDAILVSDRLVQD 737 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 D FT+IHI++ D EEIT IPN+ E + LD +GI+ G V GGDILVG Sbjct: 738 DLFTSIHIEKYELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDILVG 797 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKR 944 K+TP E PE KLLRAIF ++ + +DSSLRVPNGVSG VI++Q +R+ G Sbjct: 798 KITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASREKGDNLGSG 857 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 E + + Q KK ++I + +++ + + + LP +++ L Sbjct: 858 IYEWVCISIAQIKK-----IRIGDKLSGRHGNKGVISKIIPTDDMPFLPDGTIVDVILNP 912 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 +++ Q E F +R K+ D++ + + A+K+ + D Sbjct: 913 LGVPSRMN--VGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKETD 970 Query: 1065 KM 1066 K Sbjct: 971 KC 972 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 176/483 (36%), Positives = 256/483 (53%), Gaps = 61/483 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +++ G V G I+ G T GE L + L A + +D+ L VS + Sbjct: 682 LIWNGEIVEPGQIIADGPGTEGGELAL--GQNLTVAYMPWDGYNFEDAIL-----VSDRL 734 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ----------ILEAGLFSRIRAV 978 + +FT +EK + L E +++ + + I++ G F + Sbjct: 735 VQDDLFTSIHIEKYELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDI 794 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + D+LP + L E + + L E + ++ + Sbjct: 795 LVGKITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASR----EK 850 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L G+ + V + +A ++I+ GDK++GRHGNKGVISKI P +DMP+ +GT VD++L Sbjct: 851 GDNLGSGIYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPFLPDGTIVDVIL 910 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN+GQI E LG A + + + D K Sbjct: 911 NPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPF--------------------DEMYK 950 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + S + ++ A AKE + L + G++ L DGRTG Sbjct: 951 PNASRILINKALKKA----------------AKETDKCWLFNKF---SPGKVLLTDGRTG 991 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + F+ V VG Y+LKL HLVD KMHARSTGSYSLVTQQPLGGK++ GGQRFGEMEVWAL Sbjct: 992 DVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWAL 1051 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EA+G AYTLQE+LT+KSDD+NGR +++ I+ G++ EPG+PESFNVLL+E+ +LG+++ Sbjct: 1052 EAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGHNIPEPGIPESFNVLLRELNALGLDMT 1111 Query: 1339 LED 1341 + Sbjct: 1112 THE 1114 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 81/424 (19%), Positives = 156/424 (36%), Gaps = 62/424 (14%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YR 74 K+ + +P L +Q SF F+ + GL + I + + EL Y+ Sbjct: 9 KQKSPIILPDLSEVQRISFCWFLTE------GLPEELTNCPSILNQNSGIELIIYGQEYK 62 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTVKDIKEQEVYMGEIPLMTD 132 + P F + + Y+ + V + L E ++ +++ V+ GEIPL+T+ Sbjct: 63 IYYPGFALLNALTKKGNYNLRIYVLMSLKKNEIIKKGIVQPEDFSRKERVFFGEIPLLTE 122 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 GTF+ NG ERVI+SQ+ RSPGV++ + K+ Y II GSWL FE + Sbjct: 123 KGTFIFNGCERVIISQIIRSPGVYYK----QIIKEKKIFYEGTIISKYGSWLTFEL-EYN 177 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDL-----------------FFEKVIFEIRDN 235 ++V+ D++ K+P L L+ ++ F+K+ + N Sbjct: 178 LIWVKFDKQYKIPINWFLVGLSLEESEVYQTVQNFNFLIKSLSAIRLAIFDKMTSKSEKN 237 Query: 236 KLQMELVPERLRG------------------ETASFDIEANGKVYVEKGRRITARHIRQL 277 K+ + E + +D+ G++ + K I R+ Sbjct: 238 KVVDKENHEAYNRNILLTVFRVQELINQRLLDKGVYDLGEVGRIKLNKKLDIGLPLSRRT 297 Query: 278 EK--DDVKLIEVPVEYIAGKVVAKDYIDESTGEL-----ICAANMELSLDLLAKLSQSGH 330 D +K+I+ + D + + + + ++L + K + Sbjct: 298 LTSLDILKVIDKLIHISFHNEKLDDIDNLENRRVRSVGELLQLQVRVALGRIKKKINTDE 357 Query: 331 KRIETLF-TNDLDHGPYISETLRVDPTNDRLSALVEIYRM----MRPGEPPTREAAESLF 385 K +F + + + + + L + + P E + S+ Sbjct: 358 KLTAEMFRIKKNKKRAGMKNSTPKKNKSTKKNQLGRKKKPQKETLMPNELLNSKVLTSVI 417 Query: 386 ENLF 389 F Sbjct: 418 REFF 421 >UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Stigeoclonium helveticum RepID=RPOB1_STIHE Length = 696 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 227/734 (30%), Positives = 372/734 (50%), Gaps = 61/734 (8%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + +P + +Q SFQ+F+E GL PI + + E+ Y+L Sbjct: 4 EKYFIPDFVELQRRSFQRFLE------TGLIEELNKRNPITNSQKDLEILLYPEYYKLAP 57 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P ++ + + TYS L V +L + K I + V +G+IPLM+ G FV Sbjct: 58 PRWNSLDAILLSKTYSCRLYVPAQLTNRK-------TKQIMFKWVQLGDIPLMSKRGHFV 110 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL---YNARIIPYRGSWLDFEFDPKDNL 194 +NG RVI++Q+ R PG++F + SS K L Y A I RG+WL D + + Sbjct: 111 VNGAARVIINQIVRGPGLYFSEIQYNVDSSKKTLVRRYAAEFISMRGTWLRLSIDKEKMI 170 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + + K+P L + T + + + K + + L+ + + D Sbjct: 171 WAELKKTPKIPLVWFLLGMGLTEKILFQS--------LTQPKRLLYNYLDYLKIDNLAID 222 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID-------ESTG 307 +++ + ++ +L ++K ++ ++ +V Y + E+ Sbjct: 223 VKSQNDAFAKRALLRELLLKSKLNSSNIKTLKNSKDFKPLLLVNDIYSEMHSYKEKENRR 282 Query: 308 ELICAANMELS--LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 + + N +L+ + + + S K +E +++ I+ T ++ N + A Sbjct: 283 YPLNSQNGDLADEKEKIPYYANSSLKALELIYSK-------ITNTKKITNLNKKFFAK-- 333 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + F + YDL GR+ N+ L L+ D+ Sbjct: 334 --------------QGQKWIFKKFMNPRTYDLGLHGRLSLNKKLSLSLPLSQRTLTMYDV 379 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 + + L+ + G DDID+L NRR+R+ ++ + Q +GL+R+E+ ++ + + Sbjct: 380 LVATEHLLRVEQGLLGTDDIDNLKNRRVRTSSDLIQMQIGIGLLRLEKNIRSKFTTIKG- 438 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + KP++ A+KEFFG++ LSQFMD NPL+E+THKRR++ LGPGG++R+ A Sbjct: 439 VPKINYFFSTKPLNGALKEFFGTNPLSQFMDMINPLAEMTHKRRLTTLGPGGVSRDTATM 498 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--I 603 ++R +HPTHYGR+CP+ETPEG N GL+N+L+ +A+ N G +ETP+ KV G V + Sbjct: 499 DIRGIHPTHYGRICPVETPEGKNAGLVNALTTFARVNPEGLIETPFYKVYKGQVQKKAGF 558 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 YLSA +E +IA + NL + G + L+ R E + R+ VD+M VS Q++SV Sbjct: 559 FYLSAEKEEKAIIAAGDLNLSKTGFLPKGLIPVRKFDEFTKVLRNYVDFMSVSPLQMISV 618 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 SL+PFLEHDDANRALMGANMQRQAVP +R+++ +VGTG+E +A DSG AK GG+ Sbjct: 619 ATSLVPFLEHDDANRALMGANMQRQAVPLVRSEQAIVGTGIETRIASDSGHVIRAKAGGL 678 Query: 724 VQYVDASRIVIKVN 737 V YV +I I Sbjct: 679 VGYVSGQKIRIYTF 692 >UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-terminal section n=3 Tax=Eukaryota RepID=RPOB1_CHLRE Length = 822 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 231/758 (30%), Positives = 371/758 (48%), Gaps = 102/758 (13%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + + IQ +SF +E+ G+ F PI + E+ + Y+L Sbjct: 120 NKYLISDFVEIQRNSFFTLLEK------GIIEEFSKRNPITNSKKTMEIFFYPDYYQLTP 173 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P + + I+ +Y++ L + ++L + IK + VY+G+IPLMT G F+ Sbjct: 174 PEYSPSQAIIKSKSYTSKLYIPVQLTDKSKNI-------IKLKWVYIGDIPLMTKRGHFI 226 Query: 138 INGTERVIVSQLHRSPGVF--------FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 +NG RVIV+Q+ RSPG++ F + + + Y A +I RG+WL E D Sbjct: 227 LNGCARVIVNQMVRSPGIYYQKKIYENFSNKWSEKPENTFTRYFADLICNRGTWLRIEMD 286 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG- 248 + ++ ++ R K+P L A+ T + +L + I ++ + + L Sbjct: 287 KYNKIWAQMKRVPKIPIMWFLIAVGLTDKIVLKTVMDSKILLYNLDEDPLNPRKKPLPYV 346 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 +T A + K + + + L Sbjct: 347 KTPPAAWSAIYNIVFAKKIKAQEKAKKML------------------------------- 375 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND--RLSALVEI 366 EL+ + SQ+ +K + + L+ ++ T P + LS L+++ Sbjct: 376 -------ELTEGNPSSKSQTKNKTSASKKSKTLN----VANTKGKTPAENIKTLSELIDL 424 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 + + E N F + YDL VGR+ FNR L + L+ D++ Sbjct: 425 EKAL----FLKSEQGRKWIFNKFMNPRTYDLGKVGRVNFNRKLKLSISQDITTLTPQDLL 480 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG---- 482 LI + G E+DDIDHL NRR+R+ GE+ + Q VGLVR+E+ ++E+++ Sbjct: 481 AATNNLILVSKGLRELDDIDHLKNRRVRTSGELIQIQIGVGLVRLEKTIREKMTYASGLS 540 Query: 483 ------------------------DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + L ++IN KP + A++EFFG+S LSQFMDQ Sbjct: 541 SLPSQKFAFRSSKQRNQSPVGDAENATQLTIGNLINTKPFNGALREFFGTSPLSQFMDQI 600 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+E+THKRR+S++GPGG+TR+ A +R +HP+HYGR+CP+ETPEG N GL+NSL+ Y Sbjct: 601 NPLAELTHKRRLSSMGPGGVTRDSATLAIRGIHPSHYGRICPVETPEGKNTGLVNSLTAY 660 Query: 579 AQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 A+ N G++ETP+ +V G V + +++ SA +E + + E G + + Sbjct: 661 ARVNAAGYIETPFYRVYKGQVQKKTGLYFFSAKQEEKIKLGAPDLYTSEIGFLPKASIPV 720 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + + SR+++ Y+ V+ Q++S+ SLIPF EHDDANRALMG+NMQRQAVP L+ Sbjct: 721 RIVEDFTKISRNEIQYVGVAPIQMISIATSLIPFFEHDDANRALMGSNMQRQAVPILKPQ 780 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 +P+VGTG+E DSG AK G+V Y + I+I Sbjct: 781 RPIVGTGLEARAVSDSGHVITAKSSGIVMYTSSKEIII 818 >UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y994_COPPD Length = 1293 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 273/743 (36%), Positives = 391/743 (52%), Gaps = 32/743 (4%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD-VKL 284 + I + + ++V E ++ +G V V ++ R + K + + Sbjct: 328 DTSINIFTVSTVWDQIVAALRETELLEDVLDKDGSVVVRANSPMSTRDVETFFKSHVIPM 387 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAA----NMELSLDLLAKLSQSGHKRIETLFTND 340 + I KV + + G +I + L +++ T Sbjct: 388 VRSGKYDIKVKVPVRGQMKAYEGWVIADDVEVDGESVEGRALDPELAKSLRKVSDFVTLQ 447 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 + + + SA VE+ + R GE + AE F L F R + V Sbjct: 448 VPIKRFF-----------QGSAFVELEKR-RTGETLSEREAERRFRQLLFDPKRNQIGRV 495 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 G + + L+ + + ++ L+ G DDIDHL NRR+R++GE+ Sbjct: 496 GAYHIEHRYGIKVEDS---LTDEMLAELGGILLAYCIGSTMPDDIDHLSNRRVRAIGELY 552 Query: 461 ENQFRVGLVRVERAVK-ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 F R+ + + E ++ L ++ ++ V F S++ Q ++ N Sbjct: 553 YEVFANAFERLVKTARDEMINQQKEPELKLHRVLAQNILTQYVWRFVNPSEVHQLLEYTN 612 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 PL+EITHKRR++A+G GGL+RE A EVRDVH THYGR+CPIETPEG NIGLI SL+ YA Sbjct: 613 PLTEITHKRRVTAMGRGGLSREHASIEVRDVHHTHYGRLCPIETPEGQNIGLILSLATYA 672 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 + NE+GFL TPYR+V +G VTDEI ++ A+EE I A++ L+ V D V R + Sbjct: 673 KLNEHGFLITPYRRVVNGEVTDEIVWMDALEEEKEYIVPADTPLNGRKINV-DRVLARHR 731 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 + +DQ+ MDVS Q S+ ASL+PFLE DDA RALMG+NMQRQAVP + A+ P+ Sbjct: 732 SQWVAVDKDQITLMDVSVTQPFSISASLVPFLESDDAIRALMGSNMQRQAVPLINAESPI 791 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 V TGME+ V A + G V YVD ++ IK + Y L + R+ Sbjct: 792 VATGMEKHVVESLDYVIKANQDGTVSYVDGKQVKIKAEDGYE-------KTYQLKVFDRT 844 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 NQ+T ++ P V G+ V++GDVLA+ ++D GELALG+N+ VAFMPW GYN+ED+IL+S Sbjct: 845 NQDTVVHFRPKVKQGQKVKKGDVLAEAITSDNGELALGRNVLVAFMPWEGYNYEDAILIS 904 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLG-PEEITADIPN-VGEAALSKLD-ESGIVYIGAE 876 +R+V++D FT++HI+E + G EEIT D+P+ V E LD E+GIV +G E Sbjct: 905 KRLVKDDVFTSVHIREYMVEVAELSRGRSEEITYDLPDSVSEQEKRYLDPETGIVMVGTE 964 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPK E + E KLL AIFGEK VKD+SLRVP G V+D Q+ Sbjct: 965 VKPGDILVGKVTPKEEEDKSIETKLLSAIFGEKLDKVKDTSLRVPPAEGGIVVDTQILRN 1024 Query: 937 DGVEKDKRALEIEEMQLKQAKKD 959 K K + K D Sbjct: 1025 SETGKIKAVKVFVAQKRKIQPGD 1047 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 160/410 (39%), Positives = 215/410 (52%), Gaps = 65/410 (15%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 +++V +R E + ++ + +Q K+ L E I+ G + +LV E Sbjct: 922 MVEVAELSRGRSE--EITYDLPDSVSEQEKRYLDPETGIVMVGTEVKPGDILVGKVTPKE 979 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 + DK + L ++ + + L E + ++ G + Sbjct: 980 EEDKSIETKLLSAIFGEKLDKVKDTSLRVPPAEGGIVVDTQILRNSET---------GKI 1030 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K VKV++A KR+IQPGDKM+GRHGNKGV+S++ P EDMP+ +G PVDIVLNPLGVPSRM Sbjct: 1031 KAVKVFVAQKRKIQPGDKMSGRHGNKGVVSRVLPEEDMPFLPDGRPVDIVLNPLGVPSRM 1090 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 N IG + L +V Sbjct: 1091 N---------------IGQLLELHLGLAAKVL---------------------------- 1107 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 G + P+F +KELL+ LP +G++ L DGRTGE+F +TV Sbjct: 1108 -----------GFKVEVPIFSNFGVEGVKELLREAGLPENGKVVLRDGRTGEEFLSDITV 1156 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 GYMYM+KL H+V+DK HARSTG Y+LVTQQPLGG+A FGGQR GEMEVWALEAYGA+Y L Sbjct: 1157 GYMYMMKLIHMVEDKWHARSTGDYALVTQQPLGGRAHFGGQRLGEMEVWALEAYGASYVL 1216 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 QEMLTVKSDDV GR K Y + P +PESF VL E+++LG + Sbjct: 1217 QEMLTVKSDDVEGRKKAYIALTRNQPLEPPQLPESFKVLELELKALGFMV 1266 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 100/435 (22%), Positives = 183/435 (42%), Gaps = 70/435 (16%) Query: 6 TEKKRIRKDFGKRPQV----LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 T +K+I + GK + + P L + +S+ F+ + GL F + FPI+ Sbjct: 2 TARKKIWEVSGKVSKPTLSEVPYPDFLEAKKNSWNWFVTE------GLRELFNTYFPIED 55 Query: 62 YSGNSELQYVSYRL--------GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 G + + Y G P+ ++ TY+ L VK+R+ E Sbjct: 56 AKGRWRIDILDYYFENDVADETGNPINTPEDAIREHATYAKRLIVKVRVHNSE------- 108 Query: 114 VKDIKEQEVYMGE-IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 +I E+E +G+ IP MTD+G F++NG+ RV ++QL RSPG++ ++D L Sbjct: 109 TGEIVEKEHVLGKRIPWMTDSGDFIVNGSRRVTLNQLVRSPGIYLEADGS--------LR 160 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNY-TTEQI---------- 220 +IP RG+W+D E+D K+ L + +DRR +KL LRAL Y + ++I Sbjct: 161 RISLIPQRGTWIDIEYDGKNPLSIVLDRRSKKLNLATYLRALGYMSDDEIRTRLKDSALK 220 Query: 221 -LDLFFEKVIFEIRDNKLQMELVP--ERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 ++ F F+ + + LV LR +S + V + + + + +L Sbjct: 221 WIEFFLNDAGFDNKKLFVSQNLVSYFNYLRSYYSSTAQTVSEFRNVLENLDVDDQLLERL 280 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK-----R 332 E+ +V+ + +A+ Y + +G I + + L L Sbjct: 281 EEYNVESVLDE--------IAESYASQYSGLEILNIFKTIVDENLKLLIDKTIDGDTSIN 332 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFS- 391 I T+ T + ET ++ D+ ++V +R P + E+ F++ Sbjct: 333 IFTVSTVWDQIVAALRETELLEDVLDKDGSVV-----VRANSPMSTRDVETFFKSHVIPM 387 Query: 392 --EDRYDLSAVGRMK 404 +YD+ ++ Sbjct: 388 VRSGKYDIKVKVPVR 402 >UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOB_HELSJ Length = 1247 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 313/1366 (22%), Positives = 558/1366 (40%), Gaps = 219/1366 (16%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV--FPIQSYSGNSELQYVSYRLGEPVFDVQ 83 LL Q ++++ F+ GL+ AF+ F I++ + ++ + L ++ Sbjct: 30 NLLINQRENWRFFL------INGLKLAFKEFEHFKIKNNNFIIDIVFQEKFLF--FKQIR 81 Query: 84 ECQIRGV-TYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 + ++ V T+ + + + ++ + + + + + +G +P ++ +F I+G Sbjct: 82 QAYLKKVETFGYNIFIPI-IITQKILNKKNNLNLTFFKWLDLGILPSLSPKTSFYIDGIS 140 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA--RIIPYRGSWLDFEFDPKDNLFVRI-D 199 R + +Q +SPG+ FD D K S K A +II RGSW + +F+ I + Sbjct: 141 RAVSTQKKKSPGLMFDFDLTKKSSLEKREGEAFLKIIAPRGSWFKISYSEDHIIFIEIRN 200 Query: 200 RRRKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 K+P L AL ++ E I F + F++ NK N Sbjct: 201 IAYKIPIFTFLCALGFSLESIFQFFNYNINNFKLIPNKY-------------------DN 241 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 ++ I + L + ++YI + +T A + L Sbjct: 242 TNALIKARNDIFILYSDLLPLLNKTKKNFEIKYIINHYFFSYIWNSNTRYCGEATRLHLY 301 Query: 319 LDLLAKLSQSG--HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 + + LS + + I+ ++ + I+ + + ++ ++ R G+ Sbjct: 302 NKVGSPLSLNSLFLEEIDFIYITKIFIYRLINNNFKDENNDN-----LKNMRFRNGGDYI 356 Query: 377 TREAAESLFE-NLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 + + LF+ F + + +++ N S K+DI + KK Sbjct: 357 YLQTRQGLFDFESFLNINLHNIE-------NNSFFCNITTNK---KKEDIYSIKKKKNIK 406 Query: 436 RNGKGEVDDIDHL---GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM 492 ++ + H+ + G + +QF L Sbjct: 407 NFNLSKISFLKHILLKSWKSFFLSGTL--SQFAENL------------------------ 440 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 + LS ITH RR ++LGPG L + A EVR ++P Sbjct: 441 ----------------NPLS----------YITHARRFTSLGPGSLKKAEASIEVRSINP 474 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI---HYLSAI 609 ++ GRVCPIETPEG N GL++S S+Y+ G L P+ + + + + Sbjct: 475 SYNGRVCPIETPEGFNAGLVHSFSLYSFKGVNGELLLPFYFIYKNIKQSYYLPPIFFNIE 534 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 EE N I + ++ F+ ++ R+ ++ + +S ++S+ SLIP Sbjct: 535 EESNQSIITGDLIHEKWNDFLNKKLSLRNNFHLDKNDISKISFQSLSPYHMISLATSLIP 594 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 FLEH+DANRALMG+NMQRQ VP L A +V TG++ D +++ G Sbjct: 595 FLEHNDANRALMGSNMQRQTVPVLGAHNFIVRTGLDTKFFSDISSIPISQINGF------ 648 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKY--TRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 N Y + I + N++ ++N N+ ++GD L + Sbjct: 649 -NFESNNNYCYFYKIDNLITLNNISYNYIKKTNHNSLYINESIKKKNPWHQQGDFLINNS 707 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL---------AC 838 + G+LALG N+ +A++PW+GYN+ED+++++ER V + T++HI L Sbjct: 708 VIENGKLALGPNLLLAYLPWHGYNYEDAVIINERCVSQKILTSLHIITLTNSLELAYREI 767 Query: 839 VSRDTKLGPEEITADI---------------PNVGEAALSKLDES---GIVYIGAEVTGG 880 + + +I N + K + S + IG + G Sbjct: 768 NKKKEFFYEVPVKLEILFSFFAPFYYNLKYYKNQEFSQFEKKNPSYYTNNINIGTFLKKG 827 Query: 881 DILVGK------VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 D + K + + Q LLR F D K+ Sbjct: 828 DCIFSKCRIRFSFSRELRLQYKELFILLREAFPT-FEDFKN------------------- 867 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 + DK +++ + K+ + ++ + + + + Sbjct: 868 FANIFAYDKYKQKLDRKKQKKNTRLKTDNFIFNKNSTLFKKHKL----KALINYYNIEDS 923 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + + L+++ Y + F+ + ++ + + K + + + Sbjct: 924 TIYAQKNQEGLIISKHLKKVPMTYTSIT-PFDLEEFLSTKESKKKEYYNLFFTKSINIEI 982 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 R IQ GDK AGRHGNKG+ISKI PI +MP +GTP+DI+LNPLG+PSRMN+GQI E Sbjct: 983 LQLRDIQLGDKCAGRHGNKGIISKICPINEMPLLPDGTPIDIILNPLGIPSRMNVGQIFE 1042 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 + LG+A + + + +Q G + + LS ++ Sbjct: 1043 SLLGLAGFYLNETYTINIFDEQ--------------FGLEASRSFVLSKLYKASILSNKP 1088 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 L +G+ + DG TG+ F++P+T+GY +LK Sbjct: 1089 -------------------------WLFLKKNAGKTNIIDGLTGKYFQQPITIGYSSILK 1123 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+V DK+H RS G YS +T QP GK+ GGQR GEME+WAL+ YGA++ LQE+ T+K Sbjct: 1124 LIHMVTDKLHGRSIGGYSTLTLQPTKGKSLLGGQRVGEMELWALQGYGASWALQELYTLK 1183 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SD V R + ++N ++ + E + + ++ L E+ SL I+ + Sbjct: 1184 SDLVEAR-QHFQNYINSFNI-ESNIYDRNDISLTELESLIISDTFK 1227 >UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carteri RepID=B8R1A0_VOLCA Length = 652 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 247/606 (40%), Positives = 338/606 (55%), Gaps = 94/606 (15%) Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 + ++ P YNL Y RSNQ+TC+ Q P V G+ +E GD+LAD S+ GE Sbjct: 101 LSYPKNYSTPSRKLFLKYNLETYRRSNQDTCLIQKPAVKEGDWIETGDLLADSASSVGGE 160 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD 853 LA+G N+ VA+MPW GYN+ED+IL++ER+V ED +T++HI+ ++ DTKLG E+IT + Sbjct: 161 LAIGHNIIVAYMPWEGYNYEDAILINERLVYEDLYTSVHIERYEVLTTDTKLGSEQITRE 220 Query: 854 IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 IP+ E +S LD++GI IG+ V GDILVGKVTP LTP++KLL IF ++ S Sbjct: 221 IPDTNENEISHLDKNGIAKIGSWVEEGDILVGKVTPFNIKTLTPQQKLLYKIFNKQLSAT 280 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 KDSSLR P G+ VI+V + + +E + + Sbjct: 281 KDSSLRAPKGIKANVINVNILKKQKIELNNKDK--------------------------- 313 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 + +++ K N L Q +++ +R Sbjct: 314 --KKIVITKK----------------------AKINLLTQQTISVQNNQNQNTNNTNGRR 349 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 RK + AP V +YLA KR+IQ GDKMAGRHGNKG+IS+I P +DMP+ +GT Sbjct: 350 RKREISNTYAPS---YVHIYLAEKRKIQVGDKMAGRHGNKGIISRILPRQDMPFLPDGTS 406 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VDIVLNPLGVPSRMN+GQI E LG+A + +G+ + GA Sbjct: 407 VDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEM--------------YGA 452 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 D + LS D L L D G+IRL+ Sbjct: 453 DASRSFVLSKLYDARKKTG-------------------------LNWLFDPNHPGKIRLF 487 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGR E F++ VTVG Y+LKL H+VDDK+HARSTG YSLVTQQPL G+++ GGQR GEM Sbjct: 488 DGRNSECFDQTVTVGIAYVLKLVHMVDDKLHARSTGPYSLVTQQPLRGRSKQGGQRLGEM 547 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWA+E YGAA+ L EMLT+KSDD+ GR ++KN+++ N+ + G PESF VL+ E+++L Sbjct: 548 EVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLWKNLIE-NNDISLGSPESFKVLVCELQAL 606 Query: 1334 GINIEL 1339 ++I L Sbjct: 607 CLDIGL 612 >UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Tax=cellular organisms RepID=RPOB_PSEAK Length = 2178 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 225/719 (31%), Positives = 357/719 (49%), Gaps = 77/719 (10%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPV 79 +P L+IQ SF++F++ GL F++ I + + E+ + Y+L P Sbjct: 63 FKIPDFLNIQRSSFRQFLKS------GLITEFKNCKSITNSNQTFEVFFYAEHYKLNRPK 116 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 + ++ ++ +YS+ L + ++L Y+ E ++ Q V + +PLMT NG F++N Sbjct: 117 WTPKQAILKKKSYSSQLYLPIQLSNYQTE-------EVHLQWVLLANLPLMTKNGHFILN 169 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD-PKDNLFVRI 198 G RV+++Q+ RSPGV+F K + K +Y+A I RGSWL E D K +++ ++ Sbjct: 170 GCPRVLMNQIVRSPGVYFR----KVVKNQKTVYSADFIAQRGSWLRLEVDTKKGDIWAKL 225 Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 + K+P LRAL T + N Sbjct: 226 KKTPKIPIFTFLRALGLTLPIL-------------------------------------N 248 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + K R + +K P + +V + Sbjct: 249 NSIDFAKLRYLLQFKEESKRSKKIKDFLGPGINNSLDIVEFRSL---------------- 292 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 L L K + + + +++ + L ++Y + E + Sbjct: 293 LKSLKKYMKPKPAKKSSKKQKTKKIKKWLTPFVCTTYFQSLLELCQKLYPQKKFLELDPK 352 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 A + LF F + YDLS +GR K N+ L IL+ D++ L+D+ G Sbjct: 353 LAQKFLF-RKFQNPRTYDLSILGREKINKKLGISIPLEKTILTSQDVLFACLFLMDLLQG 411 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPI 498 DDID L NR+I+ GE+ + Q GL+R+E+ ++E+L D+ ++ + KP+ Sbjct: 412 LVISDDIDDLKNRKIKPSGELIQTQLSTGLIRLEKIIREKLKQPKQDSDSFSNLFSVKPL 471 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + A ++FFG++ LSQ MDQ N LSEITHKRR+S+LGPGG+ RE AG +R +HPTHYGR+ Sbjct: 472 NQAFRDFFGTNPLSQLMDQTNALSEITHKRRLSSLGPGGINRETAGMAIRGIHPTHYGRI 531 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGNYVI 616 CPIETPEG N GL+NS ++++ N F+ETP+ K+ G + S+ +E N V+ Sbjct: 532 CPIETPEGQNAGLVNSFTIFSHLNTKSFIETPFYKMYKGFILKNKNPFLFSSDQERNLVL 591 Query: 617 AQANSNLDEEGHFVEDL-VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 A + + + R E SR++++++ VS Q++S+ SLIPFLEH+D Sbjct: 592 APGDIQTSLFHFLPPGVPIPSRQFKEFKRVSRNEINFIAVSPIQMISIATSLIPFLEHND 651 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 NRALMG+NMQRQAVPT+R KP+VGTG+E V D G ++ G V YVD ++I+I Sbjct: 652 GNRALMGSNMQRQAVPTVRPSKPIVGTGLESRVISDVGHGLQVQKSGFVSYVDGNKIII 710 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 151/414 (36%), Positives = 222/414 (53%), Gaps = 47/414 (11%) Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 + F + L+I+ L++ + + L+ +R + A Sbjct: 1795 RIAKEMYFFNKNEKIKLSTLQIKIKGLEKKEFSFPKILK-------ARFSLLQKAQTANL 1847 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + L W + +++ Q + + + K + + + + Sbjct: 1848 KIEKFLDDKFWNNVNYSNKNFSRNGSQKENSNADGLQFYNPLKKTKTKVLQPMEKTSFSG 1907 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + V +YLA KR++Q GDK+AGRHGNKG+IS I P +DMPY +GTP+DIVLNPLGVPSR Sbjct: 1908 PQKVHIYLAEKRKLQIGDKIAGRHGNKGIISNILPRQDMPYLSDGTPLDIVLNPLGVPSR 1967 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQILE LGMA + KQ ++ E G + + + S + Sbjct: 1968 MNVGQILECLLGMAGYYL--------KQNFKIQPFDEI------YGCEASRSLVYSKLYE 2013 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 A+ ++ L G+ RL+DGRTG+ F++PVT Sbjct: 2014 -----------------------ARIKTGQDWLFNA--NHPGKTRLFDGRTGDCFKQPVT 2048 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE +GAAY Sbjct: 2049 VGVAYILKLIHLVDDKIHARSTGPYSLVTQQPLRGRSKQGGQRVGEMEVWALEGFGAAYI 2108 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LQE+LT+KSDD+ GR ++ +I++ N + G+PESF VL++E++SL ++I + Sbjct: 2109 LQEILTIKSDDLKGRNQVMNSILN-NKPVNFGLPESFKVLVRELQSLCLDIAIY 2161 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 97/326 (29%), Positives = 165/326 (50%), Gaps = 5/326 (1%) Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 D R V +N ++ Y L Y RSNQ+T + P V G+ VE+GD+LAD Sbjct: 1492 DKKRRVEIINSSSLFYNNLIPQNYILNNYHRSNQDTYMIHRPLVQEGQWVEKGDILADSS 1551 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + GEL++GQN+ V ++PW GYNFED++L+SER++ +D +T++HI+ RDT+ G Sbjct: 1552 VSVQGELSIGQNILVGYIPWEGYNFEDAVLISERLIFDDLYTSLHIERYEVEIRDTQFGL 1611 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 E+IT IPN + +D +GI IG V GDILVGK+ P G+ +LT E LL I Sbjct: 1612 EQITNQIPN-EKGEYDYIDSNGIAKIGTWVKEGDILVGKIAPIGQKKLTAYENLLYDILN 1670 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL----SEE 963 ++ +D+SLRVP GV+G VI V++ + + ++ + ++ + +K E Sbjct: 1671 KEIPKTRDTSLRVPRGVTGRVIHVEIVETTKKKGNDSSIFAKSLKFPKKQKLKRVTSPEY 1730 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 + ++++ E L + E + + + L ++ + Sbjct: 1731 WYPVNTKKDQKVQSFSFKNKSEKLFLTPVQSYFNKEAKTKNPKLNSPFFYLNKRNPDFNL 1790 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKI 1049 + K++ + + + + L+I Sbjct: 1791 KRNKRIAKEMYFFNKNEKIKLSTLQI 1816 >UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas americana RepID=O21237_RECAM Length = 1478 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 275/986 (27%), Positives = 458/986 (46%), Gaps = 86/986 (8%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 +R F +++ +P LL I S+ F+++ L+ +S+ ++ Y GNS + Sbjct: 15 LRLGFSSINEIVPIPNLLKISKSSYNNFLQRFVPYSKRLDVGIQSL--LKKYFGNS---F 69 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 + Y G + EC G+TYS PL V L++ + + ++ Y+GEIPL+ Sbjct: 70 ICYSFGVSEKNPDECLENGLTYSIPLYVFLKVNMKDNVKDTI-------KKYYIGEIPLL 122 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 TD+G+F+ING E +++QL R GV+ + K K R + R LD+ +D Sbjct: 123 TDSGSFIINGVENTVINQLVRDSGVYINKSKSPFI---KTSLKIRGLKGRSIQLDYFYD- 178 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPERL--R 247 + + +ID + + + + + + +++LD F K+ F+ + + Sbjct: 179 -NFIGQKIDTKTLISGKNLNQNITHQEIDKLLDSF--KISFKEIGETFTYSITEYKYCNM 235 Query: 248 GETASFDIEANGKVYVEKGRR---ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD---- 300 G F+ + K K + T+ + I + + K ++ D Sbjct: 236 GWFIDFNWKEISKYRFIKKNKNIISTSLSFDNNLLANNDYISILNTVVNNKFISNDKFLN 295 Query: 301 --------YIDESTGELICAANMELSLDLL------AKLSQSGHKRIETLFTNDLDHGPY 346 Y D + +I N + S L + LS + L N + Y Sbjct: 296 HDLFLLDIYKDNKSIFIIENTNDDFSYPLELLNKVGSHLSSFKNSDFLFLIENKNINYQY 355 Query: 347 ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED-----RYDLSAVG 401 I L+ P + R S V I + + ++ + +N FF E + L +G Sbjct: 356 IFINLKEQPDSIRNSLQVVIESKKK--KLLMFFNSKHVLKNDFFLEKDVLFHNFKLGPIG 413 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID--HLGNRRIRSVGEM 459 R+K N E + L+ D +++ LI I G E D + L NRR ++GE Sbjct: 414 RLKINLKFGLNEKKEE--LTSIDFTRILRYLIQIDKGFIENDIYEEQSLLNRRFNNIGEH 471 Query: 460 AENQFRVGLVRVERAVKERLSLGD--LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 + L+ E + K +S D + ++ + + N + + + S L Q+ +Q Sbjct: 472 LYSCLSDYLISKEDS-KYSVSKEDYIKNQMLFKKINNCRNAFYFLIRYLNKSSLCQYTEQ 530 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N LS + H R++S +GPGGL + E+RDVH + YG++CPIETPEG ++G++N+LS+ Sbjct: 531 ANALSYLGHTRKVSIMGPGGLKNDNISLEMRDVHISTYGKICPIETPEGKSVGVVNNLSL 590 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE-DLVTC 636 Y +TN LETPY V + VT+ IHYL+ EE Y IA A L ++G F+ + C Sbjct: 591 YTRTNTLFQLETPYIFVKENFVTNIIHYLTPQEEKYYKIAHATEVLKKDGSFLNTKEIYC 650 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R VDY+++S+ Q+ S+ AS+IPFLEH+D NRALMG+NMQ+QAVP L + Sbjct: 651 RYLHSLITVDSKNVDYIEMSSGQITSLSASMIPFLEHNDGNRALMGSNMQKQAVPLLNLE 710 Query: 697 KPLVGTGMERAVAVD-----SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI- 750 K L+GTG+E + D + V + +I+ K N++ ++ + I Sbjct: 711 KSLIGTGIEGIIGRDFFNISKNLLLEKMTNENVFGISILKILKKENKNIIFSQFVDLFIK 770 Query: 751 ----YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 Y+ K+ SNQ T I+ + ++ G S EL+LG N+ V F Sbjct: 771 NHFLYSTIKHKNSNQKTDIDFKYVNKKNINIFENNIDNIGYSIKNNELSLGNNVLVGFTS 830 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 NG+ FEDSI++SER+V+++ F +IH++ + K E I + + LD Sbjct: 831 MNGHTFEDSIVISERIVRDNYFQSIHLEVYKTMEMYEKDSQEIIRNFL------STDFLD 884 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 G++++G V DIL+GK K + L+ + KL+ V D S+R N G Sbjct: 885 VDGVIHLGTNVCTNDILIGK--EKRQLLLSEKNKLI----------VYDKSIRYKNKKKG 932 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQ 952 VI + F V+ +K + +Q Sbjct: 933 VVIQIAKFFDSLVDLNKHYITTSNLQ 958 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 138/293 (47%), Positives = 199/293 (67%), Gaps = 4/293 (1%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L++VKV +A K IQ GDK+ GR+GNKGVIS+I +EDMPY +GTP+DIVL+PLGV SR Sbjct: 1183 LRMVKVVVACKHNIQVGDKLTGRYGNKGVISRILSLEDMPYLRDGTPLDIVLSPLGVSSR 1242 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MNIGQ+LE HLG+A + K+ +++ V K R+++ Y + ++ + L++ +D Sbjct: 1243 MNIGQLLECHLGLAGVELSKKLQQIIQTYDIVGKSRKYLSMLYR---NKKELLLLNSLND 1299 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 +++ L +N+ G+PI+TP+F+ A +I LL++ L ++ + DG TG + VT Sbjct: 1300 SQIICLFKNISHGIPISTPIFNSANNFDIDNLLRISGLNIQSKVTIIDGITGVVLDNKVT 1359 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VGYMYM+KLNHL+D K+H RSTG Y+++TQQ GK++ GGQR GEMEVWAL+AYGAAYT Sbjct: 1360 VGYMYMMKLNHLIDHKIHGRSTGPYNIITQQASKGKSRNGGQRLGEMEVWALQAYGAAYT 1419 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 LQEMLT KSD R+ +N + G +P +F +L E+R LG+ + Sbjct: 1420 LQEMLTFKSDSTISRSSFLQNFIRG-KTSRIDIPRTFKLLRDELRVLGMELNF 1471 >UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z1_OEDCA Length = 672 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 223/724 (30%), Positives = 350/724 (48%), Gaps = 86/724 (11%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFDVQ 83 +Q +SF F+ + GL + PI+++ N E + Y+L P ++V+ Sbjct: 20 DFTELQRNSFLNFL------KNGLIEELSNRNPIRNHKNNIEFIFYPEYYKLKRPKWNVR 73 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTER 143 E + G +Y A L V +L+ K I+ + V +G +PLMT G F+ING R Sbjct: 74 ESILLGKSYVAELYVPAQLMDKNN-------KKIQLKWVLIGNLPLMTKRGYFIINGAAR 126 Query: 144 VIVSQLHRSPGVFFDS---------DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 VI++Q+ R PG+++ K + Y A + RG WL D Sbjct: 127 VIMNQIIRGPGIYYSEAIHQYDSFEKKNILMNQSFSRYYADFVSLRGYWLRLSVDKDQFF 186 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + + K+P L A+ E+++F N P+RL + Sbjct: 187 WAEMKKTPKIPLLWFLLAIGLN---------ERLLFRYISN-------PKRLLHNLHNSL 230 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 ++K +++ + + K N Sbjct: 231 KSKTQLALIKKLQKLQHIQLNVSNNIEKKQ----------------------------KN 262 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 +++ + K + L + L IS+ L L Sbjct: 263 KTHTIERVQKNDTHTLYQYNFLPDSSLMAWDLISKKLVKKKKMSILK------------- 309 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 ++E F + YD+ +GR+ N+ +L+ D++ L+ Sbjct: 310 --SQEQTRKWLFQRFMNPRSYDIGTIGRLALNKKFNLSISTKKHVLTPYDLLFATDYLMK 367 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 + G +DDIDHL NR++R+ E+ + Q +GL+R+E+ +K+RL+ + + +I Sbjct: 368 VEKGLKNLDDIDHLQNRKLRTASEIIQIQIGIGLIRLEKYIKDRLNQIKVF-PKIESLIT 426 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 K +++A+ EFFG+S LSQFMDQ NPL+EITHKRR+++LGPGG+T++ A +R +HPTH Sbjct: 427 TKSLNSALTEFFGTSPLSQFMDQINPLAEITHKRRLTSLGPGGITKDNATMIIRGIHPTH 486 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEG 612 YGR+CP+ETPEG N GL+NS++ YA+ N G +ETP+ KV G V I +LSA +E Sbjct: 487 YGRICPVETPEGKNAGLVNSITTYAKINSSGLIETPFYKVYKGQVMKNLGIFFLSADDEE 546 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 A+ NL G ++ + R K FSR+QV YM +S Q++S+ SL+PF E Sbjct: 547 QINTVAADINLSAFGFLPKNYIPGRKKDNFIRFSRNQVHYMSISPIQMISIATSLVPFFE 606 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 HDDANRALMGANMQRQAVP +R +P+VGTG+E DSG ++ GG+V YV A +I Sbjct: 607 HDDANRALMGANMQRQAVPLIRPKRPIVGTGVEIRSVADSGHIIESRTGGIVSYVSAKKI 666 Query: 733 VIKV 736 ++ Sbjct: 667 IVHT 670 >UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax=Euglena RepID=RPOB_EUGGR Length = 1082 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 242/806 (30%), Positives = 401/806 (49%), Gaps = 67/806 (8%) Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA---LNYTTEQILDLFFEKVIFEIR 233 I + G + F+ D ++ K+ A L+ + + +++ + +F +R Sbjct: 37 IAHEGFRISFQTDNVKY------KKPKISAEFALKNGETYSLSVHIPVEVTYNN-MFLVR 89 Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD---VKLIEVPVE 290 + + +P L E +F N ++ V + R + + +D LI Sbjct: 90 NKYILFAKIP--LMTEKGTFIFNGNKRIMVNQIIRSPGVYFEKNRYNDSIFATLIPTFGS 147 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 ++ K ID+ G + ++ ++ L+ L G R + + P ET Sbjct: 148 WLTFK------IDQDEGIFVKVDKIKTAIPLINFLKCLGLSRKKFFLY---LNDPIFIET 198 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTRE-AAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L+ + E Y++ P E R A + F +YDL VGR + N + Sbjct: 199 LQESESYGIRLEFFEFYKIFFPNEVNVRFGNARKFLRSKFMDPRKYDLGEVGRFRVNTKI 258 Query: 410 LREEI-EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 R E + + L +D++ + LI+++ G D+ID L N+ +RS+GE+ ++QFR+ L Sbjct: 259 YRSEFFQSNRTLQPEDVLGIAHYLIELKKGMIPFDEIDDLKNKLVRSIGELLQSQFRIIL 318 Query: 469 VRVERAVKERL----SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 +E ++KE+L T N+ I+ +++FF + LSQ +D N LSE+ Sbjct: 319 NELESSLKEKLIFLYKNPSEKTFRLSRFFNSYFITNRIRKFFSVNPLSQLLDDTNSLSEL 378 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKR++S GP GL +ER +VR+++ + YGRVCPIET EG N GLI SL+ + ++Y Sbjct: 379 THKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIETSEGKNAGLILSLAKDVRVDKY 438 Query: 585 GFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFV--EDLVTCRSKG 640 GFLE+P+ KV G + I+++S+ +E + +A + + + + L+ + Sbjct: 439 GFLESPFYKVLRGKIETNKGIYFISSAQEKYFTVAPFDVFRSSQSNLLDKNKLLGVKRSK 498 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 S +D++ +ST Q S+G L+PFLEH+DANR LMG+NMQRQ++ L + P + Sbjct: 499 IFSYSFSKNIDFISISTDQFTSLGTGLVPFLEHNDANRVLMGSNMQRQSLILLEKEVPFI 558 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE---------------------- 738 TG E + +S T +AK G V Y +IVI+ E Sbjct: 559 KTGREALINRESDATVLAKSSGKVIYSSLKKIVIQEEEYCANIEFFNKNYSFFNLLGCLN 618 Query: 739 -----DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 + + IY L +SN I ++P V GE V +G ++ADG ST G Sbjct: 619 EISQKNFKLIKKVNQKIYFLESPKKSNHGVYIQKIPIVHEGEWVRKGQIIADGMSTLRGG 678 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC-VSRDTKLGPEEITA 852 + LG+N+ VA++ W GYNFED++++SER+V ED FT+IH+++ + D K G E I+ Sbjct: 679 ICLGKNVLVAYLGWEGYNFEDAVIISERLVFEDIFTSIHMKKFKTFIVNDEKKG-ENISM 737 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 912 IPN + L +GI+ IG+E+ D+L+G++ K + + TP+ K+L A FG K Sbjct: 738 FIPNASLKTIKNLKNNGIIKIGSEIKAQDVLIGRI--KVKLKNTPKNKMLIAFFGNKVR- 794 Query: 913 VKDSSLRVPNGVSGTVIDVQVFTRDG 938 KD SLR P + G V V++ + Sbjct: 795 -KDVSLRSPRSLVGIVTSVEILCKKS 819 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 151/479 (31%), Positives = 248/479 (51%), Gaps = 69/479 (14%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV+ G V G I+ G T +G L + +L A G + + +D+ + +S + Sbjct: 655 IVHEGEWVRKGQIIADGMSTLRGGICL--GKNVLVAYLGWEGYNFEDAVI-----ISERL 707 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE----LQILEAGLFSRIRAVLVAGGV 984 + +FT ++K K + +E + + + ++ L+ +I + + A V Sbjct: 708 VFEDIFTSIHMKKFKTFIVNDEKKGENISMFIPNASLKTIKNLKNNGIIKIGSEIKAQDV 767 Query: 985 EAE----KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 KL P+++ L ++ + + L + ++ K+ + Sbjct: 768 LIGRIKVKLKNTPKNKMLIAFFGNKVR--KDVSLRSPRSLVGIVTSVEILCKKSNCS--- 822 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 V +++A KRRIQ GDK+AGRHGNKG+ISKI P DMP+ +GTPVD++LNP Sbjct: 823 ---------VLIHVAEKRRIQIGDKIAGRHGNKGIISKIVPSIDMPFLPDGTPVDMILNP 873 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 LG+PSRMN+GQ+ E+ L +++ + ++ +V+ ++ Sbjct: 874 LGIPSRMNVGQVFESLLNLSSLFLKERYKIQPFD-------------------EVQTSMN 914 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 +F +++ + +K L + G+ LYDGR Sbjct: 915 SKSFVYKKLNEARKRTKKD--------------------WLFNPNYPGKAFLYDGRNCRP 954 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 F+ PV GY Y+LKL H+V DK+HAR TG YS VTQQPL GK++ GGQRFGEMEVWA+E Sbjct: 955 FDHPVAFGYAYILKLIHMVKDKIHARVTGPYSSVTQQPLRGKSKNGGQRFGEMEVWAIEG 1014 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 +GAAY LQE+LT+KSDDV R++ ++++G + +P +PE+F + + E++SL I+I++ Sbjct: 1015 FGAAYLLQELLTIKSDDVLNRSEALFSLINGTYFSKPNIPEAFKLFILEMQSLCIDIKI 1073 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 75/378 (19%), Positives = 148/378 (39%), Gaps = 41/378 (10%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 LL IQ +SF+ F+++ GL R + I Q + + +P + Sbjct: 10 NLLDIQRNSFRSFLKK------GLVEELRKIKDIAHEGFRISFQTDNVKYKKPKISAEFA 63 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 G TYS + + + E + ++ + + +IPLMT+ GTF+ NG +R++ Sbjct: 64 LKNGETYSLSVHIPV-------EVTYNNMFLVRNKYILFAKIPLMTEKGTFIFNGNKRIM 116 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKL 204 V+Q+ RSPGV+F+ ++ A +IP GSWL F+ D + +FV++D+ + + Sbjct: 117 VNQIIRSPGVYFEKNRYNDSI------FATLIPTFGSWLTFKIDQDEGIFVKVDKIKTAI 170 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVE 264 P L+ L + ++ + + E + E F +V V Sbjct: 171 PLINFLKCLGLSRKKFFLYLNDPIFIETLQESESYGIRLEFFEFYKIFF----PNEVNVR 226 Query: 265 KGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST----GELICAANMELSLD 320 G + ++ L EV + K+ ++ + +++ A+ + L Sbjct: 227 FGNARKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHYLIELK 286 Query: 321 L----LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 ++ +K + ++ I L + L+ +Y+ P Sbjct: 287 KGMIPFDEIDDLKNKLVRSIGELLQSQFRIILNELE----SSLKEKLIFLYK-----NPS 337 Query: 377 TREAAESLFENLFFSEDR 394 + S F N +F +R Sbjct: 338 EKTFRLSRFFNSYFITNR 355 >UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742EB4 Length = 487 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 215/480 (44%), Positives = 318/480 (66%), Gaps = 5/480 (1%) Query: 252 SFDIEANGKVYVEKGRRITARHIRQL--EKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + D + + + + + + + D +L E+ + G V +D +DE TGE Sbjct: 7 AVDFFHTNEEIMNEFFELKEVELSEFYSKYKDTELEEILRSRLEGSFVREDVLDEETGEF 66 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 + A + + ++ K+ + +++ D I+ L D T + A++E++R Sbjct: 67 VAEAEEIIDIPVIQKIIDAKVEKLSIWEVKPEDR--IIANALVHDSTKNSDEAVIEVFRK 124 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 +RPG+ T ++A SL + +FF+ RYDL+ VGR K N+ L + +L+K+D++ + Sbjct: 125 LRPGDLVTVDSARSLVKQMFFNPQRYDLADVGRYKVNKRLKLDVPADVIVLTKEDVLQTI 184 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP 489 + + ++ +G+G DDID+L NRR+R VGE+ Q + G++++ + V+E++++ D+ TL P Sbjct: 185 EYVKNLVSGEGFTDDIDNLSNRRVRGVGELLSIQIKGGMLKMSKMVREKMTIQDITTLTP 244 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 Q ++N KP++A + EFFGS QLSQFMDQ+NPLSE+THKRRISALGPGGL+R+RAGFEVRD Sbjct: 245 QSLLNTKPLNALILEFFGSGQLSQFMDQSNPLSELTHKRRISALGPGGLSRDRAGFEVRD 304 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT-DEIHYLSA 608 VH +HYGR+CPIETPEGPNIGLI SLS Y + N+YGF+ETP+ K+ DG ++I YL+A Sbjct: 305 VHNSHYGRICPIETPEGPNIGLIASLSTYGKVNKYGFIETPFVKINDGKADFNDIRYLAA 364 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 EE IAQA++ +D++G+F+ D V CR E + +VD +DVS +Q+VSV A LI Sbjct: 365 DEEEGLFIAQADTPIDKDGNFLTDEVVCRYGDEIVHIDKSKVDILDVSPKQLVSVSAGLI 424 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 PFLEHDDANRALMG+NMQRQAVP L+ + P VGTG+ER VAVDSG +K G V + Sbjct: 425 PFLEHDDANRALMGSNMQRQAVPLLKTEAPYVGTGLERKVAVDSGAVITSKASGTVPLLH 484 >UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWJ9_MONSK Length = 2108 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 284/947 (29%), Positives = 397/947 (41%), Gaps = 214/947 (22%) Query: 599 VTDEIHYLSAIEEGNYVIAQAN---------SNLDEEGHFVEDLVTCRSKGESSLF-SRD 648 V I S+ E + + S + + R K E S D Sbjct: 1048 VRQNISLFSSELEDEIYVCTGDTLNPCLLNTSKIVANTSLFPPVFPVRHKQEFLTINSTD 1107 Query: 649 QVDYM--------DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + ++ + Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP + +K V Sbjct: 1108 ALQFIQAPTKLFTGICPIQLISIATSLIPFLEHDDANRALMGSNMQRQAVPFMTPEKAFV 1167 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG------------- 747 GTG+E A DS +A G + +VD+ I +K + E Sbjct: 1168 GTGLELQAARDSSTLVLADESGQILFVDSQSIKLKTEKHGRTFSELRSPPGTKGQRPQWG 1227 Query: 748 --------------------------IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 I Y LT +T SNQ+TC+ Q P V +GE VE+G Sbjct: 1228 KLSLDLKDQSAHPIEFSPERGGFSKEISSYELTDFTPSNQSTCLKQRPAVEIGEWVEKGS 1287 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR-------------- 827 +LADG T GE+ALG+N+ +A+MPW GYNFED+I+++ER+V ED Sbjct: 1288 LLADGSGTRDGEVALGKNVLLAYMPWEGYNFEDAIVINERLVFEDIYTSVHVERFDVDVR 1347 Query: 828 ----------------------------FTTIHIQEL-----ACVSRDTKL--GPEEIT- 851 F ++ E V+ T G E T Sbjct: 1348 NTKIIQVRNPENSFQLEDTLPENSILNIFRSLVPGEYLTRDLDIVTNKTSRNSGNENSTL 1407 Query: 852 -------------ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV----------- 887 ++P L LD +GI+ G V GDIL+GK+ Sbjct: 1408 KTSTKDSLEALESINLPPKLPPKLRHLDANGIIKPGTWVQEGDILLGKLQIGPKDNLNNF 1467 Query: 888 ------TP---KGETQLTPEEKLLRAIF----------------------------GEKA 910 TP K +T PE +LL AIF GEK Sbjct: 1468 DIKAQNTPFAQKIQTLPFPEYRLLLAIFDLQNRTPDKTLPTQTSNLEGGKLWPTTFGEKL 1527 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK------RALEIEEMQLKQAKKDLSEEL 964 S+ K+S+L +I + + + E+ + + L Sbjct: 1528 SE-KESTLPSSQDKKEQIIGEKSLSSEEGERSPLSDLSAYKNTLPSQNFGSELTSGQDTL 1586 Query: 965 QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 +L A S + K+ + R L+ + Q A Q + Sbjct: 1587 NLLAAEKSSNSGLFAHQIKNTSFKVGIGVKGRVLDYVVDGRISIFDGRQKANQNLPPRGS 1646 Query: 1025 FEK------------------KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 E ++ K G+ V ++LA K+RIQ GDKM Sbjct: 1647 RETPPGLWPSQREEREGRGGRTPFLEKHKTLIGEGFIQSAATSVSIFLAHKKRIQLGDKM 1706 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 +GRHGNKG++S I P +DMPY ++G PVD+VLNPLGVPSRMN+GQ+LET G++A Sbjct: 1707 SGRHGNKGIVSLILPPQDMPYLQDGKPVDVVLNPLGVPSRMNVGQVLETLFGLSAFY-SH 1765 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 K+ ++ + +A + + A + ++ S + G+P Sbjct: 1766 KVYRIMPFDERIAPSQSIEKNTLQENASLSLSRPETSRSLVYGHLRKLKTKAGVPPKRAE 1825 Query: 1187 FDGA------------KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + +L L D G+ L+DGRTGE F +P VGY YM K Sbjct: 1826 ISELGLQKGGYPRTLKSIKKGSQLNWLFDPNNPGKTHLFDGRTGEIFYQPALVGYSYMFK 1885 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR GEMEVWALE +G A LQE LTVK Sbjct: 1886 LIHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFGTASILQEFLTVK 1945 Query: 1295 SDDVNGRTKMYKNIVDGN-HQMEPGMPESF-------NVLLKEIRSL 1333 SD++ R +++ N +E ESF V +E+RSL Sbjct: 1946 SDEIYSRNNFLFHLMRRNWESLEKNENESFARDAIKARVAGEELRSL 1992 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 162/646 (25%), Positives = 272/646 (42%), Gaps = 140/646 (21%) Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + + E K I Y G+IPLMT+ G+F+ING RV+V+Q+ R P V+F K Sbjct: 350 MTNHFVERSTRQKKQIF--WFYFGDIPLMTERGSFIINGAPRVLVNQIIRCPSVYF---K 404 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDP-KDNLFVRIDRRRKLPATIILRALNYTTE-- 218 K + Y A + GSWL E D + L+ RID+ + PA I+L L Y + Sbjct: 405 VKLDQKNRRSYTASFLSEYGSWLRLETDRLSNRLWARIDKSPRFPADILLMGLGYVLDSE 464 Query: 219 -----------QILDLFFEKVIFEIRDNKLQMELVPERLRGETA-SFDIEANGKVYVEKG 266 L + + F + + + + + ETA + + + Sbjct: 465 NLNSVKYGLSKNEFKLNAQTLSFGKENKVVINKNIVKNSIFETASTLNSTFPASPFTSLK 524 Query: 267 RRITARHIRQLEKDDV---------------------KLIEVPVEYIAGKVVAKDYIDES 305 + +TA++I+ ++++ + P GK ++K + + Sbjct: 525 KYLTAKYIQVYQENNNLPTRQHDEREVQRPPRNGGEGSVGRTPFLDWIGKGLSKG-LQST 583 Query: 306 TGE------LICAANMELSLD-------LLAKLSQSGHKRIE----TLFTNDLDHGP--- 345 GE L N ++S + + A+L++ I+ L + Sbjct: 584 AGEKQFAKLLNKVENKKISKEQNYLWSSVSARLAEPKISSIQSPRPVLSGSIGKKFSSTK 643 Query: 346 --YISETLRVDPTNDRL---------------SALVEIYRMMRPGEPPTREAAESLFENL 388 T+ D T +AL +++ PG + S F N Sbjct: 644 NFVFKNTVENDNTRTPRRTNAGSKSGITINTATALQALWKKCNPGRWTSALGCYSFFYNK 703 Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE------- 441 F + RY + VGR++ N+ L R L+ +D++ L +++ + Sbjct: 704 FLNPKRYSIGRVGRIRLNKRLRRNPECKIPTLTPEDVLLAFHYLTELKIADAKENTFSLE 763 Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRV------------------------------ 471 +DDIDHL NRR+R GE+ +NQFR+ L R+ Sbjct: 764 LDDIDHLKNRRVRLPGEILQNQFRLALSRIPYSAIRLQDNKTNIRNEVLQQREKVQRPQG 823 Query: 472 ----------------------ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS 509 + ++++ + ++E F + Sbjct: 824 VPLEGRVGRSPPSGEAKKVEQNQNSIRKNFDSVSSSRSEDSVPPGIPAFQSTLRELFNTG 883 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 QLSQ+MDQ NPL+EITHKRR+S+LGPGG+ R++AGF VR++HP+H+GR+CPIETPEG N Sbjct: 884 QLSQYMDQTNPLAEITHKRRLSSLGPGGVGRDQAGFAVREIHPSHFGRICPIETPEGQNA 943 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 GL+ SL+ YA+ N+ GFL++P + + + + EG+++ Sbjct: 944 GLVGSLASYARINDDGFLQSPALPIENQK--SRFPFNNNNFEGDWL 987 >UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax=Bacteria RepID=RPOB_ROSS1 Length = 1229 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 218/353 (61%), Positives = 258/353 (73%), Gaps = 8/353 (2%) Query: 586 FLETPYRKVT-DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 +ETP + + VV+ E+ YLSA EE +VI QAN+ LDE F+E V+ R G+ Sbjct: 602 IVETPLKIIKIRPVVSQEVDYLSADEEDRFVIVQANAPLDEHNRFLEGTVSVRYAGDFDD 661 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 ++VDYMDVS +QVVSV +LIPFLEHDDANRALMG+NMQRQAVP LR D P+VGTGM Sbjct: 662 VPIERVDYMDVSPKQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLRPDAPIVGTGM 721 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E A DSG VAK GVV A IVI ++ Y L K+ RSNQ+TC Sbjct: 722 EYVAARDSGQVVVAKADGVVLSATADEIVILEDD-------GNERSYRLRKFMRSNQDTC 774 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 INQ P VS G+ V +GD++AD STD GELALGQN+ VAFMPW G NFED+ILVSER+V+ Sbjct: 775 INQRPIVSRGQRVRKGDIIADSSSTDNGELALGQNVLVAFMPWEGGNFEDAILVSERLVR 834 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 ED FT+IHI++ +RDTKLGPEEIT DIPNVG+ +L LD+ GI+YIGAEV DILV Sbjct: 835 EDIFTSIHIEKYEVEARDTKLGPEEITRDIPNVGQDSLRNLDDRGIIYIGAEVQPNDILV 894 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GK+TPKGET LT EE+LLRAIFGEKA +VKDSSLRVPNGV G VIDV+VFTRD Sbjct: 895 GKITPKGETDLTAEERLLRAIFGEKAREVKDSSLRVPNGVRGKVIDVKVFTRD 947 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 201/480 (41%), Positives = 257/480 (53%), Gaps = 74/480 (15%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV G V GDI + + +L + +L A + + +D+ L VS ++ Sbjct: 780 IVSRGQRVRKGDI-IADSSSTDNGELALGQNVLVAFMPWEGGNFEDAIL-----VSERLV 833 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR----------IRAVL 979 +FT +EK + ++ ++ +D+ Q L R +L Sbjct: 834 REDIFTSIHIEKYEVEARDTKLGPEEITRDIPNVGQDSLRNLDDRGIIYIGAEVQPNDIL 893 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 V + D +R L ++ ++ + L K ++ K Sbjct: 894 VGKITPKGETDLTAEERLLRAIFGEKAREVKDSSLRVPNGVRG----KVIDVKVFTRDDD 949 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +L GV + V V L KR+I GDKMAGRHGNKGV+S+I PIEDMP+ +GTPVDI+LN Sbjct: 950 VELPVGVNQRVDVLLCQKRKISAGDKMAGRHGNKGVVSRILPIEDMPFLPDGTPVDIILN 1009 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P+GVPSRMNI G + L Sbjct: 1010 PIGVPSRMNI---------------GQILETHLGWAA----------------------- 1031 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 R G +ATPVFDGA E EIKE LK DLP G+I LYDGRTGE Sbjct: 1032 ----------------ARLGYRVATPVFDGATETEIKEWLKRADLPPDGKITLYDGRTGE 1075 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 F+RPVTVGY+YM+KL HLV+DK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALE Sbjct: 1076 AFDRPVTVGYIYMMKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1135 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AYGAAYTLQEMLTVKSDDV GR K Y+ IV G E G+PESF VL+KE++SLG+++E+ Sbjct: 1136 AYGAAYTLQEMLTVKSDDVVGRVKTYEAIVKGEPIQEAGVPESFKVLIKELQSLGLSVEV 1195 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 159/389 (40%), Positives = 224/389 (57%), Gaps = 36/389 (9%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L E +F I +V V + R + ++ + + I + ++ Sbjct: 136 LMTENGTFVINGAERVVVSQLIRSPGVYFKEEKDPTSGRSLHSAKLIPSRGAWLEFETNK 195 Query: 306 TGELICAANMELSLDLLAKLSQ-----------------------SGHKRIETLFTN-DL 341 + + + + + L + I LF + + Sbjct: 196 RDVISVKVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQRGRDEEILELFAHLET 255 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 YI TL DP AL+E+Y+ +RPG+PPT + A +L E L F+ RYDLS VG Sbjct: 256 GDHQYIKATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIEALLFNPRRYDLSRVG 315 Query: 402 RMKFNRSLLREEIE----------GSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLG 449 R K N++L ++ +L DDI +++++I + NG DDIDHLG Sbjct: 316 RYKLNKNLWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLNNGTPGLRADDIDHLG 375 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS 509 NRR+R+VGE+ + QFRVGL+R+ER +KER+SL D +T P ++N +P+ AA++EFFG + Sbjct: 376 NRRVRTVGELIQQQFRVGLLRMERVIKERMSLQDPETATPNALVNIRPVVAAMREFFGGA 435 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 QLSQFMDQ NPL+E+THKRR+SALGPGGL+R+RAGFEVRDVH +HYGR+CP+ETPEGPNI Sbjct: 436 QLSQFMDQTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRICPVETPEGPNI 495 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGV 598 GLI ++S YA+ NE GFLETPYRKV V Sbjct: 496 GLIGTMSTYARVNEMGFLETPYRKVYREV 524 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 119/410 (29%), Positives = 192/410 (46%), Gaps = 66/410 (16%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NS 66 K R F + +++P L+ QL+SF+ F + GL F + PI ++G N Sbjct: 27 GKIERYSFARISNAIELPKLIETQLNSFEWF------RKEGLRELFEEISPITDFTGKNM 80 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 EL+++ Y GEP ++ EC+ RG+TYSAP+RV ++L I + ++KE E+++G+ Sbjct: 81 ELRFLDYHFGEPRYNEHECRERGITYSAPIRVNVQLRIL-------STGELKESEIFLGD 133 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 PLMT+NGTFVING ERV+VSQL RSPGV+F +K T SG+ L++A++IP RG+WL+F Sbjct: 134 FPLMTENGTFVINGAERVVVSQLIRSPGVYFKEEKDPT--SGRSLHSAKLIPSRGAWLEF 191 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRA-LNY--------------------TTEQILDLF- 224 E + +D + V++DR+RK+P TI+LRA L + E+IL+LF Sbjct: 192 ETNKRDVISVKVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQRGRDEEILELFA 251 Query: 225 --------FEKVIFEIRD----NKLQMELVPERLRGETASFDIEAN---GKVYVEKGRRI 269 + K + + +EL G+ + D N ++ + + Sbjct: 252 HLETGDHQYIKATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIEALLFNPRRYDL 311 Query: 270 TARHIRQLEKDDVKLIEVP------VEYIAGKVVAKDYIDESTGELICAANME-LSLDLL 322 + +L K+ + P + ++ D + L D + Sbjct: 312 SRVGRYKLNKNLWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLNNGTPGLRADDI 371 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRV------DPTNDRLSALVEI 366 L + + L G E + DP +ALV I Sbjct: 372 DHLGNRRVRTVGELIQQQFRVGLLRMERVIKERMSLQDPETATPNALVNI 421 >UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B8_CHLMO Length = 795 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 216/809 (26%), Positives = 361/809 (44%), Gaps = 108/809 (13%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 V +P L IQ SF +E+ GL F PI S + E+ + Y+L Sbjct: 2 LNSVYYLPDFLEIQRQSFFTLLEK------GLIDEFSKRNPITSKKKDVEVYFYPEYYKL 55 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 P + ++ +R +Y++ L + +++ + I+ + Y+G +PLMT G Sbjct: 56 TLPTYSPRQAILRCKSYTSKLYMPVQITFKK-------TNTIRLKWAYIGNLPLMTKRGH 108 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDK---------GKTHSSGKVLYNARIIPYRGSWLDF 186 F++NG R+IV+Q+ RSPG+++ K + + K Y A +I RG+WL Sbjct: 109 FILNGAPRIIVNQIIRSPGIYYQEKLYERFTDKLSDKPNVTYKR-YYADLICLRGTWLRL 167 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE---------------KVIFE 231 E D +++ + + K+P L + + IL+ E K + Sbjct: 168 EIDRDKDIWAQTKKGPKIPIYWYLIGMGLSEHIILNSILEPQRILQNLAPFTLDRKSTRK 227 Query: 232 IRDNKLQMELVPERLRG------------ETASFDIEANGKVYVEKG--------RRITA 271 R++ ++ P+ + ET++ + KG RR Sbjct: 228 KRNDYSYVKNPPDAWKEIYLELSRSPKSVETSTSATTSKDNSLYSKGSTTKDESPRRTNK 287 Query: 272 RHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE---------------------STGELI 310 R K ++ K + +++ +L Sbjct: 288 VDARNALTSKKKSLQKEASEQGRKWLFNKFMNPRAYDLSRQGRAAFNRKLGLKIDENQLT 347 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDH----GPYISETL-----RVDPTNDRLS 361 A LS + G K I+ + G I + R++ T Sbjct: 348 LTAQDLLSATDYLIKVEKGLKPIDDIDHLKNRRVRTSGELIQIQIGIAVVRLEKTIREKI 407 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR---------SLLRE 412 E+ G+ P S F+ ++ L + + ++ + + Sbjct: 408 NKTEMQFSFSLGDAPRTSRISSNFKKDSSTQKLKQLRSSTGLINDQIAPITTDITNFPTK 467 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG---EMAENQFRVGLV 469 + ++D + ++ N + + +L I S G +N R Sbjct: 468 QPIEFQTKNEDSTYVEFSRPVNPENSNIKSNSEKNL----ISSSGMVTTTTKNNTRASTK 523 Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 + + + L TL ++IN K ++A++EFFG+S LSQFMDQ NPL+EITHKRR Sbjct: 524 KTKPLLFGNLQKNQTKTLNISNLINNKSFNSALREFFGTSPLSQFMDQINPLAEITHKRR 583 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +S++GPGG+TR+ A E+R +HPTHYGR+CP+ETPEG N GL+NSL+ Y++ N G LE+ Sbjct: 584 LSSMGPGGVTRDTATLEIRGIHPTHYGRICPVETPEGKNTGLVNSLTNYSRVNSLGILES 643 Query: 590 PYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 P+ +V G+V + YLSA +E + A+ + + + R + + R Sbjct: 644 PFYRVYKGMVQKNLGLFYLSAEQEEKTKLGAADLFVSSIDFLENNNIPVRIGEKFTKIHR 703 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 + V+Y+ VS Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E Sbjct: 704 NLVEYVGVSPTQMISIATSLIPFLEHDDANRALMGSNMQRQAVPVIRPERPIVGTGLESR 763 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 DSG ++ GV+ YV + +I+++ Sbjct: 764 AVSDSGHVIQSRFSGVITYVSSDKIIVRT 792 >UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain (Partial sequence n terminus) protein (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5RWZ2_RALSO Length = 587 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 254/441 (57%), Positives = 331/441 (75%), Gaps = 6/441 (1%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR V VP+LL+ Q+ S+ +F+++ GL+AAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + +++VSY L P FDV+ECQ RG+T+ + LR K+RL+I +RE P VK+ Sbjct: 61 FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPTK-VKE 119 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKEQEVYMGEIPLMT G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 120 IKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 179 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDF+FDPKD L+ R+DRRRK+P TI+L+++ T EQIL FF F ++ + Sbjct: 180 IPYRGSWLDFQFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDG 239 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ME VPERLRGE A FDI + NGKV +EK +RI A+HIR L+ KLI VP +Y+ G+ Sbjct: 240 ALMEFVPERLRGEVARFDISDKNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDYLLGR 299 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 V+AK+ +D TGE++ AN EL+ +L KL +G K I+TL+TNDLD GPY+S+TLR D Sbjct: 300 VLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTLRTDD 359 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T D+ +A + IYRMMRPGEPPT +A E+LF+ LF++ED YDLS VGRMK N L R E Sbjct: 360 TVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLNRSEGT 419 Query: 416 GSGILSKDDIIDVMKKLIDIR 436 G +L+ DDI+D +K L+++R Sbjct: 420 GPMVLTDDDILDTIKLLVNLR 440 >UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=Q8I5X9_PLAF7 Length = 1450 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 207/1097 (18%), Positives = 400/1097 (36%), Gaps = 193/1097 (17%) Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTNDRLSALVEIYRMMRPGEPPT 377 +L + + I + + ++ I +L + L AL+ I + +RP Sbjct: 456 ILRAMGYESDQEIFQMIGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRP----- 510 Query: 378 REAAESLFENLFFSEDRY--DLSAVGRMKFNRSLLREEIEGSGIL---SKDDIIDVMKKL 432 R A+ F ++ + + D+ G +R LL + S I +++++ Sbjct: 511 RLLAKGFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRV 570 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL------------- 479 +D N K E+DD D+ GN+R+ G++ F R +K+++ Sbjct: 571 LDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYN 630 Query: 480 ------------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 + D+ +P+D+I +A G+ + +F + + +S++ Sbjct: 631 SKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAIST---GNWNIKRFKMEKSGVSQV--L 685 Query: 528 RRISALGP-GGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 R+S + G +TR + FE R + P+ +G +CP +TPEG + GL+ +L++ Sbjct: 686 SRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMT 745 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYVIAQANSNL---DEEGHFVEDL 633 ++ + ++ L+ E EG + + L F++ + Sbjct: 746 HVTNDNENNENLIEILYTLGVEDSDSLTGEEIYKEGVFFVILNGILLGVHKRPQKFMQRI 805 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN--------- 684 R G+ F +++ + G P + ++ L+ + Sbjct: 806 RYLRRYGKIGQFVSIYDNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIKALENGTI 865 Query: 685 ----MQRQAVPT---LRADKPLVGTGMERAVAVDSGV------TAVAKRGGVVQYVDASR 731 + + +V + L+ E +++ + T + G++ Y + ++ Sbjct: 866 NFFDLLKSSVIEWIDVNEQNNLLIALNESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQ 925 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN---QMPCVSLGEPVERGDVLADGPS 788 + M G+ I ++ R + + Q P V Sbjct: 926 SPRNTYQCAM--GKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEF---------- 973 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 + +L GQN VA M + GY+ ED+I++++ + + +++ + + G Sbjct: 974 INFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFNGSN 1033 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 +I P V + E I D + K + K Sbjct: 1034 DIVLPSPLVINKLQQQRKEREIKSEIKNEKEKDGI--KQEHHHNNIDSKNNKSSYNNNVS 1091 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 K +VK S N ++ +I++M K +K S ++ + Sbjct: 1092 KIDNVKKDSYGHKN-----------------ISNESKDDIKKMANKDIRKYHSLDMDGVA 1134 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKK 1028 + + L + + +D ++ + D + + +K Sbjct: 1135 SIGYLIKEGQLYVNKFSPKNIKDHVKD-IGKVDINDFKINE-----IKYKSVYPSYIDKI 1188 Query: 1029 LEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 + + + LK+ K+ + R + GDK + RHG KGV+ + EDMP+ Sbjct: 1189 IFTENSE----------GLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFT 1238 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 E+G D+++NP G PSRM +G++LE AA G+ Sbjct: 1239 ESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGE---------------------- 1276 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 + G + F EI E+L S Sbjct: 1277 ---------------------------YKYGSIFSGTPF-----EEIAEILFRYGFNCSS 1304 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 + LY G TGE E + +G +Y KL H+V DK+HAR+ G L+T+QP G+++ GG Sbjct: 1305 KELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGL 1364 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVN----------GRTKMYKNIVDGNHQMEPG 1318 R GEME L AYG + L E L + SD N G + + Sbjct: 1365 RLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGMMGYDLYCTFCKKCDKNIVIQ 1424 Query: 1319 MPESFNVLLKEIRSLGI 1335 MP + +L +E++++ + Sbjct: 1425 MPYACKLLFQELQTMNV 1441 >UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=Firmicutes RepID=D0V9L6_9BACI Length = 481 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 183/530 (34%), Positives = 285/530 (53%), Gaps = 70/530 (13%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 10 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V+E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 64 LEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F GK +GK + A +IP RG+WL++E Sbjct: 117 PIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGFTATVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFE--------IRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL + + ++ILDL E +K Sbjct: 174 TDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKAL 233 Query: 239 MELVPERLRGETASFDIEA---NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +E+ GE + + + + + K + ++ K + + Sbjct: 234 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLH-----IKNRLFNQ 288 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A+ +D TGE++ L L K+ L++G + L + Sbjct: 289 RLAETLVDPETGEILAEKGQILDRRTLDKV------------LPYLENGIGFRK-LYPNG 335 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 +++ ++ P + A G N E Sbjct: 336 GVVEDEVMLQSIKIYAPTD------------------------AEGEQTINVIGNAYIEE 371 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 ++ DII + ++ +G G+ DDIDHLGNRR+RSV E+ +NQFR+GL R+ER V Sbjct: 372 AIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVCELLQNQFRIGLSRMERVV 431 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 +ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 432 RERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 481 >UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54649 Length = 440 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 210/440 (47%), Positives = 286/440 (65%), Gaps = 27/440 (6%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 SQLHRSPGVFFD D+GKTH+SGKVLYNARIIPYRGSWLDFEFD KDNLF RIDR++K+ Sbjct: 1 CCSQLHRSPGVFFDHDEGKTHASGKVLYNARIIPYRGSWLDFEFDHKDNLFFRIDRKKKM 60 Query: 205 PATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDNKLQM 239 +T IL+AL T+E+IL F+E F+ + N + Sbjct: 61 ISTTILQALPSKASEKYLEECHQNKVDPDIYKVSGMTSEEILTYFYETFTFKKQKNGWVV 120 Query: 240 ELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 L + + + F++ + ++ K +++ + +++++ V E + G + Sbjct: 121 NLDLNKFKYKNLPFNLVDPLSKEIVAHKDVKLSLKLLKEIKDKKVSKFFFTEEDLYGFYL 180 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 + D ++ G + A LS + +L++ + + N I +L D N Sbjct: 181 SNDIVNYDNGLVYAEAGTLLSKEFFERLNELSIDQFSVVNANQATGNLGIINSLVADKNN 240 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 R AL +I++++RPGEPPT EA+ LF+N+FFSEDRYDLS VGR+K N L ++ S Sbjct: 241 SREEALFDIFKILRPGEPPTLEASNYLFQNMFFSEDRYDLSEVGRVKLNSYLSLDKTNKS 300 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 ILSK D++ V KKL D++ DDIDHLGNRR+RSVGE+ ENQ+R+GLVR+ERA++E Sbjct: 301 RILSKSDVLAVAKKLFDMKTESAGKDDIDHLGNRRVRSVGELIENQYRIGLVRMERAIRE 360 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 ++ D++++MPQD++N+KPI +KEF G+SQLSQFMDQ NPLSEITHKRRISALGPGG Sbjct: 361 KMGTVDIESIMPQDLVNSKPIQTVLKEFTGTSQLSQFMDQTNPLSEITHKRRISALGPGG 420 Query: 538 LTRERAGFEVRDVHPTHYGR 557 LTRERAGFEVRDVH THYGR Sbjct: 421 LTRERAGFEVRDVHTTHYGR 440 >UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax=Eimeriorina RepID=RPOB_EIMTE Length = 1059 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 170/729 (23%), Positives = 316/729 (43%), Gaps = 39/729 (5%) Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 +IL +F I +++NK + + L GE + IE N + K I+ Sbjct: 78 NSKIL-IFLPLKIKNLKNNKYK---IIYYLLGEIPKYTIEKNLIINGLKKTFISKLMFNY 133 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKD-----YIDESTGELICAANMELSLDLLAKLSQSGHK 331 + K I+ + K++ D + E N + DL+ L G Sbjct: 134 IGIFFNKFIKNNNNILYAKIIFNDKFIINIVLEENKCYCIFNNYK--YDLICFLYLLGIS 191 Query: 332 RIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFS 391 + + + Y+ + L P+ + + + S F NL F Sbjct: 192 MQDIFIFSRYNKSFYLKKLLLTLPSLNINNIINY-----------NIFKYLSFFFNLSFK 240 Query: 392 EDRYDLSAVGRMKFNR-SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN 450 + Y + K N + S L D I+++ L+DI+ K + D+D L Sbjct: 241 LNTYYIFNKVLNKNNSLYSYIKNFSNSNNLIALDFINILDILLDIKYNKKNITDLDLLEY 300 Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFFGS 508 R I ++G NQ+ L + + + + +L+ + +KE+ Sbjct: 301 RSIFTLGNYFTNQYSFYLKKFSNILHNDIFKCIKNLEKYKLNTNSFKSKLYFNLKEYLTV 360 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 + L Q+++Q N SEI HK R++ ++ + ++R+++ G +C I+T EG N Sbjct: 361 NPLVQYLEQINSFSEIIHKNRVTNYN----SKLKQNLQIRNINLNQLGSLCLIDTTEGIN 416 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 GL+ S + + + + PY V + + I ++++ + Y++ N L + Sbjct: 417 CGLVISFTKNIKIEKRNNFQFPYLPVLNIKTKNFITFINSFLQQTYIVLFNNYYLRKNKL 476 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 F +K L + + + + + S +LIPF+ ++D R LMGA MQ Q Sbjct: 477 F-NFFNLSLNKNSFKLKNISIQNMIYIKPMDMFSFAENLIPFIFYNDPARVLMGAKMQSQ 535 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 VP L+ + ++ TG E+ + + + A + G+V YV + +I+I+ ++Y + Sbjct: 536 IVPILKNKRSIIITGYEKNLLNSTNLILKAYQEGIVVYVSSYKIIIR----DLYNRKI-- 589 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 Y L KY RSN T ++ P V GE + G +L E G N+ V++ + Sbjct: 590 -TYFLDKYKRSNHFTILHSKPNVWQGERIFCGQILTSTQDILFSEYIGGNNLLVSYGNFF 648 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRD-TKLGPEEITADIPNVGEAALSKLDE 867 GYNFED+I+++++++ FT++H + + K E T ++P + LD Sbjct: 649 GYNFEDAIVLNKKIIYSQLFTSLHFKVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDF 708 Query: 868 SGIVYIGAEVTGGDILVGKVTPKG-ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 GI+ G++V DILV K+ L P L+ +FG++ ++KD S+ V G SG Sbjct: 709 FGIIKEGSKVLNNDILVSKIFITNINISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSG 768 Query: 927 TVIDVQVFT 935 ++ ++F+ Sbjct: 769 RIVKTELFS 777 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 110/411 (26%), Positives = 183/411 (44%), Gaps = 48/411 (11%) Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAK---KDLSEELQILEAGLFSRIRAVLVAGGVEAE- 987 +V+ +K + EI + L + K + I++ G +LV+ Sbjct: 674 KVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDFFGIIKEGSKVLNNDILVSKIFITNI 733 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 + LP + + E K + + + + + +L + KI G Sbjct: 734 NISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSGRIVKTELFSYSSKI----KSYLGYY 789 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 +VY+ +R + GDK+ GR+GNKG+I+ I P D+PY G DI+ + LG+PSRM Sbjct: 790 LKCRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNTGIIPDIISDSLGIPSRM 849 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 NIGQ+ E G++ + ++ ++ + + + Sbjct: 850 NIGQLFENLFGLSCYFLNKRLCISNTFNLPKVYIKTILYNYINNIKEKSGN--------- 900 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 L + + + G+I L DGR G + P + Sbjct: 901 -------------------------------LWIYNSYSPGKILLRDGRQGYKLSEPSFL 929 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G KL H++ DK+H R+ G Y+ + QQP+ G+ + GGQRFGEME+WA+EAYG++Y L Sbjct: 930 GISKYSKLIHMIKDKIHYRTIGPYTELMQQPVKGRNKKGGQRFGEMEIWAIEAYGSSYNL 989 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 +E+L KSDD+ RT + N+ + ESF L++EI S+ +NIE Sbjct: 990 RELLNYKSDDIIARTSLLSNLDNNIILDNITTTESFRTLIREIHSMNLNIE 1040 >UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF17_TRIAD Length = 617 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 172/316 (54%), Positives = 231/316 (73%), Gaps = 10/316 (3%) Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 TCINQ P V +G+ VE GD+LADG STD+GELALG+N+ VAFMPWNGYNFEDSIL+SER Sbjct: 302 GTCINQRPIVKVGQYVEAGDILADGASTDMGELALGKNILVAFMPWNGYNFEDSILLSER 361 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 +V++D +T++HI E V+RDT+LGPEEIT DIPNV E L+ LDE+GIV IGA+V GD Sbjct: 362 LVKDDIYTSVHINEYEIVARDTRLGPEEITRDIPNVNEENLTHLDETGIVNIGAQVKPGD 421 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 ILVGKVTPK E+ LTPEEKLLRAIFGEKA+DV++SSLRVP G G ++DV++FT+ GV+K Sbjct: 422 ILVGKVTPKTESPLTPEEKLLRAIFGEKAADVRNSSLRVPPGEKGVIVDVKIFTKRGVQK 481 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV----------EAEKLDK 991 D+RA+ IE ++++ KD+ +E +I+E +F++++ +L V + LD Sbjct: 482 DERAISIERNEIEKFSKDMEDEKRIIEDYVFNKVKVILFGKKVKDKSNKSITIDQNFLDD 541 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 L + L L D++ + +++L E YD + EK + K K+ GDDL GVLKI+K Sbjct: 542 LDNKQVWSLELDDKKSKEDIQKLEEFYDNYLKKLEKDYKHKVEKLQSGDDLPQGVLKIIK 601 Query: 1052 VYLAVKRRIQPGDKMA 1067 +Y+A K +IQPGDKMA Sbjct: 602 IYVANKLKIQPGDKMA 617 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 132/292 (45%), Positives = 203/292 (69%), Gaps = 1/292 (0%) Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV-EYIAGKVVAKDYIDESTGELICAAN 314 ++ +KG R+T R ++ EK++ + + I K +AKD ++ +TGE++ + Sbjct: 10 ANTKEIIFKKGIRVTPRILKDFEKNNTDRYYITTEDDIKRKFLAKDIVNLTTGEVLYEST 69 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 E++ +++ + I + N++D G +I +T+ +D D AL +IY+++RPGE Sbjct: 70 QEVTQEIIDSVKALNINEIVIIDVNNVDSGSFIRDTIVLDKNKDEEQALADIYKVLRPGE 129 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 P T E A+ LFE++FF ++YDLSAVGRMK N+ + + L+KDDII ++K L++ Sbjct: 130 PSTPEVAKQLFESMFFDNEKYDLSAVGRMKINKKHDLDVPHTTTALTKDDIIVIIKHLLN 189 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 ++ G G VDDID L NRR+RSVGE+ ENQFR+GLVR+++++ +R+S ++D +MP D++N Sbjct: 190 LKCGIGTVDDIDSLANRRVRSVGELVENQFRMGLVRMQKSIVDRMSSVEIDNVMPHDLVN 249 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 +K + + ++EFFG SQLSQFMDQ NPL+EITHKRR+SALGPGGLTRERAGFE Sbjct: 250 SKTLMSYLREFFGISQLSQFMDQTNPLAEITHKRRLSALGPGGLTRERAGFE 301 >UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=A8B827_GIALA Length = 1235 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 195/1069 (18%), Positives = 360/1069 (33%), Gaps = 217/1069 (20%) Query: 359 RLSALVEIYRMMRPGEPPT-REAAESLFENLFFSEDRYDLSAVGR--MKFNRSLLREEIE 415 R+ A++ + R ++ F + DRYDL+ V + F + LL + Sbjct: 290 RVEAMLRDFHKYRIFSHKACKQLLGGKFRMILSLLDRYDLTDVDCCDLLFEQYLLINIPK 349 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + + + +K + + + D D L ++ + G + + L+++ R V Sbjct: 350 EDTRAKFNMMCLMARKCLLLFGSFIKPDSPDLLSSQEALTPGAFFKAEVTSTLIKIMRLV 409 Query: 476 KERLSLG------DLDTLMPQDMINA----KPISAAVKEFFGSS--------------QL 511 + +L I + +P+S+ ++ G L Sbjct: 410 SRNATSTGAIGSYELSNSWISHYIASPKLWRPLSSGLRSLAGPGVMRAYKGHDYSNMSGL 469 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 S D+ N + + H R + G +R ++P YG C + TP+G G+ Sbjct: 470 SVLADRINYVRFLAHFR---CINRGNAFATHKITSIRKLYPESYGFQCAVHTPDGAPCGI 526 Query: 572 INSLSVYAQTNEYGFLETPYR-KVTDGVVTDEIHYLSAIEEGNY--VIAQANSNL--DEE 626 + L A TP ++ + + LS Y + + L + Sbjct: 527 LTHLCYKATV----LSSTPTTDQIANLFILLAQFGLSPSLSDIYSLCVVLNGTILGYLDT 582 Query: 627 GHFVEDLVTCRSKGESS--LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 LV C + +F +V +++ + + G M + Sbjct: 583 NERAIQLVACIRAAKVKSIIFPYTEVVFIEKGNKDHLFPG--------------IYMNTS 628 Query: 685 MQR--QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV------------------V 724 M R + V +L + P T +E + + + R GV V Sbjct: 629 MGRFYRPVHSLTNNSPEYITPLE-QIFLQIAIYGDDVRLGVTTHQEITPTSLLSILGLLV 687 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLT-KYTRSNQNTCINQMPCVSLGEPVERGDVL 783 + D ++ + E +M GI NL KY + Q P V R ++ Sbjct: 688 PFSDHNQSPRNMYECQMLKQTMGIPCRNLAYKYDTKSYLLTTPQKPLV-------RNAII 740 Query: 784 AD--GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 D G T G N+ VA + Y+ ED+ L+++ ++ F Sbjct: 741 HDIGGFDTH----PTGTNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVYSVHDIDCY 796 Query: 842 DTKLGPEEIT-------------ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 D KL T + ++ E ++LDE G+ +GA ++ G + Sbjct: 797 DDKLMRYMRTVATAVPYLKRSPDYIVTHMDENYDTELDEDGLPPVGAYLSHGSV------ 850 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDS-SLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 F + K S ++ + G V V V + + Sbjct: 851 -----------------FYQTYDPTKQCYSTKLYHHEPGFVEKVIVIHKSAAK------- 886 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV-AGGVEAEKLDKLPRDRWLELGLTDEE 1006 E + R AG + LD D + Sbjct: 887 --------------GEYWTDNDIATKKKRDSSFPAGDSNSSNLDNDASDDEISNQPGSGS 932 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV--LKIVKVYLAVKRRIQPGD 1064 + N+ Q A H + + ++ R+ T+ + + ++ V++ + R GD Sbjct: 933 ESNEDNQTATP---RSHASKAERKSSRQLQTRARTESSSLHFIQRVRIVIRHDRTPVVGD 989 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K+A RHG KG++ DMP+ +G D+++NP PSRM +G ++E+ Sbjct: 990 KVASRHGQKGIMGIRWRQTDMPFTSSGIVPDLIINPHAFPSRMTVGMLIESLASKIGVHY 1049 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 D +++ Q + + Sbjct: 1050 ADFVDSSPFQWSDERR-------------------------------------------- 1065 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 A + ++LLK G G +Y TG+ + +G +Y +L H+V DK Sbjct: 1066 -----AIDVFGEQLLKTGQFNRYGSEVMYSAITGDPMPADIFIGVVYYQRLRHMVSDKYQ 1120 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK- 1303 R+ G +T+QP+ G+ + GG RFGEME AL A+GA +L+ L +SD Sbjct: 1121 VRAEGPSDKITKQPIKGRKRGGGLRFGEMERDALLAHGAMASLRGRLCTESDATEHVVCA 1180 Query: 1304 -------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + H +P VL ++ ++G+ + Sbjct: 1181 ACGSLLGMQLGGSVCRECKATGHGRLIQIPMVLLVLANDLAAMGVRMRF 1229 Score = 43.5 bits (101), Expect = 0.064, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 23/135 (17%) Query: 33 DSFQKFIEQDPEGQYGLEAAFRSVFP-IQ---SYSGNSELQYVSYRLGEPVFDVQECQIR 88 +SF FI+ L P I S S +++ V+ + P F + Sbjct: 59 NSFNDFIDS-------LNTTIIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFTPAFARET 111 Query: 89 GVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT---ERVI 145 Y PL V L++ + P I G++P+M + +++G ER+ Sbjct: 112 RANYCGPLHVTLKV----SDGPMSKTVVINA-----GDVPVMVGSKLCLLHGKTREERIR 162 Query: 146 VSQLHRSPGVFFDSD 160 + + R G +F S+ Sbjct: 163 LREDERDAGGYFISN 177 >UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Tax=Sarcocystidae RepID=RPOB_TOXGO Length = 1051 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 167/745 (22%), Positives = 311/745 (41%), Gaps = 58/745 (7%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD------IE 256 K+ L + Y I +F ++ NK+ L E ++ + Sbjct: 62 KVNNINFLDNVQYINSLI-KIFLPLKFQNLKTNKV---FFKNLLIFELPKYNSYNYCYLN 117 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 K+++ K + K + + +D ++ + Sbjct: 118 GLKKIFISKYFTSNGIFFNKYLKRKYNIYYAKLLLTNSNFFN-IILDLKLKQIYLSIKN- 175 Query: 317 LSLDLLAKLSQSGHKRIETL----FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 L + + L G K + L + N I L+ D N++ L + Sbjct: 176 LKFNFILFLYYLGIKNTDILKYSRYKNSKILKLLIFSALQTDLVNNKKIILKNL------ 229 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 L Y + + K N + L D I ++ L Sbjct: 230 -------NYLKSIFKLTILNKNYKNFIISKDKLNYNYG---DFSKNNLLIIDFIFILDLL 279 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM 492 +D+++ K IDHL N+ I ++G ++ F+ L + + + L L + Sbjct: 280 LDLQSKKLCFKTIDHLDNKHINTIGNYFQHNFKFYLKKFISIIPNLIKLQKFSLLKVYN- 338 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 KE + L Q+++Q N SE+ HK +++ + + +R++ Sbjct: 339 ---------FKELLILNPLIQYLEQINSFSELMHKYKLNNYN----SFSKGILNLREICL 385 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG 612 G++C I+T EG N GL+ S + + + + G ++ + + + +++ +++++ Sbjct: 386 NQLGKLCLIDTTEGINCGLVVSFAKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQE 445 Query: 613 NYVIAQANSNLDEEGHFVE-DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 Y+I N NL + + + LV ++ FS + ++ + + S +LIPF+ Sbjct: 446 LYLIQFNNINLRKIKYLMNVRLVYNKNNFRIKFFSNKKSILLEFT--DLFSFTENLIPFI 503 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 +++D R LMGA MQ Q+VP L K V TG E+ + S T A + G+V + + Sbjct: 504 KYNDPARCLMGAKMQSQSVPLLNKKKSFVITGYEKEIITKSDTTIKALQEGIVLNASSLK 563 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 I IK +++ E +Y L+KY +SNQNT I+Q P V GE V +L Sbjct: 564 IHIK----DLFNREI---VYYLSKYKKSNQNTIIHQKPLVWNGERVFTNQLLTQHQDIID 616 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV-SRDTKLGPEEI 850 E A+G N+ + + GY+FED+++VS+RV+ + F+++H+ + + E Sbjct: 617 SEFAIGNNLLFYYGNFCGYDFEDAVIVSKRVLYQQLFSSLHMDIYEFNFCYNNENDIEFS 676 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV-TPKGETQLTPEEKLLRAIFGEK 909 T +IP LD GI+ G ++ G IL+ K+ K KL+ +IFG+ Sbjct: 677 TLEIPKQSYYIKKNLDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLIYSIFGKT 736 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVF 934 ++KD+SL + G SG V +++F Sbjct: 737 IRNIKDNSLYIQTGKSGRVSKIELF 761 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 110/402 (27%), Positives = 175/402 (43%), Gaps = 40/402 (9%) Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-GVEAEKLDKLPRDRWL 998 E D +E + K + L I++ G ++L+ V + + Sbjct: 670 ENDIEFSTLEIPKQSYYIKKNLDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLI 729 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 + + L Q + + +L ++++ +R Sbjct: 730 YSIFGKTIRNIKDNSLYIQTGKSGRVSKIELFLVNISSRHKYKTYNNSYLKCRIFICKQR 789 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 + GDK+ GR+GNKG++S I D+P+ +N DI++ LG+PSRMN+GQ+ E +G Sbjct: 790 FLTVGDKLCGRYGNKGILSYIAENADLPFLQNSFYPDIIVGALGIPSRMNLGQLFEALVG 849 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 + +I L N K Sbjct: 850 KISFSYNIRILPSFTTSSN----------------------------------LYFNYLK 875 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 + +F+ K K L + G+ + DGRTG + + V G KL HL Sbjct: 876 ILIYNFLMFNNFK----KGFNWLYNFNLPGKFIIRDGRTGVKLKSSVLCGVSRYSKLIHL 931 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 + DK+H R+TG Y+ + QQPL GK GGQRFGEME+WALEA+GA+Y L+E+L KSDD Sbjct: 932 IKDKLHFRTTGPYTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYNLKEILNYKSDDC 991 Query: 1299 NGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGINIEL 1339 R + + ++ N +++ + ESF V+LKE L +N+EL Sbjct: 992 FARNNLKEYLLFRNTELQNSTITESFRVILKEFNGLILNLEL 1033 >UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax=Marseillevirus RepID=D2XA39_9VIRU Length = 1277 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 188/992 (18%), Positives = 370/992 (37%), Gaps = 150/992 (15%) Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + ++ + + ++ G + +D DH N+R+ V + N F + + +K+ G Sbjct: 357 FMCYMLARALKVKTGDRQPEDRDHYTNKRVDCVDSLLNNLFYSMWNQTTKFIKDS-CKGK 415 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLS------------QFMDQNNPLSEITHKRRIS 531 T P I +K I+ ++ + S Q ++ N ++ ++ R++ Sbjct: 416 ERTADPLKPIRSKSITKKIRTAMSTGNWSSFNTKSKKQGTSQNYERYNIVASCSNLRKVH 475 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP-NIGLINSLSVYAQTNEYGFLETP 590 A + E + R VH + YG +CP +TPE GL L++ A + +E Sbjct: 476 A----AIGTEGNMTKPRRVHESSYGFICPPDTPESKDKTGLSKVLALSATMSLGCTVEEC 531 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFS 646 + + + Y S + G N + D + +L + G+ Sbjct: 532 FE------ILSALEYFS-QDFGLETFVFLNGVIMGSTDSPKELIGELSVLKRAGDF---- 580 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 + D F+ + N + + R P + + + G E Sbjct: 581 -----FWDCC-------------FVFDEKHNEVRVNCDAGRLIRPLMVVEGGKLRFGPEH 622 Query: 707 AVAVDSGVTAVAKR--GGVVQYVDASR---IVIKVNEDEMYPGE----AGIDIYNLTKY- 756 + G + G+V+ +DA + +I + +++ E +I+ L Y Sbjct: 623 YERLMKGTITWQEFIGLGIVEILDAEQQEHSLICPSAEQLGQSESKEWTHCEIHPLLVYG 682 Query: 757 -----------TRSNQNTCINQMPCVSLG------------EPVERG--DVLADGPSTD- 790 S + + M S+ + V L ++ Sbjct: 683 VCASIIPYSANNPSPRLSYFASMAKSSVAVPRLDFGIAPFDQHVLHYPQKPLTSTKASRL 742 Query: 791 --LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 + + + QN+ VA ++G+ ED+I+ + Q + H+Q + K Sbjct: 743 LGMNKSPICQNLVVAVCSYDGFGQEDAIVACKAFTQRGGMVSDHVQNYVAIIDHEKEQIS 802 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 + ++ G +V K+ P+ ++ P + I Sbjct: 803 PSRCSDVEFSSSCQRFWCKN----CGKKV--------KLCPECGSEYVPSFSGHKGIVCR 850 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVF-TRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 K D + + VF R+ + + KR + ++ + K++ + + L Sbjct: 851 KKEDER----------RAFIDRQTVFWNRNPINRIKRKVVVDGEE-----KEVDNQKKFL 895 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 + L E +LD L + +E+G E+ + + K E Sbjct: 896 G----KKKWDCLCEEVEELPRLDHLDPEGVVEVGEVVEDGDILIAVAGVSGAKRKDESIY 951 Query: 1028 KLEAKRRKITQGDDLA-PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 + KR ++T P ++V +A R + GDK H KGV S +DMP Sbjct: 952 FGKDKRGRVTSVSYFQNPNGYLCIRVAVASTRIPETGDKATSFHSQKGVFSLFVEEQDMP 1011 Query: 1087 YDENG---TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 + + T D ++NPL PSRM IGQ E++ G K+ A ++ + E Sbjct: 1012 FTSDAFSATHPDFLINPLAFPSRMTIGQPKESNTG--------KMTASAYRELPDSHRFE 1063 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR--KGMPIATPVFDGAKEAEIKELLKL 1201 + L A ++++V + + +E+ + + G F + +++ LK Sbjct: 1064 YENLYRTLSARIQKEVPEAEEAAKELEKRNPKTKGYSGSYTDCTPFTSNYQV-VEDELKR 1122 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G+ DGRTG++ E + VG + +L H+V DK+HAR+TG +T+QP G Sbjct: 1123 RGYAPGGKEFFIDGRTGKKMEVSLFVGLVPYNRLKHMVIDKIHARATGKIQSLTRQPTEG 1182 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD-------------VNGRTKMYKNI 1308 +++ GG + G ME +L GA + L++ L + D V + K Y Sbjct: 1183 RSRNGGLKTGIMERDSLVGNGAVFCLRDRLFLSCDKFEVWVCESCGLIAVESKEKKYCRA 1242 Query: 1309 VDGN-HQMEPGMPESFNVLLKEIRSLGINIEL 1339 G + ++ +P + + +E+ ++GI + Sbjct: 1243 CHGKSNVVKLAVPYATKLSFQELMAMGITPRI 1274 >UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEV5_CHLKE Length = 1312 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 164/613 (26%), Positives = 269/613 (43%), Gaps = 42/613 (6%) Query: 154 GVFFDSDKGKTHSSGKVLYNARII--PYRGSWLDF---EFDPKDNLFVRIDRRRKLPATI 208 G+F K K+ K ++ I+ P W+ F E D K L + + Sbjct: 50 GLFRSLKKKKSFIFRKSIHKLEIVLFPE---WIQFKKPELDSKKALHFGKTYGSYIYIPV 106 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 +++ + ++ + + + + +P + + + N +Y+ Sbjct: 107 LVKFSGWKKNKLEWILLGFLPLLTKQGHFIINGIPRVVLHQ-----MIRNPGIYILSKDS 161 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 T ++ + I + ++ + ++ + LI L L Sbjct: 162 KTRVATIRIVPEQGSWINITIDKKYRIWITTRFLRKKISVLIFLQA--LGFSLSEIYKNL 219 Query: 329 GHKRI-ETLFTNDLDHGPYISETLRVDPTN------DRLSALVEIY------RMMRPGEP 375 G+ + + F +L + N + A +Y + Sbjct: 220 GYSELLQVSFVKELQPDEKTRNDRILIRANLWRHPVTQKQAQRYLYAHYLEYSSQTREQV 279 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 T + A+ F ++ ++ +GR +F L L+ DDI K + + Sbjct: 280 VTDQTAQEFFLKNVWNYKNRNIGYLGRKQFREKLGSTLSITETWLTADDISLATKASLKL 339 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL-----------GDL 484 + DDID+L N+R+R GE ++ GL E + + S + Sbjct: 340 LCNEQVADDIDNLDNKRVRGCGEFLYDELNSGLQEFEHVLNRKFSNISISSKNSIFGNEC 399 Query: 485 DTLMPQD-MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 T + + +K IS + K FF LSQFMD+ NPL+E THKRR++ LGPGG++ ++ Sbjct: 400 ATFWRFNRSLLSKYISKSWKNFFTGGTLSQFMDETNPLAETTHKRRLTVLGPGGVSGKQT 459 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 ++R +HPT+YGR+CPIETPEG N GL+NS +VY Q N G LETP+ +V G + E+ Sbjct: 460 TIQIRGIHPTYYGRLCPIETPEGQNAGLVNSFTVYTQRNSQGILETPFFEVYKGQIQKEL 519 Query: 604 --HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 HYLS E V+A A+ L + + R + +Q+ + Q++ Sbjct: 520 KAHYLSPQTESYLVLAPADICLSPWNQLPKTDLPVRKNWKFEYTIWNQISKQSIGLLQMI 579 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 SV SLIPFLEHDDANRALMG+NMQRQAVP LR + LV TG+E V D + + Sbjct: 580 SVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPENALVSTGLETRVISDVNHGIRSSKT 639 Query: 722 GVVQYVDASRIVI 734 G + V +++I + Sbjct: 640 GYITAVSSTKIQL 652 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 152/400 (38%), Positives = 213/400 (53%), Gaps = 51/400 (12%) Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP---------RDRWLEL 1000 +++ + KD+ +LQ L + I + + G K+ L ++ + Sbjct: 935 PLEIDASSKDI-LQLQRLNSNGLIEIGSWVEEGDYLVGKISPLSPKGPSIYKQYEKLYNV 993 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 + + L + ++ + + V++ L KR I Sbjct: 994 IWQRDNPTFKNTSLRVPKGVEGFVLDVQILPPKETDVLPL-APKNAILRVRIALLQKRNI 1052 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 Q GDKMAGRHGNKG+ISKI P +DMPY +G P+DIVLNPLGVPSRMN+GQILE+ LG A Sbjct: 1053 QVGDKMAGRHGNKGIISKILPCQDMPYLPDGNPIDIVLNPLGVPSRMNVGQILESLLGFA 1112 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 K + + L + GA+ + + S + + Sbjct: 1113 GKYLHESYKIELFDE--------------KFGAEASRSLVYSKLYEASLKTANP------ 1152 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 L + G+I+L+DGRTGE F++PVTVGY YMLKL HLVD Sbjct: 1153 -------------------WLFEPQHPGKIKLFDGRTGESFDQPVTVGYAYMLKLIHLVD 1193 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 DK+HAR+TG YS VTQQP+ G+A+ GGQR GEMEVWAL+AYGAAYTLQE+LT+KSDD++G Sbjct: 1194 DKIHARATGPYSAVTQQPVRGRARNGGQRLGEMEVWALQAYGAAYTLQELLTIKSDDIDG 1253 Query: 1301 RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 R + I N ++ G PESF VLL+E++SL N+++ Sbjct: 1254 RKEAVFRIYT-NRSLKFGQPESFKVLLRELQSLCFNLQIY 1292 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 80/215 (37%), Positives = 133/215 (61%), Gaps = 10/215 (4%) Query: 730 SRIVIKVNEDEMYPGEAGIDI-YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I++ +++ + + Y+L Y R+NQ+TCI Q P + G+ V+ D++ADG + Sbjct: 809 KNIILSLSQTKKQKSSIKKEYSYSLDNYQRTNQSTCITQRPNLKEGDWVQITDIIADGSA 868 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 + G+LALG+N+ +A++PW GYNFED+IL+S++++++D FT++HI ++T+ G E Sbjct: 869 SAGGKLALGKNVLIAYVPWEGYNFEDAILISDKLLEKDVFTSLHIDYYEVEVKNTQYGLE 928 Query: 849 EITADIPNVGEAA------LSKLDESGIVYIGAEVTGGDILVGKV---TPKGETQLTPEE 899 IT +P +A+ L +L+ +G++ IG+ V GD LVGK+ +PKG + E Sbjct: 929 TITNKVPLEIDASSKDILQLQRLNSNGLIEIGSWVEEGDYLVGKISPLSPKGPSIYKQYE 988 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 KL I+ K++SLRVP GV G V+DVQ+ Sbjct: 989 KLYNVIWQRDNPTFKNTSLRVPKGVEGFVLDVQIL 1023 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 37/256 (14%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 + + R+ + VL +P L+ IQ +SFQ F++ GL FRS+ +S+ Sbjct: 16 KDQFNRRFYYNDLYVL-IPDLIDIQRNSFQNFLQ------CGL---FRSLKKKKSFIFRK 65 Query: 67 ELQYVS-------YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 + + + +P D ++ G TY + + + + LV + K K Sbjct: 66 SIHKLEIVLFPEWIQFKKPELDSKKALHFGKTYGSYIYIPV-LVKFS------GWKKNKL 118 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 + + +G +PL+T G F+ING RV++ Q+ R+PG++ S KT + RI+P Sbjct: 119 EWILLGFLPLLTKQGHFIINGIPRVVLHQMIRNPGIYILSKDSKT-----RVATIRIVPE 173 Query: 180 RGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 +GSW++ D K +++ R+K+ I L+AL ++ +I + LQ Sbjct: 174 QGSWINITIDKKYRIWITTRFLRKKISVLIFLQALGFSLSEIYKNLGYSEL-------LQ 226 Query: 239 MELVPERLRGETASFD 254 + V E E D Sbjct: 227 VSFVKELQPDEKTRND 242 >UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=Pseudomonas mendocina RepID=Q5ZH39_PSEME Length = 382 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 172/227 (75%), Positives = 197/227 (86%) Query: 625 EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 +EG +++LV R E ++ + + V MDVS +QVVSV ASLIPFLEHDDANRALMG+N Sbjct: 155 QEGQLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSN 214 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 MQRQAVPTLRADKPLVGTGMER VA DSGV VA+RGGV+ VDASRIV++VN+DE+ G Sbjct: 215 MQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVNDDEVETG 274 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 EAG+DIYNLTKYTRSNQNTCINQ P VS G+ V RGD++ADGPSTD+GELALGQNMRVAF Sbjct: 275 EAGVDIYNLTKYTRSNQNTCINQRPLVSKGDQVSRGDIMADGPSTDMGELALGQNMRVAF 334 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 MPWNG+NFEDSI +SERVVQEDRFTTIHIQEL CV+RDTKLGPEEI+ Sbjct: 335 MPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEIS 381 >UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_CHLRE Length = 626 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 162/496 (32%), Positives = 254/496 (51%), Gaps = 73/496 (14%) Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V G V GD+L + G +L ++ A + + +D+ L ++ ++ Sbjct: 116 VKEGDWVEVGDLLADSASSIG-GELAIGHNIIVAYMPWEGYNYEDAIL-----INERLVY 169 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVEA 986 ++T +E+ + + ++ +Q +++ + E++ L+ ++I + + G + Sbjct: 170 EDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGIAKIGSWVEEGDILV 229 Query: 987 EKLDKL------PRDRWLELGLTDEEKQNQLEQLAEQYD--------ELKHEFEKKLEAK 1032 K+ P+ + L + + L + + ++ K Sbjct: 230 GKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVININILARQKIQINTK 289 Query: 1033 RRKITQGDDLAP---------GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + +G + +YLA KR++Q GDKMAGRHGNKG++S+I P + Sbjct: 290 SKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGRHGNKGIVSRILPRQ 349 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ +G VDIVLNPLGVPSRMN+GQI E LG+A + +G+ + Sbjct: 350 DMPFLPDGAAVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEM------- 402 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 GAD + LS ++ K+ +K LL D Sbjct: 403 -------YGADASRSFVLSKL----------------------YEARKKTGLKWLL---D 430 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G+IRL+DGR E F++ VTVG Y+LKL H+VDDKMHARSTG YSLVTQQPL G++ Sbjct: 431 PNHPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVDDKMHARSTGPYSLVTQQPLRGRS 490 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 + GGQR GEMEVWA+E YGAA+ L EMLT+KSDD+ GR ++KN+++ N ++ G PESF Sbjct: 491 KQGGQRLGEMEVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLWKNLIE-NKEISLGSPESF 549 Query: 1324 NVLLKEIRSLGINIEL 1339 VL+ E+++L ++I L Sbjct: 550 KVLICELQALCLDIGL 565 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 94/196 (47%), Positives = 135/196 (68%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ P V G+ VE GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 96 YNLETYHRSNQDTCLIHKPAVKEGDWVEVGDLLADSASSIGGELAIGHNIIVAYMPWEGY 155 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T+IHI+ +++TKLG E+IT +IP++ E + LD++GI Sbjct: 156 NYEDAILINERLVYEDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGI 215 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGK+TP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 216 AKIGSWVEEGDILVGKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVIN 275 Query: 931 VQVFTRDGVEKDKRAL 946 + + R ++ + ++ Sbjct: 276 INILARQKIQINTKSK 291 >UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=Archaea RepID=RPOB_SULAC Length = 1126 Score = 335 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 181/960 (18%), Positives = 343/960 (35%), Gaps = 145/960 (15%) Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE-TASFDIEANG 259 R P LR L Y++ L + + E ++ + +P L+ + ++ + Sbjct: 76 REITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPIDK 135 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE-----LICAAN 314 + + + + + + + + + E +A V DY + + +A Sbjct: 136 LIEIGEDPKDPGGY---FIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAA 192 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV---EIYRMMR 371 ++ +L S +I I L D + A+ +I + Sbjct: 193 GYRVQVMIERLKDSTI-QISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELL 251 Query: 372 PG-----EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EIEGSGILSKD 423 P + E A N + + + Sbjct: 252 PSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGY 311 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG- 482 + + K++++ G+ E DD DH N+R+R G++ + FRV + + +L Sbjct: 312 YLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSK 371 Query: 483 ------DLDTLMPQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRISALG 534 L L+ D+I + A + G + +SQ +D+ N LS ++H RR+ + Sbjct: 372 VRGRRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVVS-- 429 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 L R + FE RD+H T +GR+CP ETPEGPN GL+ +L++ AQ + G E+ +V Sbjct: 430 --SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVS-VGINESVVERV 486 Query: 595 TDGV----VTDEIHYLSAIEEG---------NYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 + V D I +S E Y+ + ++ + + R +G+ Sbjct: 487 AYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGK 546 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 S D+V+ ++T + V + DA R R+ + + PLV Sbjct: 547 LS----DEVNVAYIATDYLNEVHINC-------DAGRV-------RRPLIIVNNGTPLVD 588 Query: 702 TGMERAVAVDSGVTAVAK--RGGVVQYVDA---SRIVIKVNEDEMYPGEAGIDIYN---- 752 T E + +G + G ++++DA + +N ++ P ++I+ Sbjct: 589 T--EDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSAIL 646 Query: 753 -----LTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADGPS---------------- 788 + Y NQ NT + M SLG + D + Sbjct: 647 GIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRML 706 Query: 789 --TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 + G N +A M + GYN EDSI++++ ++ + + + + G Sbjct: 707 GVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGG 766 Query: 847 PEEITADIPN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG----ETQLT 896 E+ P G+ L+++G+V EV GGD+L+GKV+P +L+ Sbjct: 767 QED-KIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELS 825 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 PE+ +D+S+ +G +G V V + E ++ + Sbjct: 826 PEQ------------AKRDTSIVTRHGENGIVDLVLIT--------------ETLEGNKL 859 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAE 1016 K +L+I E G + GV +D++ + + D Sbjct: 860 VKVRVRDLRIPEIG--DKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRM 917 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDL--APGVLKIVKVYLAVKRRIQPGD-KMAGRHGNK 1073 ++ K A K P + ++ K L + + GR G K Sbjct: 918 TIGQIMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQK 977 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 159/395 (40%), Gaps = 82/395 (20%) Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 + ++LE + G V K+ P E E+ + + ++ E Sbjct: 784 KDYYRLLEDNGVVSPEVEVKGGDVLIGKVS--PPRFLQEFKELSPEQAKRDTSIVTRHGE 841 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 IT+ + K+VKV + R + GDK A RHG KGV+ + Sbjct: 842 NG-------IVDLVLITETLE----GNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILI 890 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 DMPY G DI+LNP +PSRM IGQI+E IG K A+ + + Sbjct: 891 DQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEA--------IGGKYAALSGKPVD--- 939 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 ATP + K E+++ + Sbjct: 940 ------------------------------------------ATPFLETPKLQEMQKEIL 957 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 +YDGRTG++ + + G +Y KL+H+V DKMHAR+ G ++T+QP Sbjct: 958 KLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTE 1017 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-------DVNGRTKMYK------- 1306 G+A+ GG RFGEME L +G A +++ L SD D G Y Sbjct: 1018 GRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRSKNRYV 1077 Query: 1307 NIVDGNHQM--EPGMPESFNVLLKEIRSLGINIEL 1339 V G+ + + +F +L++E+ S+ I+ L Sbjct: 1078 CPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRL 1112 Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 106/306 (34%), Gaps = 63/306 (20%) Query: 32 LDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP-----------VF 80 LDSF F+ L+ I + +++ R +P Sbjct: 25 LDSFNDFLRNK------LQQVIYEQGEIVTEVPGLKIKLGKIRYEKPSIRETDKGPMREI 78 Query: 81 DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT--------- 131 E ++R +TYS+P+ L ++ E + E+Y+G++P+M Sbjct: 79 TPMEARLRNLTYSSPIF--LSMIPVENNIEGEPI------EIYIGDLPIMLKSVADPTSN 130 Query: 132 ---------------DNGTFVINGTERVIVSQLHRSPG---VFFDSDKGKTHSSGKVLYN 173 G F++NG+E+VI++Q + V + KV + Sbjct: 131 LPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSS 190 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRR---KLPATIILRALNYTTEQILDLFFEKVIF 230 A G + + + ++I ++P II+RAL + T++ D+ + + Sbjct: 191 AA-----GYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDR--DIVYAVSLD 243 Query: 231 EIRDNKLQMELV-PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 N+L L + + D N +K + + ++K + + Sbjct: 244 PQIQNELLPSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQVIDKYFLPHLGTSP 303 Query: 290 EYIAGK 295 E K Sbjct: 304 EDRKKK 309 >UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeota RepID=A9A459_NITMS Length = 1115 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 175/791 (22%), Positives = 298/791 (37%), Gaps = 124/791 (15%) Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEA-NGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + I + ++ + E L D E G + + + R + +K + Sbjct: 150 GYFIINGSERVIVGLEDLSYNKIIVDRETVGGNIVHKAKVYSSIVGYRAKLELVMKNDGL 209 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 V I G V + L ++ E++ + L +E F D Sbjct: 210 IVARIPGSPVDIPVVTLMRA-LGLESDREIAAAV--SLVDELQDELEASFEKAGDVP--- 263 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 A+V I + + PG E + D L +G+ NR Sbjct: 264 ----------TAKDAIVYISKRIAPG-----MLEEFQIKRAETLLDWGLLPHLGKHPENR 308 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 + + KL++++ DD DH GN+ I+ G+M + FR Sbjct: 309 K-----------EKAQFLGEAACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLADLFRTA 357 Query: 468 LVRVERAVKERLSLGDLD-------TLMPQDMINAKPISAAVKEFFGSS--QLSQFMDQN 518 + R +K +L + +I K +A +G ++Q +D+ Sbjct: 358 FRNLVRDMKYQLERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRT 417 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 N LS I+H RRI + L+R + FE RD+H TH+GR+CP ETPEG N GL+ +L++ Sbjct: 418 NYLSTISHLRRIQS----PLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALS 473 Query: 579 AQTNEYGFLETPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNLDEEGH--FVEDLVT 635 + + P ++ + + +H+ A E+ L ++G FV+ + Sbjct: 474 GIIS----VNVPSEEIVEKLYDLGTVHFFDAKED-----------LKKDGTRIFVDGRLI 518 Query: 636 CRSK-GESSLFS-RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT- 692 K GE S RD + VS S I R + N R P Sbjct: 519 GYYKDGEQLAESLRDLRRNSKIHPHVGVSFHKSEI----EGSTRRLYVNCNAGRVLRPLI 574 Query: 693 -LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS---RIVIKVNEDEMYPGE--- 745 ++ +KPL+ + ++ R GV++ +DA+ + ++E + Sbjct: 575 IIKDNKPLLTADLLDKISKKLISWTDLLRMGVLEMIDANEEENCYVTLDEKDTKKHTHLE 634 Query: 746 --------AGIDIYNLTKYTRSNQNTCINQMPCVSLG---------EPV-ERGDVLADGP 787 AG I ++ +S +NT + M SLG V + + P Sbjct: 635 VFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVP 694 Query: 788 STDLGEL--------ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 + + GQN VA +P++GYN ED+I++S+ V T + Sbjct: 695 IVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAE 754 Query: 840 SRDTKLGPEEITADIPN--------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 ++ G + +IPN GE A L+E G+V A V GGDIL+GK +P Sbjct: 755 AKQYPGGMRD-AFEIPNAEDNIRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSPPR 813 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF-TRDGVEKDK---RALE 947 + E F +D+S+ V +G V V + + +G + K R + Sbjct: 814 FMEEYRE-------FESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRARDMR 866 Query: 948 IEEMQLKQAKK 958 I E+ K A + Sbjct: 867 IPEIGDKFASR 877 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 102/413 (24%), Positives = 163/413 (39%), Gaps = 82/413 (19%) Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + A EI + ++LE A + G + K Sbjct: 763 RDAFEIPNAEDNIRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSPP--------RF 814 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 +E ++ + + + + +TQ ++ K+ K+ R + Sbjct: 815 MEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGG----KMYKIRARDMRIPEI 870 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KGV+ + ED+PY +G D+++NP PSRM + GM + Sbjct: 871 GDKFASRHGQKGVLGILAKAEDLPYTASGMSPDVLINPHAFPSRMTV--------GMMME 922 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 I K A+ +G Sbjct: 923 SICGKSAAL----------------------------------------------RGKRF 936 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 F G K E++E++ SG+ +YDGRTG+ F V +G +Y KL+H+V DK Sbjct: 937 DGSAFVGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADK 996 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------ 1296 +HAR+ G ++T+QP G+A+ GG RFGEME L AYGA+ L++ L +SD Sbjct: 997 IHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFV 1056 Query: 1297 ----------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 DV R + + D + +F +LL+E++SL + L Sbjct: 1057 CERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 53/226 (23%) Query: 32 LDSFQKFIEQDPEGQYGLEAAFRSV--FPIQSYSGNSELQYVSYRLGEPV---------- 79 L+SF +F+E+ GL++ V I++ ++Q +L +P Sbjct: 26 LNSFDEFLER------GLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMMELDGSITH 79 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT-------- 131 E ++R V+YSAP+ ++ +V +G + + + V++G++P+M Sbjct: 80 ITPAEARLRNVSYSAPVMMEASVV------EDGKILESRF--VHIGDVPVMAKSNACILH 131 Query: 132 ----------------DNGTFVINGTERVIVSQLHRSPG-VFFDSDKGKTHSSGKVLYNA 174 G F+ING+ERVIV S + D + + K + Sbjct: 132 NFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVGGNIVHKAKVYS 191 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRK-LPATIILRALNYTTEQ 219 I+ YR + L+ + RI +P ++RAL +++ Sbjct: 192 SIVGYR-AKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDR 236 >UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax=Chlorella vulgaris RepID=RPOB_CHLVU Length = 1301 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 130/400 (32%), Positives = 205/400 (51%), Gaps = 23/400 (5%) Query: 358 DRLSALVEIYRMMRPGEP-------PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + A +Y + P + A F + +++D+ L +GR +F + Sbjct: 263 TQEEAWQYLYSHFKEYSPYAHKNLAAKEQTAREFFYSTLWNKDKLILGHIGRQQFREKIG 322 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E + L+++D+++ + L+ + + K VD+ID L +RIR E G+ Sbjct: 323 SIEPLENTSLTREDLLEATQALLSLMHKKRVVDEIDSLTQKRIRGCDEFLLEHLATGMKE 382 Query: 471 VERAVKERLSL-----------GDLDTLMPQD-MINAKPISAAVKEFFGSSQLSQFMDQN 518 E + +++ +L Q+ + +K +S + K FF S L QFMDQ Sbjct: 383 FELFFRRKVTFLPATKSITGAENPFRSLWRQNKAVFSKTVSKSWKRFFTSGTLGQFMDQT 442 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 N L+E THKRR++ LGPGG++ ++ ++R +HPT+YGR+CPIETPEG N GL+NS +V Sbjct: 443 NSLAETTHKRRLTVLGPGGISGKQTTIQIRGIHPTYYGRLCPIETPEGKNAGLVNSFTVL 502 Query: 579 AQTNEYG--FLETPYRKVTDGVVTDEIHYLSAIEEGNYVI--AQANSNLDEEGHFVEDLV 634 + ++YG L TP+ +V G V + L Y + A A+ L + + Sbjct: 503 SVLSKYGARTLTTPFYQVYKGQVQKTLPPLRVSPRQEYKLIEAPADIQLTAWNVLPKTHL 562 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 R + ++ V Q +SV SLIPFLEH+DANRALMG+NMQRQAVP L+ Sbjct: 563 PVRKELNFHSDVATRITTQSVGILQNISVATSLIPFLEHNDANRALMGSNMQRQAVPLLK 622 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 PLVGTG+E V D + A + G + V +++I + Sbjct: 623 PQAPLVGTGLESRVIGDVNHSMQASKTGFITKVSSTKIQV 662 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 160/493 (32%), Positives = 247/493 (50%), Gaps = 68/493 (13%) Query: 867 ESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 E I+ V GD+L G + +G+ L+ + +L A + + +D+ L +S Sbjct: 827 ERPILPENEWVEKGDLLADGASSSQGK--LSIGQNVLVAYLPWEGYNFEDAIL-----IS 879 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS----------RI 975 ++D ++FT ++ A++ + L++ + ++ ++ I Sbjct: 880 QRLVDQEIFTSLHMDHYDIAVQNTQYGLERITNLIPLKISDSTRDIYKMGNLDSRGLVEI 939 Query: 976 RAVLVAGGVEAEKLDKL---------PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 + + G K+ L P ++ + L E+ + L Sbjct: 940 GSWVEPGDYLVGKMSPLDPKSPPLQSPHEKLYNVILQREKTSFRNTSLRVPKGVQGFVLG 999 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 ++ + +L+ V+V L +R+IQ GDKMAGRHGNKG++S I P +DMP Sbjct: 1000 VQILPSQEPDVAALAEKDEILR-VRVLLLQRRKIQVGDKMAGRHGNKGIVSLILPRQDMP 1058 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 Y +GTPVDIVLNPLGVPSRMN+GQILE LG+A + ++ L +Q Sbjct: 1059 YLPDGTPVDIVLNPLGVPSRMNVGQILECLLGLAGHFLHERYTTYLFDEQ---------- 1108 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 GA+ + + S + + + Sbjct: 1109 ----YGAEASRSLVYSKLYQASLKTRNP-------------------------WVFEPHH 1139 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 G+IR++DGRTG F++P+T GY Y+LKL HLVDDK+HAR TG YS +TQQP+ G+A+ G Sbjct: 1140 PGKIRVFDGRTGLTFDQPITAGYAYILKLVHLVDDKIHARPTGPYSAITQQPVKGRARNG 1199 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVL 1326 GQR GEMEVWAL+AYGAA+TL E TVKSDD++GR + NI N + G PESF ++ Sbjct: 1200 GQRLGEMEVWALQAYGAAHTLHEFFTVKSDDLDGRQQAVLNIY-ANKPVTTGNPESFKLI 1258 Query: 1327 LKEIRSLGINIEL 1339 L+E+++L N ++ Sbjct: 1259 LRELQALCFNFQV 1271 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 128/210 (60%), Gaps = 10/210 (4%) Query: 735 KVNEDEMYPGEAGIDI-YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 K++ ++ + I Y+L +Y R+NQ+TC ++ P + E VE+GD+LADG S+ G+ Sbjct: 794 KLHSEDFRKNKVEITTTYSLIQYQRTNQSTCFSERPILPENEWVEKGDLLADGASSSQGK 853 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD 853 L++GQN+ VA++PW GYNFED+IL+S+R+V ++ FT++H+ ++T+ G E IT Sbjct: 854 LSIGQNVLVAYLPWEGYNFEDAILISQRLVDQEIFTSLHMDHYDIAVQNTQYGLERITNL 913 Query: 854 IPNVGEAALS------KLDESGIVYIGAEVTGGDILVGKVT---PKGETQLTPEEKLLRA 904 IP + LD G+V IG+ V GD LVGK++ PK +P EKL Sbjct: 914 IPLKISDSTRDIYKMGNLDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPLQSPHEKLYNV 973 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 I + + +++SLRVP GV G V+ VQ+ Sbjct: 974 ILQREKTSFRNTSLRVPKGVQGFVLGVQIL 1003 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 21/207 (10%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRL 75 +++P L+ +Q SF FIE YGL+ AF+ + + E+++ + Sbjct: 36 VQFSMEIPNLIDVQRQSFYSFIE------YGLKEAFQKPLRFSTTKHDLEIRFFPEGIQF 89 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 +P F ++ + G Y + + + + + + + +++G +P+MT G Sbjct: 90 RKPDFTQKQAVVLGKIYGSAVYIPVGI-------HSKKSSTFRIEWLFVGILPIMTRQGH 142 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 FV+NG RV++ Q+ R+PG++ H K + RI+P +G W+ D K ++ Sbjct: 143 FVVNGVSRVVLHQMVRNPGIY----TLPIHPRTK-IGTLRIVPEKGGWIHITVDKKHRVW 197 Query: 196 V-RIDRRRKLPATIILRALNYTTEQIL 221 RRK+ I L+A+ I Sbjct: 198 FLTRSLRRKVSLLIFLQAVGIPFHDIF 224 >UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunaliella salina RepID=D0FY17_DUNSA Length = 916 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 130/294 (44%), Positives = 185/294 (62%), Gaps = 6/294 (2%) Query: 447 HLGNRRIRSVGEMAE-NQFRVGLVRV---ERAVKERLSLGDLDTLMPQDMINAKPISAAV 502 +L RR + N+ R + ++ L L +IN K ++A+ Sbjct: 621 NLIKRRFTIARSAIQTNETRESTRKQPSRANFSSKKDISQQLKGLTSSSIINNKAFNSAI 680 Query: 503 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 +EFFG+S LSQFMDQ NPL+E+THKRR+S++GPGG+TR+ A +R +HPTHYGR+CPIE Sbjct: 681 REFFGTSPLSQFMDQINPLAELTHKRRLSSMGPGGVTRDTATLAIRGIHPTHYGRICPIE 740 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQAN 620 TPEG N GL+NS++ YA+ N G LE+P+ KV G V ++YL+A +E +A A+ Sbjct: 741 TPEGKNTGLVNSMTTYARVNSSGILESPFYKVYKGQVQKNTGMYYLNAEQEEKIKLAAAD 800 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 + G + ++ R + SR V Y+ VS Q++S+ ASLIPFLEHDDANRAL Sbjct: 801 LYVSPIGFLPKAMIPARIAETFTKISRSSVQYIGVSPLQMISIAASLIPFLEHDDANRAL 860 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 MG+NMQRQAVP +R ++P+VGTG+E DSG ++ G+V YV A +I++ Sbjct: 861 MGSNMQRQAVPLIRHERPIVGTGLEGRAVSDSGHVIQSRYSGLVTYVSAKKIIV 914 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 79/377 (20%), Positives = 146/377 (38%), Gaps = 43/377 (11%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFDVQ 83 +++Q SF + +E+ GL F PI + + + Y L P + Sbjct: 10 DFVTVQRQSFFELLEK------GLIEEFAKRNPITNGRKDYSFFFYPEYYILTRPEYKPH 63 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTER 143 E ++ +Y++ L V +++ + K I + VY+G IPLMT G F++NG R Sbjct: 64 EAILKNKSYTSKLFVPVQITNKKH-------KQIVLKWVYIGNIPLMTKRGHFILNGAAR 116 Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSGK-----------------------VLYNARIIPYR 180 VIV+Q+ RSPG+++ + + K + +I R Sbjct: 117 VIVNQILRSPGIYYQQKIYENYEDNKGSKSNAQDDETGEGSSLQPVNTYKRFYCDLICMR 176 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE--KVIFEIRDNKLQ 238 GSWL E D + N++ ++ + K+P L A+ + + IL + KV+ + NK Sbjct: 177 GSWLRIEMDKEKNIWAQMKKGPKIPIYWFLLAMGLSEKVILKSIMDPQKVLGNLERNKAV 236 Query: 239 MELVPERLR-GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 +L + + TA ++A+ + + + L D K+ Sbjct: 237 PKLSKKNKKDLTTARSAMQADETLKSTGEDKKNLEIKQDLIVADSLNESNSQTDKTTKLF 296 Query: 298 AKDYIDEST-GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD-P 355 + E T G L + + L++ + F+N +I E Sbjct: 297 WPEETREGTKGALTGFPHDLKNEGEENSLNKINEVNFVSEFSNKSVKNDFIEEDNEKAIK 356 Query: 356 TNDRLSALVEIYRMMRP 372 TN S+ + Y ++ Sbjct: 357 TNASTSSKKQNYPYLKN 373 >UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis RepID=A9VCU6_MONBE Length = 1136 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 118/503 (23%), Positives = 194/503 (38%), Gaps = 98/503 (19%) Query: 883 LVGKVTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFT 935 +V TP + +P ++ + G +K D+ L N ++ + + Sbjct: 681 IVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQAIKYRADNKLYSLNSGQTPLVRPRAYN 740 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR---IRAVLVAGGVEAEKLDK- 991 GV+ + D+ + + IL G R VL ++ + K Sbjct: 741 EYGVDNFPVGNNAIVCVIAYTGYDMEDAM-ILNKGSVERGFMHARVLATKVIDLTEKTKS 799 Query: 992 ---------LPRDRWLELGL--TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 LP+DR L + D + ++ ++ D L + R +I +G+ Sbjct: 800 RVCHYYFGVLPKDRSANLKMEKLDADGLPRVGAHIKEGDALYSYIDGSTNESRTEIYRGE 859 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 + + V + L++ R GDK A RHG KG++S++ P DMP+ E+G DI+ NP Sbjct: 860 --PAIIDRKVTIRLSINRNPIIGDKFASRHGQKGILSQLWPTADMPFSESGIIPDILFNP 917 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 G PSRM IG ++E+ G +A G D Sbjct: 918 HGFPSRMTIGMLIESMAGKSAALHG-------------------------------VAHD 946 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + F E R E L+ G R+Y G TGE+ Sbjct: 947 ATPFMFNENERA-------------------VDYFGEQLRTAGYNYHGHERMYSGITGEE 987 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 FE + +G ++ +L H+V DK R+ G + +T+QP+ G+ + GG RFGEME AL Sbjct: 988 FEVDIFIGNVFYQRLRHMVSDKFQVRTQGPVNSLTRQPVKGRKKNGGIRFGEMERDALLG 1047 Query: 1281 YGAAYTLQEMLTVKSD----DVNGRTKM-------------------YKNIVDGNHQMEP 1317 +G A+ LQ+ L SD DV + + DG + Sbjct: 1048 HGTAFLLQDRLFNCSDRSEVDVCRKCGSLLSPYSSEKTAANRIRVLRCRGCSDGGEVVRV 1107 Query: 1318 GMPESFNVLLKEIRSLGINIELE 1340 +P F L E+ ++ I + L+ Sbjct: 1108 NLPYVFRYLTAELSAMNIRLSLD 1130 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 104/612 (16%), Positives = 210/612 (34%), Gaps = 106/612 (17%) Query: 339 NDLDHGPYISETLRVDPTND----RLSALVEIYRMMRPGEPPTREAAESLFENLF----- 389 + + + +R D +N R+ ++ Y R +++A + NLF Sbjct: 268 SGVSDRQIFMDIVRGDMSNSFLVERVEIMLRQYTRER---LFSQQACLAYLGNLFKVILN 324 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 + D+ A + F R LL ++ +++++ + G + D+ D Sbjct: 325 LHPETSDVEAA-HILFKRVLLVHIAPNDFQAKYRVLVGLIRRVYSLAAGSTQPDNADSQM 383 Query: 450 NRRIRSVGE----MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP------IS 499 + + G + Q LV +++ V+ L +G + + + I Sbjct: 384 LQELLLPGHIYCAFVKEQMSEYLVAMQKLVQTDLRMGKTVDVSNTNYLQTDVMRRCPDIG 443 Query: 500 AAVKEFFGSSQLSQ--------------FMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + ++ F + L+ D+ N L ++H R + G + Sbjct: 444 SKLEYFMSTGNLNSPTALDQMQVTGFTIVADKLNFLRYLSHFR---CVHRGAYFSQMKTT 500 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV----VTD 601 VR + P +G +CP+ TP+G GL+N L+ + + G+ V++ Sbjct: 501 AVRKLLPEAWGFLCPVHTPDGAPCGLLNHLARHCLPPTEPVDISSLPPTLLGLGMIAVSE 560 Query: 602 EIHY--LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 + H+ L + +G+ V L++ F E L + + + + + ++ V+ + Sbjct: 561 QPHFHCLDVLLDGHLV---GFLALEQAPKFAEQLRILKIRDDERV--PNTLEIAYVAPR- 614 Query: 660 VVSVGASLIP--FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 A P +L A LR + L E + + V Sbjct: 615 ----AAGQFPGLYLFSTPAR--------------LLRPVRNLRMKSTEFVGSFEQVYLNV 656 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY----NLTKYTRSNQNTCINQMPCVSL 773 A VD V + I + + +S +N QM ++ Sbjct: 657 A--------VDPKEFVSGETTHMELTKHGFLSIVASFTPFSDFNQSPRNMYQCQMGKQTM 708 Query: 774 GEPVERGDVLADG--PSTDLGELAL----------------GQNMRVAFMPWNGYNFEDS 815 G P + AD S + G+ L G N V + + GY+ ED+ Sbjct: 709 GVPGQAIKYRADNKLYSLNSGQTPLVRPRAYNEYGVDNFPVGNNAIVCVIAYTGYDMEDA 768 Query: 816 ILVSERVVQEDRFTT--IHIQELACVSRDTKLGPEEITADIPNVGEAALS--KLDESGIV 871 +++++ V+ + + + + +P A L KLD G+ Sbjct: 769 MILNKGSVERGFMHARVLATKVIDLTEKTKSRVCHYYFGVLPKDRSANLKMEKLDADGLP 828 Query: 872 YIGAEVTGGDIL 883 +GA + GD L Sbjct: 829 RVGAHIKEGDAL 840 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 61/237 (25%) Query: 33 DSFQKFIEQDPEGQYGLEAAFRSVFPIQ--SYSGNSELQYVSYRLGEPVFD--------- 81 DSF ++GLE A + P+ + + L RL +P Sbjct: 53 DSFN------YMVKHGLEQAVADLDPLTFVAQNKTISLSIAKCRLEQPTVSRKEGFSTAN 106 Query: 82 ---VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN----- 133 EC+ R VTY + + + + + + Y+G++P+M + Sbjct: 107 ALYPAECRQRRVTYKGDFYLTVNIEVEGQPNAWQVER-------YVGQLPIMIMSNACRL 159 Query: 134 -------------------GTFVINGTERVIVSQLH--RSPGVFFDSDKGKTHSSGKVLY 172 G F+ING E+++ L R+ + D G Y Sbjct: 160 NGLSPRELVMKKEEAQEMGGYFIINGNEKIVRMLLMPRRNHPICLDRPSYVNRGPGYSSY 219 Query: 173 NAR---IIPYRGSW---LDFEFDPKDNL-FVRIDRRRKLPATIILRAL-NYTTEQIL 221 + + P + + + ++ D L F ++ +PA ++LRAL + QI Sbjct: 220 GVQMRCVRPDQSAQTVVVHYKNDGTCTLGFSYRKQQYLIPAILLLRALSGVSDRQIF 276 >UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota RepID=C1E1U0_9CHLO Length = 1178 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 94/429 (21%), Positives = 169/429 (39%), Gaps = 90/429 (20%) Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV-----LVAGGVEAE 987 +F R +++K+ + + +L++ +D + ++ + + + Sbjct: 816 IFYRSFKDEEKKQGSLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIG 875 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 K LP D + ++ ++ + + + +T D L Sbjct: 876 KTSPLPEDDPSAVS----------KRFTKRDCSTGMKNSETGIIDQVLLTTNDQ----GL 921 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 + VK+ + R Q GDK + RHG KG I EDMP+ G DI++NP +PSRM Sbjct: 922 RFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRM 981 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 IGQ++E +G K+ AM+ ++ + Sbjct: 982 TIGQLVECLMG--------KVAAMMGKEGDATP--------------------------- 1006 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 F I ++L + G +Y+G TG + E + + Sbjct: 1007 -------------------FTPVTVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIFL 1047 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y +L H+VDDK+H+R G ++T+QP+ G+++ GG RFGEME + ++GAA L Sbjct: 1048 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFL 1107 Query: 1288 QEMLTVKSDDVNGRTKM-----------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 +E L +SD KN + ++ MP + +L +E+ Sbjct: 1108 KERLMDQSDAYRIHVCETCGLIAVANLKNQTFECCKNPSERTKVVQVMMPYACKLLFQEL 1167 Query: 1331 RSLGINIEL 1339 S+ + L Sbjct: 1168 MSMAVAPRL 1176 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 119/600 (19%), Positives = 226/600 (37%), Gaps = 74/600 (12%) Query: 397 LSAVGRMKFNRSLLREEI-------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 ++ R+++ R +L++E+ EG + ++ +L+ G+ + DD DH G Sbjct: 334 VTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFLGYIVNRLLLCALGRKKEDDRDHFG 393 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 N+R+ G + FR +V + V+ + + + + AK I++ +K Sbjct: 394 NKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRCIDSGKDIQLTLAVKAKTITSGLKYSLA 453 Query: 508 SSQL------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 + SQ +++ + S ++H RR+++ + RE + R +H +H+ Sbjct: 454 TGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNS----PIGREGKLAKPRQLHNSHW 509 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G VCP ETPEG +GL+ +LS+ + G P + + + + +S N Sbjct: 510 GMVCPAETPEGQAVGLVKNLSLMCLVS-VGSPSAPLLEFLEEWSMENLEEISPSVIVNAT 568 Query: 616 IAQANSN----LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 N E V+ L R K + + V + + ++ + I L Sbjct: 569 KIFVNGVWVGVHREPAQLVQTLRNLRRKLDIT-IEVGVVHDIALRELRLYTDYGRCIRPL 627 Query: 672 EHDDANRALMGAN---MQRQAVPTLRADKPLVGTGMERAVAVDS-----GVTAVAKRGGV 723 + N ++ M + T LV TG V + + + G Sbjct: 628 FIVEDNHLVIKKKDIQMLYEKEITGYTWNDLVATGCIEYVDTEEEETTMIAMTIDELVGQ 687 Query: 724 VQYVDASRIVIKVNEDEMYPG---EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 + + E++P I + +S +NT + M ++G V Sbjct: 688 RINAEPGGVKHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNF 747 Query: 781 DVLADGPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 + D + EL G N+ V M + GYN EDS+++++ Sbjct: 748 QIRMDTLAYVLFYPQKPLVTTRAMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSS 807 Query: 823 VQEDRFTTIHIQELACVSRD----TKLGPEEITADIP-NVGEAALSKLDESGIVYIGAEV 877 + F +I + + TK E + D + KLD+ G++ G V Sbjct: 808 IDRGLFRSIFYRSFKDEEKKQGSLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRV 867 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 +G DI++GK +P E + K +D S + N +G + V + T D Sbjct: 868 SGEDIIIGKTSPLPEDDPSAVS---------KRFTKRDCSTGMKNSETGIIDQVLLTTND 918 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 99/272 (36%), Gaps = 67/272 (24%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQ------DPEGQYGLEAAFRSVFPIQSYSGN----SE 67 + L QLDSF +FI+ D + +E P + G + Sbjct: 23 ISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEPE-EQHMPGEEADGKGKKKYK 81 Query: 68 LQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVK-LRLVIYEREAPEGTVKD 116 +++ L +P+ +E ++R +TYSAPL + + I + + T Sbjct: 82 VEFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTDEIDATTGK 141 Query: 117 IKE-------QEVYMGEIPLM-----------TDN-------------GTFVINGTERVI 145 E +V+ G++P+M TD G F+ING+E+V+ Sbjct: 142 YIETIDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVL 201 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF-----------DPKDNL 194 ++Q S + +K + S + R P G+ D + Sbjct: 202 IAQEKMSTNHVYVFEK-RQPSKYMWVAECRSSPESGARAASSCMARLCHAPGTKDEAGVI 260 Query: 195 FVRID-RRRKLPATIILRALNY-TTEQILDLF 224 V I R ++P ++ RAL + + IL+ Sbjct: 261 SVTIPYIRTEIPLFVVFRALGFVADKDILEHL 292 >UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F81 Length = 309 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 137/308 (44%), Positives = 204/308 (66%), Gaps = 9/308 (2%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQK---FIEQDPEGQYGLEAAFRSVF 57 M S+TEKK IRK FGK + L +P L+ +Q +S+++ F + E G + F+S+F Sbjct: 1 MQLSFTEKKNIRKSFGKLKESLSIPNLIEVQKNSYKELTEFNTEVTELTKGFDRVFKSIF 60 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT--VK 115 PI+ + + L+YVSYRL +P FDV+EC RG+TYS+ L+ LRLV+YE + T + Sbjct: 61 PIEDLNDKATLEYVSYRLEKPKFDVEECIARGLTYSSALKCTLRLVVYEIDQENNTKDIL 120 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 KEQEVYMGE+P+MT++GTF+ NG +RV+V+Q+HRSPGVFFD DKGKTH+SGK+L+N R Sbjct: 121 SAKEQEVYMGEVPMMTNSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKTHASGKLLFNCR 180 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV--IFEIR 233 +IP RGSWLDFE+D KD L+ +IDR++K+ ++ +L AL YT +I+D F+E F+ + Sbjct: 181 VIPNRGSWLDFEYDVKDFLYFKIDRKKKIFSSTLLLALGYTKSEIVDEFYESEQYNFDPK 240 Query: 234 DNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 K + + PE + + S ++ G+V ++ G +I ++L D +K I V E Sbjct: 241 TEKWKTKFNPENYKAKNFSEEVIDAKTGEVVIKLGDKINFLSAKKLANDGLKDILVSRES 300 Query: 292 IAGKVVAK 299 + GK + Sbjct: 301 LFGKFCTE 308 >UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY16_DUNSA Length = 924 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 147/397 (37%), Positives = 208/397 (52%), Gaps = 44/397 (11%) Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 +I L+ ++ ++ + + V + Sbjct: 526 QNKISSENLRSGTREGTKNFSLGQNNKIVLSGKFSGQSRVI--NFSNFSQLSSYTKKFRK 583 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + + Q + KKL+ K K + ++ + +YLA KR+IQ GD Sbjct: 584 NPRVLRTLQTLVDGQLKNLKIMKKLKNKAEKGGFVSTKSIKDIETIHIYLAEKRKIQVGD 643 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KM+GRHGNKG++S+I P++DMP+ +GTP+D+VLNPLGVPSRMN+GQI E LG+A K + Sbjct: 644 KMSGRHGNKGIVSQILPMQDMPFLPDGTPIDMVLNPLGVPSRMNVGQIYECLLGLAGKYL 703 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G+ + G + + Sbjct: 704 GEHYKISSFDEI--------------YGPEASRSF------------------------- 724 Query: 1185 PVFDGAKEAEIKELLK-LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 VF EA K K L + G+IRLYDGRTG+ + +PVTVG YML+L H+VDDK+ Sbjct: 725 -VFSKLYEARCKTGFKWLFNPQYPGKIRLYDGRTGDCYHQPVTVGQSYMLRLVHMVDDKI 783 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 H RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLTVKSDD+ GR Sbjct: 784 HMRSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWALEGYGAAFTLLEMLTVKSDDLTGRMT 843 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ N++ N + G PE+F VL+ E+++L ++I L Sbjct: 844 LWSNLIL-NKDLTIGTPEAFKVLICELQALCLDIGLY 879 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 88/293 (30%), Positives = 125/293 (42%), Gaps = 69/293 (23%) Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y L + RSNQ+TC+ P V G+ V+ GD L D ++ GEL+LGQN+ +A+MPW G Sbjct: 94 EYKLETFHRSNQDTCLTHKPAVFEGDWVQSGDFLTDCANSVGGELSLGQNIFIAYMPWEG 153 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACV-------SRDTKLGPEEITADIP------- 855 YNFED+IL+SER+V +D FT++HI+ S+ +L +EI + Sbjct: 154 YNFEDAILISERLVSDDLFTSVHIERYEIENIQKDGISQQERLTNKEINEKMKSKEKQTV 213 Query: 856 ---------NVGEAALSKL-----------DESGIVYIGAE------------------- 876 N A L +S I I Sbjct: 214 ARSAIRADENREYARKQNLKNSQTRQTSQKTKSNISQIRTTRYEEITRDIPDVTPEEICH 273 Query: 877 ------VTGGDI------LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 V G I LVGK+TP + TP +KLL I ++ +DSSLR P G+ Sbjct: 274 LDSFGIVKIGSIVEEGDILVGKITPINKKDFTPYQKLLYTILDKQIRPYRDSSLRAPKGI 333 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 VID+++F + G K K D + LE R++A Sbjct: 334 KAKVIDIKIFVKPGSVVRSPF----AYSSKFLKTDPPKRSSKLEKSKKVRVKA 382 >UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplantae RepID=Q01GR3_OSTTA Length = 999 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 118/560 (21%), Positives = 209/560 (37%), Gaps = 104/560 (18%) Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA--EVTGGDI 882 + T+ I+ + +T + I+ I ++ A S ++G+ E+ I Sbjct: 496 NELVTSGFIEYVDTEEEETTM----ISMTIDDLAAARQSADRKTGVAIRYTHCEIHPSMI 551 Query: 883 L--VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI----DVQVFTR 936 L + P + +P ++ G++A + ++ ++ G V+ V TR Sbjct: 552 LGICASIIPFPDHNQSPRNT-YQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLVTTR 610 Query: 937 DGVEKDKRALE---------IEEMQLKQAKKDLSEELQI---LEAGLFSR--IRAVLVAG 982 R L + Q L + I L L+ R G Sbjct: 611 AMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQG 670 Query: 983 GVEAEKLDKLPRDRWLEL------GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + E+ ++ RD L + L D+ L++++ + K Sbjct: 671 SLSREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLSKRFSKKDCSTGMKHAETGIID 730 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 L+ VK+ + R Q GDK + RHG KG + EDMP+ G DI Sbjct: 731 QVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDI 790 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP +PSRM IGQ++E +G K+ A + ++ + Sbjct: 791 IVNPHAIPSRMTIGQLVECIMG--------KVAACMGKEGDATP---------------- 826 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 F +I +L G +Y+G Sbjct: 827 ------------------------------FTPVTAEDISTMLHKCGYQKRGNEVMYNGH 856 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TG + + +G Y +L H+VDDK+H+R G ++T+QP+ G+++ GG RFGEME Sbjct: 857 TGRMLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERD 916 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKM-------------YKNIVDGNHQMEPGM 1319 + ++GAA L+E L +SD V + + KN + ++ + Sbjct: 917 CIMSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFECCKNPSERTSVVQVMV 976 Query: 1320 PESFNVLLKEIRSLGINIEL 1339 P + +L +E+ S+ I L Sbjct: 977 PYACKLLFQELMSMAIAPRL 996 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 116/643 (18%), Positives = 225/643 (34%), Gaps = 133/643 (20%) Query: 397 LSAVGRMKFNRSLLREEI-------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 +S R+K+ + +L++E+ E + ++ +L+ G+ DD DH G Sbjct: 173 VSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYG 232 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 N+R+ G + FR ++ + V+ + + + Q I AK I+ +K Sbjct: 233 NKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLA 292 Query: 508 SSQL------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 + SQ +++ + S ++H RRI++ + RE + R +H + + Sbjct: 293 TGNWGSQGAQDIRAGVSQVLNRLSYSSTLSHLRRINS----PIGREGKLAKPRQLHNSLW 348 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G +CP ETPEG +GL+ +L++ A + G P + D + + +S Sbjct: 349 GMICPAETPEGQAVGLVKNLALMALVS-VGSPSEPILEFLDEWTMENLEEISPSLIAEST 407 Query: 616 IAQANSN----LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI-PF 670 N + V L R + + S V + + ++ + P Sbjct: 408 KIFLNGVWVGVHRDPADLVRTLRKLRRQCDVDS-SVSVVHDIRLKELRLYTDYGRCTRPL 466 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 DD + + ++Q + L +K + TG G ++YVD Sbjct: 467 FIVDDDQKLRI----KKQHIELL-TEKDV--TGYS---------WNELVTSGFIEYVDTE 510 Query: 731 R-------------------------IVIKVNEDEMYPG---EAGIDIYNLTKYTRSNQN 762 + I+ E++P I + +S +N Sbjct: 511 EEETTMISMTIDDLAAARQSADRKTGVAIRYTHCEIHPSMILGICASIIPFPDHNQSPRN 570 Query: 763 TCINQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAF 804 T + M ++G V + D EL G N VA Sbjct: 571 TYQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLVTTRAMEYLHFRELPAGCNAVVAI 630 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD-TKLGPEEITA----DIPNVGE 859 M + GYN EDS+L+++ + F +++ + + L EE + Sbjct: 631 MCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRH 690 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 KLD+ G++Y + +L F + KD S Sbjct: 691 GTYDKLDDDGLIY-------------------------DSAVLSKRFSK-----KDCSTG 720 Query: 920 VPNGVSGTVIDVQVFTRD----GVEKDKRALEIEEMQLKQAKK 958 + + +G + V + T D V+ R++ ++ K + + Sbjct: 721 MKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSR 763 >UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SSM5_METLZ Length = 637 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 113/396 (28%), Positives = 170/396 (42%), Gaps = 63/396 (15%) Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 I+ + VL+ L+ + EL ++ + + + + + Sbjct: 283 IINPETVVNEKDVLIGKTSPPRFLE----EPTGELIAVEKRRDTSITMRSNETGIVDTVI 338 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + E R +VKV R + GDK A RHG KGV I P E+M Sbjct: 339 ITESENSSR--------------LVKVRTRDLRIPEIGDKFASRHGQKGVCGLITPQENM 384 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE-- 1143 P+ G D+V+NP VPSRM IG +LE G A G ++NA ++ +V K+ + Sbjct: 385 PFTAAGIAPDLVINPHAVPSRMTIGHMLEMIGGKAGALEGSRVNATSFRKTQVEKIFDSS 444 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 F Q ++ + V ST + E+V+R L Sbjct: 445 FAQNRLLNDKEIGKDVKSSTLTREQVLRH-------------------------QLAEAG 479 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 +G+ +YDG TG +F+ + +G +Y KL H+V KMHARS G ++T+QP G+A Sbjct: 480 FAHTGREVMYDGITGRRFQADIYIGVIYYQKLYHMVSTKMHARSRGPVQVLTRQPTEGRA 539 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTKM------------YKN 1307 + GG RFGEME + +GAA L+E L +SD V R M Sbjct: 540 REGGLRFGEMERDVMIGHGAAMALKERLLDESDAVKQYVCARCGMVAMYDAKQKMTRCLA 599 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGI--NIELED 1341 E M +F +LL E++S+GI + LED Sbjct: 600 CGAETDIYEVEMSYAFKLLLDEMKSMGIAPRLRLED 635 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 68/328 (20%), Positives = 122/328 (37%), Gaps = 53/328 (16%) Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA--KRGGVVQYVDASR-- 731 +N ++ + R P + + + E V SG G ++++DA Sbjct: 49 SNEIVINTDRGRARRPLIVVENGVPAVTPEDIEIVRSGAEDFMALVSQGKIEFIDAEEED 108 Query: 732 -IVIKVNEDEMYPGEAGIDI------------YNLTKYTRSNQNTCINQMPCVSLG---- 774 + I V E ++ P ++I ++ S + T M +LG Sbjct: 109 DLFIAVQESDLTPEHTHLEIDPSLILGIGAAHVPFPEHNASPRVTMGAGMIKQALGFAQA 168 Query: 775 ----EPVERGDVL--ADGPS--TDLGEL------ALGQNMRVAFMPWNGYNFEDSILVSE 820 P RG +L A P T EL GQN VA + + GYN ED+++ ++ Sbjct: 169 NMKLRPDTRGHMLHYAQVPMVHTQAAELIGSDNRPQGQNFCVAIISYEGYNIEDALIFNK 228 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV------GEAALSKLDESGIVYIG 874 V+ + + R G + ++P G + + LD GI+ Sbjct: 229 ASVERGVGRSHFFRTYEGEERRYPGGQVD-RIELPEEDVQGSHGIGSYANLDVDGIINPE 287 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 V D+L+GK +P + P +L+ +D+S+ + + +G V V + Sbjct: 288 TVVNEKDVLIGKTSPPRFLE-EPTGELIA------VEKRRDTSITMRSNETGIVDTVIIT 340 Query: 935 ----TRDGVEKDKRALEIEEMQLKQAKK 958 + V+ R L I E+ K A + Sbjct: 341 ESENSSRLVKVRTRDLRIPEIGDKFASR 368 >UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota RepID=Q5KIB7_CRYNE Length = 1193 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 95/427 (22%), Positives = 167/427 (39%), Gaps = 76/427 (17%) Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR-AVLVAGGVEAEKLDK 991 ++ R + +K ++ +++ ++ + ++ ++++ LVA G D Sbjct: 824 LYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDI 883 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 L ++E Q E+ + + T G+ VK Sbjct: 884 LIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGE-----GNMFVK 938 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 + + R Q GDK A RHG KG I EDMP+ G DI++NP +PSRM IG Sbjct: 939 IRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGH 998 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 ++ E ++ Sbjct: 999 LV-----------------------------------------------------ECLLS 1005 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 L ATP F + ++L+ + G LY G TG + + V G Y Sbjct: 1006 KVSTLTGAEGDATP-FTELTVEAVSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFGPTY 1064 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME + ++G A L+E + Sbjct: 1065 YQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERM 1124 Query: 1292 TVKSD-------DVNG--------RTKMYKNIVDGN-HQMEPGMPESFNVLLKEIRSLGI 1335 SD DV G + + Y ++ + + +P + +L +E++++ I Sbjct: 1125 YDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQAMNI 1184 Query: 1336 NIELEDE 1342 + E Sbjct: 1185 ACRMYGE 1191 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 107/581 (18%), Positives = 196/581 (33%), Gaps = 120/581 (20%) Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKER------LSLGDLDTLMPQDMINAKPISAAVKE 504 +R R+ ++ +F + E ++ + + I I+ +K Sbjct: 375 QRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMCVEQNKEFALNMAIRPNTITDGLKY 434 Query: 505 FFGSSQL----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR + + R+ + R +H TH Sbjct: 435 ALATGNWGKRDNTRAGVSQVLNRYTFASTLSHLRRTNT----PIGRDSKAAKPRQLHNTH 490 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI-HYLSA-IEEG 612 +G VCP ETPEG GL+ +L++ + + G P + + +++ Y A Sbjct: 491 WGMVCPAETPEGSACGLVKNLALMSYIS-VGSYSAPVMEFLEEWGLEDLSEYQDAPTATK 549 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 +V + +L+ R G+ D + L + + Sbjct: 550 VFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRE----------RELRLYTD 599 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR- 731 R L + Q + R + + + SG G+V+YVDA+ Sbjct: 600 AGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLL--SGAWDKLLSEGIVEYVDAAEE 657 Query: 732 --IVIKVNEDEMYPGEAGIDIYNL------------------------------------ 753 I+I + +++ + L Sbjct: 658 ETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSM 717 Query: 754 -----------TKYTRSNQNTCINQMPCVSLGEPVERGDV---------------LADGP 787 + +S +NT + M ++G + + LA Sbjct: 718 ILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTR 777 Query: 788 STDL---GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 S + EL GQN VA M ++GYN EDS+++++ + F +++ + + Sbjct: 778 SMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKG 837 Query: 845 LGPEEITADIPNVGE---------AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 + E T + P+ E +KLD G+V G V G DIL+GK P E Sbjct: 838 MVKAE-TIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPE--- 893 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 EE R K +D S + + G V V + T Sbjct: 894 DSEELGQRTQLHTK----RDISTPLKSTEQGVVDQVMLSTN 930 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 66/191 (34%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ------------SYSGN 65 + L+ QL+SF +FIE ++ + + Sbjct: 58 INSFFEEKGLVRQQLESFNEFIENT------MQEIVDDHSRLTLDQFTQYTGVAGDETRR 111 Query: 66 SELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLR---LVIYEREAP-- 110 E+ + L QE ++R +TYSAPL V ++ L + P Sbjct: 112 YEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVE 171 Query: 111 ---------EGTVKDIKEQEVYMGEIPLMT------------DNGT------------FV 137 +G V+ +E++ +G++P+M D F+ Sbjct: 172 ADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFI 231 Query: 138 INGTERVIVSQ 148 I+G+E+V+++Q Sbjct: 232 ISGSEKVLIAQ 242 >UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SHS2_RICCO Length = 1139 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 125/308 (40%), Gaps = 65/308 (21%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 +KV + RR + GDK + RHG KGV I ED P+ E G D+++NP G PSRM Sbjct: 877 CIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMT 936 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 +G+++E G A G Sbjct: 937 VGKMIELLGGKAGVSCG------------------------------------------- 953 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 G P I E L +G+ +Y G TG + + +G Sbjct: 954 ------RFHYGSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFMG 1007 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 +Y KL H+V DKMHAR G ++T+QP G+A+ GG R GEME L AYGA+ + Sbjct: 1008 PIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1067 Query: 1289 EMLTVKSDDVNG----------------RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 E L + SD R + +G++ +P + +L++E++S Sbjct: 1068 ERLMISSDPFEVQVCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQELQS 1127 Query: 1333 LGINIELE 1340 + I L+ Sbjct: 1128 MNIVPRLK 1135 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 105/573 (18%), Positives = 205/573 (35%), Gaps = 92/573 (16%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV----ERAVKERLS 480 + +++++++ K +DD D++GN+R+ G++ F + +R + L+ Sbjct: 334 VAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVLT 393 Query: 481 LGDLDT-LMPQDMINAKPISAAVKEFFGSSQ--LSQF-MDQNNPLSEITHKRRISALGPG 536 + + I I+ ++ + + +F M + + I++LG Sbjct: 394 KQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLG-- 451 Query: 537 GLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +TR FE R + P+ +G +CP +TPEG GL+ +L++ E Sbjct: 452 MMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDE-EG 510 Query: 590 PYRKVTDGVVTDEIHYLSAIEE---GNYVIAQANSNLDEE---GHFVEDLVTCRSKGESS 643 P + + +++ LS E ++++ L + +FV + R G+ Sbjct: 511 PLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQYFVNSMRKLRRAGKIG 570 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM-GANMQRQAVPTLRADKPLVGT 702 F VSV ++ RA+ ++ R P + AD+ + Sbjct: 571 EF---------------VSV--------FVNEKQRAVYLASDGGRVCRPLVIADRGVSRI 607 Query: 703 GMERAVAVDSGVTAVAK--RGGVVQYVD---ASRIVIKVNEDEMYPGEAGIDIYN----- 752 + GV R G+++Y+D + ++ + E E P I+I Sbjct: 608 KEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTILG 667 Query: 753 ----LTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADGP------------------ 787 L + NQ NT M ++G D Sbjct: 668 VCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIE 727 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 +L GQN VA M ++GY+ ED+I++++ + I +++ + + + G Sbjct: 728 LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGA 787 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 + P+ LD G+ G + DI V K P L I Sbjct: 788 SDRILR-PDRTVERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENI-- 844 Query: 908 EKASDVKDS--SLRVPNGVSGTVIDVQVFTRDG 938 + S S + P G S + V + + Sbjct: 845 ----KYRPSPLSYKGPEGESPVIDRVALSSDRN 873 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 61/246 (24%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY-SGNSELQYVSY 73 F P+ L V L+ LDSF F+ G++ R+ I S L++ Sbjct: 38 FQLLPEFLKVRGLVKQHLDSFNYFV------NIGIKKIVRANDRIVSTVDPGIYLRFKDV 91 Query: 74 RLGEPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 R+G P C++ TY+AP+ V + + + K+ +V + Sbjct: 92 RIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEKN----DVVI 147 Query: 125 GEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPG-VFFDS 159 G +P+M G FVI GTE+VI+ Q S + D+ Sbjct: 148 GRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 207 Query: 160 DKG-----KTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRAL 213 DK SS + + II K+ +++ +++ +K+P ++++A+ Sbjct: 208 DKKGNINASVTSSTEATKSKTIIQM----------EKEKMYLCLNQFVKKIPIMVVIKAM 257 Query: 214 NYTTEQ 219 ++Q Sbjct: 258 GMESDQ 263 >UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4MYU5_THEPA Length = 1244 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 48/304 (15%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 K+ K+ + R + GDK + RHG KGV+ I EDMP+ E+G D+++NP G P Sbjct: 975 NGNKMYKIMVRQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFP 1034 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM +G++LE ++ G+ VD + F Sbjct: 1035 SRMTVGKLLELVASKSSVFSGN-------------------------------FVDSTPF 1063 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 S+ L +L K ++I ++L G+ LY G +G Sbjct: 1064 SNSYSDNLCNDLNNS--------GSNKMSDICDILIKNGFHPKGKEILYSGISGNPINTL 1115 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + +G +Y +L H+V DK+HAR G +T+QP G+++ GG R GEME L AYG++ Sbjct: 1116 IFIGPIYYQRLKHMVTDKIHARGRGPRQPITRQPTEGRSRDGGLRLGEMERDCLIAYGSS 1175 Query: 1285 YTLQEMLTVKSD----DVNGRTKM-----YKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 L E L + SD +V + N + +P + +L +E++++ I Sbjct: 1176 NLLVERLMLSSDVFNIEVCSSCGFMGYNNFCKFCQNNSLAQVSLPYACKLLFQELQAMNI 1235 Query: 1336 NIEL 1339 L Sbjct: 1236 RPSL 1239 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 157/960 (16%), Positives = 341/960 (35%), Gaps = 182/960 (18%) Query: 32 LDSFQKFI--EQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP----------V 79 ++S+ F+ E R + L++V ++G+P Sbjct: 52 INSYNNFVLHEIKDIINAPSNKVLR-----TDLYPSLSLEFVDIKIGKPFFTDHSKHVFK 106 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG-TFVI 138 Q C+IR TYSAP+ V + +++ + +G IP+M + F+ Sbjct: 107 LTPQLCRIRDFTYSAPILVTI--------DYFRDYTFTRKENLEIGRIPVMLRSCICFLS 158 Query: 139 NGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRI 198 + +E + H S G+ + + S K ++ IP Sbjct: 159 SDSE---SNSDHDSSGL---PEYNSSKKSMKNNFD---IPD------------------- 190 Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 + E + F++ + + + + + + + Sbjct: 191 ---------------GLSKED-RESFYKSYMLDECPYDPGGYFIIKGVEKVILMQEQLSK 234 Query: 259 GKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 ++ VE + A + + V + D ++ A +E Sbjct: 235 SRIIVEMDVKKNICATVTSATAESKSRTAVVYKNSQLYLRINSFTDDVPLCIVLKAMGIE 294 Query: 317 LSLDLLAKLSQS-----GHKRIETLFTNDLDHGPYIS--ETLRVDPTNDRLSALVEIYRM 369 +++ +S S + T +N + YI+ L + N RL AL+ I + Sbjct: 295 TDHEIIQLISNSPTTFKNSNNLTTPSSNLPNGLDYITFLNDLYNEDINSRLDALMYIGKK 354 Query: 370 MRPGEPPTREAAESLFEN---------LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 +RP R + F + ED +D+ + R+ + +++ + SG + Sbjct: 355 IRP-----RVLGKGFFSSNKDRAPKSKQMILEDTHDI--LSRVLLSHIPMKDCRDFSGKI 407 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL- 479 + + +++++ N +DD DH GN+R+ G+M F + +K+ + Sbjct: 408 KTLSL--MAHRVLNVVNNVEPLDDKDHYGNKRLELAGQMISILFEDFYKKFLSNMKKSIE 465 Query: 480 -------------------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 + D+ LMP D+I +A G+ + +F + + Sbjct: 466 SILVKYLEANPNPAKGENSNFPDIFGLMPTDIITNGMQNAIAT---GNWNIKRFRMEKSG 522 Query: 521 LSE-ITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLI 572 +S+ ++ IS++G +T+ + FE R + P+ +G +CP +TPEG + GL+ Sbjct: 523 VSQVLSRLSYISSIG--MMTKTDSQFEKGRKVSGPRALQPSQFGILCPCDTPEGESCGLV 580 Query: 573 NSLSVYAQTNEYGFLETPY-RKVTDGVVTDEIHYLSAIEEGNYVIAQA---NSNLDEEGH 628 +LS+ + TP + + + I LS+ + N + ++ L+ Sbjct: 581 KNLSLMTHVTSD--VPTPVLETLLFTLGVEPIDTLSSHDMFNPWKGTSEKCDNLLNARLV 638 Query: 629 FVEDLVTCRSKG-ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 + ++ + + + S ++ + VSV E+ N+ + ++ R Sbjct: 639 LLNGILLGIHRNAKFLVNSIIKLRRRGL-INMFVSV-------YENSQQNQVHISSDGGR 690 Query: 688 QAVPTLRADK--PLVGTGMERAVAVDSGVTAVAKRGGVVQYVD---ASRIVIKVNEDEMY 742 P + P + + + + + G+++++D + ++I + E ++ Sbjct: 691 LCRPLIVVQNSVPRLTDELVQQLVENKIKMEYLFNNGILEWIDVNEENNLLIVMREKDIT 750 Query: 743 PGEAGIDIYN---------LTKYTRSNQ---NTCINQMPCVSLG----------EPVERG 780 ++I L + NQ NT M S+G + V Sbjct: 751 NLTTHLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQFQRCDTVVHL 810 Query: 781 DVLADGP--------STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 P + +L GQN VA M + GY ED+I++++ + Sbjct: 811 MNYTQQPLVTTKTIQLVNFDKLPAGQNAIVAVMSYQGYEIEDAIILNKASIDRGFARCYT 870 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 ++ L C T + P+ + S + ++ +G +V+ G +L+ P + Sbjct: 871 LRRLTCEI--TSGNATSLNGFNPSKSQNKDSDSNNEFVIGVGEQVSPGQVLISTKAPPTD 928 >UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella terrestris RepID=B2X254_9CHLO Length = 808 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 126/272 (46%), Positives = 176/272 (64%), Gaps = 4/272 (1%) Query: 467 GLVRVERAVKER--LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 G + ++ +E + L D INA+ ++ A++EFFG+S LSQF+DQ NPL+EI Sbjct: 496 GFDKEKKNFREAPEFLITRKKNLRISDFINARYVNGALREFFGTSPLSQFLDQINPLAEI 555 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR + LGPGG++ + A VR +HPTHYGR+CP+ETPEG N GL+N+L+ YA+ N Sbjct: 556 THKRRFTLLGPGGVSEDTATMAVRGIHPTHYGRICPVETPEGKNAGLVNTLTGYARVNSD 615 Query: 585 GFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 G +ETP+ KV + + +LS +E V+A + ++ + G + + RS GE Sbjct: 616 GLIETPFLKVFKSQIQKKKGFFFLSPEQEEKSVLATGDLSISKTGFLPKGFLPARSLGEF 675 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 + S V +M VS Q++SV SL+PFLEHDDANRALMGANMQRQAVP R+++P+VGT Sbjct: 676 TKVSSKSVGFMSVSPIQLISVATSLVPFLEHDDANRALMGANMQRQAVPLARSEQPIVGT 735 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 G E DSG AK GG V Y A+++V+ Sbjct: 736 GTEAKAISDSGAAVRAKFGGFVCYASANKVVV 767 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 27/284 (9%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFDV 82 P +S+Q SF +F+E+ GL F PI + S +L + Y+L P ++ Sbjct: 9 PDFVSLQRKSFFRFLEK------GLVEEFSKRSPITNISKGLKLCFYPEFYKLVPPKWNP 62 Query: 83 QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 + + TYSA L V ++L ++ K+I + ++ ++PLMT+ G F++NG Sbjct: 63 NKAILYDRTYSAKLFVPVQLTSFK-------TKEIVFEWAFLCDLPLMTNRGHFLVNGVA 115 Query: 143 RVIVSQLHRSPGVFF----------DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 RVI++Q+HR PG+++ D + + S Y A +I RG+WL D K+ Sbjct: 116 RVIINQIHRGPGIYYTKTTKKKEILDVETDRKSFSNLTRYYADVISMRGNWLRLSVDSKN 175 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE--IRDNKLQMELVPERLRGET 250 + + + K+P L E I + +N L EL E+ Sbjct: 176 RFWAEMKKTPKIPLLWFLLGTGLRKETIFSKINNSSLLYDSFCNNILLSELDQEKYFYVD 235 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 ++F V KG++ R L + K P Y G Sbjct: 236 STFSAHEKMSSLVLKGKQKNTGKKRNLREWFYKHFMNPRTYDLG 279 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 104/284 (36%), Gaps = 33/284 (11%) Query: 228 VIFEIRDNKLQMELVPER-LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 F+ ++ + + + L F + +V + + R + + K ++++ Sbjct: 83 TSFKTKEIVFEWAFLCDLPLMTNRGHFLVNGVARVIINQIHRGPGIYYTKTTKKK-EILD 141 Query: 287 VPVEYIAGKVVAKDYID-------------ESTGELICAANMELSLDLLAKLSQSGHKR- 332 V + + + + Y D +S + LL L +G ++ Sbjct: 142 VETDRKSFSNLTRYYADVISMRGNWLRLSVDSKNRFWAEMKKTPKIPLLWFLLGTGLRKE 201 Query: 333 --IETLFTNDLDHGPYISETL----------RVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + + L + + + L VD T + + + + Sbjct: 202 TIFSKINNSSLLYDSFCNNILLSELDQEKYFYVDSTFSAHEKMSSLVLKGKQKNTGKKRN 261 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-----GSGILSKDDIIDVMKKLIDI 435 F F + YDL GR+ NR L + L+ D++ L+ + Sbjct: 262 LREWFYKHFMNPRTYDLGPHGRLCINRKLGLSFTQSALLNKMSTLTPYDLLFATDYLLKL 321 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 G G DDID+L NRR+R+ + + Q +GLVR+E+ ++++L Sbjct: 322 LAGLGTTDDIDNLKNRRVRTSSDFIQLQIGIGLVRLEKKIRDKL 365 >UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVD4_PHATR Length = 1211 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 159/400 (39%), Gaps = 70/400 (17%) Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAE 1016 K + + I + G+ R+ + G V K + P D + D + + Sbjct: 868 DKRFARYMAIDKDGI-CRVGEKIENGSVMVNK--ESPADTTSNMAGVDFGFNSGMSMAHL 924 Query: 1017 QYDELKHEF--EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 Y + + IT ++ ++KV L RR + GDK A RHG KG Sbjct: 925 NYKPSGVSYRGSASTYVDKVLITSNENEQ----FLIKVMLRQVRRPEIGDKFASRHGQKG 980 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V I P ED+P++E G D+++NP G PSRM +G++LE +G A G Sbjct: 981 VCGLIVPEEDLPFNEFGHVPDLIMNPHGFPSRMTVGKLLELLVGKAGLYEG--------- 1031 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 ++ S F +E Sbjct: 1032 ----------------------RQGYSSAFGEE------------------FGSADTAQS 1051 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 E L L +G+ LY G GE + + G ++ KL H+V DK HAR+ G +++ Sbjct: 1052 ASEALLRNGLNYTGKDILYSGTNGEPLDAYIFSGPVFYQKLKHMVLDKAHARARGPRAVL 1111 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----------M 1304 T+QP G+++ GG R GEME L AYG + + E L SD + Sbjct: 1112 TRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLIMERLMHSSDAFSANVCLTCGLLQYEGW 1171 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGI--NIELEDE 1342 + G + +P + +L +E++S+ + + L+D+ Sbjct: 1172 CQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLQDK 1211 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 99/548 (18%), Positives = 192/548 (35%), Gaps = 111/548 (20%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK-------- 476 I ++++++ + GK +DD D+ GN+R+ G + F + +K Sbjct: 382 IGHIVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKIFNKDLKRQADLVLS 441 Query: 477 --ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISAL 533 R D+ + D I I+A G+ L +F MD+ ++ +SAL Sbjct: 442 KPNRTQAFDVVKTIRPDTITNGMINAIAT---GNWVLKRFRMDRAGVTQVLSRLSYMSAL 498 Query: 534 GPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 G +TR + FE R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 499 G--MMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEA 556 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNLDEEGHFVEDLVT----CRSKG 640 P ++ + +++ ++ E ++ + N + +LV R +G Sbjct: 557 DTRPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRNLRKMRRRG 616 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL----RAD 696 + + HD+ + + R P L Sbjct: 617 ----------------------LAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIVDEETG 654 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR-----IVIKVNEDEMYPGEAGI--- 748 P + ++A+ + R G+V+YVD + I + + E+ Sbjct: 655 LPKLQQIHMESLALGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAILHGLETRK 714 Query: 749 ------------------DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD--------- 781 I + +S +NT M ++G V Sbjct: 715 MRYTHLEVDPFTILGVVGGIIPFPHHNQSPRNTYTVAMAKQAMGS-VSMNQYERMDGLIY 773 Query: 782 --VLADGPSTDLGELAL--------GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 + P L L G N +A M ++GY+ ED+I++++ V + Sbjct: 774 TLIYPQKPMVKSRTLDLVNFDNIPGGHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCM 833 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGE----------AALSKLDESGIVYIGAEVTGGD 881 +++ R G + T P+ G A +D+ GI +G ++ G Sbjct: 834 VLRKHQTSVRRYANGTMDRTCAPPDPGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGS 893 Query: 882 ILVGKVTP 889 ++V K +P Sbjct: 894 VMVNKESP 901 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 71/243 (29%) Query: 24 VPYLLSIQ------LDSFQKFIEQDPEGQYGLEAAFRSVFPIQS-YSGNSELQYVSYRLG 76 +PY L ++ +DSF F++ + + S I+S + L+Y + +G Sbjct: 71 LPYFLRLRSLLRQHIDSFDHFVDVEMQQ----IVQSPSACEIRSEHDPKFYLRYEACWVG 126 Query: 77 EPV-----FDVQ-----ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 EP + V+ +C++R TYSAP+ V +R + + +++V +G Sbjct: 127 EPSVEEDSYSVKSATPFQCRLRDCTYSAPIYVNVR--------YTRGRQIVVKRKVMIGR 178 Query: 127 IPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKG 162 +P+M G FVI G E+VI+ Q S + Sbjct: 179 MPIMLRSKKCLLRDRSEDDLAGMKECPYDPGGYFVIKGVEKVILIQEQLSKNRVILEEDN 238 Query: 163 K------THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNY 215 K T S+ + A I+ ++++ + +P ++L+A+ Sbjct: 239 KGIMASITSSTHERKSKAYIL-----------IKNGRVYLKNNTLGDDIPVAVVLKAMGI 287 Query: 216 TTE 218 ++ Sbjct: 288 ESD 290 >UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4530 Tax=cellular organisms RepID=RPB2_YEAST Length = 1224 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 92/427 (21%), Positives = 167/427 (39%), Gaps = 78/427 (18%) Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 +F R ++++K+ ++ ++ + ++ L+A GV + + Sbjct: 854 LFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDD--DGLIAPGVRVS-GEDV 910 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 + + +EE + +++ + + +T D LK VKV Sbjct: 911 IIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD----GLKFVKV 966 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 + + Q GDK A RHG KG I EDMP+ G D+++NP +PSRM + + Sbjct: 967 RVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHL 1026 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 +E L K+ A+ + + + Sbjct: 1027 IECLL--------SKVAALSGNEGDASP-------------------------------- 1046 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 F I +LL+ + G +Y+G TG++ + G Y Sbjct: 1047 --------------FTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYY 1092 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME + A+GAA L+E L Sbjct: 1093 QRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLM 1152 Query: 1293 VKSD----DVNGRTKM-------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 SD + G + K + + +P + +L +E+ ++ I Sbjct: 1153 EASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1212 Query: 1336 NIELEDE 1342 L + Sbjct: 1213 TPRLYTD 1219 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 124/661 (18%), Positives = 244/661 (36%), Gaps = 119/661 (18%) Query: 397 LSAVGRMKFNRSLLREEIEGSGI-------LSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 + R+++ + +L++E + ++ +L+ + + DD DH G Sbjct: 343 IKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFG 402 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + F+ ++ + + + + + INAK I++ +K Sbjct: 403 KKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALA 462 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR + + R+ + R +H TH Sbjct: 463 TGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNT----PIGRDGKLAKPRQLHNTH 518 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G VCP ETPEG GL+ +LS+ + + G P + + + + Sbjct: 519 WGLVCPAETPEGQACGLVKNLSLMSCIS-VGTDPMPIITFLSEWGMEPLEDYVPHQSPDA 577 Query: 615 VIAQAN----SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP- 669 N +E L T R KG+ + D + ++ + + Sbjct: 578 TRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIRE-KELKIFTDAGRVYRP 636 Query: 670 -FLEHDDANRALMGANMQRQA----VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 F+ DD + +G + + + + G E V+ + G+V Sbjct: 637 LFIVEDDES---LGHKELKVRKGHIAKLMATEYQDIEGGFED---VEEYTWSSLLNEGLV 690 Query: 725 QYVDASR---IVIKVNEDEMYPGEAG---------------------------------- 747 +Y+DA I+I + +++ P EA Sbjct: 691 EYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILG 750 Query: 748 --IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS----------------- 788 I + +S +NT + M ++G + +V D + Sbjct: 751 VAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME 810 Query: 789 -TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 EL GQN VA ++GYN EDS+++++ + F ++ + + + Sbjct: 811 YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSI 870 Query: 848 EEITADIP------NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 E T + P + KLD+ G++ G V+G D+++GK TP + EE Sbjct: 871 TE-TFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE---EELG 926 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDK---RALEIEEMQLKQAK 957 R + K +D+S + + +G V V V T +DG++ K R +I ++ K A Sbjct: 927 QRTAYHSK----RDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFAS 982 Query: 958 K 958 + Sbjct: 983 R 983 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 73/384 (19%), Positives = 140/384 (36%), Gaps = 79/384 (20%) Query: 27 LLSIQLDSFQKFIEQD------PEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF 80 L+S QLDSF +F++ + LE + + S E+ + + +P+ Sbjct: 43 LVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMV 102 Query: 81 D----------VQECQIRGVTYSAPLRVKLRLVIYE------REAPEGTVKDIKEQE--- 121 + QE ++R +TYS+ L V ++ YE RE + + E + Sbjct: 103 NESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSES 162 Query: 122 --VYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGV 155 V++G +P+M + G F+ING+E+V+++Q RS G Sbjct: 163 GKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQ-ERSAGN 221 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSW----LDFEFDPKDNLFVRIDR------RRKLP 205 K S + R +GS L + ++ R + ++ +P Sbjct: 222 IVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIP 281 Query: 206 ATIILRALNYTTE-QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE---ANGKV 261 II RAL + +IL+ V + V + + ++ G Sbjct: 282 IVIIFRALGIIPDGEILEHICYDVNDWQMLE-MLKPCVEDGFVIQDRETALDFIGRRGTA 340 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK------------VVAKDYIDESTGEL 309 K + L+K+ + I + + K + A D D+ + Sbjct: 341 LGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDH 400 Query: 310 ICAANMELSLDLLAKLSQSGHKRI 333 ++L+ LLA+L ++ K++ Sbjct: 401 FGKKRLDLAGPLLAQLFKTLFKKL 424 >UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926601 Length = 1371 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 97/432 (22%), Positives = 163/432 (37%), Gaps = 94/432 (21%) Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVA--GGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 ++ ++L +++ + + +L ++ E L + GL ++ Sbjct: 988 IELLWEELDRKVRETQPSSRESLWNMLEEQWNAIQPEILRSDEESSTFKSGLLGKDGLPP 1047 Query: 1011 LEQLAE---QYDELKHEFEKKLEAKRRK----------ITQGDDLAPGVLKIVKVYLAVK 1057 + + + Y H + + + K G D L V + L ++ Sbjct: 1048 IGRFMQHGDPYYSYYHIINGEYKTVKYKHMEPAYIDDIKILGSDKGDRELLKVSIKLRIQ 1107 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R GDK A RHG KG++S P E+MP+ E+G DI+ NP G PSRM IG ++E+ Sbjct: 1108 RNPIIGDKFASRHGQKGILSVKWPAENMPFTESGMIPDIIFNPHGFPSRMTIGMMIESMA 1167 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G +A G D + F E A Sbjct: 1168 GKSAALHG-------------------------------ITHDSTPFIFSEKKPAAH--- 1193 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 + E+L G R+Y G G++ + + +G +Y +L H Sbjct: 1194 ----------------YMGEILVKAGYNYYGNERMYSGINGKEMDVDIFIGIVYYQRLRH 1237 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD- 1296 +V DK RSTG +T QP+ G+ + GG RFGEME AL A+G+ + L + L SD Sbjct: 1238 MVADKYQVRSTGPVDNLTHQPVQGRKRQGGIRFGEMERDALIAHGSGFLLHDRLFNCSDR 1297 Query: 1297 ---DVNGRT------------------------KMYKNIV-DGNHQMEPGMPESFNVLLK 1328 V + K + + G+ + +P F L+ Sbjct: 1298 CETHVCTKCGSIFTPIVRKPVTHHDSLIGFNDRKWFCRVCGHGDDIQKMLVPYVFKYLIA 1357 Query: 1329 EIRSLGINIELE 1340 E+ ++ I + L+ Sbjct: 1358 ELTAMNIRLVLD 1369 Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 24/177 (13%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL 484 +I + +KL + N K + D+ N + G + + L ++E Sbjct: 341 LIYMTQKLFALANDKCAAESPDNPMNHEVLLGGHT----YLLVLKQMESF---------- 386 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + +S + ++ +S D+ N + ++H R + G E Sbjct: 387 -------LATGNILSKSGLGLMQATGMSVVADKLNFMRYLSHFR---CIHRGAFFTEMRT 436 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 VR + P +G +CP+ TP+G GL+N L+ + + + K+ + Sbjct: 437 TTVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAAACKVENTKYPTSDLIKLLVKLGMQ 493 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 100/286 (34%), Gaps = 61/286 (21%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP--IQSYSGN-SELQYVSYRLGEPVF 80 + + ++SF +E GL A + + P + G +E+ + +G PV Sbjct: 28 LQEFIQPHIESFNYILE------NGLNEAVKLIIPQEFELPDGRRAEISILDCSIGTPVV 81 Query: 81 D------------VQECQIRGVTYSAPLRVKLR------LVIYEREAPEGTVKDIKEQEV 122 D EC+ R TY A L V L+ L ++ +K + Sbjct: 82 DDNNFTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVTKSIAQVPVMVKSKNC 141 Query: 123 YMGEIPLMTD-------------NGTFVINGTERVI--VSQLHRSPGVFFDSDKGKTHSS 167 + + T G F++NG E+++ + R+ + + K+ S Sbjct: 142 SLANL---TPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRNYPL---AMVRKSWKS 195 Query: 168 GKVLYNARIIPYRGSW---------LDFEFDPKDNL-FVRIDRRRKLPATIILRALNYTT 217 L+ + R L + D L F+ + +P +IL+AL + Sbjct: 196 RGPLFTEFGVSIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKEQFFVPLALILKALTANS 255 Query: 218 EQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +Q +++++ D+ ++V LR + N + Sbjct: 256 DQ---YIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQNDVLKY 298 >UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota RepID=B6KTL0_TOXGO Length = 1388 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 96/326 (29%), Positives = 137/326 (42%), Gaps = 39/326 (11%) Query: 1042 LAPGVLKIVK--VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 LA LK + + L R+ GDK A RHG KG++S + P EDMP+ E+G DI+ N Sbjct: 1047 LAKSGLKGCRASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLVPDILFN 1106 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ G AA G +A ++ + G K Sbjct: 1107 PHGFPSRMTIGMLIESMAGKAAAVHGAYQDATPFREFPPQSADGKNKWVDQGGYHGWVKR 1166 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 + EE + + TPV + L G LY G G Sbjct: 1167 GERYRTPEEERQAQDEPE------TPV------DYFGKALMRAGYQYYGTEELYSGVYGV 1214 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + G +Y +L H+V DK R+TG +T QP+ G+ + GG RFGEME AL Sbjct: 1215 PLTAHIFTGLIYYQRLRHMVTDKHQVRATGPVDALTHQPVKGRKRHGGVRFGEMERDALI 1274 Query: 1280 AYGAAYTLQEMLTVKSD--------------------DVNGRTKMYKNIVDGNHQME--- 1316 ++GAA LQ+ L SD ++ GRT K V + Sbjct: 1275 SHGAAALLQDRLLHCSDAHKTFCCPSCGSILTPSAVPNLRGRTAGGKRAVPFCRVCQVPC 1334 Query: 1317 --PGMPESFNVLLKEIRSLGINIELE 1340 +P F L E+ ++ + I L+ Sbjct: 1335 RLIMVPYVFRYLANELAAMNVTIRLK 1360 Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 32/183 (17%) Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV------RVERAVKERL 479 + + KKL ++ GK + +D + + G++ + + L R+ + R+ Sbjct: 402 LLMYKKLRLLKQGKISAESLDSFAYQEVVLPGQILASVLKDALFSCLAKIRLHYLQEIRM 461 Query: 480 SLGDLD-------TLMPQDMINAK---PISAAVKEFFGSSQL--SQF-----------MD 516 + + D+ + I+ + F + + +Q D Sbjct: 462 LKNSGNDPTAAIYSNKFFDLATDRCCPEIAQKLSYFMATGNIRTTQLDLQQLSGWTVTAD 521 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + N ++H R A+ G VR + +G +CP+ TP+G GL+ L+ Sbjct: 522 RLNVHRFLSHFR---AVHRGQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAPCGLLLHLT 578 Query: 577 VYA 579 A Sbjct: 579 QSA 581 Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 19/163 (11%) Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN---QMPCVSLGEPVERGD 781 Y ++ + + +M G +++ R + Q P V + Sbjct: 849 PYSHHNQSPRNIYQCQMLKQTMGTPFHSIP--FRHDNKAYRLITPQRPLVRTEDYRR--- 903 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 D + G N VA M + G++ ED++++++ ++ F + + Sbjct: 904 -------FDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVIDAA 956 Query: 842 DTKLGPEEIT-ADIPNVGEAALSK---LDESGIVYIGAEVTGG 880 + NV E LD G IGA++ G Sbjct: 957 PASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKG 999 >UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota RepID=C4Q1D7_SCHMA Length = 1304 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 80/306 (26%), Positives = 122/306 (39%), Gaps = 69/306 (22%) Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 K KV + + Q GDK A RHG KG EDMP+ G DI++NP +PS Sbjct: 1040 GNKFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPS 1099 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM IG ++E G + Sbjct: 1100 RMTIGHLIECLQGKVSAN------------------------------------------ 1117 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 + + ATP D +I LL+ +G +Y+G TG + + Sbjct: 1118 -----------KGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQI 1166 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +G Y +L H+VDDK+H+RS G ++ +QP+ G+++ GG RFGEME A+GAA Sbjct: 1167 FLGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQ 1226 Query: 1286 TLQEMLTVKSDDVN----------------GRTKMYKNIVDGNHQMEPGMPESFNVLLKE 1329 L+E L SD +T ++ + +P + +L +E Sbjct: 1227 FLRERLFFASDPYQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQE 1286 Query: 1330 IRSLGI 1335 + S+ I Sbjct: 1287 LMSMSI 1292 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 107/608 (17%), Positives = 218/608 (35%), Gaps = 98/608 (16%) Query: 397 LSAVGRMKFNRSLLREE-------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 ++ R+K+ + +L++E + + ++ +L+ + +VDD DH G Sbjct: 456 VTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYG 515 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 N+R+ G + FR + + ++ + + + I ++ I+ +K Sbjct: 516 NKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLA 575 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR+++ + R+ R +H T Sbjct: 576 TGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNS----PIGRDGKLARPRQLHNTL 631 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G +CP ETPEG +GL+ +L++ A + G +P + + + + ++ G Sbjct: 632 WGMICPAETPEGHAVGLVKNLALMAYIS-VGSQPSPILEFLEEWSMENLEEIAPSAIGKT 690 Query: 615 VIAQANSNLDEEGHFVEDLV-TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 N + L+ T R +V + Q + + + + Sbjct: 691 CKIFVNGCWVGIHSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRI------YTDA 744 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 R L+ + + + + + A + GVV+Y+D Sbjct: 745 GRICRPLVIVEKGKLLLKRSHIE-------LLKDKAYNRYSWQDLVLSGVVEYIDTLEEE 797 Query: 734 I------------------KVNEDEMYPG---EAGIDIYNLTKYTRSNQNTCINQMPCVS 772 E++P I + +S +NT + M + Sbjct: 798 TVMIAMGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQA 857 Query: 773 LGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMPWNGYNFED 814 +G + D + EL G N VA + GYN ED Sbjct: 858 MGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQED 917 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN------VGEAALSKLDES 868 S++++E +Q F + + + EE+ + PN + A KLD+ Sbjct: 918 SVIINESAIQRGFFRSEFYRTYKDQETRHGMDLEEV-FEKPNPQNCQGMRHAIYDKLDDD 976 Query: 869 GIVYIGAEVTGGDILVGKVT--PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 G++ G V+G D+L+GK P+ E ++ G++ +D+S+ + G Sbjct: 977 GLIAPGTRVSGDDVLIGKTITLPENEDEMEG---------GQRRYTKRDASVFMRRSEYG 1027 Query: 927 TVIDVQVF 934 V V V Sbjct: 1028 IVDQVMVT 1035 Score = 86.3 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 132/902 (14%), Positives = 274/902 (30%), Gaps = 180/902 (19%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPE------GQYGLEAAFRSVFPIQSYSGNSELQYV 71 D L+ QLDSF +FI+ + L+A + I L++ Sbjct: 156 ISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGGILETPVQYRLKFE 215 Query: 72 SYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 L + + ++R +TY+APL V + I E E + K Sbjct: 216 QIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIRDEIEEEKPLEKK--- 272 Query: 122 VYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFF 157 ++G+IP+M G F+ING+E+V+++Q + + Sbjct: 273 -FIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 331 Query: 158 DSDKGKTHSSGKV-LYNARIIPYRGS---WLDF------EFDPKDNLFVRIDR-----RR 202 + + + K + + R + W++ + + + RI ++ Sbjct: 332 VFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDGSKRATIGQRIVAILPYIKQ 391 Query: 203 KLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 ++P I+ RAL + IL+ ++ L + + + G Sbjct: 392 EIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLD-DAFVIQEQKVALNFIGSR 450 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 G R E + + V D+ + + + L Sbjct: 451 GARPGVTKEKRIKYAKEILQKETLP--------HVGVSDFCETRKAYFL---GYMVHRLL 499 Query: 322 LAKLSQSGHKRIETLFTNDLDH-GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 LA L + + LD GP ++ R N + + + G+ E Sbjct: 500 LAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLEL 559 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 A + +Y L+ G + + S +L++ + L + + G Sbjct: 560 AIR--SQIITDGLKYSLAT-GNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIG 616 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA 500 G++A ++ + + + ++ + A Sbjct: 617 RD--------------GKLARP------RQLHNTLWGMICPAETPEGHAVGLVKNLALMA 656 Query: 501 AVKEFFGSSQLSQFMDQ------------------------------NNPLSEITHKRRI 530 + S + +F+++ ++P + R++ Sbjct: 657 YISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKL 716 Query: 531 S-----ALGPGGLTRERAGFEVRDVHPTHYGRVC-PIETPEGPNIGLINSLSVYAQTNEY 584 + + R+ E+R T GR+C P+ E + L + Sbjct: 717 RRQVDVIVSEVSMIRDYRDQEIRI--YTDAGRICRPLVIVEKGKL-----LLKRSHIELL 769 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 D V++ + Y+ +EE +IA + + ++ + C Sbjct: 770 KDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCKTHTHC-------- 821 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV-------------- 690 ++ ++ + AS+IPF +H+ + R + M +QA+ Sbjct: 822 ---------EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTL 872 Query: 691 --PTLRADKPLVGT-GMERAVAVDSGVTAVAKRGGVVQYVDASRIV-IKVNEDEMYPGEA 746 KPLV T ME + A + Y ++ + +NE + G Sbjct: 873 ANVLYYPQKPLVATRSMEYLRFRELPAGINAIVA-IATYTGYNQEDSVIINESAIQRGFF 931 Query: 747 GIDIYNLTKYTRSNQNTCINQ-----MPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + Y K + + + P G D L D G G ++ Sbjct: 932 RSEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVL 991 Query: 802 VA 803 + Sbjct: 992 IG 993 >UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=128 Tax=Eukaryota RepID=RPB2_HUMAN Length = 1174 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 117/306 (38%), Gaps = 69/306 (22%) Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 K K+ + R Q GDK A RHG KG EDMP+ G DI++NP +PS Sbjct: 915 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 974 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM IG ++E G + Sbjct: 975 RMTIGHLIECLQGKVSAN------------------------------------------ 992 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 + + ATP D +I LL G LY+G TG + + Sbjct: 993 -----------KGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQI 1041 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +G Y +L H+VDDK+H+R+ G ++ +QP+ G+++ GG RFGEME A+GAA Sbjct: 1042 FIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQ 1101 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNI------------VDGN----HQMEPGMPESFNVLLKE 1329 L+E L SD I G MP + +L +E Sbjct: 1102 FLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQE 1161 Query: 1330 IRSLGI 1335 + S+ I Sbjct: 1162 LMSMSI 1167 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 118/639 (18%), Positives = 237/639 (37%), Gaps = 107/639 (16%) Query: 397 LSAVGRMKFNRSLLREE-------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 ++ R+K+ + +L++E + + ++ +L+ G+ E+DD DH G Sbjct: 330 VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYG 389 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAKPISAAVKEFFG 507 N+R+ G + FR + + V+ + + I + IS +K Sbjct: 390 NKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLA 449 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR+++ + R+ + R +H T Sbjct: 450 TGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS----PIGRDGKLAKPRQLHNTL 505 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS----AIE 610 +G VCP ETPEG +GL+ +L++ A + G +P + + + + +S A Sbjct: 506 WGMVCPAETPEGHAVGLVKNLALMAYIS-VGSQPSPILEFLEEWSMENLEEISPAAIADA 564 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 +V + + L R + + + + + ++ + + Sbjct: 565 TKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI--- 621 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA- 729 R L+ +++Q + + + ER S VA GVV+Y+D Sbjct: 622 ------CRPLLI--VEKQKLLLKKRHIDQLK---EREYNNYSWQDLVA--SGVVEYIDTL 668 Query: 730 --SRIVIKVNEDEMYPGEAGI-------------------DIYNLTKYTRSNQNTCINQM 768 +++ + D++ E I + +S +NT + M Sbjct: 669 EEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM 728 Query: 769 PCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMPWNGY 810 ++G + V D + EL G N VA + GY Sbjct: 729 GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGY 788 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI----TAD-IPNVGEAALSKL 865 N EDS++++ V F ++ + EE+ T + + A KL Sbjct: 789 NQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKL 848 Query: 866 DESGIVYIGAEVTGGDILVGKVT--PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 D+ G++ G V+G D+++GK P+ E +L + +D S + Sbjct: 849 DDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK---------RDCSTFLRTS 899 Query: 924 VSGTVIDVQV-FTRDGVEKDK---RALEIEEMQLKQAKK 958 +G V V V ++G + K R++ I ++ K A + Sbjct: 900 ETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 938 Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 136/777 (17%), Positives = 255/777 (32%), Gaps = 137/777 (17%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI------QSYSGNSE---- 67 D L+ QLDSF +FI+ + PI Q SG E Sbjct: 30 ISSYFDEKGLVRQQLDSFDEFIQMSV------QRIVEDAPPIDLQAEAQHASGEVEEPPR 83 Query: 68 --LQYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 L++ L +P E ++R +TYSAPL V + + + + Sbjct: 84 YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQT- 142 Query: 116 DIKEQEVYMGEIPLM-----------TDN-------------GTFVINGTERVIVSQLHR 151 + Q+ ++G+IP+M TD G F+ING+E+V+++Q Sbjct: 143 --QHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200 Query: 152 SPG-VFFDSDKGKTHSSGKVLYNARIIPYRGS---WLDF-----EFDPKDNLFVRIDR-- 200 + V+ + K ++ + R + W+ + K + RI Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260 Query: 201 ---RRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 ++++P I+ RAL + + IL+ ++ L E + + + Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD-EAFVIQEQNVALN 319 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 G + G R E +++ + ++ L+ AA Sbjct: 320 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAA--- 376 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 L L G+KR++ + + L + R+ A I R G+ Sbjct: 377 LGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE---VRIYAQKFIDR----GKDF 429 Query: 377 TREAAESLFENLFFSEDRYDL--SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 E A + +Y L G K + L+ + +++L Sbjct: 430 NLELAIK--TRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS 487 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGE----------MAENQFRVGLVRVERAVKERLSLGDL 484 G++ L N V + +N + + V L + Sbjct: 488 PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE 547 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS--ALGPGGLTRER 542 ++ + I+ I+ A K F + D ++ + RR + + R+ Sbjct: 548 WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI 607 Query: 543 AGFEVRDVHPTHYGRVC-PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 E+R T GR+C P+ E + L ++ E D V + Sbjct: 608 REREIRI--YTDAGRICRPLLIVEKQKLLLKKR-----HIDQLKEREYNNYSWQDLVASG 660 Query: 602 EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 + Y+ +EE ++A +L E+ E + S + ++ ++ Sbjct: 661 VVEYIDTLEEETVMLAMTPDDLQEK--------------EVAYCSTY--THCEIHPSMIL 704 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAV----------------PTLRADKPLVGT 702 V AS+IPF +H+ + R + M +QA+ KPLV T Sbjct: 705 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTT 761 >UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=Rhodospirillales RepID=D1GLJ0_GLUDI Length = 325 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 140/327 (42%), Positives = 190/327 (58%), Gaps = 29/327 (8%) Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+INGTERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++ Sbjct: 1 FIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVIPYRGSWLDFEFDSKDLIY 60 Query: 196 VRIDRRRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIF 230 VRIDR+RKLP T +L AL ++IL F+ +V+F Sbjct: 61 VRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGDVDALEIRGMDADEILGYFYNQVVF 120 Query: 231 EIRDNKLQMELVPERLRGETA--SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 E RG +G+V E ++TAR +R++ + +++ P Sbjct: 121 TKGPKGWARPFDAESFRGLKLLEPLVDAQSGEVVAEADAKLTARMVRKIAETTKEVLVGP 180 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 + G+ VA D ++ TGE+ A EL+ L L ++G ++ TL D +GP+I Sbjct: 181 AG-LIGRYVAHDLVNMETGEIYAEAGEELTEARLEALEEAGVDQLPTLAV-DASNGPWIR 238 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 TL VD R AL +IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR+K N Sbjct: 239 NTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMFSGLFFDADRYDLSAVGRVKMNMR 298 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDI 435 L + + +L K+DI+ +K + ++ Sbjct: 299 LGLDAPDTIRVLRKEDILRTVKIMCEL 325 >UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG45_ENTDI Length = 1170 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 131/316 (41%), Gaps = 69/316 (21%) Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 A K ++V + R Q GDK + RHG KG + EDMP+ G DI++NP Sbjct: 907 AQSGTKYIRVKMRSIRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHA 966 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 +PSRM +GQ++E LG K+ A++ Q Sbjct: 967 IPSRMTVGQLVECLLG--------KVGALVGDVQS------------------------- 993 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 TP +I E L G L+ G TG + + Sbjct: 994 --------------------GTPFQKDITVDKIGERLHKLKYQRRGYEALFSGHTGRKLD 1033 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 V +G Y +L HLVDDK+H R+TG Y+ +T+QPL G+++ GG R GEME + ++G Sbjct: 1034 SLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHG 1093 Query: 1283 AAYTLQEMLTVKSDD----VNGRTKM------------YKNIVDGNHQMEPGMPESFNVL 1326 + L+E L + SD V + M D H + +P + +L Sbjct: 1094 VSSLLKERLFLASDKYQIYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACKLL 1153 Query: 1327 LKEIRSLGINIELEDE 1342 +E+ S+ + + E Sbjct: 1154 FQELMSMAVCPRIYTE 1169 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 132/723 (18%), Positives = 241/723 (33%), Gaps = 131/723 (18%) Query: 321 LLAKLSQSGHKRIET---LFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 L L ++I ND + ++ ++ + A GE Sbjct: 257 LFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTEDA------RRWLGEHSK 310 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 + E + E SE+ L G K + LL + + + + + Sbjct: 311 KTNKEGVIE--IVSENIQKLQRDGTEKLKKDLLPHIGTDNFESKAQFLGYMTNHFLSVYT 368 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINA 495 GK DD DHL +R+ G + F+ L R+ + + +L TL ++ Sbjct: 369 GKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNKTLEYAKPLSF 428 Query: 496 KPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 I++ + G+ +Q + + S + + R+IS+ G +R Sbjct: 429 PTITSDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRKISSPVEG----KRK 484 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP--YRKVTDGVVTD 601 + R +H T +G +CP ETPEG + GL+ LS+ AQ E ++ D Sbjct: 485 TQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVDEIKEALDCQYVC 544 Query: 602 EIHYLSAIEEGNYVIAQANSN----LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 I+ + + N N ++ +E+L R + M + Sbjct: 545 NINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNSTKGKVKK----VMSMVL 600 Query: 658 QQVVSVGASLIPFLEHDDANRAL--MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 Q+ L + + R L + N + ++ T + + +S T Sbjct: 601 DQL---HKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQ----ITELCSRLDNESNGT 653 Query: 716 AVAK------RGGVVQYVDASRIV---IKVNEDEMYPGEAGI------------------ 748 K G+++YVDA I + ++ E G Sbjct: 654 EKTKFWNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNTEGGSSKNYTHCEIHPALVMGVL 713 Query: 749 -DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------------T 789 I + +S +NT M ++G + D Sbjct: 714 GSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAAEYV 773 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK----- 844 G + G N VA ++GYN EDS+++++ + F ++ + + ++ ++ Sbjct: 774 KFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFKTFSEDAKKSETTELM 833 Query: 845 -----LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 EIT DI + K+D GI+ G +V DILV Sbjct: 834 FFKPSENNSEITEDI-----SKYEKVDVDGILAPGTKVKPDDILV--------------- 873 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK----DKRALEIEEMQLKQ 955 + K +KD SLR +G V V V K R++ I ++ K Sbjct: 874 ---AGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRSIRIPQIGDKF 930 Query: 956 AKK 958 + + Sbjct: 931 SSR 933 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 70/433 (16%), Positives = 135/433 (31%), Gaps = 84/433 (19%) Query: 27 LLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGN-SELQYVSYRLGEPVFD 81 L+ QL S+ FI++ +E + V I + + P Sbjct: 28 LVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEHTIVLTDPIFHFPKVS 87 Query: 82 ----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 E ++R +TY+ L VK + I + E T ++ + IP M Sbjct: 88 TGSKASASLFPHEARLRSLTYACQLEVKAKDTIRKNGTEEITT----VPKIDIASIPSML 143 Query: 132 DN-------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHS 166 + G F+I G+E+V+++Q +P + Sbjct: 144 KSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSEKVVIAQEKMAPNTVLVFEGSDQ-- 201 Query: 167 SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR---KLPATIILR------------ 211 K Y I S + + ++D+ R K+P + R Sbjct: 202 -LKYPYEGNINSL-ASNDEVRTHKIRMDYPKLDKSRLKIKVPVLTLSRMDCDVPVVLLFV 259 Query: 212 ALNYTTEQ-ILDLF---------FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 AL Y +Q I++ + V I+ N+ R GE + + Sbjct: 260 ALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTEDARRWLGEHSKKTNKEGVIE 319 Query: 262 YVEKGRRITAR-HIRQLEKDDVKLIEVPV--------EYIAGKVVAKDY--IDESTGELI 310 V + + R +L+KD + I Y+ ++ + + + Sbjct: 320 IVSENIQKLQRDGTEKLKKDLLPHIGTDNFESKAQFLGYMTNHFLSVYTGKRNGDDRDHL 379 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 M ++ L+ +L ++ KR+ L ++TL + + + + Sbjct: 380 ARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNKTLEYAKPLSFPTITSDFTKAL 439 Query: 371 RPGEPPTREAAES 383 G P ES Sbjct: 440 GTGNWPQPGGKES 452 >UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z2_OEDCA Length = 739 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 140/334 (41%), Positives = 190/334 (56%), Gaps = 45/334 (13%) Query: 1010 QLEQLAEQYDELKHEFEKKLEAKRRKITQGD---DLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q ++L ++ D+ + + + D +L + VYLA KR+IQ GDK+ Sbjct: 442 QFQKLRQKKDKKFYSINNDEAEQNVLPRKKDFSLNLFNSKPFTIHVYLAEKRKIQVGDKI 501 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKG++SKI PI+DMPY +G+ VD+VLNPLGVPSRMN+GQI E LG+A +G Sbjct: 502 AGRHGNKGIVSKILPIQDMPYLADGSFVDLVLNPLGVPSRMNVGQIYECLLGLAGYYLG- 560 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + + E I V Sbjct: 561 -------EYYRILPFDEKIGEEASRSF--------------------------------V 581 Query: 1187 FDGAKEAEIKEL-LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 F EA +K L D G+ L+DGRTGE+FE+ V +GY Y+LKL HLVDDK+H+ Sbjct: 582 FSKLYEAGMKTGNYWLFDPKNPGKTYLFDGRTGEKFEQQVMIGYAYILKLVHLVDDKIHS 641 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 RSTG YS VTQQPL G+++ GGQR GEMEVWALE YGAA+TL E+LT+KSDD GR ++ Sbjct: 642 RSTGPYSAVTQQPLRGRSKQGGQRLGEMEVWALEGYGAAFTLLELLTIKSDDKIGRLTIW 701 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 +I+ ++ PESF VL+ E+++L +I + Sbjct: 702 DSILR-QKEISIKTPESFKVLVCELKALCFDIGI 734 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 137/248 (55%), Gaps = 2/248 (0%) Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y+L Y RSNQ+TC+ P ++ G V+ GD+LAD S+ GELA+GQN+ +A+MPW G Sbjct: 10 EYHLENYHRSNQDTCLVHRPTINEGNWVQPGDILADCSSSKNGELAIGQNILIAYMPWEG 69 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN+ED++L+S+R+V ++ +T+IHI+ +T+ G E+IT ++ ++ LS LD++G Sbjct: 70 YNYEDAMLISDRLVYDEIYTSIHIERYEISIEETQFGFEKITKELYDLPGENLSHLDKNG 129 Query: 870 IVYIGAEVTGGDILVGKVTPK-GETQLTPEEKLLRAIFGEKASDV-KDSSLRVPNGVSGT 927 I +G+ + GDILVGKVTP + + + EKLL I G K + KD+SLRVP G+ Sbjct: 130 ITVLGSWLKEGDILVGKVTPTDKKVKYSNYEKLLYDILGTKKQNKGKDTSLRVPKGLEAK 189 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 VI +++ + + I ++ ++ + + Sbjct: 190 VITIEILSDNLSFSLTNFNLISLPNPLIYIQNRFLRFLNIQNKKNINSTHFAFDNKFKNQ 249 Query: 988 KLDKLPRD 995 L R+ Sbjct: 250 FLKISSRN 257 >UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SSB7_ENCCU Length = 1062 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 111/512 (21%), Positives = 202/512 (39%), Gaps = 95/512 (18%) Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE----KLLRAIFGEKASDV 913 G+ ++D+SGI+ I+ G + P + +P ++ + G A ++ Sbjct: 616 GDGDYYEIDKSGILG---------IIAG-LIPYSDHNQSPRNMYQCQMAKQAIGHPAHNI 665 Query: 914 K---DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 + D ++ N + ++ + + + V+ + L D+ + L I + Sbjct: 666 RTRTDPTMYTVNYLQSPIVRTEGY--EMVKDYPVGINCMVAVLSYTAYDMEDALVINKNS 723 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 I L G V + L + + + ++ + + L D+ E+EK+ Sbjct: 724 ----IDRGLFTGYVYKTEKVPLDKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL 779 Query: 1031 AKRRKITQGDDLAPGVLKIVKVY------------LAVKRRIQPGDKMAGRHGNKGVISK 1078 PG++ IV+V+ + + R GDK + RHG KGV S Sbjct: 780 G----------TEPGIVDIVRVFENDMGERCATFTIRIVRSPMIGDKFSSRHGQKGVCSM 829 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 P DMP+ E+G DI++NP PSRM IG ++E+ G G++ + + ++ + Sbjct: 830 HWPGIDMPFTESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKSFL 889 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 + E ++ + Sbjct: 890 LEQEEGDDEKVR----------------------------------------RKEYLCSE 909 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L+ G +Y G G +F + VG +Y +L H+V DK R+ G+ T+QP Sbjct: 910 LRRHGFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVRTKGAVVSTTRQP 969 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD-VNGRTKMYKN---------I 1308 +GG+ + GG RFGEME AL ++GA+Y LQ+ L SD V ++ I Sbjct: 970 VGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSDSTVFEYCGTCRSILFTNNGDCI 1029 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + MP F L E+ ++ I ++++ Sbjct: 1030 CGSSDLKAVEMPYVFKYLCCELLAMNIKVQID 1061 Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 70/511 (13%), Positives = 159/511 (31%), Gaps = 111/511 (21%) Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA--------- 474 +I +KL + + DD D N + + ++ + R + R Sbjct: 307 FLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKTY 366 Query: 475 --------------------VKERLSLGDLDTLMPQDMINAK-----PISAAVKEFFGSS 509 ++ L + + + + IN +S+ S Sbjct: 367 YKLEGEKRKLEGDSVTESGFCEDELDISKIREIFKRTSINIGQRMELFLSSGSITLTSCS 426 Query: 510 QLSQFM------DQNNPLSEITHKRRIS--ALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 + Q + ++ N ++H R ++ P +T +R + P +G +CP+ Sbjct: 427 DILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSMVTS------IRKLRPESWGFLCPV 480 Query: 562 ETPEGPNIGLINSLSVYAQT---NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 TP+G G++ ++ A+ ++ + + + + Sbjct: 481 HTPDGAPCGVLLHMAKEAEVVSRDDDFNTDILFEFGVVPSIRG---------------VE 525 Query: 619 ANSNLDEEGHFV----EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 + G V R E + ++ + S ++ S+ F Sbjct: 526 MGIPVLVNGRVVGSTSSPSDLTRMVREYRNRNGLMIEVVYTSEPKMF---PSVCIFSSVG 582 Query: 675 DANRALMGANMQRQAVPTLRADKPL-------VGTGMERAVAVDSGVTAVAKRGGVVQYV 727 R +M + + + L G G + + +A G++ Y Sbjct: 583 RFARKVMNRRLGSEEWIGIMEQVFLNIDTEEGAGDGDYYEIDKSGILGIIA---GLIPYS 639 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVLA 784 D ++ + + +M G +N+ TR++ Q P V Sbjct: 640 DHNQSPRNMYQCQMAKQAIGHPAHNIR--TRTDPTMYTVNYLQSPIVR-----------T 686 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 +G + +G N VA + + Y+ ED++++++ + FT + Sbjct: 687 EGYEMVK-DYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTG-----YVYKTEKVP 740 Query: 845 LGPEEITADIPNVG------EAALSKLDESG 869 L +P+VG + +D+ G Sbjct: 741 LDKGYFFTYLPSVGQRIQKDDTLYRYVDQDG 771 >UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VXL3_NAEGR Length = 1069 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 101/428 (23%), Positives = 154/428 (35%), Gaps = 98/428 (22%) Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 K DL+E L +F + + +A++ + L D E+GL +E Sbjct: 689 FKTEDIDLTEGTAFLTNRVFDKTE---MDSDYQAKEFEDLDYDGLPEVGLPLDEG----S 741 Query: 1013 QLAEQYDELKHEF----EKKLEAKRRKITQGDDLAPGVLKIVK---VYLAVKRRIQPGDK 1065 A YD K +F K +++ + P K VK + + R GDK Sbjct: 742 IFANYYDPEKQKFMPMKWKDVDSATVHSVKVIATDPSDYKKVKHASITFRLNRNPIIGDK 801 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 + RHG KGV+S + P EDMP+ + G DIV+NP PSRM IG ++E+ A Sbjct: 802 FSSRHGQKGVLSILWPQEDMPFTDGGIVPDIVINPHAFPSRMTIGMLVESMSSKA----- 856 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 GA D + FS E Sbjct: 857 --------------------------GALHGYFPDATPFSFSE----------------- 873 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 + E LK G +Y G G + + +G +Y +L H+V DK Sbjct: 874 --ENTAVDHFGEQLKKAGYNYHGNEVMYSGALGTTLKADIYMGVVYYQRLRHMVSDKYQC 931 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 R G + +T QP+ G+ + GG R GEME AL AYGAA +++ +D Sbjct: 932 RVGGPTNAITHQPVKGRKKAGGVRMGEMERDALVAYGAAAVVKDRFFDCTDSSTAIVCTC 991 Query: 1306 KN----------------------------------IVDGNHQMEPGMPESFNVLLKEIR 1331 N H +P + L E+ Sbjct: 992 CNQMNTIVKPDMGTGSGPIVSGSGIGANLDELLCCVCKTNQHLRTIYIPYTTKYLHSELA 1051 Query: 1332 SLGINIEL 1339 ++G+N+++ Sbjct: 1052 AMGVNLKI 1059 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 99/602 (16%), Positives = 202/602 (33%), Gaps = 110/602 (18%) Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 L +VE+ R P + +++ YD G + + + + Sbjct: 178 TKNKVTLDRVVELLGDFRKTFPTVQTREDAIIA----LGTIYD--PHGLRRLEEPVDKNK 231 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 + SG D ++ ++KL +G+ +++D N + +VGE+ N + + + Sbjct: 232 LIKSGYEKFDFLVYCVQKLYKFVDGEIAEENLDDFDNHELLTVGEVLSNVIPLIIYNKIQ 291 Query: 474 AVK---ERLSLGDLDTLMPQDM--------------INAKPISAAVKEFFGSS------- 509 +L + T+ P + I +K + F Sbjct: 292 LAHGTCAKLLMKSATTMQPDMLEQKYLALFRDKCKSILSKACPNDINRLFSVGDVSVSAP 351 Query: 510 ---QLSQF------MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 +LSQ +++ N L I+H R A G + +R + P+ +G +CP Sbjct: 352 FRPELSQTRALFTKLERINFLRVISHFR---ATHRGIAFLDSNSTRMRRLTPSFWGFICP 408 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV--------TDEIHYLSAIEEG 612 + +P+G GL+N LS + + R V + + T++ +S +E Sbjct: 409 VHSPDGHLCGLVNHLSQTTEIVTHQAKPKELRSVVEMCLKLGMLPSSTEKCISVSIEDEA 468 Query: 613 NYVI---AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 ++ + D+ + + L C+ G+ L +M+++ Q S IP Sbjct: 469 PVMLDGAIIGKVSHDKLQNLADQLRYCKVSGKYGLPK-----FMEIACQPKYSAMD--IP 521 Query: 670 FL----EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 +L D RA+ P + TG + + S V+ Sbjct: 522 YLPQLNIFTDIARAV---------RPVRY-----LPTGQDEWIG--SAEQVFMNIAVTVE 565 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 + + ++++ + + + +S + QM S+ D D Sbjct: 566 DIKPNTTHMEIDPTNFMSFLGNLTPFC--NFNQSPRCIYQCQMAKQSMAAVFHSVDHRVD 623 Query: 786 GPSTDLG------------------ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 D+ E G N VA + + GY+ ED++++++ + Sbjct: 624 TKLFDMKLPQKPLTRTKHQTDLPFDEFNNGCNAVVAVISYTGYDMEDAMIMNKTSYERGM 683 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGE-------AALSKLDESGIVYIGAEVTGG 880 +H D G +T + + E LD G+ +G + G Sbjct: 684 ---MHGTVFKTEDIDLTEGTAFLTNRVFDKTEMDSDYQAKEFEDLDYDGLPEVGLPLDEG 740 Query: 881 DI 882 I Sbjct: 741 SI 742 >UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=C6LZ34_GIALA Length = 1239 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 151/391 (38%), Gaps = 76/391 (19%) Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 +E + A L G + K R + + E L + + LK E Sbjct: 907 VEDDGLCAVGAHLKTGDIVINK------GRHVTNIPGLSDGPEAAETLIKSPESLKSPLE 960 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 + +T +D ++KV RR + GDK + RHG KGV I D+P Sbjct: 961 TITYIDKVLVTTNND----GNLLIKVLTREPRRPEVGDKFSSRHGQKGVCGLIVSQSDLP 1016 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 + G D+++NP G PSRM + ++LE ++ G++ + + + + Sbjct: 1017 FTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSSCFRGEQTDGTCFRTKTDEEF----- 1071 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 AE+ + L+ Sbjct: 1072 ---------------------------------------------IAELYDSLRAAGFSY 1086 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 SG+ LY G TG+ + G +Y KL H+V DK+H+R TG +++T+QP G+ G Sbjct: 1087 SGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHG 1146 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------------MYKNIVDGN 1312 G R GEME +YGA+ L E + SD+ G Sbjct: 1147 GLRMGEMERDCAISYGASALLLERFMLSSDEFLAYVCEACGLFSYERNGALWCPTCQSGK 1206 Query: 1313 HQMEPGMPESFNVLLKEIRSLG--INIELED 1341 ++ +P + ++++E+ S+G + ++LED Sbjct: 1207 DVVKIRIPYAAKLMIQELISMGVLVRMQLED 1237 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 100/602 (16%), Positives = 208/602 (34%), Gaps = 96/602 (15%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE----NQFRVGLVRVERAVK---- 476 + ++++ I G + D D +GN++I + G++ E + F+ L + R V Sbjct: 422 LATMVRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMARKVDVILR 481 Query: 477 -ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSE 523 ++ DL +++ I+ A + SQ + + + +S Sbjct: 482 SDKNRGTDLTNYDVVSLVDPSIITRAFNSAISTGNWKIERIGVDRVGVSQVLSRLSYIST 541 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 + R+S+ + R ++ + G CP +TPEG ++G++ +LS+ A+ ++ Sbjct: 542 LGQVTRLSS----TFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARISK 597 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 ++ K+ + +++ S + + + G + ++ Sbjct: 598 DENADS-ISKLLMSIGVEDLA--SCWSGDTFSLGYG-YMVFLNGTI-KGVIAKDMLKGFI 652 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + R +S L F +D+ + + R P L + + Sbjct: 653 ITLRTFRRKGYIS---------YLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKLKLT 703 Query: 704 MERAVAVDSGVTAVAK--RGGVVQYVD---ASRIVIKVNEDEMYPGEAGIDI-------- 750 + + + G V+Y+D A I ++ ++ P +I Sbjct: 704 LNDIELLVNNQKCFVDFIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLLGY 763 Query: 751 -YNLTKYTRSNQ---NTCINQMPCVSLG-------EPVERGDVLADGPS----------- 788 L Y NQ N M + G E E L D P Sbjct: 764 VVGLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQFERFETAMFLLDYPQRPLTSTKILKL 823 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 T L GQN V M ++ ++ ED+++++ + + ++ T Sbjct: 824 TGYERLPAGQNATVCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAELNSTGSKSV 883 Query: 849 EITADI----PN---VGEAALSKLDESGIVYIGAEVTGGDILVGK---VTPKGETQLTPE 898 + T D+ P + +++ G+ +GA + GDI++ K VT PE Sbjct: 884 DGTKDVLLGPPKDHLKQYESYHAVEDDGLCAVGAHLKTGDIVINKGRHVTNIPGLSDGPE 943 Query: 899 --EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 E L+++ SL+ P + V V T + + L E + + Sbjct: 944 AAETLIKSP----------ESLKSPLETITYIDKVLVTTNNDGNLLIKVLTREPRRPEVG 993 Query: 957 KK 958 K Sbjct: 994 DK 995 Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 48/220 (21%) Query: 81 DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT--------- 131 EC+ R +TY+AP+ + +R + + + +++ +G IP+M Sbjct: 99 TPHECRQRNMTYAAPITIDVRCRASNKSSVQY------YKDICIGYIPIMLRSNRCILAN 152 Query: 132 ---------------DNGTFVINGTERVIV--SQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 G F++ G E+ I+ Q+ + G+ + A Sbjct: 153 KSRKQQAFFQECPDDPGGYFIVRGAEKSILLAEQITMN-----RIVLGRNTDGNIEVTVA 207 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRK-LPATIILRALNYTTE-QILDLFFEKVIFEI 232 R S + K + +K +P I +A+ + + +L L +F Sbjct: 208 SNTTERKSRCAVLYKNKKFYLIHNKFNKKPIPIVTIFKAMGFVNDVTVLSLIGTDQLFLD 267 Query: 233 ---------RDNKLQMELVPERLRGETASFDIEANGKVYV 263 ++K+ + + + AN V Sbjct: 268 YMSLSVQECSNDKIYTQEQALKYLADRIVVRTYANTNVNF 307 >UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB2_LEPTE Length = 880 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 141/402 (35%), Positives = 212/402 (52%), Gaps = 48/402 (11%) Query: 942 DKRALEIEEMQLKQA-----KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 +K + +E + K D + I++ G + + ++V+ + P ++ Sbjct: 507 NKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRPIGPHNPTPLEK 566 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 + L + + D ++ + + D+ + V+ YL Sbjct: 567 LVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLPS---DVEYSGIGRVEFYLVD 623 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 KRRI GDKMAGRHGNKG+IS I P +DMPY +GTPVD+VLNPLGVPSRMN+GQ+ ET Sbjct: 624 KRRIFVGDKMAGRHGNKGIISNILPKQDMPYLPDGTPVDMVLNPLGVPSRMNVGQVFETL 683 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 LG+A K + + G + + + S + + Sbjct: 684 LGLAGKYLHQHFKVTPFDEV--------------YGPEASRSLVYSKLYEARLK------ 723 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + D + G+ R++DG+TG F++ VT GY YMLKL Sbjct: 724 -------------------TDQNWIFDPKSPGKTRIFDGQTGANFDQAVTAGYAYMLKLI 764 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 HLVD K+HARSTG Y+LVTQQP+ G+++ GGQR GEME WALEA+GA+Y LQEM+T+KSD Sbjct: 765 HLVDHKIHARSTGPYALVTQQPVRGRSRAGGQRLGEMEFWALEAFGASYNLQEMMTIKSD 824 Query: 1297 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 D+ GRT+++ +I++ ++ PESF V + E+RSLG+N + Sbjct: 825 DILGRTQVFDSILNS-KPIQNSHPESFRVFINELRSLGVNFQ 865 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 75/124 (60%) Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 I+ + A + Y L Y RSNQ TCI Q P V LGE V++GD L D Sbjct: 35 HKKNIIPLNVDKARDVYRAHENSYFLDHYIRSNQATCITQRPSVKLGEWVQKGDFLCDTT 94 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 ++ GELALG+N+ VA+MPW+GYNFED+ILV+E ++ D +T++H+++ +T GP Sbjct: 95 ASSAGELALGKNILVAYMPWHGYNFEDAILVNETLIIYDIYTSLHLEKFEIEIENTNWGP 154 Query: 848 EEIT 851 E I Sbjct: 155 EIIK 158 Score = 97.1 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 52/120 (43%) Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 ++ E + V + LD GI+ +G V GDI+V K+ P G TP EK Sbjct: 507 NKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRPIGPHNPTPLEK 566 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 L+ AI +K D K+++ P V G ++ +++ + D I ++ K Sbjct: 567 LVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLPSDVEYSGIGRVEFYLVDKRR 626 >UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 Tax=Coelomata RepID=RPA2_MOUSE Length = 1135 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 88/327 (26%), Positives = 133/327 (40%), Gaps = 76/327 (23%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D+ G K + + + + R GDK A RHG KG++S++ P EDMP+ E+G DI+ N Sbjct: 857 NDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFN 916 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ G +A G Sbjct: 917 PHGFPSRMTIGMLIESMAGKSAALHG-------------------------------LCH 945 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + F E + + E+LK G RLY G +G Sbjct: 946 DATPFIFSE-------------------ENSALEYFGEMLKAAGYNFYGTERLYSGISGM 986 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + E + +G +Y +L H+V DK R+TG+ VT QPLGG+ GG RFGEME AL Sbjct: 987 ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALL 1046 Query: 1280 AYGAAYTLQEMLTVKSD--------------------------DVNGRTKMYKNIVDGNH 1313 A+G ++ L + L SD + R + Sbjct: 1047 AHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDT 1106 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELE 1340 +P F + E+ ++ I ++L+ Sbjct: 1107 IDTVSVPYVFRYFVAELAAMNIKVKLD 1133 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 89/493 (18%), Positives = 179/493 (36%), Gaps = 53/493 (10%) Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVRVE-----RAVK 476 + +KL + G+ D+ D L N+ + S G++ + + LV ++ RA K Sbjct: 347 CLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQK 406 Query: 477 ERLSLGDLDTLMPQD------------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 +S+ + + + + S F S L D+ N L + Sbjct: 407 ANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLEDSGLCVVADKLNFLRYL 466 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ-TNE 583 +H R + G + VR + P +G +CP+ TP+G GL+N L+ + + Sbjct: 467 SHFR---CVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTK 523 Query: 584 YG-FLETPYRKVTDGVVTDEIHYLSAIEE------GNYVIAQANSNLDEEGHFVEDLVTC 636 +G P GV + + ++ + +L E + L Sbjct: 524 FGDTASIPALLCGLGVTGADTAPCRPYSDCYPVLLDGVMVGWVDKDLAPE--VADTLRRF 581 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 + E + +V + ++ + S+ L F R + + R+ + Sbjct: 582 KVLREKRIPPWMEVALIPMTGKP--SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQ 639 Query: 697 KPLVGTGMERAVAVDSG-------VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 + E V + ++ + + D ++ + + +M G+ + Sbjct: 640 LFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM--GKQTMG 697 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 LT RS+ Q P L P + D D +G N VA + + G Sbjct: 698 FPLLTYQNRSDNKLYRLQTPQSPLVRP-----CMYDFYDMDN--YPIGTNAIVAVISYTG 750 Query: 810 YNFEDSILVSERVVQEDRFT-TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 Y+ ED+++V++ + +++ E +S K G + + + + KLD+ Sbjct: 751 YDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDD 810 Query: 869 GIVYIGAEVTGGD 881 G+ IGA++ GD Sbjct: 811 GLPSIGAKLEYGD 823 >UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 Tax=Amniota RepID=RPA2_HUMAN Length = 1135 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 88/327 (26%), Positives = 131/327 (40%), Gaps = 76/327 (23%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D G K V + + V R GDK A RHG KG++S++ P EDMP+ E+G DI+ N Sbjct: 857 NDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFN 916 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ G +A G Sbjct: 917 PHGFPSRMTIGMLIESMAGKSAALHG-------------------------------LCH 945 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + F E + + E+LK G RLY G +G Sbjct: 946 DATPFIFSE-------------------ENSALEYFGEMLKAAGYNFYGTERLYSGISGL 986 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + E + +G +Y +L H+V DK R+TG+ VT QP+GG+ GG RFGEME AL Sbjct: 987 ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 1046 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKN--------------------------IVDGNH 1313 A+G ++ L + L SD + + Sbjct: 1047 AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDT 1106 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELE 1340 +P F + E+ ++ I ++L+ Sbjct: 1107 IDTVSVPYVFRYFVAELAAMNIKVKLD 1133 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 85/495 (17%), Positives = 175/495 (35%), Gaps = 55/495 (11%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVRVERAVKERLS 480 + + +KL + G+ D+ D L N+ + + G++ + + LV ++ A ++ Sbjct: 346 LCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQ 405 Query: 481 LGD---------------LDTLMPQDMI--NAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 +D P + + S S L D+ N + Sbjct: 406 KTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRY 465 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++H R + G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 466 LSHFR---CVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVT 522 Query: 584 YGFLETPYRKVTDGVVTDEIH-YLSAIEEGNYVIAQANSNL-----DEEGHFVEDLVTCR 637 + + I Y + + D + L + Sbjct: 523 QFVYTASIPALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFK 582 Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP------ 691 E + +V + ++ + S+ L F R + + ++ + Sbjct: 583 VLREKRIPPWMEVVLIPMTGKP--SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQI 640 Query: 692 ----TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 + D+ G + + S ++ +A + + D ++ + + +M G+ Sbjct: 641 FMNVAIFEDEVFAGVTTHQELFPHSLLSVIAN---FIPFSDHNQSPRNMYQCQM--GKQT 695 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 + LT RS+ Q P L P + D D +G N VA + + Sbjct: 696 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPS-----MYDYYDMDN--YPIGTNAIVAVISY 748 Query: 808 NGYNFEDSILVSERVVQEDRFT-TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 GY+ ED+++V++ + +++ E +S K G + I L KLD Sbjct: 749 TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLD 808 Query: 867 ESGIVYIGAEVTGGD 881 + G+ +IGA++ GD Sbjct: 809 DDGLPFIGAKLQYGD 823 >UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26 Tax=Eukaryota RepID=RPB2_DROME Length = 1176 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 88/415 (21%), Positives = 151/415 (36%), Gaps = 73/415 (17%) Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 + Q + +K Q + + ++ + D + + + L Sbjct: 817 KDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLP 876 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 D+E + ++ +++ + + +T + K K+ + R Q Sbjct: 877 ENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSE----GYKFCKIRVRSVRIPQ 932 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK A RHG KG EDM + G DI++NP +PSRM IG ++E G Sbjct: 933 IGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGK-- 990 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 LG++ + D + F+ Sbjct: 991 -----------------------------LGSNKGEIGDATPFN---------------- 1005 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 D +I L+ G +Y+G TG + V +G Y +L H+VDD Sbjct: 1006 ------DAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDD 1059 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+H+R+ G ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD Sbjct: 1060 KIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVH 1119 Query: 1302 TK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 K + + +P + +L +E+ S+ I L Sbjct: 1120 ICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLM 1174 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 128/644 (19%), Positives = 244/644 (37%), Gaps = 116/644 (18%) Query: 397 LSAVGRMKFNRSLLREE-------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 ++ R+K+ + +L++E + + ++ +L+ G+ E+DD DH G Sbjct: 331 VTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYG 390 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVK-------ERLSLGDLDTLMPQDMINAKPISAAV 502 N+R+ G + FR + + V+ +R +L+ + ++I + Sbjct: 391 NKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLA 450 Query: 503 KEFFG--------SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 +G + +SQ +++ S ++H RR+++ + R+ + R +H T Sbjct: 451 TGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNS----PIGRDGKLAKPRQLHNTL 506 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G +CP ETPEG +GL+ +L++ A + + + +L N Sbjct: 507 WGMLCPAETPEGAAVGLVKNLALMAYIS------------VGSQPSPILEFLEEWSMENL 554 Query: 615 VIAQANSNLDEEGHFVED--LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 ++ D FV + R + R MD+ +V S+I + Sbjct: 555 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEV-----SMIRDIR 609 Query: 673 HDDANRALMGANMQRQAVPTLRADKP---LVGTGMERAVAVDSG--VTAVAKRGGVVQYV 727 D R + R P L + L T +E D V GVV+Y+ Sbjct: 610 -DREIRIY--TDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYI 666 Query: 728 DASR-----IVIKVNEDEMYPGEAGIDIY---------------NLTKYTRSNQ---NTC 764 D I + + + A Y ++ + NQ NT Sbjct: 667 DTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTY 726 Query: 765 INQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMP 806 + M ++G + V D + EL G N VA + Sbjct: 727 QSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILC 786 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE------A 860 + GYN EDS++++ V+ F ++ + S + ++G +E + P+ G A Sbjct: 787 YTGYNQEDSVILNASAVERGFFRSVFYRSYK-DSENKRVGDQEENFEKPHRGTCQGMRNA 845 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVT--PKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 KLD+ GI+ G V+G D+++GK P+ + +L K +D+S Sbjct: 846 HYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDS---------NTKRFSKRDAST 896 Query: 919 RVPNGVSGTVIDVQV-FTRDGVEKDK---RALEIEEMQLKQAKK 958 + N +G V V + +G + K R++ I ++ K A + Sbjct: 897 FLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASR 940 Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 110/319 (34%), Gaps = 79/319 (24%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPE------GQYGLEAAFRSVFPIQSYSGNSELQYV 71 D L+ QLDSF +FI+ + L+A + L++ Sbjct: 31 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFE 90 Query: 72 SYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 L +P E ++R +TYSAPL V + + + + Q+ Sbjct: 91 QIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVD---ITKTKNVEGLDPVETQHQK 147 Query: 122 VYMGEIPLM-----------TDN-------------GTFVINGTERVIVSQLHRSPGVFF 157 ++G+IP+M TD G F+ING+E+V+++Q + + Sbjct: 148 TFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 207 Query: 158 DSDKGKTHSSGKVLYNARIIP-----------------YRGSWLDFEFDPKDNLFVRIDR 200 + GK + I RGS K + RI Sbjct: 208 VF----SMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQ----NIKKSAIGQRIIA 259 Query: 201 -----RRKLPATIILRALNY-TTEQILDL----FFEKVIFEIRDNKLQMELVPERLRGET 250 ++++P I+ RAL + IL+ F + + E+ L V + + Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQE-QNVA 318 Query: 251 ASFDIEANGKVYVEKGRRI 269 +F + V K +RI Sbjct: 319 LNFIGARGARPGVTKDKRI 337 >UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=B3L0J5_PLAKH Length = 1371 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 128/312 (41%), Gaps = 70/312 (22%) Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 K KV + R Q GDK A RHG KG I EDMP+ +GT DI++NP V Sbjct: 1109 SRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSDGTFPDIIMNPHAV 1168 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG ++E G A Sbjct: 1169 PSRMTIGHLVECLAGKVAA----------------------------------------- 1187 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + G ATP F EI + L G LY+G G+ + Sbjct: 1188 ------------IEGGEGDATP-FSKITVQEISQRLHNLGYEKYGNDVLYNGHNGKMLKS 1234 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G Y +L H+V+DK+HARS G +++T+QP G+++ GG RFGEME + ++G+ Sbjct: 1235 KIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGS 1294 Query: 1284 AYTLQEMLTVKSD----------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 A L+E L +SD D+N + + +P + +L Sbjct: 1295 AKMLKERLFEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYIPYACKLLF 1354 Query: 1328 KEIRSLGINIEL 1339 +E+ ++ I +L Sbjct: 1355 QELMTMAIYPKL 1366 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 109/573 (19%), Positives = 211/573 (36%), Gaps = 100/573 (17%) Query: 398 SAVGRMKFNRSLLREEIEGSG-------ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN 450 S R+ + + LLR+E+ I ++ +L+ G+ + DD DH G Sbjct: 389 SREKRILYAKELLRKEVLPHMGTGPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGK 448 Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM---------INAKPISAA 501 +R+ G + + F ++ + VK L +D P D+ I Sbjct: 449 KRLDIAGPLMASSFSTYFRKMAKDVKRVLQRQ-IDNNKPFDVAGAVRSCSQITQGMQYQL 507 Query: 502 VKEFFG--------SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 +G + ++Q +++ S ++H RR++ L RE + R +H T Sbjct: 508 ATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNT----PLGREGKMAKPRQLHNT 563 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN 613 H+G +CP ETPEG ++GL+ +LS+ + G + + + + Sbjct: 564 HWGMICPFETPEGQSVGLVKNLSLMCDIS-VGTSTNNIFEFLLEWGLESLDEVPPQLMKE 622 Query: 614 YVIAQANSN----LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 V N ++ + +E L R + + S + DV+ + Sbjct: 623 KVKLFLNGKWVGCFNQIDNLIETLYELRRRCD---ISPEASIVRDVN-------SKEIKI 672 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV----DSGVTAVAKRGGVVQ 725 F + A R L ++ + L T E + ++ + G+++ Sbjct: 673 FTDSGRAMRPLYVVKN-------VKGENKLKLTK-EHVKNMMAYPETYNWDYLIQEGIIE 724 Query: 726 YVDASRIV---IKVNEDEMYPGEAGIDIY---------------NLTKYTRSNQ---NTC 764 Y+D I + D++ G + Y ++ ++ NQ NT Sbjct: 725 YIDCEEEETTMISMFIDDLKTGTGYHNNYTHCEIHPSLILGVCASIIPFSDHNQSPRNTY 784 Query: 765 INQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMP 806 + M ++G V ++ D + EL G N VA M Sbjct: 785 QSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQRPLVCTKVMEYLRFRELPAGINAIVAIMC 844 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD-----TKLGPEEITADIPNVGEAA 861 + GYN EDS+++++ + F ++ + + + + + N+ Sbjct: 845 YTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSIRYVKNLKRGD 904 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 +KLD G++ G V G DI++GKV+P E + Sbjct: 905 YTKLDNDGLIAPGIRVLGDDIIIGKVSPNIEDE 937 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 56/172 (32%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-----------SYSGN--SELQYVSY 73 L++ Q++S+ FIE Y ++ ++ N L++ Sbjct: 90 LVNQQIESYNDFIE------YRMQEIIDEHPALEIRPQAQYRSEGDEQKNVMYALKFGQL 143 Query: 74 RLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGT---VKDIKEQ 120 L P +D QE ++R +TYS+ + + + Y + G+ + Sbjct: 144 SLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTYVVDESSGSQILKDKFIYE 203 Query: 121 EVYMGEIPLMTDN------------------------GTFVINGTERVIVSQ 148 + +G IPLM + G F++NG E+V+V+Q Sbjct: 204 RINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGGEKVLVAQ 255 >UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi RepID=Q2TAM4_HUMAN Length = 952 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 88/327 (26%), Positives = 131/327 (40%), Gaps = 76/327 (23%) Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D G K V + + V R GDK A RHG KG++S++ P EDMP+ E+G DI+ N Sbjct: 674 NDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFN 733 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ G +A G Sbjct: 734 PHGFPSRMTIGMLIESMAGKSAALHG-------------------------------LCH 762 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + F E + + E+LK G RLY G +G Sbjct: 763 DATPFIFSE-------------------ENSALEYFGEMLKAAGYNFYGTERLYSGISGL 803 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + E + +G +Y +L H+V DK R+TG+ VT QP+GG+ GG RFGEME AL Sbjct: 804 ELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALL 863 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKN--------------------------IVDGNH 1313 A+G ++ L + L SD + + Sbjct: 864 AHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDT 923 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELE 1340 +P F + E+ ++ I ++L+ Sbjct: 924 IDTVSVPYVFRYFVAELAAMNIKVKLD 950 Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 10/169 (5%) Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + ++ + + D ++ + + +M G+ + LT RS+ Q P L Sbjct: 481 HSLLSVIANFIPFSDHNQSPRNMYQCQM--GKQTMGFPLLTYQDRSDNKLYRLQTPQSPL 538 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT-TIH 832 P + D D +G N VA + + GY+ ED+++V++ + +++ Sbjct: 539 VRPS-----MYDYYDMDN--YPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVY 591 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 E +S K G + I L KLD+ G+ +IGA++ GD Sbjct: 592 KSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGD 640 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 16/78 (20%) Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTL--------------R 694 + ++ ++SV A+ IPF +H+ + R + M +Q + P L Sbjct: 474 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQT 533 Query: 695 ADKPLVGTGMERAVAVDS 712 PLV M +D+ Sbjct: 534 PQSPLVRPSMYDYYDMDN 551 >UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit RPA2 n=10 Tax=Ascomycota RepID=RPA2_SCHPO Length = 1174 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 89/389 (22%), Positives = 141/389 (36%), Gaps = 98/389 (25%) Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 ++L D E + + E H E + R + G+D+ + + V L + Sbjct: 836 IKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLL--GNDVGDSECQQIHVKLRIT 893 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R GDK + RHG KG+ S+ P DMP+ E+G DI++NP PSRM IG +E+ Sbjct: 894 RSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLA 953 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G A G ++ E ++ Sbjct: 954 GKAGACHGLAQDSTPFIYSEQQTAADY--------------------------------- 980 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 E L G +Y G TG++ + + +G +Y +L H Sbjct: 981 -----------------FGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRH 1023 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 +V DK R+TG +T+QP+ G+ + GG RFGEME A+ +G ++ +Q+ L SD Sbjct: 1024 MVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDY 1083 Query: 1298 VNG---------------------------RTKMY-------------------KNIVDG 1311 R + K V G Sbjct: 1084 AQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKPALGLEDTSDIWQDGSGKKFVGG 1143 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + +P FN L E+ ++ I + LE Sbjct: 1144 TNTTLIALPSVFNYLTAELTAMNIKMMLE 1172 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 89/555 (16%), Positives = 181/555 (32%), Gaps = 90/555 (16%) Query: 392 EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 ED D+ VGR + +L E ++ +++KL + G+ D+ D ++ Sbjct: 319 EDLTDVE-VGRFLLQKVVLVHLREAKDKFR--LLLFMIRKLYALVAGECCADNPDSPQHQ 375 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKE------- 504 I G + + + +++ +++L + D + K ++ + Sbjct: 376 EILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGT 435 Query: 505 ----FFGSSQLSQ--------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 F + L ++ N ++H R + G E Sbjct: 436 KLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFR---MVHRGAFFAELKTTT 492 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG--FLETPYRKVTDGV----VT 600 VR + P +G +CP+ TP+G GL+N L+ + + + P ++ GV V Sbjct: 493 VRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVV 552 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDE------------------EGHFVEDLVTCRSKGES 642 ++ ++ L + G E E Sbjct: 553 GHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAK-VPLDLEI 611 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK---PL 699 + S A ++ ++H M ++ + K P Sbjct: 612 GYVPPS--HNGQYPGLYLFSNPARMVRPVKHISTGELDMLGPFEQVYMDIACFPKEIVPK 669 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 V T +E S ++ + + D ++ + + +M G L R+ Sbjct: 670 VSTHVE-----YSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRY--RT 722 Query: 760 NQNTC---INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 + Q P V L + D G N VA + + GY+ ED++ Sbjct: 723 DNKLYRLQTGQTPVVRPK--------LHNTYGLDH--YPNGTNAVVAVISYTGYDMEDAM 772 Query: 817 LVSERVVQEDR-FTTIHIQELACVSRDTKLGP------EEITADIPNVGEAALSKLDESG 869 ++++ + + T++ E +S+ + G P L KLD G Sbjct: 773 ILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPR--REWLQKLDADG 830 Query: 870 IVYIGAEVTGGDILV 884 + +IG ++ GD +V Sbjct: 831 LPFIGIKLEDGDPIV 845 >UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB1_LEPTE Length = 1142 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 123/268 (45%), Positives = 174/268 (64%), Gaps = 6/268 (2%) Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 K+ + + Q++I I+ A++E FG + LSQFMDQ NPLSEITHKRRIS++GP Sbjct: 871 KKLRNFKNALKNPIQNLITTNAINGALQELFGLNPLSQFMDQINPLSEITHKRRISSMGP 930 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GG+ R+ A +VR +HPTHYGR+CPIETPEG N GL+NS ++YA+ N YGFLETP+ KV Sbjct: 931 GGVNRDNASMDVRSIHPTHYGRICPIETPEGHNAGLVNSPTIYARINNYGFLETPFFKVN 990 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV------EDLVTCRSKGESSLFSRDQ 649 G + + YL+A +E + ++ + + E E V R + + Q Sbjct: 991 SGQIQAKAFYLNAQKEQKFKVSPPDLSCSELQFLPLGPTKIESEVPMRKDFKFQRMAATQ 1050 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 ++++ +S Q++SV SLIPFLEHDDANRALMG+NMQRQAVP L A++P+VGTG+E V Sbjct: 1051 IEFIGISPLQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLIAERPVVGTGLEGRVI 1110 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVN 737 DS K+ GV+ YV +++++ Sbjct: 1111 ADSSYIMQTKQSGVISYVSNEQVIVQTF 1138 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 27/225 (12%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--S 72 F + + L + L+ IQ SF + + GL+ + I++ + N +L + + Sbjct: 3 FSVKNKNLLIQNLVEIQQQSFNELLC------VGLKRQLLQLNFIENKTRNIKLIFHAKN 56 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y+ P +E ++ T+++ L + + I V +G +P MT Sbjct: 57 YKFILPEITPKEAVLKSKTFASALFIPV---------EYRAKNSIGLYWVLLGHLPFMTK 107 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV----------LYNARIIPYRGS 182 G F+ING RV+++Q+ RSPG+++ + + S +V ++ + IIP RG+ Sbjct: 108 RGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSHTSPVFYSDIIPNRGT 167 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK 227 WL E D K N+++R+ R K+P + L+AL Y I L + + Sbjct: 168 WLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSR 212 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 121/311 (38%), Gaps = 33/311 (10%) Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 RG +I+ +++ R + L+ L + + K + DY+ Sbjct: 165 RGTWLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSRKFLNCDYL--LN 222 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 + +N L + + Q ++ L D D P I++ L I Sbjct: 223 TDHPADSNSALKKIKVE-IEQQKVLKLAALEALD-DDDPDIAKQLD------------YI 268 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 + T E + FF+ YDLS +GR + N+ L +L++ DI Sbjct: 269 EK------TTTPEMGKDFLFQSFFNPASYDLSPIGRFQLNKKLNLSIPSDYTVLTEFDIY 322 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT 486 K+LI DDIDHL RRIRS GE+ E Q G+ R+++ + ++++ +L Sbjct: 323 FATKELIKRATTMSNSDDIDHLQTRRIRSCGELLEIQLGEGIERLQKTIIDKINNTNLKK 382 Query: 487 LMPQDMINAKPISAAV----KEFFGSSQLSQFMDQNNPLSEITHKRRIS---ALGPGGLT 539 + S+++ ++ + + S+F+ N P T RI+ L P G + Sbjct: 383 FAKHSSTYKRGTSSSIYRQDRQVINTDKNSKFLKNNLP----TKFNRITLEPNLLPNGTS 438 Query: 540 RERAGFEVRDV 550 ++ V Sbjct: 439 FIHKNNKLNQV 449 >UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=281 Tax=cellular organisms RepID=RPC2_HUMAN Length = 1133 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 136/335 (40%), Gaps = 66/335 (19%) Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 QY ++ ++ ++ K+ + L +K+ L RR + GDK + RHG KGV Sbjct: 849 PQYKDVPITYKGATDSYIEKVMISSNAEDAFL--IKMLLRQTRRPEIGDKFSSRHGQKGV 906 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 I P EDMP+ ++G DI++NP G ++ K+ Sbjct: 907 CGLIVPQEDMPFCDSGICPDIIMNPH----------------GFPSRMTVGKL------- 943 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 E++ + G F G+K ++ Sbjct: 944 -------------------------------IELLAGKAGVLDGRFHYGTAFGGSKVKDV 972 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 E L G+ + G TGE E + G +Y KL H+V DKMHAR+ G +++T Sbjct: 973 CEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLT 1032 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KMY 1305 +QP G+++ GG R GEME L YGA+ L E L + SD DV G+ Sbjct: 1033 RQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWC 1092 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 H +P + +L +E++S+ I L+ Sbjct: 1093 HYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 123/697 (17%), Positives = 239/697 (34%), Gaps = 112/697 (16%) Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA--N 314 + ++ VE R+ + K + + + E +I Sbjct: 185 SKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMG 244 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 +E +++ + + + F GP + E + ++ AL I +R Sbjct: 245 VESDQEIVQMIG--TEEHVMAAF------GPSLEEC-QKAQIFTQMQALKYIGNKVRRQR 295 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 ++ E L+ V +FN +K VM + + Sbjct: 296 MWGGGPKKTKIEEARELLASTILTHVPVKEFNFR------------AKCIYTAVMVRRVI 343 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE---------RLSLGDLD 485 + G +VDD D+ GN+R+ G++ F + +K+ R + D+ Sbjct: 344 LAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVV 403 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRERAG 544 M QD I ++A G+ L +F MD+ ++ ISALG +TR + Sbjct: 404 KHMRQDQITNGMVNAIST---GNWSLKRFKMDRQGVTQVLSRLSYISALG--MMTRISSQ 458 Query: 545 FE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 FE R + P+ +G +CP +TPEG GL+ +L++ + P K+ Sbjct: 459 FEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT-DMEDGPIVKLASN 517 Query: 598 VVTDEIHYLSAIEEGNY---VIAQANSN----LDEEGHFVEDLVTCRSKG---ESSLFSR 647 + ++++ L EE +Y + N N + + V R G E S Sbjct: 518 LGVEDVNLL-CGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSIST 576 Query: 648 DQVDYMDVSTQQVVSVGASLI-PFLEHDDANRALMGANMQRQA----------------- 689 + D + S G L P++ A+ +M+ A Sbjct: 577 NLTDR----CVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEY 632 Query: 690 VPTLRADKPLVGTGMERAVAVDSGV------TAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + + + E + D+ T + G++ Y ++ + M Sbjct: 633 LDVNEENDCNIAL-YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-- 689 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 G+ + + R + + P +P+ + + + +L GQN VA Sbjct: 690 GKQAMGTIGYNQRNRIDTLMYLLAYPQ----KPMVKTKTI---ELIEFEKLPAGQNATVA 742 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTI-------HIQELACVSRDTKLGP--EEITADI 854 M ++GY+ ED++++++ + + ++ + D +GP + T Sbjct: 743 VMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRK- 801 Query: 855 PNVGEAALSK--LDESGIVYIGAEVTGGDILVGKVTP 889 LD GI G +V +LV K P Sbjct: 802 -----PIWRHEILDADGICSPGEKVENKQVLVNKSMP 833 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 59/399 (14%), Positives = 131/399 (32%), Gaps = 72/399 (18%) Query: 24 VPYLLSIQ------LDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 +P L ++ +DSF FI + + S L+Y++ +G Sbjct: 30 LPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTS-----DADPMWYLKYLNIYVGL 84 Query: 78 PVF----------DVQECQIRGVTYSAPLRVKL-----------------RLVIYEREAP 110 P EC++R +TYSAP+ V + R+ I R + Sbjct: 85 PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSN 144 Query: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 + + E PL G F++ G E+VI+ Q S ++ + K Sbjct: 145 CVLTGKTPAEFAKLNECPL-DPGGYFIVKGVEKVILIQEQLS------KNRIIVEADRKG 197 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK----------LPATIILRALNY-TTEQ 219 A + + K + + + R +P II +A+ + ++ Sbjct: 198 AVGASVTSS-------THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQE 250 Query: 220 ILDLFFEKV----IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 I+ + + F + Q + +++ + +++ ++ R Sbjct: 251 IVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEAR 310 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL---AKLSQSGHKR 332 +L + L VPV+ + ++ + ++ +L +G + Sbjct: 311 ELLASTI-LTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAG-QL 368 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + LF + + + + +A ++ + MR Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMR 407 >UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota RepID=C8VU19_EMENI Length = 1225 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 89/310 (28%), Positives = 130/310 (41%), Gaps = 66/310 (21%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 +I+KV RR + GDK + RHG KGV I DMP+ + G DI++NP G P Sbjct: 963 NENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFP 1022 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM +G++LE G A G Q + F Sbjct: 1023 SRMTVGKMLELVAGKAGVLSG-------------------------------QHGYGTCF 1051 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 S V ++ + L G+ L G TGE Sbjct: 1052 SGTPVEQMTQTLID-----------------------KGFSYGGKDYLTSGITGEALPFY 1088 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 V G +Y KL H+V DKMH+R+ G + +T+QP G+++ GG R GEME L AYG + Sbjct: 1089 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1148 Query: 1285 YTLQEMLTVKSD----DVN------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 L E L + SD DV G + ++ +P + +L++E+ S+ Sbjct: 1149 QLLLERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQELMSMN 1208 Query: 1335 IN--IELEDE 1342 + ++LEDE Sbjct: 1209 VTARLKLEDE 1218 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 114/715 (15%), Positives = 251/715 (35%), Gaps = 91/715 (12%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + + I + ++ LV E+L + + ++ + E+ Sbjct: 246 LDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIV------QASVTSSSNERKSKSY 299 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 I + + + V + + E +I M + D L +G ++ D Sbjct: 300 IILKKDRL---YVKHNVLSEDIPIVILLKAMGIHTDKEMMLLVAGVDKV-----YQEDFA 351 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 E ++V + AL I ++ S R + Sbjct: 352 INFEEAIKV-GVFTQQQALDWIGSRIK-------------INRKQMSYRRTHVQEAVEAI 397 Query: 405 FNRSLLREEIEGSGILSKDDIID-VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 + + E++ K + + ++++ +N VDD D+LGN+R+ G++ Sbjct: 398 ASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLLALL 457 Query: 464 FRVGLVRVERAVKERL-----SLGDLDTLMPQDMI--NAKPISAAVKEFF--GSSQLSQF 514 F + +K + ++ +I ++ I+ + G+ L +F Sbjct: 458 FEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWSLKRF 517 Query: 515 -MDQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEG 566 M++ ++ I+ALG +TR + FE R + P+ +G +C +TPEG Sbjct: 518 RMERAGVTHVLSRLSYIAALG--MMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEG 575 Query: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE---GNYVIAQANSNL 623 GL+ +L++ E P + + + ++I + E G+Y I+ + + Sbjct: 576 EACGLVKNLALMTHITTNDE-EGPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGTPM 634 Query: 624 ---DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 +F+ R G S F +++ + G P + +D + Sbjct: 635 ALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIIVEDGK-SR 693 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV-----------------------TAV 717 + + R+ + G+ V V+ T + Sbjct: 694 VKKHHLRKLRDGTMQFDDFLAQGLVEYVDVNEENDSLIAIYEKDITDTTTHMEIEPFTIL 753 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 G++ Y ++ + M G+ I ++ R + + P +P+ Sbjct: 754 GAVAGLIPYPHHNQSPRNTYQCAM--GKQAIGAIASNQFLRIDSILYLMVYPQ----KPM 807 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + + T +L GQN VA M ++GY+ ED++++++ V ++ Sbjct: 808 VKSRTI---ELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYV 864 