Phyre 2 Results for P00452

Email | l.a.kelley@imperial.ac.uk
Description | P00452
Date | Thu Jan 5 10:56:38 GMT 2012
Unique Job ID | d37d29b94415048c

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3r1rB_ |
|  | 100.0 | 100 | PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli
2 | c3hnfA_ |
|  | 100.0 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp
3 | c2wghA_ |
|  | 100.0 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg.
4 | c1pemA_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium
5 | c2cvuA_ |
|  | 100.0 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i
6 | d1rlra2 |
|  | 100.0 | 99 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain
7 | c1xjeA_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex
8 | d1peqa2 |
|  | 100.0 | 25 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain
9 | d1l1la_ |
|  | 100.0 | 15 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:B12-dependent (class II) ribonucleotide reductase
10 | d1rlra1 |
|  | 100.0 | 100 | Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain
11 | d1peqa1 |
|  | 100.0 | 14 | Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain
12 | d1hk8a_ |
|  | 95.3 | 13 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit
13 | c1hk8A_ |
|  | 95.3 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp
14 | d1h16a_ |
|  | 86.4 | 19 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
15 | d1qhma_ |
|  | 43.8 | 17 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
16 | c2f3oB_ |
|  | 43.3 | 19 | PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus
17 | d1r9da_ |
|  | 42.8 | 16 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
18 | d1h3ob_ |
|  | 34.1 | 13 | Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs
19 | d2okqa1 |
|  | 33.0 | 8 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YbaA-like
20 | d1vjfa_ |
|  | 31.5 | 18 | Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain
21 | c2okqB_ |
| not modelled | 22.8 | 8 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ybaa; PDBTitle: crystal structure of unknown conserved ybaa protein from2 shigella flexneri
22 | c2bjgB_ |
| not modelled | 22.6 | 12 | PDB header:hydrolase Chain: B: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of conjugated bile acid hydrolase from2 clostridium perfringens in complex with reaction products3 taurine and deoxycholate
23 | c2hezB_ |
| not modelled | 20.8 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:bile salt hydrolase; PDBTitle: bifidobacterium longum bile salt hydrolase
24 | d2pvaa_ |
| not modelled | 19.7 | 12 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Penicillin V acylase
25 | d1j09a2 |
| not modelled | 19.2 | 14 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
26 | d2ccqa1 |
| not modelled | 18.5 | 16 | Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain
27 | c1pgjA_ |
| not modelled | 14.7 | 39 | PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase; PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei
28 | c3pg6D_ |
| not modelled | 14.5 | 15 | PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like
29 | d2b4va2 |
| not modelled | 13.7 | 44 | Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:RNA editing terminal uridyl transferase 2, RET2, catalytic domain
30 | c2iz1C_ |
| not modelled | 13.7 | 28 | PDB header:oxidoreductase Chain: C: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating; PDBTitle: 6pdh complexed with pex inhibitor synchrotron data
31 | d1vmha_ |
| not modelled | 12.1 | 13 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
32 | d1vmfa_ |
| not modelled | 12.1 | 16 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
33 | d1ywsa1 |
| not modelled | 12.1 | 21 | Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger
34 | d1mska_ |
| not modelled | 12.1 | 20 | Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Methionine synthase SAM-binding domain
35 | c2p4qA_ |
| not modelled | 12.0 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating 1; PDBTitle: crystal structure analysis of gnd1 in saccharomyces cerevisiae
36 | c2jr7A_ |
| not modelled | 11.6 | 21 | PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1
37 | d1vmja_ |
| not modelled | 11.5 | 26 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
38 | d1wgea1 |
| not modelled | 11.2 | 21 | Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger
39 | d1avca2 |
| not modelled | 10.9 | 14 | Fold:Annexin Superfamily:Annexin Family:Annexin
40 | d1vkia_ |
| not modelled | 10.5 | 13 | Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain
41 | c2p6hB_ |
| not modelled | 10.3 | 26 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of hypothetical protein ape1520 from aeropyrum2 pernix k1
42 | c2xrgA_ |
| not modelled | 10.3 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor
43 | c2oqcB_ |
| not modelled | 10.3 | 10 | PDB header:hydrolase Chain: B: PDB Molecule:penicillin v acylase; PDBTitle: crystal structure of penicillin v acylase from bacillus subtilis
44 | d1xn7a_ |
| not modelled | 10.3 | 64 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG
45 | d2d0ob1 |
| not modelled | 9.6 | 10 | Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit
46 | c3rcqA_ |
| not modelled | 9.1 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase; PDBTitle: crystal structure of human aspartate beta-hydroxylase isoform a
47 | c2qlwA_ |
| not modelled | 8.9 | 20 | PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum
48 | c2qlxA_ |
| not modelled | 8.9 | 20 | PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose
49 | d1vpha_ |
| not modelled | 8.7 | 14 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
50 | c2p6cB_ |
| not modelled | 8.5 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5.