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSK---LDESGIVYIGAEVTGGDILVGKVTP 889 + G ++I + +A + K L+ G+ +G +V G++ + K TP Sbjct: 865 TNMKSYSNGTKDILSPPTYENDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTP 919 Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 64/370 (17%), Positives = 123/370 (33%), Gaps = 85/370 (22%) Query: 24 VPYLLSIQ------LDSFQKFIEQDPEGQYGLEAAFRSVFPI-QSYSGNSELQYVSYRLG 76 +P L ++ +DS+ +E L+ S I N +++ LG Sbjct: 107 LPAFLKVKGLVKQHIDSYNYLVEVQ------LKKIVESSNTIRSDVDHNFYIKFTDIYLG 160 Query: 77 EPVF----------------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 P EC++R TY+AP++V + + ++ + Sbjct: 161 FPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYI--------RGRQRVRRK 212 Query: 121 EVYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVF 156 V +G +P+M G F++NGTE+VI+ Q S Sbjct: 213 GVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 272 Query: 157 FDSDKGK--------THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPAT 207 K T SS + + II KD L+V+ + +P Sbjct: 273 IVETDPKKEIVQASVTSSSNERKSKSYII-----------LKKDRLYVKHNVLSEDIPIV 321 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDN--KLQMELVPERLRGETASFDIEANGKVYVEK 265 I+L+A+ T++ + L V +++ E + + + + D + K Sbjct: 322 ILLKAMGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWIGSRIKINRK 381 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 H+++ + +I +E K + + A + L+ Sbjct: 382 QMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDA--ALVDDR 439 Query: 326 SQSGHKRIET 335 G+KR+E Sbjct: 440 DYLGNKRLEL 449 >UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=B7XI25_ENTBH Length = 1107 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 105/436 (24%), Positives = 180/436 (41%), Gaps = 59/436 (13%) Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 ++P G++ V V + G + + + K + +E +I Sbjct: 719 KIPAGINAMV---AVMSYSGYDIEDAIIV--------NKDSIERGFMRVEVYKTIKIEFE 767 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL--EAKRRKI 1036 G E +++ +E+G + + +++ +LK K + Sbjct: 768 RFTNGKTEEIYIVNGKEQIIEVGTHVMDGDILITKVSPIDKKLKTVKYKGHPGYIDTIIL 827 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 ++GDD KI+K+ + R ++ GDK + RHG KGV+ I P D+P++E G DI Sbjct: 828 SKGDDD-----KILKIKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEYGVCPDI 882 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP G PSRM +G+ILE IG K+ + + Sbjct: 883 IMNPHGFPSRMTVGKILEL--------IGSKVTCLTGEYT-------------------- 914 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 D + F + + + + + + ++L SG+ G Sbjct: 915 ---DATPFENNTADNDLKTIFNTTNQEPLHKEHRQTELLCQILIDHGYSYSGKDVFTSGI 971 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TGEQFE + G ++ +L H+V DK+H RS G +++T+QP G+++ GG R GEME Sbjct: 972 TGEQFEAYIFFGPIFYQRLKHMVADKIHCRSRGPRAVLTRQPTEGRSKDGGLRLGEMERD 1031 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME--------PGMPESFNVLLK 1328 L YGA L E L SD+ + I+ + MP + +L + Sbjct: 1032 CLIGYGANSLLNERLMHCSDEFDAFICETCGIICYKERCYWCSKKPIIVKMPYACKLLFQ 1091 Query: 1329 EIRSLGI--NIELEDE 1342 E+ ++ I I LE E Sbjct: 1092 EMMAMNILPKIILEKE 1107 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 116/722 (16%), Positives = 254/722 (35%), Gaps = 98/722 (13%) Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 ++K+ M + L I NG ++ KG Q K+ + +IE+ + Sbjct: 130 NSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQSKNRI-IIEMGKNGLY 188 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 + + ++ +I N + + + + L T L+ I + Sbjct: 189 TSMTSSSIKHKNKTNVIY-KNDKFYIQNTIFIEDVPI--VLVLKTLGLNTDEEIVSYIGK 245 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + + E+Y E + + ++ K ++ ++ Sbjct: 246 EGVELMELSFGEVYEKDIYTETDALIELSKFIKLKSDDNKEIKVKSILAEKLFPNIKIDD 305 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV-- 471 + + + +++KLI + + DD D+LGN+R G++ F + Sbjct: 306 DLKNKGIC---LCLMIRKLILAKQNLLKPDDKDYLGNKRFELAGQLLSILFEDTFKKFNF 362 Query: 472 ------ERAVKERLSLGDLDTLMPQDMINAKPISAAVKE-FFGSSQLSQF-MDQNNPLSE 523 ++ + +R+ + D L ++ + + G+ L +F M+++ Sbjct: 363 ELKKSIDKILSKRIRTNEFDALTFFNLQTGSITTTLSRAISSGNWNLKRFKMERSGVTHV 422 Query: 524 ITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 +T I+ALG +T+ + FE R +HP+ +G CP +TPEG + GL+ +L+ Sbjct: 423 LTRYSYITALG--MMTKINSHFEKTRKVSGPRSLHPSSWGMFCPADTPEGESCGLVKNLA 480 Query: 577 VYAQTNE-------YGFLET------------------PYRKVTDGV---VTDEIHYL-- 606 + + + L+T + +G +T I YL Sbjct: 481 LLTEISTESDSDIIKNILQTLGVIKLKFCQESEFYAKNKFMVFINGELFGLTSNIEYLCC 540 Query: 607 --SAIEEGNYVIAQANSNLDE----------EGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 I + + ++ G L+ + + Q + + Sbjct: 541 AIRKIRREGKINKFVSIFHNKLENAIYISTDNGRICRPLIIIKKNSNFFTNYQFQCNKIK 600 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 + + + LI +++ ++ N L+ + + + L + T +E +A S + Sbjct: 601 YKSFNDL-LLEGLIEYVDVNEENDCLIA--LHKSNINNLNIEN---YTHLE--IADYSIL 652 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 + +A G++ + ++ + M G N+ K + + Sbjct: 653 SLIA---GLIPFPHHNQSPRNTYQCAMGKQAIGHIGTNIKK------RFDLLMLQLNYTQ 703 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 P+ +L ++ G N VA M ++GY+ ED+I+V++ ++ + Sbjct: 704 RPLSCSKILDIN---KYNKIPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRVEVYK 760 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 + G T +I V I+ +G V GDIL+ KV+P + Sbjct: 761 TIKIEFERFTNGK---TEEIYIVNGKEQ-------IIEVGTHVMDGDILITKVSPIDKKL 810 Query: 895 LT 896 T Sbjct: 811 KT 812 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 64/405 (15%), Positives = 126/405 (31%), Gaps = 101/405 (24%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV------ 79 L+ ++SF FIE++ + S N L+Y++ R+ +P Sbjct: 16 NLVRQHIESFNYFIEKEIKEIVQANDIIDS-----DIDRNFYLRYLNIRVEKPTMIENMV 70 Query: 80 ---FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM--TDNG 134 QEC+IR +TY+ + V + + + I ++ + MG++P+M + Sbjct: 71 EQIIYPQECRIRDITYAGNIYVDIEYI--------KNKEVIIKKNISMGKMPIMIRSSKC 122 Query: 135 T----------------------------------FVINGTERVIVSQLHRSP------- 153 F+I G E+VI Q +S Sbjct: 123 HLTTHMLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQSKNRIIIEM 182 Query: 154 ---GVFFDSDKGKTHSSGKV--LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATI 208 G++ K +Y F + +F+ +P + Sbjct: 183 GKNGLYTSMTSSSIKHKNKTNVIYKND---------KFYIQ--NTIFIE-----DVPIVL 226 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 +L+ L T++ + + K E+ + L V E+ IE + + ++ Sbjct: 227 VLKTLGLNTDEEIVSYIGKEGVELME--LSFGEVYEKDIYTETDALIELSKFIKLKSDDN 284 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 + L + I++ + + I +LI A L D L Sbjct: 285 KEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMI----RKLILAKQNLLKPDDKDYLGNK 340 Query: 329 GHK----RIETLFTNDLDHGPY-----ISETLRVDPTNDRLSALV 364 + + LF + + I + L + AL Sbjct: 341 RFELAGQLLSILFEDTFKKFNFELKKSIDKILSKRIRTNEFDALT 385 >UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bacillariophyta RepID=B7FQD9_PHATR Length = 1147 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 112/501 (22%), Positives = 183/501 (36%), Gaps = 100/501 (19%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLR-------VPNGVSGTVIDVQVFT----R 936 TP P+ KL R + V +S+ PNG + V+ V +T Sbjct: 695 TPAHSLPYRPDNKLYR--LQTPQAPVVQTSIHGEYKMDEYPNGTNA-VVAVLSYTGFDME 751 Query: 937 DGVEKDKRALE---IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL--DK 991 D V +K ++E K L EE ++ A + + V+ +K+ Sbjct: 752 DSVILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSSGEDVRMKFSNKVKFDKVMYPS 811 Query: 992 LPRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L D ++G +T+ + + D E+++ + G+D G Sbjct: 812 LQDDGLPQVGDCMTEGDPLYCVVDSISGMDRAAKHKEREIAYVQSVRALGNDSGKGADNK 871 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V + L R GDK + RHG KGV+S + P EDMP+ E+G D+++NP PSRM I Sbjct: 872 VSITLRFPRNPVLGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRMTI 931 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 G ++E+ G + G+ NA E Sbjct: 932 GMMVESMAGKSGALHGNFQNATPFSFHESG------------------------------ 961 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 D E L+ G LY G +G + + +G Sbjct: 962 ------------------DKVSVDYFGEQLQAAGYNYYGSEPLYSGVSGCVMQADLYIGV 1003 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 +Y +L H+V DK R+TG + +T+QP+ G+ + GG R GEME +L ++G A+ LQ+ Sbjct: 1004 VYYQRLRHMVLDKYQVRATGPTNELTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLQD 1063 Query: 1290 MLTVKSDDVNGRTKMYKN------------------------------IVDGNHQMEPGM 1319 L SD +EP + Sbjct: 1064 RLLNCSDKHVAYACCRCGDLLMSATERSTVQTTGQSANEAINKPKIRLYCRSAGSVEPIV 1123 Query: 1320 -PESFNVLLKEIRSLGINIEL 1339 P + L+ E+ ++ + + L Sbjct: 1124 LPYVYRYLVNELAAMNVKMRL 1144 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 86/564 (15%), Positives = 181/564 (32%), Gaps = 82/564 (14%) Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 F L + +G R +L L + ++ +++KL G VD+ Sbjct: 284 FRRLSQKAETTSDVEIGHHIIRRFVLIHLPTYRDKL--ECLLLMLRKLYAFAAGDCGVDN 341 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD--MINAK------ 496 D L N+ I G + + +++ L + +AK Sbjct: 342 ADSLQNQEILLPGHLMCTFIKEKFEEFLSSLRLALLSDLRKDFARTSAKLTDAKYWGKMV 401 Query: 497 ---------PISAAVKEFFGSSQLSQ--------------FMDQNNPLSEITHKRRISAL 533 I V+ F + + ++ N L H R ++ Sbjct: 402 DRHAGKASGGIGKKVQHFLSTGNIVSTSGLDLMQVSGYTIVAERLNFLRYCAHFR---SV 458 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT-------NEYGF 586 G E VR + P +G +CP+ TP+G GL++ L++ ++ + G Sbjct: 459 HRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLALKSKVMAYPSRLDAKGM 518 Query: 587 LE----------TPY---RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 ++ TP + DG + +L +G V + S L + L Sbjct: 519 IDLDDLLLSLGVTPCGAGSRNGDGRIGSTHLHLPVSIDGRIVGGASPSVLKIIAAHLRKL 578 Query: 634 V-----TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 E L + + A L+ + + + +++ Sbjct: 579 KVDNPPVVPPTLEVGLVPPGN-PGAPYPGLYLFTCAARLVRPVLNRASGHTEFIGPLEQG 637 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 + D+ + G+ +D ++ + + D ++ + + +M G Sbjct: 638 YMDIACLDEDI-REGITTHQELDP-TNMLSLIANLTPFSDQNQSPRNMYQCQMGKQTMGT 695 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 ++L R + Q P + + G+ D E G N VA + + Sbjct: 696 PAHSLPY--RPDNKLYRLQTPQAPVVQTSIHGEYKMD-------EYPNGTNAVVAVLSYT 746 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL------GPEEITADIPN---VGE 859 G++ EDS+++++ V+ + + ++ E++ N + Sbjct: 747 GFDMEDSVILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSSGEDVRMKFSNKVKFDK 806 Query: 860 AALSKLDESGIVYIGAEVTGGDIL 883 L + G+ +G +T GD L Sbjct: 807 VMYPSLQDDGLPQVGDCMTEGDPL 830 >UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota RepID=Q5CSG7_CRYPV Length = 1281 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 129/323 (39%), Gaps = 62/323 (19%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 + V + L + R GDK A RHG KG++S + P E+MP+ E+G DI+ NP G PSRM Sbjct: 981 EKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSESGMVPDILFNPHGFPSRM 1040 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 IG +LE+ G AA G + +D + F+ Sbjct: 1041 TIGMLLESMGGKAACIHGAR------------------------------SLDATPFNIN 1070 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 L+ + + + L+ G LY+G TG + + + Sbjct: 1071 ISDDLSRSEEN--CEDDKAGEKTTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFM 1128 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L +YG + L Sbjct: 1129 GVIYYQRLRHMVADKAQVRATGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSIL 1188 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQME------------------------------P 1317 + L + SD+ ++ + Sbjct: 1189 VDRLLICSDEHRAYVCPKCGLIISSISKRAMAQSMSSSKLSNCIPPIAVCRVCKSPCRII 1248 Query: 1318 GMPESFNVLLKEIRSLGINIELE 1340 +P F L E+ ++ I I L Sbjct: 1249 TLPYIFRYLSNELAAMNIVIRLH 1271 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 38/213 (17%) Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 L GR + +L E + L + +I + KLI ++ + + ID + + S Sbjct: 333 LQEAGRFLIDNYVLVHLEEWNAKL--ECLILMFIKLIKLQLNEIREESIDSFAYQELLSP 390 Query: 457 GEMAENQFRVGLVRVERAVK-------------ERLSLGDLDTLMPQDMINAKPISAAVK 503 G + F+ + + ++ + + L+ +S + Sbjct: 391 GNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGVNLLRDTAYFKSVLSKNIS 450 Query: 504 -------EFFGSSQLSQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERA 543 F + + D+ N ++H R A+ G Sbjct: 451 MIPKRLQYFMATGNVKTTQLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMK 507 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 +VR + +G +CP+ TP+G GL+ LS Sbjct: 508 TTDVRKLTGETWGFLCPVHTPDGEPCGLLLHLS 540 Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 16/173 (9%) Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 T ++ ++ Y ++ + + +M + + L R++ P Sbjct: 753 STILSVTASLIPYAHHNQSPRNMYQCQML--KQTMGTPCLNHPYRTDNKMYRLLTP---- 806 Query: 774 GEPVERGDVLADG-PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 + ++ G S E G N VA M ++GY+ ED++++++ F Sbjct: 807 ----QEPTIITKGYSSFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMFHACV 862 Query: 833 IQELACVS---RDTKLGPEEITA--DIPNVGEAALSKLDESGIVYIGAEVTGG 880 + + TK E +I GE + +L G+ IG +T G Sbjct: 863 YKTKIISAAPPSATKKSDAESYFFHNIGPDGELVVKELSADGLPNIGQRLTKG 915 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 +M++ ++SV ASLIP+ H+ + R + M +Q + T + P Sbjct: 746 THMELHPSTILSVTASLIPYAHHNQSPRNMYQCQMLKQTMGTPCLNHPY 794 Score = 45.1 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 63/164 (38%) Query: 32 LDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE-----------LQYVSY-----RL 75 ++SF F+ GL+ +++ I SG + +Y+ ++ Sbjct: 17 IESFNTFL------SVGLKNIVKNLPKIYVDSGFIQDDCELNAAYSPAEYLRIGVTSAKI 70 Query: 76 GEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 G+P Q + ++YSAPL E E ++ + + +Y G Sbjct: 71 GKPIFGNSESSGTKLTPQHARNGHISYSAPL-------WLEFEGYNSSLDTVSKHSIYAG 123 Query: 126 EIPLMTDNGT------------------------FVINGTERVI 145 IP+M + + F+ING ERVI Sbjct: 124 TIPIMVKSSSCHLFGLGTKELVEKGEDPNEVGGYFIINGNERVI 167 >UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax=Plasmodium RepID=RPOB_PLAFA Length = 1024 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 112/569 (19%), Positives = 234/569 (41%), Gaps = 20/569 (3%) Query: 384 LFENLFFSEDRYDLSAVGRM-----KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 N ++ + + + N + + + I+++ L I+ Sbjct: 192 FIYNNIINKKILIYNYIKFIYSKYNNINNIISLKLFIIKLNKFNNIYINLLNILFSIKLN 251 Query: 439 KGEVDD--IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 D I+++ N++ S+ + + + L + + L++ ++N K Sbjct: 252 FSYYSDFYINNIYNKKFYSIIDNLLIKSKKYLKIFKYQL---LNINRNIYNNITLLLNNK 308 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 + E + L Q+ DQ N LSEI K +I+ + G ++ ++R++ G Sbjct: 309 KYINIILENININPLVQYSDQVNNLSEINQKFKINMITTGLNSKFILNNDLRELPRNILG 368 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 616 + I T EG GL+N L+ N Y+ + + L+ + Y I Sbjct: 369 YISLINTNEGLTCGLVNYLTTNIFLNLKYLFVIYYKHIFYNRY-NFKLLLNIFNKNFYNI 427 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 + N L + +F + + +K + + Q + + + ++S +LIPF+ ++D+ Sbjct: 428 SFNNIYLKKNINFNKTTILTINKNTFKICNITQ-NIIYIPFNYLLSFIENLIPFIHYNDS 486 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 R LM M Q VP + + + T + ++ + G+V YV +I+I+ Sbjct: 487 IRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISYQEGIVIYVSCIKIIIR- 545 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 +++ + IY L Y + NQN + P V +GE V G +LA + E +L Sbjct: 546 ---DLFNRQI---IYYLNNYKKINQNILLIYKPIVWVGEKVNIGQILAINSNLLNSEYSL 599 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 G N+ V + + GY +ED+I++S +++ + +T++H+ PE + ++ Sbjct: 600 GNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEISLNIINNIPEICSINLSK 659 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRAIFGEKASDVKD 915 + + LD+ GI+ G + +IL+ K+ ++ +FG K K+ Sbjct: 660 MYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFLFGSKLRIFKN 719 Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 + G VI +++ K ++ Sbjct: 720 KPIISTIHDIGRVIKIEILPNHLYNKTEK 748 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 136/294 (46%), Gaps = 40/294 (13%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 + ++Y+ +++ +Q GDK+ RHG+KG+IS I+ I D+PY N DI ++ + +P Sbjct: 750 NIYLKFRIYIGIQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIP 809 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SR+NIGQI E G+ + + + + I Y + ++ Sbjct: 810 SRINIGQIFEGIYGLNSLYLNTRYIISNNLNKNYYNNYNHIFNYYKYNYNNNFNINSKMS 869 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + + L + TG Sbjct: 870 YN----------------------------------------YNKYYLKNPFTGNMINNS 889 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + + +Y KL H++ DK R G YS +TQQP+ G + GGQRFGEMEVWALEA+GA+ Sbjct: 890 ICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEAFGAS 949 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 Y +E T KSDD+ R + + + + E+F ++LKE++SL INIE Sbjct: 950 YLFKEFFTYKSDDIKSRKILKNYLFNNYKIKNTFISETFKLILKELQSLAINIE 1003 >UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E7H8_TRIVA Length = 1177 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 88/361 (24%), Positives = 141/361 (39%), Gaps = 72/361 (19%) Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 +D + D + Q + ++ ++ R IT+ + L++ +V Sbjct: 869 QDVIIGKISPDSPTELDHRQYKDTSCVVRPMETGVVDLVLRTITKKN------LQLARVR 922 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 RR + GDK RHG KGV EDMP+ +G DI++NP +PSRM IG ++ Sbjct: 923 TRQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTRDGMVPDIIMNPHALPSRMTIGHLI 982 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 E LG A Sbjct: 983 ECLLGK---------------------------------------------------CTA 991 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 + + F G I + L+ G LY+GR+G++ + + G Y Sbjct: 992 IDPQNADEGDATPFCGVTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQ 1051 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 +L H+V DK HAR+ G SL+ +QP+ G+A+ GG RFGEME L A+G + +++ L Sbjct: 1052 RLKHMVGDKAHARALGRKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLE 1111 Query: 1294 KSD---------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 SD + T D + MP +F ++++E+ S+ I Sbjct: 1112 NSDRYFVPVCKTCGLIAIEKTDGTMECPACQDEGRLAKVEMPYAFKLVIQELMSMCIAPR 1171 Query: 1339 L 1339 L Sbjct: 1172 L 1172 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 154/806 (19%), Positives = 288/806 (35%), Gaps = 159/806 (19%) Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 F + + KV + + + + I +K VK ++ E + V L+ Sbjct: 187 YFIVNGSEKVIIGQEHMVINKPICYAQKSMVK-YDLATEIRSQPKVFGRLSQPFNLFLLA 245 Query: 312 AANMELSLDLLAKLSQSGHK-RIETLFTNDLDHGP-YISETLRVDPTNDRLSALVEIYRM 369 + + AKLS++ + LF G I + + DP + E + Sbjct: 246 PTAKQPERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDS------EFIDV 299 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVG------------RMKFNRSLLRE----- 412 +RP S+ E+ F +DR L VG R++ + LL E Sbjct: 300 LRP----------SIEESSSFLDDRACLDFVGKRCSIAAEEKSQRLRKAQRLLNEYLLPH 349 Query: 413 --EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E E I + LI++ G+ + DD DH N+R+ G + F + + Sbjct: 350 LGEKESDTTSKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEK 409 Query: 471 VERAV----KERLSLGDLDT-------LMPQDMINAKPISAAVKEFFGSSQLS------- 512 + +++ ++RL G++D L Q ++N K I++ ++ G+ S Sbjct: 410 MIKSLTQHLEKRLKDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGS 469 Query: 513 -----QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 Q +++ LS +++ RR + + R+ R +H TH+G +CP+ETPEG Sbjct: 470 KAGVSQMLNRLTFLSTLSNLRRTNT----PIGRDGKLTGPRHLHNTHWGYICPVETPEGQ 525 Query: 568 NIGLINSLSVYAQTNEYGFLET--PYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN----S 621 + GLI +L++ + LE ++ + T I ++ + + N Sbjct: 526 SCGLIKNLALMSIVTVNRELEAGDAITRILEDTGTIPIQQITPDQIKDSTKIFLNGAWYG 585 Query: 622 NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 + +E L++ R + DVS + I L+ Sbjct: 586 IHTDAYDLMETLLSERRSLKIP---------SDVSFVHHIRDQEIFIWTDGGRITRPVLI 636 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGV-TAVAKRGGVVQYVDASRIVIKV---- 736 +M ++++V D V + G+V+Y+D K+ Sbjct: 637 VNDMH---------------LTLKKSVLYDENTNWKVLRYKGMVEYLDIDEEETKLIALS 681 Query: 737 --NEDEMYPGEAGIDIY---------------NLTKYTRSNQ---NTCINQMPCVSLGEP 776 + +E G+ Y + + NQ NT M ++G Sbjct: 682 PADLEENRNSPTGVKTYTHCEIHPSLIFGVCGTIIPFPDHNQSPRNTYQCAMGKQAIGLY 741 Query: 777 VERGDVLADGPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILV 818 + D S + +L G N+ VA + GYN EDS+++ Sbjct: 742 TTNYMIRMDSSSHVLWYPQKPLVATRNMRYLNFNKLPAGINVTVAICCYTGYNQEDSLML 801 Query: 819 SERVVQEDRFTTIHIQEL-ACVSRDTKLGP-EEITADIPNVGEAAL----SKLDESGIVY 872 + + F + + D G E T P + SK+D G+ Sbjct: 802 NASAIDRGLFRSYFFRTYKETAEGDGTEGASEVFTFPDPQTVKGIKLHDSSKIDADGLAI 861 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV- 931 GA V+ D+++GK++P T+L KD+S V +G V V Sbjct: 862 PGAVVSAQDVIIGKISPDSPTELD-------------HRQYKDTSCVVRPMETGVVDLVL 908 Query: 932 QVFTRDGVEKDK-RALEIEEMQLKQA 956 + T+ ++ + R ++ ++ Sbjct: 909 RTITKKNLQLARVRTRQMRRPEIGDK 934 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 92/266 (34%), Gaps = 62/266 (23%) Query: 18 RPQVLDVPYLLSIQLDSFQKF----------------IEQDPEGQYGLEAAFRSVFPIQS 61 + + L+ QL S+ F ++ D ++ F S + Sbjct: 25 ISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITLQSDQLLANKIKMDFNSNDDDED 84 Query: 62 YSGNSELQYVSYRLGEPV------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + + + + P ++R ++YS LR +R+V+ + +K Sbjct: 85 QGKTIHISFGTSTVLRPTTPEGKQLTPMISRLRSLSYSLILRSDIRVVVMDS---NKNMK 141 Query: 116 DIKEQEVYMGEIPLM--TDNGT------------------------FVINGTERVIVSQ- 148 + V + ++P+M ++ F++NG+E+VI+ Q Sbjct: 142 QLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGGYFIVNGSEKVIIGQE 201 Query: 149 --LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF------DPKDNLFVRIDR 200 + P + K + ++ ++ + P+ + ++ + Sbjct: 202 HMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFLLAPTAKQPERPIHAKLSK 261 Query: 201 RRK-LPATIILRALNY-TTEQILDLF 224 K +P I+ RAL + ++ILDL Sbjct: 262 TEKTIPLFILFRALKFKGDKEILDLI 287 >UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MW98_PHYIN Length = 1179 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 127/335 (37%), Gaps = 84/335 (25%) Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G+ + + L R GDK + RHG KGV+S + P DMP+ E+G DI++ Sbjct: 890 GNSSSSSEFTKASIKLRFCRNPTIGDKFSSRHGQKGVMSILWPQADMPFSESGISPDIII 949 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP PSRM +G ++E+ GA + Sbjct: 950 NPHAFPSRMTVGMLIESMAAKT-------------------------------GALKGKY 978 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 +D + F E R+ LK G LY G +G Sbjct: 979 MDATPFQFSEKDRV-------------------IDYFGSQLKEHGYNYMGSEPLYSGISG 1019 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + + +G +Y +L H+V DK R+TG + +T+QP+ G+ + GG R GEME +L Sbjct: 1020 TVMQADIYIGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPVKGRKKGGGIRLGEMERDSL 1079 Query: 1279 EAYGAAYTLQEMLTVKSDD---------------------------------VNGRTKMY 1305 A+G A+ +Q+ L SD + +T+ Y Sbjct: 1080 LAHGCAFLVQDRLLNCSDKHIATVCTNCGSLLSNATQRSTVETAGQGEIAVAMKSKTQWY 1139 Query: 1306 KNIVDGNHQMEP-GMPESFNVLLKEIRSLGINIEL 1339 + +P MP F L E+ ++ I + L Sbjct: 1140 CTVCQTGESCQPVAMPYVFRYLANELAAMNIKMSL 1174 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 103/610 (16%), Positives = 197/610 (32%), Gaps = 85/610 (13%) Query: 340 DLDHGPYISETLRVDPTNDRLSALVE-IYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 L LR D N LSA VE I R + TR+ A + F Y Sbjct: 265 PLTDREIYERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYD 324 Query: 399 AVGRMKFNRSLL-------REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 + ++ LL + E + + +++KL G D+ D + N Sbjct: 325 NMNNVEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYAFAKGDVPEDNADSVMNH 384 Query: 452 RIRSVGEM--------AENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP-ISAAV 502 + G + + + + + + +D + + M P I A+ Sbjct: 385 ELLLPGHLYLMIMKEKLQESLVAMRANILKETQNKKRAVVMDQVFLRKMWERTPNIGNAM 444 Query: 503 KEFFGSSQLSQ--------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 F + L ++ N +H R ++ G E VR Sbjct: 445 TYFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHFR---SVHRGQFFTEMKTTAVR 501 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ----------------TNEYGFL----E 588 + P +G +CP+ TP+G GL+N L+V + FL Sbjct: 502 KLLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVCHPAFKADDYLQQEVKLARFLASLGM 561 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE---SSLF 645 P DG + YL + G + + + + +S E + + Sbjct: 562 IPTSGYADGALIVPYSYLPVMMNGKVLGGAPAEVCKRIAEVLRKVKSAKSSEERDANGIV 621 Query: 646 SRDQVDYM------DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 S +V + + + A + ++ D R M++ + + Sbjct: 622 SNLEVCLILPTRGGPFPGLYLSADAARMSRPVKQMDTKRIEYIGPMEQVFMDIACTKDDI 681 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + + ++ VA + D ++ + + +M G +++ RS Sbjct: 682 RPATTHMEIKPTNMLSLVASLT---PFSDYNQSPRNMYQCQMAKQTMGTPAHSIV--HRS 736 Query: 760 NQNTCINQMPCVS--LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 + Q P + E + + E LG N VA + + G++ ED+++ Sbjct: 737 DNKMYRIQSPQIPIVQNERLREYQL---------DEYPLGTNAVVAVISYTGFDMEDAMI 787 Query: 818 VSERVVQEDRFTTIHIQELACV-SRDTKLGPEEITADIPNV-----GEAALSKLDESGIV 871 +++ + ++L S + K G N+ G+ +KLD G Sbjct: 788 LNKSSYERGFGHASVYKQLTVDISSNGKQGSATSKKYFSNIKTDGSGDYCSTKLDRDGFP 847 Query: 872 YIGAEVTGGD 881 +IG V GD Sbjct: 848 HIGQVVNHGD 857 >UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata RepID=B6AI41_9CRYT Length = 1341 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 132/323 (40%), Gaps = 60/323 (18%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 + + + L + R GDK A RHG KG++S + P E+MP+ E+G DI+ NP G PSRM Sbjct: 1035 EKISLKLRIVRNPMVGDKFASRHGQKGILSMLWPHENMPFGESGIVPDILFNPHGFPSRM 1094 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +G ++E G AA G + + ++ I ++G D+ ++ + F Sbjct: 1095 TVGMLIECMAGKAACLHGASALDATPFHRNITD-KQTILEDKEMGIDLSKQSTVDYF--- 1150 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 + L G L++G TG + + + Sbjct: 1151 ----------------------------GKALLKTGFQYFGCEPLFNGMTGTEMPCHIFM 1182 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y +L H+V DK RSTG +T+QP+ G+ + GG RFGEME +L +YG + + Sbjct: 1183 GVIYYQRLRHMVADKAQVRSTGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSII 1242 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQME----------------------------PGM 1319 + L SD+ Y ++ + Sbjct: 1243 ADRLLKCSDEHKAYVCPYCGLIFSAILPRKTTNFQNRLATTLPHVAICKVCKTPCRLITL 1302 Query: 1320 PESFNVLLKEIRSLGINIELEDE 1342 P F L E+ ++ I I LE E Sbjct: 1303 PYVFRYLCNELATMNIVIRLELE 1325 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 48/219 (21%) Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 GR + +L E + L + +I + KL+ ++ G+ + ID + I S G + Sbjct: 377 GRFIIDNHILVHLPEWNAKL--ECLILMFIKLLKLQYGQIREESIDSFAYQEILSSGNLY 434 Query: 461 ENQFRVGLVRVERAVK---------ERLSLGDLDT---------------------LMPQ 490 + + + + ++ S + + Sbjct: 435 ASVLKDAIFSFLQKIRMIYITEIRNRNSSKSEKEASDELPLPYSSAALDLLRDDSFFKTS 494 Query: 491 DMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRISALGPGG 537 + N I ++ F + + D+ N ++H R A+ G Sbjct: 495 LIRNISMIPKRIQYFMATGNIKTTQLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQ 551 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 +VR + +G +CP+ TP+G GL+ LS Sbjct: 552 FFTTMKTTDVRKLMGETWGFLCPVHTPDGEPCGLLLHLS 590 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 73/235 (31%), Gaps = 70/235 (29%) Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 + ++ ++S+ ASLIP+ H+ + R + M +Q + Sbjct: 798 THQELHPSTILSITASLIPYAHHNQSPRNMYQCQMLKQTM-------------------- 837 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 YP +Y + Q P Sbjct: 838 -------------------------GTPCYSYPYRTDNRMYRIITP----------QNPL 862 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 V + +G S E G N VA + +GY+ ED++++++ + F Sbjct: 863 V-----ITKG-----YASYGFSEYPTGTNAIVAVISHSGYDMEDAMVLNKASYERGIFHA 912 Query: 831 IHIQE---LACVSRDTKLGPEEITA--DIPNVGEAALSKLDESGIVYIGAEVTGG 880 + A + K E +I G+ + +L G+ IG ++ G Sbjct: 913 CVYKTKILFAAPNSVIKKSDAESYRFHNIGPDGKLVIKELGADGLPMIGQKLVKG 967 >UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax=root RepID=RPOB1_METJA Length = 636 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 106/403 (26%), Positives = 173/403 (42%), Gaps = 90/403 (22%) Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 + LE + + + G V K E+ + + Q + + ++ E + Sbjct: 278 YRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHEITIQVK-PQRRDSSVVVRHGEEGY 336 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 +K + + ++ ++VKV + R + GDK A RHG KGV+ P E Sbjct: 337 -IDKVILTETKE----------GNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQE 385 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 D+P+ E+G DI++NP +PSRM +GQ+LE +G K+ A+ Sbjct: 386 DLPFTESGIVPDIIINPHAIPSRMTVGQLLEM--------LGGKVGAL------------ 425 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 +G I +F G KE ++++ L+ Sbjct: 426 ----------------------------------EGRRIDGTIFSGEKEWDLRKALEALG 451 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G+ +YDG+TG++FE + +G Y KL+HLV K+HARS G ++T+QP G+A Sbjct: 452 FKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRA 511 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN---------------GRTKMYKNI 1308 + GG RFGEME L +GAA L+E L +SD + R Y I Sbjct: 512 REGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFAILDYKRGLKYCPI 571 Query: 1309 V-------DGNHQMEPGMPESFNVLLKEIRSLGI--NIELEDE 1342 +P +F +LL E++S+ I I++ D+ Sbjct: 572 CGEIENLYSSKKIPFVRIPYAFKLLLDELKSMCILPRIKVRDK 614 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 129/331 (38%), Gaps = 53/331 (16%) Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK--RGGVVQYVDAS 730 ++++N + + R P + + E + G + + GV++Y+DA Sbjct: 49 NEESNDIHINTDAGRIVRPLIVVENGKPKLTKEHIEKLKKGEITFSDLVKEGVIEYLDAE 108 Query: 731 ---RIVIKVNEDEMYPGEAGIDIYNLT---------KYTRSNQN---TCINQMPCVSLGE 775 I ++E+E+ ++I LT Y N T M SLG Sbjct: 109 EEENAYIALSEEELTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGI 168 Query: 776 PVE--------RGDVL--ADGPS--TDLGEL------ALGQNMRVAFMPWNGYNFEDSIL 817 P+ RG L P T E+ GQN VA M + GYN ED+I+ Sbjct: 169 PMSNIKWRLDTRGHYLHYPQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIV 228 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG------EAALSKLDESGIV 871 ++ + + + R G + +IP+ G E L+E GIV Sbjct: 229 FNKSAIDRGLGRSTFFRTYDACERRYP-GGQMDRFEIPDKGVRGYRSEECYRYLEEDGIV 287 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 + + V GGD++VGK +P + I + +DSS+ V +G G + V Sbjct: 288 AVESHVKGGDVIVGKTSPPRFLEE-------HEITIQVKPQRRDSSVVVRHGEEGYIDKV 340 Query: 932 QVF-TRDG---VEKDKRALEIEEMQLKQAKK 958 + T++G V+ R L I E+ K A + Sbjct: 341 ILTETKEGNRLVKVKVRDLRIPELGDKFASR 371 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 39/125 (31%) Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 I YL A EE N IA + L E+ ++++ ++ Sbjct: 102 IEYLDAEEEENAYIALSEEELTEKH-----------------------THLEIDPLTILG 138 Query: 663 VGASLIPFLEHDDANRALMGANMQRQA--VP--------------TLRADKPLVGTGMER 706 +GA + P+ EH+ A R M A M +Q+ +P P+V T + Sbjct: 139 IGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQE 198 Query: 707 AVAVD 711 + D Sbjct: 199 ILGFD 203 >UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata RepID=B6KDI3_TOXGO Length = 1332 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 145/385 (37%), Gaps = 68/385 (17%) Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD--EEKQNQLEQLAEQYDELKHEF 1025 + R A+ G V +L + + + T+ E + L+ Y + Sbjct: 1000 RGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTNTREHVSDPLQLDNSLYAPSFARY 1059 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + + + ++ D+ + KV + R + GDK + RHG KGV+ I P ED+ Sbjct: 1060 KTVVPSYVERVVCTDN--SDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDL 1117 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 P+ E+G D+++NP G ++ K+ Sbjct: 1118 PFAESGWCPDLIMNPH----------------GFPSRMTVGKMM---------------- 1145 Query: 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP 1205 E++ L+ G F G + E+L Sbjct: 1146 ----------------------ELIAGKSALQVGACQYGTAFGGVGVETLGEILAAHGFH 1183 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 SG+ L G TGE + V G +Y KL H+V DK+HAR G L+T+QP G+A+ Sbjct: 1184 YSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEGRAKE 1243 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN----------GRTKMYKNIVDGNHQM 1315 GG R GEME L AYG++ L E L + SD G G H Sbjct: 1244 GGLRLGEMERDCLVAYGSSALLMERLMLSSDVFEASVCSTCGLMGYEGWCPYCKSGKHVA 1303 Query: 1316 EPGMPESFNVLLKEIRSLGINIELE 1340 MP + +L +E+ S+ + L Sbjct: 1304 PIRMPYACKLLFQELMSMNVCPRLH 1328 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 117/739 (15%), Positives = 242/739 (32%), Gaps = 123/739 (16%) Query: 257 ANGKVYVEKGRR--ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + ++ VE + + A + + V D ++ A Sbjct: 323 SKNRIIVETDMKHNVCATVTSATAESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMG 382 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 E +++ + G T T + + + + AL+ + +RP Sbjct: 383 TETDQEIMQMIGAGGALADVTGNTAQEAVSLSLQDC-HTENVLTQQQALLWVGSRIRP-- 439 Query: 375 PPTREAAESLF----ENLFFSEDRYDL-SAVGRMKFNRSLLREEIEGSGILSKDDI---- 425 + A+ F SE SA + +L + + D Sbjct: 440 ---KMQAKGFFTPVARGALLSERGGAGRSAKSVVDEAVDVLHRVVLSHIETTGSDFRAKT 496 Query: 426 ---IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER---- 478 ++++++D + +DD D+ GN+R+ G++ F R VK++ Sbjct: 497 RFLCLMIRRVLDAASDPSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRFCTHVKKQADYA 556 Query: 479 --------------------LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQ 517 + D +P D+I +A G+ + +F M++ Sbjct: 557 LSRYHQARGGAGGLGSRKDEVPYPDCFRNLPTDIITRGMQTALST---GNWTIKRFRMER 613 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIG 570 + ++ I+ LG +TR + FE R + P+ +G +CP +TPEG + G Sbjct: 614 SGVSQVLSRLSYIATLG--MMTRINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCG 671 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH 628 L+ +L++ TP + + ++ +S E + + N L Sbjct: 672 LVKNLALVTHVTTDEDP-TPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLGVHR 730 Query: 629 FVEDLV----TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA-LMGA 683 L+ R GE F V+ T + S G L L D+ R L+ Sbjct: 731 RPRQLMKNIRLLRRHGEVGEFVSVHVNEAH-KTVYIASDGGRLCRPLIVVDSGRPRLLPT 789 Query: 684 NMQRQA------VPTLRA----------DKPLVGTGMERAVAVDSGV------TAVAKRG 721 +M + + LR+ + L+ E + ++ T + Sbjct: 790 HMAQLENGEMCFMDLLRSSILEWIDVNEENNLLIALREEDITAETTHLEIDPLTLLGVVA 849 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G++ + + ++ + M G+ + ++ R + + P +P+ + Sbjct: 850 GLIAFPNHNQSPRNTYQCAM--GKQAMGAIAYNQFNRCDTLLYLLVYPQ----KPLCKSR 903 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 L +L GQN VA M ++GY+ ED+I+++ V ++ + + Sbjct: 904 TL---DLVHFEQLPAGQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELK 960 Query: 842 DTKLGPEEITADIP--------------------------NVGEAALSKLDESGIVYIGA 875 G + T P L++ G+V +G Sbjct: 961 KYFNGSTDRTFPPPVAQASGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGE 1020 Query: 876 EVTGGDILVGKVTPKGETQ 894 + + V K +P + Sbjct: 1021 LLEEDQVYVHKFSPTNTRE 1039 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 63/183 (34%) Query: 15 FGKRPQVLDVPY-------------LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP--- 58 + V VP L+ ++S+ F++ + L+ R+ Sbjct: 151 YASGKPVCTVPDKWRLLPAFFAAKGLVHQHIESYNFFVDTE------LQNILRAPSNRLV 204 Query: 59 IQSYSGNSELQYVSYRLGEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREA 109 + +++++ +G P + + C+ R +TY+AP+ V Sbjct: 205 KSDVDPSFFIEFLNISVGTPRYEEGMILQRLTPRICRTREITYAAPVFVDA--------E 256 Query: 110 PEGTVKDIKEQEVYMGEIPLMT------------------------DNGTFVINGTERVI 145 + I+ + V +G IP+M G F++ GTE+V+ Sbjct: 257 YSKGDEIIRRKHVEIGSIPVMLRSRVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVL 316 Query: 146 VSQ 148 + Q Sbjct: 317 LMQ 319 >UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomycetales RepID=C4QY42_PICPG Length = 1165 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 97/409 (23%), Positives = 149/409 (36%), Gaps = 65/409 (15%) Query: 921 PNGVSGTV----------IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 PNG + V D + + E+ + ++++ + I + Sbjct: 739 PNGTNAVVAVISYTGYDMDDAMIINKSSDERGFGYGTMYKVEVIDLADSRRKGDPITQHF 798 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 F + ++ D LP L D + L + + H E Sbjct: 799 GFG-TDEWPESWKQNLDE-DGLPAIGTLVNE-GDPIVAYYDDTLGKTKVKTYHSSEPAYI 855 Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 + + I+ DDL L++V + + R+ Q GDK + RHG KGV S+ P DMP+ E Sbjct: 856 EEVKLIS--DDLGDSELQMVTIKYRITRQPQIGDKFSSRHGQKGVCSRKWPQIDMPFTET 913 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD 1150 G D+++NP PSRM IG +E+ G A G + Q K E Sbjct: 914 GIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHG------IAQDSTPWKFNE------- 960 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 D E L G Sbjct: 961 -------------------------------------DDTPADFFGEQLISAGYNYHGNE 983 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 +Y G TGE+ + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R Sbjct: 984 PMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRNGGIRI 1043 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 GEME AL +G A+ LQ+ L SD + P + Sbjct: 1044 GEMERDALIGHGTAFLLQDRLLNCSDYTQTSICKGCGSLLNTQTSVPRI 1092 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 104/658 (15%), Positives = 200/658 (30%), Gaps = 176/658 (26%) Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLF--FSEDRYDLSAVGRMKFNRSLLREEI 414 DRL L+ Y+ + +++ + + F D+S V K + Sbjct: 282 TDRLELLLRNYK---HYKLVSKQETLAYLGDKFRVVFNATPDVSDVDVGKEVLRRIVLVH 338 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVR 470 ++ +++KL + +G D+ D ++ + G + + + L Sbjct: 339 LPDNRDKFRLLLFMIRKLYALVSGDCCPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLAS 398 Query: 471 VERAVKERLSLG---DLDTLMPQDMINAKP---ISAAVKEFFGSSQ-LSQ---------- 513 + ++ ++ G + D + + I ++ F + +SQ Sbjct: 399 IRLQIQTDINRGYPVNFDEPKYMSRVFQRINENIGKKLQYFLSTGNLVSQTGLDLQQVSG 458 Query: 514 ---FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 ++ N I+H R + G E VR + P +G +CP+ TP+G G Sbjct: 459 YTVVAEKINFYRFISHFR---MVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCG 515 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE-----------------EGN 613 L+N L+ + + + KV + H +A E Sbjct: 516 LLNHLAHKCKISTEESDVSKVPKVLSKLGVSANHVFAAGPQMCCVQLDGKIVGWCTHEQA 575 Query: 614 YVIAQA----------NSNLD-EEGHFVEDLVT-----------CRSKGESSLFSRDQVD 651 ++A LD E GH R D+ D Sbjct: 576 KIVADTLRFWKVEGGHGIPLDLEVGHVPPSSRGQYPGLYLFGGRARMTRPVRYLPLDKED 635 Query: 652 YMD----------VSTQ---------------QVVSVGASLIPFLEHDDANRALMGANMQ 686 + V+ + ++S+ A+L PF + + + R + M Sbjct: 636 IIGPFEQAYINIAVTPEEIESNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMG 695 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 +Q + P V ++ +++++Y + Sbjct: 696 KQTM-----GTPGVA-------------------------------LVHRSDNKLYRLQT 719 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 G Q P V L D D G N VA + Sbjct: 720 G-------------------QTPIVKAN--------LYDDYGMDN--FPNGTNAVVAVIS 750 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAAL 862 + GY+ +D++++++ + + D++ + IT E+ Sbjct: 751 YTGYDMDDAMIINKSSDERGFGYGTMYKVEVIDLADSRRKGDPITQHFGFGTDEWPESWK 810 Query: 863 SKLDESGIVYIGAEVTGGDILV-------GKVTPK----GETQLTPEEKLLRAIFGEK 909 LDE G+ IG V GD +V GK K E E KL+ G+ Sbjct: 811 QNLDEDGLPAIGTLVNEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLISDDLGDS 868 >UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepID=B3RKF5_TRIAD Length = 780 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 105/493 (21%), Positives = 180/493 (36%), Gaps = 99/493 (20%) Query: 886 KVTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFTRDG 938 ++TP + +P ++ + G K D+ L G + D + + Sbjct: 351 RLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSDNKLYRIQGYD--MEDAMILNKSS 408 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 VE+ I + ++ ++ L+I G +++ +D L + Sbjct: 409 VERGFAHATIYKSEVINLNSKTADGLEIFGQT----------PGTTDSDNID-LDGLPKI 457 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 L + L+ + + ++ G D L+ + V ++R Sbjct: 458 GSILNSGDPYYCTLNLSTSQCVVHYYRGQEQGIVDDVKLLGSDSGRKPLQRICVKFRIER 517 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 GDK + RHG KGV S++ PIE+MP+ E+G DI+ NP G PSRM IG ++E+ G Sbjct: 518 NPIIGDKFSSRHGQKGVCSQLWPIENMPFTESGMTPDILFNPHGFPSRMTIGMMIESMAG 577 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 +A G D + F E + Sbjct: 578 KSASLHG-------------------------------LCHDATPFQFSEKV-------- 598 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 + + L+ G R+YDG +GE+FE + +G +Y +L H+ Sbjct: 599 -----------SAVDYFGKYLEKAGYNYFGTERMYDGMSGEEFEANIFIGTVYYQRLRHM 647 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 + DK R+TG +T+QP+ G+ + GG RFGEME AL ++G ++ LQ+ L SD Sbjct: 648 ISDKFQVRTTGPIDSLTRQPVQGRKRAGGVRFGEMERDALISHGTSFLLQDRLLNCSDKS 707 Query: 1299 NGRTKM-----------------------------YKNIVDGNHQMEPGMPESFNVLLKE 1329 + +P + L+ E Sbjct: 708 VAHVCKKCGSVLGITTDVNKNEADIFREFSRKVYRCTTCDSTQEVTKMYLPYVYLYLVTE 767 Query: 1330 IRSLGINIELEDE 1342 +L I +E E Sbjct: 768 FAALNIKAVIEVE 780 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 94/560 (16%), Positives = 181/560 (32%), Gaps = 125/560 (22%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVRVERAVKERLS 480 +I +++KL + NG+ +++ D N+ I G M + + + L RV+ + + ++ Sbjct: 27 LIYMIRKLYAVANGECQIESQDSPMNQEILLGGHMYSMVLKEKLELWLSRVKNLILKYMA 86 Query: 481 LGD---LDTLMPQDMINAKPISAAVKEFFGSSQLSQ--------------FMDQNNPLSE 523 + L+ + + N I ++ F + L D+ N + Sbjct: 87 KTNDEKLENAIVRAANNGTNIPNQLEYFLATGNLVARADLGLMQVAGYVLVADRLNFMRF 146 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT-- 581 ++H R ++ G E VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 147 VSHFR---SVHRGSFFTEMRTTAVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAASCKVVT 203 Query: 582 ---NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 + + T Y + I Y SA +V+ ++ + Sbjct: 204 KMSDTTKLVSTLYELGMLSLSDPLIEYSSA-----HVV------------ILDGKIVGYI 246 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGA--------------SLIPFLEHDDANRALMGAN 684 + E D++ Y+ ++ +V L F R + Sbjct: 247 QKEIGKEIADKLRYLKINNMDMVDPSTEIALVHDGISGLYNGLYLFTSPARMIRPVTNLR 306 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 +Q+Q + G V +D +TA V E+ P Sbjct: 307 LQKQEMI-----------GTFEQVFMDICITAEEAYAEV------------TTHQELSPC 343 Query: 745 EAGIDIYNLTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + LT ++ NQ N QM ++G P++ +D N Sbjct: 344 SMLSALARLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSD-------------NKL 390 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 GY+ ED++++++ V+ + EI P ++ Sbjct: 391 YRI---QGYDMEDAMILNKSSVERGFAHATIYKSEVINLNSKTADGLEIFGQTPGTTDS- 446 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 +D G+ IG+ + GD P L + Sbjct: 447 -DNIDLDGLPKIGSILNSGD---------------PYYCTLNLSTSQCVVHYY------R 484 Query: 922 NGVSGTVIDVQVFTRDGVEK 941 G V DV++ D K Sbjct: 485 GQEQGIVDDVKLLGSDSGRK 504 >UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=Euryarchaeota RepID=RPOB1_METVS Length = 611 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 106/402 (26%), Positives = 165/402 (41%), Gaps = 88/402 (21%) Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 E + L + + + +G V K E+ L + Q + Sbjct: 271 EEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQEITLQTK------SQRRDTSVT 324 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 ++H E ++ T+ ++ KV + R + GDK A RHG KGVI + Sbjct: 325 IRHGEEGVVDLVILSETK------EGNRLGKVRVRDLRVPEFGDKFASRHGQKGVIGLVV 378 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P ED+P+ E+G D+++NP +PSRM IGQ+LE G Sbjct: 379 PQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGK--------------------- 417 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 +G+ ++VD + +F G E ++ L+ Sbjct: 418 ----------VGSLECRRVDGT-----------------------IFSGEGEWALRHALE 444 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 SG+ +YDG+TG + E + VG Y KL+HLV K+HARS G ++T+QP Sbjct: 445 NYGFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTE 504 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN------------- 1307 G+A+ GG RFGEME L A+GAA L+E L +SD Sbjct: 505 GRAREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKF 564 Query: 1308 ---------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 I D + +F +LL E++S+GI+ +L+ Sbjct: 565 CPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLK 606 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 124/329 (37%), Gaps = 53/329 (16%) Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL--VGTGMERAVAVDSGVTAVA 718 +S S+ E +D + + R P + + + + V + Sbjct: 36 LSPNTSISFNEESND---IHISTDGGRAVRPLVVVENGFSKLTNELLEKVNNNELTFEYL 92 Query: 719 KRGGVVQYVDAS---RIVIKVNEDEMYPGEAGIDIYNLT---------KYTRSNQN---T 763 + GV++++DA I + DE+ ++I L Y N T Sbjct: 93 VKTGVIEFLDAEEEENARIAMYNDEITFENTHVEIDPLVILGIGAGVAPYPEHNSAPRIT 152 Query: 764 CINQMPCVSLGEPV--------ERGDVL--ADGPS--TDLGEL------ALGQNMRVAFM 805 M SLG P+ RG +L P T E+ GQN VA M Sbjct: 153 MAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVM 212 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG------E 859 + GYN ED+ ++++ ++ + + + G + ++P G E Sbjct: 213 SYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEKRYP-GGQLDKFEVPEKGVRGYRAE 271 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 A L + G++ + +EV GD+++GK +P + +E L+ S +D+S+ Sbjct: 272 EAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLE--EQEITLQT-----KSQRRDTSVT 324 Query: 920 VPNGVSGTVIDVQVF-TRDGVEKDKRALE 947 + +G G V V + T++G K + Sbjct: 325 IRHGEEGVVDLVILSETKEGNRLGKVRVR 353 >UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular organisms RepID=Q67ZK6_ARATH Length = 639 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 100/433 (23%), Positives = 170/433 (39%), Gaps = 75/433 (17%) Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE--KLDKLPR 994 D + +K +LE M + + E+ ++ ++ ++ G ++ K+D L Sbjct: 253 DSIVMNKASLE-RGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLED 311 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 D + +G + + E +K + ++ ++ ++ D+ V Sbjct: 312 DGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDE----GKNFAAV 367 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L R GDK + HG KGV+ + ++ P+ G DIV+NP PSR GQ+ Sbjct: 368 SLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQL 427 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 LE L +KGI I + Sbjct: 428 LEAAL---SKGIACPIQ-----------------------------------KEGSSAAY 449 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 + R P +TP EI E L G R+Y+GR+GE + +G + Sbjct: 450 TKLTRHATPFSTP-----GVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFY 504 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E L Sbjct: 505 QRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLF 564 Query: 1293 VKSDD----VNGRTKMYKN-------------------IVDGNHQMEPGMPESFNVLLKE 1329 SD + + K Y N V +H + +P +L +E Sbjct: 565 TLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQE 624 Query: 1330 IRSLGINIELEDE 1342 + S+GI + + E Sbjct: 625 LFSMGITLNFDTE 637 Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 27/146 (18%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL--ACVSRDT---KLGPEEIT 851 GQN VA GYN EDSI++++ ++ F + I+ ++D+ K E + Sbjct: 236 GQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQ 295 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + + L++ G +IGA ++ GDI++G+ T G Sbjct: 296 FGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG-------------------- 335 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRD 937 D S+++ + G V V + + D Sbjct: 336 --ADHSIKLKHTERGIVQKVVLSSND 359 >UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=Archaea RepID=RPOB1_METTH Length = 603 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 94/312 (30%), Positives = 142/312 (45%), Gaps = 71/312 (22%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 ++ K+ + +R+ + GDK A RHG KGV+ I EDMP+ E+G D+++NP +PSRM Sbjct: 345 RLAKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRM 404 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 + +G + + K M Sbjct: 405 S--------VGQVLEMLAGKAACM------------------------------------ 420 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 +G + F G E +IKE L+ T+G LY+G TGE+ E + + Sbjct: 421 ----------EGRRVDGTPFTGEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFI 470 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y KL+H+ DK++ARS G ++T+QP G+A+ GG RFGEME L A+GAA L Sbjct: 471 GVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALAL 530 Query: 1288 QEMLTVKSDDVNG---------------RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 +E L +SD R K Y I + + + +F +LL E++S Sbjct: 531 KERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICEDSESFPVEVSYAFKLLLDELKS 590 Query: 1333 LGI--NIELEDE 1342 L I + LED+ Sbjct: 591 LCIFPKLILEDK 602 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 134/388 (34%), Gaps = 54/388 (13%) Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 TC + E R + +VS + ++ D RA R+ + + Sbjct: 15 TCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRA-------RRPLIIVE 67 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR-----IVIKVNEDEMYPGEAGID 749 +PL+ + G+++Y+DA I + +E ID Sbjct: 68 DGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDAEEEENAYIAMSPDEINDEHTHLEID 127 Query: 750 ----------IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS----------- 788 I + S +NT M +LG D+ D + Sbjct: 128 PSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVPIV 187 Query: 789 -------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 T E GQN VA M + GYN ED++++++ ++ + + R Sbjct: 188 KTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEAAER 247 Query: 842 DTKLGPEEITADIPNVG------EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 G E+ +IP G E+ LDE GI+ AEV+ GD+L+GK +P + Sbjct: 248 RYPGGQED-RFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPRFLEE 306 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 E FG A +++S+ V +G G V V + + + E+ Q + Sbjct: 307 IDE-------FGTVAERRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPEL 359 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGG 983 K S Q GL + Sbjct: 360 GDKFASRHGQKGVVGLIVSQEDMPFTED 387 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 28/150 (18%) Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 I YL A EE N IA + +++E ++++ ++ Sbjct: 97 IEYLDAEEEENAYIAMSPDEINDEH-----------------------THLEIDPSTMLG 133 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA---- 718 + A +IPF H+ + R M A M +QA+ ++ L T + V V Sbjct: 134 ICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDL-RTDTRAHLLHHPQVPIVKTRII 192 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 G + V+ V E Y E + Sbjct: 193 DVTGYDERPSGQNFVVAVMSYEGYNMEDAL 222 >UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomatidae RepID=Q583H5_9TRYP Length = 1190 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 88/412 (21%), Positives = 151/412 (36%), Gaps = 82/412 (19%) Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 EK + E+ E+ ++ + L+ + ++ G + K +P+ E Sbjct: 836 EKKREGREMFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTLSEE 895 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 ++D + ++ + E K ++ + + + + KV + + Sbjct: 896 SPVSDTRILKRDCSISSRAAE-KGVVDRVMLTENK-----------GNRFTKVRIRTIKI 943 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 GDK RHG KG EDMP++ +G D+++NP +PSRM + ++ Sbjct: 944 PNIGDKFCSRHGQKGTNGIQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLI------ 997 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 E + + G Sbjct: 998 -----------------------------------------------ETLAGKVACYKGG 1010 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 ATP F + + L L G RLY+G TG + + G Y +L HL Sbjct: 1011 EVYATP-FCSVVVEDFGKALTQLKLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLS 1069 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD--- 1296 DK+HAR G + +QP G+A GG RFGEME + +YGA+ L+E L SD Sbjct: 1070 SDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYS 1129 Query: 1297 -------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 D + + + +H + MP + +L +E+ S+ I Sbjct: 1130 VHVCNMCGTICAADTDQNLYKCQGCDNDSHISQVLMPYACKLLFQELMSMAI 1181 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 116/598 (19%), Positives = 216/598 (36%), Gaps = 94/598 (15%) Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL---S 480 I ++ +L+ + G+ E D D LG++RI G + Q LV+V R + + + S Sbjct: 381 FIGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYS 440 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEITHKR 528 + +++ + I+ ++ + +SQ +++ S +++ R Sbjct: 441 TNRGGVVSFGRILHNRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLR 500 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 RI ++ R++H T +G +CP+ETPEG +IGL+ +L++ + Sbjct: 501 RIQN----PISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHT 556 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 + V + LS + + N L E L+ + Sbjct: 557 GVVQAVQSRITGFHSIALSDLADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGELSN 616 Query: 649 QVDYM-DVS--TQQVVSVGASLIPFLEHDDANRALMGANMQRQAV-PTLRADKPLVGTGM 704 +V + D+ +V S G + L + +R +Q+ + L L G Sbjct: 617 EVSIVRDIRDREIRVFSDGGRCLRPLFVVEKSRI----KLQKAGIGELLEPSTTLGG--- 669 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDA-----------------SRIVIKVNEDEMYPGEAG 747 + G V+ +D + D Sbjct: 670 -----RREISWNKVMKKGYVELIDCEEEDSLLIAMVPSEVGKNYFYSHCEMDPSMILGIC 724 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------------T 789 I + +S +NT + M ++G ++ D + Sbjct: 725 ASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMSYM 784 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 +L G N VA ++GYN EDSI++S V+ F ++ + + G E Sbjct: 785 RSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREGREM 844 Query: 850 ITADIP-----NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET--QLTP--EEK 900 +IP +V A +KLD G++ G V GGDI+VGK P +T + +P + + Sbjct: 845 --FEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTLSEESPVSDTR 902 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK---RALEIEEMQLKQ 955 +L+ +D S+ G V V + G K R ++I + K Sbjct: 903 ILK----------RDCSISSRAAEKGVVDRVMLTENKGNRFTKVRIRTIKIPNIGDKF 950 Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 46/166 (27%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAF----RSVFP---IQSYSGNSELQYVSYRLGEPV 79 L+ Q+DS+ F+ + P L P ++S L +G P Sbjct: 56 LVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQYRLSLEDVVVGNPS 115 Query: 80 FD-------------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 + EC++R +TY A +V L + +Y + Q + +G Sbjct: 116 HEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREEQP--YRTFLQNMELGR 173 Query: 127 IPLMTDN------------------------GTFVINGTERVIVSQ 148 IP+M + G F++NGTE+V+++Q Sbjct: 174 IPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQ 219 >UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSL6_9ALVE Length = 1255 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 122/322 (37%), Gaps = 63/322 (19%) Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 + L + R GDK + RHG KGV++ + P DMP+ +G DI+ NP G+PSRM IG Sbjct: 958 SIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMPFSTSGISPDIMFNPHGMPSRMTIG 1017 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 ++E G AA G + V+ ++F Sbjct: 1018 MLIEFMAGKAAALTGMPV------------------------------VNANSFRQYRGK 1047 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 L + D E LK G LY G GE + + +G + Sbjct: 1048 GLLDTEHNNEKDPYAPGDTTAHEYFGETLKKFGYEYLGAEELYSGMHGEPLKTHIYMGVV 1107 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L ++G + L + Sbjct: 1108 YYQRLRHMVLDKFQVRATGPIDPLTRQPVKGRKKHGGVRFGEMERDSLISHGTSALLADR 1167 Query: 1291 LTVKSDDVNG-RTKMYKNIVDGNHQME--------------------------------P 1317 L SD +I+ H E Sbjct: 1168 LLKCSDACEDWVCPECGSILSYAHSPETVKRYSGREAAAQAPICRACSTERGIEVRCAAV 1227 Query: 1318 GMPESFNVLLKEIRSLGINIEL 1339 +P F + E S+ I + L Sbjct: 1228 TLPYVFRYMSAEFASMNIRLRL 1249 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 90/524 (17%), Positives = 196/524 (37%), Gaps = 85/524 (16%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR----VGLVRVE-----RAV 475 ++ + +KL+ + G D+ D + + + G++ + L+R+E ++ Sbjct: 395 LVLIFRKLMALVRGDIAPDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKKSR 454 Query: 476 KERLSLGDLDTLMPQDMINAKP-----ISAAVKEFFGSSQLSQ--------------FMD 516 + ++ G T++ ++I ++ ++ F + ++ D Sbjct: 455 QAQVGKGRAPTVLSAELIRNTFMGVCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVAD 514 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + N ++H R A+ G +E VR + P +G +CP+ TP+G GL+N L+ Sbjct: 515 KLNAYRYLSHFR---AVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLA 571 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYL-------SAIEEGNYVIAQANSNLDEEGHF 629 Q + +P V G+ +E+ L S NY A N+ + +G Sbjct: 572 APCQPVVR--IASP-EGVIPGL-EEELASLGVQLVRSSKTSTANY-GAGENAYVTLDGRV 626 Query: 630 VEDLVTCRSKGESSLFSRDQVDY--------MDVSTQQVVSVGASLIPFLEHDDANRA-- 679 + + R + + R ++D +++ Q + L F R Sbjct: 627 LGKVARSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPASFEGLWLFTGPCRMVRPVR 686 Query: 680 --------LMGANMQRQAVPTLRADKPLVGTGMERAVAVD----------SGVTAVAKRG 721 L+G M++ + + L + +V + S ++ ++ Sbjct: 687 DLATGNEELVGP-MEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSVIA 745 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G+ + + ++ + + +M + + I L R++ P P+ R Sbjct: 746 GLTPFSNHNQSPRNMYQCQML--KQTMAIPYLNHPYRTDNKVYKITYPQF----PMVRTT 799 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT-TIHIQELACVS 840 VL++ + G N VA + +G++ ED++++S+ +++ ++ Sbjct: 800 VLSEA---NFDVKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKTKVINCP 856 Query: 841 RDTKLGPEEITADIPN---VGEAALSKLDESGIVYIGAEVTGGD 881 +G N GE + LD GI YIG +V GD Sbjct: 857 PKGTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHEGD 900 >UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota RepID=Q0UYS5_PHANO Length = 1616 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 100/495 (20%), Positives = 159/495 (32%), Gaps = 126/495 (25%) Query: 921 PNGVSGTV----------IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 PNG + V D + + E+ I + ++ ++ + Sbjct: 1174 PNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIYKTKICDLEE---GARRNRSGR 1230 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF----- 1025 S++ V A + + L D +G YD ++ Sbjct: 1231 TISKLFGFAPDSLVPASRKETLDEDGLPRIGTLLRNGDAIAAWHTVSYDAASDDYVNRDA 1290 Query: 1026 --------EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 E +L G + + + + L V R GDK + RHG KGV S Sbjct: 1291 NTNYFKYKEDELAFVEEVRIIGSEDGTQPCQKLSIKLRVPRSPVIGDKFSSRHGQKGVCS 1350 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 + P DMP+ E+G D+++NP PSRM IG +E+ G A Sbjct: 1351 QKWPSIDMPFSESGIQPDVIINPHAFPSRMTIGMFVESLAGKA----------------- 1393 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 GA D + F +E Sbjct: 1394 --------------GALHGIAQDSTPFRFDEQ-------------------NTAVDFFGH 1420 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L G +Y G TG++ + +G +Y +L H+V+DK R+TG + T Q Sbjct: 1421 QLMKAGYNYYGNEPMYSGITGQELAADIYIGVVYYQRLRHMVNDKYQVRTTGPINSTTGQ 1480 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG----------------- 1300 P+ G+ + GG R GEME AL A+G A+ LQ+ L SD Sbjct: 1481 PIKGRKKGGGIRVGEMERDALIAHGTAFLLQDRLMNCSDYTKAPICRECGSFLSTAPTVS 1540 Query: 1301 --------------RTKMYKNIVD-------------------GNHQMEPGMPESFNVLL 1327 R + D G + +P L Sbjct: 1541 EYGRKKDRGAQLTIRCRRCAKPADGITNKADVWMDGQGMRFQGGENIGVVAVPGVLKYLD 1600 Query: 1328 KEIRSLGINIELEDE 1342 E+ S+G+ ++ + E Sbjct: 1601 VELASMGVKLKFKVE 1615 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 98/301 (32%), Gaps = 55/301 (18%) Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR-- 371 + E+ L+ G + + D + T +V + + + + + Sbjct: 268 DREIFEGLVGAAGSEGLAEKQFV----TDRVELLLRTYKVYGLHSKAKTRAYLGQKFKVV 323 Query: 372 ---PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 P + EA R L +G + ++ ++ + Sbjct: 324 LQIPEDTSDEEAGTEFL-------RRIVLPHLGAYHITPAQDADKFRM--------LLFM 368 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVRVERAVKE------- 477 ++KL + G+ VD+ D + N+ I G++ + + L + +++ Sbjct: 369 IRKLYSLVEGECCVDNPDAVQNQEILLGGQLYGMIMKERLDDWLQSMRPVLQDWGRRTEW 428 Query: 478 -RLSLGDLDTLMPQDMINAKP--ISAAVKEFFGSSQLSQ--------------FMDQNNP 520 + + ++ I A++ F + L ++ N Sbjct: 429 RPFTSQEFQKDFISKILRRSQTDIGRAMEYFLSTGNLISPTGLDLQQTAGFVVVAEKINF 488 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 I+H R + G E VR + P +G +CP+ TP+G GL+N S + Sbjct: 489 YRFISHFR---MVHRGAFFAELKTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFSHKCK 545 Query: 581 T 581 Sbjct: 546 L 546 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 28/176 (15%) Query: 724 VQYVDASRIV-------IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSL 773 V+Y D +I G+ + R++ T Q P V Sbjct: 1103 VEYSDNDKIQEVIDAAQKPFFTGNCQMGKQSMGTPGTAMRYRTDNKTYRLQTGQTPVVRP 1162 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 E G G N VA + + GY+ +D++++++ + Sbjct: 1163 PLHNEYG----------FDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIY 1212 Query: 834 QE----LACVSRDTKLGPEEIT--ADIPN--VGEAALSKLDESGIVYIGAEVTGGD 881 + L +R + G P+ V + LDE G+ IG + GD Sbjct: 1213 KTKICDLEEGARRNRSGRTISKLFGFAPDSLVPASRKETLDEDGLPRIGTLLRNGD 1268 >UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta RepID=Q9C8S4_ARATH Length = 1114 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 128/369 (34%), Gaps = 84/369 (22%) Query: 1016 EQYDELKHEFEKKLEAKRRK--------ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 E Y + E K +RK D + + + R GDK + Sbjct: 777 EPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFS 836 Query: 1068 GRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 RHG KGV S++ P DMP++ G D+++NP PSRM I +LE+ Sbjct: 837 SRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKG------ 890 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 G+ + VD + F D E K Sbjct: 891 -------------------------GSLHGKFVDATPFRDAVKKTNGEEESK-------- 917 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 ++ +LK G LY G G + + + +G +Y +L H+V DK R Sbjct: 918 -SSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 976 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--- 1303 STG +T QP+ G+ + GG RFGEME +L A+GA+Y L + L SD Sbjct: 977 STGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLC 1036 Query: 1304 --------------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 + MP F L E+ Sbjct: 1037 GSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELA 1096 Query: 1332 SLGINIELE 1340 S+ I + L+ Sbjct: 1097 SMNIKMTLQ 1105 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 85/514 (16%), Positives = 168/514 (32%), Gaps = 80/514 (15%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE----MAENQFRVGLVRVERAVKERLS 480 +I +++KL + + D+ D L N+ I G + + L + + +K+ L Sbjct: 285 LIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELD 344 Query: 481 LGDLD-----TLMPQDMINAKP---ISAAVKEFFGSSQLS---------------QFMDQ 517 + + +IN P I +++ + L Q ++ Sbjct: 345 NTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQ-AER 403 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N L ++ R A+ G VR + P +G +CP+ TP+G GL+N ++ Sbjct: 404 LNFLRFLSFFR---AVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTR 460 Query: 578 YAQT----NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA--QANSNLDEEGHFVE 631 ++ + G + + K+ VV V A ++ +G V Sbjct: 461 TSRITSQFDSKGNIRD-FLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVG 519 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 L + S R +V+ V + + +P + + R P Sbjct: 520 TLSSNLVTKVVSYIRRLKVEAPSVIPEDL---EVGYVPTSMGGSYPGLYLASCPARFIRP 576 Query: 692 TLRADKP---LVGTGMERAVAVDSGVTAVAKRG---------GVVQYV-------DASRI 732 P + G VA + ++ G++ V D ++ Sbjct: 577 VKNISIPSDNIELIGPFEQVANPINIIFISTFPATHEEIHPTGMISVVANLTPWSDHNQS 636 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + + +M L R++Q Q P PV R S D Sbjct: 637 PRNMYQCQMAKQTMAYSTQALQ--FRADQKIYHLQTPQ----SPVVRTKTYT-TYSID-- 687 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 E G N VA + G++ ED++++++ V+ H Q + L + Sbjct: 688 ENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGM---CHGQIYQTE--NIDLSDQNSRF 742 Query: 853 DIPNVGEAALSK------LDESGIVYIGAEVTGG 880 D + + +D G+ +G ++ Sbjct: 743 DSGSKSFRRSTNKAEHFRIDADGLPSVGQKLYPD 776 >UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SKJ8_VERA1 Length = 1105 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 62/306 (20%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 ++KV RR + GDK + RHG KGV+ I ED+P+ + G DI++NP G PSR Sbjct: 844 NMVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSR 903 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M + G + + + Sbjct: 904 MTV---------------GKLLECLTGKAS------------------------------ 918 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 L G A F ++ E L G+ G TGE E + Sbjct: 919 ----VLDGRPDYGFGDA---FRSHPLKQMSEALVDHGFSWEGKDYFTSGITGEPLEAYIF 971 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G +Y +L H+V DKMH+R+ G +++T+QP G+++ GG R GEME L AYGA+ Sbjct: 972 NGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQL 1031 Query: 1287 LQEMLTVKSD----DVNGRT-----KMYKNIVDGNHQM-EPGMPESFNVLLKEIRSLGIN 1336 L E L + SD D+ + K Y + ++ + MP + +L++E+ S+ + Sbjct: 1032 LLERLMISSDGTEIDICQQCGLFGYKGYCHTCRSTKEVTKMTMPYAAKLLVQELISMNVG 1091 Query: 1337 IELEDE 1342 + L+ E Sbjct: 1092 VRLQME 1097 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 110/659 (16%), Positives = 216/659 (32%), Gaps = 119/659 (18%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + + I + ++ L+ E+L + + + +T+ + K ++ L Sbjct: 170 LDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNNIITAS---VTSSTHERKTKTNITL 226 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + + +V ++ + ++ A LS + +L R + FT + D Sbjct: 227 KKDRIS-----LVHNVLVEPAPIVIVLKALGGLSDLEIMQLVAGDDGRYQDEFTVNFDEA 281 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPG----EPPTREAAESLFENLFFSEDRYDLSAV 400 + AL I ++ G P +A ++ E + ++ + Sbjct: 282 T-------KQGVYTQQQALEWIGSRVKMGGRGRFQPNSQARKNNIEEGMDALSNLIIAHI 334 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIID-VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM 459 +EG K + + ++++ + VDD D +GN+R+ G++ Sbjct: 335 ------------PVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQL 382 Query: 460 AENQFRVGLVRVERAVK-------ERLSLGDLDTLMPQDMINAKPISAAVKEFF--GSSQ 510 F + VK ++ + + +A I + G+ Sbjct: 383 LSLLFEDLFKKFCGDVKASIDKVLKKDNRAVAMDAVTMISNHANNIGQGINRAIQTGNWT 442 Query: 511 LSQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIE 562 + +F M++ ++ ISALG +TR + FE R + P+ +G +CP + Sbjct: 443 VKRFNMNRAGVTHVLSRLSYISALG--MMTRISSQFEKTRKVSGPRALQPSQWGMLCPSD 500 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE------EGNYVI 616 TPEG GL+ +L++ E R V V D + + EG+Y+I Sbjct: 501 TPEGEACGLVKNLALMTHITTNAEEEPVKRWVFT--VDDNVEPIRNFSGSEMHREGSYII 558 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 + F R R +S V + D Sbjct: 559 HINGTP------FALTKFPKRFTNRFRTMRRRG----WISPFVGVHINNHFNAVHIATDE 608 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK--RGGVVQYVDASRI-- 732 R + ++ KP + E + G GVV+Y+D + Sbjct: 609 GRIC-------RPYIIVKNGKPKLKA--EHLKLLQLGKATFDDFLTNGVVEYLDVNEEND 659 Query: 733 -VIKVNEDEMYPGEAGIDIYN---------LTKYTRSNQ---NTC-------------IN 766 ++ + E ++ ++I L + NQ NT N Sbjct: 660 TLVALYETDVNQSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYN 719 Query: 767 Q--------MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 Q V P+ + +L GQN V M ++GY+ ED++L Sbjct: 720 QFNRIDTLLYTLVYPQRPMVISKTI---QLIHYDKLPAGQNATVVVMSYSGYDIEDALL 775 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 76/400 (19%), Positives = 129/400 (32%), Gaps = 58/400 (14%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 F P L V L+ +DS+ F++ + + RS + + L++ R Sbjct: 32 FQLLPAFLKVKGLVKQHIDSYNFFVDHEIKDIVRANRTIRS-----DVNSSFWLEFTDIR 86 Query: 75 LGEP------------VFDVQECQIRGVTYSAPLRVKL-----------------RLVIY 105 + P EC++R +TY AP+ V + RL + Sbjct: 87 VESPSRLDFNDARAHSEVTPMECRLRDMTYGAPIFVDIAYIRDKSKIVRRNVPLGRLPVM 146 Query: 106 EREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 + A ++ M E PL G F+INGTE+VI+ Q S K + Sbjct: 147 LKSAKCRLNGASNKEMALMNECPL-DPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNN 205 Query: 166 SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAL-NYTTEQILDLF 224 + ++ R + + V P I+L+AL + +I+ L Sbjct: 206 IITASVTSST--HERKTKTNITLKKDRISLVHNVLVEPAPIVIVLKALGGLSDLEIMQLV 263 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 ++ + +G V+ G R + Q K++++ Sbjct: 264 AGDDG--RYQDEFTVNFDEATKQGVYTQQQALEWIGSRVKMGGRGRFQPNSQARKNNIEE 321 Query: 285 IE----------VPVEYIAGKVVAKDYIDESTGELICAANMELSLD-------LLAKLSQ 327 +PVE + A + L+ ANM L D L Q Sbjct: 322 GMDALSNLIIAHIPVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQ 381 Query: 328 SGHKRIETLFTNDL-DHGPYISETLRVDPTNDRLSALVEI 366 E LF D I + L+ D + A+ I Sbjct: 382 LLSLLFEDLFKKFCGDVKASIDKVLKKDNRAVAMDAVTMI 421 >UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=Q9FXG4_ARATH Length = 1233 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 128/369 (34%), Gaps = 84/369 (22%) Query: 1016 EQYDELKHEFEKKLEAKRRK--------ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 E Y + E K +RK D + + + R GDK + Sbjct: 896 EPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFS 955 Query: 1068 GRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 RHG KGV S++ P DMP++ G D+++NP PSRM I +LE+ Sbjct: 956 SRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKG------ 1009 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 G+ + VD + F D E K Sbjct: 1010 -------------------------GSLHGKFVDATPFRDAVKKTNGEEESK-------- 1036 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 ++ +LK G LY G G + + + +G +Y +L H+V DK R Sbjct: 1037 -SSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 1095 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--- 1303 STG +T QP+ G+ + GG RFGEME +L A+GA+Y L + L SD Sbjct: 1096 STGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLC 1155 Query: 1304 --------------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 + MP F L E+ Sbjct: 1156 GSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELA 1215 Query: 1332 SLGINIELE 1340 S+ I + L+ Sbjct: 1216 SMNIKMTLQ 1224 Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 82/552 (14%), Positives = 172/552 (31%), Gaps = 127/552 (23%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE----MAENQFRVGLVRVERAVKERLS 480 +I +++KL + + D+ D L N+ I G + + L + + +K+ L Sbjct: 375 LIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELD 434 Query: 481 LGDLD---TLMPQDMINAKPISAAVKEFFGSSQLS---------------QFMDQNNPLS 522 + +I I +++ + L Q ++ N L Sbjct: 435 NTNSKFSFESRKSLLILFSLIGTSIETLLKTGALKTQSGLDLQQRAGYTVQ-AERLNFLR 493 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS----VY 578 ++ R A+ G VR + P +G +CP+ TP+G GL+N ++ + Sbjct: 494 FLSFFR---AVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRIT 550 Query: 579 AQTNEYGFLETPYRKVTD-----------------------------------------G 597 +Q + G + + K+ Sbjct: 551 SQFDSKGNIRD-FLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSN 609 Query: 598 VVTDEIHYLSAIEEGNYVIAQAN-----SNLDEEGHFVE---DLVTCRSKGESSLFSRDQ 649 +VT + Y+ ++ + + G + R S Sbjct: 610 LVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISIPS 669 Query: 650 VDYMDVSTQQVVSVGASLI-----PFLEHDDANRALMGANMQRQAVP----------TLR 694 + + + V+ ++I P ++ ++ + L + P +L Sbjct: 670 DNIELIGPFEQVANPINIIFISTFPGIQSNEKKKILPNQVFMEISCPDGGNGGRNNSSLA 729 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 + + TGM VA + + D ++ + + +M L Sbjct: 730 THEEIHPTGMISVVAN------------LTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQ 777 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 R++Q Q P PV R S D E G N VA + G++ ED Sbjct: 778 --FRADQKIYHLQTPQ----SPVVRTKTYT-TYSID--ENPTGTNAIVAVLAHTGFDMED 828 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK------LDES 868 ++++++ V+ H Q + D L + D + + +D Sbjct: 829 AMILNKSSVERGM---CHGQIYQTENID--LSDQNSRFDSGSKSFRRSTNKAEHFRIDAD 883 Query: 869 GIVYIGAEVTGG 880 G+ +G ++ Sbjct: 884 GLPSVGQKLYPD 895 >UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2EN74_TRIVA Length = 1104 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 135/349 (38%), Gaps = 71/349 (20%) Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 E + + + + + IT D VL +V + + R GDK + RHG KG Sbjct: 792 KENKERIMSYKDGEDGFVDKVITTTSDDGKRVLSVV-LKFRMVRTPTIGDKFSSRHGQKG 850 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V S P E+MP+ ENG D+++NP PSRM IG ++E+ G Sbjct: 851 VFSFPWPQENMPFCENGITPDVIINPHAFPSRMTIGMLIESMCGKLR------------- 897 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + D + F+ +E R+ E Sbjct: 898 -----------------ASQDCAFFDATPFTHDEKNRIT-------------------DE 921 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 + ++L G +Y G TGEQF+ + +G +Y +L H+V DK R+TG + + Sbjct: 922 VGQMLAKEGFEYYGNEAMYSGITGEQFKADIFMGVVYYQRLRHMVGDKYQVRATGKMNNI 981 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------------------ 1296 T+QPL G+ + GG R GEME L A G + L++ SD Sbjct: 982 TRQPLKGRKKGGGIRLGEMERDGLLAQGVTFLLRDRFMWCSDGHVAKLCNRCGSFMFTQT 1041 Query: 1297 --DVNGRTKMYKNIV-DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 D NG + Y + +P L E ++ I ++ E Sbjct: 1042 KHDENGVEETYCTYCKKSGNCTSVYVPYVLRYLCAEFAAMNIRMKFSTE 1090 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 108/581 (18%), Positives = 202/581 (34%), Gaps = 105/581 (18%) Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 R+L + + D +I + ++L+ + G+ D++D + + G + Sbjct: 303 LKRNLFPHLSDEAPSKKFDLLIYMTRRLLQLVKGEILPDNMDANSAHELLTPGTLWLPAL 362 Query: 465 RVGLVRVERAV------KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS--------Q 510 + +A E+ ++ D D L NA + ++ F + Sbjct: 363 SDAITDFLKATAANVYKDEKNAIDDFDALQTILKKNASGVENRMRYLFSTGSLRGNSTLG 422 Query: 511 LSQ------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 LSQ ++ N + H R ++ G VR + P +G +CP+ TP Sbjct: 423 LSQTEGLSIIAERINYCRYLAHFR---SVHRGAFFTTMKTTAVRYLLPESWGFMCPVHTP 479 Query: 565 EGPNIGLINSLSVYAQT---NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 +G GL+ L+ + + + GF E G+V +L + + VI Sbjct: 480 DGGLCGLLTHLARFCEIVTGDSQGFKEIVQIFTNYGMVP----FLGSG-DMVPVIVDGRV 534 Query: 622 NLDEEGHF----VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 VE L T R KG + +++ S S+ FL Sbjct: 535 VGSIRERLSSAAVEALKTARRKGIIPKMA-------EIADLPAGSFTRSIYVFLNQQRMM 587 Query: 678 RALMGANMQRQ--AVPTLR-----ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 R + Q Q A P + A P + R + + ++ +A + D + Sbjct: 588 RPVFNVKAQEQEYAGPLEQIFMDIASNPKDESKAYREIHHTAMLSLIASLT---PFSDYN 644 Query: 731 RIVIKVNEDEM------YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 + + + +M YP + Y Q P V E Sbjct: 645 QSPRNMYQCQMAKQTMGYPSHREAASTEVKTYHVH-----YPQRPIVRTMEQ-------- 691 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 D + + + LG N VA + + GY+ ED++L+++ V+ C+ + + Sbjct: 692 DSHALE--DFLLGTNACVAVLSYTGYDMEDALLINKCSVERGFG-------HGCIYKTHR 742 Query: 845 LGPEEITADIP--NVGEAAL--SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 EEI ++ N + + LD G+ ++G V+ G K Sbjct: 743 YTAEEIESNSYFCNTKDGVIVDPDLDADGLPFVGQRVSKG------------------CK 784 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 LLR ++ K + + S + +G G V V T D ++ Sbjct: 785 LLR-VYNPKENKERIMSYK--DGEDGFVDKVITTTSDDGKR 822 >UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSV4_ENTBH Length = 1138 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 134/336 (39%), Gaps = 62/336 (18%) Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 + K + ++ I + K KV + R Q GDK A RH KGV Sbjct: 855 NPFYLFKDTSTLIRKTEQGNIDKVIVTTKDGYKFTKVKVRSMRIPQMGDKFASRHAQKGV 914 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 + EDMP+ +G D+++NP +PSRM IG + Sbjct: 915 VGITLKQEDMPFTSDGLIPDVIINPHAIPSRMTIGHLF---------------------- 952 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA-KEAE 1194 E ++ L ATP + E Sbjct: 953 -------------------------------EALLGKLTTLNGIEGDATPFANKPQTIDE 981 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 I + L G ++ G TG + + + +G Y +L H+VDDK+HAR+ G ++ Sbjct: 982 ISKELAKYGYQKRGFEIMHSGATGYKLKSQIFIGPTYYQRLKHMVDDKLHARARGPLQIM 1041 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV----- 1309 T+QP+ G+++ GG RFGEME + ++GA+ L+E L SD ++ Sbjct: 1042 TRQPVEGRSREGGLRFGEMERDCIISHGASAFLKERLMDVSDVYTCGVCDNCGLICNNNC 1101 Query: 1310 ---DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P +F +L++E++ + I + ++ + Sbjct: 1102 TGCNNSTISNINIPYAFKLLIQELQGMNIFMRIQTQ 1137 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 152/851 (17%), Positives = 282/851 (33%), Gaps = 131/851 (15%) Query: 183 WLDFEFDPKDNLF---VRIDRRRKLPA-TIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 W++ D K + + +D + + L + + L +K + + Sbjct: 114 WVNMFIDVKKAYYENGIEVDVSKTIRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYD 173 Query: 239 MELVPERLRGETASFD---IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 GE I N +K + + ++ ++P + Sbjct: 174 QGGYFIITGGEKVIVAQERIATNMVHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKV 233 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE--TLFTNDLDHGPYISETLRV 353 V I S + L + L + K I + ND + Y+ +L Sbjct: 234 VKNLRVIRAS---INLVKQDIPVLIIFRALGFNSDKEILSYIQYDNDKELNEYLLNSLEE 290 Query: 354 DP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 D+LSAL I + P + ++ F ++ L +G+ Sbjct: 291 ASCIQDQLSALDFIGKRSAP--IGSPKSKRIDFAKQILIKE--FLPHIGQQ--------- 337 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 E + ++ K++ + GK +VDD DH G +R+ G + N F+V ++ Sbjct: 338 --EFCETKKAYFLGYMINKILLVITGKRDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLL 395 Query: 473 RAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQ 517 + L + + + + I+ K + +Q + + Sbjct: 396 TETTKYLQKCVENNREFNLTIGLKSSIITQGFKYALATGNWGHQEKAMSTRAGVAQVLSR 455 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N LS ++H RR++ + +E R +H TH+G +CPIETPEG GL+ +LS+ Sbjct: 456 YNFLSTLSHLRRVNT----PIEKEGKLAAPRQLHNTHWGMICPIETPEGHACGLVKNLSL 511 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 A + + + + + L L R Sbjct: 512 MAYISVGK---------SSNQIIEILEELGVERLEEIEYIYGTKILVNGAWIGVTSDPVR 562 Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF-LEHDDANRALMGANMQRQAV------ 690 F R ++S + + + I + R L V Sbjct: 563 IVQILKKFRRHGEIDSEISI--IFDIKENEIKINSDAGRPCRPLFIVENNELLVNKQDIE 620 Query: 691 ----------PTLRADK-----------PLVGTGMERAVAVDSG--------VTAVAKRG 721 ++ K L+ G+ + + Sbjct: 621 DLKNIKIKWDDLIKNGKIELLDIEEEEVSLIAMGLNDLKDTNKQYTHCEIHPAIILGITA 680 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR----SNQNTCINQMPCVSLG--E 775 V+ + + + M G+ + IY+ + R SN C Q P VS E Sbjct: 681 SVIPFPTHNPSPRNTYQSAM--GKQAMGIYSTNFFKRMDTLSN-ILCYPQKPLVSTKSME 737 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 ++ EL GQN VA ++GYN EDSI++++ + F + + Sbjct: 738 YIK------------FKELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRT 785 Query: 836 LACVSRDTKLG-PEEI----TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + + G E+I + I + L GIV G +V G D+++GK+TP Sbjct: 786 YSDQEKMKYTGVNEKICKIERSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGKMTPI 845 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK---RALE 947 + + ++ G KD+S + G + V V T+DG + K R++ Sbjct: 846 LDVE--------KSTPGNPFYLFKDTSTLIRKTEQGNIDKVIVTTKDGYKFTKVKVRSMR 897 Query: 948 IEEMQLKQAKK 958 I +M K A + Sbjct: 898 IPQMGDKFASR 908 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 100/275 (36%), Gaps = 54/275 (19%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSY 73 ++ D L+ QLDSF +F++ + E + SV I + + E + Y Sbjct: 21 NWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIID-ENSIISVKSIPTAGNSIEREIKLY 79 Query: 74 R-----LGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 LG P+ E ++R +TY + + ++ YE K I+ Sbjct: 80 FGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYYENGIEVDVSKTIR 139 Query: 119 EQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPG 154 V G +P+M + G F+I G E+VIV+Q + Sbjct: 140 ---VPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVIVAQERIATN 196 Query: 155 VFFDSDKGKTHSSGKVLYNARI--IPYRGSWLDFEFDPKDNLFVRIDR------RRKLPA 206 + K Y A I + GS L F K +R+ R ++ +P Sbjct: 197 M---VHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKVVKNLRVIRASINLVKQDIPV 253 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 II RAL + +++ + + + + + L L Sbjct: 254 LIIFRALGFNSDKEILSYIQYDNDKELNEYLLNSL 288 >UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeota RepID=B5IGJ5_9EURY Length = 1201 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 100/423 (23%), Positives = 170/423 (40%), Gaps = 93/423 (21%) Query: 938 GVEKDKRALEIEEMQLKQAKKDLS--EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 G ++DK + +++ + +E ++ ++ + VL+ L++ Sbjct: 847 GGQEDKFEIPSPDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEEES-- 904 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 EL + +++ + E+ + E R +VKV + Sbjct: 905 ---ELLGPQKRRESSVTMRPEEEGWVDSVLLTVSENNSR--------------LVKVKVR 947 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 +R + GDK A RHG KGV+ I P EDMP+ E+G D+++NP +PSRM +G ILE Sbjct: 948 DQRIPELGDKFASRHGQKGVVGAIIPQEDMPFTESGIIPDLIINPHAIPSRMTVGHILE- 1006 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 IG K+ ++ Sbjct: 1007 -------MIGGKVGSL-------------------------------------------- 1015 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 +G + VF G E ++E L +G+ +YDG TG + E + VG +Y KL Sbjct: 1016 --EGRFVDGTVFSGEPEKALREALVKNGFKYNGKEIMYDGITGRKIEAEIFVGVIYYQKL 1073 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 +H+V K HARS G ++T+QP G+++ GG RFGEME L +GAA +++ L S Sbjct: 1074 HHMVAGKFHARSRGPVQILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNS 1133 Query: 1296 D------------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 D D + + +F ++ E+ SLG+ + Sbjct: 1134 DGTVLYVCGNPECGHIAMFDRKRGILRCPVCGNTTNIYPIETSYAFKLMHDELASLGVIM 1193 Query: 1338 ELE 1340 ++ Sbjct: 1194 RMK 1196 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 100/534 (18%), Positives = 203/534 (38%), Gaps = 53/534 (9%) Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 + LD + K ++E V E F I + +V V R + Sbjct: 158 NIDDYLDSISKDKDILNWPYKQKLEYVGEDPDDPGGYFIIGGSERVLVSLEDLAPNRVLV 217 Query: 276 QLEKDDVKLIE---VPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 + + ++E V + + + ++ + ++ L+ + G ++ Sbjct: 218 EKNERYNTVVETAKVFSQRRGYRALTIMEKKSDGIIVVSVPAVAGTIPLVILMKALGLEK 277 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE 392 + ++ + L N VE ++ P T+ A E F + Sbjct: 278 DQDIYRAIVSDEKMSVIALA----NIEE---VENDKLYPPNGIRTQRDAIEYLEKRFAAG 330 Query: 393 DRYDLSAVGRMKFNRSLLRE---EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 + + S L + I + + ++++++ G + DD DHL Sbjct: 331 QAKEYREKKISQILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLELHLGLRKEDDKDHLA 390 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-------DLDTLMPQDMINAKPISAAV 502 N+R++ G++ E FR+ + + +K +L + + QD++ K + A Sbjct: 391 NKRLKLSGDLLEELFRMAFEALMKDLKYQLERTYNRKKGIRIRVSIRQDVLTQKIMHAMS 450 Query: 503 KEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 + G + +SQ +D+ + +S ++H RR+ + LTR + FE RD+HPT +GR+CP Sbjct: 451 TGNWVGGRTGVSQLLDRTSHMSTLSHLRRVIS----PLTRSQPHFEARDLHPTQWGRLCP 506 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN 620 ETPEG N GL+ + ++ +E G+ E K+ G+ +E Y + Y+ Sbjct: 507 NETPEGQNCGLVKNAALIIDVSE-GYPEEDVLKILKGLGVEERQYETGELARVYLNGNLV 565 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD-ANRA 679 + ++ + R KG ++S + + +DD N Sbjct: 566 GYHKDGLALTNEIRSRRRKG-------------------LISHQIN----IRYDDTTNEV 602 Query: 680 LMGANMQRQAVPTLRADKPLV--GTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 ++ ++ R P L + V + + R GVV+++DA Sbjct: 603 MINSDKGRIRRPLLVVENGNVKYTSRHRELLRRGKMDIEDLVREGVVEWIDAEE 656 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 19/174 (10%) Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 GQN VA + ++GYN +D+I++++ V+ + + R G E+ +I Sbjct: 797 PAGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYPGGQED-KFEI 855 Query: 855 PN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 P+ + E LDE G++ V GGD+L+GK +P + E +LL Sbjct: 856 PSPDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLE--EESELL------ 907 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDG----VEKDKRALEIEEMQLKQAKK 958 ++SS+ + G V V + + V+ R I E+ K A + Sbjct: 908 GPQKRRESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASR 961 >UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AT93_BABBO Length = 1283 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 153/390 (39%), Gaps = 46/390 (11%) Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + L G +K + R E + Q+ E+Y + ++ Sbjct: 905 KDGLPNVGARVKKGTPICRIESHEKVGGSK----QISDRVEKYHDEDAIVDQVTIIGCND 960 Query: 1036 ITQGDDLAPGVLKIVK--VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 + + +K + + + R GDK A RHG KG++S P E+MP+ E+G Sbjct: 961 ASVAEMPNASNIKGTRATIKFRIVRNPIVGDKFASRHGQKGILSMAWPAENMPFLESGII 1020 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIG--DKINAMLKQQQEVAKLREFIQRAYDL 1151 DI+ NP G+PSRM IG+++E G +A G K +++A ++I Sbjct: 1021 PDIIFNPHGLPSRMTIGKLIECMAGKSAAIHGAFQDATCFRKYPKQMATGNKWIDHGGLK 1080 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 G + R +S +EE+ + +++ + L G Sbjct: 1081 GWEERGFRYMSK--EEELSKTEDDV---------------IDYFGKTLLQAGYDYYGTES 1123 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 +Y G G + + +G ++ +L H+V DK R+TG +T+QP+ G+ GG RFG Sbjct: 1124 MYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKAQVRATGPVDAITKQPVKGRKNRGGIRFG 1183 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG------------- 1318 EME +L A+GA+ LQ+ L SD + G Sbjct: 1184 EMERDSLIAHGASALLQDRLIHCSDAHTAYVCPNCGSIISATVTSVGATNKRSVSHCRIC 1243 Query: 1319 --------MPESFNVLLKEIRSLGINIELE 1340 +P + E+ S+ + I L Sbjct: 1244 KVACKLVTIPYVLRYVAHELASINVGIRLH 1273 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 91/537 (16%), Positives = 175/537 (32%), Gaps = 91/537 (16%) Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 F + +V + ++L + + E SS L+ ++ N Sbjct: 457 FSYAVEKVASDIPKKL----------HSFLATGNATNMHFELTQSSGLTVVAERINYHRF 506 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++H R +L G L + EVR + +G +CP+ TP+G GL+ L+ YA Sbjct: 507 MSHFR---SLHRGSLFAKMRSTEVRKLLGETWGFICPVHTPDGAPCGLLLHLAQYAVPVT 563 Query: 584 YGFLETPYRKVT--------------DGVVTDEIHYLSAIEEGNYVIAQA----NSNLDE 625 E V VTD + + + + +VI ++E Sbjct: 564 ATDCEGAAEAVKSLLRTHGYSVDFTGHETVTDFVTHDAQHIKRIHVIVDGVPMCTLPINE 623 Query: 626 EGHFVEDLVTCRSKGESSLF-SRDQVDYMDV----STQQVVSVGASLI-PFLEHDDANRA 679 +++ + G+ L + V DV ++ +++ +I P + Sbjct: 624 APKLYDEIKLAKRYGKFGLKEHYEIVASPDVKGEYTSIMILTYPGRVIRPVICLTSGEIE 683 Query: 680 LMGANMQRQAVPTLRAD-----KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA----- 729 +G Q + + + +V + E S A+ V Sbjct: 684 WIGPITQLWSTIAVSEEEARISHQMVASNAEGKCKTLSIDEALMHDNSSDHAVSPVKKVI 743 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADG 786 + +K + E+ P LT ++ NQ N QM S+G P +D Sbjct: 744 DNVPVKYDYMEVSPSAILSVTAALTPFSNHNQSPRNMYQCQMLKQSMGVPYHCEQFRSDV 803 Query: 787 PS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 + + + G N VA + G++ ED++++++ + F Sbjct: 804 KAYRLLFPQKPLVTTTEFRQMNYEDYPTGMNAVVAVIAHTGFDMEDAMIINKSSLDRGAF 863 Query: 829 TTIHIQELACVSRDTK---LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 + + G + A+ ++G ++ LD+ G+ +GA V G Sbjct: 864 HGCIYKSKVIDAMPANGRSRGNQHYFANTNHLGSKIIASLDKDGLPNVGARVKKG----- 918 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP--NGVSGTVIDVQVFTRDGVE 940 TP + EK K S RV + V V + + Sbjct: 919 --TPICRIES-----------HEKVGGSKQISDRVEKYHDEDAIVDQVTIIGCNDAS 962 >UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4N2L4_THEPA Length = 1235 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 168/437 (38%), Gaps = 77/437 (17%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + +V + + KD ++ L+ R+ L Sbjct: 842 IYKSKVIDLNSQASSTKERGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGEKLTKNS---- 897 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 P R E G K N + +Y E ++ + +IT GD ++ L Sbjct: 898 -----PFYRIEERG-----KNNIVNDKVVKYTEEPAIVDQITLVGKSEITVGDKISCPGL 947 Query: 1048 KIVK--VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 K + + L V R GDK A RHG KG++S + P EDMP+ ENG D++ NP G+PS Sbjct: 948 KHDRAIIKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHGLPS 1007 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM IG+++E G K+ ++ + Q+ + + + G + ++VD+ + Sbjct: 1008 RMTIGKLIEGMAG--------KVASIYGKPQDSTCFQAYYSENPENGDEEMEEVDVVDYF 1059 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 + L G +Y G G + + + Sbjct: 1060 GKS------------------------------LIKSGYEYYGTESMYCGTLGTEIQTHI 1089 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 VG +Y +L H+V DK RSTG +T+QP+ G+ GG RFGEME AL A+G A Sbjct: 1090 FVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQPVKGRKNLGGIRFGEMERDALIAHGTAN 1149 Query: 1286 TLQEMLTVKSDDVNG----------------------RTKMYKNIVDGNHQMEPGMPESF 1323 LQ+ L SD R I N ++ +P Sbjct: 1150 LLQDRLLHCSDAHMAYVCPKCGSILSPSISSLEANTKRQVSICTICQVNCKL-VTIPYVL 1208 Query: 1324 NVLLKEIRSLGINIELE 1340 + E+ ++ I I+L Sbjct: 1209 RYVANELATMNIGIKLH 1225 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 97/609 (15%), Positives = 210/609 (34%), Gaps = 154/609 (25%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNR----------------------RIRSVGEMAEN 462 ++ + KL+++ NG + + D + RIR+V + N Sbjct: 344 LLFMFNKLVNLSNGNIQSESYDSFAFQELLLPGQSYSCILKESLYLSLTRIRTVYNLEIN 403 Query: 463 QF------RVGLVR----------VERAVKERLSLGDLDTLMPQDMINAKP---ISAAVK 503 F + G R +++ ++E + ++++ + K I+ V Sbjct: 404 NFLNHLKGKRGFKRNYAGVGKLENLDQDLEEEMVRKFMNSVNLFNFAINKVAPEITKKVH 463 Query: 504 EFFGSSQ-------LSQ------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 F + L+Q +D+ N +H R ++ G + + +VR + Sbjct: 464 HFLSTGNAFNTHYELNQNTGFALVLDRINYHRFSSHLR---SVHRGNIFMKMRSTQVRKL 520 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQT----NEYGFLETP--YRKVTDGVVTDEIH 604 +G +CP+ TP+G GL+ LS YA+ N+ +L + + K ++ + Sbjct: 521 LGETWGFICPVHTPDGAPCGLLLHLSQYAKPVTTPNKPSYLNSIKSFLKSQPLHISGSTN 580 Query: 605 YLSAIEE------GNYVIAQANS-------NLDEEGHFVEDLVTCRS------KGESSLF 645 ++ + I+ N + + +E CR + + +F Sbjct: 581 KVNGGNDRIPLVVDGIPISYVNLEDVEEFYDKLKTSKNLEKFGMCRHFETCAIRDKFGVF 640 Query: 646 SR-------------------DQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL-MGAN- 684 S +Q++ + Q+ S ++ + + N+ L + AN Sbjct: 641 SSIYIMTFPGRLVRPVRNIKDNQIELIG-PITQLWS-TIAINEYELNKSHNKLLDLQANP 698 Query: 685 --MQRQAVPTLRADKPLVGTG---------MERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 M + VP KPL + V +D ++ + + + ++ Sbjct: 699 SAMNKVQVP-----KPLKSLKDNELDNCPVLYEYVELD-MCCILSLSASLTPFSNHNQSP 752 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN---QMPCVSLGEPVERGDVLADGPSTD 790 + + +M + + I +++ RS T + Q P V+ E + G Sbjct: 753 RNMYQCQML--KQSVGIPFHSQFYRSEVKTYVLTSLQRPLVATKEYEKMG---------- 800 Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR------DTK 844 + G N VA + +G++ ED++++++ V F + + + Sbjct: 801 FQDYPTGVNCVVAIIAHSGFDMEDAMILNKASVDRGLFNSFIYKSKVIDLNSQASSTKER 860 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 G E ++ + + KLD G+ +G K+T K EE+ Sbjct: 861 GGTVEYFNNMDKDSKLIVKKLDFDGLPRLGE----------KLT-KNSPFYRIEERGKNN 909 Query: 905 IFGEKASDV 913 I +K Sbjct: 910 IVNDKVVKY 918 >UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lunularia cruciata RepID=Q1L6W1_9MARC Length = 789 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 99/471 (21%), Positives = 165/471 (35%), Gaps = 90/471 (19%) Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 IF + + V + N ++D R G+ + + + + + Sbjct: 374 IFSGQNAIVAIACYTGYNQEDSIIMDQSALDR-GMFRTQHYRTFKSEERSDHETFGKPSA 432 Query: 965 QILEAGLFS-RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 G + R +L G+ + D + +T +K Q A D Sbjct: 433 ADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGKIVTHSQKNTQSADSARLVDTSTR 492 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + + I D+ KI KV L R Q GDK + HG KG++ + E Sbjct: 493 LKAHEKGRVEQVILVQDEEGK---KIAKVKLRETRIPQVGDKFSRMHGQKGIVGMVFTQE 549 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 D+P+ G DI++NP PSR +GQ+ Sbjct: 550 DLPFTNEGIVPDIIINPHAFPSRQTLGQMC------------------------------ 579 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 E + A R ATP + I E L Sbjct: 580 -----------------------ESALGKAIAKRGEQLFATPFNPASTVESITEALHESG 616 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G +Y+G TG+ + +G + +L H+V+DK+ RS G +T+QP+ + Sbjct: 617 YNGWGMETMYNGYTGKAMVAKIFIGSTFYQRLTHMVEDKIKYRSRGHVHPLTRQPVSDRK 676 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMYKNI----------- 1308 + GG +FGEME L A+GAA TLQE SD + K ++ Sbjct: 677 RHGGVKFGEMERDCLIAHGAAATLQERTFHLSDYHEIHICRSCKQMAHMGIDRIPTCRFC 736 Query: 1309 -----------------VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ +P + +L++E++S+GI++ L+ E Sbjct: 737 KEKNKKVVKGKKTDKTETKVEEIVKVEIPYACKLLIQELQSMGISVGLDTE 787 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 92/556 (16%), Positives = 196/556 (35%), Gaps = 96/556 (17%) Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFF------GSSQLSQFMDQNNPLS 522 R+++ + + L +D + +I ++ + +S + + ++NP+S Sbjct: 10 KRLQKHLSKNQELSSIDKYVEDKVITRGFRNSFSSGNWMGHDLMKNSGIVFDLKRSNPIS 69 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 + R + P + + G + R + +GRVCPI+TP+G GL+ ++++ + Sbjct: 70 TLCQLRELRQYVPPTV---KVGEDARHPTFSQWGRVCPIDTPDGEACGLVKNMALTGIVS 126 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN---LDEEGHFVE-------- 631 G E P + + +++ G + N + + HF Sbjct: 127 SAGT-EAPVIDFLESNGMIPLESVTSDTLGMVMKVFVNGRWLGVVKHTHFEPIIKGLRAL 185 Query: 632 ------------DLVTCRSKGES-------------SLFSRDQVDYMDVSTQQVVS---- 662 ++V R K E + ++++ S Q +S Sbjct: 186 RKRPPTAELYQMEVVIIRPKFEIQVSTDSGRVLRPLLVVRHNKMNLNQDSVTQYISEKRG 245 Query: 663 -VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT------ 715 FL+ L+G + +A+ L G++ V+ Sbjct: 246 LPHERFTWFLQKHVIE--LLGVEEEEKALIALHGADLEKANGLQSRKTVEFSHAEIHPSL 303 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 + V+ + ++ + + + + I +Y R++ + P V Sbjct: 304 ILGLSASVIPFPHRNQSSRNLFQAHKHS-KQAIGVYVTNLACRADTSGQHLFYPQVQ--- 359 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 + + +++ E+ GQN VA + GYN EDSI++ + + F T H + Sbjct: 360 -LVKTNIVN---CLQKDEIFSGQNAIVAIACYTGYNQEDSIIMDQSALDRGMFRTQHYRT 415 Query: 836 LACVSRDTKLGPEEITADIPNVGEA-----ALSK---LDESGIVYIGAEVTGGDILVGKV 887 R + T P+ + A+ L++ G+ YIG + D++VGK+ Sbjct: 416 FKSEERS-----DHETFGKPSAADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGKI 470 Query: 888 -TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK----D 942 T + + + L D+S R+ G V V + + +K Sbjct: 471 VTHSQKNTQSADSARLV-----------DTSTRLKAHEKGRVEQVILVQDEEGKKIAKVK 519 Query: 943 KRALEIEEMQLKQAKK 958 R I ++ K ++ Sbjct: 520 LRETRIPQVGDKFSRM 535 >UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophyta RepID=Q9LK40_ARATH Length = 1172 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 99/433 (22%), Positives = 170/433 (39%), Gaps = 75/433 (17%) Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE--KLDKLPR 994 D + +K +LE M + + E+ ++ ++ ++ G ++ K+D L Sbjct: 786 DSIVMNKASLE-RGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLED 844 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 D + +G + + E +K + ++ ++ ++ D+ V Sbjct: 845 DGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDE----GKNFAAV 900 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L R GDK + HG KGV+ + ++ P+ G DIV+NP PSR GQ+ Sbjct: 901 SLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQL 960 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 LE L +KGI I + Sbjct: 961 LEAAL---SKGIACPIQ-----------------------------------KEGSSAAY 982 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 + R P +TP EI E L G R+Y+GR+GE + +G + Sbjct: 983 TKLTRHATPFSTP-----GVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFY 1037 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E L Sbjct: 1038 QRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLF 1097 Query: 1293 VKSDD----VNGRTKMYKN-------------------IVDGNHQMEPGMPESFNVLLKE 1329 SD + + K Y N V +H + +P +L +E Sbjct: 1098 TLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQE 1157 Query: 1330 IRSLGINIELEDE 1342 + S+GI + + + Sbjct: 1158 LFSMGITLNFDTK 1170 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 181/999 (18%), Positives = 333/999 (33%), Gaps = 242/999 (24%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQ 86 L+S QL+S+ FIE GL+ F+S G L EP FDV + + Sbjct: 48 LISHQLNSYNYFIEH------GLQNVFQSF-------GEM--------LVEPSFDVVKKK 86 Query: 87 IRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL------MTDNGTFVING 140 Y+ VK V E+ K+++ +P MT + Sbjct: 87 DNDWRYAT---VKFGEVTVEKPTFFSDDKELEF-------LPWHARLQNMTYSA------ 130 Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 R+ V+ F + K+ F+ + + +I Sbjct: 131 --RIKVNVQVE----VFKNTVVKSD-------------------KFKTGQDNYVEKKILD 165 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 +K I++ ++ + IL EK + + + F I+ K Sbjct: 166 VKKQ--DILIGSIPVMVKSILCKTSEKGKENCKKGDCAFD--------QGGYFVIKGAEK 215 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIE-----VPVEYIAGKVVAKDYIDESTGELICAANM 315 V++ + + T R V + ++ A+DY + + Sbjct: 216 VFIAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLST 275 Query: 316 ELSL-DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL--------SALVEI 366 E+ + L L S K L D D + + D + +AL + Sbjct: 276 EIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYV 335 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 + ++ + P E+ + F G + + Sbjct: 336 EQQIKSTKFPPAESVDECLHLYLFP---------GLQSLKKK-------------ARFLG 373 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL----VRVERAVKERLSLG 482 ++K L++ GK + ++ D N+RI GE+ E + RV L ++ RA+++ LS G Sbjct: 374 YMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLS-G 432 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRR 529 D D + ++A I+ + F + S + + NPL + RR Sbjct: 433 DGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRR 492 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF--- 586 + + R HP+H+GRVC + TP+G N GL+ ++S+ + Sbjct: 493 ----TRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESV 548 Query: 587 LETPYRKVTDGVVTDEIHYL----SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 +E + + ++ D L + G++V A+S FV +L + R + E Sbjct: 549 VEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSE-----SFVAELKSRRRQSEL 603 Query: 643 SL---FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ--RQAVPTLRA-- 695 RD+ D ++ + L+ L+ N+Q +Q P+ Sbjct: 604 PREMEIKRDKDDN----EVRIFTDAGRLL--------RPLLVVENLQKLKQEKPSQYPFD 651 Query: 696 -----------------------------DKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 +P + T E ++ GV+ VV + Sbjct: 652 HLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSC-----AVVPF 706 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVL 783 + +V + I + R + Q Q P L Sbjct: 707 ANHDH-GRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPL---------FKTL 756 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL--ACVSR 841 A L GQN VA GYN EDSI++++ ++ F + I+ ++ Sbjct: 757 A-SECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAK 815 Query: 842 DT---KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 D+ K E + + + L++ G +IGA ++ GDI++G+ T G Sbjct: 816 DSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG------- 868 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 D S+++ + G V V + + D Sbjct: 869 ---------------ADHSIKLKHTERGIVQKVVLSSND 892 >UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y3J9_CLAL4 Length = 1232 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 104/482 (21%), Positives = 160/482 (33%), Gaps = 123/482 (25%) Query: 921 PNGVSGTV----------IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 PNG++ V D + + E+ + +++ I + Sbjct: 804 PNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLSLSRRRGDPITQHF 863 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFE 1026 F + +KL D +G+ EE E L + + H E Sbjct: 864 GFG-------SDEWPETWKEKLDDDGLPLIGVKVEEGDPIVAYFDETLGKTKIKTYHSSE 916 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 + + + DD + + + V R GDK + RHG KGV S+ P DMP Sbjct: 917 PAYIEEVKLL--ADDTGDSECQQITIKYRVTRAPLIGDKFSSRHGQKGVCSRKWPTVDMP 974 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 Y E+G D+++NP PSRM IG +E+ G A G ++ + E +F Sbjct: 975 YSESGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFSEDDTPADF-- 1032 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 E LKL Sbjct: 1033 ------------------------------------------------FGEQLKLAGYNY 1044 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 G +Y G TGE+ + +G +Y +L H+V+DK RSTG + +T QP+ G+ + G Sbjct: 1045 HGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHG 1104 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSD------------------------------ 1296 G R GEME AL +G AY LQ+ L SD Sbjct: 1105 GIRVGEMERDALIGHGTAYLLQDRLLNSSDYAQTPICRSCGSLLNTQMSVPRIGSLASVK 1164 Query: 1297 --DVNGRTKMY------------------KNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 + + Y V G +P L E+ ++GI Sbjct: 1165 CRSCADKLETYIKKGEYVNEADIWEDGSGTKFVGGADTTTVAIPFVLKYLDSELTAMGIK 1224 Query: 1337 IE 1338 + Sbjct: 1225 MR 1226 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 106/645 (16%), Positives = 199/645 (30%), Gaps = 108/645 (16%) Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 G +T + D + T + + + S L + R T + ++ Sbjct: 334 DGIVAADTSNSFLTDRLELLLRTYKQYNLHSQKSTLAYLGDKFRVAFGATPDVSD----- 388 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 VGR R +L + + ++ ++KL + G D+ D Sbjct: 389 ----------IDVGREVLKRIVLVHLPDNADKFR--LLLFSIRKLYTLVAGDCAPDNPDA 436 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLS----------LGDLDTLMPQDMINAKP 497 ++ + G + + + + +K ++S D + M + Sbjct: 437 TQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQISSDIGRGVRVNFNDRKYMSRVFMRTNEN 496 Query: 498 ISAAVKEFFGSSQ-LSQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERA 543 I ++ F + +SQ ++ N I+H R + G E Sbjct: 497 IGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFR---MVHRGSFFAELK 553 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 VR + P +G +CP+ TP+G GL+N L+ Q + + Sbjct: 554 TTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCQIATKASDVSAVPAALARLGVSPA 613 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV-- 661 H +A + +G V E D + V + Sbjct: 614 HTFAA--------GPGLCCVHLDGKIVGWT-----SHEQGRIVADSLRLWKVQGLHNLPK 660 Query: 662 SVGASLIPFLEHDD-ANRALMG--ANMQRQA--VPT-----------LRADKPLVGTGME 705 + +P L G + M R A +P + + + +E Sbjct: 661 DLEIGYVPPSSKGQYPGLYLFGGHSRMMRPAKYLPLDKEDILGPFEQVYMNIAVTPAEIE 720 Query: 706 RAVAVD---SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 V + ++ + + D ++ + + +M G L RS+ Sbjct: 721 ENVHTHVEFAPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALV--HRSDNK 778 Query: 763 TC---INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 Q P V L D D G N VA + + GY+ +D+++++ Sbjct: 779 LYRLQTGQTPIVKAN--------LYDDYGMDN--FPNGMNAVVAVISYTGYDMDDAMIIN 828 Query: 820 ERVVQEDR-FTTIHIQE---LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 + + + T++ E L+ R + E KLD+ G+ IG Sbjct: 829 KSADERGFGYGTVYKVEKVDLSLSRRRGDPITQHFGFGSDEWPETWKEKLDDDGLPLIGV 888 Query: 876 EVTGGDILV-------GKVTPK----GETQLTPEEKLLRAIFGEK 909 +V GD +V GK K E E KLL G+ Sbjct: 889 KVEEGDPIVAYFDETLGKTKIKTYHSSEPAYIEEVKLLADDTGDS 933 >UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QD43_LEIMA Length = 1132 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 126/309 (40%), Gaps = 64/309 (20%) Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D + V + +KV R +PGDK + RHG KGV+ I DMP++E G D+++NP Sbjct: 872 DRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNP 931 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 G ++ K+ ++ + Sbjct: 932 H----------------GFPSRMTVGKLLELVCSKAAA---------------------- 953 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 +G F G I + L G+ Y G TGE Sbjct: 954 ----------------LRGSMGDGTAFGGESADSISQQLLSFGYNYHGKDVFYSGITGEL 997 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + V G +Y +L H+V DKMHARSTG S++T+QP G+++ GG R GEME + Sbjct: 998 MQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVG 1057 Query: 1281 YGAAYTLQEMLTVKSD----DVN------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 YGA+ L E L + SD D+ G + MP +F +L++E+ Sbjct: 1058 YGASNLLNERLLISSDMFTADICHVCGNLGYNNRCTYCKTKGTTSKVNMPYAFKLLIQEL 1117 Query: 1331 RSLGINIEL 1339 + +G+++ L Sbjct: 1118 QGMGVSLRL 1126 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 105/528 (19%), Positives = 193/528 (36%), Gaps = 78/528 (14%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLG 482 + +++ +I+ +D+ D GN+R + G + F L + R VK + L Sbjct: 343 VCFMVRGMIEASFDTSLLDERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLS 402 Query: 483 DLDTLMPQDMINAK-----PISAAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRISALG 534 D+ P ++ I ++ G L +F M++ ++ I++LG Sbjct: 403 RKDSTRPFNVKQLMESKMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLG 462 Query: 535 PGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 +TR + FE R + P+ +G VCP +TPEG + GL+ + + +Q Sbjct: 463 --MMTRLASSFEKTRKVSGPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVT-LDLN 519 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT-CRSKGESSLFS 646 + R + +EI ++ + +Y N L + L R+ S Sbjct: 520 DNYVRAAAHALGVEEIDTVTPTDFLHYCTVFLNGTLIGIHRYPNRLCAGIRTLRRSGRLH 579 Query: 647 RDQVDYMDVSTQ------QVVSVGASLIPFL-EHDDANRALMGANMQRQAVPTLRADKPL 699 ++ +STQ Q+ S G ++ L D A+ A++ R L Sbjct: 580 P----HVSISTQPRQRTVQIGSDGGRIVRLLIIVRDGKPAVTSAHLDRLR-DRLCTHNDF 634 Query: 700 VGTGMERAVAVD-SGVTAVAKRG----------------------GVVQYVDASRIVIKV 736 + G+ V V+ S +A G++ Y ++ Sbjct: 635 LAEGLTEYVDVNESNDCLIAVYPADIGPYTTHLEVEPLSLLGVVAGIIPYPHHNQSARNT 694 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 + M G+ + L +Y R++ + P P+ R + T +L Sbjct: 695 FQSAM--GKQALGTVALNQYIRADTVLLLGAYPQ----RPLCRTKAM---SLTHYEKLGA 745 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT-------TIHIQELACVSRDTKLGPEE 849 G N V M ++GY+ ED+ + ++ + + +++ A D L PE+ Sbjct: 746 GINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDVILPPEK 805 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 N G L+ G+ GA V D+LV K TP P Sbjct: 806 ------NSGTGKFKALNPDGVAGKGALVQQYDVLVNKFTPVAGGDPRP 847 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 41/171 (23%) Query: 78 PVF-DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT----- 131 P QEC+IR +TY + V ++ +R + E++V +G IP+M Sbjct: 90 PKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRA-----MLVEKDVKIGTIPIMLKSKCC 144 Query: 132 -------------------DNGTFVINGTERVIVSQLHRSPG-VFFDSDK---GKTHSSG 168 G F+I G E+V + Q +S V ++D+ H Sbjct: 145 NLYRKTREELVNMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADEHGNISAHVQS 204 Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ 219 K Y+ F + +P ++L+AL +Q Sbjct: 205 KTHYSISKCA-------VTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQ 248 >UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 Tax=Fungi/Metazoa group RepID=RPA2_YEAST Length = 1203 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 97/397 (24%), Positives = 145/397 (36%), Gaps = 64/397 (16%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + + + + + I + F E Sbjct: 783 MDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDE-------WPKE 835 Query: 988 KLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 L+KL D +G EE + L + + H E + I GD+ Sbjct: 836 WLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLI--GDESN 893 Query: 1044 P-GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 L+ V + ++R Q GDK + RHG KGV S+ P DMP+ E G DI++NP Sbjct: 894 KFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHA 953 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 PSRM IG +E+ G A GA D + Sbjct: 954 FPSRMTIGMFVESLAGKA-------------------------------GALHGIAQDST 982 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + E D E L G +Y G TGE+ Sbjct: 983 PWIFNE-------------------DDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELR 1023 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + VG +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 1024 ADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHG 1083 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 ++ LQ+ L SD + Q P + Sbjct: 1084 TSFLLQDRLLNSSDYTQASVCRECGSILTTQQSVPRI 1120 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 96/594 (16%), Positives = 197/594 (33%), Gaps = 71/594 (11%) Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFF----SED 393 ++ I ++ DRL L+ ++ P + + L + S D Sbjct: 284 SDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPD 343 Query: 394 RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + DL VG+ +R +L + ++ +++KL + G+ D+ D ++ + Sbjct: 344 QSDLE-VGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEV 402 Query: 454 RSVG--------EMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVK 503 G E + + + +V + +++ D + M + I + ++ Sbjct: 403 LLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQ 462 Query: 504 EFFGSSQL-SQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 F + L SQ ++ N I+H R + G + VR Sbjct: 463 YFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFR---MVHRGSFFAQLKTTTVRK 519 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY---- 605 + P +G +CP+ TP+G GL+N + + + + + + + Sbjct: 520 LLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAA 579 Query: 606 ---LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY-MDVSTQQVV 661 L ++ +I + E+G + D + R +D + Sbjct: 580 GPSLCCVQIDGKIIGWVSH---EQGKIIADTL--RYWKVEGKTPGLPIDLEIGYVPPSTR 634 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDSGV----- 714 L F H R + + ++ + P + + T E V + V Sbjct: 635 GQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPT 694 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCV 771 ++ + + D ++ + + +M G L RS+ Q P V Sbjct: 695 NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALC--HRSDNKLYRLQTGQTPIV 752 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 L D D G N VA + + GY+ +D++++++ + Sbjct: 753 KAN--------LYDDYGMDN--FPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGT 802 Query: 832 HIQELACVSRDTKLGPEEITADIP----NVGEAALSKLDESGIVYIGAEVTGGD 881 + + + IT + L KLDE G+ YIG V GD Sbjct: 803 MYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGD 856 >UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyceta RepID=B9WJL4_CANDC Length = 1166 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 98/481 (20%), Positives = 160/481 (33%), Gaps = 124/481 (25%) Query: 921 PNGVSGTV----------IDVQVFTRDGVEKDKRALEIEEMQLKQAKKD------LSEEL 964 PNG++ V D + + E+ + + + + +++ Sbjct: 741 PNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHF 800 Query: 965 QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 + L A G+ +++ D + L + + H Sbjct: 801 GFGTDEWPEAWKEKLDADGLPL---------IGVKVEEGDPIVAYYDDTLGKTKVKTYHS 851 Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 E + + + GDD + + + + R+ GDK + RHG KGV S+ P D Sbjct: 852 SEPGYIEEVKLL--GDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQID 909 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MP+ E+G D+++NP PSRM IG +E+ G A G + Q K E Sbjct: 910 MPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHG------IAQDSTPWKFNEQ 963 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 A G E L Sbjct: 964 DTPADYFG--------------------------------------------EQLLKAGY 979 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 G +Y G TGE+ + +G +Y +L H+V+DK RSTG + +T QP+ G+ + Sbjct: 980 NYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKR 1039 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG------------------------ 1300 GG R GEME AL +G ++ LQ+ L SD Sbjct: 1040 SGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMAS 1099 Query: 1301 -RTKMY----------------------KNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 R + K V G+ +P L E+ ++GI + Sbjct: 1100 IRCRRCAVSLDKYEGYAADSDIWEDGHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKM 1159 Query: 1338 E 1338 Sbjct: 1160 R 1160 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 93/570 (16%), Positives = 181/570 (31%), Gaps = 91/570 (15%) Query: 396 DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRS 455 D+S + K + + ++ +++KL + G D+ D ++ + Sbjct: 322 DMSDIEVGKEVLKRIVLVHLPNNTDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLL 381 Query: 456 VGEM----AENQFRVGLVRVERAVKERLSLG---DLDTLMPQDMINAKP---ISAAVKEF 505 G + + + L ++ ++ ++ G + D + ++ I ++ F Sbjct: 382 GGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFSRINENIGQKLQYF 441 Query: 506 FGSSQ-LSQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVH 551 + +SQ ++ N I+H R + G E VR + Sbjct: 442 LSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFR---MVHRGSFFAELKTTTVRKLL 498 Query: 552 PTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE 611 P +G +CP+ TP+G GL+N LS + V + L + Sbjct: 499 PESWGFLCPVHTPDGSPCGLLNHLSHKCKIAT--------EASDVSQVPKALTQLGVLPA 550 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV--VSVGASLIP 669 ++ + +G V E D + Y V+ + + +P Sbjct: 551 DSFAAGPNLCCVQLDGRIVGWT-----THEQGRIVADTLRYWKVNGGHGLPLDLEIGYVP 605 Query: 670 FLEHDDANRALM---GANMQRQAVPTLRADKPLVG-----------TGMERAVAVDSGV- 714 + + M R + +VG T E + S V Sbjct: 606 PSNKGQYPGLYIFGGRSRMMRPVRYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIHSHVE 665 Query: 715 ----TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQ 767 ++ + + D ++ + + +M G+ + RS+ Q Sbjct: 666 FTPTNILSILANLTPFSDFNQSPRNMYQCQM--GKQTMGTPGTALVHRSDNKLYRLQTGQ 723 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V L D D G N VA + + GY+ +D++++++ + Sbjct: 724 TPIVKAN--------LYDDYGMDN--FPNGMNAIVAVISYTGYDMDDAMIINKSADERGF 773 Query: 828 FTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + ++ + IT EA KLD G+ IG +V GD + Sbjct: 774 GYGTVYKTEKVDLSQSRRRGDPITQHFGFGTDEWPEAWKEKLDADGLPLIGVKVEEGDPI 833 Query: 884 V-------GKVTPK----GETQLTPEEKLL 902 V GK K E E KLL Sbjct: 834 VAYYDDTLGKTKVKTYHSSEPGYIEEVKLL 863 >UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax=cellular organisms RepID=Q1JNX7_STRPC Length = 249 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 124/258 (48%), Positives = 154/258 (59%), Gaps = 54/258 (20%) Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MPY +GTPVDI+LNPLGVPSRMN IG + L Sbjct: 1 MPYLPDGTPVDIMLNPLGVPSRMN---------------IGQVMELHLGMAAR------- 38 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 G+ IATPVFDGA ++ + ++ + Sbjct: 39 --------------------------------NLGIHIATPVFDGASSEDLWDTVREAGM 66 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 + + LYDGRTGE F+ V+VG MYM+KL+H+VDDK+HARS G YSLVTQQPLGGKAQ Sbjct: 67 DSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQ 126 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 FGGQRFGEMEVWALEAYGA+ LQE+LT KSDDV GR K Y+ I G +PG+PESF Sbjct: 127 FGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFR 186 Query: 1325 VLLKEIRSLGINIELEDE 1342 VL+KE++SLG+++ + DE Sbjct: 187 VLVKELQSLGLDMRVLDE 204 >UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum RepID=RPC2_DICDI Length = 1608 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 93/426 (21%), Positives = 155/426 (36%), Gaps = 83/426 (19%) Query: 927 TVIDVQVFT--RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 V+ QV + + G + R L+Q K L + I + G ++ +LV Sbjct: 1250 IVLKKQVTSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYS 1309 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 +D P + Y + ++++ + +T GDD Sbjct: 1310 PLNTIDATPNPELI-----------PDSAYKSSY--MGYKYDNPAFIDKVLLTSGDDEQ- 1355 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 ++K+ + RR + GDK + RHG KGV I EDMP+ + G DI++NP Sbjct: 1356 ---LLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPH--- 1409 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 G ++ K+ Sbjct: 1410 -------------GFPSRMTIGKM------------------------------------ 1420 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E++ + G F G + I ++L G+ + G TGE Sbjct: 1421 --IELLAGKAGVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACF 1478 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G ++ KL H+V DKMHAR+ G +T+QP G+A+ GG R GEME L YGA+ Sbjct: 1479 IFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGAS 1538 Query: 1285 YTLQEMLTVKSDDVN----------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 + E L + SD G + +P + +L +E++++ Sbjct: 1539 ALIMERLMISSDRFTVYACKNCGFLGYEGYCQYCKSSVDISTIQIPYACKLLFQELQAMN 1598 Query: 1335 INIELE 1340 I L+ Sbjct: 1599 IVPRLK 1604 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 92/247 (37%), Gaps = 29/247 (11%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L + +++++I K +DD D+ GN+RI G++ F + + +K+ + Sbjct: 344 LKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSV 403 Query: 480 -----SLGDLDTLMPQDMINAKPISAAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRIS 531 + L +I I+ G L +F M+++ ++ IS Sbjct: 404 DQAIAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYIS 463 Query: 532 ALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 +G +TR ++ FE R + P+ +G +CP +TPEG L Sbjct: 464 CMG--MMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC-----LHPDTIITMS 516 Query: 585 GFLETPYRKVTDG--VVTDEIHYLSAIEEGNY-----VIAQANSNLDEEGHFVEDLVTCR 637 + P R++ DG ++T + + A Y +Q L + + C Sbjct: 517 NGQQKPIRQLKDGDSIITLDPITMEAHSTRIYSHFIKSSSQYGKQLLKITTITGKEIICT 576 Query: 638 SKGESSL 644 + Sbjct: 577 NDHRFLT 583 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 82/457 (17%), Positives = 150/457 (32%), Gaps = 76/457 (16%) Query: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLD 624 N GL+ + ++ + E P ++ + +I ++ E N + N + Sbjct: 968 HNCGLVKNFALMSHVTTDDS-EGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQII 1026 Query: 625 EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 + + VT K + R+ V QQ +SV D R Sbjct: 1027 GIHNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVA---------CDGGRLC---- 1073 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK--RGGVVQYVDASRIVIKVNEDEMY 742 + V + +P + E + G+ R G+++Y+D + N+ + Sbjct: 1074 ---RPVIIVDDQRPRLT--QEHIEDLKDGLRTFDDFIREGIIEYLDVNE----ENDSFLA 1124 Query: 743 PGEAGIDIYN----------------LTKYTRSNQ---NTCINQMPCVSLGEP------- 776 EA I + L Y NQ NT M ++G Sbjct: 1125 WREAAIQPWTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTR 1184 Query: 777 --------VERGDVLADGPSTDL---GELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 V L + DL +L G N VA M ++GY+ ED++++++ + Sbjct: 1185 IDTLLYLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDR 1244 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIP----NVGEAALSKLDESGIVYIGAEVTGGD 881 I +++ + K G + P ++ + LD GI G G Sbjct: 1245 GFGRCIVLKKQVTSIK--KHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQ 1302 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 ILV K +P TP +L+ S K S + + V + + D + Sbjct: 1303 ILVNKYSPLNTIDATPNPELI------PDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQL 1356 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 + L + + K S Q G+ + + Sbjct: 1357 LIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDM 1393 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 79/229 (34%), Gaps = 54/229 (23%) Query: 27 LLSIQLDSFQKFI----EQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV--- 79 L+ +DSF FI ++ + L A + +++ +G P Sbjct: 52 LVKQHIDSFNFFINVEMKKIVKANERLTAE---------NDPSYFVRFTDINVGSPTSTE 102 Query: 80 -------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV-----------------K 115 Q C++R +TYSAP+ V + ++ + V K Sbjct: 103 DNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSK 162 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVS--QLHRSPGVFFDSDKGKTHSSGKVLYN 173 EQ +GE P M G F++ G E+VI++ QL ++ K L + Sbjct: 163 KTPEQMAALGECP-MDPGGYFIVRGQEKVILNHEQL--------SKNRIIIEMDSKGLPS 213 Query: 174 ARIIPY---RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ 219 A + R S + +P I+L+ + T+Q Sbjct: 214 ASVTSSTHERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQ 262 >UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 Tax=Eukaryota RepID=RPA2_DICDI Length = 1130 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 86/350 (24%), Positives = 141/350 (40%), Gaps = 73/350 (20%) Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 Q+ + Y + + + + + G P + + V L R GDK + RHG Sbjct: 831 RQVTKDYKGKEEAYIE--DVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHG 888 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 KGV+S++ P +MP+ E+G D+++NP PSRM IG ++E G A Sbjct: 889 QKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKA----------- 937 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 GA + D + F +E + Sbjct: 938 --------------------GAIHGKFQDATAFQFDE-------------------NNTA 958 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 E L G ++Y G TG++FE + G Y +L H+V DK R+ G Sbjct: 959 IDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKV 1018 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD--------------- 1296 + +T+QP+ G+ GG RFGEME +L A+GA++ L + L SD Sbjct: 1019 NALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLT 1078 Query: 1297 -----DVNGRT-KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D + +T K+ + +P F L+ E+ ++ I ++L+ Sbjct: 1079 IYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAAVNITMKLQ 1128 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 99/622 (15%), Positives = 202/622 (32%), Gaps = 101/622 (16%) Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETL-------RVDPTNDRLSALVEIYRMMRPG 373 LL L + K I + ++++ + +++ N + L I R Sbjct: 236 LLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFR-- 293 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 A + F F + +GR N+ + + + +I +++KL Sbjct: 294 -------ARTQFPPSFSNIK------IGRWFINQFVFVHLPNYNDKY--NLLILMIQKLY 338 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR--------VERAVKERLSLGDLD 485 + GK D+ID + + G + + L V ++ +++ GD Sbjct: 339 AMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKL 398 Query: 486 TLMPQDMINAK-PISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRI 530 + +++ I+ F + L D+ N L I+H R Sbjct: 399 PDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFR-- 456 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN-------- 582 ++ G +R + P +G CP+ TP+G GL+N LS Sbjct: 457 -SIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPT 515 Query: 583 -EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE-----GHFVEDLVTC 636 + P G++ I +S + I L + V+ L Sbjct: 516 VQKAQTLLPSFLAAHGMLP--IDMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYL 573 Query: 637 RSKG---------ESSLFSRDQVDYMDVSTQQVVSVGAS-LIPFLEHDDANRALMGANMQ 686 RS G E S V+ S + + GA + P + L+G Q Sbjct: 574 RSMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSGQNELIGPQEQ 633 Query: 687 RQAVPTLRADKPL--VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 + + + V T +E S + + + D ++ + + +M Sbjct: 634 LYMEIAVVPHEVIKGVTTHIET-----SPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQ 688 Query: 745 EAGIDIYNLTKYTRSNQNTC---INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 G +++ R++ Q P V + + G N Sbjct: 689 TMGTPLHSYP--FRTDNKLYKVQNVQKPIVHTKNQFK----------FRCNDYPHGCNAV 736 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFT-TIHIQEL-ACVSRDTKLGPEEITADIPNVGE 859 +A + GY+ ED++++++ + +++ E ++ ++ PN Sbjct: 737 IAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVV 796 Query: 860 AALSK-LDESGIVYIGAEVTGG 880 L K +D G+ ++G + G Sbjct: 797 DELDKFIDTDGLPFVGRLIKPG 818 Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 163/481 (33%), Gaps = 88/481 (18%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI--QSYSGNSELQYVSYRLGEPVF 80 ++ L+ +DSF F + G++ + P+ + S ++++ +L P Sbjct: 4 ELKSLIQPHIDSFDFFTDH------GIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTR 57 Query: 81 D---------VQECQIRGVTYSAPLRVKLRL--VIYEREAPEGTVKDIKEQ------EVY 123 + E + G TY+AP + + L V E +GT D +Q EV Sbjct: 58 NIVEKEIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVD 117 Query: 124 MGEIPLMTDN------------------------GTFVINGTERVIVSQL---------- 149 +G +P+M + G F++NG E+V+ + Sbjct: 118 LGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVAL 177 Query: 150 ------HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW---LDFEFDPKDNL-FVRID 199 +R PG +G + R P R S L + D + L F+ Sbjct: 178 HRKAWTNRGPG---------YTKNGITIRCVR--PDRSSITNNLHYINDGQTTLRFLYRR 226 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 + LPAT++L+AL TTE +E ++ +N + V LR + +I Sbjct: 227 QEFFLPATLLLKALKDTTE---KEIYENIVQGDNENTFLTDRVELSLREQKI-NNINTQE 282 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 +V G R AR ++K+ + + Y D+ ++ + + Sbjct: 283 EVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPN-YNDKYNLLILMIQKLYAMV 341 Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 + + +G + E L + + L + G+ + Sbjct: 342 GGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGD-KLPD 400 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRS--LLREEIEGSGILSKDDIIDVMKKLIDIRN 437 A + + + F DR+ + S L++ I K + + + I Sbjct: 401 ALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHR 460 Query: 438 G 438 G Sbjct: 461 G 461 >UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa RepID=B9G6G0_ORYSJ Length = 1150 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 99/459 (21%), Positives = 155/459 (33%), Gaps = 90/459 (19%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P+G + V V +T +E + + E L A + Sbjct: 726 PSGTNAIV-AVLSYTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTEFFC 784 Query: 981 AGGVEAEKLDKLPRDRWLELG---LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 + + + D +G +E+ + L +K + A + Sbjct: 785 KSNLSRDTTAAIESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIK--LKGSEPAAIDYVA 842 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN-GTPVDI 1096 L+ + L R GDK + RHG KGV S++ P DMP+ N G D+ Sbjct: 843 VNGTNFKDRLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDL 902 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP PSRM I +LE+ A G+ Sbjct: 903 IINPHAFPSRMTIAMLLESIAAKA-------------------------------GSLKG 931 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 + +D + F+ R + E+ +L G LY G Sbjct: 932 KFIDATPFASSVKER----------------SNSIVDELGPMLASYGFNYHGTEILYSGV 975 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 G + + + +G +Y +L H+V DK R+TG +T+QP+GG+ GG RFGEME Sbjct: 976 FGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRKYGGGIRFGEMERD 1035 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTK----------------------------- 1303 AL A+GA+Y L + L SD DV Sbjct: 1036 ALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKKAKRDMLGLPTVKPP 1095 Query: 1304 ---MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + MP F L E+ ++ I +EL Sbjct: 1096 KNFACQACKTSKGMETVAMPYVFRYLASELAAMNIKLEL 1134 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 64/391 (16%), Positives = 137/391 (35%), Gaps = 48/391 (12%) Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 ++ N I+H R ++ G + VR + P +G +CP+ TP+G GL+N + Sbjct: 443 ERLNFHRYISHFR---SVHRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 499 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 + + + + E + ++ + A +AQ ++ G +++ Sbjct: 500 TSTCRISSFYNSEGATKDFQKIKMSLIARLVGAG------MAQLLPRIERTG--PPEVLH 551 Query: 636 CRSKG----ESSLFSRDQVDYMDVSTQQVVSVGASLIP--FLEHDDAN-----RALMGAN 684 G + ++V D+ V P +L + A R+L+G + Sbjct: 552 VHVDGCIVGSIASAKIEEVIPEDLEVGYVPLSHGGAYPGLYLFTNPARFLRPVRSLLGLS 611 Query: 685 MQRQAVPTLRA--------DKPLVGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASR 731 + + P G G + + ++ + + D ++ Sbjct: 612 NGGPNIELIGPFEQAFMEIRCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQ 671 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 + + +M G L K+ T + + P+ R A + Sbjct: 672 SPRNMYQCQMAKQTMGFCGQAL-KFR-----TDVKAFHLQTPQTPIVRT---ATYSKYCM 722 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 E G N VA + + GY+ ED++++++ V F HI + C+ K + +T Sbjct: 723 DEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGMFRG-HIFQTECIDLSAK-SRDNVT 780 Query: 852 --ADIPNVGEAALSKLDESGIVYIGAEVTGG 880 N+ + ++ G+ IG + Sbjct: 781 EFFCKSNLSRDTTAAIESDGLPRIGENIFPN 811 >UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae AF16 RepID=A8WJV6_CAEBR Length = 1160 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 85/362 (23%), Positives = 134/362 (37%), Gaps = 91/362 (25%) Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 +A + + ++ A+R +T +D A + KV L RR + GDK + RHG Sbjct: 851 RDVAYKDVSITYKTPTPSYAERVLLTYNEDEA----HLFKVLLRQTRRPELGDKFSSRHG 906 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 KGV I EDMP+++ G D+++NP G ++ K+ Sbjct: 907 QKGVCGLIAQQEDMPFNDLGMVPDMIMNPH----------------GYPSRMTVGKLM-- 948 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 E++ + G F G + Sbjct: 949 ------------------------------------ELLSGKAGVMNGTYHYGTAFGGDQ 972 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 ++ E L G+ L G TG+ + G +Y KL H+V DKMHAR+ G Sbjct: 973 VKDVCEELAARGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPR 1032 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD-------------- 1297 + +T+QP G+++ GG R GEME L AYGA+ L E L V SD+ Sbjct: 1033 AALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVLFRSFVPLIPI 1092 Query: 1298 -------------------VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 V G + +P + +L +E++S+ I Sbjct: 1093 EVFFVRRCFQCVDVCTGCGVIGSKGWCQKCRSSKSMANIKIPYACKLLFQELQSMNIVPR 1152 Query: 1339 LE 1340 L+ Sbjct: 1153 LD 1154 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 122/709 (17%), Positives = 247/709 (34%), Gaps = 109/709 (15%) Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN---- 314 G +V KG QL K+ + + + + +V++ +S + Sbjct: 154 GGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTVKKGKYSV 213 Query: 315 --MELSLDL-----LAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTNDRLSALV 364 +L+ D+ + I + ++ + ++TL + AL Sbjct: 214 RHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEECINAGVYTQQQALA 273 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 + ++ + + ++ + + AV + + +G+ + Sbjct: 274 YVTSKVKARKFTPFGSLPGTSVSVLTAPKEH--EAVDFLSNSMITHIACPDGNFKMKAIY 331 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-- 482 + + ++LI G+ E+DD D GN+R+ G + F R +K Sbjct: 332 LGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNALM 391 Query: 483 -------DLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALG 534 D+ M QDMI ++A G+ + +F M++ ++ ISALG Sbjct: 392 KTMAAPLDIVKHMRQDMITNTIVNAMST---GNWIIKRFRMERLGVTQVLSRLSYISALG 448 Query: 535 PGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 +TR + FE R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 449 --MMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSD- 505 Query: 588 ETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC----RSKG- 640 E P ++ +++H + S + + + N L E +V R G Sbjct: 506 EKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGL 565 Query: 641 --ESSLFSRDQVDYMDVSTQQVVSVGASLI-PFLEHDDANRALMGANMQRQAVPTLRADK 697 E SR + + S G L P++ L ++Q L+ K Sbjct: 566 LSEFVSVSRSMTNRS----VFISSDGGRLCRPYIIVRHGKPMLTETHVQE-----LKEGK 616 Query: 698 ----PLVGTGMERAVAVDSGV-----------------------TAVAKRGGVVQYVDAS 730 V G+ + V+ T + G++ Y + Sbjct: 617 RIFEDFVDDGIVEYLDVNEMNDALIAVYENEIGAETTHLEIEPFTLLGVCAGLIPYPHHN 676 Query: 731 RIVIKVNEDEMYPGEAGIDIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVLADGP 787 + + M G+ + + R + C Q P V Sbjct: 677 QSPRNTYQCAM--GKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTI----------E 724 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI---HI----QELACVS 840 T+ +L G N +A M ++GY+ ED++++++ + + H+ ++ + Sbjct: 725 LTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQT 784 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 D LGP + + + + LD+ GIV+ GA + ++ K P Sbjct: 785 YDRLLGPAVDSVTLKPIFKH--KNLDQEGIVFTGARILPKQTIINKYMP 831 Score = 49.7 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 88/249 (35%), Gaps = 67/249 (26%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLG 76 P L V L+ L SF F+ + S I + N L Y+ R+G Sbjct: 32 VPAFLKVRGLVKQHLVSFDHFV------NVEIRNIMLSNQKITSDANPNFHLTYLDIRVG 85 Query: 77 EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT----- 131 +P +C++R +TYSAP+ V + + + ++++ +G +P+M Sbjct: 86 KPS----KCRLRDMTYSAPISVDI--------EYTRGHQRVYKKDLVIGRMPIMLRSSKC 133 Query: 132 -------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 G FV+ G+E+VI+ Q S ++ + Sbjct: 134 ILRDLAEEELARVQECPHDPGGYFVVKGSEKVILIQEQLS------KNRIMVGRNSSKEL 187 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRR----------KLPATIILRALNYTTE-QIL 221 ++ + K +V + + + +P +II +A+ ++ I+ Sbjct: 188 QCEVLSS-------TSERKSKTYVTVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIV 240 Query: 222 DLFFEKVIF 230 + + Sbjct: 241 STIGHEEKY 249 >UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q27493_CAEEL Length = 1127 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 88/356 (24%), Positives = 128/356 (35%), Gaps = 88/356 (24%) Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 H E R + QG+ K + ++R GDK A RHG KG+ S + Sbjct: 813 HKFHYAEPAYCGLVRIVEQGE--GDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFL 870 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P+E +P+ E G DI+ NP G PSRM IG ++E+ G AA G+ +A E Sbjct: 871 WPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNE-- 928 Query: 1140 KLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 D ELL Sbjct: 929 ------------------------------------------------DNTAINHFGELL 940 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 G Y G G Q E + G +Y +L H++ DK R+TG +T QP+ Sbjct: 941 TKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPV 1000 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-DV---NGRT------------- 1302 G+ + GG RFGEME A+ A+G ++ LQ+ L SD DV R Sbjct: 1001 KGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAG 1060 Query: 1303 -------------------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + + +P F L E+ ++ + I+L Sbjct: 1061 SHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKL 1116 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 79/498 (15%), Positives = 166/498 (33%), Gaps = 73/498 (14%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--G 482 + + +KLI + G+ + D+ + G + R + + V+ +L Sbjct: 318 LAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSS 377 Query: 483 DLDTLMPQDMI-------NAKPISAAVKEFFGSSQL--------------SQFMDQNNPL 521 D ++ I I+ + F + L S ++ N L Sbjct: 378 RKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQL 437 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ++H R A+ G E +VR + P +G +CP+ TP+G GL+N ++ + Sbjct: 438 RFVSHFR---AIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRI 494 Query: 582 --NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN-----SNLDEEGHFVEDLV 634 + P G+ T + L+ E Y + + + L Sbjct: 495 VTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLR 554 Query: 635 TCRSKGESSLFSRDQVDYM----DVSTQQ-------VVSVGASLIPFLEHDDANRAL--- 680 + ++ + ++ + D+ Q ++S LI R L Sbjct: 555 CAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIR------PVRNLAMD 608 Query: 681 ----MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 +G Q L ++ G M + + + G ++ + D ++ V Sbjct: 609 AVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHP---SCLFSFAGNLIPFPDHNQSPRNV 665 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 + +M G ++ ++R++ Q P + +E + ++ E L Sbjct: 666 YQCQMGKQTMGTAVHAW--HSRADNKMYRLQFPQQPM-LKLEAYEKY------EMDEYPL 716 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 G N VA + + GY+ ED++ +++ Q I+ V R + E Sbjct: 717 GTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK----VERINLVTERERKTIFYR 772 Query: 857 VGEAALSKLDESGIVYIG 874 + + G+ G Sbjct: 773 NPREEIKTVGPDGLPIPG 790 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 48/150 (32%) Query: 33 DSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD----------- 81 DSF + + + +A F +++ +++ S +L +P D Sbjct: 11 DSFDFLVSKGCQFAA--QAVPAEKFRLKNGD-AVTMKFTSAQLHKPTLDTGAKLTSDTLP 67 Query: 82 --VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM--TDNGT-- 135 EC+ RG+TY+ L+V + + + G+ DI E + +G++P+M ++ Sbjct: 68 LLPAECRQRGLTYAGNLKVGIDVHV------NGSRLDIIE--IILGKVPIMLRSEGCHLR 119 Query: 136 --------------------FVINGTERVI 145 F++NG+E+VI Sbjct: 120 GMSRKELVVAGEEPIEKGGYFIVNGSEKVI 149 >UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0ERH0_ENTDI Length = 1106 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 81/327 (24%), Positives = 127/327 (38%), Gaps = 69/327 (21%) Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 + +I GD++ G+ K V V + R GDK + RHG KG +S +DMP+ E+G Sbjct: 825 ESVRIVGGDNIDSGLQKAV-VRVRYNRTPVIGDKFSSRHGQKGTLSLHYQEKDMPFTESG 883 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 DI++NP PSRM I ++E+ + Sbjct: 884 MTPDIIINPHAFPSRMTIAMLVESMASK-------------------------------V 912 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 GA + D + F +E + + L G Sbjct: 913 GALKGEYQDATPFKFDE-------------------ENTAVDYFGKQLLKYGYNYYGSEP 953 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 LY G G + + + +G +Y +L H V DK RSTG S+VT QP+ G+ + GG RFG Sbjct: 954 LYSGIYGNELQSDIYIGVVYYQRLVHQVKDKYQVRSTGPISIVTHQPIKGRKRGGGIRFG 1013 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTKMYKNIVDGNH-------------- 1313 EME +L A+G + + + L SD V + I Sbjct: 1014 EMERDSLVAHGTSMLVHDRLFECSDKCYHYVCTKCGSICTIKRSKEYDKMICQSCGPTSI 1073 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELE 1340 + +P F L E+ ++ + + L+ Sbjct: 1074 VKKIQIPYVFRYLAAELSAMNVRLNLK 1100 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 84/499 (16%), Positives = 172/499 (34%), Gaps = 68/499 (13%) Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF-----------RVGLV 469 D +I +++KL + +G+ + + +D ++ + G + + R+ ++ Sbjct: 318 KSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLPGHLYQTVIKEEIQNILSKARLFIL 377 Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL--SQFMD--QNNPLS--- 522 + + VK+ + + L AK +K F + S D Q N S Sbjct: 378 KDLKDVKKGSKITERVYLQRILSNVAKSFGTRIKSFISTGNFETSSTTDLQQTNGFSITA 437 Query: 523 -EITHKRRIS---ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 + H R S ++ G +R + P +G +CP+ TP+G GL+N +V Sbjct: 438 ERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPEAWGFMCPVHTPDGAPCGLLNHFAVS 497 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 + N P +K+ D + T+ L + + + G V V+ Sbjct: 498 CRINARKHP-LPEQKIID-LCTE----LGMVSTQFMKLPSIYIPVLLNGK-VIGKVSPHE 550 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM-QRQAVPTL-RAD 696 R + + + +G +L+ D AL N+ + P + RA Sbjct: 551 INSFVQQLRYERAIYNPKIPNTLEIGY-CDGYLQ--DGYHALYLNNLPGQMIRPVIHRAT 607 Query: 697 KPLVGTGMERAVAVD------------------SGVTAVAKRGGVVQYVDASRIVIKVNE 738 +V G V +D S + +++ + + ++ + + Sbjct: 608 GNIVNIGPYEQVFLDIKCGDSIEGMNNAEYEEISALNSLSLLATLTPFCHMNQSPRNMYQ 667 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTD---LGELA 795 +M + + I L+ RS+ P S + + E Sbjct: 668 CQM--AKQTMGIPALSNKYRSDTKLLWLHYPQRS----------ICQCALMEPFGFNEYP 715 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 G N VA + + GY+ ED++++ + ++ + E + I Sbjct: 716 TGANAIVAVISYTGYDMEDALIIKKSAIERGFGHGSQYKAYKVDFEKEGEKNEMFSG-IT 774 Query: 856 NVGEAALSKLDESGIVYIG 874 + GE LD+ G+ G Sbjct: 775 SSGEIFDEHLDDDGLPRPG 793 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 42/154 (27%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD- 81 ++ L +SF F+E+ E L+ + + + EL + +P ++ Sbjct: 10 ELKELTRAHTESFNYFLEKGKEDI--LKYMKKYKIIKKDSTELMELSCTGISIEKPRYNG 67 Query: 82 ----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM--TDNG- 134 C+ +TYS +R+ + + T K I EV GEIP+M T Sbjct: 68 LPLFPYMCRSAALTYSGKIRLTITI------KENETSKTI---EVDGGEIPIMVGTSKCW 118 Query: 135 -----------------------TFVINGTERVI 145 F+ING ER + Sbjct: 119 IGSEYITPEERINIREDPHEIGGYFIINGIERYL 152 >UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7F6Y6_SCLS1 Length = 1165 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 168/490 (34%), Gaps = 128/490 (26%) Query: 921 PNGVSGTV----------IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 PNG++ V D + + E+ I K K +L E + A Sbjct: 727 PNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIY----KTKKYELEEGHKSRSAR 782 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELG--------------LTDEEKQNQLEQLAE 1016 ++ G V+AE + D +G ++ +E + + + Sbjct: 783 NIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAAWHTVSMDENGKYVNRDGQ 842 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076 + E E E + R I G++ + + V L + R GDK + RHG KGV Sbjct: 843 THFEKYKETEIAFIEEVRLI--GNENGIEPCQAISVKLRIPRSPVIGDKFSSRHGQKGVC 900 Query: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ 1136 S+ P DMP+ E+G D ++NP PSRM IG +E+ G A Sbjct: 901 SQKWPAVDMPFTESGIQPDTIINPHAFPSRMTIGMFVESLAGKA---------------- 944 Query: 1137 EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIK 1196 GA D + F +E + Sbjct: 945 ---------------GALHGLAQDSTPFKFDEEHKAG-------------------DYFG 970 Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 L G +Y G TGE+ + +G +Y +L H+V+DK R+TG + +T Sbjct: 971 HQLMKAGYNYYGNEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKYQVRTTGPVTQLTG 1030 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG---------------- 1300 QP+ G+ + GG R GEME +L A+G A+ LQ+ L SD Sbjct: 1031 QPIKGRKKGGGIRVGEMERDSLLAHGTAFLLQDRLLNCSDYTKSWICKECGTFLSTQPTV 1090 Query: 1301 -------------RTKMY-------------------KNIVDGNHQMEPGMPESFNVLLK 1328 R + + V G +P L Sbjct: 1091 SAFASKKKGTGVVRCRKCATRAEGKFGGGEVWEDGKGQRWVGGEDTTVVAVPGVLKYLDV 1150 Query: 1329 EIRSLGINIE 1338 E+ ++GI ++ Sbjct: 1151 ELAAMGIKLK 1160 Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 87/599 (14%), Positives = 179/599 (29%), Gaps = 149/599 (24%) Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE-------DRYDLSAVGRMKFNRSL 409 NDR+ L+ Y+ T+ + F YD+ F R + Sbjct: 301 NDRVELLLRTYKAY---GLYTKSKTRAYLGEKFRIVLGVPDTMSNYDVGTE----FLRKI 353 Query: 410 LREEIEGSGILSKDD------IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM---- 459 + + + + D ++ + +KL + G D+ D + N+ I G + Sbjct: 354 VLVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPDAVQNQEILLGGFLFGMI 413 Query: 460 AENQFRVGL-VRVERAVKERLSLGDLDTLMPQDMI----------NAKPISAAVKEFFGS 508 + + L + A+++ + + + + + + + A++ F + Sbjct: 414 IKERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKDFPVKICSRTNEQVGGALEYFMST 473 Query: 509 SQLSQ--------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP-- 552 L ++ N L I H R + G + V P Sbjct: 474 GNLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFR---MIHRGSFFAQLKTTTV--PLPKL 528 Query: 553 -THYGRVCP--IETPEGPNIGLINSLSVYAQTNEYGFL--ETPYRKV--TDGVVTD-EIH 604 + G V T E + L + + + + Y KV T GV T+ EI Sbjct: 529 LSELGVVSTGSSSTDESVVVQLDGKIMGWCSPKQSLVIADTLRYWKVEGTHGVPTNLEIG 588 Query: 605 YLSAIEEGNYVIAQANS-------NLDEEGHFVEDLV-TCRSKGESSLFSRDQV-----D 651 Y+ G Y ++ + ED V S + ++ Sbjct: 589 YIPNSHGGQYPGIYLSAAPARMVRPVKYLALDKEDFVGPLEQPFMSIAVTEQEIEAGEHT 648 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 +++ ++S+ A++ PF + + + R + M +Q++ GT Sbjct: 649 HVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQSM----------GTP-------- 690 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 + I + + Y L Q P V Sbjct: 691 -----------------GTAIRYRTDNKA----------YRLQT----------GQTPIV 713 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 L + D G N VA + + GY+ +D++++++ + Sbjct: 714 RA--------PLHNDYGFDN--FPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGT 763 Query: 832 HI--QELACVSRDTKLGPEEITADIPNVGEAALS-----KLDESGIVYIGAEVTGGDIL 883 ++ I + +DE G+ +IG V GD++ Sbjct: 764 IYKTKKYELEEGHKSRSARNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLI 822 >UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RER1_PLAYO Length = 1470 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 100/459 (21%), Positives = 177/459 (38%), Gaps = 47/459 (10%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P+G + V + G + + + + + + + ++++ + + Sbjct: 1007 PSGTNAVV---AILAYTGYDMEDALIINKASSDRGMFRTHIYKTEVIDLYKKTNSPDFAL 1063 Query: 981 AGGVEAEKLDKLPRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI-- 1036 V ++ E +++ + Q + + L KK E ++ Sbjct: 1064 GNNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPLYSYINKKNELTTYEVFK 1123 Query: 1037 TQGD------DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 T GD + ++ + L R GDK A RHG KGV+S++ P EDMP+ E+ Sbjct: 1124 THGDYYVDCVSNSQSNNQVAIIRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSES 1183 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD 1150 G D++ NP G+PSRM IG ++E+ G AA G +I+A ++ K + Sbjct: 1184 GIVPDVIFNPHGIPSRMTIGMLIESICGKAASIYGKRIDATPFRKYTKQKS---FNNPWI 1240 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 G + ++ + +E ++ + +D K +LL G Sbjct: 1241 DGCGAKGFLNKQDENADEKKTTIKSSTENSDTTEISYDE-KIDFFAKLLLNKGYDYYGTE 1299 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 LY G G + + G +Y +L H+ DK R TG +T QPL GK + GG R Sbjct: 1300 LLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPVCHLTHQPLKGKKKHGGIRL 1359 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSD--------------------DVNGRTKMYKNI-- 1308 GEME L ++G ++ + E + SD + +G+ ++I Sbjct: 1360 GEMERDGLISHGCSFIINERFLMNSDGHECFVCPKCGLILSPILQYNCSGKLMKGRSIGG 1419 Query: 1309 ------VDGNHQM--EPGMPESFNVLLKEIRSLGINIEL 1339 + +P LL E+ L I I L Sbjct: 1420 NSKMAVCKSCNVSCKIVYVPYVLRYLLNELVCLNITIRL 1458 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 19/205 (9%) Query: 390 FSEDRYDLSAVGRMKFNRSL-------LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 F E +Y+ + + L E+ +L+ D ++ ++L + Sbjct: 464 FLEKKYEGFKLNVKQIYLRYKEMILHELSEDHFNQILLNNTDKLENNEELTSENDNMISK 523 Query: 443 DDIDHLGNRRIRSVGE---MAEN---QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 D N R+ + E + N R ++ + G + + + Sbjct: 524 --RDSTKNLRLMFMNEKEKLFTNVDGYLREIFSDSRLFIENTRTFG-VASFAISYLFKTG 580 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 IS+ + S D+ N L +T+ R A+ G ++ R + +G Sbjct: 581 NISSDYIHYQQKSGWVILADEINNLRLLTNFR---AIHRGSFFQDVKVLSPRKLLGESWG 637 Query: 557 RVCPIETPEGPNIGLINSLSVYAQT 581 +CP+ TP+G GL+N LS Y Sbjct: 638 FICPVHTPDGSPCGLLNHLSQYCCI 662 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 13/113 (11%) Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT-- 851 G N VA + + GY+ ED++++++ F T HI + + K + Sbjct: 1006 FPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRT-HIYKTEVIDLYKKTNSPDFALG 1064 Query: 852 -------ADIP---NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 +P N E L++ G+ I ++ + L + K E Sbjct: 1065 NNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPLYSYINKKNELT 1117 >UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 Tax=Neoptera RepID=RPA2_DROME Length = 1129 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 138/350 (39%), Gaps = 79/350 (22%) Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 Y +K + ++ + + DL+P K+V + L V R GDK A R G KG+ S Sbjct: 828 YKVVKMDEKEDCIVESIRQLGSFDLSPK--KMVAITLRVPRPATIGDKFASRAGQKGICS 885 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 + P ED+P+ E+G DIV NP G PSRM I ++ET G A G+ +A + E Sbjct: 886 QKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSE 945 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 + + Sbjct: 946 --------------------------------------------------ENTAIDYFGK 955 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 +L+ G G RLY G G + + G ++ +L H+V DK RSTG+ T Q Sbjct: 956 MLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQ 1015 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK---------- 1303 P+ G+ + GG RFGEME AL ++GAA+ LQ+ L SD V + Sbjct: 1016 PIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIV 1075 Query: 1304 -------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + D + +P SF L+ E+ S+ IN + Sbjct: 1076 KRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARFK 1125 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 83/508 (16%), Positives = 190/508 (37%), Gaps = 91/508 (17%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR----VGLVRVERAVKERLS 480 I+ +++KL GK +V+++D + + G + + + +V R ++++L+ Sbjct: 346 IVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLT 405 Query: 481 LGD---LDTLMPQDMINAKPISAAVKEFFGSSQLSQ--------------FMDQNNPLSE 523 D +M Q M A + A++ F + ++ + N + Sbjct: 406 SPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRY 465 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++H R A+ G E R + P +G +CP+ TP+G GL+N L++ + + Sbjct: 466 MSHFR---AIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISM 522 Query: 584 YG-----------FLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVED 632 ++ +++ E Y+ +G ++ + + E V++ Sbjct: 523 RPDPKLVKAIPKHLIDMGMMPLSNRRYLGEKLYV-VFLDGKHL---GHIHQSEAEKIVDE 578 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 L R Q++ +G IPF ++ + R P Sbjct: 579 L---RYGKIFGTLP------------QMMEIG--FIPFKKNGQFPGLYIATGPARMMRPV 621 Query: 693 LR---ADKPLVGT--GMERAVAVDS--------GVTAVAKR------GGVVQYVDASRIV 733 +GT + +A+D+ +AK ++ D ++ Sbjct: 622 WNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSP 681 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 + + +M G+ + L ++ Q P L PV ++ D + Sbjct: 682 RNMYQCQM--GKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLD-------D 732 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR-FTTIHIQELACVSRDTKLGPEEITA 852 A+G N VA + + GY+ ED++++++ + + +I+ + + + + Sbjct: 733 FAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARH--- 789 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGG 880 P++ E + LD G+ + G++++ G Sbjct: 790 --PHMPE-LIKHLDTDGLPHPGSKLSYG 814 >UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium RepID=B3L5F6_PLAKH Length = 1539 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 109/471 (23%), Positives = 168/471 (35%), Gaps = 55/471 (11%) Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 +I+ R I +++ D + + + A Sbjct: 1057 EDALIINKSSAERGIFRTHIYKTIIIDLKKNHGAGDFALGNNVRYTNKNAGTNATSANST 1116 Query: 984 VEAEKLDKLPRDRWLELGLTD--EEKQNQLEQLAEQYDELKHE-----FEKKLEAKRRKI 1036 A+ K + + D Q ++ +L Y + +EK E + Sbjct: 1117 STAKNNLKFQYEHMGKFLNKDGLPRVQQKMVELNPLYSYVNKASELTVYEKFKEHGEYYV 1176 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + +I + L R GDK A RHG KGV+S++ P EDMP+ E+G D+ Sbjct: 1177 DCVTNYKSTKNQIGIIRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDV 1236 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR----------EFIQ 1146 + NP G+PSRM IG ++E+ G AA G +I+A ++ K + Sbjct: 1237 IFNPHGIPSRMTIGMLIESICGKAACMYGKRIDATPFRKYTKQKSFNNEWIDNCGVKGFL 1296 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI--ATPVFDGA------KEAEIKEL 1198 G + K S EEV + +K TP + K +L Sbjct: 1297 EQVKQGKNEDGKDSSSHAPGEEVGHSHKGKKKNDIPKGETPKGEKNNITYDEKIDYFAKL 1356 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L G LY G G + + G +Y +L H+ DK R TG +T QP Sbjct: 1357 LLNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPICNLTHQP 1416 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---------------------- 1296 L GK + GG R GEME L ++G ++ + E + SD Sbjct: 1417 LKGKKKHGGIRLGEMERDGLISHGCSFIINERFLINSDGHECFVCPQCGLILSPIMQFTC 1476 Query: 1297 --------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + GR+K+ G +P LL E+ L I I L Sbjct: 1477 SGEMVKGRSIGGRSKVAVCKSCGVSCKIVYVPYVLRYLLNELICLNITIRL 1527 Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 97/280 (34%), Gaps = 37/280 (13%) Query: 468 LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF------------- 514 VE ++E + +L + + I ++ + FF + +S Sbjct: 539 FSSVESYIQELYNDNNLFVDISKSFIT---LTMPIIFFFKTGNISSENIGYQQRSGWVIG 595 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 D+ N L IT+ R A+ G +E R + +G +CP+ TP+G GL+N Sbjct: 596 ADEINSLRFITNFR---AIHRGCFFQEVKVLSPRKLLGEAWGFICPVHTPDGSPCGLLNH 652 Query: 575 LSVYAQT-------NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS----NL 623 LS ++ + ++ +K+ V D+ + I E + +S + Sbjct: 653 LSQFSYVHNSASNESHKLNIKLYLKKIGVNVNLDDTSGIPTIYEDQTIPILVDSVPITYI 712 Query: 624 DEE--GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 E+ V L ++ +L + +++ + S+ + P R L Sbjct: 713 SEQDFNRVVYKLKYAKNHNLYNLKAYFEINAYLNEPLLMDSIIINTFP----GRLIRPLF 768 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 M + A +P V + + + R Sbjct: 769 NLKM-KCIEYISPAYQPYVAIAINYEHIKKNNLARKMLRM 807 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 14/124 (11%) Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ--NTCINQMPCVSLGEPVERGDV 782 + D ++ + + +M GI N+ YT +N+ Q P V + G Sbjct: 978 PFSDHNQSPRNIYQCQMLKQTMGIQSLNMM-YTFTNKIYRMITPQYPLVVTRDYELYG-- 1034 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 D G N VA + + GY+ ED++++++ + F T HI + + Sbjct: 1035 -VDN-------FPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRT-HIYKTIIIDLK 1085 Query: 843 TKLG 846 G Sbjct: 1086 KNHG 1089 >UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 3 RepID=RPB2_IIV3 Length = 1140 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 109/443 (24%), Positives = 169/443 (38%), Gaps = 80/443 (18%) Query: 921 PNGVSGTVI----------DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 PNG++ V D + + +++ Q KK+ E +I Sbjct: 754 PNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEKKNGIIEERIEIPS 813 Query: 971 LFSRIRAV---LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 +IR LV ++ + L +T + K NQ E+L + ++H E Sbjct: 814 NAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKNK-NQDEKLVDSSVIVQHGEEG 872 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 ++ + G +IVKV + R + GDK KG I P EDMP+ Sbjct: 873 YVDRIVDNVIDG-------CRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPF 925 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 +G DI++NP +PSRM I QI+ T +G Sbjct: 926 TASGMTPDIIINPNCIPSRMTINQIISTVMGK---------------------------- 957 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + + N R + E+ LKL S Sbjct: 958 ---------------------LYTVNPNPRFRNGNSFQENSNTILKELCHHLKLNGFDPS 996 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G +Y G TGE+ + + +G Y +L H+V DKMHARS G + + +QP G++Q GG Sbjct: 997 GSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGG 1056 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMYKNIVDGNHQM------EP 1317 RFGEME + +GA L E + + SD DV M + H Sbjct: 1057 LRFGEMEKDCILVHGATQFLNERMFLNSDPFQIDVCKDCGMMSSTSKKCHHCGSINVKRC 1116 Query: 1318 GMPESFNVLLKEIRSLGINIELE 1340 +P S LL+E+ +GI +++ Sbjct: 1117 NIPYSCKNLLQELNGMGIKTKID 1139 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 104/556 (18%), Positives = 198/556 (35%), Gaps = 76/556 (13%) Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 I + D + ++KK + K VD+ D ++R+ + GE+ FR+ + ++ Sbjct: 360 ITSTRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYKKFQK 419 Query: 474 AVKERLS--LGDLDTLMPQDMINAKPISAAVKEFFG-------SSQLSQFMD-QNNPLSE 523 ++ D+ + I + + ++G + +SQ ++ + + L+ Sbjct: 420 TCITQIRNRKPDISNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQVVNPKVSLLAN 479 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 + RR+ + +E E+R +HP+ VCP+ETPEG +G + +++V+ Q Sbjct: 480 YSSLRRV-VIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFCQVTT 538 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 G D D + + + N ++ N + GH + Sbjct: 539 -GISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLLINGSPYGNGH----ANVIHRLNFLN 593 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR---ADKPLV 700 + V + ++ S I + D N + + VP+ + ++ + Sbjct: 594 DTNISIVVNRALGVIEIFSDAGRFIRPIFDLDK-----ICNFEGEIVPSFKWFLDNQLIR 648 Query: 701 GTGMERAVA-------VDSGVT--------------AVAKRGGVVQYVDASRIVIKVNED 739 + A A D G++ + D ++ Sbjct: 649 YIDINEAAANSIAIELRDLSTNPNTRYNLMELDPCGMFGIVAGIIPFPDRTQSARNCFYS 708 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 M G + K + Q P V+ E + E G N Sbjct: 709 SMVKQAIGFVPCHNLKTETVSHTLNYPQKPLVTT-SFAEYNQL---------NEYPNGIN 758 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP---- 855 VA + GYN EDSI++++ + F TI + + E I +IP Sbjct: 759 AIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEKKNGIIEERI--EIPSNAI 816 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 + + + GIV + V GD+L+ KVT K + Q +EKL+ D Sbjct: 817 KIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKNKNQ---DEKLV------------D 861 Query: 916 SSLRVPNGVSGTVIDV 931 SS+ V +G G V + Sbjct: 862 SSVIVQHGEEGYVDRI 877 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 95/265 (35%), Gaps = 67/265 (25%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLGEPVF----- 80 L+ Q+++F FI + GL+ + I+ N L++ + + P Sbjct: 32 LVKHQIETFNHFISK------GLKTIINNESSIKYQSHDNYSLKFTNIYVEYPSIIDDDR 85 Query: 81 -----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE-VYMGEIPLMT--- 131 QE + + ++Y+ + V + I E EG I EQ V + +IP+M Sbjct: 86 TIRDLYPQEARNKDLSYTGNVCVNV---IEMVENKEGKPPQISEQYRVPIAKIPIMLGSD 142 Query: 132 ----------------------DNGTFVINGTERVIVSQLHRSPG--VFFDSDKGKT--- 164 G F+ING ERV++SQ+ ++ V F + Sbjct: 143 VCHLSKYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPVCFVKSTSQKEDV 202 Query: 165 -----HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK---LPATIILRALNYT 216 S + +++ + + K+ + V + +RK +P I+ + L Y Sbjct: 203 LICEMRSMCEETFHSTSVQVK--------MIKNKIMVSLKLKRKLIDIPVGIVFKCLGYN 254 Query: 217 TEQILDLFFEKVIFEIRDNKLQMEL 241 +Q+ F K + Sbjct: 255 PDQMGSKFRSLFNLPPEYEKYIDAI 279 >UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8I793_CHLRE Length = 720 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 100/482 (20%), Positives = 161/482 (33%), Gaps = 130/482 (26%) Query: 921 PNGVSGTVI----------DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 PNG + V D + + VE+ + + + K++ Sbjct: 305 PNGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHASLYKTECVNLKEER---------- 354 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE-EKQNQLEQLAEQYDELKHEFEKKL 1029 GG + P + G E + + + + + Sbjct: 355 -----------GGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSIIWPGQVFYATRDDQS 403 Query: 1030 EAKRRKITQGDDLAP------------GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + +G+++A G+ + + L R GDK A RHG KGV+S Sbjct: 404 GKSKSHKLKGEEVAVVDQVGVEGRGLGGLPQQANIRLRFNRNPMIGDKFASRHGQKGVLS 463 Query: 1078 KINPIEDMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ 1136 + P DMP+ G D+++NP PSRM IG ++E+ + G ++A Q+ Sbjct: 464 ILWPDTDMPFCAATGIRPDLIINPHAFPSRMTIGMLVESLVSKGGALAGQFVDASPFQR- 522 Query: 1137 EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIK 1196 A V G Sbjct: 523 ----------------------------------------------ADGVEKGNATERWG 536 Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 L+ GQ + G TG++ + +G +Y +L H+V DK RSTG + +T+ Sbjct: 537 AYLERQGFSRYGQETMISGVTGQEMPCDIYIGPVYYQRLRHMVSDKFQVRSTGPINAMTR 596 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK--------- 1303 QP+ G+ GG RFGEME +L A+GAAY L + L SD DV Sbjct: 597 QPIKGRKFGGGIRFGEMERDSLLAHGAAYLLHDRLHACSDYHVADVCVSCGSLLAPLRKP 656 Query: 1304 -----------------------MYKNIVDGNH--QMEPGMPESFNVLLKEIRSLGINIE 1338 + G+ +P F L E+ ++ I +E Sbjct: 657 AANADVTSNLMLGGGGGEGGGKTVCPVCCPGSSATIERVALPYVFRFLAAELAAMNIKME 716 Query: 1339 LE 1340 LE Sbjct: 717 LE 718 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 ++ N ++H R ++ G E VR + P +G +CP+ TP+G GL+N Sbjct: 41 VAEKLNFFRYLSHFR---SVHRGAYFAELRTTTVRKLLPESWGFMCPVHTPDGAPCGLLN 97 Query: 574 SLSVYAQTNEYG 585 + G Sbjct: 98 HFTAACSIVTQG 109 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK-LGPEEIT 851 E G N VA + + GY+ ED++++++ V+ + ++ + G ++ Sbjct: 303 EFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHASLYKTECVNLKEERGGGGKQYF 362 Query: 852 ADIPNVG-EAALSKLDESGIVYIGAEVTGGDI 882 A P+ +++ G+ +G+ + G + Sbjct: 363 AATPHTQMTRDGDRIEPDGLPAVGSIIWPGQV 394 >UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas RepID=C1FDM4_9CHLO Length = 1192 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 93/358 (25%), Positives = 133/358 (37%), Gaps = 91/358 (25%) Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + R I+ G + V + R GDK + RHG KGV+S + P ED+PY Sbjct: 875 HVIIDRVSISSGKASKGQTETKMSVTVRCDRNPIIGDKFSSRHGQKGVLSFLCPEEDLPY 934 Query: 1088 DE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 E +G+ DI++NP PSRM IG +LE+ A G I+A Q Sbjct: 935 IEKSGSRPDILINPHAFPSRMTIGMLLESMASKAGALDGRFIDASPFQAANDETHIISPT 994 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 R Y E+L+ Sbjct: 995 REY----------------------------------------------GEMLRKHGYNY 1008 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 SG + +G TGE+F+ + VG +Y +L H+V DK RS G + +TQQP+ G+ G Sbjct: 1009 SGSETMVNGLTGERFDVDIFVGLVYYQRLRHMVSDKFQVRSLGPNNPLTQQPIKGRKAGG 1068 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKS------------------------------- 1295 G RFGEME AL A+G++Y + + L S Sbjct: 1069 GIRFGEMERDALIAHGSSYLIHDRLHACSDRHVTSLCTYCGSLLAPGANIQMAATHQVHA 1128 Query: 1296 -------------DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 DD+ R + G +P F L E+ ++ I I LE Sbjct: 1129 SGAGNGQGRLHSFDDIFPRKVSCRVCNTGTGVHNVALPFVFKYLAAELAAMNIRIGLE 1186 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 86/528 (16%), Positives = 175/528 (33%), Gaps = 88/528 (16%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--- 481 ++ +M+KL + G+ D+ D L + I G + + R L K L+ Sbjct: 346 VLLMMQKLYALVAGQCSADNPDSLMHHEILLPGILMQIFVREKLQDALHKAKIALNREFE 405 Query: 482 ----------GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ--------------FMDQ 517 G+ + + + I I + F + LS D+ Sbjct: 406 ENPNHASADDGEWLSQVAIEAITKTNIGRLAEYFLATGNLSSRTGLGLTQTSGFTIVADK 465 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N + I+H R ++ G E VR + P +G +CP+ TP+G GL+N L+ Sbjct: 466 LNYMRYISHFR---SVHRGAYFAELRTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAA 522 Query: 578 YAQT--------NEYGFLETPYRKVTD-----------GVVTDEIHYLSAIEEGNYVIAQ 618 + KV + + +L+ + +G + Sbjct: 523 SCYIHVACESTGEARDRARSQVLKVLSSAGALILHGSTSLGSAPPAHLTVMLDGLILGFV 582 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ---------QVVSVGASLIP 669 A+S + V L + G + + S ++ ++ +S+ + S + ++ Sbjct: 583 ADS---DAKVVVSALRAAKVSGSNGVSSHLEIAHIPLSSCGYGGAFPGLYLFSTSSRMMR 639 Query: 670 FLEHDDANRALMGANMQRQA-VPTLRADKPLVGTGMERAVAVDSG-VTAVAKRGGVVQYV 727 + NR QA + D T + ++G T ++ + + Sbjct: 640 PVIQ-QQNRITENIGSLEQAFMSIRCPDGRQKPTCIAEHAHEENGPGTILSVVASLTPWS 698 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN---QMPCVSLGEPVERGDVLA 784 D ++ + + +M G+ +++ R + Q P G+ Sbjct: 699 DFNQSPRNMYQCQMAKQTMGMPLHSFCY--RPDTKIYRLHTPQRPVAMTGQY-------- 748 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS---R 841 D D LG N VA + GY+ ED+++V++ ++ + Sbjct: 749 DKYQMDN--YPLGTNAVVAVIAHTGYDMEDAMIVNKGAMERGLGHATLYKTETVTLVAGS 806 Query: 842 DTKLG-----PEEITADIPNVGEAALS-KLDESGIVYIGAEVTGGDIL 883 D G +++ + I + +D G G+ G L Sbjct: 807 DENFGQCNVIQQKLGSPIAFTEKHPFDPDIDTDGAPRPGSIKQAGSTL 854 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 100/298 (33%), Gaps = 75/298 (25%) Query: 34 SFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYRLG-------- 76 SF F++ GL R + I S S ++ + + +G Sbjct: 32 SFDYFLDH------GLSDVVRCLDNISIQPSGAQNTSSSPRFKMWFENISIGRPIREDTT 85 Query: 77 -----EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 +P +EC+ TY AP+ + G V I +E + P+M Sbjct: 86 AVRARDPRVFPRECRESSNTYKAPMLATVAWTF-------GDVGAIFRREFRICMFPVMV 138 Query: 132 DN------------------------GTFVINGTERVI--VSQLHRSPGVFFDSDKGKTH 165 + G F++NG ER+I + Q R + K K + Sbjct: 139 ASKVCNLFGFSQDELICRGEEGHEMGGYFILNGNERIIRLLVQQRRH---YIMGMKRKAY 195 Query: 166 SSGKVLYNARIIPYRGS---------WLDFEFDPKDNL-FVRIDRRRKLPATIILRALNY 215 SS +Y R S + + D L FV + +PA IILRAL Sbjct: 196 SSRGPIYTHYATAIRCSANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAGIILRALAE 255 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH 273 ++ ++ + + + +E + + GE A+F I + G A+ Sbjct: 256 FSDSVVQAIVARGLTGLGAQVFAIERI-RIILGEAATFGIHNKVQALAYLGEHFRAQL 312 >UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota RepID=B7FVG3_PHATR Length = 1212 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 116/316 (36%), Gaps = 73/316 (23%) Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 + KV + R Q GDK A RHG KG I EDMP+ G DI++NP +PS Sbjct: 942 GYRFTKVRIRNVRTPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGIVPDIIVNPHAIPS 1001 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 R I I +L + Sbjct: 1002 R---------------MTIAQLIECLLGKVV----------------------------- 1017 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 + +G F +I L G LY G TG V Sbjct: 1018 ----------VFQGCEGDATPFTDVTVEDISTRLHAMGYQRHGNEALYQGHTGRPLNARV 1067 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +G + +L HLVDDK+H+R+ G +++T+QPL G+++ GG R GEME L +G A Sbjct: 1068 FIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCAN 1127 Query: 1286 TLQEMLTVKSD----DVNGRTKMYK---------------NIVDGNHQMEPGMPESFNVL 1326 +++ V SD + R + + + +P + +L Sbjct: 1128 FMRDRFFVNSDQYRIHICERCGLTAQANLKKMTYECRSPMCVGRPTQICQVEIPYAAKLL 1187 Query: 1327 LKEIRSLGINIELEDE 1342 L+E+ S+ I + + Sbjct: 1188 LQELNSMCIQTRIYTK 1203 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 129/640 (20%), Positives = 238/640 (37%), Gaps = 101/640 (15%) Query: 396 DLSAVGRMKFNRSLLREEI-------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 D++ RM++ +++L++E+ E I + KL+ R G+ E DD DH Sbjct: 355 DVTKEDRMRYAQAILQKEVLPHVGTEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHF 414 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFF 506 G +R+ G + FRV ++ + V++ L L + I + I+ +K Sbjct: 415 GKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSL 474 Query: 507 GSSQL-----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 + SQ +++ S ++H RR + L R + R +H TH+ Sbjct: 475 ATGNWGDKGMATKAGVSQVLNRLTYASSLSHLRRCNT----PLARTGKQAKPRQLHNTHW 530 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G VCP ETPEG +GL+ +L++ A G + P + + T+ + + V Sbjct: 531 GMVCPAETPEGQAVGLVKNLALMAYITT-GTAQVPVLEFLEEFSTENLTDILPS-----V 584 Query: 616 IAQANS-NLDEEGHFVEDLVTCRSKGESSLFSRDQVDY-MDVSTQQVVSVGASLIPFLEH 673 IA+ N+ + G++V ++ E+ R VD +VS + ++ I + + Sbjct: 585 IAEPNTCKIFVNGNWVGIHRDPKALEETFRSLRRMVDIDAEVSIVRDIADKEVRI-YTDA 643 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 R L Q+ A ++ + GM+ G+V+Y+D Sbjct: 644 GRICRPLFVVQEQKLA---IKKHHIMQLQGMDP--NEKKLTWTDLLMEGLVEYIDTEEEE 698 Query: 734 IK------------------VNEDEMYPG---EAGIDIYNLTKYTRSNQNTCINQMPCVS 772 E++P I + +S +NT + M + Sbjct: 699 TTMVAMEPNDLDSDDSYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 758 Query: 773 LGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMPWNGYNFED 814 +G V D + EL G N V + + GYN ED Sbjct: 759 MGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGILVYTGYNQED 818 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLG---------PEEITAD-IPNVGEAALSK 864 S+++++ + F + + + + + +G E+ + D + K Sbjct: 819 SLILNQSAIDRGLFRSSYYRCYIDQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGK 878 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LD+ G+V G V+G D+L+GK P T P +D S + Sbjct: 879 LDDDGLVAPGTRVSGDDVLIGKTAPIDATAGMP-----------SRYSKRDCSTSMKANE 927 Query: 925 SGTVIDVQV-FTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 G V +V + T++G K + I ++ Q + Sbjct: 928 HGIVDNVLISTTKEGYRFTK--VRIRNVRTPQIGDKFASR 965 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 81/433 (18%), Positives = 147/433 (33%), Gaps = 97/433 (22%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIE---QDPEGQYGLEAAFRSVFPIQSYSGN------- 65 + L+ QLDSF +FI+ Q+ G + + Y Sbjct: 33 AVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVGYDDEAYDREQE 92 Query: 66 ------SELQYVSYRLGEPVFDVQ----------ECQIRGVTYSAPLRVKLRLVIYE--- 106 E+ + L +P + E ++R +TYSAPL V + L Y+ Sbjct: 93 KETKFVFEIHFGQVYLSKPTTVEKDGTITNMFPHEARLRNMTYSAPLYVDVDLNQYQVGR 152 Query: 107 -------REAPEGTVKDIKEQEVYMGEIPLMT------------------------DNGT 135 E V ++ ++G +P+M G Sbjct: 153 EVNVNDPSEDLGEPVATEHAKKEFLGYVPIMLRSLFCVLSDKDDADLSDLGECVYDQGGY 212 Query: 136 FVINGTERVIVSQ-----------LHRSPGVF--FDSDKGKTHSSGKVLYNARIIPY--- 179 FVING+E+VI++Q + P F + + +S + + I Y Sbjct: 213 FVINGSEKVIIAQERLSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPVSTLYIQMYHKG 272 Query: 180 -RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKL 237 RG+ ++ ++R D +P II RAL Y I++ V++++ D ++ Sbjct: 273 GRGA-IEGNQIRSTLPYIRTD----IPVVIIFRALGYVADRDIIEH----VVYDLTDGEM 323 Query: 238 QMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 P +F I+ GRR +AR + + ++ + E + V Sbjct: 324 MDLFRPSL----EEAFVIQRQDVALDFIGRRGSARDVTKEDRMRYAQAILQKEVLP-HVG 378 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQS-----GHKRIETLFTNDLDHGPYISETLR 352 +++ + G I A +L + L + + G KR++ + L Sbjct: 379 TEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLT 438 Query: 353 VDPTNDRLSALVE 365 D L E Sbjct: 439 KDVRKHLQRCLDE 451 >UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E3T5_TRIVA Length = 1142 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 123/306 (40%), Gaps = 66/306 (21%) Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 +++K+ A RR + GDK + RHG KGVI I P EDMPY E+G D+++NP Sbjct: 890 QVIKIKTADFRRPELGDKFSSRHGQKGVIGLIVPQEDMPYTEDGICPDMIMNPH------ 943 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 G ++ K+ Sbjct: 944 ----------GFPSRMTVGKM--------------------------------------I 955 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 E++ + G F + +I + L SG+ L G TGE + Sbjct: 956 ELVSGKVGILTGRIGNGTAFSSDRVKDIADDLIAAGYSYSGKDMLMSGITGEPLYAYIFF 1015 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G ++ L H+V DKM AR+TG +T+QP G+++ GG R GEME L YGAA L Sbjct: 1016 GPVFYQSLKHMVKDKMQARATGQVQYLTRQPTQGRSRQGGMRLGEMERDCLIGYGAASIL 1075 Query: 1288 QEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI-- 1335 E + + SD +V + + + MP + +L E+ ++GI Sbjct: 1076 YERMLISSDVYEANVCAKCGFIGYEGYCTHCKTKEYMKIVRMPYACKLLFYELMAMGIAP 1135 Query: 1336 NIELED 1341 + LED Sbjct: 1136 KVRLED 1141 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 111/623 (17%), Positives = 216/623 (34%), Gaps = 108/623 (17%) Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 VDPT L+ + + E T++ A L E + A + + Sbjct: 254 VDPTGAVGHLLMSSLQEIIKLEISTQDQAIQLIERRLKFLTITGIDATREERNMKGYKGR 313 Query: 413 EIEGSGIL------------SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 E S +L + + + L+ +D D GN+R+ GE+ Sbjct: 314 EFLRSMVLPHIPSTLTDFRRKSVFVGFMTRWLLLSAIDPRMIDGRDFFGNKRLELAGELL 373 Query: 461 ENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAK---PISAAVKEFFGSSQL---- 511 E F ++++ +S + + P ++ A I+ +K S Sbjct: 374 ELLFEDLFKTFNASMQKTVSRTINKSKGIDPSNIAQAMHSETITHGLKYAISSGNWNITR 433 Query: 512 --------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 SQ + + + L ++ RIS+ + + R ++P+ +G +CP +T Sbjct: 434 FKMMRAGVSQLLGRMSYLQFVSMVTRISS----HFEKTQKVAGARLLYPSQFGFICPSDT 489 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN- 622 PEG GLI + ++ + P R+ + +E+ S E N I N Sbjct: 490 PEGAQCGLIKNFALTVHVTVWADP-APARRTLLDLGVEELVVFSGEEISNNYIVMLNGEP 548 Query: 623 ----------------------------------------LDEEGHFVEDLVTCR-SKGE 641 E G L+ K + Sbjct: 549 IGIIDDPYSICRRFRQVRRRHWVDKFAAIWIVEAKKCINVSTEAGRVCRPLIIVEDHKSK 608 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN-----MQRQAV----PT 692 + DQV+ +++ ++ G +I +++ ++ L+ N +R+ P Sbjct: 609 LTQELMDQVNRGEINFDYLLDNG--IIEYVDVNEMTDCLIAFNDKDIEEERKNCVNDPPL 666 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 + + T +E A GV GVV ++ + M G+ I Sbjct: 667 AKGELRY-FTHLEIHNAQMLGVC-----AGVVPCPHHNQSPRNTYQCAM--GKQAIGPTA 718 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 L R +++T N P + V+ + + E+ GQN VA M ++G++ Sbjct: 719 LNIMHRVDKSTYFNCYPQQPM---VQTRTIR----LSRYHEMPCGQNAMVAIMSYSGHDI 771 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP-----EEITADIP-NVGEAALSKLD 866 ED++L+++ + ++ +L + ++ + G + + P N+ S LD Sbjct: 772 EDALLMNKASLDRGFGRRYYLSKLDLMLKNYQGGVIGDRIAPLDRERPENIASPQYSLLD 831 Query: 867 ESGIVYIGAEVTGGDILVGKVTP 889 GI+ G + G I K P Sbjct: 832 ADGIIRPGERIEKGMIYANKYVP 854 Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 47/232 (20%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP-IQSYSGNSELQYVSYRLG 76 P +L L+ +QL+SF FIE GL + I S + ++Y + + Sbjct: 34 IPLILKSTGLIKLQLNSFNDFIES------GLTKIMNANKEVIFSENPRVYIRYKNIYVD 87 Query: 77 EPVF-----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 P Q C++ TYS + V V TVK Q + ++P+M Sbjct: 88 RPKIRNQILTPQMCRLSDETYSGNVLVDYDFVN------GSTVKSFNNQCI--AKLPIML 139 Query: 132 ------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS 167 G FVINGTERV+ Q +SP + + Sbjct: 140 QSNRCYLYNASDETFAKYDECRYDPGGYFVINGTERVVHVQ-EQSP--YNRILIEHLANG 196 Query: 168 GKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ 219 K + ++ + +P ++ RA+ T++Q Sbjct: 197 NKTAVVNSSTSTHKTRVELIWKKDTLALHHNALSEDIPIFVLFRAMGVTSDQ 248 >UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae RepID=Q6E6F3_ANTLO Length = 1014 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 127/301 (42%), Gaps = 63/301 (20%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 +VK L R+ + GDK + RHG KGVI + P D+P+ E+G DI++NP G PSRM Sbjct: 765 MVKTCLRQVRQPEVGDKFSSRHGQKGVIGLVVPETDLPFSEDGQVPDIIMNPHGFPSRMT 824 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 +G+I+E G AA G + +A + ++ DLS + Sbjct: 825 VGKIIELISGKAAVFTGRQSDATVFREDITE--------------------DLSHILIKH 864 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 I V++G V G Sbjct: 865 GYSYCGKDTFTNGITGDVYEG----------------------------------YVFFG 890 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 +Y +L H+V DKMHARS G +++T+QP GK++ GG R GEME L YGA+ L Sbjct: 891 PVYYQRLKHMVADKMHARSRGPRAMLTRQPTEGKSREGGLRLGEMERDCLIGYGASAILC 950 Query: 1289 EMLTVKSD----DVNGRT-----KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 E L + SD + R K + + MP + +L +E+ S+ I + Sbjct: 951 ERLMISSDVFRAYICHRCGIIVYKNMCTLCKRGDPVPVDMPYACKLLFQELMSMNILPRI 1010 Query: 1340 E 1340 + Sbjct: 1011 K 1011 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 91/567 (16%), Positives = 194/567 (34%), Gaps = 101/567 (17%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL 484 + +++ L+ +DDID LGN+R G + F +R +K+ + Sbjct: 243 VAIMIRVLLQAELNMISMDDIDFLGNKRFELAGNLLSILFEDTFLRFNSELKKSIDKVLS 302 Query: 485 DTLMPQDM-------INAKPISAAVKEFFGSSQLS--QF-MDQNNPLSEITHKRRISALG 534 + QD+ + IS + + + +F M++ ++ I+ +G Sbjct: 303 KSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTVRRFRMERAGVTQVLSRLSYIAMIG 362 Query: 535 PGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 + + ++ FE R +H + +G +CP +TPEG + GL+ +L++ A+ Sbjct: 363 --SMAKIQSQFEKTRKISGPRSLHTSSWGMLCPADTPEGESCGLVKNLAILAEITT-DVP 419 Query: 588 ETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLD----EEGHFVEDLVTCRSKGE 641 ++ ++ + + S I+ + + N + V V R +G Sbjct: 420 QSDVEQLLFQLGVRDFRTCSGIDFYSKHSYLIFLNGTIVGICYNNNTLVRKFVEMRRRGV 479 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV----------- 690 S F V ++ +S+ + R L+ RQ + Sbjct: 480 VSQF----VSVYKNDEKRTISIAT------DGGRICRPLIIVENGRQMLEHEDLELLRRR 529 Query: 691 -----PTLRADK----PLVGTGMERAVAVDSGVT------------AVAKRGGVVQYVDA 729 + K + + +S + + G++ Y Sbjct: 530 YKNPDDLFKEGKVEFLDVNEENNTKIALRESNICRSTTHLEICEYSILGCVAGLIPYPHH 589 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN-----QMPCVSLGEPVERGDVLA 784 ++ + M G+ + L +Y R +T +N Q P VS + D+ Sbjct: 590 NQSPRNTYQCAM--GKQAMGFVALNQYRRF--DTLLNLLVYPQKPLVST----KITDI-- 639 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 + +L GQN VA M + GY+ ED++++++ + + + Sbjct: 640 ----VNFEKLPAGQNGMVAVMAYAGYDIEDALIINKGALDRGFGRCEVYRSYKHSLKRYS 695 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 G + + + G+ G V GD V K +P + +L + Sbjct: 696 NGMCDRISGSKH----------SDGVRGPGERVFDGDFFVYKESPTEDADFKFSGELYKN 745 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDV 931 + + V D + +G ++ Sbjct: 746 L----SPSVVDKVIVARSGEDQFMVKT 768 Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 132/762 (17%), Positives = 251/762 (32%), Gaps = 165/762 (21%) Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN-------- 133 +EC++R +TY + V + + K I ++ V++G++P+M + Sbjct: 8 PEECRLRDLTYCGNIYVDIEYTKHR--------KVIIKKNVFIGKVPIMLRSMLCHLEEK 59 Query: 134 ---------------------GTFVINGTERVIVSQ----LHR------SPGVFFDSDKG 162 G F++ G ERVI+ Q +R + G F S Sbjct: 60 RDDCETVRETYGHRECPLDMGGYFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTSVTS 119 Query: 163 KTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD 222 TH K + I+ R L + K+N+F +PA I+L+AL ++ + Sbjct: 120 STH--DKKSKTSIILKKR---LLY---LKNNVF-----TDSVPAVIVLKALGMVSDCEIA 166 Query: 223 LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV 282 F + +E++ L + + +++ ++++ Sbjct: 167 EF-------VGQEGALLEMLEPSLEHALQTGVHTQLQALDFISKLTRPRQNVSRIDEART 219 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD 342 L EV + I D ID + A + + L A+L+ I+ L + Sbjct: 220 ILYEVVLPNIPN-----DGIDMRRKAITVAI--MIRVLLQAELNMISMDDIDFLGNKRFE 272 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFS--EDRYDLSAV 400 + L D S L + + T++ F NL + + + + Sbjct: 273 LAGNLLSILFEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAIS 332 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV---- 456 R E + +LS+ I ++ + I++ + I G R + + Sbjct: 333 TGNWTVRRFRMERAGVTQVLSRLSYIAMIGSMAKIQSQFEKTRKIS--GPRSLHTSSWGM 390 Query: 457 --------GE---MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 GE + +N L + V + L L +D I K Sbjct: 391 LCPADTPEGESCGLVKNL--AILAEITTDVPQSDVEQLLFQLGVRDFRTCSGIDFYSKHS 448 Query: 506 ---FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE----RAGFEVRDVH-PTHYGR 557 F + + NN L R+ + G+ + E R + T GR Sbjct: 449 YLIFLNGTIVGICYNNNTL-----VRKFVEMRRRGVVSQFVSVYKNDEKRTISIATDGGR 503 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA 617 +C + ++ + + + L Y+ D ++ +L EE N IA Sbjct: 504 IC-------RPLIIVENGRQMLEHEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKIA 556 Query: 618 QANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 + + CRS ++++ ++ A LIP+ H+ + Sbjct: 557 ------------LRESNICRST-----------THLEICEYSILGCVAGLIPYPHHNQSP 593 Query: 678 RALMGANMQRQAV----------------PTLRADKPLVGTGMERAVAVD------SGVT 715 R M +QA+ + KPLV T + V + +G+ Sbjct: 594 RNTYQCAMGKQAMGFVALNQYRRFDTLLNLLVYPQKPLVSTKITDIVNFEKLPAGQNGMV 653 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 AV G DA I N+ + G ++Y K++ Sbjct: 654 AVMAYAGY-DIEDALII----NKGALDRGFGRCEVYRSYKHS 690 >UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putative n=1 Tax=Babesia bovis RepID=A7AM79_BABBO Length = 1171 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 84/365 (23%), Positives = 142/365 (38%), Gaps = 70/365 (19%) Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR----RKITQGDDLAP 1044 +D L D + +G ++ L++L + + K + + ++ +A Sbjct: 855 VDDLTGDSVIGVGQKVKKDDTLLKKLTQTSTGQIKVTDIKYQFNQPAYVDRVMCITTIAE 914 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 V + K+ L R + GDK + RHG KGV+ I E++P+ E+G D+++NP Sbjct: 915 SV--MYKIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLIMNPH--- 969 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 G ++ K+ Sbjct: 970 -------------GFPSRMTVGKM------------------------------------ 980 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E++ + G+ F+ I+ L +G+ LY G TGE E Sbjct: 981 --LELVAAKAAVLNGIFEDGTPFEADSLPAIERSLIKKGFHPAGKEILYSGITGEPLETL 1038 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G MY KL H+V DK+HAR+ G +T+QP G+++ GG R GEME L AYGA+ Sbjct: 1039 IFTGPMYYQKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCLIAYGAS 1098 Query: 1285 YTLQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 L E L + SD DV + +P + +L +E++++ Sbjct: 1099 GLLVERLMLSSDVFQMDVCHQCGFIGYDGWCAYCKQRGQTATVAIPYACKLLFQELQAMN 1158 Query: 1335 INIEL 1339 I + Sbjct: 1159 IRPNV 1163 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 125/669 (18%), Positives = 252/669 (37%), Gaps = 135/669 (20%) Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 ++ A + ++ + +G + + E L + N R+ AL+ + Sbjct: 260 IILKAMGVTTDEEIAQLIGTAGARE----YLPTGGDYILSIEDLYNEGINTRMDALLYVG 315 Query: 368 RMMRPGEPPTREAAESLFE---------NLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R +RP R A+ F N ED +D+ + R+ + +R + SG Sbjct: 316 RKVRP-----RPLAKGFFTSSKERLPKTNQNLIEDTHDI--LTRVLLSHIPMRNCRDFSG 368 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERA 474 + + + ++++ + +GK +DD DH GN+R+ G++ E+ F+ L ++++ Sbjct: 369 KIK--SLCLMARRVLSVASGKEPMDDKDHYGNKRLELAGQLISILFEDLFKAFLGQLKKQ 426 Query: 475 VKERLSL----------------GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + L+ D +P D+I + + A + G+ + +F + Sbjct: 427 IDATLTRHYEIVSNCHGGEQAKYPDCLVSLPTDIIT-RGMQATIST--GNWNIKRFRIER 483 Query: 519 NPLSE-ITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIG 570 + +S+ ++ IS LG +T+ + FE R + P+ G +CP +TPEG + G Sbjct: 484 SGVSQILSRLSYISCLG--MMTKTNSQFEKGRKVSKPRALQPSQLGLICPCDTPEGESCG 541 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSA---IEEGNYVIAQANSNL---- 623 L+ +LS+ G +E + + + LSA ++ V N + Sbjct: 542 LVKNLSLMNHVTTDGDIERLVELLYW-LGVESADALSARDCFDDDRNVTVFLNGIIIGVH 600 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 ++D+V R +G+ S F VSV E+ + + Sbjct: 601 QNGKQLIKDVVALRRRGKISAF---------------VSV-------FENYQQREVHISS 638 Query: 684 NMQRQAVPTL--RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD---ASRIVIKVNE 738 + R P + KPL+ + + + GV++++D + +I + E Sbjct: 639 DGGRLCRPLIVVENGKPLLTPKVLSQLVEGQIPLSKLFASGVLEWIDVNEENNTLIVMRE 698 Query: 739 DEMYPGEAGIDIYN---------LTKYTRSNQ---NTCINQMPCVSLG----------EP 776 ++ P ++I L + NQ NT M S+G + Sbjct: 699 SDITPKTTHLEISPMSMLGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLNRCDT 758 Query: 777 VERGDVLADGP--------STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 + V P + +L GQN+ VA M + GY ED++++++ + Sbjct: 759 ILHLMVYPQRPLVTTKAIQLVNFDKLPAGQNVIVAVMSYQGYEIEDAVVINKASSERGFS 818 Query: 829 TTIHIQELACVSRDTKLGPE---------EITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ++ + E +IT P + L ++ +G +V Sbjct: 819 RCYSLRRVTVEIEKLNHAAERPGGLNNRPQITNVTP------VDDLTGDSVIGVGQKVKK 872 Query: 880 GDILVGKVT 888 D L+ K+T Sbjct: 873 DDTLLKKLT 881 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 80/237 (33%), Gaps = 71/237 (29%) Query: 32 LDSFQKFI--EQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV---------- 79 ++S+ F+ E +S ++++ +GEP Sbjct: 57 INSYNNFVLREIKEIVNAPSNKMLKS-----DACKKFYIEFIDINVGEPTMSENNNKPIL 111 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 Q C++R +TYSAP+ V + E + + V +G +P+M + ++ Sbjct: 112 LTPQLCRMRDITYSAPMYVDVEYYNGE---------GVASKRVEIGRLPVMLRSCVCALS 162 Query: 140 GTERV--------IVSQLHRSP----GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 G R + S+L P G F K + L R+I E Sbjct: 163 GGMRANGNVDNFELSSRLGECPYDPGGYFIIKGVEKVILMQEQLSKCRVI--------VE 214 Query: 188 FDPKDNLFVRID--------------RRRKL-----------PATIILRALNYTTEQ 219 D K N+ + + +KL P IIL+A+ TT++ Sbjct: 215 TDVKKNICATVTSATAESKSRTAVVYKNQKLYVRHNSFTDDVPLCIILKAMGVTTDE 271 >UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L740_KORCO Length = 1121 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 161/827 (19%), Positives = 293/827 (35%), Gaps = 130/827 (15%) Query: 232 IRDNKLQMELVPERL--RGETA-----SFDIEANGKVYVEKGRRITARHI------RQLE 278 L +RL +GE F I + +V V + + I Sbjct: 123 KSKGCYLYGLDEKRLISKGEDPRDPGGYFIINGSERVLVMRDDIAPNKVIVEQTVAENKP 182 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 V I + ++ + Y+ G + + + + L G +R E + Sbjct: 183 YSHVAQIVSARAGLRTRLYLEYYM--RDGTIKASTGALRGIPVAMLLKALGLERDEDIVD 240 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 I + + A E + TRE A + Sbjct: 241 AISSVDDEIRSEFLYSLDDVQRRAEEE------GAQIITREEALDYIGRRLVQA----VP 290 Query: 399 AVGRMKFNRSLLRE-------EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 R+++ + LR E I+ + +++KL+ + GK E DD DH N+ Sbjct: 291 RADRIRYAKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKLLKVVRGKLEPDDKDHFSNK 350 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKER----LSLGDLD-----TLMPQDMINAKPISAAV 502 R+R G + + FR ++ R +KE+ LS G D + Q ++ + I A Sbjct: 351 RLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYDLDIRRIIQSQKLVTQRIIRAVA 410 Query: 503 KEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 + G +SQ +++ N ++ + H RR+++ P GL EVR H T GR+CP Sbjct: 411 TGAWPGGDLGVSQNLERTNYIATLHHLRRVNSPLPAGL----PLHEVRQTHGTSIGRLCP 466 Query: 561 IETPEGPNIGLINSLSVYAQT----NEYGFLETPY---RKVTDGVVTDEIHYLSAIEEGN 613 +ETPEG N+GL+ SL+++ + +E K E+ L+ + Sbjct: 467 LETPEGTNVGLVRSLAIFCDVTFGTDPEPIIELVLDWGAKPAKEAKPREVGSLTPVYVNG 526 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 ++A + + E +++ + + F+ + Sbjct: 527 RLVAFTDKPEELVSFLREKR-------------------AELNPE---------VNFIYN 558 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK--RGGVVQYVDASR 731 + + A+ R P + K + ME VDSG + + GVV+ +DA Sbjct: 559 REEGAVFINADAGRMRRPLIPVSK--LKEAMELLPKVDSGELSFTDLVKMGVVELLDADE 616 Query: 732 ---------IVIKVNEDEMYPGEA------GIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 I ++ + ++ ++ + M LGE Sbjct: 617 EEYAVVAQSIEEITDKHTHFDFAPYAMFGVAASQIPYAEHNNIPRDIIGSNMVRQGLGEY 676 Query: 777 VERGDVLADGPS------------TDLGEL------ALGQNMRVAFMPWNGYNFEDSILV 818 + + D + T E+ GQN+ VA +P +GYN +D++++ Sbjct: 677 LANWRLRFDSRAFLMFYPQRPIVETRGAEITGYNYRPSGQNLVVALLPMDGYNMDDALVM 736 Query: 819 SERVVQEDRFTTIHIQELACVSR-------DTKLGPEEITADIPNVGEAALSKLDESGIV 871 S+ + + + +R D P + E KL E GIV Sbjct: 737 SKGAIDRGAARAVFFRTYETEARRHAIIEGDKFENPVALKKVSGKKEEQYYQKLGEDGIV 796 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 V GGD+L+GK +P + +PE + + + + +D+S+ + G V DV Sbjct: 797 DPETYVEGGDVLIGKTSP---PRFSPELTVGSG-YPQYTFERRDTSISMRAWERGVVTDV 852 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 + T+ G EK R E + K + Q G+ R + Sbjct: 853 LLATKTGGEKLVRVNVRETRPPELGDKFATRHGQKGVLGMIYRHEDM 899 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 137/314 (43%), Gaps = 70/314 (22%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 G K+V+V + R + GDK A RHG KGV+ I EDMP+ G DIVL+P +P Sbjct: 859 GGEKLVRVNVRETRPPELGDKFATRHGQKGVLGMIYRHEDMPFTAQGIIPDIVLDPHTIP 918 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM IGQ+ E G +GA + VD + F Sbjct: 919 SRMTIGQLYEIIAGK-------------------------------VGALEGRFVDGTPF 947 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E V ++ E L SG+ +YDGRTG + P Sbjct: 948 MSEPV-----------------------EDLMEALVKLGFEYSGEEIMYDGRTGRMIKAP 984 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 V +G Y +L H+V DK+HAR+ G L+T+QP+ G+A+ GG R GEME L ++GAA Sbjct: 985 VFIGISYYQRLKHMVRDKIHARARGQMQLLTRQPVEGRARGGGLRLGEMEGEVLISHGAA 1044 Query: 1285 YTLQEMLTVKSDDV---------------NGRTKMYKNIVDGNHQMEPGM-PESFNVLLK 1328 +++ +SD + + + +++P + + + ++ Sbjct: 1045 SVIRDRYIDQSDKTIIYVCKECGTIAFFNQKTNEFFCPRCQSSVEVKPLITSYASKLFIE 1104 Query: 1329 EIRSLGINIELEDE 1342 E+ S +++ L E Sbjct: 1105 ELMSGHVDVRLSVE 1118 Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 109/323 (33%), Gaps = 64/323 (19%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD---- 81 L +Q++SF +F+E+ G++ + I+ N +L +G P D Sbjct: 22 NLADVQIESFNRFLER------GIQEVVDAFKEIE-LVENYKLILSRVYVGRPEIDEYDG 74 Query: 82 ------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT---- 131 E ++R Y AP+ +++++ ++K + V +G +P+M Sbjct: 75 SSLPAMPNEIRLRNADYIAPIELEIKVY--------AGGMELKTERVRIGHLPIMVKSKG 126 Query: 132 --------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 G F+ING+ERV+V + +P + Sbjct: 127 CYLYGLDEKRLISKGEDPRDPGGYFIINGSERVLVMRDDIAPNKVIVEQT--VAENKPYS 184 Query: 172 YNARIIPYRG---SWLDFE-FDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFE 226 + A+I+ R + L E + + R +P ++L+AL E I+D Sbjct: 185 HVAQIVSARAGLRTRLYLEYYMRDGTIKASTGALRGIPVAMLLKALGLERDEDIVDAISS 244 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 + L + R E I + GRR+ R I Sbjct: 245 VDDEIRSE--FLYSLDDVQRRAEEEGAQIITREEALDYIGRRLVQAVPR------ADRIR 296 Query: 287 VPVEYIAGKVVAKDYIDESTGEL 309 EY+ + + E + Sbjct: 297 YAKEYLRNNFLPHIGVSEEDNIV 319 >UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 86 RepID=Q4A245_EHV86 Length = 1156 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 134/369 (36%), Gaps = 85/369 (23%) Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD----------LAPGVLKIVKV 1052 D + Q D + E + + R + + D+ P VKV Sbjct: 841 GDVLIGKVVSMSLLQADPKEGEVRRDTKRDRSHVLRTDEPVVVDAVFLSKTPEGHGYVKV 900 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 R GDK + RHG KGV P D P +G DI++NP +PSRM IG + Sbjct: 901 RTRAIRIPMVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPDIIINPHAIPSRMTIGML 960 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 +E L K+ + Q+ Sbjct: 961 MEMVL--------SKVACYEGETQDGTP-------------------------------- 980 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 F G I + L+ + G LY+G +GE E + + Y Sbjct: 981 --------------FTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLESMIFIAPCYY 1026 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L H+V DK HAR+ G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L Sbjct: 1027 QRLKHMVVDKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLF 1086 Query: 1293 VKSD---------------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 +SD V ++ G H +P S +L++E+ Sbjct: 1087 EQSDIFECVACEKCGHFAREGTDDTSVKNSGMWCEHCKTGKHCTHTQLPYSMKLLIQELA 1146 Query: 1332 SLGINIELE 1340 + I+ LE Sbjct: 1147 AAHISATLE 1155 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 163/1021 (15%), Positives = 336/1021 (32%), Gaps = 216/1021 (21%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSYRLGEPVF------ 80 ++ Q++S+ FIE + + + + S + + + + + P Sbjct: 23 VAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNPSVNRPAIQESDGF 79 Query: 81 ----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTF 136 ++RG+TYS+ + V + I++R + + ++V+ Sbjct: 80 YKPITPHIARLRGLTYSSTVVVDV---IHDRINHTVSPPTLINRKVF------------- 123 Query: 137 VINGTERVIVSQL---HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 VI++Q+ RS + S+ + ++ DP Sbjct: 124 -----RNVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKV------------DPGGY 166 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 + + + +P T +IR N + + + + Sbjct: 167 FIISGNEKTLIPQT-----------------------KIRTNHVFI-FPSKHGEKHKYTA 202 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 ++ + + R T+ + + V + L Sbjct: 203 EVRSCHE----AKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSVF-----ILFRML 253 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD-PTNDRLSALVEIYRMMRP 372 E + D++ + D + L D N A+++ Sbjct: 254 GAESTDDIINYIGNI-----------PKDTEAILRIMLDSDTKQNYSRDAIMDWVGRNVT 302 Query: 373 GEP--PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 + T+E+ E +++ SE + + I +++ Sbjct: 303 SDTTRATKESREKYIDHIITSE------------LAPHMGLVNNPETNKKKMIFIGHMIQ 350 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV-----GLVRVERAVKERLSLGDLD 485 +L+ + G+ VDD D N+RI S G + R + + +++++ Sbjct: 351 RLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPREA 410 Query: 486 TLMPQDMINAKPISAAVKEFF--GSSQLS--------------QFMDQNNPLSEITHKRR 529 T ++++ K I++ +K F G+ +S Q + + ++ + R+ Sbjct: 411 TFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRK 470 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG---- 585 I+ + RE R +HP+ +G VC +TPEG GL+++L++ + Sbjct: 471 INT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAITTRIRIGAPMQP 526 Query: 586 ---FLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 L T + T Y+ N I +D+ + + R G Sbjct: 527 IAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHGNL 586 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 + + ++ V S +L+ L D + MQ P + +K Sbjct: 587 PFDC--SISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQN---PAVVPNK----- 636 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDA---SRIVIKVNEDEMYPGE-------------A 746 R G+++Y+D+ + + + ++ ++ E Sbjct: 637 ------------YTRMLREGIIEYIDSAEQTNMRVAIHHTDIEQDEYTHIEIHPALLTGI 684 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER--------GDVLADGP----STDLGEL 794 + + +S + ++G G VLA +T L EL Sbjct: 685 CVSQIPFCDHNQSPRIAYQAAQCKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRLEEL 744 Query: 795 ------ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 G VA M ++G+N +DS+L+++ + FT+ + + T E Sbjct: 745 LGTSVVRSGAVPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEEKGTGADIE 804 Query: 849 --EITADIP---NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 E +IP + EA SK+D+ G+ IG GD+L+GKV Q P+E Sbjct: 805 RFENPKNIPGCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKE---- 860 Query: 904 AIFGEKASDVK-DSSLRVPNGVSGTVIDVQVFTRD-----GVEKDKRALEIEEMQLKQAK 957 GE D K D S V V+D ++ V+ RA+ I + K + Sbjct: 861 ---GEVRRDTKRDRS-HVLRTDEPVVVDAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFSA 916 Query: 958 K 958 + Sbjct: 917 R 917 >UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenophorea RepID=Q236N3_TETTH Length = 1141 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 94/427 (22%), Positives = 161/427 (37%), Gaps = 79/427 (18%) Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV------LVAGGV 984 VF + E K + L+ K+ + + + + A+ +V + Sbjct: 765 TMVFKKYETEIQKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGASI 824 Query: 985 EAEKLDKLPRDRWLELGL---TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 + L L D N + + K + +++ R G+ Sbjct: 825 NNGDVLFNKYTPLLTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQDGNV 884 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 I+K + RR + GDK + RHG KG+I I EDMP+ E G D+++NP Sbjct: 885 -------IIKTIVRETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPH 937 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 G PSRM + G + +G K + Q + Sbjct: 938 GYPSRMTV--------GKLLELLGSKAAVLSGQFKYGT---------------------- 967 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 F G K A++ +L +G+ + G TGE Sbjct: 968 ------------------------AFGGDKMADLSSILVQNGFSYTGKDVIISGITGEYM 1003 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + V G ++ +L H+V DK+HAR+ G + +T+QP G+A+ GG R GEME +L A+ Sbjct: 1004 QCYVFCGPVFYQRLKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEMERDSLLAF 1063 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKN---------IVDGNHQMEPGMPESFNVLLKEIRS 1332 ++ L E L + SD + + + + + MP + +L +E+ S Sbjct: 1064 ASSNLLIERLMISSDKFSVQVCEKCGFIQHTNSCKMCQTDQVSKVVMPYACKLLFQELLS 1123 Query: 1333 LGINIEL 1339 + I +L Sbjct: 1124 MNIKPKL 1130 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 127/748 (16%), Positives = 253/748 (33%), Gaps = 133/748 (17%) Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 F I+ KV++ + + R + +K+ + V + K + I + Sbjct: 152 RGYFIIKGVEKVFLIQEQLADNRIFIEEDKNKELVANVKSNTVDTKSITSLIIKNHKIYV 211 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLF------TNDLDHGPYISETLRVDPTNDRLSAL 363 ++ + + LL G + + +F + L+ E + + AL Sbjct: 212 KVSSFSK-PIPLLIFFKAYGVESEQEIFQLIGTEEHLLNRLALCLEDIEQSQVYTQQQAL 270 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 + + +RP + E R ++ V Sbjct: 271 EYLSKRLRPKTFQD----KKYSSRNPVDEARDIITNVVLCHIPCKNYNYYP------RAI 320 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + ++LI+ + ++D D+ GN+R++ G E F + V++ LS Sbjct: 321 FLGLMARRLIEALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFNMMVRKELSKEI 380 Query: 484 LDTLMPQDMINAK----------PISAAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRI 530 I + I+ + G+ + +F MD + I Sbjct: 381 EKHKNKSYPIKNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQVLARISYI 440 Query: 531 SALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT-- 581 +A+G +TR + F+ R + +H+G VCP +TP+G + GL +LS+ A Sbjct: 441 AAIG--MMTRMNSQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLMAHITI 498 Query: 582 -NEYGFLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNL----DEEGHFVEDLV 634 + L T + + ++I + S+ E E + N + + F + L Sbjct: 499 EEKKNVLST----IALNLGMEDIGHYSSGEIHEDKNYMVFLNGQIIGMHRDPEAFAQKLR 554 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 R +G+ + +ST +L+ DD + + + Sbjct: 555 FMRRRGKIG-------TTISISTN-----SEKRAVYLDTDDGRLC--------RLLIVVE 594 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR-----IVIKVNEDEMYPGEAGID 749 KPL+ + R G+++Y+D + I IK + ++ Sbjct: 595 NGKPLITNDHLNDLKEKRKSYLDLIRMGLIEYIDVNEEDNCYIAIKQEDIPNRSKTTHME 654 Query: 750 IYNLT---------KYTRSNQ--------------------------NTCINQMPCVSLG 774 I LT Y NQ +T + Q + Sbjct: 655 IDPLTLLGVVSGLVPYPHHNQASRNTFQCAMGKQALGIIGSTSMNRVDTILYQ--LIYPQ 712 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 P+ + V+ + G N +A + ++GY+ ED+ ++++ + T+ + Sbjct: 713 TPLLKTKVI---EYAGYDKFPAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFK 769 Query: 835 ELACVSRDTKL-GPEEITADIPNVGEAALSK-----------LDESGIVYIGAEVTGGDI 882 + + K+ G E+ P E + K LD+ G +GA + GD+ Sbjct: 770 KYETEIQKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGASINNGDV 829 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKA 910 L K TP LT E++ R I + Sbjct: 830 LFNKYTP----LLTLEQQRGRDILNNNS 853 Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 99/770 (12%), Positives = 228/770 (29%), Gaps = 152/770 (19%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGNSELQYVSYRLGEPVFD-- 81 +S + SF FI L+ S + + L+Y + P D Sbjct: 25 FVSHHIQSFNYFINIK------LQQIITSSMNKELRLDTDNSFLLEYTKIYIEPPAHDNK 78 Query: 82 ----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT------ 131 QE ++ +Y+ + V L K+ ++V +G++P+M Sbjct: 79 TMMLPQEARLSNSSYAGNIYVDCELTF-------NGKKEDSLRKVNIGKMPIMLGSSHCN 131 Query: 132 -------------------DNGTFVINGTERVIVSQ-LHRSPGVFFDSDKGKTHSSGKVL 171 G F+I G E+V + Q +F + DK K + Sbjct: 132 LIKALELGQVHKLQECANDPRGYFIIKGVEKVFLIQEQLADNRIFIEEDKNKELVANVKS 191 Query: 172 YNARIIPYRGSWLDFEFDPKDNLFVRI-DRRRKLPATIILRALNYTTEQILDLFFEKVIF 230 + ++V++ + +P I +A +EQ + Sbjct: 192 NTVDTKS-----ITSLIIKNHKIYVKVSSFSKPIPLLIFFKAYGVESEQEIFQLIGTEEH 246 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 + L +E + ++ + + + ++ R T + + ++ V + Sbjct: 247 LLNRLALCLEDIE-----QSQVYTQQQALEYLSKRLRPKTFQDKKYSSRNPVDEARDIIT 301 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP-YISE 349 + + + + ++ L+ L + N + E Sbjct: 302 NVVLCHIPCKNYNYYPRAIFLG---LMARRLIEALDDPSKIDKRDYYGNKRMKCAGWYLE 358 Query: 350 TLRVDPTN-----DRLSALVEIYRMMRPGEPPTREAAESLFEN--LFFSEDRYDLSAVGR 402 L D R EI + + P + ES+ E ++ + + G Sbjct: 359 LLFEDKFKQFNMMVRKELSKEIEKH-KNKSYPIKNRVESILEKNHDIITQGLNNAISTGN 417 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 + + + + +L++ I + + + + + R++ + + Sbjct: 418 WTI-KRFRMDTVGVTQVLARISYIAAIGMMTRMNSQFKKS--------RKLTGPRSLLGS 468 Query: 463 QFRV------------GLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 + + GL + + +++ + ++ +N + Sbjct: 469 HWGLVCPADTPDGESCGLTKNLSLM-AHITIEEKKNVLSTIALNLGMEDIGHYSSGEIHE 527 Query: 511 LSQFM---------DQNNPLSEITHKRRISALGPGGLT-RERAGFEVRDVHPTHYGRVCP 560 +M +P + R + G G T E R V+ Sbjct: 528 DKNYMVFLNGQIIGMHRDPEAFAQKLRFMRRRGKIGTTISISTNSEKRAVY--------- 578 Query: 561 IETPEGPNIGL---INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA 617 ++T +G L + + + L+ + D + I Y+ EE N IA Sbjct: 579 LDTDDGRLCRLLIVVENGKPLITNDHLNDLKEKRKSYLDLIRMGLIEYIDVNEEDNCYIA 638 Query: 618 QANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 ++ + R + +M++ ++ V + L+P+ H+ A+ Sbjct: 639 -----------IKQEDIPNR----------SKTTHMEIDPLTLLGVVSGLVPYPHHNQAS 677 Query: 678 RALMGANMQRQAV----------------PTLRADKPLVGTGMERAVAVD 711 R M +QA+ + PL+ T + D Sbjct: 678 RNTFQCAMGKQALGIIGSTSMNRVDTILYQLIYPQTPLLKTKVIEYAGYD 727 >UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium RepID=Q5CPZ8_CRYPV Length = 1287 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 82/304 (26%), Positives = 126/304 (41%), Gaps = 64/304 (21%) Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 +I KV RR + GDK + RHG KGV+ I ED+P+ E G D+++NP Sbjct: 1033 GNQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIMNPH---- 1088 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 G ++ K+ ++ + V Sbjct: 1089 ------------GFPSRMTVGKLLELISSKASV--------------------------- 1109 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 L N R G F G E + L SG+ L G TGE E + Sbjct: 1110 ------LDGNYRYGT-----AFGGTPLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYI 1158 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 VG +Y KL H+V DKMHAR G ++T+QP G+++ GG R GEME L AYGA+ Sbjct: 1159 FVGPIYYQKLKHMVLDKMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASN 1218 Query: 1286 TLQEMLTVKSD----DVNGRTKM-----YKNIVDGNHQME-PGMPESFNVLLKEIRSLGI 1335 L E L + SD +V + + Y + + + +P + +L +E++++ + Sbjct: 1219 LLIERLMLNSDVFETNVCNQCGLFGYNNYCHYCKSSQDVSIIRLPYACKLLFQELQAMNV 1278 Query: 1336 NIEL 1339 + Sbjct: 1279 CPRI 1282 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 128/773 (16%), Positives = 261/773 (33%), Gaps = 164/773 (21%) Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 G +V KG QL K+ + ++E+ ++ V + + L+ N +L Sbjct: 251 GGYFVVKGTEKAILMQEQLSKNRI-IVELDNKHNYCATVTSTTAESKSRTLVVFKNGKLY 309 Query: 319 LD------------LLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTNDRLSAL 363 L +L + + I + N+ H I +L+ + + AL Sbjct: 310 LRHNSFSDEIPLCIVLKAMGIETEQEIFFMIGNEPHHQEGIINSLQEVHQEGIFTQRQAL 369 Query: 364 VEIYRMMRPGEPPTREAAESLFE-NLFFSEDRYDLSAVGRMK--------------FNRS 408 + + + + T ++ + N S + + G K NR Sbjct: 370 LFMSKKAKSKFKSTFGSSRGFDKSNAEESAENSGFTEFGGSKSSLCGTSIDDVLETLNRV 429 Query: 409 LLREEIEGSGILSKD--DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 LL L + + K+++D +DD D+ GN+RI G++ F Sbjct: 430 LLSHIGTIYTDLHPKALFLCLMAKRVLDASEDNSLLDDKDYYGNKRIELAGQLISILFED 489 Query: 467 GLVRVERAVKERL-------------------------SLGDLDTLMPQDMINAKPISAA 501 R K+++ + D +P D+I +A Sbjct: 490 LFKRFSVLTKKQIDQTLIRYFQTRDASKAGTGRDDSNSTYPDCFRNLPTDIITRGMQTAL 549 Query: 502 VKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRDVHPT 553 G+ + +F M+++ +T I++LG +TR + FE R + P+ Sbjct: 550 ST---GNWSIKRFRMERSGMTQVLTRFSYIASLGI--MTRVDSQFEKARKVSGPRALQPS 604 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNE------------------------YGFLET 589 +G +CP +TPEG + GL+ +L++ F Sbjct: 605 QWGILCPCDTPEGESCGLVKNLALTTHITTDHCPQYLTSLLFTLGVQDISSCSYLDFNTK 664 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS--NLDEEGHFVEDLVTCRSKGESSLFSR 647 K+++ + +E + +++ YV + + L R KG F Sbjct: 665 QSEKLSNEDLKNESSGKNNVKKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVS 724 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK---------- 697 +++ S+ Q+ + G L R L+ + Q VP L+ + Sbjct: 725 IFCNHIH-SSVQIATDGGRL---------CRPLIIVD---QGVPRLKEEHIEQLKRGEII 771 Query: 698 --PLVGTGMERAVAVDSG-----------------------VTAVAKRGGVVQYVDASRI 732 + G+ + V+ ++ + G++ Y + ++ Sbjct: 772 FSDFISQGILEWIDVNEENNLLIALRDENLTNETTHLEIDPLSILGVVSGLIPYPNHNQS 831 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + M G+ + ++ R + + P +P+ + + + Sbjct: 832 PRNTYQCAM--GKQVMGSVGFNQFLRCDSVLYLLVYPQ----KPLCKTRTI---EMINFE 882 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG-PEEIT 851 +L GQN VA M + GY+ ED+I++++ V ++ + G E + Sbjct: 883 QLPAGQNSSVAVMSFAGYDIEDAIVMNKASVDRGFARCFVMKRQTIELQKLPNGLSERVV 942 Query: 852 ADI---------PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 I S LD G+ +G +V+ DI+V K++P + Sbjct: 943 RPISVGSGNTGNRRFSFKNDSILDNDGVCNVGVQVSEDDIIVNKMSPINTREY 995 >UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=C5YHJ3_SORBI Length = 1251 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 98/440 (22%), Positives = 170/440 (38%), Gaps = 92/440 (20%) Query: 930 DVQVFTRDGVEKDK-RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 D V R +E+ R L ++ + + K+++ L+ E+ F ++++ + K Sbjct: 875 DSLVLNRASLERGMFRTLHLKSYKAQVENKEITRRLKHRESINFGKVQS-------KRGK 927 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGV 1046 +D L + +G + + + +++E + K +K + ++ DD Sbjct: 928 VDSLDSEGLPYVGASLQSGDIVIGKVSESGEDHSAKLMHTEKGMVDKVVLSANDD----G 983 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + V L R GDK A HG KGV+ ++ E+ P+ G DIV+NP G P+R Sbjct: 984 VNFATVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTR 1043 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 GQ+LE LG Sbjct: 1044 QTPGQLLEAALGKG---------------------------------------------- 1057 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + + +R P TP D I E L G+ + +G+TGE+ + V Sbjct: 1058 ---IAMGGKVRYATPFTTPTVD-----VITEQLHKAGFSRWGEESVLNGQTGERMKSLVF 1109 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G + +L H+ +DK+ R+TG VT+QP+ K +FGG +FGEME + A+GAA Sbjct: 1110 MGPTFYQRLVHMAEDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAAAN 1169 Query: 1287 LQEMLTVKSD----DVNGRTK--------------------MYKNIVDGNHQMEPGMPES 1322 L E L SD + + + +P Sbjct: 1170 LHERLFTLSDFSQMHICQACQRVANVIMRPAEGGSKKVHGPYCMFCRSAERIVRVNVPYG 1229 Query: 1323 FNVLLKEIRSLGINIELEDE 1342 +L +E+ +GI ++ + E Sbjct: 1230 SKLLYQELFCMGICLKFDTE 1249 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 51/351 (14%), Positives = 117/351 (33%), Gaps = 54/351 (15%) Query: 252 SFDIEANGKVYVEKGRRITARHI-RQLEKDDVKLIE-VPVEYIAGKVVAKDYIDESTGEL 309 F I+ KV++ + +R +R D + + E I K+V + Sbjct: 280 YFLIKGTEKVFIAEEQRFLSRIWITDYPSWDASYLSQIKREKINIKLVPSKRNESCKVIT 339 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS-------- 361 I + + ++ + + LD I + Sbjct: 340 IYFMGTIIPIWVVFFALGVSSDKEAFDMIDILDCDASIVNIISSTIKESHEEFEGFRAPG 399 Query: 362 -ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 A + +++R + P +E+ + F +G+ Sbjct: 400 RACQYVDKLIRKSKFPPKESFDEYVCRYMF-----------------------PSVNGVR 436 Query: 421 SKDDII-DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 SK + ++K L+ +G + D+ D N+R+ ++ + + R E + + + Sbjct: 437 SKALFLGYMVKCLLMAYSGNRKCDNKDDFRNKRLGLACQLLRRELWTHIKRAEWRMVKLM 496 Query: 480 SLGDLDTLMPQDM---INAKPISAAVKEFFGSSQLSQ------------FMDQNNPLSEI 524 + QD+ ++A I+ + F + + + NPL + Sbjct: 497 QRDLSNDGNLQDLRRYVDASIITNGLNRAFSTGSWRHPYLKARCSGVVATLRRTNPLQMM 556 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 + R+ + A + R +P+ +G++C + TP+G G + +L Sbjct: 557 SDLRK----TRQWVAYSGAVGDARYPNPSFWGKLCFLSTPDGEKCGFVKNL 603 Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 27/150 (18%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 E GQN V+ G+N EDS++++ ++ F T+H++ + ++ Sbjct: 854 EYFNGQNAIVSINVHQGFNQEDSLVLNRASLERGMFRTLHLKSYKAQVENKEITRRLKHR 913 Query: 853 DIPNVGE-----AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 + N G+ + LD G+ Y+GA + GDI++GKV+ GE Sbjct: 914 ESINFGKVQSKRGKVDSLDSEGLPYVGASLQSGDIVIGKVSESGE--------------- 958 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 D S ++ + G V V + D Sbjct: 959 -------DHSAKLMHTEKGMVDKVVLSAND 981 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 60/179 (33%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYS--------GNSELQYVSYRL 75 L+S Q++S+ +F+ +GL+ F S+ I Y ++ +++ L Sbjct: 124 LVSHQINSYNQFV------SHGLQDLFDSLGEITVEPDYDPSNKSGAWKHATIKFGRVEL 177 Query: 76 GEP--------------VFDVQECQIRGVTYSAPLRV--KLRLVIYEREAPEGTVKD--- 116 EP F + +++ +TY++ + V ++ I ++ T KD Sbjct: 178 SEPVFMVDNLDLEQQDLKFKPRHARLQRMTYASRMNVEMTAQVYILDKSDKAKTGKDTHV 237 Query: 117 ------IKEQEVYMGEIPLMTDN------------------GTFVINGTERVIVSQLHR 151 + ++V MG +P+M + G F+I GTE+V +++ R Sbjct: 238 HRREIMTETKQVSMGLLPVMVKSNLCWLHKLQESDCQFDFGGYFLIKGTEKVFIAEEQR 296 >UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RNV9_RICCO Length = 1203 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 146/381 (38%), Gaps = 83/381 (21%) Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAE--QYDELKHEFEKKLEAKRRKITQGDDL 1042 + ++D L D + +G + + + AE +K + ++ ++ ++ D+ Sbjct: 877 KIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDE- 935 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 G V V L R GDK + HG KGV+ + E+ P+ G DIV+NP Sbjct: 936 --GKNFAV-VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHS 992 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 PSR GQ+L Sbjct: 993 FPSRQTPGQLL------------------------------------------------- 1003 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 E + M ATP F I L G R+Y+GRTGE Sbjct: 1004 ----EAALGKGIACGGSMKYATP-FSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVR 1058 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + +G + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+G Sbjct: 1059 SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1118 Query: 1283 AAYTLQEMLTVKSDD----VNGRTKM------------------YKNIVDG-NHQMEPGM 1319 A+ L E L SD + + K Y + + + ++ + Sbjct: 1119 ASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNV 1178 Query: 1320 PESFNVLLKEIRSLGINIELE 1340 P +L +E+ S+GI+++ E Sbjct: 1179 PYGAKLLCQELFSMGISLKFE 1199 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 159/974 (16%), Positives = 308/974 (31%), Gaps = 178/974 (18%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQ 86 L+S Q++S+ FI G++ AF S G ++ P +D + Sbjct: 76 LISHQINSYNDFI------NNGIQKAFDSF-------GELVVE--------PGYDPSKKG 114 Query: 87 IRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIV 146 Y++ K+ L + K + + MT + +N + V Sbjct: 115 ENEWRYASVKFGKVALEKPTFWSGADEHKMLPRH----ARLQNMTYSSKMKVNVSVEVYT 170 Query: 147 SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPA 206 ++ RS +GK Y +D E DN + I LP Sbjct: 171 RKVVRS----------DKFKTGKDQY-----------VDKEVLNTDNRNITI---GSLPV 206 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + T + D F+ + + ++ + E++ + V + Sbjct: 207 MVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSE 266 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 + +R + ++ ++ + + ++ + L A + +++ + Sbjct: 267 IKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEI---PLWILFFALGVTSDKEVIDLIG 323 Query: 327 Q-SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 S RI +F + + + AL + R +R P E + Sbjct: 324 YGSNDARIVNIFFASIHDADE-----KTEGFRRGKEALEYVVRQIRGTRFPPGENEDFFL 378 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 L S + ++K L+ NG+ + ++ Sbjct: 379 -----------------------LYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNW 415 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS---LGDLDTLMPQDMINAKPISAAV 502 D N+R E+ E + +V + R + + L GD D + ++A ++ + Sbjct: 416 DSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGL 475 Query: 503 KEFFGSSQLSQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 F + S + + NPL + R+ + + R Sbjct: 476 SRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRY----HVQYTGKVGDARF 531 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI 609 HP+H+GRVC + TP+G N GL+ +L+ + + + G+ S + Sbjct: 532 PHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPEDSHSDL 591 Query: 610 EEGNYVIAQAN-SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ---VVSVGA 665 +E + V + E+ V + QV+ QQ + S Sbjct: 592 DEKDKVFLNGEWVGVCEDSRL---FVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAG 648 Query: 666 SLIPFL---EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG--------- 713 ++ L ++ A G N Q++ + VGT E + G Sbjct: 649 RILRPLLVVQNLHKIEAFKGGNCTFQSL-LDKGIIEFVGTEEEEDCSTAWGIKFLLSGVD 707 Query: 714 --------------VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + G++ + + +V + I R Sbjct: 708 GKQSLKYTHCELDMSFLLGLSCGIIPFANHDH-ARRVLYQAQKHSQQAIGFPTTNPNIRV 766 Query: 760 N---QNTCINQMPCVS------LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 + Q P LG+P GD EL GQN VA GY Sbjct: 767 DTLSHQLYYPQRPLFRTVTSDCLGKP---GDTRGHNGIVPKPELYNGQNAIVAVNVHLGY 823 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD-------IPNVGEAALS 863 N EDS++++ ++ F + HI+ + +L + D IP+ + Sbjct: 824 NQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKI-GRVD 882 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 LD+ G +IGA + GDI++G+ G D S+++ + Sbjct: 883 SLDDDGFPFIGANLQSGDIVIGRCAESGP----------------------DHSIKLKHT 920 Query: 924 VSGTVIDVQVFTRD 937 G V V + + D Sbjct: 921 ERGMVQKVVLSSND 934 >UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta RepID=A9TK27_PHYPA Length = 1238 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 91/404 (22%), Positives = 158/404 (39%), Gaps = 92/404 (22%) Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 AK+ + L ++ F + L G + KL + + + + ++L Sbjct: 908 AKRSRNASLNKIDEDGFPHLGDYLEKGDIIIGKLTA---------EMGNPKLADSSQRLR 958 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 ++ L + +I KV L RR Q GDK + HG KGV Sbjct: 959 ---AHENGRVDQVLLSSEE----------DGHRIAKVRLRCSRRPQAGDKFSSMHGQKGV 1005 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 I + ED+P+ G DI++NP +P+R +GQ+LE+ L K+ A+ Q Sbjct: 1006 IGAVLNQEDLPFTRQGVVPDIIINPHALPNRQTVGQLLESLL--------GKLMAVRGTQ 1057 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 Q VA ++ + + Sbjct: 1058 QSVAPFQKQ---------------------------------------------SATRKF 1072 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR-STGSYSLV 1254 + L + G + +G TG + +++G + +L+H+V+DK+ R S G + Sbjct: 1073 MDQLHQSEYQRGGSESMTNGTTGMRLNSLISIGATFYQRLDHMVEDKIKYRGSGGPVDAL 1132 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN--------------- 1299 T+QP+ + GG +FGEME + +GA+ TL+E + SD Sbjct: 1133 TRQPVKNRKNMGGVKFGEMERDCMIGHGASVTLRERCFLLSDPYAMLVCSSCRRPSGHTD 1192 Query: 1300 -GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R + K G H ++ +P S +L +E+ S+GI + LE + Sbjct: 1193 PSRRRFCKFCCTGKHVVQIQIPYSCKLLWQELLSMGITLFLETK 1236 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 169/1019 (16%), Positives = 323/1019 (31%), Gaps = 233/1019 (22%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFR---SVFPIQSYS----------GNSELQYVSY 73 L+ L SF +F+E YGL A F S I +S + + Y Sbjct: 89 LVEHHLRSFNEFME------YGLPAMFEEAGSFDCIPDHSVLVDSGIGVRKWARIVYGEV 142 Query: 74 RLGEPVFD-------------VQECQIRGVTYSAPLRVKLRLVIY----EREAPEGTVKD 116 +G+P E ++R ++YSA L V + L + ++ + + Sbjct: 143 AVGKPYTTFTREGVKEVVDLLPHEARLRNLSYSAHLYVNMTLEVRSQGNKKTQNPEDMIE 202 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 K + +G++P V+V+ + Sbjct: 203 TKTDTICVGKVP---------------VMVN---------------------SSFCHLHG 226 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 + + S D F I K+ E+ + V + R + Sbjct: 227 LSEKDSVAKGHCSFDDGGFFIIKGSEKVLIA--------QEEKAHQSIY--VSYLKRTDT 276 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 P RG + + GK +V+ R A + + E + + Sbjct: 277 WIATYSPT-WRG--FNSNQMNRGKTFVKLRMRKKAELL--------VGVPGLTEPVPLVI 325 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 + + S E + + + + L S + + Y + + Sbjct: 326 LFRALGTSSDKEFLESICYDSTDSRFHDLLLSSIWDADLILEEFQSRISYPAGASAIKSV 385 Query: 357 NDRLSALVEIYRMMRPGEP-PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 D++ ++ + +R P+ EA +++ LF E Sbjct: 386 RDQILSVRFLGTKLRNSRHVPSVEAGKTIIGQLFVH----------------------TE 423 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 G + ++ +L G+ DD DH N+R+ G++ +QFR + +ER V Sbjct: 424 GGYTRKAMLLGYMVNQLCSTFLGRRLEDDKDHFKNKRLDLTGQLLSHQFRKAMAHLERDV 483 Query: 476 KERLS--------LGDLDTLMPQDMINAKPISA------AVKEFFGSSQLSQFMDQNNPL 521 K RL L L T + + ++ + SA E SS + + + NP+ Sbjct: 484 KRRLHPYLVKGRDLAPLKTYVTEAIVTKQMQSAFTLGNWNTNEGLKSSGVVAVLKRMNPM 543 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRD--------VHPTHY------GRV------CPI 561 + ++H R+ P + + R + PT G + C + Sbjct: 544 ATLSHLRQFRLNLPPPM---KPTDPARHPNYSYWGRICPTQTSDGAECGLIKSLALTCVV 600 Query: 562 --ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV-TDGVVTDEIHYLSAIEEGNYVIAQ 618 +TPE P + +++ +++ + K+ +G + +A I Sbjct: 601 SSDTPEEPVLHVLSDCGMHSLEEITPLTISMAEKIFVNGRWVGIFYDYNAT----LAIVA 656 Query: 619 ANSNLDEEGHFVEDLVTCR----------------------SKGESSLFSRDQVDYMDVS 656 L E ++ R K + S+ + + Sbjct: 657 TLRQLRREQLLHGEIEVARDPKTKAVHIHTDAGRLLRPLLIVKEQKLAMSKQHLKTLRAM 716 Query: 657 TQQVVSVGASLIPFLEHDDA---------NRALMGANMQRQAVPTLRADKPLVGTGMERA 707 ++Q + FL AL+ N D PL T E Sbjct: 717 SKQ--ESAEACWNFLLEQQVVELLGTEEEEGALIALNRDDLERARKDPDAPL-YTHSEID 773 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN---QNTC 764 V+ V+ ++D ++ + + E + + + Y RS+ Sbjct: 774 VS-----YIFGLGASVIPFLDHNQASRNLYQAEKHC-KQAMGFYTSNLSGRSDCSGHQLF 827 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 Q P V+ D L E+ GQ V+ GYN EDSI+++ + Sbjct: 828 YPQKPLVTTRTW----DYL------KKPEITNGQVAIVSIQC-CGYNQEDSIIMNRASID 876 Query: 825 EDRFTTIHIQELACVSRDTKLG--PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 F ++H + R + + + A+L+K+DE G ++G + GDI Sbjct: 877 RGLFRSMHFKTYRGEERHNVIEHFAKPSISIAKRSRNASLNKIDEDGFPHLGDYLEKGDI 936 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 ++GK+T A G + DSS R+ +G V V + + + + Sbjct: 937 IIGKLT---------------AEMGN--PKLADSSQRLRAHENGRVDQVLLSSEEDGHR 978 >UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQY8_ENCCU Length = 1110 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 117/303 (38%), Gaps = 63/303 (20%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 ++K L R + GDK + RHG KGV+ + EDMP+++ G DI++NP Sbjct: 862 LIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDIIMNPH------- 914 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 G ++ KI E Sbjct: 915 ---------GFPSRMTVGKI--------------------------------------VE 927 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 ++ + +G + + F + ELL SG+ G TG + G Sbjct: 928 LISGKAGVLEGQILDSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGAPLAAYIFFG 987 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 ++ +L H+V DK+H R+ G +++T+QP G+++ GG + GEME L YGA+ + Sbjct: 988 PVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLIT 1047 Query: 1289 EMLTVKSDDVNGRT---------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 E L SD K G ++ MP + +L +E+ S+ I L Sbjct: 1048 ERLMTSSDVFEAYVCRSCGVLAFKGCCVACKGTKPVKVKMPYACKLLFQELMSMNILPRL 1107 Query: 1340 EDE 1342 E Sbjct: 1108 HIE 1110 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 130/712 (18%), Positives = 260/712 (36%), Gaps = 134/712 (18%) Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 + ++ +E G + + + V + + +E ++ A Sbjct: 174 SKNRIIIESGPKGLFASVTSSTDEHKSKTSVTTRDDCYYLKNSMFSEEVPVVIMMKALGL 233 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI--YRMMRPGE 374 + +A+ + I P E + R AL+ I Y ++P + Sbjct: 234 VQDREVAECVGKEYFEIMV---------PSFGECMSK-GIFTREQALLYISSYIKLKPED 283 Query: 375 PPTREAAESLFENLFFSEDR--YDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 E L E + + DL G I ++++L Sbjct: 284 NRIEEVLTVLSEKVLPNVQIEGCDLRKKGIY---------------------IALMVRRL 322 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR--------VERAVKERLSLGDL 484 + DD D +GN+R G++ F R +++ + +R + Sbjct: 323 AQTKLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQEF 382 Query: 485 DTLMPQDMINAKPISAAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRE 541 D L ++ A I++ + G+ L +F M+++ ++ ISALG +T+ Sbjct: 383 DALTFLNL-QANMITSTLARAISTGNWNLKRFRMERSGVTHVLSRHSYISALG--MMTKI 439 Query: 542 RAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT----NEYGFLETP 590 + FE R +H + +G +CP++TPEG + GL+ +L++ A+ + L+T Sbjct: 440 NSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTNSDTKPILDTV 499 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFS 646 Y+ GVV Y I + + N ++ + VE R KG F Sbjct: 500 YKL---GVVDINSVYTREIHQKDMFSVFLNGDIIGITNRADFLVEQFKLHRRKGLVGKF- 555 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR--QAVPTLRADKPLVGTGM 704 V V+ ++V+ + + ++ R L+ + R Q + + + D+ L + Sbjct: 556 ---VSIYKVTVERVIHIAS------DNGRVCRPLIIIDKNRINQTIISNQMDECLKALNI 606 Query: 705 ERAVAVDSGVTAVA-----------KRGGVVQYVDASR---IVIKVNEDEMYPGEAGIDI 750 VA++SG + G ++Y+D + ++ + +++ ++I Sbjct: 607 SEKVAIESGKSLFDCYLKYKSFTDLLEEGFIEYLDVNEENDCLVALKPEDIGEETTHLEI 666 Query: 751 YN---------LTKYTRSNQ---NTCINQMPCVSLG---------------------EPV 777 L + NQ NT M ++G P+ Sbjct: 667 SEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPM 726 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 +L + E+ GQN VA M ++GY+ ED++++++ V+ F + Sbjct: 727 VSTKIL---DLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGLFRVEVYKTTT 783 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + + G ++ PN E+ LDE G+ G V G + V K++P Sbjct: 784 TLLKKHSNGMSDVLW--PNPKESV---LDEDGLGKPGKMVRDGTVYVNKMSP 830 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 63/398 (15%), Positives = 126/398 (31%), Gaps = 100/398 (25%) Query: 32 LDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQ-------- 83 ++S+ F++ + + S L+Y+ R+ P + Sbjct: 24 IESYDYFVDHEIKALVRANQIVDS-----DIDHTFYLKYLDIRVAMPSVEENMVNYNVFP 78 Query: 84 -ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM--TDNGT----- 135 EC++R +TYSA + V + V + I +++V +G++P+M + Sbjct: 79 IECRLRDITYSANIYVDIEYVRNRQI--------IVKRDVCIGKMPVMLRSSRCHLRRET 130 Query: 136 ---------------------------FVINGTERVIVSQ--------LHRS--PGVFFD 158 F++ G ERV++ Q + S G+F Sbjct: 131 KGPMEGRKTKDRRIRESQECPLDVGGYFIVRGIERVVLIQEQLSKNRIIIESGPKGLFAS 190 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE 218 K R Y K+++F ++P I+++AL + Sbjct: 191 VTSSTDEHKSKTSVTTRDDCYY---------LKNSMFSE-----EVPVVIMMKALGLVQD 236 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 + + K FEI + E A I + K+ E R + L Sbjct: 237 REVAECVGKEYFEIMVPSFGECMSKGIFTREQALLYISSYIKLKPEDNR--IEEVLTVLS 294 Query: 279 KDDVKLIEVPVEYIAGKVV------------AKDYIDESTGELICAANMELSLDLLAKLS 326 + + +++ + K + + + E + + EL+ LL+ L Sbjct: 295 EKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILF 354 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + KR + + I + L AL Sbjct: 355 EDTFKRF------NFELKKSIDKILSKRSRAQEFDALT 386 >UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious spleen and kidney necrosis virus RepID=Q5YF54_ISKNV Length = 1053 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 132/603 (21%), Positives = 216/603 (35%), Gaps = 118/603 (19%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAV 475 +S + ++ L++ G V D D+L +R+ + G + N F+ + V+R + Sbjct: 290 MSGQHLGYMVATLLNAHV-VGAVHDKDNLRWKRVDTSGALILFLFRNLFKQWVCTVKRVM 348 Query: 476 KERLSLGDLDTLMPQDMINA--KPISAAVKEFFGSSQL------------------SQFM 515 ++ +G D +NA I+ + F + SQ M Sbjct: 349 EKSCVVGVPDLQGKSGSVNAITNVITNVLHLAFATGNWLVRKNSGTSKNTYTPRGVSQLM 408 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 N + I++ RR++ + + +VR +H +H G +CP ETPEG +G + L Sbjct: 409 CVQNYGARISNLRRMTH----AVGFKGKNIKVRQLHNSHNGYICPYETPEGDRVGNVVQL 464 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV---ED 632 ++ A VT V IH L + Q N + G V D Sbjct: 465 ALSAT-------------VTVPVCPRNIHTLMMSALRLFADPQGNQPVLLNGEIVAWVRD 511 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ------ 686 + C L+ V V G + H RA + ++ Sbjct: 512 RMLCGMAMMHVLWDYPHVTV-------VFRHGYGV-----HCVQRRAAVSCDLSLHRGQY 559 Query: 687 RQAVPTLRAD---KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 R P+L +P + ER V++DS G+V DA VI P Sbjct: 560 RMVCPSLVQGLLVRPF-PSPTERVVSMDSMRAEFMDLPGIVVLTDAMSAVIPFYNHTQSP 618 Query: 744 --------GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELA 795 G+ + + L +R + + P V P+ R + D S D + Sbjct: 619 RNAYQSNMGKQAVGLPCLNYMSRWDVTLDVLMYPQV----PLSRSKAM-DALSFD--TMP 671 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 G VA + ++GYN EDSI+++ VQ F + + L + K E +P Sbjct: 672 HGACPIVAVLTFDGYNQEDSIILNRSSVQRGMFVSTTYKTLCECEKHVKRCEFERIMCVP 731 Query: 856 ---NVGEAALSKLDESGIVYI----GAEVTGGDILVGKVT-----PKG---ETQLTPEEK 900 L + GI G VT G ++VGK++ P+G + P E+ Sbjct: 732 VDKRRPGLVYDYLGDDGIFDPALARGMFVTAGVVVVGKMSFDQSRPEGVCCSLAVKPHEE 791 Query: 901 LL---RAIF----GEKASDVKDSSLRVP------------NGVSGTVIDV--QVFTRDGV 939 + +F G K +K +R+P G G + D FT DGV Sbjct: 792 GYFDDKLVFNMADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCGMMYDQWDMPFTADGV 851 Query: 940 EKD 942 D Sbjct: 852 VPD 854 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 76/306 (24%), Positives = 116/306 (37%), Gaps = 67/306 (21%) Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 K VK+ L R + GDK A KG + DMP+ +G D+V+NP PS Sbjct: 805 GCKCVKIKLRKIRIPEMGDKFASFTAQKGTCGMMYDQWDMPFTADGVVPDLVINPHAFPS 864 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM + +L+ + A G Sbjct: 865 RMTVHYLLQMCFELGAVAGG---------------------------------------- 884 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 G F+ +K L +LG + +Y GRTG +FE V Sbjct: 885 -------------GKGYDATAFNSDGTDLLKTLEELG----YAKQVMYCGRTGRRFESLV 927 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 + KL HLV +K+HAR+TG +T+QP+ G+++ GG + GEME W ++GAA Sbjct: 928 FMAPCPYQKLKHLVANKVHARTTGPVDPLTRQPVAGRSRDGGIKIGEMEQWCKISHGAAA 987 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNI----------VDGNHQMEPGMPESFNVLLKEIRSLGI 1335 L E +T SD ++ MP + + +++ S+GI Sbjct: 988 ALHESMTTMSDPYTVPVCSVCHVMTDSYKVCRHCRSVSVQSYAMPYTSKLFFQQLASIGI 1047 Query: 1336 NIELED 1341 + D Sbjct: 1048 KTCIMD 1053 >UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9FCT0_ORYSJ Length = 1185 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 147/381 (38%), Gaps = 83/381 (21%) Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAP 1044 ++D L D +G + + + +++E + +K + +K +R ++ D+ Sbjct: 861 GRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDE--- 917 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 G V V L R GDK + HG KGV+ + E+ P+ G DIV+NP P Sbjct: 918 GKNFAV-VTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFP 976 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 +R GQ+LE LG Sbjct: 977 TRQTPGQLLEAALGKG-------------------------------------------- 992 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + L +R P T FD I + L G + +GRTGE+ Sbjct: 993 -----IALGGTMRYATPFTTASFD-----VITDQLHKAGFSRWGAESVLNGRTGERMHSL 1042 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + +G + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA Sbjct: 1043 IFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAA 1102 Query: 1285 YTLQEMLTVKSD----DVNGRTKM------------------YKNIVD-GNHQMEPGMPE 1321 L E L + SD V + Y + + +P Sbjct: 1103 ANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPY 1162 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 +L +E+ S+GI + E E Sbjct: 1163 GAKLLYQELFSMGICLRFETE 1183 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 63/360 (17%), Positives = 129/360 (35%), Gaps = 52/360 (14%) Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE--- 308 F I+ KV++ + ++ R +D + + I + + ID + E Sbjct: 257 YFLIKGMEKVFIAQEQKCLTRIW---VEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDAS 313 Query: 309 ---LICAANMELSLDLLAKLSQSGHKRIETLFT--NDLDHGPYISETLRVDPTNDRLSAL 363 +I + + ++ + G + +F N D + T+ T L Sbjct: 314 GGKIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTI--TATIKESDEL 371 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 E +R R+ + L +N F + + F Sbjct: 372 CEGFRKSD----KARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRN-------KAL 420 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL-- 481 + ++K L+ GK + D+ D N+R+ GE+ + R + ER + + L Sbjct: 421 FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDL 480 Query: 482 -GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHK 527 + + ++A I+ + F + + + NPL I+ Sbjct: 481 NSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDL 540 Query: 528 R----RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 R R++ G G + R +P+++G++C + TP+G N GL+ +L+V A + Sbjct: 541 RKTRQRVAYAGKAG--------DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSS 592 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 32/154 (20%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP----- 847 E GQN VA G+N EDS++++ ++ F T H + + K GP Sbjct: 786 EYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEV-ENKGGPGGNKR 844 Query: 848 ----EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 ++I + LD+ G+ Y+GA + GDI++GKV+ GE Sbjct: 845 LKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGE----------- 893 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 D S+++ + G V V + D Sbjct: 894 -----------DHSIKLKHTEKGMVQRVLLSAND 916 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 78/218 (35%) Query: 7 EKKRIRKDFGKRPQVLDVP-----------------YLLSIQLDSFQKFIEQDPEGQYGL 49 + K R + + P + +P L+S Q++S+ +F+ +GL Sbjct: 63 DGKGKRDSYAQIPVDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFV------SHGL 116 Query: 50 EAAFRS-----VFPIQSYSGN-------SELQYVSYRLGEP--------------VFDVQ 83 + F S V P S + +++ +L EP + Sbjct: 117 QELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPR 176 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGT---------VKDIKEQEVY--MGEIPLMT- 131 +++ +TYS+ ++V++ +Y E + ++I + Y +G +P+M Sbjct: 177 HARLQNMTYSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVM 236 Query: 132 -----------------DNGTFVINGTERVIVSQLHRS 152 G F+I G E+V ++Q + Sbjct: 237 SNLCWLHKLKESDCQFDSGGYFLIKGMEKVFIAQEQKC 274 >UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bilateria RepID=Q7Q416_ANOGA Length = 1089 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 79/302 (26%), Positives = 126/302 (41%), Gaps = 64/302 (21%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 +VK+ L RR + GDK + RHG KGV I ED+P+++ G D+V Sbjct: 838 LVKILLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDYGMSPDMV----------- 886 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 + H + +G + E Sbjct: 887 ----MNPHGFPSRMTVGKTL---------------------------------------E 903 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 ++ + +G F G+K +++++ L G+ Y G TGE E + G Sbjct: 904 LLGSKAGVLEGKFHYGTAFGGSKCSDLQDELFNHGFNYLGKDVFYSGITGEPLEVYIYSG 963 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 +Y KL H+V DKMHAR+ G +++T+QP G+++ GG R GEME L +YGA+ + Sbjct: 964 PVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIM 1023 Query: 1289 EMLTVKSD-------DVNGR---TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 E L + SD +V GR + N MP + +L +E+ S+ I Sbjct: 1024 ERLMISSDAFDVDVCNVCGRLAYSSWCHNCRSSASVSTISMPYACKLLFQELTSMNIVPR 1083 Query: 1339 LE 1340 L+ Sbjct: 1084 LK 1085 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 112/583 (19%), Positives = 209/583 (35%), Gaps = 92/583 (15%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV---------ERAV 475 + ++++++ + VDD D+ GN+R+ G + F R + Sbjct: 329 VALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKMIADKNIP 388 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALG 534 K + + D+ M + +I A +A G+ + +F M++ ++ ISALG Sbjct: 389 KIKAAQFDVGKHMREALITAGLETAIST---GNWTIKRFKMERAGVTQVLSRLSYISALG 445 Query: 535 PGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 +TR + FE R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 446 --MMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-VD 502 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 E P ++ ++I L N + + G+ + + R E R Sbjct: 503 EEPVIRLAYNAGVEDIRLLGGETINNPKV----FMVFINGNILGVTIAYRRLVEVFRMMR 558 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDA---NRALMGANMQRQAVPTLRADKPLVGTGM 704 + + S + H D R + R + + Sbjct: 559 RR-GLIGAFVSIHTSFTQRCV--YIHTDGGRLCRPYIIVQAGRPLYLDVNEENDSFIAYQ 615 Query: 705 ERAVAVDSGV-------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 ER + + T + G+V Y ++ + M G + Y Sbjct: 616 ERDIDPEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMG-----IIGYN 670 Query: 758 RSNQ-NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 + N+ +T + V P+ R + T+ +L GQN VA M ++GY+ ED++ Sbjct: 671 QKNRIDTLMYN--IVYPQSPMVRSRTI---ELTNFDKLPAGQNATVAVMSYSGYDIEDAL 725 Query: 817 LVSERVVQEDRFTTI-------HIQELACVSRDTKLGPEE--ITADIPNVGEAALSKLDE 867 ++++ + + I+ + + D +GP + +T I E LD Sbjct: 726 ILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDGVTGKIIAKHEC----LDT 781 Query: 868 SGIVYIGAEVTGGDILVGKVTP---------KGETQLTP-------------EEKLLRAI 905 GIV G +T +V K P + E+ P EE+ L I Sbjct: 782 DGIVSPGERLTCKQTMVNKEMPAVKSNNPIEQKESGQQPIAYSARVLVSTNNEEEFLVKI 841 Query: 906 FGEKASDV----KDSSLRVPNGVSGTVIDVQ--VFTRDGVEKD 942 + K SS GV+G +++ + F G+ D Sbjct: 842 LLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDYGMSPD 884 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 76/440 (17%), Positives = 142/440 (32%), Gaps = 81/440 (18%) Query: 32 LDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF----------D 81 +DSF FI D + +S L+Y++ +G+P Sbjct: 38 IDSFNYFINVDIKKIVQANQEVKS-----DADPCFYLKYLNVHVGKPDVEEGFNNTKSTT 92 Query: 82 VQECQIRGVTYSAPLRVKL-----------------RLVIYEREAPEGTVKDIKEQEVYM 124 EC++R +TYSAP+ V + R+ I R + Q + Sbjct: 93 PHECRLRDMTYSAPITVDIEYTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLSKV 152 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKG-----KTHSSGKVLYNARIIPY 179 E P M G F+I GTE+VI+ Q S D + SS + I+ Sbjct: 153 NECP-MDPGGYFIIRGTEKVILIQEQLSWNKMITEDYNGVIQCQVTSSTHEKKSRTIL-- 209 Query: 180 RGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 +++ + ++P IIL+A+ ++Q E + D + Q Sbjct: 210 --------LTKHGRYYLKHNSMTEEIPVAIILKAMGIASDQ------EIMQLVGIDPETQ 255 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 P L E A+ + + G ++ A+ + + +A ++A Sbjct: 256 KRFAPSLL--EAANHKVFTQQRALEYMGSKLIAKRFTTAATKYKTTADEARDLLATTILA 313 Query: 299 K------------DYIDESTGELICAANMELSLDLLAKLSQSGHKRIE-------TLFTN 339 Y+ ++ A EL + G+KR+E +F + Sbjct: 314 HVPVPSFNFQVKAIYVALMIRRVMAA---ELDRSAVDDRDYYGNKRLELAGSLLSLMFED 370 Query: 340 DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSA 399 + + + +A ++ + MR E E+ ++ R+ + Sbjct: 371 LFKRFNWELKMIADKNIPKIKAAQFDVGKHMR--EALITAGLETAISTGNWTIKRFKMER 428 Query: 400 VGRMKFNRSLLREEIEGSGI 419 G + L G Sbjct: 429 AGVTQVLSRLSYISALGMMT 448 >UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTL9_ENTBH Length = 1066 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 143/378 (37%), Gaps = 68/378 (17%) Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ----LAEQYDELKHEFEKKLEAKR 1033 + + + EK DK+ +E L + + +Y+ ++ +K+ + Sbjct: 740 ITMNEKIILEKNDKILYTPPIESKLKTNDIMLTYKSDGIIKTVRYENIEMGSVEKIRVFQ 799 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 +T+ +L V + R GDK RHG KG+ + + DMP+ ENG Sbjct: 800 NSLTEKSNL------TVIFTFRILRNPVVGDKFCSRHGQKGICAFLWNEIDMPFTENGLK 853 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 DI++NP PSRM IG ++E+ G AA G +N + + Sbjct: 854 PDIIINPHAFPSRMTIGMLIESMCGKAAVKFGKFVNGDPFIDNKNNDIN----------- 902 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + + LK G +Y Sbjct: 903 ------------------------------------VNKFNVNRKLKECGFNYYGNEPMY 926 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 G G + + + +G +Y +L H+V DK R G+ + TQQP+ G+ GG RFGEM Sbjct: 927 SGVFGTELKTDIFIGLVYYQRLKHMVSDKFQVRVGGAITSTTQQPVKGRKNKGGIRFGEM 986 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGR-TKMYKNI----------VDGNHQMEPGMPES 1322 E L A+G++ +++ L SD + KNI G MP Sbjct: 987 EKDTLIAHGSSALIKDRLLDCSDKTTFKYCYKCKNILFSSPNDKCKCGGIKSKNIKMPYV 1046 Query: 1323 FNVLLKEIRSLGINIELE 1340 F LL E+ + I +E + Sbjct: 1047 FKYLLAELMGMNIKLEFD 1064 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 131/883 (14%), Positives = 279/883 (31%), Gaps = 149/883 (16%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP--------- 78 L IQ F E++ ++ P+ + G + + + +P Sbjct: 9 LHIQQ--FNALFEKNI-----IKNVVYKTKPLI-FKG-FVMNFEKIEIHKPYVLKQDVDN 59 Query: 79 VFDVQECQIRGVTYSAPLRVKLRL-----VIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 EC+ G TYS + VK++L +++ G + + + M + +MTD Sbjct: 60 RLLPHECRETGRTYSGNIFVKIKLMYKNEILFHDYRGAGQLPIMVKSN--MCHLSMMTDQ 117 Query: 134 -------------GTFVINGTERVIVSQL--HRS--PGVFFDSDKGKTHSSGKVLYNARI 176 G F+ING +R+I + R+ G++ K +S Y+ I Sbjct: 118 ELLAVKEDPNEHGGFFIINGYDRIIRFHIAHKRNWVFGIY-----SKPKNSIFSGYSCSI 172 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 R S D E K+ + +D I L+ F+ K Sbjct: 173 ---R-SVCDDEIGQKNEIVHTVD------GNIFLKCF----------FYHK--------G 204 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + ++ + + ++ + ++ R +E + Sbjct: 205 YLIPIIYILRALQNTT----------DKEIYTLLNQNPRAIEFLTKSNQPYYNKDECLNY 254 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 + + + A EL +L LS + L + I ++ + Sbjct: 255 LGSRFKHIFRIDNYKEAGEELLNRILIHLSSH-IDKFNLLIYSINKLFKLIDGKIKSEDI 313 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN-RSLLREEIE 415 + + + + P E+L + + + K ++ R+ Sbjct: 314 DLSSNHELYTEAQLIPLCIK---------EHLEEFKKLFKTRIIKLFKREVKNQYRDNET 364 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + I ++ D I + +I N E D ++ ++F + + + Sbjct: 365 DTEITTQIDDIMSTNRSTNI-NDTVEFD--------------KLFSDEF------MIKKI 403 Query: 476 KERLSLGDLD--TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 E DLD T + + + + + +S + + N +H +S Sbjct: 404 VELFKKTDLDIGTKIHKFLSTGNITTYNCSDLLQTSGFTFLSGRINYWEFASHFYSVS-- 461 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT--NEYGFLETPY 591 G VR + P +G CPI TP+G GL+ L+ + ++Y F Sbjct: 462 -RGAFFSNLKITSVRKLQPESFGFFCPINTPDGSLCGLLTYLTQQCEITCSKYIFDTNIL 520 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 ++ + + + G ++ + + + K E D++D Sbjct: 521 YQLGVSFINLNNNMIPVFYNGK-IMGYTSYPIKLIEDLRNYRCKNKLKIEIVYEFGDKID 579 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 + +S +S+ + +++ +G Q L T + + ++ Sbjct: 580 EI-ISICDDISLLIRKVWNKKNN--MEEYIGIKEQVFLDIELGTVH---NTFNYKEIDIN 633 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ--NTCINQMP 769 + + +A + + D + + + +M GI YN+ KY N+ N Q P Sbjct: 634 NMFSIIANT---IPFADHNPSPRNIYQCQMAKQAMGIAAYNI-KYRVDNKLYNINYLQHP 689 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 + + LG N VA + + GY+ ED+I++++ V F Sbjct: 690 LIQTSNYQC------------FEKFPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGMFN 737 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 + + + GI+ Sbjct: 738 GFITMNEKIILEKNDKILYTPPIESKLKTNDIMLTYKSDGIIK 780 >UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 Tax=Intramacronucleata RepID=RPA2_EUPOC Length = 1166 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 98/513 (19%), Positives = 174/513 (33%), Gaps = 111/513 (21%) Query: 888 TPKGETQLTPEEKLLRAIFGE----KASDVKDSSLR-VPNGVSGTVI----------DVQ 932 TP Q + K+ R +F K D + P+G + V D Sbjct: 699 TPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAM 758 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + + E+ + + + S+ + +++ + + + KL+ + Sbjct: 759 IINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENI 818 Query: 993 PRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 D ++G LT + + + ++ +L + + G+D + Sbjct: 819 DPDGLPKIGSQLTKGKPELCIFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSI 878 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 + R GDK + RHG KGV+S + P DMP+ ENG D+++NP PSRM +G Sbjct: 879 GYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMG 938 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 ++++ + G+ Q+ + Sbjct: 939 MLIQSMAAKSGSLRGEFKTVETFQRYD--------------------------------- 965 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 D + L G +Y G G + + +G + Sbjct: 966 -----------------DNDIVGHFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVV 1008 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y +L H+V DK AR TG ++T QP+ G+ + GG RFGEME +L A+GAAY L + Sbjct: 1009 YYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDR 1068 Query: 1291 LTVKSDDVNGRTK--------------------------------------------MYK 1306 L SD G + K Sbjct: 1069 LFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDESNKDTEDKEIHMNEKVICK 1128 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 ++ + +P L E+ S+GI ++ Sbjct: 1129 VCKKNSNCKKVALPFVLRFLANELASMGIKLKF 1161 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 142/859 (16%), Positives = 294/859 (34%), Gaps = 154/859 (17%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYT--TEQILDLFFEKVIFEIRDNKLQ---- 238 + ++D L+ R+RK+ TI L A + ++++D F K+ + + Sbjct: 77 EIDYDS-HILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNL 135 Query: 239 MELVPERL--RGETA-----SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 L + L RGE F + N KV I ++ + +Y Sbjct: 136 KGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDY 195 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 +D T L ++ +SL L+ + + I L I E + Sbjct: 196 GVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYERI 255 Query: 352 RVDPTN-----DRLSALVEIYRMMRPGEPPTREAAESLFENLF-----------FSEDRY 395 N DR+ A++ + + + + +++L + F D Sbjct: 256 VKGNFNQRQISDRVEAILAVGKDL---NIYDSDQSKALIGSRFRIVLAGITSETSDIDAG 312 Query: 396 DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRS 455 DL + + + + +I ++ KL + E+D++D + + + Sbjct: 313 DLFLSKHICIHTDSYEAKFDT--------LILMIDKLYASVANEVELDNLDSVAMQDVLL 364 Query: 456 VGEMA-----ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAV-------K 503 G + E F + + + + L + D + +D++ + I+ + + Sbjct: 365 GGHLYLQILSEKLFDCLHINLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIGKRME 424 Query: 504 EFFGSSQLSQ--------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 F + L D+ N + ++H R ++ G E+ VR Sbjct: 425 NFLATGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFR---SIHRGQYFAEQKTTSVRK 481 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQ---TNEYGFLETPYRKVTDGVVTDEIHY- 605 + P +G +CP+ TP+G GL+N +S+ + E +R + + + I Sbjct: 482 LLPESWGFICPVHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNSISSD 541 Query: 606 --LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG-ESSLFSRDQVDY-----MDVST 657 L+ G Y + +L G+ +D+ +G ++ Q DY ++++ Sbjct: 542 LCLNYHT-GYYPVIFDGIHL---GYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAF 597 Query: 658 QQVVSVGASLI---PFLEHDDAN--RALMG---------ANMQRQAVPTLRADKPLVGTG 703 +L FL A R + + +++ + D+ + Sbjct: 598 IPFSGYSRNLQWPGIFLASTPARFTRPVKNLHYNCIEWISPLEQMNLSIACTDEDITPET 657 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ-- 761 + + + ++ VA G +Y ++ + + +M G Y+ ++ N+ Sbjct: 658 THQELDPINILSIVASVGVFAEY---NQSPRNMYQCQMAKQTMGTP-YHNHQFRTDNKIY 713 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 P V V D+ E G N VA + + GY+ ED++++++ Sbjct: 714 RLLFPHRPIVKTRTQV----------DFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKS 763 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIP---------NVGEA-----ALSKLDE 867 + + + D + T I NV + L +D Sbjct: 764 SYERGFGHGVVYKSYT---HDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDP 820 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 G+ IG+++T KG+ +L + L R G K S KDS Sbjct: 821 DGLPKIGSQLT-----------KGKPELCIFDTLKR---GAKLSKFKDS-------EKAR 859 Query: 928 VIDVQVFTRDGVEKDKRAL 946 + V+V D D ++ Sbjct: 860 IETVRVCGNDDKNPDNLSI 878 >UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=A0BY74_PARTE Length = 1115 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 90/441 (20%), Positives = 155/441 (35%), Gaps = 91/441 (20%) Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG---LFSRIRAVLVAGGVEA 986 D + + E+ I + D + ++L L+++I++ + + Sbjct: 731 DAMILCKSSYERGFGHGIIYKSSEYSLNDDKEVKYKLLSQIPVQLYNQIKSQIPVNLLPY 790 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 ++ L + Q Q ++ D E+ + + +D++ Sbjct: 791 GLPEQSQVVTKGTAVLALYDSQLQQVKVHHSKDSETARIEQVAVVNKSE----NDVS--- 843 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 V + + R GDK + RHG KGV+S + P DMP+ E+G DI++NP PSR Sbjct: 844 ---VMIKYRINRNPIIGDKFSSRHGQKGVMSLLWPQIDMPFSESGMVPDIIINPHAFPSR 900 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IG ++E+ A N + + E + + Sbjct: 901 MTIGMLIESMAAKA--------NVLQGEMFETHPFQNYE--------------------- 931 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + + L G LY G G + + Sbjct: 932 ---------------------NDNVVDYFGKQLIKHGYNYHGNETLYSGIYGTPLKVDIY 970 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G +Y +L H+V DK ARS G ++TQQP+ G+ + GG R GEME AL A+G AY Sbjct: 971 FGVVYYQRLRHMVSDKSQARSMGPVDVLTQQPIKGRKKGGGIRLGEMERDALIAHGVAYC 1030 Query: 1287 LQEMLTVKSD-------DVNGR---------------------TKMYKNIVDGNHQMEPG 1318 + + L SD D G + Y + Sbjct: 1031 INDRLLKCSDYSETYICDKCGNMLATYQFVQLLSLENIQSVQSSHPYCVRCKQAKCSKVA 1090 Query: 1319 MPESFNVLLKEIRSLGINIEL 1339 +P L+ E+ ++ + +E Sbjct: 1091 IPFVLRYLVNELAAMNVKLEF 1111 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 88/537 (16%), Positives = 182/537 (33%), Gaps = 73/537 (13%) Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 N + AL I R++R E F+ + DL VGR+ + Sbjct: 273 GINTQKDALEYIGRLLR-------------VELNIFNPETTDLQ-VGRIFLREHICVHLD 318 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 ++ ++KL + + D++D L N+ + G + R L + Sbjct: 319 NDQD--KASILLLCIEKLYALFIDEINPDNLDSLVNQEVLLSGHLYTAYLREKLEDLLVG 376 Query: 475 VKER-LSLGDLDTLMPQDMINAK-------PISAAVKEFFGSSQL-SQ------------ 513 V+E+ L + +D+ K + ++ F + L SQ Sbjct: 377 VREKILKDATKEQSKLKDLAYFKRCFDLQTTVGEKLENFLATGNLRSQTGLDLMEASGFT 436 Query: 514 -FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 D+ N + ++H R ++ G + VR + P +G VCP+ TP+G GL+ Sbjct: 437 IIADKLNNMRFLSHFR---SVHRGSYFAQMKTTTVRKLLPDVWGFVCPVHTPDGGPCGLL 493 Query: 573 NSLSV----YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYVIAQANSNLDE 625 N +++ +E E + GV + + Y +I NS+L Sbjct: 494 NHITMSCVPLTHPDEQDIEELLF---PLGVQSQRLIYSKNDLPVVLNGKLIGYLNSSLLP 550 Query: 626 EGHFVEDLVTCRSKGESSLFS-----RDQVDYMDVST-QQVVSVGASLIPFLEHDDANRA 679 F + +S G + Q + + + + A L+ + + N Sbjct: 551 --TFEHTIRVYKSNGTIKETTEVACLPRQENKSPLFPGIYINTTVARLMRPVINLKLNTI 608 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 + +++ + + + + ++ +A V +++ ++ + + Sbjct: 609 EWISPLEQINMSIACTQADIRTDTQYQEIDPAYILSILASN---VPFLNYNQSPRNMYQC 665 Query: 740 EMYPGEAGIDIYNLTK-YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 +M G +N + Q P V D + A G Sbjct: 666 QMAKQTMGSPCHNYPYRFDNKMYRILFPQKPVV----RCFGYD------DYQFADYASGT 715 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 N VA + + GY+ ED++++ + + I + D K ++ + IP Sbjct: 716 NAIVAVISYTGYDMEDAMILCKSSYERGFGHGIIYKSSEYSLNDDKEVKYKLLSQIP 772 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 69/468 (14%), Positives = 151/468 (32%), Gaps = 103/468 (22%) Query: 32 LDSFQKFIEQDPEGQYGLEAAFRSVFPIQS----------YSGNSELQYVSYRLGEP--- 78 ++SF +GL R + PI+ N ++ ++G P Sbjct: 17 IESFNYL------YTHGLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMPTQQ 70 Query: 79 ------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM-- 130 +C+ +Y+AP+ + I + + +GEIP++ Sbjct: 71 GMLGDNRVLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLS--------LGEIPILVK 122 Query: 131 TDNGT----------------------FVINGTERVIVSQLH--RSPGVFFDSDKGKTHS 166 + F+ING E++I + R+ + F K Sbjct: 123 SQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKNKG 182 Query: 167 SGKVLYNARIIPYRGSW----LDFEFDPKDNLFVRIDRRRK---LPATIILRALN-YTTE 218 Y ++ R + + N+++RI ++K +P I+LRAL Sbjct: 183 FNFSPYAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDMNDY 242 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR--- 275 QI +++++ D + R E D ++ G + R +R Sbjct: 243 QI----YQQIVRSQADKSDISD------RVEVMIADAKSRGINTQKDALEYIGRLLRVEL 292 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI-- 333 + + ++V ++ + D+ ++ +L + +++ + Sbjct: 293 NIFNPETTDLQVGRIFLREHICVHLDNDQDKASILLLCIEKLYALFIDEINPDNLDSLVN 352 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 + + + + Y+ E L R L + + +S ++L + + Sbjct: 353 QEVLLSGHLYTAYLREKLEDLLVGVREKILKDATKE------------QSKLKDLAYFKR 400 Query: 394 RYDLSAVGRMKFNRSL---------LREEIEGSGILSKDDIIDVMKKL 432 +DL K L + +E SG D ++ M+ L Sbjct: 401 CFDLQTTVGEKLENFLATGNLRSQTGLDLMEASGFTIIADKLNNMRFL 448 >UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=Neoasaia chiangmaiensis RepID=D1GLP0_9PROT Length = 287 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 132/290 (45%), Positives = 170/290 (58%), Gaps = 31/290 (10%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 TERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++VRIDR Sbjct: 1 TERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAARVIPYRGSWLDFEFDAKDLIYVRIDR 60 Query: 201 RRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDN 235 +RKLP T +L AL ++IL F+ +V F Sbjct: 61 KRKLPVTTLLYALEGENSIAARAAKAEEGGDVDAMPIRGMDQDEILGYFYNEVPFTRMPK 120 Query: 236 KLQMELVPERLRGET---ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 PE RG +D + G+V E ++TAR +R++ ++ +++ V + Sbjct: 121 GWARPFDPEAFRGLKLLEPLYDAD-TGEVVAEADAKLTARAVRKIAEN-TRVVLVGRADL 178 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ VA D ++E TGE+ A EL+ LA L +G + L + HGP+I TL Sbjct: 179 LGRFVAHDLVNEHTGEIYAEAGEELTEARLAALEDAGVTELPMLSVDG-QHGPWIRNTLA 237 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 VD R ALV+IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR Sbjct: 238 VDKNMSRDDALVDIYRIMRPGEPPTPETAEAMFRGLFFDPDRYDLSAVGR 287 >UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophyta RepID=A3BQ32_ORYSJ Length = 1257 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 104/454 (22%), Positives = 169/454 (37%), Gaps = 91/454 (20%) Query: 922 NGVSGTV-IDV-QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 NG + V I V Q F ++ RA M Q K ++ E + + + Sbjct: 860 NGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHKENI 919 Query: 980 VAGGVEAEK--LDKLPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRK 1035 G ++K +D L D +G + + + ++++ + +K +K ++ Sbjct: 920 NFGKTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVV 979 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 ++ DD V L R + GDK A HG KGVI ++ E+ P+ G D Sbjct: 980 LSATDDGTNSAF----VTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPD 1035 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 IV+NP G P+R GQ+L Sbjct: 1036 IVINPHGFPTRQTPGQLL------------------------------------------ 1053 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 E + L ATP F I E L G + +G Sbjct: 1054 -----------EAALGKGIALGGATRYATP-FTSPSVEVITEQLHKAGFSRWGGESVING 1101 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 RTGE+ PV G + +L+H+ +DK+ R+TG +T+QP+ + ++GG +FGEME Sbjct: 1102 RTGERAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEMER 1161 Query: 1276 WALEAYGAAYTLQEMLTVKSD----DVNGRTK-----------------------MYKNI 1308 L A+GAA L E L + SD V R + + Sbjct: 1162 DCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRFC 1221 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P +L +E+ S+GI ++ + E Sbjct: 1222 RSAEEVVRVSVPYGAKILYQELFSMGICLKFDTE 1255 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 110/655 (16%), Positives = 222/655 (33%), Gaps = 131/655 (20%) Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 + + A I +++R + P + + + F D+S NRS Sbjct: 395 QCEGFQREGRASEYIDKLIRNTKFPPKGSFDEYIGRHMFP----DVSG------NRS--- 441 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL--- 468 + +++ L+ +G + D+ D N+R+ E+ + + V + Sbjct: 442 ---------KALFLGYMVRCLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHA 492 Query: 469 -VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------F 514 R+ + ++ LS GD D + ++A ++ + F + Sbjct: 493 QKRMVKVMQRHLS-GDGDLQPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIVAT 551 Query: 515 MDQNNPLSEITHKRR----ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 + + NPL ++ R+ ++ G G + R +P+++G++C + TP+G G Sbjct: 552 LRRTNPLQMMSDMRKTRQWVAYAGKAG--------DARYPNPSYWGKLCFLSTPDGEKCG 603 Query: 571 LINSLSVYAQTN------EYGFLETPYRKVTDGVVTDEIHYLS-AIEEGNYVIAQANSNL 623 + +L++ A + L + K D ++ EI GN V A+S Sbjct: 604 FVKNLAITAIVSCLAREPSVDALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSV- 662 Query: 624 DEEGHFVEDLVTCRSKGES---SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 FV L + R + + RD+ + ++ S ++ L + R + Sbjct: 663 ----EFVLHLRSMRRRKQIDAQVEIKRDKQNK----EVRIFSDPGRILRPLLIVENLRNI 714 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG------------------ 722 M + L + G+E + G Sbjct: 715 MNRKNGSYSFQELMDQNIIELIGVEEEEDIRCAYGIRHLFAGDEEKNFSFYTHCELDPSF 774 Query: 723 -------VVQYV--DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS- 772 ++ + D ++ ++ E L + + Q P Sbjct: 775 LLGLSCSIIPFANHDTAKRILMQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRPLFKT 834 Query: 773 -LGEPVERGDVLADGP--STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 + + + D G E GQN V+ G+N EDS++++ ++ F Sbjct: 835 VAADCLGKRD-YTSGSKHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFR 893 Query: 830 TIHIQELACVSRDTKLG-----PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 T H + + + ++ E I + + LD G+ YIGA + DI++ Sbjct: 894 TQHFKSYKALIENKEITKRLKHKENINFGKTPSKKGLVDSLDIDGLPYIGASLQSNDIII 953 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV-FTRDG 938 GKV+ GE D S+++ + G V V + T DG Sbjct: 954 GKVSDSGE----------------------DHSIKLLHTEKGIVEKVVLSATDDG 986 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 48/168 (28%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRS-----VFPIQSYSGNS------ELQYVSYRL 75 L+S Q++S+ F+ +GL+ F S V P S +++ L Sbjct: 140 LVSHQINSYNDFV------SHGLQKMFDSLDEVTVEPDYDPSKKVGPWRHATIKFGRVEL 193 Query: 76 GEP--------------VFDVQECQIRGVTYSAPLRVKLRLVIYE-REAPEGTVKD---- 116 EP + +++ +TYS+ ++V++ + +Y ++ + + Sbjct: 194 EEPVFWVDNCDLDVETLKLKPKHARLQKMTYSSKMKVEMTVQVYSLHKSDKAKTGEDPYI 253 Query: 117 -----IKE-QEVYMGEIPLMTDNG------TFVINGTERVIVSQLHRS 152 +KE + V +G++P+M F+I G E+V V++ R Sbjct: 254 QRKDIMKETKWVTIGKLPVMESECEYDFGGYFLIKGMEKVFVAEEQRC 301 >UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S5S8_TRIAD Length = 1016 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 79/297 (26%), Positives = 118/297 (39%), Gaps = 70/297 (23%) Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 ++K L RR + GDK + RHG KGV I EDMP+ D ++NP Sbjct: 769 LIKTLLRSSRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFT------DQIMNPH------- 815 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 G ++ K+ E Sbjct: 816 ---------GFPSRMTVGKLM--------------------------------------E 828 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 V+ +L G FDG K ++ + L + +G+ L G TGE + G Sbjct: 829 VIGGKASLLDGKFRYGTAFDGDKLEDLCQTLIDYNYSYAGKDYLTSGITGEGLSAYIFFG 888 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 +Y +L H+V DKMHAR+ G +++T+QP G+++ GG R GEME L AYG + L Sbjct: 889 PVYYQRLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSMLLV 948 Query: 1289 EMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 E L + SD DV K H +P + +L +E++S+ I Sbjct: 949 ERLMISSDAFEVDVCNNCGLLAYSKWCHYCHSSCHVSSLQIPYACKLLFQELQSMNI 1005 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 106/572 (18%), Positives = 196/572 (34%), Gaps = 116/572 (20%) Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 L LS +G R +++ + D++ + + + +DD D+ Sbjct: 196 LEVDNKGNALSYIGSRVRQRKWGAKKL---PVDEARDLLANVV----LSHIPSILDDKDY 248 Query: 448 LGNRRIRSVGEMAENQFRVGLVRV--------ERAVKE----------RLSLGDLDTLMP 489 GN+R+ G++ F + E+ + + R D+ M Sbjct: 249 YGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMNLRFLEFDIVKYMR 308 Query: 490 QDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE-- 546 QD I A G+ + ++ MD+ ++ +SALG +TR + FE Sbjct: 309 QDQITNGFNLALTT---GNWSIKRYKMDRAGVTQVLSRLSYLSALG--MMTRISSQFEKT 363 Query: 547 -----VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 R + P+ +G +CP +TPEG GL+ +L++ + + + + Sbjct: 364 RKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSD-DKIIINLLFNLGVE 422 Query: 602 EIHYLSAIE--EGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 +I+ LS E + I N + + R QV + Sbjct: 423 DINLLSGEELSLPHIYIVYVNGYVLGAARNYKKLIRTFRLLRRD-----IKTAQVKRILY 477 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 ++ S+ P + N AL G + R ++++KPLV ++ Sbjct: 478 LIANYINEFVSIYPNHTYRQINIALDGGRVCR-PYIIVKSEKPLVTIKHIEELSQGIRSF 536 Query: 716 AVAKRGGVVQYVDASR---IVIKVNEDEMYPGEAGIDIYN---------LTKYTRSNQ-- 761 R G+++Y+D + I + E ++ +DI L + NQ Sbjct: 537 DDFIRNGLIEYLDVNEENDCNIALYESDINSKTTHLDIEPFTILGVCAGLIPFPHHNQSP 596 Query: 762 -NTC-------------INQM--------PCVSLGEPVERGDVLADGPSTDLGELALGQN 799 NT NQ V P+ + + + +L GQN Sbjct: 597 RNTYQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVKTKTI---DLIEFDKLPAGQN 653 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 +A M ++GY+ ED++++++ V GP+ G+ Sbjct: 654 AIIAVMSYSGYDIEDAVILNKASVDR--------------------GPQADA----QTGK 689 Query: 860 AALSK--LDESGIVYIGAEVTGGDILVGKVTP 889 LD GI G +V IL+ K P Sbjct: 690 TIWKHKVLDADGICMPGEKVESKQILINKSIP 721 Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 126/767 (16%), Positives = 237/767 (30%), Gaps = 197/767 (25%) Query: 6 TEKKRIRKDFGKRPQVLDV-PYLLSIQ------LDSFQKFIEQDPEGQYGLEAAFRSVFP 58 T++K + K + P L ++ +DS+ FI ++ + Sbjct: 16 TKEKNLTAPVNKLEDKWKLVPAFLKVKGLVKQHIDSYNYFI------NCEIKKIVNANNK 69 Query: 59 IQ-SYSGNSELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYER 107 + L+Y++ +G P + EC++R +TYSAP+ V + Sbjct: 70 VTTDADTVFYLKYLNVYVGNPDIEESFNVTKPTYPHECRLRDLTYSAPIVVDI------- 122 Query: 108 EAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGK 163 + I+ Q++ +G +P+M + V+NG V +++ + P G F K Sbjct: 123 -EYTRGAQRIRRQKLPIGRVPVMLRSSICVLNGKSPVELAKYNECPIDPGGYFIVKGVEK 181 Query: 164 THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR--------RKLPATIILRALNY 215 + L R+I E D K N I R +KLP Sbjct: 182 VILIQEQLSKNRMI--------LEVDNKGNALSYIGSRVRQRKWGAKKLPVD-------- 225 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 +L I I D+K L G+ + + E + ++ Sbjct: 226 EARDLLANVVLSHIPSILDDKDYYGNKRLELAGQLLA--------LLFEDLFKKFNSELK 277 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYI-----DESTGELICAANMELSLDLLAKLSQSGH 330 + + ++ + + + D + D+ T A K+ ++G Sbjct: 278 SIAEKNIPKQRAGPVNMNLRFLEFDIVKYMRQDQITNGFNLALTTGNWSIKRYKMDRAGV 337 Query: 331 KRI--ETLFTNDLDHGPYISETLRVD-PTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 ++ + + L IS + S + M+ P + P E A L +N Sbjct: 338 TQVLSRLSYLSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE-ACGLVKN 396 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 L + I + D ++ L ++ V+DI+ Sbjct: 397 L-------------------------ALMTHITTDSDDKIIINLLFNL-----GVEDINL 426 Query: 448 LGNRRIRSVGEMAENQFRVGL-----VRVERAVKE-RLSLGDLDTLMPQDMINAKPISAA 501 L + + G ++ ++ RL D+ T + ++ I+ Sbjct: 427 LSGEELSL--PHIYIVYVNGYVLGAARNYKKLIRTFRLLRRDIKTAQVKRILY--LIANY 482 Query: 502 VKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC-P 560 + EF +S + + R+I+ G GRVC P Sbjct: 483 INEF-----VSIYPNHT--------YRQINIALDG-------------------GRVCRP 510 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN 620 ++ S L R D + I YL EE + IA Sbjct: 511 YI--------IVKSEKPLVTIKHIEELSQGIRSFDDFIRNGLIEYLDVNEENDCNIALYE 562 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 S+++ + ++D+ ++ V A LIPF H+ + R Sbjct: 563 SDIN-----------------------SKTTHLDIEPFTILGVCAGLIPFPHHNQSPRNT 599 Query: 681 MGANMQRQAV----------------PTLRADKPLVGTGMERAVAVD 711 M +QA+ + PLV T + D Sbjct: 600 YQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVKTKTIDLIEFD 646 >UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular organisms RepID=B2X2B9_CHLMO Length = 1661 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 92/208 (44%), Positives = 130/208 (62%) Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 ++I + + Y+L KY RSNQ+TC+ P V G+ VE GD+LAD ++ Sbjct: 242 TKIKVNSYKIIENCDNYLSMEYSLEKYHRSNQDTCLVHKPAVVEGQWVESGDLLADCSAS 301 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 GELALGQN+ + +MPW GYNFED+IL+SER+V +D +T+IHI+ ++KLG ++ Sbjct: 302 VGGELALGQNILIGYMPWEGYNFEDAILISERLVYDDLYTSIHIERYEVNIEESKLGMDK 361 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 IT +IP V +L L+ GI+ IG+ V GDILVGKVTP + + +KLL I + Sbjct: 362 ITREIPEVDSDSLKNLNSLGIIKIGSWVQEGDILVGKVTPVNKKNQSNYQKLLYLILDKT 421 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 S V+DSSLR P G+ VI +QVF + Sbjct: 422 VSPVRDSSLRAPKGIKAKVIGLQVFKNN 449 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 40/213 (18%) Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 + + ++VYLA +RR+Q GDKMAGRHGNKG+IS+I PIED+P+ +GTP+D+VLNPLG Sbjct: 705 STSSVSSIQVYLAERRRVQVGDKMAGRHGNKGIISEILPIEDLPFLPDGTPLDMVLNPLG 764 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 VPSRMN+GQI E LG+A K +G+ + GA+ + S Sbjct: 765 VPSRMNVGQIYECLLGLAGKHLGENYKVFPFDEI--------------YGAEASRSFVYS 810 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + A K L +LP G+I LYDGRTGE F Sbjct: 811 KLYN-----------------------ASVKTGKTWLFNPNLP--GKIGLYDGRTGESFH 845 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 + +TVGY Y+L+L H+VDDKMH T + ++T Sbjct: 846 QAITVGYAYILRLVHMVDDKMHCL-TPDHDVLT 877 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 56/95 (58%), Positives = 76/95 (80%), Gaps = 1/95 (1%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 +RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLT+KSDD++GR + Sbjct: 1563 SRSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGYGAAFTLLEMLTIKSDDMSGRMTL 1622 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + N++ N ++ G PESF VL+ E+++L ++I L Sbjct: 1623 WSNLIL-NKEISIGTPESFKVLICELQALCLDIGL 1656 >UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Isoetes sp. JL-2005 RepID=Q1L6W4_9TRAC Length = 623 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 85/404 (21%), Positives = 145/404 (35%), Gaps = 91/404 (22%) Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 +D ++ E + + L++ + A L + V KL Sbjct: 295 KDALKPTLDQRFGEPSESDVGGYKKQSHYEKLDSDGLPHVGAALSSSDVIIGKL------ 348 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 T +++ + + ++ + A + VKV L Sbjct: 349 ------FTAGADVREVDASQKLKHTERGRVDQVVIAAKNDAETD----------VKVRLR 392 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 R Q GDK + HG KGV+ ED+P+ +G D+++NP P+R +GQ++E Sbjct: 393 ECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPDLIINPHAFPTRQTLGQLMEC 452 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 G AA A ++ D + F + + R +E Sbjct: 453 LAGKAA-------------------------------AVSAREQDATPFVERSLPRFSEE 481 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 L +G +Y GR G + + V +G + +L Sbjct: 482 -----------------------LHKAGFQRTGMECMYSGRVGTRMKVRVNIGVTFYQRL 518 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+ +DKM R TGS +T+QP+ + + GG RFGEME + A+GA+ TLQE L + S Sbjct: 519 THMAEDKMKYRRTGSVHPLTRQPIVDRKRHGGIRFGEMERDCMIAHGASATLQERLFLLS 578 Query: 1296 DDVNGRTKM---------------YKNIVDGNHQMEPGMPESFN 1324 D + G++ + +P + N Sbjct: 579 DPYVMYICTKCRRTASVEQNKVPRCRFCKCGSNIVRVNVPYACN 622 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 83/443 (18%), Positives = 146/443 (32%), Gaps = 107/443 (24%) Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS- 621 TP+G N GL+ S++V+A LETP + + D ++ + + G V N Sbjct: 2 TPDGENCGLVKSMAVFAIVT----LETPEQPILDALLGHMMPPEAVFPLGELVKVFLNGK 57 Query: 622 ---NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST----QQVVSVGASLIPFLEHD 674 D E + + R G DY + + S Sbjct: 58 WVGITDAENDLEQYVKRKRRGGGL--------DYQAICLRGKEINIFS------------ 97 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGM-ERAVAVDSGVTAVAKRGGVVQYVDASRI- 732 DA R L R + + + E + GV+++V A Sbjct: 98 DAGRLL------RPLFIVDNDELCITKEHLFELRRKKPQDGFEYLVKEGVIEFVGAEEEY 151 Query: 733 -----------------VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT------------ 763 ++ E+ P + + NQ++ Sbjct: 152 RASIAGSIQDLKRPRSHHVRYTHMELRPASLLAIGAFVIPFVNHNQSSRVMQQSRKHCRQ 211 Query: 764 -----CINQM--------PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 C N + P+ R + EL GQN VA + GY Sbjct: 212 AIGFNCSNLRVRCDTTSHELLYPQRPLVRTQAMT---LIGRPELHNGQNPIVAVLSDTGY 268 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSR---DTKLGPEEITADIPN-VGEAALSKLD 866 N EDSI++++ + F ++H + D + G E +D+ ++ KLD Sbjct: 269 NQEDSIILNQSSLDRGMFRSMHFHTHKDALKPTLDQRFG-EPSESDVGGYKKQSHYEKLD 327 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 G+ ++GA ++ D+++GK L A G +V D+S ++ + G Sbjct: 328 SDGLPHVGAALSSSDVIIGK--------------LFTA--GADVREV-DASQKLKHTERG 370 Query: 927 TVIDVQVFTRDGVEKDKRALEIE 949 V V + ++ E D + E Sbjct: 371 RVDQVVIAAKNDAETDVKVRLRE 393 >UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia intestinalis RepID=A8B9W7_GIALA Length = 1293 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 145/403 (35%), Gaps = 78/403 (19%) Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 LEA R+ + + + K+ R T + + L+ E+ + Sbjct: 940 LEADGLPRVGNAVNSQRLIIGKIRPNKRSMNSRAVSTYDFQDVSLKVKMEETGRVDSVII 999 Query: 1027 KKLEAKRRKITQGDDLAPGVLK---IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 ++ +++G D + + KV + R Q GDK + RHG KG + + E Sbjct: 1000 APDLREQSFLSEGVDSNTTGAEGSLLAKVRVRSSRVPQLGDKFSSRHGQKGTVGMLLRHE 1059 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 D+P+ +G DI++NP +PSRM IGQ++E+ G +++ Sbjct: 1060 DLPFTLDGITPDIIMNPHAIPSRMTIGQLMESVASKLGALSGHEVDGTAFNAPP------ 1113 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 G+ + +I L Sbjct: 1114 ---------------------------------------------GSTDKQIAADLHARG 1128 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 + +G TGE + +G + +L H+V DK+ +R+TG +T+QP G++ Sbjct: 1129 YQKHNYEAMMNGMTGEMMTYRIFIGPTFYQRLKHMVLDKISSRNTGPIVTLTRQPNEGRS 1188 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------------------------DVN 1299 +GG R GEME A A+GA L++ L SD + Sbjct: 1189 NYGGMRIGEMEKDAFIAHGATAILRDRLLFSSDVSEFLVCQNCGIICWHADSRKLTTKKS 1248 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P + + +EI +G+ +E E Sbjct: 1249 PHCMICSESSTTDSFARITIPYAAKLFFQEIIGMGVFPRIEVE 1291 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 119/732 (16%), Positives = 238/732 (32%), Gaps = 190/732 (25%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG------NSELQYVSYRLGE-PV 79 L ++Q+DS+ F++ ++ S PIQ N L + +L Sbjct: 26 LAAMQIDSYNHFVKHT------MKNIMASFPPIQVTRTENFCCYNHILSFSDPQLEPNVH 79 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVI--YEREAPEGTVKDIKEQE--VYMGEIPLMTDNGT 135 +C+I+ +Y A ++VK+ I Y EG V+++ + + P+M ++ Sbjct: 80 IKPNDCRIQSSSYMAAIKVKISYTIQQYSFSNNEGLVQEVTYEPKLIDFCLFPVMVNSCL 139 Query: 136 FVINGTERVIVSQL--HR-----SP---GVFF---DSDKGKTHSSGKVLYNARIIPYRGS 182 +N T +V S + HR P G +F ++K G I+P Sbjct: 140 CYLN-TNKVAGSDIKAHRIINDECPYDEGGYFIIRGAEKAVIAQEGNRPNRLLILPG--- 195 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 D K+P T L + N T +L + V+ NK Sbjct: 196 ----------------DPGSKIPYTAQLVSTNSTK----NLHSKVVLKYWSTNKW----- 230 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 G+ + + ++ + D + + + A+D + Sbjct: 231 ----------------GRTIQDINQPQITFTMQGIRDDLPLFLLILALWQDNVYAARDLL 274 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + + ++ EL LL P + + Sbjct: 275 ---SIVVPDESDTELIEHLLPSY-----------------------NLFCSTPQSSKDKC 308 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 + + + GE ++A++ ++ L L +G + Sbjct: 309 IEFLAGRLVVGEQ--MDSAKAKYDRLMSHLSTRLLPHIG-----------VTPEFHLDKA 355 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV----GLVRVERAVKER 478 I + L+ G+ DD DH G +R++ G + ++FR L R+ R + + Sbjct: 356 FFIGYMTNLLLQTVVGRRSPDDRDHWGGKRLQLTGSLLADKFRFEYELFLRRLARKLHDT 415 Query: 479 LSL-------------GDLDTLMPQDMINA----------------------KPISAAVK 503 S+ + + +PQ + IS + Sbjct: 416 GSILKVKEDISMVSPNIEGSSFIPQSKYDTHGKVPGLEDPRRLLDRIKVAATSYISKNIT 475 Query: 504 EFFGSS-------------QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 + +SQ + + + S ++ RR S+ + R + Sbjct: 476 SALSTGTWKTNEVVGNTKSGVSQSLVRLSYTSALSQIRRSSS----SVEETSKAIGPRLL 531 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTN--------EYGFLETPYR-KVTDGVVTD 601 H T +G +CP ETPEG +GLI + S+ A + L T YR + + G ++ Sbjct: 532 HTTQFGYMCPAETPEGAKVGLIKNFSLMANVTLDNPKDEHDLRKLLTEYRVQASHGPISV 591 Query: 602 EIHYLSAIEEGNYVIAQANSNLDEEG--------HFVEDLVTCRSKGESSLFSRDQVDYM 653 + + V ++ + G +V+ L+T + +V Sbjct: 592 LKSFHTVTNAKKLV---SDVKIFLNGSWLGFIDREYVQRLITDLKRWRFEGKINREVSIS 648 Query: 654 DVSTQQVVSVGA 665 ++ +Q +S+ + Sbjct: 649 YLAHKQEISISS 660 Score = 92.8 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 30/230 (13%) Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ-NTCINQMPCVSLG 774 ++ ++ + D ++ + + M G+ + IY L R + + P + Sbjct: 788 VLSAITSLIPFPDHNQSPRNLYQASM--GKQAVGIYALNYLKRFDTSGINVMHYPQL--- 842 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 P+ + P L GQN+ +A ++G+N EDS+++S+ V + Sbjct: 843 -PLVTTRSM---PHVKFRYLPAGQNVIIAIAVYSGFNQEDSLIMSQSAVDRGFMRATYYH 898 Query: 835 ELA------CVSRDTKLGPEEITADI-PNVGE----AALSKLDESGIVYIGAEVTGGDIL 883 S + E+ I PN+ S L+ G+ +G V ++ Sbjct: 899 TYEEMISSAASSINAPDRIEKFCRPIGPNIKGIKDPGCASYLEADGLPRVGNAVNSQRLI 958 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 +GK+ P + + RA+ D +D SL+V +G V V + Sbjct: 959 IGKIRPNKRSMNS------RAV---STYDFQDVSLKVKMEETGRVDSVII 999 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 26/190 (13%) Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH--YGRVCPIETPEGPNIGLI 572 +++ +S + HK+ IS G + D+HPT + T E + Sbjct: 641 INREVSISYLAHKQEISISSDEGRVTRPVFVVITDIHPTLKLVTNLSLAITEED-----V 695 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIA----QANSNLDEE 626 +L+ Q ++ L + G+ T + I +L EE +I + + Sbjct: 696 ETLATIPQMEQWNSLLS-------GLGTGKCMIEFLDPNEEEMALICMDIYHFKEEIQKA 748 Query: 627 GHFVEDLVTCRSKGESSLFSRDQV------DYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 + ++ + + ++++ V+S SLIPF +H+ + R L Sbjct: 749 HTIRDIILAHGEDNAINYIKAHNIPLANNYTHLEIHPSMVLSAITSLIPFPDHNQSPRNL 808 Query: 681 MGANMQRQAV 690 A+M +QAV Sbjct: 809 YQASMGKQAV 818 >UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK45_9CRYP Length = 1100 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 58/293 (19%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + VK+ L R+ + GDK + RHG KGV I +D+P+ +G D+++NP G PSR Sbjct: 850 IFFVKLILRQIRQPEVGDKFSSRHGQKGVCGAICFQKDLPFSNDGIIPDLIMNPHGFPSR 909 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M + G + +G KI ++ + + Sbjct: 910 MTV--------GKVIEIMGAKIGSIFGKFIDGTP-------------------------- 935 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 F +K A+IK+ LK+ + G+ + G TG V Sbjct: 936 --------------------FIESKIAKIKKKLKIAGYSSEGKEFFFSGITGVPMLMDVF 975 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G ++ KL H+V DK+HAR G S +T+QP+ G+++ GG RFGEME L +YGA+ Sbjct: 976 SGPVFYQKLKHMVKDKIHARGKGPCSNITRQPIEGRSRGGGLRFGEMERDCLISYGASEA 1035 Query: 1287 LQEMLTVKSD----DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 + E L + SD + + T + + + + +P + +L +E++S+ I Sbjct: 1036 IIERLLISSDLTQANFDLHTGFFTDKKKSLNIVSLKLPYACKLLFQELQSMNI 1088 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 87/604 (14%), Positives = 212/604 (35%), Gaps = 93/604 (15%) Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISE----TLRVDPTNDRLSALVEIYRMMRPGE 374 + L L G ++ + I E ++ + A+ I + Sbjct: 215 IPLFIFLKSLGFEKDREILDLIGKEYENILEWSLFETKLAGITSKKQAIFYIVQRF-NFN 273 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID--VMKKL 432 ++ +++ F++ +SE+ + G KF + L ++ G L + I ++KK+ Sbjct: 274 LFEKKFSDNAFKSKSYSENEF-FFKEGLTKFILTHLTPKVFYGGNLEEKGIFLSLMVKKI 332 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM 492 N D+ D+ GN+R+ G + F + + + L Q + Sbjct: 333 FSNLNQPMITDNKDYYGNKRLGLAGNLVSILFEDFFRKTLKEGYKYYKLNSTKLKKNQHL 392 Query: 493 -----INAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISALGP 535 + I+ ++ F + +Q + + + +S I+ +I++ Sbjct: 393 ELISFLRQDIITNGLEYSFSTGNWIVKKLKIEKNGVTQTLSRLSFISSISIVTKITSQNE 452 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN----EYGFLETPY 591 + R R +H + +G +CP +TPEG + GL+ L++ A + + Y Sbjct: 453 ----KIRKIRGPRSLHSSQWGMICPTDTPEGESCGLVKDLTILAHISVKIKTRFITQLCY 508 Query: 592 RKVTDGVV--TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 + ++ + +L ++ + + +F+ + R G + Sbjct: 509 DLGIENLIHPKKKNFFLEKKICKIFLNGRYLGIHNNPSYFMYSFRSMRRSGMINY----- 563 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV-----PTLRAD----KPLV 700 Y+ + + ++ F + R + ++ + + L+ + K L Sbjct: 564 --YVSIFWD---TFSEEIVIFTDEGRICRPFLIVDLGKVKIKNFEKKLLKKNLTFCKDLF 618 Query: 701 GTGMERAVAVD-----------------------SGVTAVAKRGGVVQYVDASRIVIKVN 737 TG+ + V+ S + ++ ++D ++ Sbjct: 619 LTGLLEFLDVNEQNNAFIAQSPQYINNKTTHLEISPEIVLGICASLIPFLDHNQSPRNTY 678 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCIN---QMPCVSLGEPVERGDVLADGPSTDLGEL 794 + M G+ I +L + R + + Q P V G L Sbjct: 679 QCAM--GKQAIGSISLNQNQRCDTILSLLIYPQKPLVKTKMVYFSG----------NNRL 726 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK-LGPEEITAD 853 G N V + ++G++ ED+I+++ ++ F ++ ++ + +++ LG + Sbjct: 727 TSGINACVCILSYSGFDIEDAIILNRSSIERGFFRSVIARKHKILLKNSDFLGAKSFERP 786 Query: 854 IPNV 857 +PN+ Sbjct: 787 LPNL 790 Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 131/781 (16%), Positives = 253/781 (32%), Gaps = 159/781 (20%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 K+F +L L+ Q++SF F+ D + F + I + L++ Sbjct: 7 KNFNLVSYILKSKGLIWQQIESFNYFLNTDIKKI-----IFMNQKKIFDSDDSFFLKFSK 61 Query: 73 YRLG---------EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 ++G E +C+ +Y+ + L I +++ Sbjct: 62 LKIGLASEYLNFMEMPISPYQCRTTDSSYTGTIFFDLSFKIEKKKFNVFNFN-------- 113 Query: 124 MGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPG-VFFD 158 +G+IP+M G F++ GTE+VI+ Q S + + Sbjct: 114 LGKIPIMLQSNKCILFSKNENEFLSLNECPLDPGGYFILKGTEKVILIQEQVSANRINIE 173 Query: 159 SDK-------GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILR 211 D+ + SS K + N + + F K LFV ++P I L+ Sbjct: 174 QDQHGSICAVVNSFSSNKKIRNVVFLKNQ----KLYF--KHKLFVE-----EIPLFIFLK 222 Query: 212 ALNYTTE-QILDLFFEKVIFEIRDNKLQMELVPERLRG-----ETASFDIEANGKVYVEK 265 +L + + +ILDL ++ +N L+ L +L G + + ++ EK Sbjct: 223 SLGFEKDREILDLIGKE-----YENILEWSLFETKLAGITSKKQAIFYIVQRFNFNLFEK 277 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI---DESTGELICAANMELSLDLL 322 A + +++ E ++I + K + E G + + + Sbjct: 278 KFSDNAFKSKSYSENEFFFKEGLTKFILTHLTPKVFYGGNLEEKGIFL----SLMVKKIF 333 Query: 323 AKLSQSGHKRIETLFTND-LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 + L+Q + + N L + L D L + Y++ + Sbjct: 334 SNLNQPMITDNKDYYGNKRLGLAGNLVSILFEDFFRKTLKEGYKYYKLNSTKLKKNQHLE 393 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 F + + S + L E+ + LS+ I + + I + + Sbjct: 394 LISFLRQDIITNGLEYSFSTGNWIVKKLKIEKNGVTQTLSRLSFISSISIVTKITSQNEK 453 Query: 442 VDDIDHLGNRRIRSVGEMAENQFR-------------------VGLVRVERAVKERLSLG 482 + R+IR + +Q+ L + +K R Sbjct: 454 I--------RKIRGPRSLHSSQWGMICPTDTPEGESCGLVKDLTILAHISVKIKTRFITQ 505 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 L +++I+ K K FF ++ + L + Sbjct: 506 LCYDLGIENLIHPKK-----KNFFLEKKICKIFLNGRYLGIHNNPSYFMYSFRSMRRSGM 560 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIG--LINSLSVYAQTN-EYGFLETPYRKVTDGVV 599 + V + + I T EG LI L N E L+ D + Sbjct: 561 INYYV-SIFWDTFSEEIVIFTDEGRICRPFLIVDLGKVKIKNFEKKLLKKNLTFCKDLFL 619 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 T + +L E+ N IAQ+ ++ ++ ++++S + Sbjct: 620 TGLLEFLDVNEQNNAFIAQSPQYIN-----------------------NKTTHLEISPEI 656 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAV----------------PTLRADKPLVGTG 703 V+ + ASLIPFL+H+ + R M +QA+ + KPLV T Sbjct: 657 VLGICASLIPFLDHNQSPRNTYQCAMGKQAIGSISLNQNQRCDTILSLLIYPQKPLVKTK 716 Query: 704 M 704 M Sbjct: 717 M 717 >UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus RepID=A4RSZ5_OSTLU Length = 1145 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 97/422 (22%), Positives = 162/422 (38%), Gaps = 103/422 (24%) Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK--LDKLPRDRWLELGLTDEEK 1007 L + + E + L+ ++ +++ G D + + R + L TD Sbjct: 794 NETLSRRDNTYTSENKQLDGTGSVQLGSIVRPGDTLLNLHSSDGVTKGRSIRLRGTDAAV 853 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 +++ ++ ++ T+ D K + L R GDK + Sbjct: 854 VDKV---------------VLTQSVKQAATKND-------KRAAITLRYDRNPVIGDKFS 891 Query: 1068 GRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 RHG KGV+S + P EDMP+ + G D+++NP PSRM IG ++E+ A G Sbjct: 892 SRHGQKGVLSFLWPEEDMPFSDRTGLRPDVIINPHAFPSRMTIGMLVESLAAKAGASTGI 951 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 +A P Sbjct: 952 FADA-------------------------------------------------TPFKHSD 962 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD--DKMH 1244 + + E +LL+ G RL +G TGE F + +G +Y +L H+V H Sbjct: 963 KEISPTEEYGKLLRESGYNFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHMVSLFHTFH 1022 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG---- 1300 RSTG + +T QP+ G+ GG RFGEME +L A+G AY L +L + SD+ + Sbjct: 1023 VRSTGPNNPLTMQPIKGRKSGGGIRFGEMERDSLLAHGVAY-LVSLLHICSDNRDAWVCN 1081 Query: 1301 ---------------RTKMY------KNIVDGNHQME-PGMPESFNVLLKEIRSLGINIE 1338 RT Y + D H++E +P F L E+ ++ I+++ Sbjct: 1082 MCGSLIAPLTCVASIRTDEYSSRRTSCRVCDSAHKLERISIPHVFIYLTAELAAMNISVQ 1141 Query: 1339 LE 1340 ++ Sbjct: 1142 VK 1143 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 108/570 (18%), Positives = 192/570 (33%), Gaps = 99/570 (17%) Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAE----NQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 I G+ DD D L N+ + G + + + R+ +V ++ + G Sbjct: 364 IVTGRCSPDDPDSLVNQEVLVPGLLLQAMIREKVRIAFQKVVTHLRR--TQGSWSEETIS 421 Query: 491 DMINAKP---ISAAVKEFFGSSQL--------SQ------FMDQNNPLSEITHKRRISAL 533 +IN + V+ F + L SQ ++ N I+H R ++ Sbjct: 422 HLINESGSSDVGKVVEYFLATGNLVSPTGLGLSQTSGFTIVAEKLNYFRYISHFR---SV 478 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 G E VR + P +G +CP+ TP+G GL+N L+ + +T + Sbjct: 479 HRGAYFMELRTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAEMCEIV---MPDTDHVF 535 Query: 594 VTDGVVTDEIHYLSAIEE-GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 ++ A+ Y A+ + EG FV ++ + R Sbjct: 536 QQKRLLQIHSVLDRALISVEQYDCGYAHVPVVLEGSFV-GYISAENASHVISALRAFKVT 594 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK---PLVGTGMERAVA 709 + S ++ + + P EH + R P + + +GT +E+A Sbjct: 595 LTTSVLRMSEISY-IHPGGEHGLFPGLYIFYGPSRLMRPVKQVESMKVEFIGT-LEQAFL 652 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 S + Y A I+ + + +S +N QM Sbjct: 653 SISAHQVESHNA---SYTHAE---IRNTSALSCVASLT----PWSDFNQSPRNMYQCQMA 702 Query: 770 CVSLGEPVE----RGD-----------VLA-----DGPSTDLGELALGQNMRVAFMPWNG 809 ++G P+ R D LA D S D + ALG N VA + + G Sbjct: 703 KQTMGTPMHTICYRSDTKLYRLHTPQRPLALTCTYDKYSLD--DYALGTNAVVAVIAYTG 760 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 Y+ ED+++V++ + + L +S + L + T N +LD + Sbjct: 761 YDMEDAMIVNKGSLHRGFAHATLYKTLVEGISANETLSRRDNTYTSEN------KQLDGT 814 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 G V +G+ V GD L+ K S+R+ G V Sbjct: 815 GSVQLGSIVRPGDTLLN--------------------LHSSDGVTKGRSIRLR-GTDAAV 853 Query: 929 IDVQVFT---RDGVEKDKRALEIEEMQLKQ 955 +D V T + K+ + I + Sbjct: 854 VDKVVLTQSVKQAATKNDKRAAITLRYDRN 883 >UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=Pseudomonas aeruginosa RepID=Q5ZH00_PSEAE Length = 364 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 130/177 (73%), Positives = 155/177 (87%) Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + LMPQD+INAKP++AA+KEFFGSSQLSQFMDQNNPLSEITHKRR+SALGPGGLTRERAG Sbjct: 1 EGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAG 60 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 FEVRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V D +VTDEI Sbjct: 61 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIV 120 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 +LSAIEE ++VIAQA++ L+E+G V++LV R E ++ + + V MDVS +QVV Sbjct: 121 FLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVV 177 >UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenophorea RepID=Q23G41_TETTH Length = 1226 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 96/435 (22%), Positives = 162/435 (37%), Gaps = 78/435 (17%) Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 D + + +++ + KK+ ++E F + ++ KL Sbjct: 837 DSIIINQSAIDRGLFRSILYRTYKTTEKKEHMGLNPVIEHIRFPDEKKTIIPASYSFLKL 896 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK- 1048 D ++ ++ +L + K + L +R +I D + K Sbjct: 897 DYDGIIPPGTQVTGEDVLIGKVVELPKTEGSDKQYKDVSLGCRRSEIGYVDTVILSEDKD 956 Query: 1049 ---IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 IVKV L R Q GDK A RHG KG ED+PY+ G ++V+NP +PS Sbjct: 957 GMYIVKVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGEDLPYNIEGIIAELVINPHCIPS 1016 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM IG ++E G+ K++++ Sbjct: 1017 RMTIGHMIE--------GLNSKLSSL---------------------------------- 1034 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 KG+ F G K +I L G LY+ TG + + Sbjct: 1035 ------------KGIWGDATPFSGIKLQDIASELHTYGYQRYGNEVLYNPYTGMRLSTQI 1082 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G + +L HLVDDKM++RS G + +QP G+++ GG RFGEME + A+G + Sbjct: 1083 YYGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGGLRFGEMERDCIIAHGTSN 1142 Query: 1286 TLQEMLTVKSD----DVNGRTKM------------YKNIVDGN----HQMEPGMPESFNV 1325 L+E SD V R + G+ ++ +P + Sbjct: 1143 FLKERTFGVSDQFRTHVCSRCGLFAKADVTNHKYDCTGCSQGDKKHYKIVQVYLPYAAKQ 1202 Query: 1326 LLKEIRSLGINIELE 1340 L++E+ ++ I ++ Sbjct: 1203 LIQELMAMHIVPRIK 1217 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 131/729 (17%), Positives = 248/729 (34%), Gaps = 132/729 (18%) Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 ++ E+ + L ++++ + + L L N++ AL+ I + Sbjct: 303 VESDKEMMERIFYNLKDPKNEQMMEMLRSSL---------LLAQHCNNKREALIFIGYRI 353 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 ++ ++ + Y L +G +E + L I +++ Sbjct: 354 NA--TTNYRGSQEAMQSAEDTLKLYLLPHIGT---------QESDNDKKL--FFIGYMIQ 400 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--------G 482 KL++ GK + DD DH G +R+ G + F+ L ++ K+ L Sbjct: 401 KLLNAALGKTQEDDRDHYGKKRLDMAGALISQLFKERLRIFQKNAKKNLQQKINDISRDA 460 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD--------------QNNPLSEITHKR 528 + D+ + K IS ++ + Q D + + ++H R Sbjct: 461 QKSLNVIVDIFDHKLISDHIRLALATGNWGQTADGEVVKTGVAQVLKRDTSLFATMSHMR 520 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN--------SLSVYAQ 580 R++A + R +H THYG +CP ETPEG IG++ SL + +Q Sbjct: 521 RVNA----PMKSAAKLARPRQLHNTHYGLICPAETPEGQKIGMVKNLSLLAQVSLGLSSQ 576 Query: 581 TN---EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 N + E + + ++I Y + + I + F E + Sbjct: 577 DNLKIQEQLEEQINQFDILNLKLEKIPYQTKVFFNGNWIGFTETPEQIIDVFKEIRRLQK 636 Query: 638 SKGESSLFSRDQVDY-MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 G S + RD ++ + + T Q G + P + + + + + Sbjct: 637 IDGFSIV--RDIINKEIRIYTDQ----GRGMRPVFTVQEICEGKNRLKITKSKLYAILQQ 690 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRG---GVVQYVDASRIVIKVNEDEMYPGEAGIDIYN- 752 G +D G + G + VD + + +I+ Sbjct: 691 ----FEGKAFQKLIDEGFIELLDVEEEEGALIAVDINDFYHTDDPRRTNLPFTHCEIHPA 746 Query: 753 --------LTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADGPS------------- 788 + + NQ NT + M ++G + D Sbjct: 747 MILGVCASVIPFGHHNQGPRNTLQSAMGKQAMGLNSTNFHMRLDTLCHILYYPQIALASS 806 Query: 789 -----TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 ++ +G N VA + GYN EDSI++++ + F +I + + Sbjct: 807 KSLQYITAKDIPIGSNAVVAIACFTGYNQEDSIIINQSAIDRGLFRSILYRTYKTTEKKE 866 Query: 844 KLG----------PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +G P+E IP + KLD GI+ G +VTG D+L+GKV +T Sbjct: 867 HMGLNPVIEHIRFPDEKKTIIP--ASYSFLKLDYDGIIPPGTQVTGEDVLIGKVVELPKT 924 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG----VEKDKRALEIE 949 + + ++ KD SL G V V + V+ R+ I Sbjct: 925 EGSDKQ-------------YKDVSLGCRRSEIGYVDTVILSEDKDGMYIVKVKLRSNRIP 971 Query: 950 EMQLKQAKK 958 ++ K A + Sbjct: 972 QIGDKFASR 980 >UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus RepID=Q6YH81_9VIRU Length = 1221 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 81/310 (26%), Positives = 129/310 (41%), Gaps = 64/310 (20%) Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D+ K+VKV L R + GDK A KG + EDMP+D+NG D+++NP Sbjct: 966 DVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKNGVVPDLIINP 1025 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 PSRM + +L+ G AA +G + D Sbjct: 1026 HAFPSRMTVNYLLQMCFGTAACKLG-------------------------------KTYD 1054 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + F E+V+R +I E K + LY G TG + Sbjct: 1055 ATAFEREDVVR----------------------DIAEAAKEAGIDCW-DSVLYSGSTGRR 1091 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + + +L H+V KMH+R+ G +T+QP+ G+++ GG + GEME W + Sbjct: 1092 LPTKIFMAPCPYQRLRHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEMEQWCKIS 1151 Query: 1281 YGAAYTLQEMLTVKSDDV-------NGRTK---MYKNIVDGNHQMEPGMPESFNVLLKEI 1330 +G + +L+E + SD GR Y + D +P + +L +E+ Sbjct: 1152 HGVSESLKESVYDTSDKYEVPVCKECGRISDHFEYCRMCDATDVSLVKLPYTTKILFQEL 1211 Query: 1331 RSLGINIELE 1340 RS+GI+I + Sbjct: 1212 RSIGISIAFK 1221 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 120/635 (18%), Positives = 214/635 (33%), Gaps = 128/635 (20%) Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + R +L EI G + + + ++K++ D +G G D D L N+R+ + G + Sbjct: 388 YVRHILAGEIFLHGGDAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLL 447 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPISAAVKEFFGSSQL------------ 511 L + + + S G L P ++ N+ ++ ++ F + Sbjct: 448 DGLLKQYVKLFVK--SAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPPSYVR 505 Query: 512 ---SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQ + NN + ++H RRI ++ +R +H +HYG +CP ETPEG Sbjct: 506 VGVSQVLSNNNYGARVSHLRRI----MHAVSFRGKNIRMRQLHSSHYGFLCPYETPEGEK 561 Query: 569 IGLINSLSVYAQTNEYGF-LETPYRKVTDGVVTDEIHYLSAIEEG-----NYVIAQANSN 622 +G++ +++ GF LETP V V + L EG + A +++ Sbjct: 562 VGIVLNMA-----EGVGFSLETPREAVLATVRLGKG--LPGFFEGAPARLAWSGAAGSAS 614 Query: 623 LDEEG----------HFVEDLVTCRSKGESSLFSRD-QVDYMD---------VSTQQVVS 662 +D +G FV + C + ++ + + + + Sbjct: 615 VDVDGVLCGVTGDPVGFVREARLCLLGVSVVWKKVEREIHLLGCQGRFVRRVLDPEGIRG 674 Query: 663 VGASLIPFLEHDD--ANRALMGANMQRQAVP----TLRADKPLVGTGMERAVAVDSGVTA 716 P E D + A + P + + G + Sbjct: 675 SRYDNPPPPEERDIEMDPAPSSSPSDFLPRPPGVYVCAQELSVCSLGDGEYADPPASEIL 734 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT-KYTRSNQNTCINQMPCVSLGE 775 V+ + D ++ + M G N + +Y + Q V Sbjct: 735 TDAMSSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYPQKSLVDSRS 794 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 G E+A G VA M G+N EDS++++ + F+ + + Sbjct: 795 VKRLG----------FDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRT 844 Query: 836 LAC-VSRDTKLGPEEITADIPNVG----EAALSKLDESGIVYI---GA------------ 875 ++C R TK E + +P+ G E L + G++ GA Sbjct: 845 VSCADKRRTKYDSEVV--CLPDWGLRNREWDYDLLGDDGVIDPLCAGALVRRVEGKRKAA 902 Query: 876 -------------------EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 + G +LVGKV+ L PE G +D+ Sbjct: 903 KRPVDQRTGGGPAGLCDALWIPAGTVLVGKVS----HSLGPE--------GNPVR--RDA 948 Query: 917 SLRVPNGVSGTVIDVQV-FTRDGVEKDKRALEIEE 950 SL V G + V V DG + K L Sbjct: 949 SLTVKQSEEGYLDRVTVDVDSDGKKLVKVRLRTPR 983 >UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB0F Length = 1114 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 137/338 (40%), Gaps = 65/338 (19%) Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 +Y K ++ ++ G+ L V + V R GDK A R G KG Sbjct: 829 LSKYVVEKFHGKEIAYVDNVRLCCGETLNSAS---VCITFRVPRNPVVGDKFASRAGQKG 885 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 + S++ P ED+P+ ++G D+V NP G PSRM I ++E G +A G Sbjct: 886 ICSQMWPCEDLPFTDSGLVPDVVFNPHGFPSRMTIAMMIELMAGKSASVHG--------- 936 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + D + F E D + Sbjct: 937 ----------------------KVHDATPFIFSE-------------------DNSAIDY 955 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 +LL+ G ++Y G G + + G +Y +L H+V DK RSTG + Sbjct: 956 FGKLLEAAGYNYYGTEKMYSGVDGREMNAAIFFGIVYYQRLRHMVLDKWQVRSTGPVDTL 1015 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN------- 1307 TQQP+ G+ + GG RFGEME +L ++GA+ L + L SD R+ +++ Sbjct: 1016 TQQPIKGRRRGGGVRFGEMERDSLISHGASALLHDRLFECSDKYKARSALFRCPKTGVKK 1075 Query: 1308 -----IVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 DG + +P F LL ++ ++ I++++ Sbjct: 1076 EVCRLCSDGGNVKTIEIPYIFRYLLIQLAAVNIHLKVY 1113 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 108/742 (14%), Positives = 242/742 (32%), Gaps = 123/742 (16%) Query: 214 NYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH 273 I F + I + L P L + D G ++ KG R Sbjct: 127 GVNQHPIEKDFGKIPIMIKSNRCHLKNLTPRELVEKNEHED--EWGGYFILKGHEKLIRM 184 Query: 274 IRQLEK----------DDVKLIEVPVEYIAGKVVAKD---------YIDESTGELICAAN 314 + + + + I + V++D ++ + T +++ + Sbjct: 185 LIATRRNYPIALSRRTWKQRGASFSEKGILLRCVSEDETSTNNVLHFVTDGTVKVMLSYG 244 Query: 315 MELSLDLLAKLSQSGHKRIETLFT--------NDLDHGPYISETLRVD----PTNDRLSA 362 L L + +S + L+ +D + +T+ D + A Sbjct: 245 RSLYFIPLCLILKSLI-NVSDLYVFKRLTEGRDDDFYFKSCIKTMLYDVHVQGIDTHEEA 303 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFF-SEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 I + R P ++ +F DL + + + +++ Sbjct: 304 KCFIGKTFRLKFPD---------QSPWFTDAQICDLIMEKCLAIHLNDNKDKF------- 347 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----E 477 + +I + +KL G+ ++ D L + I + G + + + L ++ + Sbjct: 348 -NLLIFMTQKLFAFVQGQCCEENADSLMVQEILTGGSIYQQVLKDRLQGFLNNLRLVASK 406 Query: 478 RLSLGDLDTLMPQDMIN----AKPISAAVKEFFGSSQ-------------LSQFMDQNNP 520 +LS G L+++ M + A I A+ F + L + N Sbjct: 407 KLSEGKLNSISQIQMASFCKRAGGIEKAMNNFVATGNCHNSLSGLPQDKGLVIMAENINR 466 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 + ++H A+ G + R + P +G +CP+ TP+G GL+N LS Sbjct: 467 MRYMSH---FKAIHRGAYFTTMRTTDGRQLLPEAWGFICPVHTPDGSPCGLLNHLSKDCI 523 Query: 581 TNEYGFLETPYRKVTDG--------------VVTDEIHYLSAIEEGNYVIAQANSN---- 622 P ++ +V + +Y + +G + A++N Sbjct: 524 VT-----NVPDYEILKNLSCVLTDLGVMPLEIVEKKNNYYDVLLDGKLIGYVADTNAQNL 578 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 + + + E L + + + P L L+G Sbjct: 579 VQSLRVLKIEGNVVPNTLEIVLVPKKDSESQYPGIFLFTGPNRLMRPVLNLALNKTELIG 638 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 Q L+ ++ G + + S T ++ ++ D ++ + + +M Sbjct: 639 TFEQVYLEICLKLNEAYEGLTTHKEL---SHTTFLSNLACLIPMPDCNQSPRNMYQCQMG 695 Query: 743 PGEAG--IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 G + +++ T+ + P G + L + +G N Sbjct: 696 KQSMGTPVHTWDIQAETKL-YRLLLPSSPLFRPGHY----------DAIKLDDFPMGVNA 744 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ-ELACVSRDTKLGPEEITADIPNVGE 859 VA + + GY+ ED++++++ + ++ E ++ D+ + A++ Sbjct: 745 VVAVISYTGYDMEDAMIINKSSFERGFGHGTILKSEFFHLNPDSYFERDPSKAEL----- 799 Query: 860 AALSKLDESGIVYIGAEVTGGD 881 +SKLD+ G+ + G V D Sbjct: 800 --ISKLDDDGLPFPGTLVEEND 819 >UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LHP3_9ALVE Length = 993 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 112/609 (18%), Positives = 212/609 (34%), Gaps = 105/609 (17%) Query: 404 KFNRSLLREEIEGSGI-------LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 ++ + LL++E+ I ++ +L+ + G+ DD DH G +R+ Sbjct: 362 RYAKELLQKELLPHLGVKQYCEPRKAYFIGYMVHRLLLGQLGRIAEDDRDHFGKKRMDMA 421 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGD--------LDTLMPQDMINAKPISAAVKEFFG- 507 G + F ++ + K L + I +G Sbjct: 422 GPLMAASFAQLFRKLVQDSKRILQRQVDSGRHFDLNSAIRSASSITDGLRYQLATGNWGI 481 Query: 508 -------SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 + +SQ +++ +S ++H RR++ L R + R +H TH+G +CP Sbjct: 482 DKSGKSVRTGVSQVLNRLTFMSTMSHLRRMNT----PLERSGKLAKPRQLHNTHWGMICP 537 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN 620 ETPEG +GL+ ++++ G L + + + ++ + + N Sbjct: 538 AETPEGQAVGLVKNIALMCTIT-VGSLPNVVYDFLNEWGLENLDEINPSQIKHMTKVFLN 596 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY-MDVSTQQVVSVGASLIPFLEHDDANRA 679 G +V E+ R + D +VS + + I F + A R Sbjct: 597 ------GQWVGMHADATMLCETLRDLRRKRDIDPEVSIIRDLQANELRI-FTDGGRACRP 649 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMER----AVAVDSGVTAVAKRGGVVQYVDASRIV-- 733 L Q P+ + + +E + + G + G+V+Y+DA Sbjct: 650 LYVV----QPPPSQK--LCIKREHVEALRRMLLNNEHGGWDMLVEEGLVEYIDAEEEETC 703 Query: 734 --------IKVNEDEMYPGEAGIDIY---------------NLTKYTRSNQ---NTCINQ 767 ++ + + Y ++ + NQ NT + Sbjct: 704 MVAMFVDDLRNAQRRKSKASSYCHTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 763 Query: 768 MPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMPWNG 809 M ++G ++ D + EL G N VA M ++G Sbjct: 764 MGKQAMGVYATNFNMRIDTMAHVLNYPQKPLVGTRAMEYLRFRELPAGNNAIVAIMTYSG 823 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEIT----ADIPNVGEAALSK 864 YN EDS++++ + ++H + R EE + + SK Sbjct: 824 YNQEDSLIMNASSIDRGFMRSVHFKSYMADEKRQGAQVVEEFRAPSWSKTYAMKRGDYSK 883 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LD G++ G V G DIL+GKV+P T EE ++ +D S+ + Sbjct: 884 LDNDGLINPGTRVHGDDILIGKVSPIP--NQTDEEGRIQK------YTERDCSVALKGAD 935 Query: 925 SGTVIDVQV 933 +G V V + Sbjct: 936 NGVVDQVML 944 Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 16/168 (9%) Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE---LQILEAGLFSRIRAVLVA 981 G + V + EK + A +EE + K + + L+ + Sbjct: 839 RGFMRSVHFKSYMADEKRQGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHG 898 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 + K+ +P TDEE ++++ E+ + + + ++ Sbjct: 899 DDILIGKVSPIPNQ-------TDEEG--RIQKYTERDCSVALKGADNGVVDQVMLSVN-- 947 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 K K+ + R GDK A RHG KG + EDMP+ + Sbjct: 948 --ARGHKFTKIRVRTLRVPTIGDKFASRHGQKGTMGISYRQEDMPFTQ 993 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 62/176 (35%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN----------------SELQY 70 L+S Q+ SF F+ ++ PI N +++ Sbjct: 127 LVSQQVGSFDDFVTYK------MQEIVDECPPITIIPQNQVGWESEGARVYMDSSFLVEF 180 Query: 71 VSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIY------EREAPEGTV 114 L +P + ++R +TYS+P+ V + Y + + + + Sbjct: 181 GQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPDDPNSEKQLI 240 Query: 115 KDIKEQEVYMGEIPLM-----------TDN-------------GTFVINGTERVIV 146 + ++ +G IP+M T+ G F+ING+E+V++ Sbjct: 241 SEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIINGSEKVLI 296 >UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax=Theileria parva RepID=RPOB_THEPA Length = 1005 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 105/522 (20%), Positives = 210/522 (40%), Gaps = 33/522 (6%) Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF--RVGLVRVERAVKERLSL 481 DI+ ++ K +++ K + ++L N+ SV + QF V + +E+ Sbjct: 233 DILSIVNKFLNLNLKKKFIQSSNNLINKSTNSVLKTIFRQFTKSVTIFDIEKYC------ 286 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT-- 539 D L+ + I KE + + + DQ N LS +T+K +I+ G + Sbjct: 287 ---DKLLYKKKIFRSFNIVLFKEHLLVNPVIHYTDQLNVLSYLTNKFKINIFGYSNSSND 343 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 + + +R + + G + + TP+G GLI+ L+ +++ + Sbjct: 344 KFKVSTNLRKIQSDYIGFINIVNTPDGDTCGLISKLANNTILDKFKL----KLINCNNEY 399 Query: 600 TDEIHYLSAIEEGNYVIAQAN-SNLDEEGHFVEDLVTCRSKGESSLFSRDQ-VDYMDVST 657 + + + Y + N N+ + F + E L + D+ +++ Sbjct: 400 FENFTKIDITSKNLYNMTSNNFINIKKNSTFKVKQIEVFKNNEFKLINFDKNKTNKNLNV 459 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +S+ +IPFL ++D R LMG+ M QA+P + + P V T + Sbjct: 460 FNTLSITELIIPFLFNNDPCRGLMGSKMHTQALPLIYNEHPYVMTKYNHMNGLLFNKCIT 519 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 + G++ V+ +I++ +++ Y L + + N+ ++ P V +GE + Sbjct: 520 SLCEGIIVSVNNYKIIVMDDKNRYLH-------YYLYPFNVLDYNSFVSYKPIVWVGEKI 572 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 G +LA E LG N + + +NGY ED+I++++ ++ ED T+I Sbjct: 573 NIGKILALPSDLKHSEFTLGVNNLLNYSFYNGYEHEDAIVINKNLIIEDILTSISFDVYE 632 Query: 838 CVSRDTKLGPEEIT-ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 KL E+T + ++E G+ + GDIL K+ + E L+ Sbjct: 633 EYLSINKLDYVELTLRHLLEYNRYNRYLINEVGVSSNQDYMLFGDILSTKI--RYELSLS 690 Query: 897 PEEKLLRAIFGEKASDVKD----SSLRVPNGVSGTVIDVQVF 934 +K + + K L + G G +I ++ Sbjct: 691 KNKKFFKVFKLIFKENKKLIVYTKPLTIKRGGEGRLIKYEIL 732 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 126/292 (43%), Gaps = 53/292 (18%) Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 + ++ RI GDK+ GRHGNKGV+SKI D+PY G + +P+G +R+N+G Sbjct: 755 RFFIFKIDRINIGDKLCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGALARINLG 814 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 Q LE G +I A + +++ ++ Sbjct: 815 QFLEGSCGYFGLNFNCRIKAPINLYNYHLYSNMYLKNIFNSLNVYNNSY----------- 863 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 + S + L D +TG Q + + Sbjct: 864 ---------------------------------INFSIEKYLRDFKTGYQLKNFNLMLMP 890 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y LKL H K R+ G YS +TQQP+ GK G Q+FGEMEVWALE++G+AYT++E+ Sbjct: 891 YFLKLMHTSKSKFQYRTVGKYSSLTQQPVKGKRVNGSQKFGEMEVWALESHGSAYTIREL 950 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 +K++ K H+ G E+F VL E++++ INI D Sbjct: 951 GYIKTN--------VKYFKKFEHKGYKG-SETFKVLTLELKNVLININRVDN 993 >UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Tax=Roseobacter sp. GAI101 RepID=B7RK98_9RHOB Length = 309 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 115/220 (52%), Positives = 155/220 (70%), Gaps = 4/220 (1%) Query: 105 YEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 + RE VKDIKEQ+V+MG++PLMT NGTFV+NGTERVIVSQ+HRSPGVFFD DKGKT Sbjct: 46 FTREVRRVAVKDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKT 105 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 HSSGK+L+ RIIPYRGSWLDFEFD KD +F RIDRRRKLP T +L AL E I+D + Sbjct: 106 HSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAY 165 Query: 225 FEKVIFEIR-DNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQL-EKD 280 ++ V + ++ P+R+RG ++D+ A G+V EKG+++T R ++QL ++ Sbjct: 166 YDTVTYTLKAGEGWVAPFYPDRVRGTRPTYDLIDAATGEVLFEKGKKVTPRAVKQLVDEG 225 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + +P E+I GK A+D I+E TG + E++L+ Sbjct: 226 KVSELVLPFEHIVGKFAARDIINEETGAIYVEPGDEMTLE 265 >UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W234_PYRTR Length = 1167 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 96/451 (21%), Positives = 167/451 (37%), Gaps = 92/451 (20%) Query: 909 KASDVKDSSL-RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK-----QAKKDLSE 962 K ++ + ++P G + TV V + G + + + + + Q K Sbjct: 787 KTRTIELTKYDKLPAGQNATV---AVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVT 843 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA------- 1015 +L+ G RI A + + + +D ++G E L + Sbjct: 844 QLKTYANGTSDRINAGALDPD--NKNHQAIGKDGIAQVGARIEAGDAYLLKSIPVDTAGP 901 Query: 1016 --EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 Y + +++ + K ++ A + ++K+ RR + GDK + RHG K Sbjct: 902 PSNTYKDKPEKYKNPDYSYIDKTCVTENEA--GVTLIKLLFRQTRRPELGDKFSSRHGQK 959 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 G I EDMP+++ G DI++NP G ++ K+ Sbjct: 960 GTTGLIVQQEDMPFNDQGICPDIIMNPH----------------GFPSRMTVGKMM---- 999 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 E++ + G F G+ Sbjct: 1000 ----------------------------------ELLSGKAGVLNGTLEYGTAFGGSTVE 1025 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 ++ ++L +G+ L G TGE + G +Y KL H+V DKMH+R+ G ++ Sbjct: 1026 DMSKILVDKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAI 1085 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 +T+QP G+A+ GG R GEME L AYG G + K Sbjct: 1086 LTRQPTEGRARDGGLRLGEMERDCLIAYGGQM--------------GYSGYCKLCESEKA 1131 Query: 1314 QMEPGMPESFNVLLKEIRSLGIN--IELEDE 1342 + MP + +L++E+ S+ I I LEDE Sbjct: 1132 VRKITMPYAAKLLIQELGSMNIKVTIGLEDE 1162 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 124/644 (19%), Positives = 233/644 (36%), Gaps = 94/644 (14%) Query: 301 YIDESTGELICAANMELSLD----LLAKLSQSGHKRIETL----FTNDLDHGPYISETLR 352 Y+ + G + N ++ L + K I T+ + D+ E Sbjct: 291 YVIQKKGLMYLRHNTLSEEIPIVFVMKALGVASDKEILTMVAGEDSAYQDNFSINFEACA 350 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + + AL I +R + P + Y L A+ + N L Sbjct: 351 KEEIFTQERALEYIGHRVRLVKKPLGTS----------RNRNYHLEAIECLS-NVVLPHV 399 Query: 413 EIEGSGILSKDDIIDVM-KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 +EG+ K + +M ++++ VDD D++GN+R+ G+M F R Sbjct: 400 PVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRF 459 Query: 472 --------ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFF--GSSQLSQF-MDQNNP 520 ++ +K+ + + D ++ I+ V+ G+ L +F MD+ Sbjct: 460 NHDFKLSIDKVLKKPVRAQEFDAFSHFS-VHKNHITMGVERAIATGNWSLKRFKMDRAGV 518 Query: 521 LSEITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLIN 573 ++ I+ALG +TR + FE R + P+ +G +C +TPEG GL+ Sbjct: 519 THVLSRLSYIAALG--MMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVK 576 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYVIAQANSNL---DEEG 627 +L++ + P RK+ + +I L+ + EG Y + + + D Sbjct: 577 NLALMTHITTEDD-DDPVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTPIAVTDRPK 635 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 HF+ R G S F+ +D+ V + + R ++ QR Sbjct: 636 HFLNSFRGLRRMGRVSEFTSIHIDH------DHCEVHIAT----DEGRICRPMIIVENQR 685 Query: 688 QAVPTLRADKPLVGT-GMERAVAVDSGVTAVAKRGGVVQYVDAS-----RIVIKVNEDEM 741 V + GT E + G+V+Y+D + I +K + Sbjct: 686 SKVTSRYLKALRKGTLDFEDFLTR-----------GLVEYLDTNEENDTNIALKETDINQ 734 Query: 742 YPGEAGIDIYN-------LTKYTRSNQ---NTCI-----NQMPCVSLGEPVERGDVLADG 786 + I+ + L Y NQ NT V +P+ + + Sbjct: 735 HTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMDTLLYLMVYPQQPMVKTRTI--- 791 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 T +L GQN VA M ++GY+ ED++++++ +++ + G Sbjct: 792 ELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLKTYANG 851 Query: 847 -PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + I A + + + GI +GA + GD + K P Sbjct: 852 TSDRINAGALDPDNKNHQAIGKDGIAQVGARIEAGDAYLLKSIP 895 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 71/397 (17%), Positives = 130/397 (32%), Gaps = 80/397 (20%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFR-SVFPIQSYSGNSELQYVSYRLGEP------- 78 L+ +DS+ F++ + L+ + + F + L+Y R+ P Sbjct: 113 LVKQHVDSYNHFVDVE------LKKIIKVNRFVRSDFDPKFLLEYTDIRVLAPNRQEEDD 166 Query: 79 ------VFDVQECQIRGVTYSAPLRVKL-----------------RLVIYEREAPEGTVK 115 EC++R +TY+AP+ V + R+ I + Sbjct: 167 LDHHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLAG 226 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQ--------LHRSP-GVFFDSDKGKTHS 166 MGE PL G F+ G E+VI+ Q + S G+ S TH Sbjct: 227 KNDNDMAVMGECPL-DPGGYFITRGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHE 285 Query: 167 SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNY-TTEQILDLF 224 Y K +++R + ++P +++AL + ++IL + Sbjct: 286 RRTKTYV--------------IQKKGLMYLRHNTLSEEIPIVFVMKALGVASDKEILTMV 331 Query: 225 FEKVIFEIRDNKLQMELVP--ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEK--- 279 + + + E E E A I ++ K T+R+ + Sbjct: 332 AGEDSAYQDNFSINFEACAKEEIFTQERALEYIGHRVRLV--KKPLGTSRNRNYHLEAIE 389 Query: 280 --DDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD---LLAKLSQSGHKRIE 334 +V L VPVE + A + L+ N +L D + K + + + Sbjct: 390 CLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSGQMLS 449 Query: 335 TLFTN-----DLDHGPYISETLRVDPTNDRLSALVEI 366 LF + + D I + L+ A Sbjct: 450 LLFEDHFKRFNHDFKLSIDKVLKKPVRAQEFDAFSHF 486 >UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=Leotiomyceta RepID=A5H2B2_9LECA Length = 717 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 120/628 (19%), Positives = 222/628 (35%), Gaps = 143/628 (22%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPISA 500 DD DH G +R+ G + N FR ++ + V+ L + + + + I+ Sbjct: 1 DDRDHFGKKRLDLAGPLLANLFRTLFNKLNKDVERYLKNCIENNREFNLTLGVKSTHITN 60 Query: 501 AVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + SQ +++ S ++H RR + + R+ + Sbjct: 61 GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNT----PIGRDGKIAKP 116 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H TH+G VCP ETPEG GL+ +L++ + + P V D + ++ L Sbjct: 117 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVS----VGAPIEGVVDFLFQRQMESL- 171 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD-YMDVSTQQVVSVGAS 666 EE + + + + + G +V V+ D+ +QV++ S Sbjct: 172 --EEYDPLTSPHATKIFVNGVWVG----------VHRSPAALVNAVQDLRRKQVIAYEVS 219 Query: 667 LIPFLEHDDANRALMGANMQRQAVPT----LRADKPLVG-----TGMERAVAVDSGVTAV 717 L+ + + + + R P P+ G G + D + Sbjct: 220 LVRDIRDREFK---ILTDQGRVLRPLFVVENDPKSPICGDLVLNKGHIEKLESDRDIPLD 276 Query: 718 AKR---------------GGVVQYVDASR-----IVIKVNEDEMYPGEAG---------- 747 + GVV+YVDA IV+ + + Sbjct: 277 IDKEERVKKTYGWHGLVNEGVVEYVDADEEETVMIVMTPYDLNVSRQVQAGYALPEDNDD 336 Query: 748 ------------------------------IDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 + I + +S +NT + M ++G + Sbjct: 337 PNARVKAPINPTAHTWTHCEIHPSMILGVCVSIIPFPDHNQSPRNTYQSAMGKQAMGVFL 396 Query: 778 ERGD---------------VLADGPSTD---LGELALGQNMRVAFMPWNGYNFEDSILVS 819 D LA S + EL GQN VA ++GYN EDS++++ Sbjct: 397 TNYDQRMETMAHILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMN 456 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLG-----PEEITADIPNVGEAALSKLDESGIVYIG 874 + + F + + + L + + ++ + KLD+ G++ G Sbjct: 457 QSSIDRGLFRSPFFRSYSDQEGRIGLNVIEQFEKPMRSNTMKLKHGTYEKLDDDGLIIPG 516 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 A V+G DI++GK P E+L + I K + +D+S + + SG V V + Sbjct: 517 ARVSGEDIIIGKTAPITADA----EELGQGI---KIRERRDASTPLRSTESGLVDQVALT 569 Query: 935 TR----DGVEKDKRALEIEEMQLKQAKK 958 T V+ R +I ++ K A + Sbjct: 570 TNAEGHKFVKVRMRTTKIPQIGDKFASR 597 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 74/198 (37%), Gaps = 54/198 (27%) Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 K VKV + + Q GDK A RHG KG I EDMP+ G DI++NP +PS Sbjct: 574 GHKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLVPDIIINPHAIPS 633 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM I ++E L + G + D + F+ Sbjct: 634 RMTIAHLIECQLSKVSSLRGFE-------------------------------GDATPFT 662 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 + V ++ LR + G +Y+G TG + V Sbjct: 663 EVTVDSVSRLLR-----------------------EHGYQSRGFEVMYNGHTGRKLVAQV 699 Query: 1226 TVGYMYMLKLNHLVDDKM 1243 +G Y +L H+VDDK+ Sbjct: 700 FLGPTYYQRLRHMVDDKI 717 >UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVW5_9CHLO Length = 1310 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 116/399 (29%), Positives = 194/399 (48%), Gaps = 23/399 (5%) Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPER-LRGETASFDIEANGKVYVEKGRRITARH 273 QI F + + + + Q + L + F I +V V + R + Sbjct: 105 LRNHQIFFSFL-LIHNKKKKIRFQWVFLGNLPLMTKRGHFIINGAPRVIVNQIIRAAGVY 163 Query: 274 ----IRQLEKDDVKLIEVP--VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 + ++ K K I V+ I+ + V + + ++ + + L Sbjct: 164 YQQQVNKVIKKGQKQIYRTFYVDIISYRGVWLRFELDKKRQIWVCMKKTPKMPIFVFLKF 223 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 G + L + T T + L L + +++ + + Sbjct: 224 MGFSKKNILSNVRNIQPNFFKNT--KMHTRNFLFYLTQNFQLEKTFNH-------TFTYR 274 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 F + YDL +GR + N L IL+ D + + +L+D+ N + VDDID+ Sbjct: 275 KFLNPQIYDLGIMGRKRLNSKLGLR--TKKTILTPSDFLKITYRLLDLTNHQDVVDDIDN 332 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 LGNRRIR+VGE+ + QF R+ + ++E++ + + +P+++ ++EFFG Sbjct: 333 LGNRRIRTVGELLKIQFFQATFRLNKILEEKIKKTESMD----SIFTTRPMNSVLREFFG 388 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 S QLSQF+DQ NPLSE+THKRRIS LGP G+ RE AG ++R +H T++GR+CPIETPEG Sbjct: 389 SCQLSQFLDQTNPLSELTHKRRISCLGPNGIQRETAGMDIRGIHSTYFGRICPIETPEGQ 448 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 N GL+NSL++++ N GFLE+ + K+ G + ++ L Sbjct: 449 NAGLVNSLTIFSTKNADGFLESIFYKIYKGQIQKQLEPL 487 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 33/257 (12%) Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK-- 169 K I+ Q V++G +PLMT G F+ING RVIV+Q+ R+ GV++ K G+ Sbjct: 119 NKKKKIRFQWVFLGNLPLMTKRGHFIINGAPRVIVNQIIRAAGVYYQQQVNKVIKKGQKQ 178 Query: 170 --VLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL------ 221 + II YRG WL FE D K ++V + + K+P + L+ + ++ + IL Sbjct: 179 IYRTFYVDIISYRGVWLRFELDKKRQIWVCMKKTPKMPIFVFLKFMGFSKKNILSNVRNI 238 Query: 222 --------------DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 LF+ F++ + + +D+ G+ + Sbjct: 239 QPNFFKNTKMHTRNFLFYLTQNFQL-EKTFNHTFTYRKFLN-PQIYDLGIMGRKRLNSKL 296 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST------GELICAANMELSLDL 321 + + D +K+ ++ + V D + GEL+ + + L Sbjct: 297 GLRTKKTILTPSDFLKITYRLLDLTNHQDVVDDIDNLGNRRIRTVGELLKIQFFQATFRL 356 Query: 322 LAKLSQSGHKRIETLFT 338 K+ + K+ E++ + Sbjct: 357 -NKILEEKIKKTESMDS 372 >UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NYQ6_COPC7 Length = 1127 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 92/414 (22%), Positives = 142/414 (34%), Gaps = 100/414 (24%) Query: 921 PNGVSGTVI----------DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 PNG + V D + + E+ I + Q+ K E++ Sbjct: 683 PNGTNAVVAVISYTGYDMEDAMILNKSAHERGFTYGTIYKSQIIDLK-----EVRGASKS 737 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 + +AG + + P D++ + D L + Sbjct: 738 SSTPTLHFGIAGDIRLTGDNAHPC-----AEFVDKDGLPFPGVRVKPGDPLAAYIDDTTG 792 Query: 1031 AKRRKITQGD-------------DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 R +GD D L+ V V L + R GDK + RHG KGV S Sbjct: 793 RTRFVKYKGDETAYVDQVRLLGSDAGDSELQKVHVTLRIPRAPVIGDKFSSRHGQKGVCS 852 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 + P DMP+ E+G D+++NP PSRM IG ++E+ G A G +A + E Sbjct: 853 QKWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMLVESMAGKAGAMHGLAQDATPFKFTE 912 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 D A + K+ Sbjct: 913 E-------------------------------------------------DTAIDYFGKQ 923 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 LL G +Y G TG++F + G +Y +L H+V DK Sbjct: 924 LL-AAGYNYYGNEPMYSGITGQEFAADIYFGVVYYQRLRHMVLDKFQ------------- 969 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG-RTKMYKNIVD 1310 G+ + GG RFGEME AL A+G ++ LQ+ L SD + +++ Sbjct: 970 ---GRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYSTAWVCRTCGSLIS 1020 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 94/642 (14%), Positives = 190/642 (29%), Gaps = 176/642 (27%) Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM--MRPGEPPTR 378 +L L + K I +++ DR+ L+ ++M M GE Sbjct: 239 ILKALVNASDKEIFEGVVMQDYDNTFLT---------DRVELLLRSFKMYTMHTGEQCLE 289 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 + L ED + +A+G + +L ++ +++K+ + +G Sbjct: 290 YLGDKFRVVLNLPEDWTN-AAIGAWLIQKLVLVHLETPRDKFRM--LLYMLRKMYSLISG 346 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-------DLDTLMPQD 491 + D+ D ++ + G + + + + A++ +++ D Sbjct: 347 ECCADNPDSPQHQEVLLPGSLYGMIIKERMEEILNAIRATIAMDVRTGANVDFHDKKYFA 406 Query: 492 MINAKP---ISAAVKEFFGSSQLSQ--------------FMDQNNPLSEITHKRRISALG 534 + K I + + F + L ++ N I+H R + Sbjct: 407 KVLTKVNFDIGSKMSNFLATGNLVSPTGLDLQQASGFTIVAEKLNWQRYISHFR---CIH 463 Query: 535 PGGLTRERAGFEVRDVHPTHY----------------------GRVCPIETPEGPNIG-- 570 G E VR + P + GR +G IG Sbjct: 464 RGAFFAELKTTTVRKLLPEAWVAHIPNLLAAHGMTQSFATSIDGRKNLCVQLDGRVIGWA 523 Query: 571 ---LINSLSVYAQT-NEYGFLETP-------YRKVTDGVVTDEIHYLSAIEEGNYVIAQA 619 + L+ + G E P + G + + V A Sbjct: 524 RPVVAAQLATNLRIWKTEGKYEVPLDLEIGFVPESHGGQYPGLFLFSTKARFMRPVKYLA 583 Query: 620 NSNLDEEGHFVEDLVTCRSKGESSLFSRDQV-----DYMDVSTQQVVSVGASLIPFLEHD 674 N D+ G F + + + + +++ +++ +S+ A++ PF + + Sbjct: 584 NGKDDQIGSFEQVYM-------NIACTPEEIEEGVSTHVEHDPTNFLSILANMTPFSDFN 636 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 M +Q + GT A+ I Sbjct: 637 Q---------MGKQTM----------GTP-------------------------ATAIQH 652 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + + +Y L Q P V L + D Sbjct: 653 RTDN----------KLYRLQT----------GQSPIVRPS--------LHNTYGMDA--F 682 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE----- 849 G N VA + + GY+ ED++++++ + FT I + + G + Sbjct: 683 PNGTNAVVAVISYTGYDMEDAMILNKSAHERG-FTYGTIYKSQIIDLKEVRGASKSSSTP 741 Query: 850 -----ITADIPNVGEAAL---SKLDESGIVYIGAEVTGGDIL 883 I DI G+ A +D+ G+ + G V GD L Sbjct: 742 TLHFGIAGDIRLTGDNAHPCAEFVDKDGLPFPGVRVKPGDPL 783 >UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AXE5_BABBO Length = 971 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 120/647 (18%), Positives = 237/647 (36%), Gaps = 34/647 (5%) Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD---IEANGKVYV 263 TI +NY I LFF+ V ++ + L+ +++ F+ I++ K+ Sbjct: 9 TIYKTYINYILNNIYTLFFDVVKYQKKL--LKRNNYRVKVQNIKLYFNLLSIKSIDKINY 66 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVE---YIAGKVVAKDYIDESTGELICAANMELSLD 320 ++ + +K I I ++ +D + LI N L Sbjct: 67 NSYYLLSYSTMYYSFNVPLKFIFNDQSKSININYNILNIPKVDATGEILINGFNRTPVLH 126 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 L + + + + + L N L + + N + + + E + Sbjct: 127 LKSIIKHTSTVQKKRLIKNYLINLTGFNYMHVSVSQNKYVYVKLNDLSKLDLSEVIKFNS 186 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI-LSKDDIIDVMKKLIDIRNGK 439 F L E ++ +N +++ S DII V+ K I+ + K Sbjct: 187 IHKNFIKLTIFEIIEAINDKFYNDYNDNVINSFFTAYNKNCSYADIISVINKFINAVHKK 246 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPIS 499 + D N+ + S+ + N + L ++ L LD+ I Sbjct: 247 ITFINSDSFINKNVNSICDNMFNLIKKSLSTYHFTDPKKHILHVLDSKTKFSNI------ 300 Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV---RDVHPTHYG 556 +E F + + +Q N LS + +K +++ G + R V + Sbjct: 301 PLFRENFLLNPSLHYTNQLNLLSCVQNKFKLNIFGYSTSSTSTTFAIPKYLRQVQYFYLN 360 Query: 557 RVCPIETPEGPNIGLINSLSVYA--QTNEYGFLETPYRKVTDGVVTDEIH-YLSAIEEGN 613 + + T +G G++++++ Q + + +K + + D+ L++I N Sbjct: 361 FINILYTVDGEKCGILSTITTNTIEQNKKLKTVIINKQKFLNNIYLDQFSKNLNSITINN 420 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ-VDYMDVSTQQVVSVGASLIPFLE 672 Y N+ L + +F + V GE + D+ ++ + ++ LIPFL Sbjct: 421 Y-----NNLLKKSYNFKINHVEVIENGEFKIVKLDKHSSNSSLTFYNIFNITELLIPFLL 475 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 ++D R+LMG+ M QAVP + ++ V T + + S ++ G++ +I Sbjct: 476 NNDMCRSLMGSKMHTQAVPLIHSNPQYVYTKYNQITNLISNKCIISSTSGIIVLSTNYKI 535 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 I + + Y L+ Y + N P V GE G +LA Sbjct: 536 TILDDNNRYVS-------YYLSPYNIHDYNYYTRYRPVVWEGEKSNIGTILAIPSDAANC 588 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 E LG N V + + GY ED+I++++ V D T++ Sbjct: 589 EFTLGFNNFVNYSFYYGYEHEDAIVLNKNVAYNDMLTSLEFDIDDID 635 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 55/292 (18%) Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 K++L I GDK+ GRHGNKG ISKI I + PY +I+ +P+G SRMN+G Sbjct: 732 KLFLVSINNINVGDKLCGRHGNKGTISKIIEIPESPYTSEDKLPNIITSPIGAASRMNVG 791 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 Q +E ++G +I + + +++ + + K+ Sbjct: 792 QFIEGYIGNTCDIDNVRIKSPINLHSSDMYSSLYVKSVSNKINNRYVKL----------- 840 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 K A VF D +TG + + + Sbjct: 841 -------KSSQNAVSVFR-------------------------DFKTGYKLKGFTHHVIL 868 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y KL H K R + S + Q + G+++ Q+FGEMEVW+LEA+GA+Y L+EM Sbjct: 869 YFFKLMHTSKSKFRYRCSSSKLV---QYVHGESKE--QKFGEMEVWSLEAHGASYNLKEM 923 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 +K++ K+ + + + ++F L+ E++++ ++I+ ++ Sbjct: 924 SLLKTNIKFVTEKIMYDYSNL-------LSKTFTDLIAELKAVLVSIKFNNK 968 >UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 99B1 RepID=D2TET4_9VIRU Length = 1507 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 113/295 (38%), Gaps = 75/295 (25%) Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 + RHG KGV P D P +G DI++NP +PSRM IG ++E L Sbjct: 1266 SSRHGQKGVCGVTMPAADFPCTADGVAPDIIINPHAIPSRMTIGMLMEMVL--------S 1317 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 K+ + Q+ Sbjct: 1318 KVACYEGETQDGTP---------------------------------------------- 1331 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G I + L+ + G LY+G +GE E + + Y +L H+V DK HAR Sbjct: 1332 FTGNNIELIADRLETHGMQRYGNEMLYNGMSGEILESMIFIAPCYYQRLKHMVVDKSHAR 1391 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---------- 1296 + G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L +SD Sbjct: 1392 NRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKC 1451 Query: 1297 -----------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 V ++ G H +P S +L++E+ + I+ LE Sbjct: 1452 GHFAREGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLE 1506 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 159/994 (15%), Positives = 323/994 (32%), Gaps = 211/994 (21%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSYRLGEPVF------ 80 ++ Q++S+ FIE + + + + S + + + + + P Sbjct: 23 VAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNPSVNRPAIQESDGF 79 Query: 81 ----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTF 136 ++RG+TYS+ + V + I++R + + ++V+ Sbjct: 80 YKPITPHIARLRGLTYSSTVVVDV---IHDRINHTVSPPTLINRKVF------------- 123 Query: 137 VINGTERVIVSQL---HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 VI++Q+ RS + S+ + ++ DP Sbjct: 124 -----RNVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKV------------DPGGY 166 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 + + + +P T + V + + + E Sbjct: 167 FIISGNEKTLIPQT--------------KIRTNHVFIFPSKHGEKHKYTAEV-------- 204 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 + E R T+ + + V + L Sbjct: 205 ------RSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSVF-----ILFRML 253 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD-PTNDRLSALVEIYRMMRP 372 E + D++ + D + L D N A+++ Sbjct: 254 GAESTDDIINYIGNI-----------PKDTEAILRIMLDSDTKQNYSRDAIMDWVGRNVT 302 Query: 373 GEP--PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 + T+E+ E +++ SE + + I +++ Sbjct: 303 SDTTRATKESREKYIDHIITSE------------LAPHMGLVNNPETNKKKMIFIGHMIQ 350 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV-----GLVRVERAVKERLSLGDLD 485 +L+ + G+ VDD D N+RI S G + R + + +++++ Sbjct: 351 RLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPREA 410 Query: 486 TLMPQDMINAKPISAAVKEFF--GSSQLS--------------QFMDQNNPLSEITHKRR 529 T ++++ K I++ +K F G+ +S Q + + ++ + R+ Sbjct: 411 TFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRK 470 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG---- 585 I+ + RE R +HP+ +G VC +TPEG GL+++L++ + Sbjct: 471 INT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQP 526 Query: 586 ---FLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 L T + T Y+ N I +D+ + + R G Sbjct: 527 IAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHGNL 586 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 + + ++ V S +L+ L D + MQ P + +K Sbjct: 587 PFDC--SISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQN---PAVVPNK----- 636 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDA---SRIVIKVNEDEMYPGE-------------A 746 R G+++Y+D+ + + + ++ ++ E Sbjct: 637 ------------YTRMLREGIIEYIDSAEQTNMRVAIHHTDIEQDEYTHIEIHPALLTGI 684 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER--------GDVLADGP----STDLGEL 794 + + +S + ++G G VLA +T L EL Sbjct: 685 CVSQIPFCDHNQSPRIAYQAAQCKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRLEEL 744 Query: 795 ------ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 G VA M ++G+N +DS+L+++ + FT+ + + T E Sbjct: 745 LGTSVVRSGAVPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEEKGTGADIE 804 Query: 849 --EITADIP---NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 E +IP + EA SK+D+ G+ IG GD+L+GKV Q P+E Sbjct: 805 RFENPKNIPGCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKE---- 860 Query: 904 AIFGEKASDVK-DSSLRVPNGVSGTVIDVQVFTR 936 GE D K D S V V+D F++ Sbjct: 861 ---GEVRRDTKRDRS-HVLRTDEPVVVDAVFFSK 890 >UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S96_GUITH Length = 1049 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 149/388 (38%), Gaps = 66/388 (17%) Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 + I+ + A+++ K R ++ ++ QL ++ Sbjct: 712 ISIMSFTGYDVEDAIILNKSSVERGFFKTAFLRKTKIEISSFRHLTQLFSKVNHNNKEVF 771 Query: 1024 EFEKKLEAKRRKITQGDDLAPGV--------LKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 EF K +KIT + + L + K + R + GDK + RHG KG+ Sbjct: 772 EFLNKSNNNNQKITSNLKYSDNLVVVKYGLDLTLAKFLIRECRNPEIGDKFSSRHGQKGI 831 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 I P +DMP+ E G DI++ H + IG I +L + Sbjct: 832 CGFIKPQQDMPFSEKGICPDIIM---------------NPHGFPSRMTIGKTIEIILSKS 876 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 ++ G +F I Sbjct: 877 GCIS---------------------------------------GKFKDGSIFKKININTI 897 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 + L+ ++G+ +Y+G TG + G ++ +L H+V DK+H+R+TG S +T Sbjct: 898 VKSLRSFGFVSNGEDFMYNGITGNLINNQIYSGIVFYQRLKHMVKDKIHSRATGIKSKLT 957 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD----G 1311 QP+ G+++ GG RFGEME L ++GA+ + L + SD + I+ Sbjct: 958 YQPVEGRSKGGGLRFGEMERDCLISFGASELALDRLLLNSDCYEAKFDKNSGIIHTSNSN 1017 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + +P + +LL+E++S+ I L Sbjct: 1018 TNVVAVKIPYACKLLLQELQSMNIIARL 1045 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 115/731 (15%), Positives = 246/731 (33%), Gaps = 137/731 (18%) Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYT---TEQIL----DLFFEKVI--------F 230 + D +LF+RI+ ++K ++ + IL + F+ K+ + Sbjct: 81 YSIDIYSDLFIRINNKKKFINNNLIFKIPLMLKCNRCILYGKKEDFYIKINECPLDPGGY 140 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGK----VYVEKGRRITARHIRQLEKDDVKLIE 286 I ++ L+ E+L + + +G V +R T I E + Sbjct: 141 FIIKGTEKVILIQEKLVLNRIGIEKDKSGNFYSYVISSYKKRNTKSFIIIKENKIYFRNK 200 Query: 287 VPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 + +E I ++ K + E+ ++I E L L++S ++ F N Y Sbjct: 201 IFIEDIPIFIILKAFGFENNLDIIDLIGYEFESTLFYSLTES----LKIGFVNQFQSVCY 256 Query: 347 ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + + L + E + F F++E Y + + Sbjct: 257 LMQKL----------------------DIRFIETNKITF---FYNESNYQILD---HILS 288 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 ++ + + + +++KL+ +D D+ GN+R+ G++ E Sbjct: 289 HIIVNKNPVSQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKRLELSGDLVEILLED 348 Query: 467 GLVR--VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS------------ 512 L + +E +++ + I + IS ++ F + Sbjct: 349 LLHKSWIESKKFIEKKKIEVNETIYHHFIKSDFISYGIENAFITGNWKINKYGIDKNGIT 408 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 Q + + + +S + + S+ + R R++HPT + +C +TPEG + GLI Sbjct: 409 QILSRLSFMSSFSMLLKTSS----NFEKTRKSISPRNLHPTQWRFICTSDTPEGESCGLI 464 Query: 573 NSLSVYAQTNEYGFLETPYR--KVTDGVVTDEIHYLSAIEEGNYVI---AQANSNLDEEG 627 +L++ + + E Y KV + + D S NY+ N L Sbjct: 465 KNLALLSHISIQ---ENDYFLAKVCNILGVDSKLS-SIKTIKNYLNMTKIFLNQKLIGFH 520 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 F + C + + ++ S LI L ++ R Sbjct: 521 QFPSKFLFCFRNMR-------RSNLIESSVSIYWDSTMKLIWIL-----------SDKGR 562 Query: 688 QAVPT--LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR------------IV 733 P + + + + + G ++Y+D++ I Sbjct: 563 LCRPLYIIENGILKSKKKHLKLYSKKIINWNILTKFGFIEYIDSNEENNTIIADSLKAIN 622 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQ---NTC-------------INQMP-------- 769 + + E+ G +L ++ NQ NT NQ Sbjct: 623 FRSSHLEISEGNILGISASLIPFSDHNQSPRNTYQCSMGKQSASFLGFNQNSRIDITLSL 682 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 + +P+ + +L G+ G N ++ M + GY+ ED+I++++ V+ F Sbjct: 683 LIYPQKPILKTKILN---LIGAGKCPTGINTCISIMSFTGYDVEDAIILNKSSVERGFFK 739 Query: 830 TIHIQELACVS 840 T +++ Sbjct: 740 TAFLRKTKIEI 750 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 114/756 (15%), Positives = 251/756 (33%), Gaps = 142/756 (18%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSV-FPIQSYSGNSELQYVSYRLGEPVF----- 80 L+ Q++S+ K I Y L + + + I +Y+ E+++++ + F Sbjct: 12 LIWQQIESYNKLI------NYQLISILKKIENEIWNYNSFLEIKFINTSMSIGTFFEKNI 65 Query: 81 ----DVQECQIRGVTYSAPLR--VKLRLVIYEREAPEGTVKDI-------------KEQE 121 +I+ TYS + + +R+ ++ + I K+++ Sbjct: 66 GNTVTPFHSRIKDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLMLKCNRCILYGKKED 125 Query: 122 VYM--GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 Y+ E PL G F+I GTE+VI+ Q + + + SG + + +I Sbjct: 126 FYIKINECPL-DPGGYFIIKGTEKVILIQEK----LVLNRIGIEKDKSGN--FYSYVISS 178 Query: 180 RGSW--LDFEFDPKDNLFVRID-RRRKLPATIILRALNYTTE-QILDLF---FEKVIFEI 232 F ++ ++ R +P IIL+A + I+DL FE +F Sbjct: 179 YKKRNTKSFIIIKENKIYFRNKIFIEDIPIFIILKAFGFENNLDIIDLIGYEFESTLFYS 238 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY- 291 L++ V + + IR +E + + Y Sbjct: 239 LTESLKIGFV-----------------NQFQSVCYLMQKLDIRFIETNKITFFYNESNYQ 281 Query: 292 IAGKVVAKDYIDESTGELICAANMELS---LDLLAKLSQSGHKRIETLFTND-LDHGPYI 347 I +++ ++++ + ++ LL L + + N L+ + Sbjct: 282 ILDHILSHIIVNKNPVSQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKRLELSGDL 341 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 E L D + + + + ++ F S + G K N Sbjct: 342 VEILLEDLLHKSW--IESKKFIEKKKIEVNETIYHHFIKSDFISYGIENAFITGNWKIN- 398 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR-----RIRSVGEMAEN 462 ++ + ILS+ + L+ + + N R + E Sbjct: 399 KYGIDKNGITQILSRLSFMSSFSMLLKTSSNFEKTRKSISPRNLHPTQWRFICTSDTPEG 458 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDM--INAKPIS-AAVKEFFGSSQLSQFMDQN- 518 + + + + D ++ +++K S +K + +++ F++Q Sbjct: 459 ESCGLIKNLALLSHISIQENDYFLAKVCNILGVDSKLSSIKTIKNYLNMTKI--FLNQKL 516 Query: 519 --------NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC-PIETPE-GPN 568 L + RR + + + ++ + + GR+C P+ E G Sbjct: 517 IGFHQFPSKFLFCFRNMRRSNLIESSVSIYWDSTMKLIWIL-SDKGRLCRPLYIIENGIL 575 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 L +Y++ + T + I Y+ + EE N +IA + L Sbjct: 576 KSKKKHLKLYSKKIINWNILTKF---------GFIEYIDSNEENNTIIADS---LKAINF 623 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 + ++++S ++ + ASLIPF +H+ + R +M +Q Sbjct: 624 --------------------RSSHLEISEGNILGISASLIPFSDHNQSPRNTYQCSMGKQ 663 Query: 689 AVP----------------TLRADKPLVGTGMERAV 708 + + KP++ T + + Sbjct: 664 SASFLGFNQNSRIDITLSLLIYPQKPILKTKILNLI 699 >UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=Fungi RepID=Q2I5U8_9FUNG Length = 1080 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 114/596 (19%), Positives = 212/596 (35%), Gaps = 112/596 (18%) Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM---INAKPISAAVKEFF 506 +R+ G + + FR ++ + V + L+ P ++ IN+ I+ ++ Sbjct: 1 KKRLDLAGPLLASLFRTFFQKLTKDVGRYFT-NCLERSRPFNLNMAINSNTITNGLRYAL 59 Query: 507 GSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 + SQ +++ S ++H RR++ + RE + R +H T Sbjct: 60 ATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNT----PIGREGKLAKPRQLHNT 115 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN 613 H+G VCP ETPEG GL+ +L++ + + G P + T+ + +S G Sbjct: 116 HWGMVCPAETPEGQACGLVKNLALMSIIS-VGSASEPIHEFLSEWTTENLEEISPSTIGP 174 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 N + LV +L +D +VS + I + + Sbjct: 175 NTKVFVNGAWIGIHREPDSLVKTLK----TLRRATDID-SEVSVVHDIRENELRI-YTDP 228 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR-- 731 R L N +Q V L+ + ++ E A+ G+V+Y+D Sbjct: 229 GRICRPLFVVNENQQLV--LKKEH-ILKLSEEDEDAI--WGWEKLLINGIVEYLDTEEEE 283 Query: 732 -IVIKVNEDEMYPGEAGI-----------------------------------------D 749 ++I ++ D++ + Sbjct: 284 TVMISMSPDDLAEARGALIFDKSLDRDRTARLKARKPGDYCKTWTHCEIHPAMILGICAS 343 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------------TDL 791 I + +S +NT + M ++G + + D + Sbjct: 344 IIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQLRMDTLANILYYPQKPLVTTRNMQYLRF 403 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP---- 847 EL GQN VA ++GYN EDS+++S+ + F +I+ + + T Sbjct: 404 RELPAGQNAIVAIAAYSGYNQEDSLIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEF 463 Query: 848 EEITAD-IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 E T + + + + KL++ G V G V G DI++GK P +L Sbjct: 464 ERPTRETTLKLRQGSYEKLEDDGFVAPGTRVNGDDIIIGKTAPLPMD----HSELGT--- 516 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDK---RALEIEEMQLKQAKK 958 KD S + + +G V V V T DG + K R+ + ++ K A + Sbjct: 517 -RTTQTKKDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTRVPQIGDKFASR 571 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 115/313 (36%), Gaps = 62/313 (19%) Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 ++ R V+ +K+ + + ++ ++ + +L+ G + ++ D + Sbjct: 443 IYYRSYVDAEKKTGFTQLEEFERPTRETTLKLR---QGSYEKLEDDGFVAPGTRVNGDDI 499 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 + L + E + Q + E + T GD K VK+ Sbjct: 500 IIGKTAPLPMDHSELGTRTTQTKKDVSTGLKSSENGIVDHVMVTTNGD-----GYKFVKI 554 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 + R Q GDK A RHG KG + EDMP+ G D+++NP +PSRM IG + Sbjct: 555 RVRSTRVPQIGDKFASRHGQKGTVGMTYRQEDMPFTAEGLTPDLIINPHAIPSRMTIGHL 614 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 +E LG + G + D + F+D V ++ Sbjct: 615 VECLLGKVSSLTGSE-------------------------------GDATPFTDVTVQQI 643 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 ++ LR G +Y+G TG++ + +G Y Sbjct: 644 SDLLR-----------------------ECGYQQRGFEVMYNGHTGKKLSAQIFLGPTYY 680 Query: 1233 LKLNHLVDDKMHA 1245 +L H+VDDK+H Sbjct: 681 QRLKHMVDDKIHC 693 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 19/26 (73%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRF 1270 +RS G ++T+QP+ G+++ GG RF Sbjct: 1055 SRSRGPLQILTRQPVEGRSRDGGLRF 1080 >UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrella patens subsp. patens RepID=A9RIU1_PHYPA Length = 472 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 98/424 (23%), Positives = 158/424 (37%), Gaps = 56/424 (13%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G + + + + G ++ L + K + E+ + F V V G Sbjct: 94 GVNVVIAILSYFGYNQEDSLLFNKSSIDKGLFSSIEYEVVEIIENKFMNEILVYVPDGDI 153 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 D + + + D + + E+ ++ K ++ G Sbjct: 154 LRDNDGII---LVGQQVKDGDTIAAKLVITEKKQSIEKIVLKSFVSRWVDKVTKHTSVEG 210 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 KIV+V + + R G K RH KG+I I ED+ + ++ D+++NP +PS Sbjct: 211 -NKIVRVRILLYRFPIVGHKFTSRHSQKGIIGAILSQEDLSFTKDEIAPDLIINPHVIPS 269 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM +G +LE M + D NA K RE Sbjct: 270 RMTMGHLLEMV--MYKIYVLDSNNARDPMLSSKPKSRE---------------------- 305 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 I VF+ A + ++ KL + ++Y G T E V Sbjct: 306 -------------SSCIDATVFNRAHRSFEADIAKL------CKEKMYCGATRLPIEAIV 346 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G Y L H DK H+ S G +T+QP+ G+++ GG RFGEME L A+G A Sbjct: 347 ATGICYYHVLRHQARDKAHSISKGVIQSLTKQPVEGRSRKGGLRFGEMEKDYLIAHGVAS 406 Query: 1286 TLQEMLTVKSD--------DVNGRTKMYKNI-VDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 L E L SD D + +I +G + E +P SF +L +E+ I Sbjct: 407 MLFEKLKNTSDLYEIWIYHDCSMICSSSPSINCNGRNTKEHRLPYSFKLLAQELSIANIR 466 Query: 1337 IELE 1340 + L+ Sbjct: 467 VGLK 470 Score = 76.3 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 14/139 (10%) Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 G N+ +A + + GYN EDS+L ++ + + F++I + + + EI +P+ Sbjct: 94 GVNVVIAILSYFGYNQEDSLLFNKSSIDKGLFSSIEYEVVEIIENKF---MNEILVYVPD 150 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV-KD 915 L D GI+ +G +V GD + K+ E + + E+ +L++ V K Sbjct: 151 --GDILR--DNDGIILVGQQVKDGDTIAAKLV-ITEKKQSIEKIVLKSFVSRWVDKVTKH 205 Query: 916 SSLRVPNGVSGTVIDVQVF 934 +S+ ++ V++ Sbjct: 206 TSV-----EGNKIVRVRIL 219 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 15/85 (17%) Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP---------------T 692 +Q ++++ + + AS+ PF+ + ++R + + M +QA+P Sbjct: 14 NQHTHIEIHPSFMFELSASMTPFVNFNQSSRIVFQSAMSKQAMPLALHIMTNMISDSKIL 73 Query: 693 LRADKPLVGTGMERAVAVDSGVTAV 717 A KP+ T + + V +GV V Sbjct: 74 TYAQKPICTTTISNTIKVYNGVNVV 98 >UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYC9_9BACE Length = 1237 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 180/928 (19%), Positives = 334/928 (35%), Gaps = 120/928 (12%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD-PEGQYGLEAAFRSVFPIQS 61 +SY RI K + +D+ LL Q +S+QK++ + L R + +Q Sbjct: 2 FSYDPSNRILKVQKLAEEEVDL-GLLEYQKESYQKYLTETIYSDMEYLLQVMREL--LQV 58 Query: 62 YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++E + G E + + +Y P+ K + + E Sbjct: 59 SQVDAEFRVGDLYCGNYK---NEVKKKSPSY-YPVYAKFTI-----------DGAVFPNE 103 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V + IP M ++G NG RV++ Q+ + V + +DK + Sbjct: 104 VEVFRIPAMDEDGILNFNGDRRVLLMQMVAAERVSYAADKQTVSITTPRRN--------- 154 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALN------------YTTEQILDLFFEKVI 229 + FD ++ ++ R K+P ++RA N +T+ IL F Sbjct: 155 --ISLMFDGTKDVTIKYGPRNKIPMHKLIRAYNAKEKVYDDPSKLFTSAYILSAFATDSA 212 Query: 230 FEIR--DNKLQMELVPERLRGET----ASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 +++L + G+ + D RI +R + E Sbjct: 213 ATDEAIEDELDKLNIYATYSGDDYALGKTRDALNEALSLDRARGRILSRPVGPFEAGRRV 272 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 EV + YI + + Y+ + L+ +L+ +G L + Sbjct: 273 DDEV-LHYIHLHCINEIYVKAIPDVV----GYTLTQELVISFVPAGTHNNSRLQEALPEF 327 Query: 344 GPYI--------------SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL----- 384 Y ETL + RPG P R E Sbjct: 328 ADYSAIPQDSQVCIFMSSKETLTKEDVQFLYDVGAHHVDCKRPGSAPIRATFEEEVIGNY 387 Query: 385 ------FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 R+ V N R +++ D++ + I+ Sbjct: 388 TVRLGDIYGHNIPAGRFHDEWV-CFYNNPKFERTDMDHLNT---HDLMALYSLCAFIKKN 443 Query: 439 --KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 + + D D +++ + E+ N R L + +S L+ + Sbjct: 444 PEENFLLDKDFGLLKKVLAANELFSNAMREVLPDFVKHYSVSISRAISQNLLTEGKFAG- 502 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 +S K++ + NP++ + + L T E ++R + YG Sbjct: 503 -LSDMWKKYLWDKNYLDIANTINPIAVVAQ---TNHLVSDLHTSEIPE-KMRLLSMGFYG 557 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV------VTDEIHYLSAIE 610 R+CP ETP G +G+ N+ ++ A+ + G L TPYR+V ++ EI Y+ A E Sbjct: 558 RICPYETPSGKKLGITNTKAIGARIKD-GILTTPYRRVLKNSNGEIESISQEITYMDAQE 616 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD-----YMDVSTQQVVSVGA 665 E + I S + ++ V R ++ + + VD Y++ +Q +S A Sbjct: 617 EAQFRIGDLLSLKKDGYRYLNTKVMARVPAPNNQVTVESVDAYTLDYVNAYCEQHLSPTA 676 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV-AKRGGVV 724 +LIPF DDA R NM +Q++ + P V T M R S + AK+ G V Sbjct: 677 ALIPFAGSDDAVRVTYATNMLKQSILVQGSQIPRVFTSMYRRCFNHSNTYVIRAKKDGWV 736 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 + + ++ + ++ I+ + + + +NQ+ V G+ ++GDVL Sbjct: 737 EQIPMGKLQLTYDD-------GTIEDIEICETSVTNQSVNFLNFH-VKEGDHFKKGDVLV 788 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 D G + G N+ A++ +GYN+ED++ +SE ++F +I + R + Sbjct: 789 DSAIAREGIYSPGVNLFAAYLA-DGYNYEDAVELSEYAA--NQFISISTET--ITHRMHR 843 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVY 872 E I E + E+G++ Sbjct: 844 QSNESIRV----GTEYCYRFIPENGVIA 867 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 90/254 (35%), Positives = 123/254 (48%), Gaps = 18/254 (7%) Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R++ GDKMAGRH NKG S I +MP NG +DI+LNP GVPSRMNIGQ Sbjct: 913 LLSFNRLRTGDKMAGRHSNKGTASIIRKNSEMPCFMNGRQLDILLNPCGVPSRMNIGQNF 972 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 E +LG A + + + ++ ++ +DL + K S + Sbjct: 973 EAYLGFIAYLLDVYVESDPFNGATKGDIKLLMRYVWDLANNENAKSVCSNYPMLPSTLHE 1032 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 + +R + I++ G G L++ TG+ E PVT G YML Sbjct: 1033 QAIR-------------RHEAIRDW--AGCFNPDGTAYLWNPATGKCLENPVTFGVPYML 1077 Query: 1234 KLNHLVDDKMHARS---TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 KL H V+ K HAR+ YS +++QP G A+ GGQ+ GEME+ AL AYGA L E Sbjct: 1078 KLEHEVNHKFHARAGMLEEDYSQISKQPTEGSARGGGQKMGEMELCALAAYGATDFLYET 1137 Query: 1291 LTVKSDDVNGRTKM 1304 SD+V R Sbjct: 1138 CNSMSDNVLDRVNT 1151 >UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QA33_LEIMA Length = 1616 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 89/420 (21%), Positives = 144/420 (34%), Gaps = 102/420 (24%) Query: 973 SRIRAVLVAGGVEAEK----LDKLPRDRWLEL-GLTDEEKQNQLEQLAEQYDELKH---- 1023 R A L A G+ ++ LD DR + GL D + E+ D + Sbjct: 1239 ERFTAELEANGLPPKRANASLDAFSFDRDHKYPGLRDNNDVYCCAKRVERVDPFTNKAVY 1298 Query: 1024 EFEKKLEAKRRKITQGDD-----------LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 E+ + K R +G+D P ++ ++ + R GDK + RHG Sbjct: 1299 EYTRHHATKWRHFDKGEDAWVQQVIPLVYSGPDPTSVLMIF-RIPRPPTVGDKFSSRHGQ 1357 Query: 1073 KGVISKINPIEDMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 KG + D+P+ +G D+++NP PSRM +G +LE G I+ Sbjct: 1358 KGTLPLHIRSHDLPFATASGITPDVIINPHAFPSRMTVGMVLEIMTAKVGAIEGRFID-- 1415 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 +T Sbjct: 1416 -----------------------------------------------NSAWSTVDEQPRV 1428 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG-- 1249 I E L G+ L DG +GE+ + V +G +L H+V DK AR+ Sbjct: 1429 AELIGEALVKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDA 1488 Query: 1250 -SYSLVTQ--QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG------ 1300 +Y VT+ QP+ G+ + GG R GEME L ++G + + + L SD Sbjct: 1489 HTYRAVTKTGQPVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRC 1548 Query: 1301 -----------------RTKMYKNI---VDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 RT + + +P+ + E+ S+GI + L+ Sbjct: 1549 GSLLSLYERHATEYGTWRTCRFCGAGADESTDSIAMVEIPQVLRLWAAELTSIGIRVVLK 1608 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 57/373 (15%), Positives = 116/373 (31%), Gaps = 67/373 (17%) Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 +S + N R + G + EVR YG +C +++P+G Sbjct: 853 TSGWVVMAEHLNFYRFFEQLR---CVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGE 909 Query: 568 NIGLIN--SLSVYAQTNEYGFLETPYRKVTDGVV--TDEIHYLSAIEEGNYVIAQANSNL 623 + G++N S+S + + + R++ V LS + + Sbjct: 910 DCGVLNHLSVSTISSNSPDAAMTAQLREIVRKAVPGVRSRATLSTVVDQLCETVPVWMEG 969 Query: 624 DEEGHF-VEDLVTC--RSKGESSLFSRDQVDY------MDVSTQQVVSVGASLIPFLEHD 674 + G+ D V + +L R QV D S + V + P + Sbjct: 970 ELLGYLSPADAVEAAATLRERKALTLRSQVHVTGIVRRKDASPLHTLEVVY-VAP--KSK 1026 Query: 675 DANRALMGANMQRQAVPTLRADK-----------PLVGTGMERAVAVD------------ 711 D + + R P R + PLV G +D Sbjct: 1027 DPAGLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIAAVPSDPLDAV 1086 Query: 712 ------------SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL--TKYT 757 +G ++ + + + + + + + +G + L K Sbjct: 1087 VQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRKEA 1146 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 + + C + R + D D ++ LG N +A + + GY+ +D+++ Sbjct: 1147 KLFRTYC--------PQRYISRTLPM-DYYGLD--DVNLGVNAVIAILAYTGYDMDDAVI 1195 Query: 818 VSERVVQEDRFTT 830 ++ Q T Sbjct: 1196 INSTAAQRGMLTA 1208 >UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyanobacteria RepID=Q5W438_OSCAG Length = 220 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 102/218 (46%), Positives = 129/218 (59%), Gaps = 27/218 (12%) Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 +A + + D EG + D+V R + E + + QVDY VS Q+VSV SLIPFLEHDD Sbjct: 3 VAPGDISTDAEGTILGDIVPVRYRQEFTTTTPMQVDYAAVSPVQIVSVATSLIPFLEHDD 62 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK 735 ANRALMG+NMQRQAVP LR ++PLVGTG+E A DSG+ V++ G + Y+D SRI++K Sbjct: 63 ANRALMGSNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRMDGEISYIDGSRIIVK 122 Query: 736 ---VNEDEMYPGE------------------------AGIDIYNLTKYTRSNQNTCINQM 768 V+ D E AG Y L KY RSNQ+TC+NQ Sbjct: 123 SLTVDADSNSSEESFLIREYDDLDLKTKQPSVWKQKYAGYIEYELQKYQRSNQDTCLNQR 182 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 P V G+ V G VLADG ST+ ELALG N+ V +MP Sbjct: 183 PLVYEGDQVVAGQVLADGSSTEGAELALGHNILVTYMP 220 >UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 6 RepID=RPB2_IIV6 Length = 1193 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 126/315 (40%), Gaps = 63/315 (20%) Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 + + + K+ +A ++R + GDK KG + I DMP+ E+G+ D+++NP Sbjct: 921 SKKGILMFKIVIAQQKRPEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHC 980 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 +PSRM I QI+ + +G + D S Sbjct: 981 LPSRMTINQIMASIMGKTCCAKNETFG------------------------------DAS 1010 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 F + + + + + + + L+ +G + G G++ Sbjct: 1011 PFQESSLEKPQDKIHA----------------LCKELEECGYNYNGTETMMCGWNGKKLR 1054 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTG--SYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + G +Y +L H+V DK+ +R++ +T+QPL G+A GG R GEME + Sbjct: 1055 AEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEKDCMLV 1114 Query: 1281 YGAAYTLQEMLTVKSDD---------------VNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 +G + L E + +SD V + + + +G ++ P + + Sbjct: 1115 HGISKFLHEKMFDQSDKFIINLCVPCKSYFKVVKTQNGFFCSGCNGIDIVKFNCPFAAKL 1174 Query: 1326 LLKEIRSLGINIELE 1340 +E+ ++G +E + Sbjct: 1175 FFQELTAMGQKLEFK 1189 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 111/703 (15%), Positives = 229/703 (32%), Gaps = 127/703 (18%) Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + L + +++ L ++ + Y+ + + + E+ Sbjct: 282 VFRVLKVATIDKLKFLIGDEEELDKYLIKIVEETSDGGIFDDMEIEISQEDDFNEENEES 341 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 E F +D + V +++L ++ +L + I+ K + Sbjct: 342 TEKKKITQFIEQDMFPHLGVSSTHEEKAILLGKMVRKLLLVNETSINANKFAQRANDETN 401 Query: 441 EV----------DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL---SLGDLDTL 487 + +D D+ N+R+ + G + FR+ R ++ +L + ++D + Sbjct: 402 KTNKTNKMYYTQEDRDNYSNKRVETAGVLCFELFRMLYKRFIKSNINQLEKRNRVEMDVI 461 Query: 488 MPQDMINAKPISAAVKEFFG-------SSQLSQF-MDQNNPLSEITHKRRISALGPGGLT 539 I + +G + ++Q ++ + + ++ RR + Sbjct: 462 SKNAFITTGLHFSFSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRRFVI----PMG 517 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 +E ++R +HP+ CP ETPEG +G+ + S+ A+ + + T + + + Sbjct: 518 KEGKNTKIRQIHPSSIFFACPSETPEGQFVGITLNFSMLAEVS----IRTSSVVIKEIIE 573 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 + E +L+E F+ L G + QQ Sbjct: 574 ASHQAFKHVHE----------ISLEENKQFLSKLSIIFVNGGICGLTSK--------PQQ 615 Query: 660 VVS--------------VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 ++S V A IP L+ + ++ R P L Sbjct: 616 LLSDVRDLKLKHCLKYDVSAVFIPELKE-----VHISSDAGRFIRPVLNLQS----IKTN 666 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDA-----SRIVIKVNEDEMYPGEAGIDIYN-------- 752 V +S G V Y DA S+I I + + YP + Sbjct: 667 GNVMWNSFQN--CLENGHVVYKDAYEIEQSQIAINLQDLSRYPTVYDSMEIHASCMLGVM 724 Query: 753 -----LTKYTRSNQNTCINQMPCVSLG----------------EPVERGDVLADGPSTD- 790 ++T+S + + M ++G + V+R V + Sbjct: 725 AAQIPFAEHTQSPRLCYQSSMAKQAIGNIPSHHVKSDNTTRVMDYVQRPLVTTQIAEMNR 784 Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 850 + G N VA + G+N EDSI++++ + F + + + R + + Sbjct: 785 FNDFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIVEERKIGVNEKIC 844 Query: 851 TADIPNVGEAALSKLDES------GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 S L+++ G+V + + V D+LVGKV K T +E Sbjct: 845 MPVASVRRMNNYSLLEDNPESPYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQET---- 900 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 D S V G V + ++ G+ K + Sbjct: 901 ----------DHSTIVSISEEGKVDRIIRTSKKGILMFKIVIA 933 Score = 44.7 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 37/125 (29%) Query: 63 SGNSELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 S L++ + + +P E + + +TY + + V + + E Sbjct: 90 SEKIMLKFENVFVAKPTITNDDTTVRPLYPAEARQKMITYDSFVFVDVLEYVLRDEEEIL 149 Query: 113 TVKDIKEQEVYMGEIPLMTDNGT------------------------FVINGTERVIVSQ 148 K ++ V + +IP+M + T F+ING ERV++ Q Sbjct: 150 VNKHLR---VQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERVLIGQ 206 Query: 149 LHRSP 153 L + Sbjct: 207 LRNAY 211 >UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative n=1 Tax=Schistosoma mansoni RepID=C4Q6P1_SCHMA Length = 1155 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 77/345 (22%), Positives = 119/345 (34%), Gaps = 100/345 (28%) Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY-DENGTPVDIVLNPLGV 1103 G + L + R+ GDK + RHG KG+ S + E+MP+ NG D++ NP G Sbjct: 855 GSWSCATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGF 914 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 P+RM +G ++E G +A G+ I+A Q E Sbjct: 915 PTRMTMGMMIEFLAGKSAALTGNLIDATPFQWSE-------------------------- 948 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 D + ++L G + G TG Q E Sbjct: 949 ------------------------DSPPYEDYCQILTDCGFNHWGTETMMSGSTGRQLEA 984 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + VG +Y +L H+V DK R+ G + + +QP+ G+ GG R GEME L ++G Sbjct: 985 QIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSHGL 1044 Query: 1284 AYTLQEMLTVKSDD--------------------------------------VNGRTKMY 1305 ++LQ+ L + D V G + Sbjct: 1045 VFSLQDRLVDSNCDKVKMLACSKCGGLTHSDLARNITNTSVNQITSNNSSSFVPGTNRWC 1104 Query: 1306 KNIVDG-----------NHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + D N + SF L E+ L + L Sbjct: 1105 CRLCDSDSSDCVSRDRDNSLKYVKVSASFRYLTYELACLNVKTRL 1149 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 126/755 (16%), Positives = 239/755 (31%), Gaps = 113/755 (14%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEANGK 260 LP ++ RA N ++ + F+ + E V L ++ + + Sbjct: 100 LPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRS 159 Query: 261 VYVEKGRRITARHI--RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + ++G T I R + +D+ I + + G+ ++ + + + +S Sbjct: 160 TFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRVS 219 Query: 319 LDLLAK-LSQSGHKRIETLFTN-DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 L K I LF + + I L+ D + + AL + Sbjct: 220 FKSLYKTFGNVRTCNISFLFLKFHIRNAMRILIRLKDDEYSSQTRALCYLG--------- 270 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 LF DR G+ + S + + ++KKL Sbjct: 271 ------GLFRKRMNVPDRLSDEEAGKFLLSE--YIAIHLSSFLDKYHLLCFMIKKLHAFV 322 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI--- 493 +G + D+ + + + R ++ + VKE++ L + + Sbjct: 323 SGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQVLLKSRKQNVRISLSLFH 382 Query: 494 -----NAKPISAAVKEFFGSSQL---------SQFMDQNNPLSE----ITHKR---RISA 532 A +S A+ + L +Q Q+ LS + R + A Sbjct: 383 QALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFRA 442 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + G E VR + P +G CP+ TP+G GL+N L+ + ETP + Sbjct: 443 VHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAEPVE----AVCETPKQ 498 Query: 593 KVTDGVVT-DEIHYLSAIEEGNYVIA----QANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 V + + H L IE + Q + +G + L T +L R Sbjct: 499 SVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRLALELR 558 Query: 648 D-QVDYMDVSTQQVVSVGASLIPFLEHDDANRALM----GANMQRQAVPTLRADKP---- 698 + +VD + + + L+P + L G+ + R Sbjct: 559 NSKVDPNCKNIPHTMEIT--LVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNSAGKD 616 Query: 699 ---LVGT-------------GMERAVAVDSGVTAVAKRG------GVVQYVDASRIVIKV 736 +GT + +D +A G++ Y D ++ + Sbjct: 617 VIEWIGTFEQVYLNISVKEEELSERSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPRNM 676 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCIN---QMPCVSLGEPVERGDVLADGPSTDLGE 793 + +M G Y RS+ Q P V V+ D Sbjct: 677 YQCQMAKQTMGHSCYTWR--NRSDAKAYRLFTPQSPLVRTKMYVK--------YDVDH-- 724 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQED-----RFTTIHIQELACVSRDTKLGPE 848 LG N VA M + GY+ ED++++++ + + I + + P Sbjct: 725 YPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNPF 784 Query: 849 EITADIPN---VGEAALSKLDESGIVYIGAEVTGG 880 + + + GE LD G +GA + G Sbjct: 785 QKKRLVTSEYYFGEKPDKGLDLDGFPPVGARLEPG 819 >UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_STIHE Length = 1080 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 82/202 (40%), Positives = 124/202 (61%), Gaps = 3/202 (1%) Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y+L Y RSNQ+T + P V GE V+ GD+L+D S+ GE ++GQN+ +A++PW G Sbjct: 13 EYSLQTYQRSNQDTSMLHRPVVKEGEWVQAGDLLSDCASSIGGEFSIGQNILIAYLPWEG 72 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA-LSKLDES 868 YN+ED+IL+SER+V +D +T+IHI+ + G E+IT DI + + L+ LD++ Sbjct: 73 YNYEDAILISERLVYDDLYTSIHIERYDISTEKNPYGIEKITKDIVLLKDTTELNHLDKN 132 Query: 869 GIVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEKA-SDVKDSSLRVPNGVSG 926 GI +GA + GDILVGK+TP + + ++ +L I G+K ++DSSLRVP G+ Sbjct: 133 GIAQLGAWLKEGDILVGKITPTESKKEVARYVQLYNDILGKKINYAIRDSSLRVPRGLEA 192 Query: 927 TVIDVQVFTRDGVEKDKRALEI 948 VI V+ F E +I Sbjct: 193 KVIRVKTFPERKNETKNWENKI 214 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 115/234 (49%), Gaps = 46/234 (19%) Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 FEKK +A L + V +YLA KR++Q GDKMAGRHGNKG+IS+I P Sbjct: 403 SRFEKKRDASNF-------LKSSCISSVHIYLAEKRKVQVGDKMAGRHGNKGIISQILPR 455 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 +DMPY +GTP+D+ LNPLGVPSRMN+GQI E LG+A K +G++ + Sbjct: 456 QDMPYLPDGTPIDMALNPLGVPSRMNVGQIYECLLGLAGKHLGEQYRIQPFDEA------ 509 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 G + + S + L Sbjct: 510 --------FGPEASRSFVFSKLYSAKTKTGQS-------------------------WLF 536 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 G+++L+DGRTG F++ +T GY YM+KL HLVD+K+H + L T+ Sbjct: 537 QPTNPGKLKLFDGRTGNCFDQAITTGYSYMIKLVHLVDEKIHCLTVDHEVLTTK 590 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 50/96 (52%), Positives = 72/96 (75%), Gaps = 1/96 (1%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 +RS+G YSL+TQQPL G+++ GGQR GEMEVWA+EAYGAA+TL E+LT+KSDDV GR + Sbjct: 969 SRSSGPYSLITQQPLKGRSKHGGQRLGEMEVWAIEAYGAAFTLLELLTIKSDDVTGRLTI 1028 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + ++ + G P SF VL+ E+++L ++I + Sbjct: 1029 WDYVL-YKKPLYIGTPASFKVLICELQALCLDIGIY 1063 >UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment) n=2 Tax=Gammaproteobacteria RepID=A6BAY3_VIBPA Length = 285 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 169/226 (74%), Positives = 199/226 (88%) Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 L+VRIDRRRKLPA+IILRAL +TE+ILD+FFEKV FE++D L MELVP+RLRGETASF Sbjct: 1 LYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKDQTLLMELVPDRLRGETASF 60 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 DIE+NGKVYVE+GRR+TARHIRQLEKD V IEVPVEYI GKV +KDYI+E+TGE+I A Sbjct: 61 DIESNGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKDYINEATGEIIVNA 120 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 N E+SL+ LA LSQ+GHK +E LFTNDLDHGP++SETLR+D T DR+SALVEIYRMMRPG Sbjct: 121 NQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRISALVEIYRMMRPG 180 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 EPPT+EAAE+LFE+LFFSE+RYDLS VGRMKFN S+ RE+ + G Sbjct: 181 EPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQGT 226 >UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella erythropus RepID=Q1L6V8_9TRAC Length = 593 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 70/307 (22%), Positives = 119/307 (38%), Gaps = 71/307 (23%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V V L R Q GDK + HG KGV+ + ED+ + + G D+++NP Sbjct: 341 VNVRLRESRCPQVGDKFSSMHGQKGVVGMMLSQEDLLFTQQGIVPDVIINP--------- 391 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 H + + + + +++ + + Sbjct: 392 ------HAFPSRQTLAQMLESLVGKTAAM------------------------------- 414 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 G+ + F + ++ + L GQ R+Y G TG T G Sbjct: 415 ---------GLCLGDTPFTHLRAEQLAQKLAKRGFQKWGQDRVYSGCTGRMTGAMATFGL 465 Query: 1230 MYMLKLNHLVDDKMHARS-TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 + +LNHL DKM R G +T QP+ + + GG +FGEME L A+GA+ T+Q Sbjct: 466 TFYQRLNHLSRDKMKCRGGNGPVHPLTHQPVKDRRRQGGTKFGEMERDCLVAHGASATVQ 525 Query: 1289 EMLTVKSD-DVNGRTKMYKNIVDGNHQMEPG--------------MPESFNVLLKEIRSL 1333 E L + SD + + N Q +PG MP + +L E++++ Sbjct: 526 ERLFLVSDKSLVHVCANCCRLASFNSQQQPGCLFCKRXQRPVAVEMPYACKLLRMELQAM 585 Query: 1334 GINIELE 1340 G+++ Z Sbjct: 586 GVDMRFZ 592 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 21/174 (12%) Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR--SNQNTCINQMPCVSLG 774 + V+ ++D + +V G+ I +Y +R + Q P V Sbjct: 151 LGLSASVIPFLDHNHS-SRVTHQAQKHGKQAIGVYACDNLSRMEPTAHLYYPQKPLVH-- 207 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 LA + L G N VA + G+N EDS++V++ V F + H Sbjct: 208 ------SWLAQHLTCPX--LTNGTNCVVAVASYGGFNQEDSLIVNQASVDRGLFRSTHFF 259 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 D+K + ++ G+ YIGA++T GD+++G++ Sbjct: 260 VKKASL-DSKSSQHFGKSSDSASLDSD-------GLPYIGAKMTAGDVVIGRMA 305 >UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO2_MIMIV Length = 1196 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 139/399 (34%), Gaps = 89/399 (22%) Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 + L ++++ V+ G V ++ P R ++EKQ + Sbjct: 855 NKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNPKPTAR-------EDEKQYKDAS 907 Query: 1014 LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 Y L K+ + I+K+ + +R GDK + R G K Sbjct: 908 SI--YKSLIPGAVDKVITEVNN---------DGYPIIKMRIRSERIPNVGDKFSSRAGQK 956 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 G I DM + ++G DI++NP +P RM I G I +L Sbjct: 957 GTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTI---------------GQLIECLLG 1001 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 + V KG+ F Sbjct: 1002 KLCAV---------------------------------------KGVYGDATPFTSVDLN 1022 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 I + L G +Y+G G++ + +G Y +L +V DK H+R+ G L Sbjct: 1023 AINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGPTQL 1082 Query: 1254 VTQQPLGGKAQFGGQRFG-EMEVWALEAYGAAYTLQEMLTVKSD-------DVNG----- 1300 +T+Q G+++ GG R G EME AL A+G A L+E SD D G Sbjct: 1083 LTRQAPEGRSRDGGLRIGFEMERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHK 1142 Query: 1301 ----RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 + + + +P +F +LL+E+ S+ I Sbjct: 1143 VPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQELASINI 1181 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 130/795 (16%), Positives = 259/795 (32%), Gaps = 122/795 (15%) Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI------EVPVEYIAGKVVAKDYIDES 305 F + + KV + I + + ++D L+ +P G + Sbjct: 175 YFIVNGSEKVVLSVESMIPRKPVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKR 234 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTN--DLDHGPYISETLRV------DPTN 357 +I + + + + G + E + + D+ + L + P+ Sbjct: 235 DNSIILSIPHFKEVSIFTFIRALGIETDEDIVDSILDVKKEKDLLNLLSICMNSSNTPSV 294 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL-LREEIEG 416 + AL + ++ + T E E RY + + + E Sbjct: 295 TKEEALEIMANQIKSTKTFTDTNPEVKAEQR----RRYLDKIMTQFVLPHITSGTGDPEI 350 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGE-------VDDIDHLGNRRIRSVGEMAENQFRVGLV 469 I I ++ KL+ DD D + N+RI G + F+ Sbjct: 351 DKIYKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYD 410 Query: 470 RVERAVKERLSLGDLDTLMPQDM---INAKPISAAVKEFFGSSQ--------LSQFMDQN 518 ++ + ++D P ++ I I +++ + LSQ +++ Sbjct: 411 KMLNDCNKIFRTKNIDDKKPPNIIPHIKPNSIEQGLRQALSTGNFGSQSRKGLSQMLNRM 470 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG-PNIGLINSLSV 577 N L +++ RR+ + P R +H T YG +CP+E+PEG P GL+ ++++ Sbjct: 471 NHLHSLSYMRRV--ITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAM 528 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN----LDEEGHFVEDL 633 + P + + + YV N N DL Sbjct: 529 MEGITINMNSQIPIIESYLIGKITTLESANKKRLHQYVKVFLNGNWLGVTRNIIKIHNDL 588 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI-PFLEHDDANRALMGANMQRQAVPT 692 R +GE S V + + + G LI P+L D N + + + Sbjct: 589 RAMRFRGELSRM-VGLVLNYKTAEFHIYTDGGRLIRPYLTVTDNK-----LNFKPEMLDE 642 Query: 693 LRADKPLVG---TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK-------------- 735 + + + + +E + +A +Q DA+RI+ K Sbjct: 643 VNSWEEFLAKFPEVIEYVDKEEEQNIMLAVFPQYIQ--DANRIMSKKPINSRDQLNKINR 700 Query: 736 --VNEDEMYPGEAGIDI------------YNLTKYTRSNQNTCINQMPCVSLGEPV---- 777 +D +Y +I + +S + ++G + Sbjct: 701 TNRYDDNVYVRYTHCEIHPCMILGLISSNIPFPDHNQSPRGIFQYNQARQAMGLYISDYR 760 Query: 778 ERGDV----------LADGPSTDLG---ELALGQNMRVAFMPWNG-YNFEDSILVSERVV 823 ER D+ L ++ G+N VA + G N EDS+++++ + Sbjct: 761 ERTDISYILYHPQIPLVTSRASKYTGTHIFPAGENSIVAIASYTGLMNQEDSLVINDSAI 820 Query: 824 QEDRFTTIHIQELACVSRD------TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 Q+ +++ + + T + + + N+ +A KL E G + + Sbjct: 821 QKGYMRAQALKKYMEIIKKNPASSQTSIFMKPDRNKVDNLRDANYDKLSEEGYAKVETVI 880 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV-FTR 936 GD+++G V PK + E KD+S + + G V V Sbjct: 881 RDGDVVIGVVNPKPTAR-------------EDEKQYKDASSIYKSLIPGAVDKVITEVNN 927 Query: 937 DGVEKDKRALEIEEM 951 DG K + E + Sbjct: 928 DGYPIIKMRIRSERI 942 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 116/327 (35%), Gaps = 57/327 (17%) Query: 27 LLSIQLDSFQKFIEQD-PEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQE- 84 L+ +DSF +FIE+ P G + ++ L + + P + +E Sbjct: 35 LVKHHIDSFNQFIEEIIPNILQGGDNVISE-KATENKIIRYRLTFNDLGIKPPTLENEEN 93 Query: 85 ------CQIRGVTYSAPLRVKLR----LVIYEREAPEGTVKDIKEQEVYMGEIPLMT--- 131 + ++YSA + +V + + E + E++V + +IP+M Sbjct: 94 LLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPEKDVPIAKIPIMVLSK 153 Query: 132 ------------------DNGTFVINGTERVIV---SQLHRSPGVFFDSDKGKTHSSGKV 170 G F++NG+E+V++ S + R P VF D+ Sbjct: 154 YCNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESMIPRKPVVFTQRDQNSL------ 207 Query: 171 LYNARI--IPYR---GS--WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILD 222 LY R+ IP G+ + +++ + I +++ +RAL T E I+D Sbjct: 208 LYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIRALGIETDEDIVD 267 Query: 223 LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV 282 + ++ K + L+ + + + + T + Sbjct: 268 SILD-----VKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFTDTNPEVKA 322 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGEL 309 + ++ I + V +I TG+ Sbjct: 323 EQRRRYLDKIMTQFVL-PHITSGTGDP 348 >UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LW27_BIGNA Length = 1159 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 82/401 (20%), Positives = 139/401 (34%), Gaps = 75/401 (18%) Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K +E G+ +I L + LD + L D+ ++ +L + Sbjct: 812 KTFAERENTNVNGIIEKIE--LESKSSNLFGLDIDGTRKIETLVNGDDVLISKTIKLTGK 869 Query: 1018 YDELKHEFEKKLEAKRRKITQGDD----LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 D + L+ D L G KI+KV + R GDK + HG K Sbjct: 870 GDTKVNTIHSDLKLPLNSQGVVDSIMYSLDEGGYKIIKVRIRSIREPVIGDKFSSLHGQK 929 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 G+I +P D+++NP +PSR IG I ++ Sbjct: 930 GIIGYSYRQSLLPTTATSVTPDLIMNPHAIPSR---------------MTIGHMIEMLMS 974 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 + G F Sbjct: 975 KVSS---------------------------------------HSGKLGDATAFSEGNIG 995 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 +I L + G ++ G G+ ++ + VG +Y +L H+V DK +RS G Y + Sbjct: 996 KIIGHLSKFGIHHFGLEKMISGFNGDILQKSILVGPIYYQRLKHMVVDKFFSRSRGPYEI 1055 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---------- 1303 +T+QP+ GK + GG RFGEME + ++G++ L+E L +SD Sbjct: 1056 LTRQPVEGKTREGGLRFGEMERDCVLSHGSSLFLKERLMDESDKFRVHICEKSGLFCPAN 1115 Query: 1304 -----MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + I + +P + +L +E+ ++ I L Sbjct: 1116 LKTQTFWSTIYHSKSICQIFIPYACKLLFQELIAMCIAPRL 1156 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 115/669 (17%), Positives = 232/669 (34%), Gaps = 105/669 (15%) Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFF---SEDRYDLS 398 + I ++ + +N + ++ + + T A + F + + D Sbjct: 272 KNDKEIINSIFKNNSNSKKLNMLY-NSFLGVTKVQTISHALRYIVDRSFSKSNNKKLDPE 330 Query: 399 AVGRMKFNRSLL--REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 R ++ LL S I + +LI+ N + DD D N+R+ Sbjct: 331 KTAREIIDKKLLPHMGTSINSRFRKGLFICYMAHRLINTLNEIEQPDDKDSYKNKRVDIS 390 Query: 457 GEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL--- 511 G + + F + R + VK +L + D +++ ++ ++ + + Sbjct: 391 GHLFSSLFNNLIKRSIKDVKNQLLKKVKKSDATELEELFSSNILTNGFRYSLATGNWIID 450 Query: 512 ---------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 SQ +++ + LS I+H R+++ T ++R VH +++G VCP+E Sbjct: 451 GMLDYKTGVSQVLNRMSYLSMISHLSRLNS----SYTSNGKILDIRRVHTSYWGIVCPVE 506 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 TPEG G++ + + A ++ + ++ I+ + + Sbjct: 507 TPEGQTCGIVKNFAFLAHVTNSHHIQKNIIQFLKKIMIKNSFTKPMIKTKKDK---PDIS 563 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 + G ++ + S + + R Q ++ V I F E + R + Sbjct: 564 IFVNGSWIGNTFEYFSLMKYLITLRRQ----EIIPFDV------SIVFNEKN--KRIFIW 611 Query: 683 ANMQRQAVPT--LRADKPLVGTGMERAVAVDSG---VTAVAKRGGVVQYVDA---SRIVI 734 ++ R P L+ +E+ + +V+Y+D IVI Sbjct: 612 SDPGRIKRPLFVLKNSNSFFNHSIEKIAKKIKDNFHRWYFYIKNSIVEYLDTEEIENIVI 671 Query: 735 KVN-EDEMYPGEAGIDIY----------------------NLTKYTRSNQNTCINQMPCV 771 K+N + IY +++ +S +NT + M Sbjct: 672 KLNYYNNTELIVDQTQIYKKMINFSEIHASSILGVSASQVPFSQHNQSPRNTYQSSMGKQ 731 Query: 772 SLGEPVERGDVLADGP------------------STDLGELALGQNMRVAFMPWNGYNFE 813 ++G + D E+ G N +A + ++G+N E Sbjct: 732 AIGINYSNFQLRYDTQINILESNQRPLVFTIQKLCLRGQEMPSGINTIMAILSYSGFNQE 791 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLG-PEEITADIPNVGEAALSKLDESGIVY 872 DS++++ V+ F TI + A G E+I + + L LD G Sbjct: 792 DSLIINHSSVERGLFRTIIYKTFAERENTNVNGIIEKIELE---SKSSNLFGLDIDGTRK 848 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 I V G D+L+ K +LT + G+ + S L++P G V + Sbjct: 849 IETLVNGDDVLISKT-----IKLTGK--------GDTKVNTIHSDLKLPLNSQGVVDSIM 895 Query: 933 VFTRDGVEK 941 +G K Sbjct: 896 YSLDEGGYK 904 >UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide B n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E487B4 Length = 830 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 105/271 (38%), Gaps = 70/271 (25%) Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V S + Y + + ++NP G PSRM +G+++E G A G Sbjct: 609 VCSIVWK-----YFCHFSVPQ-IMNPHGFPSRMTVGKLIEFLAGKAGVLEG--------- 653 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + + F ++V+ + E+ Sbjct: 654 ----------------------KFHYGTAFGGDKVVDICED------------------- 672 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 L+ G+ L G TGE + G +Y KL H+V DKMHAR+ G +++ Sbjct: 673 ----LRKHGFNYLGKDFLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVL 728 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KM 1304 T+QP G+A+ GG R GEME L YGA+ L E L + SD DV G Sbjct: 729 TRQPTEGRARDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFQVDVCGDCGLIGHSGW 788 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 + +P + +L +E++S+ I Sbjct: 789 CPYCHCSQNISSLRIPYACKLLFQELQSMNI 819 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 80/451 (17%), Positives = 159/451 (35%), Gaps = 60/451 (13%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + + I ++ L+ E+L +++ G V R R V + Sbjct: 179 LDPGGYFIVRGTEKVILIQEQLSKNRMIVEVDRKGIVSCNVTSSTHERKSR-----TVVI 233 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 ++ Y+ +D + A ME +++ + + F ++L+ Sbjct: 234 VKKGKHYLKHNTFTEDIPI---VVIFKAMGMESDQEIVQTIG--TEESTMVSFASNLEEC 288 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 I +L AL + +R + +S + L+ + ++ Sbjct: 289 HKIQ-------VYTQLQALKYMGMKVRQRRMWGGGSKKSKVDEARELLATTILAHIPVVQ 341 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 FN + +++++I+ + +VDD D+ GN+R+ G++ F Sbjct: 342 FNFRA-----------KSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQLIALLF 390 Query: 465 RVGLVRVERAVKE---------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF- 514 + +K+ R + D+ M QD I I+A G+ + +F Sbjct: 391 EDLFKKFNSELKKYADQNIPRPRAAQFDIVKYMRQDQITNGLITAIST---GNWSVKRFK 447 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGP 567 M++ ++ IS LG +TR + FE R + P+ +G +CP +TPEG Sbjct: 448 MERAGVTQVLSRLSYISCLG--MMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 505 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNL-- 623 GLI +L++ E P K+ + + +H +S E + N N+ Sbjct: 506 GCGLIKNLALMTHITT-DMEEAPIVKLAFNLGVEPVHLMSGEELSMKDVYVVFLNGNILG 564 Query: 624 --DEEGHFVEDLVTCRSKG---ESSLFSRDQ 649 E + R G E + Sbjct: 565 VVREHKRLMRTFRLVRRAGYISEFVSICPNH 595 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 66/405 (16%), Positives = 128/405 (31%), Gaps = 83/405 (20%) Query: 24 VPYLLSIQ------LDSFQKFIEQDPEGQYGLEAAFR-SVFPIQSYSGNSELQYVSY--- 73 +P L ++ +DSF FI F + P+QS L Y+ Y Sbjct: 46 LPAFLKVRGLVRQHIDSFNYFIN---------VEVFSMNFAPLQSTFPAEALPYLQYLNI 96 Query: 74 -----------RLGEPVFDVQECQIRGVTYSAPLRVKL-----------------RLVIY 105 + +P EC++R +TYSAP+ V + R+ I Sbjct: 97 YVGSPDVEESFNITKPT-SPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPIGRMPIM 155 Query: 106 EREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 R + + + E PL G F++ GTE+VI+ Q S ++ Sbjct: 156 LRSSNCVLTGKSPAELAKLNECPL-DPGGYFIVRGTEKVILIQEQLS------KNRMIVE 208 Query: 166 SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK----------LPATIILRALNY 215 K + + + + K V + + + +P +I +A+ Sbjct: 209 VDRKGIVSCNVTSS-------THERKSRTVVIVKKGKHYLKHNTFTEDIPIVVIFKAMGM 261 Query: 216 -TTEQILDLFFEK----VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRIT 270 + ++I+ + V F + V +L+ +++ ++ Sbjct: 262 ESDQEIVQTIGTEESTMVSFASNLEECHKIQVYTQLQALKYMGMKVRQRRMWGGGSKKSK 321 Query: 271 ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGH 330 R+L + L +PV + Y+ +I A + +D Sbjct: 322 VDEARELLATTI-LAHIPVVQFNFR-AKSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRL 379 Query: 331 K----RIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + I LF + + +A +I + MR Sbjct: 380 ELAGQLIALLFEDLFKKFNSELKKYADQNIPRPRAAQFDIVKYMR 424 >UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BKT9_9CRYP Length = 1129 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 91/431 (21%), Positives = 147/431 (34%), Gaps = 89/431 (20%) Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 D + + +E+ + + K L ++ + VL G + + Sbjct: 764 DAMIINKSSIERGFASSNVYNCFDLDIKPSLLKKSNFFKKKKTE--ENVLKTGDLLKKGA 821 Query: 990 DKLPRDRWLELGLTDEEK--QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 +P++ W + +E N E+ ++ + E ++ Sbjct: 822 PLVPKESWYSIHKKNEAFFCYNSSEKAIIDQIKIFSDIENNQNIEKNS------------ 869 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 + + +RR GDK A RHG KGV S + D+P+ + G +I+ NP G PSRM Sbjct: 870 ----IKIRSRRRPLVGDKFASRHGQKGVFSYLYSSIDLPFTDLGMNPEIIFNPHGFPSRM 925 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 IG ILE+ +G G F D Sbjct: 926 TIGVILESMIGKIGALDG-------------------------------------VFHDT 948 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 R +N A E L+ G Y G +GE F V + Sbjct: 949 TPFRFGQNR-------------AAIYHFGEKLRKSGFQFYGNEIFYSGYSGEPFSIDVFL 995 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G + +L H+V DK + G + +T+QP+ GK G RFGEME A+ G + L Sbjct: 996 GIVNYQRLRHMVLDKYQISNQGPKNSLTRQPIKGKKIGGSIRFGEMERDAILGQGCVFLL 1055 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQM-------------------EPGMPESFNVLLK 1328 + L SD R + K + + + +P LL Sbjct: 1056 HDRLQTSSDLHASRLNIEKGSFFDSEKPTSHTFFYKKKFFEKKVINRKILLPYVIKFLLI 1115 Query: 1329 EIRSLGINIEL 1339 E+ S+ + I Sbjct: 1116 ELASINLKINF 1126 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 75/586 (12%), Positives = 180/586 (30%), Gaps = 104/586 (17%) Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE- 392 + +D +++T D R+ + I + T+ + +F + Sbjct: 232 SLMPISDKKIFESLTKTFSKDKFY-RIRIMAMIKDAHETCDLKTQISVLEFLGKVFKTSL 290 Query: 393 --DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN 450 + D ++G +L E K ++ ++ KL+ ++ D+ D L + Sbjct: 291 QTNTIDAKSIGEKFLFNHILIHLGEDKEAKVKL-LLFMINKLLSVQKKISIEDNPDSLSS 349 Query: 451 RRIRSVGEMAENQFRVGL----------VRVERAVKERLSLGDLDTLMP----------- 489 + G + F+ E+ + + Sbjct: 350 QEFLLPGHLIMVYFKEKFESSLNFIFSQKEFEQNISNNFNKEGKSFQKQFCTDFLSKAFM 409 Query: 490 -------QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 Q + +S E +S LS +++ N +++ R ++ G E Sbjct: 410 TTGKGLAQIISTGSYVSKFNHELSQTSGLSVSIERINFGRFLSYFR---SIHRGKFFFEL 466 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 R + P +G +CP+ TP+G G++N + + L + K Sbjct: 467 KNTSGRKLLPQSWGFLCPVHTPDGALCGILNHTASSVLVSLSNPLNCDFFK------KYF 520 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 YL I+ + ++ + D++ VS +S Sbjct: 521 FRYLPKNFLKEKKISSS-------IFMIDGKILGFIPKFFFKSFVDKLRTEKVSVLGKIS 573 Query: 663 VGA---SLIPFLEHDDANRALMGANMQRQAVPTL------------------------RA 695 +G S+ F ++ + R P + Sbjct: 574 LGCEIFSISRFNRKCSFPSCILLSQDGRPLRPVKWFSFKKKKKFSVFKKKNEKDFLNYCS 633 Query: 696 DKPLVGTGMERAVAVDS--------------------GVTAVAKRGGVVQYVDASRIVIK 735 + ++GT + + +D+ ++ G + D ++ Sbjct: 634 EIEIIGTLEQCFLNIDNLDYQSSFFTKNMVGTHSEIEASNILSVIAGATPFSDLNQSPRN 693 Query: 736 VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELA 795 + + +M + + T + R + + P V P+ R ++ DG D Sbjct: 694 MYQCQMS--KQSVGTPFYTFWRRDDIKSFFLLNPQV----PICRNKIIQDGLQMDA--FP 745 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 G N V+ + + G++ ED++++++ ++ ++ + Sbjct: 746 NGFNSVVSVITYTGFDMEDAMIINKSSIERGFASSNVYNCFDLDIK 791 >UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=Eukaryota RepID=Q2I5U5_BATDE Length = 1202 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 63/339 (18%) Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV-LVAGGVEAEKLDK 991 ++ R ++++K+ I L++ +D + L+ G + ++ L+A GV + Sbjct: 926 LYYRVYMDQEKKVGMISTETLEKPSRDTTLR---LKHGTYEKLEDDGLIAPGVRVS-GED 981 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + + + + E + ++ + + + IT D K VK Sbjct: 982 IIIGKTVPIAADSTELGQRTTMHTKRDASTPLKSTENGIVDQVLITTNQD----GFKFVK 1037 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V + R GDK A RHG KG + EDMP+ +G D+++NP +PSRM IG Sbjct: 1038 VRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMPFTADGITPDLIINPHAIPSRMTIGH 1097 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 ++E L +STF+ +E Sbjct: 1098 LVECLLSK-----------------------------------------VSTFTGDE--- 1113 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 ATP F I + L+ G LY+G TG + V G Y Sbjct: 1114 ---------GDATP-FTDVTVEAISQALQGYGYQRRGFEVLYNGHTGRKLNAQVYTGPTY 1163 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 +L H+VDDK+H+R+ G ++T+QP+ G+++ GG RF Sbjct: 1164 YQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 1202 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 91/508 (17%), Positives = 163/508 (32%), Gaps = 101/508 (19%) Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CP ETPEG GL+ +LS+ G P + + + + +S Sbjct: 609 CPAETPEGQACGLVKNLSLMGYIT-VGSPAPPILEFLEEWTMESLEEISPS------TIP 661 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + + G +V R + R +DVS + V DA R Sbjct: 662 TATKIFLNGQWVG---IHRDPDQLVSTLRRLRRSVDVSPEVSVVRDVRDRELRLCTDAGR 718 Query: 679 ALMGANMQRQAVPTLRADKPLVGTG-MERAVAVDSGVTAVAKRGGVVQYVDASRI----- 732 +++ + ++ LV T M + + D GVV+Y+D Sbjct: 719 IA-------RSLFVVTPEQSLVLTKEMVQQLHEDQIQWKDLLSYGVVEYIDTEEEETVMI 771 Query: 733 -----------------------------------VIKVNEDEMYPG---EAGIDIYNLT 754 E++P I Sbjct: 772 CMTPDDLAEARMAAAGQVVERHQVGTGRLKSATVYTRNYTHCEIHPSMILGICASIIPFP 831 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------------TDLGELAL 796 + +S ++ + M ++G + + D S +L Sbjct: 832 DHNQSPRSVYQSAMGKQAMGLFLTNFQLRMDTMSNILFYPQKPLATTRAMEFMHFRDLPA 891 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP- 855 G N VA ++GYN EDS+++++ + F +++ + + + E T + P Sbjct: 892 GINAVVAIACYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYMDQEKKVGMISTE-TLEKPS 950 Query: 856 -----NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 + KL++ G++ G V+G DI++GK P E R K Sbjct: 951 RDTTLRLKHGTYEKLEDDGLIAPGVRVSGEDIIIGKTVPIAADST---ELGQRTTMHTK- 1006 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDK---RALEIEEMQLKQAKKDLSEELQI 966 +D+S + + +G V V + T +DG + K R++ I M K A + Q Sbjct: 1007 ---RDASTPLKSTENGIVDQVLITTNQDGFKFVKVRVRSIRIPHMGDKFASR----HGQK 1059 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 G+ R + L P Sbjct: 1060 GTVGITYRTEDMPFTADGITPDLIINPH 1087 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 19/125 (15%) Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-------DLDTLMPQDMINAKPISAAV 502 +R+ G + FR+ ++ + V L + +L + I P + Sbjct: 1 KKRLDLAGPLLGGLFRMLFRKLTKDVSRYLQITMESGREFNLSLAVKSSTITNGPKYSLA 60 Query: 503 KEFFG--------SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 +G + +SQ +++ S ++H RR++ + R+ + R +H TH Sbjct: 61 TGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNT----PIGRDGKLAKPRQLHNTH 116 Query: 555 YGRVC 559 +G VC Sbjct: 117 WGMVC 121 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 36/235 (15%) Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG-GLTRERAGFEVRDVH 551 I+ I A K F + D + +S + RR + P + R+ E+R Sbjct: 655 ISPSTIPTATKIFLNGQWVGIHRDPDQLVSTLRRLRRSVDVSPEVSVVRDVRDRELR--L 712 Query: 552 PTHYGRVC---PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSA 608 T GR+ + TPE ++ L + ++ + + V + Y+ Sbjct: 713 CTDAGRIARSLFVVTPE-QSLVLTKEMVQQLHEDQIQWKDLLSYGV--------VEYIDT 763 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV-----DYMDVSTQQVVSV 663 EE +I +L E V R + + V + ++ ++ + Sbjct: 764 EEEETVMICMTPDDLAEARMAAAGQVVERHQVGTGRLKSATVYTRNYTHCEIHPSMILGI 823 Query: 664 GASLIPFLEHDDANRALMGANMQRQAV----------------PTLRADKPLVGT 702 AS+IPF +H+ + R++ + M +QA+ KPL T Sbjct: 824 CASIIPFPDHNQSPRSVYQSAMGKQAMGLFLTNFQLRMDTMSNILFYPQKPLATT 878 >UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=Solanum bulbocastanum RepID=Q17U53_SOLBU Length = 1018 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 167/1053 (15%), Positives = 330/1053 (31%), Gaps = 268/1053 (25%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI-----QSYSGN-------SELQYVSYRL 75 +S Q+DS+ FI +YG++ F SV I S + +++ L Sbjct: 86 ISHQIDSYNDFI------RYGIQRVFDSVGEIHVEPGYDPSKKGEGDWKHASVKFGKVTL 139 Query: 76 GEPV---------FDVQE--------CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 P ++ +E +++ +TYSA R+++ + V+ K Sbjct: 140 DRPKFWAGEKFSAYNGEEYLNLWPRHARLQNMTYSA------RIIVETHVFTKKLVRSDK 193 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 + G E+ + DK + ++ RI Sbjct: 194 FKT------------------GVEQFV--------------DKECVMEDKRDVFIGRI-- 219 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 P + + D F+ + I + Sbjct: 220 --------------------------PVMVNSELCWMSGADRPDCEFDHGGYFIVKGAEK 253 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + + E++ + + V G + +++ E + I+ + ++ A Sbjct: 254 IFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAKALSVYFFA 313 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + I L +++ E+ + + + I +D D + Sbjct: 314 EMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADKN--------CEDFRK 365 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 AL + R+++ + P +E+ E + F N S L++ Sbjct: 366 GKKALAYVDRLVKSCKFPPQESVEECIKEYLFP--------------NLSGLKQ------ 405 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 + ++K L+ G+ +VD+ D N+R+ GE+ E + RV + ER + + Sbjct: 406 --KARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAERRMVKA 463 Query: 479 LSL---GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLS 522 L GD + ++A I+ + F + + + NPL Sbjct: 464 LQRDLCGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQ 523 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 R+ +T + R HP+H+G+VC + TP+G N GL+ +L+ + Sbjct: 524 MTADLRK----TRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVS 579 Query: 583 E---YGFLETPYRKVTDGVVTDEIHYLSAIE----EGNYVIAQANSNLDEEGHFVEDLVT 635 LET +R +V D L + +G++V +S L FV L Sbjct: 580 TTVLKPLLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSAL-----FVSKLRR 634 Query: 636 CRSKGESSL-------FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 R + E + ++ + E D R ++ R Sbjct: 635 QRRRNEVPHQLAHTLAIPPGICYLLPTHVPVTLTEAQVEVKRDEQQDEVRIF--SDAGRI 692 Query: 689 AVPTL-------------------------------------RADKPLVGTGMERAVAVD 711 P L + G+E + D Sbjct: 693 MRPLLVVSNLKNIKALKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKAD 752 Query: 712 S-------------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 + G++ + + + + E + + I + R Sbjct: 753 KENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHS-QQAIGFSTVNPNAR 811 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG-----------ELALGQNMRVAFMPW 807 + NT P P+ G +L+D E GQ VA Sbjct: 812 VDTNTHQLYYPQ----RPLF-GTMLSDSLGKPKCARHQKGMLSRPEYYNGQCAIVAVNVH 866 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAA----- 861 GYN EDS++++ ++ F + H++ +G + D N G+ Sbjct: 867 LGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGR 926 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 + LD+ G +IGA + GDI++GK G D S+++ Sbjct: 927 VDSLDDDGFPFIGANLQSGDIIIGKYAESG----------------------ADHSVKMK 964 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 + G V V + + + K+ + + ++ K Sbjct: 965 HTERGMVQKV-LLSANDDGKNFAVVSLRQVYEK 996 >UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT n=1 Tax=Hydra magnipapillata RepID=UPI0001924CDE Length = 1117 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 68/404 (16%), Positives = 134/404 (33%), Gaps = 88/404 (21%) Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 +++ + G + ++ G E+ D + N + ++ Sbjct: 769 PDKMAGTKNGNYDKLNE----HGYIPEETQITKGDVIFGKVTPINDTTNTGRIFKDSSEQ 824 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 K + ++ I D + K + +R + GDK RHG KG I Sbjct: 825 YKSYADGVIDRVYTDIKNQD-----GYETRKALVRSERFPRIGDKFCSRHGQKGTIGISL 879 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 DMP+ + G DI++ + + I + + Sbjct: 880 RGIDMPFTKWGIRPDIIV---------------NPNAIPSRMSIAQLCECLFGKV----- 919 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 KGM + F+ +K++L+ Sbjct: 920 ----------------------------------GALKGMNMDGTAFEDYDIDAMKDMLE 945 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 + LY+G G+ + + +G Y +L H+V DK+HAR G +++T+Q Sbjct: 946 SLGYQRECEEYLYNGMLGKMIKHMIFIGPTYYQRLRHMVQDKIHARGRGPVTILTRQAPE 1005 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----------------- 1303 G+++ GG R GEME A+ +G A L+E + +D + Sbjct: 1006 GRSREGGLRLGEMERDAVITHGIAKFLKERMLDCADAYSTYVCGICGMFARREDSRFSEP 1065 Query: 1304 --------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + +P +F ++L+E+ ++ I + Sbjct: 1066 TPGPDDVYYCPKCNNYTDIHQIMIPYAFKLMLQELMAMNIAPRI 1109 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 111/622 (17%), Positives = 214/622 (34%), Gaps = 117/622 (18%) Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN----QFRVGLVRVERAVKERLS 480 + ++ KL+ + G+ VD+ D +RI ++ E+ E Q++ + + R+ Sbjct: 257 LGYIINKLLKVELGRAPVDNRDAYTKKRIDNIRELLEEIMIQQYKNNMNECSKQFTARMG 316 Query: 481 LGDLDTLMPQDMINAKPISAAVKEF-----FGSS----QLSQFMDQNNPLSEITHKRRIS 531 D D P ++I+ + F G+ +SQ + +N+ + +T RI Sbjct: 317 -DDGDAADPYNVIHQFKAGTFEQGFKASIMIGNWSRKKGVSQMLQRNSYMQLLTSLSRID 375 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL------INSLSVYAQTNE-- 583 + + R V P+ +C + TPE NIGL I S+++ + N Sbjct: 376 S--QSSTQSAGRLTKPRHVDPSTVPFLCVVSTPEHGNIGLVKHLSMIGSITIGDKDNTEI 433 Query: 584 -----------YGFLETPYRK----------------------VTDGVVTDEIHYLSAIE 610 E P + V D + + + Sbjct: 434 VKEFIMTHPLVKDISEVPVYELKNMFKVFLNGEWLKVVENSYDVGDNYYDNPVIKFYSDA 493 Query: 611 EGNYVIAQAN--------SNLDEEGHFVEDLV-----TCRSKGESSLF-SRDQVDYMDVS 656 + + + N D E F D R G++ + +++ +D + + Sbjct: 494 KVKKISCEFNPQMTSVVFDYKDNEIRFNTDSGRLYRPVIRINGDNEMMLTKEMIDKISLK 553 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 V + ++++ + + + Q + D+ ++ ER +DS Sbjct: 554 ATDVGKISDWDEFYIQY---PYPIEFIDSEEQPFMLIAEDRKVL--NFERKKIIDSEKHV 608 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT-CINQMPCVSLGE 775 + + ++ + E++P +I + N +T I Q G Sbjct: 609 FKGEESKIVNRFDDKFFLRYDSIEIHPSVLLSEIATNIPFCEKNCSTRNIYQYAQGKQGM 668 Query: 776 PV------ERGD---VLADGPS----------TDLGELALGQNMRVAFMPWNGYNFEDSI 816 V R D +L + T L G N VA ++GYN EDSI Sbjct: 669 GVYCTAYRSRTDLSFILYNPEVPVVNTRTSKYTYTDILPPGSNAVVAIACYSGYNQEDSI 728 Query: 817 LVSERVVQEDRFTTIHIQEL--ACVSRDTKLGPEEITADIPNV----GEAALSKLDESGI 870 + + +Q F ++ + + + G ++ P+ KL+E G Sbjct: 729 VFNMTSLQRGLFRSMSLYKYISSITKNQETSGNDKFMKPPPDKMAGTKNGNYDKLNEHGY 788 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 + ++T GD++ GKVTP +T T KDSS + + G + Sbjct: 789 IPEETQITKGDVIFGKVTPINDTTNT-------------GRIFKDSSEQYKSYADGVIDR 835 Query: 931 V--QVFTRDGVEKDKRALEIEE 950 V + +DG E K + E Sbjct: 836 VYTDIKNQDGYETRKALVRSER 857 >UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide, putative n=3 Tax=Fungi/Metazoa group RepID=A8P4S3_BRUMA Length = 1104 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 100/263 (38%), Gaps = 64/263 (24%) Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+++ G D+++NP G ++ K+ +L + V Sbjct: 885 EDMPFNDLGMCPDMIMNPH----------------GYPSRMTVGKLMELLSGKNAV---- 924 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 G F G + + E L Sbjct: 925 ----------------------------------LSGKFHYGTAFGGDQVDIVCEELAAR 950 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 G+ L G TG+Q + G +Y KL H+V DKMHAR+ G +++T+QP G+ Sbjct: 951 GFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1010 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN----------GRTKMYKNIVDGN 1312 A+ GG R GEME L AYGA+ L E L V SD+ G + Sbjct: 1011 ARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDVCSQCGLIGYKSWCQMCRSSR 1070 Query: 1313 HQMEPGMPESFNVLLKEIRSLGI 1335 +P + +L +E++S+ I Sbjct: 1071 TMATIKIPYACKLLFQELQSMNI 1093 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 113/585 (19%), Positives = 205/585 (35%), Gaps = 111/585 (18%) Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 +G+ + + ++++L+ G E DD D GN+R+ G + F R Sbjct: 315 PCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRF 374 Query: 472 ERAVKERLSLG---------DLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPL 521 +K D+ + QD+I + A G+ + +F M++ Sbjct: 375 NSELKRIADNSLGKTLAAPLDIVKHVRQDLITNALVDALAT---GNWTIKRFKMERQGVT 431 Query: 522 SEITHKRRISALGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINS 574 ++ IS LG +TR + FE R + P+ +G +CP +TPEG + GL+ + Sbjct: 432 QVLSRLSYISVLG--MMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKN 489 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANSNL----DEEGH 628 L++ + E P ++ +++ L SAI Y I N + + Sbjct: 490 LALLSHITTDSD-EKPVIRLLYNAGVEDVKSLHFSAIHNPAYHIVFLNGVIVGLTIDPQR 548 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 V + R G + F VSV + + ++ R Sbjct: 549 IVSTIRAVRRHGLLNEF---------------VSVSTNAA-------QRSVYIASDGGRL 586 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKR--GGVVQYVD---ASRIVIKVNEDEMYP 743 P + + E + G G+++Y+D + I V E+++ P Sbjct: 587 CRPYIIVKNSIPQVTQEHIEELKKGYRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKP 646 Query: 744 GEAGIDIYN---------LTKYTRSNQ---NTC-------------INQ--------MPC 770 ++I L Y NQ NT NQ Sbjct: 647 TTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLL 706 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 V P+ + + + +L GQN +A M ++GY+ ED++++++ + Sbjct: 707 VYPQRPLVKTKTIEFC---NFEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRC 763 Query: 831 IHI-------QELACVSRDTKLGP--EEITADIPNVGEAALSK--LDESGIVYIGAEVTG 879 + ++ + D +GP E T LD+ GIVY+GA + Sbjct: 764 LVYKHAKATARKYPNQTFDRLMGPTIEAATRK------PIYKHQVLDQEGIVYVGACIRS 817 Query: 880 GDILVGKVTP--KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 +++ K P E T I G + KD S+ N Sbjct: 818 KQVMINKHMPVVSMEAGATVSNNDGTNIGGSHEVEYKDVSVVYRN 862 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 90/254 (35%), Gaps = 62/254 (24%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLG 76 P L V L+ + S+ F+ + ++ R+ I + + L+Y+ +G Sbjct: 19 VPAFLQVRGLVKQHIASYDYFVSTE------IKKILRANDKITSDANPSFYLKYLDIHVG 72 Query: 77 EP-----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 P EC++R +TYSAP+ V + + + + +G Sbjct: 73 MPSSEEGFNQINDKISPHECRLRDMTYSAPISVDI--------EYTRGSQRVLRNGLIIG 124 Query: 126 EIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 ++P+M G F+I G+E+V++ Q S ++ Sbjct: 125 KMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKVVLIQEQLS------KNR 178 Query: 162 GKTHSSGKVLYNARIIPY---RGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNY-T 216 + K I+ R S + K +VR ++ +P II +A+ + + Sbjct: 179 IMIGRNSKKELQCEILSSTQERKS-KTYIASKKQRYYVRHNQLSDDVPIAIIFKAMGFES 237 Query: 217 TEQILDLFFEKVIF 230 I+ + F Sbjct: 238 DHDIVSAVGLEEKF 251 >UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S72_GUITH Length = 1109 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 118/309 (38%), Gaps = 71/309 (22%) Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V + L KR+ GDK A RHG KG++S +E++P+ E G DI+ NP G PSRM I Sbjct: 851 VMIRLKSKRKPIEGDKFASRHGQKGILSFKYEVENLPFSETGIIPDILFNPHGFPSRMTI 910 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 G ++E+ G + GA D S F Sbjct: 911 GMVIESLSGKS-------------------------------GALNGNFNDSSPF----- 934 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 T + K E L+ G+ Y G G + V VG Sbjct: 935 --------------TSFLNCNKSYIFGEFLRENGFEFYGKEMFYSGFVGLPLQTDVFVGV 980 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 ++ +L H++ DK + + + +T+QP+ G+ G R GEME AL +G + L E Sbjct: 981 IHYQRLKHMILDKFQVSNNSARNHLTRQPIKGRKLGGSIRLGEMERDALLGHGCIFLLHE 1040 Query: 1290 MLTVKSD-------------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 + SD N +K I ++ + +P L+ E+ Sbjct: 1041 KMQKSSDLHGVFIENTNSDIKDLFFNKYNYNSKFLSTI--KSYPRKIFVPYVLRYLICEL 1098 Query: 1331 RSLGINIEL 1339 L +N+ + Sbjct: 1099 SVLNLNLNI 1107 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 103/699 (14%), Positives = 228/699 (32%), Gaps = 126/699 (18%) Query: 321 LLAKLSQSGHKRIETLFTNDLDHGP--------YISETLRVDPTNDRLSALVEIYRMMRP 372 +L + I TN+L IS++ +N R + L I ++ + Sbjct: 224 ILKAIKDVSDTEIFKDITNNLHDNNMFKEVAIKLISDSYNYIKSNFRDNYLEYIGKLFKI 283 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 E +NL + L N+ L +I +++KL Sbjct: 284 FEKKIHLNNLETGKNLIENN----LFIHVENDMNQKYLL-------------LIYMIQKL 326 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGDLDTLMPQ 490 I R G ++ D + + I G + + L +K E +++ + + Sbjct: 327 IKSRMGLNLGENPDSIEFQEILLSGNLIGSILEKKLSANFDLIKIDEFMNIENSPIRKTK 386 Query: 491 DMINA-KPISAAVKEFFGSSQL-----------SQF---MDQNNPLSEITHKRRISALGP 535 ++ S ++ S + S F +++NN ++ R ++ Sbjct: 387 LIMKVFSNFSVGIRYLISSGNVPLIVNFEIPQTSGFNISIERNNYSRFLSFFR---SIHR 443 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS---VYAQTNEYGFLETPYR 592 G R + P+++G +CPI TP+G G++N L+ + + N + Sbjct: 444 GKYFTTLKTTSGRKLMPSNWGYLCPIHTPDGSLCGILNHLTISSITSVVNPIERINFLKY 503 Query: 593 KVTDGVVTDEIHYLSAIE---EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 + D + + + +I + + D + C + +FS + Sbjct: 504 FKKHKTIFDRLSFKNRTSIILLDGKIIGFSTEIFLKWFT---DKIRCEKVSDFGIFS-NS 559 Query: 650 VDYMDVSTQQVV---------SVGASLIP---------FLEHDDANRALMGANMQR---- 687 ++ + + + ++ S L P F + + N + N Sbjct: 560 IEIVCLKNENILNLFELKIYSSEARLLRPVRWNSFNSNFNKTNSKNESSFTYNFHTIELI 619 Query: 688 -----------QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 Q++ T + + L+ T E + + G + D ++ + Sbjct: 620 GSLEQSYLNIHQSIFTKKGEICLLYTHYE-----IDNLNIFSIVPGCTPFFDMNQSPRNM 674 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 + +M GI +N+ + + + S+ P+ R + DG D Sbjct: 675 YQCQMAKQSIGIPFHNI--WRKMDSKIYFLF----SVQIPICRNKINQDGLGLDN--FIN 726 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 G N V + ++ ++ ED+++ ++ ++ + + D L I N Sbjct: 727 GFNAVVGVLSYSSFDMEDAVVFNKSSIERGLGMS---YIYNTSNFDVNLSM--IKNLNKN 781 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 + LD GI +G + DI+ LL V+++ Sbjct: 782 YSTLHYNCLD--GICNVGNALKKKDII-----------------LLNNKL-VNNKLVRET 821 Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 ++ N +V V++ + K + I ++ Sbjct: 822 TINYNNDEIASVDCVKILKNYSKIQSKHNVMIRLKSKRK 860 >UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide n=71 Tax=root RepID=RPO2_VARV Length = 1164 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 102/474 (21%), Positives = 174/474 (36%), Gaps = 91/474 (19%) Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG---VEKDKRALEIEEMQLKQ 955 K+ FG+ + S + N G +I Q R G V K +EI Sbjct: 731 SKIAANCFGQHV-TIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVEIPLENFNN 789 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE-QL 1014 ++D S LE+ R+ A L +G A + + D + NQ+ + Sbjct: 790 KERDRSNAYSKLESNGLVRLNAFLESGDAMARNISSRTLED-------DFARDNQISFDV 842 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 +E+Y ++ K +R ++ D + V+V +RR GDK R KG Sbjct: 843 SEKYTDMY-----KSRVERVQVELTDKVK------VRVLTMKERRPILGDKFTTRTSQKG 891 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA-------AKGIGDK 1127 ++ I ++PYDENG D+++N + SR I ++E L A KG Sbjct: 892 TVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGENRP 951 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 + + + +F ++ Y+ + +LS E + Sbjct: 952 VCFPSSNETSIDTYMQFAKQCYEHLNPKLTEKELSDKIFCEKI----------------- 994 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 LYD T + + V G +Y L+L HL DK R Sbjct: 995 ------------------------LYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRC 1030 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 G + + +Q G+ + GG +FGEME L A+GAA T+ E+L +D + +N Sbjct: 1031 RGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQD-VYICEN 1089 Query: 1308 I------VDGNHQM-------------EPGMPESFNVLLKEIRSLGINIELEDE 1342 + + + V L ++ + G+ ++L+ E Sbjct: 1090 CGDIAAQIKSINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFE 1143 Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 107/594 (18%), Positives = 202/594 (34%), Gaps = 81/594 (13%) Query: 346 YISETLRVDPTNDRLSAL-VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 +I +L D + + + I R E T ++ +L +E S + + Sbjct: 247 FIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDFNIDTYINDLVEAEHVKQKSQLTINE 306 Query: 405 FNRSLLREEIEGSGI----LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM- 459 F +L + L +I +++K + D D + RI + G+ Sbjct: 307 FKYEMLHNFLPHMNYTPDQLKGFYMISLLRKFLYCIYYTSRYPDRDSMVCHRILTYGKYF 366 Query: 460 -------AENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS 512 EN + K R + ++ +N S +F S Sbjct: 367 ETLAHDELENYIGNIRNDIMNNHKNRGTYAVNIHVLTTPGLNHAFSSLLSGKFKKSDGSY 426 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE-GPNIGL 571 + + + I+ R + + F VR HP+ Y C + PE GP +GL Sbjct: 427 RTHPHYSWMQNISIPRSVGFY--PDQVKISKMFSVRKYHPSQYLYFCSSDVPERGPQVGL 484 Query: 572 INSLSVYAQT-----NEYGFLETPYRKVTDGVVTDEIHYLS---AIEEGNYVIAQANSNL 623 ++ LSV + +EY LE + D+I Y I N ++A N N+ Sbjct: 485 VSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDDISYFETGFPITIENALVASLNPNM 544 Query: 624 DEEGHFVEDLVTCRSKGES------SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD--- 674 + FV D + G RD ++ + ++ + G + PFL D Sbjct: 545 ICD--FVTDFRRRKRMGFFGNLEVGITLVRDHMNEIRIN----IGAGRLVRPFLVVDNGE 598 Query: 675 ---DANRALMGANMQRQAVPTLRADKPLVGT--GMERAVAVDSGVTAVAKRGGVVQYVDA 729 D L + + ++ + P V +E+ + + R Sbjct: 599 LMMDVCPEL-ESRLDDMTFSDIQKEFPHVIEMVDIEQFTFSNVCESVQKFRM-------M 650 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT-------CINQMPCVS-----LGEPV 777 S+ K + +P E D Y + N N+ C +S + + Sbjct: 651 SKDERKQYDLCDFPAEFR-DGYVASSLVGINHNSGPRAILGCAQAKQAISCLSSDIRNKI 709 Query: 778 ERG-------DVLADGPSTDLGELAL---GQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 + G + + + ++A GQ++ +A M + G N ED I++ ++ +Q Sbjct: 710 DNGIHLMYPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGG 769 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 + ++ +E A SKL+ +G+V + A + GD Sbjct: 770 LDIVTAKKHQVEIPLENFNNKERDR------SNAYSKLESNGLVRLNAFLESGD 817 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Ta... 1444 0.0 UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 T... 1422 0.0 UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 T... 1404 0.0 UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Ta... 1402 0.0 UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Ta... 1398 0.0 UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 T... 1393 0.0 UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Ta... 1379 0.0 UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Ta... 1333 0.0 UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulf... 1322 0.0 UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria Re... 1319 0.0 UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 T... 1295 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 1205 0.0 UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Ta... 1176 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1149 0.0 UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax... 1142 0.0 UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Ta... 1138 0.0 UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria Re... 1137 0.0 UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Ta... 1129 0.0 UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Ta... 1120 0.0 UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Ta... 1109 0.0 UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella ... 1105 0.0 UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus C... 1084 0.0 UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax... 1069 0.0 UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria Rep... 1048 0.0 UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 T... 1045 0.0 UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria R... 973 0.0 UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Ta... 972 0.0 UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Ta... 952 0.0 UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 T... 881 0.0 UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=... 880 0.0 UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 T... 873 0.0 UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 870 0.0 UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Ta... 870 0.0 UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira ... 866 0.0 UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 863 0.0 UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haem... 847 0.0 UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Ta... 838 0.0 UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax... 807 0.0 UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Ta... 796 0.0 UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculu... 795 0.0 UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomac... 787 0.0 UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Ta... 766 0.0 UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 T... 753 0.0 UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcu... 751 0.0 UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Ta... 750 0.0 UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA po... 747 0.0 UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 T... 746 0.0 UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax... 742 0.0 UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Ta... 732 0.0 UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax... 729 0.0 UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Ta... 729 0.0 UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax... 728 0.0 UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax... 723 0.0 UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Ta... 721 0.0 UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax... 721 0.0 UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax... 709 0.0 UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacter... 695 0.0 UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Ta... 695 0.0 UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacter... 693 0.0 UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax... 683 0.0 UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 T... 682 0.0 UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 T... 674 0.0 UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 672 0.0 UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Ta... 656 0.0 UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax... 655 0.0 UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax... 655 0.0 UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Ta... 653 0.0 UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax... 647 0.0 UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax... 643 0.0 UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Ta... 643 0.0 UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax... 620 e-175 UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Ta... 618 e-175 UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular o... 612 e-173 UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 591 e-166 UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 584 e-165 UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=A... 579 e-163 UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax... 573 e-161 UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas ... 567 e-160 UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax... 555 e-156 UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae... 555 e-156 UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 ... 555 e-156 UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax... 554 e-156 UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax... 552 e-155 UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 T... 552 e-155 UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis sol... 552 e-155 UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 543 e-152 UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota ... 541 e-152 UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax... 522 e-146 UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 513 e-143 UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota Re... 512 e-143 UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-termi... 510 e-142 UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-termi... 507 e-141 UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carte... 502 e-140 UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-termi... 501 e-140 UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 496 e-138 UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 496 e-138 UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax... 481 e-133 UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabdit... 472 e-131 UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Ta... 471 e-131 UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta ... 465 e-129 UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax... 465 e-129 UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogon... 457 e-126 UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota R... 454 e-125 UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix s... 450 e-124 UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit ... 448 e-124 UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas... 434 e-119 UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus ma... 433 e-119 UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata Re... 426 e-117 UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota R... 426 e-117 UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia inte... 423 e-116 UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomona... 419 e-115 UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=... 419 e-115 UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Ac... 408 e-112 UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 408 e-112 UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain ... 402 e-110 UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=A... 375 e-102 UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=F... 374 e-101 UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=45... 368 e-100 UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=12... 362 7e-98 UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota ... 361 1e-97 UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeot... 359 5e-97 UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26... 359 5e-97 UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-termi... 354 1e-95 UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 350 3e-94 UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga bre... 347 1e-93 UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides ... 347 2e-93 UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus ma... 346 3e-93 UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit ... 346 4e-93 UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeo... 346 4e-93 UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 343 2e-92 UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax... 342 5e-92 UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplant... 341 8e-92 UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 339 5e-91 UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=So... 339 6e-91 UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax... 338 7e-91 UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 336 3e-90 UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorell... 336 4e-90 UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=F... 336 4e-90 UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpu... 335 8e-90 UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 331 9e-89 UniRef50_Q5RM00 DNA-directed RNA polymerase (Fragment) n=26 Tax=... 331 1e-88 UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota Re... 331 1e-88 UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=2... 330 2e-88 UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata Re... 329 4e-88 UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 325 6e-87 UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophy... 325 9e-87 UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit R... 324 2e-86 UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 324 2e-86 UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepI... 322 5e-86 UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomyce... 322 8e-86 UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=L... 320 2e-85 UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 320 3e-85 UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella s... 319 6e-85 UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kD... 319 6e-85 UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n... 319 6e-85 UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora l... 318 1e-84 UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporid... 318 1e-84 UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit ... 317 2e-84 UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylu... 317 2e-84 UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota R... 317 2e-84 UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyc... 316 5e-84 UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 316 6e-84 UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular org... 315 9e-84 UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Ta... 314 2e-83 UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-termi... 313 2e-83 UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora ... 313 4e-83 UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 312 5e-83 UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 311 2e-82 UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 ... 311 2e-82 UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta ... 311 2e-82 UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 ... 311 2e-82 UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 ... 310 2e-82 UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 310 3e-82 UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 309 4e-82 UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putat... 309 4e-82 UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 T... 309 7e-82 UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi... 308 1e-81 UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenop... 307 2e-81 UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 307 2e-81 UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa... 307 3e-81 UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q... 304 1e-80 UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 304 2e-80 UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomat... 304 2e-80 UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomona... 303 3e-80 UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 T... 302 6e-80 UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 300 3e-79 UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 299 7e-79 UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 ... 297 3e-78 UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitoz... 296 3e-78 UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium c... 295 1e-77 UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium... 294 1e-77 UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota R... 294 2e-77 UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=... 292 4e-77 UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas R... 292 5e-77 UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax... 292 6e-77 UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 292 7e-77 UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum... 292 7e-77 UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophy... 292 7e-77 UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (... 291 2e-76 UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium R... 290 2e-76 UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora ... 290 2e-76 UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 290 3e-76 UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenop... 289 5e-76 UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 289 5e-76 UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 288 1e-75 UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=... 287 3e-75 UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia ... 286 3e-75 UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit ... 285 6e-75 UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 ... 284 2e-74 UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 279 5e-73 UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 279 6e-73 UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa pol... 278 1e-72 UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax... 277 2e-72 UniRef50_A7SSE2 DNA-directed RNA polymerase n=1 Tax=Nematostella... 276 4e-72 UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 276 5e-72 UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus... 274 2e-71 UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=I... 272 7e-71 UniRef50_Q0CKF7 DNA-directed RNA polymerase I polypeptide 2 n=3 ... 272 1e-70 UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 271 1e-70 UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 268 1e-69 UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 267 2e-69 UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psych... 265 8e-69 UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative ... 265 1e-68 UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=E... 262 5e-68 UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=P... 262 8e-68 UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunalie... 261 2e-67 UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious s... 261 2e-67 UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella t... 256 3e-66 UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hyp... 254 2e-65 UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit ... 253 3e-65 UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA PO... 252 6e-65 UniRef50_Q06VE3 RNA polymerase subunit n=3 Tax=Ascovirus RepID=Q... 250 3e-64 UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis ... 249 5e-64 UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 247 2e-63 UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrel... 247 2e-63 UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 245 6e-63 UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 244 2e-62 UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) II... 241 1e-61 UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=... 241 2e-61 UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus Re... 240 2e-61 UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax... 239 7e-61 UniRef50_B9F8X6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 238 1e-60 UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-termi... 238 1e-60 UniRef50_Q1L6B6 RNA polymerase II second largest subunit (Fragme... 227 2e-57 UniRef50_Q4ZJA8 DNA-directed RNA polymerase n=3 Tax=Lymphocystiv... 227 3e-57 UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=P... 222 8e-56 UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax... 221 1e-55 UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular org... 218 9e-55 UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobu... 218 2e-54 UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 218 2e-54 Sequences not found previously or not previously below threshold: >UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Tax=cellular organisms RepID=RPOB_NOVAD Length = 1392 Score = 1444 bits (3738), Expect = 0.0, Method: Composition-based stats. Identities = 783/1360 (57%), Positives = 1012/1360 (74%), Gaps = 29/1360 (2%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY--GLEAAFRSVFPIQSYSGN 65 KKRIRK FG +V+ +P L+ +Q +S+++F+ DP Y GLE RSVFPIQ ++G Sbjct: 17 KKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDPATGYVSGLEKTLRSVFPIQDFAGT 76 Query: 66 SELQYV---SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK--DIKEQ 120 + L Y L P +DV EC+ RG+TY+AP++V L+L +E +A T DIKEQ Sbjct: 77 ASLDIKEKDGYVLESPKYDVNECRQRGITYAAPMKVTLKLATFEVDAETETKSLIDIKEQ 136 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG+IPLMT+NGTF INGTERVIVSQ+HRSPGV FD D+GKTHSSGK L+ AR+IPYR Sbjct: 137 DVYMGDIPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIPYR 196 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 GSWLDFEFD KD + VRIDR+RKLP T +L AL E IL F++ V + + ++ Sbjct: 197 GSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLGDEDILHHFYDTVTWARAEGGWKVP 256 Query: 241 LVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 V E+ RG +FDI +G+V G++I+ R + KD ++ + +P E I G+ A Sbjct: 257 FVLEQWRGSKPAFDIVDAKSGEVIFPAGQKISPRAANKAAKDGLEALLIPTEEIFGRYAA 316 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 +D IDESTG + A E+S + L L ++G ++ L + + GP+I TL+ D D Sbjct: 317 RDLIDESTGRIWIEAGDEVSPENLDLLDKAGIDNLDLLDIDHISTGPWIRNTLKADKAPD 376 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R AL +IYR+MRPGEPPTRE AE+LF+ LFF DRYDLSAVGR+K N L + + Sbjct: 377 RDHALADIYRVMRPGEPPTRETAEALFDGLFFDGDRYDLSAVGRVKLNMRLGLDCPDTVT 436 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 L DDI+ V+K+L+++++GKGEVDDID+LGNRR+RSVGE+ ENQ+RVGL+R+ERAVKER Sbjct: 437 TLRTDDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 496 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S D+ T+MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGL Sbjct: 497 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 556 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 TRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLS +A+ N+YGF+ETPYRKV DG Sbjct: 557 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVVDGK 616 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT ++ YLSA+EE + +AQA++ L +G FVE+LV+ R GE + RD V MDVS + Sbjct: 617 VTKDVIYLSAMEEQKHTVAQASAELTADGSFVEELVSARQNGEFVMAPRDTVTLMDVSPK 676 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP ++AD P VGTGME VA DSG A Sbjct: 677 QLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKADAPFVGTGMEETVARDSGAAISA 736 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 R GVV VDA+RIVI+ + ++ PG++G+DIY L K+ RSNQ+TCINQ P V +G+ +E Sbjct: 737 LRSGVVDQVDATRIVIRAS-GDIEPGQSGVDIYRLQKFERSNQSTCINQRPLVKVGDLIE 795 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ED FT+IHI+E Sbjct: 796 KGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVFTSIHIEEFEV 855 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDILVGK+TPKGE+ +TPE Sbjct: 856 MARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPMTPE 915 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 EKLLRAIFGEKASDV+D+SLR+P GV+GT++DV+VF R G+E D R I+ ++++ K Sbjct: 916 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIEIDDRTRAIQNEEIERLAK 975 Query: 959 DLSEELQILEAGLFSRIRAVLVAGG-------------VEAEKLDKLPRDRWLELGLTDE 1005 D +E IL F+R++ +L+ ++ + L + R W + + D+ Sbjct: 976 DREDERAILNRATFNRLKDMLLGQVAAAAPKGIKKGVEIDEQVLADVERHEWWKFAVADD 1035 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 +Q QLE + QYD ++K E ++ K+ +GD+LAPGVLK+VKV++AVKR++QPGDK Sbjct: 1036 ARQQQLEAVKAQYDTAVKAIQEKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQPGDK 1095 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKG+IS+I P EDMP+ E+GTPVD VLNPLGVPSRMN+GQI ETHLG AA+G+G Sbjct: 1096 MAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAARGLG 1155 Query: 1126 DKINAMLKQQQEVAKL------REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 +I L +E E ++ ++ +DE+++ A+++R G Sbjct: 1156 KRIGEALDAWREANPNPEAGQPPEAVRELLKEIYGDNYAAEIDARNDEQIIDFAQSVRLG 1215 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 +P+ +PVFDGA E ++ ++L+L L SGQ+ L+DGRTG+ F+R VTVG Y+LKL+HLV Sbjct: 1216 VPMGSPVFDGAVEKDVTDMLRLAGLDESGQVTLFDGRTGDAFDRKVTVGMKYVLKLHHLV 1275 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAYTLQEMLTVKSDDV Sbjct: 1276 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVV 1335 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1336 GRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1375 >UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 Tax=Bacteria RepID=RPOB_METPP Length = 1375 Score = 1422 bits (3680), Expect = 0.0, Method: Composition-based stats. Identities = 872/1370 (63%), Positives = 1067/1370 (77%), Gaps = 33/1370 (2%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVF 57 YSYTE+KRIRK FGKR VL VPYLL++Q DS+ F+++D Q GL+AAF S F Sbjct: 6 PYSYTERKRIRKSFGKRENVLGVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAAFLSAF 65 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE---GTV 114 PI S++G E++Y+ + + +P FD +ECQ RG+TY+A +R KL+++IY+RE V Sbjct: 66 PIVSHNGFVEMKYIEFNMAKPAFDTRECQQRGLTYAAAVRAKLQMIIYDRETSTSQSKVV 125 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 K+IKEQEVYMGE+PLMTD G+F++NGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++A Sbjct: 126 KEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 185 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ EQIL FF F + D Sbjct: 186 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDNFRLMD 245 Query: 235 NKLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 + QME V +RLRGE A FD+ + G V VEK +RITARH R LE I VP +++ Sbjct: 246 SGAQMEFVADRLRGEIARFDLTDKAGAVIVEKDKRITARHTRALEASGTSFISVPEDFLV 305 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G+V+AK+ +D TGE+I AN EL+ LL KL +G K I+ L+TN+LD G YIS+TL Sbjct: 306 GRVLAKNMVDADTGEIIAKANDELTDSLLKKLRTAGIKDIQCLYTNELDMGAYISQTLAS 365 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D T D L+A V IYRMMRPGEPPT +A ++LF LF+SED YDLS VGRMKFN + R+ Sbjct: 366 DETADELAARVAIYRMMRPGEPPTEDAVQALFNRLFYSEDTYDLSRVGRMKFNARVGRDT 425 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 EG +L+ DDI+DV+K L+++RNG+GEVDDIDHLGNRR+R VGE+AENQ+R GL R+E+ Sbjct: 426 AEGRMVLANDDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLARIEK 485 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 486 AVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSAL 545 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL++YAQ NEYGFLETPYR+ Sbjct: 546 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRR 605 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V D VTD+I YLSAIEEG YVIAQAN+ LD++G +++LV+ R GES L S +++ YM Sbjct: 606 VIDSKVTDQIDYLSAIEEGKYVIAQANAGLDKDGKLIDELVSARESGESVLTSPERIQYM 665 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DV+ Q+VSV ASL+PFLEHDDANRALMGANMQRQAVP LR +K VGTG+ER AVDSG Sbjct: 666 DVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGVERVSAVDSG 725 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 AKRGGVV Y+D +RIVI+VN+ E GE G+DIYNL KY RSNQNT I+Q P V Sbjct: 726 TVVTAKRGGVVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVQR 785 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V GDV+ADG STD+GELALGQNM VAFMPWNGYNFEDSIL+SERVV +DR+T+IHI Sbjct: 786 GDQVGAGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTSIHI 845 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +EL ++RDTKLG EEIT DIPN+ E L +LDESGIVYIGAEV GD+LVGKVTPKGET Sbjct: 846 EELVVMARDTKLGSEEITRDIPNLSEQQLGRLDESGIVYIGAEVNPGDVLVGKVTPKGET 905 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 LTPEEKLLRAIFGEKASDVKD+SLRV G +GTVIDVQVFTR+G+++DKRA +I + +L Sbjct: 906 TLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQIIDDEL 965 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGG-------------VEAEKLDKLPRDRWLEL 1000 K+ + DL+++L+I+EA F RI +L ++ L + + W ++ Sbjct: 966 KRFRLDLNDQLRIVEADAFDRIEKLLAGKTANGGPNKLAKGTPIDKAYLASVDKYHWFDI 1025 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 D++ NQLE + ++ +H F+ E KR+K+TQGD+L GVLK+VKVYLAVKRR+ Sbjct: 1026 RPADDDIANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRL 1085 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 QPGDKMAGRHGNKGV+SKI P+EDMPY +GTP DIVLNPLGVPSRMN+GQ+LE HLG A Sbjct: 1086 QPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGWA 1145 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 AKGIG +I +L+Q+ ++A +R+F+ Y+ + L+ SD E+ +A NL +G+ Sbjct: 1146 AKGIGQRIGDLLQQEAKIADVRKFLDELYNKSGGKSEG--LNGLSDAEITEMATNLAQGV 1203 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPT----------SGQIRLYDGRTGEQFERPVTVGYM 1230 P ATPVFDGA E EI+ ++ L Q L+DGRTG+ FERPVTVGYM Sbjct: 1204 PFATPVFDGATEEEIRAMMHLAYPDEIAAAKGLNATRTQATLHDGRTGDAFERPVTVGYM 1263 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 ++LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEM Sbjct: 1264 HVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEM 1323 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LTVKSDDVNGRTK+Y++IV G H +E GMPESFNVL+KEIRSLGI+IELE Sbjct: 1324 LTVKSDDVNGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGIDIELE 1373 >UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 Tax=Bacteria RepID=RPOB_MYXXD Length = 1408 Score = 1404 bits (3635), Expect = 0.0, Method: Composition-based stats. Identities = 778/1381 (56%), Positives = 1015/1381 (73%), Gaps = 46/1381 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M R+RK F K +++D+P L++IQ S++KF++ D GL+ F+SV Sbjct: 1 MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 FPI+ ++ S L++VSY L P +DV EC RG+TYSAP++V +RLV+++++ G ++ Sbjct: 61 FPIRDFNETSSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY--------------TTEQI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT+++RAL +TE+I Sbjct: 181 RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI 240 Query: 221 LDLFFEKVIFEI-RDNKLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLE 278 L+ ++ + + + + E L G+ A+ DI G++ V+K R+ T I++LE Sbjct: 241 LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLE 300 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +K + + + + KV A D ++E+ G ++ N E++ + + +L + G K + LF Sbjct: 301 AAKMKTLPIDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFI 360 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 ++L+ GPY+ ETL +D +++EIYR +RPG+PPT E A +LF NLFF+ +RYDLS Sbjct: 361 DNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS 420 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 VGR+K N EE IL+K DI++V++ LID++NGKG +DDIDHLGNRR+R+VGE Sbjct: 421 KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE 480 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFMDQ Sbjct: 481 LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT 540 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SLS Y Sbjct: 541 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY 600 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ NE+GF+ETPYRKV GVVT+++ + SA+EE + IAQAN+ D++G F LV+ R Sbjct: 601 ARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRR 660 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 GE + VD MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP LR P Sbjct: 661 GGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP 720 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLTKYT 757 LVGTG+E VA DSGVT VA+R G+V+ VDA RIV+K + + + +DIYNL KY Sbjct: 721 LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQ 780 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RSNQNTC+NQ P +S G+ V +GDV+ADGP+T+ GELALGQN+ VAFMPW GYNFEDSIL Sbjct: 781 RSNQNTCLNQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL 840 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 +SER++++D FT+IHI+E C++RDTKLG EEIT DIPNVGE AL LDESGI+ IGAEV Sbjct: 841 ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV 900 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GD+LVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GV GTVI+ +VF+R Sbjct: 901 KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK 960 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK------ 991 GVEKD+RA +IE M+ + KD ++E+++L+ F RIR ++ V+ + +D Sbjct: 961 GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILL 1020 Query: 992 -------------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 +P W E+ + D ++L + +E K + K +I + Sbjct: 1021 KKGDILDDELLSTVPYKYWGEISVGDP-LDSRLRDILRNLEETKEAVKLAFGEKIARIKK 1079 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S+I P EDMPY E+G PVDIVL Sbjct: 1080 GDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVL 1139 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQILETHLG AAKG G+ + ++ ++E ++ Y +D Sbjct: 1140 NPLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIY---SDPAFG 1196 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 L DEE+ +L ++G+ +ATPVFDGA+E EI LL G LP SGQ+ L+DGRTG Sbjct: 1197 EFLDKLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTG 1256 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWA+ Sbjct: 1257 EPFDQNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAM 1316 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE LTVKSDDV GRT+MY+ IV G++ +E G+PESFNVLLKE++SL +++E Sbjct: 1317 EAYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVE 1376 Query: 1339 L 1339 L Sbjct: 1377 L 1377 >UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Tax=Bacteria RepID=RPOB_ANAD2 Length = 1422 Score = 1402 bits (3628), Expect = 0.0, Method: Composition-based stats. Identities = 781/1387 (56%), Positives = 1025/1387 (73%), Gaps = 50/1387 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M + RIR++FGK ++ ++P L++IQ S+ KF++ D GL+ F+SV Sbjct: 1 MATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 FPI+ ++ S L++VSY L +P +DV EC RG+TYSAP++V +RLV+++++ G ++ Sbjct: 61 FPIKDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT+NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE--------------QI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT++LRAL T + +I Sbjct: 181 RIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI 240 Query: 221 LDLFFEKVIFEIR-DNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQL 277 L +++ I K + +LVP+ L+G+ A+ DI + +V V+K R+ T I++L Sbjct: 241 LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKL 300 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 +K + V E + K+ A+D +DE+TGE++ N E++ + +L + + LF Sbjct: 301 VAAKMKSLPVEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLF 360 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 ++L+ P + +TL D + A++EIYR +RPG+PPT E A +LF NLFF+ +RYDL Sbjct: 361 IDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDL 420 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRS 455 S VGR+K N EE + +L+K DI++V++ LID++NGK +VDDIDHLGNRR+R+ Sbjct: 421 SKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA 480 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VGE+ ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFM Sbjct: 481 VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFM 540 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLI SL Sbjct: 541 DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASL 600 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 S YA+ NEYGF+ETPYRKV G VTDE+ + SA+EE ++IAQAN+ +D++G+F E V Sbjct: 601 STYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVW 660 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 CR +GE D+VD MDVS Q+VSV ASL+PFLE+DDANRALMG+NMQRQAVP LR Sbjct: 661 CRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT 720 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLT 754 PLVGTG+E VA DSGVT VAKR GVVQ VDASRIV+K + +DIYNL Sbjct: 721 QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLI 780 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 KY RSNQNTCINQ P V GE V++GDV+ADGP+T++GELALGQN+ VAFMPW GYNFED Sbjct: 781 KYQRSNQNTCINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFED 840 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 SIL+SER+++ED FT++HI+E CV+RDTKLG EEIT DIPNVGE AL LDESGI+ IG Sbjct: 841 SILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIG 900 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 AEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GVSGTVI+ +VF Sbjct: 901 AEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF 960 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 +R GVEKD+RA IEEM+ + KD ++E++I++ F +IR +L+ V A +D Sbjct: 961 SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGE 1020 Query: 995 DRWLELGLTDE------------------EKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + + D+ + Q+ ++ E ++E K + K ++ Sbjct: 1021 QLLKKGDVLDDALLDTVPQRYWGEIAVAGDVQDLARKIIENFEEQKELVKLLFGEKIGRL 1080 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 +GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S++ P ED+PY E+GTPVDI Sbjct: 1081 KKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDI 1140 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA--- 1153 VLNPLGVPSRMN+GQILETHLG AA+ +G ++ M++++ LR+ ++ A+ Sbjct: 1141 VLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGP 1200 Query: 1154 -DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 R + ++E+ +L + LR+GM +ATPVFDGA+E E+K L++ G + Q L Sbjct: 1201 VGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEG--SATLQSIL 1258 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 +DGRTGE F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GE Sbjct: 1259 FDGRTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGE 1318 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 MEVWA+EAYGAAY+LQE LTVKSDDV GRT+MY+ IV G + +E G+PESFNVL+KE++S Sbjct: 1319 MEVWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQS 1378 Query: 1333 LGINIEL 1339 L +++EL Sbjct: 1379 LALDVEL 1385 >UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Tax=Neisseriaceae RepID=RPOB_NEIG1 Length = 1392 Score = 1398 bits (3619), Expect = 0.0, Method: Composition-based stats. Identities = 888/1393 (63%), Positives = 1094/1393 (78%), Gaps = 56/1393 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ----DPEGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR VL+VP+LL+ Q+DS+ KF++ D GL+AAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + L++V Y LGEP+FD+ ECQ+RG+TY+APLR ++RLVI ++EA + TVK+ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKE 120 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 ++E EVYMGEIPLMT +G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 121 VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 180 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDFEFDPKD L+ RIDRRRK+P TI+L+AL Y EQILD+F++K F + N Sbjct: 181 IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNG 240 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +Q +LV RL+GETA DI + G V V KG+RITA++IR + + ++V E + GK Sbjct: 241 VQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQESLLGK 300 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D ID TGE++ +AN E++ +LLAK +G K I TL+ N+LD G YIS TLR D Sbjct: 301 ALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDE 360 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T R +A V IYRMMRPGEPPT EA E LF LFFSED YDLS VGRMKFN +++ Sbjct: 361 TAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKLS 420 Query: 416 GSG----------------------ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + +LS +DI+ + L+++RNG GEVDDIDHLGNRR+ Sbjct: 421 EAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV 480 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 RSVGE+ ENQFR GL RVERAVKERL+ + + LMP D+INAKP+SAA+KEFFGSSQLSQ Sbjct: 481 RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ 540 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN Sbjct: 541 FMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 600 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 SLSVYA+TN+YGFLETPYR+V DG VT+EI YLSAIEEG YVIAQAN++LD +G+ + DL Sbjct: 601 SLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDL 660 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 VTCR KGE+ + + D+V YMDV+T QVVSV ASLIPFLEHDDANRALMGANMQRQAVP L Sbjct: 661 VTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL 720 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 R +KP+VGTG+ER+VAVDS VA+RGGVV+YVDA+R+VI+V++DE GE G+DIYNL Sbjct: 721 RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNL 780 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 K+TRSNQ+T INQ P V G+ ++RGD++ADG STDLGELALGQNM +AFMPWNGYN+E Sbjct: 781 VKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYE 840 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 DSIL+SE+V +DR+T+IHI+EL V+RDTKLG E+IT DIPN+ E ++LDESGIVYI Sbjct: 841 DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI 900 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GAEV GD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLR+P G+SGTVIDVQV Sbjct: 901 GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV 960 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG---------- 983 FTR+G+++DKRA I + +LK+ + DL+++L+I + F RI ++V Sbjct: 961 FTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLTK 1020 Query: 984 ---VEAEKLDKLP-RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + E L LP R W ++ LTDE+ QLE + + + E ++ E K++K+TQG Sbjct: 1021 GSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKKLTQG 1080 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L PGV K+VKV++A+KRR+Q GDKMAGRHGNKGV+S+I P+EDMPY +G PVDIVLN Sbjct: 1081 DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN 1140 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQILE HLG AAKGIG++I+ MLK++++ +LREF+ + Y+ +K Sbjct: 1141 PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGELREFLNKLYN---GSGKKE 1197 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG----------- 1208 DL + +DEE++ LA NLRKG A+PVFDGAKE+EI+E+L L Sbjct: 1198 DLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGFNDSK 1257 Query: 1209 -QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 QI LYDGR+GE F+R VTVG M+ LKL+HLVD+KMHARSTG YSLVTQQPLGGKAQFGG Sbjct: 1258 TQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGG 1317 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY+NIV G H+++ GMPESFNVL+ Sbjct: 1318 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLV 1377 Query: 1328 KEIRSLGINIELE 1340 KEIRSLG++I+LE Sbjct: 1378 KEIRSLGLDIDLE 1390 >UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 Tax=Bacteria RepID=RPOB_SPHWW Length = 1455 Score = 1393 bits (3606), Expect = 0.0, Method: Composition-based stats. Identities = 772/1434 (53%), Positives = 1000/1434 (69%), Gaps = 97/1434 (6%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY--GLEAAFRSVFPI 59 T KKRIRK FG +V+ +P L+ +Q +S+++F+ P Y GLE RSVFPI Sbjct: 5 AVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRSVFPI 64 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTVKDI 117 + ++G +EL +V Y L +P +D EC+ RG+TY+AP+RV LRL+++E + +V DI Sbjct: 65 RDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRSVLDI 124 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ+VYMG++PLMT+NGTF+INGTERVIVSQ+HRSPGV FD D+GKTH+SGK L+ AR+I Sbjct: 125 KEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVI 184 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN-----YTTEQILDLFFEKVIFEI 232 PYRGSWLDFEFD KD + VRIDR+RKLP T +LRAL ++ + V Sbjct: 185 PYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALGDAVIEVNPDKGKFEAGDIVAISG 244 Query: 233 RDNKLQMELVPERLRG-ETASFDIEANGKVYVEKGRR-------------------ITAR 272 + +++ V RL E + I G + +G + R Sbjct: 245 VNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILNYFYR 304 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE------------------------ 308 R + ++ + E G+ A D ++ TGE Sbjct: 305 TQRFVRGENGWKVPFVAENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAGKDGLET 364 Query: 309 ------------------------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + A E++ + L L ++G ++ L + + G Sbjct: 365 LLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVDLLDIDHVSTG 424 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 P+I TL+ D DR AL EIYR+MRPGEPPT+E AE+LF LFF +RYDLSAVGR+K Sbjct: 425 PWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAVGRVK 484 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + + L +DI+ V+K L+D+++GKGE+DDID+LGNRR+RSVGE+ ENQ+ Sbjct: 485 LNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQY 544 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 RVGL+R+ERAVKER+S D+ T MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+ Sbjct: 545 RVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEV 604 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSL+ +++ N+Y Sbjct: 605 THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKY 664 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 GF+ETPYRK+ DG VT+E+ YLSA+EE + IAQAN+ LD EG FVEDL++ R GE + Sbjct: 665 GFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISAREAGEFLM 724 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 RD V MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +RA+ P VGTGM Sbjct: 725 APRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGM 784 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E VA DSG AKR G+V VDA+RIV++ + G++G+DIY L K+ RSNQ+TC Sbjct: 785 EETVARDSGAAIAAKRSGIVDQVDATRIVVRAT-GAVDAGKSGVDIYTLMKFQRSNQSTC 843 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 INQ P V +G+ V GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ Sbjct: 844 INQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVK 903 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 +D FT+IHI E ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDIL Sbjct: 904 DDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILC 963 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 GK+TPKGE+ +TPEEKLLRAIFGEKASDV+D+SLR+P GVSGTV+DV+VF R G++KD+R Sbjct: 964 GKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDKDER 1023 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-------------GVEAEKLDK 991 A+ IE ++ + KD +E IL ++R++ +L+ + E L + Sbjct: 1024 AMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKGSEINEELLAE 1083 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + + W + + D+ +Q LE + QYD+ KK E + K+ +GD+L PGVLK+VK Sbjct: 1084 VEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPGVLKMVK 1143 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V++AVKR++QPGDKMAGRHGNKGVIS+I P EDMP+ E+GTPVDIVLNPLGVPSRMN+GQ Sbjct: 1144 VFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQ 1203 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY------DLGADVRQKVDLSTFS 1165 I ETHLG AA+G+G ++ + L+ +E + D+ S Sbjct: 1204 IFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEYHADIEGRS 1263 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 ++++ +A L+ G+P+ATPVFDGA+EA++ E+L+ L SGQ+ L+DGRTG+QF+R V Sbjct: 1264 TDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFDGRTGDQFDRKV 1323 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 TVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAY Sbjct: 1324 TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY 1383 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TLQEMLTVKSDDV GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1384 TLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1437 >UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Tax=Proteobacteria RepID=RPOB_DESDA Length = 1378 Score = 1379 bits (3569), Expect = 0.0, Method: Composition-based stats. Identities = 726/1358 (53%), Positives = 947/1358 (69%), Gaps = 32/1358 (2%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE-----GQYGLEAAFRSVFPIQSYSGNSE 67 K FGK L +P+LL++Q+DS++KF+++ GLE F +VFPI+ ++ + Sbjct: 6 KQFGKIKISLPIPHLLNLQIDSYEKFLQEGVPEAERRPDEGLEGVFHTVFPIEDFNKTAS 65 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA--PEGTVKDIKEQEVYMG 125 L++VSY +GEP +D EC +G+TY AP+R+K+RLV+Y+ + T++DIKEQ++Y G Sbjct: 66 LEFVSYEIGEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQDIYFG 125 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 +PLMT+ GTF+INGTERVIV+QL RSPG+ F+ D GKTH+S KVLY+ R+IP RGSWLD Sbjct: 126 TLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLD 185 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD-NKLQMELVPE 244 F+FD KD L+VRIDRRRK+PATI+ +A+ + EQILD F+ + + + + N + E+ E Sbjct: 186 FDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYTQETYRLEERNTIFWEVRKE 245 Query: 245 RLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 R + A DI ++ G V V+ G+ IT R R + + ++ IE+ + + G +A D D Sbjct: 246 LYRKDNAYADIVDSEGNVIVKAGKPITKRSWRLICEAGIEAIEMRPDTLDGMFLAGDVAD 305 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 TGEL+ A E++ LL ++ +G R+ L T D I +TL +D D+L A Sbjct: 306 PKTGELLAEAADEITPGLLDRMRDAGINRVSVLHTKGNDTSSSIRDTLMLDRIPDQLKAQ 365 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 EIYR +RP PPT E A S F+NLF + D YDLS VGR K N+ L +E L+ + Sbjct: 366 EEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLSLDEPSDLRTLTDN 425 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 DI+ +K L+ +++ G DDIDHLGNRR+R VGE+ ENQ+R+GLVR+ERA+KER+SL + Sbjct: 426 DILTAIKVLVHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSLQE 485 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 + TLMP D+IN KP++A +KEFFG+SQLSQFMDQ N LSE+THKRR+SALGPGGLTRERA Sbjct: 486 ISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRERA 545 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N+YGF+ETPY V +G VTDE+ Sbjct: 546 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYHVVREGRVTDEV 605 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 +L A EG+ V+AQAN+ LDE+G+ V++ VT R KGE + RD+V MD+S Q+VS+ Sbjct: 606 LHLDASREGDQVVAQANALLDEQGNLVDEFVTVRVKGEVEMRHRDEVTLMDISPSQMVSI 665 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 A+LIPFLEHDDANRALMG+NMQRQAVP LR++KPLVGTGME VA DSG VA G Sbjct: 666 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVAPADGK 725 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 ++YVDA RIV+ E ++Y + G+ Y+L KY +SNQN+C Q P G+ V++G +L Sbjct: 726 IEYVDADRIVVA-YEGDVYKKQGGVRAYDLLKYHKSNQNSCFGQKPSCHPGQIVKKGQIL 784 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 ADGP D GELALG+N+ VAFMPW GYN+EDSIL+SER V+ED FT+IHI+E V+RDT Sbjct: 785 ADGPGIDDGELALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVVARDT 844 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 KLGPEEIT DIPNV E L LDESGI+ IGA V DILVGK+TPKGETQLTPEEKLLR Sbjct: 845 KLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEEKLLR 904 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 AIFGEKA DVK++SL+VP GV GT+IDV+VF R EKD R L IE + ++ Sbjct: 905 AIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIEGHDTAVLDQKEADH 964 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG-------------------LTD 1004 ++ L + + +V V A K + +E G Sbjct: 965 MRALTDRTRALLIPHVVGKQVAASLPGKKKGEVLVEAGAALTEEMLASLPVKKLSGLFKS 1024 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 +E + + ++ + YD+ ++KR K+T+GDDL PGV+K+VKV++A+KR++ GD Sbjct: 1025 KEVNDAVAEILKPYDQQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKLSVGD 1084 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGV+S I P EDMP+ +G PVDIVLNPLGVPSRMNIGQI+ETHLG AK + Sbjct: 1085 KMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAKEL 1144 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G ++ +L + LR+ ++ + + + DEE LR G+ T Sbjct: 1145 GRQLAELLDSGAAMQVLRDEVKSIF---SSDDINALVDEMDDEEFKASVSKLRNGIVTKT 1201 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 PVFDGA E EI ++ L G+ LYDGRTGE F+ VT G MYMLKL+HLVD+K+H Sbjct: 1202 PVFDGATEEEIWSWMERAGLANDGKTTLYDGRTGEAFKNRVTTGVMYMLKLHHLVDEKIH 1261 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAY LQE LTVKSDDV GR KM Sbjct: 1262 ARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVKM 1321 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 Y+ IV G++ +E G+PESFNVL+KE+ SLG+N+ L E Sbjct: 1322 YEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQE 1359 >UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Tax=Bacteria RepID=RPOB_DESAH Length = 1401 Score = 1333 bits (3449), Expect = 0.0, Method: Composition-based stats. Identities = 710/1397 (50%), Positives = 947/1397 (67%), Gaps = 59/1397 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M S KRIRK+FG + +V+D+P L+ +Q SF++F++++ + G+ F+SV Sbjct: 1 MTGSLLASKRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV-- 114 PI+ ++G S L+YVSY GE ++EC RG+TY P+ + +RLV+Y+ + G Sbjct: 61 LPIKDFTGTSSLEYVSYSFGETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVTSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +DIKEQE+Y G IPLMT GTF+INGTER +VSQLHRS GVFFD DKGK+HSSGK++Y A Sbjct: 121 RDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSGVFFDHDKGKSHSSGKIIYTA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIP RGSW+D E DPKD + +RIDRRRK P TI+ +A YT E IL F++K +D Sbjct: 181 RIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVKKD 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 L E P+ L+ ASFDI G+ V+KGR T R ++QL+ +K I + E I Sbjct: 241 GILFKEFNPDNLKRNRASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISEEDI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ A + T E++ A + ++L K++ +G L+ + + +TL Sbjct: 301 IGRGFATSVVHPETEEILAKAGSLIDPEVLEKIADAGITEFSILYVDTYSSDS-MRKTLA 359 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 VD R AL+EIYR +RPG P T E A+ ++LFF YDLS VGR+K N L Sbjct: 360 VDKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPAYYDLSNVGRLKMNHRLGMS 419 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L ++DI+ L+++++ +G VDDIDHLGNRR+R+VGE+ ENQ+R+GLVR+E Sbjct: 420 TGIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRME 479 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 RA+KER+S+ ++D +MP D++N KP+SA V+EFFG+SQLSQFMDQ NPLSE THKRR+SA Sbjct: 480 RAIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSA 539 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGLTRERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SL YA+ N++GF+ETPYR Sbjct: 540 LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYR 599 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 DGVV+ +I +LSA EE + IAQAN+ LD++GH + DLVT R GE + +++ +++ Sbjct: 600 IAKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDLVTSRVGGEFEMVAKNDIEF 659 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 MDVS Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +R++ PLVGTG+E VA DS Sbjct: 660 MDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVARDS 719 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 GV VA+ G+V VDA RIV+K E+ + + IY +K+ RSNQNTC N P V Sbjct: 720 GVAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRPIVK 779 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G+ V +G+V+ADGPST++GELALG+N+ VAFMPW GYN+EDSILVSER+V+E +T++H Sbjct: 780 KGDAVRKGEVIADGPSTEMGELALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYTSVH 839 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 ++E V+RDTKLG EEIT DIPN GE AL LD+SGI+ +GAEV GDILVGK+TPKGE Sbjct: 840 VEEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRLGAEVKPGDILVGKITPKGE 899 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 TQL+PEEKLLRAIFGEKA DVKD+SLRVP GV G V +VF+R G+ KD R IE+++ Sbjct: 900 TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIEDLE 959 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGG------------------VEAEKLDKLPR 994 +++ +KD +E++I+ + R+ +L V + + Sbjct: 960 IEKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEGISL 1019 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + L + D + E+ + + + + + +GDDL PGVLK++K+ + Sbjct: 1020 TDLMGLTVEDSSLTEMAHVILEKAETQIKKARENFNNQASRYEKGDDLPPGVLKLIKINV 1079 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A+KR + GDKMAGRHGNKGV+S+I P+ D+PY E+G VD+VLNPLGVPSRMN+GQILE Sbjct: 1080 AMKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVDMVLNPLGVPSRMNVGQILE 1139 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVA--------------------------------KLR 1142 HLG AA+G+G +I+ ++ +++ Sbjct: 1140 IHLGCAARGLGRQIDDLIYEKKTDELRARIKRIFTTPLIKTGERANKDKTHYDFSSHYTV 1199 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 E +++ + D E + A + G+ +ATPVFDGA E+EIK L+ Sbjct: 1200 EKSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGAAESEIKSLISYA 1259 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 L SGQ LYDGRTGE F++P+TVG MYMLKL+HLVDDK+HARS G YSLVTQQPLGGK Sbjct: 1260 GLDPSGQSTLYDGRTGEPFDKPITVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGK 1319 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 AQFGGQR GEMEVWA+EAYGAA+ LQE +TVKSDD+ GRT+MY+ IV G + +EPGMPES Sbjct: 1320 AQFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTRMYEKIVKGQNVLEPGMPES 1379 Query: 1323 FNVLLKEIRSLGINIEL 1339 F VL KE++SLG++I L Sbjct: 1380 FRVLTKELQSLGLDINL 1396 >UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFV8_THEYD Length = 1312 Score = 1322 bits (3420), Expect = 0.0, Method: Composition-based stats. Identities = 716/1361 (52%), Positives = 963/1361 (70%), Gaps = 84/1361 (6%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSY 62 + R R +FGK P +++VPYLL Q SF KF+++D GL++A SVFPI Y Sbjct: 3 KPLRERINFGKVPPLVEVPYLLEFQRKSFDKFLQKDIPPEERADEGLQSALNSVFPISDY 62 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT-VKDIKEQE 121 +G + ++++SY +GEP EC ++G+TYS P+++K+RL I++++ +K+ +EQE Sbjct: 63 NGTTTIEFISYSVGEPKLTPYECMVKGLTYSVPIKMKVRLNIWDKDEEGRKFLKESREQE 122 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V++G++P+MT+ G+F+ING ERVIVSQLHRSPGV+F D+ K+ SG+ LY+ARIIP RG Sbjct: 123 VFLGDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPVRG 182 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 SWLDFEFD KD L+VRID+R+KLPATI+L+AL YT E +L +F+ I+D + Sbjct: 183 SWLDFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLRIFYPIEEIRIKDETTYTRV 242 Query: 242 VPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 V + L G DI + V++G +IT ++++++ ++ I + I G++ Sbjct: 243 VSDILTGVRTKVDICSADGKDIIVKEGSKITRYSLKKMKELGIQEIPISKSEIIGRITLS 302 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 D +D TGE+I +N E++ + ++ + +++E LF +++++ P + ETL D ++ Sbjct: 303 DIVDPETGEVIVDSNKEITEESFHRIISARIQKLELLFIDNINYLPSLRETLLTDKVENK 362 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL EIY+ +RPGEP T EAAE LF LFF RYDLS+VGR+K N+ L + + Sbjct: 363 KHALREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSSVGRLKLNQKLGLDIPLDVRV 422 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+ DII+++K L+++R GKGEVDDIDHLGNRR+R VGE+ ENQFR+GLVR+ERA++E++ Sbjct: 423 LTDKDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIREKM 482 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 ++ D++T MP D+IN KP+ AAVKEFF +SQLSQFMDQ NPLSEITHKRR+SALGPGGLT Sbjct: 483 TITDVETAMPHDVINTKPVMAAVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLT 542 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SL+ YA+ N++GF+E+PYRKV +G V Sbjct: 543 RERAGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINDFGFIESPYRKVVNGKV 602 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 T+++H+LSA+E NYVIA+A + +DEEG+ + + V+ R KG+ + SR++V+YMDVS +Q Sbjct: 603 TNDVHFLSALESENYVIAEATTPVDEEGNIIGETVSARVKGDFKMVSREEVEYMDVSPKQ 662 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VS+ ASLIPFLE+DDANRALMG+NMQRQAVP + + P+VGTGME A DSG VAK Sbjct: 663 IVSLSASLIPFLENDDANRALMGSNMQRQAVPLIHTEAPIVGTGMELYAARDSGWLVVAK 722 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 R G+V+ VD+ RIVI+V E+ G+DIYNL K+ +SNQ TC+ Q P V +G+ VER Sbjct: 723 RAGIVENVDSRRIVIRVTEE-----GGGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVER 777 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 G +LADGP D GELALG+N+ VAFMPW GYNFED+ILVSER+V+ED +T+IHI E Sbjct: 778 GTILADGPCMDNGELALGRNVLVAFMPWGGYNFEDAILVSERLVKEDVYTSIHIDEFEIE 837 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 RDTKLGPEEIT +IPNV E L LDE GI+ IGA+V GDILVGKVTPKGE LTPEE Sbjct: 838 CRDTKLGPEEITREIPNVNEELLKNLDEDGIIRIGAKVKAGDILVGKVTPKGERVLTPEE 897 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 KLL AIFGEKA DVK+S L VP G+ G VIDV++ TR G EK +RA IEE ++K+ ++D Sbjct: 898 KLLYAIFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRANAIEEEEIKRIERD 957 Query: 960 LSEELQILEAGLFSRIRAVLVAGGV------------------EAEKLDKLPRDRWLELG 1001 +E++IL+ SRIR +L + + ++ L ++ L+L Sbjct: 958 REDEIRILKETKASRIRKILKGKIILEDVKKGEKIICPKGKALTEKVVNLLDVNQLLKLK 1017 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + D + + ++ ++ ++ ++ + K K +I +GD+L PGV +IVKVY+A+KR+IQ Sbjct: 1018 VEDPDVKAEVSRVNKEVEQNIKQIYAKYNEKIERIKKGDELPPGVNQIVKVYIAMKRKIQ 1077 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGV+S I P EDMPY E+GTPVDIVLNPLGVPSRMN+ Sbjct: 1078 VGDKMAGRHGNKGVVSMILPEEDMPYLEDGTPVDIVLNPLGVPSRMNV------------ 1125 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G + L + G+ Sbjct: 1126 ---GQILETHLGLAAKAL---------------------------------------GLY 