51 | d1wiga2 |
| not modelled | 8.3 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
52 | d2g5ca2 |
| not modelled | 8.3 | 33 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
53 | c3dzbA_ |
| not modelled | 8.2 | 26 | PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus
54 | c2xr9A_ |
| not modelled | 7.8 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2)
55 | d1f6da_ |
| not modelled | 7.7 | 18 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase
56 | d1x8da1 |
| not modelled | 7.5 | 40 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like
57 | c1vraA_ |
| not modelled | 7.4 | 10 | PDB header:transferase Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
58 | c2g5cD_ |
| not modelled | 7.4 | 32 | PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus
59 | d1gv2a2 |
| not modelled | 7.4 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain
60 | d1f0ya2 |
| not modelled | 7.3 | 28 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
61 | c2pv7B_ |
| not modelled | 7.2 | 39 | PDB header:isomerase, oxidoreductase Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm) PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution
62 | c3sggA_ |
| not modelled | 7.1 | 7 | PDB header:hydrolase Chain: A: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_2193) from2 bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution
63 | c1idzA_ |
| not modelled | 7.0 | 24 | PDB header:dna-binding protein Chain: A: PDB Molecule:mouse c-myb dna-binding domain repeat 3; PDBTitle: structure of myb transforming protein, nmr, 20 structures
64 | c3kowH_ |
| not modelled | 6.9 | 20 | PDB header:metal binding protein Chain: H: PDB Molecule:d-ornithine aminomutase s component; PDBTitle: crystal structure of ornithine 4,5 aminomutase backsoaked complex
65 | c3ggpA_ |
| not modelled | 6.8 | 32 | PDB header:oxidoreductase Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from a. aeolicus in2 complex with hydroxyphenyl propionate and nad+
66 | d1dm5a_ |
| not modelled | 6.8 | 19 | Fold:Annexin Superfamily:Annexin Family:Annexin
67 | d1at3a_ |
| not modelled | 6.7 | 30 | Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin
68 | d2csba2 |
| not modelled | 6.7 | 21 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain
69 | c2wasA_ |
| not modelled | 6.6 | 25 | PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase; PDBTitle: structure of the fungal type i fas ppt domain
70 | d1wdka3 |
| not modelled | 6.6 | 39 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
71 | d2pgda2 |
| not modelled | 6.6 | 28 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
72 | d1hm6a_ |
| not modelled | 6.5 | 18 | Fold:Annexin Superfamily:Annexin Family:Annexin
73 | d1nbwb_ |
| not modelled | 6.4 | 25 | Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit
74 | c2ep9A_ |
| not modelled | 6.3 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:l-gulonate 3-dehydrogenase; PDBTitle: crystal structure of the rabbit l-gulonate 3-dehydrogenase2 (nadh form)
75 | d1chua3 |
| not modelled | 6.2 | 15 | Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
76 | c3crw1_ |
| not modelled | 6.2 | 16 | PDB header:hydrolase Chain: 1: PDB Molecule:xpd/rad3 related dna helicase; PDBTitle: "xpd_apo"
77 | d1eexb_ |
| not modelled | 6.1 | 22 | Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Diol dehydratase, beta subunit
78 | d1vzva_ |
| not modelled | 5.9 | 30 | Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin
79 | c2c1fA_ |
| not modelled | 5.9 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:bifunctional endo-1,4-beta-xylanase a; PDBTitle: the structure of the family 11 xylanase from neocallimastix2 patriciarum
80 | d1i36a2 |
| not modelled | 5.9 | 28 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
81 | c2h1zA_ |
| not modelled | 5.9 | 50 | PDB header:toxin Chain: A: PDB Molecule:hybrid atracotoxin; PDBTitle: structure of a dual-target spider toxin
82 | d1wo8a1 |
| not modelled | 5.8 | 13 | Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA
83 | d1hrti_ |
| not modelled | 5.8 | 40 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Hirudin-like
84 | c2v4iA_ |
| not modelled | 5.8 | 6 | PDB header:transferase Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain; PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2
85 | d1zeta1 |
| not modelled | 5.8 | 20 | Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain
86 | d3cuma2 |
| not modelled | 5.8 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
87 | c2dwuA_ |
| not modelled | 5.8 | 15 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis
88 | d1mbja_ |
| not modelled | 5.8 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain
89 | c1mbjA_ |
| not modelled | 5.8 | 21 | PDB header:dna binding protein Chain: A: PDB Molecule:myb proto-oncogene protein; PDBTitle: mouse c-myb dna-binding domain repeat 3
90 | c2rpaA_ |
| not modelled | 5.8 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme
91 | d1sfkb_ |
| not modelled | 5.7 | 20 | Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C
92 | d1uoua1 |
| not modelled | 5.7 | 18 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
93 | c3njqB_ |
| not modelled | 5.7 | 30 | PDB header:viral protein/inhibitor Chain: B: PDB Molecule:orf 17; PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor
94 | d1m9ia2 |
| not modelled | 5.7 | 22 | Fold:Annexin Superfamily:Annexin Family:Annexin
95 | c2p6uA_ |
| not modelled | 5.7 | 36 | PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase
96 | c2rafC_ |
| not modelled | 5.7 | 17 | PDB header:oxidoreductase Chain: C: PDB Molecule:putative dinucleotide-binding oxidoreductase; PDBTitle: crystal structure of putative dinucleotide-binding2 oxidoreductase (np_786167.1) from lactobacillus plantarum3 at 1.60 a resolution
97 | d1h4ga_ |
| not modelled | 5.6 | 17 | Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12
98 | d2pv7a2 |
| not modelled | 5.6 | 44 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
99 | c2ysrA_ |
| not modelled | 5.6 | 17 | PDB header:signaling protein Chain: A: PDB Molecule:dep domain-containing protein 1; PDBTitle: solution structure of the dep domain from human dep domain-2 containing protein 1