1143 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +A+PVF+GAKE EIKE+ + PT+GQ+ LYDG+TGE FERPVTVGYMYMLKL+HLV D Sbjct: 1144 VASPVFEGAKEDEIKEMFRKVGYPTTGQVTLYDGKTGEPFERPVTVGYMYMLKLHHLVAD 1203 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAYTLQE LTVKSDD+ GR Sbjct: 1204 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDITGR 1263 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 T+MY+ IV G+ +EPG+PESFNVL+KE++SL ++++L ++ Sbjct: 1264 TRMYEAIVKGHPVLEPGVPESFNVLIKELQSLCLDVDLLEK 1304 >UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria RepID=C1F3Y3_ACIC5 Length = 1496 Score = 1319 bits (3414), Expect = 0.0, Method: Composition-based stats. Identities = 733/1473 (49%), Positives = 960/1473 (65%), Gaps = 152/1473 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYS-- 63 R R DF K P + +P L+ +Q S+++F++ D GL++ F SVFPI + Sbjct: 9 RSRLDFSKIPTSIKIPNLIEVQRRSYERFLQMDKLPTEREDNGLQSVFTSVFPIADFRNI 68 Query: 64 ----------GNSELQYVSYR--------------------------------------- 74 GN E + + Sbjct: 69 SQLDFVDYSIGNWECKCGHLKGLHHLRTACTHCGNMVITDPFHPGDVLCQKCGTYNKNTP 128 Query: 75 -----LGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE--GTVKDIKEQEV 122 G+P +D EC+ RG+T+SAPL+V +RL IY+++ T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDQAECEERGMTFSAPLKVTVRLTIYDKDPETGAKTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G+IPLMT NGTF++NGTERVIVSQLHRSPGVFF+ ++ + + +IIPYRGS Sbjct: 189 FFGDIPLMTQNGTFIVNGTERVIVSQLHRSPGVFFE------TANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL + E+IL F+ +++D KL + Sbjct: 243 WVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLKSDEEILKTFYTVDRIQVKDGKLYWTV 302 Query: 242 ----VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 P L G + + NG+ V GR+ITA ++ + + ++ IE+ + G + Sbjct: 303 AEAGTPTHLLGAKPAHAVVHNGQEIVHSGRKITASVLKAIREAKLEQIEIDTTDLDGAMT 362 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 A D ID TGE++ AN EL+ D L K+ ++G +E F D G I+ TLR D Sbjct: 363 AADVIDTETGEVLLEANHELTPDKLHKIVEAGIPTVEVFFPERDDVGNIITNTLRRDSVR 422 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EI 414 AL+EIYR +RPG+PPT + A +LFE +FF +YD S VGR+KFN L Sbjct: 423 KPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYENAEETP 482 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 L+ D ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+ERA Sbjct: 483 LDHRTLTAGDFYSTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERA 542 Query: 475 VKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 +KE++S ++ T MP D+INAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 543 IKEKMSVYQEMSTAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSAL 602 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS +A+ NEYGF+E+PYR+ Sbjct: 603 GPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRR 662 Query: 594 VTDGVVTDEI------------------------------------------HYLSAIEE 611 V DG V D + YLSA EE Sbjct: 663 VRDGQVLDFVAVTNAGESGLRVGDYLEKAEALKLNDKLRAEKKRIIEFEPFSFYLSAWEE 722 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + IAQAN LDE H VEDLV R +G L +R++VDY+DVS +Q+VSV ASL+PFL Sbjct: 723 DRHTIAQANVKLDENKHIVEDLVNARRQGNFVLVNREEVDYVDVSPKQLVSVAASLVPFL 782 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMGANMQRQ+VP L ++ PLVGTGME A DSG +A+R GVV VD+ R Sbjct: 783 EHDDANRALMGANMQRQSVPLLVSEAPLVGTGMEGVTARDSGAVILARRNGVVDSVDSER 842 Query: 732 IVIK---VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I+++ + E G DIY L K+ RSNQNTCINQ P V G+ V +G V+ADGP Sbjct: 843 IIVRVEGEHHPTQLSREVGSDIYQLIKFKRSNQNTCINQKPIVRKGDRVLKGQVIADGPC 902 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 T+ GEL LG+N+ VAFMPW GYNFED+IL+SE++V+ED +T++HI+E +RDTKLGPE Sbjct: 903 TEQGELGLGRNVLVAFMPWRGYNFEDAILISEKLVKEDYYTSVHIEEFEIEARDTKLGPE 962 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 EIT DIPNV E AL LDESGI+ IGA+V DILVGKVTPKGETQLTPEEKLLRAIFGE Sbjct: 963 EITRDIPNVSEHALRDLDESGIIRIGAKVKHNDILVGKVTPKGETQLTPEEKLLRAIFGE 1022 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 KA DV+D+SL P G+ GTV+DV++F+R G EKD+RA +IE Q+ + +K+L +E++IL Sbjct: 1023 KAGDVRDASLTCPPGIEGTVVDVRIFSRKGQEKDERAKQIEAEQVAKLEKNLEDEIRILT 1082 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWL----------------------ELGLTDEE 1006 R+ A+L V A+ D+ R L D Sbjct: 1083 DERLKRLEAILGGKVVLADLHDERTNKRLLVKDAVLDRDAIERISTRNLKRIRYADKDPR 1142 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q++++ E K + K+ +GD+L+PGV+K+VK+Y+A+KR++ GDKM Sbjct: 1143 VNEQIDEIEEMTSRQIDVLRKITNERIAKLQKGDELSPGVIKMVKIYIAMKRKLSVGDKM 1202 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKGVI++I P EDMPY +GTPV+IVLNPLGVPSRMN+GQILETHLG AA +G Sbjct: 1203 AGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHDLGV 1262 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 ++ A++KQ Q+ +RE I+ + A + Q ++ DE+++R+ + +G+ T V Sbjct: 1263 QVAAIVKQHQDANVIREVIKERFKGTAVINQLIE---LEDEQLLRVGAGMARGIWFGTAV 1319 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 FDGAKE EIK LL+ LPTSG+ +L+DG TGE FE+PVTVG++YMLKL+HLVDDK+HAR Sbjct: 1320 FDGAKEEEIKALLESAGLPTSGKTKLFDGMTGEAFEQPVTVGFIYMLKLSHLVDDKIHAR 1379 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 S G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+Y+ Sbjct: 1380 SIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYE 1439 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 AIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1472 >UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 Tax=cellular organisms RepID=RPOB_ACIBL Length = 1489 Score = 1295 bits (3351), Expect = 0.0, Method: Composition-based stats. Identities = 732/1475 (49%), Positives = 960/1475 (65%), Gaps = 154/1475 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYS-- 63 R R+DF K P + +P L+ +Q S+ +F++ D GL+A F+SVFPI + Sbjct: 9 RNRQDFSKIPATIQIPNLIEVQKRSYDRFLQMDLLPSERDDAGLQAVFQSVFPITDFRNV 68 Query: 64 ----------GNSELQYVSYR--------------------------------------- 74 GN E + + Sbjct: 69 SQLEFVDYAIGNWECKCGHLKGLHHLRTTCKNCGATVVTDPFHPGDVLCHKCGTFNANTP 128 Query: 75 -----LGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYER--EAPEGTVKDIKEQEV 122 G+P +DV EC+ RG+TYSAPL+V +RL I+++ E T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDVAECEERGMTYSAPLKVTMRLTIFDKDPETNNRTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G++PLMT NGTF+INGTERVIVSQLHRSPGVFF+ ++ + + +IIPYRGS Sbjct: 189 FFGDVPLMTQNGTFIINGTERVIVSQLHRSPGVFFE------TANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL T E IL F+ ++D KL L Sbjct: 243 WVEFEYDQKNILYVRIDRKRKFLGTIFLRALGLRTDEDILRTFYTVDRIAVKDKKLYWTL 302 Query: 242 -----VPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 P L G S I NG+ GR++TA +++++K + +E+ + + G Sbjct: 303 EPGIERPTNLVGLKLSHAIKAKNGEEVAHSGRKVTASVLKEIQKHKISELEIELGDLEGA 362 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 VA D ID +TGE++ AN EL+ D L+K+ +G + F D G IS TLR D Sbjct: 363 YVASDVIDTNTGEVLLEANQELTADKLSKMIDAGIGEVNVFFPERDDVGTVISATLRRDS 422 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR---E 412 AL+EIYR +RPG+PPT + A +LF +FF +YD S VGR+KFN L Sbjct: 423 VKTPQEALIEIYRKLRPGDPPTLDTATALFHGMFFDARKYDFSRVGRLKFNIKLFDRQDP 482 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L DD ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+E Sbjct: 483 TGLDKRTLDPDDFYHTIRYLLKLRRNLGAVDDIDHLGNRRVRAVGELLENQFRIGLVRME 542 Query: 473 RAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 RA+KE++S ++ T MP D++NAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+S Sbjct: 543 RAIKEKMSVYQEMSTAMPHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLS 602 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 ALGPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS YA+ N+YGF+E+PY Sbjct: 603 ALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCYARINDYGFIESPY 662 Query: 592 RKVTDGVVTDEI------------------------------------------HYLSAI 609 R+V G V D + YLSA Sbjct: 663 RRVKGGRVIDYVQVTHAGDSDYRVGDKMEKSEAQKANEELRGRKKRGIELEPYSFYLSAW 722 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 EE + IAQAN+ LDE+G +LV R G L SRD +DY+DVS +Q+VSV ASL+P Sbjct: 723 EEDKWTIAQANAELDEKGKITSELVNARKAGNFVLISRDDIDYIDVSPKQLVSVAASLVP 782 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 FLEHDDANRALMGANMQRQ+VP LRA+ P+VGTGME A DSG +A+R G++ VD+ Sbjct: 783 FLEHDDANRALMGANMQRQSVPLLRAEAPIVGTGMEGVTARDSGAVVLARRSGIIDSVDS 842 Query: 730 SRIVIK---VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 R++++ + E G DIY LTK+ RSNQNTCINQ P V G+ V++G V+ADG Sbjct: 843 ERVIVRVEGEHHPMQLSREVGSDIYQLTKFKRSNQNTCINQKPIVKQGDHVKKGQVIADG 902 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 P TD GEL LG+N+ V+FMPW GYNFED+ILVSE++V+ED +T++HI+E +RDTKLG Sbjct: 903 PCTDHGELGLGRNVLVSFMPWRGYNFEDAILVSEKLVKEDYYTSVHIEEFEIEARDTKLG 962 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 PEEIT DIPNV E+AL LDESG++ IGA V GDILVGKVTPKGETQLTPEEKLLRAIF Sbjct: 963 PEEITRDIPNVSESALRDLDESGVIRIGAPVKAGDILVGKVTPKGETQLTPEEKLLRAIF 1022 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 GEKA DV+D+SL P G+ G V+DV++F+R G EKD+RA +IE Q+ + +K+L++E++I Sbjct: 1023 GEKAGDVRDASLTCPPGIEGVVVDVKIFSRKGQEKDERAKQIEGTQIAKLEKNLADEIRI 1082 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL----------------------ELGLTD 1004 L R+ +L A V+A+ D+ R L + D Sbjct: 1083 LTDERLKRLEGLLGAKVVQADLHDERTNKRLLTKDAVLDRETIERISTRNLKRIKYADKD 1142 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 Q++++ E K + K K+ +GD+L PGV+K+VKVY+A+KR++ GD Sbjct: 1143 PRVNEQIDEIEEMTSRQIDVLRKIVREKIEKLQKGDELPPGVIKLVKVYIAMKRKLSVGD 1202 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGVI++I P EDMPY E+GTPV+IVLNPLGVPSRMN+GQILETHLG A + Sbjct: 1203 KMAGRHGNKGVIARILPEEDMPYLEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAGHEL 1262 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G KI + + E ++R+ +++ + A V ++ DE ++++A+ ++ G+ + Sbjct: 1263 GKKIAEFMVENSEAGQVRKHLKQLFKDTAFVDH---VTELDDEMLLKVAKGMQDGVFFGS 1319 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 VFDG+ EAEIK LL LPTSG+ LYDG TG++FE+PVTVGY+YMLKL+HLVDDK+H Sbjct: 1320 AVFDGSTEAEIKSLLDQAGLPTSGKTFLYDGMTGDRFEQPVTVGYIYMLKLSHLVDDKIH 1379 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+ Sbjct: 1380 ARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKI 1439 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y+ IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 YEAIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1474 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 1205 bits (3117), Expect = 0.0, Method: Composition-based stats. Identities = 630/1379 (45%), Positives = 888/1379 (64%), Gaps = 48/1379 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R+R DF K P L+VP LL +Q DS+ F+ + G+E F+S+FPIQ Sbjct: 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQ 60 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA---PEGTVKDI 117 L+Y G+ + V+E RG+TYS PL++K+RL+++E++ + +KDI Sbjct: 61 DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI 120 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ +++ EIPLMT+ +F+ING ERV+V+QLHRSPGV F + + S K++Y +II Sbjct: 121 KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEE-ESSTSLNKLIYTGQII 179 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 P RGSWL FE+D KD L+ RI++RRK+P TI+ RA++Y + I+ +F+ V ++K Sbjct: 180 PDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKY 239 Query: 238 QMELVPERLRGETASFDIEA-NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + + FD++ GKV + G+++T+R I++L+++ ++ +E P++ + + Sbjct: 240 LIPF-ASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRH 298 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS-------- 348 +A+ + E++ +L + L K+ G + + L H I Sbjct: 299 LAEPVMVGK--EVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSE 356 Query: 349 --ETLRVDPTNDRLSALV--EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 + L+ D +AL I+++M+PG+P T E A+ + LFF +RYDL+ VGRMK Sbjct: 357 SLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMK 416 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + L+ +DII +K L+ I+N +G++DD DHLGNRRIR+VGE+ N+ Sbjct: 417 MNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANEL 476 Query: 465 RVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 GLV++++ +K++L+ G D+LMP D++N+K I++ + EFF QLSQFMDQ NPLS Sbjct: 477 HSGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLS 536 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALG GGL ++R GFE RDVHPTHYGR+CPIETPEG NIGLIN+LS + + N Sbjct: 537 EVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVN 596 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 + GF+E PY+KV DG V E YL+AI+E +++IA A++ +DEEG+ + DL+ R +GE Sbjct: 597 DLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEI 656 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 L + +V MD+S+ +V V ASLIPFLEHDDANRALMG NMQRQAVP LR D P+VGT Sbjct: 657 VLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPIVGT 716 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 G+E+ +A DS A R GVV+ +D+ I I EA ID Y+L K R+NQN Sbjct: 717 GIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQN 772 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 T NQ+P V +G+ VE G ++ADGPS D GELALG+N+RVAFMPWNGYNFED+I+VSER+ Sbjct: 773 TSFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERI 832 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++D FT+ HI E +R+ K G EE TADIP+V E AL+ LDESGIV +G V+ G I Sbjct: 833 TKDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMI 892 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 LVGK +PKGE + TPEE+LLRAIFG+KA V + SL P + GTVIDV+VFT+ G EKD Sbjct: 893 LVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKD 952 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA---------GGVEAEKLDKLP 993 R L E + + + + L +L R+ ++L G + ++ D++P Sbjct: 953 ARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIP 1012 Query: 994 RDRWLEL---------GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ + +E QN E + E K ++ E K + + D L Sbjct: 1013 KEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPN 1072 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV+K VK+Y+A KR+++ GDKMAGRHGNKG++S I P+ DMPY +G PVDIVLNPLGVP Sbjct: 1073 GVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVP 1132 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQ----QEVAKLREFIQRAYDLGADVRQKVD 1160 SRMNIGQILE HLG+ K G +I +ML+ + + + + G D Sbjct: 1133 SRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINGKDPLTIHV 1192 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 L + SDEE++ A++ KG+ +A PVF+G + + +L +L + G++ LYDGRTGE+ Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 V VGYMYM+KL+HLVD+K+HARSTG YSLVT QP+GGKA FGGQRFGEMEVWALEA Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAA+TL+EMLT+KSDD+ GR Y+ I G E +PE+F VL KE++SL ++I + Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINI 1371 >UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Tax=Bacteroidetes RepID=RPOB_SALRD Length = 1287 Score = 1176 bits (3041), Expect = 0.0, Method: Composition-based stats. Identities = 598/1359 (44%), Positives = 824/1359 (60%), Gaps = 122/1359 (8%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 R+ F P+V D P L +QL +F F++ D GL+A F FPI+ Sbjct: 21 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 80 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L++V+Y L P V+EC +G+TYS PL+ LRL + E + EQEVY+G + Sbjct: 81 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLT-SKEEEGGEEAIEAIEQEVYLGTL 139 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQLHRSPG FF+ + HS+G L++AR+IP+RGSW++F Sbjct: 140 PFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKE---IHSNGTELFSARVIPFRGSWMEFS 196 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 D +D L+ +DR++K+P T +LRAL + + E+I+ +F +I D E L Sbjct: 197 TDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEF----EEHL 252 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 E A+ V++ + +E Sbjct: 253 GRELATSVTIEKTIEIVDEDTG------------------------------EVVDEEME 282 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD---HGPYISETLRVDPTNDRLSAL 363 E++ A EL +L + R+ + + D + ETL+ D ++ AL Sbjct: 283 REVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLVETLQKDSSHTEEEAL 342 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 IY +R E P ++A E LFF+EDRYDL VGR + N L + +L+K+ Sbjct: 343 EVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTDEKVLTKE 402 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 D++ ++++LI ++NG+ DDIDHL NRR++SVGE +QF +GL R+ R +KER++L D Sbjct: 403 DVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIKERMNLRD 462 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 D P+D++NA+ I + + FFG++QLSQFMDQ N L+E+THKRR+SALGPGGLTRERA Sbjct: 463 ADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPGGLTRERA 522 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH THYGR+CPIETPEGPNIGL+ SL V++ N++GFLETPYR V DG VTD + Sbjct: 523 GFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVEDGRVTDRV 582 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 YLSA EE +AQAN+ + ++GHF D V CR +G+ + ++VDYMDV+ Q+VS Sbjct: 583 EYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVAPNQIVSP 642 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 ASL+PFL H+DANRALMG+NMQRQ VP LR+D P+VGTG+E VA DS VA+ GV Sbjct: 643 SASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCVVAEGEGV 702 Query: 724 VQYVDASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 V+YVDA R+V++ +E++ + Y LTK+ R+NQ TC+NQ P V G+ VE G Sbjct: 703 VEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPIVQAGDRVEEG 762 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +VL DG + + GELALG+N+ AFMPW+GYN+ED+I++SER+V +D +T++HI+E Sbjct: 763 EVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHIEEFEHEV 822 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 RDTK G EE+T +IPNV E A LDE GIV +GAE+T GDI+VGK+TPKGET TPEEK Sbjct: 823 RDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGETDPTPEEK 882 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEK--------------DKRA 945 LLRAIFG+KA DVKD+SL+ G+ G VID ++F+R ++ Sbjct: 883 LLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRRELDPASKKMEEKRLENIESDHE 942 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWLELGL 1002 ++ ++ + +K + AGL R VL+ G + E+ + P D Sbjct: 943 RKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDPSDLSTRAEF 1002 Query: 1003 T-DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 T DEE +Q+ L Y + + E + ++ ++ GD+L GV+++ KVY+A K++I+ Sbjct: 1003 TEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARKKKIE 1062 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGVI+KI P+EDMP+ ++GTPVD+VLNPLGVPSRMN+GQI ET LG A Sbjct: 1063 VGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYETLLGWAG 1122 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G K + + + + +++A Q D R G P Sbjct: 1123 DRLGVKYATPIFDGASLEDVGDELEKAGLPRDGKVQLYDG---------------RTGEP 1167 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 TVG +YM+KL HLV+D Sbjct: 1168 FDE---------------------------------------KTTVGQIYMMKLEHLVED 1188 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 KMHARS G YSL+TQQPLGGKAQFGGQR GEMEVWAL AYGA+ TLQEMLT KSDDV GR Sbjct: 1189 KMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLTFKSDDVEGR 1248 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ Y++IV G + PG+PESFNVL++E++ LG+ + L+ Sbjct: 1249 SEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1287 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1149 bits (2971), Expect = 0.0, Method: Composition-based stats. Identities = 656/1421 (46%), Positives = 889/1421 (62%), Gaps = 94/1421 (6%) Query: 12 RKDFGKRPQVLD-VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 R + + + D + L+ +Q +S++ F + G LE+ FRSVFPI + +++ Sbjct: 16 RISYSRSIDLKDSLLDLVKVQKESYKSFTPGN-HGNERLESIFRSVFPINDPLHRATIEF 74 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK------------ 118 +S R+ P +D EC RG+T+SA + +RLVI + K IK Sbjct: 75 ISCRIDNPKYDESECIKRGITFSARVIASIRLVIMQDGISLDEYKSIKGSGDHSKLSTII 134 Query: 119 ----EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 EQEV+ E+P+MTD GTF+ING E+VIVSQ+HRSPGVFFDSDKGKT++SGK++Y+A Sbjct: 135 KFIGEQEVHFCELPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKLIYSA 194 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLD EFD KD L+ RIDR+RKLP +++L+AL + ILD F+EK+ + Sbjct: 195 RVIPYRGSWLDIEFDVKDLLYFRIDRKRKLPISVLLKALGLSNSDILDRFYEKIKYIKYK 254 Query: 235 NKLQMELVPERLRGETASFDIEA-NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 N ++ VP++ +G FD+ G V + RIT+R ++L D++K VP + I Sbjct: 255 NSWKVPFVPDKFKGVRLPFDLMDVEGNVLFKANVRITSRLAKKLHDDELKEYLVPFDSIC 314 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G +A+D ID + I +A + ++ + KL I L ++L GPYI TL + Sbjct: 315 GLFLAEDLIDSVSSTKILSAGESIKIEDVKKLELLSIGEISVLNIDNLSVGPYILNTLFL 374 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D AL EIY+++RPGE P E E F NLFF+ + YDLS +GR+K N L + Sbjct: 375 DENMSYQDALYEIYKVLRPGEVPVLEIVEEFFHNLFFNPEYYDLSNIGRLKLNSYLGLDY 434 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E +L+ +DII++++K++ +R+G+G VDDIDHLGNRR+RSVGE ENQFR GL+++ER Sbjct: 435 DEDLTVLTHEDIIEIVRKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRAGLLKLER 494 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AV + +S LD + D IN K ++ +++FF SSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 495 AVIDSMSTSSLDKVSSPDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHKRRLSAL 554 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTR+RAGFEVRDVHPTHYGR+CPIETPEG NIGLINSL++YA+ N+YGF+E+PYRK Sbjct: 555 GPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARVNKYGFIESPYRK 614 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V + V TD+I YLSAI+EG Y IA A++ LD F++D++ CR G + S DQV Y+ Sbjct: 615 VINRVATDQIEYLSAIDEGLYYIADASAKLDNNNRFIDDMLYCRYAGNFVMVSSDQVSYI 674 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DVS +QV+SV ASLIPFLE+DDANRALMG+NMQRQAVP L+ PLVGTG+E VA SG Sbjct: 675 DVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVGTGIESFVASGSG 734 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 +AKR G+V D++ IVI+ ++E G+DIY+L K+ RSN NTCINQ P V + Sbjct: 735 AVVLAKRDGIVDSSDSNSIVIRAFDEERVNY-LGVDIYHLKKFQRSNHNTCINQKPLVRI 793 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V+ GDV+ADGP+ + GELALGQN+ VAFM W GYNFEDSI++S +V++D FT+IHI Sbjct: 794 GDYVKEGDVIADGPAINSGELALGQNLLVAFMSWQGYNFEDSIIISSEIVKKDLFTSIHI 853 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E CV DT LG E+IT IP V E L LD SGIV IG V G ILVGK+TPK Sbjct: 854 EEFECVVHDTPLGSEKITRAIPGVNEENLYHLDNSGIVKIGTRVGPGYILVGKITPKPSL 913 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 L PE KLL IFGEK+ D DSSL V GTVIDVQVFTR GVE+++RAL I++ ++ Sbjct: 914 LLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALLIKQKEM 973 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGV-EAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +K+ + + + ++ +LV + EKLD + R++W +GL + Q++ Sbjct: 974 NDLEKERDYIINVASEYFYDELKKLLVHSCSQDQEKLDAIEREQWWGIGLKNRSISEQVK 1033 Query: 1013 QLAEQYDELKH------------------------EFEKKLEAKRRKITQGDDL-----A 1043 L + +D+ K A + + GD + Sbjct: 1034 NLKKDFDKKVSNTIAQFKQKVEKLDEGYDLPQGVLMSVKVFIAVKHSLQPGDKMAGRHGN 1093 Query: 1044 PGVLKIV--------------------------KVYLAVKRRIQPG---DKMAGRHGNKG 1074 GV+ V ++ + G K+ R GN Sbjct: 1094 KGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILETHVGWACKKLGERVGN-- 1151 Query: 1075 VISKINPIE-DMPY------DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI-GD 1126 ++ +IN I D D N V + +I ++ + + KG+ D Sbjct: 1152 ILDEINKINSDFCKEIRSLDDNNFAKFAAVYFDNKKTEEVRDDEITDSLVNIPNKGLLND 1211 Query: 1127 KINAMLKQQQEVAKL-----REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 ++NA+++ K R F+ Y G+DV ++ S+ ++ A LR G+P Sbjct: 1212 ELNALVENYLNSCKSAYDNLRSFLIEVYSCGSDVSICNNIRDISNSNLIEFAHKLRNGIP 1271 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +A PVF+G K+ I +L L L SGQ YDGRTGE+F+R VTVGYMYMLKL+HLVDD Sbjct: 1272 VAAPVFEGPKDKNIIKLFTLAGLDPSGQTEAYDGRTGEKFDRKVTVGYMYMLKLHHLVDD 1331 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARS G YSLVTQQPLGGK+ FGGQRFGEME WAL+AYGAAYTLQEMLTVKSDD+NGR Sbjct: 1332 KIHARSVGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDINGR 1391 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K+Y++I+ G+ E G PESFNV++KE+RSL +N+ L+ Sbjct: 1392 VKIYESIIKGDSNFECGTPESFNVMIKELRSLCLNVALKQN 1432 >UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax=Bacteroidetes RepID=RPOB_CYTH3 Length = 1291 Score = 1142 bits (2953), Expect = 0.0, Method: Composition-based stats. Identities = 601/1381 (43%), Positives = 843/1381 (61%), Gaps = 145/1381 (10%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSG 64 + +RK F K ++ P L IQ+ SF+ F + D + GL F FPI Sbjct: 7 QNLRKSFAKTRSTVEYPDFLDIQVRSFKDFFQIDTPAENRFKEGLYKVFAENFPISDSRD 66 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 N L ++ Y + P ++V EC RG+TY+ PL+ KLRL +++ + EQEV++ Sbjct: 67 NFILDFIDYNIDTPKYNVDECIDRGLTYAVPLKAKLRLTCNDKDNEDFQT---IEQEVFL 123 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G IP MT+ G+FVING ERVIVSQLHRSPGVFF K H++G LY+AR+IP++GSW+ Sbjct: 124 GNIPYMTERGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARVIPFKGSWI 180 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +F D + +F IDR++K P T +LRA+ Y + + ILDLF E ++ + Sbjct: 181 EFATDVNNVMFAYIDRKKKFPVTTLLRAIGYGSDKDILDLFGLSEEVEATKANIKKAI-- 238 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 GR++ AR +R +D V + + Sbjct: 239 ----------------------GRKLAARVLRTWTEDFVDED------------TGEVVS 264 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN-DLDHGPYISETLRVDPTNDRLSA 362 E++ + + + + + +SG K I + ++ I TL+ D +N A Sbjct: 265 IDRNEVLLERDSIIKEEDINIIVESGSKSIILHREDVNIADYTIIYNTLQKDNSNSEKEA 324 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 + +IYR +R + P + A + NLFFS+ RYDL VGR + N+ L +L+K Sbjct: 325 VEQIYRQLRNTDAPDEQTARDIIHNLFFSDKRYDLGEVGRYRINKKLGSGMGSEVKVLTK 384 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 +DII+++K LI + N + VDDIDHL NRR+R++GE +QF VGL R+ R +KER+++ Sbjct: 385 EDIINIVKYLIGLINSRAVVDDIDHLSNRRVRTMGEQLYSQFSVGLARMARTIKERMNVR 444 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 D + P D+INA+ +S+ + FFG++QLSQFMDQ NPL+EITHKRR+SALGPGGL+RER Sbjct: 445 DNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRMSALGPGGLSRER 504 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV--VT 600 AGFEVRDVH THYGR+C IETPEGPNIGLI+SL V+A+ N GF+ETPYRKV DG+ V Sbjct: 505 AGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMGFIETPYRKVIDGIVDVK 564 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 ++ +L+A EE IAQAN+ D+ G+F+ D + R +G+ + + D+VD +D++T Q+ Sbjct: 565 NQPVFLTAEEEDGAHIAQANAMYDDNGNFISDRIKARYEGDFPVIAPDKVDLIDIATNQI 624 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VSV ASLIPFLEHDDANRALMG+NMQRQAVP LR + P+VGTG+ER VA+DS +A+ Sbjct: 625 VSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLERRVAMDSRTLLIAEA 684 Query: 721 GGVVQYVDASRIVIK---VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 GVV++VDA+ I ++ +ED + ++ I Y+L K+ R+NQ+TCIN P + GE V Sbjct: 685 DGVVEFVDANEIKMRYDLTDEDRLVSFDSDIITYSLIKFRRTNQDTCINLKPVIQHGERV 744 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 ++G VL +G +TD GELALG+N+ VAFMPW GYNFED+I++SE+VV++D FT+IHI+E Sbjct: 745 KKGQVLCEGYATDKGELALGRNLMVAFMPWQGYNFEDAIVISEKVVRDDIFTSIHIEEFE 804 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 RDTK G EE+T++IPNV E A+ LDE+GI+ GAE+ GDIL+GK+TPKGE+ TP Sbjct: 805 LEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRTGAEIKEGDILIGKITPKGESDPTP 864 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD---KRALEIEEMQLK 954 EEKLLRAIFG+KA DVKD+S++ P + G VID ++F+R +KD K ++E ++ K Sbjct: 865 EEKLLRAIFGDKAGDVKDASMKAPPSLRGVVIDTKLFSRPKKDKDLRIKSKKQVETIKGK 924 Query: 955 QAKKDLSEELQILE-----------AGLFSRIRAVLVAGGVEAEKLDKLPR--------- 994 +K L+ Q++E G+ + +++ GV+ + + Sbjct: 925 YSKDLLALREQMIEKLAALLDGQTSQGVKHKFGDEVISKGVKFSRKNIEANVFPDKNPYR 984 Query: 995 ---------------DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 D ++ +D++ + +L + Y ++E K + +R + G Sbjct: 985 DESNYNVQEEANLLGDLIIDNWTSDKKINENVLRLVKNYLTKRNETAGKFKRERFTLEVG 1044 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L G++++ KVY+A KR+++ GDKMAGRHGNKGV+++I EDMP+ E+GTPVDIVLN Sbjct: 1045 DELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTPVDIVLN 1104 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQI ET LG+A K +G K + ++ ++ A + V Sbjct: 1105 PLGVPSRMNIGQIYETLLGLAGKKLGRKYATPIFDGASEEEVINELRDAGLPTIGRTKLV 1164 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D ++ FD Sbjct: 1165 D--------------------GLSGNPFD------------------------------- 1173 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 +PVTVG +YM+KL HLVDDKMHARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALE Sbjct: 1174 ---QPVTVGVIYMMKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALE 1230 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 A+GAA LQE+LTVKSDDV GR K Y+ IV G + P +PESFNVL+ E+R L + I L Sbjct: 1231 AFGAANILQEILTVKSDDVVGRAKTYECIVKGENLPRPNIPESFNVLVHELRGLALEITL 1290 Query: 1340 E 1340 Sbjct: 1291 H 1291 >UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Tax=Chlamydiae/Verrucomicrobia group RepID=RPOB_PARUW Length = 1254 Score = 1138 bits (2942), Expect = 0.0, Method: Composition-based stats. Identities = 613/1366 (44%), Positives = 844/1366 (61%), Gaps = 161/1366 (11%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGNSE 67 R+ F + +++D+P L+ IQ+ S+ +F++ D GL+ F +FPI+SY + Sbjct: 8 RESFNDKEEIIDLPNLIEIQIKSYNQFLQADKFPDERENIGLQEVFTEIFPIKSYDEKTI 67 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++SY LG P ++ +EC RG+TY+ L+VK RL IKE+EVYMG I Sbjct: 68 LEFLSYNLGVPKYNPEECIRRGITYNVTLKVKFRLTDET---------GIKEEEVYMGTI 118 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF++NG ERV+VSQLHRSPG+ F+ ++ HS G V+Y+ RIIPYRGSWL+ Sbjct: 119 PVMTDKGTFIVNGAERVVVSQLHRSPGICFEQER---HSRGNVIYSFRIIPYRGSWLEGA 175 Query: 188 FDPKDNLFVRIDRR---RKLPATIILRALNYTTE-QILDLFFEKVIFEIRDNKLQMELVP 243 FD D + + IDR+ RK+ AT +RAL Y++ I++ FF Sbjct: 176 FDTNDLIHIYIDRKKRRRKILATTFIRALGYSSNSDIIEEFF------------------ 217 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 T R + + + + GK++A+D +D Sbjct: 218 --------------------------TTRKYKIKNEKEFAK-------LVGKILAQDVVD 244 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 E +G + A+ +L+ +L ++ +G I D D + + L DPT+ SAL Sbjct: 245 EESGLVFGKASEKLTTAMLKRIVDAGIDVIR--IAEDADETSPVIKMLAKDPTDSYESAL 302 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL---REEIEGSGIL 420 + YR +RPGEP T A S LFF RY+L VGR K N L +E + L Sbjct: 303 KDFYRKIRPGEPATLSNARSAIMRLFFDPKRYNLGRVGRYKLNSKLGCEINDEKLQTVTL 362 Query: 421 SKDDIIDVMKKLIDIRNG--KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 K+D+I +K LI +++G + +DDIDHLGNRR+RSVGE+ +NQ R+GL R+E+ ++ER Sbjct: 363 DKEDVIGALKYLIMLKSGSEEASIDDIDHLGNRRVRSVGELIQNQCRIGLARMEKIIRER 422 Query: 479 LSLGDL--DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ++L D DTL P +++AK +S +K+FFG SQLSQFMDQ NP++E+THKRR+S+LGPG Sbjct: 423 MNLFDFSSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLSSLGPG 482 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI+SLS +A+ NE+GF+ETPYR V + Sbjct: 483 GLNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLISSLSSFAKINEFGFIETPYRIVRE 542 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 GVVTDEI Y++A +E VIAQA++ LDE F E + R KGE V +MDVS Sbjct: 543 GVVTDEIEYMTADQEEQCVIAQASAPLDEYHMFAEPICWARYKGEQFETDTKNVTHMDVS 602 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 +Q+VS+ LIPFLEHDDANRALMG+NMQRQ VP L+ P+VGTG+E A DSG Sbjct: 603 PKQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLKPTAPIVGTGLEARAARDSGAVL 662 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +A GVV YVD +IVI +++ + Y L K+ RSN TCINQ P +G+ Sbjct: 663 IAHEDGVVDYVDGLKIVISPDDNRLEKR-----TYLLKKFIRSNAGTCINQRPLCHVGDK 717 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 ++ GDV+ADGP+TD GE+ALG+N+ VAFMPW GYN+ED+I++SE++++ED +T+++I+E Sbjct: 718 IKAGDVIADGPATDKGEVALGRNVLVAFMPWFGYNYEDAIIISEKLLREDYYTSLYIEEF 777 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +RDTKLG EEIT DIPNV E L L++ GI+ IGAEV GD LVGK+TPK ET+L Sbjct: 778 ELTARDTKLGKEEITRDIPNVSEETLRNLNDDGIIRIGAEVKPGDTLVGKITPKSETELA 837 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQ 955 PEE+LLRAIFG+KASDVKD+SL P G G V+DV+VF+R + K L E +LK Sbjct: 838 PEERLLRAIFGDKASDVKDASLIAPPGTEGVVMDVKVFSRRDRLSKTDDELVEEASKLKD 897 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGG--------------------VEAEKLDKLPRD 995 +++ L R+ A+L+ + + ++ L ++ Sbjct: 898 IQREYKSNQAQLRTEKHERVGALLLNETAPGNIVHRRTAEIIVDEGDLITQDLIEALEKE 957 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DLAPGVLKIVKVYL 1054 +L + + + L Q+ Y+ E + + + + +GD DL PGV++ VKVY+ Sbjct: 958 SVEDLLMPENDIYTTLRQILHDYEIALQTVETQYKTQLEFMRKGDTDLDPGVIRQVKVYV 1017 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR++Q GDKMAGRHGNKGV+SKI P DMP+ G ++I+LNPLGVPSRMN+GQ+ E Sbjct: 1018 ASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLSTGQTIEIILNPLGVPSRMNMGQLFE 1077 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 THLG+AAK G + + + + K+ E ++ Sbjct: 1078 THLGIAAKHTGITVKSPVFEGFPEEKIWEMMK---------------------------- 1109 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + G+P F LYDG +GE+F+ V VGY+YMLK Sbjct: 1110 --KAGLPEDGKFF------------------------LYDGCSGERFDNSVVVGYIYMLK 1143 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L+HLV DK+HAR+ G YSLVTQQPLGGKAQ GGQRFGEMEVWA EAYGAA+ LQEMLTVK Sbjct: 1144 LSHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQEMLTVK 1203 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDDV GRT++Y++IV G + ++ G PESFNVL+KE++ LG+N+ E Sbjct: 1204 SDDVAGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLNVYTE 1249 >UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria RepID=B2KEN1_ELUMP Length = 1270 Score = 1137 bits (2940), Expect = 0.0, Method: Composition-based stats. Identities = 594/1366 (43%), Positives = 817/1366 (59%), Gaps = 163/1366 (11%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSELQ 69 +FG+ L +P LL +Q +SF F++ D GL+AAF VFPI++ G+ +L+ Sbjct: 5 NFGQISSKLSLPDLLDMQKESFVDFLQLDVAPTKRELKGLQAAFEDVFPIEAPDGSMKLE 64 Query: 70 YVSYRLGEPVF-DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 +V Y LG P + Q+ +R TYSAP++ +RL + +R+ G +K+ EQ+V + ++P Sbjct: 65 FVKYELGAPRYSTPQQAALRDGTYSAPMKAVMRLSVKKRD---GKLKEASEQDVTLCDLP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS-GKVLYNARIIPYRGSWLDFE 187 LMTD G FV NG ERV+VSQLHRSPG+ F+ D+ K S+ GK LY ARIIPYRG+W++F Sbjct: 122 LMTDAGCFVFNGAERVVVSQLHRSPGIIFEEDEEKKQSTLGKKLYVARIIPYRGAWIEFS 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 FD + L+VRIDR++K+ AT LRA T QI+ F++ E++ ++ + + Sbjct: 182 FDIMNALWVRIDRKKKVLATTFLRACGLETNAQIIQAFYDVEDVEVKPAEI------DNV 235 Query: 247 RGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 G A+ DI A G+V + Sbjct: 236 VGRYAADDIVDPATGEVLWNLDDKAA---------------------------------- 261 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR--VDPTNDRLSA 362 + ++ +++ + K+++ + N P I TL D A Sbjct: 262 ------MPMDDKIFKEMVER----KIKKVKIISGNPRQDDPGILATLENRKDQIRTSKEA 311 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFF-SEDRYDLSAVGRMKFNRSL------------ 409 +IY+ MR + +E AE+ +NL F + RYDLS VGR K N+ Sbjct: 312 QADIYKKMRGQDFVVKEQAEAFLDNLIFDNIRRYDLSYVGRYKINKKFASLFDIVENLKF 371 Query: 410 --LREEIEGSGILSKDDIIDVMKKLIDIRNGKG-----------EVDDIDHLGNRRIRSV 456 + + LS +DII +K L+ + G+ + DDIDHLGNRR+R + Sbjct: 372 KKFTKPTDKRRTLSAEDIIVTVKYLLALNAGEDAQKMYGEEIIFKTDDIDHLGNRRVRGI 431 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 GE+ ENQ RVGL ++ + ++R++ +L + P+ ++NA+P+ A +K+FFG+SQLSQFMD Sbjct: 432 GELLENQIRVGLSQMAKTARDRMNK-ELASHTPRALVNAQPVQAIIKKFFGTSQLSQFMD 490 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 Q NPLSE+THKRR+SALGPGGL R+RAGFEVRDVH THYGRVCPIETPEGPNIGLI SL+ Sbjct: 491 QINPLSELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGLITSLA 550 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 Y++ N+YG +ETPYRKV G VTD YL+A +E + ++AQ+N+ L + G D+V+C Sbjct: 551 CYSKVNKYGLIETPYRKVNSGKVTDNFEYLTADQEDDLMVAQSNTPLTDSGKINTDMVSC 610 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + + + S +VDYMDVS QV+SV A+LIPFLEHDDANRALMG NMQRQ VP L + Sbjct: 611 RVRSDYPIVSPSEVDYMDVSPLQVISVSAALIPFLEHDDANRALMGCNMQRQGVPLLLTE 670 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 PLVGTG+E VA DSG T A + G V + A +I ++ E +IY+L KY Sbjct: 671 APLVGTGIEHEVARDSGATISAAKPGRVVFAAADKIAVEPLEG------GAPEIYDLIKY 724 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQ+TCINQ P V G+ V++G VLADGP+ G LALG+N+ V FM W GYN+ED+I Sbjct: 725 KRSNQDTCINQRPLVKAGDIVKKGTVLADGPAMKDGFLALGKNLLVGFMSWEGYNYEDAI 784 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 LVS ++V+ED FT++H+ E + +R+TKLG EEIT DIPN+G AL+ LD GIV Sbjct: 785 LVSHKLVKEDVFTSVHLHEFSIDARNTKLGAEEITRDIPNIGAEALAHLDADGIVIPSTV 844 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPKGE QLTPEE+LL+ IFG+KA DV D+SLRVP G SG VI +VF Sbjct: 845 VEPGDILVGKVTPKGEQQLTPEERLLKVIFGKKADDVVDASLRVPPGTSGKVIGTRVF-- 902 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 + K K + ++ LE + + + + + Sbjct: 903 -------------VRKEKLTKAEEKARIKALEDEKTTNLETLKEQRKLALTNIKDS---- 945 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 ++ + + E++ Y +L+ + E + QGD+LA V K VKV++A Sbjct: 946 ------NVKDAKKEEERINALYKKLEKRVLEDFEREMEFSKQGDELAVTVNKSVKVFIAS 999 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 KR++ GDK++GRHGNKGV++KI P EDMP+ +GTP+DIVL+PLG+PSRMN+GQ+ ET Sbjct: 1000 KRKLMVGDKLSGRHGNKGVVAKILPEEDMPFLPDGTPLDIVLSPLGIPSRMNVGQLFETM 1059 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 LG AAK +G + +RE I++A + Sbjct: 1060 LGWAAKNLGYNAATPVFDGPTEETVREEIKKAKKALIEKGVP------------------ 1101 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + +I LYDGRTG+ FE VT+GYMY++KL Sbjct: 1102 -----------------------EKHLPDDYCRITLYDGRTGQPFEEKVTIGYMYIMKLI 1138 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 HLV+DK+HARSTG YSL+T+QPLGGKAQFGGQRFGEMEVWA+E YGA YTLQE LTVKSD Sbjct: 1139 HLVEDKVHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAIEGYGATYTLQEFLTVKSD 1198 Query: 1297 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 D GRTKMY++IV G +PG+PESF VL+KE+++LG+++EL + Sbjct: 1199 DFTGRTKMYESIVRGEAPQQPGVPESFKVLVKELQALGLSVELLKD 1244 >UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Tax=Bacteria RepID=RPOB_METI4 Length = 1289 Score = 1129 bits (2921), Expect = 0.0, Method: Composition-based stats. Identities = 616/1368 (45%), Positives = 831/1368 (60%), Gaps = 140/1368 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSY 62 +K R +FGK + L +P L+ Q S+ F++ Q GL F VFPI+SY Sbjct: 2 NEKIQRINFGKIREGLSLPNLIEHQTKSYADFLQLSVAPQERKAEGLHGVFLEVFPIESY 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 G +L+YV+Y +GE F +C G TY+APL V RL + +KE++V Sbjct: 62 DGKVKLEYVNYEIGESKFSPIDCLRDGKTYAAPLYVTFRL---------KDEEGVKEEKV 112 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 YMGE+P+MT G+F+ING ERVIV+QLHRSPG+ F+ HS+GK LY+ RIIP RGS Sbjct: 113 YMGELPMMTPQGSFIINGAERVIVNQLHRSPGICFE---SSFHSNGKTLYSFRIIPDRGS 169 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+ FD D L+V +DRR+K F + L Sbjct: 170 WLEVAFDTNDLLYVYLDRRKK-----------------RRKFLITTLLRALAAALSGPSS 212 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 P G R +E+ ++ + + +A KV+ + Sbjct: 213 P------------------LGSGGDEEIIRLFYTVEELNLSE-GIDEDKVATKVLVSEVK 253 Query: 303 DEST-GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 D ++ A ++ ++ +L G + I + D+ + + + L+ DPT D + Sbjct: 254 DPHNPDVVLARAYEPVTRSVVRQLLDVGIQSISVV---DVQYDDTLIKCLKKDPTKDPVE 310 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 AL EIYR +RPG+PPT A+ L + L RYDL VGR K N+ L + IL+ Sbjct: 311 ALKEIYRRLRPGDPPTESNAKLLLKRLLLDPKRYDLGRVGRYKLNQKLNIQVDPDIRILT 370 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 +D++ + LI +R G+G DDIDHLG+RR+R+VGE+ NQ R+GL R ER VKER++L Sbjct: 371 WEDLVAATRYLIKLRKGEGITDDIDHLGSRRVRTVGELVANQCRMGLARTERLVKERMTL 430 Query: 482 GDLDT--LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 D++T + PQ +IN K +SA +++FF SQLSQ MDQ NPLSE+THKRR+SALGPGGL+ Sbjct: 431 FDVNTEGMTPQKLINPKALSATIRDFFARSQLSQLMDQINPLSELTHKRRLSALGPGGLS 490 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI +++ Y++ N+YG LETPYRKV +G V Sbjct: 491 RERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSRFNDYGILETPYRKVLNGKV 550 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 T+EI Y +A +E NYVIA AN+ + E+G ++ V R + E R++V+YMDVS +Q Sbjct: 551 TNEIVYFTADQEENYVIAMANTAVSEDGTILDQRVAVRFRREFMEVEREKVEYMDVSPKQ 610 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VSV A LIPFLEHDDANRALMG+NMQRQAVP ++ + P+VGTG+E VA D V++ Sbjct: 611 IVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLIQPEAPIVGTGIEERVARDIQAVIVSE 670 Query: 720 RGGVVQYVDASRIVIKVN----EDEMYPGEAGID----IYNLTKYTRSNQNTCINQMPCV 771 G V V I++ E + + G + +Y L K+ RSN TCINQ P V Sbjct: 671 VDGTVSSVTGKEIIVTPTGSPVEQKKKKSKQGSEREGIVYKLNKFMRSNAGTCINQKPIV 730 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 G+ V++GDVLADGPST GELALG+N+ VAFMPWNGYNFED+I+VSERVV+ED FT+I Sbjct: 731 KKGQVVKKGDVLADGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSERVVKEDLFTSI 790 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 +I E V+RDTKLGPEEIT DIPNVG+ AL L GI+ +GAEV GDILVGK+TPK Sbjct: 791 YIDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPGDILVGKITPKS 850 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD--------K 943 ET+L PEE+LLRAIFGEKA+DVKDSSLRVP+G G V+DV+V + + K Sbjct: 851 ETELAPEERLLRAIFGEKAADVKDSSLRVPSGTYGIVMDVRVSSGTARVRKEKINASEAK 910 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + ++ E + Q +++L EEL + + + L VE ++ + ++ L Sbjct: 911 QKIKEIEERYDQKEEELREELTQALSNILLNEKIPLDVVNVETGEIIIPANRKITKVLLR 970 Query: 1004 D-----EEKQNQLEQLAEQYDELKHEFEKKLEAKRR-------KITQGDDLAPGVLKIVK 1051 ++ + + + E+ FE K E R +I G+D PG++K VK Sbjct: 971 KMAQAYDKIEIDPSPIRSKIFEIIGNFEAKFEQLRNDRELELDQIESGEDTEPGIIKQVK 1030 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V++A KR++ GDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVLNPLGVPSRMN+GQ Sbjct: 1031 VFIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPYLPDGTPVDIVLNPLGVPSRMNVGQ 1090 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +LETHLG+AAK +G + + + K+REF+ +A D T Sbjct: 1091 VLETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKAGMDEDGKSILYDGRTGE------ 1144 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 +++ + V VG +Y Sbjct: 1145 ----------------------------------------MFN--------QRVVVGMIY 1156 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 M+KLNH+V DK+HAR+ G YSLVTQQPLGGKAQ+GGQRFGEMEVWA+EAYGAAY LQE+L Sbjct: 1157 MMKLNHMVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWAMEAYGAAYILQELL 1216 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TVKSDDV GRT++Y++IV G + +E PESFNVL+KE++ L + + + Sbjct: 1217 TVKSDDVQGRTRIYESIVKGENYLETTTPESFNVLIKELQGLCLEVNI 1264 >UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Tax=Bacteria RepID=RPOB_CHLPD Length = 1312 Score = 1120 bits (2897), Expect = 0.0, Method: Composition-based stats. Identities = 608/1399 (43%), Positives = 817/1399 (58%), Gaps = 182/1399 (13%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFPIQSYSGNSELQ 69 DF K V+D P LL +QLDSF FI+ GLE RS FPI G L+ Sbjct: 22 DFSKIQSVIDPPDLLKVQLDSFHNFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLE 81 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 Y+SY +P + V++C RG+TY L+VKL+L Y+ E E K+ +QEVY+G IP Sbjct: 82 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLS-YKDEPDEADWKETIQQEVYLGRIPY 140 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 MT+ GTF++NG ERV+V+QLHRSPGV F H +GK +Y+A+I+P RGSW++F+ D Sbjct: 141 MTERGTFIVNGAERVVVAQLHRSPGVVFSE---AIHPNGKKMYSAKIVPTRGSWIEFQTD 197 Query: 190 PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + +FV ID+++ T +LRA+ + E IL LF ++ + E+L G Sbjct: 198 INNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLF------DLVEEVKITSAKKEQLIG 251 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 + + DI +D TGE Sbjct: 252 QYLASDI----------------------------------------------VDMQTGE 265 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLF----TNDLDHGPYISETLRVDPTNDRLSALV 364 + +A ++ D++ ++ +G+K + + + I T+ D + AL Sbjct: 266 V-VSARTAITEDIVDQIIAAGYKSVRVMKSFSGNDKGPDKSIIINTILNDNSATEEEALE 324 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG------ 418 +Y +R E P +AA S E FF++ +YDL VGR + + L +E E G Sbjct: 325 IVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLSKEFEELHGYLDGQP 384 Query: 419 ------------------------------ILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 +L+ DII V+ LI + NG+ EVDD+DHL Sbjct: 385 ELKKLSDTIYEKILHTIQSFSDEPIGGDILVLTHYDIIAVIYYLIKLVNGQAEVDDVDHL 444 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 NRR+RSVGE QF +GL R+ + V+E+L+ D D + P D+INA+ +S+ V FF + Sbjct: 445 ANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFAT 504 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQLSQFMDQ NPL+E+T+KRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPN Sbjct: 505 SQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPN 564 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 IGLI+SLSVYA+ N+ GF++TPYR VT+GVVTD + LSA +E N + + LDE Sbjct: 565 IGLISSLSVYAEINDKGFIQTPYRVVTNGVVTDTVLMLSAEDEENKITVPVSIPLDENMK 624 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 + V R+KG+ L + V+YMDVS Q+VS A+LIPFLEHDD NRALMGANMQRQ Sbjct: 625 IAIESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQRQ 684 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE-------M 741 AVP L A+ P+VGTGME VA DS +A+ G+V V A I ++ + D + Sbjct: 685 AVPLLTAEAPIVGTGMESKVARDSRSVILAEGDGIVDDVTAEYIKVRYDIDADTDVRLSL 744 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + G+ Y L K+ RSNQ+TCI+Q P + +G+ V +GDVLAD ST+ GELALG+N+ Sbjct: 745 LDPDEGLKTYKLIKFKRSNQDTCISQKPLIHIGQRVSKGDVLADSSSTENGELALGKNVL 804 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 VAFMPW GYNFED+I++SER+V +D FT+IHI E RDTK G E+ T DI NV E A Sbjct: 805 VAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSEDA 864 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L LDE+GIV IGAEV DILVGK+TPKGE+ TPEEKLLRAIFG+K+SDVKD+S+ VP Sbjct: 865 LRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVP 924 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA-----------G 970 G+ G VI ++F+R +IE ++ K K+ + L+ G Sbjct: 925 AGMKGIVIKTKLFSRKKKVGLDIKEKIEILEKKYDYKEYDLRKKFLKRLKQLLEGKTSTG 984 Query: 971 LFSRIRAVLVAGGVEA-----EKLDKLPRDRWLELGLT---DEEKQNQLEQLAEQYDELK 1022 ++S +LVA E+ +P ++ E+ + L +++ Sbjct: 985 IYSDKGKLLVAEDAVYDDSVLERFTAIPFLESIDFVKGVTQSEKVNENVMLLVKEFRLKL 1044 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 + + + ++ K+ GD+L PG+ ++ KVY+A KR+IQ GDKMAGRHGNKGV+ KI PI Sbjct: 1045 KDLNDERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVGKILPI 1104 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+ ENG PVDIVLNPLGVPSRMNIGQ+ ET LG A K +G K + +++ Sbjct: 1105 EDMPFMENGKPVDIVLNPLGVPSRMNIGQLYETSLGWAGKELGVKFKTPIFNGATYQEVQ 1164 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 + +++A ++DG + + Sbjct: 1165 QELEKAGLP----------------------------SHGKVSLYDGRTGEQFDDE---- 1192 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 VT+GY+YMLKL+HLVDDK+HARSTG YSL+TQQPLGGK Sbjct: 1193 ----------------------VTIGYIYMLKLSHLVDDKIHARSTGPYSLITQQPLGGK 1230 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 AQFGGQRFGEMEVWALEAYGAA L+EMLTVKSDDV GR K Y+ IV G + EPG PES Sbjct: 1231 AQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEPGTPES 1290 Query: 1323 FNVLLKEIRSLGINIELED 1341 FNVL++E++ LG+ I ++D Sbjct: 1291 FNVLVRELQGLGLEIRIDD 1309 >UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Tax=Aquificales RepID=RPOB_AQUPY Length = 1469 Score = 1109 bits (2867), Expect = 0.0, Method: Composition-based stats. Identities = 653/1465 (44%), Positives = 897/1465 (61%), Gaps = 161/1465 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 RK FG+R ++L+ PYLLSI +SF+ F++ GLE FR+ FP + N Sbjct: 8 RKFFGRRTEILEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLEHIFRTSFPFKDPDENFI 67 Query: 68 LQYVSYRLG---------EPV-----------------------FDVQECQIRGVTYSAP 95 L+Y+ Y +G +P F +EC+++G+TYSAP Sbjct: 68 LEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCPECGAKLVYKEKFTPEECKLKGLTYSAP 127 Query: 96 LRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 LRV L+L + + + ++VY GE+PLMTDNG+F+INGTER+I++QL RS GV Sbjct: 128 LRVMLQL----KAKTKNGYRTFPPRKVYFGEVPLMTDNGSFIINGTERIIINQLIRSSGV 183 Query: 156 FFDS--DKGKTHSSGKVLYNARIIPYRGSWLDFEFDP-KDNLFVRIDRRRKLPATIILRA 212 FFD +K K + ++LY A IIP +GS ++FE D + RIDR+ KL A +LRA Sbjct: 184 FFDEKEEKQKDATITRILYRASIIPDKGSRVEFELSGATDLISARIDRK-KLSAISVLRA 242 Query: 213 LNY-TTEQILDLFFEKVIFEIRDNKLQM------ELVPERLRGETASFDIEANGKVYVEK 265 T IL F+E V I +K E PE L ++ K+ Sbjct: 243 FGLETAYDILKPFYEGVRKYIVKDKYLYDAETGEEFTPEDLEHHYIFAILKFKAKIAGFG 302 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 + + ++ +L+ +D+ E++ ++ + Sbjct: 303 TSKEREIIEERYIEEWEELV--------------RILDDERIEVLSVTSVPRENVI---K 345 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTND-RLSALVEIYRMMRPGEPPTRE----- 379 S G ++TL T+ ++V R L+E+Y+ +R E T E Sbjct: 346 SPYGKSLVDTLATDTSPRDADRRSPVKVPAEYTLRDYGLMEMYKKLRHIEALTMEIDSII 405 Query: 380 -AAESLFENLFFSEDRYDLSAVGRM----------------------------------- 403 A F F RYDLS VGR+ Sbjct: 406 ERARVYFNVFFRDLKRYDLSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPPLALAEDYGE 465 Query: 404 -----KFNRSLLREEIEGS-------------GILSKDDIIDVMKKLIDIRNGKGEVDDI 445 + + LL+E + L D+I+++K LID+R+G+ + DDI Sbjct: 466 YKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHGRVKKDDI 525 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVK 503 HLGNRR+RSVGE+ ENQ R+G+ ++E+ ++R + + L PQD IN + ++ A+ Sbjct: 526 AHLGNRRVRSVGELLENQARLGIAKMEKVFRDRSATIHPEQPDLKPQDFINPRYVTNAIA 585 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 +F + QLSQ++D NPLSE+THKRR+SALGPGGLTRE A FE+RDVHP+HYGR+CPIET Sbjct: 586 DFLKTGQLSQYLDNTNPLSELTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIET 645 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 PEG NIGL+ S +VYA+ NEYGFL TPYRKV +G VTD+I +L+A EE NYVIAQ ++ Sbjct: 646 PEGQNIGLVTSPTVYARVNEYGFLITPYRKVENGRVTDKIEWLAAYEEENYVIAQ-STPT 704 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 DEEG + V R K + L +QVDY+DVS +QV+S +SLIPFLEHDDANRALMG+ Sbjct: 705 DEEGRIKAEFVLARHKNDIRLVKPEQVDYIDVSPRQVISPSSSLIPFLEHDDANRALMGS 764 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY- 742 NMQRQAVP + PLVGTGME+ +A DS VAKRGGVV+ VD S+I+++VN +E+ Sbjct: 765 NMQRQAVPLIFTQAPLVGTGMEKKIARDSHAVVVAKRGGVVEEVDGSKIIVRVNPEEINL 824 Query: 743 --PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 P + GIDIY L K+ R+NQ TC+NQ P V GE VE+G ++ADG STD GELALG+++ Sbjct: 825 EDPLDIGIDIYELRKFERTNQKTCVNQRPIVKKGERVEKGQIIADGHSTDRGELALGKDV 884 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 VAFMPW GYNFED+I++SER+V+ED +T+IHI+EL +R+TK+G EEIT IP V E Sbjct: 885 LVAFMPWRGYNFEDAIVISERLVKEDVYTSIHIEELEVEARETKVGDEEITRQIPGVPER 944 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 AL+ LDE GIV +G V GDILVGKVTPKGET+LTPEEKLL+AIFGEK DVKD+SLR Sbjct: 945 ALAHLDEHGIVRVGTYVKPGDILVGKVTPKGETRLTPEEKLLQAIFGEKTKDVKDASLRC 1004 Query: 921 PNGVSGTVIDVQVFTRDGVE--KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 P GV G VIDVQVFTR G + KD A ++E +L+ +++L ++ +L +G+ ++ + Sbjct: 1005 PPGVEGIVIDVQVFTRKGGKAAKDMLAQKVEREELEALERELEKKKNLLMSGVEKVLKGL 1064 Query: 979 LVAGGVEAEKLDKLPRDRW-------------------LELGLTDEEKQNQLEQLAEQYD 1019 ++ + + + E TDEE ++ ++ + Sbjct: 1065 ILGKKTDKDVKIGKKEIKKGTEITEEIFKEYSQYILARPENFFTDEELIKKIREIYTRSR 1124 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 +K + K+ + + DL PGV+ +VKV++A KR+I+ GDKMAGRHGNKGVIS + Sbjct: 1125 TQIDMLQKVYQEKKETLLKRRDLPPGVITLVKVFIANKRKIKVGDKMAGRHGNKGVISVV 1184 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P+EDMP+ +GTPVDIVLNPLGVPSRMN+GQILETHLG AAK +G KI M+++ ++ Sbjct: 1185 LPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRDRK 1244 Query: 1140 KLREFIQRAYDLGADVRQK-----VDLSTFSDEEVMRLAENL-RKGMPIATPVFDGAKEA 1193 + E+++ Y +G + + L++ S+EE + + ++G+P+ATP F+GA E Sbjct: 1245 AITEYLKEIYAVGDENGENAKFIEEFLNSLSEEEFWSVVRDYAQRGIPMATPAFEGADEK 1304 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 +KELLK LP SG+ LYDGRTGE F+ VTVGYM+MLKL H+VDDK+HAR+TG YSL Sbjct: 1305 AVKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPYSL 1364 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 VTQQPLGG+AQFGGQR GEMEVWALEA+GAAYTLQEMLTVKSDDV GR+K+Y+ IV G + Sbjct: 1365 VTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVEGRSKVYEAIVKGKY 1424 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIE 1338 PG+PESF VL++E++ L +N++ Sbjct: 1425 TYTPGIPESFKVLVRELKGLSLNVK 1449 >UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella RepID=D1BP72_VEIPT Length = 1386 Score = 1105 bits (2858), Expect = 0.0, Method: Composition-based stats. Identities = 584/1404 (41%), Positives = 803/1404 (57%), Gaps = 154/1404 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M KR R + K +V+ +P+LL IQ S++ F+E GL+ F + PI+ Sbjct: 1 MFKPEQVGKRTRYTYAKINEVIKMPHLLDIQRKSYEWFLES------GLQNIFNDISPIK 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 SGN L + + LGEP +D+ EC+ R TY+APLRV +RLV + E DIKEQ Sbjct: 55 DNSGNLVLSFEGFSLGEPKYDINECKNRDATYAAPLRVNIRLVNNDPENM-----DIKEQ 109 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMTD GTF+ING ERVIVSQL RSPGV+++ + + G LY++ +IP R Sbjct: 110 EVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGVYYNKE---IDTMGNRLYDSTVIPNR 166 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEI------- 232 G+W++ E D + + VRIDR RKLPAT+++RAL + T + ILDLF+ E Sbjct: 167 GAWIELETDASEVVAVRIDRNRKLPATVLVRALGWDTNESILDLFWNGKTDEDGLPVYDE 226 Query: 233 ------------RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLE 278 ++ +E+ + GE + + N ++ + R AR R Sbjct: 227 RIVRTLEKDTTQSADEALVEIYKKLRPGEPPTVESARNLFDNLFFDARRYDLARVGRYKL 286 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + + G+ +A+ +D TGE+I A +++ G ++++ + Sbjct: 287 NKKLGW----RQRMLGQTLAQPIVDPETGEIILDAGVQV-----------GEEQLDIVAN 331 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + + G +E V+ D Sbjct: 332 SHVFDGEGFAEFYIVNN----------------------------------------DGV 351 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 + N +L ++++D+I + L+++ +G G DDIDHLGNRR+R VGE Sbjct: 352 ESKVICNNCNL----PYDHRTVTREDMIANISYLLNLMDGAGHTDDIDHLGNRRLRCVGE 407 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQFR+GL R+ER V+ER+++ + +++ PQ +IN +P+ AA+KEFFGSSQLSQFMDQ Sbjct: 408 LLQNQFRIGLTRMERVVRERMTIQETESITPQALINIRPVVAAIKEFFGSSQLSQFMDQT 467 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSLS Y Sbjct: 468 NPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNY 527 Query: 579 AQTNEYGFLETPYRKV-------------TDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 A+ NE+GF+E PYRKV V+D + Y++A EE IAQANS LD Sbjct: 528 AKVNEFGFIEAPYRKVEKVYGKGKDADKVVKVRVSDSVVYMTADEEEGMTIAQANSPLDA 587 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 EG+F + V CR + + D+VDYMDVS ++VVS+G ++IPFLE+DDANRALMGANM Sbjct: 588 EGYFTTEHVACRRGHDVLEVTPDKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANM 647 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQAVP LRA PLVGTGME A DSGV +A+ G V + I + + + Sbjct: 648 QRQAVPLLRAQAPLVGTGMEYTAATDSGVCVLAREAGKVVRCWGNEIHVLRD------SD 701 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +D Y L K+ RSNQ+TC NQ P V+ G+ V +G VLADGP+TD GELALG N+ VAFM Sbjct: 702 GRVDTYRLNKFLRSNQSTCFNQKPIVNRGDHVVKGQVLADGPATDGGELALGYNVLVAFM 761 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PW GYN+ED+IL+SE + +ED +T+IHI+E C +RDTKLG EEIT ++PN G+ L L Sbjct: 762 PWEGYNYEDAILLSEELCKEDIYTSIHIEEYECDARDTKLGAEEITRELPNTGDDTLKNL 821 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE GI+ IGAEV GDILVGK TPKGET+LTPEE+LLRAIFG+K +V+D+SLRVP+G S Sbjct: 822 DEDGIICIGAEVHPGDILVGKATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGES 881 Query: 926 GTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G V+DV+VFTR +G E ++ + + Q +K + G + V+ + Sbjct: 882 GKVVDVKVFTRENGDELQPGVNKLVRVYIAQKRKIHEGDKMAGRHGNKGVVSRVMRKEDM 941 Query: 985 EAEKLDKLPRDRWLE------------------------LGLTDEEKQNQLEQLAEQYDE 1020 D P L LG+ + ++ + ++ Sbjct: 942 PF-LPDGTPVQIVLNPLGVPSRMNIGQVLETHLGWAVQGLGMKIKATDLHIQNVLKE-AR 999 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 + ++++A R Q + L V + V V + K +KI Sbjct: 1000 TDASYWEQIDAIRDLYAQIEALEAKVSEDVTVNHFEENEQIITLK-----------TKIL 1048 Query: 1081 PIED--MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 + + + L +E D + Sbjct: 1049 KHVEKAAQKKLDAMGGEARFQELKAIEAKYNALHVEFFDSEEEAPEMDPALVEELEAISK 1108 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 K + + +K S D + + + G+ IATPVFDGA E ++ E Sbjct: 1109 VKNTLNNIHSAEEKRVEIRKELESLGYDFDKYGMPKPDVAGIHIATPVFDGAHEKDVFET 1168 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L + P G+ LYDGRTGE + VTVGY+YMLKL+HLVDDK+HARSTG YSLVTQQP Sbjct: 1169 LAIAGRPDDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQP 1228 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G + EPG Sbjct: 1229 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKAYEKIVKGENIPEPG 1288 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +PESF VLLKE++S+G+++++ +E Sbjct: 1289 VPESFKVLLKELQSIGLDVKILNE 1312 >UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC1_9BACT Length = 1258 Score = 1084 bits (2802), Expect = 0.0, Method: Composition-based stats. Identities = 571/1367 (41%), Positives = 808/1367 (59%), Gaps = 153/1367 (11%) Query: 13 KDFGKRPQVL--------DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQ 60 K + + ++P LL++Q+DSF F+++D Q GL+A F ++FP++ Sbjct: 5 KSYSRISGRFAELGIPEVEIPNLLAMQVDSFNDFLQKDIHPQRREKKGLQAVFENIFPLE 64 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 GN L+++ Y + + + ++EC+ R ++Y APL+ K+RL ++E KD EQ Sbjct: 65 DTKGNFLLEFIEYNVLQEKYSLEECRERNLSYQAPLKAKMRLSVFENREGVREHKDTLEQ 124 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV++GEIPL+T+ GTFVING ERVI+SQL RSPGVFF +K H SGK LY+A++IPY Sbjct: 125 EVFLGEIPLITEQGTFVINGAERVIISQLQRSPGVFFSEEK---HPSGKTLYSAKVIPYS 181 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQM 239 GSWLDF+ D D +FV ID+RRKLP T + RA+ + E + F++ +++ K Sbjct: 182 GSWLDFDIDIHDVMFVHIDKRRKLPVTTLFRAIGISTNEDLRKTFYKSEKLNLKEAK--- 238 Query: 240 ELVPERLRGETASFDIEANGK--VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 G DI G +IT I+ L + Sbjct: 239 --------GRHLFADIYEKGNPEPIAMANEQITDSLIKFLSERK---------------- 274 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 ++E + N + T+ DPT Sbjct: 275 --------------------------------ITKVEVIDYNYEIARKVLENTMAKDPTT 302 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 ++ AL +IY ++RPGE EAA+ L + +FF+E RY+L VGR K N L Sbjct: 303 NQEEALKKIYNLIRPGEDAPLEAAKQLVDRMFFNEKRYNLGEVGRYKINSRLGINVDPKI 362 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 L+ +D + + K LI+I + + EVDDID+L NRR+R+VGE+ + Q+ +G+ V R ++E Sbjct: 363 MTLTVEDFVYIFKTLINIYHDEDEVDDIDNLANRRVRTVGELLQEQYTIGMAMVARIIQE 422 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+++ ++D + D++N+ + + V+ FF + QLSQFM+Q NPL+ + HKR +SALGPGG Sbjct: 423 RMAISNIDEVTVHDLVNSNALISVVQSFFLTGQLSQFMEQTNPLAALRHKRALSALGPGG 482 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI S ++Y++ N +GFLETPYRKV DG Sbjct: 483 LARERAGFEVRDVHSSHYGRICPIETPEGPNIGLIVSPAIYSRINHFGFLETPYRKVVDG 542 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 +TDE YL A +E Y+IAQ++ +LD+ ++++ R +GE S + V YMDV+ Sbjct: 543 CITDEYEYLDASQEEKYIIAQSDVHLDDNRRITDEMIFARDRGEFVQVSPNLVHYMDVAP 602 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 QQ+VSV A+LIPFLEHDDANRALMG+NMQRQAVP + PLVGTGME+ ++D+ AV Sbjct: 603 QQMVSVSAALIPFLEHDDANRALMGSNMQRQAVPLINPQAPLVGTGMEKIASMDTSSIAV 662 Query: 718 AKRGGVVQYVDASRIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 A G+V V ++ I +K NE + + + +L K+ R+NQ+TCINQ P V +G+ Sbjct: 663 APYDGIVTKVTSAFIDLKPLNEKDEAYYLSTGNRIHLKKFVRTNQDTCINQRPIVRVGDT 722 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 V++G ++DG + LALG N+ VAFMPW GYN+ED++++SE+V +ED T+I+I+EL Sbjct: 723 VKKGQPISDGACVEDNRLALGTNLMVAFMPWYGYNYEDAVILSEKVAREDTLTSIYIEEL 782 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG-ETQL 895 + R+ K G EE+ DIPNV AL LD++GI+ +G+ + GDI+VGKVTPK E Sbjct: 783 EVLVRNVKNGREELAYDIPNVPAQALRNLDKTGIIRVGSVIHAGDIIVGKVTPKSVEIDP 842 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD------------- 942 +PEE L+RA+FG++A D +SSL+ G+ G VIDV+VF+R D Sbjct: 843 SPEENLMRALFGDRAGDFTNSSLKAKPGMEGVVIDVKVFSRLEEGSDLEEENEDKIEKLK 902 Query: 943 ----KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW- 997 R +IEE + ++ L ++ + I + + + L ++ + Sbjct: 903 EELALRRSKIEEFKEEKLSAVLVGQIAKNIWDEKTNIPFIAPGKKITKQDLKRINFKKLD 962 Query: 998 --LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 +EL E Q+ + + + + + R +I GD+L GV K+VKVY+A Sbjct: 963 LDVELVEDREVNDYIYSQIVLKIKQSLEQSDNIYKKSRERIKHGDELQYGVRKMVKVYVA 1022 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 KR+I+ GDKMAGRHGNKGVIS I PIEDMP+ E+GTPVDIVLNPLGVPSRMNIGQI+ET Sbjct: 1023 KKRKIEVGDKMAGRHGNKGVISIIAPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQIMET 1082 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 HLG AAK +G ++ + + +++A Sbjct: 1083 HLGWAAKTLGFEVETPIFDGASNEDIVSELRKAGLP------------------------ 1118 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + K +L G+ +GE F+ VTVG +YM+KL Sbjct: 1119 -----------------EDGKTVL------YDGK-------SGEPFKERVTVGIIYMMKL 1148 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 NHLV DKMHARSTG YSL+TQQPLGGKAQ GGQR GEMEVWALEAYGAA L+EMLT+KS Sbjct: 1149 NHLVADKMHARSTGPYSLITQQPLGGKAQHGGQRLGEMEVWALEAYGAASVLEEMLTIKS 1208 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 DDV+GR +K I G++ PG+PESFNVL+ E++SLG +IE E Sbjct: 1209 DDVDGRNNAFKAITRGDNPPPPGVPESFNVLISELKSLGFDIEFIKE 1255 >UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax=Planctomycetales RepID=RPOB_RHOBA Length = 1240 Score = 1069 bits (2763), Expect = 0.0, Method: Composition-based stats. Identities = 565/1357 (41%), Positives = 786/1357 (57%), Gaps = 153/1357 (11%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSY 62 E IRK FG D+P L ++Q S+ F+++D +GLE+ R +FPI SY Sbjct: 10 EPTSIRK-FGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVLREIFPIASY 68 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 GN+ L+Y+ Y LG+P + +QEC+ +TY PLR+ LRL ++ E+EV Sbjct: 69 DGNTTLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRL----------NREEPIEEEV 118 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 Y+G++P+M G F+ING ERV+VSQLHRSPGV F ++ T + + L + R+IP RGS Sbjct: 119 YLGDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFVLEQDTT--TDRKLPSCRVIPERGS 176 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALN---YTTEQILDLFFEKVIFEIRDNKLQM 239 W++ KD L VRID+ K AT++LRA++ T +L F+E ++ K Sbjct: 177 WIEVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLSAFYETGTIKVNGGK--- 233 Query: 240 ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 K + K+ V Y +G Sbjct: 234 ------------------------------------DATKIENKIAVDDVVYPSGH---- 253 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 E GE+I A +++ +L + +G +E + DL P I TL D T Sbjct: 254 ----ERAGEIIVEAGYKITTELSETICNAGVTSVEAM---DLPKVPLIFNTLADDNTASH 306 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL+ IY+ +RPG PP E A +LF+ F+ ++RY L VGR + NR L E Sbjct: 307 EEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLGLGVEETVMT 366 Query: 420 LSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 L DD+I ++ LID+ + E+DDIDHLGNRR+R++ E+A + R G +++ R V+E Sbjct: 367 LRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGFLKLRRTVQE 426 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+S+ D + P+ +IN K +SAA+ FFG +LSQ +DQ NPLS++ H+RR+SALGPGG Sbjct: 427 RMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLAHERRLSALGPGG 486 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L R+RAGFEVRDVH +HYGR+CPIETPEG NIGLI+SL++YA ++YGFL TP+RKV DG Sbjct: 487 LNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLCTPFRKVIDG 546 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 ++DE +L A EEG +A A++ + + + R + + + +QV +MDV+ Sbjct: 547 KISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPEQVSFMDVAP 606 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 Q+V V A LIPFLEHDDANRALMG+NMQRQAVP L + P+VGTGMER VA +S + Sbjct: 607 AQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREVAKNSAMVVR 666 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+R G V Y DA+RI E G D Y L KY N+ TC NQ P +++G+ V Sbjct: 667 ARRAGKVTYADATRI------------EIGSDHYPLKKYQGLNERTCQNQKPLITVGDKV 714 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+G ++ADG +T GELALG+N+ V FM ++G+N+ED+I++SE +V+ D +T+IHI++ Sbjct: 715 EKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTYTSIHIEDFD 774 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R+TKLG EE T DIPNV E AL LD++GIV G V GDILVGKV+PK +T+LTP Sbjct: 775 VEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVSPKSKTELTP 834 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 EEKLL AIFG DVK+ SL VP+G+ G VID Q F+R + E + Sbjct: 835 EEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLGEDERKAFERELKQHET 894 Query: 958 K-------DLSEELQILEAGLFSRIRA-------VLVAGGVEAEKLDKLPRDRWLELGLT 1003 + ++ +E +++ AE+ + LE Sbjct: 895 EGNEEIASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAERATSFRLELVLEQIED 954 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 +E+++ + Q+ ++ +++ + K + +GD+L GVL++VK+Y+A KR I G Sbjct: 955 EEKRKAAEKVHQTQWQNVEQAIDER-DRKLNSMKRGDELRSGVLQMVKIYIATKRTISVG 1013 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DKMAGRHGNKGVI+KI PIEDMP+ +GTP+ I+LNPLGVPSRMN+GQILETHLG A Sbjct: 1014 DKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAK 1073 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 +G + + +++ + + A + D T E Sbjct: 1074 LGFQALTPIFDGASESEINDCLAEAGLPAHGKIRLTDGRTGEPMEQETTVG--------- 1124 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 + MLKL+HLVDDK+ Sbjct: 1125 ----------------------------------------YIY-----MLKLHHLVDDKV 1139 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HARSTG YSL+TQQPLGGKA+FGGQRFGEMEVWALEAYGAAY LQE+LTVKSDDV GRTK Sbjct: 1140 HARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTK 1199 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +Y+++V G + +E G P SF+VL EIR L +N++LE Sbjct: 1200 IYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLE 1236 >UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria RepID=C1A6N7_GEMAT Length = 1522 Score = 1048 bits (2710), Expect = 0.0, Method: Composition-based stats. Identities = 547/1214 (45%), Positives = 757/1214 (62%), Gaps = 76/1214 (6%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGNSELQ 69 F K +D+P+LL IQ +F+ ++ D GLE F+ +FPI N L+ Sbjct: 5 SFAKLETGMDMPHLLDIQTRAFESLLQLDAASQEREDVGLERVFKDLFPITDVHENFSLE 64 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 +V Y LGEP + V EC R +TYSAPL+ L+LVI+E ++I E+EVY+GE+PL Sbjct: 65 FVRYSLGEPKYTVAECIERDMTYSAPLKATLQLVIFEDTGDGKRPRNIIEKEVYLGELPL 124 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 +T+ GTFVING ERVIVSQLHRSPGV F+ TH +G+ L ++RIIP+RGSW++F D Sbjct: 125 LTELGTFVINGAERVIVSQLHRSPGVVFEE---STHPNGQRLLSSRIIPFRGSWVEFTVD 181 Query: 190 PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 D ++V ID+++K PAT +LRA Y IL LFF + ++ K + + G Sbjct: 182 IHDVIYVHIDKKKKFPATALLRAFGYGENRDILRLFFAERDLDLTK-KRETRNDQREVLG 240 Query: 249 ETASFDIEANGKV------------------------YVEKGRRITARHIRQLEKDDVKL 284 + DI G+V V +G +T + +L + +K Sbjct: 241 AIIAEDITLEGEVTAADAPKPKTKKAKAERERSEAELLVREGDELTEEVLNRLVRQGIKT 300 Query: 285 IEVPVEY-----------------IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 +++ Y +++A+D ID+ TGE++ + L+ ++ ++ + Sbjct: 301 VKMFASYTQIDLRDEQDAIDRGEREVRRMLARDVIDQDTGEVVAEKDTTLTDAVIKRIRK 360 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 + ++ + I TL DPT AL +IY ++RPG+ P RE A+ E Sbjct: 361 ADIVKVFVFVASGRAESTLIKNTLAKDPTKAEEEALKQIYALLRPGDAPNRETAKQALER 420 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 LFFS RYDL VGR K N+ L + +L+K+D +++M++L+++ G+G+VDDID Sbjct: 421 LFFSPKRYDLGRVGRYKINQRLRLNTPMRTTVLTKEDFVEIMRQLVELHEGRGDVDDIDQ 480 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-DLDTLMPQDMINAKPISAAVKEFF 506 LGNRRIRSVGE+ NQF VGL R+ R VKER+S+ D + + D++NA+ +SA ++ FF Sbjct: 481 LGNRRIRSVGELIANQFSVGLSRMARLVKERMSINTDPEKISLDDLVNARTVSAVIQAFF 540 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 GSSQLSQFMDQ NPL+E+THKRR+SALGPGGLTRERAGFEVRDVH + YGR+CPIETPEG Sbjct: 541 GSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSQYGRMCPIETPEG 600 Query: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE 626 PNIGLI SL+ +AQ N+ GF+ETPYR V +G VT EI +L A E + +IAQANS L+ + Sbjct: 601 PNIGLITSLACFAQVNDLGFIETPYRIVKEGRVTGEIVWLDANREEDAIIAQANSKLNPD 660 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 G FV+DLV R +G+ L +DYMDV+ +Q+VS+ A+LIPFLEHDDANRALMG+NMQ Sbjct: 661 GTFVDDLVLSRKRGDLPLEPPMNIDYMDVAPEQLVSIAAALIPFLEHDDANRALMGSNMQ 720 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV-------IKVNED 739 RQAVP L P VGTG+E VAVDSG +A+R GVV V A I+ V++ Sbjct: 721 RQAVPLLNPATPFVGTGLEATVAVDSGAVIIARRPGVVTNVTADEIIIDAGLNQEAVDDG 780 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 +D Y L KY R+NQ+T INQ P V +G+ V +G+VLADG +T++G+LALG+N Sbjct: 781 RPLTRLGQLDRYRLKKYWRTNQDTAINQRPLVRMGQTVAKGEVLADGAATEMGQLALGRN 840 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + VAFMPW G+NFED+I++SER+V+ D F++IHIQEL RDTK G EEIT +IPNV E Sbjct: 841 VTVAFMPWYGHNFEDAIVLSERLVKFDVFSSIHIQELELHVRDTKRGQEEITREIPNVAE 900 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 +L LDE GIV IGA V GDILVGK+TPKGET+L+PEEKLL AIFGEKA DVKDSSL+ Sbjct: 901 ESLVDLDERGIVRIGAAVKAGDILVGKITPKGETELSPEEKLLTAIFGEKAKDVKDSSLK 960 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI---- 975 V G+ G VIDV++F+R + ++ ++++ + + + + SR+ Sbjct: 961 VSPGMEGVVIDVKIFSRVEDQVVEKDRGERIGEVRRLEGEEKIRVNEVRDAELSRLLEGE 1020 Query: 976 ------------RAVLVAGGVEAEKLDKLPRD--RWLELGLTDEEKQNQLEQLAEQYDEL 1021 A+ + E LD L + +++ +++ + + E Sbjct: 1021 TVALALKAGTVEEAIGAGTTLTREILDGLRFATLDLKTFRVENKKANDRVRDILDAAAEE 1080 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 K E++ E + +I Q D+L PGV+++VKVYLA KR+I GDKMAGRHGNKG++++I P Sbjct: 1081 KARIEERAEDRIDRILQPDELPPGVIQLVKVYLAEKRKISVGDKMAGRHGNKGIVARIVP 1140 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ NG PVDIVLNPLGVPSRMN+GQILETHLG AAK + + + ++ Sbjct: 1141 EEDMPFLPNGRPVDIVLNPLGVPSRMNVGQILETHLGWAAKLLNFYAKTPVFEGANEREI 1200 Query: 1142 REFIQRAYDLGADV 1155 ++ A A Sbjct: 1201 GLLMKLAGLRWARE 1214 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 105/152 (69%), Positives = 127/152 (83%) Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 D +A EL++L L +G++RL DGRTGE F PVTVG +YMLKL+HLVDDK+HARS Sbjct: 1347 DADVDAAASELIRLAGLTPTGKVRLRDGRTGETFTAPVTVGEIYMLKLSHLVDDKIHARS 1406 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 G YSLVTQQPL GKAQFGGQRFGEMEVWALEAYGAA+TLQE+LTVKSDDVNGR+++Y+ Sbjct: 1407 IGPYSLVTQQPLAGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVNGRSRVYEA 1466 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G + EPG+PESFNVL+KE+++LGI + L Sbjct: 1467 IVKGQNLPEPGIPESFNVLVKELQALGIKVTL 1498 >UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 Tax=cellular organisms RepID=RPOB_PELPD Length = 1499 Score = 1045 bits (2703), Expect = 0.0, Method: Composition-based stats. Identities = 597/1161 (51%), Positives = 793/1161 (68%), Gaps = 39/1161 (3%) Query: 210 LRALNYTTEQILDLFFEKVIFEIR--DNKLQMELVPERLRGETAS--FDIEANGKVYVEK 265 R L I F + ++ + +++ +E+ G+ + + ++ Sbjct: 341 FRLLFIDNLHITSSFRDTLLMDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNP 400 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYI---AGKVVAKDYID-ESTGELICAANMELSLDL 321 R + R + L P + A+D + L+ AA+ S + Sbjct: 401 ERYDLSAVGRLKLNFKLGLKVWPECTVLNAPCMFGAEDIASFDELFRLLLAADNRFSQYV 460 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 LA+L + K + + E L + N + + G +++ Sbjct: 461 LARLPEDFVK-VLRKHEPSQPVAEKLREQLLKELNNLVKDPDFY-QKELFTGLALSQQTV 518 Query: 382 --ESLFENLFFSEDRYDLSAVGRMK-FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 E F E+R + + R + L + S K+DI+++++ LID++NG Sbjct: 519 ALTEAIEGGVFEENRRVIEVLRRNRMIFEDLYAPVVLTSP---KNDILEIVRYLIDLKNG 575 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPI 498 +G +DDIDHLGNRR+R+VGE+ ENQ+R+GLVR+ERA+KER+SL +++ LMP D+IN+KP+ Sbjct: 576 RGAIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSKPV 635 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 SA VKEFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRV Sbjct: 636 SAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRV 695 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CPIETPEGPNIGLI SLS YA+ N++GF+ETPYR V DG +T+E+ + SA+EE + IAQ Sbjct: 696 CPIETPEGPNIGLIASLSTYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEGHAIAQ 755 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 AN+ +D EG FV D V+ R GE L RD+++ MDV+ +Q+VSV A+LIPFLE+DDANR Sbjct: 756 ANAEVDAEGRFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDANR 815 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 ALMG+NMQRQAVP LRAD PLVGTGMER VA DSGV+ +A+ GVV+ VDASRIV+K++E Sbjct: 816 ALMGSNMQRQAVPLLRADSPLVGTGMERIVAKDSGVSVIARHNGVVESVDASRIVVKIDE 875 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 E+ G+DIYNL K+ RSNQNTCIN P V +G+ V+R DV+ADGPSTD+GELALGQ Sbjct: 876 SEVDETGTGVDIYNLIKFARSNQNTCINNKPVVKVGDVVKRHDVIADGPSTDMGELALGQ 935 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 N+ VAFMPW GYNFEDSILVSE++V++DR+T+IHI+E CV+RDTKLG EEIT+DIPN+G Sbjct: 936 NIVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEYECVARDTKLGKEEITSDIPNLG 995 Query: 859 EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 E AL LDESGI+ IGAEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+D+SL Sbjct: 996 EEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDTSL 1055 Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 VP GV GTVI +VF+R G +KD R IE+ + ++ +KD +E++I+ ++ + Sbjct: 1056 TVPPGVEGTVIGAKVFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIRQSAEGKLHRL 1115 Query: 979 LVAGGVEAEKLDKLPRDRWLE--------------------LGLTDEEKQNQLEQLAEQY 1018 L+ + + D + D + + + ++ + Sbjct: 1116 LIGKSLSVKLEDGEGNLILAKGKEITAEALKSLSINDMGAISVSDDGQTDDNVSKVIDTL 1175 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + + E K +K+ +GDDL PGV+K+VKVY+A+KR++Q GDKMAGRHGNKGV+S+ Sbjct: 1176 NRQIELIQSVFEDKIQKLRRGDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSR 1235 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I P EDMPY E+G PV+IVLNPLGVPSRMN+GQILETHLG AAKGIG +I ML++Q Sbjct: 1236 ILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWRIEEMLQKQTSA 1295 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 L+ +++ Y D + EE+M + L++G+ +A+PVF+GA E +IK + Sbjct: 1296 ESLKAYLKDVY---GDDEVGTFIDGMDQEELMLVCRRLQRGVSMASPVFEGASEDKIKSM 1352 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L +SGQ+ L+DGR+G+ F+ VTVG MY+LKL+HLVDDK+HARS G YSLVTQQP Sbjct: 1353 LGKAGFHSSGQVTLFDGRSGDPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYSLVTQQP 1412 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQFGGQR GEMEVWA+EAYGAAY LQE LTVKSDDV+GRT+MY+ IV G H +EPG Sbjct: 1413 LGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVSGRTRMYEAIVKGKHTLEPG 1472 Query: 1319 MPESFNVLLKEIRSLGINIEL 1339 +PESFNVL+KE++SL +++EL Sbjct: 1473 LPESFNVLIKELQSLCLDVEL 1493 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 288/1163 (24%), Positives = 491/1163 (42%), Gaps = 153/1163 (13%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 M YS +RK F K ++D+P L+ IQ +S+++F++Q+ GLEA FRSV Sbjct: 1 MAYSIANNHLLRKTFTKIKNIIDIPNLIDIQKNSYRRFLQQEGVSESRNNTGLEAVFRSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTV 114 FPI+ +S ++ L+YVSY L +P +DV EC RG+T++AP++VK+RLVI++ +E+ + Sbjct: 61 FPIKDFSESASLEYVSYSLSKPKYDVVECHQRGMTFAAPMKVKVRLVIWDTGKESGIRAI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 KDIKEQEVY GEIPLMTDNGTF+INGTERVIVSQLHRSPGVF+D DKGKTHSSGKVLY+A Sbjct: 121 KDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLDFEFD KD L+VRIDRRRK+PAT++L+AL Y+ EQ+L+ +++ + Sbjct: 181 RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSAEQLLNYYYKSEEIFLTG 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + E L + A D+ +G+V V+ R+ T IR++ + D+K + + + I Sbjct: 241 ETPSKSIDAELLTLQKALVDVVDPKSGEVIVKANRKFTKASIRKMVEHDIKAVPITFDSI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ + D ID +TGE++ N E++ + ++ G + LF ++L +TL Sbjct: 301 IGRYASSDVIDPATGEVLLECNEEVTAEKFDEIKAKGVESFRLLFIDNLHITSSFRDTLL 360 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 +D + AL+EIYR +RPG+PPT +++ +LFENLFF+ +RYDLSAVGR+K N L + Sbjct: 361 MDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNPERYDLSAVGRLKLNFKLGLK 420 Query: 413 EIEGSGILSK-----------------------------------DDIIDVMKK------ 431 +L+ +D + V++K Sbjct: 421 VWPECTVLNAPCMFGAEDIASFDELFRLLLAADNRFSQYVLARLPEDFVKVLRKHEPSQP 480 Query: 432 --------LIDIRNGKGEVDDIDHLGNRRIRSVGEM------AENQFRVGLVRVERAVKE 477 L+ N + D D + + + + G+ R V E Sbjct: 481 VAEKLREQLLKELNNLVK--DPDFYQ-KELFTGLALSQQTVALTEAIEGGVFEENRRVIE 537 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM----DQNNPLSEITHK--RRIS 531 L ++ +D+ +++ + ++ +++ + + +I H RR+ Sbjct: 538 VLRRNR---MIFEDLYAPVVLTSPKNDIL---EIVRYLIDLKNGRGAIDDIDHLGNRRVR 591 Query: 532 ALG-------PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 A+G GL R + R ++ + +L + N Sbjct: 592 AVGELLENQYRIGLVRMERAIKERM------------------SLQEVENLMPHDLINSK 633 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----IAQANSNLDEEGHFVEDLVTCRSK 639 ++ + + + E + + + G V D+ Sbjct: 634 PVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYG 693 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP---TLRAD 696 + + + + +++ S A + + R ++ + + Sbjct: 694 RVCPIETPEGPNIGLIASL---STYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEG 750 Query: 697 KPLVGTGMERAVA-VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 + E A++ G V I + + A I L Sbjct: 751 HAIAQANAEVDAEGRFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLEN 810 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED- 814 +N+ + M P+ + AD P G VA +D Sbjct: 811 -DDANRALMGSNM--QRQAVPL----LRADSPLVG-----TGMERIVA---------KDS 849 Query: 815 --SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 S++ V E + + ++ D +I I + ++ +V Sbjct: 850 GVSVIARHNGVVESVDASRIVVKIDESEVDETGTGVDIYNLIKFARSNQNTCINNKPVVK 909 Query: 873 IGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVSGTV 928 +G V D++ G T GE L + ++ A + +DS S ++ T Sbjct: 910 VGDVVKRHDVIADGPSTDMGELAL--GQNIVVAFMPWGGYNFEDSILVSEKLVKDDRYTS 967 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS--EELQILEAGLFSRIRAVLVAGGVEA 986 I ++ + + EI ++ L +E I+ G + +LV Sbjct: 968 IHIEEYECVARDTKLGKEEITSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITPK 1027 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + P ++ L ++ + L K+ +++ Sbjct: 1028 GETQLSPEEKLLRAIFGEKAGDVRDTSLTVPPGVEGTVIGAKVFSRKGADKDTRTELIEK 1087 Query: 1047 LKIVKVY------LAVKRRIQPG 1063 + K+ + + R+ G Sbjct: 1088 AEEEKLRKDEQDEIRIIRQSAEG 1110 >UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria RepID=C6HVV1_9BACT Length = 1729 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 539/1120 (48%), Positives = 725/1120 (64%), Gaps = 90/1120 (8%) Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE------YIAGKVVAKDYI 302 ET S E V V ++ +++D +I + E + V + Sbjct: 662 ETLSQISEHKKLVLVRSKHEDLRVLVQSSQENDGNIITLTTEKPVTMQDLQSYVHMFELE 721 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS- 361 + G + L +S + +++ + E L + R+ Sbjct: 722 EPKKGNPYKKEGELFEFEDLDVAKKSKKNNVSLVYSATNKSHDLLLELLDLAKNPHRIES 781 Query: 362 --ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+VEIY+ +RPGE P E A F+ FF+ RYDLS+VGR+K N L E + + Sbjct: 782 DPAVVEIYKKIRPGEVPHVETARQFFDQSFFNSKRYDLSSVGRLKLNSKLGIRESLSNRL 841 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+K DI++V++ ++D+ KGE+DDIDHLGNRR+RSVGE+ ENQFR+GLVR+ERA+KERL Sbjct: 842 LTKSDIVEVIRYMVDLLENKGEIDDIDHLGNRRVRSVGELLENQFRIGLVRMERAIKERL 901 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 +LGD ++++ D IN KP++A +KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGLT Sbjct: 902 NLGDPESVISSDPINVKPVTAIIKEFFGSSQLSQFMDQTNPLAEVTHKRRLSALGPGGLT 961 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N++GF+E+P R V +G+ Sbjct: 962 RERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGFIESPVRVVENGIA 1021 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 EI YLSA++ Y+IAQA++ LD+ G E V+ R KG+ S DQV Y+DV+ QQ Sbjct: 1022 KPEIVYLSAMDGDKYIIAQASTKLDQNGALTEPQVSARFKGDFISVSPDQVQYIDVAPQQ 1081 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VSV +LIPFLEH+DANRALMG+NMQRQAVP LR PLVGTGME+ VA DSG A Sbjct: 1082 IVSVATALIPFLEHNDANRALMGSNMQRQAVPLLRPSAPLVGTGMEKVVARDSGYVIYAT 1141 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G V +D + +K G+ Y L K+ RSNQNTC+NQ +S ++ Sbjct: 1142 EDGEVVKIDGTSFTVKY-------KNTGLKTYPLIKFRRSNQNTCLNQKVLLSPRTKFKK 1194 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 GDVL DGPST+ G+LA+GQN+ VAFMPW GYNFED+IL+SER+V++D FT+IHI+E Sbjct: 1195 GDVLVDGPSTERGDLAMGQNVLVAFMPWGGYNFEDAILISERLVRDDMFTSIHIEEFELE 1254 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 +R+TK G EEIT DIPN+ + AL LDE GIV IGAEV GDILVGKVTPK ETQLTPEE Sbjct: 1255 ARETKQGKEEITRDIPNLSDEALKNLDEGGIVRIGAEVKPGDILVGKVTPKAETQLTPEE 1314 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM--QLKQAK 957 +LLRAIFG+K+++ KD+SL VP G+ G V+DV++ +R G+EK++ + + Sbjct: 1315 RLLRAIFGDKSANWKDASLTVPAGIEGIVVDVKILSRKGIEKEEAVMAAPMHGQDIGSLT 1374 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE------------------ 999 EL+ +E +I+A L+ ++ + LD D L+ Sbjct: 1375 HAYQGELRKVEEEKKEKIKAFLLGKVIKEDILDAETGDVILKKKRRLTTDTLEKLADYSA 1434 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + L+D+++Q++L+ + + E + + + + ++ +GD+LAPGVLK+VKVY+A+KR+ Sbjct: 1435 ITLSDQKEQDELQAIESRTKEKIEAIQMRHDERIGRLKKGDELAPGVLKLVKVYVAMKRK 1494 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 + GDKMAGRHGNKGV+S+I P+EDMP+ +GTPVDI+LNPLGVPSRMN+GQILETHLGM Sbjct: 1495 LSVGDKMAGRHGNKGVVSRIVPVEDMPFLPDGTPVDIILNPLGVPSRMNVGQILETHLGM 1554 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 AA+ +G + + +++ +++ + VD Sbjct: 1555 AARALGLHVATPVFDGATEEEIKAMLKKGGISETGQTRLVD------------------- 1595 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 G+ TGE FERPVTVG MYM KL+HLV Sbjct: 1596 ----------------------------GK-------TGEVFERPVTVGVMYMFKLHHLV 1620 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWAL+AYGAA TLQE LTVKSDDV+ Sbjct: 1621 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVKSDDVS 1680 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GR++MY+ IV G + ++PG+PESFNVL+KE++SL ++IEL Sbjct: 1681 GRSRMYEAIVRGENYLDPGLPESFNVLIKELQSLALDIEL 1720 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 195/359 (54%), Gaps = 22/359 (6%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNS 66 +R +FG Q +DV L+ IQ S+++F++ D GL++AF SVFPI+ Y+GN Sbjct: 8 VRHNFGGSQQFIDVQDLIEIQKRSYERFLQLDVPPSLREDSGLQSAFLSVFPIEDYNGNY 67 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV-----------K 115 + ++ Y LGEP ++ EC RG+TY+APL++K+R+ E+ K Sbjct: 68 RIDFIEYSLGEPKYEEYECLERGMTYAAPLKIKIRIAALEQNKEIDKTSPLSKEPSFSVK 127 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +KE+E Y+G++PLMT GTF+INGTERV+VSQLHRSPGVFF DK KT +G L+ +R Sbjct: 128 YMKEEEKYLGDLPLMTTKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRLTGTPLFTSR 187 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 IIPYRGSW+DFE+D KDNL+VRIDR++K PATI+L+A+ T+ ++ ++ +I+ Sbjct: 188 IIPYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTSADVVKEYYNIETLQIKPG 247 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ++ G T F ++ + + +E ++ + + + Sbjct: 248 APELYAYFPIEPGSTLPFQLKDHDGLVFRDDSVP-------MESAEIMRVLKDRLDLTLR 300 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + + S + ++ + S L+ + G I L + D E+ + Sbjct: 301 FQGEGVDEVSIPNIRFFSDSKTSGILIPIVGGRGSAGIAPLLSKDASDLLSKLESKLSE 359 >UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Tax=Bacteria RepID=RPOB_SULMW Length = 1328 Score = 972 bits (2511), Expect = 0.0, Method: Composition-based stats. Identities = 522/1354 (38%), Positives = 778/1354 (57%), Gaps = 135/1354 (9%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFP 58 + +T++K I +F + P L IQ+ SF F + G F FP Sbjct: 12 FPFTKEKTI--NFASVRNKISYPDFLDIQIKSFTNFFCINYTYKNISNKGFYKVFIEYFP 69 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK--- 115 I + ++SY++ +P++ ++EC RG+TY+ +R + ++ + K Sbjct: 70 ISDSKNKFIIDFISYKIYDPLYSIEECIKRGLTYNVYIRARFKIYRTRKRKITIENKRTK 129 Query: 116 --DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 + Q+VY G P MT +G+F+ NG+ERVIVSQLHRSPGVFF + + Sbjct: 130 YFETIYQDVYFGTCPYMTPSGSFIFNGSERVIVSQLHRSPGVFFGQY---DIPNLPKISY 186 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEI 232 ARIIP +GSW++ D + +++ +D +++LP T +LRAL YT + IL++F I Sbjct: 187 ARIIPLKGSWIELSTDINNVMYIYLDIKKRLPITTLLRALGYTRDIDILNIFNLAEEVNI 246 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + ++ G T + I E+ + R+I+ Sbjct: 247 NK------VNYKKFLGRTLAARIFKTSYQKFEENDILLERNIK----------------- 283 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 + + L K+ + +L + I TL+ Sbjct: 284 -------------------LKKYHIDIILYYKIKVISLYKKNEKNEKNL-YYSIIHNTLK 323 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 DPTN + A + IY+ ++ P + A+ FF E L VGR K N++L + Sbjct: 324 KDPTNSQKEANIYIYKELKDSFPKNDKKAKLFINKFFFDE--THLGEVGRYKLNKTLKLD 381 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 IL+ +DII +++ LI + N K EVDDID+L NRR+++VGE Q+ +G+ RV Sbjct: 382 FPLKDQILNIEDIISIIENLIALCNNKKEVDDIDNLANRRVKTVGEQLYTQYTIGIARVS 441 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 R +KER+++ D +TL P ++IN+K +++ + FFG+ +LSQFMDQ NPL+E+THKRRIS+ Sbjct: 442 RIIKERINVKDNETLTPLELINSKTLTSVINSFFGTDELSQFMDQTNPLAEMTHKRRISS 501 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGL+RERAGFE+RDV+ +HYGR+CPIETPEGPNIGLI+SL V+A+ N GF+ETPY Sbjct: 502 LGPGGLSRERAGFEIRDVNYSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFIETPYF 561 Query: 593 KVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 KV G V + Y+S+ +E +I QAN+ L+ + +++ + R + + + ++ Sbjct: 562 KVKKGKVVINEAPIYISSDQEYGKLITQANAILNYKTGVLKNNIIVRVNADFPMVNYKKI 621 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +Y+DVST Q+ S+ ASLIPFLEHDDANRALMG+NM RQ+VP L P+VGTG+E+ +A Sbjct: 622 NYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGLEKHLAQ 681 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDE---MYPGEAGIDIYNLTKYTRSNQNTCINQ 767 A+ G+V+ VDA+ I +K E + E I Y L K+ ++NQNTC+N Sbjct: 682 YVNALIYAEGDGIVESVDANNIKVKYFNSEKEKLLSFEKRIKTYKLIKFRKTNQNTCLNI 741 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V G V +G VL +G +T G+LALG+N++VAFMP+ GYNFED+I++SE+VV+ED Sbjct: 742 RPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDAIVISEKVVREDW 801 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI E + RDTKLG EE T DIPN E KLD+ GI+ IG+EV GD+L+G++ Sbjct: 802 FTSIHIDEYSLEVRDTKLGMEEFTFDIPNFNEENKKKLDKYGIIKIGSEVKPGDVLIGRI 861 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 TPK E + EE L+AIFG+K +K++SL+ + + G VID +++++ ++D++ Sbjct: 862 TPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKADSSLFGVVIDTKIYSKFSSKEDEQKQF 921 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP-------------- 993 + + K+L ++L L + + G + + + +P Sbjct: 922 QIKKLNNKFMKNLKLLRKLLINKLILVLEGSVSEGILNSSYKEIIPKGKILNKLNLKKLL 981 Query: 994 --RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 ++ + + ++ K N + ++ + Y +E + KL+ K+ ++ GD++ G++KI K Sbjct: 982 KNQEIIYQNWVNNKYKNNLVFKIIKFYYLKINELKIKLKRKKNRLLIGDEITSGIIKIAK 1041 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V +A KR+++ GDKM+GRHGNKG++++I EDMPY E+GT VD+VLNPLGVPSRMN Sbjct: 1042 VLIAKKRKLKVGDKMSGRHGNKGIVARIVKEEDMPYLEDGTSVDLVLNPLGVPSRMN--- 1098 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +G +L Sbjct: 1099 ------------LGQIYETILGW------------------------------------- 1109 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + G+ +TP+FDGA EI + + +LP+ G L+DG TGE+F++PVTVG +Y Sbjct: 1110 --AGEKLGINFSTPIFDGASIEEISKYTDIANLPSFGNTYLFDGETGEKFDQPVTVGVIY 1167 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 MLKLNH+VDDKMHARS G YSL+TQQPLGGK++FGGQR GEMEVWALEA+GAA L+E+L Sbjct: 1168 MLKLNHMVDDKMHARSIGPYSLITQQPLGGKSKFGGQRLGEMEVWALEAFGAANILREIL 1227 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 TVKSDDV GRTK Y+ IV PG+PESF+V Sbjct: 1228 TVKSDDVKGRTKTYEAIVKRETIPNPGIPESFHV 1261 >UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Tax=Leptospira RepID=RPOB_LEPBP Length = 1228 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 523/1358 (38%), Positives = 733/1358 (53%), Gaps = 193/1358 (14%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG-----QYGLEAAFRSVFPIQSYSG 64 R R +FGK + +P L+ +Q SF F++ + + GLEA FR FPI+S + Sbjct: 8 RNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESFPIESPNN 67 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + ++Y Y LGEP D QEC+ +++ PL+ +RL+I + +I+EQ VYM Sbjct: 68 DMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKD-------TGEIREQVVYM 120 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G++P+MTD+GTF+ING ERV+VSQLHRSPG+FF D+ + ++AR+IPYRGSWL Sbjct: 121 GDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQV------RDTFSARVIPYRGSWL 174 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +FE D K L +IDR++K PAT++++A+ T E++L LF+ +I Sbjct: 175 EFEMDNKGILVAKIDRKKKFPATLLVKAMGMGTNEEVLRLFYGSSKMKI---AGANPKDL 231 Query: 244 ERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 +RL G DI G+V ++ G +I +I L + VK Sbjct: 232 KRLIGRRTIADIINMETGEVMLDAGSKINEDNISILREMKVK------------------ 273 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 ++ + P + L D ND Sbjct: 274 ------------------------------EVDVIEFPKGKDNPVLINCLEKDGVNDYED 303 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-----G 416 A+ + + +MRPGEP T E AE+ + LFFS +DL VGR K N + Sbjct: 304 AVKKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFSKAD 363 Query: 417 SGILSKDDIIDVMKKL--IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 +L K DII+ ++ L + DDIDHLGNRRIRSVGE+ NQ ++G RVER Sbjct: 364 DRVLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRVERV 423 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +KER+++ + + PQ +I+ KPI+A + EFFGSSQLSQFMDQ NPL+E+THKRR++ALG Sbjct: 424 IKERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLNALG 483 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI S+S +A+ N+YGF+ETPYR V Sbjct: 484 PGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPYRLV 543 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 +G V ++ YL+A +E + +AQ+NS +DE+G F L++ R +G+ S ++ YMD Sbjct: 544 KNGKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQYMD 603 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 ++ QVVSV +LIPFLEHDDANRALMG+NMQRQAVP L + P VGTGME A D+GV Sbjct: 604 LAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYDAGV 663 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 VAK+ GVV VDA+ + IK ++ + I Y L K+ ++NQ TC NQ P VS+ Sbjct: 664 CIVAKKDGVVSKVDATGVWIKEDQSK------EIVHYPLIKFKKTNQGTCFNQKPNVSM- 716 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 +T G+++ RV NG +L+S E +F + + Sbjct: 717 -----------LHTTTGGKVSKVSKERVEVTTPNGEKETHELLLS----DEVQFHAVVKE 761 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 G GE G + G +L P + Sbjct: 762 GQEVGIGAPVAGQII-------KGEKYGDF---------GQILQKGTVLAN--GPSTDAG 803 Query: 895 LTPEE-KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 +L A + + +D+ L +S +I VF+ +E+ + ++ Sbjct: 804 YLALGRNVLVAFMPWEGYNFEDAIL-----ISERIIKDDVFSSIHIEEFEIQARETKLGQ 858 Query: 954 KQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 +Q +D+ +E ++ G + +LV + D P + L Sbjct: 859 EQITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTPKGETDLTPEYKLLHSIFG 918 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 ++ K+ + L + KR GD+LA GV ++VKVY+A KR++ G Sbjct: 919 EKAKEVRDSSLRMPNGFEGTVID----IKRYSRETGDELAAGVEEMVKVYVARKRKLLVG 974 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DKMAGRHGNKGV++++ EDMPY E+G+PVDIVLNPLGVPSRMN+GQI ET LG AAK Sbjct: 975 DKMAGRHGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNLGQIFETQLGFAAKK 1034 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 +G + + +F ++A Q D R G Sbjct: 1035 LGINFETPVFDGASEGDVNDFCKKAGLPENSKFQLYDG---------------RTGEKFI 1079 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 VF GY+YMLKL HLVDDK+ Sbjct: 1080 NQVF---------------------------------------CGYIYMLKLAHLVDDKI 1100 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGA++TLQE+LT+KSDD+ GR + Sbjct: 1101 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDDMLGRAR 1160 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 +Y+ IV G H ++PG+PESFNVL++E+R L ++I ++D Sbjct: 1161 IYEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIIKD 1198 >UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 Tax=Bacteria RepID=RPOB_BACP2 Length = 1196 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 448/1007 (44%), Positives = 623/1007 (61%), Gaps = 73/1007 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 13 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 66 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 67 LEFIDYSLGDPKYPVAESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 119 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F GK +GK + A +IP RG+WL++E Sbjct: 120 PIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGFTATVIPNRGAWLEYE 176 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKV--------IFEIRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL ++++ +ILDL E +K Sbjct: 177 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEILDLIGENEYLRNTLEKDNTENADKAL 236 Query: 239 MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 +E+ GE + + + + + R A R + + + Sbjct: 237 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKL----HIKNRLFNQK 292 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ +D TGE++ L +L K L++G + Sbjct: 293 LAETLVDPETGEILAEKGQILDRRVLDK------------VLPYLENGIGFRKLYPNGGV 340 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 + L I ++ P + G N E Sbjct: 341 VEDEVELQSI-KIYAPSDQ------------------------EGEQVINVIGNAYVEEA 375 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ DII + ++ +G G+ DDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ Sbjct: 376 VKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVR 435 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPG Sbjct: 436 ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPG 495 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS +A+ N +GF+ETPYR+V Sbjct: 496 GLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDP 555 Query: 597 --GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G VT I YL+A EE NYV+AQAN+ L ++G F++D + R +GE+++ R++VDYMD Sbjct: 556 ETGKVTPRIDYLTADEEDNYVVAQANALLADDGSFIDDNIIARFRGENTVVPRNRVDYMD 615 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS +QVVS + IPFLE+DD+NRALMGANMQRQAVP ++ + P+VGTGME DSG Sbjct: 616 VSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGTGMEYVSGKDSGA 675 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPG-EAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + + GVV+ V+A I ++ ED + +D Y+L K+ RSNQ TC NQ P VS+ Sbjct: 676 AVICRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQGTCYNQRPIVSV 735 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V +G++LADGPS + GELALG+N+ V FM W+GYN+ED+I++SER+V++D +T+IHI Sbjct: 736 GDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHI 795 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GD+LVGKVTPKG T Sbjct: 796 EEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDLLVGKVTPKGVT 855 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQ 952 +LT EE+LL AIFGEKA +V+D+SLRVP+G G + DV+VF R DG E ++ + Sbjct: 856 ELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVY 915 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + Q +K + G I +L + D P D L Sbjct: 916 IVQKRKISEGDKMAGRHGNKGVISKILPEEDMPY-LPDGTPIDIMLN 961 Score = 502 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 304/1167 (26%), Positives = 477/1167 (40%), Gaps = 171/1167 (14%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K E++D + M P + +T +F I +V V + R + + + K Sbjct: 101 LINKETGEVKDQDVFMGDFP--IMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGK 158 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 I + +Y ++ + + L + L G + + + + Sbjct: 159 K-GFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEI-LDLIGE 216 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 Y+ TL D T + AL+EIY +RPGEPPT E A+SL ++ FF RYDL+ VGR Sbjct: 217 NEYLRNTLEKDNTENADKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRY 276 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K N+ L + + L + L+D G+ + L R + V EN Sbjct: 277 KINKKLHIKNRLFNQKL--------AETLVDPETGEILAEKGQILDRRVLDKVLPYLEN- 327 Query: 464 FRVGLVRVERA---VKERLSLGDLDTLMPQD--------------------MINAKPISA 500 +G ++ V++ + L + P D I I A Sbjct: 328 -GIGFRKLYPNGGVVEDEVELQSIKIYAPSDQEGEQVINVIGNAYVEEAVKNITPSDIIA 386 Query: 501 AVKEFFGSSQLSQFMDQNNPLSEITHK--RRISALGPGGLTRERAGFE-----VRDVHPT 553 ++ FF + +I H RR+ ++G + R G VR Sbjct: 387 SISYFFN------LLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVR----- 435 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN 613 E +I N+++ N + + ++ + + + E Sbjct: 436 -----------ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 484 Query: 614 YV-----IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 + + + G V D+ + + + + +++ + Sbjct: 485 HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFG 544 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD---SGVTAVAKRGGVVQ 725 G R T + V +A D +A+ G Sbjct: 545 FIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANALLADDGSFIDDNIIARFRGENT 604 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 V +R+ + A I L SN+ M P+ + + Sbjct: 605 VVPRNRVDYMDVSPKQVVSAATACIPFLEN-DDSNRALMGANM--QRQAVPL----MQPE 657 Query: 786 GPSTDLG-ELALGQNMRVAFMP-WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 P G E G++ A + + G VV+ I ++ V Sbjct: 658 SPIVGTGMEYVSGKDSGAAVICRYPG------------VVERVEAKNIWVRRYEDVDGQQ 705 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLL 902 G + + + V + ++ IV +G EV G+IL G KGE L ++ Sbjct: 706 VKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMEKGELALGR--NVM 763 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS- 961 + +D+ + +S ++ V+T +E+ + ++ ++ +D+ Sbjct: 764 VGFMTWDGYNYEDAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPN 818 Query: 962 ---------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +E I+ G + +LV + +R L ++ ++ + Sbjct: 819 VGEDALRNLDERGIIRIGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDT 878 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 L + + K+ + GD+L PGV ++V+VY+ KR+I GDKMAGRHGN Sbjct: 879 SLRVPHGGGGIIHDVKVFNR----EDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGN 934 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KGVISKI P EDMPY +GTP+DI+LNPLGVPSRMNI G + + Sbjct: 935 KGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNI---------------GQVLELHM 979 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 G+ IA+PVFDGA+E Sbjct: 980 GMAARYL---------------------------------------GIHIASPVFDGARE 1000 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 ++ E L+ + + LYDGRTGE F+ V+VG MYM+KL H+VDDK+HARSTG YS Sbjct: 1001 EDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYS 1060 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN 1312 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G+ Sbjct: 1061 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGD 1120 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 + EPG+PESF VL+KE++SLG+++++ Sbjct: 1121 NVPEPGVPESFKVLIKELQSLGMDVKI 1147 >UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=Veillonella RepID=A3FMP8_9FIRM Length = 1124 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 491/1189 (41%), Positives = 676/1189 (56%), Gaps = 110/1189 (9%) Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 D GTF+ING ERVIVSQL RSPGV++D + + G LY + +IP RG+W++ E D Sbjct: 1 DTGTFIINGAERVIVSQLVRSPGVYYDKE---IDTMGNRLYASTVIPNRGAWIELETDAN 57 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 + + VRIDR RK+PATI++RAL + T + IL+LF+ + E + L+ E Sbjct: 58 EVVSVRIDRNRKIPATILVRALGWDTNESILELFWNGQVDEDGNPIYDERLLRTL---EK 114 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + V + K R + ++ + V + +++ G Sbjct: 115 DTTESSEEALVEIYKKLRPGEPPTVESARNLFDNLFFDPRRYDFARVGRYKVNKKLGWKQ 174 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 L+ + + + G I L A I Sbjct: 175 RMFGQLLAQPIF-----------------NPETGEVI------------LDAGTHIGEEE 205 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 + A F + D + N +L ++++D+I + Sbjct: 206 IEIVEKSGVFAGEGFAEFYIDI---DGVHAKVICNNCNL----PYEFRTVTREDMIANIS 258 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 L+++ +G G DDIDHLGNRR+R VGE+ +NQFR+GL R+ER V+ER+++ + D + PQ Sbjct: 259 YLLNLMDGVGHTDDIDHLGNRRLRCVGELLQNQFRIGLTRMERVVRERMTVQESDMITPQ 318 Query: 491 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+THKRR+SALGPGGL+RERAGFEVRDV Sbjct: 319 ALINIRPVVAAVKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLSRERAGFEVRDV 378 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG------------- 597 H +HYGR+CPIETPEGPNIGLINSLS YA+ NE+GF+E PYRKV Sbjct: 379 HHSHYGRMCPIETPEGPNIGLINSLSNYAKVNEFGFIEAPYRKVEKIYGTGDEADKIVKV 438 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VTD + Y++A EE VIAQANS LDEEG FV D + CRS + + D+VDYMDVS Sbjct: 439 RVTDTVAYMTADEEEGMVIAQANSVLDEEGCFVSDHIACRSGHDVLEVTPDKVDYMDVSP 498 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 ++VVS+G ++IPFLE+DDANRALMGANMQRQAVP LRA PLVGTGME A DSGV + Sbjct: 499 KEVVSIGTAMIPFLENDDANRALMGANMQRQAVPLLRAQAPLVGTGMEYTAATDSGVCIL 558 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 AK G V +I + +++ +D+Y + K+ RSNQ+TC NQ P V G+ V Sbjct: 559 AKAAGTVVRCWGDQIHVMRDDN------GRVDVYKMNKFLRSNQSTCFNQKPIVHRGDHV 612 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 G VLADGP+TD GELALG N+ VAFMPW GYN+ED+IL+SE + +ED +T+IHI+E Sbjct: 613 VAGQVLADGPATDGGELALGFNILVAFMPWEGYNYEDAILLSEDLCKEDIYTSIHIEEYE 672 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 C +RDTKLG EEIT ++PN G+ +L LD GI+ IGAEV GDILVGK TPKGET+LTP Sbjct: 673 CDARDTKLGAEEITRELPNTGDDSLKNLDADGIICIGAEVKPGDILVGKATPKGETELTP 732 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQA 956 EE+LLRAIFG+K +V+D+SLRVP+G SG ++DV+VFTR +G E ++ + + Q Sbjct: 733 EERLLRAIFGDKEREVRDTSLRVPHGESGKIVDVKVFTRENGDELQPGVNKLVRVYIAQK 792 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE----------------- 999 +K + G + V+ + D P L Sbjct: 793 RKIHEGDKMAGRHGNKGVVSRVMRREDMPF-LPDGTPVQIVLNPLGVPSRMNIGQVLETH 851 Query: 1000 -------LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 LG+ ++ Q++Q+ E+ + + +E + + D+L + + V V Sbjct: 852 LGFAVQGLGMKIKDTDMQIKQVLER-AKTDASYWDNIEELKGLYARLDELKAQIAQDVTV 910 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV-----LNPLGVPSRM 1107 + ++ + N I D+ E + + L R Sbjct: 911 A-----HLDVDEE---------ITQLTNDIMDLVKVETERQLSALGGYTRYRELKDIERS 956 Query: 1108 NIGQILETH-LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 ++ + +E + + ++ L + Q ++ E I A + +++R+ ++ D Sbjct: 957 HMAKQIECFDTDESVPDMDPELEKELGRLQSTVRILETIDEAREKRSEIRKSLEAIG-YD 1015 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 E + + G+ IATPVFDGA E ++ E L+L G+ LYDGRTGE + VT Sbjct: 1016 YEQYGMPKPDVAGIHIATPVFDGASEVDVFEALQLAGKSEDGKTVLYDGRTGEPMDNRVT 1075 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 VGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1076 VGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1124 >UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 Tax=Bacteria RepID=RPOB_CLOTH Length = 1250 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 465/1015 (45%), Positives = 631/1015 (62%), Gaps = 59/1015 (5%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ + +R + K +V+D+P L+ IQ +S+++F+++ G + F+ V PI Sbjct: 1 MVHPVKLGRNVRMSYSKIDEVIDMPNLIEIQKNSYEQFLKE------GFKEVFKDVNPIT 54 Query: 61 SYSGNSELQYVSYRLGEP-VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 Y+GN L++V Y L EP + V EC+ R TY+APL+VK+RL+ E ++KE Sbjct: 55 DYTGNLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLINKE-------TGEVKE 107 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 QE++MG+ PLMT+ GTF+ING ERVIVSQL RSPG+++ K +GK L++ +IP Sbjct: 108 QEIFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYAM---KIDKAGKQLFSNTVIPN 164 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF-------- 230 RG+WL++E D D L VRIDR RKLP T+++RAL Y T +I +LF E Sbjct: 165 RGAWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDS 224 Query: 231 EIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 + + +E+ GE + + ++ + R A+ R + + Sbjct: 225 TKTEEEGLLEIYKRLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSI---- 280 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G + ++ D TGE+I A +S + + +G + + D + I Sbjct: 281 AARIHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV--ILRVDGKNVKVIG 338 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 + Y P E E + E + + Sbjct: 339 NDMVDIKR----------YVDFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKALQER 388 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + + ++K+DII + +I + G G DDIDHLGNRR+RSVGE+ +NQFR+GL Sbjct: 389 IDDLIPKH---ITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQNQFRIGL 445 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 R+ER V+ER+++ DLD + PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPL+E+THKR Sbjct: 446 SRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKR 505 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ NEYGF+E Sbjct: 506 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIE 565 Query: 589 TPYRKVTD---GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 TPYRKV+ G VT+EI YL+A EE Y+IAQAN LDEEG F+ + V CR K E Sbjct: 566 TPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEPLDEEGRFISNKVVCRYKEEFIEV 625 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 ++D+MDVS +Q+VSV S+IPFLE+DDANRALMGANMQRQAVP ++ + P+VGTG+E Sbjct: 626 DPSKIDFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAVPLIKTESPIVGTGIE 685 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 A DSGV +AK GVV+ V A+ I+I+ + + D Y L KY RSNQ TCI Sbjct: 686 YRAARDSGVVILAKNPGVVEKVTANEIIIRTKDGKR-------DTYKLLKYMRSNQGTCI 738 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 NQ P V GE VE GDV+ADGPSTD GE+ALG+N+ V FM W GYN+ED+IL+SER+V++ Sbjct: 739 NQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLVGFMTWEGYNYEDAILISERLVKD 798 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 D FT+IHI+E +RDTKLGPE+IT +IPNV E AL L+ GI+ IGAEV GDILVG Sbjct: 799 DVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDILVG 858 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKR 944 KVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV++FTR +G E Sbjct: 859 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTRENGDELAPG 918 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 ++ + + Q +K + G I +L + D P D L Sbjct: 919 VNKLVRVYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPF-LPDGTPLDIVLN 972 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 273/512 (53%), Gaps = 76/512 (14%) Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEK 900 TK G + + + + +++ IV G EV GD++ G T GE L Sbjct: 715 RTKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIADGPSTDNGEIALGK--N 772 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 +L + + +D+ L +S ++ VFT +E+ + ++ + +++ Sbjct: 773 VLVGFMTWEGYNYEDAIL-----ISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREI 827 Query: 961 SE----------ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 I+ G R +LV + + +R L ++ ++ + Sbjct: 828 PNVSEDALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVR 887 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 L + E + K+ + GD+LAPGV K+V+VY+A KR+I GDKMAGRH Sbjct: 888 DTSLRVPHGESGIVVDVKIFTR----ENGDELAPGVNKLVRVYVAQKRKISVGDKMAGRH 943 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 GNKGVIS+I P+EDMP+ +GTP+DIVLNPLGVPSRMNI G + Sbjct: 944 GNKGVISRILPVEDMPFLPDGTPLDIVLNPLGVPSRMNI---------------GQVLEV 988 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 L + G +ATPVFDGA Sbjct: 989 HLGYAAKAL---------------------------------------GWKVATPVFDGA 1009 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 E +I + L+ L G+ LYDGRTGE FE VTVGYMYMLKL HLVDDK+HARSTG Sbjct: 1010 TEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHLVDDKIHARSTGP 1069 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV Sbjct: 1070 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVK 1129 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + EPG+PE F VL+KE++SL +++++ E Sbjct: 1130 GENVPEPGIPECFKVLIKELQSLCLDVKVYSE 1161 >UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=D1B5Y3_THEAS Length = 1201 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 444/1006 (44%), Positives = 625/1006 (62%), Gaps = 84/1006 (8%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSV 56 M R+ GK+ ++++P L+ +Q S++ F + D + GL+ F+ V Sbjct: 1 MAVEVPSLMAPRRYLGKQKDLIELPDLVEVQRHSYEWFFQADEDPNFRRLQGLQELFKEV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI+SY GN L++V Y + P ++E + R +T+S P+R +RLV + Sbjct: 61 FPIESYDGNFALEFVRYYVDPPTISIEEARERDLTWSRPIRATIRLVNRSN-------GE 113 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKE+EVY+G+ P+MTD GTF+INGTERV+VSQL RS GV+F +D S G+ Y A++ Sbjct: 114 IKEEEVYLGDFPVMTDRGTFIINGTERVVVSQLARSAGVYFSADLS---SPGQETYAAKL 170 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IP RG+WL+F+ P + L V+ID R+ K+ + Sbjct: 171 IPDRGAWLEFDLTPSEFLSVKIDNRK------------------------KIPVTMFLKA 206 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 L + E LR L V+ ++V E + G + Sbjct: 207 LGVPTDDELLR-----------------------------LFGATVEEVDVVEEDVRGML 237 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ + G +I N ++ + L +L + G R+ + ++ETL DPT Sbjct: 238 LAEPIVGSD-GRVIFHKNDRITKEHLDELWKQGRTRVAVWRVDH-----SVAETLEKDPT 291 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 + A++EI+R ++P EPP E A +LFF RY+L VGR K NR L + + Sbjct: 292 SSTDEAMLEIFRRLKPNEPPRMENAREHMHSLFFDSRRYNLGRVGRYKLNRRLGLQVDDE 351 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 +L+ +D++ ++ L+ +R+G DDIDHLGNRR+R++GE+ +NQ R+GL+R+ER K Sbjct: 352 QRLLTVEDVVAIVNGLLKLRDGLEREDDIDHLGNRRVRAIGELLQNQVRIGLLRMERIAK 411 Query: 477 ERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 ER++ + DL + +D+IN +PISAA++EFFGS QLSQFMDQ NPL+E+TH+RR+SALGP Sbjct: 412 ERMTTIPDLSSATAKDLINVRPISAALREFFGSGQLSQFMDQTNPLAELTHRRRLSALGP 471 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGL+RERAGFE RDVH THYGR+CPIETPEG NIGL+ SL+ YA+ NEYGFL TP R+V Sbjct: 472 GGLSRERAGFEARDVHYTHYGRICPIETPEGSNIGLVTSLATYAKINEYGFLVTPRRRVV 531 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 DG VT E+ YLSA +E Y + A++ + E+G + D V R +G+ + +DQVD++DV Sbjct: 532 DGRVTGEVVYLSADDEDEYNVGMASTPVGEDGSILIDEVHVRHRGDIRMVPKDQVDFLDV 591 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 S +Q+VSV LIPFLEHDDANRALMG+NMQRQAVP +RA+ PLVGTG+E +A DSG Sbjct: 592 SPKQIVSVSTGLIPFLEHDDANRALMGSNMQRQAVPLVRAEAPLVGTGIEAKIARDSGSC 651 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 +A+R G V++VDA R+VI+ + ++ Y L K+ RSNQ T I+Q P V G+ Sbjct: 652 ILARRSGTVEFVDADRVVIRAED-------GTLNQYRLVKFRRSNQGTVIHQRPLVRKGD 704 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 PV+ GDV+ADG + GELALG+N+ VAF+ W GYNFED+IL+S+RVV+ED +T+IHI+E Sbjct: 705 PVKAGDVIADGQACQGGELALGRNVLVAFVSWEGYNFEDAILLSQRVVKEDYYTSIHIEE 764 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 +RDTKLGPEEIT DIPNVG+ AL LDE+GIV IGAEV GDILVGKVTPKGE+ Sbjct: 765 YEVEARDTKLGPEEITRDIPNVGDDALKNLDENGIVRIGAEVRAGDILVGKVTPKGESDQ 824 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD--KRALEIEEMQL 953 +PEE+LLRAIFGEKA +V+DSSLRVP+G G V+ ++ +R+ +D E+ ++ + Sbjct: 825 SPEERLLRAIFGEKAREVRDSSLRVPHGEGGKVVAIKRLSREHNSEDLSPGVNEVVKVYV 884 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 Q +K + G + +L + D P D L Sbjct: 885 AQFRKITEGDKMAGRHGNKGVVSKILPEEDMPF-LSDGTPVDVVLN 929 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 261/490 (53%), Gaps = 81/490 (16%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V G V GD++ G+ GE L +L A + + +D+ L +S V Sbjct: 699 LVRKGDPVKAGDVIADGQACQGGELALGR--NVLVAFVSWEGYNFEDAIL-----LSQRV 751 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + +T +E+ + ++ ++ +D+ +E I+ G R + Sbjct: 752 VKEDYYTSIHIEEYEVEARDTKLGPEEITRDIPNVGDDALKNLDENGIVRIGAEVRAGDI 811 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + D+ P +R L ++ ++ + L + E K ++ Sbjct: 812 LVGKVTPKGESDQSPEERLLRAIFGEKAREVRDSSLRVPHGEGGKVVAIKRLSREH---N 868 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 +DL+PGV ++VKVY+A R+I GDKMAGRHGNKGV+SKI P EDMP+ +GTPVD+VL Sbjct: 869 SEDLSPGVNEVVKVYVAQFRKITEGDKMAGRHGNKGVVSKILPEEDMPFLSDGTPVDVVL 928 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN +G ++ Sbjct: 929 NPLGVPSRMN---------------LGQVFETVMGFVA---------------------- 951 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL------GDLPTSGQIRL 1212 + G +ATPVF+GA + EI +L+ +L +I L Sbjct: 952 -----------------MHNGWKVATPVFEGADQEEIFQLVDKIRENKYPELTRDCKITL 994 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 YDGRTGE ++ VTVG MYMLKL HLVDDK+HARSTG YSL+TQQPLGGK QFGGQRFGE Sbjct: 995 YDGRTGEPMDKKVTVGVMYMLKLIHLVDDKIHARSTGPYSLITQQPLGGKTQFGGQRFGE 1054 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 MEVWALE YGAA+ LQE+LTVKSDD+ GR K Y+ IV G + +PG+PESF VL+KE++ Sbjct: 1055 MEVWALEGYGAAHMLQEILTVKSDDIRGRLKTYERIVKGQNLAKPGVPESFRVLIKELQG 1114 Query: 1333 LGINIELEDE 1342 LG+++E+ E Sbjct: 1115 LGVDVEIVYE 1124 >UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Tax=Bacteria RepID=RPOB_CLOBB Length = 1249 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 461/1007 (45%), Positives = 635/1007 (63%), Gaps = 69/1007 (6%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ KR R FGK V ++P L+ +QLDS+Q F+ + GL F + PI Sbjct: 1 MVHPVQVGKRTRMSFGKVKDVTEMPNLIEVQLDSYQWFLRE------GLHEVFEDINPIT 54 Query: 61 SYSGNSELQYVSYRLGEP--VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +++GN L++V Y+L + V+EC+ R TY+APL+V +RL E +IK Sbjct: 55 NFTGNLVLEFVDYKLDMDNIKYSVEECKERDATYAAPLKVSVRLQNNE-------TGEIK 107 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 EQEV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+++ KT GK LY+A +IP Sbjct: 108 EQEVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDKT---GKKLYSATVIP 164 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF------- 230 RG+WL++E D D ++VRID+ RKLP TI+ RA+ + + +++LD F E F Sbjct: 165 NRGAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKD 224 Query: 231 -EIRDNKLQMELVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + +E+ GE + D I ++ + R +R R + Sbjct: 225 NTKTREEGLLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKL----A 280 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL-----D 342 IA ++ A D I+ STGE++ ++S L + +G K ++ L + L + Sbjct: 281 LNLRIANQIAAMDVINPSTGEIMVEKGQKISRLLAEDIQNAGIKSVDILVDDKLVRVISN 340 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 + I++ + D ++ ++ LV + L D Y + Sbjct: 341 NFVDITKQVPFDVSDLQIKELVH-------------------YPTLREILDNYSDETTIK 381 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 + ++L R + + KDDI + + + G G VDDIDHLGNRR+RSVGE+ +N Sbjct: 382 EEIKKNLSRLIPKH---IIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQN 438 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 QFR+GL R+ER VKER+++ D +++ PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPLS Sbjct: 439 QFRIGLSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLS 498 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSL+ +A+ N Sbjct: 499 ELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFARVN 558 Query: 583 EYGFLETPYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 EYGF+ETPYR V T+EI Y +A EE +IAQA LDE G+FV+ VT R Sbjct: 559 EYGFIETPYRIVDKENARATEEIRYFTADEEDQCLIAQAKEPLDENGYFVDKKVTVRYLE 618 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + VD MDVS +Q+VSV ++IPFLE+DDA+RALMG+NMQRQAVP L+ P+V Sbjct: 619 DVLVVPATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIV 678 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 GTG+E AVDSGV A+ GVV +V A+ I +K + + G D Y L K+ RSN Sbjct: 679 GTGIEFKAAVDSGVLPKARNAGVVTFVSANEIRVKRD------SDGGTDNYRLLKFKRSN 732 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q++CINQ P V+ GE V + VLADGPSTDLGE+ALG+N+R+ F+ W GYN+ED++L+SE Sbjct: 733 QSSCINQRPIVNKGEIVFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISE 792 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +V+ED FT++HI+E C +RDTKLGPEEIT DIPNV E AL +D+ GI+ IGAEV G Sbjct: 793 ELVREDVFTSMHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSG 852 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGV 939 DILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++D++VFTR +G Sbjct: 853 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTRENGD 912 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 E + E+ + Q +K + G I +L + Sbjct: 913 ELNPGVNELVRCYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPF 959 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 289/1181 (24%), Positives = 465/1181 (39%), Gaps = 184/1181 (15%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 EI++ ++ M P L E +F I +V V + R + K + Sbjct: 100 NNETGEIKEQEVFMGDFP--LMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDKTGKKL 157 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 I + +Y +S + + L + G + L + Sbjct: 158 Y-SATVIPNRGAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQEL-LDFFGEDE 215 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 ++ D T R L+EIY+ +RPGEPPT ++A SL ++LFF RYDLS VGR KF Sbjct: 216 RFRASIEKDNTKTREEGLLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKF 275 Query: 406 NRSLLREEIEGSGILSKDDII------DVMKKLIDIRNGKGEVDDIDHLGNRRIR-SVGE 458 N+ L + ++ D+I +++K + + +DI + G + + V + Sbjct: 276 NKKLALNLRIANQ-IAAMDVINPSTGEIMVEK--GQKISRLLAEDIQNAGIKSVDILVDD 332 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTL----MPQDMINAKPISAAVKEFFGSSQLSQF 514 V + + V +S + L +++++ +KE LS+ Sbjct: 333 KLVRVISNNFVDITKQVPFDVSDLQIKELVHYPTLREILDNYSDETTIKEEIKK-NLSRL 391 Query: 515 MDQ--------------------NNPLSEITHK--RRISALG-------PGGLTRERAGF 545 + + + +I H RR+ ++G GL+R Sbjct: 392 IPKHIIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVV 451 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 + R I S++ N ++ + Sbjct: 452 KERM------------------TIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQ 493 Query: 606 LSAIEEGNYV-----IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + + E + + + + G V D+ + + + + +++ Sbjct: 494 TNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSL-- 551 Query: 661 VSVGASLIPFLEHDDANRAL--MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 + A + + + R + A + ++ + ++G Sbjct: 552 -ATFARVNEYGFIETPYRIVDKENARATEEIRYFTADEEDQCLIAQAKEPLDENGYFVDK 610 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN--LTKYTRSN--------QNTCINQM 768 K V+Y++ +V + D M I + + ++ N + Sbjct: 611 KV--TVRYLEDVLVVPATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAV 668 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNM-RVAFMPWNGYNFEDSILVSERVVQEDR 827 P + P+ G + + D G L +N V F+ N Sbjct: 669 PLLKPQAPIV-GTGIEFKAAVDSGVLPKARNAGVVTFVSAN------------------- 708 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GK 886 + G + + S +++ IV G V +L G Sbjct: 709 ---------EIRVKRDSDGGTDNYRLLKFKRSNQSSCINQRPIVNKGEIVFKNQVLADGP 759 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-----GVEK 941 T GE L ++ + + +D+ L V V + Sbjct: 760 STDLGEIALGKNIRMG--FITWEGYNYEDAMLISEELVREDVFTSMHIEEYECEARDTKL 817 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 + + + + ++ I+ G R +LV + + +R L Sbjct: 818 GPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAI 877 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 ++ ++ + L + E + K+ + GD+L PGV ++V+ Y+ KR+I Sbjct: 878 FGEKAREVRDTSLRVPHGEAGIIVDIKVFTR----ENGDELNPGVNELVRCYIVQKRKIS 933 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGVIS+I P EDMP+ +G P+ I LNPLGVPSRMNI Sbjct: 934 VGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNPLGVPSRMNI------------ 981 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G + L + G Sbjct: 982 ---GQVLEVHLGWAAS---------------------------------------KLGWH 999 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 I+TPVFDGA E EI+E L+ +G+ LYDGRTGE F+ VTVG MY+LKL HLVDD Sbjct: 1000 ISTPVFDGATENEIEECLEKAGYNANGKTVLYDGRTGEPFDNLVTVGIMYILKLAHLVDD 1059 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA+TLQE+LTVKSDDV GR Sbjct: 1060 KIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGR 1119 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K Y+ IV G + EPG+PESF VL+KE+++L +++++ +E Sbjct: 1120 VKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNE 1160 >UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira RepID=C0QWX6_BRAHW Length = 1173 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 454/1006 (45%), Positives = 626/1006 (62%), Gaps = 75/1006 (7%) Query: 5 YTEKKRI---RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVF 57 + +K R+ R +F + V++ P LL+IQ +S++ F+++D GL+ S+F Sbjct: 19 FAKKYRMENGRVNFSRTASVIEPPDLLAIQKESYESFLQKDVPENKRKNEGLQEVLTSIF 78 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 PI + + +++++SY +GEP +E + R TY+ P ++K++L + + E I Sbjct: 79 PIVASNEKMQIEFISYSIGEPKITEKEARRRDKTYAYPFKIKVQLTVRDPE-------RI 131 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 EQE+++G+IP MTD GTF++NG ERVIVSQ+HRSPGV F+ S ++ A+II Sbjct: 132 IEQEIFVGDIPAMTDRGTFIVNGAERVIVSQIHRSPGVVFNR------SDRDAMFVAKII 185 Query: 178 PYRGSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDN 235 P RG+WL+FE D KD ++VRIDR++KLP T+ LRA+ T E+IL LF+ + I Sbjct: 186 PDRGTWLEFELDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFY--EVDNISLE 243 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 KL E E L G + + Sbjct: 244 KLSDENSKEALIGRRSYSTV---------------------------------------- 263 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 Y E+ E+I ++ +L +L SG K I L + I TL D Sbjct: 264 -----YDTENPDEIILNPGELINPNLAERLLMSGIKEISVLNMEAIKDNVTIINTLDKDT 318 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T ++ A +IY ++RPGEP E +L F Y L VGR K N+ L E E Sbjct: 319 TKNQEEACTKIYNVIRPGEPALIENVVRTCNDLVFDPKSYALGDVGRYKLNKRLNFPESE 378 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 +L DII+ ++ LI + + ++DDIDHLGNRR+RSVGE+ Q + G R+ER Sbjct: 379 QDKVLRHKDIIETIRFLIKVFINEEQLDDIDHLGNRRVRSVGELLSIQIKAGFTRMERIA 438 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 KER+ + D++ + PQ +++ K I A +KEFFG++QLSQFMDQNNPLSEITHKRR++ALG Sbjct: 439 KERMQMQDMEAVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQNNPLSEITHKRRLNALGQ 498 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGLTR+RAGFEVRDVH THYG++CPIETPEGPNIGLI SL+ YA+ N++GFLETPYRKV Sbjct: 499 GGLTRDRAGFEVRDVHHTHYGKICPIETPEGPNIGLIVSLATYAKINKHGFLETPYRKVV 558 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 DG VTDEI YL+A +E Y IA AN+ L+E+G F ++L++ R + E S DQV YMDV Sbjct: 559 DGKVTDEIEYLTAHDEEKYHIADANAPLNEDGTFKDNLISTRFRSEFPYSSPDQVQYMDV 618 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME-RAVAVDSGV 714 S QQ+VS+ +SLIPFLEHDDANRALMG+NMQRQ+VP L + P+VGTG+E + +G+ Sbjct: 619 SPQQIVSLSSSLIPFLEHDDANRALMGSNMQRQSVPLLYPEAPIVGTGVEAKICQPGTGI 678 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 AKR G V V + IVIK + + +D+Y L KY R+NQ+T +Q P V++G Sbjct: 679 AVHAKRAGKVIKVVHNEIVIKPTK---QNSDDDLDVYELVKYQRTNQDTNYHQRPVVNVG 735 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V+ G +LADGP+TD GELALG+N+ AFM + GYNFED+IL+S R+VQED FT+IHI+ Sbjct: 736 DVVKAGGLLADGPATDHGELALGRNVLAAFMIFEGYNFEDAILLSRRLVQEDVFTSIHIE 795 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 E + +R+TKL E IT DIPNV +AA LDE GIV IGA+V GDILVGKVTPKGET+ Sbjct: 796 EFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKAGDILVGKVTPKGETE 855 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQL 953 +TPE +LL +IFGEKA DVKD+SLRVP+G GTVIDV+V++R +G E E+ ++ L Sbjct: 856 ITPEYRLLHSIFGEKARDVKDTSLRVPHGKDGTVIDVRVYSRENGDELKPGVEEVVKVFL 915 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + + G + ++ + + D P D L Sbjct: 916 AKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLE-DGTPVDICLN 960 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 194/479 (40%), Positives = 262/479 (54%), Gaps = 66/479 (13%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V +G V G +L G T GE L +L A + + +D+ L V V Sbjct: 731 VVNVGDVVKAGGLLADGPATDHGELALGR--NVLAAFMIFEGYNFEDAILLSRRLVQEDV 788 Query: 929 ---IDVQVFTRDG--VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 I ++ F+ + + DK + + + A +E I+ G + +LV Sbjct: 789 FTSIHIEEFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKAGDILVGKV 848 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + P R L ++ + + L + + + ++ ++ GD+L Sbjct: 849 TPKGETEITPEYRLLHSIFGEKARDVKDTSLRVPHGKDGTVIDVRVYSR----ENGDELK 904 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV ++VKV+LA KR IQ GDKMAGRHGNKGV+++I PIEDMP+ E+GTPVDI LNPLGV Sbjct: 905 PGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLEDGTPVDICLNPLGV 964 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNI G I +L Sbjct: 965 PSRMNI---------------GQVIEMLLGW----------------------------- 980 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + G+ A PVF+G KE ++E + +G++RLYDGRTGE F+ Sbjct: 981 ----------SGHKMGLKYACPVFEGPKEEALREAFVASGMNPNGKVRLYDGRTGEPFKN 1030 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V VGYMYMLKLNHLV+DK+HARSTG YSLVTQQPLGGK+QFGGQR GEMEVWALEAYGA Sbjct: 1031 DVAVGYMYMLKLNHLVEDKVHARSTGPYSLVTQQPLGGKSQFGGQRLGEMEVWALEAYGA 1090 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 A LQE LTVKSDD+ GR ++Y++IV G+ PG+PESFNVL++E+R LG+NI + DE Sbjct: 1091 ANMLQEFLTVKSDDMTGRARIYESIVKGDVISSPGIPESFNVLVQELRGLGLNITIHDE 1149 >UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP8_TREPR Length = 1290 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 428/1333 (32%), Positives = 652/1333 (48%), Gaps = 87/1333 (6%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP 78 P LL +Q +F + + YGL+ S+FP+ S+ G + ++ V Y +G+P Sbjct: 20 PYPDLLGVQRSAFNRLTQHSTHPSARNPYGLQRLLFSMFPMMSHDGAALIELVKYTIGKP 79 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYE-REAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 EC G+TYSAPL + L++ V+ + +VY+G++P+MT G+F+ Sbjct: 80 CSTDAECLRSGLTYSAPLSLTLKITSRTPSNDGTWHVRYSRSHQVYLGDMPMMTRKGSFI 139 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 + GTER ++ +R+ G+ F + + + RI+P+RG+WL+ + R Sbjct: 140 VRGTERTLLVLQNRAYGLGFVPYLTYSMYDTPTVCSLRIVPHRGTWLELSI-QDGAVLFR 198 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 + +PATI+L+ +T+ I + + I + + + + FD Sbjct: 199 FNAGVFMPATILLKGFGASTDAIAGMLTPRAGIAISPGGASIAIDLSDIAFDVQHFDT-- 256 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI--DESTGELICAANM 315 R AR R+L K L P+ VV K + D S G + Sbjct: 257 ---------RLGHARLTRRLAKSRGSLEGRPLHIEDADVVNKFELASDASLGGRTVGSGT 307 Query: 316 ELSLDLLAKLSQSGHKRIETLFT-NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 LS +++ + + + + YI+ TLR+D T D A I + Sbjct: 308 LLSQRVISMARADRESYLAVVNRCHHGAYLRYIARTLRMDRTVDPHDARACIAGHIGIMR 367 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +A SLF+ + + Y L+ GR + N + R +G L DI +K LI+ Sbjct: 368 HLDPASAHSLFQGIMENARAYCLTPCGRSQLNARIGRHFSQGGDTLDARDIALSLKLLIN 427 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 DD+D + NR+ R + + R + ++R ++ + ++ Sbjct: 428 ATRRNVRPDDVDDMSNRKARDACDALCDALRPAFLGLKRRLRSH-TANSRPGEAIAILLG 486 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 ++ + +S+L+Q +DQ NPL+E+THKRR++ + RA RDVH TH Sbjct: 487 LHAVTHQAYDELTNSRLAQPLDQTNPLAEVTHKRRVAIIAGSDSGPRRAPLGARDVHATH 546 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CP+ETPEG NIGLI SL+ A+ + G + PY Y+S EE Sbjct: 547 YGRLCPVETPEGQNIGLIASLAARARIDAQGTILAPYVVTRRNATRAAARYISPQEE--- 603 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 + ++ H + R ++ +V +D + + +S + IPFLEH+ Sbjct: 604 -VGAMSAPSAIVPHSRRRTIMARIGHGVAMVHPSEVILVDGANEMALSAATATIPFLEHN 662 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALMG+NMQRQAVP KP V TGME+AVA + V A+ G V YVD I I Sbjct: 663 DACRALMGSNMQRQAVPCCYPRKPRVHTGMEQAVAQHAMVAIRARYAGRVAYVDPLHIAI 722 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + + Y L + R+NQ T + P V G V+ GDV+ADGP+++ G L Sbjct: 723 VP----ICENQGHACTYRLARNVRTNQGTQADHRPTVIPGSYVQAGDVIADGPASEGGVL 778 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 ALG+++ VAFMPW GYN+EDS+ VSE +++ +T++H+ E++ ++ + Sbjct: 779 ALGRDVLVAFMPWEGYNYEDSVAVSEALLRNGAYTSVHLDEVSVDMDGDDGCGTVLSRCV 838 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 P + ++ +LDE GIV +G+ V GDI+VG+++P+ LLR + Sbjct: 839 PGITQSQRDRLDERGIVRVGSMVYPGDIIVGRISPRHAGIAPKGNSLLRTALATSEQANR 898 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 DSS+R G++GTV+ IE DL + E L R Sbjct: 899 DSSIRATQGMTGTVVYS---------------RIEPCNQPDVHDDLPGQCA-GEQSLLRR 942 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLEL-GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 I G A RD + + +EQ A Sbjct: 943 I-----QHGARATYCWASARDPYFWMPRNGLAAAPYAMEQHASPKA-------------- 983 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 G + +KV +A + +QPGDK++GRHGNKGV+SK+ PIEDMPY +NG Sbjct: 984 -----GLHPYDKATRTLKVAIASRIDLQPGDKVSGRHGNKGVVSKVVPIEDMPYMKNGRS 1038 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VD+++NPLGVPSRMN+GQ+LETH+G+A+ + + + A+ +D Sbjct: 1039 VDVIVNPLGVPSRMNVGQLLETHIGLASIAL--------EARSNTAEHLLCSSAYHDAMC 1090 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK---------LGDL 1204 D + + R + P FDG EAEI+ + + L Sbjct: 1091 HGLMACDGRCYPACSAAGGSPGHRVTLCTLCPAFDGPSEAEIRSMARAAATQGVRFKHGL 1150 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 Q LYDGRTG Q++RPVTVG+MY LKLNHL +K+H+RSTG YSLVT+QPLGGKA+ Sbjct: 1151 HRRHQAILYDGRTGTQYDRPVTVGFMYYLKLNHLARNKVHSRSTGPYSLVTEQPLGGKAR 1210 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 GGQR GEMEVWALEA+GAA+TLQEMLT+KSDDV GR +++ +I + G PES Sbjct: 1211 SGGQRVGEMEVWALEAHGAAFTLQEMLTIKSDDVGGRRRVHDHIAQDVRPLSYGTPESIG 1270 Query: 1325 VLLKEIRSLGINI 1337 +L++E+RSL +++ Sbjct: 1271 LLVRELRSLCVDV 1283 >UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY37_9BACL Length = 1267 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 438/1028 (42%), Positives = 621/1028 (60%), Gaps = 74/1028 (7%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R R+ + + +V+D+P L+ IQ S+ KF+E GL+ F+ V PI+ Sbjct: 1 MQKVKFGKHRQRRSYARISEVIDLPDLIEIQTLSYDKFLE------TGLKDVFKDVSPIE 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 + L+++ Y+LG P +DV E + R TYSAPLRV++RL+ ER+ +IKEQ Sbjct: 55 GNNDKLSLEFIDYKLGTPKYDVDESKERDATYSAPLRVRVRLINKERD-------EIKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MGE+PLMT+ GTF+ING ERVIVSQL RSP V+F D + Y +IP R Sbjct: 108 EVFMGELPLMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVKNIPNAYKTTVIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF--------E 231 G+WL+FE D K ++ RIDR RK+P T ++RAL + + E I+ LF E Sbjct: 168 GAWLEFEKDIKGLVYARIDRTRKIPLTTLIRALGFESDESIIKLFGEDTELLNTLEKDEN 227 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPV 289 + + + GE A+ + + + R A+ R + + + Sbjct: 228 LDTGTALKVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVGRYKLNNKLHV----G 283 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 E + +++ + +D TGE++ +L+ +++ + + + + + Sbjct: 284 ERLENQILVEPIVDTETGEILVEKGTKLTREIIDGIYEELGTTANVVEFDMNE------- 336 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 +D ++ L +I ++ G + D L +G N+ + Sbjct: 337 --SLDGSDSLKLQLFKIVNQVKVGNDYDID----------ELTDDQVLHVIGNGAPNKDV 384 Query: 410 LREEIEGSGILSKDDIIDVMKK---LIDIRNGK--------GEVDDIDHLGNRRIRSVGE 458 L L+ DI+ + LI R G VDDIDHLGNRR+R +GE Sbjct: 385 L--------TLTIADIVASINYYLLLIRTRRNNDGFEFELIGRVDDIDHLGNRRLRCIGE 436 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQ RVG+ R+ER V+ER+S+ D + + PQ +IN +P++A +KEFFGSSQLSQFMDQ Sbjct: 437 LLQNQIRVGISRMERVVRERMSIQDTNEITPQQLINVRPVTAIIKEFFGSSQLSQFMDQV 496 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS + Sbjct: 497 NPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSF 556 Query: 579 AQTNEYGFLETPYRKVTDG-----VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 A+ NE+GF+ TPYRKV VT+ + YL+A +E YV+AQ+ +N+DE+G+FV++ Sbjct: 557 ARINEFGFIMTPYRKVEFDGEGRPYVTENVQYLTADQEDKYVVAQSTANVDEKGYFVDEE 616 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 V CR +G++++ R+ +++MDVS +QVVS + IPFLE+DD+NRALMGANMQRQAVP + Sbjct: 617 VVCRFRGDNTVKPREMMNFMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLM 676 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG-EAGIDIYN 752 + P VGTGME A DSG +AK G+V+YVD ++I ++ E + +D Y Sbjct: 677 ITEAPFVGTGMEHLAARDSGAAVIAKYPGIVEYVDGAKIKVRRIETLEGKEIKGDLDTYV 736 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 + K+ RSN +T NQ P V +G+ VE D+LADGPS D GELALG+N+ VAF+ W+GYN+ Sbjct: 737 IHKFVRSNHSTAYNQKPIVKVGDRVEPKDILADGPSMDKGELALGKNLVVAFVNWDGYNY 796 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 ED++++SER+V++D +T+IH++E +RDTKLGPEEIT +IPNVGE AL LD GI+ Sbjct: 797 EDAVIMSERLVKDDVYTSIHVEEYETDARDTKLGPEEITREIPNVGENALRNLDARGIIR 856 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 IGAEV GDILVGKVTPKG T+ TPEEKLL AIFG K+ +V+D+SLRVP+G G V DV+ Sbjct: 857 IGAEVKDGDILVGKVTPKGLTEQTPEEKLLYAIFGAKSKEVRDTSLRVPHGADGVVADVK 916 Query: 933 VFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 +F R DG E E+ + + Q +K + G I +L + D Sbjct: 917 IFKREDGAELPNGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPY-LPDG 975 Query: 992 LPRDRWLE 999 P D L Sbjct: 976 TPVDVMLN 983 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 296/1190 (24%), Positives = 468/1190 (39%), Gaps = 184/1190 (15%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K EI++ ++ M +P L ET +F I +V V + R + + + +K VK Sbjct: 96 LINKERDEIKEQEVFMGELP--LMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVK 153 Query: 284 LIEVP--VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 I I + ++ + G + + + L + G + E++ Sbjct: 154 NIPNAYKTTVIPNRGAWLEFEKDIKGLVYARIDRTRKIPLTTLIRALGFESDESII-KLF 212 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 + TL D D +AL IY +RPGEP E A++ FF RYDL+ VG Sbjct: 213 GEDTELLNTLEKDENLDTGTALKVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVG 272 Query: 402 RMKFNRSLLREEIEGSGILSK-------------------DDIIDVMKKLIDIRNGKGEV 442 R K N L E + IL + +IID + + + E Sbjct: 273 RYKLNNKLHVGERLENQILVEPIVDTETGEILVEKGTKLTREIIDGIYEELGTTANVVEF 332 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK-------ERLSLGDLDTLMPQDMINA 495 D N + + ++ L ++ VK + L+ + ++ N Sbjct: 333 D-----MNESLDGSDSL-----KLQLFKIVNQVKVGNDYDIDELTDDQVLHVIGNGAPNK 382 Query: 496 KPISAAVKEFFGSSQLSQFMDQN------------NPLSEITHK--RRISALGPGGLTRE 541 ++ + + S + + + +I H RR+ +G + Sbjct: 383 DVLTLTIADIVASINYYLLLIRTRRNNDGFEFELIGRVDDIDHLGNRRLRCIGELLQNQI 442 Query: 542 RAGFE-----VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 R G VR+ R+ +T E LIN V A E+ + Sbjct: 443 RVGISRMERVVRE-------RMSIQDTNEITPQQLINVRPVTAIIKEF------FGSSQL 489 Query: 597 GVVTDEIHYLSAIEEGNYV--IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 D+++ LS + + + + G V D+ + + + + Sbjct: 490 SQFMDQVNPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGL 549 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 +++ S A + F R + R P + + + E V Sbjct: 550 INSL---SSFARINEFGFIMTPYRKVEFDGEGR---PYVTENVQYLTADQEDKYVVAQST 603 Query: 715 TAVAKRGGVVQ------YVDASRIVIKVNEDEMYPG-----EAGIDIYNLTKYTRSNQNT 763 V ++G V + + + + + M A + SN+ Sbjct: 604 ANVDEKGYFVDEEVVCRFRGDNTVKPREMMNFMDVSPKQVVSAATACIPFLENDDSNRAL 663 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 M ++ + A T + LA + + G +V Sbjct: 664 MGANMQRQAVPLMITE----APFVGTGMEHLAARDSGAAVIAKYPG------------IV 707 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + I ++ + + G + V + ++ IV +G V DIL Sbjct: 708 EYVDGAKIKVRRIETLEGKEIKGDLDTYVIHKFVRSNHSTAYNQKPIVKVGDRVEPKDIL 767 Query: 884 V-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 G KGE L L+ A + +D+ + +S ++ V+T VE+ Sbjct: 768 ADGPSMDKGELALGK--NLVVAFVNWDGYNYEDAVI-----MSERLVKDDVYTSIHVEEY 820 Query: 943 ----------KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + E + + + I+ G + +LV ++ Sbjct: 821 ETDARDTKLGPEEITREIPNVGENALRNLDARGIIRIGAEVKDGDILVGKVTPKGLTEQT 880 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 P ++ L + K+ + L + + K+ K G +L GV ++V+V Sbjct: 881 PEEKLLYAIFGAKSKEVRDTSLRVPHGADGVVADVKIF----KREDGAELPNGVNELVRV 936 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 ++ KR+I+ GDKMAGRHGNKGVIS I P EDMPY +GTPVD++LNPLGVPSRMNI Sbjct: 937 FIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPYLPDGTPVDVMLNPLGVPSRMNI--- 993 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 G + L + Sbjct: 994 ------------GQVLELHLGMAAKQL--------------------------------- 1008 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 G+ +ATPVFDGA + ++ + + + LYDGRTGE F+ V+VG MYM Sbjct: 1009 ------GIHVATPVFDGATDEDVWSTVAEAGMAKDAKTVLYDGRTGEPFDSRVSVGVMYM 1062 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +KL H+VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LT Sbjct: 1063 IKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILT 1122 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 KSDD NGR K Y+ IV G + PG+PESF VL+KE+++LG++ + D Sbjct: 1123 YKSDDTNGRVKTYEAIVKGENIPRPGVPESFRVLMKELQALGMDFRVMDN 1172 >UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Tax=Bacteria RepID=RPOB_LEUCK Length = 1204 Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats. Identities = 441/1011 (43%), Positives = 599/1011 (59%), Gaps = 85/1011 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R R+ + +VLDVP L+ IQ S+Q F+++ G++ F + PI + G Sbjct: 10 KHRTRRSYASIKEVLDVPNLIEIQTASYQWFLDE------GIKEMFGDIMPIDDFQGTLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+YV Y+L EP +++ E + YSAPL V LRL +E +IK Q+V+ GE Sbjct: 64 LEYVDYQLMEPKYNIDEAREHDANYSAPLHVTLRLTNHE-------TGEIKSQDVFFGEF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT+ GTF+ING ERVIVSQL RSPG++++ + K +G+ Y +IP RG+WL++E Sbjct: 117 PLMTEQGTFIINGAERVIVSQLVRSPGIYYNQENDK---NGRPRYGTTVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFE--------------KVIFEI 232 D K VRIDR RKL T ++RAL + + I+D+F + K + + Sbjct: 174 TDAKGIANVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQYDALNMTLEKDVHKDMSDS 233 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPVE 290 R + ++ GE + D V + + R A R + L Sbjct: 234 RVEEALKDVYERLRPGEPKTADSSRALLVARFFDPKRYDLASVGRYKINKKLSL----KT 289 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + + +A+ D +GE+I + +++KLS E Sbjct: 290 RLLNQTLAETLADPDSGEVIAEKGTLVDKTVMSKLSPFLD-----------------RED 332 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + A++E EP T + + E+ E L G Sbjct: 333 FKTTTYTPSGDAVLE--------EPVTLQKIK--IESPENPEKTLLLIGNG--------- 373 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E + DI+ M ++++ G G VDDIDHLGNRRIRSVGE+ +NQFR+GL R Sbjct: 374 -HIDENDRTVRPADILAGMNYFLNLQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLTR 432 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 +ER V+ER+S+ D +T+ PQ +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+ HKRR+ Sbjct: 433 MERVVRERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGEMNHKRRL 492 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTR+RAG EVRDVH THYGR+ PIETPEGPNIGLINSL+ Y + N+YGF+ETP Sbjct: 493 SALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSLATYGRINKYGFIETP 552 Query: 591 YRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 YR+V +VTD+I YL+A EE NY++AQANS L+++G FV D V R E+ D Sbjct: 553 YRRVDWTTHMVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVHDTVMARFGEENIETPID 612 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 ++DYMDVS +QVVSVG + IPFLE+DD+NRALMGANMQRQAVP L PLVGTG+E Sbjct: 613 RIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAVPLLDPHAPLVGTGIEYKA 672 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 A DSGV +++ GVV+YVD +I ++ + ++ D Y L K+ RSN NQ Sbjct: 673 AHDSGVAMISRAAGVVEYVDGRQIRVRREDGQL-------DTYELMKFRRSNGGKNYNQK 725 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P V GE VE +VLADGPS + GELALGQN +AFM W GYNFED+I+++ER+V+ED + Sbjct: 726 PIVHEGEHVEADEVLADGPSMEKGELALGQNPLIAFMTWQGYNFEDAIVLNERLVREDVY 785 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+IHI+E +RDTKLGPEE+T +IPN GE L LD GI+ +GAEV GDILVGKVT Sbjct: 786 TSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQLKDLDADGIIRVGAEVHDGDILVGKVT 845 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALE 947 PKG T+L+ EE+LL AIFGEKA +V+D+SLRVP+G G V +V+++T +G E Sbjct: 846 PKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGVVQNVRIYTPENGDELAPGVNM 905 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + + + Q +K + G + V+ + D P D L Sbjct: 906 MVRVYIAQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPY-MPDGTPIDILL 955 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 268/1165 (23%), Positives = 445/1165 (38%), Gaps = 163/1165 (13%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 EI+ + P L E +F I +V V + R + Q + Sbjct: 98 LTNHETGEIKSQDVFFGEFP--LMTEQGTFIINGAERVIVSQLVRSPGIYYNQENDKNG- 154 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 I + +Y ++ G + L + + G + D Sbjct: 155 RPRYGTTVIPNRGAWLEYETDAKGIANVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQ 214 Query: 344 GPYISETLRVD-----PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 ++ TL D + AL ++Y +RPGEP T +++ +L FF RYDL+ Sbjct: 215 YDALNMTLEKDVHKDMSDSRVEEALKDVYERLRPGEPKTADSSRALLVARFFDPKRYDLA 274 Query: 399 AVGRM----KFNRSLLREEIEGSGILSKDDIIDVMKKL-----IDIRNGKGEVDDIDHLG 449 +VGR K + + L+ D +V+ + + + D + Sbjct: 275 SVGRYKINKKLSLKTRLLNQTLAETLADPDSGEVIAEKGTLVDKTVMSKLSPFLDREDFK 334 Query: 450 NRRIRSVGEMAEN----QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 G+ ++ + E K L +G+ + I A + F Sbjct: 335 TTTYTPSGDAVLEEPVTLQKIKIESPENPEKTLLLIGNGHIDENDRTVRPADILAGMNYF 394 Query: 506 FGSSQLSQFMDQNNPLSEITHK--RRISALGP--GGLTRERAGFEVRDVHPTHYGRVCPI 561 + + +I H RRI ++G R R V Sbjct: 395 LN------LQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLTRMERVVR---------- 438 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----I 616 E +I N+++ N + ++ + + + E N+ + Sbjct: 439 ---ERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGEMNHKRRLSAL 495 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF-LEHDD 675 D G V D+ + + + + +++ + + + Sbjct: 496 GPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSL---ATYGRINKYGFIETP 552 Query: 676 ANRALMGANM--QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 R +M + T + + + D + + I Sbjct: 553 YRRVDWTTHMVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVHDTVMARFGEENIETPID 612 Query: 734 IKVNEDEMYPGEAGIDI--YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 D + + SN+ M ++ L D + + Sbjct: 613 RIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAV--------PLLDPHAPLV 664 Query: 792 G---ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 G E + VA ++S + +++ D +L Sbjct: 665 GTGIEYKAAHDSGVA-------------MISRAA---GVVEYVDGRQIRVRREDGQLDTY 708 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFG 907 E+ + G ++ IV+ G V ++L G KGE L + L A Sbjct: 709 ELMKFRRSNGGKNYNQKP---IVHEGEHVEADEVLADGPSMEKGELAL--GQNPLIAFMT 763 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS------ 961 + + +D+ + ++ ++ V+T +E+ ++ ++ +++ Sbjct: 764 WQGYNFEDAIV-----LNERLVREDVYTSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQ 818 Query: 962 ----EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 + I+ G +LV + +R L ++ ++ + L Sbjct: 819 LKDLDADGIIRVGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVP 878 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + + GD+LAPGV +V+VY+A KR+IQ GDKMAGRHGNKG +S Sbjct: 879 HGGGG----VVQNVRIYTPENGDELAPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVS 934 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 + P EDMPY +GTP+DI+L+P+GVPSRMNI G + L + Sbjct: 935 VVVPEEDMPYMPDGTPIDILLSPMGVPSRMNI---------------GQVLELHLGFAAK 979 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 + G+ +A+PVFDGA + EI+ Sbjct: 980 ---------------------------------------KLGIHVASPVFDGASDDEIEA 1000 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L+ LP G+ +YDGRTGE F++ V VG M+ +KL H+VDDK+HARS G YSLVTQQ Sbjct: 1001 ALREAGLPQDGKSVVYDGRTGEAFDKRVGVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQ 1060 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LT KSDDV GR K+Y++I+ G P Sbjct: 1061 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVAGRVKVYESIIKGEPIPRP 1120 Query: 1318 GMPESFNVLLKEIRSLGINIELEDE 1342 G+PESF VL+KE+++LG+++++ D Sbjct: 1121 GVPESFRVLVKELQALGLDMQVLDN 1145 >UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax=Borrelia RepID=RPOB_BORHD Length = 1155 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 457/1051 (43%), Positives = 650/1051 (61%), Gaps = 68/1051 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD------PEGQYGLEAAFRSVFPIQSY 62 KR+ GK ++LD+P L+ IQL+S++KF++ + P GLE+ FR VFP++S Sbjct: 3 KRVHLGQGKAEEILDLPNLIEIQLNSYEKFLQLERLKTNRPLLNEGLESVFRDVFPMKSS 62 Query: 63 SGNSELQYVSYRLGE--PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G L+Y Y + F +EC+ +G +Y A L+++L L T +I+++ Sbjct: 63 NGEVALEYEKYYIEYNSLSFTEKECKRKGQSYEAVLKIRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMTD GTF++NG ERVIVSQ+HRSPGV F + K LY ARIIPYR Sbjct: 116 DVYMGTIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKE--------KDLYYARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL T + I++ F++ E+ ++ Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVNEDT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + G+ + +I + G +IT + I ++ VK I++ +++ V Sbjct: 226 ----KREITGQYLATNIIIKENMTYRAGDKITLQDIEDFLQNGVKEIDL-IDFDGYDSVP 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + S L C + L + G K + Sbjct: 281 GKHFISSDVILNCFEKEDAYFSL-----KDGFKEL------------------------S 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R S ++ +Y ++ PGEP + + AES N+FFSE RYDL VGR K ++ +++ S Sbjct: 312 RESVMLAVYSVLLPGEPISIDNAESDLRNVFFSEKRYDLGHVGRYKLSKKFGLDDLTTS- 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DI++ + L+ I +G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ YA+ N+YGFLETPYRKV DG Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLETPYRKVVDGK 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VTDEI YLSAI+E IAQAN+ ++ EG++++DL++ R G+ + +DYMDVS + Sbjct: 551 VTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVSGDYTTMIPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGMER VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERIVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G+V + +IVI+ + +D Y L KY R+NQ+T N V G+ V Sbjct: 671 KRSGIVVLATSKKIVIRPEDAADDHD---LDEYELAKYERTNQDTSFNHSVLVKEGQVVN 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +G+++ADGP+T GE+ALG N+ V F+PWNG+N+ED+IL+SER+++ED +T+IHI+E + Sbjct: 728 KGEIIADGPATRYGEVALGNNLLVGFIPWNGFNYEDAILISERIIKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++TADIPNV L+KLDE+GIV IG V GDIL+GKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTADIPNVSGKILNKLDENGIVRIGTYVKPGDILIGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQLKQAK 957 KLL +IFGEKA DVK++SL+VP+G GTVIDVQ T+D V EI ++ + + + Sbjct: 848 FKLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDVSNLPPGVDEILKVYIAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K + G + +L + D P D L L + N + + Q Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMPY-LADGTPLDICLN-PLGVPSRMNIGQLMESQ 965 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + + + + + + K Sbjct: 966 LGLAGKYLGEYYDVPVFESATNECIQEKLKK 996 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 260/1167 (22%), Positives = 427/1167 (36%), Gaps = 195/1167 (16%) Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 EIR + M +P L + +F + +V V + R + + I Sbjct: 111 EIRQKDVYMGTIP--LMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKDLYYARI----- 163 Query: 291 YIAGKVVAKDY-IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 I + ++ ID L + + + + L G E + Sbjct: 164 -IPYRGSWLEFEIDSKKDYLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVN 222 Query: 350 TLRVDPTNDRLSALVEIYRM---MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + A I + R G+ T + E +N D D + Sbjct: 223 EDTKREITGQYLATNIIIKENMTYRAGDKITLQDIEDFLQNGVKEIDLIDFDGYDSVPGK 282 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN---- 462 + + I K+D +K + + + L + GE Sbjct: 283 HFISSDVILNCF--EKEDAYFSLKDGFKELSRESVM-----LAVYSVLLPGEPISIDNAE 335 Query: 463 ------QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 F + + +LS + ++ I + + D Sbjct: 336 SDLRNVFFSEKRYDLGHVGRYKLSKKFGLDDLTTSVLTMTDIVNTISHLL------RIYD 389 Query: 517 QNNPLSEITHK--RRISALGP-------GGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 ++ L +I H RR+ ++G G ++R + R + Sbjct: 390 GHDVLDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDRMSNKE-------------- 435 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----IAQANSN 622 + +L + + ++ + ++ + E + + + Sbjct: 436 ----VFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGLS 491 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 D G V D+ + + + + + + + A + + + R ++ Sbjct: 492 RDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSL---ATYAKVNDYGFLETPYRKVVD 548 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 + + D+ A G V + I ++ ++ Sbjct: 549 GKVTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVSGDYTTMIPKNIDYMDVS 608 Query: 743 PGEAGIDIYNLTKYTRSN--------QNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 P + L + N N +P + P+ Sbjct: 609 PRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGT-------------- 654 Query: 795 ALGQNMRVAFMPWNGYNFEDS--ILVSERVVQEDRFTTIHIQE------LACVSRDTKLG 846 G VA +DS ++ ++R T+ I + +L Sbjct: 655 --GMERIVA---------KDSGVVVKAKRSGIVVLATSKKIVIRPEDAADDHDLDEYELA 703 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAI 905 E T + + +V G V G+I+ G T GE L LL Sbjct: 704 KYERTNQDTSFNHSV--------LVKEGQVVNKGEIIADGPATRYGEVAL--GNNLLVGF 753 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS---- 961 + +D+ L +S +I ++T +++ + ++ ++ D+ Sbjct: 754 IPWNGFNYEDAIL-----ISERIIKEDLYTSIHIKEFSIEVRETKLGPEKVTADIPNVSG 808 Query: 962 ------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 +E I+ G + + +L+ + D P + L ++ K + L Sbjct: 809 KILNKLDENGIVRIGTYVKPGDILIGKVTPKSEGDITPEFKLLTSIFGEKAKDVKNNSLK 868 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 + + + K +L PGV +I+KVY+A KR+++ GDKMAGRHGNKGV Sbjct: 869 VPHGTEGTVIDVQRITK----DDVSNLPPGVDEILKVYIAKKRKLKEGDKMAGRHGNKGV 924 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 ++KI P+EDMPY +GTP+DI LNPLGVPSRMNI G + + L Sbjct: 925 VAKILPVEDMPYLADGTPLDICLNPLGVPSRMNI---------------GQLMESQLGLA 969 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + G PVF+ A I Sbjct: 970 GKYL---------------------------------------GEYYDVPVFESATNECI 990 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 +E LK + + LYDG TGE FE V VG +YMLKL+HLVDDKMHARSTG YSLV+ Sbjct: 991 QEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGIIYMLKLHHLVDDKMHARSTGPYSLVS 1050 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM 1315 QQPLGGKAQFGGQR GEMEVWALEAYGAA+TLQE+LTVKSDD++GR K+Y+NIV G Sbjct: 1051 QQPLGGKAQFGGQRLGEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIYENIVKGIPTN 1110 Query: 1316 EPGMPESFNVLLKEIRSLGINIELEDE 1342 G+PESFNVL++E+R LG ++ + D+ Sbjct: 1111 VSGIPESFNVLMQELRGLGFDLSIYDD 1137 >UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Tax=Spirochaetaceae RepID=RPOB_BORAP Length = 1155 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 454/1051 (43%), Positives = 651/1051 (61%), Gaps = 68/1051 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE------QDPEGQYGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ + P GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKNKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L T +I+++ Sbjct: 63 NGDVALEYERYYIENDTLNFTEKECKRKGQSYEAVLKVRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMT+ GTF+ING ERVIVSQ+HRSPGV F + K LY+ARIIPYR Sbjct: 116 DVYMGTIPLMTERGTFIINGAERVIVSQIHRSPGVVFYKE--------KDLYSARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL + T + I++ F+ ++ + Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVEEGT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 L G+ + I +Y G +IT + + ++ V IE+ V++ V+ Sbjct: 226 ----KRDLPGQYLAKSINIRENMYYRAGDKITLQDVEDFLQNGVNEIEL-VDFDGYNDVS 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 Y S L C L + + G K + Sbjct: 281 GKYFVSSNVILNC-----LEKEDAFFALKDGSKELP------------------------ 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + S ++ +Y + PGEP + + AE+ + +FFSE RYDL VGR K ++ ++ + Sbjct: 312 KESVMLAVYGALFPGEPISIDNAENDLKTIFFSERRYDLGRVGRYKLSKKFGSDD-LSTS 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DDI++ + L+ I G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ Y++ N+YGFLETPYRKV +G Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLETPYRKVVNGE 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT+E+ YLSAI+E IAQAN+ + +G ++EDLV+ R G+ + + +DYMDVS + Sbjct: 551 VTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGME VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGTGMESVVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G V +++IV+K E E +D Y++ KY R+NQ+TC NQ V G+ VE Sbjct: 671 KRSGEVILATSNKIVVKPFESENVKD---LDEYHIVKYERTNQDTCFNQSVLVKEGQKVE 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 RG+++ADGP+T GELALG N+ + +PWNG+N+ED+IL+S+R+V+ED +T+IHI+E + Sbjct: 728 RGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++T DIPNV E L+KLDE+GI+ IG V GDILVGKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQLKQAK 957 +LL +IFGEKA DVK++SL+VP+G GTVIDVQ T++ V EI ++ + + + Sbjct: 848 FRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNLSPGVEEILKVYVAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K + G + +L + D P D L L + N + + Q Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMPY-LADGTPLDICLN-PLGVPSRMNIGQLMESQ 965 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + + + + + K Sbjct: 966 LGLAGKYLSESYNVPVFESATNEQIQEKLKK 996 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 258/1165 (22%), Positives = 440/1165 (37%), Gaps = 191/1165 (16%) Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 EIR + M +P L E +F I +V V + R + + Sbjct: 111 EIRQKDVYMGTIP--LMTERGTFIINGAERVIVSQIHRSPGVVFYKEKD------LYSAR 162 Query: 291 YIAGKVVAKDY-IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 I + ++ ID L + + + + L G E + + E Sbjct: 163 IIPYRGSWLEFEIDSKKDYLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVE 222 Query: 350 TLRVDPTNDRLSALVEIYRM---MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + A R R G+ T + E +N + D G + Sbjct: 223 EGTKRDLPGQYLAKSINIRENMYYRAGDKITLQDVEDFLQNGVNEIELVDFD--GYNDVS 280 Query: 407 RSLLREEIEGSGILSKDDIIDVMK---------KLIDIRNG---KGEVDDIDHLGNRRIR 454 L K+D +K ++ G GE ID+ N Sbjct: 281 GKYFVSSNVILNCLEKEDAFFALKDGSKELPKESVMLAVYGALFPGEPISIDNAEN---- 336 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 ++ F + R + +LS + ++ I + + Sbjct: 337 ---DLKTIFFSERRYDLGRVGRYKLSKKFGSDDLSTSVLTMDDIVNTISHLL------RI 387 Query: 515 MDQNNPLSEITHK--RRISALGP-------GGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 + ++ L +I H RR+ ++G G ++R + R + Sbjct: 388 YEGHDILDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDRMSNKE------------ 435 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----IAQAN 620 + +L + + ++ + ++ + E + + Sbjct: 436 ------VFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGG 489 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 + D G V D+ + + + + + + S + + + R + Sbjct: 490 LSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYS---RVNDYGFLETPYRKV 546 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 + + + D+ A G + + ++ + Sbjct: 547 VNGEVTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPKNIDYMD 606 Query: 741 MYPGEAGIDIYNLTKYTRSN--------QNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + P + L + N N +P + P+ Sbjct: 607 VSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGT------------ 654 Query: 793 ELALGQNMRVAFMPWNGYNFEDS--ILVSERVVQEDRFTT--IHIQELACVSRDTKLGPE 848 G VA +DS ++ ++R + T+ I ++ + Sbjct: 655 ----GMESVVA---------KDSGVVVKAKRSGEVILATSNKIVVKPFESENVKDLDEYH 701 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFG 907 + + N + +V G +V G+I+ G T GE L LL + Sbjct: 702 IVKYERTNQDTCFNQSV----LVKEGQKVERGEIIADGPATRYGELALG--NNLLLGVIP 755 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS------ 961 + +D+ L ++ ++T +++ + ++ ++ D+ Sbjct: 756 WNGFNYEDAILISD-----RIVKEDLYTSIHIKEFSIEVRETKLGPEKVTGDIPNVSEKI 810 Query: 962 ----EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 +E I+ G + + +LV + D P R L ++ K + L Sbjct: 811 LNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPEFRLLTSIFGEKAKDVKNNSLKVP 870 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + + + K +L+PGV +I+KVY+A KR+++ GDKMAGRHGNKGV++ Sbjct: 871 HGTEGTVIDVQRITK----EDVGNLSPGVEEILKVYVAKKRKLKEGDKMAGRHGNKGVVA 926 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 KI P+EDMPY +GTP+DI LNPLGVPSRMNIGQ++E+ LG+A K + + N + + Sbjct: 927 KILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLSESYNVPVFESAT 986 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 +++E +++A F+ + + + Sbjct: 987 NEQIQEKLKKAG-------------------------------------FNPTSKEILYD 1009 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 G TGE FE V VG +YMLKL+HLVDDKMHARSTG YSLV+QQ Sbjct: 1010 -----------------GYTGEPFENEVMVGVIYMLKLHHLVDDKMHARSTGPYSLVSQQ 1052 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGKAQFGGQR GEMEVWALEAYGAA+TLQE+LTVKSDD++GR K+Y+NIV G Sbjct: 1053 PLGGKAQFGGQRLGEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIYENIVKGVPTNVS 1112 Query: 1318 GMPESFNVLLKEIRSLGINIELEDE 1342 G+PESFNVL++E+R LG+++ + D+ Sbjct: 1113 GIPESFNVLMQELRGLGLDLSIYDD 1137 >UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB9_THET1 Length = 1203 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 439/1066 (41%), Positives = 603/1066 (56%), Gaps = 166/1066 (15%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 K RK + + P +++P L+ IQLDSF F E+ GL+ F + P+ ++G Sbjct: 17 PASKVQRKSYARIPDTIEMPNLIQIQLDSFNWFKEE------GLQELFDEINPVVDFTGR 70 Query: 66 -SELQYVSY----RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 EL++ GEP + +EC+ R TYSAPL+VK L++ E +IKEQ Sbjct: 71 LMELRFDKPDSGQFFGEPRYTEKECRERDFTYSAPLKVKATLLVKE-------TGEIKEQ 123 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 E+++G+ PLMT+ GTFVING ERV+VSQL RSPGV+F +SGK L+ A++IP R Sbjct: 124 EIFLGDFPLMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFD--EASGKTLWTAKLIPNR 181 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 G+WL+FE KD L+V++DR+RK+P T++LRA+ ++++ + ++ Sbjct: 182 GAWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMGPTTPGTDEWLWA 241 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 L + + +G+ + + A R K+ + + + ++ D Sbjct: 242 LYGK----------VSRDGRY-----QNLAATIERDPTKNSQEALV----ELYRRLRPGD 282 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + + L DP Sbjct: 283 PPNPEN-------------------------------------ARTLLRQLLFDP-RRYD 304 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 A V Y++ R E A S + +D R+ E + Sbjct: 305 LARVGRYKLTRKWEQLREVVARS-------NGPTFDFEIDSRV---------YGERLRTI 348 Query: 421 SKDDIIDVMKKLIDIRN----GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 + D+I+++ LI + N + E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +K Sbjct: 349 TGRDLINIVGNLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIK 408 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+S+ D ++ P ++IN +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPG Sbjct: 409 ERMSIQDAESATPNNLINIRPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPG 468 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL+R+RAG +VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV Sbjct: 469 GLSRDRAGLDVRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVK 528 Query: 597 GV-----------------------------------------------------VTDEI 603 V V +E+ Sbjct: 529 SVPGDSIDAMVGHITREPIMDSNGQEVVPVGTEITREVAEKIVALGLDEIKVKPRVLNEV 588 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR-----SKG--ESSLFSRDQVDYMDVS 656 YLSA E + +AQANS LDE G+F+ED V R +G E + D+VDY+D S Sbjct: 589 EYLSADREDLFTVAQANSPLDERGYFLEDRVEARASIRLRRGGTEFMIVPVDEVDYVDAS 648 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 +QVVSV +SLIPFLEHDDANRALMGANMQRQAVP L D P+VGTG+E VA DSG Sbjct: 649 PKQVVSVASSLIPFLEHDDANRALMGANMQRQAVPLLVPDSPVVGTGVEAQVARDSGQVV 708 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +AK G+V+ V A RIV++ ++ + Y L K+ R+NQ+T +NQ P V+ G+ Sbjct: 709 IAKADGIVRSVTAERIVVEEDDGNL-------RTYELEKFVRTNQDTLLNQRPIVNKGDR 761 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 + G ++AD ST GE+ALGQN+ VAFMPW G NFED++L+SER+V++D +T+IHI++ Sbjct: 762 IYAGQIIADSASTSNGEIALGQNVLVAFMPWEGGNFEDAVLISERLVRDDVYTSIHIEKY 821 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +RDTKLGPEEIT DIPNVGE AL+ LDE GIVY+GAEV DILVGKVTPKGET++T Sbjct: 822 EVEARDTKLGPEEITRDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMT 881 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQ 955 EE+LLRAIF EKA DV+D+SLRVPNGV G VIDV+VFTR + + ++ + + Q Sbjct: 882 AEERLLRAIFSEKARDVRDTSLRVPNGVHGQVIDVKVFTRVENDDLPAGVNQMVRVMIAQ 941 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 +K + G I +L + D P D L Sbjct: 942 KRKISEGDKVAGRHGNKGVISRILPIEDMPF-LPDGRPVDVILNPI 986 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 378/1175 (32%), Positives = 559/1175 (47%), Gaps = 169/1175 (14%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K EI++ ++ + P L E +F I +V V + R + + + + Sbjct: 112 LLVKETGEIKEQEIFLGDFP--LMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFDEASG 169 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL------- 336 + I + ++ + L + + + + L E + Sbjct: 170 KTLWTAKLIPNRGAWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMG 229 Query: 337 ---------------FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 + ++ T+ DPT + ALVE+YR +RPG+PP E A Sbjct: 230 PTTPGTDEWLWALYGKVSRDGRYQNLAATIERDPTKNSQEALVELYRRLRPGDPPNPENA 289 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSL--------------------LREEIEGSGILS 421 +L L F RYDL+ VGR K R R E ++ Sbjct: 290 RTLLRQLLFDPRRYDLARVGRYKLTRKWEQLREVVARSNGPTFDFEIDSRVYGERLRTIT 349 Query: 422 KDDIIDVMKKLIDIRN----GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 D+I+++ LI + N + E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +KE Sbjct: 350 GRDLINIVGNLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIKE 409 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+S+ D ++ P ++IN +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPGG Sbjct: 410 RMSIQDAESATPNNLINIRPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPGG 469 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L+R+RAG +VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV Sbjct: 470 LSRDRAGLDVRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVKS 529 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 V D I + ++ + G E + +++ + + Sbjct: 530 VPGDSIDAMVGHITREPIMDSNGQEVVPVGT------------EITREVAEKIVALGLDE 577 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +V + + +L D +A+ PL G V++ + Sbjct: 578 IKVKPRVLNEVEYLSADR-----------EDLFTVAQANSPLDERGYFLEDRVEARASIR 626 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 +RGG + V V+ + ++ +N+ M ++ V Sbjct: 627 LRRGGTEFMIVPVDEVDYVDASPKQVVSVASSLIPFLEHDDANRALMGANMQRQAVPLLV 686 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 D P G +VA +++++ + ++ + + Sbjct: 687 ------PDSPVVG-----TGVEAQVARDSGQ-------VVIAKA---DGIVRSVTAERIV 725 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 D L E+ V + L++ IV G + G I+ ++ Sbjct: 726 VEEDDGNLRTYELEKF---VRTNQDTLLNQRPIVNKGDRIYAGQIIAD-SASTSNGEIAL 781 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 + +L A + + +D+ L +S ++ V+T +EK + ++ ++ Sbjct: 782 GQNVLVAFMPWEGGNFEDAVL-----ISERLVRDDVYTSIHIEKYEVEARDTKLGPEEIT 836 Query: 958 KDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 +D+ +E I+ G + +LV + + +R L +++ + Sbjct: 837 RDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMTAEERLLRAIFSEKAR 896 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + L + K+ + DDL GV ++V+V +A KR+I GDK+A Sbjct: 897 DVRDTSLRVPNGVHGQVIDVKVFTRVE----NDDLPAGVNQMVRVMIAQKRKISEGDKVA 952 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 GRHGNKGVIS+I PIEDMP+ +G PVD++LNP+GVPSRMN+GQIL Sbjct: 953 GRHGNKGVISRILPIEDMPFLPDGRPVDVILNPIGVPSRMNLGQIL-------------- 998 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 L G +A PVF Sbjct: 999 -ECHLGWAASTL---------------------------------------GFKVACPVF 1018 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 DGA E IKE L+ LP G+I LYDGRTGE+F++PV VG MY++KL HLV+DK+HARS Sbjct: 1019 DGASEEMIKEELRRAGLPEDGKIELYDGRTGEKFDQPVAVGVMYIMKLAHLVEDKIHARS 1078 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 TG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD GR + Y+ Sbjct: 1079 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDTVGRVRTYEA 1138 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 IV G G+PESF VL+KE++SLG+++E+ +E Sbjct: 1139 IVKGEPISGAGVPESFKVLMKELQSLGLSVEVLNE 1173 >UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3X7_DESAS Length = 1227 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 422/1013 (41%), Positives = 588/1013 (58%), Gaps = 128/1013 (12%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MVY+ R R +FGK +VLD+P L+ +Q +S++ F++ GL F + PIQ Sbjct: 4 MVYAEKLGTRERLNFGKFKEVLDLPNLIEVQRNSYKWFLK------NGLREVFHDISPIQ 57 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 58 DFTGNLVLEFLDYTLGEPKYFVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+F + SGK L++A IIP R Sbjct: 111 EVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFAE---QIDPSGKKLFSATIIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI-------- 232 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y+++ ++ F + Sbjct: 168 GAWLEFETDVNDHVFVRIDRTRKIPATVLIRALGYSSDAMVMEEFGEDKNIQETLSRDNT 227 Query: 233 -RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +E+ GE + + ++ + R A R ++ Sbjct: 228 GSEEDALVEIYKRLRPGEPPTVESARTLLETLFFDPKRYDLANVGRYKLHKKLQ------ 281 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 V Y +E +G + E L +I E Sbjct: 282 -----HGVLYRYPEEQSG---------------------KIEYDEILKQELPVEREFIRE 315 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D + L + + +P R Y + + L Sbjct: 316 LTPKDILDTIKYLLRLVQGITEEKDPLGR-------------NIEYTVDDI------DHL 356 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + G L ++ + ++ + + + D+D Sbjct: 357 GNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVD----------------------- 393 Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 + PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR Sbjct: 394 ----------------VITPQVLINIRPVVASIKEFFGSSQLSQFMDQTNPLAELTHKRR 437 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ N++GF+ET Sbjct: 438 LSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINQFGFIET 497 Query: 590 PYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 PYR+V +VT+EI YL+A E +IAQAN+ L++EG F E V R E Sbjct: 498 PYRRVDKEKRIVTNEIEYLTADVEDRNIIAQANAPLNKEGFFTEQAVNARHGHEILKVPG 557 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 +++D+MDVS +QV S+ +LIPFLEHDDANRALMGANMQRQAVP ++A P+VGTG+E Sbjct: 558 EKIDFMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLVKAQAPVVGTGVEYK 617 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 A DSGV +A++ G+V+ V A+ I+I+ ++ D + L K+TRSNQ TCINQ Sbjct: 618 AARDSGVVPLARKSGIVEKVTANDIMIRSDD-------GTSDYHKLLKFTRSNQGTCINQ 670 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V+ G+ V+ GD++ADGP+TD GELALG+N+ VAFMPW+GYN+ED+IL+SE+ V+ED Sbjct: 671 RPIVTKGQRVDEGDIIADGPATDNGELALGRNILVAFMPWDGYNYEDAILISEKAVKEDF 730 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI+E C +RDTKLGPEEIT DIPNVGE L LD+ GI+ +GAEV GDI+VGKV Sbjct: 731 FTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGKV 790 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRAL 946 TPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++DV+VF+RD G E Sbjct: 791 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSRDNGDELPPGVN 850 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + + Q +K + G + ++ + D P + L Sbjct: 851 HLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPF-LPDGTPIEIVLN 902 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 297/1148 (25%), Positives = 467/1148 (40%), Gaps = 184/1148 (16%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K E+++ ++ M P L E +F I +V V + R + + K Sbjct: 99 LINKETGEVKEQEVFMGDFP--LMTEKGTFIINGAERVIVSQLVRSPGVYFAEQIDPSGK 156 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + G+ + + + Sbjct: 157 KL-FSATIIPNRGAWLEFETDVNDHVFVRIDRTRKIPATVLIRALGYSS-DAMVMEEFGE 214 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 I ETL D T ALVEIY+ +RPGEPPT E+A +L E LFF RYDL+ VGR Sbjct: 215 DKNIQETLSRDNTGSEEDALVEIYKRLRPGEPPTVESARTLLETLFFDPKRYDLANVGRY 274 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K + G+L + + ++GK E D+I + + E Sbjct: 275 KL------HKKLQHGVL---------YRYPEEQSGKIEYDEI---LKQELPVEREFIREL 316 Query: 464 ----FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 + + R V+ D + ++ + +L Q + Sbjct: 317 TPKDILDTIKYLLRLVQGITEEKDPLGRNIEYTVD-DIDHLGNRRLRSVGELLQNQFRIG 375 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 ++ R+ VR E I ++ ++ Sbjct: 376 ----LSRMERV----------------VR----------------ERMTIQDVDVITPQV 399 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----IAQANSNLDEEGHFVEDLV 634 N + + ++ + + + E + + + + G V D+ Sbjct: 400 LINIRPVVASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVH 459 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQ----QVVSVGASLIPFLEHDDANRALMG-----ANM 685 + + + + + + ++ G P+ D R + Sbjct: 460 HSHYGRMCPIETPEGPNIGLIGSLSTYARINQFGFIETPYRRVDKEKRIVTNEIEYLTAD 519 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 +A+ PL G A+ G + V +I ++ Sbjct: 520 VEDRNIIAQANAPLNKEGFFTE------QAVNARHGHEILKVPGEKIDF-MDVSPKQVFS 572 Query: 746 AGIDIYNLTKYTRSNQ-----NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 + ++ +N+ N +P V PV V + D G + L + Sbjct: 573 IATALIPFLEHDDANRALMGANMQRQAVPLVKAQAPVVGTGVEYK-AARDSGVVPLAR-- 629 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 +V++ I I+ S KL + N G Sbjct: 630 ------------------KSGIVEKVTANDIMIRSDDGTSDYHKL----LKFTRSNQGTC 667 Query: 861 ALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 +++ IV G V GDI+ G T GE L +L A + +D+ L Sbjct: 668 ----INQRPIVTKGQRVDEGDIIADGPATDNGELALGR--NILVAFMPWDGYNYEDAILI 721 Query: 920 VPNGVSG---TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE--ELQILEAGLFSR 974 V T I ++ + D + EI ++ L + + I+ G R Sbjct: 722 SEKAVKEDFFTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVR 781 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 1034 ++V + + +R L ++ ++ + L + E + K+ ++ Sbjct: 782 PGDIMVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSR-- 839 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 GD+L PGV +V+VY+A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTP+ Sbjct: 840 --DNGDELPPGVNHLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPFLPDGTPI 897 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 +IVLNPLGVPSRMNIGQ+ + L Sbjct: 898 EIVLNPLGVPSRMNIGQV---------------LETHLGWAAR----------------- 925 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 + G ++TPVF+GA E++I E L+ DLP + + L+D Sbjct: 926 ----------------------KLGCYVSTPVFNGATESDILEFLRKADLPDTAKTTLHD 963 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 GRTGE F+ P+TVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEME Sbjct: 964 GRTGEPFDNPITVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1023 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 VWALEAYG+AYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG Sbjct: 1024 VWALEAYGSAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLG 1083 Query: 1335 INIELEDE 1342 +++++ E Sbjct: 1084 LDVKVLSE 1091 >UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Tax=cellular organisms RepID=RPOB_SYNJB Length = 1139 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 372/807 (46%), Positives = 498/807 (61%), Gaps = 16/807 (1%) Query: 197 RIDRRRKLPATIILRALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 +I+R R P R Y + + K EI+D + + +P L + +F I Sbjct: 68 KINRPRYDPEEAKRRDATYQAQIRVPTRLINKETGEIKDMDVFIGELP--LMTDRGTFII 125 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +V V + R + + + + I + + + G + + Sbjct: 126 NGAERVIVNQIVRSPGVYYKSELDKNGRRTY-SASLIPNRGAWLKFETDKNGLVWVRIDK 184 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 L L G E ++L H + +T+ + AL+E+YR +RPGEP Sbjct: 185 TRKLSAAVLLKALGLSDSEIY--DNLRHPEFFQKTMEKEGPYTEEEALMELYRKLRPGEP 242 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 PT + L E+ FF RYDL VGR K N+ L E +L+ DI+ V+ LI++ Sbjct: 243 PTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAESVRVLTVTDILAVIDYLINL 302 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G VDDIDHLGNRR+RSVGE+ +NQ RVGL R+ER ++ER+++ + + L P ++N Sbjct: 303 EYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESENLTPASLVNP 362 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGF VRD+HP+HY Sbjct: 363 KPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFAVRDIHPSHY 422 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGN 613 GR+CPIETPEGPN GLI SL+ +A+ N+YGF+E+PY +V +GVV ++ YL+A EE Sbjct: 423 GRICPIETPEGPNAGLIGSLATHARVNQYGFIESPYYRVENGVVRKDLGMVYLTADEEDE 482 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 Y +A + +D EG DLV R + E + +V Y+ V+ QV+SV SLIPFLEH Sbjct: 483 YRVAPGDVPVDAEGRITADLVPVRYRQEFTTAHPTEVHYVQVAPVQVISVATSLIPFLEH 542 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 DDANRALMGANMQRQAVP L+ D+P VGTG+E A DSG+ V++ GVV YV A IV Sbjct: 543 DDANRALMGANMQRQAVPLLKPDRPYVGTGLEAQAARDSGMVVVSRTNGVVTYVSADEIV 602 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 ++ ++ +Y L KY RSNQ+TC+NQ P V G+ V G VLADGP+T+ GE Sbjct: 603 VRPDDG------GDPIVYRLQKYQRSNQDTCLNQRPLVYTGDRVVAGQVLADGPATEGGE 656 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD 853 LALGQN+ VA+MPW GYN+ED+IL+SER+V +D FT++HI++ +R TKLGPEEIT + Sbjct: 657 LALGQNVLVAYMPWEGYNYEDAILISERLVYDDVFTSVHIEKHEIEARQTKLGPEEITRE 716 Query: 854 IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 IPNVGE AL LDE+GIV IGA V GDILVGKVTPKGE+ PEE+LLRAIFGEKA DV Sbjct: 717 IPNVGEDALRDLDENGIVRIGAWVEAGDILVGKVTPKGESDQPPEERLLRAIFGEKARDV 776 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF 972 +D+SLRVPNG G V+DV++FTR+ G E A + + + +K + G Sbjct: 777 RDNSLRVPNGERGRVVDVRIFTREQGDELPPGANMVVRVYIALKRKIQVGDKIAGRHGNK 836 Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLE 999 I +L + D P D L Sbjct: 837 GIISRILPIEDMPY-LADGTPVDVVLN 862 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 196/530 (36%), Positives = 280/530 (52%), Gaps = 59/530 (11%) Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 VV ++ V R G + + L++ +VY G V G Sbjct: 585 VVSRTNGVVTYVSADEIVVRPDDGGDPIVYRLQKYQRSNQDTCLNQRPLVYTGDRVVAGQ 644 Query: 882 ILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 +L G T GE L + +L A + + +D+ L +S ++ VFT +E Sbjct: 645 VLADGPATEGGELAL--GQNVLVAYMPWEGYNYEDAIL-----ISERLVYDDVFTSVHIE 697 Query: 941 KDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLD 990 K + ++ ++ +++ +E I+ G + +LV + D Sbjct: 698 KHEIEARQTKLGPEEITREIPNVGEDALRDLDENGIVRIGAWVEAGDILVGKVTPKGESD 757 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 + P +R L ++ + + L E + ++ + QGD+L PG +V Sbjct: 758 QPPEERLLRAIFGEKARDVRDNSLRVPNGERGRVVDVRIFTR----EQGDELPPGANMVV 813 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 +VY+A+KR+IQ GDK+AGRHGNKG+IS+I PIEDMPY +GTPVD+VLNPLGVPSRMN+G Sbjct: 814 RVYIALKRKIQVGDKIAGRHGNKGIISRILPIEDMPYLADGTPVDVVLNPLGVPSRMNVG 873 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 Q+ E LG AA+ +G + M D ++ S + E + Sbjct: 874 QVYECLLGWAAEHLGVRFKLMPF--------------------DEMHGLEASRLTVEAKL 913 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 R A+E K+ + + G+I+++DGRTGE F++PVTVG Sbjct: 914 R-----------------EAREKTGKDWIFNPEGKYCGKIQVFDGRTGEPFDQPVTVGRA 956 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQRFGEMEVWALEA+GAAY LQE+ Sbjct: 957 YMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYILQEL 1016 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LTVKSDD+ GR + IV G PG PESF VL++E++SL +++ + Sbjct: 1017 LTVKSDDMVGRNEALNAIVKGKPIPRPGTPESFKVLVRELQSLCLDVSVH 1066 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 159/360 (44%), Gaps = 40/360 (11%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY----------VS 72 P L+ IQ +SF F+ + G E S PI Y+G EL + Sbjct: 13 TFPDLVEIQRESFLWFLRE------GFEEELLSFSPIIDYTGKLELHFLPEYRPGDPSKG 66 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y++ P +D +E + R TY A +RV RL+ E +IK+ +V++GE+PLMTD Sbjct: 67 YKINRPRYDPEEAKRRDATYQAQIRVPTRLINKE-------TGEIKDMDVFIGELPLMTD 119 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 GTF+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D Sbjct: 120 RGTFIINGAERVIVNQIVRSPGVYYKSELDK---NGRRTYSASLIPNRGAWLKFETDKNG 176 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPE 244 ++VRID+ RKL A ++L+AL + +I D F+ + + MEL + Sbjct: 177 LVWVRIDKTRKLSAAVLLKALGLSDSEIYDNLRHPEFFQKTMEKEGPYTEEEALMELYRK 236 Query: 245 RLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 GE + + + R R R + L +V+ I Sbjct: 237 LRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAESV----RVLTVTDI 292 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 LI +D + L + + L N + G E + + S Sbjct: 293 LAVIDYLINLEYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESE 352 >UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 Tax=cellular organisms RepID=RPOB_ANASP Length = 1131 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 362/791 (45%), Positives = 491/791 (62%), Gaps = 21/791 (2%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K +I++ ++ + +P L + +F I +V V + R + + + + Sbjct: 101 LLNKETGDIKEQEVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKSEIDKNGR 158 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 I + + + + + L L G E + L H Sbjct: 159 RTY-SASLIPNRGAWLKFETDRNDLVWVRIDKTRKLSAQVLLKALGLSDNEIF--DALRH 215 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 Y +T+ + AL+E+YR +RPGEPPT + L ++ FF RYDL VGR Sbjct: 216 PEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQQLLDSRFFDPKRYDLGRVGRY 275 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K N+ L + +L+ DI+ + LI++ G +DDIDHLGNRR+RSVGE+ +NQ Sbjct: 276 KLNKKLRLSVPDTVRVLTSGDILAAVDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQ 335 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 RVGL R+ER ++ER+++ D + L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E Sbjct: 336 VRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAE 395 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 +THKRR+SALGPGGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+ +A+ N+ Sbjct: 396 LTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNQ 455 Query: 584 YGFLETPYRKVTDGVV--TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 YGFLETP+R V +G V Y++A EE + +A + +DE G+ + V R + E Sbjct: 456 YGFLETPFRPVENGRVRFDQPAAYMTADEEDDLRVAPGDIPVDENGYIIGPQVPVRYRQE 515 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 S + +QVDY+ VS Q+VSV S+IPFLEHDDANRALMG+NMQRQAVP L+ ++PLVG Sbjct: 516 FSTTTPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQRQAVPLLKPERPLVG 575 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK------------VNEDEMYPGEAGID 749 TG+E A DSG+ V++ G V YVDA+ I ++ + ++ + Sbjct: 576 TGLEAQGARDSGMVIVSRTDGDVVYVDATEIRVRVSGQLPTASGKSTDNGQLTSQKGQEI 635 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y ++KY RSNQ+TC+NQ P V +GE V G VLADG ST+ GELALGQN+ VA+MPW G Sbjct: 636 RYTVSKYQRSNQDTCLNQKPLVRIGERVVAGQVLADGSSTEGGELALGQNIVVAYMPWEG 695 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN+ED+IL+SER+VQ+D +T+IHI++ +R TKLGPEEIT +IPNVGE AL +LDE G Sbjct: 696 YNYEDAILISERLVQDDIYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQLDEQG 755 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 I+ IGA V GDILVGKVTPKGE+ PEEKLLRAIFGEKA DV+D+SLRVPNG G V+ Sbjct: 756 IIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVV 815 Query: 930 DVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 DV++FTR+ G E A + + + Q +K + G I +L + Sbjct: 816 DVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPIEDMPY-L 874 Query: 989 LDKLPRDRWLE 999 D P D L Sbjct: 875 PDGSPVDIVLN 885 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 196/437 (44%), Gaps = 37/437 (8%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRL 75 +P L+ IQ SF+ F+E+ GL S PI Y+G EL ++ +Y+L Sbjct: 21 IEPAFLLPDLIEIQRSSFRWFLEE------GLIEELNSFSPITDYTGKLELHFLGHNYKL 74 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 EP + V+E + R TY+ + V RL+ E DIKEQEV++G++PLMTD GT Sbjct: 75 KEPKYSVEEAKRRDSTYAVQMYVPTRLLNKE-------TGDIKEQEVFIGDLPLMTDRGT 127 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D D ++ Sbjct: 128 FIINGAERVIVNQIVRSPGVYYKSEIDK---NGRRTYSASLIPNRGAWLKFETDRNDLVW 184 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERLR 247 VRID+ RKL A ++L+AL + +I D F+ + + MEL + Sbjct: 185 VRIDKTRKLSAQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRP 244 Query: 248 GETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 GE + + + R R R ++L +V+ I + Sbjct: 245 GEPPTVLGGQQLLDSRFFDPKRYDLGRVGRYKLNKKLRLSVPDTV----RVLTSGDILAA 300 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 LI S+D + L + + L N + G E + + + ++ Sbjct: 301 VDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDAEVLT 360 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 ++ P P A + F + S+ + + + R L G G L+++ Sbjct: 361 PASLVNPK--PLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLS---ALGPGGLTRERA 415 Query: 426 IDVMKKLIDIRNGKGEV 442 ++ + G+ Sbjct: 416 GFAVRDIHPSHYGRICP 432 >UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNB1_9SYNE Length = 1150 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 365/869 (42%), Positives = 512/869 (58%), Gaps = 21/869 (2%) Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEIRDN 235 I L+ F KD R+ + + R Y+ + + K +I++ Sbjct: 63 ITDYTGKLELHFLGKDY---RLKAPKYMVDEAKRRDSTYSVQMYVPTRLINKETGDIKEQ 119 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ++ + +P L + +F I +V V + R + + + I + Sbjct: 120 EVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKAETDKHGRRTY-TANLIPNR 176 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + + + + L L G E + L H Y +T+ + Sbjct: 177 GAWLKFETDKNDLVWVRIDKTRKLSAQVLLKALGLSDGEIF--DSLRHPEYFQKTIEKEG 234 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 AL+E+YR +RPGEPPT + L E+ FF RYDL VGR K NR L E Sbjct: 235 QFSEEEALLELYRKLRPGEPPTVNGGQQLLESRFFDPKRYDLGKVGRHKLNRKLRLNIPE 294 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + +L+ DI+ + LI++ G DDIDHLGNRR+RSVGE+ +NQ RVGL R+ER + Sbjct: 295 STRVLTPQDIVSAIDYLINLEFDIGNPDDIDHLGNRRVRSVGELLQNQVRVGLNRLERII 354 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 +ER+++ D D+L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRRISALGP Sbjct: 355 RERMTVSDADSLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGP 414 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGLTRERAGF VRD+HP+H+GR+CPIETPEGPN GLI SL+ +A+ N++GF+ETP+ V Sbjct: 415 GGLTRERAGFAVRDIHPSHHGRICPIETPEGPNAGLIGSLATHARVNDFGFIETPFFPVV 474 Query: 596 DGVVTDEI--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 +G + + Y++A EE + +A + +D + + + + V R + + ++ S +VDY+ Sbjct: 475 NGQIVKDKPAVYMTADEEDDLRVAPGDVPIDSDNNILGESVPVRYRQDFTVTSPKEVDYV 534 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 VS Q++SV SLIPFLEHDDANRALMG+NMQRQAVP LR ++ LVGTG+E A DSG Sbjct: 535 AVSPVQIISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPERALVGTGLEAQAARDSG 594 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + +++ GVV YVDA+ I + E +++ Y L KY RSNQ+TC+NQ P V Sbjct: 595 MVTISRTDGVVSYVDANWIKVTDLEGQVHS-------YELQKYQRSNQDTCLNQRPFVFE 647 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G V G V+ADG +T+ GE+ALGQN+ + +MPW GYN+ED+IL+SER+V ED +T+IHI Sbjct: 648 GTKVVAGQVMADGSATEGGEIALGQNVLITYMPWEGYNYEDAILLSERLVYEDVYTSIHI 707 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 ++ +R TKLGPEEIT +IPNVGE AL +LDE+GI+ +GA V+ GDILVGKVTPKGE+ Sbjct: 708 EKFEIEARQTKLGPEEITREIPNVGEDALRQLDETGIIRVGAWVSSGDILVGKVTPKGES 767 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQ 952 PEEKLLRAIFGEKA DV+D+SLRVPNG G V+DV+VFTR+ G E A + + Sbjct: 768 DQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRVFTREQGDELPPGANMVVRVY 827 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + Q +K + G I +L + D P D L L + N + Sbjct: 828 VAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPY-LPDGTPIDIVLN-PLGVPSRMNVGQ 885 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 + + + G++ Sbjct: 886 VFEALLGWAGQNLDARFKVTPFDEMYGEE 914 Score = 415 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 181/487 (37%), Positives = 258/487 (52%), Gaps = 61/487 (12%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ V+ G +V G ++ G T GE L + +L + + +D+ L Sbjct: 639 LNQRPFVFEGTKVVAGQVMADGSATEGGEIAL--GQNVLITYMPWEGYNYEDAIL----- 691 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFS 973 +S ++ V+T +EK + ++ ++ +++ +E I+ G + Sbjct: 692 LSERLVYEDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRQLDETGIIRVGAWV 751 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 +LV + D+ P ++ L ++ + + L E + ++ + Sbjct: 752 SSGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRVFTR- 810 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 QGD+L PG +V+VY+A KR+IQ GDKMAGRHGNKG+IS+I P+EDMPY +GTP Sbjct: 811 ---EQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPYLPDGTP 867 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 +DIVLNPLGVPSRMN+GQ+ E LG A + + + + + A Sbjct: 868 IDIVLNPLGVPSRMNVGQVFEALLGWAGQNLDARFKVTPFDEMYGEEASLETTHGKLQEA 927 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + D + + G+I+LY Sbjct: 928 RNQTGKD---------------------------------------WVFNPDNPGKIQLY 948 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTGE F++ VTVG YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQRFGEM Sbjct: 949 DGRTGEPFDQEVTVGQSYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEM 1008 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEA+GAAYTLQE+LTVKSDD+ GR + IV G PG PESF VL++E++SL Sbjct: 1009 EVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSL 1068 Query: 1334 GINIELE 1340 ++I + Sbjct: 1069 CLDIAVH 1075 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 158/344 (45%), Gaps = 32/344 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVFD 81 +P L+ IQ SF+ F+ GL S PI Y+G EL + YRL P + Sbjct: 34 LPDLVEIQRASFRWFL------GEGLVEELESFSPITDYTGKLELHFLGKDYRLKAPKYM 87 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 V E + R TYS + V RL+ E DIKEQEV++G++PLMTD GTF+ING Sbjct: 88 VDEAKRRDSTYSVQMYVPTRLINKE-------TGDIKEQEVFIGDLPLMTDRGTFIINGA 140 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERVIV+Q+ RSPGV++ ++ K G+ Y A +IP RG+WL FE D D ++VRID+ Sbjct: 141 ERVIVNQIVRSPGVYYKAETDK---HGRRTYTANLIPNRGAWLKFETDKNDLVWVRIDKT 197 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERLRGETASF 253 RKL A ++L+AL + +I D F+ + + +EL + GE + Sbjct: 198 RKLSAQVLLKALGLSDGEIFDSLRHPEYFQKTIEKEGQFSEEEALLELYRKLRPGEPPTV 257 Query: 254 DIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + + R + R ++L + +D + + Sbjct: 258 NGGQQLLESRFFDPKRYDLGKVGRHKLNRKLRLNIPESTRVLT---PQDIVSAIDYLINL 314 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 ++ D + L + + L N + G E + + Sbjct: 315 EFDIGNPDD-IDHLGNRRVRSVGELLQNQVRVGLNRLERIIRER 357 >UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Tax=Bacteria RepID=RPOB_FRASC Length = 1141 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 375/782 (47%), Positives = 504/782 (64%), Gaps = 18/782 (2%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P L +F I +V V + R + + Sbjct: 115 FTNNNTGEIKSQTVFMGDFP--LMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDKASD 172 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + L G L Sbjct: 173 KDLYSCKVIPSRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARIL--ERFGD 230 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 P + TL D T + AL++IYR +RPGEPPTRE+A++L ENLFF+ RYDL+ VGR Sbjct: 231 FPSMRITLEKDHTAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRY 290 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG----KGEVDDIDHLGNRRIRSVGEM 459 K N+ L G+L+++DI+ ++ ++ + G + EVDDIDH GNRRIR+VGE+ Sbjct: 291 KVNKKLSLGVAHDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTVGEL 350 Query: 460 AENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 +NQ R+GL R+ER V+ER++ D++ + PQ +IN +P+ A++KEFFG+SQLSQFMDQ N Sbjct: 351 IQNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQTN 410 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 PL+ +THKRR++ALGPGGL+RERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SLS +A Sbjct: 411 PLAGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSTFA 470 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 + N +GF+ETPYRKV +G VT +I +L+A EE +V AQAN+ L +G F ED V R K Sbjct: 471 RVNPFGFIETPYRKVENGRVTGQIDWLTADEEDRHVKAQANTPLRPDGSFAEDRVLVRRK 530 Query: 640 -GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 GE D+VDYMDVS +Q+VSV ++IPFLEHDDANRALMG+NMQRQ+VP LR++ P Sbjct: 531 GGEVEFIPPDEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMQRQSVPLLRSEAP 590 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 LVGTGME A D+G V + GVV+ + A I + ++ Y L K+ R Sbjct: 591 LVGTGMEARAAKDAGDVVVCAQAGVVEDLSADYITVMHDD-------GTRRTYRLAKFRR 643 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 SNQ TCINQ P V+ G+ V G V+ADGP TD GE+ALG+N+ VAFMPW G+N+ED+I++ Sbjct: 644 SNQGTCINQKPIVNEGDRVGAGQVIADGPCTDNGEMALGKNLLVAFMPWEGHNYEDAIIL 703 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 S+R+VQ+D ++IHI+E +RDTKLGPEEIT DIPNV E L+ LDE GI+ IGAEV+ Sbjct: 704 SQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVLADLDERGIIRIGAEVS 763 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-D 937 GD+LVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G SG VI V+VF+R D Sbjct: 764 PGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSRED 823 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 G E E+ + + Q +K + G I +L A + + D P D Sbjct: 824 GDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAKILPAEDMPFLE-DGTPVDVV 882 Query: 998 LE 999 L Sbjct: 883 LN 884 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 230/749 (30%), Positives = 350/749 (46%), Gaps = 95/749 (12%) Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 + + + G V D+ + + + + + + S A + PF + Sbjct: 424 LGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSL---STFARVNPFGFIET 480 Query: 676 ANRALMGANMQRQAVPTLRADKPLV-----GTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 R + + Q ++ T + + V ++GG V+++ Sbjct: 481 PYRKVENGRVTGQIDWLTADEEDRHVKAQANTPLRPDGSFAEDRVLVRRKGGEVEFIPPD 540 Query: 731 RIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 + + +M + ++ +N+ + M P+ R + G Sbjct: 541 EVDYMDVSPRQMVSVATAM--IPFLEHDDANRALMGSNM--QRQSVPLLRSEAPLVGTGM 596 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 + ++ V ED + D T +H T+ Sbjct: 597 EARAAKDAGDVVVCAQAGV---VED--------LSADYITVMH-------DDGTRRTYRL 638 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGE 908 N G +++ IV G V G ++ G T GE L LL A Sbjct: 639 AKFRRSNQGTC----INQKPIVNEGDRVGAGQVIADGPCTDNGEMALGK--NLLVAFMPW 692 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS------- 961 + + +D+ + +S ++ V + +E+ + ++ ++ +D+ Sbjct: 693 EGHNYEDAII-----LSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVL 747 Query: 962 ---EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 +E I+ G VLV + + P +R L ++ ++ + L + Sbjct: 748 ADLDERGIIRIGAEVSPGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPH 807 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 E ++ ++ GD+L PGV ++V+VY+A KR+I GDK+AGRHGNKGVI+K Sbjct: 808 GESGKVIGVRVFSR----EDGDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAK 863 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I P EDMP+ E+GTPVD+VLNP GVP RMNIGQILETHLG AK G ++++ + +E Sbjct: 864 ILPAEDMPFLEDGTPVDVVLNPHGVPRRMNIGQILETHLGWVAK-TGWQVDSGTEDWKER 922 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 + A+ G +ATPVFDGA+E EI L Sbjct: 923 LRGI-----------------------------GADAASAGTNVATPVFDGAREEEITGL 953 Query: 1199 LKLGDLPTSG--------QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 L G + +L+DGRTGE + PV VGY+Y+LKL HLVDDK+HARSTG Sbjct: 954 LDSTLPNRDGIQLIGSSGKAKLFDGRTGEPYPYPVAVGYIYILKLLHLVDDKIHARSTGP 1013 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 YS++TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR K+Y+ IV Sbjct: 1014 YSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVVGRVKVYEAIVK 1073 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 G + EPG+PESF VL+KE++SL +N+E+ Sbjct: 1074 GENIPEPGIPESFKVLIKEMQSLCLNVEV 1102 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 166/348 (47%), Gaps = 38/348 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLEAAFRSVFP 58 F K + L+VP LL++Q SF I D GLE F+ + P Sbjct: 12 FAKIIEPLEVPDLLALQTQSFDWLIGSDAWAERVQEAIDSGRDDVPITSGLEEVFKEISP 71 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+ +SG+ L + +R P + V+EC+ + +T+SAPL V +IK Sbjct: 72 IEDFSGSMSLSFRDHRFEPPKYSVEECKDKDMTFSAPLFVTAEFTN-------NNTGEIK 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 Q V+MG+ PLMT GTFVINGTERV+VSQL RSPGV+F+ K +S K LY+ ++IP Sbjct: 125 SQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDK--ASDKDLYSCKVIP 182 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK-- 236 RG+WL+FE D +D + VRIDR+R+ T++L+AL + +IL+ F + I K Sbjct: 183 SRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARILERFGDFPSMRITLEKDH 242 Query: 237 ------LQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 +++ + GE + + ++ R A+ R + L Sbjct: 243 TAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRYKVNKKLSLGVAH 302 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 G + D + + A + + + + G++RI T+ Sbjct: 303 ---DVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTV 347 >UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA polymerase beta subunit n=1 Tax=Hydra magnipapillata RepID=UPI00019270C2 Length = 1140 Score = 747 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 452/776 (58%), Positives = 552/776 (71%), Gaps = 5/776 (0%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK-- 283 KV+ E+++ ++ M VP L SF I +V V + R + Sbjct: 118 NKVVKEVKEQEVYMGEVP--LMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSG 175 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + D+ + L + + + L G L LD Sbjct: 176 KLLFSARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQ 235 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 G YIS+TLR D T D +A V IYRMMRPGEPPT +A ++LF+ LF++ D YDLS VGRM Sbjct: 236 GAYISQTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRM 295 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 KFN + R E G +L+ +DI+ V+K L+D+RNG+G+VDDIDHLGNRR+R VGE+AENQ Sbjct: 296 KFNAKMGRSESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQ 355 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 +R GL R+E+AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFM+Q NPL+E Sbjct: 356 YRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMNQTNPLAE 415 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ITHKRR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL++YA+ NE Sbjct: 416 ITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNE 475 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 YGF+ETPYR+V D VT+EI YLSAIEEG YVIAQAN+ LD+EG DLV+ R KGES Sbjct: 476 YGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKEGTLTGDLVSAREKGESI 535 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 L S D+V YMDVS Q+VSV ASL+PFLEHDDANRALMGANM RQAVP LR +KP+VGTG Sbjct: 536 LVSADRVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTG 595 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 +ER AVDSG A RGG+V YVDA+R+VI+VN+ E GE G+DIYNL KY RSNQNT Sbjct: 596 IERVAAVDSGTVVTATRGGIVDYVDATRVVIRVNDAEAQAGEVGVDIYNLIKYQRSNQNT 655 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 I+Q P V G+ + +GDV+ADG STDLGE+A+GQNM VAFMPWNGYNFEDSIL+SERVV Sbjct: 656 NIHQRPIVKKGDKLSKGDVIADGASTDLGEIAIGQNMLVAFMPWNGYNFEDSILISERVV 715 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 EDR+T+IHI+EL ++RDTKLG EEIT DIPN+ E L++LDESGI+Y+GAEV GD L Sbjct: 716 AEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDTL 775 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 VGKVTPKGET LTPEEKLLRAIFGEKASDVKD+SLRV G SGTVIDVQVFTR+G E Sbjct: 776 VGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGDELPA 835 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 L++ ++ + ++ + G + + + D P D L Sbjct: 836 GVLKMVKVYIAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPY-LADGTPVDIVLN 890 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 233/492 (47%), Positives = 304/492 (61%), Gaps = 36/492 (7%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G +++ GD++ G T GE + +L A + +DS L +S V Sbjct: 662 IVKKGDKLSKGDVIADGASTDLGEIA--IGQNMLVAFMPWNGYNFEDSIL-----ISERV 714 Query: 929 IDVQVFTRDGVE----------KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 + +T +E + + L + + + +E I+ G Sbjct: 715 VAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDT 774 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + P ++ L ++ + L + ++ + Sbjct: 775 LVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTRE----- 829 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L GVLK+VKVY+AVKRR+QPGDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVL Sbjct: 830 GDELPAGVLKMVKVYIAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPYLADGTPVDIVL 889 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQ+LE HLG A KG+G +I ML+++ ++R F+++ Y+ +K Sbjct: 890 NPLGVPSRMNIGQVLEVHLGWAGKGLGQRIGDMLQREAASTEIRGFLEQVYNST---GRK 946 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR------- 1211 DL+ SD EV +A+ L G+P A+PVFDGA E EI ++L+L + + Sbjct: 947 EDLAQLSDAEVQEMAKELTSGVPFASPVFDGATEKEIGDMLQLAYPDDVAKAKGLTATRT 1006 Query: 1212 ---LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 LYDGR+G+ FER TVGYM+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQ Sbjct: 1007 QAQLYDGRSGDAFERTTTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ 1066 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 RFGEMEVWALEAYGA+Y LQEMLTVKSDDV GRTK+Y+NIV G H +E GMPESFNVL+K Sbjct: 1067 RFGEMEVWALEAYGASYVLQEMLTVKSDDVQGRTKVYENIVKGEHSIEAGMPESFNVLVK 1126 Query: 1329 EIRSLGINIELE 1340 EIRSLGI+IEL+ Sbjct: 1127 EIRSLGIDIELD 1138 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 157/381 (41%), Positives = 218/381 (57%), Gaps = 23/381 (6%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M Y+YTE+KRIRK+FG R VL++PYLL +Q D++ F++ D GL+AAF + Sbjct: 1 MAYTYTERKRIRKNFGSRDSVLEIPYLLQMQKDAYTAFLQADVGPKKRTNEGLQAAFEAA 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT--- 113 FPI S++G E++Y+ Y L +P FDV+ECQ RG+TY++ +R K++L+IY+RE+ G Sbjct: 61 FPIVSHNGFVEMKYLEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTGQNKV 120 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 VK++KEQEVYMGE+PLMT G+F+INGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ Sbjct: 121 VKEVKEQEVYMGEVPLMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 ARIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ E IL FF I Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQGAYIS 240 Query: 234 ----------DNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDD 281 + ++ + GE + D +++ +R R Sbjct: 241 QTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAK 300 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 + E V+ + I L+ N +D + L + + L N Sbjct: 301 MGRSESTGP----MVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQY 356 Query: 342 DHGPYISETLRVDPTNDRLSA 362 G E + Sbjct: 357 RTGLARIEKAVKERLGQAEQE 377 >UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 Tax=Bacteria RepID=RPOB_MYCLB Length = 1178 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 377/792 (47%), Positives = 506/792 (63%), Gaps = 28/792 (3%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P + E +F I +V V + R + + + Sbjct: 139 FINNNTGEIKSQTVFMGDFP--MMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTE 196 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 V+ I + ++ + + + + + L G + T Sbjct: 197 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQ--ITERFGF 254 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + TL D T AL++IYR +RPGEPPT+E+A++L ENLFF E RYDL+ VGR Sbjct: 255 SEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRY 314 Query: 404 KFNRSLLRE--EIEGSGILSKDDIIDVMKKLIDIRNGKG------------EVDDIDHLG 449 K N+ L E+ S L+++D++ ++ L+ + G+ E DDIDH G Sbjct: 315 KVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFG 374 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS 509 NRR+R+VGE+ +NQ RVG+ R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFFG+S Sbjct: 375 NRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTS 434 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 QLSQFMDQNNPLS +THKRR+SALGPGGL+RERAG EVRDVHP+HYGR+CPIETPEGPNI Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 GLI SLSVYA+ N +GF+ETPYRKV DGVV+DEI YL+A EE +V+AQANS +DE G F Sbjct: 495 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRF 554 Query: 630 VEDLVTCRSK-GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 +E V R K GE + +VDYMDVS +Q+VSV ++IPFLEHDDANRALMGANMQRQ Sbjct: 555 LEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 614 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 AVP +R++ PLVGTGME A+D+G VA++ GV++ V A I + ++ Sbjct: 615 AVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADD-------GTR 667 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 Y + K+ RSN TC NQ P V G+ VE G V+ADGP T+ GE+ALG+N+ VA MPW Sbjct: 668 RTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWE 727 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 G+N+ED+I++S R+V+ED T+IHI+E +RDTKLG EEIT DIPNV + L+ LDE Sbjct: 728 GHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 787 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 GIV IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G SG V Sbjct: 788 GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKV 847 Query: 929 IDVQVFTRDGVEKDK-RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 I ++VF+ + ++ E+ + + Q +K + G I +L A + Sbjct: 848 IGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF- 906 Query: 988 KLDKLPRDRWLE 999 D P D L Sbjct: 907 LPDGTPVDIILN 918 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 156/299 (52%), Gaps = 30/299 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ-----------DPEGQYGLEAAFRS 55 R F K + L+VP LL +Q DSF+ I D + GLE Sbjct: 33 PGAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYE 92 Query: 56 VFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + PI+ +SG+ L + R E V+EC+ + +TY+APL V + Sbjct: 93 LSPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFIN-------NNTG 145 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +IK Q V+MG+ P+MT+ GTF+INGTERV+VSQL RSPGV+FD K S+ K L++ + Sbjct: 146 EIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDK--STEKTLHSVK 203 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF----- 230 +IP RG+WL+F+ D +D + VRIDR+R+ P T++L+AL +T+EQI + F I Sbjct: 204 VIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLE 263 Query: 231 ---EIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKL 284 + ++ +++ + GE + + ++ ++ R AR R + L Sbjct: 264 KDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL 322 >UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridia RepID=RPOB_CARHZ Length = 1132 Score = 742 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 405/903 (44%), Positives = 543/903 (60%), Gaps = 50/903 (5%) Query: 201 RRKLPATIIL-RALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 + K R Y+ + + K EI++ ++ + P L E +F Sbjct: 70 KPKYSVEECKERDFTYSAPLRVKVRLLNKETGEIKEQEVFLGDFP--LMTEKGTFIFNGA 127 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 +V + + R + + + K + + I + ++ + + + Sbjct: 128 ERVVISQMVRSPGVYFSEQVDPNGKKMYL-ATIIPNRGAWLEFETDVNDHIYVRIDRTRK 186 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 L + L G++ + DH I TL D T+ R AL+EIY+ +RPGEPPT Sbjct: 187 LPVTVLLKALGYESKGRI-AELFDHDDKIIATLERDNTDSREEALIEIYKKLRPGEPPTV 245 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE------------------------I 414 E+A++L +++FF RYDL VGR K + L Sbjct: 246 ESAKTLLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLEEDGEKEYDKYLNDYVPVKR 305 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 E L+ +DII ++ L+ + G+G+VDDIDHLGNRR+RSVGE+ +NQFR+GL R+ER Sbjct: 306 EFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARMERV 365 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 V+ER+++ D D+L PQ +IN +PI AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALG Sbjct: 366 VRERMTIQDADSLTPQVLINTRPIVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 425 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ YA+ NE+GF+ETPYRKV Sbjct: 426 PGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGNLTTYARVNEFGFIETPYRKV 485 Query: 595 TD--GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 GVVT+EI YL+A EE Y+IAQAN L EG F++++V R E +VD+ Sbjct: 486 DKERGVVTNEIVYLTADEEEKYIIAQANVRLSPEGKFLDEMVNARHGSEILHVEPSKVDF 545 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 +DVS +QV SV SLIPFLEHDDANRALMGANMQRQAVP +R + P+VGTG+E A DS Sbjct: 546 VDVSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAVPLIRTEAPVVGTGIEYKAAKDS 605 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 GV +AK GVV+ V A IVI+ ++ + ID Y L K+ RSNQ TCINQ P V Sbjct: 606 GVVVLAKNPGVVERVTADEIVIRNDQGQ-------IDRYKLIKFQRSNQGTCINQKPIVR 658 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 GE VE+ ++ADGPSTD GELALG+N+ VA+MPW GYN+ED+IL+SE++V+ED FT+IH Sbjct: 659 KGERVEKDQIIADGPSTDHGELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIH 718 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 I+E C +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GDILVGKVTPKGE Sbjct: 719 IEEYECDARDTKLGPEEITRDIPNVGEDALKDLDERGIIRIGAEVRPGDILVGKVTPKGE 778 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEM 951 T+LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV+VF+R +G E + + Sbjct: 779 TELTAEERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRV 838 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + Q +K + G + +L + D P + L L + N Sbjct: 839 YIAQKRKISVGDKMAGRHGNKGVVARILPEEDMPF-LPDGTPVEIVLN-PLGVPSRMNIG 896 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDL-----APGVLKIVKVYLAVKRRIQPGDKM 1066 + L + +D+ G+ + K+ + R G+ Sbjct: 897 QILECHLGWAAKALGINVATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRT---GEPF 953 Query: 1067 AGR 1069 R Sbjct: 954 DSR 956 >UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Tax=Bacteria RepID=RPOB_PELTS Length = 1224 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 401/804 (49%), Positives = 513/804 (63%), Gaps = 41/804 (5%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K E+++ + M P L E +F I +V V + R + + K Sbjct: 96 LINKETGEVKEQDVFMGDFP--LMTEKGTFIINGAERVIVSQLVRSPGVYFDETIDPSGK 153 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + G+ + + Sbjct: 154 KLY-TATIIPNRGAWLEFETDVNDHIFVRIDRTRKIPATVLVRALGYGTKAQV-AELFNE 211 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 I ETL D T+ ALVEIY+ +RPGEPPT ++A SL +LFF RYDL+ VGR Sbjct: 212 DKNILETLARDNTDSEEEALVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRY 271 Query: 404 KFNRSLLREE-------------------------IEGSGILSKDDIIDVMKKLIDIRNG 438 K + L E L+K+DII+ ++ L+ + NG Sbjct: 272 KIQKKLKHGVLYRYGPNPDGKTVFDPYLKKEVPQKREFIRELTKEDIIETIRYLLKLMNG 331 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPI 498 +G+VDDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ER+++ D+D + PQ +IN +P+ Sbjct: 332 EGQVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVDVITPQVLINIRPV 391 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+ Sbjct: 392 VAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRM 451 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG--VVTDEIHYLSAIEEGNYVI 616 CPIETPEGPNIGLI SLS YA+ NE+GF+ETPYRKV VTDEI YL+A EE YVI Sbjct: 452 CPIETPEGPNIGLIGSLSTYARINEFGFIETPYRKVDKENRRVTDEIVYLTADEEEGYVI 511 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 AQAN+ LDEEG F+E V RS E + D+VDYMDVS +QV S+ +LIPFLEHDDA Sbjct: 512 AQANAPLDEEGRFIEPRVNARSP-EIVVVPADRVDYMDVSPKQVFSIATALIPFLEHDDA 570 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 NRALMGANMQRQAVP L+A PLVGTG+E A DSGV +AK G V+ V ++ I I+ Sbjct: 571 NRALMGANMQRQAVPLLKAQAPLVGTGIEYKAARDSGVVVIAKESGTVEKVTSTHIEIRN 630 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 + +D Y L K+TRSNQ TC+NQ P V GE VE G V+ADGPSTD GELAL Sbjct: 631 D-------RGYLDRYKLLKFTRSNQGTCVNQKPIVKKGERVEAGQVIADGPSTDYGELAL 683 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 G+N+ VAFMPW GYN+ED+ILVSE+ V+ED FT+IHI+E C +RDTKLGPEEIT DIPN Sbjct: 684 GRNVLVAFMPWEGYNYEDAILVSEKTVKEDYFTSIHIEEYECDARDTKLGPEEITRDIPN 743 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 VGE L LD+ GI+ +GAEV GDILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+ Sbjct: 744 VGEEILKDLDDRGIIRVGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDT 803 Query: 917 SLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 SLRVP+G SG V+DV+VF+RD G E ++ + + Q +K + G I Sbjct: 804 SLRVPHGESGKVVDVKVFSRDNGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVI 863 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLE 999 +L + D P + L Sbjct: 864 ARILPEEDMPF-LPDGTPIEIVLN 886 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 133/387 (34%), Positives = 200/387 (51%), Gaps = 48/387 (12%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y R+R +FG+ +VLD+P L+ +Q +S++ F+E+ GL F+ + PIQ Sbjct: 1 MAYPEKVGARVRYNFGRLREVLDLPNLIEVQRNSYKWFLEE------GLREVFQDISPIQ 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 55 DFTGNLVLEFLDYTLGEPKYTVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +V+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+FD SGK LY A IIP R Sbjct: 108 DVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFDET---IDPSGKKLYTATIIPNR 164 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI---------FE 231 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y T+ + F + Sbjct: 165 GAWLEFETDVNDHIFVRIDRTRKIPATVLVRALGYGTKAQVAELFNEDKNILETLARDNT 224 Query: 232 IRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKL----- 284 + + +E+ GE + D + ++ + R A R + +K Sbjct: 225 DSEEEALVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYR 284 Query: 285 ----------------IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 EVP + + + K+ I E+ L+ N E +D + L Sbjct: 285 YGPNPDGKTVFDPYLKKEVPQKREFIRELTKEDIIETIRYLLKLMNGEGQVDDIDHLGNR 344 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDP 355 + + L N G E + + Sbjct: 345 RLRSVGELLQNQFRIGLSRMERVVRER 371 >UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax=Thermotogaceae RepID=RPOB_THEP1 Length = 1263 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 398/1132 (35%), Positives = 600/1132 (53%), Gaps = 101/1132 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS------ 61 +R R FGK + L +P L+ IQ S+++F+E+ GL + PI S Sbjct: 7 GRRTRVSFGKTQEPLPIPDLVEIQKISYRRFLEE------GLLEVLKKFSPIYSQATRSD 60 Query: 62 ---YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 L++VS R+GEPV D EC+ +G+TYS P+ RL + ++K Sbjct: 61 LKKSDRGFALEFVSTRIGEPVVDPLECKAKGLTYSVPIYATARLTDMKS-------GEMK 113 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 E+EV++G IP MTD GTF+ING ERV+V+Q+ SPG++F S+ + Y +P Sbjct: 114 EEEVFLGYIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYI-----DREEYGGYFLP 168 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 RG+WL+ DP D + +K+ + L+ + Y ++ + + + ++ L Sbjct: 169 SRGAWLEVILDPYDGVLYAGLDGKKVNLFLFLKTIGYEKDEDILSLYPTYLDADDEDSLL 228 Query: 239 ME----LVPERLRGET--------ASFDIEANGKVYVEKGR-RITARHIRQLEKDDVKLI 285 + L+ + G+ + D+ + + + +I + + ++L+ Sbjct: 229 LHVGSILLEDIYDGDRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEKMLELV 288 Query: 286 EVPVEYIAGKVVAKDYIDESTGEL---ICAANMELSLDLLAKLSQSG------------- 329 E + + + L + L +++ + Sbjct: 289 SSSGEEGEEEEEKTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFFNPERY 348 Query: 330 -HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM----MRPGEPPTREAAE-S 383 + N+ YI + V+ D A ++Y ++P + Sbjct: 349 DLSEVGRYKVNERLRNAYIRYLIEVEG-EDPEEARKKVYNENSLVLKPLDIVLASRILFD 407 Query: 384 LFENLF---FSEDRYDLSAVGRMKFN-------------RSLLREEIEGSGILSKDDIID 427 FE + F D Y+L + R+ R L+ G+ S ++ Sbjct: 408 YFERRYVNDFEIDSYELRNLIRIFKEEYLEKRKTASYDLRKLVSVFRRNYGVTSDLSVLA 467 Query: 428 VMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-LGDL 484 ++ + +I D DHLGN+R+R+VGE+ + +F R ++A++ERL+ + L Sbjct: 468 AIRYISNINKELPSIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINSL 527 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + Q +IN K I + V +FF +QLSQFMDQ NPLSE+THKRR+SA+GPGGL RE Sbjct: 528 SKVSIQSLINIKSIISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKV 587 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 FE R+VH + YGR+CPIETPEG NIG I SL++Y + +EYGFL TPYRKV +G VTDE+ Sbjct: 588 FEARNVHYSQYGRLCPIETPEGANIGFITSLAIYTKIDEYGFLMTPYRKVVNGKVTDEVV 647 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 YL A EE ++ I A + +DEEG+ + + V R + L R++VD+MDVST+Q SV Sbjct: 648 YLRANEEEDFKIVPATTPVDEEGNIIPERVVARVGEDIRLVPREEVDFMDVSTKQPFSVS 707 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 ASLIPFLEHDDA+RALMG+NMQRQAVP L+A+ P VGTGME A +SG +A+ G+V Sbjct: 708 ASLIPFLEHDDASRALMGSNMQRQAVPLLKAEAPFVGTGMEWEAAKNSGYVTLAEHDGIV 767 Query: 725 QYVDASRIVIKVNEDE---MYPGEAG--IDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 + VDA+RIV+ ++ MY + +D Y L K+ RSNQ+T INQ P V+ G+ V++ Sbjct: 768 KEVDAARIVVHRTDENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKK 827 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 GD +ADGP+TD+GELALG+N+ VAFMPW GYN+ED+ILVS+ +++ED FT+IHI+ Sbjct: 828 GDPIADGPATDMGELALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYETQ 887 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD------ILVGKVTPKGET 893 +R+T+LGPEEITADIPNV + L LDE+GI+ +GA V ILVGKVTPKGE Sbjct: 888 ARETRLGPEEITADIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGEG 947 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQ 952 TPEEK++R++FGE+ DVKD+SLR+P+GV G VI V V+ ++ + E L++ + Sbjct: 948 DTTPEEKIIRSVFGERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIAELGAGVLKLVRVY 1007 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + K + G + +L + D P L L + N + Sbjct: 1008 VASRKTLDIGDKLAGRHGNKGVVSNILPKEDMPF-LPDGTPVQMVLN-PLGIPSRMNVGQ 1065 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 L L K + + D++ + + KR + GD Sbjct: 1066 ILETHLGWLAKLTGKWFATPVFEGAKEDEILRPLYEE-----RKKRGLHLGD 1112 >UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Tax=Mollicutes RepID=RPOB_AYWBP Length = 1273 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 373/1076 (34%), Positives = 571/1076 (53%), Gaps = 105/1076 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F++ G++ + PI+SY+G+ + Sbjct: 10 KKAQRRNYSKTIYDVDLPNLIEIQNQSFDWFLKH------GIKELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + Y L P + ++E +I+ ++Y A L VK L + K+ + + E+ Sbjct: 64 IHFDDYFLTPPKYSIEETKIKDISYVAQLFVKTTL-------ENVLTGETKQSNILLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+INGTERV+VSQ+ RS V+F + + +Y+ ++IP RG+W+++E Sbjct: 117 PLMTSTGTFIINGTERVVVSQIVRSASVYFAGNFD--IKLNRTIYSGQVIPSRGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ----------ILDLFFEKVIFEIRDNKL 237 K+ L+ ++DR +K+P + + AL + +++ ILD F+K ++ + Sbjct: 175 EGSKEILYAKLDRSKKIPLSNFIYALGFDSKEAIENVFGKSAILDSVFDKET-DMDSDNA 233 Query: 238 QMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +EL + +GE D + ++ + A+ R + ++ Sbjct: 234 LVELYSKIRQGEKVPVDTARDFIRTRLFDQKKYDLAKVGRYKFNKKLDVLTRAENT---- 289 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D+++ E++ A + L+ + +A L Q+ H ++ +F + E + Sbjct: 290 YLACDFVNPENQEIMIAQDELLTKEKIAILKQNRHFLLQEIFDAKHNLENETDEEILAYK 349 Query: 356 TNDRLSALV-----------------------EIYRMMRPGEPPTREAAESLF------- 385 + + L +I +R E F Sbjct: 350 KYPQKNELFTKTNIINSRTGEVLVAKDTLVNDDIINHLRHNIHTLDEKVSKFFLGTKDIY 409 Query: 386 ------ENLFFSEDRYDLSAVGRMKFNRS---LLREEIEGSGILSKDDIIDVMKKLIDIR 436 + +F S K + ++ E ++ D+I + +++ Sbjct: 410 QKEADRQGVFNEILEVYTSKDESGKLYNKVKLIGNDQRETKKHITLSDVIASINYYLNLY 469 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM-PQDMINA 495 G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S + P D++N Sbjct: 470 ENVGTVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKNIKDMISTSKFGEVNGPGDLVNF 529 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 + + +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDVH +HY Sbjct: 530 TFLMSVIKTFFTNSRLSQFMDQINPLAELTQKRRVSALGIGGINRDRAGIEVRDVHNSHY 589 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT----DGVVTDEIHYLSAIEE 611 GR+CPIETPEGP+IGLI SLS YA+ N+YGF++TP+ KV ++ +I YL+A +E Sbjct: 590 GRLCPIETPEGPSIGLITSLSTYAKVNKYGFIQTPFFKVLQQDGKTTLSRDIDYLTADQE 649 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 +IA A LD F + + RS GE+ +F R+Q+ Y DVS +Q+VSV S IPFL Sbjct: 650 KEEIIASAGFVLDANNSFQDKKIIARSNGETGIFERNQITYADVSPKQIVSVATSSIPFL 709 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EH+DA+RALMGANMQRQAVP L + P+VGTG+E A DSG +A+ G V YVDA + Sbjct: 710 EHNDASRALMGANMQRQAVPLLIPESPIVGTGVEYRAAKDSGCLIIARESGFVTYVDAQK 769 Query: 732 IV--IKVNEDEMYPGEAGIDI-----------------------YNLTKYTRSNQNTCIN 766 I+ K N+ G+ D Y L + +SNQ+T + Sbjct: 770 IIITKKPNQTVSLNGKTLYDTTQEFTYTQAKVLYENNHKEYQAEYTLINFAKSNQDTLVL 829 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P V LGE + GD+L GPST GELALG+N+ VAFM W GYN+ED+I++SE +V+ D Sbjct: 830 QKPIVVLGEHINEGDILVSGPSTSQGELALGRNVTVAFMTWEGYNYEDAIIMSEELVKHD 889 Query: 827 RFTTIHIQELACVSRDTKL--GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 +T+IHI + +R+ K G EEIT ++PNVG A+ LDE GI+ G+EV GDILV Sbjct: 890 VYTSIHIDKYEVQTRELKKGSGQEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILV 949 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDK 943 GK+TP+G + +P EKL++ + GEKA + KDSSLRVP G G V V F+R +G Sbjct: 950 GKITPQGNIEPSPSEKLIQIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSRKNGDVLPA 1009 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 E + + + +K + G I +L + D P D L Sbjct: 1010 GVNENIRVFIAKKRKINEGDKMAGRHGNKGVISRILPKEDLPY-MADGTPIDIMLN 1064 Score = 361 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 179/517 (34%), Positives = 266/517 (51%), Gaps = 82/517 (15%) Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQ 894 ++ + I N L K IV +G + GDILV G T +GE Sbjct: 803 YENNHKEYQAEYTLINFAKSNQDTLVLQK----PIVVLGEHINEGDILVSGPSTSQGELA 858 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA--------- 945 L + A + + +D+ + +S ++ V+T ++K + Sbjct: 859 LGR--NVTVAFMTWEGYNYEDAII-----MSEELVKHDVYTSIHIDKYEVQTRELKKGSG 911 Query: 946 ---LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + E + +E I+ G + +LV ++ P ++ +++ + Sbjct: 912 QEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNIEPSPSEKLIQIVI 971 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 ++ ++ + L + E +++ GD L GV + ++V++A KR+I Sbjct: 972 GEKAREYKDSSLRVPFGEGGIVQSVHYFSRK----NGDVLPAGVNENIRVFIAKKRKINE 1027 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDKMAGRHGNKGVIS+I P ED+PY +GTP+DI+LNPLGVPSRMNI Sbjct: 1028 GDKMAGRHGNKGVISRILPKEDLPYMADGTPIDIMLNPLGVPSRMNI------------- 1074 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 G + L + + G+ + Sbjct: 1075 --GQILEIHLGMAAK---------------------------------------KLGIKV 1093 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 ATPVFDG + ++KE++K +L G++ LYDGRTGE ++ ++VG MYM+KL+H+VDDK Sbjct: 1094 ATPVFDGVNDYDLKEIMKEANLEPDGKMVLYDGRTGEPYDSRISVGVMYMVKLSHMVDDK 1153 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302 +HAR+ G Y+LVTQQP+GGK Q GGQRFGEMEVWAL AYGAA+TLQE+LTVKSDD+ GR Sbjct: 1154 LHARNVGPYTLVTQQPMGGKVQNGGQRFGEMEVWALYAYGAAHTLQEILTVKSDDIVGRN 1213 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 K Y IV G +P +PESF V +KE++SLG+ +EL Sbjct: 1214 KTYSAIVQGTQLPKPSIPESFRVFIKELQSLGLYVEL 1250 >UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Carsonella ruddii RepID=RPOB_CARRP Length = 1267 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 404/1343 (30%), Positives = 690/1343 (51%), Gaps = 92/1343 (6%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + +++KK K ++PYLL Q+ S+ F+ + ++ + FP+ Sbjct: 10 FCFSKKKFFHK--------CNLPYLLHNQIGSYNSFLSSKYNSLFSIKKVLKQYFPLICN 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 + N ++ L EP + +IR + + L + + + + + +++ Sbjct: 62 NKNIFIKLKKIELLEPCNTEKYTKIRNLHLFSTLYMYISIYVINKNLNV-------YKKI 114 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 ++G IP MT G F+ING +R+++SQ +S G++F ++K K IIP +GS Sbjct: 115 FLGNIPSMTKKGNFIINGIDRILISQFTKSYGIYFYTEKKKKK--------CIIIPLKGS 166 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+F +N + D++ + L L Y + + FF K+ +I K ++ + Sbjct: 167 WLEFII--TNNFLIVFDKKINFEINVFLICLGYNKKYFFNFFFFKIKIKIIRGKKRIFFL 224 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 + + K K I + ++ I GK+ K+Y Sbjct: 225 LNK----------------------------KKYFYKIYNKYICISIKKILGKLFGKNYF 256 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + L + ++ + + +F + + Y+ + Sbjct: 257 LKKNTFL---KFNIIDINKVNLILNYPIYFFFIIFLKKIINLNYLIYIYKNFKLKINKEL 313 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L + F F + +Y S +G + + L ++ I + Sbjct: 314 LQYKKGYIIN------------FFRNLFYKKKYFYSLIGAKRIFKRLFLKKNNKLTIYLE 361 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + +I+N D+ D+L N+ I + G++ +F +V + + +++ Sbjct: 362 IIKKILKFIKFNIQN-----DNFDNLENKLILNCGKLLSIKFDFLFKKVIKFINYKMNNF 416 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 ++N+ I+ +K++F +++LSQF+DQNNPL+EI+H R+IS + G+ +E Sbjct: 417 K-KYKDLDFIVNSDIITIGLKDYFCNNELSQFLDQNNPLAEISHNRKISLISGIGIEKEN 475 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 GF++RD+H +HY +VCPI+TPEG NIGLINSL+ ++ N+Y F+ T Y+ G + Sbjct: 476 CGFDIRDIHYSHYCKVCPIDTPEGHNIGLINSLAYLSKVNKYNFISTIYKISILGKILG- 534 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEG--HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 I +L + + I NS ++ F R +D +++ Q+ Sbjct: 535 ITFLDNKFDKHKFIVNFNSTIETIYGEIFRSPYFEARKTNYYYYKKFLNIDLIEICGDQI 594 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 +SVGASLIPFL H+DANR LMG+NMQRQAVP + ++ P+VGTG E + ++S ++ Sbjct: 595 ISVGASLIPFLSHNDANRCLMGSNMQRQAVPLIDSENPIVGTGNELEIGLNSNYNILSDL 654 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G V Y D +I+IK N I Y L KYTR+NQNT +NQ V G+ V+ G Sbjct: 655 NGYVLYSDNYKIIIKNNN--------FIKTYFLEKYTRTNQNTILNQYTKVLKGDFVKVG 706 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +++AD ST GE++LG+N+RVAFM W GYNFEDSIL+S ++ ++ F +IHI E V Sbjct: 707 NIIADSNSTKNGEISLGKNLRVAFMSWYGYNFEDSILLSSSILNKNNFNSIHIYEFITVL 766 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + + G E ++ + E +K+ ++GI+ IG V D++VGK+ PK + + +PEEK Sbjct: 767 KYNENGFEIVSNECFGSNEKIKNKV-KNGIIKIGEFVFSKDVIVGKMIPKKKRKFSPEEK 825 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 L + +F E + + L VP + GT+I V F K+K ++ QL K++ Sbjct: 826 LFKIVFSESNFNYYEQPLTVPKNIKGTIIAVNDFK-IFYFKNKIFKLLKFEQLNYTCKNI 884 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT----DEEKQNQLEQLAE 1016 + ++I+ +L + +K + + +++ +L Sbjct: 885 NNFFYETFNYYLTKIKKLLFNNKITIKKKRINSYNININNIFKIKCFNKKINFKLNIFKN 944 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076 + + K+ + DD +++I+K+ +AVK++I GDKM+GRHGNKGV+ Sbjct: 945 IISNELLKKKNIFVYKKINFIKHDDFENSIIRIIKIKIAVKKQIAIGDKMSGRHGNKGVV 1004 Query: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ 1136 S I E+MPYD+ G +D++LNPLGVPSRMN+GQ+LE L + + +K Sbjct: 1005 SNIIDYENMPYDKFGNKIDLILNPLGVPSRMNVGQLLEVFLA-GSLNLIKSFFLKIKNLN 1063 Query: 1137 EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIK 1196 +++ + + + ++L+ F++ V+++ +N++ + + F ++ Sbjct: 1064 KISYFKMKLFIKIIFKCIYDKNINLNIFNNSLVLKIFKNIKNQLNVCVHNFYNFNVNKVN 1123 Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 ++K + + ++ L+DG TG+++ + V VGY+Y +KLNHLV DK+++RS G YS+VTQ Sbjct: 1124 NIIKTIGINKNCELLLFDGITGKRYLQLVNVGYIYFMKLNHLVIDKIYSRSIGPYSIVTQ 1183 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME 1316 QPLGGK+ GGQR GEMEVWALEAYGAA+ L+EMLT+KSDD+ GR ++YKNI+ G + Sbjct: 1184 QPLGGKSNLGGQRLGEMEVWALEAYGAAFLLKEMLTIKSDDILGRIELYKNIIKGINDAN 1243 Query: 1317 PGMPESFNVLLKEIRSLGINIEL 1339 G+PESF VL+KEI+SL +I++ Sbjct: 1244 SGIPESFQVLMKEIQSLCFDIKI 1266 >UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax=Thermotogaceae RepID=RPOB_PETMO Length = 1187 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 384/1033 (37%), Positives = 575/1033 (55%), Gaps = 107/1033 (10%) Query: 8 KKRIRKDFGKRPQVLDV-PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ------ 60 +R RK FGK P+ ++ L+ IQ DSF+ F+++ + + + PI+ Sbjct: 9 GRRERKFFGKVPEKTEIYEDLVKIQKDSFRDFLDKK------IMESIKRYMPIKIPVKAS 62 Query: 61 -SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 + + +V + + F EC+ +G+TY+ +K+R+ T + I++ Sbjct: 63 GKKNKEFLIDFVDVKFEDSSFSENECRDKGLTYAGKAYLKVRIT------DSATGEMIEK 116 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 ++++ IP MT+ G F++NG ERVIV+QL RSPGV+F ++ S K ++ A +P Sbjct: 117 DDIFLCNIPYMTERGIFIVNGAERVIVNQLVRSPGVYFIKEEETDTS--KEMFIAHFLPI 174 Query: 180 RGSWLDFEFDP---KDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEIRDN 235 +G+WL+ ++P K+ L VRIDR+RK + LRAL Y + IL LF +++ + Sbjct: 175 KGAWLEILYNPNPGKEVLQVRIDRKRKFNFFLFLRALGYENDLDILRLFPKEIDLDDE-- 232 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 VE + L ++ ++ P + G Sbjct: 233 ---------------------------VELSNYNNCTVLSDLSFQELDDMDPPRKSTYGM 265 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + ++L L + K + + + + Sbjct: 266 KLY---------------------EVLELLKKYEIKSVTVAHLVAEITLEKMKKRYEKEE 304 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL----- 410 L A EI+ ++P E P + A+ E+++F+ +++D S +GR K L Sbjct: 305 RLTSLEAYKEIFSKLKPTEIPRAQKAKEEIEDMYFNPEKFDFSQIGRQKIQVKLRKAYID 364 Query: 411 -----------------REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + + + K DII + L+ ++ +D DHLGN+R+ Sbjct: 365 YLREVEKKDISEDMEDKIKYPIKTFAVDKLDIILSARYLLHVKENIEGLDTRDHLGNKRV 424 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLS 512 RSVGE+ + +F ++ + E+L+ + ++ + PQ +IN++ I A +FF SSQLS Sbjct: 425 RSVGELMQIEFERAFSKMIQHAPEKLAGVQSINKISPQSLINSRSIMTAFHQFFASSQLS 484 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 QF+DQ NPL+E+THKRR+SA+GPGGL RE A FEVRDVH +HYGR+CPIETPEG NIGLI Sbjct: 485 QFLDQVNPLAELTHKRRLSAIGPGGLKREHAKFEVRDVHHSHYGRMCPIETPEGANIGLI 544 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE 631 S+++ A+ +EYGFL+TPY +V V + I YLSA EE Y IA A++ + E+G VE Sbjct: 545 TSMAILAKVDEYGFLKTPYYRVKHAKVDLNNIVYLSADEEELYRIAPASAEIGEDGSLVE 604 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 + + R G+ SLF +D+++Y+ V+ +Q+ SV A+LIPFLEHDDANRALMG+NMQRQAVP Sbjct: 605 EYIEARYLGKVSLFHKDEIEYISVTPKQIASVSAALIPFLEHDDANRALMGSNMQRQAVP 664 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE-----MYPGEA 746 LR P VGTG+E A DSG +AK G+V YVD +IVI ++E E Sbjct: 665 LLRPQAPFVGTGVEWLAARDSGYLIMAKHKGIVDYVDGRKIVITRLDEENNVLKDSNDEP 724 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 D Y L KY RSNQ+ CINQ+P V++G+ V +G +ADGPS D+GELALG+N+ + F+P Sbjct: 725 LKDEYTLLKYVRSNQDMCINQVPIVNVGDVVTKGQAIADGPSMDMGELALGRNIFIGFLP 784 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 W GYNFED+I+VS+ +++ D FT+IHI+ + DT+LGPEEITADIPNV + L LD Sbjct: 785 WEGYNFEDAIVVSQELLENDAFTSIHIEVFETKAMDTQLGPEEITADIPNVKKELLRNLD 844 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 E GIV IG+ V+ GDILVGKVTP+GE+ TPEEKL++++FG+K D+KDSSL VP+G+ G Sbjct: 845 EEGIVKIGSYVSSGDILVGKVTPRGESDTTPEEKLIKSVFGDKGRDIKDSSLTVPHGIEG 904 Query: 927 TVIDVQVFTRDGVE-KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 VIDVQ+F R + + + ++ + K + G I +L + Sbjct: 905 RVIDVQIFDRKDIPSLEIGVNKYVKVFIATKKTLQVGDKLAGRHGNKGVISTILNKEDMP 964 Query: 986 AEKLDKLPRDRWL 998 D P L Sbjct: 965 F-LPDGTPLQMLL 976 >UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Tax=Embryophyta RepID=RPOB_GNEPA Length = 1108 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 359/1175 (30%), Positives = 558/1175 (47%), Gaps = 150/1175 (12%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 ++F FD + + + K + L ++++ + FF + + + +P Sbjct: 48 VEFLFDKNYKI-IEPSIKEKDAVY---QRLTFSSKLFVPAFFIYWNKIKKKKIIYLGEIP 103 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 L +F I N +V V + R + K + + G + + Sbjct: 104 --LMNNNGTFLINGNYRVVVNQLIRSPGIYYSLERKRTGNIYTSTLISDCGGRLKFEIDI 161 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRI--ETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + + +S+ + + I T + + I + + Sbjct: 162 KQNIWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLKHKLSRKKG 221 Query: 362 ALV----EIYRMMRPGEPPTREAAESLFENLF--FSEDRYDLSAVGRMKFNRSLLREEIE 415 A+ E+ + E+ F F R L +GR N+ L E + Sbjct: 222 AIFTFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNLNKKLNLEIPD 281 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 L D++ ++ LI + G G VD+IDHL NRR SV ++ + + + L RV+ + Sbjct: 282 NEIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVLI 341 Query: 476 KERL-------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 ++ + + ++P+ + + I+ +K FFG LSQF++Q N L+EI H R Sbjct: 342 QKTMQTIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLHPLSQFLEQTNSLAEILHAR 401 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 ++S LGPGGLT A F RD+HP++YGR CPI TPEG N GLI SL++ A+ N +GFLE Sbjct: 402 KVSFLGPGGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISARIN-FGFLE 460 Query: 589 TPYRKVTDG-VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV-TCRSKGESSLFS 646 +P+ V +I YLS E+ Y IA N L + E + E + Sbjct: 461 SPFYNVAKKYQKAKKIVYLSPSEDVYYRIALGN-CLSVDQKIPEKKNTPTQYHQEFLSIA 519 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 +Q+ + Q S+G SLIPFLEH+DA RALMG+NMQRQAVP+++ +K +VGTG+E Sbjct: 520 WEQIHFRCFLPLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEG 579 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 VA+DSG A++ + G +QY DA+ IV + + L Y RSN NT ++ Sbjct: 580 QVALDSGALAISTQEGRIQYSDAATIVSVL--------KGNTTQTELQIYQRSNSNTLMH 631 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q S + V +G +LADG + GE+ LG+N+ VA+MPW GYNFED+IL+SE ++ +D Sbjct: 632 QKTHASQAKYVRKGQILADGAAMLGGEICLGKNILVAYMPWQGYNFEDAILISECLIYKD 691 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 FT+ HI + E++T +IP + +L LD++G+V +G+ V GD+LVGK Sbjct: 692 IFTSFHITRYETTICTAE--CEKMTREIPRLATYSLRHLDKNGLVRVGSWVQPGDVLVGK 749 Query: 887 VTPKGETQLT--PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 + P+ + PE +LL+ +F +K++ LR G VIDV KD Sbjct: 750 LRPRSSEDFSRFPELRLLQDLFCTSP--IKETCLRA--NGKGRVIDVNWSKLQAFCKDD- 804 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 +E+ +D+ +E Sbjct: 805 ---LEKGHQDDDTEDIYDEA---------------------------------------- 821 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 E+ ++ QL E ++ R+IQ GD Sbjct: 822 EDALEKVYQLNNYNLSSDSEKVHVYLLEK------------------------RKIQVGD 857 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K+AGRHGNKG++S + +DMP+ ++G +D+VLNPL VPSRMN+GQI E LG+A + Sbjct: 858 KVAGRHGNKGIVSIVLSRQDMPFLQSGISLDMVLNPLSVPSRMNVGQIFECLLGLAG-TM 916 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 ++ + + A + Sbjct: 917 NKHYRIPPFDERYEQEASRKLVFYELYKASEQTANP------------------------ 952 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 + +L G+ +++DGRTGE FE+PVT G Y+LKL H V+DKMH Sbjct: 953 ---------------WIFELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKLIHQVNDKMH 997 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARSTG+Y+ +TQQP+ GK++ GGQR GEMEVWALE++G AY L+EMLTVK+D + R K+ Sbjct: 998 ARSTGNYARITQQPVQGKSKGGGQRLGEMEVWALESFGVAYVLREMLTVKADHIRARKKI 1057 Query: 1305 YKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINIE 1338 ++I+DG+ + ESF VL KE+ SL + + Sbjct: 1058 LRSILDGHSVPKADSATESFRVLSKELNSLALELN 1092 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 84/407 (20%), Positives = 157/407 (38%), Gaps = 36/407 (8%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY-VSY 73 F ++ ++ +P IQL+ F +FIE D L F I + E + +Y Sbjct: 3 FDEKKEMFTIPEFGQIQLEGFCRFIEYD------LLDKFVKFPKIANTQKEVEFLFDKNY 56 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 ++ EP ++ + +T+S+ L V + + + + + Y+GEIPLM +N Sbjct: 57 KIIEPSIKEKDAVYQRLTFSSKLFVPAFFIYWNKIKKKKII--------YLGEIPLMNNN 108 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GTF+ING RV+V+QL RSPG+++ ++ + +Y + +I G L FE D K N Sbjct: 109 GTFLINGNYRVVVNQLIRSPGIYYSLERKR----TGNIYTSTLISDCGGRLKFEIDIKQN 164 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE----IRDNKLQMELVPER---- 245 +++RI R++ + + A+ E+IL + FE I + KL+ +L ++ Sbjct: 165 IWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLKHKLSRKKGAIF 224 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 E + N V+ E + KL + + K + + D Sbjct: 225 TFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNL-NKKLNLEIPD-- 281 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 E+ L++ G ++ + +++ L+ + V Sbjct: 282 -NEIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVL 340 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 I + M T E + +S Sbjct: 341 IQKTM-----QTIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLH 382 >UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Phytoplasma RepID=RPOB_PHYAS Length = 1240 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 366/1037 (35%), Positives = 562/1037 (54%), Gaps = 85/1037 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F++ G+E + PI+SY+G+ + Sbjct: 10 KKVERRNYSKIIYDVDLPNLIEIQNKSFNWFLKD------GIEELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + P + V+E + + +Y L VK L + K+ V + E+ Sbjct: 64 IYFGECYSTGPKYSVEESKTKDASYVIQLFVKATL-------ENTLTGETKKSSVLLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PL+TD GTF+ING ERV VSQ+ RS K LY+ ++IP RG+W+++E Sbjct: 117 PLITDTGTFIINGKERVAVSQIVRS--SSVYYSSTFDVKLNKNLYSGQVIPARGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF---------EIRDNKLQ 238 K+ L+V++DR +K+P + + AL + +I++ F K ++ Sbjct: 175 EGSKEILYVKLDRSKKIPLSNFIYALGFNNREIIEKVFGKSPLLNSSFVKEEDMDTGNAL 234 Query: 239 MELVPERLRGETASFDIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +EL + +GE D + +++ +K +T + K L Y+ Sbjct: 235 IELYSKIRQGEKVPVDTARDFIRKRLFDQKKYDLTTVGRYKFNKKLDVLARAEKTYLV-- 292 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE---TLR 352 D+++ T E+I + L+ D + L ++ H ++ LF + E T + Sbjct: 293 ---HDFVNLETKEIILPKHTFLTKDKIEILRKNRHFLLQELFDAQHNLENETDEEILTYK 349 Query: 353 VDPTNDRLSALV--------------------EIYRMMRPGEPPTREAAESLFEN----- 387 DP + L E+ + +R F Sbjct: 350 KDPQSRELYIKTNILNFRTGEIIFPKDTLVTDEVIKRLRKSIQLLDGKVIEFFLRSKDVY 409 Query: 388 --------LFFSEDRYDLSAVGRMKFNRSL---LREEIEGSGILSKDDIIDVMKKLIDIR 436 +F LS + + E ++ DII + +++ Sbjct: 410 QKDLERTGVFNEILEVYLSKDEHDNLQHKVQIVGNNQKETKKHITLSDIIASISYYLNLY 469 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 G G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S+ + P +++N Sbjct: 470 EGIGNVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKHIKDMISVSKFSEVGPGELVNFG 529 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 ++ +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDVH +HYG Sbjct: 530 FLNGVIKTFFANSRLSQFMDQINPLAELTQKRRVSALGVGGINRDRAGVEVRDVHNSHYG 589 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD----GVVTDEIHYLSAIEEG 612 R+CPIETPEGP+IGLI SL++YA+ ++YGF++TP+ KV V+++I YL+A +E Sbjct: 590 RLCPIETPEGPSIGLIASLAIYAKVDDYGFIQTPFFKVFVQNGASYVSNQIEYLTADQEK 649 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 +IA + L+ + F +D V R GE ++ ++QV Y D+S +Q+VS+ + IPFLE Sbjct: 650 EEIIASSGYELNSDATFQKDKVIARKNGEIGIYPKEQVTYADISPKQIVSIATASIPFLE 709 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 H+D++RALMG+NMQRQAVP L + P+VGTG+E A DSG +A + G+V YVDA +I Sbjct: 710 HNDSSRALMGSNMQRQAVPLLVTESPIVGTGIEYRAAKDSGSLIIASQPGIVTYVDAKKI 769 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 V E Y LT + +SNQ+T I Q P VSLG+ +++GD+L DGPST+ G Sbjct: 770 VT-------SDQEGNKKEYQLTTFEKSNQDTLILQKPIVSLGDNIQKGDILVDGPSTNQG 822 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP--EEI 850 ELALG+N+ VAFM W GYN+ED+I++SE +V+ D +T++HI + + +R+ K G EEI Sbjct: 823 ELALGRNILVAFMTWEGYNYEDAIIISEELVKNDVYTSVHINKYSVQTRELKKGSGKEEI 882 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 T ++PNVG A+ LDE GI+ G+EV GDILVGK+TP+G TP+EKL++ + GEKA Sbjct: 883 TREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNVDPTPQEKLIQIVIGEKA 942 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 + KDSSLRVP G G V VQ F+R +G E + + + +K + Sbjct: 943 REYKDSSLRVPYGEGGIVQSVQYFSRKNGDILPPGVNENIRVFIAKKRKISEGDKMAGRH 1002 Query: 970 GLFSRIRAVLVAGGVEA 986 G I +L + Sbjct: 1003 GNKGVISRILPKEDLPF 1019 >UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax=Bacteria RepID=RPOB_ROSS1 Length = 1229 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 393/1182 (33%), Positives = 565/1182 (47%), Gaps = 182/1182 (15%) Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 E++++++ + P L E +F I +V V + R + ++ + + Sbjct: 123 ELKESEIFLGDFP--LMTENGTFVINGAERVVVSQLIRSPGVYFKEEKDPTSGRSLHSAK 180 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS---------------------- 328 I + ++ + + + + + L Sbjct: 181 LIPSRGAWLEFETNKRDVISVKVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQR 240 Query: 329 -GHKRIETLFTN-DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFE 386 + I LF + + YI TL DP AL+E+Y+ +RPG+PPT + A +L E Sbjct: 241 GRDEEILELFAHLETGDHQYIKATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIE 300 Query: 387 NLFFSEDRYDLSAVGRMKFNRSLLREEIE----------GSGILSKDDIIDVMKKLIDIR 436 L F+ RYDLS VGR K N++L ++ +L DDI +++++I + Sbjct: 301 ALLFNPRRYDLSRVGRYKLNKNLWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLN 360 Query: 437 NGK--GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 NG DDIDHLGNRR+R+VGE+ + QFRVGL+R+ER +KER+SL D +T P ++N Sbjct: 361 NGTPGLRADDIDHLGNRRVRTVGELIQQQFRVGLLRMERVIKERMSLQDPETATPNALVN 420 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 +P+ AA++EFFG +QLSQFMDQ NPL+E+THKRR+SALGPGGL+R+RAGFEVRDVH +H Sbjct: 421 IRPVVAAMREFFGGAQLSQFMDQTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHHSH 480 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CP+ETPEGPNIGLI ++S YA+ NE GFLETPYRKV Sbjct: 481 YGRICPVETPEGPNIGLIGTMSTYARVNEMGFLETPYRKVYRE----------------- 523 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 S + +G + D+ R GE +VD V + ++ D Sbjct: 524 --VPNASEWERQGLLLRDVRDLR-TGELIAVRGTRVDAAVARRIAVALLRGQILREDVVD 580 Query: 675 DANRALMGANMQRQAV-----------------PTLRADKPLVGTGMERAVAVDSGVTAV 717 ++ Q P + + + E + + Sbjct: 581 PTTGEVIAHAGQEVNRALAERIVETPLKIIKIRPVVSQEVDYLSADEEDRFVIVQANAPL 640 Query: 718 AKRG----GVVQYVDASRI----VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 + G V A + +V+ ++ P + L + + + M Sbjct: 641 DEHNRFLEGTVSVRYAGDFDDVPIERVDYMDVSPKQVVSVSTALIPFLEHD-DANRALMG 699 Query: 770 --CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P+ R D G + + VA D +++S Sbjct: 700 SNMQRQAVPLLRPDAPIVGTGMEYVAARDSGQVVVAKA--------DGVVLSATA----- 746 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 E+ + D G E + + +++ IV G V GDI+ Sbjct: 747 ------DEIVILEDD---GNERSYRLRKFMRSNQDTCINQRPIVSRGQRVRKGDIIAD-S 796 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 + +L + +L A + + +D+ L VS ++ +FT +EK + Sbjct: 797 SSTDNGELALGQNVLVAFMPWEGGNFEDAIL-----VSERLVREDIFTSIHIEKYEVEAR 851 Query: 948 IEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 ++ ++ +D+ ++ I+ G + +LV + D +R Sbjct: 852 DTKLGPEEITRDIPNVGQDSLRNLDDRGIIYIGAEVQPNDILVGKITPKGETDLTAEERL 911 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 L ++ ++ + L + K+ + + +L GV + V V L K Sbjct: 912 LRAIFGEKAREVKDSSLRVPNGVRGKVIDVKVFTRDDDV----ELPVGVNQRVDVLLCQK 967 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R+I GDKMAGRHGNKGV+S+I PIEDMP+ +GTPVDI+LNP+GVPSRMNIGQI Sbjct: 968 RKISAGDKMAGRHGNKGVVSRILPIEDMPFLPDGTPVDIILNPIGVPSRMNIGQI----- 1022 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 + L R Sbjct: 1023 ----------LETHLGWAA---------------------------------------AR 1033 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 G +ATPVFDGA E EIKE LK DLP G+I LYDGRTGE F+RPVTVGY+YM+KL H Sbjct: 1034 LGYRVATPVFDGATETEIKEWLKRADLPPDGKITLYDGRTGEAFDRPVTVGYIYMMKLAH 1093 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 LV+DK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD Sbjct: 1094 LVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1153 Query: 1298 VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 V GR K Y+ IV G E G+PESF VL+KE++SLG+++E+ Sbjct: 1154 VVGRVKTYEAIVKGEPIQEAGVPESFKVLIKELQSLGLSVEV 1195 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 112/398 (28%), Positives = 184/398 (46%), Gaps = 60/398 (15%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NS 66 K R F + +++P L+ QL+SF+ F + GL F + PI ++G N Sbjct: 27 GKIERYSFARISNAIELPKLIETQLNSFEWF------RKEGLRELFEEISPITDFTGKNM 80 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 EL+++ Y GEP ++ EC+ RG+TYSAP+RV ++L I + ++KE E+++G+ Sbjct: 81 ELRFLDYHFGEPRYNEHECRERGITYSAPIRVNVQLRIL-------STGELKESEIFLGD 133 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 PLMT+NGTFVING ERV+VSQL RSPGV+F +K T SG+ L++A++IP RG+WL+F Sbjct: 134 FPLMTENGTFVINGAERVVVSQLIRSPGVYFKEEKDPT--SGRSLHSAKLIPSRGAWLEF 191 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRA-LNY--------------------TTEQILDLFF 225 E + +D + V++DR+RK+P TI+LRA L + E+IL+LF Sbjct: 192 ETNKRDVISVKVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQRGRDEEILELFA 251 Query: 226 EKVIFE-------------IRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRIT 270 + + +EL G+ + D N + R Sbjct: 252 HLETGDHQYIKATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIEALLFNPRRYDL 311 Query: 271 ARHIRQLEKDDV-------KLIEVPVEYIAGKVVAKDYIDESTGELICAANME-LSLDLL 322 +R R ++ ++ + ++ D + L D + Sbjct: 312 SRVGRYKLNKNLWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLNNGTPGLRADDI 371 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 L + + L G E + + + + Sbjct: 372 DHLGNRRVRTVGELIQQQFRVGLLRMERVIKERMSLQD 409 >UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacteria RepID=A7BQQ8_9GAMM Length = 1118 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 480/723 (66%), Positives = 577/723 (79%), Gaps = 18/723 (2%) Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 +R+D T L A +EIYRMMRPGEPPT EAAESLF NLFFSE+RYDLSAVGRMKFNR + Sbjct: 1 MRIDSTTTTLEAQIEIYRMMRPGEPPTPEAAESLFNNLFFSEERYDLSAVGRMKFNRRIG 60 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 R+EI G GIL+ DDI+DV++ LI+I NG G VDDIDHLGNRRIRSVGEM ENQFR+GLVR Sbjct: 61 RDEITGPGILTVDDILDVLRTLINIPNGIGGVDDIDHLGNRRIRSVGEMTENQFRIGLVR 120 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 VERAVKERLS+ +++ ++PQ++INAKP+SA+++EFFGSSQLSQFMDQNNPLSE+THKRRI Sbjct: 121 VERAVKERLSVAEIENVVPQELINAKPVSASIREFFGSSQLSQFMDQNNPLSEVTHKRRI 180 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+VYA+TN+YGFLETP Sbjct: 181 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETP 240 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 R+V DG VTD++ YLSAIEEG +VIAQAN+NLDE G+F +D+V R + E ++ S+D+V Sbjct: 241 CRRVEDGRVTDKVEYLSAIEEGGFVIAQANANLDENGYFKDDMVAARHENEFTVISKDKV 300 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +YMDVS +Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRA KPLVGTGMER VA+ Sbjct: 301 NYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAQKPLVGTGMERIVAI 360 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG--------------EAGIDIYNLTKY 756 DSGVT VA+RGG++ VDA+RIV+++N+DE+ +G+DIYNLTKY Sbjct: 361 DSGVTVVAERGGIIDSVDAARIVVRINDDEVLKEGEDNSITPKFGTLLSSGVDIYNLTKY 420 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQNTCINQ P V + ++RGDVLADGPSTDLGELALGQN+ VAFMPWNGYNFEDSI Sbjct: 421 VRSNQNTCINQKPLVKPDDLIKRGDVLADGPSTDLGELALGQNLFVAFMPWNGYNFEDSI 480 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 L+SERVV+E+RFT+IHI EL+C++RDTKLG EEITADIPNV E+AL LDE+GI+ IGA+ Sbjct: 481 LISERVVEEERFTSIHIVELSCLARDTKLGAEEITADIPNVSESALKNLDEAGIISIGAQ 540 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLRVP+G GTVIDVQVFTR Sbjct: 541 VMPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTMGTVIDVQVFTR 600 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 DGV+K RA IE+ +L + KKDL + L+ILE ++ R+ +LV V + Sbjct: 601 DGVDKGARAGRIEQAELNRVKKDLQDTLRILEHDVYLRVEKLLVGNKVTNSSNGWEGWEG 660 Query: 997 WLELGLTDEEKQ-NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 +L + ++ ++ E E + + + + I + L K K L Sbjct: 661 VKKLLVGNKVTNSSKDEDGIETNTIITSRSD---DIETNTIITSEILGEPSDKWFKFSLE 717 Query: 1056 VKR 1058 K+ Sbjct: 718 DKK 720 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 237/372 (63%), Positives = 287/372 (77%), Gaps = 4/372 (1%) Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAK 1032 + +A L + + L LPR + EL + DE+ Q Q+E A+Q + + + E K Sbjct: 744 EKSQAQLESFKPALKALHDLPRTKLFELRVEDEKIQAQIESFAQQLKDQRQRADALYEEK 803 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 R+K+ GD+LAPGVLK+VKVYLA+KR IQPGDKMAGRHGNKGV+S I P+EDMPY ++G Sbjct: 804 RQKLISGDELAPGVLKMVKVYLAIKRTIQPGDKMAGRHGNKGVVSMIVPVEDMPYTKDGR 863 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL- 1151 PVD+VLNPLGVPSRMNIGQ+LETHLG AAK +G++I LK + + + I+ Sbjct: 864 PVDLVLNPLGVPSRMNIGQVLETHLGWAAKALGEQIEQKLKIINKSKIIAQSIEELRSYL 923 Query: 1152 ---GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 + DL+ ++ E++ LA+NL G+P+AT VFDGA E+EIK +L+L LPT+G Sbjct: 924 TKIYNVSGKPEDLTVLNNAEILELAKNLSDGVPMATQVFDGASESEIKMMLELAGLPTNG 983 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 Q LYDGRTGE F R +TVGYMYMLKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQ Sbjct: 984 QTTLYDGRTGEAFSRQITVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ 1043 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 RFGEMEVWALEAYGA+YTLQEMLTVKSDDVNGRT+MYKNIVDG+H+ME GMPESFNVL+K Sbjct: 1044 RFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTQMYKNIVDGDHRMEAGMPESFNVLVK 1103 Query: 1329 EIRSLGINIELE 1340 EIRSLGI+IELE Sbjct: 1104 EIRSLGIDIELE 1115 >UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Tax=Bacteria RepID=RPOB_DEHSB Length = 1273 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 381/1229 (31%), Positives = 594/1229 (48%), Gaps = 156/1229 (12%) Query: 181 GSWLDFEFDPKDNLFVRI--------DRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 G+ L+ EF + R+ D+ +P + R + TT +I + F Sbjct: 62 GNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIKEPF-------- 113 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 L +P L +F +V V + R + + I Sbjct: 114 ---DLFFGDIP--LMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHTNLI 168 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL-----FTNDLDHGPYI 347 + ++ + + + + + L G+ + ++ YI Sbjct: 169 PSRGAWLEFETSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYI 228 Query: 348 SETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 ++ DP D +SAL++IY +RPG+PP + A L +FF YDL VGR K N Sbjct: 229 QSSIDRDPLIKDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVN 288 Query: 407 RSLLREEIE--GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 R L E + L+++DI+ +++++I + NG+ DDIDHLGNRRIR+VGE+ +NQF Sbjct: 289 RRLELPSREVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQF 348 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 R+GLVR+ER +ER+S+ +L+ + P ++N +P+ +AVKEFFG SQLSQFMDQ NPL+EI Sbjct: 349 RIGLVRLERVARERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPLAEI 408 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 T+KRR+SA+GPGGL+RERAGF+VRDVH +HYGR+CPIETPEGPNIGLI SL+ Y++ N Y Sbjct: 409 TNKRRLSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRY 468 Query: 585 GFLETPYRKVTDGVVTDE-----IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 GF+ETPYRKV + ++ + + I E V+A A S + E+ Sbjct: 469 GFVETPYRKVYSKLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISEDS------------ 516 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 + S+ + V + ++ D+ +R ++ R D + Sbjct: 517 --FKIISKLPECDISVMPFVSAE-----VKYMPADEEDRYIIAQANTRLDEKGYFLDDRI 569 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 ER V + A+ ++ + D+ G Sbjct: 570 EARSAERYVVEPPDKIDYMDVSPKQIFSVAASLIPFLEHDDANRALMGA----------- 618 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 N +P + P+ + + G++ ++ VA S + S Sbjct: 619 --NMQRQAVPLLRAEAPMVATG-MEREAARYSGQVIFAKHAGVA-----------SSVTS 664 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 E+++ T G + V + +++ I+ G ++ Sbjct: 665 EKIIIR-----------------TAEGGHDEYLLKKFVRTNQGTCINQHAIINKGQKIAA 707 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 G +L + +L + + A + + +D+ + +S ++ FT + Sbjct: 708 GQVLADSSATEN-GELALGQNCVVAFMSWQGFNYEDAII-----LSERLVREDAFTSIHI 761 Query: 940 EKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKL 989 K + ++ +++ +D+ +E I+ G +LV + Sbjct: 762 TKHELEARDTKLGVEEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGET 821 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 + ++ L ++ ++ + L + E ++ ++ GDDL V K Sbjct: 822 ELSAEEKLLRAIFGEKAREVKDTSLRMPHGEWGKVINVRIFSR----DSGDDLPARVNKW 877 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V+V++A KR++ GDK+AGRHGNKGVIS I P+EDMPY +GTPVD+VLNP+GVPSRMN+ Sbjct: 878 VQVWVAQKRKVSVGDKLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNL 937 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQILETHLG A +G ++ + + + + + R++ + K S E Sbjct: 938 GQILETHLGWAGHLLGFRVATPVFDGADDTVIEDALARSW-----LSAKAGAIDMSPENK 992 Query: 1170 MRLAENLRKGMPIATPVFDG-----------AKEAEIKELLKLGDLPTS----------- 1207 A+ + I FDG AKE +K LK + S Sbjct: 993 RPSADAHKAIEWIKQQGFDGKKIFDEKHPGLAKEVSLKLWLKDMGVDASALSGAELEKKA 1052 Query: 1208 --------------GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 G+ L DGRTGE F++PVTVG MY+LKL HLV+DK+HAR+TG YSL Sbjct: 1053 YDVSSQSRLPSPIVGKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSL 1112 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 ++QQPLGGKAQFGGQRFGEMEVWA+ AYG A+ LQEMLT+KSDD+ GR K Y++IV G Sbjct: 1113 ISQQPLGGKAQFGGQRFGEMEVWAMYAYGTAHNLQEMLTIKSDDIAGRAKAYESIVKGED 1172 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++PG+PESF VL+KE++SLG+ +E+ +E Sbjct: 1173 VLQPGVPESFKVLVKELQSLGLAVEVINE 1201 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 174/366 (47%), Gaps = 37/366 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN-SEL 68 IRK + + P+V++VP L+ +QL SF F E+ GL + PI+ + GN EL Sbjct: 14 VIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEE------GLRELIEEISPIKDFVGNRLEL 67 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ-EVYMGEI 127 +++ Y EP EC R TYS PL VK RL++ T +IKE +++ G+I Sbjct: 68 EFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIV-------KTTGEIKEPFDLFFGDI 120 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+ +GTERV+VSQL RSPGV+F ++G+ L + +IP RG+WL+FE Sbjct: 121 PLMTALGTFITSGTERVVVSQLLRSPGVYF--TISDDPATGRPLCHTNLIPSRGAWLEFE 178 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLF---------------FEKVIFE 231 +D + V+ID RRK+P + +LRA+ Y+ + IL+LF ++ Sbjct: 179 TSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLI 238 Query: 232 IRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +++ G+ + D +++ + + R ++L Sbjct: 239 KDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELP--SR 296 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 E + + ++ I +I N + + D + L + + L N G E Sbjct: 297 EVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLE 356 Query: 350 TLRVDP 355 + + Sbjct: 357 RVARER 362 >UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacteria (class) RepID=C7M2W5_ACIFD Length = 1181 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 384/862 (44%), Positives = 503/862 (58%), Gaps = 58/862 (6%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIIL-RALNYTTEQILDL-FFEKVIFEIRDNKLQMEL 241 L+ E+DP D + K A + + Y + F + +EI+ + M Sbjct: 60 LELEYDPSDPDLAPV---PKFSAEECREKDMTYAGPIFVRARFLNRQTYEIKQQIVFMGD 116 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 P L + +F I +V V + R + V + ++ Sbjct: 117 FP--LMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQHT---VVTATINPYRGEWLEF 171 Query: 302 I-------DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 D + G + +L +E L + P ++ D Sbjct: 172 DVEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWAK---ED 228 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE- 413 + R AL+E++R +RPGEP EAA FE FF RYDL+ VGR K ++ L E Sbjct: 229 HSQTRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSAEIE 288 Query: 414 -------------IEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGE 458 E +LS+ DII ++ + G+ DD DH NRR+RSVGE Sbjct: 289 RVEEILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRSVGE 348 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQ ++GL R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFF +SQLSQFMDQN Sbjct: 349 LIQNQLKIGLSRLERLVRERMTTQDVEAITPQSLINIRPVVAAIKEFFSTSQLSQFMDQN 408 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLS + HKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ Y Sbjct: 409 NPLSGLAHKRRLSALGPGGLSRERAGFEVRDVHSSHYGRMCPIETPEGPNIGLIGALASY 468 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ N YGF+ETPYR+V DG VTDE+ YL+A EE +YVIAQAN+ LD EG FVE V R Sbjct: 469 ARLNRYGFIETPYRRVVDGKVTDEVVYLTADEEEDYVIAQANAKLDAEGRFVEPKVLVRR 528 Query: 639 K------------------GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 E L + D+VD MDVS QVVSV SLIPF+EHDDANRAL Sbjct: 529 GPQGAVVRVGAMAVSYGATSEVELATPDEVDLMDVSPAQVVSVSTSLIPFVEHDDANRAL 588 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 MGANMQ+QAVP L + P VGTG+E +D+G VA+ GVV V + I + ++ Sbjct: 589 MGANMQKQAVPLLVPEAPFVGTGVEARAGLDAGDVLVAEGPGVVSEVTGASIAVTYDDSV 648 Query: 741 MYPGEAGIDI--YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 + Y LTK+ RSNQNTC NQ P V+ G+ VE GDVLADGP+T GELALG+ Sbjct: 649 TDDAGRPLGTRRYWLTKFQRSNQNTCWNQRPTVATGDRVELGDVLADGPATMHGELALGK 708 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 N+ VAFMPW GYNFED+I++SER+V++D +++HI+E +RDTKLG EEIT DIPN+ Sbjct: 709 NLLVAFMPWEGYNFEDAIIISERLVRDDVLSSLHIEEFETDARDTKLGAEEITRDIPNLS 768 Query: 859 EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 E AL+ LDE GIV IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEK+ +V+D+SL Sbjct: 769 EEALADLDERGIVRIGAEVGPGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSL 828 Query: 919 RVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 RVP+G G VIDV+VFTR+ E E+ + + Q +K + G I Sbjct: 829 RVPHGEYGKVIDVKVFTREDATELPPGVNELVRVYVAQHRKIQVGDKLAGRHGNKGVISR 888 Query: 978 VLVAGGVEAEKLDKLPRDRWLE 999 +L + D P D L Sbjct: 889 ILPIEDMP-RLEDGTPVDIILN 909 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 190/480 (39%), Positives = 275/480 (57%), Gaps = 38/480 (7%) Query: 871 VYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V G V GD+L G T GE L LL A + + +D+ + +S ++ Sbjct: 681 VATGDRVELGDVLADGPATMHGELALGK--NLLVAFMPWEGYNFEDAII-----ISERLV 733 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVL 979 V + +E+ + ++ ++ +D+ +E I+ G +L Sbjct: 734 RDDVLSSLHIEEFETDARDTKLGAEEITRDIPNLSEEALADLDERGIVRIGAEVGPGDIL 793 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 V + + P +R L ++ ++ + L + E + K+ + Sbjct: 794 VGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGEYGKVIDVKVFTR----EDA 849 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +L PGV ++V+VY+A R+IQ GDK+AGRHGNKGVIS+I PIEDMP E+GTPVDI+LN Sbjct: 850 TELPPGVNELVRVYVAQHRKIQVGDKLAGRHGNKGVISRILPIEDMPRLEDGTPVDIILN 909 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQ+LE HLG AA+ + I ++ ++ + Sbjct: 910 PLGVPSRMNIGQVLEAHLGYAARWGWEPIGEGAREHRKTRPV------TVPARWVASPAF 963 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + + + E +++ + P ++ E L + G+ LY+GRTGE Sbjct: 964 DGAHWDESEEAGDLPTIKELLERLNP------QSRDGERL----VQPDGKAVLYNGRTGE 1013 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 +++ PV VGY+YMLKL H+VDDK+HARSTG YS++TQQPLGGKAQFGGQRFGEMEVWALE Sbjct: 1014 RYDNPVMVGYVYMLKLAHMVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALE 1073 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AYGAAY LQE+LT+KSDDV GR K+Y+ IV G++ EPG+PESF VL+KE++SL +N+E+ Sbjct: 1074 AYGAAYALQELLTIKSDDVVGRVKVYEAIVKGDNIPEPGIPESFKVLIKEMQSLCLNVEV 1133 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 105/388 (27%), Positives = 157/388 (40%), Gaps = 51/388 (13%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 + R F VL +P L+++Q DSF+ F+ GL AFR + PI+ YSG Sbjct: 4 RHRPPERFSFASARNVLPLPDLIAVQRDSFRWFL------NEGLAEAFRDISPIEDYSGQ 57 Query: 66 SELQYV----SYRLGE-PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 L+ L P F +EC+ + +TY+ P+ V+ R + +IK+Q Sbjct: 58 LALELEYDPSDPDLAPVPKFSAEECREKDMTYAGPIFVRARFLN-------RQTYEIKQQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 V+MG+ PLMTD GTF+INGTERV+VSQL RSPGV F + + + A I PYR Sbjct: 111 IVFMGDFPLMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQ-----HTVVTATINPYR 165 Query: 181 GSWLDFEFD----PKDNLFVRIDRRRKLPATIILRALNYTTE----------QILDLFFE 226 G WL+F+ + N R+ R+R+L +LRA L+ + Sbjct: 166 GEWLEFDVEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWA 225 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKL 284 K + ME+ GE + + + + R R R + Sbjct: 226 KEDHSQTRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSA 285 Query: 285 IEVPVEYIAGKVVAKDYIDE---STGELICAANMELS---------LDLLAKLSQSGHKR 332 VE I G + + S ++I A+ L D S + Sbjct: 286 EIERVEEILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRS 345 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRL 360 + L N L G E L + + Sbjct: 346 VGELIQNQLKIGLSRLERLVRERMTTQD 373 >UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax=Cyanidioschyzon merolae RepID=RPOB_CYAME Length = 1036 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 343/853 (40%), Positives = 473/853 (55%), Gaps = 29/853 (3%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 + ++R + +P L E A+F I +V V + R + + L Sbjct: 75 LWNHQTGDVRQQMIYFGEIP--LMTEDATFIINGAERVVVNQIVRSPGVYFQALWDKQHV 132 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 ++A + Y + L + + L+ L G E L + Sbjct: 133 R-TFEATFMANRGAWIKYELDKQKLLWVRLDKNRKMPLVIFLQALGLNLQE--IKPHLTN 189 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + N+ +ALVE Y+ MRPGEP T +A+ L FF +YDLS VGR Sbjct: 190 REVFERSWENHAVNNTEAALVEFYKKMRPGEPATVHSAKQLLYARFFDPKKYDLSEVGRY 249 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K N+ L + IL+ D++ + LI + + VDDIDHL NRR++ VGE+ +NQ Sbjct: 250 KLNQKLHLDIPLSVHILTTSDLLAGLDYLIQLCLDRARVDDIDHLANRRLKCVGELLQNQ 309 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 R+GL R+E+ ++E++++G+ L P ++N KP+++A++EFF SSQLSQFMDQ NPL+E Sbjct: 310 VRIGLSRLEKLLREKMTIGE--KLQPSSLLNPKPLTSAIREFFASSQLSQFMDQINPLAE 367 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 +THKRRISALG GGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+++A+ N Sbjct: 368 LTHKRRISALGAGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLAIFARVNR 427 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 YGF+ETPY V G V I YL+A E NY +A A+ D EG +V R + E + Sbjct: 428 YGFIETPYYPVKKGQVQKSIVYLTADVEDNYRLAPADVKYDREGQICSPIVAVRYRQEWT 487 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 VDYM +S Q +S LIPFLEHDDANRALMG+NMQRQAVP +RA KP V TG Sbjct: 488 TCDASHVDYMAISPIQFISAATCLIPFLEHDDANRALMGSNMQRQAVPLIRASKPYVSTG 547 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 E+ + +K G+V+ V A+ I I+ G Y L KY +SNQ+T Sbjct: 548 QEKWMVQG----VFSKADGIVRSVQATSIRIQH--------ARGPVDYALLKYQKSNQDT 595 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 CI+ P V +GE V +G ++A + D GELALGQN+ +A+MPW GYNFED+ ++SER+V Sbjct: 596 CIDYRPLVWVGEHVVKGQLIAQSAAMDSGELALGQNVLIAYMPWEGYNFEDAFVISERLV 655 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 ED +T+IHI++ +R TKLG E+IT IPNVGE AL +LDE GI+ +G+ V G IL Sbjct: 656 YEDVYTSIHIEKYETDARQTKLGAEQITRQIPNVGEHALRQLDEHGIISVGSWVEAGSIL 715 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKD 942 VGK+TPKGE+ PE KLLRAIFGEK VKDSSLR+PNG G VI V++ +RD G E Sbjct: 716 VGKITPKGESDQPPEGKLLRAIFGEKNQHVKDSSLRMPNGSRGRVIHVRILSRDQGDELP 775 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + + + + G + +L + LP +++ L Sbjct: 776 AGVNISVRVSVAVKRVIQVGDKMAGRHGNKGIVARILPRCDMPY-----LPDGTPVDVIL 830 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 +++ Q E KR KI D++ + V+ +KR Sbjct: 831 NPLGVPSRMN--VGQLFEALLGLAAHRLRKRIKIVPFDEMYHKEASRIFVHQQLKRAALS 888 Query: 1063 GDK--MAGRHGNK 1073 GR G K Sbjct: 889 AQTILYDGRSGEK 901 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 95/436 (21%), Positives = 180/436 (41%), Gaps = 49/436 (11%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 + L+++Q +S+ F+ + L+ F + PI Y+G EL + L P Sbjct: 1 MRDLIAVQRNSYYTFLTKS------LKEEFDKISPIVDYTGQLELHLITSKMELKPPKIT 54 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + + + +TYS + + ++L ++ D+++Q +Y GEIPLMT++ TF+ING Sbjct: 55 PVQAKRQDITYSVGMYMPVQLWNHQ-------TGDVRQQMIYFGEIPLMTEDATFIINGA 107 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERV+V+Q+ RSPGV+F + K H + A + RG+W+ +E D + L+VR+D+ Sbjct: 108 ERVVVNQIVRSPGVYFQALWDKQHV---RTFEATFMANRGAWIKYELDKQKLLWVRLDKN 164 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIR--------DNKLQMELVPERLRGETASF 253 RK+P I L+AL ++I + +FE +E + GE A+ Sbjct: 165 RKMPLVIFLQALGLNLQEIKPHLTNREVFERSWENHAVNNTEAALVEFYKKMRPGEPATV 224 Query: 254 DIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + K ++ +L + I + V + + LI Sbjct: 225 HSAKQLLYARFFDPKKYDLSEVGRYKLNQKLHLDIPLSVHILTTSDLLAGL-----DYLI 279 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 +D + L+ K + L N + G E L + + I + Sbjct: 280 QLCLDRARVDDIDHLANRRLKCVGELLQNQVRIGLSRLEKLLREK--------MTIGEKL 331 Query: 371 RPGEP----PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 +P P A F + S+ ++ + + R + G+G L+++ Sbjct: 332 QPSSLLNPKPLTSAIREFFASSQLSQFMDQINPLAELTHKRRIS---ALGAGGLTRERAG 388 Query: 427 DVMKKLIDIRNGKGEV 442 ++ + G+ Sbjct: 389 FAVRDIHPSHYGRICP 404 >UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 Tax=Bacteria RepID=RPOB_BIFLD Length = 1187 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 350/797 (43%), Positives = 483/797 (60%), Gaps = 33/797 (4%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P L+ +F I +V V + R + + + Sbjct: 135 FENGDTGEIKSQTVFMGDFP--LQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDRTSD 192 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + L G + E Sbjct: 193 KEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEIAQA--FKD 250 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 P + + L + + ALV++YR +RP + PT EA ++L ++ +F+ RYDL+ VGR Sbjct: 251 YPLVLDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRY 310 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI---------------DHL 448 K NR L E L ++DII +K L+ + +G DH Sbjct: 311 KINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDLRVDVDDIDHF 370 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 GNRRIR VGE+ +NQ R GL R+ER V+ER++ D + + PQ +IN +P++A +KEFFG+ Sbjct: 371 GNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVNATIKEFFGT 430 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQLSQFMDQNNPLS +T+KRR+SALGPGGL+R+RA EVRDVHP+H+GR+CPIE+PEGPN Sbjct: 431 SQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMCPIESPEGPN 490 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 IGLI SL+ + + N +GF+ETPYRKV +G VTDE+ Y++A + ++VIAQAN LDE G+ Sbjct: 491 IGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQANQELDENGN 550 Query: 629 FVEDLVTCRSKGES-SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 FV+ R E VDYMDVS +Q+VS+GASLIPFLEHD+ +RALMG NMQR Sbjct: 551 FVQKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGHRALMGTNMQR 610 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 QAVP + +++PLVGTG E A DSG +++ GVV YV A I + ++ Sbjct: 611 QAVPLIESERPLVGTGSEWRAANDSGDVIKSEKDGVVTYVSADLIRVMNDD-------GT 663 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 Y L K+ RSNQ TC NQ P V GE VE G V+ADGP+ G+LALG+N+ +AFMPW Sbjct: 664 TSSYKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVMADGPAIQNGDLALGKNLLIAFMPW 723 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 NGYN+ED++++S+R+VQ+D ++IHI+E +R+TKLG EEIT D+PNVGE A++ LDE Sbjct: 724 NGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANLDE 783 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 GI+ IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEK+ +V+D+SLRVP+G +GT Sbjct: 784 RGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGT 843 Query: 928 VIDVQVFTR-----DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 VI V+ TR DG E ++ + + Q +K + G I +L Sbjct: 844 VIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRILPEE 903 Query: 983 GVEAEKLDKLPRDRWLE 999 + D P D L Sbjct: 904 DMPF-LADGTPVDIMLN 919 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 266/490 (54%), Gaps = 52/490 (10%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV+ G V G ++ + L + LL A + +D+ + +S ++ Sbjct: 686 IVHDGERVEAGSVMADGPAIQN-GDLALGKNLLIAFMPWNGYNYEDAVI-----ISQRLV 739 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVL 979 + +E+ + ++ ++ +DL +E I+ G +L Sbjct: 740 QDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANLDERGIIRIGAEVEAGDIL 799 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 V + + P +R L ++ ++ + L + E K + G Sbjct: 800 VGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGTVIGVKEITREDAEEDG 859 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L GV ++++VY+A R+I GDK++GRHGNKG IS+I P EDMP+ +GTPVDI+LN Sbjct: 860 DELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRILPEEDMPFLADGTPVDIMLN 919 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMN+GQ+LE HLG A G D+ Sbjct: 920 PLGVPSRMNLGQVLELHLGWIAH----------------------------SGWDISLDP 951 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG--------QIR 1211 +L + + AE P+ATPVFDG K +K LL G + Sbjct: 952 NLEAEWKKLIPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKAT 1011 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 L+DGRTGE + +P++VGYMYMLKL+HLVDDK+HARSTG YS++TQQPLGGKAQFGGQRFG Sbjct: 1012 LFDGRTGEPYTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG 1071 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWALEAYGAAYTL EM+T KSDDV+GR ++Y IV G++ G+PESF VLLKE++ Sbjct: 1072 EMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQ 1131 Query: 1332 SLGINIELED 1341 SL +N+E+ + Sbjct: 1132 SLSLNVEVLN 1141 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 145/311 (46%), Gaps = 35/311 (11%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLE 50 K R +FG + +DVPYLL +Q DSF I GL+ Sbjct: 24 HKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNERWKARVEEDEKNGTNTVAHTSGLD 83 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAP 110 F + PI++++ L + EP VQEC+ + TYSAPL V Sbjct: 84 EVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEKDYTYSAPLYVNAEF-------E 136 Query: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 G +IK Q V+MG+ PL T +GTF+I GTERVIVSQL RSPGV+FD + +T S K Sbjct: 137 NGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDRT--SDKE 194 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF 230 ++ A+IIP RG+WL+FE D KD VR+DR+RK A + L A+ T +I F + + Sbjct: 195 VFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEIAQAFKDYPLV 254 Query: 231 EI--------RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKD 280 ++ ++L + +T + + N Y R AR R Sbjct: 255 LDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRYKINR 314 Query: 281 DVKLIEVPVEY 291 + + + Sbjct: 315 KLGVEADFNDR 325 >UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 Tax=Bacteria RepID=RPOB_MYCCT Length = 1287 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 376/931 (40%), Positives = 562/931 (60%), Gaps = 85/931 (9%) Query: 98 VKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF 157 +++ ++ ++ + V K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG +F Sbjct: 160 IQIDIIEDKKTSLICNVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPGAYF 219 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN-------LFVRIDRRRKLPATIIL 210 + + + +G+++Y A IIP RG+WL++E D K L+V+ID+ RK AT +L Sbjct: 220 NKELNRK--TGEMIYFADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTATSLL 277 Query: 211 RALNYTTEQILDLFFEKVI-------------FEIRDNKLQMELVPERLRGETASFDIEA 257 A + + IL++F + F+I + E+ + +GETA+ + + Sbjct: 278 LAFGISKDDILNIFDNDEVLVETLQQDSIIGDFKIDWSNQVQEIYKKIRQGETATSEGAS 337 Query: 258 N--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + +K + + R K + + I KV+A+D +D + ++ A + Sbjct: 338 KFINSILFDKRKYDLTKAGRFKLKQKLSI----KNRILNKVIAEDILDANNN-VLIAKDT 392 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 E++ + + ++S+ + + ++ L P + V+ R+ + E Sbjct: 393 EVTKNNIQEISKILDQDVMSIDLKYLSDIPGNRK--------------VQKIRVYKDSEL 438 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 T + ++ DI+ + L+++ Sbjct: 439 KTDTTCL--------------------------IGLTNSSNEEFITVADILSTVSYLLNL 472 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 + GE+DDID+LGNRR+R+VGE+ +NQFR+GL R+++ VKE+L+ DL + +INA Sbjct: 473 KYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNRIDKNVKEKLATSDLYKVKTSTIINA 532 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 KP++A + EFF SQLSQFMDQ NPLSE+T+KRR++ALGPGGL+R+RAG EVRDVHP+HY Sbjct: 533 KPLTAIIGEFFNLSQLSQFMDQINPLSELTNKRRLTALGPGGLSRDRAGLEVRDVHPSHY 592 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE-IHYLSAIEEGNY 614 GR+CPIETPEGPNIGLIN+LS YA+ NEYGF+ TPYRKV +G++ ++ + YL+A +E N+ Sbjct: 593 GRICPIETPEGPNIGLINNLSTYARVNEYGFITTPYRKVINGIIQNDQVEYLTADQEKNF 652 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 +IAQ+N N DE G +++++ R G+ + +++ Y+DVS +Q+VSV S IPFLE+D Sbjct: 653 IIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIHYIDVSPKQIVSVATSGIPFLEND 712 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DANRALMGANMQRQAVP ++ + P+V TG+E A DSG VAK +V+YVD+ I Sbjct: 713 DANRALMGANMQRQAVPLIKPESPIVATGIEFEAARDSGEAIVAKEDAIVKYVDSKTI-- 770 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + GE+GI Y L+ Y RSN T + Q P V +G+ V++G+++ADGPS D GEL Sbjct: 771 ------ITDGESGIRTYILSDYERSNNGTSLTQSPIVKVGDVVKKGEIIADGPSMDQGEL 824 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 A+GQN+ VAF +NGYNFED+I++SER+V +DRFT+IHI E R+TK G EE+T +I Sbjct: 825 AIGQNVVVAFSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTREI 884 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 PN+ E A LD GIV IG EV GD+LVGKVTPKG+ QL+PE+KLL AIFGEK+ +VK Sbjct: 885 PNMSEQAKRHLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRNVK 944 Query: 915 DSSLRVPNGVSGTVIDVQVF------TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 D+SLRVPNG G V ++ F DG+E +E+ ++ + Q +K + Sbjct: 945 DNSLRVPNGGEGIVQSIKRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKMSGR 1004 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 G I +L + + D P D L Sbjct: 1005 HGNKGIISRILPIEDMPHLE-DGTPVDIILN 1034 Score = 487 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 319/1404 (22%), Positives = 546/1404 (38%), Gaps = 243/1404 (17%) Query: 1 MVYSYTE--KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 M Y + + R+D+ K L +P L+ IQ ++F+ F G++ FP Sbjct: 1 MAYKIRKINRNVERRDYTKVSMNLSLPNLIGIQTETFEWF------KTKGIQEVLDEFFP 54 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I S+ G+S L ++ EP V++ + Y AP+ L+L + + E + + Sbjct: 55 ILSFDGSSVLTLENWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTEEIQKEFDGVD 114 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 +++ +V+ L G + K S + I Sbjct: 115 QEDTL-------------------KVLTHWLEEKTG--NGNITFKQQSQNSYFFEITIKK 153 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 + D + + I +K + + ++ Sbjct: 154 S---------EKPDLIQIDIIEDKKTSLIC-------------------NVSIYKSGEVF 185 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + P L E +F I + KV V + R + + + + I + Sbjct: 186 LGDFP--LMTEAGTFIINGSQKVIVSQLVRSPGAYFNKELNRKTGEMIYFADIIPSRGTW 243 Query: 299 KDYIDESTGE-------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 +Y +S L + + L G + + L N D+ + ETL Sbjct: 244 LEYETDSKKIGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDIL--NIFDNDEVLVETL 301 Query: 352 RVDPTN-----DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + D D + + EIY+ +R GE T E A ++ F + +YDL+ GR K Sbjct: 302 QQDSIIGDFKIDWSNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGRFKLK 361 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + L + + ++ +DI+D ++ ++ + ++I + I + + ++ + Sbjct: 362 QKLSIKNRILNKVI-AEDILDANNNVLIAKDTEVTKNNI-----QEISKI--LDQDVMSI 413 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINAKP----ISAAVKEFFGSSQLSQFMDQNNPLS 522 L + + + ++ ++ + E F + D + +S Sbjct: 414 DLK-YLSDIPGNRKVQKIRVYKDSELKTDTTCLIGLTNSSNEEFIT-----VADILSTVS 467 Query: 523 EITHK---------------RRISALG-------PGGLTRERAGFEVRDVHPTHYGRVCP 560 + + RR+ +G GL R + + + +V Sbjct: 468 YLLNLKYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNRIDKNVKE-KLATSDLYKV-- 524 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA--Q 618 +IN+ + A E+ L D+I+ LS + + A Sbjct: 525 ------KTSTIINAKPLTAIIGEFFNLS------QLSQFMDQINPLSELTNKRRLTALGP 572 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + D G V D+ + + + + ++ S A + + R Sbjct: 573 GGLSRDRAGLEVRDVHPSHYGRICPIETPEGPNIGLINNL---STYARVNEYGFITTPYR 629 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIV 733 ++ +Q V L AD+ + V D V++ G I Sbjct: 630 KVINGIIQNDQVEYLTADQEKNFIIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIH 689 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQ-----NTCINQMPCVSLGEPVERGDVLADGPS 788 + A I L +N+ N +P + P+ + + + Sbjct: 690 YIDVSPKQIVSVATSGIPFLEN-DDANRALMGANMQRQAVPLIKPESPIVATGIEFE-AA 747 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILV---SERVVQEDRFTTIHIQELACVSRDTKL 845 D GE VA ED+I+ S+ ++ + R L Sbjct: 748 RDSGE------AIVA--------KEDAIVKYVDSKTIITDG----------ESGIRTYIL 783 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRA 904 E + + + L +S IV +G V G+I+ G +GE L + ++ A Sbjct: 784 SDYERSNN--------GTSLTQSPIVKVGDVVKKGEIIADGPSMDQGE--LAIGQNVVVA 833 Query: 905 IFGEKASDVKDSS-----LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 + +D+ + + + + ID ++ + + E + + K Sbjct: 834 FSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTREIPNMSEQAKR 893 Query: 960 LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD 1019 + I+ G ++ VLV ++ P D+ L ++ + + L Sbjct: 894 HLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRNVKDNSLRVPNG 953 Query: 1020 ELKHEFE-KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 K+ +AK G +L +++++KVY+ KR+IQ GDKM+GRHGNKG+IS+ Sbjct: 954 GEGIVQSIKRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKMSGRHGNKGIISR 1013 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I PIEDMP+ E+GTPVDI+LNP GVPSRMNI G + L + Sbjct: 1014 ILPIEDMPHLEDGTPVDIILNPQGVPSRMNI---------------GQILEIHLGMAAK- 1057 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 + + TPVF+G E E++E+ Sbjct: 1058 --------------------------------------KLNQKVITPVFEGLNEKELEEI 1079 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 + + G++ L DG+TGE F++P+ VG MYMLKL+H+VDDK+HAR+ G YSL+TQQP Sbjct: 1080 MAEAGMTNYGKVTLIDGQTGEPFDKPIAVGVMYMLKLSHMVDDKIHARNVGPYSLITQQP 1139 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQ GGQRFGEMEVWALEAYGAA+TL+E+LT+KSDD+ GR+K Y+ IV EPG Sbjct: 1140 LGGKAQNGGQRFGEMEVWALEAYGAAHTLREILTIKSDDIKGRSKTYEAIVRSKRIPEPG 1199 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +PESFNVL KEI LG N+ + DE Sbjct: 1200 IPESFNVLSKEIMGLGFNMYMIDE 1223 >UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN5_FIBSS Length = 1429 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 365/795 (45%), Positives = 499/795 (62%), Gaps = 91/795 (11%) Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL---VTCRSKGESSL------ 644 V + +V+D I YL+A EE ++ +A A++ LDE F D+ V R K E Sbjct: 671 VVEQIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQDS 730 Query: 645 -----FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 +++D MDV+ Q+VSV A LIPFLEHDDANRALMG+NMQRQAVP LRA+ P+ Sbjct: 731 IAIGDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLLRAEAPV 790 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN--------------EDEMYPGE 745 VGTG+ER A+DSG AK G V +VDA I ++ E+ + G+ Sbjct: 791 VGTGLERRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLGK 850 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 ID Y L K+ RSNQ++CINQ P V++G+ VE GDVLADG STD GELALG+N+ + F+ Sbjct: 851 DPIDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVSTDHGELALGKNILIGFL 910 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PWNGYN+ED++++SE + +D FT+IHI+E RDTK GPEE+T +IPNVGE AL L Sbjct: 911 PWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDALRNL 970 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE+G++ +GAEV DILVGKVTPKGET+LTPEE+LLRAIFGEKA DV+DSSL+ P G+ Sbjct: 971 DENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAPPGMK 1030 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV- 984 G V++ ++F++ ++ E ++ +++ +++ ++ ++ + +L Sbjct: 1031 GVVLETRIFSKKDKADK-KSKEKDQETIEEIRQNFQSQIDRIKDACREHLFDLLAGKSAG 1089 Query: 985 ---------------------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 +D + D++ Q+++ L + Sbjct: 1090 KVMDNETHELLIREGQTYNEQNLRLIDVTKVSPLSTFVVDDDDLQDKVLSLVLVARDNLD 1149 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + +E + K+T+GD+L PGVLK VKVY+A KR + GDKMAGRHGNKGV+S+I P+E Sbjct: 1150 TLTRTMEKEIDKVTKGDELKPGVLKSVKVYIAKKRCLSIGDKMAGRHGNKGVVSRIVPVE 1209 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ E+G P+ I+LNPLGVPSRMNIGQ+LE HLG AAK +G K+ + + + + Sbjct: 1210 DMPFTEDGRPLQILLNPLGVPSRMNIGQVLEVHLGWAAKTLGFKVTTPVFDGAKFEDICK 1269 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 +++AY V ++D + Sbjct: 1270 ELEKAYQKNPIVNYEMDPD----------------------------------------N 1289 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G+ +LYDG+TGE PVT+GYMY LKL HLVDDK+HARS GSY+LVTQQPLGGK+ Sbjct: 1290 NKIIGKAKLYDGKTGEALLNPVTIGYMYYLKLGHLVDDKIHARSIGSYALVTQQPLGGKS 1349 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 QFGGQRFGEMEVWA+EAYGAAYTLQE+LTVKSDDV GR+K+Y IV G + +PG+PESF Sbjct: 1350 QFGGQRFGEMEVWAMEAYGAAYTLQELLTVKSDDVQGRSKVYDAIVKGQNTPKPGIPESF 1409 Query: 1324 NVLLKEIRSLGINIE 1338 NV+++E+ SLG++IE Sbjct: 1410 NVMIREVHSLGLDIE 1424 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 288/1094 (26%), Positives = 465/1094 (42%), Gaps = 130/1094 (11%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNS 66 RK + L++PYL+ +Q S+++F+++D GLE FR +FPI Sbjct: 4 ERKSYSSNKFHLELPYLIEVQKASYEQFLQKDIPQEKRMNVGLERVFRDIFPITDDKDLY 63 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 L+Y Y G P + + EC+ RG+TYS L L L ++E++ E +K+ + +V + + Sbjct: 64 SLKYEGYYFGIPKYSIPECRERGLTYSMELFATLSLQVFEKDGEESKLKEEIKNDVLVCD 123 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 +P+MT+NGTF+ING ERV+VSQLHRSPGV FD + +G+ Y +RIIP+RG+W++F Sbjct: 124 LPIMTENGTFIINGAERVVVSQLHRSPGVSFDEE---MQPNGRSDYKSRIIPHRGAWVEF 180 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPER 245 + D L++ IDR++K+ AT +LR + + TT+ IL+LF++K + D+ + E Sbjct: 181 NTEG-DILYLIIDRKKKIAATAMLRCIGFETTQDILNLFYKKTDEIVLDDAAFNDFDKEG 239 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + I + ++ I + A ID+ Sbjct: 240 VCT-------------------LINRIIFNDVVDEETGEIILE---------ANTVIDDK 271 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 L +L +S ++I L + + I TL D T R AL Sbjct: 272 K---------------LERLRESSVEKITVL--SKEEDNLLIHYTLAADKTKSREDALKA 314 Query: 366 IYRMMR--PGEPPTREAAESLFENLFFS-EDRYDLSAVGRMKFNRSLLRE---------- 412 +Y + E P + AE F+ LF + +YDL VGR + N + Sbjct: 315 VYSVTHQQQEEAPNLQTAERYFDELFLNDPHKYDLGEVGRYRLNAKVYTAAILAKVKEVA 374 Query: 413 -----------EIEGSGILSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGEM 459 +SK D + +++ ++ + NG +DDIDHLGNRR RSVGE+ Sbjct: 375 ERFDRVNEFKMPSVTQMTMSKTDFLAIIEYMVGLFNGDEGYTLDDIDHLGNRRTRSVGEL 434 Query: 460 AENQFRVGLVRVERAVKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 Q VGL R+ R ++E LSL + + P++++N + +S V+ FFG SQLSQFMDQ Sbjct: 435 LAGQISVGLSRMSRVIRENLSLHSEEEQTTPRELVNTRMVSTVVQAFFGQSQLSQFMDQM 494 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ Y Sbjct: 495 NPLSELTHKRRLSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY 554 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE------D 632 A N +GF+ETPYR V D E + + + FVE + Sbjct: 555 AVVNHFGFIETPYRIVGLVEFKDAQGNKCYFPEEKWHFGIFKGFVHDPHLFVELELTQKE 614 Query: 633 LVTCR-----SKGESSLFSRDQV--------DYMDVSTQQVVSVGASLIPFLEHDDANRA 679 + T R + E ++V + + +++ D Sbjct: 615 IDTVRLNLDNRQRELFEGFVNKVFQLKDADGNVSYSKNGFALDDFDGTPDYVQVGDVVEQ 674 Query: 680 LMGANMQRQAVP------------TLRADKPLVGTGMERAVAVDSGVTAV-AKRGGVVQY 726 ++ + L + G + D K+ + Sbjct: 675 IVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQDSIAIG 734 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 + + ++ M + ++ +N+ + M P+ R + G Sbjct: 735 DTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNM--QRQAVPLLRAEAPVVG 792 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDS--ILVSERVVQEDRFTTIH--IQELACVSRD 842 + AL V F D+ I V + F + + + +D Sbjct: 793 TGLE-RRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLGKD 851 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 + N +++ IV +G V GD+L V+ +L + +L Sbjct: 852 PIDEYTLRKFERSNQDSC----INQKPIVNVGDFVEVGDVLADGVSTDH-GELALGKNIL 906 Query: 903 RAIFGEKASDVKDSS-----LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 + +D+ L + + + I+ ++ L E + + Sbjct: 907 IGFLPWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDA 966 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 +E ++ G +LV + + P +R L ++ + L Sbjct: 967 LRNLDENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAP 1026 Query: 1018 YDELKHEFEKKLEA 1031 E ++ + Sbjct: 1027 PGMKGVVLETRIFS 1040 >UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Tax=Bacteria RepID=RPOB_MYCPN Length = 1391 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 337/1095 (30%), Positives = 540/1095 (49%), Gaps = 115/1095 (10%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 R+ +GK P L IQ+ S+Q F++ D LE + FPI+S + Sbjct: 12 YSPTATRRYYGKIATDFVQPNLADIQIRSYQTFLDHD------LENLIAAYFPIKSPNDR 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL------VIYEREAPEGTVKDIKE 119 + + R P + + + TY + L L I + + Sbjct: 66 YTINFKGLRRTAPERNEAQSRSESKTYEIGIYADLELIDSATGTIKKPRKSKKNSATSSV 125 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVL---YNAR 175 V++ +PL+T +G F++NG E+ +++Q+ RSPG++ + K SS K + Y Sbjct: 126 DGVFLTNLPLITRDGVFIVNGIEKFVIAQITRSPGIYMLTKSQLKLSSSRKRVQEGYVCE 185 Query: 176 IIPYRGSWLDFEFDPKDNL---FVRIDRR-------RKLPATIILRALNYTTEQILDLFF 225 ++P GS + K + FV+I R + P T +L+A + ++IL +F Sbjct: 186 VLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGMSGKEILKVFK 245 Query: 226 EKVIFEIRDNKLQM----------ELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 + LR + ++ R Sbjct: 246 NNEFITRSLEAEVYNAKDFLNNVDPEIKNLLREFRDGKTDLRRKGIASDQKIRSLVSDYV 305 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI-- 333 LEK+ L E + D + + A + +L L + Sbjct: 306 LLEKEHKALSEAKPNDPKVGQLEADMDELMDKIITERAAKHIVHELSISLRGLENTDECP 365 Query: 334 -----ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM--------------MRPGE 374 L + Y + +L IY+ ++ G Sbjct: 366 ENSYHALLCSRFFRQRRYNLSAAGRYKVSRKLRITERIYQKTLACDLHLKNGELLLKKGT 425 Query: 375 PPTREAAESLFENLFFSEDRYD--------------------LSAVGRMKFNRSLLREEI 414 +E + + + ++ + ++ N + Sbjct: 426 LLVKEEIDKIKQAAQNNQIDFVQKIKLTTDGSAVNLSPESLLYESLDVYVNNDNFDVSVP 485 Query: 415 --------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + + ++ D I + +I+I + G+ DDIDHLGN+R++ + E+ ++ Sbjct: 486 VVGIHNDNDLNKAITLSDFIASISYVINIPSAIGKYDDIDHLGNKRVKLINELISSRLES 545 Query: 467 GLVRVERAVKERLSLGD-------------------LDTLMPQDMINAKPISAAVKEFFG 507 G+ R+ER +KE+L++ D L + +IN+KPI +++FF Sbjct: 546 GITRMERFLKEKLTIADGVNRGQQINEEGQVIEQAEKKELTIKSLINSKPIQIVIRDFFN 605 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 + QL+QF+D NPLSE+++KRRISA+GPGG++RE ++RDVH + YGR+CPIETPEG Sbjct: 606 THQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIETPEGM 665 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS--NLDE 625 NIGLI SL+ +A+ +E GFL PYRK+ +GV+TDE+ YL+A+ E ++IA+ +S N+DE Sbjct: 666 NIGLIMSLASFAKIDENGFLMAPYRKIKNGVITDEVEYLTALREDEHIIAEISSLVNIDE 725 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 ++ + R + L+ ++DY+DV+ QVVS+G+SLIPFLE+DD+ RALMG NM Sbjct: 726 NNKILDKEIIGRYRSMQGLYDPSKIDYIDVAPHQVVSIGSSLIPFLENDDSARALMGTNM 785 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQA P ++ P+VGTG E +A DSG+T +A G V+YVD S+I I+ + E + Sbjct: 786 QRQAYPLIKPYAPVVGTGQEYKIARDSGLTMLAPCSGTVKYVDNSKITIESDSGEQH--- 842 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +L K+ RSNQNTC N +P V G+ V + +V+ADGP+ + EL+LGQN+ VAF Sbjct: 843 ----TLDLIKFERSNQNTCYNHVPLVEKGQRVTKDEVIADGPAVNKSELSLGQNVLVAFT 898 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 WNGYN+ED+I++SER+V++D T++ I E TK G E+IT DIPNV +A L Sbjct: 899 TWNGYNYEDAIVISERLVKDDVLTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYL 958 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE+GI+ +GAEV GD+LVGKV+PKG+ +++PEEKL +AIF E +V+DSSL++P+G Sbjct: 959 DENGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGD 1018 Query: 926 GTVIDVQVFT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G V V+ F+ +G E + +E+ ++ + Q +K + G I V+ + Sbjct: 1019 GIVSCVKRFSIANGNELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADM 1078 Query: 985 EAEKLDKLPRDRWLE 999 + D P D L Sbjct: 1079 PHLE-DGTPVDILLN 1092 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 177/498 (35%), Positives = 261/498 (52%), Gaps = 33/498 (6%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 +V G VT D ++ +++L+ + +L A + +D+ + V V+ Sbjct: 863 LVEKGQRVTK-DEVIADGPAVNKSELSLGQNVLVAFTTWNGYNYEDAIVISERLVKDDVL 921 Query: 930 DVQVFTRD-----GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 + + + + A K +E I+ G + VLV Sbjct: 922 TSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLVGKVS 981 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 +++ P ++ + + + + L + KR I G++L Sbjct: 982 PKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGDGIVS----CVKRFSIANGNELND 1037 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV++++KVY+ KR+IQ GDK+AGRHGNKGVISK+ P+ DMP+ E+GTPVDI+LNPLGVP Sbjct: 1038 GVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPHLEDGTPVDILLNPLGVP 1097 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV---RQKVDL 1161 SRMNIGQI E HLG AA + ++ + A+ D K + Sbjct: 1098 SRMNIGQIFEMHLGYAAHNLAKRMLISACFDDKKAQALSTEINQPQYKLDRLITGLKAQI 1157 Query: 1162 STFSDEEVMRLAENLRKG-----------------MPIATPVFDGAKEAEIKELLKLGDL 1204 + ++ L G +ATP+F G ++++++ L Sbjct: 1158 TNRGLKDEQAALAQLNNGDIALVLKEIGMSFDDLHFKVATPIFQGVNFQDLQDIMDEAGL 1217 Query: 1205 PT---SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G+ +L DGRTG FE+P+++G MY++KLNH+VDDK+HAR+ G YS +TQQPLGG Sbjct: 1218 KPAETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIHARAVGPYSKITQQPLGG 1277 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 K+Q GGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR K Y IV G EPG+PE Sbjct: 1278 KSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKAYAAIVKGAAFPEPGIPE 1337 Query: 1322 SFNVLLKEIRSLGINIEL 1339 SF +L KE++ L +++ Sbjct: 1338 SFKLLTKELQGLALSVSF 1355 >UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax=Mycoplasma gallisepticum RepID=RPOB_MYCGA Length = 1390 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 347/1089 (31%), Positives = 566/1089 (51%), Gaps = 110/1089 (10%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 K +R+D+ K + L IQ++++++F+E++ LE S FPI+S +G Sbjct: 12 YSPKVVRRDYSKVHNKYNPLNLPGIQVNAYKQFLEKE------LEEIIGSYFPIKSPNGK 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA---PEGTVKDIKEQEV 122 +++ ++ +P +E TY A L V L LV ++ K + + Sbjct: 66 YSVEFHGMKILDPQITKEEASAESKTYDASLYVNLSLVNHQTGTVKKISKKSAKSKAEGI 125 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKV---LYNARIIP 178 Y +IPLMT+NG F++NG E+ +V+Q+ RSPG + + + K +S K Y + P Sbjct: 126 YFADIPLMTENGAFIVNGIEKFVVAQIVRSPGAYILNKSQVKLSNSRKRNQEGYICEVFP 185 Query: 179 YRGSWLDFEFDPKDNLFVRIDR------RRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 +G+ + F + + R + T +L+A + +I ++F Sbjct: 186 SKGTLMLFYIAENKDFVQAVVRDVGGESAKVFSITTLLKAFGLSEIKIKEIFNNNDYILR 245 Query: 233 RDNKLQM-------ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 E +L + S I + +++ + +L ++ +L+ Sbjct: 246 SLESEFYNEKQILNEADIAQLIRDIESDRISKVKSLPIDQKWKNLVLDWYKLNQEKQELL 305 Query: 286 EVP----------------------------------------------VEYIAGKVVAK 299 E I+ + + Sbjct: 306 NSSNPNPTKIESLNTHIGVVLRKLICEKAAKHVIQELSISTRSLDNVSQKEEISYQSILL 365 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE---TLRVDPT 356 + + + +A + L ++S+ ++R DLD I + L+ Sbjct: 366 QHFFQKKRYDLSSAGRHKFVRKL-RVSERLYQRTIAQDIKDLDGNVVIKQGTLMLKEQLD 424 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE-EIE 415 + + + +++ + E + + E + ++ R + + + + E Sbjct: 425 LFKRLSKEKRLDIIKQIDFINPELNTQFTDVNTYEEVQIYVNNDLRNETTQIIGIDGSNE 484 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 L+ D+I ++ ++++ G DDIDHLGN+R++ + E+ +++ + G++R+E+ + Sbjct: 485 SIETLTLADLISIVSYIVNLPFNIGLYDDIDHLGNKRLKLINELLKSKVQTGMMRIEKYI 544 Query: 476 KERLSLGDLDT----------------------LMPQDMINAKPISAAVKEFFGSSQLSQ 513 K++L D + L + +IN KP +K+FF + QL+Q Sbjct: 545 KDKLQTADGNNKLADQDAENDPDSDLGTKSSNDLTVKSVINPKPFQIVIKDFFNTHQLTQ 604 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 F+DQ NPLSE+T+KRRISA+GPGG++RE ++RDVH +HYGR+CPIETPEG NIGLI Sbjct: 605 FLDQQNPLSELTNKRRISAMGPGGISREDPNLDIRDVHYSHYGRICPIETPEGMNIGLIM 664 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD--EEGHFVE 631 SL+ YA ++ GFL TPY KV +G +TD++ +L+A+ E Y+IA+A+S +D ++G Sbjct: 665 SLAFYATIDKNGFLMTPYLKVENGKITDKVEHLTALREDEYIIAEASSYMDVAKDGTINN 724 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 + + R + L+ QVDY+DVS +QVVSV ASLIPFLE+DD++RALMGANMQRQA P Sbjct: 725 EKIIARYRSSQDLYDPKQVDYIDVSPKQVVSVAASLIPFLENDDSSRALMGANMQRQATP 784 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 L+ PLVGTG+E +A DSG+ AK G V YVDAS+I +K +++ Y Sbjct: 785 LLKPYSPLVGTGVEYKIAQDSGMLVTAKNPGTVTYVDASKITVKGEDNKSTD-------Y 837 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 NL K+ +SN+NTC NQ P V++G+ +E LADGPS GELALGQN+ V F W+GYN Sbjct: 838 NLLKFVKSNKNTCYNQSPIVAVGDKIETNQALADGPSMKNGELALGQNVLVGFTTWSGYN 897 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 +ED++++S+R+ ++D +++IHI E TK G EEIT DIPN+ E+A LDE G++ Sbjct: 898 YEDAVIISDRLFKDDVYSSIHIDEYTIECLRTKNGDEEITRDIPNISESAKRYLDEEGVI 957 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 +GAEV GDILVGK +PKG+ +LTPEEKL++AI G+K V++SSL+VPNG G V + Sbjct: 958 MVGAEVKEGDILVGKTSPKGQVELTPEEKLIQAILGDKVKQVRESSLKVPNGGDGIVAGI 1017 Query: 932 QVFT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 + F+ +G E + LE+ ++ + Q +K + G I ++ + + D Sbjct: 1018 KRFSIANGDELEDDVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPHLE-D 1076 Query: 991 KLPRDRWLE 999 P D L Sbjct: 1077 GTPLDILLN 1085 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 183/499 (36%), Positives = 266/499 (53%), Gaps = 35/499 (7%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV +G ++ L G GE L + +L + +D+ + V Sbjct: 856 IVAVGDKIETNQALADGPSMKNGELAL--GQNVLVGFTTWSGYNYEDAVIISDRLFKDDV 913 Query: 929 -----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 ID + + + + ++ K +E ++ G + +LV Sbjct: 914 YSSIHIDEYTIECLRTKNGDEEITRDIPNISESAKRYLDEEGVIMVGAEVKEGDILVGKT 973 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 +++ P ++ ++ L D+ KQ + L KR I GD+L Sbjct: 974 SPKGQVELTPEEKLIQAILGDKVKQVRESSLKVPNGGDGIVAG----IKRFSIANGDELE 1029 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 VL++VKVY+ KR+IQ GDK+AGRHGNKG+ISKI EDMP+ E+GTP+DI+LNPLGV Sbjct: 1030 DDVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPHLEDGTPLDILLNPLGV 1089 Query: 1104 PSRMNIGQILETHLGMAA--------------KGIGDKINAMLKQQQEVAKLR-----EF 1144 PSRMNIGQI E HLG AA K + D+++ + ++ + E Sbjct: 1090 PSRMNIGQIFELHLGYAARELAKAKLIEACFDKKLADQLDTVFGLEKSKTQSLIKNLVEH 1149 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK-GMPIATPVFDGAKEAEIKELLKLGD 1203 ++ + + D + +L IATPVF+G ++K ++ Sbjct: 1150 MKSIGVTSLAQTKNRVRTIDIDIVLKQLGLTYDDLAFKIATPVFEGVNMEDLKAIMSEAG 1209 Query: 1204 LPTS---GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 + G+ +L DGRTGE FE+P++VG MYMLKL+H+VDDK+HAR+ G YS +TQQPLG Sbjct: 1210 IDPDKTEGKFKLIDGRTGEPFEKPISVGIMYMLKLDHMVDDKIHARAVGPYSKITQQPLG 1269 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP 1320 GK+Q GGQRFGEMEVWAL+AYGAA+ L+E+LT+KSDDV GR Y IV G EPG+P Sbjct: 1270 GKSQNGGQRFGEMEVWALQAYGAAHNLREILTIKSDDVRGRNMTYNAIVKGLSIPEPGVP 1329 Query: 1321 ESFNVLLKEIRSLGINIEL 1339 ESF +L KE++ LG+ + + Sbjct: 1330 ESFKLLTKELQGLGMTLNV 1348 >UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax=Mycoplasma penetrans RepID=RPOB_MYCPE Length = 1375 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 366/1057 (34%), Positives = 563/1057 (53%), Gaps = 94/1057 (8%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K +R+D+ K + + P LL++Q ++F KFI+ + LE +S+FPI+S G Sbjct: 12 SKYVLRRDYSKIEKNFNEPNLLNLQKNAFHKFIDTE------LEGTIKSIFPIKSIGGRY 65 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE-----QE 121 L+Y+ +L +P +E + G TY PL V L +V E + T K K Sbjct: 66 SLEYIGMKLEKPKRSEKEARNEGKTYDRPLYVDLAIVDNESGEVKKTTKSSKNKASNTDG 125 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKVL---YNARII 177 ++ IP++T+ GTF++NG E+ ++SQ+ RSPG + + K +S K + Y I+ Sbjct: 126 IFFASIPMITEKGTFIVNGIEKFVISQIVRSPGAYILTKSQIKLSNSRKRIQEGYICEIL 185 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRR-------RKLPATIILRALNYTTEQILDLFFEKVIF 230 P +G+ L F F ++ F+++ R +P T L+AL E+IL++F Sbjct: 186 PAKGT-LFFIFMAENKDFIQVMFRDAIGESTHTIPITAFLKALGLNKEEILNIFANHKSI 244 Query: 231 ------EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 EI + K E + + K R + ++ + + + Sbjct: 245 KNSLDNEIYNEKDVFETDELINLRKNLNSSDSNRSYGVDTKLRELFKKYSSLKSQLEAEG 304 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + +V+ +++ +L+ ++ + +++ N Sbjct: 305 KNAEKQKELNEVINNIISEKAAKDLVINLSISTKNIDSKFRLSNKETTYQSIIYNHFFSN 364 Query: 345 PYI-----------SETLRVDPTNDRLSA--LVEIYRM-------------MRPGEPPTR 378 + + R+ A L +I + + T+ Sbjct: 365 KSFDLSKAGRFKMARKMRLSERLYQRVLAEDLKDINGKVVIKKNTLIQKHELDTIKQLTK 424 Query: 379 EAAESLFENLFFSEDRYDLSAVGRM-KFN------------RSLLREEIEGSGILSKDDI 425 E + N+ E ++ V + K N + + LS DI Sbjct: 425 EGKLGIVHNVNLDERISKMANVVKYEKINVYQDNDSQDEFIPIIGTDTSLDKPTLSISDI 484 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD-- 483 + + +I++ G DDIDHLGN+R++ + E+ + + + GLVR+E+ + ++L++ D Sbjct: 485 LSITSYVINLDYDIGFYDDIDHLGNKRLKLIDELLKTRAQAGLVRIEKFINDKLAIADGA 544 Query: 484 ------------LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 +L + +IN KP + KEFF S QL+QF+DQ NPL+E+T+KRRIS Sbjct: 545 NKSQEQSEEQEPKKSLTVKSIINTKPFQISFKEFFNSHQLTQFLDQQNPLAELTNKRRIS 604 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 A+GPGG++RE ++RDVH +HYG++CPIETPEG NIGLI SL+ YA T+E GFL TPY Sbjct: 605 AMGPGGISREDPNLDIRDVHYSHYGKICPIETPEGMNIGLIMSLATYASTDENGFLITPY 664 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 R V +GV+TDEI +L+A+ E Y+IA +N N+++ F ED V CR + F VD Sbjct: 665 RIVKNGVITDEIRWLTALSEDEYIIACSNLNVEKN-KFKEDKVLCRYRSSWEFFDVKDVD 723 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 ++D+S +QVVS+ AS IPFLE+DDANRALMGANMQRQA P + P+VGTG E +A D Sbjct: 724 FIDISPKQVVSIAASSIPFLENDDANRALMGANMQRQATPLISPIAPIVGTGNEYKIAHD 783 Query: 712 SGV--TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 SG+ ++ G V YVD I IK +E +Y LTK+ +SNQNTC NQ+P Sbjct: 784 SGMAAVYDGEKDGTVSYVDGGTIKIKSGSEE--------KVYELTKFNKSNQNTCNNQVP 835 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 VS+GE V +G +ADGP+ GELALGQN+ VAF W+GYN+ED+I++S+R+ ED FT Sbjct: 836 IVSVGEKVTKGTTIADGPAMSNGELALGQNVLVAFTTWSGYNYEDAIILSKRLFMEDIFT 895 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 +IHI E + TK G EEIT DIPNV E++ LD+ GI+ +GAEV GD+LVGK++P Sbjct: 896 SIHIVEYSVDCLKTKNGDEEITRDIPNVSESSKKYLDDEGIIMVGAEVKEGDVLVGKISP 955 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALEI 948 KG+ +LT EEKLL+AIFG+K+ + K++SL+VP+G GTV V+ F D E + +E Sbjct: 956 KGQVELTSEEKLLQAIFGDKSKNHKETSLKVPHGGEGTVAMVKRFKVEDDYELNADVIEQ 1015 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 ++ + Q +K + G I ++ + Sbjct: 1016 IKVYVVQKRKIQIGDKMAGRHGNKGIISKIVPVEDMP 1052 Score = 359 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 188/537 (35%), Positives = 279/537 (51%), Gaps = 42/537 (7%) Query: 842 DTKLGPEEITADIPNVGEAALSKLDES-GIVYIGAEVTGGDILV-GKVTPKGETQLTPEE 899 K G EE ++ ++ + + IV +G +VT G + G GE L + Sbjct: 807 KIKSGSEEKVYELTKFNKSNQNTCNNQVPIVSVGEKVTKGTTIADGPAMSNGELAL--GQ 864 Query: 900 KLLRAIFGEKASDVKDS---SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 +L A + +D+ S R+ T I + ++ D ++ EI + Sbjct: 865 NVLVAFTTWSGYNYEDAIILSKRLFMEDIFTSIHIVEYSVDCLKTKNGDEEITRDIPNVS 924 Query: 957 KKDLS--EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL 1014 + ++ I+ G + VLV +++ ++ L+ D+ K ++ L Sbjct: 925 ESSKKYLDDEGIIMVGAEVKEGDVLVGKISPKGQVELTSEEKLLQAIFGDKSKNHKETSL 984 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 + KR K+ +L V++ +KVY+ KR+IQ GDKMAGRHGNKG Sbjct: 985 KVPHGGEGTVA----MVKRFKVEDDYELNADVIEQIKVYVVQKRKIQIGDKMAGRHGNKG 1040 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK------- 1127 +ISKI P+EDMP+ E+GT +DI+LNPLGVPSRMNIGQILE HLG+A K + Sbjct: 1041 IISKIVPVEDMPHLEDGTTIDIMLNPLGVPSRMNIGQILELHLGLAMKKLTLSKVLELYY 1100 Query: 1128 -----------INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + + + K E I + + + + + F + + Sbjct: 1101 DKKPASDFSLWFGIHEEASRNLIKNLEKILNEKQIKSLDQANKEFTDFDLSLALSRSGIS 1160 Query: 1177 RKGMPI--ATPVFDGAKEAEIKELLKLGDLPT---------SGQIRLYDGRTGEQFERPV 1225 R+ + ATPVF+G ++KE + + SG+ L DGRTGE F+ V Sbjct: 1161 REKLIYKTATPVFEGVNRTDLKEAMTEAGIDPINGKLGEGKSGKFNLIDGRTGEYFDGEV 1220 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +VG MYMLKL+H+VDDK+H+R+ G YS +TQQPLGGK+Q GGQRFGEMEVWALEAYGAA+ Sbjct: 1221 SVGIMYMLKLDHMVDDKIHSRAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAH 1280 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 L+E+LT+KSDDV GR Y I+ G E G+PESF +L K+++ LG+ + + E Sbjct: 1281 NLRELLTIKSDDVKGRNNTYNAIIKGKPIPESGLPESFKLLTKQLQGLGLQVSITKE 1337 >UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Tax=Mycoplasma RepID=RPOB_MYCH2 Length = 1220 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 368/1024 (35%), Positives = 537/1024 (52%), Gaps = 74/1024 (7%) Query: 1 MVYSYTEKK----RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV 56 M + Y K R+ +G + L+ P L +SF F+ G+ AF + Sbjct: 1 MNHIYKLKSYGIGTDRRFYGVANKTLETPDFLDPVRESFDWFLH------VGIPEAFDRI 54 Query: 57 FPIQSYSGNSELQY--VSYRLGEPVFD---VQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 FPI S +G E+ + S R+ +P + ++E +I+G TYSA + V L V E Sbjct: 55 FPIVSANGKLEISFRRGSLRVEKPENEYLAIREAKIKGKTYSARVYVTLVKVHSED---- 110 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +++EQE+ + E P MT GTF+ING E+V+VSQL RSPGV F + + + Sbjct: 111 ---GEMEEQEILLAEFPFMTQGGTFIINGFEKVVVSQLIRSPGVCFRENVRNQQADD-LF 166 Query: 172 YNARIIPYRGSWLDFEFDPK----DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK 227 IIP GSW++ D + RID+ + +P LRA+ +T E + F Sbjct: 167 NKVEIIPQLGSWMEIFHKVTGNQVDTVKFRIDKHKNIPLLSFLRAIGFTNETVRKYFGNS 226 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 +E+ + +E R + KDD E Sbjct: 227 PEL------------------------LESIRRHKLESLEENLELIYRIVRKDDRITEEG 262 Query: 288 PVEYIAGKVVAKD-YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 I + + Y STG + A + L + + G Y Sbjct: 263 LKNLIPSIIFNERRYNLASTGRFMLNAKLNLVERISQTYLAEDLVSKKNKIL--FKKGTY 320 Query: 347 ISETLR---VDPTNDRLSALVEIYRMM-----RPGEPPTREAAESLFENLFFSEDRYDLS 398 I+ L + N+ L EI + R E E F S Sbjct: 321 ITRQLALEIQEKFNNEEIPLSEIEGVDSTIYARQLEITRNENLWKRFYVAIVKVWPNKKS 380 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 + + + + L DII ++ ++ + G+ DD D L N+RI SVGE Sbjct: 381 MLQESEPVNVIATDPNLNEKTLVLSDIIAIVSYYFNLLSNLGKSDDPDSLVNKRIVSVGE 440 Query: 459 MAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 + +NQF + L ++E+ KE++S DL L + +IN KPI K FF SS+LSQFMDQ Sbjct: 441 LLQNQFLIALTKIEKNSKEKISTKSDLSQLTVKSIINNKPIYNQFKNFFNSSKLSQFMDQ 500 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NPL E+ KR++++LGPGGL R+ A FEVRDVH THYGR+CP+ETPEG NIGLI + SV Sbjct: 501 INPLGEMASKRKVTSLGPGGLNRDTAQFEVRDVHTTHYGRICPVETPEGQNIGLILNFSV 560 Query: 578 YAQTNEYGFLETPYRKVTDGVVT-DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 +++ N+YGF+ TPY +V + +V ++H+L+A EE + AQ+ +D+ + D +T Sbjct: 561 FSRINQYGFIITPYYQVKNRIVDYSKVHWLAASEEFDKSFAQSGVEIDQNNRIIPDKLTV 620 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + +QV+Y+DVS+ Q+ S+ AS IPFLE++DANRALMG+NMQRQAVP ++++ Sbjct: 621 RKNQTYLVLDAEQVNYIDVSSMQMTSISASAIPFLENNDANRALMGSNMQRQAVPLIKSE 680 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 PLV TG+E AVA S A G V YVDA +I+I E +I+ L + Sbjct: 681 APLVATGIEEAVARFSATNLRAAISGKVTYVDAKKIIIDDGEK--------PEIHYLRYF 732 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 +SNQ T I Q P V +G+ V++G ++ DGPSTD GELALG+N+ VAF W GYN+ED+I Sbjct: 733 EKSNQETLILQKPTVKVGDKVKKGQLICDGPSTDNGELALGKNVLVAFSTWYGYNYEDAI 792 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 ++SE++V++D FT+IHIQE R TK G + +TA+IPN + LD +GIV +G+E Sbjct: 793 IISEKLVKDDVFTSIHIQEQTIKFRSTKAGNDILTAEIPNASAKSRLHLDANGIVIVGSE 852 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVG+ +PKGE T EEKL+ AI+G+KA KD+SLRV NG GTVIDVQ+ +R Sbjct: 853 VDTGDILVGRTSPKGEDNPTAEEKLMAAIWGKKALAQKDTSLRVKNGEGGTVIDVQILSR 912 Query: 937 D-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 D G ++ + ++ + Q +K + G + +L + + D P D Sbjct: 913 DQGDNLEEGVGMLIKILIAQKRKIKVGDKMAGRHGNKGVVSVILPVEDMPFLE-DGTPVD 971 Query: 996 RWLE 999 L Sbjct: 972 IVLN 975 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 269/1169 (23%), Positives = 445/1169 (38%), Gaps = 163/1169 (13%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ-LEKDDVKL 284 E+ + ++ + P + +F I KV V + R R+ + Sbjct: 107 HSEDGEMEEQEILLAEFP--FMTQGGTFIINGFEKVVVSQLIRSPGVCFRENVRNQQADD 164 Query: 285 IEVPVEYIAGKVVAKDYIDESTG----ELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 + VE I + + TG + + ++ LL+ L G Sbjct: 165 LFNKVEIIPQLGSWMEIFHKVTGNQVDTVKFRIDKHKNIPLLSFLRAIGFTNETV--RKY 222 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 + P + E++R L IYR++R + T E ++L ++ F+E RY+L++ Sbjct: 223 FGNSPELLESIRRHKLESLEENLELIYRIVRKDDRITEEGLKNLIPSIIFNERRYNLAST 282 Query: 401 GRMKFNRSLLREEIEGSGILSKDDI-------------------IDVMKKLIDIRNGKGE 441 GR N L E L++D + +++ +K + E Sbjct: 283 GRFMLNAKLNLVERISQTYLAEDLVSKKNKILFKKGTYITRQLALEIQEKFNNEEIPLSE 342 Query: 442 VDDIDHLGNRRIR--SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD-MINAKP- 497 ++ +D R + E +F V +V+V K L + ++ D +N K Sbjct: 343 IEGVDSTIYARQLEITRNENLWKRFYVAIVKVWPNKKSMLQESEPVNVIATDPNLNEKTL 402 Query: 498 ----ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 I A V +F L + +++ + +KR +S A + Sbjct: 403 VLSDIIAIVSYYF---NLLSNLGKSDDPDSLVNKRIVSVGELLQNQFLIALTK------- 452 Query: 554 HYGRVCPIETPEGPNIGL---INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE 610 IE I ++ L+V + N ++ + ++ + Sbjct: 453 -------IEKNSKEKISTKSDLSQLTVKSIINNKPIYNQFKNFFNSSKLSQFMDQINPLG 505 Query: 611 E-----GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS--V 663 E + N D V D+ T + + + + + V S Sbjct: 506 EMASKRKVTSLGPGGLNRDTAQFEVRDVHTTHYGRICPVETPEGQNIGLILNFSVFSRIN 565 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 I + NR + + + + DK +G+E + R Sbjct: 566 QYGFIITPYYQVKNRIVDYSKVH-WLAASEEFDKSFAQSGVEIDQNNRIIPDKLTVRKNQ 624 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 V + V ++ M + +N+ + M ++ ++ Sbjct: 625 TYLVLDAEQVNYIDVSSMQMTSISASAIPFLENNDANRALMGSNMQRQAVPLIKSEAPLV 684 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 A G + + N+R A Y + + ++ + IH S Sbjct: 685 ATGIEEAVARFSA-TNLRAAISGKVTY-----VDAKKIIIDDGEKPEIHYLRYFEKSNQE 738 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 L ++ T V +G +V G L+ +L + +L Sbjct: 739 TLILQKPT-------------------VKVGDKVKKGQ-LICDGPSTDNGELALGKNVLV 778 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS-- 961 A + +D+ + +S ++ VFT +++ + ++ Sbjct: 779 AFSTWYGYNYEDAII-----ISEKLVKDDVFTSIHIQEQTIKFRSTKAGNDILTAEIPNA 833 Query: 962 --------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 + I+ G +LV + + ++ + + + Sbjct: 834 SAKSRLHLDANGIVIVGSEVDTGDILVGRTSPKGEDNPTAEEKLMAAIWGKKALAQKDTS 893 Query: 1014 LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 L + E + ++ ++ QGD+L GV ++K+ +A KR+I+ GDKMAGRHGNK Sbjct: 894 LRVKNGEGGTVIDVQILSR----DQGDNLEEGVGMLIKILIAQKRKIKVGDKMAGRHGNK 949 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 GV+S I P+EDMP+ E+GTPVDIVLNP GVPSRMNI G + L Sbjct: 950 GVVSVILPVEDMPFLEDGTPVDIVLNPQGVPSRMNI---------------GQVLELHLG 994 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 + K TPVFDG K Sbjct: 995 MVAKKLK---------------------------------------TKFVTPVFDGIKIE 1015 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 IK+L ++P SG+ +L+DG +G+ FE PV+VGYMYMLKL H+VDDKMHARS G YSL Sbjct: 1016 TIKKLFDEANIPESGKFKLFDGISGQAFENPVSVGYMYMLKLLHMVDDKMHARSIGPYSL 1075 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 TQQPLGGK+Q GGQRFGEME WALE++GA L E+LT KSD++ GR +Y NI+ G Sbjct: 1076 TTQQPLGGKSQNGGQRFGEMETWALESFGATSVLSELLTYKSDNIQGRNLLYNNIISGGK 1135 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELEDE 1342 PG PESFNVL E+R L I +E+ Sbjct: 1136 IPSPGTPESFNVLAYELRGLLIKLEVHKN 1164 >UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax=Deinococcus RepID=RPOB_DEIGD Length = 1152 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 356/909 (39%), Positives = 511/909 (56%), Gaps = 43/909 (4%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGET 250 D L R+ P + L Y L K I+++++ + +P L + Sbjct: 75 DFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKDSGLIKEDQVFLGDLP--LMTDD 132 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 SF I +V + + R + K K+ + + + E G ++ Sbjct: 133 GSFVINGADRVVISQIHRSPGVYFTSSYKGIKKMYTAAIIPMPKRGPW--IELEFNGGVL 190 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT--NDRLSALVEIYR 368 + + L G+ + L D + + AL+ ++ Sbjct: 191 EMKVNKRKFPVSLLLRVLGYDDAQLKALFTEFDPAA---ELPEDKSAGMNPDEALLRLFT 247 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD---- 424 ++RPG+PP R+ A L RYDL GR K N L + +L+ +D Sbjct: 248 VLRPGDPPKRDKAIQYLYGLLADPKRYDLGEPGRFKMNTKLGTR-RQDRTLLTFEDGRFG 306 Query: 425 ---IIDVMKKLIDIRNGK-----------------GEVDDIDHLGNRRIRSVGEMAENQF 464 ++D ++ L+ ++ G DDIDHLGNRR+R+VGE+ +Q Sbjct: 307 DAGLVDTIRYLMALQQGLETVTMGADEDGVAIEVPVTEDDIDHLGNRRVRTVGELLADQL 366 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 RVG+ R+ R V+ER+ LG+ D P ++N +PI AA++EFFG SQLSQF DQ NPLS++ Sbjct: 367 RVGMGRMARGVRERMLLGNPDAATPTKLVNNRPIVAAMREFFGRSQLSQFKDQTNPLSDL 426 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 HKRRISALGPGGLTRERAGF+VRDVH THYGR+CPIETPEG NIGLI+SLS YA+ N+ Sbjct: 427 RHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPIETPEGANIGLISSLSSYAKVNDL 486 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 GF+E PYR+V DG VTD++ Y++A E YVIAQANS L+ +G F E+ V R KG+ L Sbjct: 487 GFIEAPYRRVVDGRVTDDVVYMTADIEDRYVIAQANSPLNPDGTFAEERVLARKKGDPML 546 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 ++ +VD+MDVS +Q+VS+ SLIPFLEHDDANRALMG+NMQ QAVP +RAD P VGTG+ Sbjct: 547 YAPTEVDFMDVSPKQIVSINTSLIPFLEHDDANRALMGSNMQSQAVPLVRADSPAVGTGV 606 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED--EMYPGEAGIDIYNLTKYTRSNQN 762 E V DSG + ++ G V YVDA I + + ED ++ + + + L ++TRSNQ Sbjct: 607 EERVVTDSGTSVISDVTGRVTYVDARAIQVTLTEDAPQIGLVKGNVRTFELVRFTRSNQG 666 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 T ++Q P VS+G+ V G V+ADGP++D G LALGQN+ +A MP++G+NFED+I +SE + Sbjct: 667 TNLDQHPIVSVGDEVVPGQVIADGPASDQGRLALGQNITIAIMPFDGFNFEDAICISEGL 726 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 V++D +T++HI++ +RDTKLGPE+IT DIP + EAAL LDE GIV +GAEV GDI Sbjct: 727 VRKDFYTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAALRDLDEDGIVRVGAEVKPGDI 786 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT--RDGVE 940 LVGK + KGE++ TPEE+LLR+IFGEKA +VKD+SLRV +G G V+ F +GV+ Sbjct: 787 LVGKTSFKGESEPTPEERLLRSIFGEKAREVKDTSLRVQSGQGGIVVKTVRFRRGDEGVD 846 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 E+ + + Q ++ + G + +L + + D P D + Sbjct: 847 LKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGVVSKILPPEDMPYLE-DGTPVD-LVFN 904 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 L + N + L E+ +K + A + V ++RR Sbjct: 905 PLGVPSRMNLGQILETHLGEVARLTGQKFVTPVF--DSATEEAIKEMLEVAAAERLQRRK 962 Query: 1061 QPGDKMAGR 1069 G ++ R Sbjct: 963 DEGFELDKR 971 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 193/505 (38%), Positives = 283/505 (56%), Gaps = 32/505 (6%) Query: 850 ITADIPNVGEAAL-SKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFG 907 T ++ + + LD+ IV +G EV G ++ G + +G L + + AI Sbjct: 653 RTFELVRFTRSNQGTNLDQHPIVSVGDEVVPGQVIADGPASDQGRLAL--GQNITIAIMP 710 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS------ 961 + +D+ + + G ++ +T +EKD+ ++ ++ +D+ Sbjct: 711 FDGFNFEDA-ICISEG----LVRKDFYTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAA 765 Query: 962 ----EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 +E I+ G + +LV + + P +R L ++ ++ + L Q Sbjct: 766 LRDLDEDGIVRVGAEVKPGDILVGKTSFKGESEPTPEERLLRSIFGEKAREVKDTSLRVQ 825 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + + + +G DL PGV ++V+VY+A KR++Q GDK+A RHGNKGV+S Sbjct: 826 SGQGGIVVKTVRFRR---GDEGVDLKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGVVS 882 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 KI P EDMPY E+GTPVD+V NPLGVPSRMN+GQILETHLG A+ G K + Sbjct: 883 KILPPEDMPYLEDGTPVDLVFNPLGVPSRMNLGQILETHLGEVARLTGQKFVTPVFDSAT 942 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 ++E ++ A ++++ D D+ + + K I+ P D A Sbjct: 943 EEAIKEMLEVAAAER--LQRRKDEGFELDKREQEVLDRAGKLGVISPPNGDYAAAQ---- 996 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L +G+ LYDGRTGE PV VG MY++KL H+V+DK+HARSTG YSL+TQQ Sbjct: 997 ----MQLARTGKSVLYDGRTGEPISGPVVVGTMYVMKLYHMVEDKLHARSTGPYSLITQQ 1052 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGKAQFGGQRFGEMEVWALEAYGAA+TLQEMLT+KSDD++GR Y++IV G Sbjct: 1053 PLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIDGRDAAYQSIVKGEEVSGS 1112 Query: 1318 GMPESFNVLLKEIRSLGINIELEDE 1342 +PESF VL+KE+ SLG+++E+ D Sbjct: 1113 TIPESFKVLVKELHSLGLDVEVLDN 1137 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 92/260 (35%), Positives = 147/260 (56%), Gaps = 23/260 (8%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPI 59 S T++K + FG+ +V+ +P L +Q++SF+ F++ D GL++AFR VFPI Sbjct: 2 SLTDQKPRIERFGEITEVIPLPNLTEVQVNSFKAFLQADKAPDERDDTGLQSAFREVFPI 61 Query: 60 -QSYSGN---SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 ++ G L ++ YRLGEP + +EC+ + +TY APL KL+L+ + Sbjct: 62 DETEKGRSTGLVLDFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKDS-------G 114 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 IKE +V++G++PLMTD+G+FVING +RV++SQ+HRSPGV+F S K +Y A Sbjct: 115 LIKEDQVFLGDLPLMTDDGSFVINGADRVVISQIHRSPGVYFTSSYKGI----KKMYTAA 170 Query: 176 IIPY--RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 IIP RG W++ EF+ L ++++ +RK P +++LR L Y Q+ LF E Sbjct: 171 IIPMPKRGPWIELEFNG-GVLEMKVN-KRKFPVSLLLRVLGYDDAQLKALFTEFDPAAEL 228 Query: 234 DNKLQMELVPERLRGETASF 253 + P+ + Sbjct: 229 PEDKSAGMNPDEALLRLFTV 248 >UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax=Bigelowiella natans RepID=RPOB_BIGNA Length = 1099 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 332/1205 (27%), Positives = 545/1205 (45%), Gaps = 136/1205 (11%) Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 F + K + + I LD + K L + LP + + Sbjct: 7 FFPNLLKLQRKSFLTFLKYGIKKEIKKLDITKNKKKLLVYPNLFQLNLPTYTCNECVITS 66 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 +L + +D + L + +F + +V + + R + + Sbjct: 67 KTYNCELVIPIRLISYKDEIEWITLTNIPIMTNKCNFITNGSPRVIMSQITRAPGIYYHK 126 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 ++ + IA + + + + L L G + + Sbjct: 127 ENENTY-----YADIIAERGNWLRIEIDKKNNIWMKVKKVPKVPALMFLQALGVTKSNLI 181 Query: 337 FTNDLDHGPYISETLRVDPTNDRLSAL--VEIYRMMRP--GEPPTREAAESLFENLFFSE 392 L P ++ + + AL +E+Y + + + + F + Sbjct: 182 ---KLLKYPIPNQNHNLGNFKSQKEALEKIELYSQLESSINSRNLKNQNKITIFDRFMNP 238 Query: 393 DRYDLSAVGRMKFNRSLL-REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 YDL GR++ N+ EE L+ D I + L+ I+ E DDID+L N+ Sbjct: 239 KYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILAVHFLLKIKYKIEETDDIDNLKNK 298 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 R++ GE+ ++QF +G++R+++ VK++L + L ++ ++ PI+ + EFFG + L Sbjct: 299 RVKIAGELIQSQFGIGILRLQKYVKDKLG-NIKNNLHLTNIFSSTPINTTLAEFFGVNPL 357 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 SQFMD+ NPL+ +THKRR+S+LG GG+ R+ A +R +HPT YGR+CPIETPEG N GL Sbjct: 358 SQFMDEVNPLATLTHKRRLSSLGIGGVNRDTATLTIRSIHPTLYGRICPIETPEGKNAGL 417 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHF 629 +NS +++A+ N G +ETP+ +V +G + E I+YLSA +E I + G Sbjct: 418 VNSFALFAEINSEGLIETPFFRVCNGRILYEMGINYLSANQEDKSNIVPFDIKKSRIGFL 477 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 ++ + R K + S+ +VD++ +S Q++SV SLIPF+EH+DANR LMG+NMQRQA Sbjct: 478 SKNKIAARIKQQFKEVSKKKVDFISISQLQMLSVATSLIPFMEHNDANRVLMGSNMQRQA 537 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 VP L+ + LVGTG+E + D + G + Y+ +I I +E + Sbjct: 538 VPLLKTECCLVGTGLETKIFFDLQDNVKSPPNGFISYLSLKKITISNIRNEHKSFNFKSN 597 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 TCI S + L Sbjct: 598 PLETI--------TCI-------------------KSKSRNFNRLK-------------- 616 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN +D + S+ ++ I R+ K+ + N G ++++L + Sbjct: 617 YNLKDLLTNSKE--------SLKITNYMSYVREQKIQYYIKQYNSSNQGTCSVNRLTLN- 667 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 G + + L+ G + E L + +F S + N V+ Sbjct: 668 ---EGQFIIKKNPLIS-----GLSSCRNELALGKNLFVGYI------SWKGYNFEDAIVL 713 Query: 930 DVQ-----VFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLV 980 + Q ++T +EK + ++ + + +D+ + L+ +I + + Sbjct: 714 NEQLVINNIYTSTHLEKFETEIKKNKENSEIITRDIKNISFLNKKNLDKNGIIKIGSRVF 773 Query: 981 AGGVEAEKLDKL------PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 1034 + + KL + P + L L + + L + + Sbjct: 774 SDDILVGKLLPIETRILSPYRKLLYEILQKQNDHYRNTSLRVPKYKRGRITFVDYIKDKG 833 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 KI + ++ LK +K++L R IQ GDK++GRHGNKGVISKI I++MPY +G P+ Sbjct: 834 KIKKKTEILKD-LKTIKIHLMQNRLIQIGDKISGRHGNKGVISKILKIQEMPYLNDGIPL 892 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 DI+LNPLGVPSRMNIGQ+LE LG++ + + + + G + Sbjct: 893 DILLNPLGVPSRMNIGQVLECLLGLSCFYLQRRFKVIPFDES--------------FGFE 938 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 V + S + L G+ R++D Sbjct: 939 VSRNFIYSNLYFSNIKTGNN-------------------------WLLHPYYPGKNRIFD 973 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 +G F++P+T+G Y+LKL HLV++K+HARSTGSYSLVTQQPL GK++ GGQR GEME Sbjct: 974 SYSGLPFDQPITIGKAYILKLIHLVEEKVHARSTGSYSLVTQQPLKGKSKKGGQRVGEME 1033 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 VWALE YGAAYTL E+LTVKSDD+ R K+ +I++ + G E+F VL++E++SL Sbjct: 1034 VWALEGYGAAYTLHEILTVKSDDIKSRQKVLTSILNSETI-KFGTTETFKVLIRELQSLC 1092 Query: 1335 INIEL 1339 +NI+ Sbjct: 1093 LNIQF 1097 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 75/354 (21%), Positives = 132/354 (37%), Gaps = 34/354 (9%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 L P LL +Q SF F++ YG++ + + I + ++L P Sbjct: 4 TPLFFPNLLKLQRKSFLTFLK------YGIKKEIKKLD-ITKNKKKLLVYPNLFQLNLPT 56 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 + EC I TY+ L + +RL+ Y+ E + + + IP+MT+ F+ N Sbjct: 57 YTCNECVITSKTYNCELVIPIRLISYKDEI----------EWITLTNIPIMTNKCNFITN 106 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G+ RVI+SQ+ R+PG+++ H + Y A II RG+WL E D K+N+++++ Sbjct: 107 GSPRVIMSQITRAPGIYY-------HKENENTYYADIIAERGNWLRIEIDKKNNIWMKVK 159 Query: 200 RRRKLPATIILRALNYTTEQILDLF---FEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 + K+PA + L+AL T ++ L + + K Q E + + I Sbjct: 160 KVPKVPALMFLQALGVTKSNLIKLLKYPIPNQNHNLGNFKSQKEALEKIELYSQLESSIN 219 Query: 257 ANGKVYVEKGRRITARHIRQLEKDD-------VKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + K + K E I + + L Sbjct: 220 SRNLKNQNKITIFDRFMNPKYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILAVHFL 279 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 + D + L K L + G + D + + L Sbjct: 280 LKIKYKIEETDDIDNLKNKRVKIAGELIQSQFGIGILRLQKYVKDKLGNIKNNL 333 >UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Tax=Mycoplasmataceae RepID=RPOB_UREP2 Length = 1434 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 360/1128 (31%), Positives = 558/1128 (49%), Gaps = 145/1128 (12%) Query: 2 VYSYTEK----KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF 57 +YTEK K +R+D+ K + P LL IQ++SF++F+E+D L+ S+F Sbjct: 4 NKNYTEKFITDKVMRRDYSKIKSNFEGPNLLEIQVESFKRFMEKD------LKEVISSIF 57 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 P++S G L + ++ +P D C+ G T+ P+ + L L + ++ Sbjct: 58 PLKSPQGKYTLAFKGLKIKQPTKDESACRDEGKTFETPIYIDLELTDNYTGEVKRAQRNT 117 Query: 118 K--EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKVLYN- 173 K E +Y+G IP MT+ GTFVING E+ ++SQ+ RSPG++ K + S K L+ Sbjct: 118 KTGEDGIYLGAIPKMTEKGTFVINGIEKFVISQIVRSPGIYVLGKSSIKLNGSRKRLFEG 177 Query: 174 --ARIIPYRGSWLDFEFDPKDNLFVRI-------DRRRKLPATIILRALNYTTEQILDLF 224 I P +G+ L + PKD ++I D + T +L+A T+ +IL +F Sbjct: 178 KICEIYPSKGT-LMLGYIPKDRHNIQIVARDSSGDNAQTFSVTTLLKAFGLTSAEILKIF 236 Query: 225 FEKVIFEIRDN--KLQMELVPERLRGETASFDIEANGKVYVEKGRR--ITARHIRQLEKD 280 + K E + E + F I ++ EK R + + + Sbjct: 237 NNEKEIRESLEIEKYAPEYIFENSQENEIIFKIYSDAHDIHEKADRRESNNKLKEEYIEQ 296 Query: 281 DVKLIEVPVEYIAGKVVAKDYID----------------------ESTGELICAANMELS 318 L+ + I V D ID + E+I E + Sbjct: 297 GSPLLSKLKQLIFNYVEKNDEIDALLHENKDVEDASFIKNNKKLYDEREEIINCIISEKA 356 Query: 319 LDLLAKLSQSGHKRIETL----------------------FTNDLDHGPYISETLRVDPT 356 + +L K IETL + + + L + Sbjct: 357 AKDIVELLGINIKNIETLRHLGKASYQIALQQHFFNKRLYDISSAGRYKFEKKLLLSERL 416 Query: 357 NDRLSALVEIYRM---MRPGEPPTREAAESLFENLFFSEDR------------------- 394 ++ A I + + P + + L + ++ Sbjct: 417 YQKVIANDIIDKKNNILIPKDTLITKEHIELIKKESRDKNIKWTKKINLLPTALESEIEQ 476 Query: 395 -YDLSAVGRMKFNR-------SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 + ++ K N + L+ D++ + ++ GE DDID Sbjct: 477 FLEYESIAVYKDNDLRDETTEIVGLASGCKLQTLTVADLVATTSYIYNLNYEIGEFDDID 536 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD--------------- 491 HLGN+R++ + E+ + + R+E+ + E+L++ D + + Sbjct: 537 HLGNKRLKLIHELLRARIATSMARIEKFINEKLAISDGSSNNITNVNDKGIDTELDREIE 596 Query: 492 -----------------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +IN K + VK+FF S QL QF+DQ NPL+E+T+KRRISA+G Sbjct: 597 ESDMSDEEKKKAISVKSIINTKQFQSLVKDFFNSHQLIQFIDQQNPLAELTNKRRISAMG 656 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGG++RE ++RDVH +HY R+CPIETPEG NIGLI SL+ A+ +E GF+ PY V Sbjct: 657 PGGISREDPNLDIRDVHHSHYSRICPIETPEGMNIGLIMSLASLAKVDENGFIVAPYYVV 716 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 DGVV ++ YL+A E+ NY+IA+++ LDE +++ V R +G + LFS ++VD++D Sbjct: 717 EDGVVKEDYKYLTAHEDDNYIIAESSVQLDENKRILDEQVVARYRGSTGLFSPNEVDFID 776 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 + +QVVS+ AS IPF+E+DD RALMG+NMQRQA P ++ P+VGTG E +A DSG+ Sbjct: 777 IVPKQVVSIAASAIPFIENDDGARALMGSNMQRQATPLIKPYAPIVGTGTEFKIAHDSGM 836 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 VAK GVV++VD+ +I+I+ + D++ D Y L KY +SNQ+TC NQ+P V +G Sbjct: 837 AVVAKNDGVVEFVDSQKIIIRNDNDKL-------DDYKLIKYRKSNQDTCNNQIPIVKVG 889 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V + + + DGP+ GELALG+N+ V + W GYNFED+I++SER+V +D FT+IHI Sbjct: 890 QRVHKSETIGDGPAMQNGELALGRNILVGYTTWRGYNFEDAIIISERLVDQDVFTSIHID 949 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 E TK G EEIT D+PNV + A LD GIV +GAEV GD+LVGK TP+G + Sbjct: 950 EHTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKTTPRGNVE 1009 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT---RDGVEKDKRALEIEEM 951 PE++LL+ IFG+K+ VKDSSL+V +G G V V+ +G E +EI ++ Sbjct: 1010 TAPEDRLLQTIFGDKSKTVKDSSLKVKHGQEGIVAAVKRIKSSDENGSELPDDVIEIIKV 1069 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + Q +K + G + V+ + D P D L Sbjct: 1070 YIVQKRKIQVGDKMAGRHGNKGIVSKVVPIQDMPF-LKDGTPLDIMLN 1116 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 184/497 (37%), Positives = 271/497 (54%), Gaps = 27/497 (5%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV- 928 IV +G V + +G +L +L + + +D+ + V V Sbjct: 885 IVKVGQRVHKSET-IGDGPAMQNGELALGRNILVGYTTWRGYNFEDAIIISERLVDQDVF 943 Query: 929 ----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 ID + + + + K + I+ G VLV Sbjct: 944 TSIHIDEHTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKTT 1003 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ P DR L+ D+ K + L ++ + ++ + G +L Sbjct: 1004 PRGNVETAPEDRLLQTIFGDKSKTVKDSSLKVKHGQEG--IVAAVKRIKSSDENGSELPD 1061 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 V++I+KVY+ KR+IQ GDKMAGRHGNKG++SK+ PI+DMP+ ++GTP+DI+LNPLGVP Sbjct: 1062 DVIEIIKVYIVQKRKIQVGDKMAGRHGNKGIVSKVVPIQDMPFLKDGTPLDIMLNPLGVP 1121 Query: 1105 SRMNIGQILETHLGMAAKGIGDK--INAMLKQQQEVAKLREF------IQRAYDLGADVR 1156 SRMNIGQILE HLG AA IG K I + Q + F ++ Y+ +++ Sbjct: 1122 SRMNIGQILELHLGYAAAEIGKKQLIQIAIDQLGYEKYISLFGINEIIAKKLYENISNLI 1181 Query: 1157 QKVDLSTFSDEEVMRLAENLRK--------GMPIATPVFDGAKEAEIKELLKLGDL---P 1205 + D +++ + L++ G+ I+TPVFDGA +I ++ ++ Sbjct: 1182 KHKQAKQAKDIDLIDVTIILKELGLSYDDIGIKISTPVFDGANHDDIVSIMNEANIDIEN 1241 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 G+ LYDGRTGE F+ ++VG YMLKL+H+VDDK+H+RS G YS +TQQPLGGK+Q Sbjct: 1242 NKGKQVLYDGRTGEPFDGLISVGLTYMLKLDHMVDDKIHSRSVGPYSKITQQPLGGKSQN 1301 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 GGQRFGEMEVWALEAYGAAY L E+LT+KSDDV GR + Y I+ G+ + GMPESF + Sbjct: 1302 GGQRFGEMEVWALEAYGAAYNLLEILTIKSDDVQGRNQAYNAIIKGHDVVADGMPESFKL 1361 Query: 1326 LLKEIRSLGINIELEDE 1342 L K+++ LG+ I +E + Sbjct: 1362 LTKQMQGLGLCITVETK 1378 >UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax=Nephroselmis olivacea RepID=RPOB_NEPOL Length = 1109 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 287/789 (36%), Positives = 431/789 (54%), Gaps = 45/789 (5%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L F I + +V V + R + +++ + + I+ + + Sbjct: 111 LMTSRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKHRRM-FQASIISNRGSWVRLETDV 169 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY--ISETLRVDPTNDRL--- 360 G + + + +L L G + + + + + L D++ Sbjct: 170 DGMIWVRMDKAKKISILIVLEAMGLSKKTIFRSLKSPEFLFKALQQLLAKKRWQDKVYEL 229 Query: 361 ------SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 AL +Y + P +P A + RYD+ VGR+K N+ L Sbjct: 230 IPQSTTDALFHLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLKLPVP 289 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 E L D + LI + G+G+VDDIDHL NRR+R GE+ ++Q R+GL R+ER Sbjct: 290 EHVHTLRPVDFLAATDYLIGLEYGRGQVDDIDHLKNRRVRCAGELIQSQLRIGLNRLERT 349 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 ++ R+S + ++N KP+ AA++EFFGS+ LSQFMDQ NPL+E+THKRR+S+LG Sbjct: 350 MQGRISRP-GELPGMSSLMNPKPVMAALREFFGSNPLSQFMDQTNPLAELTHKRRLSSLG 408 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+++RAG VR++HP+ YGR+CPIETPEGPN GLI S++ YA+ N+YG LE P+ +V Sbjct: 409 PGGLSQDRAGMAVREIHPSQYGRICPIETPEGPNAGLIGSMATYARLNQYGGLECPFYQV 468 Query: 595 TDGVVTDEI--HYLSAIEEGNYVIAQANS---------------NLDE--EGHFVEDLVT 635 +G V E +L+A +E + + LD + + Sbjct: 469 VEGKVLYEFGPIFLTAEQEDQVTVVAGDILDQRKLMVAVAEGRDPLDPAVRPTLPDRPLI 528 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 RS+ E S V+Y+ ++ Q++SV SLIPFLEHDDANRALMG+NMQRQAVP L+ Sbjct: 529 LRSRQEFHTGSFRDVNYVGIAPTQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLKT 588 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY---PGEAGIDIYN 752 + P++GTG+E VA D+G + G+V YVDA+RIV+ ++ ++ + Sbjct: 589 EAPIIGTGLEAQVAADAGGVVQSPFEGIVVYVDATRIVVSTSKSKLALSKKRKIHESNVF 648 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 L Y RSNQ TCI+Q P + L PV RGD+LADG ST G++ALG+N+ VA+MPW GYNF Sbjct: 649 LQVYQRSNQGTCIHQRPIIPLHTPVIRGDLLADGSSTSGGQIALGKNLLVAYMPWEGYNF 708 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA--LSKLDESGI 870 ED+IL+SER++ +D +T++HI+ ++ TKLGPEEIT I + + LDE GI Sbjct: 709 EDAILISERLIYDDLYTSLHIERYEVETQHTKLGPEEITKSIVHETDDKLPYRWLDERGI 768 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V GA V GD+L+GK+TPK E +LTPE +L+ AIFG++ +D+SLRVP GV G V+D Sbjct: 769 VMRGAWVEPGDVLIGKITPKEEKELTPELRLVYAIFGKRPKGFRDTSLRVPQGVRGRVVD 828 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V++ + ++ + + Q ++ + G + ++ + D Sbjct: 829 VRMIRDED-------TKVVHVYVCQQRQIQVGDKMAGRHGNKGIVSRIVPRQDMPY-LQD 880 Query: 991 KLPRDRWLE 999 P D L Sbjct: 881 GTPVDMVLN 889 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 162/479 (33%), Positives = 241/479 (50%), Gaps = 61/479 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVS 925 I+ + V GD+L G T G+ L LL A + + +D+ S R+ Sbjct: 666 IIPLHTPVIRGDLLADGSSTSGGQIALGK--NLLVAYMPWEGYNFEDAILISERLIYDDL 723 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----EELQILEAGLFSRIRAVLVA 981 T + ++ + + EI + + + L +E I+ G + VL+ Sbjct: 724 YTSLHIERYEVETQHTKLGPEEITKSIVHETDDKLPYRWLDERGIVMRGAWVEPGDVLIG 783 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 E+ + P R + K + L + ++ Sbjct: 784 KITPKEEKELTPELRLVYAIFGKRPKGFRDTSLRVPQGVRGRVVDVRMIRDEDT------ 837 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 K+V VY+ +R+IQ GDKMAGRHGNKG++S+I P +DMPY ++GTPVD+VLNPL Sbjct: 838 ------KVVHVYVCQQRQIQVGDKMAGRHGNKGIVSRIVPRQDMPYLQDGTPVDMVLNPL 891 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 GVPSRMN+GQ+ E LG+A + +G ++ + GA+ + + Sbjct: 892 GVPSRMNVGQVFECLLGLAGQRLGQQLKVRAFDEMY--------------GAEASRHLVY 937 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 + + E+ L D G+ RL DGRTG+ F Sbjct: 938 NKLHEAS-------------------------EVTGHHWLFDPNHPGKSRLIDGRTGDMF 972 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 ++ VT+G YMLKL H VDDK+HAR+TG YSL+TQQPLGG+++ GGQR GEMEVWA E + Sbjct: 973 DQAVTIGQAYMLKLIHQVDDKIHARATGPYSLITQQPLGGRSKRGGQRLGEMEVWAFEGF 1032 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 GAAYTLQE+LTVKSDD+ GR ++ +V G E G PESF V+++E+++L ++I + Sbjct: 1033 GAAYTLQELLTVKSDDMQGRNEIMSAMVQGRQLPEMGTPESFKVMIRELQALCLDIGIY 1091 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 157/387 (40%), Gaps = 36/387 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + RKD P +P L+SIQ DSF F+E+ GL V P+ Sbjct: 3 QNLQRKDSQWTP--FILPDLISIQRDSFLLFLER------GLATELSHVTPLTGSHFRIT 54 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L YRL P +QE + +YSA L V + E ++ + Q V+MG+I Sbjct: 55 LCSHGYRLKRPKVSIQEAVYQATSYSAALYVNV-----ETNQSNLGTQETQIQSVWMGDI 109 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT G F+ING+ RV+V+Q+ RSPG++F + H + ++ A II RGSW+ E Sbjct: 110 PLMTSRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKH---RRMFQASIISNRGSWVRLE 166 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL-----FFEKVIFEIRDNKLQMELV 242 D ++VR+D+ +K+ I+L A+ + + I F K + ++ K + V Sbjct: 167 TDVDGMIWVRMDKAKKISILIVLEAMGLSKKTIFRSLKSPEFLFKALQQLLAKKRWQDKV 226 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 E + ++ + + T R L + + V + + K Sbjct: 227 YELIP-QSTTDALFHLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLK 285 Query: 303 DE--------STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + + A + + L+ + I+ L + + ++ Sbjct: 286 LPVPEHVHTLRPVDFLAATDYLIGLE----YGRGQVDDIDHLKNRRVRCAGELIQSQLRI 341 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAA 381 N + R+ RPGE P + Sbjct: 342 GLNRLERTMQ--GRISRPGELPGMSSL 366 >UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Tax=cellular organisms RepID=RPOB_PHATR Length = 1389 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 339/1339 (25%), Positives = 553/1339 (41%), Gaps = 213/1339 (15%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD 81 + YL Q +S F++ L + +S +L +L F Sbjct: 199 YSIKYLKQKQQNSTFYFLQSFK-----LYRVASKLLSSKSKQRVIQLFLKWLKLKNKSF- 252 Query: 82 VQECQIRGVTYSAPLRVKL--RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 E Q Y L L+ YE T K +++ + + + ++N Sbjct: 253 --EFQDEKQIYLIKYFNFLLTSLMKYEILQSSLTTKFNEDKTILLSKF----TKSNAILN 306 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL----DFEFDPKDNLF 195 +++ I++ + +S L+ P WL +F F K Sbjct: 307 LSDKQIINLSMIYNKLIINSQTLAQMELNSNLFLITKEPR--EWLTEMSNFLFLKKQISK 364 Query: 196 VRIDRRRKLPATII-----LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 + T + + + ++ L F K + ++ + + Sbjct: 365 ATFTLKSFQELTQLQNLKPAIYFSISLKEQLKYVFGKNKLTYKSDRHKYLKTKTQFLLYR 424 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +I+ N ++ TA I + + + + K K D E+I Sbjct: 425 KDHEIKTNYNKKYDEKDLYTATVIPEYGSWIRIGFQRNTKINSYKYPLKSQED----EVI 480 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + +L L + G +E + Y ++ L ++ L E Sbjct: 481 IQLDKINQKPVLYLLKEMGLTDLEIYQNLEYADFFYFNKPLLINSKR-----LSEPLSRF 535 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 G + +E + F Y L VGR+K N L + E ++ +DI + Sbjct: 536 NLGLSYFKNISE---FSRIFDPTYYRLGRVGRLKINSRLNLKMSERLQTITYEDIFAITD 592 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 KLI++ K DDIDHL NRR+RSVGE+ +N FR+G R+ R ++ + + D L+ Sbjct: 593 KLINLTISKTVQDDIDHLKNRRVRSVGELLQNLFRIGFQRLGRKLRNQTNKIDSGQLLSF 652 Query: 491 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 +++NA ++EFFGSSQLSQ++DQ NPLS +TH+RR+S LGPGG R+R F VRD+ Sbjct: 653 NIVNAS-----IREFFGSSQLSQYLDQTNPLSSLTHRRRVSGLGPGGFDRDRISFAVRDI 707 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV--TDEIHYLSA 608 HP+HYGR+CPIETPEG N+GLI SL+ A+ N+ GFLETP+ +V +G V T + YL+A Sbjct: 708 HPSHYGRICPIETPEGQNVGLIASLTTCARVNKSGFLETPFWRVINGKVVKTGQPVYLTA 767 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 E D+ ++ + + + Sbjct: 768 DIE---------------------------------------DFYKIAPADIATNKDNY- 787 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 + + +P + T E S + V+ ++ + + Sbjct: 788 ----------------LTKNVIPVRYKQDFVNVTPSEVDFIAISTIQVVSVAASLIPFFE 831 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 + M + Q P V G + D Sbjct: 832 HDDANRALMGSNMQRQSVP---------------LLLPQKPIVGTGL---ENQIAIDS-- 871 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 + ++ +++ ++ + K Sbjct: 872 --------------------------GMTLN--SYSNGVVSSVTANKIVVNDKTGKRLTY 903 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 ++ + + + ++ IV+ G +V G IL ++L+ + +L Sbjct: 904 KLQKYLRSNQQTCINH---RPIVWKGEQVKSGQIL-TDGPAITSSELSLGQNVLIGYMPW 959 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE------ 962 + + +D+ L ++ ++ VFT +E+ K ++ L++ K++ Sbjct: 960 QGYNFEDAIL-----INERLVYDDVFTSIHIERYKIEIDRNSDTLERTTKNIPNLNPREI 1014 Query: 963 ----ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 + I+ G F R +LV + ++LP + L + K + Sbjct: 1015 RHLNDDGIVTVGTFVRPGDILVGKVISNNTSEQLPESKLLRAIFGAKAKGVKDNSYRMSD 1074 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 E E +R K+T + + V++A R+IQ GDK+AGRHGNKG+IS+ Sbjct: 1075 GEYGRVIETVTFNRRTKLTYKFE-------KIYVFIAQIRKIQVGDKIAGRHGNKGIISR 1127 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I +DMP+ +GTP+DI+LNPLGVPSRMN+GQ+ E LG+A + + + + Sbjct: 1128 ILSRQDMPFLPDGTPLDILLNPLGVPSRMNVGQLYECLLGLAGDKLNARFKILPFDEMYG 1187 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 ++ + A + + Sbjct: 1188 LEISRILINKKLRQASIAKNES-------------------------------------- 1209 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L + G++ L DGRTG++FE PVTVG YMLKL HLVDDKMHAR+TG YSL+TQQP Sbjct: 1210 -WLFNPYAPGKMVLIDGRTGKEFENPVTVGNAYMLKLIHLVDDKMHARATGPYSLITQQP 1268 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 L GKAQ GGQRFGEMEVWALE +GAA+TL+E+LT+KSDD+ GR + IV G + G Sbjct: 1269 LRGKAQHGGQRFGEMEVWALEGFGAAFTLKELLTIKSDDMQGRNETLNAIVKGQQIPKFG 1328 Query: 1319 MPESFNVLLKEIRSLGINI 1337 +PESF VLL E+RS+G+++ Sbjct: 1329 IPESFKVLLHELRSIGLDM 1347 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 86/509 (16%), Positives = 181/509 (35%), Gaps = 46/509 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN--SELQYVSYRLGEPVFD 81 +P L++Q SF FI Q GL IQ +S N + Y L +P + Sbjct: 7 LPDFLAMQRISFCWFITQ------GLTEELALFSRIQDFSQNTEYVMFGEEYSLIKPSYS 60 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY-MGEIPLMTDNGTFVING 140 + + Y A L + + + V I+ + + +PLMT + TF+ING Sbjct: 61 LLIARKYSGNYRAQLVIPIEVRN-------KVVNSIRYHNQFPIITLPLMTTDATFIING 113 Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSG-KVLYNARIIPYRGSWLDFE-FDPKDNLFVRI 198 ERVIVSQ+ RSPGV+F+ +K + + K + I R E F + +LF + Sbjct: 114 CERVIVSQIIRSPGVYFEKNKNQKTRNQFKKKLSTDINKLRSFIPSGEAFISEFDLFFPL 173 Query: 199 DRRRKLPATIILRALN-YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 P + + + + I + + + +++ + R + ++ Sbjct: 174 PTSIYDPVKKKKKIIPHWQSNSIYYYSIKYLKQKQQNSTFYFLQSFKLYRVASKLLSSKS 233 Query: 258 NGKVY--VEKGRRITARHIRQLEKDDVKLIEVP----VEYIAGKVVAKDYIDESTGELIC 311 +V K ++ + ++ + LI+ + +++ + + Sbjct: 234 KQRVIQLFLKWLKLKNKSFEFQDEKQIYLIKYFNFLLTSLMKYEILQSSLTTKFNEDKTI 293 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + + + LS + ++ + + +++ E M Sbjct: 294 LLSKFTKSNAILNLSDKQIINLSMIYNKLIINSQTLAQMELNSNLFLITKEPREWLTEMS 353 Query: 372 PGEPPTREAAESLFENLFFSEDR----------YDLSAVGRMKF----NRSLLREEIEGS 417 ++ +++ F F E + +S ++K+ N+ + + Sbjct: 354 NFLFLKKQISKATFTLKSFQELTQLQNLKPAIYFSISLKEQLKYVFGKNKLTYKSDRHKY 413 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER--AV 475 ++ I K + D+ D +V + R+G R + + Sbjct: 414 LKTKTQFLLYRKDHEIKTNYNK-KYDEKDLYT----ATVIPEYGSWIRIGFQRNTKINSY 468 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKE 504 K L + + ++ D IN KP+ +KE Sbjct: 469 KYPLKSQEDEVIIQLDKINQKPVLYLLKE 497 >UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular organisms RepID=B2IM40_STRPS Length = 824 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 314/583 (53%), Positives = 414/583 (71%), Gaps = 11/583 (1%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DI+ M +++ G G VDDIDHLGNRRIR+VGE+ NQ R+GL R+ER V+ER+ Sbjct: 1 MTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM 60 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 S+ D + L PQ +IN +P++AAVKEFFGSSQLSQFMDQ+NPLSE++HKRR+SALGPGGLT Sbjct: 61 SVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLT 120 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD--G 597 R+RAG+EVRDVH THYGR+CPIETPEGPNIGLIN+LS Y N+YGF++TPYRKV G Sbjct: 121 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETG 180 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VVT+EI +L+A EE Y +AQANS L+E+G F E +V R +G + + + VDYMDVS Sbjct: 181 VVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQGVNQEYPANIVDYMDVSP 240 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +QVV+V + IPFLE+DD+NRALMGANMQRQAVP + P VGTGME A DSG + Sbjct: 241 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPYVGTGMEYQAAHDSGAAVI 300 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+ G V Y DA ++ ++ + +D+Y++ K+ RSN T NQ V +G+ V Sbjct: 301 AQYDGKVTYADADKVEVRRED-------GSLDVYHIQKFRRSNSGTAYNQRTLVKVGDVV 353 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+GD +ADGPS + GE+ALGQN VA+M W GYNFED++++SER+V++D +T++H++E Sbjct: 354 EKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYE 413 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 +RDTKLGPEEIT +IPNVGE AL LDE GI+ IGAEV GDILVGKVTPKGE L+ Sbjct: 414 SETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSA 473 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQA 956 EE+LL AIFG+K+ +V+D+SLRVP+G G V DV++FTR +G E + + + Q Sbjct: 474 EERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQK 533 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 +K + G + ++ + D P D L Sbjct: 534 RKIKVGDKMAGRHGNKGVVSRIVPVEDMPY-LPDGTPVDIMLN 575 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 180/484 (37%), Positives = 257/484 (53%), Gaps = 76/484 (15%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V +G V GD + G GE L + + A + + +D+ + +S + Sbjct: 346 LVKVGDVVEKGDFIADGPSMENGEMAL--GQNPIVAYMTWEGYNFEDAVI-----MSERL 398 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + V+T +E+ + ++ ++ +++ +E+ I+ G + + Sbjct: 399 VKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDI 458 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + D +R L D+ ++ + L + + K+ + Sbjct: 459 LVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV----N 514 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L GV +V+VY+A KR+I+ GDKMAGRHGNKGV+S+I P+EDMPY +GTPVDI+L Sbjct: 515 GDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIML 574 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNI G + L Sbjct: 575 NPLGVPSRMNI---------------GQVMELHLGMAARTL------------------- 600 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 G+ IATPVFDGA ++ +K + + + LYDGRTG Sbjct: 601 --------------------GIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTG 640 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F+ V+VG MYM+KL+H+VDDK+HARS G YS VTQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 641 EPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWAL 700 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGA+ LQE+LT KSDD+NGR K Y+ I G +PG+PESF VL+KE++SLG+++ Sbjct: 701 EAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMR 760 Query: 1339 LEDE 1342 + DE Sbjct: 761 VLDE 764 >UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=B3L0J5_PLAKH Length = 1371 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 215/1270 (16%), Positives = 416/1270 (32%), Gaps = 208/1270 (16%) Query: 187 EFDPKDNLFVRIDRRRKLPATIILRAL-----NYTTEQIL---DLFFEKVIFEIRDNKLQ 238 + ++ RI+ R +P L+++ +I + F++ + I + + Sbjct: 194 QILKDKFIYERINLGR-IPLM--LKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGGEK 250 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + + ER+ + + G R + + + + Sbjct: 251 VLVAQERMAHNFIYVFKKKQPSKF---GWVAEIRSQMERSQATSAFSVKMKTKTGSRGSS 307 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI---SETLRVDP 355 + L L L + + I D + I ETL Sbjct: 308 VRTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETLEECI 367 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 ++ P +RE + L + L +G Sbjct: 368 DYPTQDICLDFIGKRGPTVGASREKRILYAKELL---RKEVLPHMG-----------TGP 413 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 G I ++ +L+ G+ + DD DH G +R+ G + + F ++ + V Sbjct: 414 GVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDV 473 Query: 476 KERLSLGDLDTLMPQDMI----NAKPISAAVKEFFGSSQL-------------SQFMDQN 518 K L +D P D+ + I+ ++ + +Q +++ Sbjct: 474 KRVLQRQ-IDNNKPFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRL 532 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 S ++H RR++ L RE + R +H TH+G +CP ETPEG ++GL+ +LS+ Sbjct: 533 TYSSCLSHLRRLNT----PLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLM 588 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 + G + + + + V N G +V + Sbjct: 589 CDISV-GTSTNNIFEFLLEWGLESLDEVPPQLMKEKVKLFLN------GKWVGCFNQIDN 641 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 E+ R + D ++ + F + A R L ++ + Sbjct: 642 LIETLYELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKN-------VKGENK 694 Query: 699 LVGTGME---RAVAVDSGVTAVAKRGGVVQYVDASRIVI------------------KVN 737 L T ++ + G+++Y+D Sbjct: 695 LKLTKEHVKNMMAYPETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYHNNYT 754 Query: 738 EDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------ 788 E++P I + + +S +NT + M ++G V ++ D + Sbjct: 755 HCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYP 814 Query: 789 ------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 EL G N VA M + GYN EDS+++++ + F ++ + Sbjct: 815 QRPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTY 874 Query: 837 ACVSRDT-----KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 + + + + N+ +KLD G++ G V G DI++GKV+P Sbjct: 875 TSEEKQQGSLIIESFEKPSIRYVKNLKRGDYTKLDNDGLIAPGIRVLGDDIIIGKVSPNI 934 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS----GTVIDVQVFTRDGVEKDKRALE 947 E + + + I S +S G G+V++ + G Sbjct: 935 EDEDDIVIQRMPNIQMGYNSG-ASTSNGFMIGKESSAGGSVLNGSASSVCGSVSSSPYSP 993 Query: 948 IEE--MQLKQAKKDLSEELQILEAG-------LFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + + D + +G + + + + + + Sbjct: 994 STMGGSNMMDSMPDSPVSDRYSSSGPVGSATVGPASVSSSTPSNTTIFRSGNTISSVNSP 1053 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD----------LAPGVLK 1048 + G T + + K+ + + ++ K Sbjct: 1054 QYGTTIVSGSTKDDLEIPTLTISTSNILKQYKKDCSLSLRENENGVIDTVMLSSNSRGNK 1113 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 KV + R Q GDK A RHG KG I EDMP+ +GT DI++NP VPSRM Sbjct: 1114 FAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSDGTFPDIIMNPHAVPSRMT 1173 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 IG ++E G A G + +A + V ++ + + + Sbjct: 1174 IGHLVECLAGKVAAIEGGEGDATPFSKITVQEISQRLHNLGYEKYGNDVLYNG------- 1226 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 +G+ + + +G Sbjct: 1227 -------------------------------------HNGK----------MLKSKIFIG 1239 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 Y +L H+V+DK+HARS G +++T+QP G+++ GG RFGEME + ++G+A L+ Sbjct: 1240 PTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLK 1299 Query: 1289 EMLTVKSD----DVNGRTKMYK------------NIVDGNHQMEPGMPESFNVLLKEIRS 1332 E L +SD V + + + +P + +L +E+ + Sbjct: 1300 ERLFEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYIPYACKLLFQELMT 1359 Query: 1333 LGINIELEDE 1342 + I +L E Sbjct: 1360 MAIYPKLVLE 1369 >UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN02_HODCD Length = 1267 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 312/876 (35%), Positives = 462/876 (52%), Gaps = 49/876 (5%) Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + + V + F SS Q+ DQ N LSE++H+ R++ +G GG+ A RDV H Sbjct: 411 QRKLQPVVSKLFRSSSACQYADQVNSLSELSHRLRLTCMGGGGVNARSADTRSRDVRKWH 470 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G+VCPIE+PEG +IGL+ L++YA+ G + T + K G++++++ L+ + + Sbjct: 471 FGKVCPIESPEGQSIGLVLQLAMYARVEASGHIATMFAKSRRGLISNQMLALNCFSQQAF 530 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 IA ++ V + ++ + VD + Q+ S +LIPFLEH+ Sbjct: 531 SIAIFGASP------ASARVMSFKACKPAMCAISAVDLWPATNAQLFSPAVNLIPFLEHN 584 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALM +NM +QA+P PLVGTG ERAV + +G +A + VV DA+++V+ Sbjct: 585 DATRALMASNMLKQALPLAEPQAPLVGTGEERAVMLAAGHNLLADQHCVVVRADAAQVVV 644 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 P Y + + TRSNQ C V + ++ GDV+A+ S+D GE+ Sbjct: 645 YC------PCADAYKAYLVPEPTRSNQGVCRRLRVVVEPNQVLKAGDVVAECQSSDNGEM 698 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 +LG N+ VAFM WNG+N+EDSIL+SE V+ ++H+ +L T G E +T ++ Sbjct: 699 SLGANLLVAFMCWNGFNYEDSILLSEAVIARGLLDSLHVLKLKAKVLRTAFGDELVTNEL 758 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP------------------------- 889 P V E + L E G+V +G V D+LVGK++P Sbjct: 759 PMVAEKHKAHLSEQGVVSVGDTVCEHDVLVGKLSPVDYADSLDVATADAVATAGADDGGD 818 Query: 890 -KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG-VSGTVIDVQVFTRDGVEKDKRALE 947 L GE VK +SLRVP G +VIDV + + + +L Sbjct: 819 DGDSGGDDGLSVTLVNDMGENIRYVKSTSLRVPTGVECASVIDVSFASCEA----EASLG 874 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + DL + G ++ AV G A K LE ++ + Sbjct: 875 ESALDACVKELDLIQRRYARRLGKVAKWAAVGFDG---ANACSKPDHGLVLEAKSSNAQA 931 Query: 1008 QNQLEQLAEQY-DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q + L + Y E+ F + A +I+ + VL + V L V++ I+ GDK+ Sbjct: 932 QQAISLLRQLYACEVDALFARASAAASARISCDGPNSASVLDEITVTLLVRKSIKAGDKV 991 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 +GRHGNKGVIS++ P EDMP+ +GTP+DIVLNPL VPSRMNIGQILE LG+ +G Sbjct: 992 SGRHGNKGVISRVAPAEDMPHLADGTPIDIVLNPLSVPSRMNIGQILEARLGLVGLALGA 1051 Query: 1127 KINAMLKQQQEVAKLRE-FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + ++ Q E ++ A + + +DL S V+ LA L +G+ + P Sbjct: 1052 EFERVVDACQVADASSERELEGAKSKISSLFPSLDLRRASASRVLALARKLSRGVGLECP 1111 Query: 1186 VFDGAKEAEIKELLKLGD-LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 F EA IK L + L SG+++L+DG TG F++ VG +Y+LKLNHLVDDKM+ Sbjct: 1112 PFCHLSEACIKALCRRAGALDASGRLQLFDGVTGLPFDQQTAVGSIYVLKLNHLVDDKMY 1171 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 AR+TG YS+VTQQPL GKA GGQR GEMEVWAL++YG +Y L+E LT K DDV R M Sbjct: 1172 ARATGPYSMVTQQPLKGKANKGGQRLGEMEVWALQSYGVSYMLKEALTAKCDDVAARHVM 1231 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +I ++E ES +L++E+ SL ++ E Sbjct: 1232 ASSIAGCAPRVESSWGESLLLLVREMCSLCVDFRFE 1267 >UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acholeplasma sp. DM-2009 RepID=B9VQ44_9MOLU Length = 1223 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 331/840 (39%), Positives = 469/840 (55%), Gaps = 74/840 (8%) Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 ++ D +E E + + + G+V VE G +T + L + L Sbjct: 272 DLYGKIDGITPIEYAKEIIVEQNIVNLL--TGEVIVEAGSVLTPEVRQTLLVNREGLNYA 329 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS--QSGHKRIETLFTNDLDHGP 345 + Y+ + D + L E++ ++ ++ + K +E L + Sbjct: 330 SLRYLRT-FIDHDILLADDSVLFYE-GTEVTDEVYFQIYENKQNLKSLEDLKYATVYAKQ 387 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF---FSEDRYDLSAVGR 402 I + L ++ + + + +M G T E L N + +Y L A + Sbjct: 388 DI-DILEDYRRHESVESQRDHKPIMYCGYEITDENLLELQINRNKLDENVIKYFLVAGKK 446 Query: 403 MKFNRS-----------------------------LLREEIEGSGILSKDDIIDVMKKLI 433 +F R + + E ++ DII + + Sbjct: 447 GEFYRKESQRRATFVEVIQIKAAKDAKDDKDVIELIGHDSRETRLHITVSDIIASISYYL 506 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 ++ +G G++DDIDHL NRR+R +GE+ +NQFR+GL ++E+ +K+++S D Q +I Sbjct: 507 NLYDGVGKIDDIDHLSNRRLRLIGELLKNQFRIGLAKLEKNIKDKMSTADAKEASLQSLI 566 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 N KP++A++KEFFGSSQLSQFMDQ NPL+E+T KRR+SALG GGL R+RAG EVRDVH + Sbjct: 567 NIKPLTASLKEFFGSSQLSQFMDQINPLAELTQKRRVSALGTGGLARDRAGVEVRDVHES 626 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG-----VVTDEIHYLSA 608 HYGR+CPIETPEGP+IGLI+SL+ YA+ ++YGF++TPY KV VT E Y +A Sbjct: 627 HYGRICPIETPEGPSIGLISSLASYAKVDQYGFIQTPYLKVDKSDPEHPFVTSEYVYFTA 686 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 EE +++IA A+S DE GHF + V R G++ + +VDYMDVS +Q+VSV S I Sbjct: 687 GEEEHHIIASADSQTDENGHFKTETVIGRFMGDTRSYPSKKVDYMDVSPKQIVSVATSSI 746 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 PFLEHDDA+RALMGANMQRQAVP L D P+VGTG+E A DSG VA GVV Y D Sbjct: 747 PFLEHDDASRALMGANMQRQAVPLLVPDSPIVGTGIEYRSAKDSGSAIVAHVDGVVTYAD 806 Query: 729 ASRIVIKVNEDEMYPGEAG----------------------------IDIYNLTKYTRSN 760 +IVI V + G + Y LT++ RSN Sbjct: 807 GRKIVIAVKPEASIKTTRGKLVYDKDTEFNWEAYDQIRQAKMTDLLRFETYPLTQFLRSN 866 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q+T I Q P V +GE +++GDV+ADGPS + GELALG+N+ VAFM W GYN+ED++++SE Sbjct: 867 QDTSILQKPIVQIGEKIDKGDVIADGPSINKGELALGRNVVVAFMTWEGYNYEDAVIMSE 926 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +V+ D +T+IHI E SRDTKLG EEIT +IPNV AL LD+ G+V G EV G Sbjct: 927 DLVKNDVYTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLDDRGVVIPGTEVKEG 986 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGV 939 DILVGK+TPKG+T+ TPEEKLL+AIF EKA +V+D+SL+VP+G G V +Q F++ +G Sbjct: 987 DILVGKITPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGGIVHSIQYFSKSNGD 1046 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 E E+ + + + +K + G I +L + D P D L Sbjct: 1047 ELGPGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMPY-MADGTPVDIMLN 1105 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 131/408 (32%), Positives = 189/408 (46%), Gaps = 66/408 (16%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV IG ++ GD++ G KGE L ++ A + + +D+ + + V V Sbjct: 876 IVQIGEKIDKGDVIADGPSINKGELALGR--NVVVAFMTWEGYNYEDAVIMSEDLVKNDV 933 Query: 929 -----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 ID + K + E + ++ ++ G + +LV Sbjct: 934 YTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLDDRGVVIPGTEVKEGDILVGKI 993 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + P ++ L+ ++ ++ + L + + +K + GD+L Sbjct: 994 TPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGGIVHSIQYFSK----SNGDELG 1049 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV ++++VY+ KR+I GDKMAGRHGNKGVISKI P EDMPY +GTPVDI+LNPLGV Sbjct: 1050 PGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMPYMADGTPVDIMLNPLGV 1109 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNIGQ+LE HLGMAAK +G K+ + L + + A + D Sbjct: 1110 PSRMNIGQVLEIHLGMAAKKLGIKVATPVFDGLTQLDLEQVMAEAGMASDGKQVLYDG-- 1167 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 R G P V G +Y Sbjct: 1168 -------------RTGEPYENRVSVG---------------------VMY---------- 1183 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 M+KL+H+VDDK+HARS G Y+LVTQQP+GGKAQ GGQRFG Sbjct: 1184 --------MIKLSHMVDDKLHARSVGPYTLVTQQPMGGKAQNGGQRFG 1223 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD- 354 +Y + + + L A L G IE + + + ET + D Sbjct: 1 GAWLEYEMGAKNIFYGKLDRSKKVSLTALLQAFGFDGIEEIKKLFPTYKKMLDETFKKDE 60 Query: 355 --PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 +A+ ++Y +R GE AA+ F RYDL VGR KF + L Sbjct: 61 KEGILSSDTAIEDLYSKLRQGEKIPVSAAKEFVRTRLFDSRRYDLEEVGRYKFKQKLDI 119 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 31/284 (10%) Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD------ 234 G+WL++E K+ + ++DR +K+ T +L+A + + + F + + Sbjct: 1 GAWLEYEMGAKNIFYGKLDRSKKVSLTALLQAFGFDGIEEIKKLFPTYKKMLDETFKKDE 60 Query: 235 -------NKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLI 285 + +L + +GE + R R K + + Sbjct: 61 KEGILSSDTAIEDLYSKLRQGEKIPVSAAKEFVRTRLFDSRRYDLEEVGRYKFKQKLDIT 120 Query: 286 EVPVEYIAG---------KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 + G A+D ID T ++ A + + + + LSQ + L Sbjct: 121 NRLMTIAQGITAPNQPAIYKYAQDVIDPVTKAILVAKDQIVDVASVELLSQHR----DAL 176 Query: 337 FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYD 396 L + + + S L E Y P L Sbjct: 177 RKVVLSKESSLQNESENEVFGIKTSDLFEQYAKDDILYIPADAKEAGLLVPARTKITPEI 236 Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 + + + + N ++++ G+ ++ KD KL+ GK Sbjct: 237 RNLIYKNRNNLVFQKKDVNGNNVVEKD---ASKAKLLVDLYGKI 277 >UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax=Ostreococcus tauri RepID=RPOB_OSTTA Length = 1088 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 284/874 (32%), Positives = 428/874 (48%), Gaps = 55/874 (6%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R + R FF G++ S R I F KD F ++ Sbjct: 22 RYFLETGIREELDFFSPIVGQSLGSSSKRPTDRFIS-------VSFHSKDFYF----KKP 70 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 ++ L ++ + + + L E +F + + +V Sbjct: 71 HYTPQEAVQKLGTYKSSLIVPVHVYSKYLNLNATFPVAFCDLPLMTEHGTFILNGSPRVI 130 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 V + R +++ + V +++ + + G + + + + Sbjct: 131 VHQIVRCPGVYLKPQFDKQGNRTHL-VSFLSAYGSWLRFETDKKGVVFAHIDNLRKVPVT 189 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRV-DPTNDRLSALVEIYRMMRPGEPPTREAA 381 L G + L + + TL+ D A++ + + P P T Sbjct: 190 VFLQALGFSMDTIVGA--LKYPEALDPTLKEVDWKLTTDEAILLLMSRLFPNRPATVLRG 247 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 N FF+ RY LS VGR + N+ L+ D + + L+ NG+ E Sbjct: 248 RKFLFNQFFNPRRYSLSDVGRKRVNQKFRMRSKTKHLTLTPQDALAALDYLLRCENGETE 307 Query: 442 V-DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP------QDMIN 494 DDIDHL NRR R GE+ + QFR+GL R+ER + R+S ++ P +I Sbjct: 308 FLDDIDHLKNRRARLAGELIQTQFRLGLNRLERVIYNRISDENILRKTPGALGSLNSLIR 367 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + +++ +EFFGS+QLSQFMDQ NPL+EITHKRR+S+LGPGGL R+RAG VR +HP++ Sbjct: 368 TQVLASVFQEFFGSNQLSQFMDQTNPLAEITHKRRLSSLGPGGLNRDRAGLIVRGIHPSY 427 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE---IHYLSAIEE 611 YGR+CPIETPEG N GL+ S++ + Q N+ GFLE+PY K+ T + LSA E Sbjct: 428 YGRICPIETPEGKNAGLVGSIATFTQINKNGFLESPYYKLISESNTPDRNGFFLLSAFYE 487 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + V+AQ + +L + R+K + + + +++++ + Q +S+ SLIPFL Sbjct: 488 EDTVVAQGDVDLS------NFRIPTRNKSQFTENTVQEINFLGLCPIQFMSIATSLIPFL 541 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMG+NMQRQAV LR+++P VGTG+E V D G T VAK+ + YVDA R Sbjct: 542 EHDDANRALMGSNMQRQAVSLLRSERPFVGTGLEAHVTRDIGATIVAKQNSYISYVDAQR 601 Query: 732 IVI---------------KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 I ED + + LT Y RSNQ+TC+N P V Sbjct: 602 IDYFTPVIGDTNLIDYQNLTAEDVFASNQFKHNTIWLTSYQRSNQDTCLNHKPLVEANTW 661 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 VE GD LAD +T GELALG+N+ + +MPW GYNFED++LVSER+V +D FT+IHI Sbjct: 662 VEAGDCLADNAATAKGELALGRNILIGYMPWEGYNFEDAVLVSERLVYDDVFTSIHISRY 721 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 + + G E T + LDE G+V IG V GD+LVGK++P+ ++ Sbjct: 722 EVSTARLREGQEYFTNQVDRN-----QYLDEFGVVKIGTWVEAGDVLVGKISPQPDSDND 776 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV-FTRDGVEKDKRALEIE---EMQ 952 PE +LLRAIFG A + K +S + +GVSG ++DV+ F R + ++E + Sbjct: 777 PESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDVRCEFKRQTKNIEDESIESTGSVYVY 836 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 L + ++ + G + +L + Sbjct: 837 LVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPY 870 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 163/476 (34%), Positives = 234/476 (49%), Gaps = 53/476 (11%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V V GD L T KGE L +L + + +D+ L VS + Sbjct: 655 LVEANTWVEAGDCLADNAATAKGELALGR--NILIGYMPWEGYNFEDAVL-----VSERL 707 Query: 929 IDVQVFTRDGVEKDKRALEI-----EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 + VFT + + + + E + + +E +++ G + VLV Sbjct: 708 VYDDVFTSIHISRYEVSTARLREGQEYFTNQVDRNQYLDEFGVVKIGTWVEAGDVLVGKI 767 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 D P R L + + + + E KR+ D+ Sbjct: 768 SPQPDSDNDPESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDVRCEFKRQTKNIEDESI 827 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 V VYL KRR+Q GDK+AGRHGNKG++S I P DMPY ++G +D+VLNPLGV Sbjct: 828 ESTGS-VYVYLVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPYLQSGKALDMVLNPLGV 886 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMN+GQI E LG+AA + + + GA+V + Sbjct: 887 PSRMNVGQIFECLLGLAANTLKQNFKVLPFDEM--------------HGAEVSRGFVYHY 932 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 ++ + L + G+ ++DGRTG F++ Sbjct: 933 LYKSRLLTQQK-------------------------WLFKPNSPGKSIVFDGRTGLNFDQ 967 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 PVTVGY Y+LKL HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR GEMEVWALE +GA Sbjct: 968 PVTVGYPYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFGA 1027 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AY LQE+LT+KSDD+ GR + + +++ G + G+PESF VL+ E+R L +++ + Sbjct: 1028 AYVLQELLTIKSDDMIGRNRAFMSMIRGTLLPKSGIPESFKVLVSELRGLCLDMSI 1083 >UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEK8_PEDMN Length = 1157 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 279/877 (31%), Positives = 426/877 (48%), Gaps = 93/877 (10%) Query: 212 ALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEANGKVYVEKGRR 268 AL Y LF + +++ + V L + F + +V + + R Sbjct: 68 ALLYGKSYASRLFLPVQLTNQVTGEIKFQWVLLGTLPLLTKRGHFILNGCPRVVINQLIR 127 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 + ++ + I ++I + +++ + + +L L Sbjct: 128 SPGVYYQKRLDSQKRDI-FYADFICERGAWLRIEMDTSQRIWARMKRTPKIPVLILLQSM 186 Query: 329 GH----------------------------KRIETLFTNDLDHGPYISETLRVDPTNDRL 360 G K + L + D L Sbjct: 187 GMSLQTIFSSTSQRTILAKSLLPYEQKGKTKTLPKLVKAQNPLLLVRRHPVSQDTALKVL 246 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 SAL I + E + F + YDL +GR++ N+ L Sbjct: 247 SAL--IQARTKKEILVNSEMGKKFLMKKFRNPRSYDLGFIGRLRLNKRFGLSIATSYRQL 304 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 + +DI + LI + G +DDIDHL NRR+RS+GE+ + Q + L+R+E+ +++R S Sbjct: 305 TAEDIFHSVNLLISVSQGVASLDDIDHLENRRVRSIGELLQIQLGLALLRLEKMIRDRSS 364 Query: 481 L-----GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 + I+ K ++ A++EFFGSS LSQF+DQ NPL+E+THKRR+++LGP Sbjct: 365 FLLENNVSSVAKDIRSFISTKALNGAMREFFGSSPLSQFLDQTNPLAELTHKRRLTSLGP 424 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 G++RE AG VR +HP+HYGR+CPIETPEG N GL+NSL+VY++ ++ GF+++P+ + Sbjct: 425 SGVSRETAGMAVRGIHPSHYGRICPIETPEGQNAGLVNSLTVYSRVDQNGFIQSPFYLLN 484 Query: 596 DGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 +G + E + +LSA +E + I + + + G D + R E R +D + Sbjct: 485 NGQIQKEANLTFLSAKDEMSKTIIPGDIHFNSLGFIENDSLPSRKNQEFVRQQRGNIDLI 544 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 S Q++SV SLIPFLEHDDANRALMG+NMQRQAVPTL A++P VGTG+E + D G Sbjct: 545 ATSPLQMISVATSLIPFLEHDDANRALMGSNMQRQAVPTLYAERPRVGTGLESKIVTDIG 604 Query: 714 VTAVAKRGGVVQYVDASRIVIKVN------------------------------------ 737 + G V YVD+ +I+I+ Sbjct: 605 HIVQTRWSGYVSYVDSQKIIIQSFVKHSETFLPTQSIRFLETVSTSKKYSSSLKTDSIEK 664 Query: 738 ----------EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 + ++ E Y L Y+ SNQ+T Q P VS G+ VE GD+LADG Sbjct: 665 VFLKSKPGELKTKLEEYEFKTVEYLLENYSGSNQSTFFVQKPIVSEGDWVEAGDILADGS 724 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 +++ GELALG N+ VA++PW G+NFED+IL+SER+V +D +T++HI++ R+TK G Sbjct: 725 ASEKGELALGHNLLVAYIPWEGFNFEDAILISERLVTQDLYTSLHIEKYEMEIRETKFGL 784 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 E+IT +P+V + L LD GIV G V GDILVGKVTP + L+P E+LL I G Sbjct: 785 EKITNKLPDVRKKDLKNLDAQGIVKPGTWVQEGDILVGKVTPIRKKPLSPHERLLYDIVG 844 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK--DKRALEIE---EMQLKQAKKDLSE 962 + V+DSSLRVP G V+D+Q+ D K ++ ++ ++ L Q ++ Sbjct: 845 KINPTVRDSSLRVPRGTQARVLDIQIIYSDEKTKLGEEFVGKVPLKVQILLAQRRRIQVG 904 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + G I +L + D P D L Sbjct: 905 DKMAGRHGNKGIISRILPIQDMPY-LPDGTPLDIVLN 940 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 172/482 (35%), Positives = 250/482 (51%), Gaps = 58/482 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G V GDIL G + KGE L LL A + + +D+ L +S + Sbjct: 707 IVSEGDWVEAGDILADGSASEKGELAL--GHNLLVAYIPWEGFNFEDAIL-----ISERL 759 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ----------ILEAGLFSRIRAV 978 + ++T +EK + + + L++ L + + I++ G + + + Sbjct: 760 VTQDLYTSLHIEKYEMEIRETKFGLEKITNKLPDVRKKDLKNLDAQGIVKPGTWVQEGDI 819 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV K P +R L + + L + ++ K Sbjct: 820 LVGKVTPIRKKPLSPHERLLYDIVGKINPTVRDSSLRVPRGTQARVLDIQIIYSDEKTKL 879 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G++ V V++ LA +RRIQ GDKMAGRHGNKG+IS+I PI+DMPY +GTP+DIVL Sbjct: 880 GEEFVGKVPLKVQILLAQRRRIQVGDKMAGRHGNKGIISRILPIQDMPYLPDGTPLDIVL 939 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN+GQ+ E L +A + +G+ + + G + + Sbjct: 940 NPLGVPSRMNVGQVYECLLSLAGRYLGENYRVVPFDEL--------------FGPHISRS 985 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + S + + + L + G+ +++DGRTG Sbjct: 986 LTYSKLYESSLKN-------------------------KQHWLFNPNCPGKTKIFDGRTG 1020 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F++PVTVG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWAL Sbjct: 1021 ECFDQPVTVGEAYVLKLVHLVDDKIHARSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWAL 1080 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 E +GAAY LQE+LTVKSDDV GR K+ +I+ G + G PE F VL+KE++SL +++ Sbjct: 1081 EGFGAAYILQELLTVKSDDVKGRHKIMYSILTGKNM-TMGTPECFKVLVKELQSLCLDVG 1139 Query: 1339 LE 1340 + Sbjct: 1140 VY 1141 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 136/296 (45%), Gaps = 23/296 (7%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS- 72 F ++L P L IQ SF KF+E G+ + PI S + ++ + Sbjct: 2 SFNNISKLLT-PDFLEIQRVSFVKFLES------GIINEIKRRNPITSSAKEYQIFFYPE 54 Query: 73 -YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 Y+L P F ++ + G +Y++ L + ++L +IK Q V +G +PL+T Sbjct: 55 AYQLEAPEFSPKDALLYGKSYASRLFLPVQLTN-------QVTGEIKFQWVLLGTLPLLT 107 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 G F++NG RV+++QL RSPGV++ + S + ++ A I RG+WL E D Sbjct: 108 KRGHFILNGCPRVVINQLIRSPGVYYQK---RLDSQKRDIFYADFICERGAWLRIEMDTS 164 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR----DNKLQMELVPERLR 247 ++ R+ R K+P I+L+++ + + I ++ I + K + + +P+ ++ Sbjct: 165 QRIWARMKRTPKIPVLILLQSMGMSLQTIFSSTSQRTILAKSLLPYEQKGKTKTLPKLVK 224 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + + + + ++A + +K+ + E+ +++ K D Sbjct: 225 AQNPLLLVRRHPVSQDTALKVLSALIQARTKKEILVNSEMGKKFLMKKFRNPRSYD 280 >UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax=Embryophyta RepID=RPOB_ANGEV Length = 1070 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 261/760 (34%), Positives = 411/760 (54%), Gaps = 20/760 (2%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHI-RQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 L +F I +V + + R + +L+ + + + G + + Sbjct: 106 LMNSQGTFVINGIARVVINQILRSPGIYYDSELDHNGNSIYTGTIISDWGGRFKSEIDGK 165 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + + N ++S+ +L L G + L + + + A+V Sbjct: 166 KRIWVRLSKNRKVSIIIL--LLAMGLNMNDILKNVRYPNIFLRLFQRQAENIQSYEDAIV 223 Query: 365 EIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 E+Y+ + G ++ + FF + +++L GR N+ L + +L Sbjct: 224 ELYKNLYSAGGNLVFSDSICKELQTKFF-QQKFELGQFGRRNLNKKLNLDVPGNEHLLLP 282 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 D++ + LI + G G +DDID L NRR+RSV ++ Q + L R+E +++ + Sbjct: 283 QDLLAAVDYLIGVNYGIGTLDDIDDLKNRRVRSVADLLREQLGLALDRLEILIRQTIHTV 342 Query: 483 DLDT--LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 + P+ +I + P++ ++FFGS LSQF+DQ NPL+E+THKRR+S+LGPGGLTR Sbjct: 343 ARRKRLVTPKGLITSAPLTTIFQDFFGSHSLSQFLDQTNPLAELTHKRRLSSLGPGGLTR 402 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 A F+VRD++P+HYGR+CPIET EG N GLI SL+++A+ N+ G L +P+ K++ + Sbjct: 403 RTASFQVRDINPSHYGRICPIETSEGMNAGLIASLAIHAKVNDRGSLLSPFYKISKTLGE 462 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + I YLS+ E+ Y IA N+ + E R + E + Q+ + + Q Sbjct: 463 EHIVYLSSEEDEYYRIATGNTLSLDREIREERATPARYRQEFLTIAWKQIHFRSIFPFQY 522 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 S+G SLIPFLEH+DANRALMG+NMQRQAVP + +K +VGTG+E +A+DSG V+ + Sbjct: 523 FSIGTSLIPFLEHNDANRALMGSNMQRQAVPLSQPEKCIVGTGLESQIALDSGSVVVSNQ 582 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G + Y+D I I + E +DI ++ Y RSN NTCI+Q P VS GE + +G Sbjct: 583 DGQIAYLDGETISI------LLQNEKTVDIKSII-YERSNNNTCIHQRPVVSQGERLRKG 635 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +LADG +T GELALG+N+ VA+MPW GYNFED++L+SER++ ED +T+ HI+ Sbjct: 636 QLLADGTATVGGELALGRNILVAYMPWEGYNFEDAVLISERLIYEDIYTSFHIERYEINI 695 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQLTPE 898 T GPE+IT +IP++ L LD +G+V G+ V GD+LVGK+TP+ + PE Sbjct: 696 YTTSQGPEKITKEIPHLDSYVLRHLDNNGLVVPGSWVETGDVLVGKLTPQEAENSLRVPE 755 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 KLL+AI G + ++ ++S L+VP G G VIDV+ + + + + + Q +K Sbjct: 756 GKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIYDEDTLPNIA--NMVHVYILQKRK 813 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + G + +L + D P D L Sbjct: 814 IQVGDKVAGRHGNKGIVSKILPRQDMPY-LQDGTPVDMIL 852 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 235/480 (48%), Gaps = 65/480 (13%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 +V G + G +L G +L +L A + + +D+ L +S +I Sbjct: 625 VVSQGERLRKGQLLADGTATVG-GELALGRNILVAYMPWEGYNFEDAVL-----ISERLI 678 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVE 985 ++T +E+ + + ++ K++ L+ L+ + + G V Sbjct: 679 YEDIYTSFHIERYEINIYTTSQGPEKITKEIPHLDSYVLRHLDNNGLVVPGSWVETGDVL 738 Query: 986 AEKLDK--------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 KL +P + L+ + + L + + Sbjct: 739 VGKLTPQEAENSLRVPEGKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIYD----- 793 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 +D P + +V VY+ KR+IQ GDK+AGRHGNKG++SKI P +DMPY ++GTPVD++ Sbjct: 794 --EDTLPNIANMVHVYILQKRKIQVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMI 851 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 L+PLGVPSRMN+GQI E LG+A + ++ + + Sbjct: 852 LSPLGVPSRMNVGQIFECLLGLAGDILKKHYRITPFDERYER--------------EASR 897 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 K+ S + L + G+ RL DGRT Sbjct: 898 KLVFSELHEASQEAAIP-------------------------WLFEPDHPGKSRLIDGRT 932 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ FE+PVT+G YM+KL H VDDK+HARS+G Y+LVTQQPL G+++ GGQR GEMEVWA Sbjct: 933 GDIFEQPVTIGKAYMMKLIHQVDDKIHARSSGPYALVTQQPLRGRSRGGGQRVGEMEVWA 992 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 LE +G +Y LQEMLT+KSD + R+K+ +IV G +P +PESF +L++E+RSL +N Sbjct: 993 LEGFGVSYILQEMLTIKSDHIPARSKLLGSIVTGKSIPKPNTVPESFRLLVRELRSLAVN 1052 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 87/424 (20%), Positives = 148/424 (34%), Gaps = 37/424 (8%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYR 74 + ++ +P IQ + FQ+FI QD L + I+ E + YR Sbjct: 5 ENKKMFVLPEFGRIQFEGFQRFIHQD------LVEELTNFPKIEDIDQEVEFRLFGERYR 58 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 L EP ++ + TYS+ L V +L+ I+ Q V+ G IPLM G Sbjct: 59 LTEPCIKERDAVYQSFTYSSDLYVPAQLMRRRN-------GRIQRQTVHFGSIPLMNSQG 111 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 TFVING RV+++Q+ RSPG+++DS+ +G +Y II G E D K + Sbjct: 112 TFVINGIARVVINQILRSPGIYYDSE---LDHNGNSIYTGTIISDWGGRFKSEIDGKKRI 168 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILD----------LFFEKVIFEIRDNKLQMELVPE 244 +VR+ + RK+ I+L A+ IL LF + +EL Sbjct: 169 WVRLSKNRKVSIIILLLAMGLNMNDILKNVRYPNIFLRLFQRQAENIQSYEDAIVELYKN 228 Query: 245 RLR-GETASFDIEANGKV---YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 G F ++ + ++ + R L K + + + +D Sbjct: 229 LYSAGGNLVFSDSICKELQTKFFQQKFELGQFGRRNLNKKLNLDVPGNEHLL----LPQD 284 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + + +LD + L + + L L E L + Sbjct: 285 LLAAVDYLIGVNYG-IGTLDDIDDLKNRRVRSVADLLREQLGLALDRLEILIRQTIHTVA 343 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 + P + F + S+ + + + R L G Sbjct: 344 RRKRLVTPKGLITSAPLTTIFQDFFGSHSLSQFLDQTNPLAELTHKRRLSSLGPGGLTRR 403 Query: 421 SKDD 424 + Sbjct: 404 TASF 407 >UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae RepID=D1J787_ECTSI Length = 1139 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 306/902 (33%), Positives = 454/902 (50%), Gaps = 65/902 (7%) Query: 213 LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 ++ +I+ + R ++ +P L E +F +V + + R Sbjct: 88 MSLKKNEIIKKGIVQPEDFSRKERVFFGEIP--LLTEKGTFIFNGCERVIISQIIRSPGV 145 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 + +Q+ K+ E + G + + + + + + + L + Sbjct: 146 YYKQIIKEKKIFYEGTIISKYGSWLTFEL---EYNLIWVKFDKQYKIPINWFLVGLSLEE 202 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP--------PTREAAESL 384 E T + S + D++++ E +++ T + L Sbjct: 203 SEVYQTVQNFNFLIKSLSAIRLAIFDKMTSKSEKNKVVDKENHEAYNRNILLTVFRVQEL 262 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 + YDL VGR+K N+ L L+ DI+ V+ KLI I ++DD Sbjct: 263 INQRLLDKGVYDLGEVGRIKLNKKLDIGLPLSRRTLTSLDILKVIDKLIHISFHNEKLDD 322 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE--------------------------- 477 ID+L NRR+RSVGE+ + Q RV L R+++ + Sbjct: 323 IDNLENRRVRSVGELLQLQVRVALGRIKKKINTDEKLTAEMFRIKKNKKRAGMKNSTPKK 382 Query: 478 ----------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 R +TLMP +++N+K +++ ++EFFG S LSQ+ D+ N L+++THK Sbjct: 383 NKSTKKNQLGRKKKPQKETLMPNELLNSKVLTSVIREFFGLSPLSQYFDEVNALAQLTHK 442 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RRIS+LGPGGL E F RD+HPT YGR+CPIETPEG GLI SL+ +A+ N YGF+ Sbjct: 443 RRISSLGPGGLNSEHVSFAARDIHPTQYGRLCPIETPEGQKAGLIASLATHARINNYGFI 502 Query: 588 ETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 TP+ +V G V E+ YL+A +E Y +A + L + F +V RS E Sbjct: 503 TTPFFRVYKGKVLYELGPVYLTAEQEATYNVASGDVLLTRDNFFRTKIVPVRSFNEFITV 562 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 V+++ VS Q+++VGASLIPFLEHDDANRALMG+NMQRQAVP L KP++GTG+E Sbjct: 563 DAINVNFLAVSPIQILAVGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIE 622 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 +A DS V + G++ V + RI I + + + Y L KY RSNQ T I Sbjct: 623 HQIAADSQVVLINLLDGIIDSVCSDRITII-DNKYLGSSKM----YFLDKYRRSNQETII 677 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 NQ P + GE VE G ++ADGP T+ GELALGQN+ VA+MPW+GYNFED+ILVS+R+VQ+ Sbjct: 678 NQKPLIWNGEIVEPGQIIADGPGTEGGELALGQNLTVAYMPWDGYNFEDAILVSDRLVQD 737 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 D FT+IHI++ D EEIT IPN+ E + LD +GI+ G V GGDILVG Sbjct: 738 DLFTSIHIEKYELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDILVG 797 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKR 944 K+TP E PE KLLRAIF ++ + +DSSLRVPNGVSG VI++Q +R+ G Sbjct: 798 KITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASREKGDNLGSG 857 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 E + + Q KK + G I ++ + LP +++ L Sbjct: 858 IYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPF-----LPDGTIVDVILNP 912 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 +++ Q E F +R K+ D++ + + A+K+ + D Sbjct: 913 LGVPSRMN--VGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKETD 970 Query: 1065 KM 1066 K Sbjct: 971 KC 972 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 168/480 (35%), Positives = 246/480 (51%), Gaps = 61/480 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +++ G V G I+ G T GE L + L A + +D+ L + Sbjct: 682 LIWNGEIVEPGQIIADGPGTEGGELAL--GQNLTVAYMPWDGYNFEDAILVSD-----RL 734 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + +FT +EK + L E +++ + + I++ G F + Sbjct: 735 VQDDLFTSIHIEKYELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDI 794 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + D+LP + L E + + L E + ++ + Sbjct: 795 LVGKITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASR----EK 850 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L G+ + V + +A ++I+ GDK++GRHGNKGVISKI P +DMP+ +GT VD++L Sbjct: 851 GDNLGSGIYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPFLPDGTIVDVIL 910 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN+GQI E LG A + + + + + A Sbjct: 911 NPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKET- 969 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + L + + G++ L DGRTG Sbjct: 970 --------------------------------------DKCWLFNKFSPGKVLLTDGRTG 991 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + F+ V VG Y+LKL HLVD KMHARSTGSYSLVTQQPLGGK++ GGQRFGEMEVWAL Sbjct: 992 DVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWAL 1051 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EA+G AYTLQE+LT+KSDD+NGR +++ I+ G++ EPG+PESFNVLL+E+ +LG+++ Sbjct: 1052 EAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGHNIPEPGIPESFNVLLRELNALGLDMT 1111 >UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 Tax=cellular organisms RepID=RPOB_ARATH Length = 1072 Score = 555 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 256/769 (33%), Positives = 416/769 (54%), Gaps = 23/769 (2%) Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR-QLEKDDVKLI 285 K +++ ++ + +P L + + ++ + + + + + +L+ + + + Sbjct: 89 KTSRNMQEQRIFIGNIP--LMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHNGISVY 146 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + + ++ + ++S+ +L+ + I + Sbjct: 147 TGTIISDWGGRLELEIDKKARIWARVSRKQKISILVLSSAMGLNLREILE-NVCYPEIFL 205 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + +A++E Y+ G+P E+ + FF R +L +GR Sbjct: 206 SFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFH-QRCELGRIGRR 264 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 N L + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++Q Sbjct: 265 NINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ 324 Query: 464 FRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 + L R+E VK + L PQ+++ + P++ + FFG LSQ +D+ NPL Sbjct: 325 LGLALARLENVVKGTIGGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPL 384 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ++I H R++S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SLS++A+ Sbjct: 385 TQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARI 444 Query: 582 NEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 ++G LE+P+ ++ + I +LS ++ Y+IA NS G E V R + Sbjct: 445 GDWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQAVPARYR 504 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 E + ++V + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K + Sbjct: 505 QEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCI 564 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 VGTG+ER VA+DSGV A+A+ G + Y D +IV+ N D + L Y RS Sbjct: 565 VGTGLERQVALDSGVPAIAEHEGKILYTDTEKIVLSGNGDTLS--------IPLIMYQRS 616 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 N+NTC++Q P V G+ +++G +LADG +T GELALG+N+ VA+MPW GYNFED++L+S Sbjct: 617 NKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFEDAVLIS 676 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 E +V D +T+ HI++ + T GPE IT +IP++ L LD++GIV +G+ V Sbjct: 677 ECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVET 736 Query: 880 GDILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GDILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + Sbjct: 737 GDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKK 796 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 G EI + + Q ++ + G I +L + Sbjct: 797 GGSSYNP--EIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPY 843 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 228/482 (47%), Gaps = 67/482 (13%) Query: 871 VYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V G + G IL G T GE L +L A + + +D+ L +S ++ Sbjct: 628 VRRGKCIKKGQILADGAATVGGELALGK--NILVAYMPWEGYNFEDAVL-----ISECLV 680 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----EELQILEAGLFSRIRAVLVAGGVE 985 ++T + K + + ++ K++ L+ L+ + + + G + Sbjct: 681 YGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVETGDIL 740 Query: 986 AEKLDK--------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 KL P DR L L + ++ L + + K+ Sbjct: 741 VGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKG--- 797 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 G P +I++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G PVD+V Sbjct: 798 -GSSYNP---EIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMV 853 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 NPLGVPSRMN+GQI E LG+A + ++ + + Sbjct: 854 FNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQ--------------EASR 899 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 K+ S + + + G+ R++DGRT Sbjct: 900 KLVFSELYEASKQTANP-------------------------WVFEPEYPGKTRIFDGRT 934 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ FE+PV +G Y+LKL H VD +H RS+G Y+LVTQQPL G+++ GGQR GEMEVWA Sbjct: 935 GDPFEQPVIIGKPYILKLIHQVDVIIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWA 994 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 LE +G A+ LQEMLT KSD + R ++ + G +P ESF +L++E+RSL + Sbjct: 995 LEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAQESFRLLVRELRSLALE 1054 Query: 1337 IE 1338 + Sbjct: 1055 LN 1056 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 70/366 (19%), Positives = 145/366 (39%), Gaps = 30/366 (8%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVFD 81 +P IQ + F +FI+Q GL I+ E Q +Y+L EP+ Sbjct: 12 IPGFNQIQFEGFYRFIDQ------GLIEELAKFPKIEDIDHEIEFQLFVETYQLVEPLIK 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ +TYS+ L V L+ T ++++EQ +++G IPLM GT ++NG Sbjct: 66 ERDAVYESLTYSSELYVSAGLIW-------KTSRNMQEQRIFIGNIPLMNSLGTSIVNGI 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R++++Q+ +SPG+++ S+ +G +Y II G L+ E D K ++ R+ R+ Sbjct: 119 YRIVINQILQSPGIYYQSE---LDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRK 175 Query: 202 RKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 +K+ ++ A+ +IL+ + ++ +K + ++ G + +E + Sbjct: 176 QKISILVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKI------GSKENAILEFYQQ 229 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA--KDYIDESTGELICAANMELS 318 G I + + + + + I + + + + ++ + Sbjct: 230 FSCVGGDPIFSESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAA 289 Query: 319 LDLLA--KLSQSGHKRIETLFTNDL-DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 D L K + L + + + L + I +R Sbjct: 290 ADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRYKLI 349 Query: 376 PTREAA 381 PT + Sbjct: 350 PTPQNL 355 >UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax=Viridiplantae RepID=RPOB_OLTVI Length = 1416 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 260/749 (34%), Positives = 400/749 (53%), Gaps = 72/749 (9%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 R VP +++Q +SF +F+E GL PI + + EL + Y+L Sbjct: 6 RQNSFLVPDFIAVQRNSFSQFLES------GLIQEISKRNPITNSTKELELCFYPQYYKL 59 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 P + ++ ++ TYS L + ++L K +K Q V +G +PLMT G Sbjct: 60 SPPELNAKQSILKNKTYSCRLYIPVKLTNKR-------TKTLKLQWVVLGNLPLMTKRGH 112 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ING+ RVI++Q+ RSPGV+F +H+ K+ Y A +I YRG+WL E D K +++ Sbjct: 113 FIINGSPRVIINQMVRSPGVYFKEV---SHADQKLTYYADLIAYRGAWLRIELDKKADIW 169 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 R+ + KLP I+L+AL IL L ++ Sbjct: 170 ARMKKTPKLPMLILLQALGLNLPTILKS----------------------LNYPKFFENL 207 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +G ++QL+K V E +++D + ++ Sbjct: 208 GHDGN------------FMKQLKKGRVSSRSSSQELSGSFNLSEDVS-----LRLDDSSK 250 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + + + + + TLF G + ++ + L AL + ++ + Sbjct: 251 NMGAENVQRAPLQKSTKKATLF------GDFSRSSVYCKTQEEALWALYALTHPLKNPDE 304 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 T +S F + YDLS +GR++ N+ L E ++ D++ + LI++ Sbjct: 305 VTANLGKSFLYRKFMNSRVYDLSPLGRLRLNQKLNLSVNENITTITAQDLLFITNTLINL 364 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G G+VDDID+L NRRIR+ GE+ +NQF +GL+R+E+ ++E+L L +IN Sbjct: 365 NYGVGKVDDIDNLKNRRIRTAGELVQNQFGIGLLRLEKIIREKLKQQQTK-LSIGSLINT 423 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 KPI+ A++EFFGSS LSQFMDQ NPL+EITHKRR+S+LGPGG+ RE AG +R +HPTHY Sbjct: 424 KPINGALREFFGSSPLSQFMDQTNPLAEITHKRRLSSLGPGGVNRETAGMAIRGIHPTHY 483 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGN 613 GR+CPIETPEG N GL+NSL++Y++ N YGF+ETP+ KV G V + + SA +E Sbjct: 484 GRICPIETPEGQNAGLVNSLTIYSRVNPYGFIETPFYKVVKGQVQNSTRPIFFSAYQEEK 543 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 ++A + ++ + + + R E + +R+++DY+ VS Q++S+ SLIPFLEH Sbjct: 544 KLLAPGDIYANKLKYLPKSELPIRKLAEFTRTTREKIDYISVSPLQMISIATSLIPFLEH 603 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 DDANRALMG+NMQRQAVP + A+ P+VGTG+E VA DSG AK+ G V Y A +I Sbjct: 604 DDANRALMGSNMQRQAVPLMTAEAPVVGTGLECRVASDSGHVLQAKKSGFVTYSSAEKIT 663 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 I + P ++ + L+K S Q+ Sbjct: 664 I------LSPVDSTPAVPKLSKGNNSPQH 686 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 165/507 (32%), Positives = 251/507 (49%), Gaps = 58/507 (11%) Query: 843 TKLGPEEITADIPNVGEAALS-KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 TK + IT ++ + + + +V G V GD+L T G +L+ + L Sbjct: 942 TKTQLKPITYELQKLFRSNQDTSIMHRPVVREGEWVNRGDLLADNSTTVG-GELSLGKNL 1000 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS 961 L A + + +D+ L +S ++ +T +E+ + + + L+Q + Sbjct: 1001 LLAYMPWEGYNFEDAIL-----ISERLVSDDAYTSLHIERYEVEIRETKFGLEQITSQIP 1055 Query: 962 EELQ--ILEAGLFSRIRAVLVAGGVEAEKLDKLPR------DRWLELGLTDEEKQNQLEQ 1013 +E + L+ ++ + G + K+ +P+ ++ L + + + Sbjct: 1056 DEGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKNLSRYEKLLYDVVGKKISTTRDTS 1115 Query: 1014 LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 L ++ + V +Y+A KR+I GDKMAGRHGNK Sbjct: 1116 LRVPRGVSGRVIHVEILNAENLPP---EFVFEGPSRVNLYIAEKRKIHVGDKMAGRHGNK 1172 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 G+IS I P +DMPY +GTP+D+VLNPLGVPSRMN+GQI E LG+A + +G K Sbjct: 1173 GIISNILPRQDMPYLPDGTPLDMVLNPLGVPSRMNVGQIYECLLGLAGRYLGQKFKVRPF 1232 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 + G + + S + + Sbjct: 1233 DE--------------IYGPQTSRSLVYSKLYEARLRTGQR------------------- 1259 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 L + + G+ RL+DGRTGE F +PVTVG YMLKL HLVD+K+HARS G YSL Sbjct: 1260 ------WLFNPASPGKTRLFDGRTGECFSQPVTVGQAYMLKLIHLVDEKIHARSIGPYSL 1313 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 VTQQPL G+++ GGQR GEMEVWALE +GAAYTLQE+LTVKSDD+ GR ++ ++I Sbjct: 1314 VTQQPLRGRSKHGGQRLGEMEVWALEGFGAAYTLQELLTVKSDDIKGREQVMESIQKNKT 1373 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELE 1340 G PESF VL++E++SL +++ + Sbjct: 1374 IS-LGTPESFKVLIRELQSLCLDVGVY 1399 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 110/287 (38%), Positives = 153/287 (53%), Gaps = 5/287 (1%) Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 TA +K+ G Y AS + D + Y L K RSNQ+T I P V G Sbjct: 915 TANSKKTGEALYKLASSESATKSMDFSTKTQLKPITYELQKLFRSNQDTSIMHRPVVREG 974 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 E V RGD+LAD +T GEL+LG+N+ +A+MPW GYNFED+IL+SER+V +D +T++HI+ Sbjct: 975 EWVNRGDLLADNSTTVGGELSLGKNLLLAYMPWEGYNFEDAILISERLVSDDAYTSLHIE 1034 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 R+TK G E+IT+ IP+ E LS LD GI G V GDIL+GKV P + Sbjct: 1035 RYEVEIRETKFGLEQITSQIPD--EGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKN 1092 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL--EIEEMQ 952 L+ EKLL + G+K S +D+SLRVP GVSG VI V++ + + + + Sbjct: 1093 LSRYEKLLYDVVGKKISTTRDTSLRVPRGVSGRVIHVEILNAENLPPEFVFEGPSRVNLY 1152 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + +K + G I +L + D P D L Sbjct: 1153 IAEKRKIHVGDKMAGRHGNKGIISNILPRQDMPY-LPDGTPLDMVLN 1198 >UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax=Heterosigma RepID=RPOB_HETCA Length = 1116 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 307/848 (36%), Positives = 443/848 (52%), Gaps = 45/848 (5%) Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 I L A + +K E K+ + +P L T SF + + + Sbjct: 79 IFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIP--LMTSTGSFIVNGCEGY---RNQ 133 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 I + + I V IA + + + G + E + + L Sbjct: 134 IIRCPGLYYKAEFLNNNIVSTVTIIAQRGSWLKFEFDKNGY-WVRIDKEKKISIFDFLEG 192 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 E L I+ L+ T +++ P + Sbjct: 193 LNINDEEILSGLK-----SIAPLLKYKKTQ----------EILKRNNDPDLKNLIEKIT- 236 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 + Y L +GR+ NR L L+ DI ++ + R+ DDID Sbjct: 237 ---DPNSYSLGIIGRLNLNRRLGLNISTRVHTLTIHDIFGIIDFFLSARS--FVPDDIDD 291 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 L NRRIR+VGE+ +Q +GL R+ER + ER + ++P+ ++NA+PI +A++EFF Sbjct: 292 LRNRRIRAVGELITSQCEIGLNRLERNILERTNFSGSVRILPKTLVNARPIMSAIQEFFN 351 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 SSQLS +MDQ N LSE +KRRISALGPGGL +R RD+HPT YGR+CPIETPEG Sbjct: 352 SSQLSHYMDQTNLLSETANKRRISALGPGGLNADRVTVAARDIHPTQYGRLCPIETPEGQ 411 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDE 625 N+GL+++L+ YA+ N GF++TPY +V +G + + YL+A +E IA A+ D+ Sbjct: 412 NVGLVSTLASYARINRNGFIQTPYFRVENGKILTQQPLIYLTAEQENLK-IAPADVKRDQ 470 Query: 626 EGHFVEDLVTCRSKGE-SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 +G+ V+D + R + + + VD++ VS Q++SV ASLIPFLEHDDANRALMGAN Sbjct: 471 DGYLVDDFIVTRFQSKNFIITPSKLVDFISVSEIQIISVAASLIPFLEHDDANRALMGAN 530 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 MQRQAVP L KP+VGTG+E VA DS + +A + G+V+YV + +I IK E E Sbjct: 531 MQRQAVPLLYPRKPIVGTGIESQVAFDSRLVNIATKPGIVKYVSSQQIDIKNIEGEK--- 587 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 Y L KY SNQ+TC+NQ P V +G+ ++ G V+ADGP T GELALGQN+ VA+ Sbjct: 588 ----IAYKLIKYRPSNQDTCLNQRPLVWVGQSIKTGQVIADGPGTQSGELALGQNLTVAY 643 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 MPW GYN+ED+ILVS+++ ++ FT+IHI+E + TK G + IT+DIP V E Sbjct: 644 MPWQGYNYEDAILVSDKLDIQNLFTSIHIEECETEVQQTKTGEQVITSDIPLVSEKNCKN 703 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LDE+GI+ +G V GDILVGK+TPKGE PE KLL+AIFG K D++DSSLRVP G+ Sbjct: 704 LDENGIIKVGKYVYPGDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMRDSSLRVPGGL 763 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 SG V+D+++F + K + + Q K + G I +L + Sbjct: 764 SGRVLDIKIFKKPKPGKVFGVGSKIRVFIAQISKLQVGDKIAGRHGNKGVISRILPHQDM 823 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 LP +++ L +++ Q E KR KI D++ Sbjct: 824 PF-----LPDGTSVDIILNPLGVPSRMN--VGQIFECLLGLAGDQLNKRFKILPFDEMYQ 876 Query: 1045 GVLKIVKV 1052 + + Sbjct: 877 NEASRILI 884 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 165/508 (32%), Positives = 250/508 (49%), Gaps = 62/508 (12%) Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEK 900 G + I + L++ +V++G + G ++ G T GE L + Sbjct: 581 KNIEGEKIAYKLIKYRPSNQDTCLNQRPLVWVGQSIKTGQVIADGPGTQSGELAL--GQN 638 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 L A + + +D+ L + +FT +E+ + ++ + + D+ Sbjct: 639 LTVAYMPWQGYNYEDAILVSD-----KLDIQNLFTSIHIEECETEVQQTKTGEQVITSDI 693 Query: 961 S----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 +E I++ G + +LV ++D+LP + L+ + + Sbjct: 694 PLVSEKNCKNLDENGIIKVGKYVYPGDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMR 753 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 L + K+ K + GV ++V++A ++Q GDK+AGRH Sbjct: 754 DSSLRVPGGLSGRVLDIKIFKKPKPGKV-----FGVGSKIRVFIAQISKLQVGDKIAGRH 808 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 GNKGVIS+I P +DMP+ +GT VDI+LNPLGVPSRMN+GQI E LG+A + + Sbjct: 809 GNKGVISRILPHQDMPFLPDGTSVDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFKI 868 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 + + + + A +Q Sbjct: 869 LPFDEMYQNEASRILINQKLKDAAKKQNKP------------------------------ 898 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 L + G+I L DGRTGE+F+ PV VG Y+LKL HLV+DK+HARSTG Sbjct: 899 ---------WLFSAYSPGKILLSDGRTGEKFDNPVLVGRSYILKLAHLVEDKIHARSTGP 949 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 YSL+TQQP+GGK+Q GGQRFGEMEVWALEA+GAAYTLQE+LT+KSDD+ GR + +IV Sbjct: 950 YSLITQQPVGGKSQNGGQRFGEMEVWALEAFGAAYTLQELLTIKSDDMQGRDDVLNSIVC 1009 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIE 1338 G + +PESF VL++E+ +LG++I Sbjct: 1010 GQEIPKSSIPESFKVLMRELNALGLDIT 1037 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 21/234 (8%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS-GNSELQYVSYRLG-EP 78 + +P L IQ SF F+ GL S+ PI + +L+ +P Sbjct: 7 ITKLPDFLEIQRSSFCWFL------LKGLSYELNSLSPIIDVNVKRVKLKLYPQEFVLKP 60 Query: 79 -VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK---DIKEQEVYMGEIPLMTDNG 134 + TY + + ++ + E+ T K + +++V++G+IPLMT G Sbjct: 61 GRTTPICAKQNDSTYGVRIFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIPLMTSTG 120 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 +F++NG E +Q+ R PG+++ ++ + ++ II RGSWL FEFD K+ Sbjct: 121 SFIVNGCEG-YRNQIIRCPGLYYKAE----FLNNNIVSTVTIIAQRGSWLKFEFD-KNGY 174 Query: 195 FVRIDRRRKLPATIILRALNYTTEQI---LDLFFEKVIFEIRDNKLQMELVPER 245 +VRID+ +K+ L LN E+I L + ++ L+ P+ Sbjct: 175 WVRIDKEKKISIFDFLEGLNINDEEILSGLKSIAPLLKYKKTQEILKRNNDPDL 228 >UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 Tax=Streptophyta RepID=RPOB_VITVI Length = 1070 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 253/767 (32%), Positives = 414/767 (53%), Gaps = 21/767 (2%) Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR-QLEKDDVKLI 285 K ++++ + + +P L + + ++ + + + + R +L+ + + + Sbjct: 89 KTSRDMQEQTIFIGNIP--LMNSLGTSIVNGLYRIVINQILQSPGIYYRSELDHNGISVY 146 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + + ++ + ++S+ +L+ S + I + Sbjct: 147 TGTIVSDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILE-NVCYPEIFL 205 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + SA++E Y+ G+P E+ + FF + R +L +GR Sbjct: 206 SFLNDKEKKKIGSKESAILEFYQQFACVGGDPVFSESLCKELQKKFF-QQRCELGRIGRR 264 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 NR L + + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++Q Sbjct: 265 NINRRLNLDIPQNNTFLLPQDILAAADHLIGMKFGMGILDDMNHLKNKRIRSVADLLQDQ 324 Query: 464 FRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 F + L+R+E V+ + L PQ+++ + P++ + FFG LSQ +D+ NPL Sbjct: 325 FGLALIRLENVVRGTICGAIRHKLIPTPQNLVTSTPVTTTYESFFGLHPLSQVLDRTNPL 384 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ++I H R+ S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SL+++A+ Sbjct: 385 TQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARI 444 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 +G LE+P+ ++++ + YLS + Y++A NS +G E +V R + E Sbjct: 445 GHWGSLESPFYEISERSKKVRMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQE 504 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + +QV + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K +VG Sbjct: 505 FLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVG 564 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 TG+ER A+DSGV +A+ G + Y D +I + G L Y RSN+ Sbjct: 565 TGLERQAALDSGVPVIAEHEGKIVYTDTDKI--------ILSGNGDTLSIPLVMYQRSNK 616 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 NTC++Q V G+ +++G +LADG +T GELALG+N+ VA+MPW GYN ED++L+SER Sbjct: 617 NTCMHQKAQVRRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISER 676 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 +V D +T+ HI++ + T GPE IT IP++ L LD++GIV +G+ V GD Sbjct: 677 LVYGDIYTSFHIRKYEIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGD 736 Query: 882 ILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 ILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + G Sbjct: 737 ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGG 796 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 E + + Q ++ + G I +L + Sbjct: 797 SSYNP--ETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPY 841 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 227/482 (47%), Gaps = 67/482 (13%) Query: 871 VYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V G + G IL G T GE L +L A + + +D+ L +S ++ Sbjct: 626 VRRGKCIKKGQILADGAATVGGELALGK--NVLVAYMPWEGYNSEDAVL-----ISERLV 678 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE----LQILEAGLFSRIRAVLVAGGVE 985 ++T + K + + ++ + L+ L+ + + + G + Sbjct: 679 YGDIYTSFHIRKYEIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGDIL 738 Query: 986 AEKLDK--------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 KL P DR L L + ++ L + + K+ Sbjct: 739 VGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKG--- 795 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 G P + ++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G PVD+V Sbjct: 796 -GSSYNP---ETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMV 851 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 NPLGVPSRMN+GQI E LG+A + ++ + + Sbjct: 852 FNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDEKYEQ--------------EASR 897 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 K+ S + + + G+ R++DGRT Sbjct: 898 KLVFSELYEASKQTANP-------------------------WVFEPEYPGKSRIFDGRT 932 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ FE+PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWA Sbjct: 933 GDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWA 992 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 LE +G A+ LQEMLT KSD + R ++ + G P PESF +L++E+RSL + Sbjct: 993 LEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPNPEDAPESFRLLVRELRSLALE 1052 Query: 1337 IE 1338 + Sbjct: 1053 LN 1054 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 19/229 (8%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSY 73 G + +P IQ + F +FI+Q GL I+ E Q +Y Sbjct: 4 GGNEGMSTIPGFNQIQFEGFCRFIDQ------GLTEELYKFPKIEDTDQEIEFQLFVETY 57 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 +L EP+ ++ +TYS+ L V L+ T +D++EQ +++G IPLM Sbjct: 58 QLVEPLIKERDAVYESLTYSSELYVSAGLIW-------KTSRDMQEQTIFIGNIPLMNSL 110 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GT ++NG R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D K Sbjct: 111 GTSIVNGLYRIVINQILQSPGIYYRSE---LDHNGISVYTGTIVSDWGGRLELEIDRKAR 167 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMEL 241 ++ R+ R++K+ ++ A+ +IL+ + ++ ++K + ++ Sbjct: 168 IWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKI 216 >UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BEC3_9CHLO Length = 1115 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 269/849 (31%), Positives = 428/849 (50%), Gaps = 63/849 (7%) Query: 207 TIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 T IL+A Y I +I+ + + P L + F I + ++ + + Sbjct: 59 TAILKAKTYACKLYIPVQLVNNTSKKIKTQWVLLTNFP--LMTKRGHFIINGSPRIIINQ 116 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 R + +++ K + + I+ + + + + +L L Sbjct: 117 IIRSPGIYYQEVFDKKKKR-KYYADLISFRGTWLRLEIDKKKAIWARMKKTPKISILIFL 175 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLR-VDPTNDRLSALVEIYRMMRPGEPPTR---EAA 381 G L + ++H ++ + + AL +Y + P + T Sbjct: 176 QAMGLTN--QLIFHSIEHSDFLKNSFSDEENLTTTEEALKLLYSEINPKKEETSIKSSMG 233 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 + F + YDLS +GR + N L + L+ DI+ + LI + +G G+ Sbjct: 234 QKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYLIKLEHGFGK 293 Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAA 501 +DDIDHL NRR+R+ GE+ +NQ +GL+R+E+ ++E+L + ++ Q++I K I+ A Sbjct: 294 IDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKK-NRKNIILQNLITTKAINGA 352 Query: 502 VKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 ++EFFGSSQLSQFMDQ NPL+EITHKRR++++GP G++RE AG +R +HPTHYGR+CPI Sbjct: 353 LREFFGSSQLSQFMDQTNPLAEITHKRRLTSIGPNGVSRETAGMALRGIHPTHYGRICPI 412 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQA 619 ETPEGPN GL+NS++ YA+ N GFLETP+ K G + ++ + SA EE ++ + Sbjct: 413 ETPEGPNAGLVNSITSYAKINSKGFLETPFYKTFKGQIQKKLKPLFFSAEEEETKILISS 472 Query: 620 NSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 + N + + + R E+ +DQV+Y +S Q++S+ SLIPFLEH+DANR+ Sbjct: 473 DLNSSKFYFLPKKKIPTRFGTETQQTKKDQVEYSAISQIQMISIATSLIPFLEHNDANRS 532 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 LMG+NMQRQAVP ++ ++P+VGTG+E + DS + G + YV +I++ + Sbjct: 533 LMGSNMQRQAVPLIKPERPVVGTGLEGRIISDSDHALQTQFTGYISYVSGKKIIVYTIKK 592 Query: 740 -----------------------------------------------EMYPGEAGIDIYN 752 E+ + Sbjct: 593 KKNLSLNLQKSTKNSFFSEYLFPKKLKKNSTNKIKKNPLIKRNTLFIEIIKNSIKKNEIL 652 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 L + RSNQ T + + G +++ D+LAD + GE+ALG+N+ +A+MPW GYNF Sbjct: 653 LHTFQRSNQETLLTHYASICEGNWIQKNDLLADSSCSLKGEIALGKNILIAYMPWEGYNF 712 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 ED++L++ER+V ED +T+IHI+ RDTK G E+IT +P V + L LDE GI Sbjct: 713 EDAVLINERLVYEDIYTSIHIERFELEIRDTKFGLEKITNKLPEVPFSQLLHLDERGIAK 772 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 IG+ V G IL+GK+TP + L P EKLL I G+K +DSSLR P G++G +I V+ Sbjct: 773 IGSWVEEGTILIGKITPIKKKSLIPHEKLLYDIIGKKTPTTRDSSLRAPKGLTGRIIHVE 832 Query: 933 VFTRDGVEKDKRAL--EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 + + + + + + +K + G I +L + D Sbjct: 833 ILETKNLPPESLFEGPGRVHIYIAEKRKIQVGDKISGRHGNKGIISKILPRQDMPF-LPD 891 Query: 991 KLPRDRWLE 999 P D L Sbjct: 892 GTPVDMVLN 900 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 146/481 (30%), Positives = 236/481 (49%), Gaps = 59/481 (12%) Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 + G + D+L + L+ A + + +D+ L ++ ++ Sbjct: 671 ICEGNWIQKNDLLADSSCSLKGEIALGKNILI-AYMPWEGYNFEDAVL-----INERLVY 724 Query: 931 VQVFTRDGVEKDKRALE----------IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 ++T +E+ + + + ++ ++ +E I + G + +L+ Sbjct: 725 EDIYTSIHIERFELEIRDTKFGLEKITNKLPEVPFSQLLHLDERGIAKIGSWVEEGTILI 784 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 +K +P ++ L + + + L ++ + + Sbjct: 785 GKITPIKKKSLIPHEKLLYDIIGKKTPTTRDSSLRAPKGLTGRIIHVEILETKNLPPESL 844 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 PG V +Y+A KR+IQ GDK++GRHGNKG+ISKI P +DMP+ +GTPVD+VLNP Sbjct: 845 FEGPG---RVHIYIAEKRKIQVGDKISGRHGNKGIISKILPRQDMPFLPDGTPVDMVLNP 901 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 LGVPSRMN+GQILE LG+A + + ++ G + + + Sbjct: 902 LGVPSRMNVGQILECLLGLAGIFLNQQYKITPFDEKY--------------GPEASRSLV 947 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 S + + + L + G+I+L+DGR G+ Sbjct: 948 FSKLYEARLKTGQK-------------------------WLFNPNFPGKIQLFDGRNGKC 982 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 F++ T+G Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE Sbjct: 983 FDQHTTIGQAYILKLVHLVDDKIHARSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEG 1042 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +G+AY LQE++T+KSDD GR ++ I+ G PE+F VL+KE++SL ++I + Sbjct: 1043 FGSAYILQELITIKSDDTKGRHQVINAILKNKSIS-LGTPEAFKVLIKELQSLCLDIIVY 1101 Query: 1341 D 1341 Sbjct: 1102 T 1102 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 130/352 (36%), Gaps = 19/352 (5%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P + IQ +SF +++ GL ++ PI + N EL + Y+L P F Sbjct: 3 LPDFIEIQRNSFNALLKK------GLIKEIKNRSPITNIKKNIELFFYPELYQLNPPNFT 56 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + ++ TY+ L + ++LV T K IK Q V + PLMT G F+ING+ Sbjct: 57 NKTAILKAKTYACKLYIPVQLVN-------NTSKKIKTQWVLLTNFPLMTKRGHFIINGS 109 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R+I++Q+ RSPG+++ K K Y A +I +RG+WL E D K ++ R+ + Sbjct: 110 PRIIINQIIRSPGIYYQEVFDKKK---KRKYYADLISFRGTWLRLEIDKKKAIWARMKKT 166 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 K+ I L+A+ T + I E F + L + +I + Sbjct: 167 PKISILIFLQAMGLTNQLIFHSI-EHSDFLKNSFSDEENLTTTEEALKLLYSEINPKKEE 225 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 K R+ + + + T ++ + Sbjct: 226 TSIKSSMGQKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYLI 285 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + I+ L + I + + E + R Sbjct: 286 KLEHGFGKIDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKKNRKN 337 >UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=Q8I5X9_PLAF7 Length = 1450 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 200/1194 (16%), Positives = 414/1194 (34%), Gaps = 201/1194 (16%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 ++ + I ++ L+ E+L +++ + A + + Sbjct: 380 YDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNIC--------ATITSTTAESKSRC 431 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 V D ++ A E ++ + + L + Sbjct: 432 AIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIGSHKNYVNGILLSLYE--- 488 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE--DRYDLSAVGR 402 L + L AL+ I + +RP R A+ F ++ + + D+ G Sbjct: 489 ------LYNENIKTNLDALLYIGKKIRP-----RLLAKGFFSSMKEKQVKNEKDIIEEGL 537 Query: 403 MKFNRSLLREEIEGSGIL---SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM 459 +R LL + S I ++++++D N K E+DD D+ GN+R+ G++ Sbjct: 538 DFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQL 597 Query: 460 AENQFRVGLVRVERAVKERL-------------------------SLGDLDTLMPQDMIN 494 F R +K+++ + D+ +P+D+I Sbjct: 598 ISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIIT 657 Query: 495 AKPISAAVKEFFG-------SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +A + S +SQ + + + ++ I R+++ + R Sbjct: 658 RGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNS----QFEKGRKVSGP 713 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R + P+ +G +CP +TPEG + GL+ +L++ ++ + ++ L+ Sbjct: 714 RALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLT 773 Query: 608 AIE---EGNYVIAQANS---NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 E EG + + F++ + R G+ F +++ + + Sbjct: 774 GEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNAI-YIS 832 Query: 662 SVGASLIPFLEHDDANRALMGANMQR-----------------QAVPTLRADKPLVGTGM 704 + G L L + ++ + + + L+ Sbjct: 833 TDGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALN 892 Query: 705 ERAVAVDSGV------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 E +++ + T + G++ Y + ++ + M G+ I ++ R Sbjct: 893 ESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAM--GKQAIGAIGYNQFVR 950 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 + + V +P+ + + + +L GQN VA M + GY+ ED+I++ Sbjct: 951 CDTLLYL----LVYPQKPLVKSKTI---EFINFEKLPAGQNAIVAVMSFCGYDIEDAIVM 1003 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 ++ + + +++ + + G +I P V + E I Sbjct: 1004 NKSSIDRGFGRCMSLRKHSVELKKYFNGSNDIVLPSPLVINKLQQQRKEREIKSEIKNEK 1063 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 D + K + K K +VK S N Sbjct: 1064 EKDGI--KQEHHHNNIDSKNNKSSYNNNVSKIDNVKKDSYGHKN---------------- 1105 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 ++ +I++M K +K S ++ + + + L + + +D Sbjct: 1106 -ISNESKDDIKKMANKDIRKYHSLDMDGVASIGYLIKEGQLYVNKFSPKNIKDHVKD--- 1161 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 + ++ ++ + +K + + LK+ K+ + R Sbjct: 1162 --IGKVDINDFKINEI-KYKSVYPSYIDKIIFTE----------NSEGLKLYKIIMRQTR 1208 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 + GDK + RHG KGV+ + EDMP+ E+G D+++NP G PSRM +G++LE Sbjct: 1209 LPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVAS 1268 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 AA G+ + ++ E + R Sbjct: 1269 KAAVMDGEYKYGSIFSGTPFEEIAEILFRYG----------------------------- 1299 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 F+ + + + Y G TGE E + +G +Y KL H+ Sbjct: 1300 --------FNCSSKELL-----------------YSGLTGEPLETYIFMGPIYYQKLKHM 1334 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 V DK+HAR+ G L+T+QP G+++ GG R GEME L AYG + L E L + SD Sbjct: 1335 VQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVC 1394 Query: 1299 NGRTK----------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 N + + MP + +L +E++++ + ++ + Sbjct: 1395 NVYICEDCGMMGYDLYCTFCKKCDKNIVIQMPYACKLLFQELQTMNVFPKIIVK 1448 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 67/466 (14%), Positives = 149/466 (31%), Gaps = 51/466 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + P L V L+ ++S+ FI+++ + + A + + ++++ Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKT---IMNATTNKIIKSDIDEHFYVEFLDIT 299 Query: 75 LGEP---------VFDVQECQIRGVTYSAPLRVKL-----------------RLVIYERE 108 +G P Q C+ R +TYSAP+ V + RL + R Sbjct: 300 VGTPSVEENMIETKLTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLRS 359 Query: 109 APEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 +E+ + +GE P G F++ GTERV++ Q S K + Sbjct: 360 DICVLNNKSEEELMKLGECPY-DPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICA 418 Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEK 227 + S + + IILRA+ Y + ++I + Sbjct: 419 TITSTT---AESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIGSH 475 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + EL E ++ + + + + K++ +IE Sbjct: 476 KNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDIIEE 535 Query: 288 PVEYIAGKVVAK-------DYIDESTGE------LICAANMELSLDLLAKLSQSGHKRIE 334 +++++ +++ D+ +++ ++ +AN + +D + Sbjct: 536 GLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAG 595 Query: 335 TLFTNDLDH-GPYISETLRVDPTNDRLSALVEIY-RMMRPGEPPTREAAESLFENLFFSE 392 L + + TL+ + Y +R + +F NL Sbjct: 596 QLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDI 655 Query: 393 DRY--DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + + E+ S +LS+ I + + + Sbjct: 656 ITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLN 701 >UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota RepID=C1E1U0_9CHLO Length = 1178 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 214/1378 (15%), Positives = 440/1378 (31%), Gaps = 270/1378 (19%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + + L QLDSF +FI+ + I + ++ Sbjct: 20 WTVISSFFEEKGLARQQLDSFNEFIQHTMQE-------------IVDEMSDFTIE----- 61 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 +E + E + ++ +++Y+ + P++T+ Sbjct: 62 -------PEE---------------QHMPGEEADGKGKKKYKVEFKQIYLSK-PMVTEA- 97 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 +G + + R + + + + + I G +++ D ++ Sbjct: 98 ----DGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTDEIDATTGKYIE-TIDTEEYP 152 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 V K+P + + + +L + + L + + Sbjct: 153 KVFFG---KVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVLIAQ----E 205 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + VYV + R+ + + + ++ + G + Sbjct: 206 KMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGTKDEAGVISVTIP 265 Query: 315 MELS-LDLLAKLSQSGHKRIETLFTNDLDHGP------YISETLRVDPT-NDRLSALVEI 366 + + L G + + + + + ++ + AL I Sbjct: 266 YIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSIEEAQVIQSQDVALDFI 325 Query: 367 YRM---MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 + + P + A + + L VG EG Sbjct: 326 GKRGSAVGVTRPKRIQYAREIL-------QKELLPHVGVN-----------EGCETKKAY 367 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSL 481 + ++ +L+ G+ + DD DH GN+R+ G + FR +V + V+ + + Sbjct: 368 FLGYIVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRCI 427 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRR 529 + + AK I++ +K + SQ +++ + S ++H RR Sbjct: 428 DSGKDIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRR 487 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +++ + RE + R +H +H+G VCP ETPEG +GL+ +LS+ + G Sbjct: 488 LNS----PIGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSV-GSPSA 542 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN----LDEEGHFVEDLVTCRSKGESSLF 645 P + + + + +S N N E V+ L R K + Sbjct: 543 PLLEFLEEWSMENLEEISPSVIVNATKIFVNGVWVGVHREPAQLVQTLRNLRRKLDI-TI 601 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 V + + ++ + I L + N ++ + +K + G Sbjct: 602 EVGVVHDIALRELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLY-----EKEITG---- 652 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 G ++YVD + + I L + Sbjct: 653 -------YTWNDLVATGCIEYVDTEEEETTM---------IAMTIDEL-----------V 685 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 Q G PS LG + + +P+ +N S + + Sbjct: 686 GQRINAEPGGVKHMYTHCEIHPSMILG-------ICASIIPFPDHNQ--SPRNTYQSAMG 736 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 + +++ R L P V A+ L Sbjct: 737 KQAMGMYVTNFQI--RMDTLAYVLFYPQKPLVTTRAMEHL-------------------- 774 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 +L ++ I + +D S+ + + +F R +++K+ Sbjct: 775 -----HFRELPAGVNVVVGIMCYTGYNQED-SVIMNQSSIDRGLFRSIFYRSFKDEEKKQ 828 Query: 946 LEIEEMQLKQAKKDLSEELQI-----LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + + +L++ +D + ++ L+ + + K LP Sbjct: 829 GSLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLP------- 881 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 +++ ++ ++ + + + +T D L+ VK+ + R Sbjct: 882 ---EDDPSAVSKRFTKRDCSTGMKNSETGIIDQVLLTTND----QGLRFVKIRVRSCRTP 934 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 Q GDK + RHG KG I EDMP+ G DI++NP +PSRM I Sbjct: 935 QVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTI----------- 983 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 G + ++ + + G Sbjct: 984 ----GQLVECLMGKVAAMM---------------------------------------GK 1000 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 F I ++L + G +Y+G TG + E + +G Y +L H+VD Sbjct: 1001 EGDATPFTPVTVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVD 1060 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---- 1296 DK+H+R G ++T+QP+ G+++ GG RFGEME + ++GAA L+E L +SD Sbjct: 1061 DKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRI 1120 Query: 1297 DVNGRTKM-------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 V + KN + ++ MP + +L +E+ S+ + L Sbjct: 1121 HVCETCGLIAVANLKNQTFECCKNPSERTKVVQVMMPYACKLLFQELMSMAVAPRLVT 1178 >UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOB_HELSJ Length = 1247 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 314/1365 (23%), Positives = 550/1365 (40%), Gaps = 217/1365 (15%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV--FPIQSYSGNSELQYVSYRLGEPVFDVQ 83 LL Q ++++ F+ GL+ AF+ F I++ + ++ + L + Sbjct: 30 NLLINQRENWRFFL------INGLKLAFKEFEHFKIKNNNFIIDIVFQEKFLFFKQI--R 81 Query: 84 ECQIRGV-TYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 + ++ V T+ + + + ++ + + + + + +G +P ++ +F I+G Sbjct: 82 QAYLKKVETFGYNIFIPI-IITQKILNKKNNLNLTFFKWLDLGILPSLSPKTSFYIDGIS 140 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA--RIIPYRGSWLDFEFDPKDNLFVRI-D 199 R + +Q +SPG+ FD D K S K A +II RGSW + +F+ I + Sbjct: 141 RAVSTQKKKSPGLMFDFDLTKKSSLEKREGEAFLKIIAPRGSWFKISYSEDHIIFIEIRN 200 Query: 200 RRRKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 K+P L AL ++ E I F + F++ NK N Sbjct: 201 IAYKIPIFTFLCALGFSLESIFQFFNYNINNFKLIPNKY-------------------DN 241 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 ++ I + L + ++YI + +T A + L Sbjct: 242 TNALIKARNDIFILYSDLLPLLNKTKKNFEIKYIINHYFFSYIWNSNTRYCGEATRLHLY 301 Query: 319 LDLLAKLSQSG--HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 + + LS + + I+ ++ + I+ + + ++ + G+ Sbjct: 302 NKVGSPLSLNSLFLEEIDFIYITKIFIYRLINNNFKDENNDNLKNMRFRNG-----GDYI 356 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + + LF+ F L+ N S K+DI + KK Sbjct: 357 YLQTRQGLFDFESF------LNINLHNIENNSFFCNITTN---KKKEDIYSIKKKKNIKN 407 Query: 437 NGKGEVDDIDHL---GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 ++ + H+ + G + +QF L Sbjct: 408 FNLSKISFLKHILLKSWKSFFLSGTL--SQFAENL------------------------- 440 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 NPLS ITH RR ++LGPG L + A EVR ++P+ Sbjct: 441 -------------------------NPLSYITHARRFTSLGPGSLKKAEASIEVRSINPS 475 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD---EIHYLSAIE 610 + GRVCPIETPEG N GL++S S+Y+ G L P+ + + + + E Sbjct: 476 YNGRVCPIETPEGFNAGLVHSFSLYSFKGVNGELLLPFYFIYKNIKQSYYLPPIFFNIEE 535 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 E N I + ++ F+ ++ R+ ++ + +S ++S+ SLIPF Sbjct: 536 ESNQSIITGDLIHEKWNDFLNKKLSLRNNFHLDKNDISKISFQSLSPYHMISLATSLIPF 595 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 LEH+DANRALMG+NMQRQ VP L A +V TG++ D +++ G Sbjct: 596 LEHNDANRALMGSNMQRQTVPVLGAHNFIVRTGLDTKFFSDISSIPISQINGF------- 648 Query: 731 RIVIKVNEDEMYPGEAGIDI--YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 N Y + I + + ++N N+ ++GD L + Sbjct: 649 NFESNNNYCYFYKIDNLITLNNISYNYIKKTNHNSLYINESIKKKNPWHQQGDFLINNSV 708 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL---------ACV 839 + G+LALG N+ +A++PW+GYN+ED+++++ER V + T++HI L Sbjct: 709 IENGKLALGPNLLLAYLPWHGYNYEDAVIINERCVSQKILTSLHIITLTNSLELAYREIN 768 Query: 840 SRDTKLGPEEITADI---------------PNVGEAALSKLDES---GIVYIGAEVTGGD 881 + + +I N + K + S + IG + GD Sbjct: 769 KKKEFFYEVPVKLEILFSFFAPFYYNLKYYKNQEFSQFEKKNPSYYTNNINIGTFLKKGD 828 Query: 882 ILVGKVTPK------GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + K + Q LLR F D K+ Sbjct: 829 CIFSKCRIRFSFSRELRLQYKELFILLREAFPTF-EDFKN-------------------F 868 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + DK +++ + K+ + ++ + + + + Sbjct: 869 ANIFAYDKYKQKLDRKKQKKNTRLKTDNFIFNKNSTLFKKHKL----KALINYYNIEDST 924 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + + L+++ Y + F+ + ++ + + K + + + Sbjct: 925 IYAQKNQEGLIISKHLKKVPMTYTSI-TPFDLEEFLSTKESKKKEYYNLFFTKSINIEIL 983 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 R IQ GDK AGRHGNKG+ISKI PI +MP +GTP+DI+LNPLG+PSRMN+GQI E+ Sbjct: 984 QLRDIQLGDKCAGRHGNKGIISKICPINEMPLLPDGTPIDIILNPLGIPSRMNVGQIFES 1043 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 LG+A + + + +Q G + + LS ++ Sbjct: 1044 LLGLAGFYLNETYTINIFDEQ--------------FGLEASRSFVLSKLYKASILSNKP- 1088 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 L +G+ + DG TG+ F++P+T+GY +LKL Sbjct: 1089 ------------------------WLFLKKNAGKTNIIDGLTGKYFQQPITIGYSSILKL 1124 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK+H RS G YS +T QP GK+ GGQR GEME+WAL+ YGA++ LQE+ T+KS Sbjct: 1125 IHMVTDKLHGRSIGGYSTLTLQPTKGKSLLGGQRVGEMELWALQGYGASWALQELYTLKS 1184 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D V R + ++N ++ + E + + ++ L E+ SL I+ + Sbjct: 1185 DLVEAR-QHFQNYINSFNI-ESNIYDRNDISLTELESLIISDTFK 1227 >UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y994_COPPD Length = 1293 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 291/857 (33%), Positives = 428/857 (49%), Gaps = 44/857 (5%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + I + + ++V E ++ +G V V ++ R + K V Sbjct: 327 GDTSINIFTVSTVWDQIVAALRETELLEDVLDKDGSVVVRANSPMSTRDVETFFKSHVIP 386 Query: 285 IEVPVEY-IAGKVVAKDYIDESTGELICAA----NMELSLDLLAKLSQSGHKRIETLFTN 339 + +Y I KV + + G +I + L +++ T Sbjct: 387 MVRSGKYDIKVKVPVRGQMKAYEGWVIADDVEVDGESVEGRALDPELAKSLRKVSDFVTL 446 Query: 340 DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSA 399 + + + SA VE+ + R GE + AE F L F R + Sbjct: 447 QVPIKRFF-----------QGSAFVELEKR-RTGETLSEREAERRFRQLLFDPKRNQIGR 494 Query: 400 VGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM 459 VG + + L+ + + ++ L+ G DDIDHL NRR+R++GE+ Sbjct: 495 VGAYHIEHRYGIKVEDS---LTDEMLAELGGILLAYCIGSTMPDDIDHLSNRRVRAIGEL 551 Query: 460 AENQFRVGLVRVERAVKERL-SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 F R+ + ++ + + L ++ ++ V F S++ Q ++ Sbjct: 552 YYEVFANAFERLVKTARDEMINQQKEPELKLHRVLAQNILTQYVWRFVNPSEVHQLLEYT 611 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+EITHKRR++A+G GGL+RE A EVRDVH THYGR+CPIETPEG NIGLI SL+ Y Sbjct: 612 NPLTEITHKRRVTAMGRGGLSREHASIEVRDVHHTHYGRLCPIETPEGQNIGLILSLATY 671 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ NE+GFL TPYR+V +G VTDEI ++ A+EE I A++ L+ D V R Sbjct: 672 AKLNEHGFLITPYRRVVNGEVTDEIVWMDALEEEKEYIVPADTPLNGR-KINVDRVLARH 730 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + + +DQ+ MDVS Q S+ ASL+PFLE DDA RALMG+NMQRQAVP + A+ P Sbjct: 731 RSQWVAVDKDQITLMDVSVTQPFSISASLVPFLESDDAIRALMGSNMQRQAVPLINAESP 790 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 +V TGME+ V A + G V YVD ++ IK + Y L + R Sbjct: 791 IVATGMEKHVVESLDYVIKANQDGTVSYVDGKQVKIKAEDGYE-------KTYQLKVFDR 843 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 +NQ+T ++ P V G+ V++GDVLA+ ++D GELALG+N+ VAFMPW GYN+ED+IL+ Sbjct: 844 TNQDTVVHFRPKVKQGQKVKKGDVLAEAITSDNGELALGRNVLVAFMPWEGYNYEDAILI 903 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLG-PEEITADIPN-VGEAALSKLD-ESGIVYIGA 875 S+R+V++D FT++HI+E + G EEIT D+P+ V E LD E+GIV +G Sbjct: 904 SKRLVKDDVFTSVHIREYMVEVAELSRGRSEEITYDLPDSVSEQEKRYLDPETGIVMVGT 963 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 EV GDILVGKVTPK E + E KLL AIFGEK VKD+SLRVP G V+D Q+ Sbjct: 964 EVKPGDILVGKVTPKEEEDKSIETKLLSAIFGEKLDKVKDTSLRVPPAEGGIVVDTQILR 1023 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + ++ ++ + Q +K + G + VL + D P D Sbjct: 1024 N----SETGKIKAVKVFVAQKRKIQPGDKMSGRHGNKGVVSRVLPEEDMPF-LPDGRPVD 1078 Query: 996 RWLE-LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL---APGVLKIVK 1051 L LG+ QL +L F+ ++ +G G+ + K Sbjct: 1079 IVLNPLGVPSRMNIGQLLELHLGLAAKVLGFKVEVPIFSNFGVEGVKELLREAGLPENGK 1138 Query: 1052 VYLAVKRRIQPGDKMAG 1068 V L R G++ Sbjct: 1139 VVLRDGRT---GEEFLS 1152 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 164/448 (36%), Positives = 224/448 (50%), Gaps = 81/448 (18%) Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL------------- 946 +L A + + +D+ L ++ VFT + + + Sbjct: 884 NVLVAFMPWEGYNYEDAILISK-----RLVKDDVFTSVHIREYMVEVAELSRGRSEEITY 938 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 ++ + +Q K+ L E I+ G + +LV E+ DK + L ++ Sbjct: 939 DLPDSVSEQEKRYLDPETGIVMVGTEVKPGDILVGKVTPKEEEDKSIETKLLSAIFGEKL 998 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 + + L E + ++ + G +K VKV++A KR+IQPGDKM Sbjct: 999 DKVKDTSLRVPPAEGGIVVDTQILR---------NSETGKIKAVKVFVAQKRKIQPGDKM 1049 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 +GRHGNKGV+S++ P EDMP+ +G PVDIVLNPLGVPSRMNI G Sbjct: 1050 SGRHGNKGVVSRVLPEEDMPFLPDGRPVDIVLNPLGVPSRMNI---------------GQ 1094 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + L +V G + P+ Sbjct: 1095 LLELHLGLAAKVL---------------------------------------GFKVEVPI 1115 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F +KELL+ LP +G++ L DGRTGE+F +TVGYMYM+KL H+V+DK HAR Sbjct: 1116 FSNFGVEGVKELLREAGLPENGKVVLRDGRTGEEFLSDITVGYMYMMKLIHMVEDKWHAR 1175 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 STG Y+LVTQQPLGG+A FGGQR GEMEVWALEAYGA+Y LQEMLTVKSDDV GR K Y Sbjct: 1176 STGDYALVTQQPLGGRAHFGGQRLGEMEVWALEAYGASYVLQEMLTVKSDDVEGRKKAYI 1235 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 + P +PESF VL E+++LG Sbjct: 1236 ALTRNQPLEPPQLPESFKVLELELKALG 1263 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 153/371 (41%), Gaps = 41/371 (11%) Query: 6 TEKKRIRKDFGKRPQV----LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 T +K+I + GK + + P L + +S+ F+ + GL F + FPI+ Sbjct: 2 TARKKIWEVSGKVSKPTLSEVPYPDFLEAKKNSWNWFVTE------GLRELFNTYFPIED 55 Query: 62 YSGNSELQYVSYRL--------GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 G + + Y G P+ ++ TY+ L VK+R+ E Sbjct: 56 AKGRWRIDILDYYFENDVADETGNPINTPEDAIREHATYAKRLIVKVRVHNSE------- 108 Query: 114 VKDIKEQEVYMGE-IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 +I E+E +G+ IP MTD+G F++NG+ RV ++QL RSPG++ ++D L Sbjct: 109 TGEIVEKEHVLGKRIPWMTDSGDFIVNGSRRVTLNQLVRSPGIYLEADGS--------LR 160 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFE 231 +IP RG+W+D E+D K+ L + +DRR +KL LRAL Y ++ + + + Sbjct: 161 RISLIPQRGTWIDIEYDGKNPLSIVLDRRSKKLNLATYLRALGYMSDDEIRTRLKDSALK 220 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 +E + + N Y R + + + + L + V+ Sbjct: 221 ------WIEFFLNDAGFDNKKLFVSQNLVSYFNYLRSYYSSTAQTVSEFRNVLENLDVDD 274 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 + + + ++ E+ + + S + + ++ L + G Sbjct: 275 QLLERLEEYNVESVLDEIAESYASQYSGLEILNIFKTIVDENLKLLIDKTIDGDTSINIF 334 Query: 352 RVDPTNDRLSA 362 V D++ A Sbjct: 335 TVSTVWDQIVA 345 >UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota RepID=B7FVG3_PHATR Length = 1212 Score = 512 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 224/1406 (15%), Positives = 424/1406 (30%), Gaps = 312/1406 (22%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIE---QDPEGQYGLEAAFRSVFPIQSYSGN------ 65 + + L+ QLDSF +FI+ Q+ G + + Y Sbjct: 32 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVGYDDEAYDREQ 91 Query: 66 -------SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 E+ + L +P +GT+ ++ Sbjct: 92 EKETKFVFEIHFGQVYLSKPT---------------------------TVEKDGTITNMF 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 E + MT + ++ V ++Q + G+ + Sbjct: 125 PHE---ARLRNMTYSAPLYVD----VDLNQ----------------YQVGREVNVNDPSE 161 Query: 179 YRGSWLDFEFDPKDNL-FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 G + E K+ L +V I R ++ + + + +++ + + + Sbjct: 162 DLGEPVATEHAKKEFLGYVPIMLRSLF--CVLSDKDDADLSDLGECVYDQGGYFVINGSE 219 Query: 238 QMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 ++ + ERL + +K + I + + V YI Sbjct: 220 KVIIAQERLSNNHVY--------AFKKKQPSKFSWVIETRSQVENSTRPVSTLYIQMYHK 271 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN------DLDHGPYISETL 351 E + + ++ G+ + + D + +L Sbjct: 272 GGRGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSL 331 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 R ++ T+E + + + L VG Sbjct: 332 EEAFVIQRQDVALDFIGRRGSARDVTKEDRMRYAQAIL---QKEVLPHVG---------- 378 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 E I + KL+ R G+ E DD DH G +R+ G + FRV ++ Sbjct: 379 -TEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRVLFRKL 437 Query: 472 ERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-----------SQFMDQN 518 + V++ L + I + I+ +K + SQ +++ Sbjct: 438 TKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMATKAGVSQVLNRL 497 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 S ++H RR + L R + R +H TH+G VCP ETPEG +GL+ +L++ Sbjct: 498 TYASSLSHLRRCNT----PLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALM 553 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS-NLDEEGHFVEDLVTCR 637 A G + P + + T+ + + VIA+ N+ + G++V + Sbjct: 554 AYITT-GTAQVPVLEFLEEFSTENLTDILPS-----VIAEPNTCKIFVNGNWVGIHRDPK 607 Query: 638 SKGESSLFSRDQVDY-MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 + E+ R VD +VS + ++ I + + R L Q+ A ++ Sbjct: 608 ALEETFRSLRRMVDIDAEVSIVRDIADKEVRI-YTDAGRICRPLFVVQEQKLA---IKKH 663 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV------------------NE 738 + GM G+V+Y+D + Sbjct: 664 HIMQLQGM--DPNEKKLTWTDLLMEGLVEYIDTEEEETTMVAMEPNDLDSDDSYSSTYTH 721 Query: 739 DEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELA 795 E++P I + +S +NT + M ++G + A + +A Sbjct: 722 CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG-------IYASNYQVRMDTMA 774 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 + + + + +H +EL Sbjct: 775 H-------VLHYPQ----------KPLCTTRAMEFLHFRELPSGVN-------------- 803 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 +G V G E+ L+ + Sbjct: 804 ---------------CIVGILVYTG--------------YNQEDSLILNQSAIDRGLFRS 834 Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 S R ID + + G + E+ + + E L+ Sbjct: 835 SYYRCY-------IDQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAP 887 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + V K + G+ + +++ + + Sbjct: 888 GTRVSGDDVLIGKTAPID----ATAGMP--------SRYSKRDCSTSMKANEHGIVDNVL 935 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 I+ + + KV + R Q GDK A RHG KG I EDMP+ G D Sbjct: 936 ISTTKE----GYRFTKVRIRNVRTPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGIVPD 991 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++NP H + I I +L + Sbjct: 992 IIVNP---------------HAIPSRMTIAQLIECLLGKVV------------------- 1017 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 + +G F +I L G LY G Sbjct: 1018 --------------------VFQGCEGDATPFTDVTVEDISTRLHAMGYQRHGNEALYQG 1057 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TG V +G + +L HLVDDK+H+R+ G +++T+QPL G+++ GG R GEME Sbjct: 1058 HTGRPLNARVFIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMER 1117 Query: 1276 WALEAYGAAYTLQEMLTVKSD----DVNGRTKM------------YKN---IVDGNHQME 1316 L +G A +++ V SD + R + ++ + + Sbjct: 1118 DCLITHGCANFMRDRFFVNSDQYRIHICERCGLTAQANLKKMTYECRSPMCVGRPTQICQ 1177 Query: 1317 PGMPESFNVLLKEIRSLGINIELEDE 1342 +P + +LL+E+ S+ I + + Sbjct: 1178 VEIPYAAKLLLQELNSMCIQTRIYTK 1203 >UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Scenedesmus obliquus RepID=RPOB1_SCEOB Length = 726 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 222/736 (30%), Positives = 363/736 (49%), Gaps = 41/736 (5%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P L+ IQ F +E+ G+ PI + E+ + YRL +P + Sbjct: 8 IPDLVEIQRQGFFYLLEK------GIIEEISKRNPITCFEKQIEIFFYPQYYRLTKPFYS 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 +Q+ +Y + + ++L + K I + + + PLMT+ G F++NG+ Sbjct: 62 IQQAIFYKKSYVSKFYIPVQLT-------DRKTKRIFLKWILLAHFPLMTNRGHFLLNGS 114 Query: 142 ERVIVSQLHRSPGVFFDSD--------KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 RVI++QL RSPG++F + + S+ + A II +G+WL E D + Sbjct: 115 ARVIINQLVRSPGIYFRENMHEIFSNKWSEKPSTTFRRFYADIICLKGTWLRIECDKDFS 174 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI----FEIRDNKLQMELVPERLRGE 249 ++ ++ + K+P L + + + IL+ ++ + F K+Q + L+ Sbjct: 175 MWAKMKKGPKIPLLWFLLGMGLSEKYILNSVYKPMNLLQSFTKEMEKMQKSKSSKELKYP 234 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 S +A ++ + T R L+K++ K + K+ AK + Sbjct: 235 YISSTKQAWEQIQKLFKLKKTLRKFSFLKKNEEKPKTFIFGQSSTKIEAKVVFSD----- 289 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 A N + + S ++T F E + + T ++ Sbjct: 290 FAAFNNSVKRENTVFASNDDTFLVQTSFETKKKKNTRKKENFQKNKTQKTTKLSLQNKEK 349 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 + E F N F + YDL GR N+ L L+ D++ Sbjct: 350 RVASKLEAYELGRKWFANKFMNPRTYDLGKQGRWLINKKLGLTIPLEQTTLTALDVLTAT 409 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-------LG 482 L+ I +G E+DDIDHL N+R+R+ GE + F +GL+R+E++++ +L+ Sbjct: 410 DSLMKIEDGFFEIDDIDHLKNKRVRTAGEALQEIFSIGLIRLEKSIRLKLNGNGQQSFFQ 469 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 +++ +PI+ A +EFFG+ LSQFMDQ NPL+EITHKRR+S+LGPGG++R+ Sbjct: 470 KTSFFNFDSLMSTRPINGAFREFFGTHPLSQFMDQINPLAEITHKRRLSSLGPGGVSRDT 529 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 A +R +HP+HYGR+CPIETPEG N GL+NS++ Y++ + +G+LE+P+ KV G V Sbjct: 530 ATLAIRGIHPSHYGRICPIETPEGKNTGLVNSITTYSKISFHGYLESPFYKVYKGQVQRN 589 Query: 603 I--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + YLS ++ ++ A + NL G + + R ++ M VS Q+ Sbjct: 590 LGVFYLSPDKDDHFQTATPDLNLTPLGFLPKKPIPVRIGKRFVRMKTHKLALMGVSPLQM 649 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 +SV S IPFLEHDDANRALMG+NMQRQAVP +R ++PL+GTG+E V DSG +AK Sbjct: 650 ISVATSFIPFLEHDDANRALMGSNMQRQAVPLIRPERPLIGTGLEARVVSDSGHAILAKT 709 Query: 721 GGVVQYVDASRIVIKV 736 G + Y S+I + Sbjct: 710 SGYIVYSSGSKIYLYT 725 >UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Stigeoclonium helveticum RepID=RPOB1_STIHE Length = 696 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 226/732 (30%), Positives = 362/732 (49%), Gaps = 57/732 (7%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + +P + +Q SFQ+F+E GL PI + + E+ Y+L Sbjct: 4 EKYFIPDFVELQRRSFQRFLE------TGLIEELNKRNPITNSQKDLEILLYPEYYKLAP 57 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P ++ + + TYS L V +L + K I + V +G+IPLM+ G FV Sbjct: 58 PRWNSLDAILLSKTYSCRLYVPAQLTNRK-------TKQIMFKWVQLGDIPLMSKRGHFV 110 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL---YNARIIPYRGSWLDFEFDPKDNL 194 +NG RVI++Q+ R PG++F + SS K L Y A I RG+WL D + + Sbjct: 111 VNGAARVIINQIVRGPGLYFSEIQYNVDSSKKTLVRRYAAEFISMRGTWLRLSIDKEKMI 170 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + + K+P L + T + + + K + + L+ + + D Sbjct: 171 WAELKKTPKIPLVWFLLGMGLTEKILFQSLTQ--------PKRLLYNYLDYLKIDNLAID 222 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 +++ + ++ +L ++K ++ ++ +V Sbjct: 223 VKSQNDAFAKRALLRELLLKSKLNSSNIKTLKNSKDFKPLLLVN---------------- 266 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 D+ +++ K N + + N L AL IY + + Sbjct: 267 -----DIYSEMHSYKEKENRRYPLNSQNGDLADEKEKIPYYANSSLKALELIYSKITNTK 321 Query: 375 PPTREAAE-------SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 T + F + YDL GR+ N+ L L+ D++ Sbjct: 322 KITNLNKKFFAKQGQKWIFKKFMNPRTYDLGLHGRLSLNKKLSLSLPLSQRTLTMYDVLV 381 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTL 487 + L+ + G DDID+L NRR+R+ ++ + Q +GL+R+E+ ++ + + Sbjct: 382 ATEHLLRVEQGLLGTDDIDNLKNRRVRTSSDLIQMQIGIGLLRLEKNIRSKFTTIKG-VP 440 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 + KP++ A+KEFFG++ LSQFMD NPL+E+THKRR++ LGPGG++R+ A ++ Sbjct: 441 KINYFFSTKPLNGALKEFFGTNPLSQFMDMINPLAEMTHKRRLTTLGPGGVSRDTATMDI 500 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHY 605 R +HPTHYGR+CP+ETPEG N GL+N+L+ +A+ N G +ETP+ KV G V + Y Sbjct: 501 RGIHPTHYGRICPVETPEGKNAGLVNALTTFARVNPEGLIETPFYKVYKGQVQKKAGFFY 560 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 LSA +E +IA + NL + G + L+ R E + R+ VD+M VS Q++SV Sbjct: 561 LSAEKEEKAIIAAGDLNLSKTGFLPKGLIPVRKFDEFTKVLRNYVDFMSVSPLQMISVAT 620 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 SL+PFLEHDDANRALMGANMQRQAVP +R+++ +VGTG+E +A DSG AK GG+V Sbjct: 621 SLVPFLEHDDANRALMGANMQRQAVPLVRSEQAIVGTGIETRIASDSGHVIRAKAGGLVG 680 Query: 726 YVDASRIVIKVN 737 YV +I I Sbjct: 681 YVSGQKIRIYTF 692 >UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carteri RepID=B8R1A0_VOLCA Length = 652 Score = 502 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 247/589 (41%), Positives = 334/589 (56%), Gaps = 94/589 (15%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ Q P V G+ +E GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 118 YNLETYRRSNQDTCLIQKPAVKEGDWIETGDLLADSASSVGGELAIGHNIIVAYMPWEGY 177 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T++HI+ ++ DTKLG E+IT +IP+ E +S LD++GI Sbjct: 178 NYEDAILINERLVYEDLYTSVHIERYEVLTTDTKLGSEQITREIPDTNENEISHLDKNGI 237 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGKVTP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 238 AKIGSWVEEGDILVGKVTPFNIKTLTPQQKLLYKIFNKQLSATKDSSLRAPKGIKANVIN 297 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V + + +E + + + Sbjct: 298 VNILKKQKIELNNKDKK------------------------------------------- 314 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 ++ +T + K N L Q +++ +RRK + AP V Sbjct: 315 --------KIVITKKAKINLLTQQTISVQNNQNQNTNNTNGRRRKREISNTYAPS---YV 363 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 +YLA KR+IQ GDKMAGRHGNKG+IS+I P +DMP+ +GT VDIVLNPLGVPSRMN+G Sbjct: 364 HIYLAEKRKIQVGDKMAGRHGNKGIISRILPRQDMPFLPDGTSVDIVLNPLGVPSRMNVG 423 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 QI E LG+A + +G+ + GAD + LS D Sbjct: 424 QIYECLLGLAGRYLGEHYKIPPFDEMY--------------GADASRSFVLSKLYDARKK 469 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 L L D G+IRL+DGR E F++ VTVG Sbjct: 470 TG-------------------------LNWLFDPNHPGKIRLFDGRNSECFDQTVTVGIA 504 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y+LKL H+VDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWA+E YGAA+ L EM Sbjct: 505 YVLKLVHMVDDKLHARSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWAIEGYGAAFVLSEM 564 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 LT+KSDD+ GR ++KN+++ N G PESF VL+ E+++L ++I L Sbjct: 565 LTIKSDDMTGRQNLWKNLIENNDIS-LGSPESFKVLVCELQALCLDIGL 612 >UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-terminal section n=3 Tax=Eukaryota RepID=RPOB1_CHLRE Length = 822 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 225/760 (29%), Positives = 361/760 (47%), Gaps = 98/760 (12%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + + IQ +SF +E+ G+ F PI + E+ + Y+L Sbjct: 120 NKYLISDFVEIQRNSFFTLLEK------GIIEEFSKRNPITNSKKTMEIFFYPDYYQLTP 173 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P + + I+ +Y++ L + ++L + IK + VY+G+IPLMT G F+ Sbjct: 174 PEYSPSQAIIKSKSYTSKLYIPVQLTDKSKNI-------IKLKWVYIGDIPLMTKRGHFI 226 Query: 138 INGTERVIVSQLHRSPGVFFDSDK--------GKTHSSGKVLYNARIIPYRGSWLDFEFD 189 +NG RVIV+Q+ RSPG+++ + + Y A +I RG+WL E D Sbjct: 227 LNGCARVIVNQMVRSPGIYYQKKIYENFSNKWSEKPENTFTRYFADLICNRGTWLRIEMD 286 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 + ++ ++ R K+P L A+ T + +L + I ++ + + L Sbjct: 287 KYNKIWAQMKRVPKIPIMWFLIAVGLTDKIVLKTVMDSKILLYNLDEDPLNPRKKPLPYV 346 Query: 250 T-ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 A + K + + + LE + K A Sbjct: 347 KTPPAAWSAIYNIVFAKKIKAQEKAKKMLE--LTEGNPSSKSQTKNKTSA---------- 394 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + +L++ ++ + I+TL ++ Sbjct: 395 ----SKKSKTLNVANTKGKTPAENIKTLSELIDLEKALFLKS------------------ 432 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 E N F + YDL VGR+ FNR L + L+ D++ Sbjct: 433 ----------EQGRKWIFNKFMNPRTYDLGKVGRVNFNRKLKLSISQDITTLTPQDLLAA 482 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG------ 482 LI + G E+DDIDHL NRR+R+ GE+ + Q VGLVR+E+ ++E+++ Sbjct: 483 TNNLILVSKGLRELDDIDHLKNRRVRTSGELIQIQIGVGLVRLEKTIREKMTYASGLSSL 542 Query: 483 ----------------------DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 + L ++IN KP + A++EFFG+S LSQFMDQ NP Sbjct: 543 PSQKFAFRSSKQRNQSPVGDAENATQLTIGNLINTKPFNGALREFFGTSPLSQFMDQINP 602 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L+E+THKRR+S++GPGG+TR+ A +R +HP+HYGR+CP+ETPEG N GL+NSL+ YA+ Sbjct: 603 LAELTHKRRLSSMGPGGVTRDSATLAIRGIHPSHYGRICPVETPEGKNTGLVNSLTAYAR 662 Query: 581 TNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 N G++ETP+ +V G V + +++ SA +E + + E G + + R Sbjct: 663 VNAAGYIETPFYRVYKGQVQKKTGLYFFSAKQEEKIKLGAPDLYTSEIGFLPKASIPVRI 722 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + + SR+++ Y+ V+ Q++S+ SLIPF EHDDANRALMG+NMQRQAVP L+ +P Sbjct: 723 VEDFTKISRNEIQYVGVAPIQMISIATSLIPFFEHDDANRALMGSNMQRQAVPILKPQRP 782 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 +VGTG+E DSG AK G+V Y + I+I + Sbjct: 783 IVGTGLEARAVSDSGHVITAKSSGIVMYTSSKEIIIYSLQ 822 >UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=A8B827_GIALA Length = 1235 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 180/1099 (16%), Positives = 364/1099 (33%), Gaps = 184/1099 (16%) Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP--TNDRLSALVEIYRMMR 371 + + L+ L + +++ + + + R+ A++ + R Sbjct: 246 GRYIYVPLILVLRALVSTTDKEIYST---ICTICASAHPKEDGYVSLRVEAMLRDFHKYR 302 Query: 372 PGEPPT-REAAESLFENLFFSEDRYDLSAVGR--MKFNRSLLREEIEGSGILSKDDIIDV 428 ++ F + DRYDL+ V + F + LL + + + + Sbjct: 303 IFSHKACKQLLGGKFRMILSLLDRYDLTDVDCCDLLFEQYLLINIPKEDTRAKFNMMCLM 362 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG------ 482 +K + + + D D L ++ + G + + L+++ R V + Sbjct: 363 ARKCLLLFGSFIKPDSPDLLSSQEALTPGAFFKAEVTSTLIKIMRLVSRNATSTGAIGSY 422 Query: 483 DLDTLMPQDMINA----KPISAAVKEFFGSS--------------QLSQFMDQNNPLSEI 524 +L I + +P+S+ ++ G LS D+ N + + Sbjct: 423 ELSNSWISHYIASPKLWRPLSSGLRSLAGPGVMRAYKGHDYSNMSGLSVLADRINYVRFL 482 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 H R + G +R ++P YG C + TP+G G++ L A Sbjct: 483 AHFR---CINRGNAFATHKITSIRKLYPESYGFQCAVHTPDGAPCGILTHLCYKATVLSS 539 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNL--DEEGHFVEDLVTCRSKG 640 ++ + + LS Y + + L + LV C Sbjct: 540 TPTTD---QIANLFILLAQFGLSPSLSDIYSLCVVLNGTILGYLDTNERAIQLVACIRAA 596 Query: 641 ES--SLFSRDQVDYMD-------VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV- 690 + +F +V +++ + + + N +++ + Sbjct: 597 KVKSIIFPYTEVVFIEKGNKDHLFPGIYMNTSMGRFYRPVHSLTNNSPEYITPLEQIFLQ 656 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 + D +G + + S ++ + +V + D ++ + E +M GI Sbjct: 657 IAIYGDDVRLGVTTHQEITPTSLLSILGL---LVPFSDHNQSPRNMYECQMLKQTMGIPC 713 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 NL + + + + P +P+ R ++ D G N+ VA + Y Sbjct: 714 RNLAY--KYDTKSYLLTTPQ----KPLVRNAIIHDIGG--FDTHPTGTNLVVAVSAYTSY 765 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT-------------ADIPNV 857 + ED+ L+++ ++ F D KL T + ++ Sbjct: 766 DMEDAALINKASLERGLFHGTVYSVHDIDCYDDKLMRYMRTVATAVPYLKRSPDYIVTHM 825 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS- 916 E ++LDE G+ +GA ++ G + F + K Sbjct: 826 DENYDTELDEDGLPPVGAYLSHGSV-----------------------FYQTYDPTKQCY 862 Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 S ++ + G V V V + + + D + F Sbjct: 863 STKLYHHEPGFVEKVIVIHKSAAKGE-------------YWTDNDIATKKKRDSSF---- 905 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 AG + LD D + + N+ Q A + E+K + + Sbjct: 906 ---PAGDSNSSNLDNDASDDEISNQPGSGSESNEDNQTATPRSHA-SKAERKSSRQLQTR 961 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + + + ++ V++ + R GDK+A RHG KG++ DMP+ +G D+ Sbjct: 962 ARTESSSLHFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTSSGIVPDL 1021 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP PSRM +G ++E+ D +++ Q + + + Sbjct: 1022 IINPHAFPSRMTVGMLIESLASKIGVHYADFVDSSPFQWSDERRAIDVFGE--------- 1072 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 +LLK G G +Y Sbjct: 1073 ----------------------------------------QLLKTGQFNRYGSEVMYSAI 1092 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TG+ + +G +Y +L H+V DK R+ G +T+QP+ G+ + GG RFGEME Sbjct: 1093 TGDPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQPIKGRKRGGGLRFGEMERD 1152 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTK--------------MYKNIVDGNHQMEPGMPES 1322 AL A+GA +L+ L +SD + + H +P Sbjct: 1153 ALLAHGAMASLRGRLCTESDATEHVVCAACGSLLGMQLGGSVCRECKATGHGRLIQIPMV 1212 Query: 1323 FNVLLKEIRSLGINIELED 1341 VL ++ ++G+ + Sbjct: 1213 LLVLANDLAAMGVRMRFNV 1231 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 21/143 (14%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGNSELQYVSYRLGEPVFDVQE 84 +S ++SF FI+ + I S S +++ V+ + P F Sbjct: 54 VSAHVNSFNDFIDSLNTT------IIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFTPAF 107 Query: 85 CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT--- 141 + Y PL V L++ K + G++P+M + +++G Sbjct: 108 ARETRANYCGPLHVTLKV---------SDGPMSKTVVINAGDVPVMVGSKLCLLHGKTRE 158 Query: 142 ERVIVSQLHRSPGVFFDSDKGKT 164 ER+ + + R G +F S+ Sbjct: 159 ERIRLREDERDAGGYFISNGQDK 181 >UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E7H8_TRIVA Length = 1177 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 210/1140 (18%), Positives = 381/1140 (33%), Gaps = 204/1140 (17%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F + + KV + + + + I +K VK ++ E + V L+ Sbjct: 186 GYFIVNGSEKVIIGQEHMVINKPICYAQKSMVK-YDLATEIRSQPKVFGRLSQPFNLFLL 244 Query: 311 CAANMELSLDLLAKLSQS--GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + + AKLS++ I + + DP + E Sbjct: 245 APTAKQPERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDS------EFID 298 Query: 369 MMRPGEPPTREAAESLFENLFF-------SEDRYDLSAVGRMKFNRSLLRE--EIEGSGI 419 ++RP + + F +E++ + N LL E E Sbjct: 299 VLRPSIEESSSFLDDRACLDFVGKRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTT 358 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER----AV 475 I + LI++ G+ + DD DH N+R+ G + F + ++ + + Sbjct: 359 SKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHL 418 Query: 476 KERLSLGDLDT-------LMPQDMINAKPISAAVKEFFGSSQLS------------QFMD 516 ++RL G++D L Q ++N K I++ ++ G+ S Q ++ Sbjct: 419 EKRLKDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGSKAGVSQMLN 478 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + LS +++ RR + + R+ R +H TH+G +CP+ETPEG + GLI +L+ Sbjct: 479 RLTFLSTLSNLRRTNT----PIGRDGKLTGPRHLHNTHWGYICPVETPEGQSCGLIKNLA 534 Query: 577 VYAQTNEYGFLET--PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV 634 + + LE ++ + T I ++ + + N DL+ Sbjct: 535 LMSIVTVNRELEAGDAITRILEDTGTIPIQQITPDQIKDSTKIFLNGAWYGIHTDAYDLM 594 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 SL V F+ H + + R P L Sbjct: 595 ETLLSERRSLKIPSDVS------------------FVHHIRDQEIFIWTDGGRITRPVLI 636 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 + T + + ++ V + G+V+Y+D K+ + +L Sbjct: 637 V-NDMHLTLKKSVLYDENTNWKVLRYKGMVEYLDIDEEETKL---------IALSPADLE 686 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 + S V+ PS G + +P+ +N Sbjct: 687 ENRNSPTG--------------VKTYTHCEIHPSLIFG-------VCGTIIPFPDHNQ-- 723 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 S + + + ++ + P V + L+ + + G Sbjct: 724 SPRNTYQCAMGKQAIGLYTTNYMIRMDSSSHVLWYPQK--PLVATRNMRYLNFNKLPA-G 780 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 VT V T E+ L+ + S Sbjct: 781 INVT--------VAICCYTGYNQEDSLMLNASAIDRGLFR--SYFFRTYKE--------- 821 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 T +G + + + K + ++A + AV+ A V K+ Sbjct: 822 TAEGDGTEGASEVFTFPDPQTVKGIKLHDSSKIDADGLAIPGAVVSAQDVIIGKISPDSP 881 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + +Q + + E ++ R IT+ + L++ +V Sbjct: 882 TEL-------DHRQYKDTSCVVRPMETG-----VVDLVLRTITKKN------LQLARVRT 923 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 RR + GDK RHG KGV EDMP+ +G DI++NP +PSRM IG ++E Sbjct: 924 RQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTRDGMVPDIIMNPHALPSRMTIGHLIE 983 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 LG A Sbjct: 984 CLLGK---------------------------------------------------CTAI 992 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + + F G I + L+ G LY+GR+G++ + + G Y + Sbjct: 993 DPQNADEGDATPFCGVTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQR 1052 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+V DK HAR+ G SL+ +QP+ G+A+ GG RFGEME L A+G + +++ L Sbjct: 1053 LKHMVGDKAHARALGRKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLEN 1112 Query: 1295 SD----DVNGRTKM-----------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 SD V + D + MP +F ++++E+ S+ I L Sbjct: 1113 SDRYFVPVCKTCGLIAIEKTDGTMECPACQDEGRLAKVEMPYAFKLVIQELMSMCIAPRL 1172 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 156/1083 (14%), Positives = 328/1083 (30%), Gaps = 225/1083 (20%) Query: 18 RPQVLDVPYLLSIQLDSFQKF----------------IEQDPEGQYGLEAAFRSVFPIQS 61 + + L+ QL S+ F ++ D ++ F S + Sbjct: 25 ISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITLQSDQLLANKIKMDFNSNDDDED 84 Query: 62 YSGNSELQYVSYRLGEPV------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + + + + P ++R ++YS LR +R+V+ + +K Sbjct: 85 QGKTIHISFGTSTVLRPTTPEGKQLTPMISRLRSLSYSLILRSDIRVVVMDSN---KNMK 141 Query: 116 DIKEQEVYMGEIPLM--------------------------TDNGTFVINGTERVIVSQL 149 + V + ++P+M G F++NG+E+VI+ Q Sbjct: 142 QLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGGYFIVNGSEKVIIGQE 201 Query: 150 HR---SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF------DPKDNLFVRIDR 200 H P + K + ++ ++ + P+ + ++ + Sbjct: 202 HMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFLLAPTAKQPERPIHAKLSK 261 Query: 201 RRK-LPATIILRALNYT-TEQILDLF-FEKVIFEIRD---------NKLQMELVPERLRG 248 K +P I+ RAL + ++ILDL ++ E D + + G Sbjct: 262 TEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFIDVLRPSIEESSSFLDDRACLDFVG 321 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK------LIEVPVEYIAGKVVAKDYI 302 + S E + + R + + L + + I + V+ + Sbjct: 322 KRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMAHNLINVVLGRR-- 379 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 D+ + ++L+ L+ +L +++ T L+ + L+ + + Sbjct: 380 DQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHLE------KRLKDGNIDQMAKS 433 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL-----LREEIEGS 417 ++ R E +S R S G + L L + Sbjct: 434 AADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGSKAGVSQMLNRLTFLSTLSNLRRTN 493 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV-GE---MAENQFRVGLVRVER 473 + +D + + L + G + + G+ + +N + +V V R Sbjct: 494 TPIGRDGKLTGPRHLHNTHWGYICP----------VETPEGQSCGLIKNLALMSIVTVNR 543 Query: 474 AVKERLSLGDLDTLM---PQDMINAKPISAAVKEFFGSSQLSQFM-DQNNPLSEITHKRR 529 ++ ++ + P I I + F + D + + + +RR Sbjct: 544 ELEAGDAITRILEDTGTIPIQQITPDQI-KDSTKIFLNGAWYGIHTDAYDLMETLLSERR 602 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHY---GRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 S P ++ +RD + GR+ + ++N + + + + Sbjct: 603 -SLKIPSDVSFVH---HIRDQEIFIWTDGGRI-------TRPVLIVNDMHLTLKKSVLYD 651 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 T KV + YL EE +IA + ++L+E + + + Sbjct: 652 ENTN-WKVL--RYKGMVEYLDIDEEETKLIALSPADLEEN-----------RNSPTGVKT 697 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 ++ + V ++IPF +H+ + R M +QA+ T Sbjct: 698 YTHC---EIHPSLIFGVCGTIIPFPDHNQSPRNTYQCAMGKQAIGL--------YTTNYM 746 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 S Sbjct: 747 IRMDSSSHVLW-----------------------------------------------YP 759 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P V+ + + +L G N+ VA + GYN EDS++++ + Sbjct: 760 QKPLVATR----------NMRYLNFNKLPAGINVTVAICCYTGYNQEDSLMLNASAIDRG 809 Query: 827 RFTTIHIQELA--CVSRDTKLGPEEITADIPNVGEAAL----SKLDESGIVYIGAEVTGG 880 F + + T+ E T P + SK+D G+ GA V+ Sbjct: 810 LFRSYFFRTYKETAEGDGTEGASEVFTFPDPQTVKGIKLHDSSKIDADGLAIPGAVVSAQ 869 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 D+++GK++P T+L KD+S V +G V V Sbjct: 870 DVIIGKISPDSPTELD-------------HRQYKDTSCVVRPMETGVVDLVLRTITKKNL 916 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + R + + + K S Q G+ R + + P + Sbjct: 917 QLARVRTRQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTRDGMVPDIIMNPHALPSRM 976 Query: 1001 GLT 1003 + Sbjct: 977 TIG 979 >UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax=Marseillevirus RepID=D2XA39_9VIRU Length = 1277 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 216/1261 (17%), Positives = 431/1261 (34%), Gaps = 131/1261 (10%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 RV + F SD + + I E+ + + + R Sbjct: 87 RVTHHEFDDRIKDIFPSDARRRGIPYSAPFYCDIFVTTADGETAEYKQQTIAEIPVMVRS 146 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 L Q + +K + I D ++ + G ++ + K Sbjct: 147 CLCNLTRYNLQGDECRQYGEDPMDKGGYFIIDREIVVISSERGAFGRVYTYADKQANKKM 206 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + R I + V +E + A+ ++ + M S + Sbjct: 207 PKYEVHSEIR-ISATSNTRTTTVYVGLENGVAVLYAQHLSEKGIPLCVVLEAMNFSYLDI 265 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG--EPPTREA 380 K ++ K L+H + + R + + + ALV + G E P +A Sbjct: 266 LKFTKGLTKEQRGFLIPSLEHARAMFPSSRKNRVSSMVKALVAMGYKKPKGVEELPPSDA 325 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 L + + ++ + + ++ G Sbjct: 326 EVKLAVWAATLSKELCEKLFPCYREADK------------KVWFMCYMLARALKVKTGDR 373 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA 500 + +D DH N+R+ V + N F + + +K+ G T P I +K I+ Sbjct: 374 QPEDRDHYTNKRVDCVDSLLNNLFYSMWNQTTKFIKDS-CKGKERTADPLKPIRSKSITK 432 Query: 501 AVKEFFGSSQLS------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 ++ + S Q ++ N ++ ++ R++ A + E + R Sbjct: 433 KIRTAMSTGNWSSFNTKSKKQGTSQNYERYNIVASCSNLRKVHA----AIGTEGNMTKPR 488 Query: 549 DVHPTHYGRVCPIETPEGP-NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 VH + YG +CP +TPE GL L++ A + +E + + + Y S Sbjct: 489 RVHESSYGFICPPDTPESKDKTGLSKVLALSATMSLGCTVEECFE------ILSALEYFS 542 Query: 608 AIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 G N + D + +L + G+ + V + +V Sbjct: 543 QDF-GLETFVFLNGVIMGSTDSPKELIGELSVLKRAGDF-FWDCCFVFDEKHNEVRVNCD 600 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA----VDSGVTAVAK 719 LI L + + G + + + +G G+ + S + A+ Sbjct: 601 AGRLIRPLMVVEGGKLRFGPEHYERLMKGTITWQEFIGLGIVEILDAEQQEHSLICPSAE 660 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP--- 776 + G + + + I + I + S + + M S+ P Sbjct: 661 QLGQSESKEWTHCEIHP----LLVYGVCASIIPYSANNPSPRLSYFASMAKSSVAVPRLD 716 Query: 777 -----------VERGDVLADGPSTD---LGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 L ++ + + + QN+ VA ++G+ ED+I+ + Sbjct: 717 FGIAPFDQHVLHYPQKPLTSTKASRLLGMNKSPICQNLVVAVCSYDGFGQEDAIVACKAF 776 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 Q + H+Q + K + ++ G +V Sbjct: 777 TQRGGMVSDHVQNYVAIIDHEKEQISPSRCSDVEFSSSCQRFWCKN----CGKKV----- 827 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF-TRDGVEK 941 K+ P+ ++ P + I K D + + VF R+ + + Sbjct: 828 ---KLCPECGSEYVPSFSGHKGIVCRKKEDER----------RAFIDRQTVFWNRNPINR 874 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 KR + ++ +K++ + + L + L E +LD L + +E+G Sbjct: 875 IKRKVVVDGE-----EKEVDNQKKFLGK----KKWDCLCEEVEELPRLDHLDPEGVVEVG 925 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL-APGVLKIVKVYLAVKRRI 1060 E+ + + K E + KR ++T P ++V +A R Sbjct: 926 EVVEDGDILIAVAGVSGAKRKDESIYFGKDKRGRVTSVSYFQNPNGYLCIRVAVASTRIP 985 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENG---TPVDIVLNPLGVPSRMNIGQILETHL 1117 + GDK H KGV S +DMP+ + T D ++NPL PSRM IGQ E++ Sbjct: 986 ETGDKATSFHSQKGVFSLFVEEQDMPFTSDAFSATHPDFLINPLAFPSRMTIGQPKESNT 1045 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G + A ++ + E+ L A ++++V + + +E+ + + Sbjct: 1046 GK--------MTASAYRELPDSHRFEYENLYRTLSARIQKEVPEAEEAAKELEKRNPKTK 1097 Query: 1178 --KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 G F +++ LK G+ DGRTG++ E + VG + +L Sbjct: 1098 GYSGSYTDCTPFTS-NYQVVEDELKRRGYAPGGKEFFIDGRTGKKMEVSLFVGLVPYNRL 1156 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK+HAR+TG +T+QP G+++ GG + G ME +L GA + L++ L + Sbjct: 1157 KHMVIDKIHARATGKIQSLTRQPTEGRSRNGGLKTGIMERDSLVGNGAVFCLRDRLFLSC 1216 Query: 1296 DD----VNGRT----------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 D V K + ++ ++ +P + + +E+ ++GI + Sbjct: 1217 DKFEVWVCESCGLIAVESKEKKYCRACHGKSNVVKLAVPYATKLSFQELMAMGITPRILV 1276 Query: 1342 E 1342 + Sbjct: 1277 K 1277 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 55/430 (12%), Positives = 121/430 (28%), Gaps = 88/430 (20%) Query: 29 SIQLDSFQKFIEQ---DPEGQYGLEAAFRSVF-----------PIQSYSGNS--ELQYVS 72 Q+ ++ +F+++ + + G + P + +++ + Sbjct: 23 HHQIQAYNEFVQELLPNIIREKGRVEIDKEEETVEDDEEETVTPAAKKKRSWFQVVEFTN 82 Query: 73 YRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 G + + RG+ YSAP + + + G + K+Q Sbjct: 83 PVFGRVTHHEFDDRIKDIFPSDARRRGIPYSAPFYCDIFVTTAD-----GETAEYKQQT- 136 Query: 123 YMGEIPLMTDNG--------------------------TFVINGTERVIVSQLHRSPGVF 156 + EIP+M + F+I+ E V++S + G Sbjct: 137 -IAEIPVMVRSCLCNLTRYNLQGDECRQYGEDPMDKGGYFIID-REIVVISSERGAFGRV 194 Query: 157 F---DSDKGKTHSSGKVLYNARIIPYRGSWLDFEF----DPKDNLFVRIDRRRKLPATII 209 + D K +V RI + + + L+ + + +P ++ Sbjct: 195 YTYADKQANKKMPKYEVHSEIRISATSNTRTTTVYVGLENGVAVLYAQHLSEKGIPLCVV 254 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY------- 262 L A+N++ IL F K Q + L A F +V Sbjct: 255 LEAMNFSYLDILK-------FTKGLTKEQRGFLIPSLEHARAMFPSSRKNRVSSMVKALV 307 Query: 263 ---VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 +K + + E + + K+ + +C L+ Sbjct: 308 AMGYKKPKGVEELPPSDAEVKLAVWAATLSKELCEKLFPCYREADKKVWFMCYM---LAR 364 Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETL-RVDPTNDRLSALVEIYRMMRPGEPPTR 378 L K + + +D + L R +P Sbjct: 365 ALKVKTGDRQPEDRDHYTNKRVDCVDSLLNNLFYSMWNQTTKFIKDSCKGKERTADPLKP 424 Query: 379 EAAESLFENL 388 ++S+ + + Sbjct: 425 IRSKSITKKI 434 >UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae AF16 RepID=A8WJV6_CAEBR Length = 1160 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 214/1221 (17%), Positives = 392/1221 (32%), Gaps = 248/1221 (20%) Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI-------------E 256 LR + Y+ +D+ + + + L + +P LR Sbjct: 92 LRDMTYSAPISVDIEYTRGHQRVYKKDLVIGRMPIMLRSSKCILRDLAEEELARVQECPH 151 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 G +V KG QL K+ + + + + +V++ +S + Sbjct: 152 DPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTVKKGKY 211 Query: 317 LSL-----------DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTNDRLSA 362 + + I + ++ + ++TL + A Sbjct: 212 SVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEECINAGVYTQQQA 271 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L + ++ + + ++ + + AV + + +G+ + Sbjct: 272 LAYVTSKVKARKFTPFGSLPGTSVSVLTAPK--EHEAVDFLSNSMITHIACPDGNFKMKA 329 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + + ++LI G+ E+DD D GN+R+ G + F R +K Sbjct: 330 IYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNA 389 Query: 483 ---------DLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISA 532 D+ M QDMI ++A G+ + +F M++ ++ ISA Sbjct: 390 LMKTMAAPLDIVKHMRQDMITNTIVNAMST---GNWIIKRFRMERLGVTQVLSRLSYISA 446 Query: 533 LGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 L G +TR + FE R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 447 L--GMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITT-D 503 Query: 586 FLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTCRSK 639 E P ++ +++H + S + + + N L + V+ + R Sbjct: 504 SDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRS 563 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 G S F + S G P++ L ++Q R + Sbjct: 564 GLLSEFVSVSRSMTNRSVFISSDGGRLCRPYIIVRHGKPMLTETHVQELK-EGKRIFEDF 622 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 V G+ + V+ A+ V + I + E+ P L Y Sbjct: 623 VDDGIVEYLDVNEMNDAL-------IAVYENEIGAETTHLEIEPFTLLGVCAGLIPYPHH 675 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE---DSI 816 NQ P + +G+ A+G YN + DSI Sbjct: 676 ------NQSPR--------------NTYQCAMGKQAMGTIA---------YNQQKRIDSI 706 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL--DESGIVYIG 874 + Q + I+ KL +GI+ + Sbjct: 707 MYLLCYPQRPLVKSKTIEL------------------------TNFEKLPAGANGIIAVM 742 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE--KASDVKDSSLRVPNGVSGTVIDVQ 932 + +G DI E L + L +G VK ++ + PN ++ Sbjct: 743 SY-SGYDI---------EDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTYDRLLGPA 792 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 V + K ++ I+ G + ++ + + Sbjct: 793 VDSVTLKPIFKHKN--------------LDQEGIVFTGARILPKQTIINKYMPVVSAESG 838 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 +G+ + + + ++ A+R +T +D A + KV Sbjct: 839 SAASANTIGIAGRDVAYKDVSIT-------YKTPTPSYAERVLLTYNEDEA----HLFKV 887 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L RR + GDK + RHG KGV I EDMP+++ G D I Sbjct: 888 LLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPD---------------MI 932 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 + H G ++ K+ E++ Sbjct: 933 MNPH-GYPSRMTVGKLM--------------------------------------ELLSG 953 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 + G F G + ++ E L G+ L G TG+ + G +Y Sbjct: 954 KAGVMNGTYHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSAYIYFGPIYY 1013 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 KL H+V DKMHAR+ G + +T+QP G+++ GG R GEME L AYGA+ L E L Sbjct: 1014 QKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLM 1073 Query: 1293 VKSDD---------------------------------VNGRTKMYKNIVDGNHQMEPGM 1319 V SD+ V G + + Sbjct: 1074 VSSDEFKVLFRSFVPLIPIEVFFVRRCFQCVDVCTGCGVIGSKGWCQKCRSSKSMANIKI 1133 Query: 1320 PESFNVLLKEIRSLGINIELE 1340 P + +L +E++S+ I L+ Sbjct: 1134 PYACKLLFQELQSMNIVPRLD 1154 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 138/1029 (13%), Positives = 304/1029 (29%), Gaps = 156/1029 (15%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLG 76 P L V L+ L SF F+ + S I + N L Y+ R+G Sbjct: 32 VPAFLKVRGLVKQHLVSFDHFV------NVEIRNIMLSNQKITSDANPNFHLTYLDIRVG 85 Query: 77 EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT----- 131 +P +C++R +TYSAP+ V + + + ++++ +G +P+M Sbjct: 86 KPS----KCRLRDMTYSAPISVDIEYT--------RGHQRVYKKDLVIGRMPIMLRSSKC 133 Query: 132 -------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 G FV+ G+E+VI+ Q S +VL Sbjct: 134 ILRDLAEEELARVQECPHDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLS 193 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 + R S +P +II +A+ ++ + + Sbjct: 194 ST---SERKSKTYVTVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYV 250 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 +E KV K + + V+++ Sbjct: 251 SAFAQTLEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTAPKEHEAVDFL 310 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLA-KLSQSGHKRIETLFTNDLDHGPYISETL 351 + ++ + ++ +++ L+ ++ ++ + L+ + L Sbjct: 311 SNSMITHIACPDGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALL 370 Query: 352 RVDPTNDRLSALVEI-YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 D S L I + + + + +++ + + + Sbjct: 371 FEDVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITN--TIVNAMSTGNWIIKRFR 428 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E + + +LS+ I + + I + + R++ + +Q+ + Sbjct: 429 MERLGVTQVLSRLSYISALGMMTRINSTFEKT--------RKVSGPRSLQPSQWGML--- 477 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-----SQFMDQNNPLSEIT 525 E + G + L I V +S + F N P + + Sbjct: 478 CPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLI 537 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA--QTNE 583 + L + ER VRD+ + G + + + S++ + +++ Sbjct: 538 FLNGV--LIGTAVDPERVVKAVRDLRRS--GLL-------SEFVSVSRSMTNRSVFISSD 586 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV---IAQANSNLDEEGHFVEDLVTCRSKG 640 G L PY V G ++ ++EG + + + + D + + Sbjct: 587 GGRLCRPYIIVRHGKPMLTETHVQELKEGKRIFEDFVDDGIVEYLDVNEMNDALIAVYEN 646 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 E + ++++ ++ V A LIP+ H+ + R M +QA+ Sbjct: 647 EIGAET----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAM---------- 692 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 G + Y RI + Sbjct: 693 ---------------------GTIAYNQQKRIDSIMY----------------------- 708 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 C Q P V T+ +L G N +A M ++GY+ ED++++++ Sbjct: 709 -LLCYPQRPLVKSKTI----------ELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNK 757 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEI-----TADIPNVGEAALSKLDESGIVYIGA 875 + + + + ++ + + LD+ GIV+ GA Sbjct: 758 ASLDRGYGRCLVYKHVKGTAKKYPNQTYDRLLGPAVDSVTLKPIFKHKNLDQEGIVFTGA 817 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + ++ K P + + KD S+ V + Sbjct: 818 RILPKQTIINKYMPVVSAESGSAASANTIGIAGRDVAYKDVSITYKTPTPSYAERVLLTY 877 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + + L + + + K S Q GL ++ + + P Sbjct: 878 NEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHG 937 Query: 996 RWLELGLTD 1004 + + Sbjct: 938 YPSRMTVGK 946 >UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Tax=cellular organisms RepID=RPOB_PSEAK Length = 2178 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 223/721 (30%), Positives = 354/721 (49%), Gaps = 77/721 (10%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGE 77 +P L+IQ SF++F++ GL F++ I + + E+ + Y+L Sbjct: 61 SQFKIPDFLNIQRSSFRQFLKS------GLITEFKNCKSITNSNQTFEVFFYAEHYKLNR 114 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P + ++ ++ +YS+ L + ++L Y+ E ++ Q V + +PLMT NG F+ Sbjct: 115 PKWTPKQAILKKKSYSSQLYLPIQLSNYQTE-------EVHLQWVLLANLPLMTKNGHFI 167 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD-PKDNLFV 196 +NG RV+++Q+ RSPGV+F K + K +Y+A I RGSWL E D K +++ Sbjct: 168 LNGCPRVLMNQIVRSPGVYFR----KVVKNQKTVYSADFIAQRGSWLRLEVDTKKGDIWA 223 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 ++ + K+P LRAL T + Sbjct: 224 KLKKTPKIPIFTFLRALGLTLPIL------------------------------------ 247 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 N + K R + +K P + I Sbjct: 248 -NNSIDFAKLRYLLQFKEESKRSKKIKDFLGPGI--------------NNSLDIVEFRSL 292 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 L L K + + + +++ + L ++Y + E Sbjct: 293 LKS--LKKYMKPKPAKKSSKKQKTKKIKKWLTPFVCTTYFQSLLELCQKLYPQKKFLE-L 349 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + A+ F + YDLS +GR K N+ L IL+ D++ L+D+ Sbjct: 350 DPKLAQKFLFRKFQNPRTYDLSILGREKINKKLGISIPLEKTILTSQDVLFACLFLMDLL 409 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 G DDID L NR+I+ GE+ + Q GL+R+E+ ++E+L D+ ++ + K Sbjct: 410 QGLVISDDIDDLKNRKIKPSGELIQTQLSTGLIRLEKIIREKLKQPKQDSDSFSNLFSVK 469 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 P++ A ++FFG++ LSQ MDQ N LSEITHKRR+S+LGPGG+ RE AG +R +HPTHYG Sbjct: 470 PLNQAFRDFFGTNPLSQLMDQTNALSEITHKRRLSSLGPGGINRETAGMAIRGIHPTHYG 529 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNY 614 R+CPIETPEG N GL+NS ++++ N F+ETP+ K+ G + + S+ +E N Sbjct: 530 RICPIETPEGQNAGLVNSFTIFSHLNTKSFIETPFYKMYKGFILKNKNPFLFSSDQERNL 589 Query: 615 VIAQANSNLDEEGHFVEDL-VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 V+A + + + R E SR++++++ VS Q++S+ SLIPFLEH Sbjct: 590 VLAPGDIQTSLFHFLPPGVPIPSRQFKEFKRVSRNEINFIAVSPIQMISIATSLIPFLEH 649 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 +D NRALMG+NMQRQAVPT+R KP+VGTG+E V D G ++ G V YVD ++I+ Sbjct: 650 NDGNRALMGSNMQRQAVPTVRPSKPIVGTGLESRVISDVGHGLQVQKSGFVSYVDGNKII 709 Query: 734 I 734 I Sbjct: 710 I 710 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 147/414 (35%), Positives = 217/414 (52%), Gaps = 47/414 (11%) Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 + F + L+I+ L++ + + L+ +R + A Sbjct: 1795 RIAKEMYFFNKNEKIKLSTLQIKIKGLEKKEFSFPKILK-------ARFSLLQKAQTANL 1847 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + L W + +++ Q + + + K + + + + Sbjct: 1848 KIEKFLDDKFWNNVNYSNKNFSRNGSQKENSNADGLQFYNPLKKTKTKVLQPMEKTSFSG 1907 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + V +YLA KR++Q GDK+AGRHGNKG+IS I P +DMPY +GTP+DIVLNPLGVPSR Sbjct: 1908 PQKVHIYLAEKRKLQIGDKIAGRHGNKGIISNILPRQDMPYLSDGTPLDIVLNPLGVPSR 1967 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQILE LGMA + + G + + + S + Sbjct: 1968 MNVGQILECLLGMAGYYLKQNFKIQPFDE--------------IYGCEASRSLVYSKLYE 2013 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + + L + G+ RL+DGRTG+ F++PVT Sbjct: 2014 ARIKTGQD-------------------------WLFNANHPGKTRLFDGRTGDCFKQPVT 2048 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE +GAAY Sbjct: 2049 VGVAYILKLIHLVDDKIHARSTGPYSLVTQQPLRGRSKQGGQRVGEMEVWALEGFGAAYI 2108 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LQE+LT+KSDD+ GR ++ +I++ N + G+PESF VL++E++SL ++I + Sbjct: 2109 LQEILTIKSDDLKGRNQVMNSILN-NKPVNFGLPESFKVLVRELQSLCLDIAIY 2161 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 94/312 (30%), Positives = 162/312 (51%), Gaps = 6/312 (1%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L Y RSNQ+T + P V G+ VE+GD+LAD + GEL++GQN+ V ++PW GY Sbjct: 1515 YILNNYHRSNQDTYMIHRPLVQEGQWVEKGDILADSSVSVQGELSIGQNILVGYIPWEGY 1574 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 NFED++L+SER++ +D +T++HI+ RDT+ G E+IT IPN + +D +GI Sbjct: 1575 NFEDAVLISERLIFDDLYTSLHIERYEVEIRDTQFGLEQITNQIPN-EKGEYDYIDSNGI 1633 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG V GDILVGK+ P G+ +LT E LL I ++ +D+SLRVP GV+G VI Sbjct: 1634 AKIGTWVKEGDILVGKIAPIGQKKLTAYENLLYDILNKEIPKTRDTSLRVPRGVTGRVIH 1693 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKK----DLSEELQILEAGLFSRIRAVLVAGGVEA 986 V++ + + ++ + ++ + +K E + ++++ E Sbjct: 1694 VEIVETTKKKGNDSSIFAKSLKFPKKQKLKRVTSPEYWYPVNTKKDQKVQSFSFKNKSEK 1753 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 L + E + + + L ++ + + K++ + + + + Sbjct: 1754 LFLTPVQSYFNKEAKTKNPKLNSPFFYLNKRNPDFNLKRNKRIAKEMYFFNKNEKIKLST 1813 Query: 1047 LKIVKVYLAVKR 1058 L+ +K+ K+ Sbjct: 1814 LQ-IKIKGLEKK 1824 >UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta RepID=A9TK27_PHYPA Length = 1238 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 215/1404 (15%), Positives = 440/1404 (31%), Gaps = 304/1404 (21%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS-- 63 +E++ R K + L+ L SF +F+E + S I +S Sbjct: 70 SEEEVARSAVAKI--IFKGRSLVEHHLRSFNEFMEYGLPAMF---EEAGSFDCIPDHSVL 124 Query: 64 --------GNSELQYVSYRLGEPVFD-------------VQECQIRGVTYSAPLRVKLRL 102 + + Y +G+P E ++R ++YSA L V + L Sbjct: 125 VDSGIGVRKWARIVYGEVAVGKPYTTFTREGVKEVVDLLPHEARLRNLSYSAHLYVNMTL 184 Query: 103 VIY----EREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFD 158 + ++ + + K + +G++P+M ++ ++G Sbjct: 185 EVRSQGNKKTQNPEDMIETKTDTICVGKVPVMVNSSFCHLHG------------------ 226 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE 218 + + S D F I K+ L E Sbjct: 227 ------------------LSEKDSVAKGHCSFDDGGFFIIKGSEKV--------LIAQEE 260 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 + + V + R + P + +G+ +R+ Sbjct: 261 KAHQSIY--VSYLKRTDTWIATYSPT----------WRGFNSNQMNRGKTFVKLRMRKKA 308 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + + E + ++ + S E + + + + L S + + Sbjct: 309 EL-LVGVPGLTEPVPLVILFRALGTSSDKEFLESICYDSTDSRFHDLLLSSIWDADLILE 367 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP-PTREAAESLFENLFFSEDRYDL 397 Y + + D++ ++ + +R P+ EA +++ LF Sbjct: 368 EFQSRISYPAGASAIKSVRDQILSVRFLGTKLRNSRHVPSVEAGKTIIGQLFVH------ 421 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 EG + ++ +L G+ DD DH N+R+ G Sbjct: 422 ----------------TEGGYTRKAMLLGYMVNQLCSTFLGRRLEDDKDHFKNKRLDLTG 465 Query: 458 EMAENQFRVGLVRVERAVKERLS---LGDLDTLMPQDMINAKPISAAVKEFFGSSQL--- 511 ++ +QFR + +ER VK RL + D + + ++ ++ F Sbjct: 466 QLLSHQFRKAMAHLERDVKRRLHPYLVKGRDLAPLKTYVTEAIVTKQMQSAFTLGNWNTN 525 Query: 512 --------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 + + NP++ ++H R+ P + + R + +++GR+CP +T Sbjct: 526 EGLKSSGVVAVLKRMNPMATLSHLRQFRLNLPPPM---KPTDPARHPNYSYWGRICPTQT 582 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 +G GLI SL++ + E P V + ++ + Sbjct: 583 SDGAECGLIKSLALTCVVS-SDTPEEPVLHVLSDCGMHSLEEITPLTISMAEKIFV---- 637 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 G +V + + + +Q++ I + Sbjct: 638 --NGRWVGIF------YDYNATLAIVATLRQLRREQLLH---GEIEVARDPKTKAVHIHT 686 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + R P L E+ +A+ + + +A + + + Sbjct: 687 DAGRLLRPLLIVK--------EQKLAMSKQHLKTLRAMSKQESAEACW-NFLLEQQVVEL 737 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE----LALGQN 799 + L R + +ER D P E G Sbjct: 738 LGTEEEEGALIALNRDD----------------LERARKDPDAPLYTHSEIDVSYIFGLG 781 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + +P+ +N + + + K T+++ + Sbjct: 782 A--SVIPFLDHNQ----------ASRNLYQA---------EKHCKQAMGFYTSNLSGRSD 820 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE-EKLLRAIFGEKA--SDVKDS 916 + +L LV T + PE AI + + +DS Sbjct: 821 CSGHQL-----------FYPQKPLV--TTRTWDYLKKPEITNGQVAIVSIQCCGYNQEDS 867 Query: 917 SLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 + + G + T G E+ + + AK+ + L ++ F + Sbjct: 868 IIMNRASIDRGLFRSMHFKTYRGEERHNVIEHFAKPSISIAKRSRNASLNKIDEDGFPHL 927 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 L G + K L + + + + ++L + + Sbjct: 928 GDYLEKGDIIIGK---------LTAEMGNPKLADSSQRLR---------AHENGRVDQVL 969 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 ++ +D +I KV L RR Q GDK + HG KGVI + ED+P+ G D Sbjct: 970 LSSEED----GHRIAKVRLRCSRRPQAGDKFSSMHGQKGVIGAVLNQEDLPFTRQGVVPD 1025 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++NP +P+R + G + ++L + V ++ + Sbjct: 1026 IIINPHALPNRQTV---------------GQLLESLLGKLMAVRGTQQSV---------- 1060 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 P + + + L + G + +G Sbjct: 1061 ----------------------------APFQKQSATRKFMDQLHQSEYQRGGSESMTNG 1092 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHAR-STGSYSLVTQQPLGGKAQFGGQRFGEME 1274 TG + +++G + +L+H+V+DK+ R S G +T+QP+ + GG +FGEME Sbjct: 1093 TTGMRLNSLISIGATFYQRLDHMVEDKIKYRGSGGPVDALTRQPVKNRKNMGGVKFGEME 1152 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNG----------------RTKMYKNIVDGNHQMEPG 1318 + +GA+ TL+E + SD R + K G H ++ Sbjct: 1153 RDCMIGHGASVTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRFCKFCCTGKHVVQIQ 1212 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +P S +L +E+ S+GI + LE + Sbjct: 1213 IPYSCKLLWQELLSMGITLFLETK 1236 >UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax=Euglena RepID=RPOB_EUGGR Length = 1082 Score = 465 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 244/903 (27%), Positives = 413/903 (45%), Gaps = 73/903 (8%) Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 +NG RV + L F K + L + I + G + F+ D Sbjct: 2 VNGC-RVRSNLLDIQRNSFRSFLKKGLV---EELRKIKDIAHEGFRISFQTDNVKY---- 53 Query: 198 IDRRRKLPATIILRA---LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 ++ K+ A L+ + + +++ + + + L E +F Sbjct: 54 --KKPKISAEFALKNGETYSLSVHIPVEVTYNNMFLVRNK---YILFAKIPLMTEKGTFI 108 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 N ++ V + R + + +D + I + + + + Sbjct: 109 FNGNKRIMVNQIIRSPGVYFEKNRYND----SIFATLIPTFGSWLTFKIDQDEGIFVKVD 164 Query: 315 MELS-LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + + L+ L G R + + P ETL+ + E Y++ P Sbjct: 165 KIKTAIPLINFLKCLGLSRKKFFLYL---NDPIFIETLQESESYGIRLEFFEFYKIFFPN 221 Query: 374 EP-PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI-EGSGILSKDDIIDVMKK 431 E A + F +YDL VGR + N + R E + + L +D++ + Sbjct: 222 EVNVRFGNARKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHY 281 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----SLGDLDTL 487 LI+++ G D+ID L N+ +RS+GE+ ++QFR+ L +E ++KE+L T Sbjct: 282 LIELKKGMIPFDEIDDLKNKLVRSIGELLQSQFRIILNELESSLKEKLIFLYKNPSEKTF 341 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 N+ I+ +++FF + LSQ +D N LSE+THKR++S GP GL +ER +V Sbjct: 342 RLSRFFNSYFITNRIRKFFSVNPLSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDV 401 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHY 605 R+++ + YGRVCPIET EG N GLI SL+ + ++YGFLE+P+ KV G + I++ Sbjct: 402 REINTSQYGRVCPIETSEGKNAGLILSLAKDVRVDKYGFLESPFYKVLRGKIETNKGIYF 461 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFV--EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 +S+ +E + +A + + + + L+ + S +D++ +ST Q S+ Sbjct: 462 ISSAQEKYFTVAPFDVFRSSQSNLLDKNKLLGVKRSKIFSYSFSKNIDFISISTDQFTSL 521 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 G L+PFLEH+DANR LMG+NMQRQ++ L + P + TG E + +S T +AK G Sbjct: 522 GTGLVPFLEHNDANRVLMGSNMQRQSLILLEKEVPFIKTGREALINRESDATVLAKSSGK 581 Query: 724 VQYVDASRIVIKVNE---------------------------DEMYPGEAGIDIYNLTKY 756 V Y +IVI+ E + + IY L Sbjct: 582 VIYSSLKKIVIQEEEYCANIEFFNKNYSFFNLLGCLNEISQKNFKLIKKVNQKIYFLESP 641 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 +SN I ++P V GE V +G ++ADG ST G + LG+N+ VA++ W GYNFED++ Sbjct: 642 KKSNHGVYIQKIPIVHEGEWVRKGQIIADGMSTLRGGICLGKNVLVAYLGWEGYNFEDAV 701 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 ++SER+V ED FT+IH+++ + + E I+ IPN + L +GI+ IG+E Sbjct: 702 IISERLVFEDIFTSIHMKKFKTFIVNDEKKGENISMFIPNASLKTIKNLKNNGIIKIGSE 761 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + D+L+G++ K + TP+ K+L A FG K KD SLR P + G V V++ + Sbjct: 762 IKAQDVLIGRIKVK--LKNTPKNKMLIAFFGNKVR--KDVSLRSPRSLVGIVTSVEILCK 817 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 + + + ++ + G I ++ + + D P D Sbjct: 818 KSNCS-------VLIHVAEKRRIQIGDKIAGRHGNKGIISKIVPSIDMPF-LPDGTPVDM 869 Query: 997 WLE 999 L Sbjct: 870 ILN 872 Score = 312 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 148/481 (30%), Positives = 240/481 (49%), Gaps = 67/481 (13%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV+ G V G I+ ++ + +L A G + + +D+ + +S ++ Sbjct: 655 IVHEGEWVRKGQIIADGMSTLRGGICLGKN-VLVAYLGWEGYNFEDAVI-----ISERLV 708 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE----LQILEAGLFSRIRAVLVAGGVE 985 +FT ++K K + +E + + + ++ L+ +I + + A V Sbjct: 709 FEDIFTSIHMKKFKTFIVNDEKKGENISMFIPNASLKTIKNLKNNGIIKIGSEIKAQDVL 768 Query: 986 AE----KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 KL P+++ L ++ + + L + ++ K+ + Sbjct: 769 IGRIKVKLKNTPKNKMLIAFFGNKVR--KDVSLRSPRSLVGIVTSVEILCKKSNCS---- 822 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 V +++A KRRIQ GDK+AGRHGNKG+ISKI P DMP+ +GTPVD++LNPL Sbjct: 823 --------VLIHVAEKRRIQIGDKIAGRHGNKGIISKIVPSIDMPFLPDGTPVDMILNPL 874 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 G+PSRMN+GQ+ E+ L +++ + ++ + + + + A R K D Sbjct: 875 GIPSRMNVGQVFESLLNLSSLFLKERYKIQPFDEVQTSMNSKSFVYKKLNEARKRTKKD- 933 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 L + G+ LYDGR F Sbjct: 934 --------------------------------------WLFNPNYPGKAFLYDGRNCRPF 955 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + PV GY Y+LKL H+V DK+HAR TG YS VTQQPL GK++ GGQRFGEMEVWA+E + Sbjct: 956 DHPVAFGYAYILKLIHMVKDKIHARVTGPYSSVTQQPLRGKSKNGGQRFGEMEVWAIEGF 1015 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 GAAY LQE+LT+KSDDV R++ ++++G + +P +PE+F + + E++SL I+I++ Sbjct: 1016 GAAYLLQELLTIKSDDVLNRSEALFSLINGTYFSKPNIPEAFKLFILEMQSLCIDIKIFT 1075 Query: 1342 E 1342 Sbjct: 1076 N 1076 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 65/372 (17%), Positives = 132/372 (35%), Gaps = 35/372 (9%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 LL IQ +SF+ F+++ GL R + I Q + + +P + Sbjct: 10 NLLDIQRNSFRSFLKK------GLVEELRKIKDIAHEGFRISFQTDNVKYKKPKISAEFA 63 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 G TYS + + + + + ++ + + +IPLMT+ GTF+ NG +R++ Sbjct: 64 LKNGETYSLSVHIPVEVT-------YNNMFLVRNKYILFAKIPLMTEKGTFIFNGNKRIM 116 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKL 204 V+Q+ RSPGV+F+ ++ A +IP GSWL F+ D + +FV++D+ + + Sbjct: 117 VNQIIRSPGVYFEKNRYNDSI------FATLIPTFGSWLTFKIDQDEGIFVKVDKIKTAI 170 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV--- 261 P L+ L + ++ + + E + E F E N + Sbjct: 171 PLINFLKCLGLSRKKFFLYLNDPIFIETLQESESYGIRLEFFEFYKIFFPNEVNVRFGNA 230 Query: 262 ------------YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + G R ++ + + ++ +A I+ G + Sbjct: 231 RKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHYLIELKKGMI 290 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 +L L+ + + + + L +P+ Sbjct: 291 PFDEIDDLKNKLVRSIGELLQSQFRIILNELESSLKEKLIFLYKNPSEKTFRLSRFFNSY 350 Query: 370 MRPGEPPTREAA 381 + Sbjct: 351 FITNRIRKFFSV 362 >UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z1_OEDCA Length = 672 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 220/724 (30%), Positives = 346/724 (47%), Gaps = 86/724 (11%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFDVQ 83 +Q +SF F++ GL + PI+++ N E + Y+L P ++V+ Sbjct: 20 DFTELQRNSFLNFLK------NGLIEELSNRNPIRNHKNNIEFIFYPEYYKLKRPKWNVR 73 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTER 143 E + G +Y A L V +L+ + K I+ + V +G +PLMT G F+ING R Sbjct: 74 ESILLGKSYVAELYVPAQLM-------DKNNKKIQLKWVLIGNLPLMTKRGYFIINGAAR 126 Query: 144 VIVSQLHRSPGVFFDS---------DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 VI++Q+ R PG+++ K + Y A + RG WL D Sbjct: 127 VIMNQIIRGPGIYYSEAIHQYDSFEKKNILMNQSFSRYYADFVSLRGYWLRLSVDKDQFF 186 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + + K+P L A+ + P+RL + Sbjct: 187 WAEMKKTPKIPLLWFLLAIGLNERLLFRYISN----------------PKRLLHNLHNSL 230 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 ++K +++ + + K N Sbjct: 231 KSKTQLALIKKLQKLQHIQLNVSNNIEKKQ----------------------------KN 262 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 +++ + K + L + L IS+ L L + Sbjct: 263 KTHTIERVQKNDTHTLYQYNFLPDSSLMAWDLISKKLVKKKKMSILKS------------ 310 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +E F + YD+ +GR+ N+ +L+ D++ L+ Sbjct: 311 ---QEQTRKWLFQRFMNPRSYDIGTIGRLALNKKFNLSISTKKHVLTPYDLLFATDYLMK 367 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 + G +DDIDHL NR++R+ E+ + Q +GL+R+E+ +K+RL+ + + +I Sbjct: 368 VEKGLKNLDDIDHLQNRKLRTASEIIQIQIGIGLIRLEKYIKDRLNQIKVFP-KIESLIT 426 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 K +++A+ EFFG+S LSQFMDQ NPL+EITHKRR+++LGPGG+T++ A +R +HPTH Sbjct: 427 TKSLNSALTEFFGTSPLSQFMDQINPLAEITHKRRLTSLGPGGITKDNATMIIRGIHPTH 486 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEG 612 YGR+CP+ETPEG N GL+NS++ YA+ N G +ETP+ KV G V I +LSA +E Sbjct: 487 YGRICPVETPEGKNAGLVNSITTYAKINSSGLIETPFYKVYKGQVMKNLGIFFLSADDEE 546 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 A+ NL G ++ + R K FSR+QV YM +S Q++S+ SL+PF E Sbjct: 547 QINTVAADINLSAFGFLPKNYIPGRKKDNFIRFSRNQVHYMSISPIQMISIATSLVPFFE 606 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 HDDANRALMGANMQRQAVP +R +P+VGTG+E DSG ++ GG+V YV A +I Sbjct: 607 HDDANRALMGANMQRQAVPLIRPKRPIVGTGVEIRSVADSGHIIESRTGGIVSYVSAKKI 666 Query: 733 VIKV 736 ++ Sbjct: 667 IVHT 670 >UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota RepID=Q5KIB7_CRYNE Length = 1193 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 156/937 (16%), Positives = 310/937 (33%), Gaps = 165/937 (17%) Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKER------LSLGDLDTLMPQDMINAKPISAAVKE 504 +R R+ ++ +F + E ++ + + I I+ +K Sbjct: 375 QRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMCVEQNKEFALNMAIRPNTITDGLKY 434 Query: 505 FFGSSQL----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR + + R+ + R +H TH Sbjct: 435 ALATGNWGKRDNTRAGVSQVLNRYTFASTLSHLRRTNT----PIGRDSKAAKPRQLHNTH 490 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL--SAIEEG 612 +G VCP ETPEG GL+ +L++ + + G P + + +++ + Sbjct: 491 WGMVCPAETPEGSACGLVKNLALMSYISV-GSYSAPVMEFLEEWGLEDLSEYQDAPTATK 549 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 +V + +L+ R G+ D + L + + Sbjct: 550 VFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRE----------RELRLYTD 599 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR- 731 R L + Q + R + + + SG G+V+YVDA+ Sbjct: 600 AGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLL--SGAWDKLLSEGIVEYVDAAEE 657 Query: 732 --IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT-CINQMPCVSLGEPVERGDVLADGPS 788 I+I + +++ + L + R+ N + + ++ + PS Sbjct: 658 ETILIAMTPEDLVNARTAHSKHELVR-DRAAHNLESFDPAARIKSTVWSQQYTHMEIHPS 716 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 LG + + +P+ +N S + + + + + R + Sbjct: 717 MILG-------VCASIVPFPDHNQ--SPRNTYQSAMGKQAMGVCLTNY--QLRMDTMVNV 765 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 P ++ L ++L + + AI Sbjct: 766 LYYPQKPLATTRSMEYL-------------------------KFSELPAGQNAIVAIMCY 800 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVF-TRDGVEKDKRALEIEEMQLKQAKKDLS------ 961 + +DS + + + + F + EK K ++ E ++ + L Sbjct: 801 SGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTG 860 Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 + L+ + + K LP D EE + + ++ Sbjct: 861 DRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPED--------SEELGQRTQLHTKRDIST 912 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 + ++ + ++ + VK+ + R Q GDK A RHG KG I Sbjct: 913 PLKSTEQGVVDQVMLSTNGE----GNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYR 968 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ G DI++NP +P + IG + +L + + Sbjct: 969 QEDMPFTAEGLVPDIIINPHAIP---------------SRMTIGHLVECLLSKVSTLT-- 1011 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 G F + ++L+ Sbjct: 1012 -------------------------------------GAEGDATPFTELTVEAVSKVLRA 1034 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 + G LY G TG + + V G Y +L H+VDDK+HAR+ G ++T+QP+ G Sbjct: 1035 KGYQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEG 1094 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------------MY 1305 +++ GG RFGEME + ++G A L+E + SD V Sbjct: 1095 RSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYC 1154 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P + +L +E++++ I + E Sbjct: 1155 SVCRNSTQISQVYIPYAAKLLFQELQAMNIACRMYGE 1191 Score = 106 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 107/347 (30%), Gaps = 84/347 (24%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ------------S 61 + + L+ QL+SF +FIE ++ + Sbjct: 54 YWTVINSFFEEKGLVRQQLESFNEFIENT------MQEIVDDHSRLTLDQFTQYTGVAGD 107 Query: 62 YSGNSELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYERE--- 108 + E+ + L QE ++R +TYSAPL V ++ Sbjct: 108 ETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVD 167 Query: 109 -----------APEGTVKDIKEQEVYMGEIPLMTDN------------------------ 133 +G V+ +E++ +G++P+M + Sbjct: 168 DPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQG 227 Query: 134 GTFVINGTERVIVSQLHRSPG-------------VFFDSDKGKTHSSGKVLYNARIIPY- 179 G F+I+G+E+V+++Q + +F + G+V + + Y Sbjct: 228 GYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMYA 287 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM 239 R S + ++D +P ++ RAL ++ + + ++ Sbjct: 288 RASGTTGGVIRVSLPYTKVD----IPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQ 343 Query: 240 ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 + E + ++ G+ + R + + + Sbjct: 344 PSIEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLP 390 >UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWJ9_MONSK Length = 2108 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 274/946 (28%), Positives = 387/946 (40%), Gaps = 212/946 (22%) Query: 599 VTDEIHYLSAIEEGNYVIAQANS---------NLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 V I S+ E + ++ + + R K E + Sbjct: 1048 VRQNISLFSSELEDEIYVCTGDTLNPCLLNTSKIVANTSLFPPVFPVRHKQEFLTINSTD 1107 Query: 650 ---------VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP + +K V Sbjct: 1108 ALQFIQAPTKLFTGICPIQLISIATSLIPFLEHDDANRALMGSNMQRQAVPFMTPEKAFV 1167 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED--------------------- 739 GTG+E A DS +A G + +VD+ I +K + Sbjct: 1168 GTGLELQAARDSSTLVLADESGQILFVDSQSIKLKTEKHGRTFSELRSPPGTKGQRPQWG 1227 Query: 740 ----EMYPGEAG--------------IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 ++ A I Y LT +T SNQ+TC+ Q P V +GE VE+G Sbjct: 1228 KLSLDLKDQSAHPIEFSPERGGFSKEISSYELTDFTPSNQSTCLKQRPAVEIGEWVEKGS 1287 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR-------------- 827 +LADG T GE+ALG+N+ +A+MPW GYNFED+I+++ER+V ED Sbjct: 1288 LLADGSGTRDGEVALGKNVLLAYMPWEGYNFEDAIVINERLVFEDIYTSVHVERFDVDVR 1347 Query: 828 ----------------------------FTTIHIQEL-----ACVSRDTKL--GPEEIT- 851 F ++ E V+ T G E T Sbjct: 1348 NTKIIQVRNPENSFQLEDTLPENSILNIFRSLVPGEYLTRDLDIVTNKTSRNSGNENSTL 1407 Query: 852 -------------ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT-- 896 ++P L LD +GI+ G V GDIL+GK+ + L Sbjct: 1408 KTSTKDSLEALESINLPPKLPPKLRHLDANGIIKPGTWVQEGDILLGKLQIGPKDNLNNF 1467 Query: 897 ------------------PEEKLLRAIFGEKASD-------------------------- 912 PE +LL AIF + Sbjct: 1468 DIKAQNTPFAQKIQTLPFPEYRLLLAIFDLQNRTPDKTLPTQTSNLEGGKLWPTTFGEKL 1527 Query: 913 -VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK------RALEIEEMQLKQAKKDLSEELQ 965 K+S+L +I + + + E+ + + L Sbjct: 1528 SEKESTLPSSQDKKEQIIGEKSLSSEEGERSPLSDLSAYKNTLPSQNFGSELTSGQDTLN 1587 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 +L A S + K+ + R L+ + Q A Q + Sbjct: 1588 LLAAEKSSNSGLFAHQIKNTSFKVGIGVKGRVLDYVVDGRISIFDGRQKANQNLPPRGSR 1647 Query: 1026 EK------------------KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 E ++ K G+ V ++LA K+RIQ GDKM+ Sbjct: 1648 ETPPGLWPSQREEREGRGGRTPFLEKHKTLIGEGFIQSAATSVSIFLAHKKRIQLGDKMS 1707 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 GRHGNKG++S I P +DMPY ++G PVD+VLNPLGVPSRMN+GQ+LET G++A Sbjct: 1708 GRHGNKGIVSLILPPQDMPYLQDGKPVDVVLNPLGVPSRMNVGQVLETLFGLSAFYSHKV 1767 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 M ++ +A + + A + ++ S + G+P Sbjct: 1768 YRIMPFDER-IAPSQSIEKNTLQENASLSLSRPETSRSLVYGHLRKLKTKAGVPPKRAEI 1826 Query: 1188 DGA------------KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + +L L D G+ L+DGRTGE F +P VGY YM KL Sbjct: 1827 SELGLQKGGYPRTLKSIKKGSQLNWLFDPNNPGKTHLFDGRTGEIFYQPALVGYSYMFKL 1886 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR GEMEVWALE +G A LQE LTVKS Sbjct: 1887 IHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFGTASILQEFLTVKS 1946 Query: 1296 DDVNGRTKMYKNIVDGN-HQMEPGMPESF-------NVLLKEIRSL 1333 D++ R +++ N +E ESF V +E+RSL Sbjct: 1947 DEIYSRNNFLFHLMRRNWESLEKNENESFARDAIKARVAGEELRSL 1992 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 155/626 (24%), Positives = 257/626 (41%), Gaps = 136/626 (21%) Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + + E K I Y G+IPLMT+ G+F+ING RV+V+Q+ R P V+F K Sbjct: 350 MTNHFVERSTRQKKQIF--WFYFGDIPLMTERGSFIINGAPRVLVNQIIRCPSVYF---K 404 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDP-KDNLFVRIDRRRKLPATIILRALNYTTE-- 218 K + Y A + GSWL E D + L+ RID+ + PA I+L L Y + Sbjct: 405 VKLDQKNRRSYTASFLSEYGSWLRLETDRLSNRLWARIDKSPRFPADILLMGLGYVLDSE 464 Query: 219 -----------QILDLFFEKVIFEIRDNKLQMELVPERLRGETA-SFDIEANGKVYVEKG 266 L + + F + + + + + ETA + + + Sbjct: 465 NLNSVKYGLSKNEFKLNAQTLSFGKENKVVINKNIVKNSIFETASTLNSTFPASPFTSLK 524 Query: 267 RRITARHIRQLEKDDV---------------------------------KLIEVPVEYIA 293 + +TA++I+ ++++ K + ++ A Sbjct: 525 KYLTAKYIQVYQENNNLPTRQHDEREVQRPPRNGGEGSVGRTPFLDWIGKGLSKGLQSTA 584 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE---------TLFTNDLDHG 344 G+ +++ + I L + A+L++ I+ Sbjct: 585 GEKQFAKLLNKVENKKISKEQNYLWSSVSARLAEPKISSIQSPRPVLSGSIGKKFSSTKN 644 Query: 345 PYISETLRVDPTNDRLS---------------ALVEIYRMMRPGEPPTREAAESLFENLF 389 T+ D T AL +++ PG + S F N F Sbjct: 645 FVFKNTVENDNTRTPRRTNAGSKSGITINTATALQALWKKCNPGRWTSALGCYSFFYNKF 704 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV------- 442 + RY + VGR++ N+ L R L+ +D++ L +++ + Sbjct: 705 LNPKRYSIGRVGRIRLNKRLRRNPECKIPTLTPEDVLLAFHYLTELKIADAKENTFSLEL 764 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRV------------------------------- 471 DDIDHL NRR+R GE+ +NQFR+ L R+ Sbjct: 765 DDIDHLKNRRVRLPGEILQNQFRLALSRIPYSAIRLQDNKTNIRNEVLQQREKVQRPQGV 824 Query: 472 ---------------------ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 + ++++ + ++E F + Q Sbjct: 825 PLEGRVGRSPPSGEAKKVEQNQNSIRKNFDSVSSSRSEDSVPPGIPAFQSTLRELFNTGQ 884 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 LSQ+MDQ NPL+EITHKRR+S+LGPGG+ R++AGF VR++HP+H+GR+CPIETPEG N G Sbjct: 885 LSQYMDQTNPLAEITHKRRLSSLGPGGVGRDQAGFAVREIHPSHFGRICPIETPEGQNAG 944 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTD 596 L+ SL+ YA+ N+ GFL++P + + Sbjct: 945 LVGSLASYARINDDGFLQSPALPIEN 970 >UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 86 RepID=Q4A245_EHV86 Length = 1156 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 214/1381 (15%), Positives = 413/1381 (29%), Gaps = 316/1381 (22%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSYRLGEPVF------ 80 ++ Q++S+ FIE + + + + S + + + + + P Sbjct: 23 VAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNPSVNRPAIQESDGF 79 Query: 81 ----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY----MGEIPLMTD 132 ++RG+TYS+ + V + I++R + + ++V+ + +IP+M Sbjct: 80 YKPITPHIARLRGLTYSSTVVVDV---IHDRINHTVSPPTLINRKVFRNVIIAQIPVM-- 134 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 RS + S+ + ++ DP Sbjct: 135 -----------------VRSKLCYLADVSENDLSADAKKHECKV------------DPGG 165 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 + + + +P T + V + + + E Sbjct: 166 YFIISGNEKTLIPQT--------------KIRTNHVFIFPSKHGEKHKYTAEV------- 204 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + E R T+ + + V + Sbjct: 205 -------RSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSV----------- 246 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV--DPTNDRLSALVEIYRMM 370 L L I N I + N A+++ Sbjct: 247 ------FILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMDWVGRN 300 Query: 371 RPGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 + T+E+ E +++ SE + + I + Sbjct: 301 VTSDTTRATKESREKYIDHIITSE------------LAPHMGLVNNPETNKKKMIFIGHM 348 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR-----VGLVRVERAVKERLSLGD 483 +++L+ + G+ VDD D N+RI S G + R + + +++++ Sbjct: 349 IQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPR 408 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSS----------------QLSQFMDQNNPLSEITHK 527 T ++++ K I++ +K F + + Q + + ++ + Sbjct: 409 EATFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGAS 468 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE---- 583 R+I+ + RE R +HP+ +G VC +TPEG GL+++L++ + Sbjct: 469 RKINT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAITTRIRIGAPM 524 Query: 584 ---YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 L T + T Y+ N I +D+ + + R G Sbjct: 525 QPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHG 584 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + ++ V S +L+ L D + MQ P + +K Sbjct: 585 NLPFDCS--ISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQN---PAVVPNK--- 636 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 R G+++Y+D++ + M DI + Sbjct: 637 --------------YTRMLREGIIEYIDSAE------QTNMRVAIHHTDI-------EQD 669 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 + T I P + G V P D + R+A+ + Sbjct: 670 EYTHIEIHPALLTGICVS------QIPFCDHNQSP-----RIAYQAAQ----------CK 708 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + + +TT + L +G T P V L S +V GA Sbjct: 709 QAI--GLYTTNFAERLDT------VGHVLATPQKPLVTTRLEELLGTS-VVRSGAV---- 755 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 +V + G Q +I D L + + D Sbjct: 756 -PIVAIMCYSGFNQDDSVLLNQSSI---------DRGLFTSFAYHTIRDEEKGTGADIER 805 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + +K+A ++ + G VL+ V L P++ + Sbjct: 806 FENPKNIPGCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKEGEVR- 864 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 + + + + P VKV R Sbjct: 865 ----------------RDTKRDRSHVLRTDEPVVVDAVFLSKTPEGHGYVKVRTRAIRIP 908 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 GDK + RHG KGV P D P +G DI++NP H + Sbjct: 909 MVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPDIIINP---------------HAIPS 953 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 IG + +L + +G Sbjct: 954 RMTIGMLMEMVLSKVA---------------------------------------CYEGE 974 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 F G I + L+ + G LY+G +GE E + + Y +L H+V Sbjct: 975 TQDGTPFTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLESMIFIAPCYYQRLKHMVV 1034 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV-- 1298 DK HAR+ G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L +SD Sbjct: 1035 DKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFEC 1094 Query: 1299 --NGRTK-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + ++ G H +P S +L++E+ + I+ L Sbjct: 1095 VACEKCGHFAREGTDDTSVKNSGMWCEHCKTGKHCTHTQLPYSMKLLIQELAAAHISATL 1154 Query: 1340 E 1340 E Sbjct: 1155 E 1155 >UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas americana RepID=O21237_RECAM Length = 1478 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 270/984 (27%), Positives = 449/984 (45%), Gaps = 82/984 (8%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 + +R F +++ +P LL I S+ F+++ L+ +S+ ++ Y GN Sbjct: 10 KKDLSLRLGFSSINEIVPIPNLLKISKSSYNNFLQRFVPYSKRLDVGIQSL--LKKYFGN 67 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 ++ Y G + EC G+TYS PL V L++ + + ++ Y+G Sbjct: 68 ---SFICYSFGVSEKNPDECLENGLTYSIPLYVFLKVNMKDNVKDTI-------KKYYIG 117 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 EIPL+TD+G+F+ING E +++QL R GV+ + K K R + R LD Sbjct: 118 EIPLLTDSGSFIINGVENTVINQLVRDSGVYINKSKSP---FIKTSLKIRGLKGRSIQLD 174 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPE 244 + +D + + +ID + + + + + + +++LD F + Sbjct: 175 YFYD--NFIGQKIDTKTLISGKNLNQNITHQEIDKLLDSFKISFKEIGETFTYSITEYKY 232 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD---DVKLIEVPVEYIAGKVVAKD- 300 G F+ + K K + + + + I + + K ++ D Sbjct: 233 CNMGWFIDFNWKEISKYRFIKKNKNIISTSLSFDNNLLANNDYISILNTVVNNKFISNDK 292 Query: 301 -----------YIDESTGELICAANMELSLDLL------AKLSQSGHKRIETLFTNDLDH 343 Y D + +I N + S L + LS + L N + Sbjct: 293 FLNHDLFLLDIYKDNKSIFIIENTNDDFSYPLELLNKVGSHLSSFKNSDFLFLIENKNIN 352 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED-----RYDLS 398 YI L+ P + R S V I + + ++ + +N FF E + L Sbjct: 353 YQYIFINLKEQPDSIRNSLQVVIESKKK--KLLMFFNSKHVLKNDFFLEKDVLFHNFKLG 410 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID--HLGNRRIRSV 456 +GR+K N E L+ D +++ LI I G E D + L NRR ++ Sbjct: 411 PIGRLKINLKFGLN--EKKEELTSIDFTRILRYLIQIDKGFIENDIYEEQSLLNRRFNNI 468 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGD--LDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 GE + L+ E K +S D + ++ + + N + + + S L Q+ Sbjct: 469 GEHLYSCLSDYLISKE-DSKYSVSKEDYIKNQMLFKKINNCRNAFYFLIRYLNKSSLCQY 527 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 +Q N LS + H R++S +GPGGL + E+RDVH + YG++CPIETPEG ++G++N+ Sbjct: 528 TEQANALSYLGHTRKVSIMGPGGLKNDNISLEMRDVHISTYGKICPIETPEGKSVGVVNN 587 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL- 633 LS+Y +TN LETPY V + VT+ IHYL+ EE Y IA A L ++G F+ Sbjct: 588 LSLYTRTNTLFQLETPYIFVKENFVTNIIHYLTPQEEKYYKIAHATEVLKKDGSFLNTKE 647 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + CR VDY+++S+ Q+ S+ AS+IPFLEH+D NRALMG+NMQ+QAVP L Sbjct: 648 IYCRYLHSLITVDSKNVDYIEMSSGQITSLSASMIPFLEHNDGNRALMGSNMQKQAVPLL 707 Query: 694 RADKPLVGTGMERAVAVD-----SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 +K L+GTG+E + D + V + +I+ K N++ ++ + Sbjct: 708 NLEKSLIGTGIEGIIGRDFFNISKNLLLEKMTNENVFGISILKILKKENKNIIFSQFVDL 767 Query: 749 DI-----YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 I Y+ K+ SNQ T I+ + ++ G S EL+LG N+ V Sbjct: 768 FIKNHFLYSTIKHKNSNQKTDIDFKYVNKKNINIFENNIDNIGYSIKNNELSLGNNVLVG 827 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 F NG+ FEDSI++SER+V+++ F +IH++ + K E I + + Sbjct: 828 FTSMNGHTFEDSIVISERIVRDNYFQSIHLEVYKTMEMYEKDSQEIIRNFL------STD 881 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 LD G++++G V DIL+GK K + L+ + KL+ V D S+R N Sbjct: 882 FLDVDGVIHLGTNVCTNDILIGK--EKRQLLLSEKNKLI----------VYDKSIRYKNK 929 Query: 924 VSGTVIDVQVFTRDGVEKDKRALE 947 G VI + F V+ +K + Sbjct: 930 KKGVVIQIAKFFDSLVDLNKHYIT 953 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 138/296 (46%), Positives = 196/296 (66%), Gaps = 4/296 (1%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L++VKV +A K IQ GDK+ GR+GNKGVIS+I +EDMPY +GTP+DIVL+PLGV SR Sbjct: 1183 LRMVKVVVACKHNIQVGDKLTGRYGNKGVISRILSLEDMPYLRDGTPLDIVLSPLGVSSR 1242 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MNIGQ+LE HLG+A + K+ +++ V K R+++ Y ++ L +D Sbjct: 1243 MNIGQLLECHLGLAGVELSKKLQQIIQTYDIVGKSRKYLSMLYRNKKELLLLNSL---ND 1299 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 +++ L +N+ G+PI+TP+F+ A +I LL++ L ++ + DG TG + VT Sbjct: 1300 SQIICLFKNISHGIPISTPIFNSANNFDIDNLLRISGLNIQSKVTIIDGITGVVLDNKVT 1359 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VGYMYM+KLNHL+D K+H RSTG Y+++TQQ GK++ GGQR GEMEVWAL+AYGAAYT Sbjct: 1360 VGYMYMMKLNHLIDHKIHGRSTGPYNIITQQASKGKSRNGGQRLGEMEVWALQAYGAAYT 1419 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 LQEMLT KSD R+ +N + G +P +F +L E+R LG+ + + Sbjct: 1420 LQEMLTFKSDSTISRSSFLQNFIRG-KTSRIDIPRTFKLLRDELRVLGMELNFIVK 1474 >UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSL6_9ALVE Length = 1255 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 186/1114 (16%), Positives = 338/1114 (30%), Gaps = 215/1114 (19%) Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 A + S L +L G + + + + R AL + Sbjct: 273 CLAPDELNSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSK 332 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-------GSGILSK 422 R A SL +D + R LL + G Sbjct: 333 FEVVFREKRGAGVSLDGIALEVDDAAMSPVEKSVSVARRLLDSLMLVHCPKGAEGGKAKV 392 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV----RVE-----R 473 D ++ + +KL+ + G D+ D + + + G++ + L R+E + Sbjct: 393 DCLVLIFRKLMALVRGDIAPDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKK 452 Query: 474 AVKERLSLGDLDTLMPQDMINAKP-----ISAAVKEFFGSSQLSQ--------------F 514 + + ++ G T++ ++I ++ ++ F + ++ Sbjct: 453 SRQAQVGKGRAPTVLSAELIRNTFMGVCDVTKRMESFLATGNITSRSGLDLQQTTGFTVV 512 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 D+ N ++H R A+ G +E VR + P +G +CP+ TP+G GL+N Sbjct: 513 ADKLNAYRYLSHFR---AVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNH 569 Query: 575 LSVYAQT-----NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 L+ Q + G + ++ + + S NY A N+ + +G Sbjct: 570 LAAPCQPVVRIASPEGVIPGLEEELA-SLGVQLVRS-SKTSTANY-GAGENAYVTLDGRV 626 Query: 630 VEDLVTCR--------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 + + R + + +++ Q + L F R + Sbjct: 627 LGKVARSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPASFEGLWLFTGPCRMVRPV- 685 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 ++ LV G V + T I +K E+ Sbjct: 686 --------RDLATGNEELV--GPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIEL 735 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 P I LT ++ NQ P + + +L + + + Sbjct: 736 SPISMLSVIAGLTPFSNH------NQSP-----RNMYQCQMLKQTMAIPYLNHPYRTDNK 784 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 V + + + + ++S G I A I + G Sbjct: 785 VYKITYPQFPMVRTTVLS-----------------EANFDVKPAGTNAIVAVIAHSGFDM 827 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L ++ K G K Sbjct: 828 EDAL-----------------IISK--------------------GSYDRGFKH------ 844 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 G+V +V K + + + + ++ L+ I + Sbjct: 845 ----GSVYKTKVINCP--PKGTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHE 898 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 G P R L G + K + ++ + E + + Sbjct: 899 GD---------PICRVLNKGTGE-AKLEKYKEGEVAWVEQVNMIGGGGWWGGGAGARNPG 948 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 + + + L + R GDK + RHG KGV++ + P DMP+ +G DI+ NP Sbjct: 949 GIKDGSERMSIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMPFSTSGISPDIMFNPH 1008 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 G+PSRM IG ++E G AA G + V+ Sbjct: 1009 GMPSRMTIGMLIEFMAGKAAALTGMPV------------------------------VNA 1038 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 ++F L + D E LK G LY G GE Sbjct: 1039 NSFRQYRGKGLLDTEHNNEKDPYAPGDTTAHEYFGETLKKFGYEYLGAEELYSGMHGEPL 1098 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L ++ Sbjct: 1099 KTHIYMGVVYYQRLRHMVLDKFQVRATGPIDPLTRQPVKGRKKHGGVRFGEMERDSLISH 1158 Query: 1282 GAAYTLQEMLTVKSDDVNG-RTKMYKNIVDGNHQME------------------------ 1316 G + L + L SD +I+ H E Sbjct: 1159 GTSALLADRLLKCSDACEDWVCPECGSILSYAHSPETVKRYSGREAAAQAPICRACSTER 1218 Query: 1317 --------PGMPESFNVLLKEIRSLGINIELEDE 1342 +P F + E S+ I + L + Sbjct: 1219 GIEVRCAAVTLPYVFRYMSAEFASMNIRLRLRVK 1252 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 148/959 (15%), Positives = 293/959 (30%), Gaps = 177/959 (18%) Query: 28 LSIQLDSFQKFI-----EQDPEGQYGLEAAFRSVFPIQSYSGN-SELQYVSYRLG----- 76 + +DSF F+ + GL S + + G L Sbjct: 47 VKPHVDSFNLFVITGLTPEATNEILGLLPDDISPAEMTWHDGTTVRCWLSDLSLHQPIRG 106 Query: 77 ----EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 +P C+ +TYS L + + + E P + V +G +P+M Sbjct: 107 EDVLDPRLLPTHCRQAHITYSGELSATVNVSLGTGEPPVQMAR------VPLGLVPIMVR 160 Query: 133 N------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + G F++NG E+VI + F + + S+ Sbjct: 161 SEACHLHGMPPSKMVQCGEDPDERGGYFIVNGNEKVIRLLIMPKSN-FPVALYRPSFSNR 219 Query: 169 KVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRK---LPATIILRALNYTTE 218 LY+A + R + + +VR + +P ++L+ L Sbjct: 220 GPLYSAYAVQMRSMRPDLTTQTVTMHYRKDGTCWVRFTYLKNEYLIPLMLLLKCLAPDEL 279 Query: 219 QILDLFFEKVIFEIRDNKLQMELV---PERLRGETASFDIEANGKVYVEKGRRITARHIR 275 FE + + + E V E++R + + G + R Sbjct: 280 NSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSKF-EVVFR 338 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET 335 + V L + +E + ++ ++ LL L + Sbjct: 339 EKRGAGVSLDGIALEV------------DDAAMSPVEKSVSVARRLLDSLMLVHCPKGAE 386 Query: 336 LFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRY 395 +D I L + + + P + E L F Sbjct: 387 GGKAKVDCLVLIFRKL-----------MALVRGDIAPDNADAMDVQELLLPGQLFGA--- 432 Query: 396 DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRS 455 L +E+ S +L + + KK + GKG + Sbjct: 433 --------------LLKEVLQSSLLRLE--GALAKKSRQAQVGKGRAPTV---------L 467 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 E+ N F + + D+ M + S + + ++ + Sbjct: 468 SAELIRNTF--------------MGVCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVA 513 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 D+ N ++H R A+ G +E VR + P +G +CP+ TP+G GL+N L Sbjct: 514 DKLNAYRYLSHFR---AVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHL 570 Query: 576 SVYAQT-----NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 + Q + G + ++ + + S NY A N+ + +G + Sbjct: 571 AAPCQPVVRIASPEGVIPGLEEELA-SLGVQLVRS-SKTSTANY-GAGENAYVTLDGRVL 627 Query: 631 EDLVTCR--------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL-- 680 + R + + +++ Q + L F R + Sbjct: 628 GKVARSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPASFEGLWLFTGPCRMVRPVRD 687 Query: 681 -------MGANMQRQAVPTLRADKPLVGTGMERAVAVD----------SGVTAVAKRGGV 723 + M++ + + L + +V + S ++ ++ G+ Sbjct: 688 LATGNEELVGPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSVIAGL 747 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 + + ++ + + +M I L R++ P P+ R VL Sbjct: 748 TPFSNHNQSPRNMYQCQMLKQTMA--IPYLNHPYRTDNKVYKITYPQF----PMVRTTVL 801 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS-RD 842 ++ + G N VA + +G++ ED++++S+ + Sbjct: 802 SEA---NFDVKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKTKVINCPPK 858 Query: 843 TKLGPEEITADIPN---VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 +G N GE + LD GI YIG +V GD + +V KG + E Sbjct: 859 GTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHEGDPIC-RVLNKGTGEAKLE 916 >UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata RepID=B6AI41_9CRYT Length = 1341 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 218/1445 (15%), Positives = 429/1445 (29%), Gaps = 300/1445 (20%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI-QSYS---------------GNSELQYV 71 + ++SF F+ GL ++ I ++ Sbjct: 51 VWPHIESFNCFL------LTGLSNIVINLPSIYIDSDYVIDDCELNVGYIPREYLRIKVT 104 Query: 72 SYRLGEPVFDVQE----------CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++G+P+F E + ++YSAPL + E E + K Sbjct: 105 CIKVGKPIFGSTESSNTKMYPCSARNGHLSYSAPLWI-------EFECYNSSSKSSVRHN 157 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 ++ G IP+M + + SP + + G Sbjct: 158 LFAGSIPIMVRS----------LACHLYSLSPNELVANGEDPNEVGG------------- 194 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 + + +R +++ + L+ +T+ I + ++ +R++ Sbjct: 195 ----YFIINGNERVIRYVIQQRCNYPVGLKRSRFTSRDIFGTEYAILLRSLRNDGTSTAN 250 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 L G T + + + + + ++ + + + +D Sbjct: 251 Y---LYGTTDNQCVYR--ILLNRQEWLLPFWNVLLAVGSIYDAKTLRNKILQYCCNTRDE 305 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 D G + L + L S + + I Sbjct: 306 YDPLYGVINM-------LTIEWGLDNSSGVENSVIPPSYDGAFGDIEII--------ENR 350 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 L + +++ G +F+ GR + +L E + L Sbjct: 351 HLHNLGKLVWEG-------------VVFYLPPGSLYQDAGRFIIDNHILVHLPEWNAKL- 396 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----- 476 + +I + KL+ ++ G+ + ID + I S G + + + + + ++ Sbjct: 397 -ECLILMFIKLLKLQYGQIREESIDSFAYQEILSSGNLYASVLKDAIFSFLQKIRMIYIT 455 Query: 477 ERLSLGDLDT-------------------------LMPQDMINAKPISAAVKEFFGSSQ- 510 E + + + N I ++ F + Sbjct: 456 EIRNRNSSKSEKEASDELPLPYSSAALDLLRDDSFFKTSLIRNISMIPKRIQYFMATGNI 515 Query: 511 ------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + D+ N ++H R A+ G +VR + +G + Sbjct: 516 KTTQLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMKTTDVRKLMGETWGFL 572 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV-----------TDGVVTDEIHYLS 607 CP+ TP+G GL+ LS +++ + + DG+ T I + S Sbjct: 573 CPVHTPDGEPCGLLLHLSQDTIPVTQFEIQSTLKNLRDYLVGQNIPCDDGLGTLSIQWGS 632 Query: 608 AIEEGNYV-------------IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 + YV + + + E L + ++ + Sbjct: 633 LNLDDIYVPDLSKSVPVMLDGRVMFHIPKLKFTFWQEKLRNLK-WSKTPSILPVHTEIAC 691 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDS 712 + V + + F R ++ + P + + T E ++ Sbjct: 692 IPPD--CGVFSGIFMFTAPGRLVRPVLHLKSNKIDWIGPLAQPWMDIGVTEEETQKSIKL 749 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 + G S I N D+ E Y L N +Q Sbjct: 750 YNLQMKLFGLYRNDNITSDIETTDNMDKNQIEEMIKKDYTLG----CNPVMYTHQ----- 800 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 + +L+ S +P+ +N + +++++ T + Sbjct: 801 ---ELHPSTILSITASL---------------IPYAHHNQSPRNMYQCQMLKQTMGTPCY 842 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 +R + IT P V G Sbjct: 843 SYPYRTDNRMYR----IITPQNPLVITKGY-------------------------ASYGF 873 Query: 893 TQLTPEEKLLRAIFGEKASDVKDS-SLRVPNGVSGT----VIDVQVFTRDGVEKDKRALE 947 ++ + A+ D++D+ L + G V ++ K++ + Sbjct: 874 SEYPTGTNAIVAVISHSGYDMEDAMVLNKASYERGIFHACVYKTKILFAAPNSVIKKS-D 932 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT--DE 1005 E + D ++ L A I LV G + + Sbjct: 933 AESYRFHNIGPDGKLVIKELGADGLPMIGQKLVKGSPMCRVEKLGSGGVISNAIVQTYHD 992 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 +++ +E++ L E G + + G + + + L + R GDK Sbjct: 993 DEEAYVEKINRVGSGLSTESHSDSTLGGSGGPGGSEYSSGYGEKISLKLRIVRNPMVGDK 1052 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 A RHG KG++S + P E+MP+ E+G DI+ NP G PSRM +G ++E G AA G Sbjct: 1053 FASRHGQKGILSMLWPHENMPFGESGIVPDILFNPHGFPSRMTVGMLIECMAGKAACLHG 1112 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 +D + F + K M I Sbjct: 1113 ------------------------------ASALDATPFHRNITDKQTILEDKEMGIDLS 1142 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 + + L G L++G TG + + +G +Y +L H+V DK Sbjct: 1143 --KQSTVDYFGKALLKTGFQYFGCEPLFNGMTGTEMPCHIFMGVIYYQRLRHMVADKAQV 1200 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 RSTG +T+QP+ G+ + GG RFGEME +L +YG + + + L SD+ Y Sbjct: 1201 RSTGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSIIADRLLKCSDEHKAYVCPY 1260 Query: 1306 KNIVDGNHQME----------------------------PGMPESFNVLLKEIRSLGINI 1337 ++ +P F L E+ ++ I I Sbjct: 1261 CGLIFSAILPRKTTNFQNRLATTLPHVAICKVCKTPCRLITLPYVFRYLCNELATMNIVI 1320 Query: 1338 ELEDE 1342 LE E Sbjct: 1321 RLELE 1325 >UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota RepID=Q5CSG7_CRYPV Length = 1281 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 160/1046 (15%), Positives = 312/1046 (29%), Gaps = 209/1046 (19%) Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 L GR + +L E + L + +I + KLI ++ + + ID + + S Sbjct: 333 LQEAGRFLIDNYVLVHLEEWNAKL--ECLILMFIKLIKLQLNEIREESIDSFAYQELLSP 390 Query: 457 GEMAENQFRVGLVRVERAVK-------------ERLSLGDLDTLMPQDMI-------NAK 496 G + F+ + + ++ + + L+ N Sbjct: 391 GNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGVNLLRDTAYFKSVLSKNIS 450 Query: 497 PISAAVKEFFGSSQ-------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 I ++ F + + D+ N ++H R A+ G Sbjct: 451 MIPKRLQYFMATGNVKTTQLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMK 507 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 +VR + +G +CP+ TP+G GL+ LS + R++ + +++ I Sbjct: 508 TTDVRKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQWDSQETLRRLRNYLISHGI 567 Query: 604 ---------------------HYLSAIEEGNYVI-----AQANSNLDEEGHFVEDLVTCR 637 S + + + ++ + L T + Sbjct: 568 SCDDGLGSLSSTWGIESSSRDDLYSPDLTKSIPVMLDGRVLFHIPREDFMVWENKLRTLK 627 Query: 638 SKGESSLFSRDQVDYMDVST-------QQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + + V + + L+ + H + + + + + Sbjct: 628 -WQTNPSVLPVHAEIACVPPDSGMFSGIYIFTAPGRLVRPIMHLETAQVDWIGPLGQPWM 686 Query: 691 PT-LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 + ++ T + G I +E+++ + Sbjct: 687 NIGVTEEETRKSTKLLEIQKRLIG------------------ISDTESEEQLKNDLKALK 728 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 L K + + ++ +P + +L+ S +P+ Sbjct: 729 --KLIK----DNDRVLSSVPVNYTHMELHPSTILSVTASL---------------IPYAH 767 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 +N + C +G L Sbjct: 768 HNQ----------SPRNM--------YQCQMLKQTMGT-PCLNHPYRTDNKMYRLLT--- 805 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS-----SLRVPNGV 924 +T G + G ++ + A+ D++D+ S Sbjct: 806 -PQEPTIITKG------YSSFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMF 858 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 V ++ + K++ + E D ++ L A I L G Sbjct: 859 HACVYKTKIISAAPPSATKKS-DAESYFFHNIGPDGELVVKELSADGLPNIGQRLTKGSP 917 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + E + ++ G + Sbjct: 918 ICRVERIGSGGGPSNATIQTYHDDEVAFVEKINRIASGISIELQQDSLSGGGGDGASSSS 977 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 G + V + L + R GDK A RHG KG++S + P E+MP+ E+G DI+ NP G P Sbjct: 978 GYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSESGMVPDILFNPHGFP 1037 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM IG +LE+ G AA G + +D + F Sbjct: 1038 SRMTIGMLLESMGGKAACIHGAR------------------------------SLDATPF 1067 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + L+ + + + L+ G LY+G TG + Sbjct: 1068 NINISDDLSRSEEN--CEDDKAGEKTTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCH 1125 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L +YG + Sbjct: 1126 IFMGVIYYQRLRHMVADKAQVRATGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVS 1185 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIV------------------------------DGNHQ 1314 L + L + SD+ ++ + Sbjct: 1186 SILVDRLLICSDEHRAYVCPKCGLIISSISKRAMAQSMSSSKLSNCIPPIAVCRVCKSPC 1245 Query: 1315 MEPGMPESFNVLLKEIRSLGINIELE 1340 +P F L E+ ++ I I L Sbjct: 1246 RIITLPYIFRYLSNELAAMNIVIRLH 1271 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 134/1001 (13%), Positives = 283/1001 (28%), Gaps = 240/1001 (23%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS----EL-------QYVSY--- 73 + ++SF F+ GL+ +++ I SG EL +Y+ Sbjct: 13 VWPHIESFNTFL------SVGLKNIVKNLPKIYVDSGFIQDDCELNAAYSPAEYLRIGVT 66 Query: 74 --RLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++G+P Q + ++YSAPL E E ++ + + Sbjct: 67 SAKIGKPIFGNSESSGTKLTPQHARNGHISYSAPL-------WLEFEGYNSSLDTVSKHS 119 Query: 122 VYMGEIPLMTDN------------------------GTFVINGTERV--IVSQLHRSPGV 155 +Y G IP+M + G F+ING ERV V Q + + Sbjct: 120 IYAGTIPIMVKSSSCHLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPI 179 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYR------GSWLDFEFDPKDNLFVRIDRRR-KLPATI 208 + T S Y + R ++L D + V ++R+ +P Sbjct: 180 GLKRPRFATFDSFGSEYAVLMRSLRDDGTSTANYLYGTSDHQCIYRVLLNRQEWLIPFWP 239 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG-ETASFDIEANGKVYVEKGR 267 +L A+ ++ + + + + + + V V+ Sbjct: 240 LLMAVG--------SIYDSNVLRSKILQYCNPKDENLFNTINMLTLEWGLDNSVGVDAE- 290 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 + D ++E + G++V + + L + L + Sbjct: 291 -FNSVSFGNKGPGDTDILENRYLHQIGRLVWE--------------GVAFHLPPGSLLQE 335 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 +G I+ L+ E L + L EI E+ +S Sbjct: 336 AGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKLQLNEI----------REESIDSFAYQ 385 Query: 388 LFFSEDRYD--LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 S L F + + + S + Sbjct: 386 ELLSPGNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGE---------------------- 423 Query: 446 DHLGNRRIRSVGEMAEN--QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVK 503 N+ ++ + + F+ L + + +RL Q + + Sbjct: 424 ---KNKESKNGVNLLRDTAYFKSVLSKNISMIPKRL----------QYFMATGNVKTTQL 470 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 + S + D+ N ++H R A+ G +VR + +G +CP+ T Sbjct: 471 DLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMKTTDVRKLTGETWGFLCPVHT 527 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI-------------------- 603 P+G GL+ LS + R++ + +++ I Sbjct: 528 PDGEPCGLLLHLSQDCIPVTQWDSQETLRRLRNYLISHGISCDDGLGSLSSTWGIESSSR 587 Query: 604 -HYLSAIEEGNYVI-----AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 S + + + ++ + L T + + + V Sbjct: 588 DDLYSPDLTKSIPVMLDGRVLFHIPREDFMVWENKLRTLK-WQTNPSVLPVHAEIACVPP 646 Query: 658 -------QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP------------ 698 + + L+ + H + + + + + ++ Sbjct: 647 DSGMFSGIYIFTAPGRLVRPIMHLETAQVDWIGPLGQPWMNIGVTEEETRKSTKLLEIQK 706 Query: 699 ----LVGTGMERAVAVD---------------------------SGVTAVAKRGGVVQYV 727 + T E + D T ++ ++ Y Sbjct: 707 RLIGISDTESEEQLKNDLKALKKLIKDNDRVLSSVPVNYTHMELHPSTILSVTASLIPYA 766 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 ++ + + +M G L R++ P + +G Sbjct: 767 HHNQSPRNMYQCQMLKQTMG--TPCLNHPYRTDNKMYRLLTPQEPT--IITKG-----YS 817 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR-----D 842 S E G N VA M ++GY+ ED++++++ F + + Sbjct: 818 SFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMFHACVYKTKIISAAPPSATK 877 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 +I GE + +L G+ IG +T G + Sbjct: 878 KSDAESYFFHNIGPDGELVVKELSADGLPNIGQRLTKGSPI 918 >UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia intestinalis RepID=A8B9W7_GIALA Length = 1293 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 216/1444 (14%), Positives = 448/1444 (31%), Gaps = 278/1444 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG------NS 66 K + L ++Q+DS+ F++ ++ S PIQ N Sbjct: 12 KVWKVVDSWFYCRGLAAMQIDSYNHFVKHT------MKNIMASFPPIQVTRTENFCCYNH 65 Query: 67 ELQYVSYRLGE-PVFDVQECQIRGVTYSAPLRVKLRLVI--YEREAPEGTVKDIKEQE-- 121 L + +L +C+I+ +Y A ++VK+ I Y EG V+++ + Sbjct: 66 ILSFSDPQLEPNVHIKPNDCRIQSSSYMAAIKVKISYTIQQYSFSNNEGLVQEVTYEPKL 125 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 + P+M ++ +N T +V S + + + + +I G Sbjct: 126 IDFCLFPVMVNSCLCYLN-TNKVAGSDIKAHRIINDECPYDEGGYFIIRGAEKAVIAQEG 184 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 + P L + D K+P T L + N T + + Sbjct: 185 NR------PNRLLILPGDPGSKIPYTAQLVSTNSTKNLHSKVVLKYW------------- 225 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 G+ + + ++ + D + + + A+D Sbjct: 226 ------------STNKWGRTIQDINQPQITFTMQGIRDDLPLFLLILALWQDNVYAARDL 273 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + + ++ EL LL P + + Sbjct: 274 L---SIVVPDESDTELIEHLLPSY-----------------------NLFCSTPQSSKDK 307 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 + + + GE ++A++ ++ L L +G + Sbjct: 308 CIEFLAGRLVVGEQ--MDSAKAKYDRLMSHLSTRLLPHIG-----------VTPEFHLDK 354 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR----VGLVRVERAVKE 477 I + L+ G+ DD DH G +R++ G + ++FR + L R+ R + + Sbjct: 355 AFFIGYMTNLLLQTVVGRRSPDDRDHWGGKRLQLTGSLLADKFRFEYELFLRRLARKLHD 414 Query: 478 RLSLGDLDT-----------------------------------LMPQDMINAKPISAAV 502 S+ + L + IS + Sbjct: 415 TGSILKVKEDISMVSPNIEGSSFIPQSKYDTHGKVPGLEDPRRLLDRIKVAATSYISKNI 474 Query: 503 KEFFGSS-------------QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 + +SQ + + + S ++ RR S+ + R Sbjct: 475 TSALSTGTWKTNEVVGNTKSGVSQSLVRLSYTSALSQIRRSSS----SVEETSKAIGPRL 530 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN-EYGFLETPYRKVTDGVVTDEIHYLSA 608 +H T +G +CP ETPEG +GLI + S+ A + E RK+ H + Sbjct: 531 LHTTQFGYMCPAETPEGAKVGLIKNFSLMANVTLDNPKDEHDLRKLLTEYRVQASHGPIS 590 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 + + + + A + + F+ E + + V S + Sbjct: 591 VLKSFHTVTNAKKLVSDVKIFLNGSWLGFIDREYVQRLITDLKRWRFEGKINREVSISYL 650 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGT----------GMERAVAVDSGVTAVA 718 + ++ R P + T E V + + + Sbjct: 651 -----AHKQEISISSDEGRVTRPVFVVITDIHPTLKLVTNLSLAITEEDVETLATIPQME 705 Query: 719 KRGGVVQYVDASRIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 + ++ + + +I+ + +E +DIY+ + Q + Sbjct: 706 QWNSLLSGLGTGKCMIEFLDPNEEEMALICMDIYHFKEE---------IQKAHTIRDIIL 756 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 G+ A + L N + S+++S T++ Sbjct: 757 AHGEDNAINYIKAHN-IPLANN-------YTHLEIHPSMVLS-------AITSLIPFPDH 801 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG-KVTPKGETQLT 896 S + L + D SGI LV + P + + Sbjct: 802 NQSPRNLYQASMGKQAVGIYALNYLKRFDTSGI---NVMHYPQLPLVTTRSMPHVKFRYL 858 Query: 897 P-EEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 P + ++ AI + +DS + + V G + T + + + +++ Sbjct: 859 PAGQNVIIAIAVYSGFNQEDSLIMSQSAVDRGFMRATYYHTYEEMISSAASSINAPDRIE 918 Query: 955 QAKKDLSEELQILEA---------GLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + ++ ++ R+ + + + K+ R T + Sbjct: 919 KFCRPIGPNIKGIKDPGCASYLEADGLPRVGNAVNSQRLIIGKIRPNKRSMNSRAVSTYD 978 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK---IVKVYLAVKRRIQP 1062 + L+ E+ + ++ +++G D + + KV + R Q Sbjct: 979 FQDVSLKVKMEETGRVDSVIIAPDLREQSFLSEGVDSNTTGAEGSLLAKVRVRSSRVPQL 1038 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + RHG KG + + ED+P+ +G DI++NP +P + Sbjct: 1039 GDKFSSRHGQKGTVGMLLRHEDLPFTLDGITPDIIMNPHAIP---------------SRM 1083 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 IG + ++ ++ L+ + G Sbjct: 1084 TIGQLMESV----------------------------------ASKLGALSGHEVDGTAF 1109 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 P G+ + +I L + +G TGE + +G + +L H+V DK Sbjct: 1110 NAPP--GSTDKQIAADLHARGYQKHNYEAMMNGMTGEMMTYRIFIGPTFYQRLKHMVLDK 1167 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------ 1296 + +R+TG +T+QP G++ +GG R GEME A A+GA L++ L SD Sbjct: 1168 ISSRNTGPIVTLTRQPNEGRSNYGGMRIGEMEKDAFIAHGATAILRDRLLFSSDVSEFLV 1227 Query: 1297 ------------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 + + + +P + + +EI +G+ Sbjct: 1228 CQNCGIICWHADSRKLTTKKSPHCMICSESSTTDSFARITIPYAAKLFFQEIIGMGVFPR 1287 Query: 1339 LEDE 1342 +E E Sbjct: 1288 IEVE 1291 >UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B8_CHLMO Length = 795 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 213/808 (26%), Positives = 351/808 (43%), Gaps = 106/808 (13%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 V +P L IQ SF +E+ GL F PI S + E+ + Y+L Sbjct: 2 LNSVYYLPDFLEIQRQSFFTLLEK------GLIDEFSKRNPITSKKKDVEVYFYPEYYKL 55 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 P + ++ +R +Y++ L + +++ + I+ + Y+G +PLMT G Sbjct: 56 TLPTYSPRQAILRCKSYTSKLYMPVQITFKK-------TNTIRLKWAYIGNLPLMTKRGH 108 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDK--------GKTHSSGKVLYNARIIPYRGSWLDFE 187 F++NG R+IV+Q+ RSPG+++ + Y A +I RG+WL E Sbjct: 109 FILNGAPRIIVNQIIRSPGIYYQEKLYERFTDKLSDKPNVTYKRYYADLICLRGTWLRLE 168 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF---------------------- 225 D +++ + + K+P L + + IL+ Sbjct: 169 IDRDKDIWAQTKKGPKIPIYWYLIGMGLSEHIILNSILEPQRILQNLAPFTLDRKSTRKK 228 Query: 226 -EKVIFEIRDNKLQMELVPERLRG----ETASFDIEANGKVYVEKG--------RRITAR 272 + E+ E R ET++ + KG RR Sbjct: 229 RNDYSYVKNPPDAWKEIYLELSRSPKSVETSTSATTSKDNSLYSKGSTTKDESPRRTNKV 288 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE---------------------STGELIC 311 R K ++ K + +++ +L Sbjct: 289 DARNALTSKKKSLQKEASEQGRKWLFNKFMNPRAYDLSRQGRAAFNRKLGLKIDENQLTL 348 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDH----GPYISETL-----RVDPTNDRLSA 362 A LS + G K I+ + G I + R++ T Sbjct: 349 TAQDLLSATDYLIKVEKGLKPIDDIDHLKNRRVRTSGELIQIQIGIAVVRLEKTIREKIN 408 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS---------LLREE 413 E+ G+ P S F+ ++ L + + ++ ++ Sbjct: 409 KTEMQFSFSLGDAPRTSRISSNFKKDSSTQKLKQLRSSTGLINDQIAPITTDITNFPTKQ 468 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG---EMAENQFRVGLVR 470 ++D + ++ N + + +L I S G +N R + Sbjct: 469 PIEFQTKNEDSTYVEFSRPVNPENSNIKSNSEKNL----ISSSGMVTTTTKNNTRASTKK 524 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 + + L TL ++IN K ++A++EFFG+S LSQFMDQ NPL+EITHKRR+ Sbjct: 525 TKPLLFGNLQKNQTKTLNISNLINNKSFNSALREFFGTSPLSQFMDQINPLAEITHKRRL 584 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 S++GPGG+TR+ A E+R +HPTHYGR+CP+ETPEG N GL+NSL+ Y++ N G LE+P Sbjct: 585 SSMGPGGVTRDTATLEIRGIHPTHYGRICPVETPEGKNTGLVNSLTNYSRVNSLGILESP 644 Query: 591 YRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 + +V G+V + YLSA +E + A+ + + + R + + R+ Sbjct: 645 FYRVYKGMVQKNLGLFYLSAEQEEKTKLGAADLFVSSIDFLENNNIPVRIGEKFTKIHRN 704 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 V+Y+ VS Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E Sbjct: 705 LVEYVGVSPTQMISIATSLIPFLEHDDANRALMGSNMQRQAVPVIRPERPIVGTGLESRA 764 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKV 736 DSG ++ GV+ YV + +I+++ Sbjct: 765 VSDSGHVIQSRFSGVITYVSSDKIIVRT 792 >UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742EB4 Length = 487 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 215/484 (44%), Positives = 316/484 (65%), Gaps = 5/484 (1%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L+ E + E + + + +++ I + G V +D +DE Sbjct: 5 LKAVDFFHTNEEIMNEFFELKEVELSEFYSKYKDTELEEIL--RSRLEGSFVREDVLDEE 62 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 TGE + A + + ++ K+ + +++ D I+ L D T + A++E Sbjct: 63 TGEFVAEAEEIIDIPVIQKIIDAKVEKLSIWEVKPEDR--IIANALVHDSTKNSDEAVIE 120 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 ++R +RPG+ T ++A SL + +FF+ RYDL+ VGR K N+ L + +L+K+D+ Sbjct: 121 VFRKLRPGDLVTVDSARSLVKQMFFNPQRYDLADVGRYKVNKRLKLDVPADVIVLTKEDV 180 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 + ++ + ++ +G+G DDID+L NRR+R VGE+ Q + G++++ + V+E++++ D+ Sbjct: 181 LQTIEYVKNLVSGEGFTDDIDNLSNRRVRGVGELLSIQIKGGMLKMSKMVREKMTIQDIT 240 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 TL PQ ++N KP++A + EFFGS QLSQFMDQ+NPLSE+THKRRISALGPGGL+R+RAGF Sbjct: 241 TLTPQSLLNTKPLNALILEFFGSGQLSQFMDQSNPLSELTHKRRISALGPGGLSRDRAGF 300 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT-DEIH 604 EVRDVH +HYGR+CPIETPEGPNIGLI SLS Y + N+YGF+ETP+ K+ DG ++I Sbjct: 301 EVRDVHNSHYGRICPIETPEGPNIGLIASLSTYGKVNKYGFIETPFVKINDGKADFNDIR 360 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 YL+A EE IAQA++ +D++G+F+ D V CR E + +VD +DVS +Q+VSV Sbjct: 361 YLAADEEEGLFIAQADTPIDKDGNFLTDEVVCRYGDEIVHIDKSKVDILDVSPKQLVSVS 420 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 A LIPFLEHDDANRALMG+NMQRQAVP L+ + P VGTG+ER VAVDSG +K G V Sbjct: 421 AGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPYVGTGLERKVAVDSGAVITSKASGTV 480 Query: 725 QYVD 728 + Sbjct: 481 PLLH 484 >UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO2_MIMIV Length = 1196 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 193/1242 (15%), Positives = 380/1242 (30%), Gaps = 213/1242 (17%) Query: 154 GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR----KLPATII 209 + + D + S Y A + +D + + + + K+P ++ Sbjct: 93 NLLYPLDAIRKQISYSAKYTATVT-QWQDIVDIDTKKTETRIIGSPEKDVPIAKIPIMVL 151 Query: 210 LRALNYTTEQILD---LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + N T + ++ + I + ++ L E + I V+ ++ Sbjct: 152 SKYCNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESM--------IPRKPVVFTQRD 203 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 + ++R + +P G + +I + + + + Sbjct: 204 QNSLLYYVR--------VQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIR 255 Query: 327 QSGHKRIETLFTNDLD--------HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 G + E + + LD + I P+ + AL + ++ + T Sbjct: 256 ALGIETDEDIVDSILDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFTD 315 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSL-LREEIEGSGILSKDDIIDVMKKLIDIRN 437 E E RY + + + E I I ++ KL+ Sbjct: 316 TNPEVKAEQR----RRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYL 371 Query: 438 -------GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 DD D + N+RI G + F+ ++ + ++D P Sbjct: 372 RGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPP 431 Query: 491 DMI---NAKPISAAVKEFFGSSQ--------LSQFMDQNNPLSEITHKRRISALGPGGLT 539 ++I I +++ + LSQ +++ N L +++ RR+ + P Sbjct: 432 NIIPHIKPNSIEQGLRQALSTGNFGSQSRKGLSQMLNRMNHLHSLSYMRRV--ITPTVDA 489 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEG-PNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 R +H T YG +CP+E+PEG P GL+ ++++ + P + Sbjct: 490 STMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINMNSQIPIIESYLIG 549 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 + + YV N N DL R +GE S ++Y Sbjct: 550 KITTLESANKKRLHQYVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGLVLNY-K 608 Query: 655 VSTQQVVSVGASLI-PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 + + + G LI P+L D N + + + + + + + E VD Sbjct: 609 TAEFHIYTDGGRLIRPYLTVTDNK-----LNFKPEMLDEVNSWEEFLAKFPEVIEYVDKE 663 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ---NTCINQMPC 770 QY+ + ++ L K R+N+ N + Sbjct: 664 EEQNIMLAVFPQYIQDANRIMSKKPINSRDQ--------LNKINRTNRYDDNVYVRYTH- 714 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 + + G + ++ P D + G YN + + Sbjct: 715 CEIHPCMILGLISSNIPFPDHNQSPRGI---------FQYNQ--------ARQAMGLYIS 757 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + + +T+ + E+ IV I + Sbjct: 758 DYRERTDISYILYHPQIPLVTSRASKYTGTHIFPAGENSIVAIASY-------------- 803 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + ++ S V + S + + + + + Sbjct: 804 ------------TGLMNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMK 851 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 + L ++++ V+ G V ++ P R ++EKQ + Sbjct: 852 PDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNPKPTAR-------EDEKQYK 904 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 + + ++ I+K+ + +R GDK + R Sbjct: 905 DASSIYKSLIPGAVDKVIT-----------EVNNDGYPIIKMRIRSERIPNVGDKFSSRA 953 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 G KG I DM + ++G DI++NP +P RM IG I Sbjct: 954 GQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIG---------------QLIEC 998 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 +L + V KG+ F Sbjct: 999 LLGKLCAV---------------------------------------KGVYGDATPFTSV 1019 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 I + L G +Y+G G++ + +G Y +L +V DK H+R+ G Sbjct: 1020 DLNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGP 1079 Query: 1251 YSLVTQQPLGGKAQFGGQRFG-EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK------ 1303 L+T+Q G+++ GG R G EME AL A+G A L+E SD Sbjct: 1080 TQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQF 1139 Query: 1304 ----------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 + + +P +F +LL+E+ S+ I Sbjct: 1140 AHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQELASINI 1181 Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 107/315 (33%), Gaps = 56/315 (17%) Query: 27 LLSIQLDSFQKFIEQDPEGQ-YGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQE- 84 L+ +DSF +FIE+ G + ++ L + + P + +E Sbjct: 35 LVKHHIDSFNQFIEEIIPNILQGGDNVISE-KATENKIIRYRLTFNDLGIKPPTLENEEN 93 Query: 85 ------CQIRGVTYSAPLRVKLR----LVIYEREAPEGTVKDIKEQEVYMGEIPLMT--- 131 + ++YSA + +V + + E + E++V + +IP+M Sbjct: 94 LLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPEKDVPIAKIPIMVLSK 153 Query: 132 ------------------DNGTFVINGTERVIV---SQLHRSPGVFFDSDKGKTHSSGKV 170 G F++NG+E+V++ S + R P VF D+ Sbjct: 154 YCNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESMIPRKPVVFTQRDQNSL------ 207 Query: 171 LYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILD 222 LY R+ S + +++ + I +++ +RAL T E I+D Sbjct: 208 LYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIRALGIETDEDIVD 267 Query: 223 LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV 282 + ++ K + L+ + + + + T + Sbjct: 268 SILD-----VKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFTDTNPEVKA 322 Query: 283 KLIEVPVEYIAGKVV 297 + ++ I + V Sbjct: 323 EQRRRYLDKIMTQFV 337 >UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AT93_BABBO Length = 1283 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 159/1041 (15%), Positives = 326/1041 (31%), Gaps = 194/1041 (18%) Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 G +L + + + ++ + KKLI + G+ + ++ D + + Sbjct: 330 YEECGAYFLRHYVLLQAKTNAE--KFETLLYMFKKLIKVSRGEIQTENYDSFAFQELLLP 387 Query: 457 GEMAENQFRVGL---------------VRVERAVKERLSLGDLDTLMPQDMIN------- 494 G++ + L + + + + + L+ D+ + Sbjct: 388 GQIYSCILKESLYVALLKIRSIYHAELLELCKNISGDATRHSKRRLIDVDLQSHEQKELL 447 Query: 495 -----------------AKPISAAVKEFFGSSQ-------------LSQFMDQNNPLSEI 524 A I + F + L+ ++ N + Sbjct: 448 EKLLEKPELFSYAVEKVASDIPKKLHSFLATGNATNMHFELTQSSGLTVVAERINYHRFM 507 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 +H R +L G L + EVR + +G +CP+ TP+G GL+ L+ YA Sbjct: 508 SHFR---SLHRGSLFAKMRSTEVRKLLGETWGFICPVHTPDGAPCGLLLHLAQYAVPVTA 564 Query: 585 GFLETPYRKVT--------------DGVVTDEIHYLSAIEEGNYVIAQA----NSNLDEE 626 E V VTD + + + + +VI ++E Sbjct: 565 TDCEGAAEAVKSLLRTHGYSVDFTGHETVTDFVTHDAQHIKRIHVIVDGVPMCTLPINEA 624 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 +++ + G+ L ++ V++ V S+ ++ Sbjct: 625 PKLYDEIKLAKRYGKFGLKEHYEI----VASPDVKGEYTSI------------MILTYPG 668 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 R P + + +G + + + + + ++ E Sbjct: 669 RVIRPVIC-----LTSGEIEWIGPITQLWSTI--------AVSEEEARISHQMVASNAEG 715 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPV-ERGDVLADGPSTDLGELALGQNMRVAFM 805 ++ + + ++ P + + V + D + PS L + A Sbjct: 716 KCKTLSIDEALMHDNSSDHAVSPVKKVIDNVPVKYDYMEVSPSAILS-------VTAALT 768 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 P++ +N + +++++ H ++ + +L Sbjct: 769 PFSNHNQSPRNMYQCQMLKQSMGVPYHCEQFRSDVKAYRL-------------------- 808 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 + LV T + + A+ A D Sbjct: 809 -----------LFPQKPLVT-TTEFRQMNYEDYPTGMNAVVAVIAHTGFD-------MED 849 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 +I+ R ++ + + ++ L S+I A L G+ Sbjct: 850 AMIINKSSLDRGAFHGCIYKSKVIDAMPANGRSRGNQHYFANTNHLGSKIIASLDKDGLP 909 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQ-LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + ++ ++ + E+Y + ++ + + Sbjct: 910 NVGARVKKGTPICRIESHEKVGGSKQISDRVEKYHDEDAIVDQVTIIGCNDASVAEMPNA 969 Query: 1045 GVLK--IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 +K + + R GDK A RHG KG++S P E+MP+ E+G DI+ NP G Sbjct: 970 SNIKGTRATIKFRIVRNPIVGDKFASRHGQKGILSMAWPAENMPFLESGIIPDIIFNPHG 1029 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA--KLREFIQRAYDLGADVRQKVD 1160 +PSRM IG+++E G +A G +A ++ ++I G + R Sbjct: 1030 LPSRMTIGKLIECMAGKSAAIHGAFQDATCFRKYPKQMATGNKWIDHGGLKGWEERGFRY 1089 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 +S + + + L G +Y G G + Sbjct: 1090 MSKEEELSKT-----------------EDDVIDYFGKTLLQAGYDYYGTESMYCGSLGTE 1132 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + +G ++ +L H+V DK R+TG +T+QP+ G+ GG RFGEME +L A Sbjct: 1133 IRTHIFIGCIFYQRLRHMVSDKAQVRATGPVDAITKQPVKGRKNRGGIRFGEMERDSLIA 1192 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG---------------------M 1319 +GA+ LQ+ L SD + G + Sbjct: 1193 HGASALLQDRLIHCSDAHTAYVCPNCGSIISATVTSVGATNKRSVSHCRICKVACKLVTI 1252 Query: 1320 PESFNVLLKEIRSLGINIELE 1340 P + E+ S+ + I L Sbjct: 1253 PYVLRYVAHELASINVGIRLH 1273 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 151/1111 (13%), Positives = 314/1111 (28%), Gaps = 230/1111 (20%) Query: 28 LSIQLDSFQKFIEQDPEGQYG-------------LEAAFRSVFP-----------IQSYS 63 + +DSF FI+ L+ S I + Sbjct: 11 IHAHIDSFNAFIDHYSTRMVRRIPPVYISADSDHLKHLLNSKEKPHCKLTAVYHNITNLD 70 Query: 64 GNSELQYVSYRLGEPVFD------------VQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 + +S R+G P + +I TY + L VK L I Sbjct: 71 VQVSV--LSLRIGNPTRPGSECLGSDNRMFPRHAKIAHTTYESSLIVKFGLKI------- 121 Query: 112 GTVKDIKEQEVYMGEIPLMT------------------------DNGTFVINGTERVIVS 147 + +E+ +G IP+M G FV+ G ER++ Sbjct: 122 PGTSKVLTKELTVGYIPIMVKSKRCNLDGISPEEMVEQGEDIDEPGGYFVVRGNERIVRQ 181 Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR------ 201 + + + K + + VL+ I R D + L++ +++R Sbjct: 182 LIVLRSN-YPLAIKSGNNRTKHVLFTDYSIMMRSQCHDDGCSVNNVLYLTVNKRCMFRTI 240 Query: 202 -----RKLPATIILRALN--YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + +P ++LRA + E++ + + + + + E D Sbjct: 241 VKGSVQLIPFGVLLRATMPLMSDEELKQKLLQDTLGDEALTVYYQRFFLDLVEREPDICD 300 Query: 255 IE-ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 I+ + G ++ + L E ++ V+ + + E + Sbjct: 301 IDLKENRHLYRLGSACWSQVNQYL-HPGATYEECGAYFLRHYVLLQAKTNAEKFETLLYM 359 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 KL + I+T + + +IY + Sbjct: 360 --------FKKLIKVSRGEIQTENYDSFAFQELLLP--------------GQIYSCILKE 397 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 + E ++S R L+ +++ + + +L Sbjct: 398 SLYVALLKIRSIYHAELLELCKNISGDATRHSKRRLIDVDLQSHEQKELLEKLLEKPELF 457 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 K D + + + L+ G+ T M ++ Sbjct: 458 SYAVEKVASD---------------------------IPKKLHSFLATGNA-TNMHFELT 489 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 + ++ + +FM L + ++ + L E GF + P Sbjct: 490 QSSGLTVVAERI----NYHRFMSHFRSLHRGSLFAKMRSTEVRKLLGETWGF----ICPV 541 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT--------------DGVV 599 H TP+G GL+ L+ YA E V V Sbjct: 542 H--------TPDGAPCGLLLHLAQYAVPVTATDCEGAAEAVKSLLRTHGYSVDFTGHETV 593 Query: 600 TDEIHYLSAIEEGNYVIAQA----NSNLDEEGHFVEDLVTCRSKGESS------LFSRDQ 649 TD + + + + +VI ++E +++ + G+ + + Sbjct: 594 TDFVTHDAQHIKRIHVIVDGVPMCTLPINEAPKLYDEIKLAKRYGKFGLKEHYEIVASPD 653 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK-----PLVGTGM 704 V S + G + P + +G Q + + ++ +V + Sbjct: 654 VKGEYTSIMILTYPGRVIRPVICLTSGEIEWIGPITQLWSTIAVSEEEARISHQMVASNA 713 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDA-----SRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 E S A+ V + +K + E+ P LT ++ Sbjct: 714 EGKCKTLSIDEALMHDNSSDHAVSPVKKVIDNVPVKYDYMEVSPSAILSVTAALTPFSNH 773 Query: 760 NQ---NTCINQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQ 798 NQ N QM S+G P +D + + + G Sbjct: 774 NQSPRNMYQCQMLKQSMGVPYHCEQFRSDVKAYRLLFPQKPLVTTTEFRQMNYEDYPTGM 833 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV---SRDTKLGPEEITADIP 855 N VA + G++ ED++++++ + F + + G + A+ Sbjct: 834 NAVVAVIAHTGFDMEDAMIINKSSLDRGAFHGCIYKSKVIDAMPANGRSRGNQHYFANTN 893 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 ++G ++ LD+ G+ +GA V G + R EK K Sbjct: 894 HLGSKIIASLDKDGLPNVGARVKKGTPIC------------------RIESHEKVGGSKQ 935 Query: 916 SSLRV--PNGVSGTVIDVQVFTRDGVEKDKRALE-IEEMQLKQAKKDLSEELQILEAGLF 972 S RV + V V + + + + K + + + Sbjct: 936 ISDRVEKYHDEDAIVDQVTIIGCNDASVAEMPNASNIKGTRATIKFRIVRNPIVGDKFAS 995 Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + +++ AE + L ++ Sbjct: 996 RHGQKGILSMAWPAENMPFLESGIIPDIIFN 1026 >UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain (Partial sequence n terminus) protein (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5RWZ2_RALSO Length = 587 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 253/439 (57%), Positives = 329/439 (74%), Gaps = 6/439 (1%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR V VP+LL+ Q+ S+ +F+++ GL+AAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + +++VSY L P FDV+ECQ RG+T+ + LR K+RL+I +RE P VK+ Sbjct: 61 FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPTK-VKE 119 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKEQEVYMGEIPLMT G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 120 IKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 179 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDF+FDPKD L+ R+DRRRK+P TI+L+++ T EQIL FF F ++ + Sbjct: 180 IPYRGSWLDFQFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDG 239 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ME VPERLRGE A FDI + NGKV +EK +RI A+HIR L+ KLI VP +Y+ G+ Sbjct: 240 ALMEFVPERLRGEVARFDISDKNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDYLLGR 299 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 V+AK+ +D TGE++ AN EL+ +L KL +G K I+TL+TNDLD GPY+S+TLR D Sbjct: 300 VLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTLRTDD 359 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T D+ +A + IYRMMRPGEPPT +A E+LF+ LF++ED YDLS VGRMK N L R E Sbjct: 360 TVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLNRSEGT 419 Query: 416 GSGILSKDDIIDVMKKLID 434 G +L+ DDI+D +K L++ Sbjct: 420 GPMVLTDDDILDTIKLLVN 438 >UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=Archaea RepID=RPOB_SULAC Length = 1126 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 168/956 (17%), Positives = 328/956 (34%), Gaps = 137/956 (14%) Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE-TASFDIEANG 259 R P LR L Y++ L + + E ++ + +P L+ + ++ + Sbjct: 76 REITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPIDK 135 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE-----LICAAN 314 + + + + + + + + + E +A V DY + + +A Sbjct: 136 LIEIGEDPKDPGGYF---IVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAA 192 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV---EIYRMMR 371 ++ +L S +I I L D + A+ +I + Sbjct: 193 GYRVQVMIERLKDSTI-QISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELL 251 Query: 372 PG-----EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EIEGSGILSKD 423 P + E A N + + + Sbjct: 252 PSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGY 311 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + K++++ G+ E DD DH N+R+R G++ + FRV + + +L Sbjct: 312 YLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSK 371 Query: 484 LD--TLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALG 534 + L ++ A I+ ++ + SQ +D+ N LS ++H RR+ + Sbjct: 372 VRGRRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVVS-- 429 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 L R + FE RD+H T +GR+CP ETPEGPN GL+ +L++ AQ + G E+ +V Sbjct: 430 --SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSV-GINESVVERV 486 Query: 595 TDGVVT----DEIHYLSAIEEGN---------YVIAQANSNLDEEGHFVEDLVTCRSKGE 641 + D I +S E Y+ + ++ + + R +G+ Sbjct: 487 AYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGK 546 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK--PL 699 D+V+ ++T + N + + R P + + PL Sbjct: 547 L----SDEVNVAYIATDYL----------------NEVHINCDAGRVRRPLIIVNNGTPL 586 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASR---IVIKVNEDEMYPGEAGIDI------ 750 V T + + + G ++++DA + +N ++ P ++I Sbjct: 587 VDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSAIL 646 Query: 751 ------YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS---------------- 788 ++ +S +NT + M SLG + D + Sbjct: 647 GIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRML 706 Query: 789 --TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 + G N +A M + GYN EDSI++++ ++ + + + + G Sbjct: 707 GVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGG 766 Query: 847 PEEITADIPN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 E+ P G+ L+++G+V EV GGD+L+GKV+P Q E Sbjct: 767 QED-KIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKEL- 824 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 +D+S+ +G +G V V + K + Sbjct: 825 -------SPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKV--------------R 863 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 +L+I E G + GV +D++ + + D + Sbjct: 864 VRDLRIPEIG--DKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQ 921 Query: 1021 LKHEFEKKLEAKRRKITQGDDL--APGVLKIVKVYLAVKRRIQPGD-KMAGRHGNK 1073 + K A K P + ++ K L + + GR G K Sbjct: 922 IMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQK 977 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 173/460 (37%), Gaps = 86/460 (18%) Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR----ALEIEEMQLKQ 955 + AI +++DS + + + + F E+ K +I + Sbjct: 719 NAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKIVTPEAGV 778 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 + ++LE + G V K+ + + ++ K + + Sbjct: 779 KGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAK--RDTSIV 836 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 ++ E + K+VKV + R + GDK A RHG KGV Sbjct: 837 TRHGENGIVDLVLI-----------TETLEGNKLVKVRVRDLRIPEIGDKFATRHGQKGV 885 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 + + DMPY G DI+LNP +PSRM IGQI+E IG K A+ + Sbjct: 886 VGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEA--------IGGKYAALSGKP 937 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + ATP + K E+ Sbjct: 938 VD---------------------------------------------ATPFLETPKLQEM 952 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 ++ + +YDGRTG++ + + G +Y KL+H+V DKMHAR+ G ++T Sbjct: 953 QKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILT 1012 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-------DVNGRTKMYKNI 1308 +QP G+A+ GG RFGEME L +G A +++ L SD D G Y Sbjct: 1013 RQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRS 1072 Query: 1309 VDGNHQM---------EPGMPESFNVLLKEIRSLGINIEL 1339 + + +F +L++E+ S+ I+ L Sbjct: 1073 KNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRL 1112 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 103/304 (33%), Gaps = 56/304 (18%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + L+ LDSF F+ L+ I + +++ R Sbjct: 8 WAIAESFFKTRGLVRQHLDSFNDFLRNK------LQQVIYEQGEIVTEVPGLKIKLGKIR 61 Query: 75 LGEPVF-----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +P E ++R +TYS+P+ L ++ E + E+Y Sbjct: 62 YEKPSIRETDKGPMREITPMEARLRNLTYSSPIF--LSMIPVENNIEGEPI------EIY 113 Query: 124 MGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDS 159 +G++P+M G F++NG+E+VI++Q + Sbjct: 114 IGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLV- 172 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR---KLPATIILRALNYT 216 D GK+ S+ + G + + + ++I ++P II+RAL + Sbjct: 173 DYGKSGSNITHVAKVTS-SAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFV 231 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 T++ D+ + + N+L L +V + + R + Q Sbjct: 232 TDR--DIVYAVSLDPQIQNELLPSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQ 289 Query: 277 LEKD 280 + Sbjct: 290 VIDK 293 >UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=Firmicutes RepID=D0V9L6_9BACI Length = 481 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 181/529 (34%), Positives = 280/529 (52%), Gaps = 68/529 (12%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 10 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V+E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 64 LEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F GK +GK + A +IP RG+WL++E Sbjct: 117 PIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGFTATVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKV--------IFEIRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL + + ++ILDL E +K Sbjct: 174 TDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKAL 233 Query: 239 MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 +E+ GE + + + + + R A R + + + Sbjct: 234 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKL----HIKNRLFNQR 289 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ +D TGE++ L L K L++G + Sbjct: 290 LAETLVDPETGEILAEKGQILDRRTLDK------------VLPYLENGIGFRKLYPNGGV 337 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 +++ ++ P + + N E Sbjct: 338 V-EDEVMLQSIKIYAPTDAEGEQT------------------------INVIGNAYIEEA 372 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ DII + ++ +G G+ DDIDHLGNRR+RSV E+ +NQFR+GL R+ER V+ Sbjct: 373 IKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVCELLQNQFRIGLSRMERVVR 432 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 433 ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 481 >UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4530 Tax=cellular organisms RepID=RPB2_YEAST Length = 1224 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 167/1079 (15%), Positives = 329/1079 (30%), Gaps = 191/1079 (17%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY------GLEAAFRSVFPIQSYSGNSE 67 + L+S QLDSF +F++ + LE + + S E Sbjct: 30 SWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYE 89 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + + V +G + QE + + Sbjct: 90 ISFG-----------------------KIYV----TKPMVNESDGVTHALYPQEARLRNL 122 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 T + ++ +R + PG + S I L Sbjct: 123 ---TYSSGLFVDVKKRTYEAIDV--PGRELKYELIAEESEDDSESGKVFI----GRLPIM 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 K+ + A ++ + F+ + I + ++ + ER Sbjct: 174 LRSKNCY--------------LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSA 219 Query: 248 GETASFDIEANGKVY--VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 G +A V + R + R + VKL YI + Sbjct: 220 GNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQD 279 Query: 306 TGELIC--AANMELSLDLLAKL-SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 +I A + ++L + ++ + ++ G I DR +A Sbjct: 280 IPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVI---------QDRETA 330 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L I R E + + L + ++ EG Sbjct: 331 LDFIGRR----GTALGIKKEKRIQYAKDILQKEFLPHITQL-----------EGFESRKA 375 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + ++ +L+ + + DD DH G +R+ G + F+ ++ + + + Sbjct: 376 FFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRT 435 Query: 483 DLD--TLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHK 527 + + INAK I++ +K + SQ +++ S ++H Sbjct: 436 VEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 495 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR + + R+ + R +H TH+G VCP ETPEG GL+ +LS+ + + G Sbjct: 496 RRTNT----PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISV-GTD 550 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN----SNLDEEGHFVEDLVTCRSKGESS 643 P + + + + N +E L T R KG+ + Sbjct: 551 PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN 610 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + + ++ + + L + + +L + + + + Sbjct: 611 -PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESL-----GHKELKVRKGHIAKLMAT 664 Query: 704 MERAV-----AVDSGVTAVAKRGGVVQYVDASRIV------------------------- 733 + + V+ + G+V+Y+DA Sbjct: 665 EYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVD 724 Query: 734 -----------IKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 E++P I + +S +NT + M ++G + Sbjct: 725 PAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 784 Query: 780 GDVLADGPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 +V D + EL GQN VA ++GYN EDS+++++ Sbjct: 785 YNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQS 844 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN------VGEAALSKLDESGIVYIGA 875 + F ++ + + + E T + P + KLD+ G++ G Sbjct: 845 SIDRGLFRSLFFRSYMDQEKKYGMSITE-TFEKPQRTNTLRMKHGTYDKLDDDGLIAPGV 903 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 V+G D+++GK TP + EE R + +D+S + + +G V V V T Sbjct: 904 RVSGEDVIIGKTTPISPDE---EELGQRTAYHS----KRDASTPLRSTENGIVDQVLVTT 956 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 K + + K S Q G+ R + L P Sbjct: 957 NQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPH 1015 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 92/471 (19%), Positives = 168/471 (35%), Gaps = 89/471 (18%) Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 +L + + AI + +D S+ + + +F R ++++K+ Sbjct: 816 ELPAGQNAIVAIACYSGYNQED-SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETF 874 Query: 954 KQAKKDLSEELQI-----LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 ++ ++ + ++ L+ + V K + D +EE Sbjct: 875 EKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPD--------EEELG 926 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + +++ + + +T D LK VKV + + Q GDK A Sbjct: 927 QRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD----GLKFVKVRVRTTKIPQIGDKFAS 982 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KG I EDMP+ G D+++N H + + I Sbjct: 983 RHGQKGTIGITYRREDMPFTAEGIVPDLIIN---------------PHAIPSRMTVAHLI 1027 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 +L + G F Sbjct: 1028 ECLLSKVA---------------------------------------ALSGNEGDASPFT 1048 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 I +LL+ + G +Y+G TG++ + G Y +L H+VDDK+HAR+ Sbjct: 1049 DITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARAR 1108 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM 1304 G ++T+QP+ G+++ GG RFGEME + A+GAA L+E L SD + G + Sbjct: 1109 GPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGL 1168 Query: 1305 -------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K + + +P + +L +E+ ++ I L + Sbjct: 1169 MTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTD 1219 >UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=128 Tax=Eukaryota RepID=RPB2_HUMAN Length = 1174 Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 110/663 (16%), Positives = 226/663 (34%), Gaps = 69/663 (10%) Query: 397 LSAVGRMKFNRSLLREE-------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 ++ R+K+ + +L++E + + ++ +L+ G+ E+DD DH G Sbjct: 330 VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYG 389 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAKPISAAVKEFFG 507 N+R+ G + FR + + V+ + + I + IS +K Sbjct: 390 NKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLA 449 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR+++ + R+ + R +H T Sbjct: 450 TGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS----PIGRDGKLAKPRQLHNTL 505 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G VCP ETPEG +GL+ +L++ A + G +P + + + + +S + Sbjct: 506 WGMVCPAETPEGHAVGLVKNLALMAYISV-GSQPSPILEFLEEWSMENLEEISPAAIADA 564 Query: 615 VIAQANS----NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 N + + L R + + + + + ++ + + Sbjct: 565 TKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRP 624 Query: 671 LEHDDANRALMG---ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 L + + L+ + ++ + + LV +G+ + T + Sbjct: 625 LLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQE 684 Query: 728 DASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 E++P I + +S +NT + M ++G + V Sbjct: 685 KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRM 744 Query: 785 DGPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 D + EL G N VA + GYN EDS++++ V Sbjct: 745 DTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRG 804 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIP------NVGEAALSKLDESGIVYIGAEVTGG 880 F ++ + EE+ + P + A KLD+ G++ G V+G Sbjct: 805 FFRSVFYRSYKEQESKKGFDQEEV-FEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGD 863 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 D+++GK E + E + +D S + +G V V V Sbjct: 864 DVIIGKTVTLPENEDELEST-------NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 K + + K S Q G+ R + + P + Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976 Query: 1001 GLT 1003 + Sbjct: 977 TIG 979 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 159/460 (34%), Gaps = 71/460 (15%) Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK--DKRALEIEEMQLKQ 955 E R + S V +S N +++ R + E E + Sbjct: 765 EYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFD 824 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 ++ + + G+ I L G+ A + D + +T E +++LE Sbjct: 825 QEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 +Y + + L K K+ + R Q GDK A RHG KG Sbjct: 885 RRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 944 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 EDMP+ G DI++NP +PSRM I G I + + Sbjct: 945 CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTI---------------GHLIECLQGKV 989 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + + ATP D +I Sbjct: 990 SAN--------------------------------------KGEIGDATPFNDAVNVQKI 1011 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 LL G LY+G TG + + +G Y +L H+VDDK+H+R+ G ++ Sbjct: 1012 SNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILN 1071 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK------------ 1303 +QP+ G+++ GG RFGEME A+GAA L+E L SD Sbjct: 1072 RQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTR 1131 Query: 1304 ----MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + MP + +L +E+ S+ I + Sbjct: 1132 THTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171 >UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota RepID=C4Q1D7_SCHMA Length = 1304 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 170/1040 (16%), Positives = 326/1040 (31%), Gaps = 145/1040 (13%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 D L+ QLDSF +FI+ S+ I S ELQ Sbjct: 156 ISSYFDEKGLVRQQLDSFDEFIQ-------------TSIQKIVEDSPIIELQ-------- 194 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM----GEIPLMTDN 133 E Q G P V+ RL + + T + V M + +T Sbjct: 195 -----AEAQHSGGILETP--VQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYA 247 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 ++ +++I ++ + ++ R E Sbjct: 248 APLYVDVMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPG 307 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 + I+ K I + T + +K +++ L T Sbjct: 308 GYFIINGSEK--VLIAQEKMATNTVYVFK---QKDSKYAYKTEIRSCLEHSSRPASTLWI 362 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 ++ A G K I R + L ++ + V G V +D ++ Sbjct: 363 NMMARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILE---------- 412 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM-MRP 372 + + + LD I E + AL I RP Sbjct: 413 ---------HIIYDFDDTEMREMIKPSLDDAFVIQE---------QKVALNFIGSRGARP 454 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 G T+E + + E L VG + + ++ +L Sbjct: 455 G--VTKEKRIKYAKEILQKET---LPHVG-----------VSDFCETRKAYFLGYMVHRL 498 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGDLDTLMPQ 490 + + +VDD DH GN+R+ G + FR + + ++ + + + Sbjct: 499 LLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLE 558 Query: 491 DMINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGG 537 I ++ I+ +K + SQ +++ S ++H RR+++ Sbjct: 559 LAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNS----P 614 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 + R+ R +H T +G +CP ETPEG +GL+ +L++ A + G +P + + Sbjct: 615 IGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISV-GSQPSPILEFLEE 673 Query: 598 VVTDEIHYLSAIEEGNYVIAQANS----NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 + + ++ G N H + L R + + + + Sbjct: 674 WSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKLRRQVDVIVSEVSMIRDY 733 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMG---ANMQRQAVPTLRADKPLVGTGMERAVAV 710 ++ + + L + + L+ + + + + LV +G+ + Sbjct: 734 RDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDT 793 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG---EAGIDIYNLTKYTRSNQNTCINQ 767 T G + A E++P I + +S +NT + Sbjct: 794 LEEETV-MIAMGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 852 Query: 768 MPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMPWNG 809 M ++G + D + EL G N VA + G Sbjct: 853 MGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTG 912 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN------VGEAALS 863 YN EDS++++E +Q F + + + EE+ + PN + A Sbjct: 913 YNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHGMDLEEV-FEKPNPQNCQGMRHAIYD 971 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 KLD+ G++ G V+G D+L+GK E + E G++ +D+S+ + Sbjct: 972 KLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEG-------GQRRYTKRDASVFMRRS 1024 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 G V V V + K + + K S Q G+ R + Sbjct: 1025 EYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCE 1084 Query: 984 VEAEKLDKLPRDRWLELGLT 1003 + P + + Sbjct: 1085 GITPDIIINPHAIPSRMTIG 1104 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 89/467 (19%), Positives = 163/467 (34%), Gaps = 79/467 (16%) Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 E R + + V ++ N +I+ R + ++ Sbjct: 890 EYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHGMD 949 Query: 958 KD------LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + + Q + ++ ++ + D + + + L ++E + Sbjct: 950 LEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEGGQ 1009 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 + ++ + + + +T ++ K KV + + Q GDK A RHG Sbjct: 1010 RRYTKRDASVFMRRSEYGIVDQVMVTWNNE----GNKFCKVRVRTTKAPQVGDKFASRHG 1065 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 KG EDMP+ G DI++NP +PSRM IG ++ Sbjct: 1066 QKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLI------------------ 1107 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 E + + + ATP D Sbjct: 1108 -----------------------------------ECLQGKVSANKGEIGDATPFNDAVN 1132 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 +I LL+ +G +Y+G TG + + +G Y +L H+VDDK+H+RS G Sbjct: 1133 VRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRSRGPV 1192 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK-------- 1303 ++ +QP+ G+++ GG RFGEME A+GAA L+E L SD Sbjct: 1193 QILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAI 1252 Query: 1304 --------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ + +P + +L +E+ S+ I + Sbjct: 1253 AHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMMIN 1299 >UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeota RepID=B5IGJ5_9EURY Length = 1201 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 153/950 (16%), Positives = 319/950 (33%), Gaps = 131/950 (13%) Query: 204 LPATIILRALNYTTEQI---LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 P + + + I LD + K ++E V E F I + + Sbjct: 143 FPVMVKSKICTLHEDNIDDYLDSISKDKDILNWPYKQKLEYVGEDPDDPGGYFIIGGSER 202 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV-AKDYIDESTGELICAANMEL-- 317 V V R + + + ++E + + A +++ + +I + + Sbjct: 203 VLVSLEDLAPNRVLVEKNERYNTVVETAKVFSQRRGYRALTIMEKKSDGIIVVSVPAVAG 262 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 ++ L+ + G ++ + ++ + L VE ++ P T Sbjct: 263 TIPLVILMKALGLEKDQDIYRAIVSDEKMSVIALANIEE-------VENDKLYPPNGIRT 315 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EIEGSGILSKDDIIDVMKKLID 434 + A E F + + + S L + I + + +++++ Sbjct: 316 QRDAIEYLEKRFAAGQAKEYREKKISQILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLE 375 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-------DLDTL 487 + G + DD DHL N+R++ G++ E FR+ + + +K +L + Sbjct: 376 LHLGLRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLKYQLERTYNRKKGIRIRVS 435 Query: 488 MPQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + QD++ K + A + G + +SQ +D+ + +S ++H RR+ + LTR + F Sbjct: 436 IRQDVLTQKIMHAMSTGNWVGGRTGVSQLLDRTSHMSTLSHLRRVIS----PLTRSQPHF 491 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 E RD+HPT +GR+CP ETPEG N GL+ + ++ +E G+ E K+ G+ +E Y Sbjct: 492 EARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSE-GYPEEDVLKILKGLGVEERQY 550 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD---VSTQQVVS 662 + Y+ + ++ + R KG Q++ + + S Sbjct: 551 ETGELARVYLNGNLVGYHKDGLALTNEIRSRRRKGLI----SHQINIRYDDTTNEVMINS 606 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS---------- 712 + L + + + + LV G+ + + Sbjct: 607 DKGRIRRPLLVVENGNVKYTSRHRELLRRGKMDIEDLVREGVVEWIDAEEEENAYIAVYA 666 Query: 713 -GVTAVAKRGGVVQYVD---------ASRIVIKVNED--------EMYPGEAGIDIYNL- 753 V G V + ++ ++ ++ ++I L Sbjct: 667 YDVPERCPHCGRVLGRNDVEWMNPGEGEKVTLRCKHCGAEFGVEKKITKEHTHLEIDPLL 726 Query: 754 -----------TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS-------------- 788 + S + T M SLG P D Sbjct: 727 ILGAVAGCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRTK 786 Query: 789 ----TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 + GQN VA + ++GYN +D+I++++ V+ + + R Sbjct: 787 TMDFVNFMRRPAGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYP 846 Query: 845 LGPEEITADIPN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 G E+ +IP+ + E LDE G++ V GGD+L+GK +P + E Sbjct: 847 GGQED-KFEIPSPDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEEESE 905 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 ++SS+ + G V V + + + +++++ + Sbjct: 906 LLG--------PQKRRESSVTMRPEEEGWVDSVLLTVSENNS------RLVKVKVRDQRI 951 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 + G + A++ + + +P D Sbjct: 952 PELGDKFASRHGQKGVVGAIIPQEDMPFTESGIIP----------DLIINPHAIPSRMTV 1001 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + K+ + + G + K ++ L G K G Sbjct: 1002 GHILEMIGGKVGSLEGRFVDGTVFSGEPEKALREALVKN-----GFKYNG 1046 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 148/399 (37%), Gaps = 85/399 (21%) Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 + ++L+ + G V K L +++ + + + +E Sbjct: 866 EDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEEESELLGPQKR--RESSVTMRPEE 923 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 +T ++ + ++VKV + +R + GDK A RHG KGV+ I Sbjct: 924 EGWV-------DSVLLTVSENNS----RLVKVKVRDQRIPELGDKFASRHGQKGVVGAII 972 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P EDMP+ E+G D++ + H + +G + Sbjct: 973 PQEDMPFTESGIIPDLI---------------INPHAIPSRMTVGHIL------------ 1005 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 E++ +G + VF G E ++E L Sbjct: 1006 ---------------------------EMIGGKVGSLEGRFVDGTVFSGEPEKALREALV 1038 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 +G+ +YDG TG + E + VG +Y KL+H+V K HARS G ++T+QP Sbjct: 1039 KNGFKYNGKEIMYDGITGRKIEAEIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTE 1098 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----------------- 1303 G+++ GG RFGEME L +GAA +++ L SD Sbjct: 1099 GRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNSDGTVLYVCGNPECGHIAMFDRKRGI 1158 Query: 1304 -MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + +F ++ E+ SLG+ + ++ Sbjct: 1159 LRCPVCGNTTNIYPIETSYAFKLMHDELASLGVIMRMKV 1197 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 52/430 (12%), Positives = 112/430 (26%), Gaps = 99/430 (23%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS--------------GNSELQYVS- 72 ++ + S+ I ++ + + ++ + Sbjct: 14 VNHHIASYNDLIPTPDNPNSVMQEIVDTT-KVTDEDPPGVITLDRTKTGGKTIKIVFGRN 72 Query: 73 ----------YRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 R+G P E ++R ++Y APL +K++++ E + Sbjct: 73 NDYWDVNEPTIRIGRPEIKEATGATVQITPMEARLRDLSYLAPLYLKIKVL----ECDDA 128 Query: 113 TVKDIKEQEVYMGEIPLMT----------------------------------------- 131 + + + V +G+ P+M Sbjct: 129 GCYEREPEMVKIGDFPVMVKSKICTLHEDNIDDYLDSISKDKDILNWPYKQKLEYVGEDP 188 Query: 132 --DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 G F+I G+ERV+VS +P K V+ A++ R + Sbjct: 189 DDPGGYFIIGGSERVLVSLEDLAPNRVLVE---KNERYNTVVETAKVFSQRRGYRALTIM 245 Query: 190 PKDNLFVRIDRRR----KLPATIILRALNYTTE-QILDLFFEKVIFEIRDNKLQMELVPE 244 K + + + +P I+++AL + I + E+ + Sbjct: 246 EKKSDGIIVVSVPAVAGTIPLVILMKALGLEKDQDIYRAIVSDEKMSVIALANIEEVEND 305 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 +L I +R A ++ + + I +D I + Sbjct: 306 KL---YPPNGIRTQRDAIEYLEKRFAAGQAKEYREKKISQILDSSLLPHLGTSKEDRIKK 362 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + L L + L L + E L + L Sbjct: 363 A-----YYLGRMARRVLELHLGLRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLK 417 Query: 365 EIYRMMRPGE 374 + Sbjct: 418 YQLERTYNRK 427 >UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26 Tax=Eukaryota RepID=RPB2_DROME Length = 1176 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 130/818 (15%), Positives = 270/818 (33%), Gaps = 85/818 (10%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDV------KLIEVPVEYIAGKVVAKDYIDE 304 F I + KV + + + T KD + + + + Sbjct: 184 GYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMAR 243 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + + +A + + +L + Q + I E + D + Sbjct: 244 GSQNIKKSAIGQRIIAILPYIKQE-IPIMIVFRALGFVADRDILEHIIYDFDD------P 296 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSED--RYDLSAVGRMKFNRSLLREE-------IE 415 E+ M++P E F R ++ R+K+ + +L++E + Sbjct: 297 EMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSD 356 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + ++ +L+ G+ E+DD DH GN+R+ G + FR + + V Sbjct: 357 FCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEV 416 Query: 476 KERLS--LGDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNP 520 + + + I I+ ++ + SQ +++ Sbjct: 417 RMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTF 476 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 S ++H RR+++ + R+ + R +H T +G +CP ETPEG +GL+ +L++ A Sbjct: 477 ASTLSHLRRVNS----PIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAY 532 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE----DLVTC 636 + G +P + + + + ++ + N E L Sbjct: 533 ISV-GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKL 591 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG---ANMQRQAVPTL 693 R + + + + + ++ + + L + L+ M ++ Sbjct: 592 RRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNN 651 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV-IKVNEDEMYPGEA---GID 749 + + LV +G+ + T + D E++P Sbjct: 652 YSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCAS 711 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------------TDL 791 I + +S +NT + M ++G + V D + Sbjct: 712 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRF 771 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 EL G N VA + + GYN EDS++++ V+ F ++ + ++G +E Sbjct: 772 RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENK-RVGDQEEN 830 Query: 852 ADIPNVGEAA------LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 + P+ G KLD+ GI+ G V+G D+++GK E + R Sbjct: 831 FEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKR-- 888 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 +D+S + N +G V V + K + + K S Q Sbjct: 889 -----FSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 G+ R + A + P + + Sbjct: 944 KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIG 981 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 92/459 (20%), Positives = 163/459 (35%), Gaps = 79/459 (17%) Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK-RALEIEEMQLKQAKK 958 + AI + +DS + ++ + ++ F K + Q + +K Sbjct: 779 NSIVAILCYTGYNQEDSVI-----LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEK 833 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 Q + + ++ + D + + + L D+E + ++ +++ Sbjct: 834 PHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRD 893 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + + +T + K K+ + R Q GDK A RHG KG Sbjct: 894 ASTFLRNSETGIVDQVMLTLNSE----GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 949 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 EDM + G DI++NP +PSRM IG ++ Sbjct: 950 QYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLI------------------------- 984 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 E + + + + ATP D +I Sbjct: 985 ----------------------------ECLQGKLGSNKGEIGDATPFNDAVNVQKISTF 1016 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L+ G +Y+G TG + V +G Y +L H+VDDK+H+R+ G ++ +QP Sbjct: 1017 LQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQP 1076 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------------- 1303 + G+A+ GG RFGEME ++GAA L+E L SD Sbjct: 1077 MEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNT 1136 Query: 1304 -MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 K + + +P + +L +E+ S+ I L Sbjct: 1137 FECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 121/747 (16%), Positives = 246/747 (32%), Gaps = 116/747 (15%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPE------GQYGLEAAFRSVFPIQSYSGNSELQYV 71 D L+ QLDSF +FI+ + L+A + L++ Sbjct: 31 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFE 90 Query: 72 SYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 L +P E ++R +TYSAPL V + + + + Q+ Sbjct: 91 QIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT---KNVEGLDPVETQHQK 147 Query: 122 VYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPG-VF 156 ++G+IP+M G F+ING+E+V+++Q + V+ Sbjct: 148 TFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 207 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGS---WLDF-----EFDPKDNLFVRID-----RRRK 203 S K ++ + + R + W++ + K + RI +++ Sbjct: 208 VFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQE 267 Query: 204 LPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 +P I+ RAL + IL+ ++ L E + + + G Sbjct: 268 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD-EAFVVQEQNVALNFIGARG 326 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 G R E +++ V D+ + + + LL Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLP--------HVGVSDFCETKKAYFL---GYMVHRLLL 375 Query: 323 AKLSQSGHKRIETLFTNDLDH-GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 A L + + LD GP ++ R N + + + G+ E A Sbjct: 376 ASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELA 435 Query: 382 ESLFENLFFSEDRYDL--SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 N+ RY L G K + L+ + ++++ Sbjct: 436 IKT--NIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 493 Query: 440 GEVDDIDHLGNR--RIRSVGE--------MAENQFRVGLVRVERAVKERLSLGDLDTLMP 489 G++ L N + E + +N + + V L + ++ Sbjct: 494 GKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 553 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS-----ALGPGGLTRERAG 544 + I I A + F + +P + R++ + + R+ Sbjct: 554 LEEIAPSAI-ADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRD 610 Query: 545 FEVRDVHPTHYGRVC-PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 E+R T GR+C P+ E ++ L + + +Y +V + Sbjct: 611 REIRI--YTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYS---WQVLVASGV--V 663 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 Y+ +EE +IA + +L ++ + + + + ++ ++ V Sbjct: 664 EYIDTLEEETVMIAMSPYDLKQDK-------------DYAYCTTY--THCEIHPAMILGV 708 Query: 664 GASLIPFLEHDDANRALMGANMQRQAV 690 AS+IPF +H+ + R + M +QA+ Sbjct: 709 CASIIPFPDHNQSPRNTYQSAMGKQAM 735 >UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_CHLRE Length = 626 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 158/496 (31%), Positives = 245/496 (49%), Gaps = 73/496 (14%) Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V G V GD+L + G +L ++ A + + +D+ L ++ ++ Sbjct: 116 VKEGDWVEVGDLLADSASSIG-GELAIGHNIIVAYMPWEGYNYEDAIL-----INERLVY 169 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVEA 986 ++T +E+ + + ++ +Q +++ + E++ L+ ++I + + G + Sbjct: 170 EDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGIAKIGSWVEEGDILV 229 Query: 987 EKLDK------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 K+ P+ + L + + L + + A+++ Sbjct: 230 GKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVININILARQKIQINTK 289 Query: 1041 DLAPGV-----------------LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 G + +YLA KR++Q GDKMAGRHGNKG++S+I P + Sbjct: 290 SKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGRHGNKGIVSRILPRQ 349 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ +G VDIVLNPLGVPSRMN+GQI E LG+A + +G+ + Sbjct: 350 DMPFLPDGAAVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMY------ 403 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 GAD + LS + + L D Sbjct: 404 --------GADASRSFVLSKLYEARKKTGLK-------------------------WLLD 430 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G+IRL+DGR E F++ VTVG Y+LKL H+VDDKMHARSTG YSLVTQQPL G++ Sbjct: 431 PNHPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVDDKMHARSTGPYSLVTQQPLRGRS 490 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 + GGQR GEMEVWA+E YGAA+ L EMLT+KSDD+ GR ++KN+++ G PESF Sbjct: 491 KQGGQRLGEMEVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLWKNLIENKEIS-LGSPESF 549 Query: 1324 NVLLKEIRSLGINIEL 1339 VL+ E+++L ++I L Sbjct: 550 KVLICELQALCLDIGL 565 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 150/285 (52%), Gaps = 12/285 (4%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ P V G+ VE GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 96 YNLETYHRSNQDTCLIHKPAVKEGDWVEVGDLLADSASSIGGELAIGHNIIVAYMPWEGY 155 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T+IHI+ +++TKLG E+IT +IP++ E + LD++GI Sbjct: 156 NYEDAILINERLVYEDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGI 215 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGK+TP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 216 AKIGSWVEEGDILVGKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVIN 275 Query: 931 VQVF------------TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 + + K RA + + + Q + + + ++ Sbjct: 276 INILARQKIQINTKSKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGR 335 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 G+ + L + + D ++ Sbjct: 336 HGNKGIVSRILPRQDMPFLPDGAAVDIVLNPLGVPSRMNVGQIYE 380 >UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4MYU5_THEPA Length = 1244 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 164/1120 (14%), Positives = 361/1120 (32%), Gaps = 191/1120 (17%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG--QYGLEAAFRSVFPIQSY 62 Y K I+ + P + + + ++S+ F+ + + R Sbjct: 25 YEPVKEIKDKWKILPCYMGMRGIARQHINSYNNFVLHEIKDIINAPSNKVLR-----TDL 79 Query: 63 SGNSELQYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 + L++V ++G+P Q C+IR TYSAP+ V + Sbjct: 80 YPSLSLEFVDIKIGKPFFTDHSKHVFKLTPQLCRIRDFTYSAPILVTIDY--------FR 131 Query: 113 TVKDIKEQEVYMGEIPLMTDNG-TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +++ + +G IP+M + F+ + +E + H S G+ + K+ + Sbjct: 132 DYTFTRKENLEIGRIPVMLRSCICFLSSDSE---SNSDHDSSGLPEYNSSKKSMKNNFD- 187 Query: 172 YNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE 231 IP + E + F++ + + Sbjct: 188 -----IPD----------------------------------GLSKEDR-ESFYKSYMLD 207 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPV 289 + + + + + ++ VE + A + + V Sbjct: 208 ECPYDPGGYFIIKGVEKVILMQEQLSKSRIIVEMDVKKNICATVTSATAESKSRTAVVYK 267 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK-------RIETLFTNDLD 342 + D ++ A +E +++ +S S + + Sbjct: 268 NSQLYLRINSFTDDVPLCIVLKAMGIETDHEIIQLISNSPTTFKNSNNLTTPSSNLPNGL 327 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRP----GEPPTREAAESLFENLFFSEDRYDLS 398 L + N RL AL+ I + +RP + + ED +D+ Sbjct: 328 DYITFLNDLYNEDINSRLDALMYIGKKIRPRVLGKGFFSSNKDRAPKSKQMILEDTHDI- 386 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 + R+ + +++ + SG + + + +++++ N +DD DH GN+R+ G+ Sbjct: 387 -LSRVLLSHIPMKDCRDFSGKIKTLSL--MAHRVLNVVNNVEPLDDKDHYGNKRLELAGQ 443 Query: 459 MAENQFRVGLVRVERAVKERL--------------------SLGDLDTLMPQDMINAKPI 498 M F + +K+ + + D+ LMP D+I Sbjct: 444 MISILFEDFYKKFLSNMKKSIESILVKYLEANPNPAKGENSNFPDIFGLMPTDIITNGMQ 503 Query: 499 SAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRDV 550 +A G+ + +F M+++ ++ IS++ G +T+ + FE R + Sbjct: 504 NAIAT---GNWNIKRFRMEKSGVSQVLSRLSYISSI--GMMTKTDSQFEKGRKVSGPRAL 558 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK-VTDGVVTDEIHYLSAI 609 P+ +G +CP +TPEG + GL+ +LS+ + TP + + + + I LS+ Sbjct: 559 QPSQFGILCPCDTPEGESCGLVKNLSLMTHVTSD--VPTPVLETLLFTLGVEPIDTLSSH 616 Query: 610 EEGNYV--------------IAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVD 651 + N + N L V ++ R +G ++F + Sbjct: 617 DMFNPWKGTSEKCDNLLNARLVLLNGILLGIHRNAKFLVNSIIKLRRRGLINMFVSVYEN 676 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV-----------------PTLR 694 + S G L L + + + +Q V + Sbjct: 677 SQQNQV-HISSDGGRLCRPLIVVQNSVPRLTDELVQQLVENKIKMEYLFNNGILEWIDVN 735 Query: 695 ADKPLVGTGMERAV------AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 + L+ E+ + S ++ + G++ + + ++ + M G Sbjct: 736 EENNLLIVMREKDITNLTTHLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGS 795 Query: 749 DIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 Y ++ R + Q P V+ + +L GQN VA M Sbjct: 796 IGY--NQFQRCDTVVHLMNYTQQPLVTTKTI----------QLVNFDKLPAGQNAIVAVM 843 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 + GY ED+I++++ + ++ L C T + P+ + S Sbjct: 844 SYQGYEIEDAIILNKASIDRGFARCYTLRRLTCEI--TSGNATSLNGFNPSKSQNKDSDS 901 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG-- 923 + ++ +G +V+ G +L+ P + +K + D V Sbjct: 902 NNEFVIGVGEQVSPGQVLISTKAPPTDFTTNGSMNGKGTDKNQKTGN--DDKYIVNKYNL 959 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 +G ID + T + + + + + + S G + + Sbjct: 960 NTGGCIDRVILTENYNGNKMYKIMVRQSRPPEIGDKFSS-----RHGQKGVVGLIAEHED 1014 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 + + +P G +L +L + Sbjct: 1015 MPFTESGIVPDLIMNPHGFPSRMTVGKLLELVASKSSVFS 1054 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 89/464 (19%), Positives = 170/464 (36%), Gaps = 61/464 (13%) Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS---GTVIDVQVFTRDGVEKDKRALE 947 +L + + A+ + +++D+ + + ++ T + + +L Sbjct: 828 NFDKLPAGQNAIVAVMSYQGYEIEDAIILNKASIDRGFARCYTLRRLTCEITSGNATSLN 887 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 Q K S ++ G VL++ + Sbjct: 888 GFNPSKSQNKDSDSNNEFVIGVGEQVSPGQVLISTKAPPTDFTTNGSMNGKGTDKNQKTG 947 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + + + ++ + + K+ K+ + R + GDK + Sbjct: 948 NDDKYIVNKYNLNTGGCIDRVILTENY----------NGNKMYKIMVRQSRPPEIGDKFS 997 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KGV+ I EDMP+ E+G D+++NP G PSRM +G++LE ++ G+ Sbjct: 998 SRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKLLELVASKSSVFSGNF 1057 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 +++ L + + Sbjct: 1058 VDSTPFSNSYSDNLCNDLNNSG-------------------------------------- 1079 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 K ++I ++L G+ LY G +G + +G +Y +L H+V DK+HAR Sbjct: 1080 -SNKMSDICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARG 1138 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK 1303 G +T+QP G+++ GG R GEME L AYG++ L E L + SD +V Sbjct: 1139 RGPRQPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLLVERLMLSSDVFNIEVCSSCG 1198 Query: 1304 MY-----KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 N + +P + +L +E++++ I L + Sbjct: 1199 FMGYNNFCKFCQNNSLAQVSLPYACKLLFQELQAMNIRPSLIVK 1242 >UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis RepID=A9VCU6_MONBE Length = 1136 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 117/504 (23%), Positives = 194/504 (38%), Gaps = 98/504 (19%) Query: 883 LVGKVTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFT 935 +V TP + +P ++ + G +K D+ L N ++ + + Sbjct: 681 IVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQAIKYRADNKLYSLNSGQTPLVRPRAYN 740 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR---IRAVLVAGGVEAEKLDK- 991 GV+ + D+ + + IL G R VL ++ + K Sbjct: 741 EYGVDNFPVGNNAIVCVIAYTGYDMEDAM-ILNKGSVERGFMHARVLATKVIDLTEKTKS 799 Query: 992 ---------LPRDRWLELGLT--DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 LP+DR L + D + ++ ++ D L + R +I +G+ Sbjct: 800 RVCHYYFGVLPKDRSANLKMEKLDADGLPRVGAHIKEGDALYSYIDGSTNESRTEIYRGE 859 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 + + V + L++ R GDK A RHG KG++S++ P DMP+ E+G DI+ NP Sbjct: 860 --PAIIDRKVTIRLSINRNPIIGDKFASRHGQKGILSQLWPTADMPFSESGIIPDILFNP 917 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 G PSRM IG ++E+ G +A G D Sbjct: 918 HGFPSRMTIGMLIESMAGKSAALHG-------------------------------VAHD 946 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + F E + E L+ G R+Y G TGE+ Sbjct: 947 ATPFMFNE-------------------NERAVDYFGEQLRTAGYNYHGHERMYSGITGEE 987 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 FE + +G ++ +L H+V DK R+ G + +T+QP+ G+ + GG RFGEME AL Sbjct: 988 FEVDIFIGNVFYQRLRHMVSDKFQVRTQGPVNSLTRQPVKGRKKNGGIRFGEMERDALLG 1047 Query: 1281 YGAAYTLQEMLTVKSD----DVNGRTKM-------------------YKNIVDGNHQMEP 1317 +G A+ LQ+ L SD DV + + DG + Sbjct: 1048 HGTAFLLQDRLFNCSDRSEVDVCRKCGSLLSPYSSEKTAANRIRVLRCRGCSDGGEVVRV 1107 Query: 1318 GMPESFNVLLKEIRSLGINIELED 1341 +P F L E+ ++ I + L+ Sbjct: 1108 NLPYVFRYLTAELSAMNIRLSLDV 1131 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 113/753 (15%), Positives = 237/753 (31%), Gaps = 85/753 (11%) Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 L + + L+ + + ++ +M F I N K+ Sbjct: 148 LPIMIMSNACRLNGLSPRELVMKKEEAQEMGGY----------FIINGNEKIVRMLLMPR 197 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 I V Y + T + + +L + Q Sbjct: 198 RNHPICLDRPSYVNRGPGYSSYGVQMRCVRPDQSAQTVVVHYKNDGTCTLGFSYRKQQYL 257 Query: 330 HKRIETL-FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE-PPTREAAESLFEN 387 I L + + + +R D +N L VEI E +++A + N Sbjct: 258 IPAILLLRALSGVSDRQIFMDIVRGDMSNSFLVERVEIMLRQYTRERLFSQQACLAYLGN 317 Query: 388 LF-----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 LF + D+ A + F R LL ++ +++++ + G + Sbjct: 318 LFKVILNLHPETSDVEA-AHILFKRVLLVHIAPNDFQAKYRVLVGLIRRVYSLAAGSTQP 376 Query: 443 DDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP- 497 D+ D + + G + + Q LV +++ V+ L +G + + + Sbjct: 377 DNADSQMLQELLLPGHIYCAFVKEQMSEYLVAMQKLVQTDLRMGKTVDVSNTNYLQTDVM 436 Query: 498 -----ISAAVKEFFGSSQLSQ--------------FMDQNNPLSEITHKRRISALGPGGL 538 I + ++ F + L+ D+ N L ++H R + G Sbjct: 437 RRCPDIGSKLEYFMSTGNLNSPTALDQMQVTGFTIVADKLNFLRYLSHFR---CVHRGAY 493 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 + VR + P +G +CP+ TP+G GL+N L+ + + G+ Sbjct: 494 FSQMKTTAVRKLLPEAWGFLCPVHTPDGAPCGLLNHLARHCLPPTEPVDISSLPPTLLGL 553 Query: 599 V---TDEIHYLSAIE--EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 E + ++ +++ L++ F E L + + + + + ++ Y+ Sbjct: 554 GMIAVSEQPHFHCLDVLLDGHLVGFL--ALEQAPKFAEQLRILKIRDDERVPNTLEIAYV 611 Query: 654 ------DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV---GTGM 704 + S A L+ + + + ++ + K V T M Sbjct: 612 APRAAGQFPGLYLFSTPARLLRPVRNLRMKSTEFVGSFEQVYLNVAVDPKEFVSGETTHM 671 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E ++ + D ++ + + +M G+ + R++ Sbjct: 672 ELTK-----HGFLSIVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQAIKY--RADNKLY 724 Query: 765 IN---QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 Q P V E G + +G N V + + GY+ ED++++++ Sbjct: 725 SLNSGQTPLVRPRAYNEYG----------VDNFPVGNNAIVCVIAYTGYDMEDAMILNKG 774 Query: 822 VVQEDRFTTIHIQELACV--SRDTKLGPEEITADIPNVGEAALS--KLDESGIVYIGAEV 877 V+ + + +P A L KLD G+ +GA + Sbjct: 775 SVERGFMHARVLATKVIDLTEKTKSRVCHYYFGVLPKDRSANLKMEKLDADGLPRVGAHI 834 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 GD L + T + AI K Sbjct: 835 KEGDALYSYIDGSTNESRTEIYRGEPAIIDRKV 867 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 92/268 (34%), Gaps = 67/268 (25%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ--SYSGNSELQYVSYRLGEPVFD----- 81 + +DSF ++ GLE A + P+ + + L RL +P Sbjct: 49 APHVDSFNYMVKH------GLEQAVADLDPLTFVAQNKTISLSIAKCRLEQPTVSRKEGF 102 Query: 82 -------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN- 133 EC+ R VTY + + + + + + Y+G++P+M + Sbjct: 103 STANALYPAECRQRRVTYKGDFYLTVNIEVEGQPNAWQVER-------YVGQLPIMIMSN 155 Query: 134 -----------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 G F+ING E+++ L D+ ++ + Sbjct: 156 ACRLNGLSPRELVMKKEEAQEMGGYFIINGNEKIVRMLLMPRRNHPICLDR-PSYVNRGP 214 Query: 171 LYNARIIPYRGSW---------LDFEFDPKDNL-FVRIDRRRKLPATIILRAL-NYTTEQ 219 Y++ + R + ++ D L F ++ +PA ++LRAL + Q Sbjct: 215 GYSSYGVQMRCVRPDQSAQTVVVHYKNDGTCTLGFSYRKQQYLIPAILLLRALSGVSDRQ 274 Query: 220 ILDLFFEKVIFEIRDNKLQMELVPERLR 247 I ++ N +E V LR Sbjct: 275 IFM----DIVRGDMSNSFLVERVEIMLR 298 >UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYC9_9BACE Length = 1237 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 261/1382 (18%), Positives = 448/1382 (32%), Gaps = 255/1382 (18%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP-EGQYGLEAAFRSVFPIQS 61 +SY RI K + +D+ LL Q +S+QK++ + L R + +Q Sbjct: 2 FSYDPSNRILKVQKLAEEEVDL-GLLEYQKESYQKYLTETIYSDMEYLLQVMREL--LQV 58 Query: 62 YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++E + G E + + +Y P+ K + + E Sbjct: 59 SQVDAEFRVGDLYCGNYK---NEVKKKSPSY-YPVYAKFTI-----------DGAVFPNE 103 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V + IP M ++G NG RV++ Q+ + V + +DK + Sbjct: 104 VEVFRIPAMDEDGILNFNGDRRVLLMQMVAAERVSYAADKQTVSITTPRRN--------- 154 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALN------------YTTEQILDLFFEKVI 229 + FD ++ ++ R K+P ++RA N +T+ IL F Sbjct: 155 --ISLMFDGTKDVTIKYGPRNKIPMHKLIRAYNAKEKVYDDPSKLFTSAYILSAFATDSA 212 Query: 230 FEIR--DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL---EKDDVKL 284 +++L + G+ + + R R + + + ++ Sbjct: 213 ATDEAIEDELDKLNIYATYSGDDYALGKTRDALNEALSLDRARGRILSRPVGPFEAGRRV 272 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + + YI + + Y+ + L+ +L+ +G L + Sbjct: 273 DDEVLHYIHLHCINEIYVKAIPDVV----GYTLTQELVISFVPAGTHNNSRLQEALPEFA 328 Query: 345 PYI--------------SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL------ 384 Y ETL + RPG P R E Sbjct: 329 DYSAIPQDSQVCIFMSSKETLTKEDVQFLYDVGAHHVDCKRPGSAPIRATFEEEVIGNYT 388 Query: 385 -----FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL--IDIRN 437 R+ V N E L+ D++ + I Sbjct: 389 VRLGDIYGHNIPAGRFHDEWV-CFYNNPKF---ERTDMDHLNTHDLMALYSLCAFIKKNP 444 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 + + D D +++ + E+ N R L + +S L+ + Sbjct: 445 EENFLLDKDFGLLKKVLAANELFSNAMREVLPDFVKHYSVSISRAISQNLLTEGKFAG-- 502 Query: 498 ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 +S K++ + NP++ + + L T E ++R + YGR Sbjct: 503 LSDMWKKYLWDKNYLDIANTINPIAVVAQ---TNHLVSDLHTSEIPE-KMRLLSMGFYGR 558 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA 617 +CP ETP G +G+ N+ ++ A+ + G L TPYR+V EI +S +E Y+ A Sbjct: 559 ICPYETPSGKKLGITNTKAIGARIKD-GILTTPYRRVLKNSN-GEIESIS--QEITYMDA 614 Query: 618 QANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 Q +E + DL++ + D Sbjct: 615 Q-----EEAQFRIGDLLSLKK------------------------------------DGY 633 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN 737 R L M R P + V V + ++ + + V Sbjct: 634 RYLNTKVMARVPAPNNQVTVESVDAYTLDYVNAYCEQHL-SPTAALIPFAGSDDAVRVTY 692 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 M + + + S C N V R +G+L L Sbjct: 693 ATNMLKQSILVQGSQIPRVFTSMYRRCFNHS-----NTYVIRAKKDGWVEQIPMGKLQL- 746 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV 857 ++ ED I + E V ++ Sbjct: 747 --------TYDDGTIED-IEICETSVTNQSVNFLNFH----------------------- 774 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 V G GD+LV E +P L A + + +D+ Sbjct: 775 -------------VKEGDHFKKGDVLVD-SAIAREGIYSPGVNLFAAYLAD-GYNYEDAV 819 Query: 918 LRVPNGVSGTV-IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + + I + T + ++ + + + E I + S+ Sbjct: 820 ELSEYAANQFISISTETITHRMHRQSNESIRVGTEYCYRF---IPENGVIAKVSRQSKSD 876 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 A + V R L E+ ++ +LAE Sbjct: 877 ARCHSKDVL--------RSGKHSGILYKIERNHKETRLAEYNA----------------- 911 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 +L R++ GDKMAGRH NKG S I +MP NG +DI Sbjct: 912 ----------------HLLSFNRLRTGDKMAGRHSNKGTASIIRKNSEMPCFMNGRQLDI 955 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 +LNP GVPSRMNIGQ E +LG A + + + ++ ++ +DL + Sbjct: 956 LLNPCGVPSRMNIGQNFEAYLGFIAYLLDVYVESDPFNGATKGDIKLLMRYVWDLANNEN 1015 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 K S + + +R + I++ G G L++ Sbjct: 1016 AKSVCSNYPMLPSTLHEQAIR-------------RHEAIRD--WAGCFNPDGTAYLWNPA 1060 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARS---TGSYSLVTQQPLGGKAQFGGQRFGEM 1273 TG+ E PVT G YMLKL H V+ K HAR+ YS +++QP G A+ GGQ+ GEM Sbjct: 1061 TGKCLENPVTFGVPYMLKLEHEVNHKFHARAGMLEEDYSQISKQPTEGSARGGGQKMGEM 1120 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG--MPES---FNVLLK 1328 E+ AL AYGA L E SD+V R ++ + G +P + F L+ Sbjct: 1121 ELCALAAYGATDFLYETCNSMSDNVLDRVNTTLRTLNLPEYTQGGESVPHAVEMFRYFLE 1180 Query: 1329 EI 1330 + Sbjct: 1181 TL 1182 >UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LHP3_9ALVE Length = 993 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 123/745 (16%), Positives = 231/745 (31%), Gaps = 103/745 (13%) Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 E+ + + E + + + MM G Sbjct: 274 EMGECVFDQGGYFIINGSEKVLIAMERMANNFVYCFQKKQPAKYTWICXXLLDMMPRGRL 333 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI-------LSKDDIIDV 428 P + + Y ++ + LL++E+ I + Sbjct: 334 PWTSSLKEGQPLGHRRVVVYTGLPNVYNRYAKELLQKELLPHLGVKQYCEPRKAYFIGYM 393 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDT 486 + +L+ + G+ DD DH G +R+ G + F ++ + K L Sbjct: 394 VHRLLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQVDSGRH 453 Query: 487 LMPQDMI-NAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISA 532 I +A I+ ++ + SQ +++ +S ++H RR++ Sbjct: 454 FDLNSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHLRRMNT 513 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 L R + R +H TH+G +CP ETPEG +GL+ ++++ G L Sbjct: 514 ----PLERSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITV-GSLPNVVY 568 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 + + + ++ + + N G +V E+ R + D Sbjct: 569 DFLNEWGLENLDEINPSQIKHMTKVFLN------GQWVGMHADATMLCETLRDLRRKRDI 622 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME----RAV 708 + L F + A R L Q P+ + + +E + Sbjct: 623 DPEVSIIRDLQANELRIFTDGGRACRPLYVV----QPPPSQK--LCIKREHVEALRRMLL 676 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIV-------------------------IKVNEDEMYP 743 + G + G+V+Y+DA E++P Sbjct: 677 NNEHGGWDMLVEEGLVEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTHCEIHP 736 Query: 744 GEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------ 788 I + +S +NT + M ++G ++ D + Sbjct: 737 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYATNFNMRIDTMAHVLNYPQKPLVG 796 Query: 789 ------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 EL G N VA M ++GYN EDS++++ + ++H + + Sbjct: 797 TRAMEYLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMADEKR 856 Query: 843 TKLGPEEITA-----DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 E + SKLD G++ G V G DIL+GKV+P T Sbjct: 857 QGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPN--QTD 914 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 EE ++ +D S+ + +G V V + K + Sbjct: 915 EEGRIQ------KYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTLRVPTIGD 968 Query: 958 KDLSEELQILEAGLFSRIRAVLVAG 982 K S Q G+ R + Sbjct: 969 KFASRHGQKGTMGISYRQEDMPFTQ 993 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 66/209 (31%), Gaps = 62/209 (29%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY----------- 62 + L+S Q+ SF F+ ++ PI Sbjct: 114 SWAVADAYFKDKGLVSQQVGSFDDFVTYK------MQEIVDECPPITIIPQNQVGWESEG 167 Query: 63 -----SGNSELQYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIY-- 105 + +++ L +P + ++R +TYS+P+ V + Y Sbjct: 168 ARVYMDSSFLVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYAL 227 Query: 106 ----EREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------GTFV 137 + + + + + ++ +G IP+M + G F+ Sbjct: 228 ADPDDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFI 287 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHS 166 ING+E+V+++ + + K + Sbjct: 288 INGSEKVLIAMERMANNFVYCFQKKQPAK 316 >UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54649 Length = 440 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 210/440 (47%), Positives = 286/440 (65%), Gaps = 27/440 (6%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 SQLHRSPGVFFD D+GKTH+SGKVLYNARIIPYRGSWLDFEFD KDNLF RIDR++K+ Sbjct: 1 CCSQLHRSPGVFFDHDEGKTHASGKVLYNARIIPYRGSWLDFEFDHKDNLFFRIDRKKKM 60 Query: 205 PATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDNKLQM 239 +T IL+AL T+E+IL F+E F+ + N + Sbjct: 61 ISTTILQALPSKASEKYLEECHQNKVDPDIYKVSGMTSEEILTYFYETFTFKKQKNGWVV 120 Query: 240 ELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 L + + + F++ + ++ K +++ + +++++ V E + G + Sbjct: 121 NLDLNKFKYKNLPFNLVDPLSKEIVAHKDVKLSLKLLKEIKDKKVSKFFFTEEDLYGFYL 180 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 + D ++ G + A LS + +L++ + + N I +L D N Sbjct: 181 SNDIVNYDNGLVYAEAGTLLSKEFFERLNELSIDQFSVVNANQATGNLGIINSLVADKNN 240 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 R AL +I++++RPGEPPT EA+ LF+N+FFSEDRYDLS VGR+K N L ++ S Sbjct: 241 SREEALFDIFKILRPGEPPTLEASNYLFQNMFFSEDRYDLSEVGRVKLNSYLSLDKTNKS 300 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 ILSK D++ V KKL D++ DDIDHLGNRR+RSVGE+ ENQ+R+GLVR+ERA++E Sbjct: 301 RILSKSDVLAVAKKLFDMKTESAGKDDIDHLGNRRVRSVGELIENQYRIGLVRMERAIRE 360 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 ++ D++++MPQD++N+KPI +KEF G+SQLSQFMDQ NPLSEITHKRRISALGPGG Sbjct: 361 KMGTVDIESIMPQDLVNSKPIQTVLKEFTGTSQLSQFMDQTNPLSEITHKRRISALGPGG 420 Query: 538 LTRERAGFEVRDVHPTHYGR 557 LTRERAGFEVRDVH THYGR Sbjct: 421 LTRERAGFEVRDVHTTHYGR 440 >UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeota RepID=A9A459_NITMS Length = 1115 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 163/847 (19%), Positives = 300/847 (35%), Gaps = 102/847 (12%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY--IAGKVVAKDYIDESTGE 308 F I + +V V + I E ++ Y I G + + ++ G Sbjct: 150 GYFIINGSERVIVGLEDLSYNKIIVDRETVGGNIVHKAKVYSSIVGYRAKLELVMKNDGL 209 Query: 309 LICAA-NMELSLDLLAKLSQSGHKRIETLFTN----DLDHGPYISETLRVDPTNDRLSAL 363 ++ + + ++ + G + + D + + A+ Sbjct: 210 IVARIPGSPVDIPVVTLMRALGLESDREIAAAVSLVDELQDELEASFEKAGDVPTAKDAI 269 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 V I + + PG E + D L +G+ NR Sbjct: 270 VYISKRIAPG-----MLEEFQIKRAETLLDWGLLPHLGKHPENRK-----------EKAQ 313 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + KL++++ DD DH GN+ I+ G+M + FR + R +K +L Sbjct: 314 FLGEAACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSG 373 Query: 484 LDT--LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALG 534 I I+ + + +Q +D+ N LS I+H RRI + Sbjct: 374 QKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQS-- 431 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 L+R + FE RD+H TH+GR+CP ETPEG N GL+ +L++ + E K+ Sbjct: 432 --PLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKL 489 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 D +H+ A E+ + + +G + + + + RD Sbjct: 490 YD---LGTVHFFDAKEDLKK----DGTRIFVDGRLIG---YYKDGEQLAESLRDLRRNSK 539 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT--LRADKPLVGTGMERAVAVDS 712 + VS S I R + N R P ++ +KPL+ + ++ Sbjct: 540 IHPHVGVSFHKSEI----EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISKKL 595 Query: 713 GVTAVAKRGGVVQYVDASRIV--IKVNEDEMYPGEAGID------------IYNLTKYTR 758 R GV++ +DA+ +++ ++ I ++ + Sbjct: 596 ISWTDLLRMGVLEMIDANEEENCYVTLDEKDTKKHTHLEVFPPAILGAGASIIPYPEHNQ 655 Query: 759 SNQNTCINQMPCVSLG---------EPV-ERGDVLADGPSTDL--------GELALGQNM 800 S +NT + M SLG V + + P + + GQN Sbjct: 656 SPRNTYESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNC 715 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN---- 856 VA +P++GYN ED+I++S+ V T + ++ G + +IPN Sbjct: 716 VVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRD-AFEIPNAEDN 774 Query: 857 ----VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 912 GE A L+E G+V A V GGDIL+GK +P + E F Sbjct: 775 IRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSPPRFMEEYRE-------FESSGPY 827 Query: 913 VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF 972 +D+S+ V +G V V + + K + + + K S Q G+ Sbjct: 828 RRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGVLGIL 887 Query: 973 SRIRA--VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 ++ +G ++ + +G+ E + L + + +K++ Sbjct: 888 AKAEDLPYTASGMSPDVLINPHAFPSRMTVGMMMESICGKSAALRGKRFDGSAFVGEKMD 947 Query: 1031 AKRRKIT 1037 R + Sbjct: 948 EVREVMD 954 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 156/411 (37%), Gaps = 82/411 (19%) Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 A EI + ++LE A + G + K PR Sbjct: 765 AFEIPNAEDNIRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSP-PRFMEEYREFES 823 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + + + E +TQ ++ K+ K+ R + GD Sbjct: 824 SGPYRRDTSIGVRPSETG-------VVDTVVMTQSNE----GGKMYKIRARDMRIPEIGD 872 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K A RHG KGV+ + ED+PY +G D+++NP H + + Sbjct: 873 KFASRHGQKGVLGILAKAEDLPYTASGMSPDVLINP---------------HAFPSRMTV 917 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G + ++ + +G Sbjct: 918 GMMMESICGKSA---------------------------------------ALRGKRFDG 938 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 F G K E++E++ SG+ +YDGRTG+ F V +G +Y KL+H+V DK+H Sbjct: 939 SAFVGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIH 998 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-------- 1296 AR+ G ++T+QP G+A+ GG RFGEME L AYGA+ L++ L +SD Sbjct: 999 ARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCE 1058 Query: 1297 --------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 DV R + + D + +F +LL+E++SL + L Sbjct: 1059 RCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 119/345 (34%), Gaps = 67/345 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV--FPIQSYSGNSELQY 70 K + +L + L+SF +F+E+ GL++ V I++ ++Q Sbjct: 7 KRWPVIQDILKREGIARQHLNSFDEFLER------GLQSIINEVGQIDIENAEYPYKIQL 60 Query: 71 VSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +L +P E ++R V+YSAP+ ++ +V K ++ + Sbjct: 61 GKVKLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVV--------EDGKILESR 112 Query: 121 EVYMGEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPG-V 155 V++G++P+M G F+ING+ERVIV S + Sbjct: 113 FVHIGDVPVMAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKI 172 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR-KLPATIILRALN 214 D + + K + I+ YR + L+ + RI +P ++RAL Sbjct: 173 IVDRETVGGNIVHKAKVYSSIVGYR-AKLELVMKNDGLIVARIPGSPVDIPVVTLMRALG 231 Query: 215 YTTE--------------QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 ++ L+ FEK + + G F I+ Sbjct: 232 LESDREIAAAVSLVDELQDELEASFEKAGDVPTAKDAIVYISKRIAPGMLEEFQIKRAET 291 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + +H ++ L E + + K+ D+ Sbjct: 292 LLDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLDWIRPDDKD 336 >UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSV4_ENTBH Length = 1138 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 149/873 (17%), Positives = 281/873 (32%), Gaps = 89/873 (10%) Query: 183 WLDFEFDPKDNLF---VRIDRRRKLPA-TIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 W++ D K + + +D + + L + + L +K + + Sbjct: 114 WVNMFIDVKKAYYENGIEVDVSKTIRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYD 173 Query: 239 MELVPERLRGETASFD---IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 GE I N +K + + ++ ++P + Sbjct: 174 QGGYFIITGGEKVIVAQERIATNMVHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKV 233 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL--FTNDLDHGPYISETLRV 353 V I S + L + L + K I + + ND + Y+ +L Sbjct: 234 VKNLRVIRAS---INLVKQDIPVLIIFRALGFNSDKEILSYIQYDNDKELNEYLLNSLEE 290 Query: 354 DP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 D+LSAL I + P + + L +G+ Sbjct: 291 ASCIQDQLSALDFIGKR----SAPIGSPKSKRIDFAKQILIKEFLPHIGQQ--------- 337 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 E + ++ K++ + GK +VDD DH G +R+ G + N F+V ++ Sbjct: 338 --EFCETKKAYFLGYMINKILLVITGKRDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLL 395 Query: 473 RAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQ 517 + L + + + I+ K + +Q + + Sbjct: 396 TETTKYLQKCVENNREFNLTIGLKSSIITQGFKYALATGNWGHQEKAMSTRAGVAQVLSR 455 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N LS ++H RR++ + +E R +H TH+G +CPIETPEG GL+ +LS+ Sbjct: 456 YNFLSTLSHLRRVNT----PIEKEGKLAAPRQLHNTHWGMICPIETPEGHACGLVKNLSL 511 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE-EGNYVIAQANSNLDEEGHFVEDLVTC 636 A + G ++ + + + + + I V + V+ L Sbjct: 512 MAYISV-GKSSNQIIEILEELGVERLEEIEYIYGTKILVNGAWIGVTSDPVRIVQILKKF 570 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R GE D + + + S L + N L+ Sbjct: 571 RRHGEIDSEISIIFDIKENEIK-INSDAGRPCRPLFIVENNELLVNKQDIEDLKNIKIKW 629 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG---EAGIDIYNL 753 L+ G + G+ D ++ + E++P + Sbjct: 630 DDLIKNGK-IELLDIEEEEVSLIAMGLNDLKDTNK---QYTHCEIHPAIILGITASVIPF 685 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------------TDLGELA 795 + S +NT + M ++G D S EL Sbjct: 686 PTHNPSPRNTYQSAMGKQAMGIYSTNFFKRMDTLSNILCYPQKPLVSTKSMEYIKFKELP 745 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI----- 850 GQN VA ++GYN EDSI++++ + F + + + + G E Sbjct: 746 SGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKICKIE 805 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 + I + L GIV G +V G D+++GK+TP + + ++ G Sbjct: 806 RSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGKMTPILDVE--------KSTPGNPF 857 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 KD+S + G + V V T+DG + K + + K S Q G Sbjct: 858 YLFKDTSTLIRKTEQGNIDKVIVTTKDGYKFTKVKVRS-MRIPQMGDKFASRHAQKGVVG 916 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + + + P + + Sbjct: 917 ITLKQEDMPFTSDGLIPDVIINPHAIPSRMTIG 949 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/469 (18%), Positives = 163/469 (34%), Gaps = 86/469 (18%) Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL--- 946 +L + + AI + +DS + + + +F ++ + Sbjct: 739 IKFKELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTGVN 798 Query: 947 -EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 +I +++ + IL + V K+ P + + Sbjct: 799 EKICKIERSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGKM--TPILDVEKSTPGNP 856 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 + + E + I + K KV + R Q GDK Sbjct: 857 FYLFKDTSTLIRKTEQGN------------IDKVIVTTKDGYKFTKVKVRSMRIPQMGDK 904 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 A RH KGV+ EDMP+ +G D+++NP +PSR IG Sbjct: 905 FASRHAQKGVVGITLKQEDMPFTSDGLIPDVIINPHAIPSR---------------MTIG 949 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 A+L + G+ Sbjct: 950 HLFEALLGKL---------------------------------------TTLNGIEGDAT 970 Query: 1186 VF--DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 F EI + L G ++ G TG + + + +G Y +L H+VDDK+ Sbjct: 971 PFANKPQTIDEISKELAKYGYQKRGFEIMHSGATGYKLKSQIFIGPTYYQRLKHMVDDKL 1030 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HAR+ G ++T+QP+ G+++ GG RFGEME + ++GA+ L+E L SD Sbjct: 1031 HARARGPLQIMTRQPVEGRSREGGLRFGEMERDCIISHGASAFLKERLMDVSDVYT--CG 1088 Query: 1304 MYKNI----------VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + N + + +P +F +L++E++ + I + ++ + Sbjct: 1089 VCDNCGLICNNNCTGCNNSTISNINIPYAFKLLIQELQGMNIFMRIQTQ 1137 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 64/391 (16%), Positives = 130/391 (33%), Gaps = 58/391 (14%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ----SYSGNSELQ 69 ++ D L+ QLDSF +F++ + E + SV I S +L Sbjct: 21 NWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIID-ENSIISVKSIPTAGNSIEREIKLY 79 Query: 70 YVSYRLGEP-----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 + + P E ++R +TY + + ++ YE K I+ Sbjct: 80 FGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYYENGIEVDVSKTIR 139 Query: 119 EQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPG 154 V G +P+M + G F+I G E+VIV+Q + Sbjct: 140 ---VPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVIVAQERIATN 196 Query: 155 VFFDSDKGKTHSSGKVLYNARI--IPYRGSWLDFEFDPKDNLFVRIDR------RRKLPA 206 + K Y A I + GS L F K +R+ R ++ +P Sbjct: 197 MV---HIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKVVKNLRVIRASINLVKQDIPV 253 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 II RAL + +++ + + + + N+ + + E + ++ GK G Sbjct: 254 LIIFRALGFNSDKEILSYIQYD-NDKELNEYLLNSLEEASCIQDQLSALDFIGKRSAPIG 312 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 + R + + + + + ++ +++ + + Sbjct: 313 SPKSKRIDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLVITGKRD---VDDRD 369 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 G KR++ + + + L + T Sbjct: 370 HYGKKRMDLSGPLLANLFKVLFKKLLTETTK 400 >UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax=Chlorella vulgaris RepID=RPOB_CHLVU Length = 1301 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 163/527 (30%), Positives = 254/527 (48%), Gaps = 66/527 (12%) Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 H + + R K+ + I + E I+ V GD+L Sbjct: 792 HKKLHSEDFRKNKVEITTTYSLIQYQRTNQSTCFSERPILPENEWVEKGDLLAD-GASSS 850 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 + +L+ + +L A + + +D+ L +S ++D ++FT ++ A++ + Sbjct: 851 QGKLSIGQNVLVAYLPWEGYNFEDAIL-----ISQRLVDQEIFTSLHMDHYDIAVQNTQY 905 Query: 952 QLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKL--------- 992 L++ + ++ L++ I + + G K+ L Sbjct: 906 GLERITNLIPLKISDSTRDIYKMGNLDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPLQS 965 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 P ++ + L E+ + L ++ + +L+ V+V Sbjct: 966 PHEKLYNVILQREKTSFRNTSLRVPKGVQGFVLGVQILPSQEPDVAALAEKDEILR-VRV 1024 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L +R+IQ GDKMAGRHGNKG++S I P +DMPY +GTPVDIVLNPLGVPSRMN+GQI Sbjct: 1025 LLLQRRKIQVGDKMAGRHGNKGIVSLILPRQDMPYLPDGTPVDIVLNPLGVPSRMNVGQI 1084 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 LE LG+A + ++ L +Q GA+ + + S + Sbjct: 1085 LECLLGLAGHFLHERYTTYLFDEQY--------------GAEASRSLVYSKLYQASLKTR 1130 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 + + G+IR++DGRTG F++P+T GY Y+ Sbjct: 1131 NP-------------------------WVFEPHHPGKIRVFDGRTGLTFDQPITAGYAYI 1165 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 LKL HLVDDK+HAR TG YS +TQQP+ G+A+ GGQR GEMEVWAL+AYGAA+TL E T Sbjct: 1166 LKLVHLVDDKIHARPTGPYSAITQQPVKGRARNGGQRLGEMEVWALQAYGAAHTLHEFFT 1225 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 VKSDD++GR + NI N + G PESF ++L+E+++L N ++ Sbjct: 1226 VKSDDLDGRQQAVLNIY-ANKPVTTGNPESFKLILRELQALCFNFQV 1271 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 153/592 (25%), Positives = 257/592 (43%), Gaps = 48/592 (8%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 L+ F P+ F + D +K A ++ + + I K R L + ++P Sbjct: 78 LEIRFFPEGIQFRKPDFTQKQ-AVVLGKIYG-SAVYIPVGIHSKKSSTFRIEWLFVGILP 135 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + F + +V + + R + + + + + K Sbjct: 136 --IMTRQGHFVVNGVSRVVLHQMVRNPGIYTLPI---HPRTKIGTLRIVPEKGGWIHITV 190 Query: 304 ESTGELI-CAANMELSLDLLAKLSQSGH-----------------KRIETLFTNDLDHGP 345 + + ++ + LL L G + L H Sbjct: 191 DKKHRVWFLTRSLRRKVSLLIFLQAVGIPFHDIFLRLEHSKILQNSFVAELGEGSARHDD 250 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPP-------TREAAESLFENLFFSEDRYDLS 398 + + A +Y + P + A F + +++D+ L Sbjct: 251 VLERAGLYAHPATQEEAWQYLYSHFKEYSPYAHKNLAAKEQTAREFFYSTLWNKDKLILG 310 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 +GR +F + E + L+++D+++ + L+ + + K VD+ID L +RIR E Sbjct: 311 HIGRQQFREKIGSIEPLENTSLTREDLLEATQALLSLMHKKRVVDEIDSLTQKRIRGCDE 370 Query: 459 MAENQFRVGLVRVERAVKERLSL-----------GDLDTLMPQD-MINAKPISAAVKEFF 506 G+ E + +++ +L Q+ + +K +S + K FF Sbjct: 371 FLLEHLATGMKEFELFFRRKVTFLPATKSITGAENPFRSLWRQNKAVFSKTVSKSWKRFF 430 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 S L QFMDQ N L+E THKRR++ LGPGG++ ++ ++R +HPT+YGR+CPIETPEG Sbjct: 431 TSGTLGQFMDQTNSLAETTHKRRLTVLGPGGISGKQTTIQIRGIHPTYYGRLCPIETPEG 490 Query: 567 PNIGLINSLSVYAQTNEYG--FLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANSN 622 N GL+NS +V + ++YG L TP+ +V G V + L S +E + A A+ Sbjct: 491 KNAGLVNSFTVLSVLSKYGARTLTTPFYQVYKGQVQKTLPPLRVSPRQEYKLIEAPADIQ 550 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 L + + R + ++ V Q +SV SLIPFLEH+DANRALMG Sbjct: 551 LTAWNVLPKTHLPVRKELNFHSDVATRITTQSVGILQNISVATSLIPFLEHNDANRALMG 610 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 +NMQRQAVP L+ PLVGTG+E V D + A + G + V +++I + Sbjct: 611 SNMQRQAVPLLKPQAPLVGTGLESRVIGDVNHSMQASKTGFITKVSSTKIQV 662 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 14/265 (5%) Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 Y+L +Y R+NQ+TC ++ P + E VE+GD+LADG S+ G+L++GQN+ VA++PW Sbjct: 808 TTTYSLIQYQRTNQSTCFSERPILPENEWVEKGDLLADGASSSQGKLSIGQNVLVAYLPW 867 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS---- 863 GYNFED+IL+S+R+V ++ FT++H+ ++T+ G E IT IP + Sbjct: 868 EGYNFEDAILISQRLVDQEIFTSLHMDHYDIAVQNTQYGLERITNLIPLKISDSTRDIYK 927 Query: 864 --KLDESGIVYIGAEVTGGDILVGKVT---PKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 LD G+V IG+ V GD LVGK++ PK +P EKL I + + +++SL Sbjct: 928 MGNLDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPLQSPHEKLYNVILQREKTSFRNTSL 987 Query: 919 RVPNGVSGTVIDVQVFTRD----GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 RVP GV G V+ VQ+ +K + + L Q +K + G Sbjct: 988 RVPKGVQGFVLGVQILPSQEPDVAALAEKDEILRVRVLLLQRRKIQVGDKMAGRHGNKGI 1047 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLE 999 + +L + D P D L Sbjct: 1048 VSLILPRQDMPY-LPDGTPVDIVLN 1071 >UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplantae RepID=Q01GR3_OSTTA Length = 999 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 135/827 (16%), Positives = 265/827 (32%), Gaps = 121/827 (14%) Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 E F I + KV + + R T +K K + G Sbjct: 27 EGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPSKFMWQAECR----------SQPERGS 76 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE--- 365 ++ + + + G R + + L D L + Sbjct: 77 RGASSCVMRQMHAVGTKDAPGPIRCTLPYIRTDIPIFVVFRALGFVADKDILEHICYDLA 136 Query: 366 ---IYRMMRPG--EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE------- 413 + M+RP E ++ E + + +S R+K+ + +L++E Sbjct: 137 DNEMMEMLRPSIEEAFVIQSQEVALDFIGKRGSAVGVSREKRIKYAKEILQKELLPHVGV 196 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E + ++ +L+ G+ DD DH GN+R+ G + FR ++ + Sbjct: 197 REDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTK 256 Query: 474 AVK--ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNN 519 V+ + + + Q I AK I+ +K + SQ +++ + Sbjct: 257 DVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLATGNWGSQGAQDIRAGVSQVLNRLS 316 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 S ++H RRI++ + RE + R +H + +G +CP ETPEG +GL+ +L++ A Sbjct: 317 YSSTLSHLRRINS----PIGREGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMA 372 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN----SNLDEEGHFVEDLVT 635 + G P + D + + +S N + V L Sbjct: 373 LVSV-GSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGVHRDPADLVRTLRK 431 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL-- 693 R + + S V + + ++ + L D ++ L +++Q + L Sbjct: 432 LRRQCDVDS-SVSVVHDIRLKELRLYTDYGRCTRPLFIVDDDQKL---RIKKQHIELLTE 487 Query: 694 -----RADKPLVGTGMERAVAVDS------GVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 + LV +G V + +T + + I+ E++ Sbjct: 488 KDVTGYSWNELVTSGFIEYVDTEEEETTMISMTIDDLAAARQSADRKTGVAIRYTHCEIH 547 Query: 743 PG---EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS----------- 788 P I + +S +NT + M ++G V + D Sbjct: 548 PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLV 607 Query: 789 -------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 EL G N VA M + GYN EDS+L+++ + F +++ + + Sbjct: 608 TTRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEK 667 Query: 842 DT-KLGPEEITADIPN----VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 L EE + + KLD+ G++Y A ++ Sbjct: 668 KQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLSK----------------- 710 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 KD S + + +G + V + T D + + + Sbjct: 711 -------------RFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVG 757 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 K S Q G+ + + P + + Sbjct: 758 DKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIG 804 Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 111/558 (19%), Positives = 200/558 (35%), Gaps = 104/558 (18%) Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA--EVTGGDIL- 883 T+ I+ + +T + I+ I ++ A S ++G+ E+ IL Sbjct: 498 LVTSGFIEYVDTEEEETTM----ISMTIDDLAAARQSADRKTGVAIRYTHCEIHPSMILG 553 Query: 884 -VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI----DVQVFTRDG 938 + P + +P ++ G++A + ++ ++ G V+ V TR Sbjct: 554 ICASIIPFPDHNQSPRN-TYQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLVTTRAM 612 Query: 939 VEKDKR--------ALEIEEMQLKQAKKDLSEELQILEAGLFSRI------RAVLVAGGV 984 R + I + + ++ GLF + G + Sbjct: 613 EYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSL 672 Query: 985 EAEKLDKLPRDRWLEL------GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 E+ ++ RD L + L D+ L++++ + K Sbjct: 673 SREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLSKRFSKKDCSTGMKHAETGIIDQV 732 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 L+ VK+ + R Q GDK + RHG KG + EDMP+ G DI++ Sbjct: 733 LLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIV 792 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP +PSRM I G + ++ + Sbjct: 793 NPHAIPSRMTI---------------GQLVECIMGKVAACM------------------- 818 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 G F +I +L G +Y+G TG Sbjct: 819 --------------------GKEGDATPFTPVTAEDISTMLHKCGYQKRGNEVMYNGHTG 858 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + + +G Y +L H+VDDK+H+R G ++T+QP+ G+++ GG RFGEME + Sbjct: 859 RMLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCI 918 Query: 1279 EAYGAAYTLQEMLTVKSD----DVNGRTKM-------------YKNIVDGNHQMEPGMPE 1321 ++GAA L+E L +SD V + + KN + ++ +P Sbjct: 919 MSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFECCKNPSERTSVVQVMVPY 978 Query: 1322 SFNVLLKEIRSLGINIEL 1339 + +L +E+ S+ I L Sbjct: 979 ACKLLFQELMSMAIAPRL 996 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 94/291 (32%), Gaps = 28/291 (9%) Query: 107 REAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHS 166 R ++ +GE P + G FVING+E+V+++Q S + +K K S Sbjct: 3 RSDYCSLHGHTDKELTELGECPY-DEGGYFVINGSEKVLIAQERMSTNHVYVFEK-KQPS 60 Query: 167 SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID------------RRRKLPATIILRALN 214 R P RGS + V R +P ++ RAL Sbjct: 61 KFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGPIRCTLPYIRTDIPIFVVFRALG 120 Query: 215 Y-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH 273 + + IL+ + L+ + +F I++ G+R +A Sbjct: 121 FVADKDILEHICYDLADNEMMEMLRPSIEE--------AFVIQSQEVALDFIGKRGSAVG 172 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + + ++ + E + V +D + + LL L + Sbjct: 173 VSREKRIKYAKEILQKELLPHVGVREDCETKKA----YFLGYMIHRLLLCSLGRRPEDDR 228 Query: 334 ETLFTNDLDH-GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 + LD GP +++ R + R + G+ + A Sbjct: 229 DHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIK 279 >UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RNV9_RICCO Length = 1203 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 153/974 (15%), Positives = 304/974 (31%), Gaps = 170/974 (17%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 L+S Q++S+ FI G++ AF S + + EP +D + Sbjct: 75 GLISHQINSYNDFI------NNGIQKAFDSFGEL---------------VVEPGYDPSKK 113 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 Y++ K+ L + K + + MT + +N + V Sbjct: 114 GENEWRYASVKFGKVALEKPTFWSGADEHKMLPRH----ARLQNMTYSSKMKVNVSVEVY 169 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 ++ RS +GK Y +D E DN + I LP Sbjct: 170 TRKVVRS----------DKFKTGKDQY-----------VDKEVLNTDNRNITIG---SLP 205 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 + T + D F+ + + ++ + E++ + V + Sbjct: 206 VMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKS 265 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 + +R + ++ ++ + + ++ + L A + +++ + Sbjct: 266 EIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEI---PLWILFFALGVTSDKEVIDLI 322 Query: 326 SQSGHK-RIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL 384 + RI +F + + + AL + R +R P E + Sbjct: 323 GYGSNDARIVNIFFASIHDADE-----KTEGFRRGKEALEYVVRQIRGTRFPPGENEDFF 377 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 L S + ++K L+ NG+ + ++ Sbjct: 378 L-----------------------LYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNN 414 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL---GDLDTLMPQDMINAKPISAA 501 D N+R E+ E + +V + R + + L GD D + ++A ++ Sbjct: 415 WDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNG 474 Query: 502 VKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 + F + S + + NPL + R+ + + R Sbjct: 475 LSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYH----VQYTGKVGDAR 530 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSA 608 HP+H+GRVC + TP+G N GL+ +L+ + + P +++ S Sbjct: 531 FPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVN--ILEPLIDKLIARGMEKVPEDSH 588 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ---VVSVGA 665 + N V + QV+ QQ + S Sbjct: 589 SDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAG 648 Query: 666 SLIPFL---EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV-------- 714 ++ L ++ A G N Q++ + VGT E + G+ Sbjct: 649 RILRPLLVVQNLHKIEAFKGGNCTFQSL-LDKGIIEFVGTEEEEDCSTAWGIKFLLSGVD 707 Query: 715 ---------------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + G++ + + + + + + I R Sbjct: 708 GKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQ-QAIGFPTTNPNIRV 766 Query: 760 NQNTCINQMPCVSLGEPVER------GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 + + P L V GD EL GQN VA GYN E Sbjct: 767 DTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQE 826 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD-------IPNVGEAALSKLD 866 DS++++ ++ F + HI+ + +L + D IP+ + LD Sbjct: 827 DSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKI-GRVDSLD 885 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 + G +IGA + GDI++G+ G D S+++ + G Sbjct: 886 DDGFPFIGANLQSGDIVIGRCAESGP----------------------DHSIKLKHTERG 923 Query: 927 TVIDVQVFTRDGVE 940 V V + + D + Sbjct: 924 MVQKVVLSSNDEGK 937 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 85/451 (18%), Positives = 160/451 (35%), Gaps = 85/451 (18%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 N + + + D + ++ +LE + + + ++ + Sbjct: 808 YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDD 867 Query: 978 VLVAGGVE--AEKLDKLPRDRWLELGLTDEEKQNQLEQLAE--QYDELKHEFEKKLEAKR 1033 + G + ++D L D + +G + + + AE +K + ++ ++ Sbjct: 868 NVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQK 927 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 ++ D+ V L R GDK + HG KGV+ + E+ P+ G Sbjct: 928 VVLSSNDE----GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIV 983 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 DIV+NP PSR GQ+LE LG G A V + + RA Sbjct: 984 PDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRW 1043 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + V++G ++ L Sbjct: 1044 GNER----------------------------VYNGRTGEMVRSL--------------- 1060 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 + +G + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEM Sbjct: 1061 -----------IFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1109 Query: 1274 EVWALEAYGAAYTLQEMLTVKSD----DVNGRTK-------------------MYKNIVD 1310 E L A+GA+ L E L SD + + K + Sbjct: 1110 ERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCES 1169 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + ++ +P +L +E+ S+GI+++ E Sbjct: 1170 VDEIVKVNVPYGAKLLCQELFSMGISLKFET 1200 >UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=Solanum bulbocastanum RepID=Q17U53_SOLBU Length = 1018 Score = 339 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 164/1066 (15%), Positives = 325/1066 (30%), Gaps = 260/1066 (24%) Query: 13 KDFGKRPQ--VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG------ 64 ++F K+ + ++S Q+DS+ FI YG++ F SV I G Sbjct: 69 RNFCKKASAGFFEKYGVISHQIDSYNDFIR------YGIQRVFDSVGEIHVEPGYDPSKK 122 Query: 65 ------NSELQYVSYRLGEPVFD-----------------VQECQIRGVTYSAPLRVKLR 101 ++ +++ L P F + +++ +TYSA R Sbjct: 123 GEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLNLWPRHARLQNMTYSA------R 176 Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 +++ + V+ K + G E+ + DK Sbjct: 177 IIVETHVFTKKLVRSDKFKT------------------GVEQFV--------------DK 204 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 + ++ RI P + + Sbjct: 205 ECVMEDKRDVFIGRI----------------------------PVMVNSELCWMSGADRP 236 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 D F+ + I ++ + E++ + + V G + +++ E Sbjct: 237 DCEFDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLK 296 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 + I+ + ++ A+ I L +++ E+ + + + I +D Sbjct: 297 HEHIKGEAKALSVYFFAEMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDA 356 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 D + AL + R+++ + P +E+ E + F Sbjct: 357 DKN--------CEDFRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLFPN--------- 399 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE 461 + ++K L+ G+ +VD+ D N+R+ GE+ E Sbjct: 400 -------------LSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLE 446 Query: 462 NQFRVGLVRVERAVKERLSL---GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ----- 513 + RV + ER + + L GD + ++A I+ + F + Sbjct: 447 RELRVHVKHAERRMVKALQRDLCGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRM 506 Query: 514 --------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 + + NPL R+ +T + R HP+H+G+VC + TP+ Sbjct: 507 ERVSGVVATLRRTNPLQMTADLRK----TRQQVTYTGKVGDARYPHPSHWGKVCFLSTPD 562 Query: 566 GPNIGLINSLSVYAQTNE---YGFLETPYRKVTDGVVTDEIHYLSAIE----EGNYVIAQ 618 G N GL+ +L+ + LET +R +V D L + +G++V Sbjct: 563 GENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVC 622 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSL-------FSRDQVDYMDVSTQQVVSVGASLIPFL 671 +S L FV L R + E + ++ + Sbjct: 623 EDSAL-----FVSKLRRQRRRNEVPHQLAHTLAIPPGICYLLPTHVPVTLTEAQVEVKRD 677 Query: 672 EHDDANRALMGANMQRQAVPTL-------------------------------------R 694 E D R + ++ R P L Sbjct: 678 EQQDEVR--IFSDAGRIMRPLLVVSNLKNIKALKDGMKGGDYGFQTLLDKGIIELIGPEE 735 Query: 695 ADKPLVGTGMERAVAVDS-------------GVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 + G+E + D + G++ + + + + E Sbjct: 736 EEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEK 795 Query: 742 YPGEAGIDIYNLTKYTRSNQNT---CINQMPCVSLGEPVERGDV---LADGPSTDLGELA 795 + I + R + NT Q P G E Sbjct: 796 HSQ-QAIGFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQKGMLSRPEYY 854 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADI 854 GQ VA GYN EDS++++ ++ F + H++ +G + D Sbjct: 855 NGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDS 914 Query: 855 PNVGE-----AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 N G+ + LD+ G +IGA + GDI++GK G Sbjct: 915 VNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKYAESGA----------------- 957 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 D S+++ + G V V + + + K+ + + ++ K Sbjct: 958 -----DHSVKMKHTERGMVQKV-LLSANDDGKNFAVVSLRQVYEKS 997 >UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax=Eimeriorina RepID=RPOB_EIMTE Length = 1059 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 176/830 (21%), Positives = 332/830 (40%), Gaps = 36/830 (4%) Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 I Y G L + + T + + T ++ + +I++ Sbjct: 32 SIKNYLGDKLYLYYKKNKYTIYILSDFLFFKTTNLTSNITDTVQEFNSKILIFLPLKIKN 91 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 K + L GE + IE N + K I+ + K I+ + Sbjct: 92 LKNNKYKIIYYLLGEIPKYTIEKNLIINGLKKTFISKLMFNYIGIFFNKFIKNNNNILYA 151 Query: 295 KVVAKD-----YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 K++ D + E N DL+ L G + + + Y+ + Sbjct: 152 KIIFNDKFIINIVLEENKCYCIFNNY--KYDLICFLYLLGISMQDIFIFSRYNKSFYLKK 209 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L P+ + + + S F NL F + Y + K N Sbjct: 210 LLLTLPSLNINNIINYNIFKY-----------LSFFFNLSFKLNTYYIFNKVLNKNNSLY 258 Query: 410 -LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + S L D I+++ L+DI+ K + D+D L R I ++G NQ+ L Sbjct: 259 SYIKNFSNSNNLIALDFINILDILLDIKYNKKNITDLDLLEYRSIFTLGNYFTNQYSFYL 318 Query: 469 VRVERAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITH 526 + + + + +L+ + +KE+ + L Q+++Q N SEI H Sbjct: 319 KKFSNILHNDIFKCIKNLEKYKLNTNSFKSKLYFNLKEYLTVNPLVQYLEQINSFSEIIH 378 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 K R++ ++ + ++R+++ G +C I+T EG N GL+ S + + + Sbjct: 379 KNRVTNYN----SKLKQNLQIRNINLNQLGSLCLIDTTEGINCGLVISFTKNIKIEKRNN 434 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 + PY V + + I ++++ + Y++ N L + F +K L + Sbjct: 435 FQFPYLPVLNIKTKNFITFINSFLQQTYIVLFNNYYLRKNKLF-NFFNLSLNKNSFKLKN 493 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 + + + + S +LIPF+ ++D R LMGA MQ Q VP L+ + ++ TG E+ Sbjct: 494 ISIQNMIYIKPMDMFSFAENLIPFIFYNDPARVLMGAKMQSQIVPILKNKRSIIITGYEK 553 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 + + + A + G+V YV + +I+I+ + Y L KY RSN T ++ Sbjct: 554 NLLNSTNLILKAYQEGIVVYVSSYKIIIRDLYNRK-------ITYFLDKYKRSNHFTILH 606 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 P V GE + G +L E G N+ V++ + GYNFED+I+++++++ Sbjct: 607 SKPNVWQGERIFCGQILTSTQDILFSEYIGGNNLLVSYGNFFGYNFEDAIVLNKKIIYSQ 666 Query: 827 RFTTIHIQELACVSRD-TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 FT++H + + K E T ++P + LD GI+ G++V DILV Sbjct: 667 LFTSLHFKVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDFFGIIKEGSKVLNNDILVS 726 Query: 886 KVTPKG-ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK-DK 943 K+ L P L+ +FG++ ++KD S+ V G SG ++ ++F+ K Sbjct: 727 KIFITNINISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSGRIVKTELFSYSSKIKSYL 786 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + + + + + G I +L + + +P Sbjct: 787 GYYLKCRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNTGIIP 836 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 114/472 (24%), Positives = 194/472 (41%), Gaps = 52/472 (11%) Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS------LRVPNGVSGT 927 G + G IL ++ LL + + +D+ + S Sbjct: 614 GERIFCGQILTS-TQDILFSEYIGGNNLLVSYGNFFGYNFEDAIVLNKKIIYSQLFTSLH 672 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG-VEA 986 ++ + I + K + I++ G +LV+ + Sbjct: 673 FKVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDFFGIIKEGSKVLNNDILVSKIFITN 732 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + LP + + E K + + + + + +L + KI G Sbjct: 733 INISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSGRIVKTELFSYSSKI----KSYLGY 788 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 +VY+ +R + GDK+ GR+GNKG+I+ I P D+PY G DI+ + LG+PSR Sbjct: 789 YLKCRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNTGIIPDIISDSLGIPSR 848 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MNIGQ+ E G++ + ++ ++ + + + Sbjct: 849 MNIGQLFENLFGLSCYFLNKRLCISNTFNLPKVYIKTILYNYINNIKEKSGN-------- 900 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 L + + + G+I L DGR G + P Sbjct: 901 --------------------------------LWIYNSYSPGKILLRDGRQGYKLSEPSF 928 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G KL H++ DK+H R+ G Y+ + QQP+ G+ + GGQRFGEME+WA+EAYG++Y Sbjct: 929 LGISKYSKLIHMIKDKIHYRTIGPYTELMQQPVKGRNKKGGQRFGEMEIWAIEAYGSSYN 988 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 L+E+L KSDD+ RT + N+ + ESF L++EI S+ +NIE Sbjct: 989 LRELLNYKSDDIIARTSLLSNLDNNIILDNITTTESFRTLIREIHSMNLNIE 1040 >UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG45_ENTDI Length = 1170 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 135/841 (16%), Positives = 266/841 (31%), Gaps = 121/841 (14%) Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE-------VPVEYIAGKVVAKDY 301 + F I+ + KV + + + + D +K + + + DY Sbjct: 169 QGGYFIIKGSEKVVIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDY 228 Query: 302 IDESTGE------LICAANMELSLDLLAKLSQSGHKRIETLFT------NDLDHGPYISE 349 ++ + M+ + ++ G++ + + ND + ++ Sbjct: 229 PKLDKSRLKIKVPVLTLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTT 288 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 ++ + A + GE + E + E + + + L G K + L Sbjct: 289 AIQANECTTTEDARRWL------GEHSKKTNKEGVIEIVSENIQK--LQRDGTEKLKKDL 340 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 L + + + + + GK DD DHL +R+ G + F+ L Sbjct: 341 LPHIGTDNFESKAQFLGYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLK 400 Query: 470 RVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFM 515 R+ + + +L TL ++ I++ + G+ +Q + Sbjct: 401 RMMKTARAQLQKQLSSNKTLEYAKPLSFPTITSDFTKALGTGNWPQPGGKESRHGVAQVL 460 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 + S + + R+IS+ G +R + R +H T +G +CP ETPEG + GL+ L Sbjct: 461 SRLTFTSALAYLRKISSPVEG----KRKTQKPRQLHNTQWGYICPAETPEGESCGLVKML 516 Query: 576 SVYAQTNEYGFLETP--YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE----EGHF 629 S+ AQ E ++ D I+ + + N N + Sbjct: 517 SLMAQITVALQDEQVDEIKEALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKL 576 Query: 630 VEDLVTCRSKGESSLFSR--DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 +E+L R + V ++ + L N N+++ Sbjct: 577 LEELKNYRKNSTKGKVKKVMSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQ 636 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI------------- 734 + L + G E+ G+++YVDA + Sbjct: 637 SQITELCSRLDNESNGTEKTKF-----WNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNT 691 Query: 735 ------KVNEDEMYPG-EAGI--DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 E++P G+ I + +S +NT M ++G + D Sbjct: 692 EGGSSKNYTHCEIHPALVMGVLGSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLD 751 Query: 786 GPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 G + G N VA ++GYN EDS+++++ + Sbjct: 752 SLGHVLFYPQKPLVSTRAAEYVKFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGL 811 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGE-----AALSKLDESGIVYIGAEVTGGDI 882 F ++ + + ++ ++ N E + K+D GI+ G +V DI Sbjct: 812 FRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEKVDVDGILAPGTKVKPDDI 871 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 LV + K +KD SLR +G V V V K Sbjct: 872 LV------------------AGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKY 913 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 R + K S Q G+ R + + + P + + Sbjct: 914 IRVKMRSIRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTV 973 Query: 1003 T 1003 Sbjct: 974 G 974 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 96/437 (21%), Positives = 159/437 (36%), Gaps = 84/437 (19%) Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 G++ + + A + E +L K + + + + + Sbjct: 801 MMNQGSIDRGLFRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEK----VDV 856 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 G+ A P D + ++ K + L + E + + Sbjct: 857 DGILAPGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVV-----------T 905 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 A K ++V + R Q GDK + RHG KG + EDMP+ G DI++NP Sbjct: 906 NAQSGTKYIRVKMRSIRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPH 965 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 +PSRM +GQ++E LG K+ A++ Q Sbjct: 966 AIPSRMTVGQLVECLLG--------KVGALVGDVQS------------------------ 993 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 TP +I E L G L+ G TG + Sbjct: 994 ---------------------GTPFQKDITVDKIGERLHKLKYQRRGYEALFSGHTGRKL 1032 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + V +G Y +L HLVDDK+H R+TG Y+ +T+QPL G+++ GG R GEME + ++ Sbjct: 1033 DSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISH 1092 Query: 1282 GAAYTLQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNV 1325 G + L+E L + SD D H + +P + + Sbjct: 1093 GVSSLLKERLFLASDKYQIYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACKL 1152 Query: 1326 LLKEIRSLGINIELEDE 1342 L +E+ S+ + + E Sbjct: 1153 LFQELMSMAVCPRIYTE 1169 >UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEV5_CHLKE Length = 1312 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 170/530 (32%), Positives = 244/530 (46%), Gaps = 53/530 (10%) Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 I++S ++ + + + + IT PN+ E ++ + I+ G+ Sbjct: 811 IILSLSQTKKQKSSIKKEYSYSLDNYQRTNQSTCIT-QRPNLKEGDWVQITD--IIADGS 867 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD--SSLRVPNGVSGTVIDVQV 933 GG + +GK AI KD +SL + V Sbjct: 868 ASAGGKLALGK-NVLIAYVPWEGYNFEDAILISDKLLEKDVFTSLHIDYYE---VEVKNT 923 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE---AEKLD 990 +K LEI+ + ++E G + LV Sbjct: 924 QYGLETITNKVPLEIDASSKDILQLQRLNSNGLIEIGSWVEEGDYLVGKISPLSPKGPSI 983 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 ++ + + + L + ++ + + V Sbjct: 984 YKQYEKLYNVIWQRDNPTFKNTSLRVPKGVEGFVLDVQILPPKETDVLPL-APKNAILRV 1042 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 ++ L KR IQ GDKMAGRHGNKG+ISKI P +DMPY +G P+DIVLNPLGVPSRMN+G Sbjct: 1043 RIALLQKRNIQVGDKMAGRHGNKGIISKILPCQDMPYLPDGNPIDIVLNPLGVPSRMNVG 1102 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 QILE+ LG A K + + L + GA+ + + S + + Sbjct: 1103 QILESLLGFAGKYLHESYKIELFDE--------------KFGAEASRSLVYSKLYEASLK 1148 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 L + G+I+L+DGRTGE F++PVTVGY Sbjct: 1149 TANP-------------------------WLFEPQHPGKIKLFDGRTGESFDQPVTVGYA 1183 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 YMLKL HLVDDK+HAR+TG YS VTQQP+ G+A+ GGQR GEMEVWAL+AYGAAYTLQE+ Sbjct: 1184 YMLKLIHLVDDKIHARATGPYSAVTQQPVRGRARNGGQRLGEMEVWALQAYGAAYTLQEL 1243 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LT+KSDD++GR + I + G PESF VLL+E++SL N+++ Sbjct: 1244 LTIKSDDIDGRKEAVFRIYTNRSL-KFGQPESFKVLLRELQSLCFNLQIY 1292 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 162/608 (26%), Positives = 265/608 (43%), Gaps = 34/608 (5%) Query: 154 GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF---EFDPKDNLFVRIDRRRKLPATIIL 210 G+F K K+ K ++ I+ W+ F E D K L + +++ Sbjct: 50 GLFRSLKKKKSFIFRKSIHKLEIV-LFPEWIQFKKPELDSKKALHFGKTYGSYIYIPVLV 108 Query: 211 RALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRIT 270 + + ++ + + + + +P + + N +Y+ T Sbjct: 109 KFSGWKKNKLEWILLGFLPLLTKQGHFIINGIPRVVLHQMI-----RNPGIYILSKDSKT 163 Query: 271 ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES-TGELICAANMELSLDLLAKLSQSG 329 ++ + I + ++ + ++ + + + A ++ L S Sbjct: 164 RVATIRIVPEQGSWINITIDKKYRIWITTRFLRKKISVLIFLQALGFSLSEIYKNLGYSE 223 Query: 330 HKRIETLFTNDLDHGPYISETLRVDPT----NDRLSALVEIYRMMRPGEPPTRE------ 379 ++ + D L + A +Y TRE Sbjct: 224 LLQVSFVKELQPDEKTRNDRILIRANLWRHPVTQKQAQRYLYAHYLEYSSQTREQVVTDQ 283 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 A+ F ++ ++ +GR +F L L+ DDI K + + + Sbjct: 284 TAQEFFLKNVWNYKNRNIGYLGRKQFREKLGSTLSITETWLTADDISLATKASLKLLCNE 343 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL-----------GDLDTLM 488 DDID+L N+R+R GE ++ GL E + + S + T Sbjct: 344 QVADDIDNLDNKRVRGCGEFLYDELNSGLQEFEHVLNRKFSNISISSKNSIFGNECATFW 403 Query: 489 PQD-MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 + + +K IS + K FF LSQFMD+ NPL+E THKRR++ LGPGG++ ++ ++ Sbjct: 404 RFNRSLLSKYISKSWKNFFTGGTLSQFMDETNPLAETTHKRRLTVLGPGGVSGKQTTIQI 463 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HY 605 R +HPT+YGR+CPIETPEG N GL+NS +VY Q N G LETP+ +V G + E+ HY Sbjct: 464 RGIHPTYYGRLCPIETPEGQNAGLVNSFTVYTQRNSQGILETPFFEVYKGQIQKELKAHY 523 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 LS E V+A A+ L + + R + +Q+ + Q++SV Sbjct: 524 LSPQTESYLVLAPADICLSPWNQLPKTDLPVRKNWKFEYTIWNQISKQSIGLLQMISVAT 583 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 SLIPFLEHDDANRALMG+NMQRQAVP LR + LV TG+E V D + + G + Sbjct: 584 SLIPFLEHDDANRALMGSNMQRQAVPLLRPENALVSTGLETRVISDVNHGIRSSKTGYIT 643 Query: 726 YVDASRIV 733 V +++I Sbjct: 644 AVSSTKIQ 651 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 162/330 (49%), Gaps = 16/330 (4%) Query: 730 SRIVIKVNEDEMYPGEAGID-IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I++ +++ + + Y+L Y R+NQ+TCI Q P + G+ V+ D++ADG + Sbjct: 809 KNIILSLSQTKKQKSSIKKEYSYSLDNYQRTNQSTCITQRPNLKEGDWVQITDIIADGSA 868 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 + G+LALG+N+ +A++PW GYNFED+IL+S++++++D FT++HI ++T+ G E Sbjct: 869 SAGGKLALGKNVLIAYVPWEGYNFEDAILISDKLLEKDVFTSLHIDYYEVEVKNTQYGLE 928 Query: 849 EITADIPNVGEAA------LSKLDESGIVYIGAEVTGGDILVGKV---TPKGETQLTPEE 899 IT +P +A+ L +L+ +G++ IG+ V GD LVGK+ +PKG + E Sbjct: 929 TITNKVPLEIDASSKDILQLQRLNSNGLIEIGSWVEEGDYLVGKISPLSPKGPSIYKQYE 988 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK----DKRALEIEEMQLKQ 955 KL I+ K++SLRVP GV G V+DVQ+ + K A+ + L Q Sbjct: 989 KLYNVIWQRDNPTFKNTSLRVPKGVEGFVLDVQILPPKETDVLPLAPKNAILRVRIALLQ 1048 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 + + G I +L + D P D L L + N + L Sbjct: 1049 KRNIQVGDKMAGRHGNKGIISKILPCQDMPY-LPDGNPIDIVLN-PLGVPSRMNVGQILE 1106 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 + + + G + + Sbjct: 1107 SLLGFAGKYLHESYKIELFDEKFGAEASRS 1136 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 124/304 (40%), Gaps = 19/304 (6%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 + + R+ + VL +P L+ IQ +SFQ F++ + +F +F + Sbjct: 16 KDQFNRRFYYNDLYVL-IPDLIDIQRNSFQNFLQCGLFRSLKKKKSF--IFRKSIHKLEI 72 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 L + +P D ++ G TY + + + + K K + + +G Sbjct: 73 VLFPEWIQFKKPELDSKKALHFGKTYGSYIYIPV-------LVKFSGWKKNKLEWILLGF 125 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 +PL+T G F+ING RV++ Q+ R+PG++ S KT + RI+P +GSW++ Sbjct: 126 LPLLTKQGHFIINGIPRVVLHQMIRNPGIYILSKDSKT-----RVATIRIVPEQGSWINI 180 Query: 187 EFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 D K +++ R+K+ I L+AL ++ +I + ++ EL P+ Sbjct: 181 TIDKKYRIWITTRFLRKKISVLIFLQALGFSLSEIYKNLGYSELLQVS---FVKELQPDE 237 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + V + + + LE +V + A + K+ + Sbjct: 238 KTRNDRILIRANLWRHPVTQKQAQRYLYAHYLEYSSQTREQVVTDQTAQEFFLKNVWNYK 297 Query: 306 TGEL 309 + Sbjct: 298 NRNI 301 >UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=Fungi RepID=Q2I5U8_9FUNG Length = 1080 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 137/818 (16%), Positives = 253/818 (30%), Gaps = 147/818 (17%) Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + + FR ++ + V + L IN+ I+ ++ Sbjct: 1 KKRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALA 60 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR++ + RE + R +H TH Sbjct: 61 TGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNT----PIGREGKLAKPRQLHNTH 116 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G VCP ETPEG GL+ +L++ + + G P + T+ + +S G Sbjct: 117 WGMVCPAETPEGQACGLVKNLALMSIISV-GSASEPIHEFLSEWTTENLEEISPSTIGPN 175 Query: 615 VIAQANS----NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 N E V+ L T R + D + L + Sbjct: 176 TKVFVNGAWIGIHREPDSLVKTLKTLRRATDIDSEVSVVHDIREN----------ELRIY 225 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 + R L N +Q V + + E A+ G+V+Y+D Sbjct: 226 TDPGRICRPLFVVNENQQLV-LKKEHILKLSEEDEDAI----WGWEKLLINGIVEYLDTE 280 Query: 731 R---IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 ++I ++ D++ + R+ + + G+ + P Sbjct: 281 EEETVMISMSPDDLAEARGALIFDKSLDRDRTAR---LKAR---KPGDYCKTWTHCEIHP 334 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + LG + + +P+ +N S + + + +++ Sbjct: 335 AMILG-------ICASIIPFPDHNQ--SPRNTYQSAMGKQAMGVYLTNFQLRMDTLANIL 385 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 P V + L + G+ + + I Sbjct: 386 YYPQK--PLVTTRNMQYLRFRELPA------------GQNAIVAIAAYSGYNQEDSLIMS 431 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 + A D L V + +E+ +R ++L+Q + L Sbjct: 432 QSAI---DRGLFRSIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQ------GSYEKL 482 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 E F + + K LP D E + Q + E Sbjct: 483 EDDGFVAPGTRVNGDDIIIGKTAPLPMDH--------SELGTRTTQTKKDVSTGLKSSEN 534 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + T GD K VK+ + R Q GDK A RHG KG + EDMP+ Sbjct: 535 GIVDHVMVTTNGD-----GYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTYRQEDMPF 589 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 G D+++NP +PSRM IG ++E LG + G + +A V ++ + ++ Sbjct: 590 TAEGLTPDLIINPHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTDVTVQQISDLLRE 649 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + + Sbjct: 650 CGYQQRGFEVMYNG--------------------------------------------HT 665 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 G+ + + +G Y +L H+VDDK+H Sbjct: 666 GK----------KLSAQIFLGPTYYQRLKHMVDDKIHC 693 Score = 53.7 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 19/26 (73%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRF 1270 +RS G ++T+QP+ G+++ GG RF Sbjct: 1055 SRSRGPLQILTRQPVEGRSRDGGLRF 1080 >UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SSM5_METLZ Length = 637 Score = 335 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 117/475 (24%), Positives = 182/475 (38%), Gaps = 59/475 (12%) Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR----A 945 G + AI + +++D+ + V V F E+ + Sbjct: 197 IGSDNRPQGQNFCVAIISYEGYNIEDALIFNKASVERGVGRSHFFRTYEGEERRYPGGQV 256 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP--RDRWLELGLT 1003 IE + L+ V+ V K + EL Sbjct: 257 DRIELPEEDVQGSHGIGSYANLDVDGIINPETVVNEKDVLIGKTSPPRFLEEPTGELIAV 316 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 ++ + + + + + + E ++VKV R + G Sbjct: 317 EKRRDTSITMRSNETGIVDTVIITESENSS--------------RLVKVRTRDLRIPEIG 362 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DK A RHG KGV I P E+MP+ G D+V+NP VPSRM IG +LE G A Sbjct: 363 DKFASRHGQKGVCGLITPQENMPFTAAGIAPDLVINPHAVPSRMTIGHMLEMIGGKAGAL 422 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 G ++NA ++ +V K+ + L D D+ + + Sbjct: 423 EGSRVNATSFRKTQVEKIFDSSFAQNRLLNDKEIGKDVKSSTL----------------- 465 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 +E ++ L +G+ +YDG TG +F+ + +G +Y KL H+V KM Sbjct: 466 ------TREQVLRHQLAEAGFAHTGREVMYDGITGRRFQADIYIGVIYYQKLYHMVSTKM 519 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVN 1299 HARS G ++T+QP G+A+ GG RFGEME + +GAA L+E L +SD V Sbjct: 520 HARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMALKERLLDESDAVKQYVC 579 Query: 1300 GRTKM------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R M E M +F +LL E++S+GI L E Sbjct: 580 ARCGMVAMYDAKQKMTRCLACGAETDIYEVEMSYAFKLLLDEMKSMGIAPRLRLE 634 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 75/431 (17%), Positives = 136/431 (31%), Gaps = 71/431 (16%) Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 +V +D+ F + R G S + Y D S Sbjct: 9 FVDGALIGKVDDAYGFTRNFRQMRRSGHVSTEV--NISYKDYS----------------- 49 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV--TAVAKRGGVVQYVDASR 731 N ++ + R P + + + E V SG G ++++DA Sbjct: 50 ---NEIVINTDRGRARRPLIVVENGVPAVTPEDIEIVRSGAEDFMALVSQGKIEFIDAEE 106 Query: 732 IVIKV---NEDEMYPGEAGIDI------------YNLTKYTRSNQNTCINQMPCVSLG-- 774 E ++ P ++I ++ S + T M +LG Sbjct: 107 EDDLFIAVQESDLTPEHTHLEIDPSLILGIGAAHVPFPEHNASPRVTMGAGMIKQALGFA 166 Query: 775 ------EPVERGDVL--ADGPS--TDLGEL------ALGQNMRVAFMPWNGYNFEDSILV 818 P RG +L A P T EL GQN VA + + GYN ED+++ Sbjct: 167 QANMKLRPDTRGHMLHYAQVPMVHTQAAELIGSDNRPQGQNFCVAIISYEGYNIEDALIF 226 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV------GEAALSKLDESGIVY 872 ++ V+ + + R G + ++P G + + LD GI+ Sbjct: 227 NKASVERGVGRSHFFRTYEGEERRYPGGQVD-RIELPEEDVQGSHGIGSYANLDVDGIIN 285 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 V D+L+GK +P + E + +D+S+ + + +G V V Sbjct: 286 PETVVNEKDVLIGKTSPPRFLEEPTGELI-------AVEKRRDTSITMRSNETGIVDTVI 338 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + + + + + + K S Q GL + + A L Sbjct: 339 ITESENSSRLVKVRTRDLRIPEIGDKFASRHGQKGVCGLITPQENMPFTAAGIAPDLVIN 398 Query: 993 PRDRWLELGLT 1003 P + + Sbjct: 399 PHAVPSRMTIG 409 >UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SHS2_RICCO Length = 1139 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 91/431 (21%), Positives = 162/431 (37%), Gaps = 79/431 (18%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G I ++ + + + A + + +++ ++L+ + ++ + Sbjct: 768 GRCIVMKKYPAIRQKYENGASDRILRPDRTVERE-----RVLDYDGLAAPGEIIKPSDIY 822 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 +K + ++ E + + L+ + E + ++ + Sbjct: 823 VKKECPIDTMGPVKSSAALENIKYRPSPLSYKGPEGESPVIDRVALSSDR---------N 873 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 +KV + RR + GDK + RHG KGV I ED P+ E G D+++NP G PS Sbjct: 874 NNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPS 933 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM +G+++E G A G Sbjct: 934 RMTVGKMIELLGGKAGVSCGR--------------------------------------- 954 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 G P I E L +G+ +Y G TG + + Sbjct: 955 ----------FHYGSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYI 1004 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +G +Y KL H+V DKMHAR G ++T+QP G+A+ GG R GEME L AYGA+ Sbjct: 1005 FMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1064 Query: 1286 TLQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKE 1329 + E L + SD + + +G++ +P + +L++E Sbjct: 1065 LIFERLMISSDPFEVQVCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQE 1124 Query: 1330 IRSLGINIELE 1340 ++S+ I L+ Sbjct: 1125 LQSMNIVPRLK 1135 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 116/800 (14%), Positives = 247/800 (30%), Gaps = 87/800 (10%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I+ KV + + + R I +K V A K +++ L Sbjct: 181 GYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLC 240 Query: 311 CAA--NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTNDRLSALVE 365 + ++ + + + + D + + ++ + AL Sbjct: 241 LNQFVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEY 300 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + A ++ ++F L+ V K N + Sbjct: 301 LDGK--------ENRALTILRDVF-------LANVPVHKNNFRP-----------KCLYV 334 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-----S 480 +++++++ K +DD D++GN+R+ G++ F + V+ + Sbjct: 335 AVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVLTK 394 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQ--LSQF-MDQNNPLSEITHKRRISALG--- 534 I I+ ++ + + +F M + + I++LG Sbjct: 395 QNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGMMT 454 Query: 535 --PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + R R + P+ +G +CP +TPEG GL+ +L++ E P Sbjct: 455 RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDE-EGPLI 513 Query: 593 KVTDGVVTDEIHYLSAIEE---GNYVIAQAN---SNLDEEGHFVEDLVTCRSKGESSLFS 646 + + +++ LS E ++++ +FV + R G+ F Sbjct: 514 SLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQYFVNSMRKLRRAGKIGEFV 573 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 V+ + + S G + L D + + + ++ +R + G+ Sbjct: 574 SVFVNEKQRAV-YLASDGGRVCRPLVIADRGVSRIKEHHMKELRDGVRTFDDFLRDGLIE 632 Query: 707 AVAV-DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQN 762 + V + VA G + E+ P + + +S +N Sbjct: 633 YLDVNEENNALVALYEG--------EATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRN 684 Query: 763 TCINQMPCVSLGEPVERGDVLADG------------------PSTDLGELALGQNMRVAF 804 T M ++G D +L GQN VA Sbjct: 685 TYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 744 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 M ++GY+ ED+I++++ + I +++ + + + G + P+ Sbjct: 745 MSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDRILR-PDRTVERERV 803 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LD G+ G + DI V K P L I + S + P G Sbjct: 804 LDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENIKYRPSPL----SYKGPEGE 859 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 S + V + + + + + + K S Q G + + Sbjct: 860 SPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERG 919 Query: 985 EAEKLDKLPRDRWLELGLTD 1004 L P + + Sbjct: 920 ICPDLIMNPHGFPSRMTVGK 939 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 49/242 (20%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY-SGNSELQYVSY 73 F P+ L V L+ LDSF F+ G++ R+ I S L++ Sbjct: 38 FQLLPEFLKVRGLVKQHLDSFNYFV------NIGIKKIVRANDRIVSTVDPGIYLRFKDV 91 Query: 74 RLGEPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 R+G P C++ TY+AP+ V + + + +++ +V + Sbjct: 92 RIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTR----VEKNDVVI 147 Query: 125 GEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSD 160 G +P+M G FVI GTE+VI+ Q S Sbjct: 148 GRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 207 Query: 161 KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQ 219 K + + V + + K+ +++ +++ +K+P ++++A+ ++Q Sbjct: 208 DKKGNINASVTSSTEATKSK----TIIQMEKEKMYLCLNQFVKKIPIMVVIKAMGMESDQ 263 Query: 220 IL 221 + Sbjct: 264 EV 265 >UniRef50_Q5RM00 DNA-directed RNA polymerase (Fragment) n=26 Tax=Fungi RepID=Q5RM00_9HOMO Length = 898 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 130/725 (17%), Positives = 236/725 (32%), Gaps = 131/725 (18%) Query: 397 LSAVGRMKFNRSLLREEI-------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 L+ R+++ + +L++E+ EGS ++ +L+ + E+DD DH G Sbjct: 108 LNRDKRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFG 167 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + FR+ ++ + V L I + ++ +K Sbjct: 168 KKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLA 227 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR + L RE + R +H TH Sbjct: 228 TGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRCNT----PLGREGKIAKPRQLHNTH 283 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEG 612 +G VCP ETPEG GL+ +L++ A + G + P + + + S Sbjct: 284 WGMVCPAETPEGQACGLVKNLALMAVISV-GSVSGPVIDFLEEWGLETLEENTQSTNLTK 342 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 +V + + V L T R + D + + G L P Sbjct: 343 VFVNGVWLGVCRDPLNMVNTLRTLRRMQDFDSEVSIVRDIREREIRIYSDAGRVLRPLFI 402 Query: 673 HDDANRALMGANM----------QRQAVPTLRADKPLVGTGMERAVAVDSG--------- 713 +D L ++ +R VP +K V G E + G Sbjct: 403 VEDHKLKLKRQHLRWLQEKWRIEERPYVPREERNKEEVSEG-ETVADEEEGRPIMRDERR 461 Query: 714 --------VTAVAKRGGVVQYVDASR---------------------------------- 731 + R GV++ +DA Sbjct: 462 VKRKKKPFTWSSLIRDGVIELLDAEEEETVMICMTPDDLLESRLLRRGLDPRAEADFNPA 521 Query: 732 -------IVIKVNEDEMYPG---EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 I E++P I + +S +NT + M ++G + Sbjct: 522 ARLKPLPIAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 581 Query: 782 VLADGPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 + D + EL GQN VA + ++GYN EDS+++++ + Sbjct: 582 MRQDTMANILYYPQKPLATTRAMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 641 Query: 824 QEDRFTTIHIQELACVSRDTKL----GPEEITADIP-NVGEAALSKLDESGIVYIGAEVT 878 F +++ + + + E+ T D + KL++ G++ G V Sbjct: 642 DRGLFRSLYYRTYMDQEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVR 701 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 G DI++GK P EE R + +D S + + G V V V T Sbjct: 702 GDDIIIGKTAPIP---PDSEELGQRT----RGHTKRDISTPLKSTEQGIVDQVVVTTNAE 754 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 K + + K S Q G+ R + + P Sbjct: 755 GTKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPS 814 Query: 999 ELGLT 1003 + + Sbjct: 815 RMTIG 819 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 70/355 (19%), Positives = 125/355 (35%), Gaps = 72/355 (20%) Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 +L + + AI + +D S+ + + ++ R ++++KR+ I + Sbjct: 611 ELPAGQNAIVAILCYSGYNQED-SVIMNQSSIDRGLFRSLYYRTYMDQEKRSGAIIVDEF 669 Query: 954 KQAKKDLSEELQI-----LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 ++ +D + ++ LE + + K +P D EE Sbjct: 670 EKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPD--------SEELG 721 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + ++ + ++ + +T + K VK+ + R Q GDK A Sbjct: 722 QRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAE----GTKFVKIRVRSTRIPQIGDKFAS 777 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KG I EDMP+ G DI++NP +PSRM IG ++E L A +G++ Sbjct: 778 RHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGNEG 837 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 +A DL+ S V+R +G+ + Sbjct: 838 DATPF-------------------------TDLTVDSVSSVLREKGYQSRGLEVMYHGHT 872 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 G K V +G Y +L H+VDDK+ Sbjct: 873 GRKLQ-----------------------------AQVYLGPTYYQRLKHMVDDKI 898 >UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota RepID=B6KTL0_TOXGO Length = 1388 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 110/502 (21%), Positives = 172/502 (34%), Gaps = 62/502 (12%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLR------VPNGVSGTVIDVQVFT---RDG 938 TP + K R I ++ V+ R P+GV+ V + D Sbjct: 872 TPFHSIPFRHDNKAYRLITPQR-PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDA 930 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + +K ++E K + + + + + L D + Sbjct: 931 MILNKGSMERGAFHGCVYKSKVIDAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFP 990 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-------------DLAPG 1045 +G E+ + K + D LA Sbjct: 991 AIGAKIEKGNTYCRVQTSSSSSSFASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKS 1050 Query: 1046 VLKIVK--VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 LK + + L R+ GDK A RHG KG++S + P EDMP+ E+G DI+ NP G Sbjct: 1051 GLKGCRASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLVPDILFNPHGF 1110 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG ++E+ G AA G +A ++ + G K Sbjct: 1111 PSRMTIGMLIESMAGKAAAVHGAYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERY 1170 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + EE + + + L G LY G G Sbjct: 1171 RTPEEERQAQDEP------------ETPVDYFGKALMRAGYQYYGTEELYSGVYGVPLTA 1218 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + G +Y +L H+V DK R+TG +T QP+ G+ + GG RFGEME AL ++GA Sbjct: 1219 HIFTGLIYYQRLRHMVTDKHQVRATGPVDALTHQPVKGRKRHGGVRFGEMERDALISHGA 1278 Query: 1284 AYTLQEMLTVKSDDVNGRTK-MYKNIVDGNHQME------------------------PG 1318 A LQ+ L SD +I+ + Sbjct: 1279 AALLQDRLLHCSDAHKTFCCPSCGSILTPSAVPNLRGRTAGGKRAVPFCRVCQVPCRLIM 1338 Query: 1319 MPESFNVLLKEIRSLGINIELE 1340 +P F L E+ ++ + I L+ Sbjct: 1339 VPYVFRYLANELAAMNVTIRLK 1360 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 89/306 (29%), Gaps = 36/306 (11%) Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 V + S + + Y ++ + + +M G +++ R + Sbjct: 830 YEYVELKSSAFL-SIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPF--RHDNKAY 886 Query: 765 IN---QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 Q P V + D + G N VA M + G++ ED++++++ Sbjct: 887 RLITPQRPLVRTEDY----------RRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKG 936 Query: 822 VVQEDRFTTIHIQELACV----SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 ++ F + S + ++ G ++ LD G IGA++ Sbjct: 937 SMERGAFHGCVYKSKVIDAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKI 996 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 G+ +V + + A +G + V V + Sbjct: 997 EKGNTYC-RVQTSSSSSSFASNGIQHA---------------YKDGETAYVDGVTFISPP 1040 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 ++ A + + + I + + +++ E + Sbjct: 1041 DAAHERLAKSGLKGCRASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLV 1100 Query: 998 LELGLT 1003 ++ Sbjct: 1101 PDILFN 1106 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 34/212 (16%) Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 A G +L S D + + KKL ++ GK + +D + + Sbjct: 375 YEAAGTYVIRHFVLPHLSSWSE--KFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLP 432 Query: 457 GEMAENQFRVGLVRVERAVK------ERLSLGDLD-------TLMPQDMINAK---PISA 500 G++ + + L ++ R+ + + D+ + I+ Sbjct: 433 GQILASVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFDLATDRCCPEIAQ 492 Query: 501 AVKEFFGSSQ-------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 + F + + D+ N ++H R A+ G V Sbjct: 493 KLSYFMATGNIRTTQLDLQQLSGWTVTADRLNVHRFLSHFR---AVHRGQFFTTMKTTSV 549 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 R + +G +CP+ TP+G GL+ L+ A Sbjct: 550 RKLLGETWGFLCPVHTPDGAPCGLLLHLTQSA 581 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 62/179 (34%) Query: 31 QLDSFQKFIEQDPEGQYGLEAAFR----------SVFPIQSYSGNSELQYVSYRLGEP-V 79 + SF F+E + P S + +L S +G P Sbjct: 63 HVRSFDSFLEVYLQEMVKDLPVVYVDPSYDPDKHEANPFYSPTDYIKLAISSVSIGAPVR 122 Query: 80 FD--------------------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 FD + C+ +TY APL+V + + Sbjct: 123 FDAAGARLQPGVGGSGDDQLLLPKHCREAHITYGAPLKVSF-------VRSDRRDGAALK 175 Query: 120 QEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPG 154 +EV +G PLM + G F+ING ERVI + + Sbjct: 176 KEVVVGMAPLMVRSKLCSTRGMSPAELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTN 234 >UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=281 Tax=cellular organisms RepID=RPC2_HUMAN Length = 1133 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 123/828 (14%), Positives = 254/828 (30%), Gaps = 96/828 (11%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + + I ++ L+ E+L + + G V + R Sbjct: 163 LDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGR 222 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 Y+ +++D + A +E +++ + + + F L Sbjct: 223 F-----YLRHNTLSEDIPI---VIIFKAMGVESDQEIVQMIG--TEEHVMAAFGPSL--- 269 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 E + ++ AL I +R ++ E L+ V + Sbjct: 270 ----EECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKE 325 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 FN +++++I + G +VDD D+ GN+R+ G++ F Sbjct: 326 FNFR-----------AKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLF 373 Query: 465 RVGLVRVERAVKE---------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF- 514 + +K+ R + D+ M QD I ++A G+ L +F Sbjct: 374 EDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST---GNWSLKRFK 430 Query: 515 MDQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 MD+ ++ ISALG + R R + P+ +G +CP +TPEG Sbjct: 431 MDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEAC 490 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI--AQANSNL---- 623 GL+ +L++ + P K+ + ++++ L E + N N+ Sbjct: 491 GLVKNLALMTHITT-DMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVI 549 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 + V R G + F + D G P++ A+ Sbjct: 550 RDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNK 609 Query: 684 NMQRQA----------------VPTLRADKPLVGTGMERAVAVDSGV------TAVAKRG 721 +M+ A + + E + D+ T + Sbjct: 610 HMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCA 669 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G++ Y ++ + M G+ + + R + + P +P+ + Sbjct: 670 GLIPYPHHNQSPRNTYQCAM--GKQAMGTIGYNQRNRIDTLMYLLAYPQ----KPMVKTK 723 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 + + +L GQN VA M ++GY+ ED++++++ + + + C + Sbjct: 724 TI---ELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 780 Query: 842 DTKLGPEEITADI-----PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 + LD GI G +V +LV K P Sbjct: 781 RYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 + + KD + + V + + + L + + + Sbjct: 841 EGSNV------PQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIG 894 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 K S Q GL + + P + + Sbjct: 895 DKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGK 942 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 92/415 (22%), Positives = 154/415 (37%), Gaps = 70/415 (16%) Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++ KR ++ D + I + VE +++ Sbjct: 773 KNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSM 832 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + + Q QY ++ ++ ++ K+ + ++K+ L Sbjct: 833 PTVTQIPLEGSNVPQ----QPQYKDVPITYKGATDSYIEKVMISSNAED--AFLIKMLLR 886 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 RR + GDK + RHG KGV I P EDMP+ ++G DI++NP Sbjct: 887 QTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH-------------- 932 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 G ++ K+ E++ Sbjct: 933 --GFPSRMTVGKL--------------------------------------IELLAGKAG 952 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + G F G+K ++ E L G+ + G TGE E + G +Y KL Sbjct: 953 VLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKL 1012 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DKMHAR+ G +++T+QP G+++ GG R GEME L YGA+ L E L + S Sbjct: 1013 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISS 1072 Query: 1296 D----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D DV G+ H +P + +L +E++S+ I L+ Sbjct: 1073 DAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127 >UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata RepID=B6KDI3_TOXGO Length = 1332 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 140/997 (14%), Positives = 300/997 (30%), Gaps = 159/997 (15%) Query: 93 SAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRS 152 S V L R VK + ++ + GT R Sbjct: 183 SYNFFVDTELQNILRAPSNRLVKSDVDPSFFI--------EFLNISVGTPRYE------- 227 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR--KLPATIIL 210 G+ + + ++ Y A + +D E+ D + +R +P + Sbjct: 228 EGMILQRLTPRICRTREITYAAPVF------VDAEYSKGDEI-IRRKHVEIGSIPVMLRS 280 Query: 211 RALNYTTEQ------ILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVE 264 R + + + F+ + I ++ L+ E+L + + Sbjct: 281 RVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVET--------D 332 Query: 265 KGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAK 324 + A + + V D ++ A E +++ Sbjct: 333 MKHNVCATVTSATAESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQM 392 Query: 325 LSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG-------EPPT 377 + G T T + + + + AL+ + +RP P Sbjct: 393 IGAGGALADVTGNTAQEAVSLSLQDCH-TENVLTQQQALLWVGSRIRPKMQAKGFFTPVA 451 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 R A S S AV + E + ++++++D + Sbjct: 452 RGALLSERGGAGRSAKSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAAS 511 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL---------------- 481 +DD D+ GN+R+ G++ F R VK++ Sbjct: 512 DPSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRFCTHVKKQADYALSRYHQARGGAGGLG 571 Query: 482 --------GDLDTLMPQDMINAKPISAAVKEFFG-------SSQLSQFMDQNNPLSEITH 526 D +P D+I +A + S +SQ + + + ++ + Sbjct: 572 SRKDEVPYPDCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLGM 631 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 RI++ + R R + P+ +G +CP +TPEG + GL+ +L++ Sbjct: 632 MTRINS----QFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDED 687 Query: 587 LETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH----FVEDLVTCRSKG 640 TP + + ++ +S E + + N L ++++ R G Sbjct: 688 P-TPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLGVHRRPRQLMKNIRLLRRHG 746 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA-LMGANMQRQA---------- 689 E F V+ T + S G L L D+ R L+ +M + Sbjct: 747 EVGEFVSVHVNEAH-KTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLENGEMCFMDLL 805 Query: 690 ------VPTLRADKPLVGTGMERAVAVDSGV------TAVAKRGGVVQYVDASRIVIKVN 737 + + L+ E + ++ T + G++ + + ++ Sbjct: 806 RSSILEWIDVNEENNLLIALREEDITAETTHLEIDPLTLLGVVAGLIAFPNHNQSPRNTY 865 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 + M G+ + ++ R + + V +P+ + L +L G Sbjct: 866 QCAM--GKQAMGAIAYNQFNRCDTLLYL----LVYPQKPLCKSRTL---DLVHFEQLPAG 916 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP-- 855 QN VA M ++GY+ ED+I+++ V ++ + + G + T P Sbjct: 917 QNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPVA 976 Query: 856 ------------------------NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 L++ G+V +G + + V K +P Sbjct: 977 QASGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTN 1036 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 + + L D+SL P+ + R + ++ Sbjct: 1037 TREHVSDPLQL------------DNSLYAPSFARYKTVVPSYVERVVCTDNSDGCRTYKV 1084 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 ++Q + + G + + A + + Sbjct: 1085 MMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAE 1121 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 133/391 (34%), Gaps = 75/391 (19%) Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 + LE R+ +L V K + L Sbjct: 1005 RRFEALEDDGVVRVGELLEEDQVYVHKFSPTNTRE------HVSDPLQLDNSLYAPSFAR 1058 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 + D + KV + R + GDK + RHG KGV+ I P Sbjct: 1059 YKTVVPSYVERVVCTDNSD-----GCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAP 1113 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 ED+P+ E+G D+++NP G ++ K+ Sbjct: 1114 AEDLPFAESGWCPDLIMNPH----------------GFPSRMTVGKMM------------ 1145 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 E++ L+ G F G + E+L Sbjct: 1146 --------------------------ELIAGKSALQVGACQYGTAFGGVGVETLGEILAA 1179 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 SG+ L G TGE + V G +Y KL H+V DK+HAR G L+T+QP G Sbjct: 1180 HGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEG 1239 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KMYKNIVDG 1311 +A+ GG R GEME L AYG++ L E L + SD V G Sbjct: 1240 RAKEGGLRLGEMERDCLVAYGSSALLMERLMLSSDVFEASVCSTCGLMGYEGWCPYCKSG 1299 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 H MP + +L +E+ S+ + L + Sbjct: 1300 KHVAPIRMPYACKLLFQELMSMNVCPRLHIK 1330 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 87/264 (32%), Gaps = 48/264 (18%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 P L+ ++S+ F++ + + + A + + +++++ +G Sbjct: 167 LPAFFAAKGLVHQHIESYNFFVDTELQN---ILRAPSNRLVKSDVDPSFFIEFLNISVGT 223 Query: 78 PVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 P + + C+ R +TY+AP+ V + I+ + V +G IP Sbjct: 224 PRYEEGMILQRLTPRICRTREITYAAPVFVDAEY--------SKGDEIIRRKHVEIGSIP 275 Query: 129 LMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M G F++ GTE+V++ Q S K Sbjct: 276 VMLRSRVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVETDMK- 334 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDL 223 H+ + +A S LPA I+LRA+ T ++I+ + Sbjct: 335 HNVCATVTSAT--AESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQM 392 Query: 224 FFEKVIFEIRDNKLQMELVPERLR 247 E V L+ Sbjct: 393 IGAGGALADVTGNTAQEAVSLSLQ 416 >UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bacillariophyta RepID=B7FQD9_PHATR Length = 1147 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 104/500 (20%), Positives = 177/500 (35%), Gaps = 98/500 (19%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSS----LRVPNGVSGTVIDVQVFTRDGVEKDK 943 TP P+ KL R + V +S ++ +GT V V + G + + Sbjct: 695 TPAHSLPYRPDNKLYR--LQTPQAPVVQTSIHGEYKMDEYPNGTNAVVAVLSYTGFDMED 752 Query: 944 RALEIEEMQLK---------QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL--DKL 992 + + + L EE ++ A + + V+ +K+ L Sbjct: 753 SVILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSSGEDVRMKFSNKVKFDKVMYPSL 812 Query: 993 PRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 D ++G +T+ + + D E+++ + G+D G V Sbjct: 813 QDDGLPQVGDCMTEGDPLYCVVDSISGMDRAAKHKEREIAYVQSVRALGNDSGKGADNKV 872 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 + L R GDK + RHG KGV+S + P EDMP+ E+G D+++NP PSRM IG Sbjct: 873 SITLRFPRNPVLGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRMTIG 932 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 ++E+ G + G + + FS E Sbjct: 933 MMVESMAGKSGALHG-------------------------------NFQNATPFSFHES- 960 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 D E L+ G LY G +G + + +G + Sbjct: 961 ----------------GDKVSVDYFGEQLQAAGYNYYGSEPLYSGVSGCVMQADLYIGVV 1004 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y +L H+V DK R+TG + +T+QP+ G+ + GG R GEME +L ++G A+ LQ+ Sbjct: 1005 YYQRLRHMVLDKYQVRATGPTNELTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLQDR 1064 Query: 1291 LTVKSDDVNGR-TKMYK------------------------------NIVDGNHQMEPGM 1319 L SD + Sbjct: 1065 LLNCSDKHVAYACCRCGDLLMSATERSTVQTTGQSANEAINKPKIRLYCRSAGSVEPIVL 1124 Query: 1320 PESFNVLLKEIRSLGINIEL 1339 P + L+ E+ ++ + + L Sbjct: 1125 PYVYRYLVNELAAMNVKMRL 1144 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 137/1054 (12%), Positives = 285/1054 (27%), Gaps = 222/1054 (21%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP-------- 78 L + +DSF F EQ G++ + F I + + +P Sbjct: 6 LTAPHVDSFDYFWEQGLA--RGVQDIEPAEFNIVDPQ-----KLRDNPIAKPAKAPGERS 58 Query: 79 -VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 +EC+ R + Y+ GEI + TF Sbjct: 59 QKLLPRECRERKLVYA-------------------------------GEI-----SATF- 81 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 + R GV F P R L+ F Sbjct: 82 -------CYRMIQRRNGVDF--------------------PSRPVRLNKTFG-------- 106 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFD 254 +P ++ + + L K + + L+ + Sbjct: 107 -----DMPIMVMSKGCHLEGTTPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRRNHA 161 Query: 255 IEANGKVYVEKGRRIT--ARHIRQLEKDD-VKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 Y +G T +R + + I V Y+ ++ Sbjct: 162 TAIQRSSYKNRGNTYTDLGVAMRCARHNGDMSAITNTVHYLTTGGANLKFV--------- 212 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 A E + + L +T + G + L A + Sbjct: 213 AKKQEFLIPAILILRALSGSESQTELYERIVQGDQSNTFLVARAGLLLQDARARFGSLNT 272 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 P E F L + +G R +L L + ++ +++K Sbjct: 273 PDECLAFIGTR--FRRLSQKAETTSDVEIGHHIIRRFVLIHLPTYRDKL--ECLLLMLRK 328 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD 491 L G VD+ D L N+ I G + + +++ L Sbjct: 329 LYAFAAGDCGVDNADSLQNQEILLPGHLMCTFIKEKFEEFLSSLRLALLSDLRKDFARTS 388 Query: 492 MI-----------------NAKPISAAVKEFFGSSQLSQ--------------FMDQNNP 520 + I V+ F + + ++ N Sbjct: 389 AKLTDAKYWGKMVDRHAGKASGGIGKKVQHFLSTGNIVSTSGLDLMQVSGYTIVAERLNF 448 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L H R ++ G E VR + P +G +CP+ TP+G GL++ L++ ++ Sbjct: 449 LRYCAHFR---SVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLALKSK 505 Query: 581 T-------NEYGFLETPYRKVT-------------DGVVTDEIHYLSAIEEGNYVIAQAN 620 + G ++ ++ DG + +L +G V + Sbjct: 506 VMAYPSRLDAKGMIDLDDLLLSLGVTPCGAGSRNGDGRIGSTHLHLPVSIDGRIVGGASP 565 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM-------DVSTQQVVSVGASLIPFLEH 673 S L L + + +V + + + A L+ + + Sbjct: 566 SVL---KIIAAHLRKLKVDNPPVVPPTLEVGLVPPGNPGAPYPGLYLFTCAARLVRPVLN 622 Query: 674 DDANRALMGANMQRQAVPTLRADKPLV-GTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 + +++ + D+ + G + + + ++ + + D ++ Sbjct: 623 RASGHTEFIGPLEQGYMDIACLDEDIREGITTHQELDPTNM---LSLIANLTPFSDQNQS 679 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + + +M G ++L R + Q P + + G+ D Sbjct: 680 PRNMYQCQMGKQTMGTPAHSLPY--RPDNKLYRLQTPQAPVVQTSIHGEYKMD------- 730 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT------KLG 846 E G N VA + + G++ EDS+++++ V+ + + ++ Sbjct: 731 EYPNGTNAVVAVLSYTGFDMEDSVILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSS 790 Query: 847 PEEITADIPNVGEAA---LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 E++ N + L + G+ +G +T GD L V Sbjct: 791 GEDVRMKFSNKVKFDKVMYPSLQDDGLPQVGDCMTEGDPLYCVVDSISGM---------- 840 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 D + + V V+ D + + I + Sbjct: 841 -----------DRAAKHKEREIAYVQSVRALGNDSGKGADNKVSITLRFPRNPVLGDKFS 889 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 + + G+ S + + + P Sbjct: 890 SRHGQKGVLSILW---PQEDMPFSESGISPDVII 920 >UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophyta RepID=Q9LK40_ARATH Length = 1172 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 167/986 (16%), Positives = 322/986 (32%), Gaps = 196/986 (19%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 D L+S QL+S+ FIE GL+ F+S + L EP Sbjct: 41 SFFDKYGLISHQLNSYNYFIEH------GLQNVFQSFGEM---------------LVEPS 79 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 FDV + + Y+ ++ + + + ++ + + MT + +N Sbjct: 80 FDVVKKKDNDWRYATVKFGEVTVEKPTFFSDDKELEFLPWH----ARLQNMTYSARIKVN 135 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 V + + +S F+ + + +I Sbjct: 136 VQVEVFKNTVVKS-------------------------------DKFKTGQDNYVEKKIL 164 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 +K I++ ++ + IL EK + + + F I+ Sbjct: 165 DVKKQ--DILIGSIPVMVKSILCKTSEKGKENCKKGDCAFD--------QGGYFVIKGAE 214 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIE-----VPVEYIAGKVVAKDYIDESTGELICAAN 314 KV++ + + T R V + ++ A+DY + + Sbjct: 215 KVFIAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLS 274 Query: 315 MELSLDLLAK-LSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL--------SALVE 365 E+ + LL L S K L D D + + D + +AL Sbjct: 275 TEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTY 334 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + + ++ + P E+ + L S + Sbjct: 335 VEQQIKSTKFPPAESVDECL----------------------HLYLFPGLQSLKKKARFL 372 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL----VRVERAVKERLSL 481 ++K L++ GK + ++ D N+RI GE+ E + RV L ++ RA+++ LS Sbjct: 373 GYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLS- 431 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKR 528 GD D + ++A I+ + F + S + + NPL + R Sbjct: 432 GDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLR 491 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R + + R HP+H+GRVC + TP+G N GL+ ++S+ + LE Sbjct: 492 R----TRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQ-SLE 546 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTCRSKGESSL 644 + K+ +E+ + N + + FV +L + R + E Sbjct: 547 SVVEKLFAC-GMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPR 605 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD-------- 696 + D D + ++ + L+ L + + L + L Sbjct: 606 EMEIKRD-KDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGI 664 Query: 697 -----------------KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 +P + T E ++ GV+ VV + + + + Sbjct: 665 EEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCA-----VVPFANHDHGRRVLYQS 719 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 + + I + R + + P L LA L GQN Sbjct: 720 QKHCQ-QAIGFSSTNPNIRCDTLSQQLFYPQKPL------FKTLA-SECLKKEVLFNGQN 771 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR-----DTKLGPEEITADI 854 VA GYN EDSI++++ ++ F + I+ K E + Sbjct: 772 AIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGK 831 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 + + L++ G +IGA ++ GDI++G+ T G Sbjct: 832 THSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG----------------------A 869 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVE 940 D S+++ + G V V + + D + Sbjct: 870 DHSIKLKHTERGIVQKVVLSSNDEGK 895 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 90/436 (20%), Positives = 164/436 (37%), Gaps = 74/436 (16%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV--EAEKLDK 991 + ++ +A M + + E+ ++ ++ ++ G + K+D Sbjct: 782 YNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDS 841 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L D + +G + + E +K + ++ ++ ++ D+ Sbjct: 842 LEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDE----GKNF 897 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V L R GDK + HG KGV+ + ++ P+ G DIV+NP PSR Sbjct: 898 AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 957 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+LE L I ++++ A + + A Sbjct: 958 GQLLEAALSKG-------IACPIQKEGSSAAYTKLTRHA--------------------- 989 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 F EI E L G R+Y+GR+GE + +G Sbjct: 990 ---------------TPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGP 1034 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E Sbjct: 1035 TFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHE 1094 Query: 1290 MLTVKSD----DVNGRTK-------------------MYKNIVDGNHQMEPGMPESFNVL 1326 L SD + + K + V +H + +P +L Sbjct: 1095 RLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLL 1154 Query: 1327 LKEIRSLGINIELEDE 1342 +E+ S+GI + + + Sbjct: 1155 CQELFSMGITLNFDTK 1170 >UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit RPA2 n=10 Tax=Ascomycota RepID=RPA2_SCHPO Length = 1174 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 109/514 (21%), Positives = 178/514 (34%), Gaps = 111/514 (21%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA--SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 TP + + KL R G+ ++ + + +GT V V + G + + Sbjct: 713 TPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAM 772 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL-------VAGGVEAEKLDKLPRDRWL 998 + + + + + + R + E L KL D Sbjct: 773 ILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLP 832 Query: 999 ELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 +G+ E+ E + + E H E + R + G+D+ + + V L Sbjct: 833 FIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLL--GNDVGDSECQQIHVKL 890 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 + R GDK + RHG KG+ S+ P DMP+ E+G DI++NP PSRM IG +E Sbjct: 891 RITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIE 950 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 + G A G D + F E A Sbjct: 951 SLAGKAGACHG-------------------------------LAQDSTPFIYSEQQTAA- 978 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 E L G +Y G TG++ + + +G +Y + Sbjct: 979 ------------------DYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQR 1020 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+V DK R+TG +T+QP+ G+ + GG RFGEME A+ +G ++ +Q+ L Sbjct: 1021 LRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNC 1080 Query: 1295 SDDVNG---------------------------RTKMY-------------------KNI 1308 SD R + K Sbjct: 1081 SDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKPALGLEDTSDIWQDGSGKKF 1140 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 V G + +P FN L E+ ++ I + LE + Sbjct: 1141 VGGTNTTLIALPSVFNYLTAELTAMNIKMMLEVK 1174 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 103/746 (13%), Positives = 220/746 (29%), Gaps = 105/746 (14%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + +L K E + + + +R + Sbjct: 140 IPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRP 199 Query: 264 EKGRRITARHIRQLE----KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 R T+ L + D + + Y+ V + LI S+ Sbjct: 200 SFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLI------PSM 253 Query: 320 DLLAKLSQSGHKRIETLFTNDL-------DHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 +L L ++ K I D + + + L + R Sbjct: 254 MILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFR- 312 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 L +ED D+ VGR + +L E ++ +++KL Sbjct: 313 -------------VVLGVAEDLTDVE-VGRFLLQKVVLVHLREA--KDKFRLLLFMIRKL 356 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL----------- 481 + G+ D+ D ++ I G + + + +++ +++L Sbjct: 357 YALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDF 416 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ--------------FMDQNNPLSEITHK 527 D L I ++ F + L ++ N ++H Sbjct: 417 SDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHF 476 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R + G E VR + P +G +CP+ TP+G GL+N L+ + + Sbjct: 477 RMV---HRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSD 533 Query: 588 ETPYRKVTDGVVTDEIHYL------SAIEEGNYVIAQANSNLDEEGHFVEDLV------- 634 + + + D + ++ ++ L + V L+ Sbjct: 534 VSQIPSLLLSLGVDPPSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVK 593 Query: 635 --------TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 + + + + S A ++ ++H M + Sbjct: 594 LRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHISTGELDMLGPFE 653 Query: 687 RQAVPTLRADK---PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + + K P V T +E S ++ + + D ++ + + +M Sbjct: 654 QVYMDIACFPKEIVPKVSTHVE-----YSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGK 708 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 G L R++ Q + P L + D G N VA Sbjct: 709 QTMGTPGTALRY--RTDNKLYRLQTGQTPVVRPK-----LHNTYGLDH--YPNGTNAVVA 759 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI-----PNVG 858 + + GY+ ED++++++ + + + + E + Sbjct: 760 VISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPR 819 Query: 859 EAALSKLDESGIVYIGAEVTGGDILV 884 L KLD G+ +IG ++ GD +V Sbjct: 820 REWLQKLDADGLPFIGIKLEDGDPIV 845 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 63/464 (13%), Positives = 141/464 (30%), Gaps = 80/464 (17%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIE--------QDPEGQYGL 49 M + E++R K+ K P L + +DSF ++ + Sbjct: 1 MSFQTLERERTFKNPPK--DGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAF 58 Query: 50 EAAFRSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLR 97 ++ + + + ++ +P E + R TY + Sbjct: 59 DSITQEEGGALKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKS--- 115 Query: 98 VKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------ 133 RLV+ + G + + +EV G IP+M + Sbjct: 116 ---RLVLKFSWSVNGGPRQSEMREV--GMIPIMVRSNRCHLEGLSPAELIAHKEESEEMG 170 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------F 186 G F++NG E++I + + + ++ Y+ + R D Sbjct: 171 GYFIVNGIEKLIRMLILPKRNH-PTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTL 229 Query: 187 EFDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 + R R+ +P+ +IL+AL T++ FE ++ + N + V Sbjct: 230 HYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSD---KEIFEGIVGKDLGNTFLTDRVE 286 Query: 244 ERLRGETASFDIEANGKVYV-EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 LR + + R+ L +V + + AKD Sbjct: 287 LMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKD-- 344 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 L+ +L + + + ++ G ++ + + D L++ Sbjct: 345 ---KFRLLLFMIRKLYALVAGECCADNPDSPQH---QEILLGGFLYGQILKEKIEDWLNS 398 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + + P + ++ + FS+ D+ + + Sbjct: 399 IRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLS 442 >UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SSB7_ENCCU Length = 1062 Score = 324 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 108/526 (20%), Positives = 203/526 (38%), Gaps = 86/526 (16%) Query: 841 RDTKLGPEEITADIP---NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 + E++ +I G+ ++D+SGI+ I + + P + +P Sbjct: 596 EEWIGIMEQVFLNIDTEEGAGDGDYYEIDKSGILGI----------IAGLIPYSDHNQSP 645 Query: 898 EE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 ++ + G A +++ D ++ N + ++ + + + V+ + Sbjct: 646 RNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYLQSPIVRTEGY--EMVKDYPVGINCMV 703 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 L D+ + L I + I L G V + L + + + ++ + Sbjct: 704 AVLSYTAYDMEDALVINKNS----IDRGLFTGYVYKTEKVPLDKGYFFTYLPSVGQRIQK 759 Query: 1011 LEQLAEQYDELKHEFEKKL------EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + L D+ E+EK+ ++ + D + + + R GD Sbjct: 760 DDTLYRYVDQDGREYEKRYLGTEPGIVDIVRVFENDM----GERCATFTIRIVRSPMIGD 815 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K + RHG KGV S P DMP+ E+G DI++NP PSRM IG ++E+ G Sbjct: 816 KFSSRHGQKGVCSMHWPGIDMPFTESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLS 875 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G++ + + ++ + + E Sbjct: 876 GNEQDGTVFKKSFLLEQEEGDDEKVR---------------------------------- 901 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 ++ + L+ G +Y G G +F + VG +Y +L H+V DK Sbjct: 902 ------RKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQ 955 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD-VNGRTK 1303 R+ G+ T+QP+GG+ + GG RFGEME AL ++GA+Y LQ+ L SD V Sbjct: 956 VRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSDSTVFEYCG 1015 Query: 1304 MYKN---------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ I + MP F L E+ ++ I ++++ Sbjct: 1016 TCRSILFTNNGDCICGSSDLKAVEMPYVFKYLCCELLAMNIKVQID 1061 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 112/799 (14%), Positives = 220/799 (27%), Gaps = 138/799 (17%) Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK---VLYNARIIPYRGS---WLDFEFDP 190 ++ G ++IV ++H +P F SDK + R + Y+G + D Sbjct: 45 LVKGKTKIIVEEIHVAPP--FLSDKDHISVDRRLLPRECRERGLTYKGKMVVRVSLFHDN 102 Query: 191 KDNLFVRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 K V D+ P + + + + E D Sbjct: 103 KHV--VTEDKSAGHFPIMVRSTLCHLNGIKNKNEVGE-------DEDEIGGYFIINGIDR 153 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 F+I R V + V + I D + Sbjct: 154 FIRFNIMQKRNHIFAFKMRKKTSFFSDY---MVSMRCVGRDEIGHMNFLHYCTDGNVVIK 210 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTN--DLDHGPYISETLRVDPTNDRLSALVEIY 367 I E L+ L + E LF ++ + R L I Sbjct: 211 IFHKKYEFLFPLVLVLKALVNTTDEELFGALGGGQRAVHLLKCFAEHNVFSRTECLDYIG 270 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 ES E +Y +S + S + + +I Sbjct: 271 SRF-----SAILNFESKAEVAEEILSKYVVSHL---------------SSNLDKFNFLIL 310 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA------------- 474 +KL + + DD D N + + ++ + R + R Sbjct: 311 AARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKTYYKLE 370 Query: 475 ----------------VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS--------- 509 ++ L + + + + IN I ++ F S Sbjct: 371 GEKRKLEGDSVTESGFCEDELDISKIREIFKRTSIN---IGQRMELFLSSGSITLTSCSD 427 Query: 510 -----QLSQFMDQNNPLSEITHKRRIS--ALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 S ++ N ++H R ++ P +T +R + P +G +CP+ Sbjct: 428 ILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSMVT------SIRKLRPESWGFLCPVH 481 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 TP+G G++ ++ A+ GVV + Sbjct: 482 TPDGAPCGVLLHMAKEAEVVSRDDDFNTDILFEFGVVPS------------IRGVEMGIP 529 Query: 623 LDEEGHFVEDLVT----CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + G V + R E + ++ + S ++ S+ F R Sbjct: 530 VLVNGRVVGSTSSPSDLTRMVREYRNRNGLMIEVVYTSEPKMF---PSVCIFSSVGRFAR 586 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA----KRGGVVQYVDASRIVI 734 +M + + + L E A D + G++ Y D ++ Sbjct: 587 KVMNRRLGSEEWIGIMEQVFLNIDTEEGAGDGDYYEIDKSGILGIIAGLIPYSDHNQSPR 646 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSLGEPVERGDVLADGPSTDL 791 + + +M G +N+ TR++ Q P V +G Sbjct: 647 NMYQCQMAKQAIGHPAHNIR--TRTDPTMYTVNYLQSPIV-----------RTEGYEMVK 693 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD-TKLGPEEI 850 +G N VA + + Y+ ED++++++ + FT + Sbjct: 694 D-YPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTEKVPLDKGYFFTYLPS 752 Query: 851 TADIPNVGEAALSKLDESG 869 + +D+ G Sbjct: 753 VGQRIQKDDTLYRYVDQDG 771 >UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepID=B3RKF5_TRIAD Length = 780 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 105/491 (21%), Positives = 177/491 (36%), Gaps = 95/491 (19%) Query: 886 KVTPKGETQLTPEE----KLLRAIFGEKASDVKDSSLRVPNGVSGT-VIDVQVFTRDGVE 940 ++TP + +P ++ + G K S + G + D + + VE Sbjct: 351 RLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSDNKLYRIQGYDMEDAMILNKSSVE 410 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + I + ++ ++ L+I + LD LP+ + Sbjct: 411 RGFAHATIYKSEVINLNSKTADGLEI--------FGQTPGTTDSDNIDLDGLPK---IGS 459 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 L + L+ + + ++ G D L+ + V ++R Sbjct: 460 ILNSGDPYYCTLNLSTSQCVVHYYRGQEQGIVDDVKLLGSDSGRKPLQRICVKFRIERNP 519 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 GDK + RHG KGV S++ PIE+MP+ E+G DI+ NP G PSRM IG ++E+ G + Sbjct: 520 IIGDKFSSRHGQKGVCSQLWPIENMPFTESGMTPDILFNPHGFPSRMTIGMMIESMAGKS 579 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 A G D + F E + Sbjct: 580 ASLHG-------------------------------LCHDATPFQFSEKVSA-------- 600 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 + L+ G R+YDG +GE+FE + +G +Y +L H++ Sbjct: 601 -----------VDYFGKYLEKAGYNYFGTERMYDGMSGEEFEANIFIGTVYYQRLRHMIS 649 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 DK R+TG +T+QP+ G+ + GG RFGEME AL ++G ++ LQ+ L SD Sbjct: 650 DKFQVRTTGPIDSLTRQPVQGRKRAGGVRFGEMERDALISHGTSFLLQDRLLNCSDKSVA 709 Query: 1301 RTKM-----------------------------YKNIVDGNHQMEPGMPESFNVLLKEIR 1331 + +P + L+ E Sbjct: 710 HVCKKCGSVLGITTDVNKNEADIFREFSRKVYRCTTCDSTQEVTKMYLPYVYLYLVTEFA 769 Query: 1332 SLGINIELEDE 1342 +L I +E E Sbjct: 770 ALNIKAVIEVE 780 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 78/511 (15%), Positives = 165/511 (32%), Gaps = 74/511 (14%) Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM- 459 + N + +I +++KL + NG+ +++ D N+ I G M Sbjct: 3 NCLFNNLRNCIAVHLDRNEDKFNLLIYMIRKLYAVANGECQIESQDSPMNQEILLGGHMY 62 Query: 460 ---AENQFRVGLVRVERAVKERLSLGD---LDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 + + + L RV+ + + ++ + L+ + + N I ++ F + L Sbjct: 63 SMVLKEKLELWLSRVKNLILKYMAKTNDEKLENAIVRAANNGTNIPNQLEYFLATGNLVA 122 Query: 514 --------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 D+ N + ++H R ++ G E VR + P +G +C Sbjct: 123 RADLGLMQVAGYVLVADRLNFMRFVSHFR---SVHRGSFFTEMRTTAVRKLLPEAWGFLC 179 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE-----IHYLSAI--EEG 612 P+ TP+G GL+N L+ + T + I Y SA Sbjct: 180 PVHTPDGAPCGLLNHLAASCKVVTKMSDTTKLVSTLYELGMLSLSDPLIEYSSAHVVILD 239 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 ++ + + L + + ++ + + + L F Sbjct: 240 GKIVGY--IQKEIGKEIADKLRYLKINNMDMVDPSTEIALVHDG---ISGLYNGLYLFTS 294 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 R + +Q+Q + G V +D +TA V Sbjct: 295 PARMIRPVTNLRLQKQEMI-----------GTFEQVFMDICITAEEAYAEVTT------- 336 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 +++ M + + + +S +N QM ++G P++ +D Sbjct: 337 HQELSPCSMLSA--LARLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSD------- 387 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 N GY+ ED++++++ V+ + EI Sbjct: 388 ------NKLYRI---QGYDMEDAMILNKSSVERGFAHATIYKSEVINLNSKTADGLEIFG 438 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 P ++ +D G+ IG+ + GD Sbjct: 439 QTPGTTDS--DNIDLDGLPKIGSILNSGDPY 467 >UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomycetales RepID=C4QY42_PICPG Length = 1165 Score = 322 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 97/467 (20%), Positives = 153/467 (32%), Gaps = 111/467 (23%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + ++++ + I + F Sbjct: 756 MDDAMIINKSSDERGFGYGTMYKVEVIDLADSRRKGDPITQHFGFG-------TDEWPES 808 Query: 988 KLDKLPRDRWLELGL----TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 L D +G D + L + + H E + + I+ DDL Sbjct: 809 WKQNLDEDGLPAIGTLVNEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLIS--DDLG 866 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 L++V + + R+ Q GDK + RHG KGV S+ P DMP+ E G D+++NP Sbjct: 867 DSELQMVTIKYRITRQPQIGDKFSSRHGQKGVCSRKWPQIDMPFTETGIQPDVIINPHAF 926 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG +E+ G A G ++ + E Sbjct: 927 PSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNE-------------------------- 960 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 D E L G +Y G TGE+ Sbjct: 961 ------------------------DDTPADFFGEQLISAGYNYHGNEPMYSGVTGEELRA 996 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 997 DIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRNGGIRIGEMERDALIGHGT 1056 Query: 1284 AYTLQEMLTVKSDDVNGRTKM----------------------YKNIVD----------- 1310 A+ LQ+ L SD + Sbjct: 1057 AFLLQDRLLNCSDYTQTSICKGCGSLLNTQTSVPRIGTKAMIHCRRCSTKINDVTAGTTD 1116 Query: 1311 ---------------GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 GN +P L E+ ++GI + E Sbjct: 1117 DMDLWEDGQGNRYTGGNDTTTVAIPFVLKYLDSELSAMGIRMRYNVE 1163 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 128/932 (13%), Positives = 282/932 (30%), Gaps = 104/932 (11%) Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER---LRGETASF 253 I ++P + + +L K + + + + L + + Sbjct: 133 EIREAGQIPVMLKSNRCHLEKMSPNELVKNKEESDELGGYFIVNGIEKLVRMLIVQRRNH 192 Query: 254 DIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + +G T IR + D V G V + ++ + Sbjct: 193 PMALIRPSFGNRGDSYTQFGIQIRAVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPV 252 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 ++ ++ + G ET + D + + + L + R Sbjct: 253 PMILKALVETNDREIFDGIVGSETSNSFLTDRLELLLRNYKHYKLVSKQETLAYLGDKFR 312 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 D+S V K + ++ +++K Sbjct: 313 -----------------VVFNATPDVSDVDVGKEVLRRIVLVHLPDNRDKFRLLLFMIRK 355 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-------DL 484 L + +G D+ D ++ + G + + + +++ ++ + Sbjct: 356 LYALVSGDCCPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLASIRLQIQTDINRGYPVNF 415 Query: 485 DTLMPQDMINAKP---ISAAVKEFFGSSQL-SQ-------------FMDQNNPLSEITHK 527 D + + I ++ F + L SQ ++ N I+H Sbjct: 416 DEPKYMSRVFQRINENIGKKLQYFLSTGNLVSQTGLDLQQVSGYTVVAEKINFYRFISHF 475 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R + G E VR + P +G +CP+ TP+G GL+N L+ + + Sbjct: 476 RMV---HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKISTEESD 532 Query: 588 ETPYRKVTDGVVTDEIHYLSA------IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 + KV + H +A ++ ++ ++ + L + +G Sbjct: 533 VSKVPKVLSKLGVSANHVFAAGPQMCCVQLDGKIVGW--CTHEQAKIVADTLRFWKVEGG 590 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPL 699 + +V ++ L F R + + ++ + P +A + Sbjct: 591 HGIPLDLEVGHV---PPSSRGQYPGLYLFGGRARMTRPVRYLPLDKEDIIGPFEQAYINI 647 Query: 700 VGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 T E V S ++ + + D ++ + + +M G L Sbjct: 648 AVTPEEIESNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALV 707 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 RS+ Q P+ + + L D D G N VA + + GY+ +D Sbjct: 708 --HRSDNKLYRLQTGQ----TPIVKAN-LYDDYGMDN--FPNGTNAVVAVISYTGYDMDD 758 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAALSKLDESGI 870 ++++++ + + D++ + IT E+ LDE G+ Sbjct: 759 AMIINKSSDERGFGYGTMYKVEVIDLADSRRKGDPITQHFGFGTDEWPESWKQNLDEDGL 818 Query: 871 VYIGAEVTGGDILVG-----------KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 IG V GD +V K E E KL+ G+ + +++ Sbjct: 819 PAIGTLVNEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLISDDLGDSELQMV--TIK 876 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--IRA 977 + D F+ +K + + ++ + + + ++ I SR I Sbjct: 877 YRITRQPQIGDK--FSSRHGQKGVCSRKWPQIDMPFTETGIQPDVIINPHAFPSRMTIGM 934 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 + + +A L + +D D+ + + H E Sbjct: 935 FVESLAGKAGALHGIAQDSTPWKFNEDDTPADFFGEQLISAGYNYHGNEPMY-----SGV 989 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 G++L + V Y ++ DK R Sbjct: 990 TGEELRADIYIGVVYYQRLRH--MVNDKFQVR 1019 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 56/396 (14%), Positives = 122/396 (30%), Gaps = 72/396 (18%) Query: 28 LSIQLDSFQKF-------IEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP-- 78 ++ + SF + G + F S P + + +++ + +L +P Sbjct: 31 VAPHIGSFNALTDGLNGGLLNLAVKDIGAKTIFDSNDPSRLGNK-LKIRVDAVQLAKPSV 89 Query: 79 ----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 EC+ R +TY + +K+ + + +I+E G+IP Sbjct: 90 AVGDKLSVNRKTLPSECRERMITYKSRFMLKVCWSVNDGPEET----EIREA----GQIP 141 Query: 129 LMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M + G F++NG E+++ + + + + Sbjct: 142 VMLKSNRCHLEKMSPNELVKNKEESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIR-PS 200 Query: 165 HSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPATIILRALN 214 + Y I R D + N+ R R+ +P +IL+AL Sbjct: 201 FGNRGDSYTQFGIQIRAVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPVPMILKALV 260 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 T + F+ ++ N + + LR + + + + Sbjct: 261 ETND---REIFDGIVGSETSNSFLTDRLELLLRNYKHYKLVSKQETLAYLGDKFRVVFNA 317 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL--SQSGHKR 332 DV ++V E + V+ + L+ +L + + Sbjct: 318 TP----DVSDVDVGKEVLRRIVLVHLPDNRDKFRLLLFMIRKLYALVSGDCCPDNPDATQ 373 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + + +G I E + + RL +I R Sbjct: 374 HQEVLLGGFLYGMIIKEKIEEYLASIRLQIQTDINR 409 >UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=Leotiomyceta RepID=A5H2B2_9LECA Length = 717 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 137/831 (16%), Positives = 245/831 (29%), Gaps = 144/831 (17%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPISA 500 DD DH G +R+ G + N FR ++ + V+ L + + + + I+ Sbjct: 1 DDRDHFGKKRLDLAGPLLANLFRTLFNKLNKDVERYLKNCIENNREFNLTLGVKSTHITN 60 Query: 501 AVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + SQ +++ S ++H RR + + R+ + Sbjct: 61 GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNT----PIGRDGKIAKP 116 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H TH+G VCP ETPEG GL+ +L++ + +E + + + Sbjct: 117 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVSVGAPIEGVVDFLFQRQ-MESLEEYD 175 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTC----RSKGESSLFSRDQVDYMDVSTQQVVSV 663 + + N LV R K + D D + + Sbjct: 176 PLTSPHATKIFVNGVWVGVHRSPAALVNAVQDLRRKQVIAYEVSLVRDIRDREFKILTDQ 235 Query: 664 GASLIP-FLEHDDANRALMG-ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 G L P F+ +D + G + + + L +D+ + + + Sbjct: 236 GRVLRPLFVVENDPKSPICGDLVLNKGHIEKLESDRDIPLDIDKEERVKKTYGWHGLVNE 295 Query: 722 GVVQYVDASR-----IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 GVV+YVDA IV+ + + Y L + N + Sbjct: 296 GVVEYVDADEEETVMIVMTPYDLNVSRQVQA--GYALPEDNDDP-----NARVKAPINPT 348 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 PS LG + V+ +P+ +N S + + + + + Sbjct: 349 AHTWTHCEIHPSMILG-------VCVSIIPFPDHNQ--SPRNTYQSAMGKQAMGVFLTNY 399 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 P ++ L +L Sbjct: 400 DQRMETMAHILYYPQK--PLATTRSMEFL-------------------------KFRELP 432 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 + + AI + +DS + + + G + E IE+ + Sbjct: 433 AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSPFFRSYSDQEGRIGLNVIEQFEKPM 492 Query: 956 AKKDLSEE---LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + + + L+ A + + K + D ELG + ++ + Sbjct: 493 RSNTMKLKHGTYEKLDDDGLIIPGARVSGEDIIIGKTAPITADAE-ELGQGIKIRERRDA 551 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 + E K VKV + + Q GDK A RHG Sbjct: 552 STPLRSTESGLV-----------DQVALTTNAEGHKFVKVRMRTTKIPQIGDKFASRHGQ 600 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KG I EDMP+ G DI I+ H + I I L Sbjct: 601 KGTIGITYRQEDMPFTSEGLVPDI---------------IINPHAIPSRMTIAHLIECQL 645 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 + +G F Sbjct: 646 SKVSS---------------------------------------LRGFEGDATPFTEVTV 666 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 + LL+ + G +Y+G TG + V +G Y +L H+VDDK+ Sbjct: 667 DSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 717 >UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L740_KORCO Length = 1121 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 165/881 (18%), Positives = 301/881 (34%), Gaps = 100/881 (11%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL--RGETA-----SFDIE 256 + I + A + I L +RL +GE F I Sbjct: 95 IELEIKVYAGGMELKTERVRIGHLPIMVKSKGCYLYGLDEKRLISKGEDPRDPGGYFIIN 154 Query: 257 ANGKVYVEKGRRITARHI------RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + +V V + + I V I + ++ + Y+ G + Sbjct: 155 GSERVLVMRDDIAPNKVIVEQTVAENKPYSHVAQIVSARAGLRTRLYLEYYM--RDGTIK 212 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + + L G +R E + I + + A E +++ Sbjct: 213 ASTGALRGIPVAMLLKALGLERDEDIVDAISSVDDEIRSEFLYSLDDVQRRAEEEGAQII 272 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 E + RY A ++ N E I+ + +++ Sbjct: 273 TREEALDYIGRRLVQAVPRADRIRY---AKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIE 329 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER----LSLGDLDT 486 KL+ + GK E DD DH N+R+R G + + FR ++ R +KE+ LS G D Sbjct: 330 KLLKVVRGKLEPDDKDHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYDL 389 Query: 487 LMPQDMINAKPISAAVKEFFGSS-------QLSQFMDQNNPLSEITHKRRISALGPGGLT 539 + + + + K ++ + + +SQ +++ N ++ + H RR+++ P GL Sbjct: 390 DIRRIIQSQKLVTQRIIRAVATGAWPGGDLGVSQNLERTNYIATLHHLRRVNSPLPAGL- 448 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 EVR H T GR+CP+ETPEG N+GL+ SL+++ +G P ++ Sbjct: 449 ---PLHEVRQTHGTSIGRLCPLETPEGTNVGLVRSLAIFCDV-TFGTDPEPIIELVLDWG 504 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 E G+ N L E+LV+ R +++ Sbjct: 505 AKPAKEAKPREVGSLTPVYVNGRLVAFTDKPEELVS------FLREKRAELNPE------ 552 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 + F+ + + + A+ R P + K + V Sbjct: 553 --------VNFIYNREEGAVFINADAGRMRRPLIPVSKLKEAMELLPKVDSGELSFTDLV 604 Query: 720 RGGVVQYVDAS------------RIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTC 764 + GVV+ +DA I K + P ++ ++ Sbjct: 605 KMGVVELLDADEEEYAVVAQSIEEITDKHTHFDFAPYAMFGVAASQIPYAEHNNIPRDII 664 Query: 765 INQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMP 806 + M LGE + + D + T GQN+ VA +P Sbjct: 665 GSNMVRQGLGEYLANWRLRFDSRAFLMFYPQRPIVETRGAEITGYNYRPSGQNLVVALLP 724 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR-------DTKLGPEEITADIPNVGE 859 +GYN +D++++S+ + + + +R D P + E Sbjct: 725 MDGYNMDDALVMSKGAIDRGAARAVFFRTYETEARRHAIIEGDKFENPVALKKVSGKKEE 784 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 KL E GIV V GGD+L+GK +P +PE + + + + +D+S+ Sbjct: 785 QYYQKLGEDGIVDPETYVEGGDVLIGKTSPPR---FSPELTVGSG-YPQYTFERRDTSIS 840 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 + G V DV + T+ G EK R E + K + Q G+ R + Sbjct: 841 MRAWERGVVTDVLLATKTGGEKLVRVNVRETRPPELGDKFATRHGQKGVLGMIYRHEDMP 900 Query: 980 V--AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 G + LD + +G E ++ L ++ Sbjct: 901 FTAQGIIPDIVLDPHTIPSRMTIGQLYEIIAGKVGALEGRF 941 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 88/400 (22%), Positives = 139/400 (34%), Gaps = 83/400 (20%) Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE--KQNQLEQLAEQY 1018 + Q L + G V K L +G + + + ++ + Sbjct: 784 EQYYQKLGEDGIVDPETYVEGGDVLIGKTSPPRFSPELTVGSGYPQYTFERRDTSISMRA 843 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 E + L K G K+V+V + R + GDK A RHG KGV+ Sbjct: 844 WERGVVTDVLLATK-----------TGGEKLVRVNVRETRPPELGDKFATRHGQKGVLGM 892 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I EDMP+ G DIVL+P H + IG Sbjct: 893 IYRHEDMPFTAQGIIPDIVLDP---------------HTIPSRMTIGQLY---------- 927 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 E++ +G + F ++ E Sbjct: 928 -----------------------------EIIAGKVGALEGRFVDGTPFMSEPVEDLMEA 958 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L SG+ +YDGRTG + PV +G Y +L H+V DK+HAR+ G L+T+QP Sbjct: 959 LVKLGFEYSGEEIMYDGRTGRMIKAPVFIGISYYQRLKHMVRDKIHARARGQMQLLTRQP 1018 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------------- 1303 + G+A+ GG R GEME L ++GAA +++ +SD Sbjct: 1019 VEGRARGGGLRLGEMEGEVLISHGAASVIRDRYIDQSDKTIIYVCKECGTIAFFNQKTNE 1078 Query: 1304 -MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + ++E+ S +++ L E Sbjct: 1079 FFCPRCQSSVEVKPLITSYASKLFIEELMSGHVDVRLSVE 1118 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 137/421 (32%), Gaps = 73/421 (17%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K+ + L +Q++SF +F+E+ G++ + I+ N Sbjct: 3 SKRSEVDFYPIVKAYFRERNLADVQIESFNRFLER------GIQEVVDAFKEIE-LVENY 55 Query: 67 ELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 +L +G P D E ++R Y AP+ +++++ + Sbjct: 56 KLILSRVYVGRPEIDEYDGSSLPAMPNEIRLRNADYIAPIELEIKV--------YAGGME 107 Query: 117 IKEQEVYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRS 152 +K + V +G +P+M G F+ING+ERV+V + + Sbjct: 108 LKTERVRIGHLPIMVKSKGCYLYGLDEKRLISKGEDPRDPGGYFIINGSERVLVMRDDIA 167 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRG---SWLDFE-FDPKDNLFVRIDRRRKLPATI 208 P + + A+I+ R + L E + + R +P + Sbjct: 168 PNKVIVEQT--VAENKPYSHVAQIVSARAGLRTRLYLEYYMRDGTIKASTGALRGIPVAM 225 Query: 209 ILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 +L+AL E I+D + L + R E I + GR Sbjct: 226 LLKALGLERDEDIVDAISSVDDEIRSE--FLYSLDDVQRRAEEEGAQIITREEALDYIGR 283 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 R+ R I EY+ + + E + ++ LL Sbjct: 284 RLVQAVPRA------DRIRYAKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKLL----- 332 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 ++ D + ++ LR+ T + Y+++R + E S + Sbjct: 333 ----KVVRGKLEPDDKDHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYD 388 Query: 388 L 388 L Sbjct: 389 L 389 >UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY16_DUNSA Length = 924 Score = 319 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 141/406 (34%), Positives = 207/406 (50%), Gaps = 42/406 (10%) Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 + + + + +I L+ ++ ++ + + V + Sbjct: 516 SINDNKILSQQNKISSENLRSGTREGTKNFSLGQNNKIVLSGKFSGQSRVI--NFSNFSQ 573 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + + Q + KKL+ K K + ++ + +YL Sbjct: 574 LSSYTKKFRKNPRVLRTLQTLVDGQLKNLKIMKKLKNKAEKGGFVSTKSIKDIETIHIYL 633 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR+IQ GDKM+GRHGNKG++S+I P++DMP+ +GTP+D+VLNPLGVPSRMN+GQI E Sbjct: 634 AEKRKIQVGDKMSGRHGNKGIVSQILPMQDMPFLPDGTPIDMVLNPLGVPSRMNVGQIYE 693 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 LG+A K +G+ + G + + S + + Sbjct: 694 CLLGLAGKYLGEHYKISSFDE--------------IYGPEASRSFVFSKLYEARCKTGFK 739 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 L + G+IRLYDGRTG+ + +PVTVG YML+ Sbjct: 740 -------------------------WLFNPQYPGKIRLYDGRTGDCYHQPVTVGQSYMLR 774 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+VDDK+H RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLTVK Sbjct: 775 LVHMVDDKIHMRSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWALEGYGAAFTLLEMLTVK 834 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDD+ GR ++ N++ G PE+F VL+ E+++L ++I L Sbjct: 835 SDDLTGRMTLWSNLILNKDL-TIGTPEAFKVLICELQALCLDIGLY 879 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 114/291 (39%), Gaps = 35/291 (12%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L + RSNQ+TC+ P V G+ V+ GD L D ++ GEL+LGQN+ +A+MPW GY Sbjct: 95 YKLETFHRSNQDTCLTHKPAVFEGDWVQSGDFLTDCANSVGGELSLGQNIFIAYMPWEGY 154 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACV--SRDTKLGPEEITADIPNVGEAALSKLDES 868 NFED+IL+SER+V +D FT++HI+ +D E +T N + Sbjct: 155 NFEDAILISERLVSDDLFTSVHIERYEIENIQKDGISQQERLTNKEINEKMKSKE----- 209 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 K T E + K S + +S + + +S Sbjct: 210 -----------------KQTVARSAIRADENREYARKQNLKNSQTRQTSQKTKSNISQI- 251 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 ++ +I ++ ++ + I++ G +LV K Sbjct: 252 --------RTTRYEEITRDIPDVTPEEIC--HLDSFGIVKIGSIVEEGDILVGKITPINK 301 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 D P + L L + + + L + K+ K + + Sbjct: 302 KDFTPYQKLLYTILDKQIRPYRDSSLRAPKGIKAKVIDIKIFVKPGSVVRS 352 Score = 96.5 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+ + R T+ EEIT DIP+V + LD GIV IG+ V GDILVGK+T Sbjct: 240 TSQKTKSNISQIRTTR--YEEITRDIPDVTPEEICHLDSFGIVKIGSIVEEGDILVGKIT 297 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 P + TP +KLL I ++ +DSSLR P G+ VID+++F + G Sbjct: 298 PINKKDFTPYQKLLYTILDKQIRPYRDSSLRAPKGIKAKVIDIKIFVKPGSV----VRSP 353 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 K K D + LE R++A Sbjct: 354 FAYSSKFLKTDPPKRSSKLEKSKKVRVKARSEEKS 388 >UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide, putative n=3 Tax=Fungi/Metazoa group RepID=A8P4S3_BRUMA Length = 1104 Score = 319 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 118/776 (15%), Positives = 247/776 (31%), Gaps = 94/776 (12%) Query: 203 KLPATI-----ILRALNYTTEQILDLF-FEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 K+P + +L+ +N + + ++ + I ++ L+ E+L Sbjct: 125 KMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKVVLIQEQLSKNRI----- 179 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 + + + + ++ K + + D + A E Sbjct: 180 ---MIGRNSKKELQCEILSSTQERKSKTYIASKKQRYYVRHNQLSDDVPIAIIFKAMGFE 236 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 D++ S G + E + AL I ++ + Sbjct: 237 SDHDIV---SAVGLEEKFVAAMAPS------IEECASHQIVTQEGALQYIASKVKIRKFG 287 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + S + A+ + +G+ + + ++++L+ Sbjct: 288 PATSGTSTLPR--------EHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAE 339 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE----RLSLGDLDTLMPQDM 492 G E DD D GN+R+ G + F R +K L L Sbjct: 340 VGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNSLGKTLAAPLDIVKH 399 Query: 493 INAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE--- 546 + I+ A+ + + +F M++ ++ IS L G +TR + FE Sbjct: 400 VRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYISVL--GMMTRINSTFEKTR 457 Query: 547 ----VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 R + P+ +G +CP +TPEG + GL+ +L++ + E P ++ ++ Sbjct: 458 KVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHITT-DSDEKPVIRLLYNAGVED 516 Query: 603 I--HYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 + + SAI Y I N + + V + R G + F + S Sbjct: 517 VKSLHFSAIHNPAYHIVFLNGVIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTNAAQRS 576 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV-- 714 + S G L + + + R + V G+ + V+ Sbjct: 577 V-YIASDGGRLCRPYIIVKNSIPQVTQEHIEELKKGYRIFEDFVDDGLIEYLDVNEMNDA 635 Query: 715 ---------------------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 T + G++ Y ++ + M G+ + Sbjct: 636 SIAVYENQIKPTTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM--GKQAMGTIGY 693 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 + R + + V P+ + + + +L GQN +A M ++GY+ E Sbjct: 694 NQQKRIDSLMYL----LVYPQRPLVKTKTI---EFCNFEKLPAGQNAIIAVMSYSGYDIE 746 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP---NVGEAALSK--LDES 868 D++++++ + + + +R + + LD+ Sbjct: 747 DALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTIEAATRKPIYKHQVLDQE 806 Query: 869 GIVYIGAEVTGGDILVGKVTP--KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 GIVY+GA + +++ K P E T I G + KD S+ N Sbjct: 807 GIVYVGACIRSKQVMINKHMPVVSMEAGATVSNNDGTNIGGSHEVEYKDVSVVYRN 862 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 103/267 (38%), Gaps = 64/267 (23%) Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+++ G D+++NP G ++ K+ Sbjct: 885 EDMPFNDLGMCPDMIMNPH----------------GYPSRMTVGKLM------------- 915 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 E++ + G F G + + E L Sbjct: 916 -------------------------ELLSGKNAVLSGKFHYGTAFGGDQVDIVCEELAAR 950 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 G+ L G TG+Q + G +Y KL H+V DKMHAR+ G +++T+QP G+ Sbjct: 951 GFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1010 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------MYKNIVDGN 1312 A+ GG R GEME L AYGA+ L E L V SD DV + + Sbjct: 1011 ARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDVCSQCGLIGYKSWCQMCRSSR 1070 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 +P + +L +E++S+ I ++ Sbjct: 1071 TMATIKIPYACKLLFQELQSMNIVPKI 1097 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 56/268 (20%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M E + I+ + P L V L+ + S+ F+ + ++ R+ I Sbjct: 2 MEKITGEVQTIKDKWTLVPAFLQVRGLVKQHIASYDYFVSTE------IKKILRANDKIT 55 Query: 61 -SYSGNSELQYVSYRLGEP-----------VFDVQECQIRGVTYSAPLRVKLRLVIYERE 108 + + L+Y+ +G P EC++R +TYSAP+ V + Sbjct: 56 SDANPSFYLKYLDIHVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYT----- 110 Query: 109 APEGTVKDIKEQEVYMGEIPLMT------------------------DNGTFVINGTERV 144 + + + +G++P+M G F+I G+E+V Sbjct: 111 ---RGSQRVLRNGLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKV 167 Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRK 203 ++ Q S K ++L + + + + K +VR ++ Sbjct: 168 VLIQEQLSKNRIMIGRNSKKELQCEILSSTQERKSK----TYIASKKQRYYVRHNQLSDD 223 Query: 204 LPATIILRALNY-TTEQILDLFFEKVIF 230 +P II +A+ + + I+ + F Sbjct: 224 VPIAIIFKAMGFESDHDIVSAVGLEEKF 251 >UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926601 Length = 1371 Score = 319 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 97/430 (22%), Positives = 160/430 (37%), Gaps = 94/430 (21%) Query: 957 KKDLSEELQILEAGLFSRIRAVLVA--GGVEAEKLDKLPRDRWLELGLTDEEKQNQLE-- 1012 ++L +++ + + +L ++ E L + GL ++ + Sbjct: 992 WEELDRKVRETQPSSRESLWNMLEEQWNAIQPEILRSDEESSTFKSGLLGKDGLPPIGRF 1051 Query: 1013 -QLAEQYDELKHEFEKKLEAKRRK----------ITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 Q + Y H + + + K G D L V + L ++R Sbjct: 1052 MQHGDPYYSYYHIINGEYKTVKYKHMEPAYIDDIKILGSDKGDRELLKVSIKLRIQRNPI 1111 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK A RHG KG++S P E+MP+ E+G DI+ NP G PSRM IG ++E+ G +A Sbjct: 1112 IGDKFASRHGQKGILSVKWPAENMPFTESGMIPDIIFNPHGFPSRMTIGMMIESMAGKSA 1171 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G D + F E A Sbjct: 1172 ALHG-------------------------------ITHDSTPFIFSEKKPAAH------- 1193 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 + E+L G R+Y G G++ + + +G +Y +L H+V D Sbjct: 1194 ------------YMGEILVKAGYNYYGNERMYSGINGKEMDVDIFIGIVYYQRLRHMVAD 1241 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----D 1297 K RSTG +T QP+ G+ + GG RFGEME AL A+G+ + L + L SD Sbjct: 1242 KYQVRSTGPVDNLTHQPVQGRKRQGGIRFGEMERDALIAHGSGFLLHDRLFNCSDRCETH 1301 Query: 1298 VNGRTK-------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 V + + G+ + +P F L+ E+ + Sbjct: 1302 VCTKCGSIFTPIVRKPVTHHDSLIGFNDRKWFCRVCGHGDDIQKMLVPYVFKYLIAELTA 1361 Query: 1333 LGINIELEDE 1342 + I + L+ + Sbjct: 1362 MNIRLVLDVK 1371 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 81/625 (12%), Positives = 177/625 (28%), Gaps = 75/625 (12%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + + L + E + + + L ++ V Sbjct: 132 VPVMVKSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKIL-------------RMLV 178 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 + R +R+ K L I + + KD +L + Sbjct: 179 MQRRNYPLAMVRKSWKSRGPLFTEFGVSI--RSIQKDQSGNINVLHYLTDGS-FTLSFIH 235 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLR--VDPTNDRLSALVEIYRMMRPGEPPTREAA 381 + Q L + YI + L + +V + R + ++ Sbjct: 236 QKEQFFVPLALILKALTANSDQYIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQNDV 295 Query: 382 ESLFENLF----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 F + + + F +L + +I + +KL + N Sbjct: 296 LKYMGMRFRIKVNLPEWTSDEDIAKYMFQTCVLVH--LEKITDKFNLLIYMTQKLFALAN 353 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 K + D+ N + G L ++E + Sbjct: 354 DKCAAESPDNPMNHEVLLGGHTYLLV----LKQMESF-----------------LATGNI 392 Query: 498 ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 +S + ++ +S D+ N + ++H R + G E VR + P +G Sbjct: 393 LSKSGLGLMQATGMSVVADKLNFMRYLSHFR---CIHRGAFFTEMRTTTVRKLLPEAWGF 449 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA 617 +CP+ TP+G GL+N L+ + + + K+ + + +Y + Sbjct: 450 LCPVHTPDGAPCGLLNHLAAACKVENTKYPTSDLIKLLVKLGMQLCDMDLGLASDSYSVL 509 Query: 618 QANSNLDEEGHFVEDLVTCRSKGES----SLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 + + + V C+ ++ + + + S + F + Sbjct: 510 LDGCVVGRLRSHISEEV-CKKLRVFKALQKEMVPPTMEIIFIPRTKFASQYEGIFLFTDV 568 Query: 674 DDANRA----------LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 R +G+ Q + +D+ T + +++ + Sbjct: 569 ARMIRPVRNLLTNTVEYIGSFEQVYMDIAVYSDEIHAPTTTHMELN---DCAMLSELATL 625 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 Y D ++ + + +M G L RS+ Q P L + Sbjct: 626 TPYSDFNQSPRNMYQCQMGKQTMGTPCQALK--HRSDNKMYKIQTPQAPLVRNKTYSEYG 683 Query: 784 ADGPSTDLGELALGQNMRVAFMPWN 808 D LG N VA + + Sbjct: 684 VDN-------FPLGTNAVVAVISYT 701 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 111/340 (32%), Gaps = 69/340 (20%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP--IQSYSGN-SELQYVSYRLGEP-- 78 + + ++SF +E GL A + + P + G +E+ + +G P Sbjct: 28 LQEFIQPHIESFNYILE------NGLNEAVKLIIPQEFELPDGRRAEISILDCSIGTPVV 81 Query: 79 ----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 EC+ R TY A L V L+ I T + ++P Sbjct: 82 DDNNFTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVTKS--------IAQVP 133 Query: 129 LMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M + G F++NG E+++ + + + + K+ Sbjct: 134 VMVKSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRN-YPLAMVRKS 192 Query: 165 HSSGKVLYNARIIPYRG---------SWLDFEFDPKDNL-FVRIDRRRKLPATIILRALN 214 S L+ + R + L + D L F+ + +P +IL+AL Sbjct: 193 WKSRGPLFTEFGVSIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKEQFFVPLALILKALT 252 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 ++Q +++++ D+ ++V LR + N + R ++ Sbjct: 253 ANSDQ---YIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQNDVLKYMGMRFRIKVNL 309 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + D+ + + + + D+ + Sbjct: 310 PEWTSDEDIAKYMFQTCVLVHL--EKITDKFNLLIYMTQK 347 >UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y3J9_CLAL4 Length = 1232 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 99/465 (21%), Positives = 154/465 (33%), Gaps = 113/465 (24%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + +++ I + F + Sbjct: 821 MDDAMIINKSADERGFGYGTVYKVEKVDLSLSRRRGDPITQHFGFG-------SDEWPET 873 Query: 988 KLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 +KL D +G+ EE E L + + H E + + + DD Sbjct: 874 WKEKLDDDGLPLIGVKVEEGDPIVAYFDETLGKTKIKTYHSSEPAYIEEVKLL--ADDTG 931 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 + + + V R GDK + RHG KGV S+ P DMPY E+G D+++NP Sbjct: 932 DSECQQITIKYRVTRAPLIGDKFSSRHGQKGVCSRKWPTVDMPYSESGIQPDVIINPHAF 991 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG +E+ G A G ++ + E Sbjct: 992 PSRMTIGMFVESLAGKAGALHGIAQDSTPWKFSE-------------------------- 1025 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 D E LKL G +Y G TGE+ Sbjct: 1026 ------------------------DDTPADFFGEQLKLAGYNYHGNEPMYSGVTGEELRA 1061 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 1062 DIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGT 1121 Query: 1284 AYTLQEMLTVKSDD----VNGRTKM------------------YKNI------------- 1308 AY LQ+ L SD + ++ Sbjct: 1122 AYLLQDRLLNSSDYAQTPICRSCGSLLNTQMSVPRIGSLASVKCRSCADKLETYIKKGEY 1181 Query: 1309 ---------------VDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 V G +P L E+ ++GI + Sbjct: 1182 VNEADIWEDGSGTKFVGGADTTTVAIPFVLKYLDSELTAMGIKMR 1226 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 136/925 (14%), Positives = 284/925 (30%), Gaps = 104/925 (11%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER---LRGETASFDIEANGK 260 +P + + +L +K + + + + L + + + Sbjct: 205 VPIMLKSNRCHLEKLSPDELVAQKEESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIRP 264 Query: 261 VYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + +G T IR + D V G V + ++ + ++ Sbjct: 265 SFGNRGASYTKFGVQIRCVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPVVMVLKAL 324 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 ++ + G +T + D + T + + + S L + R T Sbjct: 325 VETNDREIFDGIVAADTSNSFLTDRLELLLRTYKQYNLHSQKSTLAYLGDKFRVAFGATP 384 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 + ++ VGR R +L + + ++ ++KL + G Sbjct: 385 DVSD---------------IDVGREVLKRIVLVHLPDNA--DKFRLLLFSIRKLYTLVAG 427 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL----------GDLDTLM 488 D+ D ++ + G + + + + +K ++S D + Sbjct: 428 DCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQISSDIGRGVRVNFNDRKYMS 487 Query: 489 PQDMINAKPISAAVKEFFGSSQL-SQ-------------FMDQNNPLSEITHKRRISALG 534 M + I ++ F + L SQ ++ N I+H R + Sbjct: 488 RVFMRTNENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV---H 544 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 G E VR + P +G +CP+ TP+G GL+N L+ Q + Sbjct: 545 RGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCQIATKASDVSAVPAA 604 Query: 595 TDGVVTDEIHYLSA------IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 + H +A + ++ + E+G V D + R L + Sbjct: 605 LARLGVSPAHTFAAGPGLCCVHLDGKIVGWTS---HEQGRIVAD--SLRLWKVQGLHNLP 659 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMER 706 + + L F H R + ++ + P + + T E Sbjct: 660 KDLEIGYVPPSSKGQYPGLYLFGGHSRMMRPAKYLPLDKEDILGPFEQVYMNIAVTPAEI 719 Query: 707 AVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 V + ++ + + D ++ + + +M G L RS+ Sbjct: 720 EENVHTHVEFAPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALV--HRSDN 777 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 Q P+ + + L D D G N VA + + GY+ +D++++++ Sbjct: 778 KLYRLQTGQ----TPIVKAN-LYDDYGMDN--FPNGMNAVVAVISYTGYDMDDAMIINKS 830 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAALSKLDESGIVYIGAEV 877 + + ++ + IT E KLD+ G+ IG +V Sbjct: 831 ADERGFGYGTVYKVEKVDLSLSRRRGDPITQHFGFGSDEWPETWKEKLDDDGLPLIGVKV 890 Query: 878 TGGDILVG-----------KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 GD +V K E E KLL G+ RV Sbjct: 891 EEGDPIVAYFDETLGKTKIKTYHSSEPAYIEEVKLLADDTGDSECQQITIKYRV---TRA 947 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--IRAVLVAGGV 984 +I + F+ +K + + + + ++ + ++ I SR I + + Sbjct: 948 PLIGDK-FSSRHGQKGVCSRKWPTVDMPYSESGIQPDVIINPHAFPSRMTIGMFVESLAG 1006 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 +A L + +D D+ + + + H E G++L Sbjct: 1007 KAGALHGIAQDSTPWKFSEDDTPADFFGEQLKLAGYNYHGNEPMY-----SGVTGEELRA 1061 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGR 1069 + V Y ++ DK R Sbjct: 1062 DIYIGVVYYQRLRH--MVNDKFQVR 1084 Score = 59.9 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 60/456 (13%), Positives = 129/456 (28%), Gaps = 75/456 (16%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIE-------QDPEGQYGLE 50 M + +R ++ P L ++ + SF E G + Sbjct: 66 MGAQFRTLEREKRFQNPPKDKSAYPLLADAVAPHVGSFNALTEGADGGLLNLAVKDIGTK 125 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRV 98 F S + + +++ S +L P EC+ R TY L + Sbjct: 126 TIFDSNDETRLGNK-LKIRVDSVQLARPSVPPTDKLSVNRKTFPSECRERMSTYRGKLLM 184 Query: 99 KLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------G 134 K+ + + E G++P+M + G Sbjct: 185 KVVWSVNDGEEVSEVRDG--------GQVPIMLKSNRCHLEKLSPDELVAQKEESDELGG 236 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FE 187 F++NG E+++ + + + + + Y + R D Sbjct: 237 YFIVNGIEKLVRMLIVQRRNHPMALIR-PSFGNRGASYTKFGVQIRCVRPDQTSQTNVLH 295 Query: 188 FDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + N+ R R+ +P ++L+AL T + F+ ++ N + + Sbjct: 296 YLKDGNVTFRFSWRKNEYLVPVVMVLKALVETND---REIFDGIVAADTSNSFLTDRLEL 352 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 LR + + A DV I+V E + V+ + Sbjct: 353 LLRTYKQYNLHSQKSTLAYLGDKFRVAFGATP----DVSDIDVGREVLKRIVLVHLPDNA 408 Query: 305 STGELICAANMELSLDLLAKL--SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 L+ + +L + + + + +G I E + N ++ Sbjct: 409 DKFRLLLFSIRKLYTLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQI 468 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 +I R +R + + + Sbjct: 469 SSDIGRGVRVNFNDRKYMSRVFMRTNENIGQKLQYF 504 >UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium RepID=Q5CPZ8_CRYPV Length = 1287 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 155/1103 (14%), Positives = 337/1103 (30%), Gaps = 206/1103 (18%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLE--AAFRSVFPIQSYSGNSELQYVSYRL 75 P L L+ +DS+ F+ + + RS + ++++ R+ Sbjct: 114 LPYFLKTEGLVKHHIDSYNYFVTTEIQSIVRANANRMIRS-----DVDPSFFIEFLDARV 168 Query: 76 GEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 G P C++R +TY+AP+ V + V ++++ V +G Sbjct: 169 GMPKLEENMITVDLTPMMCRMRDITYAAPIFVDVDYV--------RGNTVVRKKNVEIGR 220 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNARII----- 177 IP+M + +++G + +L+ P G F K + L RII Sbjct: 221 IPVMLRSKVCILHGKTAAEMVKLNECPHDPGGYFVVKGTEKAILMQEQLSKNRIIVELDN 280 Query: 178 ------------PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLF 224 S F ++P I+L+A+ T ++I + Sbjct: 281 KHNYCATVTSTTAESKSRTLVVFKNGKLYLRHNSFSDEIPLCIVLKAMGIETEQEIFFMI 340 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + + E+ E + + + + K ++R + ++ Sbjct: 341 GNEPHHQEGIINSLQEVHQEGIFTQRQALLFMSKKAKSKFKSTFGSSRGFDKSNAEESAE 400 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 E+ K + D+L L++ I T++T+ Sbjct: 401 NSGFTEFGGSK---------------SSLCGTSIDDVLETLNRVLLSHIGTIYTDLHPKA 445 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG-RM 403 ++ + ++L++ +D Y + Sbjct: 446 LFLCLMAKRVLDASEDNSLLD-------------------------DKDYYGNKRIELAG 480 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 + L + + +L+K I + + R+ D Sbjct: 481 QLISILFEDLFKRFSVLTKKQIDQTLIRYFQTRDASKAGTGRDD---------------- 524 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLS 522 + D +P D+I +A G+ + +F M+++ Sbjct: 525 -------------SNSTYPDCFRNLPTDIITRGMQTALST---GNWSIKRFRMERSGMTQ 568 Query: 523 EITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 +T I++LG + R R + P+ +G +CP +TPEG + GL+ +L++ Sbjct: 569 VLTRFSYIASLGIMTRVDSQFEKARKVSGPRALQPSQWGILCPCDTPEGESCGLVKNLAL 628 Query: 578 YAQTNEY------------------------GFLETPYRKVTDGVVTDEIHYLSAIEEGN 613 F K+++ + +E + +++ Sbjct: 629 TTHITTDHCPQYLTSLLFTLGVQDISSCSYLDFNTKQSEKLSNEDLKNESSGKNNVKKHY 688 Query: 614 YVIAQAN--SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 YV + + L R KG F +++ S+ Q+ + G L L Sbjct: 689 YVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIFCNHIH-SSVQIATDGGRLCRPL 747 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS------------------- 712 D + Q + G+ + V+ Sbjct: 748 IIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDVNEENNLLIALRDENLTNETTH 807 Query: 713 ----GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 ++ + G++ Y + ++ + M G ++ R + + Sbjct: 808 LEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGS--VGFNQFLRCDSVLYL--- 862 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 V +P+ + + + +L GQN VA M + GY+ ED+I++++ V Sbjct: 863 -LVYPQKPLCKTRTI---EMINFEQLPAGQNSSVAVMSFAGYDIEDAIVMNKASVDRGFA 918 Query: 829 TTIHIQELACVSRDTKLGPEE-----ITADIPNVGEAALSK-----LDESGIVYIGAEVT 878 ++ + G E I+ N G S LD G+ +G +V+ Sbjct: 919 RCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFSFKNDSILDNDGVCNVGVQVS 978 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 DI+V K++P + + S+ K S ++ S + V + Sbjct: 979 EDDIIVNKMSPINTREYVGDPS------QFDLSEYKPSPVKYKGPTSSYIDRVILTENAD 1032 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 +I ++ +Q ++ + G + ++ + + P Sbjct: 1033 G------NQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIMN 1086 Query: 999 ELGLTDEEKQNQLEQLAEQYDEL 1021 G +L +L + Sbjct: 1087 PHGFPSRMTVGKLLELISSKASV 1109 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 134/386 (34%), Gaps = 75/386 (19%) Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 IL+ + + + K+ + ++ + + Sbjct: 964 ILDNDGVCNVGVQVSEDDIIVNKMSPINTREYVG------DPSQFDLSEYKPSPVKYKGP 1017 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + D +I KV RR + GDK + RHG KGV+ I ED+ Sbjct: 1018 TSSYIDRVILTENAD-----GNQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDL 1072 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 P+ E G D+++NP G ++ K+ Sbjct: 1073 PFSETGWCPDLIMNPH----------------GFPSRMTVGKL----------------- 1099 Query: 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP 1205 E++ ++ G F G E + L Sbjct: 1100 ---------------------LELISSKASVLDGNYRYGTAFGGTPLEESAKCLVEHGFH 1138 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 SG+ L G TGE E + VG +Y KL H+V DKMHAR G ++T+QP G+++ Sbjct: 1139 YSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRGPRQILTRQPTEGRSKD 1198 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQM 1315 GG R GEME L AYGA+ L E L + SD +V + Sbjct: 1199 GGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETNVCNQCGLFGYNNYCHYCKSSQDVS 1258 Query: 1316 EPGMPESFNVLLKEIRSLGINIELED 1341 +P + +L +E++++ + + Sbjct: 1259 IIRLPYACKLLFQELQAMNVCPRIRT 1284 >UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 99B1 RepID=D2TET4_9VIRU Length = 1507 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 160/1030 (15%), Positives = 327/1030 (31%), Gaps = 191/1030 (18%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSYRLGEPVF------ 80 ++ Q++S+ FIE + + + + S + + + + + P Sbjct: 23 VAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNPSVNRPAIQESDGF 79 Query: 81 ----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY----MGEIPLMTD 132 ++RG+TYS+ + V + I++R + + ++V+ + +IP+M Sbjct: 80 YKPITPHIARLRGLTYSSTVVVDV---IHDRINHTVSPPTLINRKVFRNVIIAQIPVM-- 134 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 RS + S+ + ++ DP Sbjct: 135 -----------------VRSKLCYLADVSENDLSADAKKHECKV------------DPGG 165 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 + + + +P T + V + + + E Sbjct: 166 YFIISGNEKTLIPQT--------------KIRTNHVFIFPSKHGEKHKYTAEV------- 204 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + E R T+ + + V + Sbjct: 205 -------RSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSV----------- 246 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV--DPTNDRLSALVEIYRMM 370 L L I N I + N A+++ Sbjct: 247 ------FILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMDWVGRN 300 Query: 371 RPGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 + T+E+ E +++ SE + + I + Sbjct: 301 VTSDTTRATKESREKYIDHIITSE------------LAPHMGLVNNPETNKKKMIFIGHM 348 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR-----VGLVRVERAVKERLSLGD 483 +++L+ + G+ VDD D N+RI S G + R + + +++++ Sbjct: 349 IQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPR 408 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSS----------------QLSQFMDQNNPLSEITHK 527 T ++++ K I++ +K F + + Q + + ++ + Sbjct: 409 EATFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGAS 468 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN----- 582 R+I+ + RE R +HP+ +G VC +TPEG GL+++L++ + Sbjct: 469 RKINT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPM 524 Query: 583 --EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 L T + T Y+ N I +D+ + + R G Sbjct: 525 QPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHG 584 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + ++ V S +L+ L D + MQ AV ++ Sbjct: 585 NLPFDCS--ISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQNPAV-VPNKYTRML 641 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV-IKVNEDEMYPG---EAGIDIYNLTKY 756 G+ + A++ + + + I + E++P + + Sbjct: 642 REGIIEYID-------SAEQTNMRVAIHHTDIEQDEYTHIEIHPALLTGICVSQIPFCDH 694 Query: 757 TRSNQNTCINQMPCVSLGEPVER--------GDVLADGP----STDLGEL------ALGQ 798 +S + ++G G VLA +T L EL G Sbjct: 695 NQSPRIAYQAAQCKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRLEELLGTSVVRSGA 754 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE--EITADIP- 855 VA M ++G+N +DS+L+++ + FT+ + + T E E +IP Sbjct: 755 VPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEEKGTGADIERFENPKNIPG 814 Query: 856 --NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 + EA SK+D+ G+ IG GD+L+GKV Q P+E +R Sbjct: 815 CSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKEGEVR------RDTK 868 Query: 914 KDSSLRVPNGVSGTVIDVQVFT--RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL 971 +D S V V+D F+ +G K + + K L+ + ++L Sbjct: 869 RDRS-HVLRTDEPVVVDAVFFSKTPEGHGYVKVRTRAIRIPMVGDKFCLTADHEVLTKDG 927 Query: 972 FSRIRAVLVA 981 + I V Sbjct: 928 WKYINNVTPD 937 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 107/295 (36%), Gaps = 75/295 (25%) Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 + RHG KGV P D P +G DI++NP H + IG Sbjct: 1266 SSRHGQKGVCGVTMPAADFPCTADGVAPDIIINP---------------HAIPSRMTIGM 1310 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + +L + +G Sbjct: 1311 LMEMVLSKVA---------------------------------------CYEGETQDGTP 1331 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G I + L+ + G LY+G +GE E + + Y +L H+V DK HAR Sbjct: 1332 FTGNNIELIADRLETHGMQRYGNEMLYNGMSGEILESMIFIAPCYYQRLKHMVVDKSHAR 1391 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV----NGRT 1302 + G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L +SD + Sbjct: 1392 NRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKC 1451 Query: 1303 K-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ G H +P S +L++E+ + I+ LE Sbjct: 1452 GHFAREGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLE 1506 >UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVD4_PHATR Length = 1211 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 134/849 (15%), Positives = 273/849 (32%), Gaps = 118/849 (13%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I+ KV + + + R + ++D K I + + +K YI G + Sbjct: 210 GYFVIKGVEKVILIQEQLSKNRV---ILEEDNKGIMASITSSTHERKSKAYILIKNGRVY 266 Query: 311 CAANMELS-LDLLAKLSQSGHKRIETLFTNDLDHGPYIS------ETLRVDPTNDRLSAL 363 N + + L G + L P I+ E + + AL Sbjct: 267 LKNNTLGDDIPVAVVLKAMGIESDLELVQLVGSESPIINALALSLEEPSRLGIHTQAQAL 326 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 I +R P+ ++ E R L+ V Sbjct: 327 RFIGAKIRGRSGPSGPSSSYRKNVSPEDEAREVLANVVLSH------VPVTHFDFREKAL 380 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER----L 479 I ++++++ + GK +DD D+ GN+R+ G + F + +K + L Sbjct: 381 YIGHIVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKIFNKDLKRQADLVL 440 Query: 480 SLGDL-DTLMPQDMINAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRISALGP 535 S + I I+ + + +F MD+ ++ +SAL Sbjct: 441 SKPNRTQAFDVVKTIRPDTITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSAL-- 498 Query: 536 GGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 G +TR + FE R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 499 GMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADT 558 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 P ++ + +++ ++ E ++ + N + +LV K Sbjct: 559 RPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRNLRKMRRR--- 615 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK----PLVGT 702 + + HD+ + + R P L D+ P + Sbjct: 616 ---------------GLAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIVDEETGLPKLQQ 660 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRI-----------------------VIKVNED 739 ++A+ + R G+V+YVD + ++ Sbjct: 661 IHMESLALGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAILHGLETRKMRYTHL 720 Query: 740 EMYPGEAG---IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS-------- 788 E+ P I + +S +NT M ++G DG Sbjct: 721 EVDPFTILGVVGGIIPFPHHNQSPRNTYTVAMAKQAMGSVSMNQYERMDGLIYTLIYPQK 780 Query: 789 ----------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 + + G N +A M ++GY+ ED+I++++ V + +++ Sbjct: 781 PMVKSRTLDLVNFDNIPGGHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQT 840 Query: 839 VSRDTKLGPEEITADIPNVGE----------AALSKLDESGIVYIGAEVTGGDILVGKVT 888 R G + T P+ G A +D+ GI +G ++ G ++V K + Sbjct: 841 SVRRYANGTMDRTCAPPDPGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNKES 900 Query: 889 PKGETQLTPE-EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 P T + + + K S + S V V + + + + Sbjct: 901 PADTTSNMAGVDFGFNSGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQF------ 954 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + ++ L+Q ++ + G ++ + + +P G Sbjct: 955 LIKVMLRQVRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGFPSRMT 1014 Query: 1008 QNQLEQLAE 1016 +L +L Sbjct: 1015 VGKLLELLV 1023 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 86/401 (21%), Positives = 143/401 (35%), Gaps = 63/401 (15%) Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 ++ R+ + G V K + P D + D Sbjct: 859 PGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNK--ESPADTTSNMAGVDFGFN 916 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + + Y + K+ + ++KV L RR + GDK A Sbjct: 917 SGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQF--LIKVMLRQVRRPEIGDKFAS 974 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KGV I P ED+P++E G D+++NP G P + +G + Sbjct: 975 RHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGFP---------------SRMTVGKLL 1019 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 ++ + G ++ S F +E Sbjct: 1020 ELLVGKA----------------GLYEGRQGYSSAFGEE------------------FGS 1045 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 E L L +G+ LY G GE + + G ++ KL H+V DK HAR+ Sbjct: 1046 ADTAQSASEALLRNGLNYTGKDILYSGTNGEPLDAYIFSGPVFYQKLKHMVLDKAHARAR 1105 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----- 1303 G +++T+QP G+++ GG R GEME L AYG + + E L SD + Sbjct: 1106 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLIMERLMHSSDAFSANVCLTCGL 1165 Query: 1304 -----MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + G + +P + +L +E++S+ + L Sbjct: 1166 LQYEGWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRL 1206 >UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota RepID=C8VU19_EMENI Length = 1225 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 111/821 (13%), Positives = 263/821 (32%), Gaps = 92/821 (11%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F + KV + + + R I + + + + I + + Sbjct: 250 GYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDRLYV 309 Query: 311 CAANMELSLDLLAKLSQSGHKRIETL-------FTNDLDHGPYISETLRVDPTNDRLSAL 363 + + ++ L G + + + E + AL Sbjct: 310 KHNVLSEDIPIVILLKAMGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQAL 369 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL-SK 422 I ++ S R + + + E++ Sbjct: 370 DWIGSRIK-------------INRKQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKA 416 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--- 479 + ++ ++++ +N VDD D+LGN+R+ G++ F + +K + Sbjct: 417 IYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKV 476 Query: 480 --SLGDLDTLMPQDMI--NAKPISAAVKEFFGSSQLS--QF-MDQNNPLSEITHKRRISA 532 ++ +I ++ I+ + + S +F M++ ++ I+A Sbjct: 477 LNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAA 536 Query: 533 LG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 LG + R R + P+ +G +C +TPEG GL+ +L++ Sbjct: 537 LGMMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDE- 595 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEE---GNYVIAQANSN---LDEEGHFVEDLVTCRSKGE 641 E P + + + ++I + E G+Y I+ + +F+ R G Sbjct: 596 EGPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGTPMALTRRPKYFLNAFRRLRRMGR 655 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 S F +++ + V + + L + ++ + + R+ + Sbjct: 656 ISEFVSIYINHHQRAV-HVATDDGRICRPLIIVEDGKSRVKKHHLRKLRDGTMQFDDFLA 714 Query: 702 TGMERAVAVDS-----------------------GVTAVAKRGGVVQYVDASRIVIKVNE 738 G+ V V+ T + G++ Y ++ + Sbjct: 715 QGLVEYVDVNEENDSLIAIYEKDITDTTTHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQ 774 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 M G+ I ++ R + + V +P+ + + T +L GQ Sbjct: 775 CAM--GKQAIGAIASNQFLRIDSILYL----MVYPQKPMVKSRTI---ELTKYDQLPAGQ 825 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 N VA M ++GY+ ED++++++ V ++ + G ++I + Sbjct: 826 NATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTKDILSPPTYEN 885 Query: 859 EAALSK---LDESGIVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEKASDVK 914 +A + K L+ G+ +G +V G++ + K TP + + P R I Sbjct: 886 DAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGMPGSDAGRPISYNPTP--- 942 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 + ++P D + + + +I ++ +Q ++ + G Sbjct: 943 -MTYKLP--------DPAYIDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGV 993 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 ++ + P G ++ +L Sbjct: 994 TGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELV 1034 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 94/427 (22%), Positives = 155/427 (36%), Gaps = 75/427 (17%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G + + + +I + + + +LE+ + + + AG V Sbjct: 855 GRCQVFRKYVTNMKSYSNGTKDILSPPTYENDAPIRKH-ALLESDGLAAVGEQVNAGEVY 913 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 K D+ + G+ + + + K ++ Sbjct: 914 INKSTP---DQSMSSGMPGSDAGRPIS--YNPTPMTYKLPDPAYIDKVMISATENE---- 964 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 +I+KV RR + GDK + RHG KGV I DMP+ + G DI++NP G PS Sbjct: 965 -NQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPS 1023 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM +G++LE G A G Sbjct: 1024 RMTVGKMLELVAGKAGVLSGQ--------------------------------------- 1044 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 G + ++ + L G+ L G TGE V Sbjct: 1045 ----------HGYGTCFSGTP-----VEQMTQTLIDKGFSYGGKDYLTSGITGEALPFYV 1089 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G +Y KL H+V DKMH+R+ G + +T+QP G+++ GG R GEME L AYG + Sbjct: 1090 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1149 Query: 1286 TLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 L E L + SD DV + + ++ +P + +L++E+ S+ + Sbjct: 1150 LLLERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQELMSMNV 1209 Query: 1336 NIELEDE 1342 L+ E Sbjct: 1210 TARLKLE 1216 >UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyceta RepID=B9WJL4_CANDC Length = 1166 Score = 316 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 97/466 (20%), Positives = 156/466 (33%), Gaps = 110/466 (23%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + + + + I + F Sbjct: 758 MDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFG-------TDEWPEA 810 Query: 988 KLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 +KL D +G+ EE + L + + H E + + + GDD Sbjct: 811 WKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPGYIEEVKLL--GDDSN 868 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 + + + + R+ GDK + RHG KGV S+ P DMP+ E+G D+++NP Sbjct: 869 EQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAF 928 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG +E+ G A G ++ + E Sbjct: 929 PSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQ------------------------- 963 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 TP E L G +Y G TGE+ Sbjct: 964 -------------------DTPA------DYFGEQLLKAGYNYHGNEPMYSGATGEELRC 998 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 999 DIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGT 1058 Query: 1284 AYTLQEMLTVKSDDVNG-------------------------RTKMY------------- 1305 ++ LQ+ L SD R + Sbjct: 1059 SFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRCAVSLDKYEGYAAD 1118 Query: 1306 ---------KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K V G+ +P L E+ ++GI + E Sbjct: 1119 SDIWEDGHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKMRYNVE 1164 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 127/958 (13%), Positives = 264/958 (27%), Gaps = 201/958 (20%) Query: 24 VPYLLSIQLDSFQKFIE-------QDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLG 76 + ++ + SF ++ G + F + +++ S +L Sbjct: 28 LKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGTKTIFDTPETSGRLGNKLKIRVDSVQLA 87 Query: 77 EP------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 +P EC+ R VTY + L + + + + E + Sbjct: 88 KPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDGEEVSEVREA-------- 139 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G+IP+M + + SP ++ + G Sbjct: 140 GQIPIMLKSNRCHL----------EKLSPNQLVEAKEESDELGG---------------- 173 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + ++ KL +I++ N+ I F + + + P+ Sbjct: 174 ----------YFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPD 223 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 + + +G V R + Sbjct: 224 QTSQTNVLHYLN-DGNVTFRFSWRKNEFLV------------------------------ 252 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 ++ A ++ + + + D + T + + L Sbjct: 253 PVVMILKALIETNDREIFDGIVGNDTENSFL-----TDRLELLLRTYKTYNLYSQQETLA 307 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 + R D+S + K + + Sbjct: 308 YLGDKFR-----------------VVFGASPDMSDIEVGKEVLKRIVLVHLPNNTDKFRM 350 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----- 479 ++ +++KL + G D+ D ++ + G + + + + +K ++ Sbjct: 351 LLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDIN 410 Query: 480 -----SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-SQ-------------FMDQNNP 520 + D + + I ++ F + L SQ ++ N Sbjct: 411 RGVGINFDDRKYMTRVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF 470 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 I+H R + G E VR + P +G +CP+ TP+G GL+N LS + Sbjct: 471 YRFISHFRMV---HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCK 527 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 + K + +A + +G V Sbjct: 528 IATEASDVSQVPKALTQLGVLPADSFAA--------GPNLCCVQLDGRIVGWT-----TH 574 Query: 641 ESSLFSRDQVDYMDVSTQQ--VVSVGASLIPFLEHDDANRALM---GANMQRQAVPTLRA 695 E D + Y V+ + + +P + + M R Sbjct: 575 EQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGGRSRMMRPVRYLPLD 634 Query: 696 DKPLVG-----------TGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNED 739 + +VG T E + S ++ + + D ++ + + Sbjct: 635 KEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQC 694 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 +M G L RS+ Q P+ + + L D D G N Sbjct: 695 QMGKQTMGTPGTALV--HRSDNKLYRLQTGQ----TPIVKAN-LYDDYGMDN--FPNGMN 745 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT----ADIP 855 VA + + GY+ +D++++++ + + ++ + IT Sbjct: 746 AIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGTD 805 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVG-----------KVTPKGETQLTPEEKLL 902 EA KLD G+ IG +V GD +V K E E KLL Sbjct: 806 EWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPGYIEEVKLL 863 >UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bilateria RepID=Q7Q416_ANOGA Length = 1089 Score = 316 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 121/806 (15%), Positives = 251/806 (31%), Gaps = 80/806 (9%) Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPAT 207 Q S F + D K + + + + + +L+ D + + P Sbjct: 36 QHIDSFNYFINVDIKKIVQANQEVKSDADPCFYLKYLNVHVGKPDVEEGFNNTKSTTPHE 95 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET----------------- 250 LR + Y+ +D+ + + + N L + +P LR Sbjct: 96 CRLRDMTYSAPITVDIEYTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLSKVNEC 155 Query: 251 -----ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I KV + + + + I +D +I+ V + ++ + Sbjct: 156 PMDPGGYFIIRGTEKVILIQEQLSWNKMIT---EDYNGVIQCQVTSSTHEKKSRTILLTK 212 Query: 306 TGELICAAN----MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTND 358 G N +L + + + I L D + + +L Sbjct: 213 HGRYYLKHNSMTEEIPVAIILKAMGIASDQEIMQLVGIDPETQKRFAPSLLEAANHKVFT 272 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + AL + + R + E R L+ + Sbjct: 273 QQRALEYMGSKL----IAKRFTTAATKYKTTADEARDLLATTILAH------VPVPSFNF 322 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK-- 476 + + ++++++ + VDD D+ GN+R+ G + F R +K Sbjct: 323 QVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKMI 382 Query: 477 --ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRIS 531 + + + I+A ++ + +F M++ ++ IS Sbjct: 383 ADKNIPKIKAAQFDVGKHMREALITAGLETAISTGNWTIKRFKMERAGVTQVLSRLSYIS 442 Query: 532 ALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 ALG + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 443 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-V 501 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 E P ++ ++I L N + + G+ + + R E Sbjct: 502 DEEPVIRLAYNAGVEDIRLLGGETINNPKV----FMVFINGNILGVTIAYRRLVEVFRMM 557 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 R + + + + R + R + + ER Sbjct: 558 RRRGLIGAFVSIHTSFTQRCVYIHTDGGRLCRPYIIVQAGRPLYLDVNEENDSFIAYQER 617 Query: 707 AVAVDSGV-------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + + T + G+V Y ++ + M G+ + I + R Sbjct: 618 DIDPEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM--GKQAMGIIGYNQKNRI 675 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 + V P+ R + T+ +L GQN VA M ++GY+ ED+++++ Sbjct: 676 DTLMYN----IVYPQSPMVRSRTI---ELTNFDKLPAGQNATVAVMSYSGYDIEDALILN 728 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLG-----PEEITADIPNVGEAALSKLDESGIVYIG 874 + + + + C + + + A LD GIV G Sbjct: 729 KASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDGVTGKIIAKHECLDTDGIVSPG 788 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEK 900 +T +V K P ++ E+K Sbjct: 789 ERLTCKQTMVNKEMPAVKSNNPIEQK 814 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 86/444 (19%), Positives = 157/444 (35%), Gaps = 77/444 (17%) Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE--KDKRALEIEEMQLKQAKKDLSEELQI 966 + + V S + +++ R K + + Q + ++ Sbjct: 707 QNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKD 766 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 G L G+ + + + + + ++ + + Sbjct: 767 GVTGKIIAKHECLDTDGIVSPGERLTCKQTMVNKEMP-------AVKSNNPIEQKESGQQ 819 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 + R ++ ++ +VK+ L RR + GDK + RHG KGV I ED+P Sbjct: 820 PIAYSARVLVSTNNEEEF----LVKILLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDLP 875 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 +++ G D ++ H + +G + Sbjct: 876 FNDYGMSPD---------------MVMNPHGFPSRMTVGKTL------------------ 902 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 E++ + +G F G+K +++++ L Sbjct: 903 ---------------------ELLGSKAGVLEGKFHYGTAFGGSKCSDLQDELFNHGFNY 941 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 G+ Y G TGE E + G +Y KL H+V DKMHAR+ G +++T+QP G+++ G Sbjct: 942 LGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREG 1001 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQME 1316 G R GEME L +YGA+ + E L + SD DV N Sbjct: 1002 GLRLGEMERDCLISYGASMLIMERLMISSDAFDVDVCNVCGRLAYSSWCHNCRSSASVST 1061 Query: 1317 PGMPESFNVLLKEIRSLGINIELE 1340 MP + +L +E+ S+ I L+ Sbjct: 1062 ISMPYACKLLFQELTSMNIVPRLK 1085 >UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular organisms RepID=Q67ZK6_ARATH Length = 639 Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 91/436 (20%), Positives = 164/436 (37%), Gaps = 74/436 (16%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV--EAEKLDK 991 + ++ +A M + + E+ ++ ++ ++ G + K+D Sbjct: 249 YNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDS 308 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L D + +G + + E +K + ++ ++ ++ D+ Sbjct: 309 LEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDE----GKNF 364 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V L R GDK + HG KGV+ + ++ P+ G DIV+NP PSR Sbjct: 365 AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 424 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+LE L I ++++ A + + A Sbjct: 425 GQLLEAALSKG-------IACPIQKEGSSAAYTKLTRHA--------------------- 456 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 F EI E L G R+Y+GR+GE + +G Sbjct: 457 ---------------TPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGP 501 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E Sbjct: 502 TFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHE 561 Query: 1290 MLTVKSD----DVNGRTK-------------------MYKNIVDGNHQMEPGMPESFNVL 1326 L SD + + K + V +H + +P +L Sbjct: 562 RLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLL 621 Query: 1327 LKEIRSLGINIELEDE 1342 +E+ S+GI + + E Sbjct: 622 CQELFSMGITLNFDTE 637 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 58/343 (16%), Positives = 110/343 (32%), Gaps = 66/343 (19%) Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 FV +L + R + E + D D + ++ + L+ L + + L + Sbjct: 56 SFVAELKSRRRQSELPREMEIKRD-KDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQ 114 Query: 688 QAVPTLRAD-------------------------KPLVGTGMERAVAVDSGVTAVAKRGG 722 L +P + T E ++ GV+ Sbjct: 115 YPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCA----- 169 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 VV + + + + + + I + R + + P L Sbjct: 170 VVPFANHDHGRRVLYQSQKHCQ-QAIGFSSTNPNIRCDTLSQQLFYPQKPL------FKT 222 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR- 841 LA L GQN VA GYN EDSI++++ ++ F + I+ Sbjct: 223 LA-SECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDA 281 Query: 842 ----DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 K E + + + L++ G +IGA ++ GDI++G+ T G Sbjct: 282 KDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG------ 335 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 D S+++ + G V V + + D + Sbjct: 336 ----------------ADHSIKLKHTERGIVQKVVLSSNDEGK 362 >UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Tax=Sarcocystidae RepID=RPOB_TOXGO Length = 1051 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 163/780 (20%), Positives = 307/780 (39%), Gaps = 42/780 (5%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD--IEANGK 260 K+ L + Y I K + L+ L + + K Sbjct: 62 KVNNINFLDNVQYINSLIKIFLPLKFQNLKTNKVFFKNLLIFELPKYNSYNYCYLNGLKK 121 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 +++ K + K I + +D ++ + L + Sbjct: 122 IFISKYFTSNGIFFNKYLKRKYN-IYYAKLLLTNSNFFNIILDLKLKQIYLSIKN-LKFN 179 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + L G K + L + + + + D ++ I + + Sbjct: 180 FILFLYYLGIKNTDILKYSRYKNSKILKLLIFSALQTDLVNNKKIILKNL---------N 230 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 L Y + + K N + L D I ++ L+D+++ K Sbjct: 231 YLKSIFKLTILNKNYKNFIISKDKLNYNYG---DFSKNNLLIIDFIFILDLLLDLQSKKL 287 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA 500 IDHL N+ I ++G ++ F+ L + + + L L + Sbjct: 288 CFKTIDHLDNKHINTIGNYFQHNFKFYLKKFISIIPNLIKLQKFSLLKVYN--------- 338 Query: 501 AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 KE + L Q+++Q N SE+ HK +++ + + +R++ G++C Sbjct: 339 -FKELLILNPLIQYLEQINSFSELMHKYKLNNYN----SFSKGILNLREICLNQLGKLCL 393 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN 620 I+T EG N GL+ S + + + + G ++ + + + +++ +++++ Y+I N Sbjct: 394 IDTTEGINCGLVVSFAKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQELYLIQFNN 453 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 NL + + + + +K + + + + S +LIPF++++D R L Sbjct: 454 INLRKIKYLMN-VRLVYNKNNFRIKFFSNKKSILLEFTDLFSFTENLIPFIKYNDPARCL 512 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 MGA MQ Q+VP L K V TG E+ + S T A + G+V + +I IK + Sbjct: 513 MGAKMQSQSVPLLNKKKSFVITGYEKEIITKSDTTIKALQEGIVLNASSLKIHIK----D 568 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 ++ E +Y L+KY +SNQNT I+Q P V GE V +L E A+G N+ Sbjct: 569 LFNREI---VYYLSKYKKSNQNTIIHQKPLVWNGERVFTNQLLTQHQDIIDSEFAIGNNL 625 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV-SRDTKLGPEEITADIPNVGE 859 + + GY+FED+++VS+RV+ + F+++H+ + + E T +IP Sbjct: 626 LFYYGNFCGYDFEDAVIVSKRVLYQQLFSSLHMDIYEFNFCYNNENDIEFSTLEIPKQSY 685 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEKASDVKDSSL 918 LD GI+ G ++ G IL+ K+ K KL+ +IFG+ ++KD+SL Sbjct: 686 YIKKNLDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSL 745 Query: 919 RVPNGVSGTVIDVQVF--TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + G SG V +++F K K K + G + Sbjct: 746 YIQTGKSGRVSKIELFLVNISSRHKYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKG 805 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 109/414 (26%), Positives = 173/414 (41%), Gaps = 40/414 (9%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-GVEA 986 + + E D +E + K + L I++ G ++L+ V Sbjct: 658 MDIYEFNFCYNNENDIEFSTLEIPKQSYYIKKNLDSLGIIKEGEKILTGSILLTKIKVAK 717 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + + + + L Q + + +L Sbjct: 718 PTYTYKSIFKLIYSIFGKTIRNIKDNSLYIQTGKSGRVSKIELFLVNISSRHKYKTYNNS 777 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 ++++ +R + GDK+ GR+GNKG++S I D+P+ +N DI++ LG+PSR Sbjct: 778 YLKCRIFICKQRFLTVGDKLCGRYGNKGILSYIAENADLPFLQNSFYPDIIVGALGIPSR 837 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQ+ E +G + +I Sbjct: 838 MNLGQLFEALVGKISFSYNIRILPSFTTSSN----------------------------- 868 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 L N K + +F+ K K L + G+ + DGRTG + + V Sbjct: 869 -----LYFNYLKILIYNFLMFNNFK----KGFNWLYNFNLPGKFIIRDGRTGVKLKSSVL 919 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G KL HL+ DK+H R+TG Y+ + QQPL GK GGQRFGEME+WALEA+GA+Y Sbjct: 920 CGVSRYSKLIHLIKDKLHFRTTGPYTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYN 979 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIV-DGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 L+E+L KSDD R + + ++ + ESF V+LKE L +N+EL Sbjct: 980 LKEILNYKSDDCFARNNLKEYLLFRNTELQNSTITESFRVILKEFNGLILNLEL 1033 Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 56/431 (12%), Positives = 136/431 (31%), Gaps = 37/431 (8%) Query: 113 TVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 + + + + E+P +NG +++ +S+ S G+FF+ + ++ +Y Sbjct: 91 KTNKVFFKNLLIFELPKYNSYNYCYLNGLKKIFISKYFTSNGIFFNKYLKRKYN----IY 146 Query: 173 NARIIPYRGSWLDFEFDPK-DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE 231 A+++ ++ + D K +++ I + K + L L IL Sbjct: 147 YAKLLLTNSNFFNIILDLKLKQIYLSI-KNLKFNFILFLYYLGIKNTDILKY-------- 197 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 ++ + + + L D+ N K+ ++ + + + + K + + Sbjct: 198 ---SRYKNSKILKLLIFSALQTDLVNNKKIILKNLNYLKSIFKLTILNKNYKNFIISKDK 254 Query: 292 IAGKV----VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 + I + L +++ + +K I T+ + + Sbjct: 255 LNYNYGDFSKNNLLIIDFIFILDLLLDLQSKKLCFKTIDHLDNKHINTIGNYFQHNFKFY 314 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF-FSEDRYDLSAVGRMKFN 406 + N + ++ E E + FSE + F+ Sbjct: 315 LKKFISIIPNLIKLQKFSLLKVYNFKELLILNPLIQYLEQINSFSELMHKYKLNNYNSFS 374 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR-RIRSVGEMAENQFR 465 + +L L K +ID + I G RI G + + F Sbjct: 375 KGILNLREICLNQLGKLCLIDTTE---GINCGLVV-----SFAKHIRIYKKG-IIQVYFS 425 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQ-DMINAKPISAAVK----EFFGSSQLSQFMDQNNP 520 + + D + + Q + IN + I + + ++ F ++ + Sbjct: 426 SIFKNKTKEFLNFKTSLDQELYLIQFNNINLRKIKYLMNVRLVYNKNNFRIKFFSNKKSI 485 Query: 521 LSEITHKRRIS 531 L E T + Sbjct: 486 LLEFTDLFSFT 496 >UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB2_LEPTE Length = 880 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 141/411 (34%), Positives = 216/411 (52%), Gaps = 44/411 (10%) Query: 927 TVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 VI +++ + ++ + L + +++ D + I++ G + + ++V+ Sbjct: 496 VVIGGEIYRPGNKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRP 555 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 + P ++ + L + + D ++ + + D+ Sbjct: 556 IGPHNPTPLEKLVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLPS---DVEYS 612 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 + V+ YL KRRI GDKMAGRHGNKG+IS I P +DMPY +GTPVD+VLNPLGVPS Sbjct: 613 GIGRVEFYLVDKRRIFVGDKMAGRHGNKGIISNILPKQDMPYLPDGTPVDMVLNPLGVPS 672 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RMN+GQ+ ET LG+A K + + G + + + S Sbjct: 673 RMNVGQVFETLLGLAGKYLHQHFKVTPFDE--------------VYGPEASRSLVYSKLY 718 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 + + + + D + G+ R++DG+TG F++ V Sbjct: 719 EARLKT-------------------------DQNWIFDPKSPGKTRIFDGQTGANFDQAV 753 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 T GY YMLKL HLVD K+HARSTG Y+LVTQQP+ G+++ GGQR GEME WALEA+GA+Y Sbjct: 754 TAGYAYMLKLIHLVDHKIHARSTGPYALVTQQPVRGRSRAGGQRLGEMEFWALEAFGASY 813 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 LQEM+T+KSDD+ GRT+++ +I++ PESF V + E+RSLG+N Sbjct: 814 NLQEMMTIKSDDILGRTQVFDSILNSKPIQNSH-PESFRVFINELRSLGVN 863 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 53/122 (43%), Positives = 75/122 (61%) Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 I+ + A + Y L Y RSNQ TCI Q P V LGE V++GD L D ++ Sbjct: 37 KNIIPLNVDKARDVYRAHENSYFLDHYIRSNQATCITQRPSVKLGEWVQKGDFLCDTTAS 96 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 GELALG+N+ VA+MPW+GYNFED+ILV+E ++ D +T++H+++ +T GPE Sbjct: 97 SAGELALGKNILVAYMPWHGYNFEDAILVNETLIIYDIYTSLHLEKFEIEIENTNWGPEI 156 Query: 850 IT 851 I Sbjct: 157 IK 158 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 3/161 (1%) Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 ++ E + V + LD GI+ +G V GDI+V K+ P G TP EK Sbjct: 507 NKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRPIGPHNPTPLEK 566 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI--EEMQLKQAKK 958 L+ AI +K D K+++ P V G ++ +++ + D I E L ++ Sbjct: 567 LVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLPSDVEYSGIGRVEFYLVDKRR 626 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + G I +L + D P D L Sbjct: 627 IFVGDKMAGRHGNKGIISNILPKQDMPY-LPDGTPVDMVLN 666 >UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W234_PYRTR Length = 1167 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 129/864 (14%), Positives = 284/864 (32%), Gaps = 96/864 (11%) Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN- 258 + P LR + Y ++D+ + + +++ +++ +P L+ + + Sbjct: 171 KSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLAGKNDN 230 Query: 259 ------------GKVYVEKGRRITARHIRQLEKDDV------KLIEVPVEYIAGKVVAKD 300 G ++ +G+ QL K+ V +++ V + K Sbjct: 231 DMAVMGECPLDPGGYFITRGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTKT 290 Query: 301 YIDESTGELICAANMELS-LDLLAKLSQSGHKRIETL-------FTNDLDHGPYISETLR 352 Y+ + G + N + ++ + G + + + D+ E Sbjct: 291 YVIQKKGLMYLRHNTLSEEIPIVFVMKALGVASDKEILTMVAGEDSAYQDNFSINFEACA 350 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + + AL I +R + P + Y L A+ + Sbjct: 351 KEEIFTQERALEYIGHRVRLVKKPLGTSR----------NRNYHLEAIECLSNVVLPHVP 400 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 + + + ++++ VDD D++GN+R+ G+M F R Sbjct: 401 VEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRFN 460 Query: 473 --------RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS--QF-MDQNNPL 521 + +K+ + + D ++ I+ V+ + S +F MD+ Sbjct: 461 HDFKLSIDKVLKKPVRAQEFDAFSHFS-VHKNHITMGVERAIATGNWSLKRFKMDRAGVT 519 Query: 522 SEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 ++ I+ALG + R R + P+ +G +C +TPEG GL+ +L+ Sbjct: 520 HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 579 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYVIAQANSNL---DEEGHFV 630 + + P RK+ + +I L+ + EG Y + + + D HF+ Sbjct: 580 LMTHITTEDDDD-PVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTPIAVTDRPKHFL 638 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 R G S F+ +D+ D + + + + + R+ + + + Sbjct: 639 NSFRGLRRMGRVSEFTSIHIDH-DHCEVHIATDEGRICRPMIIVENQRSKVTSRYLKALR 697 Query: 691 PTLRADKPLVGTGMERAVA-VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG-- 747 + + G+ + + T +A + + I E+ P Sbjct: 698 KGTLDFEDFLTRGLVEYLDTNEENDTNIALKE--------TDINQHTTHLEIEPFTILGA 749 Query: 748 -IDIYNLTKYTRSNQNTCINQM-----PCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + + +S +NT M V +P+ + + T +L GQN Sbjct: 750 VAGLIPYPHHNQSPRNTYQCAMDTLLYLMVYPQQPMVKTRTI---ELTKYDKLPAGQNAT 806 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG-PEEITADIPNVGEA 860 VA M ++GY+ ED++++++ +++ + G + I A + Sbjct: 807 VAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLKTYANGTSDRINAGALDPDNK 866 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 + + GI +GA + GD + K P G ++ KD + Sbjct: 867 NHQAIGKDGIAQVGARIEAGDAYLLKSIPVDTA-------------GPPSNTYKDKPEKY 913 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 N + V + + L + + + K S Q GL + + Sbjct: 914 KNPDYSYIDKTCVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPF 973 Query: 981 AGGVEAEKLDKLPRDRWLELGLTD 1004 + P + + Sbjct: 974 NDQGICPDIIMNPHGFPSRMTVGK 997 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 100/493 (20%), Positives = 168/493 (34%), Gaps = 96/493 (19%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEEK-------LLRAIFGEKASDVKDSSLRVPNGVS- 925 E+ IL V + P +P LL + + VK ++ + Sbjct: 740 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMDTLLYLMVYPQQPMVKTRTIELTKYDKL 799 Query: 926 --GTVIDVQVFTRDGVEKDKRALEIEEMQL-----KQAKKDLSEELQILEAGLFSRIRAV 978 G V V + G + + + + Q K +L+ G RI A Sbjct: 800 PAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLKTYANGTSDRINAG 859 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA-----EQYDELKHEFEKKLEAKR 1033 + + + +D ++G E L + + +K + Sbjct: 860 ALDPD--NKNHQAIGKDGIAQVGARIEAGDAYLLKSIPVDTAGPPSNTYKDKPEKYKNPD 917 Query: 1034 RKITQGDDLAPG--VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 + + ++K+ RR + GDK + RHG KG I EDMP+++ G Sbjct: 918 YSYIDKTCVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFNDQG 977 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 DI I+ H + +G + Sbjct: 978 ICPDI---------------IMNPHGFPSRMTVGKMM----------------------- 999 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 E++ + G F G+ ++ ++L +G+ Sbjct: 1000 ----------------ELLSGKAGVLNGTLEYGTAFGGSTVEDMSKILVDKGFSYTGKDY 1043 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 L G TGE + G +Y KL H+V DKMH+R+ G +++T+QP G+A+ GG R G Sbjct: 1044 LTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLG 1103 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EME L AYG G + K + MP + +L++E+ Sbjct: 1104 EMERDCLIAYGGQM--------------GYSGYCKLCESEKAVRKITMPYAAKLLIQELG 1149 Query: 1332 SLGIN--IELEDE 1342 S+ I I LEDE Sbjct: 1150 SMNIKVTIGLEDE 1162 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 70/446 (15%), Positives = 135/446 (30%), Gaps = 60/446 (13%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 R + P L L+ +DS+ F++ + + + RS + L Sbjct: 95 NTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKVNRFVRS-----DFDPKFLL 149 Query: 69 QYVSYRLGEP-------------VFDVQECQIRGVTYSAPLRVKL--------------- 100 +Y R+ P EC++R +TY+AP+ V + Sbjct: 150 EYTDIRVLAPNRQEEDDLDHHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIK 209 Query: 101 --RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFD 158 R+ I + MGE PL G F+ G E+VI+ Q + Sbjct: 210 IGRMPIMLKSNKCVLAGKNDNDMAVMGECPL-DPGGYFITRGQEKVILVQEQLNKNRVIV 268 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNY-T 216 + R + + K +++R + ++P +++AL + Sbjct: 269 ESAKGIMQASVTSSTH----ERRTK-TYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVAS 323 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 ++IL + + + + E + +V + K T+R+ Sbjct: 324 DKEILTMVAGEDSAYQDNFSINFEACAKEEIFTQERALEYIGHRVRLVKKPLGTSRNRNY 383 Query: 277 LEK-----DDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA---KLSQS 328 + +V L VPVE + A + L+ N +L D K + Sbjct: 384 HLEAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLEL 443 Query: 329 GHKRIETLFTNDLDHGP-----YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 + + LF + I + L+ A + + E Sbjct: 444 SGQMLSLLFEDHFKRFNHDFKLSIDKVLKKPVRAQEFDA----FSHFSVHKNHITMGVER 499 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSL 409 +S R+ + G L Sbjct: 500 AIATGNWSLKRFKMDRAGVTHVLSRL 525 >UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MW98_PHYIN Length = 1179 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 92/464 (19%), Positives = 151/464 (32%), Gaps = 97/464 (20%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 P G + V V + G + + + + + + ++ + + Sbjct: 764 YPLGTNAVVA---VISYTGFDMEDAMILNKSSYERGFGHASVYKQLTVDISSNGKQGSAT 820 Query: 980 VAGGVEAEKLD--------KLPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKL 1029 K D KL RD + +G + E ++ E + Sbjct: 821 SKKYFSNIKTDGSGDYCSTKLDRDGFPHIGQVVNHGDPVASWIDETTGLPSVQKHKESEP 880 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 + G+ + + L R GDK + RHG KGV+S + P DMP+ E Sbjct: 881 AIIEQVNMIGNSSSSSEFTKASIKLRFCRNPTIGDKFSSRHGQKGVMSILWPQADMPFSE 940 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 +G DI++NP PSRM +G ++E+ G + Sbjct: 941 SGISPDIIINPHAFPSRMTVGMLIESMAAKTGALKGKYM--------------------- 979 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 D + F E R+ LK G Sbjct: 980 ----------DATPFQFSEKDRV-------------------IDYFGSQLKEHGYNYMGS 1010 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 LY G +G + + +G +Y +L H+V DK R+TG + +T+QP+ G+ + GG R Sbjct: 1011 EPLYSGISGTVMQADIYIGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPVKGRKKGGGIR 1070 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK-------------------------- 1303 GEME +L A+G A+ +Q+ L SD Sbjct: 1071 LGEMERDSLLAHGCAFLVQDRLLNCSDKHIATVCTNCGSLLSNATQRSTVETAGQGEIAV 1130 Query: 1304 --------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 G MP F L E+ ++ I + L Sbjct: 1131 AMKSKTQWYCTVCQTGESCQPVAMPYVFRYLANELAAMNIKMSL 1174 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 118/779 (15%), Positives = 247/779 (31%), Gaps = 98/779 (12%) Query: 341 LDHGPYISETLRVDPTNDRLSALVE-IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSA 399 L LR D N LSA VE I R + TR+ A + F Y Sbjct: 266 LTDREIYERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYDN 325 Query: 400 VGRMKFNRSLL-------REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 + ++ LL + E + + +++KL G D+ D + N Sbjct: 326 MNNVEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYAFAKGDVPEDNADSVMNHE 385 Query: 453 IRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAK-------PISAAVK 503 + G + + L A++ + + + D + + I A+ Sbjct: 386 LLLPGHLYLMIMKEKLQESLVAMRANILKETQNKKRAVVMDQVFLRKMWERTPNIGNAMT 445 Query: 504 EFFGSSQLSQ--------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 F + L ++ N +H R ++ G E VR Sbjct: 446 YFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHFR---SVHRGQFFTEMKTTAVRK 502 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYA----------------QTNEYGFL----ET 589 + P +G +CP+ TP+G GL+N L+V + FL Sbjct: 503 LLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVCHPAFKADDYLQQEVKLARFLASLGMI 562 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE---SSLFS 646 P DG + YL + G + + + + +S E + + S Sbjct: 563 PTSGYADGALIVPYSYLPVMMNGKVLGGAPAEVCKRIAEVLRKVKSAKSSEERDANGIVS 622 Query: 647 RDQVDYM------DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 +V + + + A + ++ D R M++ + + Sbjct: 623 NLEVCLILPTRGGPFPGLYLSADAARMSRPVKQMDTKRIEYIGPMEQVFMDIACTKDDIR 682 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 + + ++ + + D ++ + + +M G +++ RS+ Sbjct: 683 PATTHMEIKPTNM---LSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSIV--HRSD 737 Query: 761 QNTCINQMPCVS--LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 Q P + E + + E LG N VA + + G++ ED++++ Sbjct: 738 NKMYRIQSPQIPIVQNERLREYQL---------DEYPLGTNAVVAVISYTGFDMEDAMIL 788 Query: 819 SERVVQEDRFTTIHIQELACVSRDT-KLGPEEITADIPNV-----GEAALSKLDESGIVY 872 ++ + ++L K G N+ G+ +KLD G + Sbjct: 789 NKSSYERGFGHASVYKQLTVDISSNGKQGSATSKKYFSNIKTDGSGDYCSTKLDRDGFPH 848 Query: 873 IGAEVTGGDILVG---------KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 IG V GD + V E++ E++ +S+ +S+++ Sbjct: 849 IGQVVNHGDPVASWIDETTGLPSVQKHKESEPAIIEQVNMIGNSSSSSEFTKASIKLRFC 908 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--IRAVLVA 981 + T+ D F+ +K ++ + + ++ +S ++ I SR + ++ + Sbjct: 909 RNPTIGDK--FSSRHGQKGVMSILWPQADMPFSESGISPDIIINPHAFPSRMTVGMLIES 966 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 + L D + + +++ E + Q D Sbjct: 967 MAAKTGALKGKYMDATPFQFSEKDRVIDYFGSQLKEHGYNYMGSEPLYSGISGTVMQAD 1025 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 67/433 (15%), Positives = 142/433 (32%), Gaps = 72/433 (16%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF--PIQSYS-GNSELQYVSYRLGEP- 78 + L+S LDSF F+ + GL+ A + P++ + ++ + ++G P Sbjct: 40 KLQKLVSPHLDSFNFFLTE------GLDLAVADMCKVPVELPNQHRMDIWIENAQIGYPT 93 Query: 79 ---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 EC+ RGV+Y+APL V L + G+ + Q V +GEIP+ Sbjct: 94 TENQITGEQKLLPSECRQRGVSYTAPLVVTLA------RSFGGSQNVERLQRV-VGEIPI 146 Query: 130 MTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 M + G F+ NG ER V L + + Sbjct: 147 MVRSKRCHLNGMAPTDLVKAREEANEMGGYFICNGNER-CVRLLQMPRRHHIMAVRRGAF 205 Query: 166 SSGKVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRK---LPATIILRAL-N 214 ++ LY + + + + N VR +++ +P ++L+AL Sbjct: 206 ANRGDLYTELAVFMKCVKRDQSAVTVTVHYLQDGNATVRFGVKKQEFMIPVGLVLKALYP 265 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR-RITARH 273 T +I +E+V+ +N V LR + + R + Sbjct: 266 LTDREI----YERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPY 321 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + + ++ +++ + + EL+C +L Sbjct: 322 VYDNMNNVEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYA---FAKGDVPEDNA 378 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 +++ ++L ++ + + + L A+ + + ++ E Sbjct: 379 DSVMNHELLLPGHLYLMIMKEKLQESLVAMRANILKETQNKKRAVVMDQVFLRKMW--ER 436 Query: 394 RYDLSAVGRMKFN 406 ++ N Sbjct: 437 TPNIGNAMTYFLN 449 >UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QD43_LEIMA Length = 1132 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 129/925 (13%), Positives = 280/925 (30%), Gaps = 105/925 (11%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF---DPKDNLFVRID 199 R+ Q G + + Y +I +D ++ D + V D Sbjct: 76 RICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMI------VDVQYTSRDRSRAMLVEKD 129 Query: 200 RR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 + +P + + N + +L + E F I+ Sbjct: 130 VKIGTIPIMLKSKCCNLYRKTREELV----------------NMRECPLDPGGYFIIKGV 173 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 KV + + ++ R I + ++ V + + ++ + Sbjct: 174 EKVCLVQEQQSKNRVIIEADEHGNISAHV-QSKTHYSISKCAVTFKKGSIVLTHRSFTED 232 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPY------ISETLRVDPTNDRLSALVEIYRMMRP 372 + ++ L G + + + + E R+ + AL I + Sbjct: 233 IPIIVVLKALGLENDQHITQCIGTLPEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKE 292 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 E + + L+ V + +++ + + + +++ + Sbjct: 293 TVWEAEETQQRQVNRSKADKAAEFLANVLLCHIREAQVQK--DWNFRHKAFYVCFMVRGM 350 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQ 490 I+ +D+ D GN+R + G + F L + R VK + L D+ P Sbjct: 351 IEASFDTSLLDERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPF 410 Query: 491 DM-----INAKPISAAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRISALGP-----GG 537 ++ + I ++ G L +F M++ ++ I++LG Sbjct: 411 NVKQLMESKMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASS 470 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 + R R + P+ +G VCP +TPEG + GL+ + + +Q R Sbjct: 471 FEKTRKVSGPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDLNDN-YVRAAAHA 529 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM---D 654 + +EI ++ + +Y N L + L S V Sbjct: 530 LGVEEIDTVTPTDFLHYCTVFLNGTLIGIHRYPNRLCAGIRTLRRSGRLHPHVSISTQPR 589 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG- 713 T Q+ S G ++ L + + + + L + G+ V V+ Sbjct: 590 QRTVQIGSDGGRIVRLLIIVRDGKPAVTSAHLDRLRDRLCTHNDFLAEGLTEYVDVNESN 649 Query: 714 ----------------------VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 ++ + G++ Y ++ + M G+ + Sbjct: 650 DCLIAVYPADIGPYTTHLEVEPLSLLGVVAGIIPYPHHNQSARNTFQSAM--GKQALGTV 707 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 L +Y R++ + P P+ R + T +L G N V M ++GY+ Sbjct: 708 ALNQYIRADTVLLLGAYPQ----RPLCRTKAM---SLTHYEKLGAGINAMVCVMSYSGYD 760 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP-EEITADIPNVGEAALSKLDESGI 870 ED+ + ++ + + +++ G + I N G L+ G+ Sbjct: 761 IEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDVILPPEKNSGTGKFKALNPDGV 820 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 GA V D+LV K TP P + L V Sbjct: 821 AGKGALVQQYDVLVNKFTPVAGGDPRP------------------APLVYKYPQPAVVDH 862 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V + ++ + ++ ++ + + G + ++ + + Sbjct: 863 VIISPPGDYDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERG 922 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLA 1015 P G +L +L Sbjct: 923 MCPDMIMNPHGFPSRMTVGKLLELV 947 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 102/490 (20%), Positives = 167/490 (34%), Gaps = 87/490 (17%) Query: 869 GIVYIGAEVTGGDILV------GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 G V + + +L+ + LT EKL I S + Sbjct: 705 GTVALNQYIRADTVLLLGAYPQRPLCRTKAMSLTHYEKLGAGINAMVCV----MSYSGYD 760 Query: 923 GVSGTVIDVQVFTRDGVE---KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 V + R K +++E+ + L E + + Sbjct: 761 IEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDVILPPEKNSGTGKFKALNPDGV 820 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 G ++ D L G D + + + ++ Sbjct: 821 AGKGALVQQYDVLVNKFTPVAG-GDPRPAPLVYKYPQP---------AVVDHVIISPPGD 870 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D + V + +KV R +PGDK + RHG KGV+ I DMP++E G D+++N Sbjct: 871 YDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMN 930 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G ++ K+ Sbjct: 931 PH----------------GFPSRMTVGKL------------------------------- 943 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 E++ +G F G I + L G+ Y G TGE Sbjct: 944 -------LELVCSKAAALRGSMGDGTAFGGESADSISQQLLSFGYNYHGKDVFYSGITGE 996 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + V G +Y +L H+V DKMHARSTG S++T+QP G+++ GG R GEME + Sbjct: 997 LMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMV 1056 Query: 1280 AYGAAYTLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKE 1329 YGA+ L E L + SD D+ + MP +F +L++E Sbjct: 1057 GYGASNLLNERLLISSDMFTADICHVCGNLGYNNRCTYCKTKGTTSKVNMPYAFKLLIQE 1116 Query: 1330 IRSLGINIEL 1339 ++ +G+++ L Sbjct: 1117 LQGMGVSLRL 1126 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 67/470 (14%), Positives = 136/470 (28%), Gaps = 69/470 (14%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF--RSVFPIQSY-SGNSE 67 RK P ++ + +L+ + SF IE + L+ S I+S + Sbjct: 16 QRKKLEMLPALMGMRGILNHHIASFDHLIEVE------LQRILLNESNVEIKSTVDPDFV 69 Query: 68 LQYVSYRLGEPV-----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 ++Y + R+ P QEC+IR +TY + V ++ +R Sbjct: 70 IRYQNIRICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSR-----AM 124 Query: 117 IKEQEVYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRS 152 + E++V +G IP+M G F+I G E+V + Q +S Sbjct: 125 LVEKDVKIGTIPIMLKSKCCNLYRKTREELVNMRECPLDPGGYFIIKGVEKVCLVQEQQS 184 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA 212 + S V Y S F + +P ++L+A Sbjct: 185 KNRVIIEADEHGNISAHVQSKTH---YSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLKA 241 Query: 213 LNYTTEQ-ILDLFFEKVIFEIRDNKLQMELVPERLRGET--ASFDIEANGKVYVEKGRRI 269 L +Q I F+ E + + + E + E Sbjct: 242 LGLENDQHITQCIGTLPEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEETQ 301 Query: 270 TARHIRQLEKDDVKLIEV----------PVEYIAGKVVAKDYIDESTGELICAANMELSL 319 + R + + + + A G + + + L Sbjct: 302 QRQVNRSKADKAAEFLANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDTSLLD 361 Query: 320 DLL---AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 + K ++ + LF + L + +T + + S + + + Sbjct: 362 ERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPFNVKQLMESKME 421 Query: 377 TREAA-ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + + + R++++ G + L G Sbjct: 422 VIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSF 471 >UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 Tax=Amniota RepID=RPA2_HUMAN Length = 1135 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 106/491 (21%), Positives = 169/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 698 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD-NYPIGTNAIVA---VISYTGYDM 753 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWL 998 + + + + + + ++ + + G++ L KL D Sbjct: 754 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLP 813 Query: 999 ELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G + L E + K+ +D G K V + + V Sbjct: 814 FIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRV 873 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP G P Sbjct: 874 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP------------ 921 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 922 ---SRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 954 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 955 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLR 1003 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QP+GG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 1004 HMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063 Query: 1297 ----DVNGRTKM----------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 V + + +P F + E+ Sbjct: 1064 RSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAEL 1123 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 1124 AAMNIKVKLDV 1134 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 112/837 (13%), Positives = 243/837 (29%), Gaps = 109/837 (13%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + N L E + + + +R + Sbjct: 137 VPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRP 196 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL-- 321 + R V + V E+ A + + + L L Sbjct: 197 KWKTRGPGYTQY-----GVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGF 251 Query: 322 -LAKLSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLSALVEIYRMMRPG 373 L L +I + ++ ++ + + + L + R Sbjct: 252 ALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFR-- 309 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 D Y FN+ + S + + +KL Sbjct: 310 -------------VKLNVPDWYPNEQAAEFLFNQCICIH--LKSNTEKFYMLCLMTRKLF 354 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV------RVERAVKERLSLGDLDTL 487 + G+ D+ D L N+ + + G++ + L ++ K + + ++T Sbjct: 355 ALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTD 414 Query: 488 MPQDMINAKP-ISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISA 532 + ++ + F + L D+ N + ++H R Sbjct: 415 NLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFR---C 471 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 472 VHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIP 531 Query: 593 KVTDGVVTDEIHYLS--------AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 + + I + ++ + D + L + E + Sbjct: 532 ALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDK--DLAPGIADSLRHFKVLREKRI 589 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 +V + ++ + S+ L F R + + ++ + + Sbjct: 590 PPWMEVVLIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIF 647 Query: 705 ERAVAVDS-------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 E V + ++ + + D ++ + + +M G + LT Sbjct: 648 EDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL--LTYQD 705 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RS+ Q P L P + D D +G N VA + + GY+ ED+++ Sbjct: 706 RSDNKLYRLQTPQSPLVRPS-----MYDYYDMDN--YPIGTNAIVAVISYTGYDMEDAMI 758 Query: 818 VSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 V++ + + K G + I L KLD+ G+ +IGA+ Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + GD P L GE + + + V +++V + Sbjct: 819 LQYGD---------------PYYSYLNLNTGESFV------MYYKSKENCVVDNIKVCSN 857 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 D + + I + + + G+ SR+ A + + +P Sbjct: 858 DTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLW---PAEDMPFTESGMVP 911 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 61/250 (24%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVF- 80 + L ++SF GL A +++ P + + + + + + P Sbjct: 35 LQELTRAHVESFNY------AVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVP 88 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 EC+ R TY L + A G K I +Q ++G +P+M Sbjct: 89 KGTICKEANVYPAECRGRRSTYRGKLTADI------NWAVNGISKGIIKQ--FLGYVPIM 140 Query: 131 TDN------------------------GTFVINGTERVIVSQL--HRSPGVFFDSDKGKT 164 + G F+ING E+VI + R+ + K KT Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKT 200 Query: 165 HSSGKVLYNARIIPYR----GSWLDFEFDPKDNL---FVRIDRRRKLPATIILRAL-NYT 216 G Y + R ++ + + F+ LP L+AL +++ Sbjct: 201 RGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFS 260 Query: 217 TEQILDLFFE 226 QI + Sbjct: 261 DYQIFQELIK 270 >UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta RepID=Q9C8S4_ARATH Length = 1114 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 149/456 (32%), Gaps = 76/456 (16%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P G + V + D + E + + +E + + + + Sbjct: 690 PTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSF 749 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 + ++ D +G + E ++ +H K + D Sbjct: 750 RRSTNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVD 809 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLN 1099 + + + R GDK + RHG KGV S++ P DMP++ G D+++N Sbjct: 810 MKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIIN 869 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P PSRM I +LE+ G ++A + E ++ L Sbjct: 870 PHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLL-------- 921 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 ++ +LK G LY G G Sbjct: 922 --------------------------------VDDLGSMLKEKGFNHYGTETLYSGYLGV 949 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +G +Y +L H+V DK RSTG +T QP+ G+ + GG RFGEME +L Sbjct: 950 ELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLL 1009 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTK-----------------------------------M 1304 A+GA+Y L + L SD Sbjct: 1010 AHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVT 1069 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + MP F L E+ S+ I + L+ Sbjct: 1070 CYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQ 1105 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 114/836 (13%), Positives = 230/836 (27%), Gaps = 105/836 (12%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F + +V+ + E +D T +L Sbjct: 105 GYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLY 164 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV------------DPTND 358 N + + L I E+L T Sbjct: 165 YLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQL 224 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 I +R TRE F L V L + Sbjct: 225 VRERAKIILDEVRDLGLFTREQCRKHLGQHFQP----VLDGVAEAVLRDYLFVH--LDND 278 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE----MAENQFRVGLVRVERA 474 + +I +++KL + + D+ D L N+ I G + + L + + Sbjct: 279 HDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSL 338 Query: 475 VKERLSLGDLD-----TLMPQDMINAKP---ISAAVKEFFGSSQLS-------------- 512 +K+ L + + +IN P I +++ + L Sbjct: 339 LKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYT 398 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 ++ N L ++ R A+ G VR + P +G +CP+ TP+G GL+ Sbjct: 399 VQAERLNFLRFLSFFR---AVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLL 455 Query: 573 NSLSVYAQTNEYGFLET---PYRKVTDGVVTDEIHYLSAIEEGNYVIA--QANSNLDEEG 627 N ++ ++ + + K+ VV V A ++ +G Sbjct: 456 NHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDG 515 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 V L + S R +V+ V + + +P + + R Sbjct: 516 QVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDL---EVGYVPTSMGGSYPGLYLASCPAR 572 Query: 688 QAVPTLRADKP---LVGTGMERAVAVDSGVT----------------AVAKRGGVVQYVD 728 P P + G VA + ++ + + D Sbjct: 573 FIRPVKNISIPSDNIELIGPFEQVANPINIIFISTFPATHEEIHPTGMISVVANLTPWSD 632 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 ++ + + +M L R++Q Q P PV R Sbjct: 633 HNQSPRNMYQCQMAKQTMAYSTQALQ--FRADQKIYHLQTPQ----SPVVRTKTYTTYSI 686 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL--- 845 E G N VA + G++ ED++++++ V+ Q D Sbjct: 687 ---DENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFD 743 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG-------DILVGKVTPKGETQLTPE 898 + N E ++D G+ +G ++ D + K P Sbjct: 744 SGSKSFRRSTNKAEHF--RIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPV 801 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 ++ + + +++R + + + D F+ +K + ++ + Sbjct: 802 IVDFVSVDMKSKKHPQRANIRFRHARNPIIGDK--FSSRHGQKGVCSQLWPDIDMPFNGV 859 Query: 959 DLSEELQILEAGLFSR--------IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 I+ F G + + +D P ++ +EE Sbjct: 860 TGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEE 915 >UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 Tax=Fungi/Metazoa group RepID=RPA2_YEAST Length = 1203 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 96/397 (24%), Positives = 144/397 (36%), Gaps = 64/397 (16%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + + + + + I + F E Sbjct: 783 MDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDE-------WPKE 835 Query: 988 KLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 L+KL D +G EE + L + + H E + I GD+ Sbjct: 836 WLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLI--GDESN 893 Query: 1044 P-GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 L+ V + ++R Q GDK + RHG KGV S+ P DMP+ E G DI++NP Sbjct: 894 KFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHA 953 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 PSRM IG +E+ G A G D + Sbjct: 954 FPSRMTIGMFVESLAGKAGALHG-------------------------------IAQDST 982 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + E D E L G +Y G TGE+ Sbjct: 983 PWIFNE-------------------DDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELR 1023 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + VG +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 1024 ADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHG 1083 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 ++ LQ+ L SD + Q P + Sbjct: 1084 TSFLLQDRLLNSSDYTQASVCRECGSILTTQQSVPRI 1120 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 126/920 (13%), Positives = 286/920 (31%), Gaps = 87/920 (9%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 LP + + +L K + + + + +R ++ Sbjct: 161 LPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRM----LIVQRRNHPMA 216 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 R P + V+ D E + ++ Sbjct: 217 IIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVL-HYLNDGQVTFRFSWRKNEYLVPVVM 275 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 L H +F D G + ++ D L + Y ++ + + Sbjct: 276 ILKALCHTSDREIF--DGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDK 333 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD 443 S D+ DL VG+ +R +L + ++ +++KL + G+ D Sbjct: 334 FRVVFQASPDQSDLE-VGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPD 392 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER----------LSLGDLDTLMPQDMI 493 + D ++ + G + + + + + + ++ D + M Sbjct: 393 NPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMR 452 Query: 494 NAKPISAAVKEFFGSSQL-SQ-------------FMDQNNPLSEITHKRRISALGPGGLT 539 + I + ++ F + L SQ ++ N I+H R + G Sbjct: 453 VNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV---HRGSFF 509 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 + VR + P +G +CP+ TP+G GL+N + + + + + + Sbjct: 510 AQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLG 569 Query: 600 TDEIHY-------LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 + L ++ +I + ++ + L + +G++ D Sbjct: 570 VAPASHTFAAGPSLCCVQIDGKIIGWVS--HEQGKIIADTLRYWKVEGKTPGLPIDL--E 625 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAV 710 + L F H R + + ++ + P + + T E V Sbjct: 626 IGYVPPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNV 685 Query: 711 DSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 + ++ + + D ++ + + +M G L RS+ Sbjct: 686 HTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALC--HRSDNKLYR 743 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 Q P+ + + L D D G N VA + + GY+ +D++++++ + Sbjct: 744 LQTGQ----TPIVKAN-LYDDYGMDN--FPNGFNAVVAVISYTGYDMDDAMIINKSADER 796 Query: 826 DRFTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 + + + IT + L KLDE G+ YIG V GD Sbjct: 797 GFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGD 856 Query: 882 IL-------VGKVTPKGETQLTPEEKLLRAIFGEKASDVKD---SSLRVPNGVSGTVIDV 931 + + K K P + G++++ ++ S++ + + D Sbjct: 857 PICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDK 916 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--IRAVLVAGGVEAEKL 989 F+ +K + + + + ++ + ++ I SR I + + +A L Sbjct: 917 --FSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGAL 974 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 + +D + D+ + + + H E G++L + Sbjct: 975 HGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMY-----SGATGEELRADIYVG 1029 Query: 1050 VKVYLAVKRRIQPGDKMAGR 1069 V Y ++ DK R Sbjct: 1030 VVYYQRLRH--MVNDKFQVR 1047 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 98/746 (13%), Positives = 217/746 (29%), Gaps = 144/746 (19%) Query: 28 LSIQLDSFQKFIEQDPEGQYGL------EAAFRSVFPIQSYS---------GNSELQYVS 72 + + SF E G L E P+ S + Sbjct: 42 VQPHIGSFNALTEGPDGGLLNLGVKDIGEKVIFDGKPLNSEDEISNSGYLGNKLSVSVEQ 101 Query: 73 YRLGEP------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 + +P E + R +Y L +KL+ + E V+D Sbjct: 102 VSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDC--- 158 Query: 121 EVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVF 156 G +P+M + G F++NG E++I + + Sbjct: 159 ----GGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHP 214 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPA 206 + + ++ Y+ I R D + + R R+ +P Sbjct: 215 M-AIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPV 273 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD-IEANGKVYVEK 265 +IL+AL +T++ F+ +I + + + LRG + ++ +V Sbjct: 274 VMILKALCHTSD---REIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYL 330 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 G + ++ D+++ + ++ I + KD + L+ SL Sbjct: 331 GDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLV----A 386 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 + + ++ G ++ + + ++ L ++ RM + Sbjct: 387 GECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYM 446 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 + + S + +L+ + +S ++ + V Sbjct: 447 SRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV--- 503 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 R +++ +L L P + P Sbjct: 504 -----HR------------GSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSP-------- 538 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRI-SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 L+ F + ++ + RI S L G+ F P+ +C ++ Sbjct: 539 --CGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAA---GPS----LCCVQI- 588 Query: 565 EGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV----VTDEIHYLSAIEEGNYVIAQAN 620 +G IG ++ + + Y KV + EI Y+ G Y Sbjct: 589 DGKIIGWVSH-----EQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLF 643 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQV----------------DYMDVSTQQVVSVG 664 + + E + +QV +++ + ++S+ Sbjct: 644 GGHS---RMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSIL 700 Query: 665 ASLIPFLEHDDANRALMGANMQRQAV 690 A+L PF + + + R + M +Q + Sbjct: 701 ANLTPFSDFNQSPRNMYQCQMGKQTM 726 >UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 Tax=Coelomata RepID=RPA2_MOUSE Length = 1135 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 106/491 (21%), Positives = 168/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 698 FPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMD-NYPIGTNAIVA---VISYTGYDM 753 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR-AVLVAGGVE--AEKLDKLPRDRWL 998 + + + + + + ++ + LV G + KL D Sbjct: 754 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLP 813 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEF--EKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G E L E + K+ +D+ G K + + + + Sbjct: 814 SIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRI 873 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP G P Sbjct: 874 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFP------------ 921 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 922 ---SRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 954 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 955 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLR 1003 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QPLGG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 1004 HMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063 Query: 1297 DVNGRTKM--------------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 + + +P F + E+ Sbjct: 1064 RSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAEL 1123 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 1124 AAMNIKVKLDV 1134 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 124/840 (14%), Positives = 248/840 (29%), Gaps = 123/840 (14%) Query: 220 ILDLFFEKVIFEIRDNKLQMELVPERLRGET--------ASFDIEANGKVY---VEKGRR 268 I+ F V ++ + +P R+ E F I KV +E R Sbjct: 129 IIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRN 188 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKV-------VAKDYIDESTGELICAANMELSLD- 320 +R K + + Y++ T L EL Sbjct: 189 FPVAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLP 248 Query: 321 ---LLAKLSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLSALVEIYRMM 370 L L +I + + ++ + + + L + Sbjct: 249 LGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECF 308 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 R D Y N+ + S + + Sbjct: 309 R---------------VKLSLPDWYPNVEAAEFLLNQGICIH--LQSNTDKFYLRCLMTR 351 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVRVE-----RAVKERLSL 481 KL + G+ D+ D L N+ + S G++ + + LV ++ RA K +S+ Sbjct: 352 KLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSI 411 Query: 482 GDLDTLMPQD------------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 + + + + S F S L D+ N L ++H R Sbjct: 412 NNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLEDSGLCVVADKLNFLRYLSHFR- 470 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 + G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 471 --CVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFGDTA 528 Query: 590 PYRKVTDGVVT--------DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 + G+ + ++ + D + L + E Sbjct: 529 SIPALLCGLGVTGADTAPCRPYSDCYPVLLDGVMVGWVDK--DLAPEVADTLRRFKVLRE 586 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + +V + ++ + S+ L F R + + R+ + + Sbjct: 587 KRIPPWMEVALIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNV 644 Query: 702 TGMERAVAVDSG-------VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 E V + ++ + + D ++ + + +M G + LT Sbjct: 645 AIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL--LT 702 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 RS+ Q P L P + D D +G N VA + + GY+ ED Sbjct: 703 YQNRSDNKLYRLQTPQSPLVRPC-----MYDFYDMDN--YPIGTNAIVAVISYTGYDMED 755 Query: 815 SILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 +++V++ + + K G + + + + KLD+ G+ I Sbjct: 756 AMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPSI 815 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GA++ GD P L GE + + + V +++V Sbjct: 816 GAKLEYGD---------------PYYSYLNLNTGEGFV------VYYKSKENCVVDNIKV 854 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + D + + I + + + G+ SR+ A + + +P Sbjct: 855 CSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLW---PAEDMPFTESGMMP 911 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 67/455 (14%), Positives = 135/455 (29%), Gaps = 69/455 (15%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY--SGNSELQYVSYRLGEPVF- 80 + L +DSF GL A +++ P + L V + P Sbjct: 35 LQDLTRAHVDSFNY------AALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVP 88 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 EC+ R TY L + A G K I +Q ++G +P+M Sbjct: 89 KGTICKDLNVYPAECRGRKSTYRGRLTADIS------WAVNGVPKGIIKQ--FLGYVPIM 140 Query: 131 TDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHS 166 + G F+ING E+VI + F + Sbjct: 141 VKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRN-FPVAMVRPKWK 199 Query: 167 SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE 226 S + Y + R + + +V + I + L + + F Sbjct: 200 SRGLGYTQFGVSMRCVREEHSAVNMNLHYVEN--GTVMLNFIYRKELFF----LPLGFAL 253 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 K + D ++ EL+ + + ++ +E+G + + L + + Sbjct: 254 KALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVKLS 313 Query: 287 VPVEYIAGKVVAKDYID--------ESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +P ++ A+ ++ +T + M L LA+ + Sbjct: 314 LP-DWYPNVEAAEFLLNQGICIHLQSNTDKFYLRCLMTRKLFALARGECMDDNPDSLVNQ 372 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP-PTREAAESLFENLFFSEDRYDL 397 L G L+ N +S + + + + E +F ++ Sbjct: 373 EVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEY 432 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 + +E SG+ D ++ ++ L Sbjct: 433 -LLATGNLRSKTGLGFLEDSGLCVVADKLNFLRYL 466 >UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VXL3_NAEGR Length = 1069 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 96/453 (21%), Positives = 152/453 (33%), Gaps = 91/453 (20%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL----FSRIRAVLVAGG 983 V+ V +T +E + + E L G + Sbjct: 657 VVAVISYTGYDMEDAMIMNKTSYERGMMHGTVFKTEDIDLTEGTAFLTNRVFDKTEMDSD 716 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 +A++ + L D E+GL +E + + K +++ + Sbjct: 717 YQAKEFEDLDYDGLPEVGLPLDEGSIFANYYDPEKQKFMPMKWKDVDSATVHSVKVIATD 776 Query: 1044 PGVLKIVK---VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 P K VK + + R GDK + RHG KGV+S + P EDMP+ + G DIV+NP Sbjct: 777 PSDYKKVKHASITFRLNRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTDGGIVPDIVINP 836 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 PSRM IG ++E+ A G D Sbjct: 837 HAFPSRMTIGMLVESMSSKAGALHG-------------------------------YFPD 865 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + FS E + E LK G +Y G G Sbjct: 866 ATPFSFSE-------------------ENTAVDHFGEQLKKAGYNYHGNEVMYSGALGTT 906 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + + +G +Y +L H+V DK R G + +T QP+ G+ + GG R GEME AL A Sbjct: 907 LKADIYMGVVYYQRLRHMVSDKYQCRVGGPTNAITHQPVKGRKKAGGVRMGEMERDALVA 966 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKN--------------------------------- 1307 YGAA +++ +D N Sbjct: 967 YGAAAVVKDRFFDCTDSSTAIVCTCCNQMNTIVKPDMGTGSGPIVSGSGIGANLDELLCC 1026 Query: 1308 -IVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 H +P + L E+ ++G+N+++ Sbjct: 1027 VCKTNQHLRTIYIPYTTKYLHSELAAMGVNLKI 1059 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 121/966 (12%), Positives = 286/966 (29%), Gaps = 116/966 (12%) Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 G L K+ I+R + + ++ L K + + + Sbjct: 12 NYGGSLKATILLKNEETGAIERIPDIQLMEDFPVMINSSFCNLPKLSPKQKMLQGEEEHE 71 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRIT-ARHIRQLEKDDVKLIEVPVEYIAGKVV 297 E + + R + + + + + + ++V Sbjct: 72 SGGYFVVRGSEVVYRLLTQQRANFPFAITRPSWMGYKEDFTDKGILVRCRHPKTLITRLV 131 Query: 298 AKDYIDESTGELICAANMEL--SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 Y G + A + ++++ L LF Sbjct: 132 NIHY--RRDGVVFMRAGNPVPFYINIVLALKALRECSDRDLFLL----------LTAGTK 179 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 L +VE+ R P + +++ G + + + ++ Sbjct: 180 NKVTLDRVVELLGDFRKTFPTVQTREDAII------ALGTIYDPHGLRRLEEPVDKNKLI 233 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 SG D ++ ++KL +G+ +++D N + +VGE+ N + + + Sbjct: 234 KSGYEKFDFLVYCVQKLYKFVDGEIAEENLDDFDNHELLTVGEVLSNVIPLIIYNKIQLA 293 Query: 476 K---ERLSLGDLDTLMPQDM--------------INAKPISAAVKEFFGSSQLSQF---- 514 +L + T+ P + I +K + F +S Sbjct: 294 HGTCAKLLMKSATTMQPDMLEQKYLALFRDKCKSILSKACPNDINRLFSVGDVSVSAPFR 353 Query: 515 ------------MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 +++ N L I+H R A G + +R + P+ +G +CP+ Sbjct: 354 PELSQTRALFTKLERINFLRVISHFR---ATHRGIAFLDSNSTRMRRLTPSFWGFICPVH 410 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV--------TDEIHYLSAIEEGNY 614 +P+G GL+N LS + + R V + + T++ +S +E Sbjct: 411 SPDGHLCGLVNHLSQTTEIVTHQAKPKELRSVVEMCLKLGMLPSSTEKCISVSIEDEAPV 470 Query: 615 VI---AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV---------DYMDVSTQQVVS 662 ++ + D+ + + L C+ G+ L ++ D + + + Sbjct: 471 MLDGAIIGKVSHDKLQNLADQLRYCKVSGKYGLPKFMEIACQPKYSAMDIPYLPQLNIFT 530 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 A + + + + + ++ + + + + ++ G Sbjct: 531 DIARAVRPVRYLPTGQDEWIGSAEQVFMNIAVTVEDIKPNTTHMEIDP---TNFMSFLGN 587 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSLGEPVER 779 + + + ++ + + +M +++ R + + Q P R Sbjct: 588 LTPFCNFNQSPRCIYQCQMAKQSMAAVFHSVD--HRVDTKLFDMKLPQKPL-------TR 638 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 D P E G N VA + + GY+ ED++++++ + + Sbjct: 639 TKHQTDLP---FDEFNNGCNAVVAVISYTGYDMEDAMIMNKTSYERGMMHGTVFKTEDID 695 Query: 840 SRDTKLGPEEITADIPNVGEA----ALSKLDESGIVYIGAEVTGGDILVG-------KVT 888 + D + LD G+ +G + G I K Sbjct: 696 LTEGTAFLTNRVFDKTEMDSDYQAKEFEDLDYDGLPEVGLPLDEGSIFANYYDPEKQKFM 755 Query: 889 P---KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 P K T + A VK +S+ + + D F+ +K + Sbjct: 756 PMKWKDVDSATVHSVKVIATDPSDYKKVKHASITFRLNRNPIIGDK--FSSRHGQKGVLS 813 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + + ++ I SR+ ++ + ++ + Sbjct: 814 ILWPQEDMPFTDGGIVPDIVINPHAFPSRMTIGMLVESMSSKAGALHGYFPDAT-PFSFS 872 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 E+ ++ EQ + + + G L + V Y ++ DK Sbjct: 873 EENTAVDHFGEQLKKAGYNYHG--NEVMYSGALGTTLKADIYMGVVYYQRLRH--MVSDK 928 Query: 1066 MAGRHG 1071 R G Sbjct: 929 YQCRVG 934 >UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=Q9FXG4_ARATH Length = 1233 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 149/456 (32%), Gaps = 76/456 (16%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P G + V + D + E + + +E + + + + Sbjct: 809 PTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSF 868 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 + ++ D +G + E ++ +H K + D Sbjct: 869 RRSTNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVD 928 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLN 1099 + + + R GDK + RHG KGV S++ P DMP++ G D+++N Sbjct: 929 MKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIIN 988 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P PSRM I +LE+ G ++A + E ++ L Sbjct: 989 PHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLL-------- 1040 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 ++ +LK G LY G G Sbjct: 1041 --------------------------------VDDLGSMLKEKGFNHYGTETLYSGYLGV 1068 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +G +Y +L H+V DK RSTG +T QP+ G+ + GG RFGEME +L Sbjct: 1069 ELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLL 1128 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTK-----------------------------------M 1304 A+GA+Y L + L SD Sbjct: 1129 AHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVT 1188 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + MP F L E+ S+ I + L+ Sbjct: 1189 CYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQ 1224 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 123/984 (12%), Positives = 268/984 (27%), Gaps = 173/984 (17%) Query: 151 RSPGVFFDSDKGKTHSSGKVL---YNAR--IIPYRGSWLDFEFDPKDNLFVRIDRRRK-- 203 +P VF + +S K + R I Y G+++ ++ V D+ Sbjct: 96 ENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQ 155 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR-----GETASFDIEAN 258 P ++ + + L K + + R + N Sbjct: 156 FPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRN 215 Query: 259 GKVYVEKGRRITARHIRQLEKDDVK-----LIEVPVEYIAGKVVAKDYIDESTGELICAA 313 ++G A R + D G + G ++ A Sbjct: 216 SFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKAL 275 Query: 314 NMELSLDLLAKLS-----QSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 ++ L+ G + I + +R R + + Sbjct: 276 TNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQ 335 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 F+ + + LS V L + + +I + Sbjct: 336 ---------------HFQPVLDGVKKESLSIVAEAVLRDYLFVH--LDNDHDKFNLLIFI 378 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGE----MAENQFRVGLVRVERAVKERLSLGDL 484 ++KL + + D+ D L N+ I G + + L + + +K+ L + Sbjct: 379 IQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNS 438 Query: 485 D---TLMPQDMINAKPISAAVKEFFGSSQLS--------------QFMDQNNPLSEITHK 527 +I I +++ + L ++ N L ++ Sbjct: 439 KFSFESRKSLLILFSLIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFF 498 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R A+ G VR + P +G +CP+ TP+G GL+N ++ ++ Sbjct: 499 R---AVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDS 555 Query: 588 ETPYRKVTD--------------------------------------------GVVTDEI 603 + R +VT + Sbjct: 556 KGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVV 615 Query: 604 HYLSAIEEGNYVIAQAN-----SNLDEEGHFVE---DLVTCRSKGESSLFSRDQVDYMDV 655 Y+ ++ + + G + R S + + Sbjct: 616 SYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISIPSDNIELI 675 Query: 656 STQQVVSVGASLI-----PFLEHDDANRALMGANMQRQAVP----------TLRADKPLV 700 + V+ ++I P ++ ++ + L + P +L + + Sbjct: 676 GPFEQVANPINIIFISTFPGIQSNEKKKILPNQVFMEISCPDGGNGGRNNSSLATHEEIH 735 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 TGM VA + + D ++ + + +M L R++ Sbjct: 736 PTGMISVVAN------------LTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQ--FRAD 781 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q Q P PV R E G N VA + G++ ED++++++ Sbjct: 782 QKIYHLQTPQ----SPVVRTKTYTTYSI---DENPTGTNAIVAVLAHTGFDMEDAMILNK 834 Query: 821 RVVQEDRFTTIHIQELACVSRDTKL---GPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 V+ Q D + N E ++D G+ +G ++ Sbjct: 835 SSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTNKAEHF--RIDADGLPSVGQKL 892 Query: 878 TGG-------DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 D + K P ++ + + +++R + + + D Sbjct: 893 YPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGD 952 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--------IRAVLVAG 982 F+ +K + ++ + I+ F G Sbjct: 953 K--FSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGG 1010 Query: 983 GVEAEKLDKLPRDRWLELGLTDEE 1006 + + +D P ++ +EE Sbjct: 1011 SLHGKFVDATPFRDAVKKTNGEEE 1034 >UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putative n=1 Tax=Babesia bovis RepID=A7AM79_BABBO Length = 1171 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 125/856 (14%), Positives = 277/856 (32%), Gaps = 121/856 (14%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 ++ + I ++ L+ E+L + + + A + + Sbjct: 185 YDPGGYFIIKGVEKVILMQEQLSKCRVIVETDVKKNIC--------ATVTSATAESKSRT 236 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 V D ++ A + ++ + +G + + Sbjct: 237 AVVYKNQKLYVRHNSFTDDVPLCIILKAMGVTTDEEIAQLIGTAGARE----YLPTGGDY 292 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPT--REAAESLFENLFFSEDRYDLSAVGR 402 E L + N R+ AL+ + R +RP +++ + + R Sbjct: 293 ILSIEDLYNEGINTRMDALLYVGRKVRPRPLAKGFFTSSKERLPKTNQNLIEDTHDILTR 352 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 + + +R + SG + + + ++++ + +GK +DD DH GN+R+ G++ Sbjct: 353 VLLSHIPMRNCRDFSGKIKS--LCLMARRVLSVASGKEPMDDKDHYGNKRLELAGQLISI 410 Query: 463 QFRVGLVRVERAVKERL--------------------SLGDLDTLMPQDMINAKPISAAV 502 F +K+++ D +P D+I + Sbjct: 411 LFEDLFKAFLGQLKKQIDATLTRHYEIVSNCHGGEQAKYPDCLVSLPTDIITRGMQATIS 470 Query: 503 KEFFGSSQLSQFM-DQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRDVHPTH 554 G+ + +F +++ ++ IS L G +T+ + FE R + P+ Sbjct: 471 T---GNWNIKRFRIERSGVSQILSRLSYISCL--GMMTKTNSQFEKGRKVSKPRALQPSQ 525 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSA---IEE 611 G +CP +TPEG + GL+ +LS+ G +E + + + LSA ++ Sbjct: 526 LGLICPCDTPEGESCGLVKNLSLMNHVTTDGDIERLVELLYW-LGVESADALSARDCFDD 584 Query: 612 GNYVIAQANSNLDEEG----HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 V N + ++D+V R +G+ S F +Y + S G L Sbjct: 585 DRNVTVFLNGIIIGVHQNGKQLIKDVVALRRRGKISAFVSVFENYQQ-REVHISSDGGRL 643 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD---------------- 711 L + + L+ + Q V L +G+ + V+ Sbjct: 644 CRPLIVVENGKPLLTPKVLSQLVEGQIPLSKLFASGVLEWIDVNEENNTLIVMRESDITP 703 Query: 712 -------SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 S ++ + G++ + + ++ + M G Y + R + Sbjct: 704 KTTHLEISPMSMLGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIGY--NQLNRCDTILH 761 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 + V P+ + + +L GQN+ VA M + GY ED++++++ + Sbjct: 762 L----MVYPQRPLVTTKAI---QLVNFDKLPAGQNVIVAVMSYQGYEIEDAVVINKASSE 814 Query: 825 EDRFTTIHIQELACVSRD-----TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ++ + + G I NV + L ++ +G +V Sbjct: 815 RGFSRCYSLRRVTVEIEKLNHAAERPGGLNNRPQITNVTP--VDDLTGDSVIGVGQKVKK 872 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 D L+ K+T Q +K + ++ V V T Sbjct: 873 DDTLLKKLTQTSTGQ------------------IKVTDIKYQFNQPAYVDRVMCITTIA- 913 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + ++ L+Q + + G + + + + +P Sbjct: 914 -----ESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLIMNP 968 Query: 1000 LGLTDEEKQNQLEQLA 1015 G ++ +L Sbjct: 969 HGFPSRMTVGKMLELV 984 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 86/424 (20%), Positives = 152/424 (35%), Gaps = 66/424 (15%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 V+ Q + + +A + + ++ E++ L Sbjct: 794 VMSYQGYEIEDAVVINKASSERGFSRCYSLRRVTVEIEKLNHAAERPGGLNNRPQITNVT 853 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 +D L D + +G ++ L++L + + K + + + Sbjct: 854 PVDDLTGDSVIGVGQKVKKDDTLLKKLTQTSTGQIKVTDIKYQFNQPAYVDRVMCITTIA 913 Query: 1048 KIV--KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 + V K+ L R + GDK + RHG KGV+ I E++P+ E+G D++ Sbjct: 914 ESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLI-------- 965 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 + H + +G + Sbjct: 966 -------MNPHGFPSRMTVGKML------------------------------------- 981 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 E++ + G+ F+ I+ L +G+ LY G TGE E + Sbjct: 982 --ELVAAKAAVLNGIFEDGTPFEADSLPAIERSLIKKGFHPAGKEILYSGITGEPLETLI 1039 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G MY KL H+V DK+HAR+ G +T+QP G+++ GG R GEME L AYGA+ Sbjct: 1040 FTGPMYYQKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCLIAYGASG 1099 Query: 1286 TLQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 L E L + SD DV + +P + +L +E++++ I Sbjct: 1100 LLVERLMLSSDVFQMDVCHQCGFIGYDGWCAYCKQRGQTATVAIPYACKLLFQELQAMNI 1159 Query: 1336 NIEL 1339 + Sbjct: 1160 RPNV 1163 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 54/331 (16%), Positives = 103/331 (31%), Gaps = 56/331 (16%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFI--EQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 I+ + P + + + ++S+ F+ E +S + Sbjct: 36 IKDKWKILPCYMGMRGIARQHINSYNNFVLREIKEIVNAPSNKMLKS-----DACKKFYI 90 Query: 69 QYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +++ +GEP Q C++R +TYSAP+ V + E + Sbjct: 91 EFIDINVGEPTMSENNNKPILLTPQLCRMRDITYSAPMYVDVEYYNGE---------GVA 141 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERV--------IVSQLHRSP----GVFFDSDKGKTHS 166 + V +G +P+M + ++G R + S+L P G F K Sbjct: 142 SKRVEIGRLPVMLRSCVCALSGGMRANGNVDNFELSSRLGECPYDPGGYFIIKGVEKVIL 201 Query: 167 SGKVLYNARII-----------------PYRGSWLDFEFDPKDNLFVRIDRRRKLPATII 209 + L R+I S + + +P II Sbjct: 202 MQEQLSKCRVIVETDVKKNICATVTSATAESKSRTAVVYKNQKLYVRHNSFTDDVPLCII 261 Query: 210 LRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 L+A+ T E+I L E L E L E + ++A V + R Sbjct: 262 LKAMGVTTDEEIAQLIGTAGAREYLPTGGDYILSIEDLYNEGINTRMDALLYVGRKVRPR 321 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 A+ K+ + + ++ + Sbjct: 322 PLAKGFFTSSKERLPKTNQNLIEDTHDILTR 352 >UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 Tax=Intramacronucleata RepID=RPA2_EUPOC Length = 1166 Score = 309 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 97/516 (18%), Positives = 174/516 (33%), Gaps = 111/516 (21%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA----SDVKDSSLR-VPNGVSGTVI----------DVQ 932 TP Q + K+ R +F + D + P+G + V D Sbjct: 699 TPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAM 758 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + + E+ + + + S+ + +++ + + + KL+ + Sbjct: 759 IINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENI 818 Query: 993 PRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 D ++G LT + + + ++ +L + + G+D + Sbjct: 819 DPDGLPKIGSQLTKGKPELCIFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSI 878 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 + R GDK + RHG KGV+S + P DMP+ ENG D+++NP PSRM +G Sbjct: 879 GYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMG 938 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 ++++ + G+ Q+ + Sbjct: 939 MLIQSMAAKSGSLRGEFKTVETFQRYD--------------------------------- 965 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 D + L G +Y G G + + +G + Sbjct: 966 -----------------DNDIVGHFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVV 1008 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y +L H+V DK AR TG ++T QP+ G+ + GG RFGEME +L A+GAAY L + Sbjct: 1009 YYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDR 1068 Query: 1291 LTVKSDDVNGRTK--------------------------------------------MYK 1306 L SD G + K Sbjct: 1069 LFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDESNKDTEDKEIHMNEKVICK 1128 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ + +P L E+ S+GI ++ Sbjct: 1129 VCKKNSNCKKVALPFVLRFLANELASMGIKLKFTVN 1164 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 112/776 (14%), Positives = 251/776 (32%), Gaps = 99/776 (12%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYT--TEQILDLFFEKVIFEIRDNKLQMELV 242 + ++D L+ R+RK+ TI L A + ++++D F K+ + + + Sbjct: 77 EIDYDS-HILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNL 135 Query: 243 PERLRGETA-----------SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 + E A F + N KV I ++ + +Y Sbjct: 136 KGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDY 195 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 +D T L ++ +SL L+ + + I L I E + Sbjct: 196 GVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYERI 255 Query: 352 RVDPTN-----DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 N DR+ A++ + + + + +A + + + S + Sbjct: 256 VKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDIDAGDLF 315 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA-----E 461 S S D +I ++ KL + E+D++D + + + G + E Sbjct: 316 LSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQILSE 375 Query: 462 NQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA-------KPISAAVKEFFGSSQL--- 511 F + + + + L + D + +D++ I ++ F + L Sbjct: 376 KLFDCLHINLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGNLISR 435 Query: 512 -----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 D+ N + ++H R ++ G E+ VR + P +G +CP Sbjct: 436 TNLDLMQTSGFCIIGDKLNNIRFLSHFR---SIHRGQYFAEQKTTSVRKLLPESWGFICP 492 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI-----EEGNYV 615 + TP+G GL+N +S+ + K + + ++ +S+ G Y Sbjct: 493 VHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHTGYYP 552 Query: 616 IAQANSNL-----DEEGHFVEDLVTCR-----------SKGESSLFS-RDQVDYMDVSTQ 658 + +L D FVE L + E + + Sbjct: 553 VIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAFIPFSGYSRNLQWPGI 612 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 + S A +++ N + +++ + D+ + + + + ++ Sbjct: 613 FLASTPARFTRPVKNLHYNCIEWISPLEQMNLSIACTDEDITPETTHQELDP---INILS 669 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSLGE 775 V + + ++ + + +M G + R++ P V Sbjct: 670 IVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYH--NHQFRTDNKIYRLLFPHRPIVKTRT 727 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 V D+ E G N VA + + GY+ ED++++++ + + + Sbjct: 728 QV----------DFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKS 777 Query: 836 LACVSRDTKLGPEEITADI-----------PNVGEAALSKLDESGIVYIGAEVTGG 880 ++ + + L +D G+ IG+++T G Sbjct: 778 YTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLPKIGSQLTKG 833 >UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi RepID=Q2TAM4_HUMAN Length = 952 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 106/491 (21%), Positives = 169/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 515 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD-NYPIGTNAIVA---VISYTGYDM 570 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWL 998 + + + + + + ++ + + G++ L KL D Sbjct: 571 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLP 630 Query: 999 ELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G + L E + K+ +D G K V + + V Sbjct: 631 FIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRV 690 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP G P Sbjct: 691 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP------------ 738 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 739 ---SRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 771 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 772 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLR 820 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QP+GG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 821 HMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 880 Query: 1297 ----DVNGRTKM----------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 V + + +P F + E+ Sbjct: 881 RSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAEL 940 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 941 AAMNIKVKLDV 951 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 56/364 (15%), Positives = 116/364 (31%), Gaps = 43/364 (11%) Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK 697 E + +V + ++ + S+ L F R + + ++ + Sbjct: 400 VLREKRIPPWMEVVLIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQI 457 Query: 698 PLVGTGMERAVAVDS-------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 + E V + ++ + + D ++ + + +M G + Sbjct: 458 FMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 517 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 LT RS+ Q P L P + D D +G N VA + + GY Sbjct: 518 --LTYQDRSDNKLYRLQTPQSPLVRPS-----MYDYYDMDN--YPIGTNAIVAVISYTGY 568 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAALSKLDESG 869 + ED+++V++ + + K G + I L KLD+ G Sbjct: 569 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDG 628 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 + +IGA++ GD P L GE + + + V Sbjct: 629 LPFIGAKLQYGD---------------PYYSYLNLNTGESFV------MYYKSKENCVVD 667 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 +++V + D + + I + + + G+ SR+ A + + Sbjct: 668 NIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLW---PAEDMPFTES 724 Query: 990 DKLP 993 +P Sbjct: 725 GMVP 728 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/279 (11%), Positives = 69/279 (24%), Gaps = 32/279 (11%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + N L E + + + +R + Sbjct: 137 VPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRP 196 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL-- 321 + R V + V E+ A + + + L L Sbjct: 197 KWKTRGPGYTQY-----GVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGF 251 Query: 322 -LAKLSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLSALVEIYRMMRPG 373 L L +I + ++ ++ + + L + R Sbjct: 252 ALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGECFR-- 309 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 D Y FN+ + S + + +KL Sbjct: 310 -------------VKLNVPDWYPNEQAAEFLFNQCICIH--LKSNTEKFYMLCLMTRKLF 354 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 + G D+ D L N+ + + G++ + L +E Sbjct: 355 ALAKGGCMEDNPDSLVNQEVLTPGQLFLMFLKGSLPLME 393 Score = 60.2 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 61/250 (24%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVF- 80 + L ++SF GL A +++ P + + + + + + P Sbjct: 35 LQELTRAHVESFNY------AVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVP 88 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 EC+ R TY L + A G K I +Q ++G +P+M Sbjct: 89 KGTICKEANVYPAECRGRRSTYRGKLTADI------NWAVNGISKGIIKQ--FLGYVPIM 140 Query: 131 TDN------------------------GTFVINGTERVIVSQL--HRSPGVFFDSDKGKT 164 + G F+ING E+VI + R+ + K KT Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKT 200 Query: 165 HSSGKVLYNARIIPYR----GSWLDFEFDPKDNL---FVRIDRRRKLPATIILRAL-NYT 216 G Y + R ++ + + F+ LP L+AL +++ Sbjct: 201 RGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFS 260 Query: 217 TEQILDLFFE 226 QI + Sbjct: 261 DYQIFQELIK 270 >UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenophorea RepID=Q236N3_TETTH Length = 1141 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 126/822 (15%), Positives = 257/822 (31%), Gaps = 93/822 (11%) Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 F I+ KV++ + + R + +K+ + V + K + I + Sbjct: 152 RGYFIIKGVEKVFLIQEQLADNRIFIEEDKNKELVANVKSNTVDTKSITSLIIKNHKIYV 211 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLF------TNDLDHGPYISETLRVDPTNDRLSAL 363 ++ + + LL G + + +F + L+ E + + AL Sbjct: 212 KVSSFSKP-IPLLIFFKAYGVESEQEIFQLIGTEEHLLNRLALCLEDIEQSQVYTQQQAL 270 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 + + +RP + E R ++ V Sbjct: 271 EYLSKRLRPKTFQD----KKYSSRNPVDEARDIITNVVLCHIPCKNYNYYP------RAI 320 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + ++LI+ + ++D D+ GN+R++ G E F + V++ LS Sbjct: 321 FLGLMARRLIEALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFNMMVRKELSKEI 380 Query: 484 LDTLMPQDMI----------NAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRI 530 I N I+ + + +F MD + I Sbjct: 381 EKHKNKSYPIKNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQVLARISYI 440 Query: 531 SALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 +A+G + R R + +H+G VCP +TP+G + GL +LS+ A Sbjct: 441 AAIGMMTRMNSQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLMAHITIEE 500 Query: 586 FLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH----FVEDLVTCRSK 639 + + ++I + S+ E E + N + F + L R + Sbjct: 501 KKNV-LSTIALNLGMEDIGHYSSGEIHEDKNYMVFLNGQIIGMHRDPEAFAQKLRFMRRR 559 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR------------ 687 G+ + + + + L L + + L+ + Sbjct: 560 GKIGTTISISTNSEKRAV-YLDTDDGRLCRLLIVVENGKPLITNDHLNDLKEKRKSYLDL 618 Query: 688 ------QAVPTLRADKPLVGTGMERAVAVDSGV-------TAVAKRGGVVQYVDASRIVI 734 + + D + E T + G+V Y ++ Sbjct: 619 IRMGLIEYIDVNEEDNCYIAIKQEDIPNRSKTTHMEIDPLTLLGVVSGLVPYPHHNQASR 678 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + M G+ + I T R + P P+ + V+ + Sbjct: 679 NTFQCAM--GKQALGIIGSTSMNRVDTILYQLIYPQ----TPLLKTKVI---EYAGYDKF 729 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL-GPEEITAD 853 G N +A + ++GY+ ED+ ++++ + T+ ++ + K+ G E+ Sbjct: 730 PAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYETEIQKLKMSGLTELLRG 789 Query: 854 IPNVGEAALSK-----------LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 P E + K LD+ G +GA + GD+L K TP LT E++ Sbjct: 790 PPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGASINNGDVLFNKYTPL----LTLEQQRG 845 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE 962 R I + + G ID + ++ + + E + + K S Sbjct: 846 RDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQDGNVIIKTIVRETRRPEYGDKFSSR 905 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 Q GL + + L P + + Sbjct: 906 HGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMTVGK 947 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 89/425 (20%), Positives = 149/425 (35%), Gaps = 73/425 (17%) Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA------VLVAGG 983 VF + E K + L+ K+ + + + + A +V Sbjct: 764 RTMVFKKYETEIQKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGAS 823 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + L L ++E KKL R I D Sbjct: 824 INNGDVLFNKYTPLLTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQD-- 881 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 I+K + RR + GDK + RHG KG+I I EDMP+ E G Sbjct: 882 --GNVIIKTIVRETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSEKGWVP--------- 930 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 I+ H + +G + Sbjct: 931 ------DLIMNPHGYPSRMTVGKLL----------------------------------- 949 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 E++ + G F G K A++ +L +G+ + G TGE + Sbjct: 950 ----ELLGSKAAVLSGQFKYGTAFGGDKMADLSSILVQNGFSYTGKDVIISGITGEYMQC 1005 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V G ++ +L H+V DK+HAR+ G + +T+QP G+A+ GG R GEME +L A+ + Sbjct: 1006 YVFCGPVFYQRLKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEMERDSLLAFAS 1065 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKN---------IVDGNHQMEPGMPESFNVLLKEIRSLG 1334 + L E L + SD + + + + + MP + +L +E+ S+ Sbjct: 1066 SNLLIERLMISSDKFSVQVCEKCGFIQHTNSCKMCQTDQVSKVVMPYACKLLFQELLSMN 1125 Query: 1335 INIEL 1339 I +L Sbjct: 1126 IKPKL 1130 >UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2EN74_TRIVA Length = 1104 Score = 307 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 98/478 (20%), Positives = 171/478 (35%), Gaps = 74/478 (15%) Query: 889 PKGETQLTPEEKLLRAIFGEKA--SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 P + E K + ++ ++ S + + + GT V V + G + + L Sbjct: 663 PSHREAASTEVKTYHVHYPQRPIVRTMEQDSHALEDFLLGTNACVAVLSYTGYDMEDALL 722 Query: 947 EIEEMQLKQAKKD-LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + + + + S GV + ++ ++ Sbjct: 723 INKCSVERGFGHGCIYKTHRYTAEEIESNSYFCNTKDGVIVDPDLDADGLPFVGQRVSKG 782 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 K ++ E + + + + + IT D VL +V + + R GDK Sbjct: 783 CKLLRVYNPKENKERIMSYKDGEDGFVDKVITTTSDDGKRVLSVV-LKFRMVRTPTIGDK 841 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 + RHG KGV S P E+MP+ ENG D+++NP PSRM IG ++E+ G Sbjct: 842 FSSRHGQKGVFSFPWPQENMPFCENGITPDVIINPHAFPSRMTIGMLIESMCGKLRA--- 898 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + D + F+ +E R+ Sbjct: 899 ---------------------------SQDCAFFDATPFTHDEKNRIT------------ 919 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 E+ ++L G +Y G TGEQF+ + +G +Y +L H+V DK Sbjct: 920 -------DEVGQMLAKEGFEYYGNEAMYSGITGEQFKADIFMGVVYYQRLRHMVGDKYQV 972 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGR 1301 R+TG + +T+QPL G+ + GG R GEME L A G + L++ SD + R Sbjct: 973 RATGKMNNITRQPLKGRKKGGGIRLGEMERDGLLAQGVTFLLRDRFMWCSDGHVAKLCNR 1032 Query: 1302 TK-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P L E ++ I ++ E Sbjct: 1033 CGSFMFTQTKHDENGVEETYCTYCKKSGNCTSVYVPYVLRYLCAEFAAMNIRMKFSTE 1090 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 103/659 (15%), Positives = 204/659 (30%), Gaps = 87/659 (13%) Query: 374 EPPTREAAESLFENLFFS----EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 + TR A F + + + R+L + + D +I + Sbjct: 268 DIHTRAGARDFLGAHFRTVLQCPRHFTNEECCEVLLKRNLFPHLSDEAPSKKFDLLIYMT 327 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV------KERLSLGD 483 ++L+ + G+ D++D + + G + + +A E+ ++ D Sbjct: 328 RRLLQLVKGEILPDNMDANSAHELLTPGTLWLPALSDAITDFLKATAANVYKDEKNAIDD 387 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSS--------------QLSQFMDQNNPLSEITHKRR 529 D L NA + ++ F + LS ++ N + H R Sbjct: 388 FDALQTILKKNASGVENRMRYLFSTGSLRGNSTLGLSQTEGLSIIAERINYCRYLAHFR- 446 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT---NEYGF 586 ++ G VR + P +G +CP+ TP+G GL+ L+ + + + GF Sbjct: 447 --SVHRGAFFTTMKTTAVRYLLPESWGFMCPVHTPDGGLCGLLTHLARFCEIVTGDSQGF 504 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF----VEDLVTCRSKGES 642 E G+V + VI VE L T R KG Sbjct: 505 KEIVQIFTNYGMVP-----FLGSGDMVPVIVDGRVVGSIRERLSSAAVEALKTARRKGII 559 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLV 700 + +++ S S+ FL R + Q Q P + + Sbjct: 560 PKMA-------EIADLPAGSFTRSIYVFLNQQRMMRPVFNVKAQEQEYAGPLEQIFMDIA 612 Query: 701 GTGMERAVAVDSGV--TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 + + A ++ + + D ++ + + +M G + + Sbjct: 613 SNPKDESKAYREIHHTAMLSLIASLTPFSDYNQSPRNMYQCQMAKQTMGYPSHR--EAAS 670 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 + T P + +E+ D + + + LG N VA + + GY+ ED++L+ Sbjct: 671 TEVKTYHVHYPQRPIVRTMEQ-----DSHALE--DFLLGTNACVAVLSYTGYDMEDALLI 723 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 ++ V+ + + + + G LD G+ ++G V+ Sbjct: 724 NKCSVERGFGHGCIYKTHRYTAEEIESNSY---FCNTKDGVIVDPDLDADGLPFVGQRVS 780 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 G KLLR ++ K+ + +G G V V T D Sbjct: 781 KG------------------CKLLRVYNPKEN---KERIMSYKDGEDGFVDKVITTTSDD 819 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 KR L + + ++ G + + P Sbjct: 820 G---KRVLSVVLKFRMVRTPTIGDKFS-SRHGQKGVFSFPWPQENMPFCENGITPDVII 874 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 63/404 (15%), Positives = 116/404 (28%), Gaps = 68/404 (16%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAA---FRSVFPIQSYSGNS-ELQYVSYRLGEP 78 D+ + LS L+SF GL+ F + L +P Sbjct: 13 DLCHFLSPHLESFNW------AVNTGLQKIPEWIPEQFVKRDGDDRILHFHVKELTLTKP 66 Query: 79 ------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 C++ G TY L + L I + + + V IP+M + Sbjct: 67 YDARGNKIYPYMCRLGGQTYGGSLNIILEAAINDLPPKKFS--------VVANNIPVMVN 118 Query: 133 N------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + G F+ +G E+++ + F ++ HS G Sbjct: 119 SDLCHLKGLTPQEKGALMEEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNRPSFHSRG 178 Query: 169 KVLYNARIIPYRG---------SWLDFEFDPKDNLFVRIDRR-RKLPATIILRALN-YTT 217 + +R + + ++ + + I RR +P I+LRAL Sbjct: 179 PT-FTNFATSFRSMAPDCSSITTNVHYQNTGNMVVLIPIQRRMFFVPLPILLRALVEVDD 237 Query: 218 EQILDLFFEKVIFEIRDNKLQMEL-VPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 I + + +++ L L T + + G + + + Sbjct: 238 RTIYESICGQNPDSFYSDRVIATLRYASELDIHTRAGARDFLGAHFRTVLQCPRHFTNEE 297 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAK-----LSQSGHK 331 + +K P D + T L+ E+ D + L G Sbjct: 298 CCEVLLKRNLFPHLSDEAPSKKFDLLIYMTRRLLQLVKGEILPDNMDANSAHELLTPGTL 357 Query: 332 RIETLFTNDLDHGPYISETLRVDPTN--DRLSALVEIYRMMRPG 373 + L D + + D N D AL I + G Sbjct: 358 WLPALSDAITDFLKATAANVYKDEKNAIDDFDALQTILKKNASG 401 >UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa RepID=B9G6G0_ORYSJ Length = 1150 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 152/459 (33%), Gaps = 90/459 (19%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P+G + V + +T +E + + E L A + Sbjct: 726 PSGTNAIVAVLS-YTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTEFFC 784 Query: 981 AGGVEAEKLDKLPRDRWLEL---GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 + + + D + +E+ + L +K + A + Sbjct: 785 KSNLSRDTTAAIESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIK--LKGSEPAAIDYVA 842 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN-GTPVDI 1096 L+ + L R GDK + RHG KGV S++ P DMP+ N G D+ Sbjct: 843 VNGTNFKDRLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDL 902 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP PSRM I +LE+ A G I Sbjct: 903 IINPHAFPSRMTIAMLLESIAAKAGSLKGKFI---------------------------- 934 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 D + F+ R + E+ +L G LY G Sbjct: 935 ---DATPFASSVKER----------------SNSIVDELGPMLASYGFNYHGTEILYSGV 975 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 G + + + +G +Y +L H+V DK R+TG +T+QP+GG+ GG RFGEME Sbjct: 976 FGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRKYGGGIRFGEMERD 1035 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKM---------------------------- 1304 AL A+GA+Y L + L SD DV Sbjct: 1036 ALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKKAKRDMLGLPTVKPP 1095 Query: 1305 ----YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + MP F L E+ ++ I +EL Sbjct: 1096 KNFACQACKTSKGMETVAMPYVFRYLASELAAMNIKLEL 1134 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 87/655 (13%), Positives = 191/655 (29%), Gaps = 117/655 (17%) Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 + I + +R R L+ + + F ++ ++ D V Sbjct: 231 ERAQIILDEVRDLSLFTRTECLLHLGK---------------YFRSVMEGFEKDDFETVA 275 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM-- 459 + + + +I +++KL I + D D L + + G + Sbjct: 276 EAVLKDYIFVH--LQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLIT 333 Query: 460 --AENQFRVGLVRVERAVKERLSLG-DLDTLMPQDMI----------------------- 493 +++ + L + +R + E + D +D I Sbjct: 334 VFLKDRLQDWLRKSKRLIVEEATKNKSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLM 393 Query: 494 -------------NAKPISAAVKEFFGSSQL-SQ-------------FMDQNNPLSEITH 526 + + A++ ++ SQ ++ N I+H Sbjct: 394 RIGAQEVRKFLSKTSAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISH 453 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 R ++ G + VR + P +G +CP+ TP+G GL+N ++ + + + Sbjct: 454 FR---SVHRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYN 510 Query: 587 LET---PYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNLDEEGHFVEDLVTCRSKGE 641 E ++K+ ++ + A ++ +G V + + + + Sbjct: 511 SEGATKDFQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEV 570 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA---LMGANMQRQAVPTLRADK- 697 + L F R L+G + + + + Sbjct: 571 IPEDL-----EVGYVPLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQ 625 Query: 698 -------PLVGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 P G G + + ++ + + D ++ + + +M Sbjct: 626 AFMEIRCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQT 685 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 G L K+ R++ Q P + D E G N VA + Sbjct: 686 MGFCGQAL-KF-RTDVKAFHLQTPQTPIVRTATYSKYCMD-------EFPSGTNAIVAVL 736 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 + GY+ ED++++++ V F Q N+ + + Sbjct: 737 SYTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTEFFCKSNLSRDTTAAI 796 Query: 866 DESGIVYIGAEVTGG-------DILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 + G+ IG + + L G V P P A+ G D Sbjct: 797 ESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDR 851 >UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q27493_CAEEL Length = 1127 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 100/523 (19%), Positives = 166/523 (31%), Gaps = 118/523 (22%) Query: 885 GKVTPKGETQLTPEE----KLLRAIFGEKASD---VKDSSLRVPNGVSGTVIDVQVFTRD 937 G + P + +P ++ + G D+ + ++ ++ + + Sbjct: 650 GNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKY 709 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 +++ + D+ + + I +A V + + R Sbjct: 710 EMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTI 769 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD----------------- 1040 +E K + L + F ++ + GD Sbjct: 770 FYRNPREEIKTVGPDGLPIPG---RRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLV 826 Query: 1041 -----DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 K + ++R GDK A RHG KG+ S + P+E +P+ E G D Sbjct: 827 RIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPD 886 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I+ NP G PSRM IG ++E+ G AA G+ Sbjct: 887 IIFNPHGFPSRMTIGMMIESMAGKAAATHGE----------------------------- 917 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 D S F E D ELL G Y G Sbjct: 918 --NYDASPFVFNE-------------------DNTAINHFGELLTKAGYNYYGNETFYSG 956 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 G Q E + G +Y +L H++ DK R+TG +T QP+ G+ + GG RFGEME Sbjct: 957 VDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMER 1016 Query: 1276 WALEAYGAAYTLQEMLTVKSD----DVNGRTKM--------------------------- 1304 A+ A+G ++ LQ+ L SD R Sbjct: 1017 DAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDY 1076 Query: 1305 -----YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P F L E+ ++ + I+L E Sbjct: 1077 TETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 1119 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 101/725 (13%), Positives = 226/725 (31%), Gaps = 93/725 (12%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEANG 259 K+P + + +L + + E V L +F I Sbjct: 106 KVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIR 165 Query: 260 KVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 K + EKG+ + +R ++++ ++ Y+D T +L E+ Sbjct: 166 KTFKEKGKLFSEFGVMMRSVKENHTAVMM-----------TLHYLDTGTMQLALQFRREI 214 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 L + ++ + + + + G + S ++ + + E Sbjct: 215 FYVPLMYIVKALTDKNDAVISAGFKRGR--------NQDQFYSSCILNMLAQCQEEEILN 266 Query: 378 REAAESLFENLFFSE------DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 +EAA + F D GR +L + + +K Sbjct: 267 QEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEE--KFHTLAYMTQK 324 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMP 489 LI + G+ + D+ + G + R + + V+ +L D ++ Sbjct: 325 LIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFILT 384 Query: 490 QDMI-------NAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKR 528 I I+ + F + L S ++ N L ++H R Sbjct: 385 SAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFR 444 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 A+ G E +VR + P +G +CP+ TP+G GL+N ++ + Sbjct: 445 ---AIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDN 501 Query: 589 TPYRKVT--DGVVTDEIHYLSAIEEGNYVIAQAN-----SNLDEEGHFVEDLVTCRSKGE 641 + + G+ T + L+ E Y + + + L + + Sbjct: 502 SNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKD 561 Query: 642 SSLFSRDQVDYM-----------DVSTQQVVSVGASLIPFLEHDDANRA-LMGANMQRQA 689 + + ++ + ++S LI + + + +G Q Sbjct: 562 ARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYL 621 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 L ++ G M + + + G ++ + D ++ V + +M G Sbjct: 622 SVVLDPEEAEPGVTMHQELHP---SCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTA 678 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 ++ ++R++ Q P + + L ++ E LG N VA + + G Sbjct: 679 VHA--WHSRADNKMYRLQFPQQPMLK-------LEAYEKYEMDEYPLGTNACVAVISYTG 729 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 Y+ ED++ +++ Q I+ + + + + G Sbjct: 730 YDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRN----PREEIKTVGPDG 785 Query: 870 IVYIG 874 + G Sbjct: 786 LPIPG 790 Score = 62.9 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 60/387 (15%), Positives = 127/387 (32%), Gaps = 67/387 (17%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD---- 81 + S +DSF + + + +A F +++ +++ S +L +P D Sbjct: 4 DIASYHVDSFDFLVSKGCQFAA--QAVPAEKFRLKNGD-AVTMKFTSAQLHKPTLDTGAK 60 Query: 82 ---------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 EC+ RG+TY+ L+V + + + E+ +G++P+M Sbjct: 61 LTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDII--------EIILGKVPIMLR 112 Query: 133 N------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + G F++NG+E+VI + F + KT Sbjct: 113 SEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRN-FPIAIIRKTFKEK 171 Query: 169 KVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRKL---PATIILRALNYTTE 218 L++ + R + + + + + RR++ P I++AL + Sbjct: 172 GKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKND 231 Query: 219 QILDLFFEKVIFEI------RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 ++ F++ + N L E L E A I + +V V Sbjct: 232 AVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWED 291 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC--AANMELSLDLLAKLSQSGH 330 + + + + ++ K Y+ + L+ A + S SGH Sbjct: 292 DLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGH 351 Query: 331 KRIETLFTNDLDHGPYISETLRVDPTN 357 + L + + L + Sbjct: 352 ILLLILRERMENIIGMVRRKLEYMSSR 378 >UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4N2L4_THEPA Length = 1235 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 160/439 (36%), Gaps = 75/439 (17%) Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 + + +V + + KD ++ L+ R+ L Sbjct: 839 NSFIYKSKVIDLNSQASSTKERGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGEKLTKNS- 897 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + + K N + +Y E ++ + +IT GD ++ Sbjct: 898 -------------PFYRIEERGKNNIVNDKVVKYTEEPAIVDQITLVGKSEITVGDKISC 944 Query: 1045 GVLKIVK--VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 LK + + L V R GDK A RHG KG++S + P EDMP+ ENG D++ NP G Sbjct: 945 PGLKHDRAIIKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHG 1004 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 +PSRM IG+++E G A G ++ Q + + G + ++VD+ Sbjct: 1005 LPSRMTIGKLIEGMAGKVASIYGKPQDSTCFQ--------AYYSENPENGDEEMEEVDV- 1055 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + L G +Y G G + + Sbjct: 1056 -----------------------------VDYFGKSLIKSGYEYYGTESMYCGTLGTEIQ 1086 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + VG +Y +L H+V DK RSTG +T+QP+ G+ GG RFGEME AL A+G Sbjct: 1087 THIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQPVKGRKNLGGIRFGEMERDALIAHG 1146 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGN---------------------HQMEPGMPE 1321 A LQ+ L SD + + +P Sbjct: 1147 TANLLQDRLLHCSDAHMAYVCPKCGSILSPSISSLEANTKRQVSICTICQVNCKLVTIPY 1206 Query: 1322 SFNVLLKEIRSLGINIELE 1340 + E+ ++ I I+L Sbjct: 1207 VLRYVANELATMNIGIKLH 1225 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 140/1104 (12%), Positives = 322/1104 (29%), Gaps = 167/1104 (15%) Query: 29 SIQLDSFQKFIEQ-------DPEGQYGLEAA--FRSVFPIQSYSGNSELQYVSYRLGEP- 78 ++SF FI+ + Y A +S + ++ +S ++G P Sbjct: 13 ESHVESFNTFIDHYSFNMVNNIPPVYITYNADSLKSFLNPKDTPYYVKVSIISLKIGYPT 72 Query: 79 -----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + +I TY APL V + +E E+ I +EV +G I Sbjct: 73 RPGSECIGTSQKMYPRHAKISHTTYEAPLVVTFGIKFFESES-------IITKEVPVGHI 125 Query: 128 PLMTDNGTFV---INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 P+M + ++G E + + PG +F + + I+P + Sbjct: 126 PIMVRSNRCNLKGLSGEEMIKQGEDADEPGGYF------IIKGNEKMLRQLIVPRSNYPI 179 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 F+ D ++ + T + ++ + I + +V Sbjct: 180 AFKSDSNS--------QKNVLFTEYSIFMRCQSDLDGTCVSNYLHLTINKRCMFRVIVRN 231 Query: 245 RLRGETASFDIEANGKVYVEKG-RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + + A E +R + ++ V + ++ + V D Sbjct: 232 SIVLVPLFLLLRALLPFLSEDEFKRKLLENCSNNQEMTVLYHRIFLDMVQCDPVLSDIDF 291 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 L + L Y + + L Sbjct: 292 IQNRYLY-RLGKACWNQVSQYLHPGSTFE-----ECAHHLIKYFVIIHAKSNLDKFRTLL 345 Query: 364 VEIYRM--MRPGEPPTREAAESLFENLFFSEDRY--DLSAVGRMKFNRSLLREEIEGSGI 419 ++ + G + F+ L Y L + R +E + Sbjct: 346 FMFNKLVNLSNGNIQSESYDSFAFQELLLPGQSYSCILKESLYLSLTRIRTVYNLEINNF 405 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+ + + G G+++++D ++ E R + V Sbjct: 406 LNH---LKGKRGFKRNYAGVGKLENLDQ----------DLEEEMVRKFMNSVNLFNFAIN 452 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 + T ++ E ++ + +D+ N +H R ++ G + Sbjct: 453 KVAPEITKKVHHFLSTGNAFNTHYELNQNTGFALVLDRINYHRFSSHLR---SVHRGNIF 509 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE------YGFLETPYRK 593 + +VR + +G +CP+ TP+G GL+ LS YA+ Y + K Sbjct: 510 MKMRSTQVRKLLGETWGFICPVHTPDGAPCGLLLHLSQYAKPVTTPNKPSYLNSIKSFLK 569 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQA----NSNLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 ++ + ++ + ++ NL++ F + L T ++ + + + Sbjct: 570 SQPLHISGSTNKVNGGNDRIPLVVDGIPISYVNLEDVEEFYDKLKTSKNLEKFGMCRHFE 629 Query: 650 VDYMD-----VSTQQVVSVGASLIPFLEH-DDANRALMGANMQRQAVPTLRAD------- 696 + S+ +++ L+ + + D L+G Q + + Sbjct: 630 TCAIRDKFGVFSSIYIMTFPGRLVRPVRNIKDNQIELIGPITQLWSTIAINEYELNKSHN 689 Query: 697 ------------------KPLVGTG---------MERAVAVDSGVTAVAKRGGVVQYVDA 729 KPL + V +D ++ + + + Sbjct: 690 KLLDLQANPSAMNKVQVPKPLKSLKDNELDNCPVLYEYVELD-MCCILSLSASLTPFSNH 748 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI---NQMPCVSLGEPVERGDVLADG 786 ++ + + +M GI + +++ RS T + Q P V+ E + G Sbjct: 749 NQSPRNMYQCQMLKQSVGIPFH--SQFYRSEVKTYVLTSLQRPLVATKEYEKMG------ 800 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR----- 841 + G N VA + +G++ ED++++++ V F + + Sbjct: 801 ----FQDYPTGVNCVVAIIAHSGFDMEDAMILNKASVDRGLFNSFIYKSKVIDLNSQASS 856 Query: 842 -DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + G E ++ + + KLD G+ +G ++T K EE+ Sbjct: 857 TKERGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGEKLT-----------KNSPFYRIEER 905 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 I +K V + + + + + + + + Sbjct: 906 GKNNIVNDKVVKY--------TEEPAIVDQITLVGKSEITVGDK----ISCPGLKHDRAI 953 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 + + + + + G+ + + D + Sbjct: 954 IKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHGLPSRMTIGK 1013 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAP 1044 L K+ + K Sbjct: 1014 LIEGMAGKVASIYGKPQDSTCFQA 1037 >UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomatidae RepID=Q583H5_9TRYP Length = 1190 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 150/857 (17%), Positives = 277/857 (32%), Gaps = 91/857 (10%) Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 R + P L+ + I+ + ++ ++ + E + F + K Sbjct: 157 REEQPYRTFLQNMELGRIPIM--LKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEK 214 Query: 261 VYVEKGRRITARHIRQLEKDDV-KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 V + + R+ + I+ VE K + E L Sbjct: 215 VLIAQERQAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGH-GYENLL 273 Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD-PTNDRLSALVEIYRMMRPGEPPTR 378 +A++ + D+ I +T+ D L L E TR Sbjct: 274 CRVAQMDEL-IPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTLEIFTR 332 Query: 379 EAAESLFENLFFSED-RYDLSAVGRMKFNRSLLREEIEGSGIL--SKDDIIDVMKKLIDI 435 + A +D R +L + R LL I ++ +L+ + Sbjct: 333 DEALWFIGKRLGKQDSRENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVHRLLLL 392 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL---SLGDLDTLMPQDM 492 G+ E D D LG++RI G + Q LV+V R + + + S + + Sbjct: 393 ALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVVSFGRI 452 Query: 493 INAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISALGPGGLTR 540 ++ + I+ ++ + +SQ +++ S +++ RRI ++ Sbjct: 453 LHNRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQN----PISA 508 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 R++H T +G +CP+ETPEG +IGL+ +L++ + + V + Sbjct: 509 SSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQSRITG 568 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY---MDVST 657 LS + + N L E L+ ++V + Sbjct: 569 FHSIALSDLADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGELSNEVSIVRDIRDRE 628 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +V S G + L + +R + +A + Sbjct: 629 IRVFSDGGRCLRPLFVVEKSR-----------IKLQKAGIGELLEPSTTLGGRREISWNK 677 Query: 718 AKRGGVVQYVDASRIVIK--------------VNEDEMYPG---EAGIDIYNLTKYTRSN 760 + G V+ +D + EM P I + +S Sbjct: 678 VMKKGYVELIDCEEEDSLLIAMVPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSP 737 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRV 802 +NT + M ++G ++ D + +L G N V Sbjct: 738 RNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAIV 797 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP-----NV 857 A ++GYN EDSI++S V+ F ++ + + G E +IP +V Sbjct: 798 AIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREGREM--FEIPDRKVCHV 855 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 A +KLD G++ G V GGDI+VGK P +T L+ E + +D S Sbjct: 856 KRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKT-LSEES-----PVSDTRILKRDCS 909 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + G V V + G K + ++ K S Q G+ R Sbjct: 910 ISSRAAEKGVVDRVMLTENKGNRFTKVRIRTIKI-PNIGDKFCSRHGQKGTNGIQFRQED 968 Query: 978 VLVAGGVEAEKLDKLPR 994 + + L P Sbjct: 969 MPFNHDGISPDLIINPH 985 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 90/468 (19%), Positives = 155/468 (33%), Gaps = 84/468 (17%) Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG-VSGTVIDVQVFTRDGVEKDKRA-LE 947 L + AI + +DS + + G V + E+ KR E Sbjct: 784 MRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREGRE 843 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + E+ ++ + L+ + ++ G + K +P+ EE Sbjct: 844 MFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTL-------SEES 896 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 ++ ++ + +K R +T+ + KV + + GDK Sbjct: 897 PVSDTRILKRDCSISSRAAEKGVVDRVMLTEN-----KGNRFTKVRIRTIKIPNIGDKFC 951 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KG EDMP++ +G D+++ H + + Sbjct: 952 SRHGQKGTNGIQFRQEDMPFNHDGISPDLII---------------NPHAIPSRMTVAHL 996 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 I + + KG + F Sbjct: 997 IETLAGKVA---------------------------------------CYKGGEVYATPF 1017 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + + L L G RLY+G TG + + G Y +L HL DK+HAR Sbjct: 1018 CSVVVEDFGKALTQLKLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARP 1077 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---- 1303 G + +QP G+A GG RFGEME + +YGA+ L+E L SD + Sbjct: 1078 RGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCG 1137 Query: 1304 ------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + +H + MP + +L +E+ S+ I L Sbjct: 1138 TICAADTDQNLYKCQGCDNDSHISQVLMPYACKLLFQELMSMAILPRL 1185 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 55/271 (20%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF----RSVFP---IQSYSGNSELQY 70 L+ Q+DS+ F+ + P L P ++S L Sbjct: 47 ISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQYRLSL 106 Query: 71 VSYRLGEPVFD-------------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 +G P + EC++R +TY A +V L + +Y Sbjct: 107 EDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREE--QPYRT 164 Query: 118 KEQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSP 153 Q + +G IP+M + G F++NGTE+V+++Q ++ Sbjct: 165 FLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQERQAA 224 Query: 154 GVFFDSDKGK-THSSGKVLYNARIIPYRGSWLDFEFDP------KDNLFVRIDR-RRKLP 205 + + K K + + R + + +NL R+ + +P Sbjct: 225 NHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDELIP 284 Query: 206 ATIILRALNY-TTEQILDLFFEKVIFEIRDN 235 ++ RAL+ + ++IL + Sbjct: 285 LFVLFRALDMGSDKEILQTVVPDLKDVAMLE 315 >UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8I793_CHLRE Length = 720 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 96/499 (19%), Positives = 163/499 (32%), Gaps = 110/499 (22%) Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL-- 964 G+ D+ + + + +++ L D+ + + Sbjct: 269 GQATQHRTDTKVYRIQTPQAPICRTIRYAEYKMDEFPNGTNAIVAVLAYTGYDMEDAMIL 328 Query: 965 ------QILEAGLFSRIR---AVLVAGGVEAEKLDKLPRDRWLELGLTDE-EKQNQLEQL 1014 + L + GG + P + G E + + + Sbjct: 329 NKSAVERGLAHASLYKTECVNLKEERGGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSI 388 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAP------------GVLKIVKVYLAVKRRIQP 1062 + + + +G+++A G+ + + L R Sbjct: 389 IWPGQVFYATRDDQSGKSKSHKLKGEEVAVVDQVGVEGRGLGGLPQQANIRLRFNRNPMI 448 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK A RHG KGV+S + P DMP+ G D+++NP PSRM IG ++E+ + Sbjct: 449 GDKFASRHGQKGVLSILWPDTDMPFCAATGIRPDLIINPHAFPSRMTIGMLVESLVSKGG 508 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G ++A Q+ + Sbjct: 509 ALAGQFVDASPFQRADG------------------------------------------- 525 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 V G L+ GQ + G TG++ + +G +Y +L H+V D Sbjct: 526 ----VEKGNATERWGAYLERQGFSRYGQETMISGVTGQEMPCDIYIGPVYYQRLRHMVSD 581 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----D 1297 K RSTG + +T+QP+ G+ GG RFGEME +L A+GAAY L + L SD D Sbjct: 582 KFQVRSTGPINAMTRQPIKGRKFGGGIRFGEMERDSLLAHGAAYLLHDRLHACSDYHVAD 641 Query: 1298 VNGRTK--------------------------------MYKNIVDGNH--QMEPGMPESF 1323 V + G+ +P F Sbjct: 642 VCVSCGSLLAPLRKPAANADVTSNLMLGGGGGEGGGKTVCPVCCPGSSATIERVALPYVF 701 Query: 1324 NVLLKEIRSLGINIELEDE 1342 L E+ ++ I +ELE + Sbjct: 702 RFLAAELAAMNIKMELEIK 720 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 57/412 (13%), Positives = 121/412 (29%), Gaps = 55/412 (13%) Query: 498 ISAAVKEFFGSSQL--------SQ------FMDQNNPLSEITHKRRISALGPGGLTRERA 543 + + + + L SQ ++ N ++H R ++ G E Sbjct: 11 VGSKFEYLLNTGNLVSRSGLDLSQATGFTVVAEKLNFFRYLSHFR---SVHRGAYFAELR 67 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 VR + P +G +CP+ TP+G GL+N + G + V + Sbjct: 68 TTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFTAACSIVTQGSSNEELTSLGIMQVLTAL 127 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 A + + +G V RS ++ ++ + V Sbjct: 128 GMSPAAPALSPPPPPDYLCVQLDGRVVG---HVRSGAAAAALVPYHLEVVHV-------- 176 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 P L + + R P ++ + G V G+ Sbjct: 177 -----PPLLGGPFPGVFLFSQSARMIRPVVQVRGRGLRGGGGERGRKWGCVREWRHGEGL 231 Query: 724 VQYVDASRIVIKVNE-----------DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 + M G R++ Q P Sbjct: 232 SVLHVHPLPRRRPRRQPRPGLHARRAGAMAKQTMGTPGQATQ--HRTDTKVYRIQTPQAP 289 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 + + + D E G N VA + + GY+ ED++++++ V+ Sbjct: 290 ICRTIRYAEYKMD-------EFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHASL 342 Query: 833 IQELACVSRDTK-LGPEEITADIPNVG-EAALSKLDESGIVYIGAEVTGGDI 882 + ++ + G ++ A P+ +++ G+ +G+ + G + Sbjct: 343 YKTECVNLKEERGGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSIIWPGQV 394 >UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 Tax=Eukaryota RepID=RPA2_DICDI Length = 1130 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 106/489 (21%), Positives = 170/489 (34%), Gaps = 86/489 (17%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA-----SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 TP + KL + +K + K P+G + VI V T +E Sbjct: 692 TPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNA-VIAVISNTGYDMEDA 750 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGL---FSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + E L+ GL + V E + D Sbjct: 751 MIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPF 810 Query: 1000 LGLTDEEKQNQLEQLAEQYD----ELKHEFEKKLEAKRRKI--TQGDDLAPGVLKIVKVY 1053 +G + + + + E+ R I G P + + V Sbjct: 811 VGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVK 870 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R GDK + RHG KGV+S++ P +MP+ E+G D+++NP PSRM IG ++ Sbjct: 871 LRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLV 930 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 E G A G + D + F +E Sbjct: 931 EILAGKAGAIHG-------------------------------KFQDATAFQFDE----- 954 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 + E L G ++Y G TG++FE + G Y Sbjct: 955 --------------NNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQ 1000 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 +L H+V DK R+ G + +T+QP+ G+ GG RFGEME +L A+GA++ L + L Sbjct: 1001 RLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMK 1060 Query: 1294 KSD----DVNGRTKM-----------------YKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 SD V K+ + +P F L+ E+ + Sbjct: 1061 SSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAA 1120 Query: 1333 LGINIELED 1341 + I ++L+ Sbjct: 1121 VNITMKLQV 1129 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 117/773 (15%), Positives = 236/773 (30%), Gaps = 107/773 (13%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEANG 259 +LP + R + L + + + E V L A+ + + Sbjct: 120 RLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHR 179 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 K + +G T K+ + + V + + D T E L Sbjct: 180 KAWTNRGPGYT--------KNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFL 231 Query: 320 D---LLAKLSQSGHKRIETLFTNDLDHGPYISETL-------RVDPTNDRLSALVEIYRM 369 LL L + K I + ++++ + +++ N + L I Sbjct: 232 PATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSR 291 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 R A + F F + +GR N+ + + + +I ++ Sbjct: 292 FR---------ARTQFPPSFSNIK------IGRWFINQFVFVHLPNYN--DKYNLLILMI 334 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR--------VERAVKERLSL 481 +KL + GK D+ID + + G + + L V ++ +++ Sbjct: 335 QKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKS 394 Query: 482 GDLDTLMPQDMINAKP-ISAAVKEFFGSSQL--------------SQFMDQNNPLSEITH 526 GD + +++ I+ F + L D+ N L I+H Sbjct: 395 GDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISH 454 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN---- 582 R ++ G +R + P +G CP+ TP+G GL+N LS Sbjct: 455 FR---SIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAA 511 Query: 583 ---EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE-----GHFVEDLV 634 +T I +S + I L + V+ L Sbjct: 512 QDPTVQKAQTLLPSFLAAHGMLPIDMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLR 571 Query: 635 TCRSKG---------ESSLFSRDQVDYMDVSTQQVVSVGAS-LIPFLEHDDANRALMGAN 684 RS G E S V+ S + + GA + P + L+G Sbjct: 572 YLRSMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSGQNELIGPQ 631 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 Q + + + G S + + + D ++ + + +M Sbjct: 632 EQLYMEIAVVPHEVIKGVTTHIET---SPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQ 688 Query: 745 EAGIDIYNLTKYTRSNQNTCI---NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 G +++ R++ Q P V + + G N Sbjct: 689 TMGTPLHSYP--FRTDNKLYKVQNVQKPIVHTKNQFK----------FRCNDYPHGCNAV 736 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD--TKLGPEEITADIPNVGE 859 +A + GY+ ED++++++ + + ++ ++ PN Sbjct: 737 IAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVV 796 Query: 860 AALSK-LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 L K +D G+ ++G + G+ + P Q+T + K + E Sbjct: 797 DELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVR 849 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 75/429 (17%), Positives = 147/429 (34%), Gaps = 66/429 (15%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI--QSYSGNSELQYVSYRLGEP-- 78 ++ L+ +DSF F + G++ + P+ + S ++++ +L P Sbjct: 4 ELKSLIQPHIDSFDFFTDH------GIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTR 57 Query: 79 -------VFDVQECQIRGVTYSAPLRVKLRL--VIYEREAPEGTVKDIKEQE------VY 123 E + G TY+AP + + L V E +GT D +QE V Sbjct: 58 NIVEKEIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVD 117 Query: 124 MGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDS 159 +G +P+M + G F++NG E+V+ + Sbjct: 118 LGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVAL 177 Query: 160 DKGKTHSSGKVLYNARIIPYRGSW---------LDFEFDPKDNL-FVRIDRRRKLPATII 209 + K ++ Y I R L + D + L F+ + LPAT++ Sbjct: 178 HR-KAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLL 236 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 L+AL TTE +E ++ +N + V LR + + +I +V G R Sbjct: 237 LKALKDTTE---KEIYENIVQGDNENTFLTDRVELSLREQKIN-NINTQEEVLDYIGSRF 292 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 AR ++K+ + + Y D+ ++ + + Sbjct: 293 RARTQFPPSFSNIKIGRWFINQFVFVHLPN-YNDKYNLLILMIQKLYAMVGGKCGTDNID 351 Query: 330 HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 + + +G + E L + + L + G+ +A + + + F Sbjct: 352 SPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGD-KLPDALKKVLDKNF 410 Query: 390 FSEDRYDLS 398 DR+ Sbjct: 411 KIADRFSYF 419 >UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=C6LZ34_GIALA Length = 1239 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 146/1066 (13%), Positives = 325/1066 (30%), Gaps = 158/1066 (14%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF-------- 80 LDSF ++ + + + L+ + + Sbjct: 36 KHHLDSFNHLLDVTIPAIIKENPLL-----VVAKHPHFYLRIEKVDVKQVSHGSSKSPGS 90 Query: 81 --------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 EC+ R +TY+AP+ + +R + + + +++ +G IP+M Sbjct: 91 STGGNVGLTPHECRQRNMTYAAPITIDVRCRASNKSSVQ------YYKDICIGYIPIMLR 144 Query: 133 NGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 + ++ R + P G F K+ + + RI+ R + + E Sbjct: 145 SNRCILANKSRKQQAFFQECPDDPGGYFIVRGAEKSILLAEQITMNRIVLGRNTDGNIEV 204 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 N R R + ++ F + NK + +P Sbjct: 205 TVASNTTERKSR--------------------CAVLYKNKKFYLIHNKFNKKPIPIVTIF 244 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV---EYIAGKVVAKDYIDES 305 + F + + + +++ I +Y+A ++V + Y + + Sbjct: 245 KAMGFVNDVTVLSLIGTDQLFLDYMSLSVQECSNDKIYTQEQALKYLADRIVVRTYANTN 304 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 M + +S + + + ++ + SA Sbjct: 305 VNFPTSPVAMTAKASI-----ESARDCLAHFVLSHIPVVERLNLQQVAQNIQPQTSASTA 359 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL---SK 422 + T + ++ S + N + + Sbjct: 360 SNTSVSTHTGTTATSVGGKSGSVSAMAKPAIGSGASVVASNTGSTAPPVNMARFNWLPKA 419 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL- 481 + ++++ I G + D D +GN++I + G++ E F + + ++ + Sbjct: 420 VYLATMVRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMARKVDVI 479 Query: 482 --------GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPL 521 DL +++ I+ A + SQ + + + + Sbjct: 480 LRSDKNRGTDLTNYDVVSLVDPSIITRAFNSAISTGNWKIERIGVDRVGVSQVLSRLSYI 539 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 S + R+S+ + R ++ + G CP +TPEG ++G++ +LS+ A+ Sbjct: 540 STLGQVTRLSS----TFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARI 595 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 ++ ++ K+ + +++ S + + + G ++ Sbjct: 596 SKDENADS-ISKLLMSIGVEDLA--SCWSGDTFSLGYG-YMVFLNGTIKG-VIAKDMLKG 650 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + R +S L F +D+ + + R P L + + Sbjct: 651 FIITLRTFRRKGYIS---------YLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKLK 701 Query: 702 TGMERAVAVDSGV--TAVAKRGGVVQYVD---ASRIVIKVNEDEMYPGEAGIDI------ 750 + + + G V+Y+D A I ++ ++ P +I Sbjct: 702 LTLNDIELLVNNQKCFVDFIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLL 761 Query: 751 ------YNLTKYTRSNQNTCINQMPCVSLG-------EPVERGDVLADGP---------- 787 + +S +N M + G E E L D P Sbjct: 762 GYVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQFERFETAMFLLDYPQRPLTSTKIL 821 Query: 788 -STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 T L GQN V M ++ ++ ED+++++ + + ++ T Sbjct: 822 KLTGYERLPAGQNATVCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAELNSTGSK 881 Query: 847 PEEITADI---PNVGE----AALSKLDESGIVYIGAEVTGGDILVGK---VTPKGETQLT 896 + T D+ P + +++ G+ +GA + GDI++ K VT Sbjct: 882 SVDGTKDVLLGPPKDHLKQYESYHAVEDDGLCAVGAHLKTGDIVINKGRHVTNIPGLSDG 941 Query: 897 PE--EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 PE E L+++ SL+ P + V V T + + L E + + Sbjct: 942 PEAAETLIKSP----------ESLKSPLETITYIDKVLVTTNNDGNLLIKVLTREPRRPE 991 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 K S Q GL + L P + Sbjct: 992 VGDKFSSRHGQKGVCGLIVSQSDLPFTSQGIVPDLIMNPHGYPSRM 1037 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 89/434 (20%), Positives = 161/434 (37%), Gaps = 77/434 (17%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ---ILEAGLFSRIRAVLVAG 982 G + + + ++++ + L KD ++ + +E + A L G Sbjct: 863 GRCSIYRSVSAELNSTGSKSVDGTKDVLLGPPKDHLKQYESYHAVEDDGLCAVGAHLKTG 922 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + K R + + E L + + LK E + +T +D Sbjct: 923 DIVINKG------RHVTNIPGLSDGPEAAETLIKSPESLKSPLETITYIDKVLVTTNND- 975 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 ++KV RR + GDK + RHG KGV I D+P+ G D+++NP Sbjct: 976 ---GNLLIKVLTREPRRPEVGDKFSSRHGQKGVCGLIVSQSDLPFTSQGIVPDLIMNPH- 1031 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 G ++ K+ +L + ++ D + Sbjct: 1032 ---------------GYPSRMTVAKLLELLSNKSS---------------CFRGEQTDGT 1061 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 F + D AE+ + L+ SG+ LY G TG+ Sbjct: 1062 CFRTKT-------------------DEEFIAELYDSLRAAGFSYSGKDVLYSGLTGDVIP 1102 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + G +Y KL H+V DK+H+R TG +++T+QP G+ GG R GEME +YG Sbjct: 1103 VYIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEMERDCAISYG 1162 Query: 1283 AAYTLQEMLTVKSDDVNGRTK--------------MYKNIVDGNHQMEPGMPESFNVLLK 1328 A+ L E + SD+ G ++ +P + ++++ Sbjct: 1163 ASALLLERFMLSSDEFLAYVCEACGLFSYERNGALWCPTCQSGKDVVKIRIPYAAKLMIQ 1222 Query: 1329 EIRSLGINIELEDE 1342 E+ S+G+ + ++ E Sbjct: 1223 ELISMGVLVRMQLE 1236 >UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=B7XI25_ENTBH Length = 1107 Score = 299 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 97/434 (22%), Positives = 173/434 (39%), Gaps = 57/434 (13%) Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 ++P G++ V V + G + + + K + +E +I Sbjct: 719 KIPAGINAMVA---VMSYSGYDIEDAII--------VNKDSIERGFMRVEVYKTIKIEFE 767 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL--AEQYDELKHEFEKKLEAKRRKI 1036 G E +++ +E+G + + ++ ++ + + Sbjct: 768 RFTNGKTEEIYIVNGKEQIIEVGTHVMDGDILITKVSPIDKKLKTVKYKGHPGYIDTIIL 827 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 ++GDD KI+K+ + R ++ GDK + RHG KGV+ I P D+P++E G DI Sbjct: 828 SKGDDD-----KILKIKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEYGVCPDI 882 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP G PSRM +G+ILE G+ Sbjct: 883 IMNPHGFPSRMTVGKILELIGSKVTCLTGEY----------------------------- 913 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 D + F + + + + + + ++L SG+ G Sbjct: 914 --TDATPFENNTADNDLKTIFNTTNQEPLHKEHRQTELLCQILIDHGYSYSGKDVFTSGI 971 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TGEQFE + G ++ +L H+V DK+H RS G +++T+QP G+++ GG R GEME Sbjct: 972 TGEQFEAYIFFGPIFYQRLKHMVADKIHCRSRGPRAVLTRQPTEGRSKDGGLRLGEMERD 1031 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV--------DGNHQMEPGMPESFNVLLK 1328 L YGA L E L SD+ + I+ + MP + +L + Sbjct: 1032 CLIGYGANSLLNERLMHCSDEFDAFICETCGIICYKERCYWCSKKPIIVKMPYACKLLFQ 1091 Query: 1329 EIRSLGINIELEDE 1342 E+ ++ I ++ E Sbjct: 1092 EMMAMNILPKIILE 1105 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 132/910 (14%), Positives = 295/910 (32%), Gaps = 113/910 (12%) Query: 100 LRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDS 159 + I E + ++ Y+ + + + T + N E++I Q R + + Sbjct: 29 IEKEIKEIVQANDIIDSDIDRNFYLRYLNIRVEKPTMIENMVEQIIYPQECRIRDITYAG 88 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTE 218 + +D E+ + ++ + K+P I + TT Sbjct: 89 NIY---------------------VDIEYIKNKEVIIKKNISMGKMPIMIRSSKCHLTTH 127 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 + ++K+ M + L I NG ++ KG Q Sbjct: 128 -------------MLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQS 174 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 K+ + +IE+ + + + ++ +I N + + + + L T Sbjct: 175 KNRI-IIEMGKNGLYTSMTSSSIKHKNKTNVIY-KNDKFYIQNTIFIEDVPI--VLVLKT 230 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 L+ I + + + E+Y E + + Sbjct: 231 LGLNTDEEIVSYIGKEGVELMELSFGEVYEKDIYTETDALIELSKFIKLKSDDNKEIKVK 290 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 ++ K ++ ++ + + +++KLI + + DD D+LGN+R G+ Sbjct: 291 SILAEKLFPNIKIDDDLKN---KGICLCLMIRKLILAKQNLLKPDDKDYLGNKRFELAGQ 347 Query: 459 MAENQFRVGLVRVE--------RAVKERLSLGDLDTLMPQDMINAKPISAAVKE-FFGSS 509 + F + + + +R+ + D L ++ + + G+ Sbjct: 348 LLSILFEDTFKKFNFELKKSIDKILSKRIRTNEFDALTFFNLQTGSITTTLSRAISSGNW 407 Query: 510 QLSQF-MDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIET 563 L +F M+++ +T I+ALG + R R +HP+ +G CP +T Sbjct: 408 NLKRFKMERSGVTHVLTRYSYITALGMMTKINSHFEKTRKVSGPRSLHPSSWGMFCPADT 467 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANS 621 PEG + GL+ +L++ + + + + + + ++ + S N + N Sbjct: 468 PEGESCGLVKNLALLTEISTESDSDI-IKNILQTLGVIKLKFCQESEFYAKNKFMVFING 526 Query: 622 NL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 L + + R +G+ + F + ++ + + + + L N Sbjct: 527 ELFGLTSNIEYLCCAIRKIRREGKINKFVSIFHNKLENAI-YISTDNGRICRPLIIIKKN 585 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS------------------------- 712 + ++ L+ G+ V V+ Sbjct: 586 SNFFTNYQFQCNKIKYKSFNDLLLEGLIEYVDVNEENDCLIALHKSNINNLNIENYTHLE 645 Query: 713 --GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 + ++ G++ + ++ + M G N+ K R + Sbjct: 646 IADYSILSLIAGLIPFPHHNQSPRNTYQCAMGKQAIGHIGTNIKK--RFDLLMLQLNY-- 701 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 P+ +L ++ G N VA M ++GY+ ED+I+V++ ++ Sbjct: 702 --TQRPLSCSKILDIN---KYNKIPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRV 756 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + + G E I N E I+ +G V GDIL+ KV+P Sbjct: 757 EVYKTIKIEFERFTNGKTEEIY-IVNGKEQ---------IIEVGTHVMDGDILITKVSPI 806 Query: 891 GETQLTPEEKLLRAIFGEKASDVK--DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 + T + K D L++ + V F+ +K L + Sbjct: 807 DKKLKTVKYKGHPGYIDTIILSKGDDDKILKIKVRETRCVEIGDKFSSRHGQKGVVGLIV 866 Query: 949 EEMQLKQAKK 958 ++ L + Sbjct: 867 PQVDLPFNEY 876 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 142/478 (29%), Gaps = 81/478 (16%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 +RKD L+ ++SF FIE++ + S N L+Y Sbjct: 1 MRKDGDLVDLFFADKNLVRQHIESFNYFIEKEIKEIVQANDIIDS-----DIDRNFYLRY 55 Query: 71 VSYRLGEPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++ R+ +P QEC+IR +TY+ + V + + + I ++ Sbjct: 56 LNIRVEKPTMIENMVEQIIYPQECRIRDITYAGNIYVDIEYIKNKEV--------IIKKN 107 Query: 122 VYMGEIPLM------------------------------------TDNGTFVINGTERVI 145 + MG++P+M + G F+I G E+VI Sbjct: 108 ISMGKMPIMIRSSKCHLTTHMLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVI 167 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 Q +S + + + + + + +P Sbjct: 168 HIQEQQSKNRIIIEMGKNGLYTSMTSSSIK----HKNKTNVIYKNDKFYIQNTIFIEDVP 223 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 ++L+ L T++ + + K E+ + + A ++ Sbjct: 224 IVLVLKTLGLNTDEEIVSYIGKEGVELMELSFGEVYEKDIYTETDALIELSK-------- 275 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 +L+ DD K I+V D+ + IC M L +LAK Sbjct: 276 --------FIKLKSDDNKEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMIRKL-ILAKQ 326 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 + + L + + L D L + + T E F Sbjct: 327 NLLKPDDKDYLGNKRFELAGQLLSILFEDTFKKFNFELKKSIDKILSKRIRTNEFDALTF 386 Query: 386 ENLFFSEDRYDLSAV--GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 NL LS + E + +L++ I + + I + + Sbjct: 387 FNLQTGSITTTLSRAISSGNWNLKRFKMERSGVTHVLTRYSYITALGMMTKINSHFEK 444 >UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 Tax=Neoptera RepID=RPA2_DROME Length = 1129 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 105/451 (23%), Positives = 163/451 (36%), Gaps = 81/451 (17%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 +++ + GT V V + G + + + + + + + L S A Sbjct: 728 IQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFA 787 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAE-QYDELKHEFEKKLEAKRRKI 1036 + LD L+ Y +K + ++ + + Sbjct: 788 RHPHMPELIKHLD-TDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQ 846 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 DL+P K+V + L V R GDK A R G KG+ S+ P ED+P+ E+G DI Sbjct: 847 LGSFDLSPK--KMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDI 904 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 V NP G PSRM I ++ET G A G+ Sbjct: 905 VFNPHGFPSRMTIAMMIETMAGKGAAIHGNVY---------------------------- 936 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 D + F E + ++L+ G G RLY G Sbjct: 937 ---DATPFRFSE-------------------ENTAIDYFGKMLEAGGYNYYGTERLYSGV 974 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 G + + G ++ +L H+V DK RSTG+ T QP+ G+ + GG RFGEME Sbjct: 975 DGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERD 1034 Query: 1277 ALEAYGAAYTLQEMLTVKSDD----VNGRTK-----------------------MYKNIV 1309 AL ++GAA+ LQ+ L SD V + + Sbjct: 1035 ALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCG 1094 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D + +P SF L+ E+ S+ IN + Sbjct: 1095 DNSSVSMIEIPFSFKYLVTELSSVNINARFK 1125 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 103/682 (15%), Positives = 225/682 (32%), Gaps = 80/682 (11%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-IAGKVVAKDYIDESTGEL 309 F I N K+ I + + + + V +D S Sbjct: 167 GIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVH 226 Query: 310 ICAANM-ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + + +LS I + D Y + +S + + R Sbjct: 227 YLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLR 286 Query: 369 MMRPGEPPTREAAESLFENLF-----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 ++ T +S NLF + V ++ Sbjct: 287 EVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYE--DKFQ 344 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF----RVGLVRVERAVKERL 479 I+ +++KL GK +V+++D + + G + + + +V R ++++L Sbjct: 345 LIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKL 404 Query: 480 SLGDL---DTLMPQDMINAKPISAAVKEFFGSSQLSQ--------------FMDQNNPLS 522 + D +M Q M A + A++ F + ++ + N + Sbjct: 405 TSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMR 464 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++H R A+ G E R + P +G +CP+ TP+G GL+N L++ + + Sbjct: 465 YMSHFR---AIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEIS 521 Query: 583 EYGFLE----TPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNL------DEEGHFVE 631 + P + G++ YL + + E V+ Sbjct: 522 MRPDPKLVKAIPKHLIDMGMMPLSNRRYLG----EKLYVVFLDGKHLGHIHQSEAEKIVD 577 Query: 632 DLVTCRSKG------ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA-LMGAN 684 +L + G E + + + A ++ + + R +G Sbjct: 578 ELRYGKIFGTLPQMMEIGFIPFKK--NGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTL 635 Query: 685 MQRQAVPTLRADK--PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 Q + A + P T +E A ++ ++ D ++ + + +M Sbjct: 636 EQLYMEIAIDAKEMYPDFTTHLELAK-----THFMSNLANLIPMPDYNQSPRNMYQCQMG 690 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 G L ++ Q P L PV ++ D + A+G N V Sbjct: 691 KQTMG--TPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLD-------DFAMGTNAIV 741 Query: 803 AFMPWNGYNFEDSILVSERVVQEDR-FTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 A + + GY+ ED++++++ + + +I+ + + + + P++ E Sbjct: 742 AVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARH-----PHMPE-L 795 Query: 862 LSKLDESGIVYIGAEVTGGDIL 883 + LD G+ + G++++ G L Sbjct: 796 IKHLDTDGLPHPGSKLSYGSPL 817 >UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQY8_ENCCU Length = 1110 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 145/942 (15%), Positives = 300/942 (31%), Gaps = 191/942 (20%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 + L+ ++S+ F++ + + S L+Y+ R+ Sbjct: 10 IKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQIVDS-----DIDHTFYLKYLDIRVAM 64 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P V+ +V Y E ++DI T + Sbjct: 65 PS------------------VEENMVNYNVFPIECRLRDI-------------TYSANIY 93 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 ++ E V Q+ V + R S + K + R Sbjct: 94 VD-IEYVRNRQIIVKRDVCIGKMP---------------VMLRSSRCHLRRETKGPMEGR 137 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 + R++ + + + + I ++ L+ E+L + Sbjct: 138 KTKDRRI-------------RESQECPLDVGGYFIVRGIERVVLIQEQL----------S 174 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 ++ +E G + + + V + + +E ++ A + Sbjct: 175 KNRIIIESGPKGLFASVTSSTDEHKSKTSVTTRDDCYYLKNSMFSEEVPVVIMMKALGLV 234 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI--YRMMRPGEP 375 +A+ + I P E + R AL+ I Y ++P + Sbjct: 235 QDREVAECVGKEYFEIMV---------PSFGECMSK-GIFTREQALLYISSYIKLKPEDN 284 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 E L E + + + + I ++++L Sbjct: 285 RIEEVLTVLSEKVLPNVQ------IEGCDLRKK-------------GIYIALMVRRLAQT 325 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-------SLGDLDTLM 488 + DD D +GN+R G++ F R +K+ + S + Sbjct: 326 KLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQEFDAL 385 Query: 489 PQDMINAKPISAAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRISALGP-----GGLTR 540 + A I++ + G+ L +F M+++ ++ ISALG + Sbjct: 386 TFLNLQANMITSTLARAISTGNWNLKRFRMERSGVTHVLSRHSYISALGMMTKINSHFEK 445 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 R R +H + +G +CP++TPEG + GL+ +L++ A+ P + Sbjct: 446 TRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITT-NSDTKPILDTVYKLGV 504 Query: 601 DEI--HYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 +I Y I + + N ++ + VE R KG F ++ Sbjct: 505 VDINSVYTREIHQKDMFSVFLNGDIIGITNRADFLVEQFKLHRRKGLVGKFVSIYKVTVE 564 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG- 713 + S + L D NR Q + + + D+ L + VA++SG Sbjct: 565 -RVIHIASDNGRVCRPLIIIDKNRI-------NQTIISNQMDECLKALNISEKVAIESGK 616 Query: 714 ----------VTAVAKRGGVVQYVDASR---IVIKVNEDEMYPGEAGIDI---------- 750 G ++Y+D + ++ + +++ ++I Sbjct: 617 SLFDCYLKYKSFTDLLEEGFIEYLDVNEENDCLVALKPEDIGEETTHLEISEFAILGYVA 676 Query: 751 --YNLTKYTRSNQNTCINQMPCVSLG---------------------EPVERGDVLADGP 787 + +S +NT M ++G P+ +L Sbjct: 677 GLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTKIL---D 733 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + E+ GQN VA M ++GY+ ED++++++ V+ F + + + G Sbjct: 734 LINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGM 793 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 ++ PN E+ LDE G+ G V G + V K++P Sbjct: 794 SDVLW--PNPKESV---LDEDGLGKPGKMVRDGTVYVNKMSP 830 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 81/432 (18%), Positives = 140/432 (32%), Gaps = 70/432 (16%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 +P G + V + + + + E+ L + + Sbjct: 740 IPAGQNAMVAVM------SYSGYDIEDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGM 793 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 K L D + G + + + D K I + Sbjct: 794 SDVLWPNPKESVLDEDGLGKPGKMVRDGTVYVNK-MSPVDGTYKFTGKVHRGDPAYIDKI 852 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 ++K L R + GDK + RHG KGV+ + EDMP+++ G DI Sbjct: 853 LITKSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDI--- 909 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 I+ H + +G + Sbjct: 910 ------------IMNPHGFPSRMTVGKIV------------------------------- 926 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 E++ + +G + + F + ELL SG+ G TG Sbjct: 927 --------ELISGKAGVLEGQILDSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGA 978 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + G ++ +L H+V DK+H R+ G +++T+QP G+++ GG + GEME L Sbjct: 979 PLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLI 1038 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKM---------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 YGA+ + E L SD G ++ MP + +L +E+ Sbjct: 1039 GYGASSLITERLMTSSDVFEAYVCRSCGVLAFKGCCVACKGTKPVKVKMPYACKLLFQEL 1098 Query: 1331 RSLGINIELEDE 1342 S+ I L E Sbjct: 1099 MSMNILPRLHIE 1110 >UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z2_OEDCA Length = 739 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 137/357 (38%), Positives = 193/357 (54%), Gaps = 43/357 (12%) Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD---DL 1042 + K E + + Q ++L ++ D+ + + + D +L Sbjct: 418 KKFYRKNNNQELTERTINKTNIKLQFQKLRQKKDKKFYSINNDEAEQNVLPRKKDFSLNL 477 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 + VYLA KR+IQ GDK+AGRHGNKG++SKI PI+DMPY +G+ VD+VLNPLG Sbjct: 478 FNSKPFTIHVYLAEKRKIQVGDKIAGRHGNKGIVSKILPIQDMPYLADGSFVDLVLNPLG 537 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 VPSRMN+GQI E LG+A +G+ + + +G + + S Sbjct: 538 VPSRMNVGQIYECLLGLAGYYLGEYYRILPFDE--------------KIGEEASRSFVFS 583 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + + L D G+ L+DGRTGE+FE Sbjct: 584 KLYEAGMKTGN-------------------------YWLFDPKNPGKTYLFDGRTGEKFE 618 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + V +GY Y+LKL HLVDDK+H+RSTG YS VTQQPL G+++ GGQR GEMEVWALE YG Sbjct: 619 QQVMIGYAYILKLVHLVDDKIHSRSTGPYSAVTQQPLRGRSKQGGQRLGEMEVWALEGYG 678 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AA+TL E+LT+KSDD GR ++ +I+ PESF VL+ E+++L +I + Sbjct: 679 AAFTLLELLTIKSDDKIGRLTIWDSILRQKEIS-IKTPESFKVLVCELKALCFDIGI 734 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 137/247 (55%), Gaps = 2/247 (0%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L Y RSNQ+TC+ P ++ G V+ GD+LAD S+ GELA+GQN+ +A+MPW GY Sbjct: 11 YHLENYHRSNQDTCLVHRPTINEGNWVQPGDILADCSSSKNGELAIGQNILIAYMPWEGY 70 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED++L+S+R+V ++ +T+IHI+ +T+ G E+IT ++ ++ LS LD++GI Sbjct: 71 NYEDAMLISDRLVYDEIYTSIHIERYEISIEETQFGFEKITKELYDLPGENLSHLDKNGI 130 Query: 871 VYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRAIFGEKASDV-KDSSLRVPNGVSGTV 928 +G+ + GDILVGKVTP + + + EKLL I G K + KD+SLRVP G+ V Sbjct: 131 TVLGSWLKEGDILVGKVTPTDKKVKYSNYEKLLYDILGTKKQNKGKDTSLRVPKGLEAKV 190 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 I +++ + + I ++ ++ + + Sbjct: 191 ITIEILSDNLSFSLTNFNLISLPNPLIYIQNRFLRFLNIQNKKNINSTHFAFDNKFKNQF 250 Query: 989 LDKLPRD 995 L R+ Sbjct: 251 LKISSRN 257 >UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SKJ8_VERA1 Length = 1105 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/486 (19%), Positives = 168/486 (34%), Gaps = 84/486 (17%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEE----KLLRAIFGEKASD---VKDSSLRVPNGVSG 926 E+ IL V + P +P + + G A + D+ L Sbjct: 677 EIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQR 736 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 ++ + +K + + + D+ + L + + + + Sbjct: 737 PMVISKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALLWILMAWPWSVARSGLGEAMVK 796 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 ++ P D D + +K + ++ K Sbjct: 797 KE---TPLDTGSTGIGNDRGPSEFRDSSISYRIPDPAYIDKVMISQSEK----------D 843 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 ++KV RR + GDK + RHG KGV+ I ED+P+ + G DI++NP G PSR Sbjct: 844 NMVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSR 903 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 +G + + + + ++ Sbjct: 904 ---------------MTVGKLLECLTGKASVLDGRPDYGF-------------------- 928 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 F ++ E L G+ G TGE E + Sbjct: 929 -----------------GDAFRSHPLKQMSEALVDHGFSWEGKDYFTSGITGEPLEAYIF 971 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G +Y +L H+V DKMH+R+ G +++T+QP G+++ GG R GEME L AYGA+ Sbjct: 972 NGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQL 1031 Query: 1287 LQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 L E L + SD D+ + + MP + +L++E+ S+ + Sbjct: 1032 LLERLMISSDGTEIDICQQCGLFGYKGYCHTCRSTKEVTKMTMPYAAKLLVQELISMNVG 1091 Query: 1337 IELEDE 1342 + L+ E Sbjct: 1092 VRLQME 1097 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 112/756 (14%), Positives = 228/756 (30%), Gaps = 107/756 (14%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR---- 200 +V Q S F D + + + + R WL+F D + R+D Sbjct: 44 LVKQHIDSYNFFVDHEIKDIVRANRTI---RSDVNSSFWLEF-TDIRVESPSRLDFNDAR 99 Query: 201 --RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET-------- 250 P LR + Y +D+ + + +I + + +P L+ Sbjct: 100 AHSEVTPMECRLRDMTYGAPIFVDIAYIRDKSKIVRRNVPLGRLPVMLKSAKCRLNGASN 159 Query: 251 --------------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 F I KV + + + R I + ++ + + + Sbjct: 160 KEMALMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNNIITASVTSSTHERK 219 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSG-HKRIETLFTNDLDHGPYISETL---- 351 + + + + ++ L G +E + D G Y E Sbjct: 220 TKTNITLKKDRISLVHNVLVEPAPIVIVLKALGGLSDLEIMQLVAGDDGRYQDEFTVNFD 279 Query: 352 --RVDPTNDRLSALVEIYRMMRPG----EPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 + AL I ++ G P +A ++ E + ++ + Sbjct: 280 EATKQGVYTQQQALEWIGSRVKMGGRGRFQPNSQARKNNIEEGMDALSNLIIAHIPVEGL 339 Query: 406 NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 + + ++++ + VDD D +GN+R+ G++ F Sbjct: 340 -----------DFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQLLSLLFE 388 Query: 466 VGLVRVERAVK-------ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS---QFM 515 + VK ++ + + +A I + + + M Sbjct: 389 DLFKKFCGDVKASIDKVLKKDNRAVAMDAVTMISNHANNIGQGINRAIQTGNWTVKRFNM 448 Query: 516 DQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 ++ ++ ISALG + R R + P+ +G +CP +TPEG G Sbjct: 449 NRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACG 508 Query: 571 LINSLSVYAQTNEYGFLETPYRKVT-DGVVTDEIHYLSAIE---EGNYVIAQANSNLDE- 625 L+ +L++ E R V + I S E EG+Y+I + Sbjct: 509 LVKNLALMTHITTNAEEEPVKRWVFTVDDNVEPIRNFSGSEMHREGSYIIHINGTPFALT 568 Query: 626 --EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 F T R +G S F ++ + G P++ + L Sbjct: 569 KFPKRFTNRFRTMRRRGWISPFVGVHINNHFNAVHIATDEGRICRPYIIVKNGKPKLKAE 628 Query: 684 NM----------------QRQAVPTLRADKPLVGTGMERAVAVDSGV------TAVAKRG 721 ++ + + + E V + T + Sbjct: 629 HLKLLQLGKATFDDFLTNGVVEYLDVNEENDTLVALYETDVNQSTTHMEIEPFTILGAVA 688 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G++ + ++ + M G+ I ++ R + V P+ Sbjct: 689 GLIPFPHHNQSPRNTYQCAM--GKQAIGAIAYNQFNRIDTLLYT----LVYPQRPMVISK 742 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 + +L GQN V M ++GY+ ED++L Sbjct: 743 TI---QLIHYDKLPAGQNATVVVMSYSGYDIEDALL 775 >UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota RepID=Q0UYS5_PHANO Length = 1616 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/478 (18%), Positives = 147/478 (30%), Gaps = 116/478 (24%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ I + ++ + + S++ V A Sbjct: 1191 MDDAMILNKSAHERGFGHGTIYKTKICDLE---EGARRNRSGRTISKLFGFAPDSLVPAS 1247 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD-------------ELKHEFEKKLEAKRR 1034 + + L D +G YD E +L Sbjct: 1248 RKETLDEDGLPRIGTLLRNGDAIAAWHTVSYDAASDDYVNRDANTNYFKYKEDELAFVEE 1307 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 G + + + + L V R GDK + RHG KGV S+ P DMP+ E+G Sbjct: 1308 VRIIGSEDGTQPCQKLSIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPSIDMPFSESGIQP 1367 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 D+++NP P + IG + ++ + GA Sbjct: 1368 DVIINPHAFP---------------SRMTIGMFVESLAGKA----------------GAL 1396 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 D + F +E L G +Y Sbjct: 1397 HGIAQDSTPFRFDEQ-------------------NTAVDFFGHQLMKAGYNYYGNEPMYS 1437 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G TG++ + +G +Y +L H+V+DK R+TG + T QP+ G+ + GG R GEME Sbjct: 1438 GITGQELAADIYIGVVYYQRLRHMVNDKYQVRTTGPINSTTGQPIKGRKKGGGIRVGEME 1497 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTK----------------------------MYK 1306 AL A+G A+ LQ+ L SD + Sbjct: 1498 RDALIAHGTAFLLQDRLMNCSDYTKAPICRECGSFLSTAPTVSEYGRKKDRGAQLTIRCR 1557 Query: 1307 NIVD----------------------GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + +P L E+ S+G+ ++ + E Sbjct: 1558 RCAKPADGITNKADVWMDGQGMRFQGGENIGVVAVPGVLKYLDVELASMGVKLKFKVE 1615 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 56/475 (11%), Positives = 144/475 (30%), Gaps = 64/475 (13%) Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 ++ + ++ L + D + T +V + + + Sbjct: 258 MVLKSLVETNDREIFEGLVGAAGSEGLAEKQFVTDRVELLLRTYKVYGLHSKAKTRAYLG 317 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 + + + ++ E R L +G ++ Sbjct: 318 QKFKVVLQIPEDTSDE--EAGTEFLRRIVLPHLGAY--------HITPAQDADKFRMLLF 367 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----------- 476 +++KL + G+ VD+ D + N+ I G++ + L ++++ Sbjct: 368 MIRKLYSLVEGECCVDNPDAVQNQEILLGGQLYGMIMKERLDDWLQSMRPVLQDWGRRTE 427 Query: 477 -ERLSLGDLDTLMPQDMINAKP--ISAAVKEFFGSSQL--------------SQFMDQNN 519 + + ++ I A++ F + L ++ N Sbjct: 428 WRPFTSQEFQKDFISKILRRSQTDIGRAMEYFLSTGNLISPTGLDLQQTAGFVVVAEKIN 487 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 I+H R + G E VR + P +G +CP+ TP+G GL+N S Sbjct: 488 FYRFISHFRMV---HRGAFFAELKTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFSHKC 544 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL------DEEGHFVEDL 633 + + K+ + S+ V+ Q + + + + L Sbjct: 545 KLATQNVDVSAIPKLVAQLGVSSK---SSASIEASVVVQLDGRVLGFCSPKQAKVIADTL 601 Query: 634 VTCRSKGESSLFSRDQVDYMDVS------TQQVVSVGASLIPFLEHDDANRALMGANMQR 687 + +G ++ ++ Y+ S ++S A + +++ ++ ++ Sbjct: 602 RYWKVEGSHNVPLEMEIGYVPNSNGGQYPGVYMMSQVARMYRPVKYLPLDKLDYVGPFEQ 661 Query: 688 QAVPTLRADKPLV---GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 + D +V T +E + + + D ++ + + Sbjct: 662 PYMSIACTDAEIVSGDSTHVEYD-----PTNIFSIVANMTPFSDFNQSPRNMYQC 711 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 58/178 (32%), Gaps = 17/178 (9%) Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + + + +DA++ +M G + R++ T Q + Sbjct: 1102 TVEYSDNDKIQEVIDAAQKPFFTGNCQMGKQSMGTPGTAMRY--RTDNKTYRLQTGQTPV 1159 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 P + G N VA + + GY+ +D++++++ + Sbjct: 1160 VRPPLHNEY-------GFDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIY 1212 Query: 834 QELACV----SRDTKLGPEEIT----ADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + C +R + G A V + LDE G+ IG + GD + Sbjct: 1213 KTKICDLEEGARRNRSGRTISKLFGFAPDSLVPASRKETLDEDGLPRIGTLLRNGDAI 1270 Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 66/473 (13%), Positives = 133/473 (28%), Gaps = 63/473 (13%) Query: 9 KRIRKDFGKRPQVLD-VPYL---LSIQLDSFQKFIEQDPEGQYGLEAAFRSVF------- 57 KR F P+ P L + ++SF + + L+ VF Sbjct: 21 KRRHDLFSNPPKDSTAYPTLAAAVDPHINSFNSIFAAGGQLEEALKDIGTKVFLDGNPYA 80 Query: 58 -PIQSYSGN-----SELQYVSYRLGEPV---------FDVQECQIRGVTYSAPLRVKLRL 102 P + N + ++ + P EC+ R TY LR +L Sbjct: 81 RPEEVGQRNRLSVRIQDVFLDKSVLPPSNKVALKNRNILPAECRERHATYRGKLRARLEW 140 Query: 103 VIYEREAPEGTVKDIKEQEVYMGEIPLMTD-----------NGTFVINGTERVIVSQLHR 151 + D +E+ +G +P+M G F++NG E++I Sbjct: 141 KVNN--------GDWREEVCDLGAVPIMLRLVKAKEESEELGGYFIVNGIEKIIRMLQVN 192 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRR-- 202 F + K ++ Y I R D + N+ +R R+ Sbjct: 193 RRN-FPMAIKRGAFTNRGPGYTQYGILLRSMRPDQTSQTNALHYLSDGNVNLRFSWRKAE 251 Query: 203 -KLPATIILRALN-YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 +P ++L++L +I + E K + E L + + + K Sbjct: 252 YLVPVMMVLKSLVETNDREIFEGLVGAAGSEGLAEKQFVTDRVELLLRTYKVYGLHSKAK 311 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI----DESTGELICAANME 316 G++ + D + + I + +I D ++ + Sbjct: 312 TRAYLGQKFKVVLQIPEDTSDEEAGTEFLRRIVLPHLGAYHITPAQDADKFRMLLFMIRK 371 Query: 317 LSLDLLAKLSQSGHKRIE-TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 L + + ++ I + D L + R P Sbjct: 372 LYSLVEGECCVDNPDAVQNQEILLGGQLYGMIMKERLDDWLQSMRPVLQDWGRRTE-WRP 430 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 T + + F + + D+ + L + ++ Sbjct: 431 FTSQEFQKDFISKILRRSQTDIGRAMEYFLSTGNLISPTGLDLQQTAGFVVVA 483 >UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=Archaea RepID=RPOB1_METTH Length = 603 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 96/411 (23%), Positives = 160/411 (38%), Gaps = 81/411 (19%) Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 E + + + L+ A + +G V K ++ Sbjct: 256 RFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPRFLEEID-EFGTVA 314 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 ++ + + ++ E + L + + ++ K+ + +R+ + GDK Sbjct: 315 ERRRETSVTVRHGEKG-IVDAVLLTETVE----------GSRLAKIRVREQRQPELGDKF 363 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 A RHG KGV+ I EDMP+ E+G D+++NP H + +G Sbjct: 364 ASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNP---------------HAIPSRMSVGQ 408 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + + + +G + Sbjct: 409 VLEMLAGKAA---------------------------------------CMEGRRVDGTP 429 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G E +IKE L+ T+G LY+G TGE+ E + +G Y KL+H+ DK++AR Sbjct: 430 FTGEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYAR 489 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG------ 1300 S G ++T+QP G+A+ GG RFGEME L A+GAA L+E L +SD Sbjct: 490 SRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCADC 549 Query: 1301 ---------RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R K Y I + + + +F +LL E++SL I +L E Sbjct: 550 GMIAVYDKIRDKKYCPICEDSESFPVEVSYAFKLLLDELKSLCIFPKLILE 600 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 81/422 (19%), Positives = 140/422 (33%), Gaps = 57/422 (13%) Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 + + G + C + E R + +VS + ++ D RA Sbjct: 4 TKIYINGKLIGT---CENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRA- 59 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA----------- 729 R+ + + +PL+ + G+++Y+DA Sbjct: 60 ------RRPLIIVEDGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDAEEEENAYIAMS 113 Query: 730 -SRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 I + E+ P I + S +NT M +LG D+ D Sbjct: 114 PDEINDEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTD 173 Query: 786 GPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 + T E GQN VA M + GYN ED++++++ ++ Sbjct: 174 TRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGL 233 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVG------EAALSKLDESGIVYIGAEVTGGD 881 + + R G E+ +IP G E+ LDE GI+ AEV+ GD Sbjct: 234 ARSSFFRSYEAAERRYPGGQED-RFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGD 292 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 +L+GK +P + E FG A +++S+ V +G G V V + + Sbjct: 293 VLIGKTSPPRFLEEIDE-------FGTVAERRRETSVTVRHGEKGIVDAVLLTETVEGSR 345 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 + E+ Q + K S Q GL + L P + Sbjct: 346 LAKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMS 405 Query: 1002 LT 1003 + Sbjct: 406 VG 407 >UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas RepID=C1FDM4_9CHLO Length = 1192 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 117/519 (22%), Positives = 181/519 (34%), Gaps = 115/519 (22%) Query: 888 TPKGETQLTPEEKLLR--------AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 P P+ K+ R A+ G+ D+ P G + V+ V T + Sbjct: 719 MPLHSFCYRPDTKIYRLHTPQRPVAMTGQYDKYQMDN---YPLGTNA-VVAVIAHTGYDM 774 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG---GVEAEKLDKLPRDR 996 E + + E L AG V G +K P D Sbjct: 775 EDAMIVNKGAMERGLGHATLYKTETVTLVAGSDENFGQCNVIQQKLGSPIAFTEKHPFDP 834 Query: 997 WLEL-----GLTDEEKQNQLEQLAEQYDELKHEFEKK----LEAKRRKITQGDDLAPGVL 1047 ++ + ++ + L + ++ + K + R I+ G Sbjct: 835 DIDTDGAPRPGSIKQAGSTLCSVVDRSTGRVRLHKIKGSDHVIIDRVSISSGKASKGQTE 894 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSR 1106 + V + R GDK + RHG KGV+S + P ED+PY E +G+ DI++NP PSR Sbjct: 895 TKMSVTVRCDRNPIIGDKFSSRHGQKGVLSFLCPEEDLPYIEKSGSRPDILINPHAFPSR 954 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IG +LE+ A GA + +D S F Sbjct: 955 MTIGMLLESMASKA-------------------------------GALDGRFIDASPFQA 983 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + + E E+L+ SG + +G TGE+F+ + Sbjct: 984 ANDETHIISPTR---------------EYGEMLRKHGYNYSGSETMVNGLTGERFDVDIF 1028 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG +Y +L H+V DK RS G + +TQQP+ G+ GG RFGEME AL A+G++Y Sbjct: 1029 VGLVYYQRLRHMVSDKFQVRSLGPNNPLTQQPIKGRKAGGGIRFGEMERDALIAHGSSYL 1088 Query: 1287 LQEMLTVKS--------------------------------------------DDVNGRT 1302 + + L S DD+ R Sbjct: 1089 IHDRLHACSDRHVTSLCTYCGSLLAPGANIQMAATHQVHASGAGNGQGRLHSFDDIFPRK 1148 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + G +P F L E+ ++ I I LE Sbjct: 1149 VSCRVCNTGTGVHNVALPFVFKYLAAELAAMNIRIGLEV 1187 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 110/889 (12%), Positives = 250/889 (28%), Gaps = 127/889 (14%) Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL---DLFFEKVIFEIRDNKLQ 238 +W + RI + A+ + ++ ++++ + E + I + Sbjct: 115 AWTFGDVGAIFRREFRICMFPVMVASKVCNLFGFSQDELICRGEEGHEMGGYFILNGN-- 172 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 E + L + + + K Y +G T + + + A Sbjct: 173 -ERIIRLLVQQRRHYIMGMKRKAYSSRGPIYTHYATAIRCSANDEHTSTVRIHYTSDGSA 231 Query: 299 KDYIDESTGE------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 + E +I A E S ++ + G + ++ I Sbjct: 232 RLVFVHRRKEYFVPAGIILRALAEFSDSVVQAIVARGLTGLGA-QVFAIERIRIILGEAA 290 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 ++++ AL + R E + KFN Sbjct: 291 TFGIHNKVQALAYLGEHFRAQLDANPWETNFDVGKRLICEHIFIHLQSDEDKFN------ 344 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 ++ +M+KL + G+ D+ D L + I G + + R L Sbjct: 345 -----------LVLLMMQKLYALVAGQCSADNPDSLMHHEILLPGILMQIFVREKLQDAL 393 Query: 473 RAVKERLSLGDLDTLMPQDM-------------INAKPISAAVKEFFGSSQLSQ------ 513 K L+ + I I + F + LS Sbjct: 394 HKAKIALNREFEENPNHASADDGEWLSQVAIEAITKTNIGRLAEYFLATGNLSSRTGLGL 453 Query: 514 --------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 D+ N + I+H R ++ G E VR + P +G +CP+ TP+ Sbjct: 454 TQTSGFTIVADKLNYMRYISHFR---SVHRGAYFAELRTTTVRKLLPESWGFLCPVHTPD 510 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN----------YV 615 G GL+N L+ + R V + A+ ++ Sbjct: 511 GSPCGLLNHLAASCYIHVACESTGEARDRARSQVLKVLSSAGALILHGSTSLGSAPPAHL 570 Query: 616 IAQANSNL------DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 + + + V L + G + + S ++ ++ +S+ L Sbjct: 571 TVMLDGLILGFVADSDAKVVVSALRAAKVSGSNGVSSHLEIAHIPLSSCGYGGAFPGLYL 630 Query: 670 FLEHDDANRALM---------GANMQRQAVPTLRADKPLVGTGMERAVAVDSG-VTAVAK 719 F R ++ ++++ + D T + ++G T ++ Sbjct: 631 FSTSSRMMRPVIQQQNRITENIGSLEQAFMSIRCPDGRQKPTCIAEHAHEENGPGTILSV 690 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 + + D ++ + + +M G+ +++ R + P + + Sbjct: 691 VASLTPWSDFNQSPRNMYQCQMAKQTMGMPLHSFCY--RPDTKIYRLHTPQRPVAMTGQY 748 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 D LG N VA + GY+ ED+++V++ ++ + Sbjct: 749 DKYQMDN-------YPLGTNAVVAVIAHTGYDMEDAMIVNKGAMERGLGHATLYKTETVT 801 Query: 840 S---RDTKLG-----PEEITADIPNVGEAALS-KLDESGIVYIGAEVTGGDILVGKVTPK 890 D G +++ + I + +D G G+ G L Sbjct: 802 LVAGSDENFGQCNVIQQKLGSPIAFTEKHPFDPDIDTDGAPRPGSIKQAGSTLCS----- 856 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + V+ ++ + +ID + K + ++ Sbjct: 857 --------------VVDRSTGRVRLHKIKGSDH---VIIDRVSISSGKASKGQTETKMSV 899 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + ++ G + + + + D + Sbjct: 900 TVRCDRNPIIGDKFS-SRHGQKGVLSFLCPEEDLPYIEKSGSRPDILIN 947 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 75/472 (15%), Positives = 149/472 (31%), Gaps = 84/472 (17%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYR 74 + + L SF F++ GL R + I S S ++ + + Sbjct: 22 LRGVARNHLASFDYFLDH------GLSDVVRCLDNISIQPSGAQNTSSSPRFKMWFENIS 75 Query: 75 LGEP-------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 +G P +EC+ TY AP+ + G V I +E Sbjct: 76 IGRPIREDTTAVRARDPRVFPRECRESSNTYKAPMLATVAWTF-------GDVGAIFRRE 128 Query: 122 VYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFF 157 + P+M + G F++NG ER+ + L + + Sbjct: 129 FRICMFPVMVASKVCNLFGFSQDELICRGEEGHEMGGYFILNGNERI-IRLLVQQRRHYI 187 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGS---------WLDFEFDPKDNL-FVRIDRRRKLPAT 207 K K +SS +Y R S + + D L FV + +PA Sbjct: 188 MGMKRKAYSSRGPIYTHYATAIRCSANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAG 247 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 IILRAL ++ ++ + + + +E + + GE A+F I + G Sbjct: 248 IILRALAEFSDSVVQAIVARGLTGLGAQVFAIERI-RIILGEAATFGIHNKVQALAYLGE 306 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 A+ + + +V I + DE L+ +L + + S Sbjct: 307 HFRAQLDANPWETN---FDVGKRLICEHIFIHLQSDEDKFNLVLLMMQKLYALVAGQCSA 363 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRL-SALVEIYRMMRPG-EPPTREAAESLF 385 + +++ + + + D L A + + R + + E L Sbjct: 364 DNPDSLMH---HEILLPGILMQIFVREKLQDALHKAKIALNREFEENPNHASADDGEWLS 420 Query: 386 ENLFFSEDRYDLSAVGRMK-----FNRSLLREEIEGSGILSKDDIIDVMKKL 432 + + + ++ + + + SG D ++ M+ + Sbjct: 421 QVAIEAITKTNIGRLAEYFLATGNLSSRTGLGLTQTSGFTIVADKLNYMRYI 472 >UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax=root RepID=RPOB1_METJA Length = 636 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 98/469 (20%), Positives = 173/469 (36%), Gaps = 92/469 (19%) Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL----EIEEMQLK 954 + + AI + +++D+ + + + + F + + E Sbjct: 209 QNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGGQMDRFEIPDKG 268 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL 1014 E + LE + + + G V K E+ + + Q + + Sbjct: 269 VRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHEITIQVK-PQRRDSSV 327 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 ++ E +K + + ++VKV + R + GDK A RHG KG Sbjct: 328 VVRHGEEG-YIDKVILTE----------TKEGNRLVKVKVRDLRIPELGDKFASRHGQKG 376 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V+ P ED+P+ E+G DI++N H + +G + + Sbjct: 377 VMGLTVPQEDLPFTESGIVPDIIIN---------------PHAIPSRMTVGQLLEML--- 418 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 +G I +F G KE + Sbjct: 419 ------------------------------------GGKVGALEGRRIDGTIFSGEKEWD 442 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 +++ L+ G+ +YDG+TG++FE + +G Y KL+HLV K+HARS G ++ Sbjct: 443 LRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVL 502 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------------------ 1296 T+QP G+A+ GG RFGEME L +GAA L+E L +SD Sbjct: 503 TRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFAILDY 562 Query: 1297 ----DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 +N+ +P +F +LL E++S+ I ++ Sbjct: 563 KRGLKYCPICGEIENLYSSKKIPFVRIPYAFKLLLDELKSMCILPRIKV 611 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 79/433 (18%), Positives = 145/433 (33%), Gaps = 77/433 (17%) Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 L++ E YV + D+ V + R KGE Q +V Sbjct: 4 LASREVNIYVNGKLVGTTDKPEELVNFIREKRRKGELP---------------QYTTVAY 48 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK--RGGV 723 ++++N + + R P + + E + G + + GV Sbjct: 49 -------NEESNDIHINTDAGRIVRPLIVVENGKPKLTKEHIEKLKKGEITFSDLVKEGV 101 Query: 724 VQYVDASR---IVIKVNEDEMYPGEAGIDIYNLT---------KYTRSN---QNTCINQM 768 ++Y+DA I ++E+E+ ++I LT Y N + T M Sbjct: 102 IEYLDAEEEENAYIALSEEELTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAM 161 Query: 769 PCVSLGEPVERGDVLADG------------------PSTDLGELALGQNMRVAFMPWNGY 810 SLG P+ D + GQN VA M + GY Sbjct: 162 GKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGY 221 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG------EAALSK 864 N ED+I+ ++ + + + R G + +IP+ G E Sbjct: 222 NMEDAIVFNKSAIDRGLGRSTFFRTYDACERRY-PGGQMDRFEIPDKGVRGYRSEECYRY 280 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 L+E GIV + + V GGD++VGK +P + I + +DSS+ V +G Sbjct: 281 LEEDGIVAVESHVKGGDVIVGKTSPPRFLEE-------HEITIQVKPQRRDSSVVVRHGE 333 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G + V + K + +++++ + + G + + + Sbjct: 334 EGYIDKVILTET------KEGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQEDL 387 Query: 985 EAEKLDKLPRDRW 997 + +P Sbjct: 388 PFTESGIVPDIII 400 >UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S5S8_TRIAD Length = 1016 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 92/431 (21%), Positives = 153/431 (35%), Gaps = 78/431 (18%) Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 ++P G + + V + G + + + + + + D I + + Sbjct: 647 KLPAGQNAIIA---VMSYSGYDIEDAVILNKASVDRGPQADAQTGKTIWKHKVLDADGIC 703 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 + VE++++ + Q L+ + Sbjct: 704 MPGEKVESKQILINKSIPSVTSTPIAGTGQKLLQPEYIDMPMTYRGPTDAYVENVMISSN 763 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 D+ ++K L RR + GDK + RHG KGV I EDMP+ D ++ Sbjct: 764 NDE-----AFLIKTLLRSSRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFT------DQIM 812 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP G P + +G + Sbjct: 813 NPHGFP---------------SRMTVGKLM------------------------------ 827 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 EV+ +L G FDG K ++ + L + +G+ L G TG Sbjct: 828 ---------EVIGGKASLLDGKFRYGTAFDGDKLEDLCQTLIDYNYSYAGKDYLTSGITG 878 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E + G +Y +L H+V DKMHAR+ G +++T+QP G+++ GG R GEME L Sbjct: 879 EGLSAYIFFGPVYYQRLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCL 938 Query: 1279 EAYGAAYTLQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLK 1328 AYG + L E L + SD DV K H +P + +L + Sbjct: 939 IAYGTSMLLVERLMISSDAFEVDVCNNCGLLAYSKWCHYCHSSCHVSSLQIPYACKLLFQ 998 Query: 1329 EIRSLGINIEL 1339 E++S+ I L Sbjct: 999 ELQSMNIIPRL 1009 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 210/698 (30%), Gaps = 115/698 (16%) Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +E L LS +G R +++ + D++ + Sbjct: 183 ILIQEQLSKNRMILEVDNKGNALSYIGSRVRQRKWGAKKLP---VDEARDLLANVV---- 235 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT-------- 486 + + +DD D+ GN+R+ G++ F + +K Sbjct: 236 LSHIPSILDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMN 295 Query: 487 -----LMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITHKRRISALG---- 534 + I+ + S MD+ ++ +SALG Sbjct: 296 LRFLEFDIVKYMRQDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLSYLSALGMMTR 355 Query: 535 -PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 + R R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 356 ISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT-DSDDKIIIN 414 Query: 594 VTDGVVTDEIHYLSAIE--EGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSR 647 + + ++I+ LS E + I N + + R Sbjct: 415 LLFNLGVEDINLLSGEELSLPHIYIVYVNGYVLGAARNYKKLIRTFRLLRRD-----IKT 469 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 QV + ++ S+ P + N AL G + R ++++KPLV Sbjct: 470 AQVKRILYLIANYINEFVSIYPNHTYRQINIALDGGRVCR-PYIIVKSEKPLVTIKHIEE 528 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKV---NEDEMYPGEAGIDI------------YN 752 ++ R G+++Y+D + E ++ +DI Sbjct: 529 LSQGIRSFDDFIRNGLIEYLDVNEENDCNIALYESDINSKTTHLDIEPFTILGVCAGLIP 588 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG------------------PSTDLGEL 794 + +S +NT M ++G D + +L Sbjct: 589 FPHHNQSPRNTYQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVKTKTIDLIEFDKL 648 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQED----RFTTIHIQELACVSRDTKLGPEEI 850 GQN +A M ++GY+ ED++++++ V T I + Sbjct: 649 PAGQNAIIAVMSYSGYDIEDAVILNKASVDRGPQADAQTGKTIWKHKV------------ 696 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP--EEKLLRAIFGE 908 LD GI G +V IL+ K P + +KLL+ Sbjct: 697 --------------LDADGICMPGEKVESKQILINKSIPSVTSTPIAGTGQKLLQ----- 737 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 + D + V +V + + + + L + + K S Q Sbjct: 738 --PEYIDMPMTYRGPTDAYVENVMISSNNDEAFLIKTLLRSSRRPEIGDKFSSRHGQKGV 795 Query: 969 AGLFSRIRAVLVAGGV--EAEKLDKLPRDRWLELGLTD 1004 GL + + ++ + +E+ Sbjct: 796 CGLIVNQEDMPFTDQIMNPHGFPSRMTVGKLMEVIGGK 833 >UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum RepID=RPC2_DICDI Length = 1608 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 93/426 (21%), Positives = 153/426 (35%), Gaps = 83/426 (19%) Query: 927 TVIDVQVFT--RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 V+ QV + + G + R L+Q K L + I + G ++ +LV Sbjct: 1250 IVLKKQVTSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYS 1309 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 +D P + Y + ++++ + +T GDD Sbjct: 1310 PLNTIDATPNPELI-----------PDSAYKSSY--MGYKYDNPAFIDKVLLTSGDDE-- 1354 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 ++K+ + RR + GDK + RHG KGV I EDMP+ + G DI+ Sbjct: 1355 --QLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDII------- 1405 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 + H + IG I Sbjct: 1406 --------MNPHGFPSRMTIGKMI------------------------------------ 1421 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E++ + G F G + I ++L G+ + G TGE Sbjct: 1422 ---ELLAGKAGVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACF 1478 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G ++ KL H+V DKMHAR+ G +T+QP G+A+ GG R GEME L YGA+ Sbjct: 1479 IFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGAS 1538 Query: 1285 YTLQEMLTVKSDDVN----------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 + E L + SD G + +P + +L +E++++ Sbjct: 1539 ALIMERLMISSDRFTVYACKNCGFLGYEGYCQYCKSSVDISTIQIPYACKLLFQELQAMN 1598 Query: 1335 INIELE 1340 I L+ Sbjct: 1599 IVPRLK 1604 Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 74/469 (15%), Positives = 148/469 (31%), Gaps = 46/469 (9%) Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG--NYVIAQANSNL 623 N GL+ + ++ + E P ++ + +I ++ E N + N + Sbjct: 967 SHNCGLVKNFALMSHVTTDD-SEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQI 1025 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS---VGASLIPFLEHDDANRAL 680 + + VT K + R+ V QQ +S G L + D R Sbjct: 1026 IGIHNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPR 1085 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDS-----------------------GVTAV 717 + LR + G+ + V+ T + Sbjct: 1086 LTQEHIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPWTTHLEIEPFTML 1145 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 G++ Y ++ + M G+ I + TR + + V P+ Sbjct: 1146 GCVAGLIPYPHHNQSPRNTYQCAM--GKQAIGAIAYNQLTRIDTLLYL----LVHTQRPL 1199 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + + + +L G N VA M ++GY+ ED++++++ + I +++ Sbjct: 1200 CQTRTI---DLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQV 1256 Query: 838 CVSRDTKLG-PEEITADIPN-VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 + + I PN + + LD GI G G ILV K +P Sbjct: 1257 TSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDA 1316 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 TP +L+ S K S + + V + + D + + L + + Sbjct: 1317 TPNPELI------PDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPEL 1370 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 K S Q G+ + + + + P + + Sbjct: 1371 GDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGK 1419 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 81/552 (14%), Positives = 173/552 (31%), Gaps = 68/552 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F + + K + + L Y + D + +D + Sbjct: 50 RGLVKQHIDSFNFFINVEMKKIVKANERLTAENDPSYFVRFTDINVGSPTSTEDNLDSVQ 109 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET------------ 250 P LR + Y+ +++ + + I + + +P LR Sbjct: 110 LTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMA 169 Query: 251 ----------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 F + KV + + R I +++ + V K ++ Sbjct: 170 ALGECPMDPGGYFIVRGQEKVILNHEQLSKNRIIIEMDSKGLPSASVTSSTHERK--SRT 227 Query: 301 YIDESTGELICAANME-LSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS------ETLRV 353 + +L N + + L G + + + +++ E + Sbjct: 228 GVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEMAQLVGSDDVFLNAITPSLEECQK 287 Query: 354 DPTNDRLSALVEIYRMMRPGE-PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + AL + ++ P + ++ E L+ V ++N Sbjct: 288 CGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFR---- 343 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L + +++++I K +DD D+ GN+RI G++ F + + Sbjct: 344 -------LKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQ 396 Query: 473 RAVKERL-----SLGDLDTLMPQDMINAKPISAAVKEFFGS--SQLSQF-MDQNNPLSEI 524 +K+ + + L +I I+ S L +F M+++ + Sbjct: 397 SELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVL 456 Query: 525 THKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 + IS +G + R R + P+ +G +CP +TPEG L Sbjct: 457 SRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC-----LHPDT 511 Query: 580 QTNEYGFLETPYRKVTDG--VVTDEIHYLSAIEEGNY-----VIAQANSNLDEEGHFVED 632 + P R++ DG ++T + + A Y +Q L + Sbjct: 512 IITMSNGQQKPIRQLKDGDSIITLDPITMEAHSTRIYSHFIKSSSQYGKQLLKITTITGK 571 Query: 633 LVTCRSKGESSL 644 + C + Sbjct: 572 EIICTNDHRFLT 583 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 60/384 (15%), Positives = 112/384 (29%), Gaps = 37/384 (9%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K + + + P + L+ +DSF FI + + + + + Sbjct: 34 KPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTA-----ENDPSYFV 88 Query: 69 QYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLV--------------- 103 ++ +G P Q C++R +TYSAP+ V + Sbjct: 89 RFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGN 148 Query: 104 --IYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 I R + K EQ +GE P M G F++ G E+VI++ S Sbjct: 149 IPIMLRSSNCVLSKKTPEQMAALGECP-MDPGGYFIVRGQEKVILNHEQLSKNRIIIEMD 207 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 K S V + R S + +P I+L+ + T+Q + Sbjct: 208 SKGLPSASVTSSTH---ERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEM 264 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 + +E + A ++ V + + E+ Sbjct: 265 AQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEAR 324 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL-LAKLSQSGHKRIETLFTND 340 L V + ++ + +I M L G+KRIE Sbjct: 325 DILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLI 384 Query: 341 LDHGPYISETLRVDPTNDRLSALV 364 + + + A+ Sbjct: 385 SLLFEDCFKKFQSELKKSVDQAIA 408 >UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophyta RepID=A3BQ32_ORYSJ Length = 1257 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 147/1040 (14%), Positives = 307/1040 (29%), Gaps = 210/1040 (20%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGN--------SELQYVSYRL 75 L+S Q++S+ F+ GL+ F S+ + Y + + +++ L Sbjct: 140 LVSHQINSYNDFVSH------GLQKMFDSLDEVTVEPDYDPSKKVGPWRHATIKFGRVEL 193 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 EPVF V C + E + K + Q+ MT + Sbjct: 194 EEPVFWVDNC------------------DLDVETLKLKPKHARLQK--------MTYSSK 227 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 + T +V K +G+ Y + + K+ + Sbjct: 228 MKVEMTVQVYSLH------------KSDKAKTGEDPY-----------IQRKDIMKETKW 264 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 V I KLP + ++ + + ++ + E+ + Sbjct: 265 VTIG---KLPVME------------SECEYDFGGYFLIKGMEKVFVAEEQRCLSRIWIND 309 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + ++ Q+ ++ + + V KV+ ++ + I + Sbjct: 310 SPTWEACYQR---------SQIRREKISIKPVQSNDGFRKVINLYFLGATIPIWIMFFAL 360 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL-----RVDPTNDRLSALVEIYRMM 370 +S D A I + D IS T+ + + A I +++ Sbjct: 361 GVSSDKEAF-------DIIDIQECDASMANIISATITESHEQCEGFQREGRASEYIDKLI 413 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 R + P + + + F + +++ Sbjct: 414 RNTKFPPKGSFDEYIGRHMFP----------------------DVSGNRSKALFLGYMVR 451 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL----VRVERAVKERLSLGDLDT 486 L+ +G + D+ D N+R+ E+ + + V + R+ + ++ LS GD D Sbjct: 452 CLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQKRMVKVMQRHLS-GDGDL 510 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRISAL 533 + ++A ++ + F + + + NPL ++ R+ Sbjct: 511 QPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIVATLRRTNPLQMMSDMRK---- 566 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 + + R +P+++G++C + TP+G G + +L++ A + P Sbjct: 567 TRQWVAYAGKAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVS--CLAREPSVD 624 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTCRSKGESSLFSRDQ 649 ++ L E N NL + FV L + R + + + Sbjct: 625 ALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDAQVEIK 684 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 D ++ S ++ L + R +M + L + G+E Sbjct: 685 RDK-QNKEVRIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVEEEED 743 Query: 710 VDSGVTAVAKRGG-------------------------VVQYVDASRIVIKVNEDEMYPG 744 + G ++ + + + + E Sbjct: 744 IRCAYGIRHLFAGDEEKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKRILMQAEKISQ 803 Query: 745 E--AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS---TDLGELALGQN 799 + L + + Q P G S E GQN Sbjct: 804 QAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARPEYFNGQN 863 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG-----PEEITADI 854 V+ G+N EDS++++ ++ F T H + + + ++ E I Sbjct: 864 AIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHKENINFGK 923 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 + + LD G+ YIGA + DI++GKV+ GE Sbjct: 924 TPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGE---------------------- 961 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 D S+++ + G V V + D + + K S Q G Sbjct: 962 DHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDS 1021 Query: 975 IRAVLVAGGVEAEKLDKLPR 994 + P Sbjct: 1022 QENFPFTHQGIVPDIVINPH 1041 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 78/440 (17%), Positives = 134/440 (30%), Gaps = 89/440 (20%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE--AEKLDK 991 F ++ RA M Q K ++ E + + + G +D Sbjct: 874 FNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHKENINFGKTPSKKGLVDS 933 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L D +G + + + ++++ + +K +K ++ ++ DD Sbjct: 934 LDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAF-- 991 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V L R R G+K Sbjct: 992 --VTLRQTRSP--------RIGDK------------------------------------ 1005 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 A G K QE + + E Sbjct: 1006 ----------FASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEA 1055 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 G F I E L G + +GRTGE+ PV G Sbjct: 1056 ALGKGIALGGATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGERAASPVFTGP 1115 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L+H+ +DK+ R+TG +T+QP+ + ++GG +FGEME L A+GAA L E Sbjct: 1116 TFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHE 1175 Query: 1290 MLTVKSD----DVNGRTK-----------------------MYKNIVDGNHQMEPGMPES 1322 L + SD V R + + + +P Sbjct: 1176 RLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRFCRSAEEVVRVSVPYG 1235 Query: 1323 FNVLLKEIRSLGINIELEDE 1342 +L +E+ S+GI ++ + E Sbjct: 1236 AKILYQELFSMGICLKFDTE 1255 >UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RER1_PLAYO Length = 1470 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 103/464 (22%), Positives = 175/464 (37%), Gaps = 48/464 (10%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 V N SGT V + G + + + + + + + ++++ + Sbjct: 1001 YGVDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYKTEVIDLYKKTNSPD 1060 Query: 978 VLVAGGVEAEKLDKLPR--DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + V + R + +++ + Q + + L KK E + Sbjct: 1061 FALGNNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPLYSYINKKNELTTYE 1120 Query: 1036 I--TQGDDL------APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + T GD + ++ + L R GDK A RHG KGV+S++ P EDMP+ Sbjct: 1121 VFKTHGDYYVDCVSNSQSNNQVAIIRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPF 1180 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 E+G D++ NP G+PSRM IG ++E+ G AA G +I+A ++ K Sbjct: 1181 SESGIVPDVIFNPHGIPSRMTIGMLIESICGKAASIYGKRIDATPFRKYTKQKS---FNN 1237 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + G + ++ + +E ++ + +D K +LL Sbjct: 1238 PWIDGCGAKGFLNKQDENADEKKTTIKSSTENSDTTEISYDE-KIDFFAKLLLNKGYDYY 1296 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G LY G G + + G +Y +L H+ DK R TG +T QPL GK + GG Sbjct: 1297 GTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPVCHLTHQPLKGKKKHGG 1356 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK-------------------- 1303 R GEME L ++G ++ + E + SD V + Sbjct: 1357 IRLGEMERDGLISHGCSFIINERFLMNSDGHECFVCPKCGLILSPILQYNCSGKLMKGRS 1416 Query: 1304 --------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + K+ +P LL E+ L I I L Sbjct: 1417 IGGNSKMAVCKSCNVSCKI--VYVPYVLRYLLNELVCLNITIRL 1458 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 100/802 (12%), Positives = 230/802 (28%), Gaps = 109/802 (13%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYRL 75 +L+ +D F FI + + + + + Sbjct: 87 KFLVQSHIDDFNSFINVYIKNMPETLPVIEFSPNLNKYSCLNYEKKPKERIKFYISDIII 146 Query: 76 GEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 PV C++ TY + V + + +I V G Sbjct: 147 KTPVIKNDNGNTRPNYPYLCKLACSTYEGEVLVVI---------NKQYKNEIVRTTVSTG 197 Query: 126 EIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDK 161 IP+M + G F+++G ++I + +++ Sbjct: 198 FIPIMVLSDLCNLKNLNKKELVQKGEDESILGGFFIVSGHLKIIRYVICPKYNAILLNEE 257 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 K H + + N+ I ++E++ ++ + + + L + + Sbjct: 258 NKVHINCLLSDNSVFINSLSYLNNYEYE-----YLSRFQGSFIRIAFNVLILCLSPIKKK 312 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD- 280 + K+ I++ E + +V+ + + ++ Sbjct: 313 SYIYNKIKLGIKNENAIK--YIENYINSIFLKNDINEKEVFDKYNLKYLGKYANTSRTIF 370 Query: 281 ---DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 D + + V+ + E IC +L +L+K ++L Sbjct: 371 RYYDGNNYKKGKNVVKYCVLPHLQSNSEKFETICLMFKQL---VLSKFKLINTVNKDSLE 427 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRM-MRPGEPPTREAAESLFENLFFSEDRYD 396 + + + + + + +Y + E + + ++ Sbjct: 428 YHSVTTCSGLLSNILKERILSCFYRMQMLYSRSLHRFLEKKYEGFKLNVKQIYLRYKEMI 487 Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 L + FN+ LL D ++ ++L + D N R+ + Sbjct: 488 LHELSEDHFNQILLNNT----------DKLENNEELTSENDNMISK--RDSTKNLRLMFM 535 Query: 457 GE---MAEN---QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 E + N R R E + + + IS+ + S Sbjct: 536 NEKEKLFTNVDGYLREIFSD-SRLFIENTRTFGVASFAISYLFKTGNISSDYIHYQQKSG 594 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 D+ N L +T+ R A+ G ++ R + +G +CP+ TP+G G Sbjct: 595 WVILADEINNLRLLTNFR---AIHRGSFFQDVKVLSPRKLLGESWGFICPVHTPDGSPCG 651 Query: 571 LINSLSVYAQT------NEYGFLETPYR-KVTDGVVTDEIHYLSAIEEGNYVIAQAN--- 620 L+N LS Y + F Y K+ V DE + + E + + Sbjct: 652 LLNHLSQYCCIHNVASNEPHKFNIKMYLKKIGINVNLDETSGIHTVYENQTIPIIVDSVP 711 Query: 621 -SNLDEE--GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV-----GASLIPFLE 672 + + E V L ++ +L S ++ + S+ +I + Sbjct: 712 ITYISENDFKRTVYKLKYAKNHNLYNLKSHFEIIAHLNEQSLMDSITIHTCTGRIIRPIL 771 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV--AVDSGVTAVAKRGGVVQYVDAS 730 + + + V ++ + R + ++ V + Sbjct: 772 NLKMKCIEFISPGYQPYVSIAVNYDDILKNNLARKILKKKENMVNLNSINNTKNTKKMTL 831 Query: 731 RIVIKVNEDEMYPGEAGIDIYN 752 + ++ + E + YN Sbjct: 832 KEQYHFYTNKKHNIEKEAENYN 853 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 26/209 (12%) Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI---NQMPCVSLG 774 + + + D ++ + + +M GI +L + Q P V Sbjct: 939 SFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQ--SLNMFYTFTNKIYRIITPQFPLVVTR 996 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + G + G N VA + + GY+ ED++++++ F T + Sbjct: 997 DYEFYG----------VDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYK 1046 Query: 835 ELACVSRDTKLGPEEITADIP-----------NVGEAALSKLDESGIVYIGAEVTGGDIL 883 P+ + N E L++ G+ I ++ + L Sbjct: 1047 TEVIDLYKKTNSPDFALGNNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPL 1106 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASD 912 + K E K + + S+ Sbjct: 1107 YSYINKKNELTTYEVFKTHGDYYVDCVSN 1135 >UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium RepID=B3L5F6_PLAKH Length = 1539 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 104/482 (21%), Positives = 164/482 (34%), Gaps = 59/482 (12%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + +I+ R I +++ D + + + A Sbjct: 1051 YTGYDMEDALIINKSSAERGIFRTHIYKTIIIDLKKNHGAGDFALGNNVRYTNKNAGTNA 1110 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL-------AEQYDELKHEFEKKLE 1030 A+ K + + D + Q + + +EK E Sbjct: 1111 TSANSTSTAKNNLKFQYEHMGKFLNKDGLPRVQQKMVELNPLYSYVNKASELTVYEKFKE 1170 Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 + + +I + L R GDK A RHG KGV+S++ P EDMP+ E+ Sbjct: 1171 HGEYYVDCVTNYKSTKNQIGIIRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSES 1230 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR-------- 1142 G D++ NP G+PSRM IG ++E+ G AA G +I+A ++ K Sbjct: 1231 GIVPDVIFNPHGIPSRMTIGMLIESICGKAACMYGKRIDATPFRKYTKQKSFNNEWIDNC 1290 Query: 1143 --EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM--PIATPVFDGAKE------ 1192 + G + K S EEV + +K TP + Sbjct: 1291 GVKGFLEQVKQGKNEDGKDSSSHAPGEEVGHSHKGKKKNDIPKGETPKGEKNNITYDEKI 1350 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 +LL G LY G G + + G +Y +L H+ DK R TG Sbjct: 1351 DYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPIC 1410 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK----- 1303 +T QPL GK + GG R GEME L ++G ++ + E + SD V + Sbjct: 1411 NLTHQPLKGKKKHGGIRLGEMERDGLISHGCSFIINERFLINSDGHECFVCPQCGLILSP 1470 Query: 1304 -----------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + K+ +P LL E+ L I I L Sbjct: 1471 IMQFTCSGEMVKGRSIGGRSKVAVCKSCGVSCKI--VYVPYVLRYLLNELICLNITIRLN 1528 Query: 1341 DE 1342 + Sbjct: 1529 IK 1530 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 103/762 (13%), Positives = 220/762 (28%), Gaps = 103/762 (13%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY---------SGNSELQYVSYRL 75 +L+ +D + F+ + I +Y + + + R+ Sbjct: 84 KFLIQSHIDDYNSFVNVYLKNMPENIPVVEFSPKINTYATQNFNSKSTDSIKFYVSDIRI 143 Query: 76 GEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 PV C++ TY + +K+ T +I V G Sbjct: 144 RNPVLKNDKGETRNDYPYLCKLSARTYEGEITLKI---------NRKTNDEIISTTVSAG 194 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNARIIPYRG 181 IP+M + ++ + ++ Q G F S K I+ Sbjct: 195 TIPVMVLSNLCNLSSLSKKMLPQKGEDESLLGGFFVISGHLKVIRYVIHPKYNTILLNDE 254 Query: 182 SWLDFE-FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 + + ++++V K + + ++ I+ Sbjct: 255 NKVHMNCLLNDNSVYVNFLSCPKFDFFTYGARYQNSLMVVPLHIILLLLSPIKKKSYLFN 314 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + ++ E A IE + K + + I VA Sbjct: 315 KMKMGIKNENAVKYIEQYIQSIFMKNGLNEKEVFEKYNLKYLGNSSYFRRGIFRYNVA-- 372 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 E G++I + + ++ ++ +TL + I++ + Sbjct: 373 -PGERKGKIILRYAILPHIQSYSEKFETICMMFKTLIFSKFKLMAKINKDSLENHAVTTC 431 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 S L+ + R F E +YD V + Sbjct: 432 SHLLSNLLKEQILTCLGRLVFRYSRNFYKFYEKKYDSFKVMVKQIYLRYKE--------- 482 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM-----------AENQF----R 465 VM +L + ++ D ++ S ++ ++ F Sbjct: 483 ------MVMDELDEKHLNMVPLEGDDSDISKAADSGNQLAMSNKSEAVKKLKSIFMDEKE 536 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF----------- 514 VE ++E + +L + + I ++ + FF + +S Sbjct: 537 KLFSSVESYIQELYNDNNLFVDISKSFIT---LTMPIIFFFKTGNISSENIGYQQRSGWV 593 Query: 515 --MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 D+ N L IT+ R A+ G +E R + +G +CP+ TP+G GL+ Sbjct: 594 IGADEINSLRFITNFR---AIHRGCFFQEVKVLSPRKLLGEAWGFICPVHTPDGSPCGLL 650 Query: 573 NSLSVYAQT-------NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN--- 622 N LS ++ + ++ +K+ V D+ + I E + +S Sbjct: 651 NHLSQFSYVHNSASNESHKLNIKLYLKKIGVNVNLDDTSGIPTIYEDQTIPILVDSVPIT 710 Query: 623 ---LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 + V L ++ +L + +++ + S+ + P R Sbjct: 711 YISEQDFNRVVYKLKYAKNHNLYNLKAYFEINAYLNEPLLMDSIIINTFP----GRLIRP 766 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 L M + A +P V + + + R Sbjct: 767 LFNLKM-KCIEYISPAYQPYVAIAINYEHIKKNNLARKMLRM 807 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 47/387 (12%), Positives = 106/387 (27%), Gaps = 68/387 (17%) Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK-YTRSNQNTCINQMPCVSLGEP 776 + G + + D ++ + + +M GI N+ +T Q P V + Sbjct: 971 SFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFTNKIYRMITPQYPLVVTRDY 1030 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 G + G N VA + + GY+ ED++++++ + F T + + Sbjct: 1031 ELYG----------VDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRTHIYKTI 1080 Query: 837 ACVSRDT-------------------------KLGPEEITADIPNVGEAALSKLDESGIV 871 + ++ E L++ G+ Sbjct: 1081 IIDLKKNHGAGDFALGNNVRYTNKNAGTNATSANSTSTAKNNLKFQYEHMGKFLNKDGLP 1140 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS--------------- 916 + ++ + L V E + + K + + ++ K + Sbjct: 1141 RVQQKMVELNPLYSYVNKASELTVYEKFKEHGEYYVDCVTNYKSTKNQIGIIRLRTTRPP 1200 Query: 917 ----SLRVPNGVSGTV-----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI- 966 +G G V + F+ G+ D + Sbjct: 1201 LVGDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGMLIESICGKA 1260 Query: 967 ----LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 + + R E +D +LE + + + +E+ Sbjct: 1261 ACMYGKRIDATPFRKYTKQKSFNNEWIDNCGVKGFLEQVKQGKNEDGKDSSSHAPGEEVG 1320 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKI 1049 H + K K+ I +G+ I Sbjct: 1321 HSHKGK---KKNDIPKGETPKGEKNNI 1344 >UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae RepID=Q6E6F3_ANTLO Length = 1014 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 95/433 (21%), Positives = 157/433 (36%), Gaps = 76/433 (17%) Query: 919 RVPNGVSGTVIDVQV--FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 ++P G +G V + + + + + + L+ G+ RI Sbjct: 644 KLPAGQNGMVAVMAYAGYDIEDALIINKGALDRGFGRCEVYRSYKHSLKRYSNGMCDRIS 703 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + GV D ++ E+ + EL + K Sbjct: 704 GSKHSDGVRGPGERVFDGDFFVYKESPTEDADFKFS------GELYKNLSPSVVDKVIVA 757 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 G+D +VK L R+ + GDK + RHG KGVI + P D+P+ E+G DI Sbjct: 758 RSGED-----QFMVKTCLRQVRQPEVGDKFSSRHGQKGVIGLVVPETDLPFSEDGQVPDI 812 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP G ++ KI Sbjct: 813 IMNPH----------------GFPSRMTVGKI---------------------------- 828 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 E++ + G VF ++ +L G+ +G Sbjct: 829 ----------IELISGKAAVFTGRQSDATVFREDITEDLSHILIKHGYSYCGKDTFTNGI 878 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TG+ +E V G +Y +L H+V DKMHARS G +++T+QP GK++ GG R GEME Sbjct: 879 TGDVYEGYVFFGPVYYQRLKHMVADKMHARSRGPRAMLTRQPTEGKSREGGLRLGEMERD 938 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKM-----YKNIVDGNHQMEPGMPESFNVLL 1327 L YGA+ L E L + SD + R + + + MP + +L Sbjct: 939 CLIGYGASAILCERLMISSDVFRAYICHRCGIIVYKNMCTLCKRGDPVPVDMPYACKLLF 998 Query: 1328 KEIRSLGINIELE 1340 +E+ S+ I ++ Sbjct: 999 QELMSMNILPRIK 1011 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 115/812 (14%), Positives = 254/812 (31%), Gaps = 99/812 (12%) Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPA--TIILRALNYTTEQILDLFFEKVIF 230 ++P D + + + + RK+ + + + +L EK Sbjct: 3 TIDVLPEECRLRDLTYCGNIYVDIEYTKHRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDD 62 Query: 231 -EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 E P + G F ++ +V + + + R I ++ K V Sbjct: 63 CETVRETYGHRECPLDMGG---YFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTSVTS 119 Query: 290 EYIAGKVVAKDYIDESTGEL--ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 K + + L + ++ +L L I + + Sbjct: 120 STHDKKSKTSIILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQEGALLEML 179 Query: 348 SETLR---VDPTNDRLSALVEIYRMMRPG-EPPTREAAESLFENLFFSEDRYDLSAVGRM 403 +L + +L AL I ++ RP + A ++ + D + R Sbjct: 180 EPSLEHALQTGVHTQLQALDFISKLTRPRQNVSRIDEARTILYEVVLPNIPNDGIDMRR- 238 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 + +++ L+ +DDID LGN+R G + Sbjct: 239 -----------------KAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELAGNLLSIL 281 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDM-------INAKPISAAVKEFFGSSQLS--QF 514 F +R +K+ + + QD+ + IS + + + +F Sbjct: 282 FEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTVRRF 341 Query: 515 -MDQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 M++ ++ I+ +G + R R +H + +G +CP +TPEG + Sbjct: 342 RMERAGVTQVLSRLSYIAMIGSMAKIQSQFEKTRKISGPRSLHTSSWGMLCPADTPEGES 401 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE--GNYVIAQANSNLD-- 624 GL+ +L++ A+ ++ ++ + + S I+ + + N + Sbjct: 402 CGLVKNLAILAEITT-DVPQSDVEQLLFQLGVRDFRTCSGIDFYSKHSYLIFLNGTIVGI 460 Query: 625 --EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 V V R +G S F + + T + + G + L + R ++ Sbjct: 461 CYNNNTLVRKFVEMRRRGVVSQFVSVYKND-EKRTISIATDGGRICRPLIIVENGRQMLE 519 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSG-----------------------VTAVAK 719 + L G + V+ + + Sbjct: 520 HEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKIALRESNICRSTTHLEICEYSILGC 579 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G++ Y ++ + M G+ + L +Y R + + V +P+ Sbjct: 580 VAGLIPYPHHNQSPRNTYQCAM--GKQAMGFVALNQYRRFDTLLNL----LVYPQKPLVS 633 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 + + +L GQN VA M + GY+ ED++++++ + + Sbjct: 634 TKI---TDIVNFEKLPAGQNGMVAVMAYAGYDIEDALIINKGALDRGFGRCEVYRSYKHS 690 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 + G + + + G+ G V GD V K +P + Sbjct: 691 LKRYSNGMCDRISGSKH----------SDGVRGPGERVFDGDFFVYKESPTEDADFKFSG 740 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 +L + + + V D + +G ++ Sbjct: 741 ELYKNL----SPSVVDKVIVARSGEDQFMVKT 768 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 112/698 (16%), Positives = 228/698 (32%), Gaps = 128/698 (18%) Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN-------- 133 +EC++R +TY + V + + + I ++ V++G++P+M + Sbjct: 8 PEECRLRDLTYCGNIYVDIEYTKHRKV--------IIKKNVFIGKVPIMLRSMLCHLEEK 59 Query: 134 ---------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 G F++ G ERVI+ Q S K V Sbjct: 60 RDDCETVRETYGHRECPLDMGGYFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTSVTS 119 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNYTTEQILDLFFEKVIFE 231 + + S K L+++ + +PA I+L+AL ++ + F + Sbjct: 120 STHDKKSKTS----IILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQ---- 171 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 +E++ L + + +++ ++++ L EV + Sbjct: 172 ---EGALLEMLEPSLEHALQTGVHTQLQALDFISKLTRPRQNVSRIDEARTILYEVVLPN 228 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 I D ID + A + + L A+L+ I+ L + + L Sbjct: 229 IPN-----DGIDMRRKAITVAI--MIRVLLQAELNMISMDDIDFLGNKRFELAGNLLSIL 281 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE--DRYDLSAVGRMKFNRSL 409 D S L + + T++ F NL + + + + R Sbjct: 282 FEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTVRRF 341 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV--GEMAENQFRVG 467 E + +LS+ I ++ + I++ + G R + + G + G Sbjct: 342 RMERAGVTQVLSRLSYIAMIGSMAKIQSQFEKT--RKISGPRSLHTSSWGMLCPADTPEG 399 Query: 468 LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI--- 524 VK L ++ T +PQ + V++F S + F +++ L + Sbjct: 400 --ESCGLVKNLAILAEITTDVPQSDVEQLLFQLGVRDFRTCSGI-DFYSKHSYLIFLNGT 456 Query: 525 ---------THKRRISALGPGGLTRE----RAGFEVRDVH-PTHYGRVCPIETPEGPNIG 570 T R+ + G+ + E R + T GR+C + Sbjct: 457 IVGICYNNNTLVRKFVEMRRRGVVSQFVSVYKNDEKRTISIATDGGRIC-------RPLI 509 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 ++ + + + L Y+ D ++ +L EE N IA + Sbjct: 510 IVENGRQMLEHEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKIA------------L 557 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + CRS ++++ ++ A LIP+ H+ + R M +QA+ Sbjct: 558 RESNICRST-----------THLEICEYSILGCVAGLIPYPHHNQSPRNTYQCAMGKQAM 606 Query: 691 ----------------PTLRADKPLVGTGMERAVAVDS 712 + KPLV T + V + Sbjct: 607 GFVALNQYRRFDTLLNLLVYPQKPLVSTKITDIVNFEK 644 >UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E3T5_TRIVA Length = 1142 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 94/454 (20%), Positives = 161/454 (35%), Gaps = 74/454 (16%) Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 + ++ S ++ + ++ +E + + + LS+ +L+ Sbjct: 741 QTRTIRLSRYHEMPCGQNAMVAIMSYSGHDIEDALLMNKASLDRGFGRRYYLSKLDLMLK 800 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL--GLTDEEKQNQLEQLAEQYDELKHEFE 1026 I + E + P+ L+ + E+ + A +Y L E Sbjct: 801 NYQGGVIGDRIAPLDRERPENIASPQYSLLDADGIIRPGERIEKGMIYANKYVPLNFEES 860 Query: 1027 K--------KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + I +++K+ A RR + GDK + RHG KGVI Sbjct: 861 PVKFMAQPARYNYYPVMIQNVSVYTTETTQVIKIKTADFRRPELGDKFSSRHGQKGVIGL 920 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I P EDMPY E+G D+++NP G ++ K+ Sbjct: 921 IVPQEDMPYTEDGICPDMIMNPH----------------GFPSRMTVGKM---------- 954 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 E++ + G F + +I + Sbjct: 955 ----------------------------IELVSGKVGILTGRIGNGTAFSSDRVKDIADD 986 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L SG+ L G TGE + G ++ L H+V DKM AR+TG +T+QP Sbjct: 987 LIAAGYSYSGKDMLMSGITGEPLYAYIFFGPVFYQSLKHMVKDKMQARATGQVQYLTRQP 1046 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KMYKNI 1308 G+++ GG R GEME L YGAA L E + + SD +V + + Sbjct: 1047 TQGRSRQGGMRLGEMERDCLIGYGAASILYERMLISSDVYEANVCAKCGFIGYEGYCTHC 1106 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + MP + +L E+ ++GI ++ E Sbjct: 1107 KTKEYMKIVRMPYACKLLFYELMAMGIAPKVRLE 1140 Score = 259 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 143/1003 (14%), Positives = 301/1003 (30%), Gaps = 162/1003 (16%) Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 +M N + + RV + R ++ D K + + Y G+ L ++ Sbjct: 62 IMNANKEVIFSENPRVYI----RYKNIYVDRPKIRNQILTPQMCRLSDETYSGNVL-VDY 116 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 D + V K + L + + E Sbjct: 117 DFVNGSTV------KSFNNQCIAKLPIMLQSNRCYLYNASDETFAK-------YDECRYD 163 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 F I +V + + R + + + K V K + + T Sbjct: 164 PGGYFVINGTERVVHVQEQSPYNRILIEHLANGNKTAVVNSSTSTHKTRVELIWKKDTLA 223 Query: 309 L--ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR---VDPTNDRLSAL 363 L + L + + + + L G + +L+ + + A+ Sbjct: 224 LHHNALSEDIPIFVLFRAMGVTSDQEVIQLVDPTGAVGHLLMSSLQEIIKLEISTQDQAI 283 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI--EGSGILS 421 I R ++ +A GR +L Sbjct: 284 QLIERRLKFLTITGIDATREERNMK---------GYKGREFLRSMVLPHIPSTLTDFRRK 334 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 + + + L+ +D D GN+R+ GE+ E F ++++ +S Sbjct: 335 SVFVGFMTRWLLLSAIDPRMIDGRDFFGNKRLELAGELLELLFEDLFKTFNASMQKTVSR 394 Query: 482 --GDLDTLMPQDM---INAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEI 524 + P ++ ++++ I+ +K S SQ + + + L + Sbjct: 395 TINKSKGIDPSNIAQAMHSETITHGLKYAISSGNWNITRFKMMRAGVSQLLGRMSYLQFV 454 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 + RIS+ + + R ++P+ +G +CP +TPEG GLI + ++ + Sbjct: 455 SMVTRISSH----FEKTQKVAGARLLYPSQFGFICPSDTPEGAQCGLIKNFALTVHVTVW 510 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS----------------------- 621 P R+ + +E+ S E N I N Sbjct: 511 ADP-APARRTLLDLGVEELVVFSGEEISNNYIVMLNGEPIGIIDDPYSICRRFRQVRRRH 569 Query: 622 ------------------NLDEEGHFVEDLVTCR-SKGESSLFSRDQVDYMDVSTQQVVS 662 E G L+ K + + DQV+ +++ ++ Sbjct: 570 WVDKFAAIWIVEAKKCINVSTEAGRVCRPLIIVEDHKSKLTQELMDQVNRGEINFDYLLD 629 Query: 663 VGASLIPFLEHDDANRALMGAN-----MQRQAV----PTLRADKPLVGTGMERAVAVDSG 713 G +I +++ ++ L+ N +R+ P + + T +E A G Sbjct: 630 NG--IIEYVDVNEMTDCLIAFNDKDIEEERKNCVNDPPLAKGELRY-FTHLEIHNAQMLG 686 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 V GVV ++ + M G+ I L R +++T N P + Sbjct: 687 VC-----AGVVPCPHHNQSPRNTYQCAM--GKQAIGPTALNIMHRVDKSTYFNCYPQQPM 739 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 V+ + + E+ GQN VA M ++G++ ED++L+++ + ++ Sbjct: 740 ---VQTRTIR----LSRYHEMPCGQNAMVAIMSYSGHDIEDALLMNKASLDRGFGRRYYL 792 Query: 834 QELACVSRDTKLG-----PEEITADIP-NVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 +L + ++ + G + + P N+ S LD GI+ G + G I K Sbjct: 793 SKLDLMLKNYQGGVIGDRIAPLDRERPENIASPQYSLLDADGIIRPGERIEKGMIYANKY 852 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 P + + A + +++ S+ I F R + + Sbjct: 853 VPLNFEESPVKFMAQPARYNYYPVMIQNVSVYTTETTQVIKIKTADFRRPELGDKFSS-- 910 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 G I ++ + + + D Sbjct: 911 --------------------RHGQKGVIGLIVPQEDMPYTE----------DGICPDMIM 940 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 ++ K+ +I G + +K + Sbjct: 941 NPHGFPSRMTVGKMIELVSGKVGILTGRIGNGTAFSSDRVKDI 983 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 104/356 (29%), Gaps = 52/356 (14%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP-IQSYSGNSELQYVSY 73 + P +L L+ +QL+SF FIE GL + I S + ++Y + Sbjct: 31 WNLIPLILKSTGLIKLQLNSFNDFIES------GLTKIMNANKEVIFSENPRVYIRYKNI 84 Query: 74 RLGEPVF-----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 + P Q C++ TYS + V V + ++P Sbjct: 85 YVDRPKIRNQILTPQMCRLSDETYSGNVLVDYDFVNGSTVKSFNNQ--------CIAKLP 136 Query: 129 LMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M G FVINGTERV+ Q Sbjct: 137 IMLQSNRCYLYNASDETFAKYDECRYDPGGYFVINGTERVVHVQEQSPYNRILIEH---L 193 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 + K + ++ + +P ++ RA+ T++Q Sbjct: 194 ANGNKTAVVNSSTSTHKTRVELIWKKDTLALHHNALSEDIPIFVLFRAMGVTSDQ---EV 250 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + V L M + E ++ E ++ D + + + +T I ++ Sbjct: 251 IQLVDPTGAVGHLLMSSLQEIIKLEISTQDQAIQ--LIERRLKFLTITGIDATREERNMK 308 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 E++ V+ + ++ LL F N Sbjct: 309 GYKGREFLRSMVLPHIPSTLTDFRRKSVFVGFMTRWLLLSAIDPRMIDGRDFFGNK 364 >UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenophorea RepID=Q23G41_TETTH Length = 1226 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 144/897 (16%), Positives = 280/897 (31%), Gaps = 128/897 (14%) Query: 203 KLPATIILRALNYTTEQIL------DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 KLP + + E + + F++ + I ++ + ER+ + Sbjct: 183 KLPVMVQSMYCSLAGENLEGRIKHGECQFDQGGYFIIKGSEKVIIAQERMAFNFVYVFQQ 242 Query: 257 AN----GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY--IDESTGELI 310 + + R T + Y K++ +D Sbjct: 243 KDPKMPWIAEIRSIRDKTNAVQSKFALKLKLRDGEYQLYARCKLINEDIPIFVLLKALGC 302 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 ++ E+ + L ++++ + + L L N++ AL+ I Sbjct: 303 VESDKEMMERIFYNLKDPKNEQMMEMLRSSL---------LLAQHCNNKREALIFIG--Y 351 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 R ++ ++ + Y L +G E I +++ Sbjct: 352 RINATTNYRGSQEAMQSAEDTLKLYLLPHIGTQ-----------ESDNDKKLFFIGYMIQ 400 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--------G 482 KL++ GK + DD DH G +R+ G + F+ L ++ K+ L Sbjct: 401 KLLNAALGKTQEDDRDHYGKKRLDMAGALISQLFKERLRIFQKNAKKNLQQKINDISRDA 460 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD--------------QNNPLSEITHKR 528 + D+ + K IS ++ + Q D + + ++H R Sbjct: 461 QKSLNVIVDIFDHKLISDHIRLALATGNWGQTADGEVVKTGVAQVLKRDTSLFATMSHMR 520 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN------ 582 R++A + R +H THYG +CP ETPEG IG++ +LS+ AQ + Sbjct: 521 RVNA----PMKSAAKLARPRQLHNTHYGLICPAETPEGQKIGMVKNLSLLAQVSLGLSSQ 576 Query: 583 -----EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 + E + + ++I Y + + I + ++ R Sbjct: 577 DNLKIQEQLEEQINQFDILNLKLEKIPYQTKVFFNGNWIGFTETP----EQIIDVFKEIR 632 Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD- 696 + FS D ++ + G + P + + + + + Sbjct: 633 RLQKIDGFSIV-RDIINKEIRIYTDQGRGMRPVFTVQEICEGKNRLKITKSKLYAILQQF 691 Query: 697 -----KPLVGTGMERAVAVDS--GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 + L+ G + V+ G D R + E++P Sbjct: 692 EGKAFQKLIDEGFIELLDVEEEEGALIAVDINDFYHTDDPRRTNLPFTHCEIHPAMILGV 751 Query: 750 IYNLTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADGPS------------------ 788 ++ + NQ NT + M ++G + D Sbjct: 752 CASVIPFGHHNQGPRNTLQSAMGKQAMGLNSTNFHMRLDTLCHILYYPQIALASSKSLQY 811 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 ++ +G N VA + GYN EDSI++++ + F +I + + +G Sbjct: 812 ITAKDIPIGSNAVVAIACFTGYNQEDSIIINQSAIDRGLFRSILYRTYKTTEKKEHMGLN 871 Query: 849 EITADIPNVGE--------AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + I E + KLD GI+ G +VTG D+L+GKV +T+ + Sbjct: 872 PVIEHIRFPDEKKTIIPASYSFLKLDYDGIIPPGTQVTGEDVLIGKVVELPKTEGS---- 927 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 KD SL G V V + + + K Sbjct: 928 ---------DKQYKDVSLGCRRSEIGYVDTVILSEDKDGMYIVKVKLRSNRIPQIGDKFA 978 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT--DEEKQNQLEQLA 1015 S Q G+ R + +L P + + E ++L L Sbjct: 979 SRHGQKGTCGMTIRGEDLPYNIEGIIAELVINPHCIPSRMTIGHMIEGLNSKLSSLK 1035 Score = 274 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 91/437 (20%), Positives = 153/437 (35%), Gaps = 78/437 (17%) Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 D + + +++ + KK+ ++E F + ++ KL Sbjct: 837 DSIIINQSAIDRGLFRSILYRTYKTTEKKEHMGLNPVIEHIRFPDEKKTIIPASYSFLKL 896 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK- 1048 D ++ ++ +L + K + L +R +I D + K Sbjct: 897 DYDGIIPPGTQVTGEDVLIGKVVELPKTEGSDKQYKDVSLGCRRSEIGYVDTVILSEDKD 956 Query: 1049 ---IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 IVKV L R Q GDK A RHG KG ED+PY+ G ++V+NP Sbjct: 957 GMYIVKVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGEDLPYNIEGIIAELVINP----- 1011 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 H + IG I + + Sbjct: 1012 ----------HCIPSRMTIGHMIEGLNSKLSS---------------------------- 1033 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 KG+ F G K +I L G LY+ TG + + Sbjct: 1034 -----------LKGIWGDATPFSGIKLQDIASELHTYGYQRYGNEVLYNPYTGMRLSTQI 1082 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G + +L HLVDDKM++RS G + +QP G+++ GG RFGEME + A+G + Sbjct: 1083 YYGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGGLRFGEMERDCIIAHGTSN 1142 Query: 1286 TLQEMLTVKSD----DVNGRTKM------------YKNIVDGN----HQMEPGMPESFNV 1325 L+E SD V R + G+ ++ +P + Sbjct: 1143 FLKERTFGVSDQFRTHVCSRCGLFAKADVTNHKYDCTGCSQGDKKHYKIVQVYLPYAAKQ 1202 Query: 1326 LLKEIRSLGINIELEDE 1342 L++E+ ++ I ++ + Sbjct: 1203 LIQELMAMHIVPRIKVD 1219 >UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9FCT0_ORYSJ Length = 1185 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 156/1019 (15%), Positives = 312/1019 (30%), Gaps = 224/1019 (21%) Query: 6 TEKKRIRKDFGKRPQVLDVP-----------------YLLSIQLDSFQKFIEQDPEGQYG 48 + K R + + P + +P L+S Q++S+ +F+ G Sbjct: 62 DDGKGKRDSYAQIPVDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSH------G 115 Query: 49 LEAAFRS-----VFPIQSYSGN-------SELQYVSYRLGEPVFDVQECQIRGVTYSAPL 96 L+ F S V P S + +++ +L EPVF C Sbjct: 116 LQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGC----------- 164 Query: 97 RVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF 156 + E ++K + MT + + +V Sbjct: 165 -----------DIDEQSLKLKPRH----ARLQNMTYSSKMKVEVHFQVYSM--------- 200 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 + + K Y II + ++ I R LP ++ Sbjct: 201 -EKSDKAKTGNDKFGYKRNII-------------NETYYINIGR---LPVMVMSNLCWLH 243 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 + D F+ + + ++ + E+ + V R +I+ Sbjct: 244 KLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKL 303 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 ++ + + D S G++I + + ++ + G + + Sbjct: 304 IDSANNE-------------------DASGGKIISISFLYANMPIWLMFFALGISSDKDI 344 Query: 337 F--TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDR 394 F N D + T+ T L E +R R+ + L +N F Sbjct: 345 FDVINMEDCDACVINTI--TATIKESDELCEGFRKSDK----ARQYVDELIKNSKFPPAE 398 Query: 395 YDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 + + F + ++K L+ GK + D+ D N+R+ Sbjct: 399 PFDDYIAKYLFPSISGNRN-------KALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 451 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSL---GDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 GE+ + R + ER + + L + + ++A I+ + F + Sbjct: 452 LAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSW 511 Query: 512 SQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + + NPL I+ R+ + + R +P+++G++ Sbjct: 512 CHPYKRNERCAGIVATLRRTNPLQMISDLRK----TRQRVAYAGKAGDARYPNPSYWGKL 567 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 C + TP+G N GL+ +L+V A + R ++ G +++H + E Sbjct: 568 CFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCG--MNKLHEIPTEEVPRMDKIF 625 Query: 619 ANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 N + + FV L R G + D +V S ++ L Sbjct: 626 LNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQ-REVRVFSDAGRILRPLLVV 684 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG--VVQYVDASRI 732 + + + L + + G+E + S V ++ Sbjct: 685 ENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKA 744 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG------ 786 N + G GE ++AD Sbjct: 745 EDVFN----VKRKIG--------------------------GEVSGYTHLIADCIGRSEY 774 Query: 787 -----PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 E GQN VA G+N EDS++++ ++ F T H + Sbjct: 775 TFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEV- 833 Query: 842 DTKLGP---------EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 + K GP ++I + LD+ G+ Y+GA + GDI++GKV+ GE Sbjct: 834 ENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGE 893 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 D S+++ + G V + + + K+ + + ++ Sbjct: 894 ----------------------DHSIKLKHTEKGMV-QRVLLSANDEGKNFAVVTLRQV 929 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 95/492 (19%), Positives = 168/492 (34%), Gaps = 94/492 (19%) Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDV-KDSSLRVPNGVSGT-----VIDVQVFTRDGVE 940 V K +++ L+ G + P +G V Q F ++ Sbjct: 750 VKRKIGGEVSGYTHLIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSL 809 Query: 941 KDKRALEIEEMQLKQAKKDLSEE---LQILEAGLFSRIRAVLVAGGVE--AEKLDKLPRD 995 RA M + ++ E +++ + G ++ ++D L D Sbjct: 810 VMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDD 869 Query: 996 RWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 +G + + + +++E + +K + +K +R ++ D+ V Sbjct: 870 GLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDE----GKNFAVVT 925 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R GDK + HG KGV+ + E+ P+ G DIV+NP P+R GQ+L Sbjct: 926 LRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLL 985 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 E LG G A + + + +A Sbjct: 986 EAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWG------------------- 1026 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 A V +G + L + +G + Sbjct: 1027 ---------AESVLNGRTGERMHSL--------------------------IFMGPTFYQ 1051 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L + Sbjct: 1052 RLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFM 1111 Query: 1294 KSD----DVNGRTK-------------------MYKNIVDGNHQMEPGMPESFNVLLKEI 1330 SD V + + + +P +L +E+ Sbjct: 1112 LSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL 1171 Query: 1331 RSLGINIELEDE 1342 S+GI + E E Sbjct: 1172 FSMGICLRFETE 1183 >UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lunularia cruciata RepID=Q1L6W1_9MARC Length = 789 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 93/471 (19%), Positives = 159/471 (33%), Gaps = 90/471 (19%) Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 IF + + V + N ++D G+ + + + + + Sbjct: 374 IFSGQNAIVAIACYTGYNQEDSIIMDQSAL-DRGMFRTQHYRTFKSEERSDHETFGKPSA 432 Query: 965 QILEAGLFS-RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 G + R +L G+ + D + +T +K Q A D Sbjct: 433 ADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGKIVTHSQKNTQSADSARLVDTSTR 492 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + + I D+ KI KV L R Q GDK + HG KG++ + E Sbjct: 493 LKAHEKGRVEQVILVQDEEGK---KIAKVKLRETRIPQVGDKFSRMHGQKGIVGMVFTQE 549 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 D+P+ G DI++N H + + +G + L + Sbjct: 550 DLPFTNEGIVPDIIIN---------------PHAFPSRQTLGQMCESALGK--------- 585 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 A R ATP + I E L Sbjct: 586 -----------------------------AIAKRGEQLFATPFNPASTVESITEALHESG 616 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G +Y+G TG+ + +G + +L H+V+DK+ RS G +T+QP+ + Sbjct: 617 YNGWGMETMYNGYTGKAMVAKIFIGSTFYQRLTHMVEDKIKYRSRGHVHPLTRQPVSDRK 676 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---------------MYKNI 1308 + GG +FGEME L A+GAA TLQE SD + Sbjct: 677 RHGGVKFGEMERDCLIAHGAAATLQERTFHLSDYHEIHICRSCKQMAHMGIDRIPTCRFC 736 Query: 1309 V-----------------DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ +P + +L++E++S+GI++ L+ E Sbjct: 737 KEKNKKVVKGKKTDKTETKVEEIVKVEIPYACKLLIQELQSMGISVGLDTE 787 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 86/580 (14%), Positives = 195/580 (33%), Gaps = 76/580 (13%) Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFF------GSSQLSQFMDQNNPLS 522 R+++ + + L +D + +I ++ + +S + + ++NP+S Sbjct: 10 KRLQKHLSKNQELSSIDKYVEDKVITRGFRNSFSSGNWMGHDLMKNSGIVFDLKRSNPIS 69 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 + R + P + + G + R + +GRVCPI+TP+G GL+ ++++ + Sbjct: 70 TLCQLRELRQYVPPTV---KVGEDARHPTFSQWGRVCPIDTPDGEACGLVKNMALTGIVS 126 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH------FVEDLVTC 636 G E P + + +++ G + N ++ L Sbjct: 127 SAG-TEAPVIDFLESNGMIPLESVTSDTLGMVMKVFVNGRWLGVVKHTHFEPIIKGLRAL 185 Query: 637 RSKGESSLFSRDQVDYMDVS-TQQVVSVGASLIPFLEHDDANRALMGAN----------- 684 R + ++ + +V + QV + ++ L N+ + + Sbjct: 186 RKRPPTAELYQMEVVIIRPKFEIQVSTDSGRVLRPLLVVRHNKMNLNQDSVTQYISEKRG 245 Query: 685 ---------MQRQAVPTLRADKPLVGT------------------GMERAVAVDSGVTAV 717 +Q+ + L ++ +E + A + Sbjct: 246 LPHERFTWFLQKHVIELLGVEEEEKALIALHGADLEKANGLQSRKTVEFSHAEIHPSLIL 305 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 V+ + ++ + + + I +Y R++ + P V + Sbjct: 306 GLSASVIPFPHRNQSSRNLFQ-AHKHSKQAIGVYVTNLACRADTSGQHLFYPQVQ----L 360 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + +++ E+ GQN VA + GYN EDSI++ + + F T H + Sbjct: 361 VKTNIVN---CLQKDEIFSGQNAIVAIACYTGYNQEDSIIMDQSALDRGMFRTQHYRTFK 417 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSK---LDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 R + +A + G A+ L++ G+ YIG + D++VGK+ + Sbjct: 418 SEERSDHETFGKPSAADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGKIVTHSQ-- 475 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 + ++ + D+S R+ G V V + + +K + E + Sbjct: 476 --------KNTQSADSARLVDTSTRLKAHEKGRVEQVILVQDEEGKKIAKVKLRETRIPQ 527 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 K Q G+ + + P Sbjct: 528 VGDKFSRMHGQKGIVGMVFTQEDLPFTNEGIVPDIIINPH 567 >UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=Euryarchaeota RepID=RPOB1_METVS Length = 611 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 104/462 (22%), Positives = 169/462 (36%), Gaps = 102/462 (22%) Query: 917 SLRVPNGVSGTVID---------VQVFTRDGVEKDKRA-----LEIEEMQLKQAKKDLSE 962 S N VI+ F R +KR + E + E Sbjct: 213 SYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEE 272 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 + L + + + +G V K E+ L + Q + + ++ E Sbjct: 273 AYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQEITLQTKS-QRRDTSVTIRHGEEG 331 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 + + ++ ++ KV + R + GDK A RHG KGVI + P Sbjct: 332 -VVDLVILSE----------TKEGNRLGKVRVRDLRVPEFGDKFASRHGQKGVIGLVVPQ 380 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 ED+P+ E+G D+++NP H + IG + + + + R Sbjct: 381 EDLPFTEDGVIPDLIINP---------------HAIPSRMTIGQVLEMIGGKVGSLECRR 425 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 + +F G E ++ L+ Sbjct: 426 ---------------------------------------VDGTIFSGEGEWALRHALENY 446 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 SG+ +YDG+TG + E + VG Y KL+HLV K+HARS G ++T+QP G+ Sbjct: 447 GFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGR 506 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN--------------- 1307 A+ GG RFGEME L A+GAA L+E L +SD Sbjct: 507 AREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCP 566 Query: 1308 -------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 I D + +F +LL E++S+GI+ +L+ + Sbjct: 567 VCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLKLK 608 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 68/418 (16%), Positives = 138/418 (33%), Gaps = 54/418 (12%) Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL---EHDDANRALMGANMQ 686 +E G+ S+D + V + ++ L P ++++N + + Sbjct: 1 MEKQANVYVNGKLIDTSKDPENL--VKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGG 58 Query: 687 RQAVPTLRADKPLVGTGME--RAVAVDSGVTAVAKRGGVVQYVDASRIV---IKVNEDEM 741 R P + + E V + + GV++++DA I + DE+ Sbjct: 59 RAVRPLVVVENGFSKLTNELLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEI 118 Query: 742 YPGEAGIDIYNL------------TKYTRSNQNTCINQMPCVSLGEPVERGDVLADG--- 786 ++I L ++ + + T M SLG P+ D Sbjct: 119 TFENTHVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGH 178 Query: 787 ---------------PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 + GQN VA M + GYN ED+ ++++ ++ + Sbjct: 179 LLHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRST 238 Query: 832 HIQELACVSRDTKLGPEEITADIPNVG------EAALSKLDESGIVYIGAEVTGGDILVG 885 + + G + ++P G E A L + G++ + +EV GD+++G Sbjct: 239 FFRSYESFEKRYPGGQLD-KFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILG 297 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 K +P + + I + S +D+S+ + +G G V V + + + Sbjct: 298 KTSPPRFLEE-------QEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGKV 350 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + K S Q GL + L P + + Sbjct: 351 RVRDLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIG 408 >UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7F6Y6_SCLS1 Length = 1165 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 95/498 (19%), Positives = 160/498 (32%), Gaps = 115/498 (23%) Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGT-VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 L +G +S+ +G + D + + E+ I + + + ++ Sbjct: 717 LHNDYGFDNFPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKYELEEGH 776 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 A ++ G V+AE + D +G + DE Sbjct: 777 KSR----SARNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAAWHTVSMDE 832 Query: 1021 LKHEF------------EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 E ++ G++ + + V L + R GDK + Sbjct: 833 NGKYVNRDGQTHFEKYKETEIAFIEEVRLIGNENGIEPCQAISVKLRIPRSPVIGDKFSS 892 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KGV S+ P DMP+ E+G D ++NP PSR IG + Sbjct: 893 RHGQKGVCSQKWPAVDMPFTESGIQPDTIINPHAFPSR---------------MTIGMFV 937 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 ++ + GA D + F +E + Sbjct: 938 ESLAGKA----------------GALHGLAQDSTPFKFDEEHKAG--------------- 966 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 L G +Y G TGE+ + +G +Y +L H+V+DK R+T Sbjct: 967 ----DYFGHQLMKAGYNYYGNEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKYQVRTT 1022 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG-------- 1300 G + +T QP+ G+ + GG R GEME +L A+G A+ LQ+ L SD Sbjct: 1023 GPVTQLTGQPIKGRKKGGGIRVGEMERDSLLAHGTAFLLQDRLLNCSDYTKSWICKECGT 1082 Query: 1301 ---------------------RTKMY-------------------KNIVDGNHQMEPGMP 1320 R + + V G +P Sbjct: 1083 FLSTQPTVSAFASKKKGTGVVRCRKCATRAEGKFGGGEVWEDGKGQRWVGGEDTTVVAVP 1142 Query: 1321 ESFNVLLKEIRSLGINIE 1338 L E+ ++GI ++ Sbjct: 1143 GVLKYLDVELAAMGIKLK 1160 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 108/801 (13%), Positives = 223/801 (27%), Gaps = 160/801 (19%) Query: 158 DSDKGKTHSSGKVLYNARIIPYRG---SWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 + K R + YRG + +++ + D D + LP ++ + Sbjct: 107 NKFSTKNREILPAECRERHVTYRGKMSARMEYSINNGDPKEFIRDLGQ-LPLMLMSNKCH 165 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQ---MELVPERLRGETASFDIEANGKVYVEKGRRITA 271 L K E +E + L +F + + +G T Sbjct: 166 LQNNSPAQLVQNKEESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPAYTE 225 Query: 272 -----RHIRQLEKDDVKLIEVPVE-YIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 R +R + ++ + + + + +I A +E + + + Sbjct: 226 FGMLIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEG 285 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR--PGEPPTREAAES 383 T T D + T + + + R G P T Sbjct: 286 LVGTPGSKGTDNTFLNDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGVPDTMSN--- 342 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLL--REEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 YD+ K L E ++ + +KL + G Sbjct: 343 -----------YDVGTEFLRKIVLVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDCA 391 Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVR-----VERAVKERLSLGDLDTLMPQDMI--- 493 D+ D + N+ I G + + L + A+++ + + + + + Sbjct: 392 GDNPDAVQNQEILLGGFLFGMIIKERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKDF 451 Query: 494 -------NAKPISAAVKEFFGSSQLSQ--------------FMDQNNPLSEITHKRRISA 532 + + A++ F + L ++ N L I H R I Sbjct: 452 PVKICSRTNEQVGGALEYFMSTGNLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFRMI-- 509 Query: 533 LGPGGLTRERAGFEVRDVHP---THYGRVCP--IETPEGPNIGLINSLSVYAQTNEYGFL 587 G + V P + G V T E + L + + + + Sbjct: 510 -HRGSFFAQLKTTTV--PLPKLLSELGVVSTGSSSTDESVVVQLDGKIMGWCSPKQSLVI 566 Query: 588 --ETPYRKVT--DGVVTD-EIHYLSAIEEGNYVIAQANS-------NLDEEGHFVEDLV- 634 Y KV GV T+ EI Y+ G Y ++ + ED V Sbjct: 567 ADTLRYWKVEGTHGVPTNLEIGYIPNSHGGQYPGIYLSAAPARMVRPVKYLALDKEDFVG 626 Query: 635 TCRSKGESSLFSRDQVD-----YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 S + +++ +++ ++S+ A++ PF + + + R + M +Q+ Sbjct: 627 PLEQPFMSIAVTEQEIEAGEHTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQS 686 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 + GT + I + + Sbjct: 687 M----------GT-------------------------PGTAIRYRTDNKAYRLQTG--- 708 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Q P V + G G N VA + + G Sbjct: 709 -----------------QTPIVRAPLHNDYG----------FDNFPNGMNSVVAVISYTG 741 Query: 810 YNFEDSILVSERVVQEDRFTTIHI--QELACVSRDTKLGPEEITADIPN-----VGEAAL 862 Y+ +D++++++ + ++ I V Sbjct: 742 YDMDDAMIINKSAHERGFGHGTIYKTKKYELEEGHKSRSARNIKKLFGFAPGGLVKAEWK 801 Query: 863 SKLDESGIVYIGAEVTGGDIL 883 + +DE G+ +IG V GD++ Sbjct: 802 AAIDEDGLPFIGRMVQNGDLI 822 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 61/415 (14%), Positives = 118/415 (28%), Gaps = 66/415 (15%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRS--------VFPIQSYSGNSELQ--YVSYRLGE 77 ++ ++SF E+D GL + P ++ +V + Sbjct: 45 VAPHIESFNALFEKDGLIAQGLLDIGSKTYLDGDDRLGPSGKNRLTVRIKEVFVEKSMLP 104 Query: 78 PV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 P EC+ R VTY + ++ I G K+ +G++P Sbjct: 105 PSNKFSTKNREILPAECRERHVTYRGKMSARMEYSI-----NNGDPKEFIRD---LGQLP 156 Query: 129 LMTDN------------------------GTFVINGTERVIVSQLH--RSPGVFFDSDKG 162 LM + G FV+NG E++I + R+ + Sbjct: 157 LMLMSNKCHLQNNSPAQLVQNKEESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSF 216 Query: 163 KTHSSGKVLYNARIIPYRGSWLD----FEFDPKDNLFVRIDRRRK---LPATIILRALN- 214 K + I R + N+ R R+ +PA +IL+AL Sbjct: 217 KGRGPAYTEFGMLIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVE 276 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 ++I + + DN + V LR A + + + Sbjct: 277 TNDKEIFEGLVGTPGSKGTDNTFLNDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGV 336 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYI---DESTGELICAANMELSLDLLAKLSQSGHK 331 + E + + + + D+ +++ +L + + Sbjct: 337 PDTMSNYDVGTEFLRKIVLVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPD 396 Query: 332 RI--ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL 384 + + + G I E L AL + R T E + Sbjct: 397 AVQNQEILLGGFLFGMIIKERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKDF 451 >UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 3 RepID=RPB2_IIV3 Length = 1140 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 136/956 (14%), Positives = 300/956 (31%), Gaps = 143/956 (14%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLG 76 L+ Q+++F FI + GL+ + I+ N L++ + + Sbjct: 23 VADYFKTNGLVKHQIETFNHFISK------GLKTIINNESSIKYQSHDNYSLKFTNIYVE 76 Query: 77 EPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 P QE + + ++Y+ + V + + + ++ V + + Sbjct: 77 YPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNV--IEMVENKEGKPPQISEQYRVPIAK 134 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 IP+M + H S ++++ HS F Sbjct: 135 IPIMLGSDVC-------------HLSKYTPLENEQINGHSQADQGGY------------F 169 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 + K+ + + R+ +++ + + ++ + + + V ++ Sbjct: 170 IINGKERVLISQVRKAYNKPVCFVKSTSQKEDVLIC-----EMRSMCEETFHSTSVQVKM 224 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 ++ K+ + L + ++ + YID Sbjct: 225 IKNKIMVSLKLKRKLI----DIPVGIVFKCLGYNPDQMGSKFRSLFNLPPEYEKYIDAIK 280 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 + + +++ + D+ +V++ Sbjct: 281 NDCLEEFAYGIAVSAAD------------------GDNSDSGGESGGEEEADQEEHIVKV 322 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 +R M A + D+ M L + D + Sbjct: 323 FRNMSTSVDKDGGMAATGIT-------IEDVQKSLDMDLFPHLGI---TSTRKQRVDLLA 372 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDL 484 ++KK + K VD+ D ++R+ + GE+ FR+ + ++ ++ D+ Sbjct: 373 FMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYKKFQKTCITQIRNRKPDI 432 Query: 485 DTLMPQDMINAKPISAAVKEFFG-------SSQLSQFMD-QNNPLSEITHKRRISALGPG 536 + I + + ++G + +SQ ++ + + L+ + RR+ + Sbjct: 433 SNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQVVNPKVSLLANYSSLRRV-VIPES 491 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 +E E+R +HP+ VCP+ETPEG +G + +++V+ Q G D Sbjct: 492 KDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFCQVTT-GISTCEIMDQID 550 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 D + + + N ++ N + GH + + V + Sbjct: 551 SFGVDLKCHCTIKDPNNCLLLLINGSPYGNGH----ANVIHRLNFLNDTNISIVVNRALG 606 Query: 657 TQQVVSVGASLIPFLEHDDA-----------------NRALMGANMQRQAVPTLRADKPL 699 ++ S I + D N+ + ++ A ++ + Sbjct: 607 VIEIFSDAGRFIRPIFDLDKICNFEGEIVPSFKWFLDNQLIRYIDINEAAANSIAIELRD 666 Query: 700 VGTGMERAVAVDS--GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 + T + G++ + D ++ M G + K Sbjct: 667 LSTNPNTRYNLMELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIGFVPCHNLKTE 726 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 + Q P V+ E + E G N VA + GYN EDSI+ Sbjct: 727 TVSHTLNYPQKPLVTT-SFAEYNQL---------NEYPNGINAIVAIACYTGYNQEDSII 776 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPE--EITADIPNVGEAALSKLDESGIVYIGA 875 +++ + F TI + + E EI ++ + + + GIV + Sbjct: 777 LNKSSIDRGLFGTITYNTFTAQEKKNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRLRQ 836 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 V GD+L+ KVT K + Q + DSS+ V +G G V + Sbjct: 837 RVKKGDVLICKVTIKNKNQD---------------EKLVDSSVIVQHGEEGYVDRI 877 Score = 279 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 168/444 (37%), Gaps = 80/444 (18%) Query: 920 VPNGVSGTVI----------DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 PNG++ V D + + +++ Q KK+ E +I Sbjct: 753 YPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEKKNGIIEERIEIP 812 Query: 970 GLFSRIRAV---LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 +IR LV ++ + L +T + K Q E+L + ++H E Sbjct: 813 SNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKNKN-QDEKLVDSSVIVQHGEE 871 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 ++ + G +IVKV + R + GDK KG I P EDMP Sbjct: 872 GYVDRIVDNVIDG-------CRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMP 924 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 + +G DI++NP +PSRM I QI+ T +G Sbjct: 925 FTASGMTPDIIINPNCIPSRMTINQIISTVMGK--------------------------- 957 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 + + N R + E+ LKL Sbjct: 958 ----------------------LYTVNPNPRFRNGNSFQENSNTILKELCHHLKLNGFDP 995 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 SG +Y G TGE+ + + +G Y +L H+V DKMHARS G + + +QP G++Q G Sbjct: 996 SGSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGG 1055 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMY------KNIVDGNHQME 1316 G RFGEME + +GA L E + + SD DV M + + Sbjct: 1056 GLRFGEMEKDCILVHGATQFLNERMFLNSDPFQIDVCKDCGMMSSTSKKCHHCGSINVKR 1115 Query: 1317 PGMPESFNVLLKEIRSLGINIELE 1340 +P S LL+E+ +GI +++ Sbjct: 1116 CNIPYSCKNLLQELNGMGIKTKID 1139 >UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF17_TRIAD Length = 617 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 171/316 (54%), Positives = 231/316 (73%), Gaps = 10/316 (3%) Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 TCINQ P V +G+ VE GD+LADG STD+GELALG+N+ VAFMPWNGYNFEDSIL+SER Sbjct: 302 GTCINQRPIVKVGQYVEAGDILADGASTDMGELALGKNILVAFMPWNGYNFEDSILLSER 361 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 +V++D +T++HI E V+RDT+LGPEEIT DIPNV E L+ LDE+GIV IGA+V GD Sbjct: 362 LVKDDIYTSVHINEYEIVARDTRLGPEEITRDIPNVNEENLTHLDETGIVNIGAQVKPGD 421 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 ILVGKVTPK E+ LTPEEKLLRAIFGEKA+DV++SSLRVP G G ++DV++FT+ GV+K Sbjct: 422 ILVGKVTPKTESPLTPEEKLLRAIFGEKAADVRNSSLRVPPGEKGVIVDVKIFTKRGVQK 481 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG----------VEAEKLDK 991 D+RA+ IE ++++ KD+ +E +I+E +F++++ +L ++ LD Sbjct: 482 DERAISIERNEIEKFSKDMEDEKRIIEDYVFNKVKVILFGKKVKDKSNKSITIDQNFLDD 541 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 L + L L D++ + +++L E YD + EK + K K+ GDDL GVLKI+K Sbjct: 542 LDNKQVWSLELDDKKSKEDIQKLEEFYDNYLKKLEKDYKHKVEKLQSGDDLPQGVLKIIK 601 Query: 1052 VYLAVKRRIQPGDKMA 1067 +Y+A K +IQPGDKMA Sbjct: 602 IYVANKLKIQPGDKMA 617 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 133/292 (45%), Positives = 203/292 (69%), Gaps = 1/292 (0%) Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-IAGKVVAKDYIDESTGELICAAN 314 ++ +KG R+T R ++ EK++ + E I K +AKD ++ +TGE++ + Sbjct: 10 ANTKEIIFKKGIRVTPRILKDFEKNNTDRYYITTEDDIKRKFLAKDIVNLTTGEVLYEST 69 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 E++ +++ + I + N++D G +I +T+ +D D AL +IY+++RPGE Sbjct: 70 QEVTQEIIDSVKALNINEIVIIDVNNVDSGSFIRDTIVLDKNKDEEQALADIYKVLRPGE 129 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 P T E A+ LFE++FF ++YDLSAVGRMK N+ + + L+KDDII ++K L++ Sbjct: 130 PSTPEVAKQLFESMFFDNEKYDLSAVGRMKINKKHDLDVPHTTTALTKDDIIVIIKHLLN 189 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 ++ G G VDDID L NRR+RSVGE+ ENQFR+GLVR+++++ +R+S ++D +MP D++N Sbjct: 190 LKCGIGTVDDIDSLANRRVRSVGELVENQFRMGLVRMQKSIVDRMSSVEIDNVMPHDLVN 249 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 +K + + ++EFFG SQLSQFMDQ NPL+EITHKRR+SALGPGGLTRERAGFE Sbjct: 250 SKTLMSYLREFFGISQLSQFMDQTNPLAEITHKRRLSALGPGGLTRERAGFE 301 >UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LW27_BIGNA Length = 1159 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 128/879 (14%), Positives = 289/879 (32%), Gaps = 116/879 (13%) Query: 249 ETASFDIEANGKVYVEKGRRITARH--IRQLEKDDVKLIEVPVEYIA-----GKVVAKDY 301 E F I N KV V + R + + ++ +++ Y + G +V Sbjct: 176 EGGYFIINGNEKVLVAQERLVKNKVYIFSKIFDKKTRVMAQCRSYDSSLYNQGYMVYLKL 235 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + + + + + + L + + L + I ++ + +N + Sbjct: 236 VTDKSNNPNQCSEITVKIASLR----AEIPLVILLKFLGFKNDKEIINSIFKNNSNSKKL 291 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFF---SEDRYDLSAVGRMKFNRSLLREEIE--G 416 ++ + + T A + F + + D R ++ LL Sbjct: 292 NMLYN-SFLGVTKVQTISHALRYIVDRSFSKSNNKKLDPEKTAREIIDKKLLPHMGTSIN 350 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 S I + +LI+ N + DD D N+R+ G + + F + R + VK Sbjct: 351 SRFRKGLFICYMAHRLINTLNEIEQPDDKDSYKNKRVDISGHLFSSLFNNLIKRSIKDVK 410 Query: 477 ERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLS 522 +L + D +++ ++ ++ + + SQ +++ + LS Sbjct: 411 NQLLKKVKKSDATELEELFSSNILTNGFRYSLATGNWIIDGMLDYKTGVSQVLNRMSYLS 470 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 I+H R+++ T ++R VH +++G VCP+ETPEG G++ + + A Sbjct: 471 MISHLSRLNS----SYTSNGKILDIRRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVT 526 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 ++ + ++ I+ + ++ G ++ + S + Sbjct: 527 NSHHIQKNIIQFLKKIMIKNSFTKPMIKTKKDK---PDISIFVNGSWIGNTFEYFSLMKY 583 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT--LRADKPLV 700 + R Q ++ V + ++ R + ++ R P L+ Sbjct: 584 LITLRRQ----EIIPFDVS--------IVFNEKNKRIFIWSDPGRIKRPLFVLKNSNSFF 631 Query: 701 GTGME---RAVAVDSGVTAVAKRGGVVQYVDASRI-------------VIKVNEDEMYPG 744 +E + + + + +V+Y+D I + V++ ++Y Sbjct: 632 NHSIEKIAKKIKDNFHRWYFYIKNSIVEYLDTEEIENIVIKLNYYNNTELIVDQTQIYKK 691 Query: 745 EAGIDIY-------------NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP---- 787 +++ +S +NT + M ++G + D Sbjct: 692 MINFSEIHASSILGVSASQVPFSQHNQSPRNTYQSSMGKQAIGINYSNFQLRYDTQINIL 751 Query: 788 --------------STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 E+ G N +A + ++G+N EDS++++ V+ F TI Sbjct: 752 ESNQRPLVFTIQKLCLRGQEMPSGINTIMAILSYSGFNQEDSLIINHSSVERGLFRTIIY 811 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 + A R+ I + L LD G I V G D+L+ K Sbjct: 812 KTFA--ERENTNVNGIIEKIELESKSSNLFGLDIDGTRKIETLVNGDDVLISKTIKLTGK 869 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK--DKRALEIEEM 951 G+ + S L++P G V + +G K R I E Sbjct: 870 -------------GDTKVNTIHSDLKLPLNSQGVVDSIMYSLDEGGYKIIKVRIRSIREP 916 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + L + I+ + ++ + +G E +++ Sbjct: 917 VIGDKFSSLHGQKGIIGYSYRQSLLPTTATSVTPDLIMNPHAIPSRMTIGHMIEMLMSKV 976 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 + + + E + +++ G+ K++ Sbjct: 977 SSHSGKLGDATAFSEGNIGKIIGHLSKFGIHHFGLEKMI 1015 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 152/444 (34%), Gaps = 77/444 (17%) Query: 920 VPNGVSGT--VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 +P+G++ ++ F ++ + + K +E G+ +I Sbjct: 772 MPSGINTIMAILSYSGFNQEDSLIINHSSVERGLFRTIIYKTFAERENTNVNGIIEKIE- 830 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 L + LD + L D+ ++ +L + D + L+ Sbjct: 831 -LESKSSNLFGLDIDGTRKIETLVNGDDVLISKTIKLTGKGDTKVNTIHSDLKLPLNSQG 889 Query: 1038 QGDD----LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 D L G KI+KV + R GDK + HG KG+I +P Sbjct: 890 VVDSIMYSLDEGGYKIIKVRIRSIREPVIGDKFSSLHGQKGIIGYSYRQSLLPTTATSVT 949 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 D+++NP +P + IG I ++ + Sbjct: 950 PDLIMNPHAIP---------------SRMTIGHMIEMLMSKVSS---------------- 978 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 G F +I L + G ++ Sbjct: 979 -----------------------HSGKLGDATAFSEGNIGKIIGHLSKFGIHHFGLEKMI 1015 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 G G+ ++ + VG +Y +L H+V DK +RS G Y ++T+QP+ GK + GG RFGEM Sbjct: 1016 SGFNGDILQKSILVGPIYYQRLKHMVVDKFFSRSRGPYEILTRQPVEGKTREGGLRFGEM 1075 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTK---------------MYKNIVDGNHQMEPG 1318 E + ++G++ L+E L +SD + I + Sbjct: 1076 ERDCVLSHGSSLFLKERLMDESDKFRVHICEKSGLFCPANLKTQTFWSTIYHSKSICQIF 1135 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +P + +L +E+ ++ I L + Sbjct: 1136 IPYACKLLFQELIAMCIAPRLVVK 1159 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 98/751 (13%), Positives = 243/751 (32%), Gaps = 128/751 (17%) Query: 28 LSIQLDSFQKFIEQ------DPEGQYGLEAAFRSVFPIQS----------YSGNSELQYV 71 + Q+ SF FI + D ++ ++++ I + Sbjct: 23 IKQQIISFNDFIRKESQHIIDKIPNLVIQISYKNSNKIVNRILLLKQLYTEKPRIIKTRE 82 Query: 72 SYRLGEPVFD-------VQECQIRGVTYSAPLRVKL--RLVIYEREAPEGTVKDIKEQEV 122 Y L EP +D + ++R +TYS+ +R+++ + + V + ++ + Sbjct: 83 LYNLVEPSYDEGELNISPNKSRLRNITYSSKVRIQVFDEITDKHDANLKKKVVNKSKKFI 142 Query: 123 YMGEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPGVFFD 158 Y+G+ P M + G F+ING E+V+V+Q + Sbjct: 143 YIGKFPCMIKSDTCYLNNFSEISLARNDECPFDEGGYFIINGNEKVLVAQERLVKNKVYI 202 Query: 159 SDKGKTHSSG-----KVLYNARIIPYRGSWLDFEFDPKDN------LFVRI-DRRRKLPA 206 K + + ++ +L D +N + V+I R ++P Sbjct: 203 FSKIFDKKTRVMAQCRSYDSSLYNQGYMVYLKLVTDKSNNPNQCSEITVKIASLRAEIPL 262 Query: 207 TIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL---VPERLRGETASFDIEANGKVY 262 I+L+ L + ++I++ F+ + N L + + ++ + Sbjct: 263 VILLKFLGFKNDKEIINSIFKNNSNSKKLNMLYNSFLGVTKVQTISHALRYIVDRSFSKS 322 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 K ++K + + + K + A + +L+ + Sbjct: 323 NNKKLDPEKTAREIIDKKLLPHMGTSINSRFRKGLF---------ICYMAHRLINTLNEI 373 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 + + + + + + ++ ++ + ++ + E E Sbjct: 374 EQPDDKDSYKNKRVDISGHLFSSLFNNLIK----RSIKDVKNQLLKKVKKSDAT--ELEE 427 Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM---KKLIDIRNGK 439 N+ + RY L+ +L + S +L++ + ++ +L Sbjct: 428 LFSSNILTNGFRYSLA--TGNWIIDGMLDYKTGVSQVLNRMSYLSMISHLSRLNSSYTSN 485 Query: 440 GEVDDIDHLGNRRIRSV------------GEMAENQFRVGLV-------RVERAVKERLS 480 G++ DI RR+ + G+ + +++ + + L Sbjct: 486 GKILDI-----RRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVTNSHHIQKNIIQFLK 540 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 + + MI K + F S + + + + + RR + Sbjct: 541 KIMIKNSFTKPMIKTKKDKPDISIFVNGSWIGNTFEYFSLMKYLITLRR----------Q 590 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 E F+V V R+ P G I ++ N F K+ + Sbjct: 591 EIIPFDVSIVFNEKNKRIFIWSDP-----GRIKR-PLFVLKNSNSFFNHSIEKIAKKIKD 644 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHF-VEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 + + N ++ ++ E + + + + +++ ++ Sbjct: 645 NFHRWY--FYIKNSIVEYLDTEEIENIVIKLNYYNNTELIVDQTQIYKKMINFSEIHASS 702 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAV 690 ++ V AS +PF +H+ + R ++M +QA+ Sbjct: 703 ILGVSASQVPFSQHNQSPRNTYQSSMGKQAI 733 >UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTL9_ENTBH Length = 1066 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 98/476 (20%), Positives = 159/476 (33%), Gaps = 67/476 (14%) Query: 883 LVGKVTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFT 935 ++ P + +P ++ + G A ++K D+ L N + +I + Sbjct: 638 IIANTIPFADHNPSPRNIYQCQMAKQAMGIAAYNIKYRVDNKLYNINYLQHPLIQTSNYQ 697 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + + + + L + + + EK DK+ Sbjct: 698 CFEKFPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGMFNGFITMNEKIILEKNDKILYT 757 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 +E L + + E K R L V Sbjct: 758 PPIESKLKTNDIMLTYKSDGIIKTVRYENIEMGSVEKIRVFQNS--LTEKSNLTVIFTFR 815 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 + R GDK RHG KG+ + + DMP+ ENG DI++NP PSRM IG ++E+ Sbjct: 816 ILRNPVVGDKFCSRHGQKGICAFLWNEIDMPFTENGLKPDIIINPHAFPSRMTIGMLIES 875 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 G AA G +N + + Sbjct: 876 MCGKAAVKFGKFVNGDPFIDNKNNDI---------------------------------- 901 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + + LK G +Y G G + + + +G +Y +L Sbjct: 902 -------------NVNKFNVNRKLKECGFNYYGNEPMYSGVFGTELKTDIFIGLVYYQRL 948 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK R G+ + TQQP+ G+ GG RFGEME L A+G++ +++ L S Sbjct: 949 KHMVSDKFQVRVGGAITSTTQQPVKGRKNKGGIRFGEMEKDTLIAHGSSALIKDRLLDCS 1008 Query: 1296 DDVN-GRTKMYKNI----------VDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D KNI G MP F LL E+ + I +E + Sbjct: 1009 DKTTFKYCYKCKNILFSSPNDKCKCGGIKSKNIKMPYVFKYLLAELMGMNIKLEFD 1064 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 130/943 (13%), Positives = 284/943 (30%), Gaps = 143/943 (15%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP--- 78 ++ + ++ + F E++ ++ P+ + + + +P Sbjct: 1 MESKNIGNLHIQQFNALFEKNI-----IKNVVYKTKPLI--FKGFVMNFEKIEIHKPYVL 53 Query: 79 ------VFDVQECQIRGVTYSAPLRVKLRL-----VIYEREAPEGTVKDIKEQEVYMGEI 127 EC+ G TYS + VK++L +++ G + + + M + Sbjct: 54 KQDVDNRLLPHECRETGRTYSGNIFVKIKLMYKNEILFHDYRGAGQLPIMVKSN--MCHL 111 Query: 128 PLMTD-------------NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +MTD G F+ING +R+I + F K +S Y+ Sbjct: 112 SMMTDQELLAVKEDPNEHGGFFIINGYDRIIRFHIAHKRNWVF-GIYSKPKNSIFSGYSC 170 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 I S D E K+ + +D I L+ Y ++ + + Sbjct: 171 SI----RSVCDDEIGQKNEIVHTVD------GNIFLKCFFYHKGYLIPIIY--------- 211 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 + A ++ + ++ R +E + Sbjct: 212 -------------------ILRALQNTTDKEIYTLLNQNPRAIEFLTKSNQPYYNKDECL 252 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + + + A EL +L LS + L + I ++ + Sbjct: 253 NYLGSRFKHIFRIDNYKEAGEELLNRILIHLSSH-IDKFNLLIYSINKLFKLIDGKIKSE 311 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK-FNRSLLREE 413 + + + + P E+L + + + K ++ R+ Sbjct: 312 DIDLSSNHELYTEAQLIPLCIK---------EHLEEFKKLFKTRIIKLFKREVKNQYRDN 362 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 + I ++ D I + +I N E D ++ ++F + + Sbjct: 363 ETDTEITTQIDDIMSTNRSTNI-NDTVEFD--------------KLFSDEF------MIK 401 Query: 474 AVKERLSLGDLD--TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 + E DLD T + + + + + +S + + N +H +S Sbjct: 402 KIVELFKKTDLDIGTKIHKFLSTGNITTYNCSDLLQTSGFTFLSGRINYWEFASHFYSVS 461 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT--NEYGFLET 589 G VR + P +G CPI TP+G GL+ L+ + ++Y F Sbjct: 462 ---RGAFFSNLKITSVRKLQPESFGFFCPINTPDGSLCGLLTYLTQQCEITCSKYIFDTN 518 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 ++ + + + ++ + + + K E D+ Sbjct: 519 ILYQLGVSFINLNNNMIPVFY-NGKIMGYTSYPIKLIEDLRNYRCKNKLKIEIVYEFGDK 577 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 +D + +S +S+ + +++ +G Q L + T + + Sbjct: 578 IDEI-ISICDDISLLIRKVWNKKNN--MEEYIGIKEQVFLDIELGT---VHNTFNYKEID 631 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN--QNTCINQ 767 +++ + + + D + + + +M GI YN+ KY N N Q Sbjct: 632 INNM---FSIIANTIPFADHNPSPRNIYQCQMAKQAMGIAAYNI-KYRVDNKLYNINYLQ 687 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P + + LG N VA + + GY+ ED+I++++ V Sbjct: 688 HPLIQTSNYQC------------FEKFPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGM 735 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI--GAEVTGGDILVG 885 F + + + GI+ + G V Sbjct: 736 FNGFITMNEKIILEKNDKILYTPPIESKLKTNDIMLTYKSDGIIKTVRYENIEMGS--VE 793 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 K+ + + F + V +G G Sbjct: 794 KIRVFQNSLTEKSNLTVIFTFRILRNPVVGDKFCSRHGQKGIC 836 >UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB0F Length = 1114 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 102/432 (23%), Positives = 163/432 (37%), Gaps = 69/432 (15%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P GV+ V + +T +E + + L E L + R Sbjct: 739 PMGVNAVVAVIS-YTGYDMEDAMIINKSSFERGFGHGTILKSEFFHLNPDSYF-ERDPSK 796 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 A + D LP L + D +L++ E H E ++ G+ Sbjct: 797 AELISKLDDDGLPFPGTL-VEENDPICCYFNGELSKYVVEKFHGKEIAY-VDNVRLCCGE 854 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 L V + V R GDK A R G KG+ S++ P ED+P+ ++G D+V NP Sbjct: 855 TLNSA---SVCITFRVPRNPVVGDKFASRAGQKGICSQMWPCEDLPFTDSGLVPDVVFNP 911 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 G PSRM I ++E G +A G + D Sbjct: 912 HGFPSRMTIAMMIELMAGKSASVHG-------------------------------KVHD 940 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + F E D + +LL+ G ++Y G G + Sbjct: 941 ATPFIFSE-------------------DNSAIDYFGKLLEAAGYNYYGTEKMYSGVDGRE 981 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + G +Y +L H+V DK RSTG +TQQP+ G+ + GG RFGEME +L + Sbjct: 982 MNAAIFFGIVYYQRLRHMVLDKWQVRSTGPVDTLTQQPIKGRRRGGGVRFGEMERDSLIS 1041 Query: 1281 YGAAYTLQEMLTVKSDDVNGR------------TKMYKNIVDGNHQMEPGMPESFNVLLK 1328 +GA+ L + L SD R ++ + DG + +P F LL Sbjct: 1042 HGASALLHDRLFECSDKYKARSALFRCPKTGVKKEVCRLCSDGGNVKTIEIPYIFRYLLI 1101 Query: 1329 EIRSLGINIELE 1340 ++ ++ I++++ Sbjct: 1102 QLAAVNIHLKVY 1113 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 107/738 (14%), Positives = 228/738 (30%), Gaps = 111/738 (15%) Query: 214 NYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH 273 I F + I + L P L + D G ++ KG R Sbjct: 127 GVNQHPIEKDFGKIPIMIKSNRCHLKNLTPRELVEKNEHED--EWGGYFILKGHEKLIRM 184 Query: 274 IRQLEK----------DDVKLIEVPVEYIAGKVVAKD---------YIDESTGELICAAN 314 + + + + I + V++D ++ + T +++ + Sbjct: 185 LIATRRNYPIALSRRTWKQRGASFSEKGILLRCVSEDETSTNNVLHFVTDGTVKVMLSYG 244 Query: 315 MELSLDLLAKLSQSGHKRIETLF-------TNDLDHGPYISETLRVD----PTNDRLSAL 363 L L + +S + +D + +T+ D + A Sbjct: 245 RSLYFIPLCLILKSLINVSDLYVFKRLTEGRDDDFYFKSCIKTMLYDVHVQGIDTHEEAK 304 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 I + R P F DL + + Sbjct: 305 CFIGKTFRLKFPD--------QSPWFTDAQICDLIMEKCLAI--------HLNDNKDKFN 348 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----ERL 479 +I + +KL G+ ++ D L + I + G + + + L ++ ++L Sbjct: 349 LLIFMTQKLFAFVQGQCCEENADSLMVQEILTGGSIYQQVLKDRLQGFLNNLRLVASKKL 408 Query: 480 SLGDLDTLMPQDMIN----AKPISAAVKEFFGSSQ-------------LSQFMDQNNPLS 522 S G L+++ M + A I A+ F + L + N + Sbjct: 409 SEGKLNSISQIQMASFCKRAGGIEKAMNNFVATGNCHNSLSGLPQDKGLVIMAENINRMR 468 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++H A+ G + R + P +G +CP+ TP+G GL+N LS Sbjct: 469 YMSHF---KAIHRGAYFTTMRTTDGRQLLPEAWGFICPVHTPDGSPCGLLNHLSKDCIVT 525 Query: 583 EYGFLE---------TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 E T + +V + +Y + +G + A++N + V+ L Sbjct: 526 NVPDYEILKNLSCVLTDLGVMPLEIVEKKNNYYDVLLDGKLIGYVADTN---AQNLVQSL 582 Query: 634 VTCRSKG-------ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 + +G E L + + + P L L+G Q Sbjct: 583 RVLKIEGNVVPNTLEIVLVPKKDSESQYPGIFLFTGPNRLMRPVLNLALNKTELIGTFEQ 642 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 L+ ++ G + + S T ++ ++ D ++ + + +M Sbjct: 643 VYLEICLKLNEAYEGLTTHKEL---SHTTFLSNLACLIPMPDCNQSPRNMYQCQMGKQSM 699 Query: 747 GIDIYNL-TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 G ++ + + P G + L + +G N VA + Sbjct: 700 GTPVHTWDIQAETKLYRLLLPSSPLFRPGHY----------DAIKLDDFPMGVNAVVAVI 749 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 + GY+ ED++++++ + ++ + + + +SKL Sbjct: 750 SYTGYDMEDAMIINKSSFERGFGHGTILKS------EFFHLNPDSYFERDPSKAELISKL 803 Query: 866 DESGIVYIGAEVTGGDIL 883 D+ G+ + G V D + Sbjct: 804 DDDGLPFPGTLVEENDPI 821 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 61/396 (15%), Positives = 120/396 (30%), Gaps = 76/396 (19%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG--NSELQYVSYRLGEP--- 78 + L +DSF I++ GL +++ PI G +Q + RL P Sbjct: 37 LQTLGKPHVDSFNLLIDK------GLNLICKNLIPIHFSVGSDRYTVQIENLRLLYPVMP 90 Query: 79 ---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 EC+ R TYS L K+ + G+IP+ Sbjct: 91 DGSFALKTQKIFPCECRQRASTYSGNLFGKITWSVNGVNQHPIEK--------DFGKIPI 142 Query: 130 MTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 M + G F++ G E++I + + + +T Sbjct: 143 MIKSNRCHLKNLTPRELVEKNEHEDEWGGYFILKGHEKLIRMLIATRRN-YPIALSRRTW 201 Query: 166 SSGKVLYNARIIPYRG---------SWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNY 215 ++ + I R + L F D + + R +P +IL++L Sbjct: 202 KQRGASFSEKGILLRCVSEDETSTNNVLHFVTDGTVKVMLSYGRSLYFIPLCLILKSLIN 261 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 ++ F+++ D+ + L +D+ G E+ + + R Sbjct: 262 VSDL---YVFKRLTEGRDDDFYFKSCIKTML------YDVHVQGIDTHEEAKCFIGKTFR 312 Query: 276 QLEKDDVKLIEVPV--EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 D + I K +A D + + + Q + Sbjct: 313 LKFPDQSPWFTDAQICDLIMEKCLAIHLNDNKDKFNLLIFMTQKLFAFVQ--GQCCEENA 370 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 ++L ++ G I + + D L+ L + Sbjct: 371 DSLMVQEILTGGSIYQQVLKDRLQGFLNNLRLVASK 406 >UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax=cellular organisms RepID=Q1JNX7_STRPC Length = 249 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 124/258 (48%), Positives = 154/258 (59%), Gaps = 54/258 (20%) Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MPY +GTPVDI+LNPLGVPSRMNI G + L Sbjct: 1 MPYLPDGTPVDIMLNPLGVPSRMNI---------------GQVMELHLGMAARNL----- 40 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 G+ IATPVFDGA ++ + ++ + Sbjct: 41 ----------------------------------GIHIATPVFDGASSEDLWDTVREAGM 66 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 + + LYDGRTGE F+ V+VG MYM+KL+H+VDDK+HARS G YSLVTQQPLGGKAQ Sbjct: 67 DSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQ 126 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 FGGQRFGEMEVWALEAYGA+ LQE+LT KSDDV GR K Y+ I G +PG+PESF Sbjct: 127 FGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFR 186 Query: 1325 VLLKEIRSLGINIELEDE 1342 VL+KE++SLG+++ + DE Sbjct: 187 VLVKELQSLGLDMRVLDE 204 >UniRef50_A7SSE2 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7SSE2_NEMVE Length = 913 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 107/789 (13%), Positives = 233/789 (29%), Gaps = 96/789 (12%) Query: 197 RIDRRRKLPATIILRALNY---TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +ID + T ++ A+ + L K + + + E Sbjct: 77 KIDNVPQGSVTKVIAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIR 136 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 + + Y R + + + + + + Y+++ + A Sbjct: 137 MLILPRRNYPLAIIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAY 196 Query: 314 NMELSLD----LLAKLSQSGHKRIETLFTNDLDHGPY-------ISETLRVDPTNDRLSA 362 EL +L L + I ++ + + T + + ++ S Sbjct: 197 RKELYYVPVVFILKALMNVTDQHIYRELIKAEENNTFWKDCVAMMLRTAQEEGAVNQKSV 256 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L I R D + AV + + + + Sbjct: 257 LEYIGLRFR---------------VKMRLPDWFSDEAVAQYLIQQCICIH--LDTNADKF 299 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + +I + +KL + K + D N+ + G + ++ Sbjct: 300 NLLILMTRKLYALALEKCCAESADSPMNQEVLLGGHLYLMVLKMEYF------------- 346 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 + IS + S + D+ N ++H R + G + Sbjct: 347 ---------LATGNLISKSGLALQQISGFTVVADRLNYFRFLSHFR---CIHRGAFFSQM 394 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 VR + P +G +CP+ TP+G GL+N L+ Q L ++ + Sbjct: 395 RTTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAAGCQVVNVVPLVAHMLRLLCTMGMIP 454 Query: 603 IHY-LSAIEEGNYVIAQANSNL-----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV- 655 + + + Y + L D L + GE + ++ + + Sbjct: 455 VDAPVPGDYKNYYPVVMDGRVLGSVDRDLAPTLANRLRIMKVLGEERVPQFLEICLVPIT 514 Query: 656 ------STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL---VGTGMER 706 + S A ++ + + N+ M + ++ + + L V T ME Sbjct: 515 KVASQYPGLFIFSSPARMMRPVLNLAVNKIEMIGSFEQVYMDIAIVQEELHEGVTTHMEL 574 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 ++ + Y D ++ + + +M G ++ R++ Sbjct: 575 K-----PTAMLSAIASMTPYSDFNQSPRNMYQCQMGKQTMGTPVHAFQ--HRTDNKLYRI 627 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P L P + D E LG N VA + + GY+ ED++++++ + Sbjct: 628 QTPQSPLVRPASHDFYIMD-------EYPLGTNAIVAVISYTGYDMEDAMVLNKASYERG 680 Query: 827 RFTTIHIQELACVSR---DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + + + +LD G +GA ++ GD Sbjct: 681 FAHGSIYKAQFVNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGFPPLGAHLSTGDPY 740 Query: 884 VGKV-TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV-----IDVQVFTRD 937 + T GE + L I ++ + D +G G ++ F+ Sbjct: 741 YSYIDTNTGEAVVKKYSNLEAGIIDDRNPIIGDK-FSSRHGQKGICSQKWPVENMPFSES 799 Query: 938 GVEKDKRAL 946 G+ D Sbjct: 800 GMTPDIIFN 808 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 95/286 (33%), Gaps = 20/286 (6%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 P G + V + +T +E + + + LE + + Sbjct: 648 YPLGTNAIVAVIS-YTGYDMEDAMVLNKASYERGFAHGSIYKAQFVNLE----PKSQDRT 702 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + ++ L PR G D + L D + K Sbjct: 703 SSSNLQFGTLPDDPRID----GRLDADGFPPLGAHLSTGDPYYSYIDTNTGEAVVKKYSN 758 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 + + R GDK + RHG KG+ S+ P+E+MP+ E+G DI+ N Sbjct: 759 LEAG----------IIDDRNPIIGDKFSSRHGQKGICSQKWPVENMPFSESGMTPDIIFN 808 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ G +A G +A E ++ + + + Sbjct: 809 PHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFTFSEDDSAIDYFGKLLVKWVEGINGL 868 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP 1205 L ++ + + TPV+ E +L P Sbjct: 869 VLEVQGFRGWFNQSQGFKSYLRY-TPVYLPLTEPHPYDLAITTLYP 913 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 50/347 (14%), Positives = 96/347 (27%), Gaps = 87/347 (25%) Query: 6 TEKKRIRKDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + K K++G+ + L+ ++SF +E+ Sbjct: 14 SLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLAA---------------- 57 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +C+ +G TY + L+V L+ I T Sbjct: 58 --------------------QCREKGSTYCSKLQVTLQWKIDNVPQGSVTK--------V 89 Query: 124 MGEIPLMTDN------------------------GTFVINGTERVIVSQL--HRSPGVFF 157 + IPLM + G F++NG E++I + R+ + Sbjct: 90 IAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAI 149 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSW----LDFEFDPKDNLFVRIDRRR---KLPATIIL 210 K S Y ++ +G + + N+ + I R+ +P IL Sbjct: 150 IRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFIL 209 Query: 211 RA-LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 +A +N T + I + +N + V LR + + + Sbjct: 210 KALMNVTDQHIYRELIKAE----ENNTFWKDCVAMMLRTAQEEGAVNQKSVLEY---IGL 262 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 R +L + D + LI Sbjct: 263 RFRVKMRLPDWFSDEAVAQYLIQQCICIHLDTNADKFNLLILMTRKL 309 >UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0ERH0_ENTDI Length = 1106 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 83/441 (18%), Positives = 149/441 (33%), Gaps = 70/441 (15%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 P G + V + D + E + + ++ + G + + + + Sbjct: 714 YPTGANAIVAVISYTGYDMEDALIIKKSAIERGFGHGSQYKAYKVDFEKEGEKNEMFSGI 773 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + G ++ + + ++++ + + G Sbjct: 774 TSSGEIFDEHLDDDGLPRPGEIFENSPIYSHIDKITGKI--KGKVLMGERGYIESVRIVG 831 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D L+ V + R GDK + RHG KG +S +DMP+ E+G DI++N Sbjct: 832 GDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGTLSLHYQEKDMPFTESGMTPDIIIN 891 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P H + I + +M A +GA + Sbjct: 892 P---------------HAFPSRMTIAMLVESM----------------ASKVGALKGEYQ 920 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + F +E + + L G LY G G Sbjct: 921 DATPFKFDE-------------------ENTAVDYFGKQLLKYGYNYYGSEPLYSGIYGN 961 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +G +Y +L H V DK RSTG S+VT QP+ G+ + GG RFGEME +L Sbjct: 962 ELQSDIYIGVVYYQRLVHQVKDKYQVRSTGPISIVTHQPIKGRKRGGGIRFGEMERDSLV 1021 Query: 1280 AYGAAYTLQEMLTVKSD----DVNGRTKMYKNIVDGNH--------------QMEPGMPE 1321 A+G + + + L SD V + I + +P Sbjct: 1022 AHGTSMLVHDRLFECSDKCYHYVCTKCGSICTIKRSKEYDKMICQSCGPTSIVKKIQIPY 1081 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 F L E+ ++ + + L+ + Sbjct: 1082 VFRYLAAELSAMNVRLNLKVD 1102 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 117/848 (13%), Positives = 255/848 (30%), Gaps = 88/848 (10%) Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS-WLDFEFDPKDNLFVRIDRRRKLPA 206 G+ + + + + + Y G L + ++P Sbjct: 51 MELSCTGISIEKPRYNGLPLFPYMCRSAALTYSGKIRLTITIKENETSKTIEVDGGEIPI 110 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + +E I + ++ + P + G IE ++ V Sbjct: 111 MVGTSKCWIGSEYITP-----------EERINIREDPHEIGGYFIINGIERYLRMIVYAK 159 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 IR + I +D + N +++L + K Sbjct: 160 ANHPLAVIRPSWTNKGAHFTKYGIIIRCMR--EDITTLTNTLHFLD-NGKVTLRFIFKKQ 216 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDP-TNDRLSALVEIYRMMRPGEPP----TREAA 381 + + L I E + ++ N L E+ G P T E Sbjct: 217 EFFIPVVLLLRVYGGMSDREIFELITMNNYENSNLVNAAEMLVRRENGSPLNGLNTPEQV 276 Query: 382 ESLFENLFFSED--RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 S + F ++ + K S D +I +++KL + +G+ Sbjct: 277 LSYIGSKFRLIMDSTEGVNDIELGKRVLEEFCLVHLSSYSEKSDLLIFMLQKLFALVHGE 336 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE-----------RAVKERLSLGDLDTLM 488 + + +D ++ + G + + + + + + VK+ + + L Sbjct: 337 IDEEGVDTPMSQGVLLPGHLYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQ 396 Query: 489 PQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALG 534 AK +K F + S ++ N +H ++ Sbjct: 397 RILSNVAKSFGTRIKSFISTGNFETSSTTDLQQTNGFSITAERLNHSRFTSHF---VSVH 453 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 G +R + P +G +CP+ TP+G GL+N +V + N P +K+ Sbjct: 454 RGAFYTTMKTTSIRKLVPEAWGFMCPVHTPDGAPCGLLNHFAVSCRINARKHP-LPEQKI 512 Query: 595 TD-----GVVTDEIHYLSAIEEGNYVIAQANSNLD--EEGHFVEDLVTCRSKGESSLFSR 647 D G+V+ + L +I + + + E FV+ L R+ + + Sbjct: 513 IDLCTELGMVSTQFMKLPSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAIYNPKIPNT 572 Query: 648 DQVDYMD------VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 ++ Y D + ++ +I + H + ++ + D Sbjct: 573 LEIGYCDGYLQDGYHALYLNNLPGQMIRPVIHRATGNIVNIGPYEQVFLDIKCGDSIEGM 632 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 E S + +++ + + ++ + + +M G I L+ RS+ Sbjct: 633 NNAEYE--EISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMG--IPALSNKYRSDT 688 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTD---LGELALGQNMRVAFMPWNGYNFEDSILV 818 P + + E G N VA + + GY+ ED++++ Sbjct: 689 KLLWLHYPQ----------RSICQCALMEPFGFNEYPTGANAIVAVISYTGYDMEDALII 738 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 + ++ + E + I + GE LD+ G+ G Sbjct: 739 KKSAIERGFGHGSQYKAYKVDFEKEGEKNEMFS-GITSSGEIFDEHLDDDGLPRPGEIFE 797 Query: 879 GG------DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 D + GK+ K + +R + G+ ++ VI + Sbjct: 798 NSPIYSHIDKITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQKAVVRVRYNRTPVIGDK 857 Query: 933 VFTRDGVE 940 +R G + Sbjct: 858 FSSRHGQK 865 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 56/426 (13%), Positives = 132/426 (30%), Gaps = 67/426 (15%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD- 81 ++ L +SF F+E+ E L+ + + + EL + +P ++ Sbjct: 10 ELKELTRAHTESFNYFLEKGKEDI--LKYMKKYKIIKKDSTELMELSCTGISIEKPRYNG 67 Query: 82 ----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD----- 132 C+ +TYS +R+ + + E EV GEIP+M Sbjct: 68 LPLFPYMCRSAALTYSGKIRLTITIKENETSKTI---------EVDGGEIPIMVGTSKCW 118 Query: 133 ---------------------NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 G F+ING ER + + + + + ++ Sbjct: 119 IGSEYITPEERINIREDPHEIGGYFIINGIER-YLRMIVYAKANHPLAVIRPSWTNKGAH 177 Query: 172 YNARIIPYRGSWLDFEF----------DPKDNLFVRIDRRRKLPATIILRAL-NYTTEQI 220 + I R D F+ + +P ++LR + +I Sbjct: 178 FTKYGIIIRCMREDITTLTNTLHFLDNGKVTLRFIFKKQEFFIPVVLLLRVYGGMSDREI 237 Query: 221 LDLFFEKVIFEIRDNKLQMELVPERLRGET--ASFDIEANGKVYVEKGRRITARHIRQLE 278 +L +N + +R E + +V G + Sbjct: 238 FELI----TMNNYENSNLVNAAEMLVRRENGSPLNGLNTPEQVLSYIGSKFRLIMDSTEG 293 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +D++L + +E ++ +L+ +L + ++ + G + Sbjct: 294 VNDIELGKRVLEEFCLVHLSSY---SEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGV 350 Query: 339 NDLDHGPYISETLRVDPTNDRLS-ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 H + +T+ + + LS A + I + ++ + ++ + + + + Sbjct: 351 LLPGH---LYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQRILSNVAKSFG 407 Query: 398 SAVGRM 403 + + Sbjct: 408 TRIKSF 413 >UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus RepID=A4RSZ5_OSTLU Length = 1145 Score = 274 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 101/492 (20%), Positives = 163/492 (33%), Gaps = 91/492 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS----GTVIDVQVFTRDGVEKDK 943 TP + KL R + + + GT V V G + + Sbjct: 708 TPMHTICYRSDTKLYR--LHTPQRPLALTCTYDKYSLDDYALGTNAVVAVIAYTGYDMED 765 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK--LDKLPRDRWLELG 1001 I + + L G+ + +E LD + + Sbjct: 766 A--MIVNKGSLHRGFAHATLYKTLVEGISANETLSRRDNTYTSENKQLDGTGSVQLGSIV 823 Query: 1002 LTDEEKQNQLEQLAEQYDELKH--EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + N + + K A K + L R Sbjct: 824 RPGDTLLNLHSSDGVTKGRSIRLRGTDAAVVDKVVLTQSVKQAATKNDKRAAITLRYDRN 883 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 GDK + RHG KGV+S + P EDMP+ + G D+++NP PSRM IG ++E+ Sbjct: 884 PVIGDKFSSRHGQKGVLSFLWPEEDMPFSDRTGLRPDVIINPHAFPSRMTIGMLVESLAA 943 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 A GA D + F + Sbjct: 944 KA-------------------------------GASTGIFADATPFKHSDK--------- 963 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 + + E +LL+ G RL +G TGE F + +G +Y +L H+ Sbjct: 964 ---------EISPTEEYGKLLRESGYNFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHM 1014 Query: 1239 VD--DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 V H RSTG + +T QP+ G+ GG RFGEME +L A+G AY L +L + SD Sbjct: 1015 VSLFHTFHVRSTGPNNPLTMQPIKGRKSGGGIRFGEMERDSLLAHGVAY-LVSLLHICSD 1073 Query: 1297 D--------------------------VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 + + R + + +P F L E+ Sbjct: 1074 NRDAWVCNMCGSLIAPLTCVASIRTDEYSSRRTSCRVCDSAHKLERISIPHVFIYLTAEL 1133 Query: 1331 RSLGINIELEDE 1342 ++ I+++++ + Sbjct: 1134 AAMNISVQVKAK 1145 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 111/731 (15%), Positives = 221/731 (30%), Gaps = 110/731 (15%) Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 ++ E+ + L +G D + ++ AL + + Sbjct: 262 VCSDAEMYRQVCLHLRSAGTDETFI-----EDRLALLQRECHELQIRTQMCALSYLGQHF 316 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 R + + ++ F + Y +I ++ Sbjct: 317 RTLLDLSSDESDISVGERFLEDFIY-----------------VHLQHNGDKLSLLILMLS 359 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE----NQFRVGLVRVERAVKERLSLGDLDT 486 KL+ I G+ DD D L N+ + G + + + R+ +V ++ + G Sbjct: 360 KLLSIVTGRCSPDDPDSLVNQEVLVPGLLLQAMIREKVRIAFQKVVTHLRR--TQGSWSE 417 Query: 487 LMPQDMIN---AKPISAAVKEFFGSSQL--------SQ------FMDQNNPLSEITHKRR 529 +IN + + V+ F + L SQ ++ N I+H R Sbjct: 418 ETISHLINESGSSDVGKVVEYFLATGNLVSPTGLGLSQTSGFTIVAEKLNYFRYISHFR- 476 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 ++ G E VR + P +G +CP+ TP+G GL+N L+ + +T Sbjct: 477 --SVHRGAYFMELRTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAEMCEIVM---PDT 531 Query: 590 PYRKVTDGVVTDEIHYLSA-IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 + ++ A I Y A+ + EG FV ++ + R Sbjct: 532 DHVFQQKRLLQIHSVLDRALISVEQYDCGYAHVPVVLEGSFVG-YISAENASHVISALRA 590 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK---PLVGT--- 702 + S ++ + + P EH + R P + + +GT Sbjct: 591 FKVTLTTSVLRMSEISY-IHPGGEHGLFPGLYIFYGPSRLMRPVKQVESMKVEFIGTLEQ 649 Query: 703 --------GMERAVAVDSGVTAV-----AKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 +E A + + + + D ++ + + +M G Sbjct: 650 AFLSISAHQVESHNASYTHAEIRNTSALSCVASLTPWSDFNQSPRNMYQCQMAKQTMGTP 709 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 ++ + RS+ P L D + ALG N VA + + G Sbjct: 710 MHTICY--RSDTKLYRLHTPQRPLALTCTYDKYSLD-------DYALGTNAVVAVIAYTG 760 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 Y+ ED+++V++ + + L +S + L + T N +LD + Sbjct: 761 YDMEDAMIVNKGSLHRGFAHATLYKTLVEGISANETLSRRDNTYTSEN------KQLDGT 814 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 G V +G+ V GD L+ K S+R+ + V Sbjct: 815 GSVQLGSIVRPGDTLLN--------------------LHSSDGVTKGRSIRLRGTDAAVV 854 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 V + K + ++ G + + + Sbjct: 855 DKVVLTQSVKQAATKNDKRAAITLRYDRNPVIGDKFS-SRHGQKGVLSFLWPEEDMPFSD 913 Query: 989 LDKLPRDRWLE 999 L D + Sbjct: 914 RTGLRPDVIIN 924 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 100/332 (30%), Gaps = 67/332 (20%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS----GNSELQYVS 72 P + + L + +DSF G + R V P + L Sbjct: 29 SVPSEVPIKKLFACHVDSFNHL------TNLGFDQILRCVKPEKFQQSAGCPELMLWLED 82 Query: 73 YRLGEPVF------------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +L F + C+ G +Y APL V+ I ++++ + Sbjct: 83 LKLESLKFRHRISGRTESQKTPRGCREGGESYKAPLSVQFCWQI--------DGENVQRR 134 Query: 121 EVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVF 156 V +G+ P+M + G F+ING ER ++ + + Sbjct: 135 VVNLGDCPVMVKSDVCSLALLSPAQLVARGEEAHEAGGYFIINGIER-MIRMIIQQRRHH 193 Query: 157 FDSDKGKTHSSGKVLYN--ARIIP-----YRGSWLDFEFDPKDNL---FVRIDRRRKLPA 206 + + L++ A +I S + + L + +PA Sbjct: 194 ILGLCRRAFTKRSPLFSEFATVIRCVTEDEHSSIVRLHYMRTGALRLALQHRRQEFFIPA 253 Query: 207 TIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 I+LRAL + ++ + D +E L+ E I Sbjct: 254 GIVLRALAVCSDAEMYRQVCLHLRSAGTDETF-IEDRLALLQRECHELQIRTQMCALSYL 312 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 G+ ++ D+ + E +E + Sbjct: 313 GQHFRTLLDLSSDESDISVGERFLEDFIYVHL 344 >UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Isoetes sp. JL-2005 RepID=Q1L6W4_9TRAC Length = 623 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 83/419 (19%), Positives = 140/419 (33%), Gaps = 80/419 (19%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 V+ + ++ ++ M + L+ F V G + Sbjct: 262 VLSDTGYNQEDSIILNQSSLDRGMFRSMHFHTHKDALKPTLDQRFGEPSESDVGGYKKQS 321 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQL-------AEQYDELKHEFEKKLEAKRRKITQGD 1040 +KL D +G + +L E K + ++ + I + Sbjct: 322 HYEKLDSDGLPHVGAALSSSDVIIGKLFTAGADVREVDASQKLKHTERGRVDQVVIAAKN 381 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D VKV L R Q GDK + HG KGV+ ED+P+ +G D+++NP Sbjct: 382 DAETD----VKVRLRECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPDLIINP 437 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 P+R +G + + + V+ + Sbjct: 438 HAFPTRQT---------------LGQLMECLAGKAAAVSAREQ----------------- 465 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 F E L +G +Y GR G + Sbjct: 466 ----------------------DATPFVERSLPRFSEELHKAGFQRTGMECMYSGRVGTR 503 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + V +G + +L H+ +DKM R TGS +T+QP+ + + GG RFGEME + A Sbjct: 504 MKVRVNIGVTFYQRLTHMAEDKMKYRRTGSVHPLTRQPIVDRKRHGGIRFGEMERDCMIA 563 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKM---------------YKNIVDGNHQMEPGMPESFN 1324 +GA+ TLQE L + SD + G++ + +P + N Sbjct: 564 HGASATLQERLFLLSDPYVMYICTKCRRTASVEQNKVPRCRFCKCGSNIVRVNVPYACN 622 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 84/466 (18%), Positives = 152/466 (32%), Gaps = 61/466 (13%) Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 TP+G N GL+ S++V+A LETP + + D ++ + + G V N Sbjct: 1 STPDGENCGLVKSMAVFAIVT----LETPEQPILDALLGHMMPPEAVFPLGELVKVFLNG 56 Query: 622 NL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 D E + + R G + + + S L+ L D + Sbjct: 57 KWVGITDAENDLEQYVKRKRRGGGLDYQAIC----LRGKEINIFSDAGRLLRPLFIVDND 112 Query: 678 RALMGANMQRQAVPTLRADKPL---VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 + + + V G+ V + A G +Q + R Sbjct: 113 ELCI-TKEHLFELRRKKPQDGFEYLVKEGVIEFVGAEEEY--RASIAGSIQDLKRPRSHH 169 Query: 735 -KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ----MPCVSLGEPVERGDVLADGPS- 788 + E+ P + + NQ++ + Q ++G V D S Sbjct: 170 VRYTHMELRPASLLAIGAFVIPFVNHNQSSRVMQQSRKHCRQAIGFNCSNLRVRCDTTSH 229 Query: 789 -----------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 EL GQN VA + GYN EDSI++++ + F ++ Sbjct: 230 ELLYPQRPLVRTQAMTLIGRPELHNGQNPIVAVLSDTGYNQEDSIILNQSSLDRGMFRSM 289 Query: 832 HIQELACVSR---DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 H + D + G + ++ KLD G+ ++GA ++ D+++GK+ Sbjct: 290 HFHTHKDALKPTLDQRFGEPSESDVGGYKKQSHYEKLDSDGLPHVGAALSSSDVIIGKLF 349 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 G +V D+S ++ + G V V + ++ E D + Sbjct: 350 TA----------------GADVREV-DASQKLKHTERGRVDQVVIAAKNDAETDVKVRLR 392 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 E + K S Q G+ + L P Sbjct: 393 ECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPDLIINPH 438 >UniRef50_Q0CKF7 DNA-directed RNA polymerase I polypeptide 2 n=3 Tax=Trichocomaceae RepID=Q0CKF7_ASPTN Length = 1205 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 122/1011 (12%), Positives = 300/1011 (29%), Gaps = 159/1011 (15%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDV 82 + + +DSF + L+ ++ GEP Sbjct: 35 SLADAIKPHVDSFNALFDGSKVLDAALKDIGTKT-------------FID---GEPE-TP 77 Query: 83 QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 ++ + R R P+ +++ +EV++ + P + + F Sbjct: 78 EQKKAR--------------QAEGRRPPKRNRLNVRIREVFL-DRPAIPPSNKFTT---- 118 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR-IDRR 201 R+ ++ + + + L E+ + +V + Sbjct: 119 --------RNRNIYPSECRERHATYRGKL-----------RARLEYQVNNGDWVESVREL 159 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEAN 258 ++P + + +L K E + E + L +F + Sbjct: 160 GQVPIMLRTNRCHLEKATPEELVQHKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAII 219 Query: 259 GKVYVEKGRRITARHIR------QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 +V++G T I+ L + + + + +I Sbjct: 220 RGSFVKRGHTYTKYGIQIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMILK 279 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 A +E + + + T D + T + + R S + +P Sbjct: 280 ALVETNDREIFEGLVGNASSEGINNTFVTDRVELLLRTYKGYNVHTRSSCRAYLGEKFKP 339 Query: 373 --GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 G P ++ E L + L +G + E I+ +++ Sbjct: 340 VLGVPSDMSNEDAGTEFL----RKVVLPHLG--------NQNVTETQDYDKFKMIMFMIR 387 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVRVERAVKERLSLGDLDT 486 KL + G D+ D + N+ I G + + + + +++ + + Sbjct: 388 KLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFGPILRDWSNRNNGAK 447 Query: 487 LM--------PQDMINAKP--ISAAVKEFFGSSQLSQ--------------FMDQNNPLS 522 ++ + +A++ F + L ++ N Sbjct: 448 FTDPAFERDFLSKIVKRSNENLGSALEYFLSTGNLVSPTGLDLQQASGYTVMAEKINFYR 507 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 I+H R I G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 508 FISHFRMI---HRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAHKCLIS 564 Query: 583 EYGFLET--PYRKVTDGVVTDEIHYLS---AIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 + P V GV ++ L ++ ++ + + + L + Sbjct: 565 TSDIDVSHLPKLLVQLGVRSESSVSLDESVPVQIDGRIVGYCSPK--QARVVADTLRYWK 622 Query: 638 SKGESSLFSRDQVDYMDVS------TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 ++ ++ Y+ S + S A + +++ ++ ++ + Sbjct: 623 VMEMHNVPKELEIGYVPNSNGGQYPGIYIFSQAARMFRPVKYLLLDKLDYVGPFEQPFLE 682 Query: 692 TLRADKPL---VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 + L V T +E + ++ + + D ++ + + +M G Sbjct: 683 IACLPEDLIPGVSTHIEF-----TPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGT 737 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 + R++ Q + P L + D G N VA + + Sbjct: 738 PGTAIDY--RTDNKLYRLQTGQTPIVRP-----PLYNAYGLDN--FPNGTNAVVAIISYT 788 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI---------PNVGE 859 GY+ +D++++++ + + D +I + Sbjct: 789 GYDMDDAMIINKSSHERGFGHGTIYKTKIHSLDDKDSRRGRSRREITKLFGFAPGGEIKA 848 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 + LDE G+ +IGA V G + V + + G ++ Sbjct: 849 EWRNSLDEDGLPHIGARVREGSL----VAAWHTVRYDAATDSYVNVDGITHF------IK 898 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 + G + ++V + + +++ ++ ++ + + G Sbjct: 899 YKDAEEGYIDSIRVMGAETGVEPCQSISVKYRVPRKPVIGDKFSSRHGQKG 949 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 76/396 (19%), Positives = 128/396 (32%), Gaps = 99/396 (25%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ I + ++ S + +++ G ++AE Sbjct: 792 MDDAMIINKSSHERGFGHGTIYKTKIHSLDDKDSRRGRSRRE--ITKLFGFAPGGEIKAE 849 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF-------------EKKLEAKRR 1034 + L D +G E +YD + + + Sbjct: 850 WRNSLDEDGLPHIGARVREGSLVAAWHTVRYDAATDSYVNVDGITHFIKYKDAEEGYIDS 909 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 G + + + V V R+ GDK + RHG KG Sbjct: 910 IRVMGAETGVEPCQSISVKYRVPRKPVIGDKFSSRHGQKG-------------------- 949 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 M I Q++E+ G A G Sbjct: 950 ------------MTIAQMIESMAGKAGALHGHP--------------------------- 970 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 D + F E + E L+ G LY Sbjct: 971 ----QDSTPFQFSE-------------------ENTATDYFGEQLRKAGYNYYGNEPLYS 1007 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G TG++F + +G ++ +L H+V+DK R+TG + +T QP+ G+A+ GG R GEME Sbjct: 1008 GITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNSLTGQPVKGRAKGGGIRVGEME 1067 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 +L A+GAA+ LQ+ L SD R + ++ Sbjct: 1068 RDSLIAHGAAFILQDRLMNCSD--TQRAWICRDCGS 1101 >UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=C5YHJ3_SORBI Length = 1251 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 145/1054 (13%), Positives = 291/1054 (27%), Gaps = 209/1054 (19%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGN--------SE 67 L+S Q++S+ +F+ GL+ F S+ I Y + + Sbjct: 116 RSFFSATGLVSHQINSYNQFVSH------GLQDLFDSLGEITVEPDYDPSNKSGAWKHAT 169 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 +++ L EPVF V L L + + + Sbjct: 170 IKFGRVELSEPVFMVD---------------NLDLEQQDLKFKPRH-----------ARL 203 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 MT + T +V + DK +GK + R + Sbjct: 204 QRMTYASRMNVEMTAQVYI------------LDKSDKAKTGKDTHVHR--------REIM 243 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 + K LP + Q D F+ + + ++ + E+ Sbjct: 244 TETKQVSM------GLLPVMVKSNLCWLHKLQESDCQFDFGGYFLIKGTEKVFIAEEQRF 297 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 + L ++ E I K+V + Sbjct: 298 LSRIWITDYPSWDASY--------------------LSQIKREKINIKLVPSKRNESCKV 337 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS------ 361 I + + ++ + + LD I + Sbjct: 338 ITIYFMGTIIPIWVVFFALGVSSDKEAFDMIDILDCDASIVNIISSTIKESHEEFEGFRA 397 Query: 362 ---ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 A + +++R + P +E+ + F S Sbjct: 398 PGRACQYVDKLIRKSKFPPKESFDEYVCRYMFPSVNGVRS-------------------- 437 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 + ++K L+ +G + D+ D N+R+ ++ + + R E + + Sbjct: 438 --KALFLGYMVKCLLMAYSGNRKCDNKDDFRNKRLGLACQLLRRELWTHIKRAEWRMVKL 495 Query: 479 LSLGDLDTLMPQDM---INAKPISAAVKEFFGSSQLSQ------------FMDQNNPLSE 523 + + QD+ ++A I+ + F + + + NPL Sbjct: 496 MQRDLSNDGNLQDLRRYVDASIITNGLNRAFSTGSWRHPYLKARCSGVVATLRRTNPLQM 555 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++ R+ + A + R +P+ +G++C + TP+G G + +L+V A Sbjct: 556 MSDLRK----TRQWVAYSGAVGDARYPNPSFWGKLCFLSTPDGEKCGFVKNLAVTAV--V 609 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 + P ++ +S + N +L +L S Sbjct: 610 SSVVRKPLIDTFVSCGMKKLDDISLQDISGKDRIFLNGSLLGVCADPHELTLRLRSLRRS 669 Query: 644 LFSRDQVDYMDVS---TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 QV+ +V+ ++ L + R + + L + Sbjct: 670 KLIDPQVEIKRDKHHKEVRVLCDPGRILRPLLVVENLRRITRPKDGLYSFQELIDQNIVE 729 Query: 701 GTGMERAVAVDSGVTAVAKRGG-------------------------VVQYVDASRIVIK 735 G+E + G ++ + + Sbjct: 730 LIGVEEEEDIQCASGIRHLFSGEKEDRSSGYTHCELDPSFLLGLSCSLIPFANHDNGKRV 789 Query: 736 VNEDEMYPGEAGIDIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVLADGP----- 787 + + E I +TR + Q P V G A+ Sbjct: 790 LMQAEKISQ-QAIGYSPTNSHTRLDTLSHQIFYPQRPLFKT--VVSYGLGKAETAYSFGR 846 Query: 788 --STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 + E GQN V+ G+N EDS++++ ++ F T+H++ + ++ Sbjct: 847 KDDFNTPEYFNGQNAIVSINVHQGFNQEDSLVLNRASLERGMFRTLHLKSYKAQVENKEI 906 Query: 846 G-----PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 E I + LD G+ Y+GA + GDI++GKV+ GE Sbjct: 907 TRRLKHRESINFGKVQSKRGKVDSLDSEGLPYVGASLQSGDIVIGKVSESGE-------- 958 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 D S ++ + G V V + D + K Sbjct: 959 --------------DHSAKLMHTEKGMVDKVVLSANDDGVNFATVTLRQSRSPCVGDKFA 1004 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 S Q GL + P Sbjct: 1005 SMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPH 1038 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 93/437 (21%), Positives = 153/437 (35%), Gaps = 86/437 (19%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE--AEKLDK 991 F ++ RA M K +++ E + R + G V+ K+D Sbjct: 871 FNQEDSLVLNRASLERGMFRTLHLKSYKAQVENKEITRRLKHRESINFGKVQSKRGKVDS 930 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L + +G + + + +++E + K +K + ++ DD + Sbjct: 931 LDSEGLPYVGASLQSGDIVIGKVSESGEDHSAKLMHTEKGMVDKVVLSANDD----GVNF 986 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V L R GDK A HG KGV+ ++ E+ P+ G DIV+NP G P+R Sbjct: 987 ATVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTP 1046 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+LE LG G A V + E + +A Sbjct: 1047 GQLLEAALGKGIAMGGKVRYATPFTTPTVDVITEQLHKAGFSRWGE-------------- 1092 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 V +G +K L V +G Sbjct: 1093 --------------ESVLNGQTGERMKSL--------------------------VFMGP 1112 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L H+ +DK+ R+TG VT+QP+ K +FGG +FGEME + A+GAA L E Sbjct: 1113 TFYQRLVHMAEDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAAANLHE 1172 Query: 1290 MLTVKSD----DVNGRTK--------------------MYKNIVDGNHQMEPGMPESFNV 1325 L SD + + + +P + Sbjct: 1173 RLFTLSDFSQMHICQACQRVANVIMRPAEGGSKKVHGPYCMFCRSAERIVRVNVPYGSKL 1232 Query: 1326 LLKEIRSLGINIELEDE 1342 L +E+ +GI ++ + E Sbjct: 1233 LYQELFCMGICLKFDTE 1249 >UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=A0BY74_PARTE Length = 1115 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 86/447 (19%), Positives = 147/447 (32%), Gaps = 99/447 (22%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG---LFSRIRAVLVAGGV 984 + D + + E+ I + D + ++L L+++I++ + + Sbjct: 729 MEDAMILCKSSYERGFGHGIIYKSSEYSLNDDKEVKYKLLSQIPVQLYNQIKSQIPVNLL 788 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ L + Q Q ++ D E+ + + Sbjct: 789 PYGLPEQSQVVTKGTAVLALYDSQLQQVKVHHSKDSETARIEQVAVVNKSENDVS----- 843 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 V + + R GDK + RHG KGV+S + P DMP+ E+G DI++NP Sbjct: 844 -----VMIKYRINRNPIIGDKFSSRHGQKGVMSLLWPQIDMPFSESGMVPDIIINP---- 894 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 H + IG I +M Sbjct: 895 -----------HAFPSRMTIGMLIESM--------------------------------- 910 Query: 1165 SDEEVMRLAENLRKGMPIATPVF----DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 N+ +G T F + + L G LY G G Sbjct: 911 ------AAKANVLQGEMFETHPFQNYENDNVVDYFGKQLIKHGYNYHGNETLYSGIYGTP 964 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + + G +Y +L H+V DK ARS G ++TQQP+ G+ + GG R GEME AL A Sbjct: 965 LKVDIYFGVVYYQRLRHMVSDKSQARSMGPVDVLTQQPIKGRKKGGGIRLGEMERDALIA 1024 Query: 1281 YGAAYTLQEMLTVKSD----DVNGRTKM------------------------YKNIVDGN 1312 +G AY + + L SD + + Y Sbjct: 1025 HGVAYCINDRLLKCSDYSETYICDKCGNMLATYQFVQLLSLENIQSVQSSHPYCVRCKQA 1084 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 + +P L+ E+ ++ + +E Sbjct: 1085 KCSKVAIPFVLRYLVNELAAMNVKLEF 1111 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 103/743 (13%), Positives = 231/743 (31%), Gaps = 90/743 (12%) Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 E D VR+ +P + + + +L ++ + + + Sbjct: 101 EIDDNPKETVRLSLGE-IPILVKSQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKII 159 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 R I+ K + ++ + + Y+ + Sbjct: 160 RM----LIIQKRNYPIAFKRPGYKNKGFN--FSPYAVQMKCVRSDQYARTITLHYLMDGN 213 Query: 307 GEL-ICAANMELSLDLLAKLSQSGHKRIETLF----------TNDLDHGPYISETLRVDP 355 L I EL + ++ L ++ ++ D + + Sbjct: 214 VYLRIILKKKELQMPVIILLRALTDMNDYQIYQQIVRSQADKSDISDRVEVMIADAKSRG 273 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 N + AL I R++R E F+ + DL VGR+ + Sbjct: 274 INTQKDALEYIGRLLR-------------VELNIFNPETTDL-QVGRIFLREHICVH--L 317 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + ++ ++KL + + D++D L N+ + G + R L + V Sbjct: 318 DNDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVLLSGHLYTAYLREKLEDLLVGV 377 Query: 476 KER-LSLGDLDTLMPQDMINAK-------PISAAVKEFFGSSQL-SQ------------- 513 +E+ L + +D+ K + ++ F + L SQ Sbjct: 378 REKILKDATKEQSKLKDLAYFKRCFDLQTTVGEKLENFLATGNLRSQTGLDLMEASGFTI 437 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 D+ N + ++H R ++ G + VR + P +G VCP+ TP+G GL+N Sbjct: 438 IADKLNNMRFLSHFR---SVHRGSYFAQMKTTTVRKLLPDVWGFVCPVHTPDGGPCGLLN 494 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE-----GNYVIAQANSNLDEEGH 628 +++ + E ++ + + + + +I NS+L Sbjct: 495 HITMSCVPLTHP-DEQDIEELLFPLGVQSQRLIYSKNDLPVVLNGKLIGYLNSSLLP--T 551 Query: 629 FVEDLVTCRSKGESSLFS-----RDQVDYMDVST-QQVVSVGASLIPFLEHDDANRALMG 682 F + +S G + Q + + + + A L+ + + N Sbjct: 552 FEHTIRVYKSNGTIKETTEVACLPRQENKSPLFPGIYINTTVARLMRPVINLKLNTIEWI 611 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 + +++ + + + + ++ V +++ ++ + + +M Sbjct: 612 SPLEQINMSIACTQADIRTDTQYQEIDP---AYILSILASNVPFLNYNQSPRNMYQCQMA 668 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 G +N R + P + D + A G N V Sbjct: 669 KQTMGSPCHNYPY--RFDNKMYRILFPQKPVVRCFGYDDY-------QFADYASGTNAIV 719 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A + + GY+ ED++++ + + I + D K ++ + IP + Sbjct: 720 AVISYTGYDMEDAMILCKSSYERGFGHGIIYKSSEYSLNDDKEVKYKLLSQIPVQLYNQI 779 Query: 863 S-----KLDESGIVYIGAEVTGG 880 L G+ VT G Sbjct: 780 KSQIPVNLLPYGLPEQSQVVTKG 802 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 56/394 (14%), Positives = 127/394 (32%), Gaps = 80/394 (20%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS----------YSGNSELQYVSYRLGEP 78 ++SF +GL R + PI+ N ++ ++G P Sbjct: 14 KHHIESFNYL------YTHGLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMP 67 Query: 79 ---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 +C+ +Y+AP+ + I + + +GEIP+ Sbjct: 68 TQQGMLGDNRVLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLS--------LGEIPI 119 Query: 130 MTDN------------------------GTFVINGTERVIVSQL--HRSPGVFFDSDKGK 163 + + G F+ING E++I + R+ + F K Sbjct: 120 LVKSQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYK 179 Query: 164 THSSGKVLYNARIIPYRGSW----LDFEFDPKDNLFVRIDRRRK---LPATIILRALNYT 216 Y ++ R + + N+++RI ++K +P I+LRAL Sbjct: 180 NKGFNFSPYAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDM 239 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR- 275 + +++++ D + V E D ++ G + R +R Sbjct: 240 NDY---QIYQQIVRSQADKSDISDRV------EVMIADAKSRGINTQKDALEYIGRLLRV 290 Query: 276 --QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + + ++V ++ + D+ ++ +L + +++ + Sbjct: 291 ELNIFNPETTDLQVGRIFLREHICVHLDNDQDKASILLLCIEKLYALFIDEINPDNLDSL 350 Query: 334 --ETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 + + + + Y+ E L R L + Sbjct: 351 VNQEVLLSGHLYTAYLREKLEDLLVGVREKILKD 384 >UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella erythropus RepID=Q1L6V8_9TRAC Length = 593 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 72/363 (19%), Positives = 128/363 (35%), Gaps = 74/363 (20%) Query: 996 RWLELGLTDEEKQNQLEQ--LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 +G + + L + ++ + +A ++ + V V Sbjct: 286 GLPYIGAKMTAGDVVIGRMALTKPXNKFVDKMSNLEQAWVDQVVC-SMGEEQDQRHVNVR 344 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R Q GDK + HG KGV+ + ED+ + + G D+++NP PSR Sbjct: 345 LRESRCPQVGDKFSSMHGQKGVVGMMLSQEDLLFTQQGIVPDVIINPHAFPSRQT----- 399 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 + + +++ + + Sbjct: 400 ----------LAQMLESLVGKTAAM----------------------------------- 414 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 G+ + F + ++ + L GQ R+Y G TG T G + Sbjct: 415 -----GLCLGDTPFTHLRAEQLAQKLAKRGFQKWGQDRVYSGCTGRMTGAMATFGLTFYQ 469 Query: 1234 KLNHLVDDKMHARS-TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +LNHL DKM R G +T QP+ + + GG +FGEME L A+GA+ T+QE L Sbjct: 470 RLNHLSRDKMKCRGGNGPVHPLTHQPVKDRRRQGGTKFGEMERDCLVAHGASATVQERLF 529 Query: 1293 VKSD----DVNGRTKM-----------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 + SD V + MP + +L E++++G+++ Sbjct: 530 LVSDKSLVHVCANCCRLASFNSQQQPGCLFCKRXQRPVAVEMPYACKLLRMELQAMGVDM 589 Query: 1338 ELE 1340 Z Sbjct: 590 RFZ 592 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 91/262 (34%), Gaps = 50/262 (19%) Query: 658 QQVVSVGASLIPFLEHDDANRALMGA----NMQRQAVP---------------TLRADKP 698 ++++ G L+ L D R L+ ++ R P ++ Sbjct: 63 IRILTDGGRLLRPLLVVDEQRVLVFMGKHIHLLRAMAPRERFNYMLKSGLVELLGAQEES 122 Query: 699 LVGTGMERAVAVDSGVTAV----------AKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 GM R A S V+ ++D + ++ + + G+ I Sbjct: 123 NAVVGMTRLEAESSRTAFTHLEMHPASFLGLSASVIPFLDHNHSSRVTHQAQKH-GKQAI 181 Query: 749 DIYNLTKYTR--SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 +Y +R + Q P V LA + L G N VA Sbjct: 182 GVYACDNLSRMEPTAHLYYPQKPLVH--------SWLAQHLTCPX--LTNGTNCVVAVAS 231 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + G+N EDS++V++ V F + H D+K + ++ Sbjct: 232 YGGFNQEDSLIVNQASVDRGLFRSTHFFVKKASL-DSKSSQHFGKSSDSASLDSD----- 285 Query: 867 ESGIVYIGAEVTGGDILVGKVT 888 G+ YIGA++T GD+++G++ Sbjct: 286 --GLPYIGAKMTAGDVVIGRMA 305 >UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F81 Length = 309 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 137/308 (44%), Positives = 204/308 (66%), Gaps = 9/308 (2%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQK---FIEQDPEGQYGLEAAFRSVF 57 M S+TEKK IRK FGK + L +P L+ +Q +S+++ F + E G + F+S+F Sbjct: 1 MQLSFTEKKNIRKSFGKLKESLSIPNLIEVQKNSYKELTEFNTEVTELTKGFDRVFKSIF 60 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTVK 115 PI+ + + L+YVSYRL +P FDV+EC RG+TYS+ L+ LRLV+YE +E + Sbjct: 61 PIEDLNDKATLEYVSYRLEKPKFDVEECIARGLTYSSALKCTLRLVVYEIDQENNTKDIL 120 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 KEQEVYMGE+P+MT++GTF+ NG +RV+V+Q+HRSPGVFFD DKGKTH+SGK+L+N R Sbjct: 121 SAKEQEVYMGEVPMMTNSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKTHASGKLLFNCR 180 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV--IFEIR 233 +IP RGSWLDFE+D KD L+ +IDR++K+ ++ +L AL YT +I+D F+E F+ + Sbjct: 181 VIPNRGSWLDFEYDVKDFLYFKIDRKKKIFSSTLLLALGYTKSEIVDEFYESEQYNFDPK 240 Query: 234 DNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 K + + PE + + S ++ G+V ++ G +I ++L D +K I V E Sbjct: 241 TEKWKTKFNPENYKAKNFSEEVIDAKTGEVVIKLGDKINFLSAKKLANDGLKDILVSRES 300 Query: 292 IAGKVVAK 299 + GK + Sbjct: 301 LFGKFCTE 308 >UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative n=1 Tax=Schistosoma mansoni RepID=C4Q6P1_SCHMA Length = 1155 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 119/757 (15%), Positives = 235/757 (31%), Gaps = 117/757 (15%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEANGK 260 LP ++ RA N ++ + F+ + E V L ++ + + Sbjct: 100 LPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRS 159 Query: 261 VYVEKGRRITAR--HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + ++G T +R + +D+ I + + G+ ++ + + + +S Sbjct: 160 TFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRVS 219 Query: 319 LDLLAK-LSQSGHKRIETLFTN-DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 L K I LF + + I L+ D + + AL + Sbjct: 220 FKSLYKTFGNVRTCNISFLFLKFHIRNAMRILIRLKDDEYSSQTRALCYLGG-------- 271 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 LF DR G+ + + S + + ++KKL Sbjct: 272 -------LFRKRMNVPDRLSDEEAGKFLLSEYIAIH--LSSFLDKYHLLCFMIKKLHAFV 322 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI--- 493 +G + D+ + + + R ++ + VKE++ L + + Sbjct: 323 SGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQVLLKSRKQNVRISLSLFH 382 Query: 494 -----NAKPISAAVKEFFGSSQL-------------------SQFMDQNNPLSEITHKRR 529 A +S A+ + L S D N L R Sbjct: 383 QALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFR- 441 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 A+ G E VR + P +G CP+ TP+G GL+N L+ ET Sbjct: 442 --AVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLA----EPVEAVCET 495 Query: 590 PYRKVTDGVVT-DEIHYLSAIEEGNYVIA----QANSNLDEEGHFVEDL----------V 634 P + V + + H L IE + Q + +G + L + Sbjct: 496 PKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRLAL 555 Query: 635 TCR------------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR---- 678 R E +L V + + G+ L+ +++ + Sbjct: 556 ELRNSKVDPNCKNIPHTMEITLVPSTDVG-SQYPGLYLFAGGSRLLRPVKNLQCPKNSAG 614 Query: 679 ----ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 +G Q +++ ++ + ++R+ + + G++ Y D ++ Sbjct: 615 KDVIEWIGTFEQVYLNISVKEEELSERSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPR 674 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN---QMPCVSLGEPVERGDVLADGPSTDL 791 + + +M G Y RS+ Q P V V+ D+ Sbjct: 675 NMYQCQMAKQTMGHSCYTWR--NRSDAKAYRLFTPQSPLVRTKMYVKY----------DV 722 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV--------SRDT 843 LG N VA M + GY+ ED++++++ + S + Sbjct: 723 DHYPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNN 782 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + + GE LD G +GA + G Sbjct: 783 PFQKKRLVTSEYYFGEKPDKGLDLDGFPPVGARLEPG 819 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 146/473 (30%), Gaps = 110/473 (23%) Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 S + VI+ + R E+ ++ + Q Sbjct: 737 SYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNPFQK----KRLVTS 792 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + L D + +G E + L + E K E + Sbjct: 793 EYYFGEKPDKG----LDLDGFPPVGARLEPGVSWLYAY--THSETLQTNFIKYEGGEQIA 846 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY-DENGTPVD 1095 G + L + R+ GDK + RHG KG+ S + E+MP+ NG D Sbjct: 847 YVDSISLNGSWSCATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPD 906 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 ++ NP G P+RM +G ++E G +A G+ I+A Q E + Sbjct: 907 LIFNPHGFPTRMTMGMMIEFLAGKSAALTGNLIDATPFQWSEDSPPY------------- 953 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 + ++L G + G Sbjct: 954 -------------------------------------EDYCQILTDCGFNHWGTETMMSG 976 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TG Q E + VG +Y +L H+V DK R+ G + + +QP+ G+ GG R GEME Sbjct: 977 STGRQLEAQIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMER 1036 Query: 1276 WALEAYGAAYTLQEMLTVKSDD-------------------------------------- 1297 L ++G ++LQ+ L + D Sbjct: 1037 DCLLSHGLVFSLQDRLVDSNCDKVKMLACSKCGGLTHSDLARNITNTSVNQITSNNSSSF 1096 Query: 1298 VNGRTKMYKNIVDGN-----------HQMEPGMPESFNVLLKEIRSLGINIEL 1339 V G + + D + + SF L E+ L + L Sbjct: 1097 VPGTNRWCCRLCDSDSSDCVSRDRDNSLKYVKVSASFRYLTYELACLNVKTRL 1149 >UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=Eukaryota RepID=Q2I5U5_BATDE Length = 1202 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 125/723 (17%), Positives = 225/723 (31%), Gaps = 140/723 (19%) Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CP ETPEG GL+ +LS+ G P + + + + +S Sbjct: 609 CPAETPEGQACGLVKNLSLMGYITV-GSPAPPILEFLEEWTMESLEEISPSTIPTATKIF 667 Query: 619 ANSNLDEEGHFVEDLVT-CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 N + LV+ R S S + DV Sbjct: 668 LNGQWVGIHRDPDQLVSTLRRLRRSVDVSPEVSVVRDV-------------------RDR 708 Query: 678 RALMGANMQRQAVPT--LRADKPLVGTG-MERAVAVDSGVTAVAKRGGVVQYVDASR--- 731 + + R A + ++ LV T M + + D GVV+Y+D Sbjct: 709 ELRLCTDAGRIARSLFVVTPEQSLVLTKEMVQQLHEDQIQWKDLLSYGVVEYIDTEEEET 768 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 ++I + D++ + R T + V PS L Sbjct: 769 VMICMTPDDLAEARMAAAGQVV---ERHQVGTGRLKSATVYTRNYTHC----EIHPSMIL 821 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF----TTIHIQELACVSRDTKLGP 847 G + + +P+ +N S R V + + + R + Sbjct: 822 G-------ICASIIPFPDHNQ------SPRSVYQSAMGKQAMGLFLTNF--QLRMDTMSN 866 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 P A+ L + AI Sbjct: 867 ILFYPQKPLATTRAMEF-------------------------MHFRDLPAGINAVVAIAC 901 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 + +D SL + + ++ R ++++K+ I L++ +D + L Sbjct: 902 YSGYNQED-SLIMNQSSIDRGLFRSLYYRVYMDQEKKVGMISTETLEKPSRDTTLR---L 957 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 + G + ++ + + + + + + E + ++ + + Sbjct: 958 KHGTYEKLEDDGLIAPGVRVSGEDIIIGKTVPIAADSTELGQRTTMHTKRDASTPLKSTE 1017 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + IT D K VKV + R GDK A RHG KG + EDMP+ Sbjct: 1018 NGIVDQVLITTNQD----GFKFVKVRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMPF 1073 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 +G D+++NP +PSRM IG ++E L + GD+ +A V + + +Q Sbjct: 1074 TADGITPDLIINPHAIPSRMTIGHLVECLLSKVSTFTGDEGDATPFTDVTVEAISQALQG 1133 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + N G + V+ Sbjct: 1134 YG---------------YQRRGFEVLYNGHTGRKLNAQVYT------------------- 1159 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G Y +L H+VDDK+H+R+ G ++T+QP+ G+++ GG Sbjct: 1160 --------------------GPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGG 1199 Query: 1268 QRF 1270 RF Sbjct: 1200 LRF 1202 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 24/154 (15%) Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + FR+ ++ + V L + + + I+ K Sbjct: 1 KKRLDLAGPLLGGLFRMLFRKLTKDVSRYLQITMESGREFNLSLAVKSSTITNGPKYSLA 60 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR++ + R+ + R +H TH Sbjct: 61 TGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNT----PIGRDGKLAKPRQLHNTH 116 Query: 555 YGRVCPIETPE-----GPNIGLINSLSVYAQTNE 583 +G VC E G ++ L+ L A + Sbjct: 117 WGMVCLSGDTEVVLGNGMDVVLLTDLVDGACVST 150 >UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=Pseudomonas mendocina RepID=Q5ZH39_PSEME Length = 382 Score = 262 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 172/230 (74%), Positives = 197/230 (85%) Query: 622 NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 +EG +++LV R E ++ + + V MDVS +QVVSV ASLIPFLEHDDANRALM Sbjct: 152 PERQEGQLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALM 211 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 G+NMQRQAVPTLRADKPLVGTGMER VA DSGV VA+RGGV+ VDASRIV++VN+DE+ Sbjct: 212 GSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVNDDEV 271 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 GEAG+DIYNLTKYTRSNQNTCINQ P VS G+ V RGD++ADGPSTD+GELALGQNMR Sbjct: 272 ETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDQVSRGDIMADGPSTDMGELALGQNMR 331 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 VAFMPWNG+NFEDSI +SERVVQEDRFTTIHIQEL CV+RDTKLGPEEI+ Sbjct: 332 VAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEIS 381 >UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunaliella salina RepID=D0FY17_DUNSA Length = 916 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 125/260 (48%), Positives = 176/260 (67%), Gaps = 2/260 (0%) Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ++ L L +IN K ++A++EFFG+S LSQFMDQ NPL+E+THKRR+S++GPG Sbjct: 655 KKDISQQLKGLTSSSIINNKAFNSAIREFFGTSPLSQFMDQINPLAELTHKRRLSSMGPG 714 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 G+TR+ A +R +HPTHYGR+CPIETPEG N GL+NS++ YA+ N G LE+P+ KV Sbjct: 715 GVTRDTATLAIRGIHPTHYGRICPIETPEGKNTGLVNSMTTYARVNSSGILESPFYKVYK 774 Query: 597 GVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G V ++YL+A +E +A A+ + G + ++ R + SR V Y+ Sbjct: 775 GQVQKNTGMYYLNAEQEEKIKLAAADLYVSPIGFLPKAMIPARIAETFTKISRSSVQYIG 834 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS Q++S+ ASLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E DSG Sbjct: 835 VSPLQMISIAASLIPFLEHDDANRALMGSNMQRQAVPLIRHERPIVGTGLEGRAVSDSGH 894 Query: 715 TAVAKRGGVVQYVDASRIVI 734 ++ G+V YV A +I++ Sbjct: 895 VIQSRYSGLVTYVSAKKIIV 914 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 148/380 (38%), Gaps = 43/380 (11%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 + +++Q SF + +E+ GL F PI + + + Y L P + Sbjct: 8 LSDFVTVQRQSFFELLEK------GLIEEFAKRNPITNGRKDYSFFFYPEYYILTRPEYK 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 E ++ +Y++ L V +++ + K I + VY+G IPLMT G F++NG Sbjct: 62 PHEAILKNKSYTSKLFVPVQITNKKH-------KQIVLKWVYIGNIPLMTKRGHFILNGA 114 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGK-----------------------VLYNARIIP 178 RVIV+Q+ RSPG+++ + + K + +I Sbjct: 115 ARVIVNQILRSPGIYYQQKIYENYEDNKGSKSNAQDDETGEGSSLQPVNTYKRFYCDLIC 174 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE--KVIFEIRDNK 236 RGSWL E D + N++ ++ + K+P L A+ + + IL + KV+ + NK Sbjct: 175 MRGSWLRIEMDKEKNIWAQMKKGPKIPIYWFLLAMGLSEKVILKSIMDPQKVLGNLERNK 234 Query: 237 LQMELVPERLR-GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +L + + TA ++A+ + + + L D K Sbjct: 235 AVPKLSKKNKKDLTTARSAMQADETLKSTGEDKKNLEIKQDLIVADSLNESNSQTDKTTK 294 Query: 296 VVA-KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + ++ + + G L + + L++ + F+N +I E Sbjct: 295 LFWPEETREGTKGALTGFPHDLKNEGEENSLNKINEVNFVSEFSNKSVKNDFIEEDNEKA 354 Query: 355 -PTNDRLSALVEIYRMMRPG 373 TN S+ + Y ++ Sbjct: 355 IKTNASTSSKKQNYPYLKNT 374 >UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious spleen and kidney necrosis virus RepID=Q5YF54_ISKNV Length = 1053 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 114/308 (37%), Gaps = 67/308 (21%) Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 K VK+ L R + GDK A KG + DMP+ +G D+V+NP Sbjct: 803 ADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCGMMYDQWDMPFTADGVVPDLVINPHAF 862 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM + +L+ + A G Sbjct: 863 PSRMTVHYLLQMCFELGAVAGG-------------------------------------- 884 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 G F+ +K L+ + +Y GRTG +FE Sbjct: 885 ---------------GKGYDATAFNSDGTDLLKT-LEELGYA---KQVMYCGRTGRRFES 925 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V + KL HLV +K+HAR+TG +T+QP+ G+++ GG + GEME W ++GA Sbjct: 926 LVFMAPCPYQKLKHLVANKVHARTTGPVDPLTRQPVAGRSRDGGIKIGEMEQWCKISHGA 985 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNI----------VDGNHQMEPGMPESFNVLLKEIRSL 1333 A L E +T SD ++ MP + + +++ S+ Sbjct: 986 AAALHESMTTMSDPYTVPVCSVCHVMTDSYKVCRHCRSVSVQSYAMPYTSKLFFQQLASI 1045 Query: 1334 GINIELED 1341 GI + D Sbjct: 1046 GIKTCIMD 1053 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 113/624 (18%), Positives = 195/624 (31%), Gaps = 108/624 (17%) Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL- 481 + ++ L++ G V D D+L +R+ + G + FR + VK + Sbjct: 293 QHLGYMVATLLNAHV-VGAVHDKDNLRWKRVDTSGALILFLFRNLFKQWVCTVKRVMEKS 351 Query: 482 -----GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------------SQFMDQN 518 DL I+ + F + SQ M Sbjct: 352 CVVGVPDLQGKSGSVNAITNVITNVLHLAFATGNWLVRKNSGTSKNTYTPRGVSQLMCVQ 411 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 N + I++ RR++ + + +VR +H +H G +CP ETPEG +G + L++ Sbjct: 412 NYGARISNLRRMTH----AVGFKGKNIKVRQLHNSHNGYICPYETPEGDRVGNVVQLALS 467 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV---EDLVT 635 A V IH L + Q N + G V D + Sbjct: 468 ATVTVP-------------VCPRNIHTLMMSALRLFADPQGNQPVLLNGEIVAWVRDRML 514 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ------RQA 689 C L+ V + + H RA + ++ R Sbjct: 515 CGMAMMHVLWDYPHVTVVFRHG------------YGVHCVQRRAAVSCDLSLHRGQYRMV 562 Query: 690 VPTLRADKPL--VGTGMERAVAVDSGVTAVAKRGGVV----------QYVDASRIVIKVN 737 P+L + + ER V++DS G+V + + ++ Sbjct: 563 CPSLVQGLLVRPFPSPTERVVSMDSMRAEFMDLPGIVVLTDAMSAVIPFYNHTQSPRNAY 622 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 + M G+ + + L +R + + P V P+ R + + + G Sbjct: 623 QSNM--GKQAVGLPCLNYMSRWDVTLDVLMYPQV----PLSRSKAM---DALSFDTMPHG 673 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP-- 855 VA + ++GYN EDSI+++ VQ F + + L + K E +P Sbjct: 674 ACPIVAVLTFDGYNQEDSIILNRSSVQRGMFVSTTYKTLCECEKHVKRCEFERIMCVPVD 733 Query: 856 -NVGEAALSKLDESGIVYI----GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 L + GI G VT G ++VGK++ F + Sbjct: 734 KRRPGLVYDYLGDDGIFDPALARGMFVTAGVVVVGKMS-----------------FDQSR 776 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 + SL V G D VF K + + + K S Q G Sbjct: 777 PEGVCCSLAVKPHEEGYFDDKLVFNMADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCG 836 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPR 994 + + L P Sbjct: 837 MMYDQWDMPFTADGVVPDLVINPH 860 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 33/215 (15%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV-FDVQEC 85 L+ + ++ ++ P+ N + + +P Sbjct: 22 LVHHHIAHYEHLLKVHIP------QVVEGEPPVI--IHNHSVTFGDVAYSKPSPETPGHA 73 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY-MGEIPLMT------------- 131 + TY + K L Q ++ + ++P+M Sbjct: 74 RAYDETYETTVSCKAYLT-------CLATGAKHVQHIHNLAKMPVMVRAQPLCQGIGECE 126 Query: 132 --DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 G F++ G ER+I+ +H + + + + + Sbjct: 127 KDPGGFFIVKGKERIIIPHIHTAYNIPITMHCTTKKTLVCEMRTHNETTGNNLLVKVRLM 186 Query: 190 PKDNLFVRIDR-RRKLPATIILRALNYTTEQILDL 223 + + + + LPA + AL + E +L Sbjct: 187 QGCIIEMSVPYIKSFLPAGAVFNALGVSEEDMLRY 221 >UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella terrestris RepID=B2X254_9CHLO Length = 808 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 126/272 (46%), Positives = 176/272 (64%), Gaps = 4/272 (1%) Query: 467 GLVRVERAVKE--RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 G + ++ +E + L D INA+ ++ A++EFFG+S LSQF+DQ NPL+EI Sbjct: 496 GFDKEKKNFREAPEFLITRKKNLRISDFINARYVNGALREFFGTSPLSQFLDQINPLAEI 555 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR + LGPGG++ + A VR +HPTHYGR+CP+ETPEG N GL+N+L+ YA+ N Sbjct: 556 THKRRFTLLGPGGVSEDTATMAVRGIHPTHYGRICPVETPEGKNAGLVNTLTGYARVNSD 615 Query: 585 GFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 G +ETP+ KV + + +LS +E V+A + ++ + G + + RS GE Sbjct: 616 GLIETPFLKVFKSQIQKKKGFFFLSPEQEEKSVLATGDLSISKTGFLPKGFLPARSLGEF 675 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 + S V +M VS Q++SV SL+PFLEHDDANRALMGANMQRQAVP R+++P+VGT Sbjct: 676 TKVSSKSVGFMSVSPIQLISVATSLVPFLEHDDANRALMGANMQRQAVPLARSEQPIVGT 735 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 G E DSG AK GG V Y A+++V+ Sbjct: 736 GTEAKAISDSGAAVRAKFGGFVCYASANKVVV 767 >UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVW5_9CHLO Length = 1310 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 130/518 (25%), Positives = 224/518 (43%), Gaps = 38/518 (7%) Query: 96 LRVKLRLVIYEREAPEGTVK-DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 + K+RL+ + K + ++ Y E L+ +I + + S Sbjct: 1 MYKKIRLIYIKNGNLLNLWKHFLFSKKKYSTEYFLLNCRIKKIIEPAIKYKSNNWKLSYV 60 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 ++ K S V + + + K + D R + + Sbjct: 61 LYILYFFQKKESKKFVNFFSES--------RLDNLKKSSQRAECDENRLMS--------S 104 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 QI F + + + L L + F I +V V + R + Sbjct: 105 LRNHQIFFSFLLIHNKKKKIRFQWVFLGNLPLMTKRGHFIINGAPRVIVNQIIRAAGVYY 164 Query: 275 RQLEKDDVK------LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 +Q +K V+ I+ + V + + ++ + + L Sbjct: 165 QQQVNKVIKKGQKQIYRTFYVDIISYRGVWLRFELDKKRQIWVCMKKTPKMPIFVFLKFM 224 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENL 388 G + L + T T + L L + +++ + + Sbjct: 225 GFSKKNILSNVRNIQPNFFKNT--KMHTRNFLFYLTQNFQLEKTFNH-------TFTYRK 275 Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 F + YDL +GR + N L IL+ D + + +L+D+ N + VDDID+L Sbjct: 276 FLNPQIYDLGIMGRKRLNSKLGL--RTKKTILTPSDFLKITYRLLDLTNHQDVVDDIDNL 333 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 GNRRIR+VGE+ + QF R+ + ++E++ + + +P+++ ++EFFGS Sbjct: 334 GNRRIRTVGELLKIQFFQATFRLNKILEEKIKKTESMD----SIFTTRPMNSVLREFFGS 389 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 QLSQF+DQ NPLSE+THKRRIS LGP G+ RE AG ++R +H T++GR+CPIETPEG N Sbjct: 390 CQLSQFLDQTNPLSELTHKRRISCLGPNGIQRETAGMDIRGIHSTYFGRICPIETPEGQN 449 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 GL+NSL++++ N GFLE+ + K+ G + ++ L Sbjct: 450 AGLVNSLTIFSTKNADGFLESIFYKIYKGQIQKQLEPL 487 >UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 6 RepID=RPB2_IIV6 Length = 1193 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 79/449 (17%), Positives = 168/449 (37%), Gaps = 73/449 (16%) Query: 921 PNGVSGTVIDVQVF---TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 PNG++ V D + +K +++ + K + EE +I A Sbjct: 789 PNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIVEERKIGVNEKICMPVA 848 Query: 978 VL--VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL-----E 1030 + + E + P +++ + + ++ + + E Sbjct: 849 SVRRMNNYSLLEDNPESPYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQETDHSTIVSI 908 Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 ++ K+ + + + + K+ +A ++R + GDK KG + I DMP+ E+ Sbjct: 909 SEEGKVDRIIRTSKKGILMFKIVIAQQKRPEIGDKFCSAMAQKGTVGMILEEVDMPFMED 968 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD 1150 G+ D+++NP +PSRM I QI+ + +G + Sbjct: 969 GSIPDMIINPHCLPSRMTINQIMASIMGKTCCAKNETFG--------------------- 1007 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 D S F + + + + + + + L+ +G Sbjct: 1008 ---------DASPFQESSLEKPQDKIHA----------------LCKELEECGYNYNGTE 1042 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG--SYSLVTQQPLGGKAQFGGQ 1268 + G G++ + G +Y +L H+V DK+ +R++ +T+QPL G+A GG Sbjct: 1043 TMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGL 1102 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDD---------------VNGRTKMYKNIVDGNH 1313 R GEME + +G + L E + +SD V + + + +G Sbjct: 1103 RIGEMEKDCMLVHGISKFLHEKMFDQSDKFIINLCVPCKSYFKVVKTQNGFFCSGCNGID 1162 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ P + + +E+ ++G +E + + Sbjct: 1163 IVKFNCPFAAKLFFQELTAMGQKLEFKVK 1191 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 132/989 (13%), Positives = 297/989 (30%), Gaps = 145/989 (14%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 L+ QL++F FI D + + + + Sbjct: 29 LKDYFQTSGLVKHQLETFDHFIFHDIKTII---------------DDEASIIFNG----- 68 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 R + S+ ++ Y R+ E +K + V++ + P +T++ T V Sbjct: 69 ---------KRSL--SSQIKNGAVEEGYNRKESEKI--MLKFENVFVAK-PTITNDDTTV 114 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 ++ + K + ++ + + E +L V+ Sbjct: 115 ---------------RPLYPAEARQKMITYDSFVFVD--VLEYVLRDEEEILVNKHLRVQ 157 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 I K+P + N + E + L G+ + + Sbjct: 158 IA---KIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERVLIGQLRNAYNRS 214 Query: 258 N--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + E + + + + I+ K K T +LI + Sbjct: 215 ICFRNKFSEPLTCDMRSMSEETGHSVLIQLRLNDSPISQKRNLKKLDKNGTIDLIISQTK 274 Query: 316 ELSLD--LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + L + +++ L ++ + Y+ + + + Sbjct: 275 TPIPISFVFRVLKVATIDKLKFLIGDEEELDKYLIKIVEETSDGGIFDDMEIEISQEDDF 334 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 E+ E F +D + V +++L ++ +L + I+ K Sbjct: 335 NEENEESTEKKKITQFIEQDMFPHLGVSSTHEEKAILLGKMVRKLLLVNETSINANKFAQ 394 Query: 434 DIRNGKGEV----------DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + +D D+ N+R+ + G + FR+ R ++ +L + Sbjct: 395 RANDETNKTNKTNKMYYTQEDRDNYSNKRVETAGVLCFELFRMLYKRFIKSNINQLEKRN 454 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFM-DQNNPLSEITHKRRI 530 + + I+ + F + +Q ++ + + ++ RR Sbjct: 455 RVEMDV--ISKNAFITTGLHFSFSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRRF 512 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 + +E ++R +HP+ CP ETPEG +G+ + S+ A+ + Sbjct: 513 VI----PMGKEGKNTKIRQIHPSSIFFACPSETPEGQFVGITLNFSMLAEVSIRTSSVVI 568 Query: 591 YRKVTDG-VVTDEIHYLSAIEEGNYV----IAQANSNL----DEEGHFVEDLVTCRSKGE 641 + +H +S E ++ I N + + + D+ + K Sbjct: 569 KEIIEASHQAFKHVHEISLEENKQFLSKLSIIFVNGGICGLTSKPQQLLSDVRDLKLKHC 628 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA---NRALMGANMQ----------RQ 688 V ++ + S I + + + N +M + Q + Sbjct: 629 LKY-DVSAVFIPELKEVHISSDAGRFIRPVLNLQSIKTNGNVMWNSFQNCLENGHVVYKD 687 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVA-----KRGGVVQYVDASRIVIKVNEDEMYP 743 A ++ + + R V + A + + + ++ + M Sbjct: 688 AYEIEQSQIAINLQDLSRYPTVYDSMEIHASCMLGVMAAQIPFAEHTQSPRLCYQSSMAK 747 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 G + K + + Q P V+ + G N VA Sbjct: 748 QAIGNIPSHHVKSDNTTRVMDYVQRPLVTTQ----------IAEMNRFNDFPNGLNAMVA 797 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 + G+N EDSI++++ + F + + + R + + S Sbjct: 798 VAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIVEERKIGVNEKICMPVASVRRMNNYS 857 Query: 864 KLDES------GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 L+++ G+V + + V D+LVGKV K T +E D S Sbjct: 858 LLEDNPESPYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQET--------------DHS 903 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 V G V + ++ G+ K + Sbjct: 904 TIVSISEEGKVDRIIRTSKKGILMFKIVI 932 >UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT n=1 Tax=Hydra magnipapillata RepID=UPI0001924CDE Length = 1117 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 81/458 (17%), Positives = 150/458 (32%), Gaps = 87/458 (18%) Query: 913 VKDSSLRVPNGVSGTVIDVQVFTR---DGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 V + N V ++ R + K I + Q + A Sbjct: 714 VAIACYSGYNQEDSIVFNMTSLQRGLFRSMSLYKYISSITKNQETSGNDKFMKPPPDKMA 773 Query: 970 GLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL 1029 G + L G E+ D + N + ++ K + + Sbjct: 774 GTKNGNYDKLNEHGYIPEETQITKGDVIFGKVTPINDTTNTGRIFKDSSEQYKSYADGVI 833 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 + I D + K + +R + GDK RHG KG I DMP+ + Sbjct: 834 DRVYTDIKNQD-----GYETRKALVRSERFPRIGDKFCSRHGQKGTIGISLRGIDMPFTK 888 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 G DI++NP +PSRM+I Q+ E G G ++ + ++ +++ ++ Sbjct: 889 WGIRPDIIVNPNAIPSRMSIAQLCECLFGKVGALKGMNMDGTAFEDYDIDAMKDMLESLG 948 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 + +G Sbjct: 949 YQRECE-----------------------------------------------EYLYNG- 960 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 G+ + + +G Y +L H+V DK+HAR G +++T+Q G+++ GG R Sbjct: 961 ------MLGKMIKHMIFIGPTYYQRLRHMVQDKIHARGRGPVTILTRQAPEGRSREGGLR 1014 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK---------------------M 1304 GEME A+ +G A L+E + +D V G Sbjct: 1015 LGEMERDAVITHGIAKFLKERMLDCADAYSTYVCGICGMFARREDSRFSEPTPGPDDVYY 1074 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P +F ++L+E+ ++ I + + Sbjct: 1075 CPKCNNYTDIHQIMIPYAFKLMLQELMAMNIAPRIRVQ 1112 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 120/878 (13%), Positives = 255/878 (29%), Gaps = 123/878 (14%) Query: 204 LPATIILRALNYT---TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 +PA + + N E + ++ + I + ++ + + + I+ N Sbjct: 41 IPAMVRSKYCNLNIYKEETRDECKYDPGGYFIINGSEKVVICQDSMIKNHPMVFIKKNSN 100 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + + ++ + + ++ V + E ++ A S Sbjct: 101 V---SNKVVQVNSKSNDPTSMMQSVLIKIKKDGIMTVKISVLYEVNVMILFRALGIESDR 157 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYIS-ETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 + ++ + + ++ + + A+ + M+ + T Sbjct: 158 DIIEICAYDKTDYHMIELLRVSLETCVNDNDDQEHKIQTQEEAIDLLITKMKVLKNYTNT 217 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 + FE ++ + ++ KL+ + G+ Sbjct: 218 NLSTRFEQKKLHLLDLLKTSFLPHIE------GSPSNPYREKAYYLGYIINKLLKVELGR 271 Query: 440 GEVDDIDHLGNRRIRSVGEMAEN----QFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 VD+ D +RI ++ E+ E Q++ + + R+ D D P ++I+ Sbjct: 272 APVDNRDAYTKKRIDNIRELLEEIMIQQYKNNMNECSKQFTARMG-DDGDAADPYNVIHQ 330 Query: 496 KPISAAVKEF-----FGSS----QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 + F G+ +SQ + +N+ + +T RI + + Sbjct: 331 FKAGTFEQGFKASIMIGNWSRKKGVSQMLQRNSYMQLLTSLSRIDS--QSSTQSAGRLTK 388 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSV--YAQTNEYGFLETPYRKVTDGVVTDEIH 604 R V P+ +C + TPE NIGL+ LS+ + E + + +I Sbjct: 389 PRHVDPSTVPFLCVVSTPEHGNIGLVKHLSMIGSITIGDKDNTEIVKEFIMTHPLVKDIS 448 Query: 605 YLSAIEEGNYVIAQANSNLDE----------------EGHFVEDLVTCRSKGESSLFSRD 648 + E N N + F D + E + Sbjct: 449 EVPVYELKNMFKVFLNGEWLKVVENSYDVGDNYYDNPVIKFYSDAKVKKISCEFNPQMTS 508 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD------------ 696 V + + + L + + + +M + D Sbjct: 509 VVFDYKDNEIRFNTDSGRLYRPVIRINGDNEMMLTKEMIDKISLKATDVGKISDWDEFYI 568 Query: 697 --------------------KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 + ER +DS + + ++ Sbjct: 569 QYPYPIEFIDSEEQPFMLIAEDRKVLNFERKKIIDSEKHVFKGEESKIVNRFDDKFFLRY 628 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVLAD-------- 785 + E++P +I + N +N +G D Sbjct: 629 DSIEIHPSVLLSEIATNIPFCEKNCSTRNIYQYAQGKQGMGVYCTAYRSRTDLSFILYNP 688 Query: 786 ---------GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 T L G N VA ++GYN EDSI+ + +Q F ++ + + Sbjct: 689 EVPVVNTRTSKYTYTDILPPGSNAVVAIACYSGYNQEDSIVFNMTSLQRGLFRSMSLYKY 748 Query: 837 --ACVSRDTKLGPEEITADIPNV----GEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + G ++ P+ KL+E G + ++T GD++ GKVTP Sbjct: 749 ISSITKNQETSGNDKFMKPPPDKMAGTKNGNYDKLNEHGYIPEETQITKGDVIFGKVTPI 808 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 +T T KDSS + + G + V K++ E + Sbjct: 809 NDTTNT-------------GRIFKDSSEQYKSYADGVIDRV-----YTDIKNQDGYETRK 850 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 ++ + + G I L + K Sbjct: 851 ALVRSERFPRIGDKFCSRHGQKGTIGISLRGIDMPFTK 888 >UniRef50_Q06VE3 RNA polymerase subunit n=3 Tax=Ascovirus RepID=Q06VE3_TNAVC Length = 1160 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 140/988 (14%), Positives = 308/988 (31%), Gaps = 148/988 (14%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M +Y K + F K + QLDSF F++ + P+ Sbjct: 1 MSTTYDSYKVVELWFKKY-------GTVKAQLDSFTSFLDN-------IRTVLHDEPPLV 46 Query: 61 SYSGNSELQYVSYRLGEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 G +++ + P + +++G+ Y + V + Sbjct: 47 --IGGEVIRFENVTFLTPSYLVNGISKTLYPSIARMKGLNYEFTMCVDV----------I 94 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVING---TERVIVSQLHRSPGVFFDSDKGKTHSSG 168 +++ V + ++P M + + G E + ++ PG +F H+ Sbjct: 95 NETTGVRDNGVELCQLPCMVGSEMCNLKGMSDAELLTHGEILGIPGGYF------IHNGV 148 Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV 228 + + I P + + ++ ++ R T +A+ I + Sbjct: 149 ERVLIGHIKPAYNTPIVYKTRNDK--WICQLRSMNDE-TAKSKAVA-----ITRSNSGAL 200 Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 + E ++ + + G+ D + + + + +R L + Sbjct: 201 VVEFDSGAVRTTITTKSANGKE---DTSTSTTITAGAKVFLVSEVMRDLL---GGDLGKL 254 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 Y+ G + +I ++ E++ A L ++ + L I Sbjct: 255 KTYLGGDYLDTTHISDTVDEILQAPENLQVYPELVRVVRECINN----GEKPLTITTTIK 310 Query: 349 ETLRV-DPTNDRLSALVEIYRMMRP-GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + L V + ++ E+Y + P +E A+ + + Sbjct: 311 KILVVPKRVSTKVIQRSELYNRLEPVIRECVKEGADITDIMVIVNNAAKYKPLHDYSTLF 370 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + ++ + +++++ + G + + + +R+ G M + F++ Sbjct: 371 MHIGIRC---DNVVRAHFLGNMIRRYVLTEKGAIKEESREQYSKKRVDFAGTMCLDLFKM 427 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINA--KPISAAVKEFF--GSSQ-----------L 511 + R S D P + INA + I +K F G + Sbjct: 428 TWKQFLIDAASRTS----DRCNPINAINAVKRGIGYQIKMCFVHGRWGAKNAEHKTIGIV 483 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 + + + I RR+ + +E +R + +H C +ET EG ++G+ Sbjct: 484 EAIPVKTSVATSIDSLRRMKL----QVHKENKDRSIRKLCTSHAFFACCVETTEGADVGI 539 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS--AIEEGNYVIAQANSNL------ 623 +L+ A + + ++ L A I + + Sbjct: 540 RLALAAVAFASVRQPTMLVRDIIEFTLLDKLKPTLECVATSPKYAAILLNGTPIGYVEDH 599 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH--DDANRALM 681 + + L R + S D + V V + L D +M Sbjct: 600 EITIKILRKLRDLRRFNDDVSISMDYI----VKCIDVWCDCGRFVRPLLVKSHDMCEKIM 655 Query: 682 GAN-MQRQAVPTLRADKP--------LVGTGMERAVAVD-----SGVTAVAKRGGVVQYV 727 AN M + + + T E + + + G + Y Sbjct: 656 EANTMDELEQSLVVVHRDAIEISRSEIAMTPNEAILDDYEYSELNPSCMLGLLAGEIPYA 715 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN--QMPCVSLGEPVERGDVLAD 785 + + + M GI + +++K+ + + +N Q P ++ Sbjct: 716 NYTPSPRACYKTNMARQSMGI-LPSISKFNNHSNSIHLNYAQAPIITTRC---------- 764 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 +T + E G N VA M G+N EDSI++++ + F +E+ R + Sbjct: 765 AKATKVNEYPNGINAIVAVMAHTGFNQEDSIIINKSALDRGMFNATQRREITVDLRIGTI 824 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 + A + E G+ +G+ + GD L+GKV+ T Sbjct: 825 VDDMCKPPEDLRIRANYDNIGEDGLPIMGSIIKKGDALLGKVSTDRNTS----------- 873 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQV 933 +D+S+ G V V++ Sbjct: 874 ------RREDTSIIARMQDEGVVKSVKI 895 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 80/440 (18%), Positives = 148/440 (33%), Gaps = 78/440 (17%) Query: 920 VPNGVSGTVIDVQ--VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 PNG++ V + F ++ ++ M +++++ +L+I Sbjct: 773 YPNGINAIVAVMAHTGFNQEDSIIINKSALDRGMFNATQRREITVDLRIGT----IVDDM 828 Query: 978 VLVAGGVEAE-KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + D + D +G ++ L +++ + + E + + + Sbjct: 829 CKPPEDLRIRANYDNIGEDGLPIMGSIIKKGDALLGKVSTDRNTSRREDTSIIARMQDEG 888 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN-GTPVD 1095 G V++ L V + GDK KG I P DMP+ + G D Sbjct: 889 VVKSVKIDG--SSVRIRLEVVLDVMIGDKFCSAMAQKGTCGMILPDIDMPFVADSGMIPD 946 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++N +PSRM + QI+ + G A I+ Q L Sbjct: 947 ILVNVHSMPSRMTVNQIMASMAGKLACITARNIDGSPFQLDVNDVLF------------- 993 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 ++ E L G + +G Sbjct: 994 --------------------------------------DLCEQLAEVKYDKDGCETMCNG 1015 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS-YSLVTQQPLGGKAQFGGQRFGEME 1274 TGE F P+ +G +Y L+ LV K+ + +T + + +T+QPL G+A GG R GEME Sbjct: 1016 LTGEMFSCPIFIGVVYYLRPVQLVRHKIFSSTTTTMRNHLTRQPLNGRAHEGGLRVGEME 1075 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNI----------------VDGNHQMEPG 1318 L +G+ LQE + SD Sbjct: 1076 KDDLLRHGSINFLQERMLTLSDKHIMMICTICGSESHVALRSDGSFVCLRCKQLMVNPIT 1135 Query: 1319 MPESFNVLLKEIRSLGINIE 1338 +P + + + ++ +G+ ++ Sbjct: 1136 IPYAAKLFFQYLQGVGLGVK 1155 >UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NYQ6_COPC7 Length = 1127 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 147/447 (32%), Gaps = 95/447 (21%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA--SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 TP Q + KL R G+ ++ + +GT V V + G + + Sbjct: 645 TPATAIQHRTDNKLYRLQTGQSPIVRPSLHNTYGMDAFPNGTNAVVAVISYTGYDMEDAM 704 Query: 946 LEIEEMQLKQAKKDLSEELQILE--------AGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 + + + + QI++ + +AG + + P Sbjct: 705 ILNKSAHERGFTYGTIYKSQIIDLKEVRGASKSSSTPTLHFGIAGDIRLTGDNAHPC--- 761 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL-------------AP 1044 D++ + D L + R +GD+ Sbjct: 762 --AEFVDKDGLPFPGVRVKPGDPLAAYIDDTTGRTRFVKYKGDETAYVDQVRLLGSDAGD 819 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 L+ V V L + R GDK + RHG KGV S+ P DMP+ E+G D+++NP P Sbjct: 820 SELQKVHVTLRIPRAPVIGDKFSSRHGQKGVCSQKWPAIDMPFSESGIQPDVIINPHAFP 879 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SR IG + +M + GA D + F Sbjct: 880 SR---------------MTIGMLVESMAGKA----------------GAMHGLAQDATPF 908 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E + + L G +Y G TG++F Sbjct: 909 KFTE-------------------EDTAIDYFGKQLLAAGYNYYGNEPMYSGITGQEFAAD 949 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G +Y +L H+V DK G+ + GG RFGEME AL A+G + Sbjct: 950 IYFGVVYYQRLRHMVLDKFQ----------------GRKRAGGIRFGEMERDALIAHGTS 993 Query: 1285 YTLQEMLTVKSDDVNG-RTKMYKNIVD 1310 + LQ+ L SD + +++ Sbjct: 994 FLLQDRLMNCSDYSTAWVCRTCGSLIS 1020 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 98/751 (13%), Positives = 209/751 (27%), Gaps = 118/751 (15%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I N ++ I + +Y + T L Sbjct: 155 GYFVINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQIRCVRPDQTSVTNTLH 214 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE-----TLRVDPTNDRLSALVE 365 AN + + + L I E DR+ L+ Sbjct: 215 YLANGSAMFRFTWRKQEYVIPIMLILKALVNASDKEIFEGVVMQDYDNTFLTDRVELLLR 274 Query: 366 IYRM--MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 ++M M GE + L ED + +A+G + +L Sbjct: 275 SFKMYTMHTGEQCLEYLGDKFRVVLNLPEDWTN-AAIGAWLIQKLVLVHLETPR--DKFR 331 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG- 482 ++ +++K+ + +G+ D+ D ++ + G + + + + A++ +++ Sbjct: 332 MLLYMLRKMYSLISGECCADNPDSPQHQEVLLPGSLYGMIIKERMEEILNAIRATIAMDV 391 Query: 483 ------DLDTLMPQDMINAKP---ISAAVKEFFGSSQLSQ--------------FMDQNN 519 D + K I + + F + L ++ N Sbjct: 392 RTGANVDFHDKKYFAKVLTKVNFDIGSKMSNFLATGNLVSPTGLDLQQASGFTIVAEKLN 451 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 I+H R + G E VR + P + + N L+ + Sbjct: 452 WQRYISHFR---CIHRGAFFAELKTTTVRKLLPEAW------------VAHIPNLLAAHG 496 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 + + DG ++ VI A + +L +++ Sbjct: 497 -------MTQSFATSIDGRKNL------CVQLDGRVIGWARPVV--AAQLATNLRIWKTE 541 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 G+ + ++ ++ + L F R + + Sbjct: 542 GKYEVPLDLEIGFV---PESHGGQYPGLFLFSTKARFMRPVKYLANGKDDQI-------- 590 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP-------GEAGIDIYN 752 G V ++ T GV +V+ M P G+ + Sbjct: 591 ---GSFEQVYMNIACTPEEIEEGVSTHVEHDPTNFLSILANMTPFSDFNQMGKQTMGTPA 647 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 R++ Q + P D G N VA + + GY+ Sbjct: 648 TAIQHRTDNKLYRLQTGQSPIVRPSLHNTYGMDA-------FPNGTNAVVAVISYTGYDM 700 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG------------EA 860 ED++++++ + + ++ + + + + G Sbjct: 701 EDAMILNKSAHERGFTYGTIYKSQIIDLKEVRGASKSSSTPTLHFGIAGDIRLTGDNAHP 760 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPK-----------GETQLTPEEKLLRAIFGEK 909 +D+ G+ + G V GD L + ET + +LL + G+ Sbjct: 761 CAEFVDKDGLPFPGVRVKPGDPLAAYIDDTTGRTRFVKYKGDETAYVDQVRLLGSDAGDS 820 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 +LR+P VI + +R G + Sbjct: 821 ELQKVHVTLRIPR---APVIGDKFSSRHGQK 848 >UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK45_9CRYP Length = 1100 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 88/424 (20%), Positives = 161/424 (37%), Gaps = 66/424 (15%) Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 SG V + + G + + + + ++ + + + + L A Sbjct: 727 TSGINACVCILSYSGFDIEDAII----LNRSSIERGFFRSVIARKHKILLKNSDFLGAKS 782 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 E + + + + + + ++ Q+ + + +L K K + + Sbjct: 783 FERPLPNLEKFEEKKIKKIENYGEVVKFQKKKNQFLNFEKQIFSRLSLKEFKGEMIEKVI 842 Query: 1044 PGVLK----IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 VK+ L R+ + GDK + RHG KGV I +D+P+ +G D+++N Sbjct: 843 ISSNFLEIFFVKLILRQIRQPEVGDKFSSRHGQKGVCGAICFQKDLPFSNDGIIPDLIMN 902 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G ++ K+ Sbjct: 903 PH----------------GFPSRMTVGKV------------------------------- 915 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 E+M G I F +K A+IK+ LK+ + G+ + G TG Sbjct: 916 -------IEIMGAKIGSIFGKFIDGTPFIESKIAKIKKKLKIAGYSSEGKEFFFSGITGV 968 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 V G ++ KL H+V DK+HAR G S +T+QP+ G+++ GG RFGEME L Sbjct: 969 PMLMDVFSGPVFYQKLKHMVKDKIHARGKGPCSNITRQPIEGRSRGGGLRFGEMERDCLI 1028 Query: 1280 AYGAAYTLQEMLTVKSDDVNG----RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 +YGA+ + E L + SD T + + + + +P + +L +E++S+ I Sbjct: 1029 SYGASEAIIERLLISSDLTQANFDLHTGFFTDKKKSLNIVSLKLPYACKLLFQELQSMNI 1088 Query: 1336 NIEL 1339 L Sbjct: 1089 LPRL 1092 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 94/737 (12%), Positives = 238/737 (32%), Gaps = 107/737 (14%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 L F+ + K + K+P + + + IL F + + N+ ++ Sbjct: 98 LSFKIEKKKFNVFNFNLG-KIPIMLQ------SNKCIL--FSKNENEFLSLNECPLD--- 145 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 F ++ KV + + + R I + + V + + K + Sbjct: 146 -----PGGYFILKGTEKVILIQEQVSANR-INIEQDQHGSICAVVNSFSSNKKIRNVVFL 199 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE----TLRVDPTNDR 359 ++ + L L G ++ + I E ++ + Sbjct: 200 KNQKLYFKHKLFVEEIPLFIFLKSLGFEKDREILDLIGKEYENILEWSLFETKLAGITSK 259 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+ I + + + + + + + + + + G+ Sbjct: 260 KQAIFYIVQRFNFNLFEKKFSDNAFKSKSYSENEFFFKEGLTKFILTHLTPKVFYGGNLE 319 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + ++KK+ N D+ D+ GN+R+ G + F + + + Sbjct: 320 EKGIFLSLMVKKIFSNLNQPMITDNKDYYGNKRLGLAGNLVSILFEDFFRKTLKEGYKYY 379 Query: 480 SLGDLDTLMPQDM-----INAKPISAAVKEFFGSSQL------------SQFMDQNNPLS 522 L Q + + I+ ++ F + +Q + + + +S Sbjct: 380 KLNSTKLKKNQHLELISFLRQDIITNGLEYSFSTGNWIVKKLKIEKNGVTQTLSRLSFIS 439 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 I+ +I++ + R R +H + +G +CP +TPEG + GL+ L++ A + Sbjct: 440 SISIVTKITSQNE----KIRKIRGPRSLHSSQWGMICPTDTPEGESCGLVKDLTILAHIS 495 Query: 583 ----EYGFLETPYRKVTDGVV--TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 + Y + ++ + +L ++ + + +F+ + Sbjct: 496 VKIKTRFITQLCYDLGIENLIHPKKKNFFLEKKICKIFLNGRYLGIHNNPSYFMYSFRSM 555 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV-----P 691 R G + + D + ++ F + R + ++ + + Sbjct: 556 RRSGMINYYVSIFWD----------TFSEEIVIFTDEGRICRPFLIVDLGKVKIKNFEKK 605 Query: 692 TLRAD----KPLVGTGMERAVAVD-----------------------SGVTAVAKRGGVV 724 L+ + K L TG+ + V+ S + ++ Sbjct: 606 LLKKNLTFCKDLFLTGLLEFLDVNEQNNAFIAQSPQYINNKTTHLEISPEIVLGICASLI 665 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN---TCINQMPCVSLGEPVERGD 781 ++D ++ + M G+ I +L + R + Q P V G Sbjct: 666 PFLDHNQSPRNTYQCAM--GKQAIGSISLNQNQRCDTILSLLIYPQKPLVKTKMVYFSG- 722 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 L G N V + ++G++ ED+I+++ ++ F ++ ++ + + Sbjct: 723 ---------NNRLTSGINACVCILSYSGFDIEDAIILNRSSIERGFFRSVIARKHKILLK 773 Query: 842 DTK-LGPEEITADIPNV 857 ++ LG + +PN+ Sbjct: 774 NSDFLGAKSFERPLPNL 790 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 111/771 (14%), Positives = 237/771 (30%), Gaps = 137/771 (17%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 +K+F +L L+ Q++SF F+ D + F + I + L++ Sbjct: 6 KKNFNLVSYILKSKGLIWQQIESFNYFLNTDIKKI-----IFMNQKKIFDSDDSFFLKFS 60 Query: 72 SYRLG---------EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 ++G E +C+ +Y+ + L I +++ Sbjct: 61 KLKIGLASEYLNFMEMPISPYQCRTTDSSYTGTIFFDLSFKIEKKKFNVFNFN------- 113 Query: 123 YMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFD 158 +G+IP+M G F++ GTE+VI+ Q S Sbjct: 114 -LGKIPIMLQSNKCILFSKNENEFLSLNECPLDPGGYFILKGTEKVILIQEQVSANRI-- 170 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE 218 + + + + F ++P I L++L + + Sbjct: 171 -NIEQDQHGSICAVVNSFSSNKKIRNVVFLKNQKLYFKHKLFVEEIPLFIFLKSLGFEKD 229 Query: 219 -QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 +ILDL ++ + + + +L + + + ++ EK A + Sbjct: 230 REILDLIGKEYENILEWSLFETKLAGITSKKQAIFYIVQRFNFNLFEKKFSDNAFKSKSY 289 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 +++ E ++I + K + + E ++ + + Sbjct: 290 SENEFFFKEGLTKFILTHLTPKVFYGGNLEEKGIFLSLMVKKIFSNLNQPMITDNKDYYG 349 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 L + L D L + Y++ + F + + Sbjct: 350 NKRLGLAGNLVSILFEDFFRKTLKEGYKYYKLNSTKLKKNQHLELISFLRQDIITNGLEY 409 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 S + L E+ + LS+ I + + I + ++ R+IR Sbjct: 410 SFSTGNWIVKKLKIEKNGVTQTLSRLSFISSISIVTKITSQNEKI--------RKIRGPR 461 Query: 458 EMAENQFRV-------------------GLVRVERAVKERLSLGDLDTLMPQDMINAK-- 496 + +Q+ + L + +K R L +++I+ K Sbjct: 462 SLHSSQWGMICPTDTPEGESCGLVKDLTILAHISVKIKTRFITQLCYDLGIENLIHPKKK 521 Query: 497 --PISAAVKEFFGSSQLSQFMDQNNP--LSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 + + + F + + + + S + +R + + E+ Sbjct: 522 NFFLEKKICKIFLNGRYLGIHNNPSYFMYSFRSMRRSGMINYYVSIFWDTFSEEI----- 576 Query: 553 THYGRVCPIETPEGPNIG--LINSLSVYAQTNEYGFLETPYRKVTDGV-VTDEIHYLSAI 609 I T EG LI L N L + +T + +L Sbjct: 577 -------VIFTDEGRICRPFLIVDLGKVKIKNFEKKLLKKNLTFCKDLFLTGLLEFLDVN 629 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 E+ N IAQ+ ++ ++ ++++S + V+ + ASLIP Sbjct: 630 EQNNAFIAQSPQYIN-----------------------NKTTHLEISPEIVLGICASLIP 666 Query: 670 FLEHDDANRALMGANMQRQAV----------------PTLRADKPLVGTGM 704 FL+H+ + R M +QA+ + KPLV T M Sbjct: 667 FLDHNQSPRNTYQCAMGKQAIGSISLNQNQRCDTILSLLIYPQKPLVKTKM 717 >UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrella patens subsp. patens RepID=A9RIU1_PHYPA Length = 472 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 92/425 (21%), Positives = 161/425 (37%), Gaps = 56/425 (13%) Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 +G + + + + G ++ L + K + E+ + F V V G Sbjct: 93 NGVNVVIAILSYFGYNQEDSLLFNKSSIDKGLFSSIEYEVVEIIENKFMNEILVYVPDGD 152 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 D + + + D + + E+ ++ K ++ + Sbjct: 153 ILRDNDGI---ILVGQQVKDGDTIAAKLVITEKKQSIEKIVLKSFVSRWVDKVTKHT-SV 208 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 KIV+V + + R G K RH KG+I I ED+ + ++ D+++NP +P Sbjct: 209 EGNKIVRVRILLYRFPIVGHKFTSRHSQKGIIGAILSQEDLSFTKDEIAPDLIINPHVIP 268 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM +G +LE + + Y L ++ + Sbjct: 269 SRMTMGHLLEMV----------------------------MYKIYVLDSNNAR------- 293 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + ++ R+ I VF+ A + D+ + ++Y G T E Sbjct: 294 --DPMLSSKPKSRESSCIDATVFNRAHRSF------EADIAKLCKEKMYCGATRLPIEAI 345 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 V G Y L H DK H+ S G +T+QP+ G+++ GG RFGEME L A+G A Sbjct: 346 VATGICYYHVLRHQARDKAHSISKGVIQSLTKQPVEGRSRKGGLRFGEMEKDYLIAHGVA 405 Query: 1285 YTLQEMLTVKSD--------DVNGRTKMYKNI-VDGNHQMEPGMPESFNVLLKEIRSLGI 1335 L E L SD D + +I +G + E +P SF +L +E+ I Sbjct: 406 SMLFEKLKNTSDLYEIWIYHDCSMICSSSPSINCNGRNTKEHRLPYSFKLLAQELSIANI 465 Query: 1336 NIELE 1340 + L+ Sbjct: 466 RVGLK 470 Score = 106 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 27/228 (11%) Query: 697 KPLVGTGMERAVAVDSGVTAV-----AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 + + T + + + + +V+ ++ V + M + ++ Sbjct: 2 QCFIATTHDSICNQHTHIEIHPSFMFELSASMTPFVNFNQSSRIVFQSAMSKQAMPLALH 61 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 +T ++ Q P ++ ++ G N+ +A + + GYN Sbjct: 62 IMTNMISDSKILTYAQKPI-------------CTTTISNTIKVYNGVNVVIAILSYFGYN 108 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 EDS+L ++ + + F++I + + + EI +P+ L D GI+ Sbjct: 109 QEDSLLFNKSSIDKGLFSSIEYEVVEIIENKF---MNEILVYVPD--GDILR--DNDGII 161 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV-KDSSL 918 +G +V GD + K+ E + + E+ +L++ V K +S+ Sbjct: 162 LVGQQVKDGDTIAAKLVIT-EKKQSIEKIVLKSFVSRWVDKVTKHTSV 208 >UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QA33_LEIMA Length = 1616 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 94/475 (19%), Positives = 153/475 (32%), Gaps = 101/475 (21%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + +I+ R + +I K + KD L + R A Sbjct: 1185 YTGYDMDDAVIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTG-ERFTA 1243 Query: 978 VLVAGGVEAEK----LDKLPRDRWLEL-GLTDEEKQNQLEQLAEQYDELKH----EFEKK 1028 L A G+ ++ LD DR + GL D + E+ D + E+ + Sbjct: 1244 ELEANGLPPKRANASLDAFSFDRDHKYPGLRDNNDVYCCAKRVERVDPFTNKAVYEYTRH 1303 Query: 1029 LEAKRRKITQGDD----------LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 K R +G+D + V + + R GDK + RHG KG + Sbjct: 1304 HATKWRHFDKGEDAWVQQVIPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPL 1363 Query: 1079 INPIEDMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 D+P+ +G D+++NP PSRM +G +LE G I+ Sbjct: 1364 HIRSHDLPFATASGITPDVIINPHAFPSRMTVGMVLEIMTAKVGAIEGRFID-------- 1415 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 +T I E Sbjct: 1416 -----------------------------------------NSAWSTVDEQPRVAELIGE 1434 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV--- 1254 L G+ L DG +GE+ + V +G +L H+V DK AR+ Sbjct: 1435 ALVKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDAHTYRAV 1494 Query: 1255 --TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK----- 1303 T QP+ G+ + GG R GEME L ++G + + + L SD + R Sbjct: 1495 TKTGQPVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSLLSL 1554 Query: 1304 ------------MYKNIVDG-----NHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + G + +P+ + E+ S+GI + L+ Sbjct: 1555 YERHATEYGTWRTCRFCGAGADESTDSIAMVEIPQVLRLWAAELTSIGIRVVLKT 1609 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 82/545 (15%), Positives = 169/545 (31%), Gaps = 108/545 (19%) Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 D +I + ++L +G E D + + +V ++ F V L R R RL+ Sbjct: 723 KFDAMIAITRQLYLFIDGAVEHQGNDVPAYQELFTVSQVLMGAFEVCLNRYMRGFVYRLA 782 Query: 481 LG-------------------DLDTLMPQ---------------------DMINAKPISA 500 D + M Q ++ I+ Sbjct: 783 RHLPAALFRRILSLRTLLPPVDAEDTMRQVRQFAEFCGRHGGSDPLDQLARLLVTGNINL 842 Query: 501 AVKEFF---GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 +E F +S + N R + G + EVR YG Sbjct: 843 DREEDFYCPQTSGWVVMAEHLNFYRFFEQLR---CVHRGKTIADMRSSEVRKYPCEAYGF 899 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGF--LETPYRKVTDGVVTD--EIHYLSAIEEGN 613 +C +++P+G + G++N LSV ++ + R++ V LS + + Sbjct: 900 ICMVQSPDGEDCGVLNHLSVSTISSNSPDAAMTAQLREIVRKAVPGVRSRATLSTVVDQL 959 Query: 614 YVIAQANSNLDEEGHF-----VEDLVTCRSKGESSLFSRDQVDYM----DVSTQQVVSVG 664 + G+ VE T R + +L S+ V + D S + V Sbjct: 960 CETVPVWMEGELLGYLSPADAVEAAATLRERKALTLRSQVHVTGIVRRKDASPLHTLEV- 1018 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADK-----------PLVGTGMERAVAVD-- 711 + + D + + R P R + PLV G +D Sbjct: 1019 --VYVAPKSKDPAGLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIA 1076 Query: 712 ----------------------SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 +G ++ + + + + + + + +G Sbjct: 1077 AVPSDPLDAVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQ 1136 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 + L R P + R + D D ++ LG N +A + + G Sbjct: 1137 LQALAW--RKEAKLFRTYCPQ----RYISRTLPM-DYYGLD--DVNLGVNAVIAILAYTG 1187 Query: 810 YNFEDSILVSERVVQEDRFTT--IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 Y+ +D+++++ Q T + + + + + ++ + GE ++L+ Sbjct: 1188 YDMDDAVIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEA 1247 Query: 868 SGIVY 872 +G+ Sbjct: 1248 NGLPP 1252 >UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S96_GUITH Length = 1049 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 88/480 (18%), Positives = 172/480 (35%), Gaps = 73/480 (15%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEE-------KLLRAIFGEKASDVKDSSLRVPNGVSG 926 E++ G+IL + P + +P K + G + D +L + Sbjct: 629 EISEGNILGISASLIPFSDHNQSPRNTYQCSMGKQSASFLGFNQNSRIDITLSLLIYPQK 688 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 ++ ++ G K + + D+ + + + ++ + + Sbjct: 689 PILKTKILNLIGAGKCPTGINTCISIMSFTGYDVEDAIILNKSSVERGFFKTAF---LRK 745 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 K++ +L ++ + + + + L+ + L Sbjct: 746 TKIEISSFRHLTQLFSKVNHNNKEVFEFLNKSNNNNQKITSNLKYSDNLVVVKYGLD--- 802 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L + K + R + GDK + RHG KG+ I P +DMP+ E G DI+ Sbjct: 803 LTLAKFLIRECRNPEIGDKFSSRHGQKGICGFIKPQQDMPFSEKGICPDII--------- 853 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 + H + IG I +L + Sbjct: 854 ------MNPHGFPSRMTIGKTIEIILSK-------------------------------- 875 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 G +F I + L+ ++G+ +Y+G TG + Sbjct: 876 -------SGCISGKFKDGSIFKKININTIVKSLRSFGFVSNGEDFMYNGITGNLINNQIY 928 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G ++ +L H+V DK+H+R+TG S +T QP+ G+++ GG RFGEME L ++GA+ Sbjct: 929 SGIVFYQRLKHMVKDKIHSRATGIKSKLTYQPVEGRSKGGGLRFGEMERDCLISFGASEL 988 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIV----DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + L + SD + I+ + + +P + +LL+E++S+ I L Sbjct: 989 ALDRLLLNSDCYEAKFDKNSGIIHTSNSNTNVVAVKIPYACKLLLQELQSMNIIARLNFN 1048 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 135/958 (14%), Positives = 301/958 (31%), Gaps = 124/958 (12%) Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 + K + +++RI + D +LF+RI+ ++K ++ + Sbjct: 57 IGTFFEKNIGNTVTPFHSRI-----KDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLM 111 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 + + + K + + E F I+ KV + + + + R + Sbjct: 112 LKCNRCILYGK-------KEDFYIKINECPLDPGGYFIIKGTEKVILIQEKLVLNRIGIE 164 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 +K V Y + I E+ +E + + L G + + Sbjct: 165 KDKSGNFYSYVISSYKKRNTKSFIIIKENKIYFRNKIFIE-DIPIFIILKAFGFENNLDI 223 Query: 337 FTNDLDHGP----YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE 392 Y ++ ++ + + + + E + F F++E Sbjct: 224 IDLIGYEFESTLFYSLTESLKIGFVNQFQSVCYLMQKL---DIRFIETNKITF---FYNE 277 Query: 393 DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 Y + + ++ + + + +++KL+ +D D+ GN+R Sbjct: 278 SNYQILD---HILSHIIVNKNPVSQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKR 334 Query: 453 IRSVGEMAENQFRVGLVR--VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 + G++ E L + +E +++ + I + IS ++ F + Sbjct: 335 LELSGDLVEILLEDLLHKSWIESKKFIEKKKIEVNETIYHHFIKSDFISYGIENAFITGN 394 Query: 511 LS------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 Q + + + +S + + S+ + R R++HPT + + Sbjct: 395 WKINKYGIDKNGITQILSRLSFMSSFSMLLKTSS----NFEKTRKSISPRNLHPTQWRFI 450 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY---V 615 C +TPEG + GLI +L++ + + + ++ + S NY Sbjct: 451 CTSDTPEGESCGLIKNLALLSHISIQEND--YFLAKVCNILGVDSKLSSIKTIKNYLNMT 508 Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL-EHD 674 N L F + C + + ++ S LI L + Sbjct: 509 KIFLNQKLIGFHQFPSKFLFCFRNMR-------RSNLIESSVSIYWDSTMKLIWILSDKG 561 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR--- 731 R L + + + + + G ++Y+D++ Sbjct: 562 RLCRPLY----------IIENGILKSKKKHLKLYSKKIINWNILTKFGFIEYIDSNEENN 611 Query: 732 ---------IVIKVNEDEMYPGE---AGIDIYNLTKYTRSNQNTCINQMPCVS------- 772 I + + E+ G + + + +S +NT M S Sbjct: 612 TIIADSLKAINFRSSHLEISEGNILGISASLIPFSDHNQSPRNTYQCSMGKQSASFLGFN 671 Query: 773 --------------LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 +P+ + +L G+ G N ++ M + GY+ ED+I++ Sbjct: 672 QNSRIDITLSLLIYPQKPILKTKILN---LIGAGKCPTGINTCISIMSFTGYDVEDAIIL 728 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE--SGIVYIGAE 876 ++ V+ F T +++ + + + N E L++ + I + Sbjct: 729 NKSSVERGFFKTAFLRKTKIEISSFRHLTQLFSKVNHNNKE-VFEFLNKSNNNNQKITSN 787 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV--IDVQVF 934 + D LV K LT + L+R + D K SS G+ G + F Sbjct: 788 LKYSDNLV---VVKYGLDLTLAKFLIRECRNPEIGD-KFSSRHGQKGICGFIKPQQDMPF 843 Query: 935 TRDGVEKD--------KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 + G+ D + I + K + + +F +I + + + Sbjct: 844 SEKGICPDIIMNPHGFPSRMTIGKTIEIILSKSGCISGKFKDGSIFKKININTIVKSLRS 903 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 D + NQ+ Y LKH + K+ ++ I P Sbjct: 904 FGFVSNGEDFMYNGITGN-LINNQIYSGIVFYQRLKHMVKDKIHSRATGIKSKLTYQP 960 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 65/453 (14%), Positives = 145/453 (32%), Gaps = 68/453 (15%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV-FPIQSYSGNSELQYVSYRLGEPVF---- 80 L+ Q++S+ K I Y L + + + I +Y+ E+++++ + F Sbjct: 11 GLIWQQIESYNKLI------NYQLISILKKIENEIWNYNSFLEIKFINTSMSIGTFFEKN 64 Query: 81 -----DVQECQIRGVTYSAPLRVKL-----------------RLVIYEREAPEGTVKDIK 118 +I+ TYS + L ++ + + + Sbjct: 65 IGNTVTPFHSRIKDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLMLKCNRCILYGKKE 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 + + + E PL G F+I GTE+VI+ Q + + + SG + + +I Sbjct: 125 DFYIKINECPL-DPGGYFIIKGTEKVILIQEK----LVLNRIGIEKDKSGN--FYSYVIS 177 Query: 179 YRGSW--LDFEFDPKDNLFVRID-RRRKLPATIILRALNYTTE-QILDLF---FEKVIFE 231 F ++ ++ R +P IIL+A + I+DL FE +F Sbjct: 178 SYKKRNTKSFIIIKENKIYFRNKIFIEDIPIFIILKAFGFENNLDIIDLIGYEFESTLFY 237 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 L++ V + + IR +E + + Y Sbjct: 238 SLTESLKIGFV-----------------NQFQSVCYLMQKLDIRFIETNKITFFYNESNY 280 Query: 292 -IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 I +++ ++++ + +++ + L + + +S Sbjct: 281 QILDHILSHIIVNKNPVSQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKRLELSGD 340 Query: 351 LRVDPTNDRLSA--LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 L D L + + + ++ F S + G K N Sbjct: 341 LVEILLEDLLHKSWIESKKFIEKKKIEVNETIYHHFIKSDFISYGIENAFITGNWKIN-K 399 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 ++ + ILS+ + L+ + + Sbjct: 400 YGIDKNGITQILSRLSFMSSFSMLLKTSSNFEK 432 >UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide B n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E487B4 Length = 830 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 100/275 (36%), Gaps = 70/275 (25%) Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V S + Y + + ++NP G PSR +G I + + Sbjct: 609 VCSIVWK-----YFCHFSVPQ-IMNPHGFPSR---------------MTVGKLIEFLAGK 647 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + +G F G K + Sbjct: 648 ---------------------------------------AGVLEGKFHYGTAFGGDKVVD 668 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 I E L+ G+ L G TGE + G +Y KL H+V DKMHAR+ G +++ Sbjct: 669 ICEDLRKHGFNYLGKDFLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVL 728 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KM 1304 T+QP G+A+ GG R GEME L YGA+ L E L + SD DV G Sbjct: 729 TRQPTEGRARDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFQVDVCGDCGLIGHSGW 788 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + +P + +L +E++S+ I L Sbjct: 789 CPYCHCSQNISSLRIPYACKLLFQELQSMNIIPRL 823 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 83/513 (16%), Positives = 173/513 (33%), Gaps = 61/513 (11%) Query: 184 LDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTE------QILDLFFEKVIFEIRDNK 236 +D E+ +R + ++P + T + ++ + + + I Sbjct: 131 VDIEYTRGQQRVIRNNLPIGRMPIMLRSSNCVLTGKSPAELAKLNECPLDPGGYFIVRGT 190 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 ++ L+ E+L +++ G V R R V +++ Y+ Sbjct: 191 EKVILIQEQLSKNRMIVEVDRKGIVSCNVTSSTHERKSR-----TVVIVKKGKHYLKHNT 245 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +D + A ME +++ + + E Sbjct: 246 FTEDIPI---VVIFKAMGMESDQEIVQTIGTEESTMVSFASN---------LEECHKIQV 293 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 +L AL + +R + +S + L+ + ++FN Sbjct: 294 YTQLQALKYMGMKVRQRRMWGGGSKKSKVDEARELLATTILAHIPVVQFNFR-------- 345 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 + +++++I+ + +VDD D+ GN+R+ G++ F + +K Sbjct: 346 ---AKSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQLIALLFEDLFKKFNSELK 402 Query: 477 E---------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITH 526 + R + D+ M QD I I+A G+ + +F M++ ++ Sbjct: 403 KYADQNIPRPRAAQFDIVKYMRQDQITNGLITAIST---GNWSVKRFKMERAGVTQVLSR 459 Query: 527 KRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 IS LG + R R + P+ +G +CP +TPEG GLI +L++ Sbjct: 460 LSYISCLGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLIKNLALMTHI 519 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNL----DEEGHFVEDLVT 635 E P K+ + + +H +S E + + N N+ E + Sbjct: 520 TT-DMEEAPIVKLAFNLGVEPVHLMSGEELSMKDVYVVFLNGNILGVVREHKRLMRTFRL 578 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 R G S F ++ + S G + Sbjct: 579 VRRAGYISEFVSICPNHAQRCVT-IASDGGRVC 610 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 71/438 (16%), Positives = 135/438 (30%), Gaps = 51/438 (11%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K ++ + P L V L+ +DSF FI + A +S FP ++ L Sbjct: 37 KAVKDKWKLLPAFLKVRGLVRQHIDSFNYFINVEVFSMN--FAPLQSTFPAEALP---YL 91 Query: 69 QYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKL-----------------R 101 QY++ +G P EC++R +TYSAP+ V + R Sbjct: 92 QYLNIYVGSPDVEESFNITKPTSPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPIGR 151 Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + I R + + + E PL G F++ GTE+VI+ Q S Sbjct: 152 MPIMLRSSNCVLTGKSPAELAKLNECPL-DPGGYFIVRGTEKVILIQEQLSKNRMIVEVD 210 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQI 220 K S V + R S + +P +I +A+ + ++I Sbjct: 211 RKGIVSCNVTSSTH---ERKSRTVVIVKKGKHYLKHNTFTEDIPIVVIFKAMGMESDQEI 267 Query: 221 LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD 280 + + + E ++ + + + V + R + + Sbjct: 268 VQTIGTEESTMVSFASNLEECHKIQVYTQLQALKYMG---MKVRQRRMWGGGSKKSKVDE 324 Query: 281 DVKLIEVPV-----EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK---- 331 +L+ + Y+ +I A + +D + Sbjct: 325 ARELLATTILAHIPVVQFNFRAKSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQ 384 Query: 332 RIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFS 391 I LF + + +A +I + MR + + +S Sbjct: 385 LIALLFEDLFKKFNSELKKYADQNIPRPRAAQFDIVKYMRQDQITN--GLITAISTGNWS 442 Query: 392 EDRYDLSAVGRMKFNRSL 409 R+ + G + L Sbjct: 443 VKRFKMERAGVTQVLSRL 460 >UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=Rhodospirillales RepID=D1GLJ0_GLUDI Length = 325 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 140/326 (42%), Positives = 190/326 (58%), Gaps = 29/326 (8%) Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+INGTERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++ Sbjct: 1 FIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVIPYRGSWLDFEFDSKDLIY 60 Query: 196 VRIDRRRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIF 230 VRIDR+RKLP T +L AL ++IL F+ +V+F Sbjct: 61 VRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGDVDALEIRGMDADEILGYFYNQVVF 120 Query: 231 EIRDNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 E RG + +G+V E ++TAR +R++ + +++ P Sbjct: 121 TKGPKGWARPFDAESFRGLKLLEPLVDAQSGEVVAEADAKLTARMVRKIAETTKEVLVGP 180 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G+ VA D ++ TGE+ A EL+ L L ++G ++ TL + +GP+I Sbjct: 181 AGLI-GRYVAHDLVNMETGEIYAEAGEELTEARLEALEEAGVDQLPTLAVDA-SNGPWIR 238 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 TL VD R AL +IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR+K N Sbjct: 239 NTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMFSGLFFDADRYDLSAVGRVKMNMR 298 Query: 409 LLREEIEGSGILSKDDIIDVMKKLID 434 L + + +L K+DI+ +K + + Sbjct: 299 LGLDAPDTIRVLRKEDILRTVKIMCE 324 >UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus RepID=Q6YH81_9VIRU Length = 1221 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 112/311 (36%), Gaps = 66/311 (21%) Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D+ K+VKV L R + GDK A KG + EDMP+D+NG D+++NP Sbjct: 966 DVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKNGVVPDLIINP 1025 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 + + + Sbjct: 1026 H---------------AFPSRMTVNYLLQMCFGTAA------------------------ 1046 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFD-GAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 + G F+ +I E K + LY G TG Sbjct: 1047 ---------------CKLGKTYDATAFEREDVVRDIAEAAKEAGIDCW-DSVLYSGSTGR 1090 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +L H+V KMH+R+ G +T+QP+ G+++ GG + GEME W Sbjct: 1091 RLPTKIFMAPCPYQRLRHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEMEQWCKI 1150 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKM----------YKNIVDGNHQMEPGMPESFNVLLKE 1329 ++G + +L+E + SD Y + D +P + +L +E Sbjct: 1151 SHGVSESLKESVYDTSDKYEVPVCKECGRISDHFEYCRMCDATDVSLVKLPYTTKILFQE 1210 Query: 1330 IRSLGINIELE 1340 +RS+GI+I + Sbjct: 1211 LRSIGISIAFK 1221 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 118/681 (17%), Positives = 218/681 (32%), Gaps = 125/681 (18%) Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 + + R +L EI G + + + ++K++ D +G G D D L N+R+ + G + Sbjct: 384 SKEDYVRHILAGEIFLHGGDAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLI 443 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPISAAVKEFFGSSQL-------- 511 L + + + S G L P ++ N+ ++ ++ F + Sbjct: 444 AFLLDGLLKQYVKLFVK--SAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPP 501 Query: 512 -------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 SQ + NN + ++H RRI ++ +R +H +HYG +CP ETP Sbjct: 502 SYVRVGVSQVLSNNNYGARVSHLRRI----MHAVSFRGKNIRMRQLHSSHYGFLCPYETP 557 Query: 565 EGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG-----NYVIAQA 619 EG +G++ +++ LETP V V + L EG + A Sbjct: 558 EGEKVGIVLNMA----EGVGFSLETPREAVLATVRLGK--GLPGFFEGAPARLAWSGAAG 611 Query: 620 NSNLDEEGH----------FVEDLVTCRSKGESSLFSRD-QVDYMD---------VSTQQ 659 ++++D +G FV + C + ++ + + + Sbjct: 612 SASVDVDGVLCGVTGDPVGFVREARLCLLGVSVVWKKVEREIHLLGCQGRFVRRVLDPEG 671 Query: 660 VVSVGASLIPFLEHDD--ANRALMGANMQRQAVP----TLRADKPLVGTGMERAVAVDSG 713 + P E D + A + P + + G + Sbjct: 672 IRGSRYDNPPPPEERDIEMDPAPSSSPSDFLPRPPGVYVCAQELSVCSLGDGEYADPPAS 731 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT-KYTRSNQNTCINQMPCVS 772 V+ + D ++ + M G N + +Y + Q V Sbjct: 732 EILTDAMSSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYPQKSLVD 791 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G E+A G VA M G+N EDS++++ + F+ + Sbjct: 792 SRSVKRLG----------FDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVT 841 Query: 833 IQELAC-VSRDTKLGPEEITADIPNVG----EAALSKLDESGIVYI---GA--------- 875 + ++C R TK E + +P+ G E L + G++ GA Sbjct: 842 YRTVSCADKRRTKYDSEVV--CLPDWGLRNREWDYDLLGDDGVIDPLCAGALVRRVEGKR 899 Query: 876 ----------------------EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 + G +LVGKV+ ++ E Sbjct: 900 KAAKRPVDQRTGGGPAGLCDALWIPAGTVLVGKVSH--------------SLGPEGNPVR 945 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 +D+SL V G + V V +K + + K S Q G Sbjct: 946 RDASLTVKQSEEGYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVL 1005 Query: 974 RIRAVLVAGGVEAEKLDKLPR 994 + L P Sbjct: 1006 TQEDMPFDKNGVVPDLIINPH 1026 Score = 59.9 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 69/232 (29%), Gaps = 55/232 (23%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP------- 78 + ++SF + + E +++ + R P Sbjct: 96 NFVRHHIESFDDMLWNEFPAMVAREKPV--------SVKGYRVKFGTVRYEPPCPDGKPW 147 Query: 79 -VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT------ 131 + TY + L + + +I + + +IP+M Sbjct: 148 EKLTPAMARRTDATYHSAAVCDLTVTDPK-------GLEIVYPRLELCKIPVMVGSAVCW 200 Query: 132 ---------------DNGTFVINGTERVIVSQLHRS---PGVFFDSD-KGKTHSSGKVLY 172 G F+I G ERV+V + + P V+ + D S Sbjct: 201 TRTEGSPLPGECPSDPGGYFIIKGKERVVVPHIRPAYDQPCVYKNCDGWLCEFRSVNRET 260 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILDL 223 ++ + + D + L + ++ +P ++ +AL T + + + Sbjct: 261 RQTVL------VQAKTDCRRKLEFSLPYIKQYVPVGLVFKALGKTAREAVAM 306 >UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax=Plasmodium RepID=RPOB_PLAFA Length = 1024 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 129/846 (15%), Positives = 295/846 (34%), Gaps = 20/846 (2%) Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +++ K I L E I +L + + N + + + T Sbjct: 2 IYIVNPILVKNNYIISNLYLLLIQEIIYNLRYYILFLNNNINVKFNFIYYKIIILLTNIN 61 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 + + +I + + + +I + I + Sbjct: 62 INSIDTIQNINNLLKIILTLKLNFININKIIKFNILIFILPFIYNNIIILNGLYKTCIQL 121 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + + + K + I L + + ++ Sbjct: 122 FKKNNKIFIIKFKNNNKNIIYVYIYISLGLRIIFKISKLNIDCYFNNFKFNFLILLLYLN 181 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRM-----KFNRSLLREEIEGSGILSKDDIIDV 428 + N ++ + + + N + + + I++ Sbjct: 182 NIYINKNISLFIYNNIINKKILIYNYIKFIYSKYNNINNIISLKLFIIKLNKFNNIYINL 241 Query: 429 MKKLIDIRNGKGEVDD--IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT 486 + L I+ D I+++ N++ S+ + + + L + + L++ Sbjct: 242 LNILFSIKLNFSYYSDFYINNIYNKKFYSIIDNLLIKSKKYLKIFKYQL---LNINRNIY 298 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 ++N K + E + L Q+ DQ N LSEI K +I+ + G ++ + Sbjct: 299 NNITLLLNNKKYINIILENININPLVQYSDQVNNLSEINQKFKINMITTGLNSKFILNND 358 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 +R++ G + I T EG GL+N L+ N Y+ + + L Sbjct: 359 LRELPRNILGYISLINTNEGLTCGLVNYLTTNIFLNLKYLFVIYYKHIFYNRY-NFKLLL 417 Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 + + Y I+ N L + +F + + +K + + Q + + + ++S + Sbjct: 418 NIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKICNITQ-NIIYIPFNYLLSFIEN 476 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 LIPF+ ++D+ R LM M Q VP + + + T + ++ + G+V Y Sbjct: 477 LIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISYQEGIVIY 536 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 V +I+I+ +++ + IY L Y + NQN + P V +GE V G +LA Sbjct: 537 VSCIKIIIR----DLFNRQI---IYYLNNYKKINQNILLIYKPIVWVGEKVNIGQILAIN 589 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 + E +LG N+ V + + GY +ED+I++S +++ + +T++H+ Sbjct: 590 SNLLNSEYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEISLNIINNI 649 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRAI 905 PE + ++ + + LD+ GI+ G + +IL+ K+ ++ + Sbjct: 650 PEICSINLSKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFL 709 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 FG K K+ + G VI +++ K ++ + ++ + + Sbjct: 710 FGSKLRIFKNKPIISTIHDIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGD 769 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 + + ++ + L+ + ++ + N + Y Sbjct: 770 KICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYGLNSLYL 829 Query: 1026 EKKLEA 1031 + Sbjct: 830 NTRYII 835 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 106/485 (21%), Positives = 185/485 (38%), Gaps = 70/485 (14%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV++G +V G IL L E L + S +I Sbjct: 573 IVWVGEKVNIGQIL-----AINSNLLNSEYSLGNNLLVGYG------SYLGYEYEDAIII 621 Query: 930 DVQVFTRDGVEKD---------KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 ++ + I E+ K + ++ L+ + ++ Sbjct: 622 SRKILYNNLYTSLHLNIYEISLNIINNIPEICSINLSKMYYKNIKHLDKYGIIKEGTYIL 681 Query: 981 AGGVEAEKLDKLPRD-------RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 A + KL +P + + + + + + ++ + ++ Sbjct: 682 ANNILISKLMFMPFIFNNKSLINIINFLFGSKLRIFKNKPIISTIHDIGRVIKIEILP-- 739 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 + ++Y+ +++ +Q GDK+ RHG+KG+IS I+ I D+PY N Sbjct: 740 -NHLYNKTEKNNIYLKFRIYIGIQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQ 798 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 DI ++ + +PSR+NIGQI E G+ + + + + I Y Sbjct: 799 PDIFISAISIPSRINIGQIFEGIYGLNSLYLNTRYIISNNLNKNYYNNYNHIFNYYKYNY 858 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + ++ + + L Sbjct: 859 NNNFNINSKMSYN----------------------------------------YNKYYLK 878 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 + TG + + +Y KL H++ DK R G YS +TQQP+ G + GGQRFGEM Sbjct: 879 NPFTGNMINNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEM 938 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEA+GA+Y +E T KSDD+ R + + + + E+F ++LKE++SL Sbjct: 939 EVWALEAFGASYLFKEFFTYKSDDIKSRKILKNYLFNNYKIKNTFISETFKLILKELQSL 998 Query: 1334 GINIE 1338 INIE Sbjct: 999 AINIE 1003 >UniRef50_B9F8X6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9F8X6_ORYSJ Length = 1115 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 106/828 (12%), Positives = 247/828 (29%), Gaps = 119/828 (14%) Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 ++ ++ E F ++ KV + + + R I + + V Sbjct: 222 KDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRIIIDTDSKGRVIASVTSSTHE 281 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLL--AKLSQSGHKRIETLFTNDLDHGPYISETL 351 K ++++ L + ++ + + + + D +G + ++ Sbjct: 282 IKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMESDQEVAQMVGRDPRYGDLLYPSI 341 Query: 352 RV---DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 + + + AL + + ++ S Sbjct: 342 QECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSK------------------SILRDV 383 Query: 409 LLREEIEGSGILSKDDII--DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + SG I ++++++D DD D++GN+R+ G++ F Sbjct: 384 FVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLLFED 443 Query: 467 GLVRVERAVKERLSLGDLDT----LMPQDMINAKPISAAVKEFFGSSQL----------- 511 + E ++ L I I+ ++ + Sbjct: 444 LFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRMHRKG 503 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 SQ + + + ++ + + RI+ + R R + P+ C ++G Sbjct: 504 VSQVLSRLSYMASLGYMTRIT----PQFEKTRKTSGPRALQPSQ----C-------YSLG 548 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 + LS+ + E + + +G++ + + F Sbjct: 549 -VEDLSLLS--GEEIHASGSFLVMFNGLILGK--------------------HRQPQRFA 585 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + R G F V+ + S G + L D + + +Q Sbjct: 586 NAMRKLRRSGIIGEFVSIFVNEKQ-HCIHIASDGGRVCRPLIIADKGIPRVKEHHMKQLR 644 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE-AGID 749 +R+ + G+ + V+ + + ++D++ I+ Sbjct: 645 DGIRSFDDFLRDGLIEYLDVNE------------ENNALIALYEHEDQDDVQRSSITHIE 692 Query: 750 IYNLTKY--TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 I LT R++ + V P+ + +L GQN VA M + Sbjct: 693 IEPLTILGLFRADSLLYL----LVYAQRPLLTTKTI---ELVGYDKLGAGQNATVAVMSY 745 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL----- 862 +GY+ ED+I++++ + I +++ + G + + AL Sbjct: 746 SGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKDGALLKQNM 805 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS--LRV 920 LDE G G + DI V K TP+ + + D KDS + Sbjct: 806 RALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSG--------AHLTDRDYKDSPAVYKG 857 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 +G + V V + + + + + + + K S Q G + Sbjct: 858 VDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPF 917 Query: 981 AGGVEAEKLDKLPRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFE 1026 + L P G + +K + + ++ + + Sbjct: 918 SERGICPDLIMNPHGFPSAFGEPSGNADKVEDISRTLVKHGFSYNGKD 965 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 16/175 (9%) Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 P + K +I L +G+ LY G G + V +G +Y KL H+V D Sbjct: 937 FGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMVLD 996 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 KMHAR++G L+T+QP G+++ GG R GEME L AYGA+ + E L + SD + Sbjct: 997 KMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISSDPYQVQ 1056 Query: 1302 TK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +G + + MP + +L +E++++ + L+ Sbjct: 1057 VCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRLK 1111 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 66/432 (15%), Positives = 139/432 (32%), Gaps = 54/432 (12%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS-YSGNSELQ-YVS 72 F P L V L+ +DSF FI + G+ ++ I++ + + L+ Y S Sbjct: 97 FALLPAFLKVRGLVKEHIDSFNYFITK------GIRNIVKANNRIEARNNPSIFLRQYNS 150 Query: 73 YRLGEP---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 R+G P C++ TYSAP+ + + ++ + I Sbjct: 151 VRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKRKPNFI------ 204 Query: 124 MGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDS 159 +G +P+M G F++ GTE+VI+ Q S Sbjct: 205 IGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRIIID 264 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNY-TT 217 K V + I + F K+ +++++++ + +P ++++A+ + Sbjct: 265 TDSKGRVIASVTSSTHEIKSK----TVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMESD 320 Query: 218 EQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 +++ + + E ER+ + + + +Y G + R L Sbjct: 321 QEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSKSIL 380 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 V + V K + + + I A+ D + ++ +L Sbjct: 381 RDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLL 440 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 DL S + + + + E E + R+ + Sbjct: 441 FEDLFKTMN-SNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRM 499 Query: 398 SAVGRMKFNRSL 409 G + L Sbjct: 500 HRKGVSQVLSRL 511 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 73/181 (40%), Gaps = 12/181 (6%) Query: 926 GTVIDVQVFTRDGVEKDKRAL-EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G I ++ +T + + I + Q + L + ++ L+ F+ ++ + Sbjct: 766 GRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDI 825 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 K + PR+ + G ++ + + + + R + D Sbjct: 826 YVNK--QTPRNTKRDSGAHLTDRDYKDSP------AVYKGVDGETTVVDRVMLCSDTDEK 877 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 ++K + + RR + GDK + RHG KGV I ED P+ E G D+++NP G P Sbjct: 878 LIIKCI---IRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 934 Query: 1105 S 1105 S Sbjct: 935 S 935 >UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB1_LEPTE Length = 1142 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 254/570 (44%), Gaps = 23/570 (4%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD---LFFEKVIFEIRDNKLQMEL 241 + D +I ++ K L+ L I L + + ++ + ++ Sbjct: 577 TYFRDISKICSAQITQQLKQ--KSFLKLLLINPRLISQNNLLVLNRAVNFLKKIQFNLKD 634 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 P + +F+I + + I K + Sbjct: 635 SPNL--NDYQNFEINKLKAHIFKCQIKTQNNLTCCKYIYIKTKFNYINLPIKQFFFTKRF 692 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRI---ETLFTNDLDHGPYISETLRVDPTND 358 + L+ + +L L + L + L N + P + + + + Sbjct: 693 LITEQKLLLGGKFINSNLALTSLLKLHKFSEVVSNSFLIYNANNPNPNPTSIMSMIRPVN 752 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + ++ R L + + + + L ++ + + Sbjct: 753 KSEIYRQLNRRFVRSRLQLNVLKSELTNSHSQLIKANNDPIDRELSI-QILKQDVQKSNP 811 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDID---HLGNRRIRSVGEMAENQFRVGLVRVERAV 475 K I + + + D + L +I ++ + + +++ Sbjct: 812 FNKKG--IYNQRFINKKFLDTSQFIDQELLHFLKTHKIFLDRQLTSLKTKQQNEKLKFIK 869 Query: 476 KERL-SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 ++L + + Q++I I+ A++E FG + LSQFMDQ NPLSEITHKRRIS++G Sbjct: 870 WKKLRNFKNALKNPIQNLITTNAINGALQELFGLNPLSQFMDQINPLSEITHKRRISSMG 929 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGG+ R+ A +VR +HPTHYGR+CPIETPEG N GL+NS ++YA+ N YGFLETP+ KV Sbjct: 930 PGGVNRDNASMDVRSIHPTHYGRICPIETPEGHNAGLVNSPTIYARINNYGFLETPFFKV 989 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV------EDLVTCRSKGESSLFSRD 648 G + + YL+A +E + ++ + + E E V R + + Sbjct: 990 NSGQIQAKAFYLNAQKEQKFKVSPPDLSCSELQFLPLGPTKIESEVPMRKDFKFQRMAAT 1049 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 Q++++ +S Q++SV SLIPFLEHDDANRALMG+NMQRQAVP L A++P+VGTG+E V Sbjct: 1050 QIEFIGISPLQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLIAERPVVGTGLEGRV 1109 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 DS K+ GV+ YV +++++ Sbjct: 1110 IADSSYIMQTKQSGVISYVSNEQVIVQTFH 1139 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 77/435 (17%), Positives = 158/435 (36%), Gaps = 47/435 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VS 72 F + + L + L+ IQ SF + + GL+ + I++ + N +L + + Sbjct: 3 FSVKNKNLLIQNLVEIQQQSFNELLC------VGLKRQLLQLNFIENKTRNIKLIFHAKN 56 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y+ P +E ++ T+++ L + + I V +G +P MT Sbjct: 57 YKFILPEITPKEAVLKSKTFASALFIPVEY---------RAKNSIGLYWVLLGHLPFMTK 107 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG----------KVLYNARIIPYRGS 182 G F+ING RV+++Q+ RSPG+++ + + S ++ + IIP RG+ Sbjct: 108 RGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSHTSPVFYSDIIPNRGT 167 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD-------- 234 WL E D K N+++R+ R K+P + L+AL Y I L + + Sbjct: 168 WLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSRKFLNCDYLLNTDHPA 227 Query: 235 ------NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 K+++E+ +++ A ++ + ++ I ++ KD + Sbjct: 228 DSNSALKKIKVEIEQQKVLKLAALEALDDDDPDIAKQLDYIEKTTTPEMGKDFLFQSFFN 287 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 + + +++ I + L+ + ++ KR T+ +D Sbjct: 288 PASYDLSPIGRFQLNKKLNLSIPSDYTVLTEFDIYFATKELIKRATTMSNSDDIDHLQTR 347 Query: 349 ------ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 E L + I + S ++ S V Sbjct: 348 RIRSCGELLEIQLGEGIERLQKTIIDKINNTNLKKFAKHSSTYKRGTSSSIYRQDRQVIN 407 Query: 403 MKFNRSLLREEIEGS 417 N L+ + Sbjct: 408 TDKNSKFLKNNLPTK 422 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 113/358 (31%), Gaps = 39/358 (10%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 ++ + +F + + LP A+ + LF L L+ Sbjct: 41 IENKTRNIKLIFHAKNYKFILPEITPKEAVLKSKTFASALFIPVEYRAKNSIGLYWVLLG 100 Query: 244 ER-LRGETASFDIEANGKVYVEKGRRITARHIR------------QLEKDDVKLIEVPVE 290 + F I +V + + R + + + + Sbjct: 101 HLPFMTKRGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSHTSPVFYSD 160 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 I + + + + ++ L G+ Sbjct: 161 IIPNRGTWLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSRKFLNCDYL 220 Query: 351 LRVDPTNDRLSALVEI------YRMMRP--------------------GEPPTREAAESL 384 L D D SAL +I ++++ + T E + Sbjct: 221 LNTDHPADSNSALKKIKVEIEQQKVLKLAALEALDDDDPDIAKQLDYIEKTTTPEMGKDF 280 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 FF+ YDLS +GR + N+ L +L++ DI K+LI DD Sbjct: 281 LFQSFFNPASYDLSPIGRFQLNKKLNLSIPSDYTVLTEFDIYFATKELIKRATTMSNSDD 340 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAV 502 IDHL RRIRS GE+ E Q G+ R+++ + ++++ +L + S+++ Sbjct: 341 IDHLQTRRIRSCGELLEIQLGEGIERLQKTIIDKINNTNLKKFAKHSSTYKRGTSSSI 398 >UniRef50_Q1L6B6 RNA polymerase II second largest subunit (Fragment) n=26 Tax=Spermatophyta RepID=Q1L6B6_9CARY Length = 667 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 91/640 (14%), Positives = 191/640 (29%), Gaps = 99/640 (15%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 K+P + DL + + + L + + + VY Sbjct: 52 KVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ----EKMSTNHVY 107 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD----------YIDESTGELICA 312 V K R+ + + P + +++++ YI + + Sbjct: 108 VFKKRQPNKYAYVAEVRSMAENQNRPPSTMFVRMLSRAGAKGGGSSGQYIKATLPYIRTE 167 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT-NDRLSALVEIYRMMR 371 + + L ++ +D + +L ++ AL I + Sbjct: 168 IPIIIIFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA 227 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 TRE + + E L VG E ++ + Sbjct: 228 TVG-VTREKRIKYAKEILQKEM---LPHVG-----------VGEYCETKKAYYFGYIIHR 272 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMP 489 L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + + Sbjct: 273 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDQGKDVNL 332 Query: 490 QDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISALGPGG 537 Q I AK I++ +K + SQ +++ S ++H RR+++ Sbjct: 333 QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS----P 388 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN--------------- 582 + RE + R +H + +G +CP ETPEG GL+ +L++ Sbjct: 389 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 448 Query: 583 --------------------EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 G P + + T+ +S N Sbjct: 449 STENFEACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 508 Query: 623 LDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 V+ L R + + + V + + ++ + L + R Sbjct: 509 WVGIHRDPDLLVKTLRQLRRRVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 567 Query: 679 ALMGAN----MQRQAVPTLRADKPLVGTGMERAVAVDS---GVTAVAKRGGVVQYVDASR 731 L+ +Q++ P LV G + + + ++ + ++ Sbjct: 568 LLIKKKDIRALQQRESPDEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLITARLNPEE 627 Query: 732 IVIKVN-EDEMYPGEA---GIDIYNLTKYTRSNQNTCINQ 767 + E++P I + +S +NT + Sbjct: 628 AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 667 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 110/346 (31%), Gaps = 59/346 (17%) Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK-EQEVYMGEIPLMTDN------- 133 + ++R +TYSAPL V + + ++ V + + +V++G++P+M + Sbjct: 7 PKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSSYCTLYQ 66 Query: 134 -----------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 G F+ING+E+V+++Q S + K K Y A + Sbjct: 67 NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF---KKRQPNKYAYVAEV 123 Query: 177 IPYRG--------------SWLDFEFDPKDNLFVRIDR---RRKLPATIILRALNY-TTE 218 S + +++ R ++P II RAL + + Sbjct: 124 RSMAENQNRPPSTMFVRMLSRAGAKGGGSSGQYIKATLPYIRTEIPIIIIFRALGFVADK 183 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 IL+ L+ L +F I+ G+R + + + Sbjct: 184 DILEHICYDFSDTQMMELLRPSLEE--------AFVIQNQQVALDYIGKRGATVGVTREK 235 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + E + V + + + LL L + + Sbjct: 236 RIKYAKEILQKEMLPHVGVGEYCETKKA----YYFGYIIHRLLLCALGRRPEDDRDHYGN 291 Query: 339 NDLDH-GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 LD GP + R+ + + + G+ + A Sbjct: 292 KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDQGKDVNLQFAIK 337 >UniRef50_Q4ZJA8 DNA-directed RNA polymerase n=3 Tax=Lymphocystivirus RepID=Q4ZJA8_FLDV Length = 1018 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 83/418 (19%), Positives = 141/418 (33%), Gaps = 66/418 (15%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 T + + + A D S + L+ L + VL + K + P Sbjct: 656 ITCYKTFVEIEKYKSKHDSELIAHPDFSIRNRDLDYSLLGKTG-VLDPKLGKKNKKYRCP 714 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHE-FEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 L ++L + + K + + D +I+KV Sbjct: 715 LCDALWFPAGTVLVGKVAKKLIDGVIVYRDVSLAVKADEEGYLDELLDHYTIETGRIIKV 774 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L + + GDK A KG I EDMP+ G D+++NP Sbjct: 775 KLRSSKIPEIGDKFASFTAQKGTCGMIYRQEDMPFTAEGVVPDLIINP------------ 822 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 H + I + Sbjct: 823 ---HAFPSRMTINYILQMCYGLAACYT--------------------------------- 846 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 G F E + L L + + +Y G TG++F + +G Sbjct: 847 ------GKIYDATPFKRYNLTEELKELALELKLETWETTMYCGLTGKKFSSKIFIGPCDY 900 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L HLV +K+H+R +G +T QP+ G++++GG + GEME W ++GA+ L+E L Sbjct: 901 QRLRHLVTNKIHSRISGPIDNLTHQPVAGRSRYGGIKVGEMEQWCKLSHGASAALKESLF 960 Query: 1293 VKSDDVN-GRTKMYKNI------VDGNHQMEPGM---PESFNVLLKEIRSLGINIELE 1340 SD K K I +E M P + +L +E+ ++GI+++ E Sbjct: 961 DMSDKYTIPVCKTCKTISDDFEYCRKCDDIEIEMKNCPYTSKLLFQELMAIGIHVQFE 1018 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 98/629 (15%), Positives = 193/629 (30%), Gaps = 100/629 (15%) Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + + + S + ++ +L + G+ + D D L +R+ + G + E F Sbjct: 256 LKKEIFNHLEDHSPFNVACHLGYMINRLAAVTAGEAALTDKDDLAYKRVDTSGTLIEFLF 315 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPISAAVKEFFGSSQL------------ 511 + + R +K L + L P +++ N I+ + F + Sbjct: 316 KGLFKQYVRLIKNSLEI--LKNPDPINIVKNVNVITNGLNLCFATGNWSVKKTGPPSYMR 373 Query: 512 ---SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQ + +N S ++H RR+ + + F++R +H +HYG +CP ETPEG Sbjct: 374 VGVSQVLCNHNYGSRLSHLRRL----MHAVGFKGKNFKIRRLHASHYGFICPYETPEGER 429 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 +G++ + ++ ++ G+ ++I L Y+ + + G Sbjct: 430 VGVVLNTALSTAFSQ-------------GIPKNQIKPL----MEPYIKNSGSFKVILNGE 472 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 V + + V ++V P + ++ R Sbjct: 473 IVGYVDDPDQTIKF---------LKSVLPEEVSVFCYRFTP-----KIKECHVFSDKGRF 518 Query: 689 AVPTLRADKPLVG----TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 P L K + + + + T V+ + + + + M Sbjct: 519 LRPVLVESKIIRVCAQEIHHIKYKELPAYSTMTDVMASVIPFYNHAPSPRIAYQSNMGKQ 578 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 GI R + P +L + + G VA Sbjct: 579 AVGITTLT-GGRDRYDPTFYSLDYPQKALARTICYDRY-------KFDIMCHGAVPIVAV 630 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRDTKLGPEEI---TADIPNVGEA 860 +GYN EDS+++++ + F + +K E I I N + Sbjct: 631 STMDGYNQEDSVVLNKSSIDRGLFNITCYKTFVEIEKYKSKHDSELIAHPDFSIRN-RDL 689 Query: 861 ALSKLDESGI--VYIGA-------------EVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 S L ++G+ +G G +LVGKV K Sbjct: 690 DYSLLGKTGVLDPKLGKKNKKYRCPLCDALWFPAGTVLVGKVAKK--------------- 734 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 + +D SL V G + ++ + + + K S Q Sbjct: 735 LIDGVIVYRDVSLAVKADEEGYLDELLDHYTIETGRIIKVKLRSSKIPEIGDKFASFTAQ 794 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 G+ R + L P Sbjct: 795 KGTCGMIYRQEDMPFTAEGVVPDLIINPH 823 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 46/381 (12%), Positives = 118/381 (30%), Gaps = 49/381 (12%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQ 83 + L + ++S+ +F+ D + + + N +++ + + +P Sbjct: 2 LKRLTAHHIESYDRFLFFDIPAVVARDKIIQ--------TTNFVIEFKNIQYNKPKITPL 53 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE----------IPLMTDN 133 E + + +TY+ + ++ ++ + ++ + P Sbjct: 54 EAKQKDLTYAISINYEIDFNGKSTILEIFSLPLMLRSKLCLTNNVAHQTTFELCPN-DPG 112 Query: 134 GTFVINGTERVIVSQLHRSPGV----FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 G F++ G ERV++ + V + D S ++ +I R D Sbjct: 113 GYFIVKGKERVLIPHIRPRYNVPMVKYEDGFYLCEFRSASETGSSTLIQAR-------TD 165 Query: 190 PKDNLFVRIDR-RRKLPATIILRALNYTTEQILDL--FFEKVIFEIRDNKLQMELVPERL 246 K L + ++ +PA + + L + E+ L +K + E + L Sbjct: 166 GKIVLEFSLPYIKQFVPAGTVFKTLGISFEEAFLLCGLGQKNKHTLNCKSGYYEALSTIL 225 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 G + + V V+ ++ L K + + D S Sbjct: 226 YGHY-TGNKTVTDYVPVDVKCDNKESYVESLLKKE---------------IFNHLEDHSP 269 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 + C ++ ++ + L +D + E L + + Sbjct: 270 FNVACHLGYMINRLAAVTAGEAALTDKDDLAYKRVDTSGTLIEFLFKGLFKQYVRLIKNS 329 Query: 367 YRMMRPGEPPTREAAESLFEN 387 +++ +P ++ N Sbjct: 330 LEILKNPDPINIVKNVNVITN 350 >UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=Pseudomonas aeruginosa RepID=Q5ZH00_PSEAE Length = 364 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 129/176 (73%), Positives = 154/176 (87%) Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + LMPQD+INAKP++AA+KEFFGSSQLSQFMDQNNPLSEITHKRR+SALGPGGLTRERAG Sbjct: 1 EGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAG 60 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 FEVRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V D +VTDEI Sbjct: 61 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIV 120 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 +LSAIEE ++VIAQA++ L+E+G V++LV R E ++ + + V MDVS +QV Sbjct: 121 FLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQV 176 >UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax=Theileria parva RepID=RPOB_THEPA Length = 1005 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 120/732 (16%), Positives = 256/732 (34%), Gaps = 37/732 (5%) Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 +K + +I ++ I++S ++ N L L +L + + Sbjct: 87 QIKFNNLKSRFINYNIINIPKINQSGDIIL---NGYLRLPILYLQLATNNISYIFNEKIT 143 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 + I + + V I + + S ++ V Sbjct: 144 RTYFIKIKNNIYLYIYLYDDFITVYINSYKIKNDLFSMYNNVSFKNKYINFSKIDNVIYV 203 Query: 401 GRMKFNRSLLR------EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 +K N DI+ ++ K +++ K + ++L N+ Sbjct: 204 MNLKNNNIKYHIFDKTININNFVNNTMFMDILSIVNKFLNLNLKKKFIQSSNNLINKSTN 263 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 SV + + ++V D L+ + I KE + + + Sbjct: 264 SV-------LKTIFRQFTKSVTIFDIEKYCDKLLYKKKIFRSFNIVLFKEHLLVNPVIHY 316 Query: 515 MDQNNPLSEITHKRRISALGPGGLT--RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 DQ N LS +T+K +I+ G + + + +R + + G + + TP+G GLI Sbjct: 317 TDQLNVLSYLTNKFKINIFGYSNSSNDKFKVSTNLRKIQSDYIGFINIVNTPDGDTCGLI 376 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN-SNLDEEGHFVE 631 + L+ +++ + + + + Y + N N+ + F Sbjct: 377 SKLANNTILDKFKL----KLINCNNEYFENFTKIDITSKNLYNMTSNNFINIKKNSTFKV 432 Query: 632 DLVTCRSKGESSLFSRD-QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + E L + D +++ +S+ +IPFL ++D R LMG+ M QA+ Sbjct: 433 KQIEVFKNNEFKLINFDKNKTNKNLNVFNTLSITELIIPFLFNNDPCRGLMGSKMHTQAL 492 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 P + + P V T + + G++ V+ +I++ +++ Sbjct: 493 PLIYNEHPYVMTKYNHMNGLLFNKCITSLCEGIIVSVNNYKIIVMDDKNRYLH------- 545 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L + + N+ ++ P V +GE + G +LA E LG N + + +NGY Sbjct: 546 YYLYPFNVLDYNSFVSYKPIVWVGEKINIGKILALPSDLKHSEFTLGVNNLLNYSFYNGY 605 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT-ADIPNVGEAALSKLDESG 869 ED+I++++ ++ ED T+I KL E+T + ++E G Sbjct: 606 EHEDAIVINKNLIIEDILTSISFDVYEEYLSINKLDYVELTLRHLLEYNRYNRYLINEVG 665 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD--VKDSSLRVPNGVSGT 927 + + GDIL K+ + + + + ++ V L + G G Sbjct: 666 VSSNQDYMLFGDILSTKIRYELSLSKNKKFFKVFKLIFKENKKLIVYTKPLTIKRGGEGR 725 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 +I ++ G K ++ + +I + ++ GV ++ Sbjct: 726 LIKYEIL---GYSKFRQLDAMYPEINVSYLTLRFFIFKIDRINIGDKLCGRHGNKGVVSK 782 Query: 988 KLDKLPRDRWLE 999 +D + Sbjct: 783 IVDNIDLPYTFR 794 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 113/577 (19%), Positives = 197/577 (34%), Gaps = 87/577 (15%) Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 G L L N M YN + +L ++ + + + + D K Sbjct: 484 GSKMHTQALPLIYNEHPYVM--TKYNHMNGLLFNKCITSLCEGIIVSVNNYKIIVMDDKN 541 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 NV + S + IV++G ++ +GK+ E L Sbjct: 542 RYLHYYLYPFNVLDYN-SFVSYKPIVWVGEKIN-----IGKILALPSDLKHSEFTLGVNN 595 Query: 906 FGEKASDVKDSSLRVPNGVSGTVID-----VQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 + VI+ + T + + L I ++ + Sbjct: 596 LLNYSF------YNGYEHEDAIVINKNLIIEDILTSISFDVYEEYLSINKLDYVELTLRH 649 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL-------------GLTDEEK 1007 E L + + + + L L +++ Sbjct: 650 LLEYNRYNRYLINEVGVSSNQDYMLFGDILSTKIRYELSLSKNKKFFKVFKLIFKENKKL 709 Query: 1008 QNQLEQLAEQYDELKHEFEKKLE--AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 + L + + ++ +K R++ ++ ++ RI GDK Sbjct: 710 IVYTKPLTIKRGGEGRLIKYEILGYSKFRQLDAMYPEINVSYLTLRFFIFKIDRINIGDK 769 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 + GRHGNKGV+SKI D+PY G + +P+G +R+N+GQ LE G Sbjct: 770 LCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGALARINLGQFLEGSCGYFGLNFN 829 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 +I A + +++ ++ Sbjct: 830 CRIKAPINLYNYHLYSNMYLKNIFNSLNVYNNSY-------------------------- 863 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 + S + L D +TG Q + + Y LKL H K Sbjct: 864 ------------------INFSIEKYLRDFKTGYQLKNFNLMLMPYFLKLMHTSKSKFQY 905 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 R+ G YS +TQQP+ GK G Q+FGEMEVWALE++G+AYT++E+ +K++ + + Sbjct: 906 RTVGKYSSLTQQPVKGKRVNGSQKFGEMEVWALESHGSAYTIRELGYIKTNVKYFKKFEH 965 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K E+F VL E++++ INI D Sbjct: 966 KGYKGS---------ETFKVLTLELKNVLININRVDN 993 >UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular organisms RepID=B2X2B9_CHLMO Length = 1661 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 92/208 (44%), Positives = 130/208 (62%) Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 ++I + + Y+L KY RSNQ+TC+ P V G+ VE GD+LAD ++ Sbjct: 242 TKIKVNSYKIIENCDNYLSMEYSLEKYHRSNQDTCLVHKPAVVEGQWVESGDLLADCSAS 301 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 GELALGQN+ + +MPW GYNFED+IL+SER+V +D +T+IHI+ ++KLG ++ Sbjct: 302 VGGELALGQNILIGYMPWEGYNFEDAILISERLVYDDLYTSIHIERYEVNIEESKLGMDK 361 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 IT +IP V +L L+ GI+ IG+ V GDILVGKVTP + + +KLL I + Sbjct: 362 ITREIPEVDSDSLKNLNSLGIIKIGSWVQEGDILVGKVTPVNKKNQSNYQKLLYLILDKT 421 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 S V+DSSLR P G+ VI +QVF + Sbjct: 422 VSPVRDSSLRAPKGIKAKVIGLQVFKNN 449 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 97/358 (27%), Positives = 151/358 (42%), Gaps = 51/358 (14%) Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 KL R+ KD +L + G+ + L ++ ++ Sbjct: 571 HNKLRRSEVILSEKTEKDKNLLY-------CKAPVALNKVGLAPSNKRLTWKKADNQKLN 623 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 + + + I + ++ + + ++ L + A Q Sbjct: 624 TEETNSINISINTKNNYHKSEGYINDPLTDGSLINETKKSHRSASVLDKGAFSLGEKALQ 683 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + K + + + + ++VYLA +RR+Q GDKMAGRHGNKG+IS Sbjct: 684 RSSTGQNLKTKKTGMQALYLK----STSSVSSIQVYLAERRRVQVGDKMAGRHGNKGIIS 739 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 +I PIED+P+ +GTP+D+VLNPLGVPSRMN+GQI E LG+A K +G+ + Sbjct: 740 EILPIEDLPFLPDGTPLDMVLNPLGVPSRMNVGQIYECLLGLAGKHLGENYKVFPFDE-- 797 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 GA+ + S + V Sbjct: 798 ------------IYGAEASRSFVYSKLYNASVKTGKT----------------------- 822 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 L + G+I LYDGRTGE F + +TVGY Y+L+L H+VDDKMH T + ++T Sbjct: 823 --WLFNPNLPGKIGLYDGRTGESFHQAITVGYAYILRLVHMVDDKMHCL-TPDHDVLT 877 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 1/95 (1%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 +RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLT+KSDD++GR + Sbjct: 1563 SRSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGYGAAFTLLEMLTIKSDDMSGRMTL 1622 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + N++ G PESF VL+ E+++L ++I L Sbjct: 1623 WSNLILNKEIS-IGTPESFKVLICELQALCLDIGL 1656 >UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RIB2_ARCPR Length = 511 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 89/418 (21%), Positives = 167/418 (39%), Gaps = 38/418 (9%) Query: 204 LPATIILRALNYTTEQILDLF--FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 LP + + N + I + F + D + ++ L E F I + Sbjct: 113 LPVMVKSKICNLHPDNIDEALKAFRRTDNIPDDYEKKLCLAGEDPLDPGGYFIINGTERA 172 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA------ANM 315 V + + + E+ + EV + + E T I Sbjct: 173 LVTLEDLAPNKILLEKEEKYGEEFEVAKCFSQKAGYRALVVVERTRGNILEVTFPQLPKP 232 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + L+ L K I + + + + ++ E L V + A+ I R + PG Sbjct: 233 IQFVVLMRALGVESDKEIVEMVSTNPEIMKFMLENLEVAEVETQEEAIDYIGRRVAPG-- 290 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 ++ + + D++ L +G R + + + + ++ Sbjct: 291 ---QSRDYRIQRANQVLDQHFLPHLGTEPEARR-----------AKAFFLARMAEMVFEL 336 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD-------TLM 488 G DD DH N+R++ G++ E FRV L+R+ + VK +L T + Sbjct: 337 HLGLRREDDKDHYANKRLKLAGDLIEEIFRVALLRLIKDVKYQLERAKARGRPMKMTTAV 396 Query: 489 PQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 D++ + + + G + +SQ +D++N +S ++H RR+ + L+R + FE Sbjct: 397 RADVLTDRIMHPMATGNWVGGRTGVSQLIDRHNYMSILSHLRRVVS----PLSRSQPHFE 452 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 RD+HPT +GR+CP ETPEGPN GL+ + + YA+ + G E +K + + I Sbjct: 453 ARDLHPTQWGRLCPNETPEGPNCGLVKNFAQYAEVSV-GCDEENVKKTLFSLGVEPIR 509 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 85/282 (30%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD----- 81 L+ Q+DS+ +F+++ GL+ I+ N+ ++ +G+P+ Sbjct: 17 LVRHQIDSYNRFLDE------GLQRVIDEQRIIELDIPNTYVKLGRAWVGKPIVKEADGI 70 Query: 82 -----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT----- 131 E ++R +TY+AP+ V+ ++V K+++ + V +G +P+M Sbjct: 71 RRLLLPAEARLRNLTYAAPIYVEAQVV--------DEGKELEWETVEIGMLPVMVKSKIC 122 Query: 132 -------------------------------------DNGTFVINGTERVIVSQLHRSPG 154 G F+INGTER +V+ +P Sbjct: 123 NLHPDNIDEALKAFRRTDNIPDDYEKKLCLAGEDPLDPGGYFIINGTERALVTLEDLAPN 182 Query: 155 VFFDSDKGK--------THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK-LP 205 + K S K Y A ++ R + L V + K + Sbjct: 183 KILLEKEEKYGEEFEVAKCFSQKAGYRALVVVER--------TRGNILEVTFPQLPKPIQ 234 Query: 206 ATIILRALNY-TTEQILDLFF-EKVIFEIRDNKLQMELVPER 245 +++RAL + ++I+++ I + L++ V + Sbjct: 235 FVVLMRALGVESDKEIVEMVSTNPEIMKFMLENLEVAEVETQ 276 >UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BKT9_9CRYP Length = 1129 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 84/431 (19%), Positives = 146/431 (33%), Gaps = 85/431 (19%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + +E+ + + K L ++ + VL G + + Sbjct: 762 MEDAMIINKSSIERGFASSNVYNCFDLDIKPSLLKKSNFFKKKKTE--ENVLKTGDLLKK 819 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 +P++ W + +E D++K + + K + Sbjct: 820 GAPLVPKESWYSIHKKNEAFFCYNSSEKAIIDQIKIFSDIENNQNIEKNS---------- 869 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 + + +RR GDK A RHG KGV S + D+P+ + G +I+ NP G P Sbjct: 870 ----IKIRSRRRPLVGDKFASRHGQKGVFSYLYSSIDLPFTDLGMNPEIIFNPHGFP--- 922 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 + IG + +M+ + +GA D + F Sbjct: 923 ------------SRMTIGVILESMIGK----------------IGALDGVFHDTTPFRFG 954 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 + + A E L+ G Y G +GE F V + Sbjct: 955 Q-------------------NRAAIYHFGEKLRKSGFQFYGNEIFYSGYSGEPFSIDVFL 995 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G + +L H+V DK + G + +T+QP+ GK G RFGEME A+ G + L Sbjct: 996 GIVNYQRLRHMVLDKYQISNQGPKNSLTRQPIKGKKIGGSIRFGEMERDAILGQGCVFLL 1055 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQM-------------------EPGMPESFNVLLK 1328 + L SD R + K + + + +P LL Sbjct: 1056 HDRLQTSSDLHASRLNIEKGSFFDSEKPTSHTFFYKKKFFEKKVINRKILLPYVIKFLLI 1115 Query: 1329 EIRSLGINIEL 1339 E+ S+ + I Sbjct: 1116 ELASINLKINF 1126 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 98/792 (12%), Positives = 220/792 (27%), Gaps = 112/792 (14%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I K+ + + T L Sbjct: 145 GYFIINGMEKMIRLLIVPKKNISFTLSRLTNTSRGNLCTTLSCSFRSVDRLQTSRTLHLH 204 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS---ALVEIY 367 N + ++ + + I + + I E+L + D+ + I Sbjct: 205 YLTNGSIHARIIVQKKEFFIPVIMLIKSLMPISDKKIFESLTKTFSKDKFYRIRIMAMIK 264 Query: 368 RMMRPGEPPTREAAESLFENLFFSE---DRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 + T+ + +F + + D ++G +L E Sbjct: 265 DAHETCDLKTQISVLEFLGKVFKTSLQTNTIDAKSIGEKFLFNHILIHLGEDKEA-KVKL 323 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL----------VRVERA 474 ++ ++ KL+ ++ D+ D L ++ G + F+ E+ Sbjct: 324 LLFMINKLLSVQKKISIEDNPDSLSSQEFLLPGHLIMVYFKEKFESSLNFIFSQKEFEQN 383 Query: 475 VKERLSLGDLDTLMP------------------QDMINAKPISAAVKEFFGSSQLSQFMD 516 + + Q + +S E +S LS ++ Sbjct: 384 ISNNFNKEGKSFQKQFCTDFLSKAFMTTGKGLAQIISTGSYVSKFNHELSQTSGLSVSIE 443 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + N +++ R ++ G E R + P +G +CP+ TP+G G++N + Sbjct: 444 RINFGRFLSYFR---SIHRGKFFFELKNTSGRKLLPQSWGFLCPVHTPDGALCGILNHTA 500 Query: 577 VYAQTNEYGFLETPYRK------VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 + L + K + + ++ S ++ FV Sbjct: 501 SSVLVSLSNPLNCDFFKKYFFRYLPKNFLKEKKISSSIFMIDGKILGF--IPKFFFKSFV 558 Query: 631 EDLVTCRS--------KGESSLFSRDQVDYMDVSTQQVVSVGASLIP------------- 669 + L T + E SR S + G L P Sbjct: 559 DKLRTEKVSVLGKISLGCEIFSISRFNRKCSFPSCILLSQDGRPLRPVKWFSFKKKKKFS 618 Query: 670 ---------FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 FL + + + L M + ++ Sbjct: 619 VFKKKNEKDFLNYCSEIEIIGTLEQCFLNIDNLDYQSSFFTKNMVGTHSEIEASNILSVI 678 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G + D ++ + + +M G Y + R + + P V P+ R Sbjct: 679 AGATPFSDLNQSPRNMYQCQMSKQSVGTPFYTF--WRRDDIKSFFLLNPQV----PICRN 732 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 ++ DG D G N V+ + + G++ ED++++++ ++ ++ Sbjct: 733 KIIQDGLQMDA--FPNGFNSVVSVITYTGFDMEDAMIINKSSIERGFASSNVYNCFDLDI 790 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + + L E ++ G + G LV P+E Sbjct: 791 KPSLLKKSNFFKKKK----------TEENVLKTGDLLKKGAPLV------------PKES 828 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 +A +SS + +++F+ ++ I+ ++ Sbjct: 829 WYSIHKKNEAFFCYNSS------EKAIIDQIKIFSDIENNQNIEKNSIKIRSRRRPLVGD 882 Query: 961 SEELQILEAGLF 972 + + G+F Sbjct: 883 KFASRHGQKGVF 894 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.119 0.307 Lambda K H 0.267 0.0364 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,722,677,978 Number of Sequences: 3077464 Number of extensions: 293113650 Number of successful extensions: 805773 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 897 Number of HSP's successfully gapped in prelim test: 657 Number of HSP's that attempted gapping in prelim test: 796543 Number of HSP's gapped (non-prelim): 5090 length of query: 1342 length of database: 1,040,396,356 effective HSP length: 141 effective length of query: 1201 effective length of database: 606,473,932 effective search space: 728375192332 effective search space used: 728375192332 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 99 (42.9 bits)