18/01/2012 10:34:20 : INFO  : Run start: Wed Jan 18 10:34:20 GMT 2012
18/01/2012 10:34:25 : INFO  : Initialised job
18/01/2012 10:34:27 : INFO  : Renaming log file 'phyre2_20120118_103419.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d37d29b94415048c/phyre_20120118_103419.log'
18/01/2012 10:34:28 : INFO  : Initialised job:
Sequence
>batch____
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHE
TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLL
EDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL
FSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT
SSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGG
AATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSD
VPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHC
NTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEE
LAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLT
HKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWE
ALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYE
HLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLT
AYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI

18/01/2012 10:34:29 : INFO  : Checked sequence
18/01/2012 10:34:31 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 10:34:32 : INFO  : PSI-BLAST 3 iterations
18/01/2012 10:37:34 : INFO  : PSI-BLAST 5 iterations
18/01/2012 10:40:36 : INFO  : Finished PSI-BLAST
18/01/2012 10:40:38 : INFO  : Running Buildali to generate a3m file
18/01/2012 10:52:31 : INFO  : Converting to HMM
18/01/2012 10:52:39 : INFO  : Calibrating HMM
18/01/2012 10:53:09 : INFO  : Searching HMM database
18/01/2012 11:10:41 : INFO  : Finished buildali
18/01/2012 11:10:43 : INFO  : Predicting secondary structure
18/01/2012 11:10:52 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 11:10:54 : INFO  : Predicting Disordered regions
18/01/2012 11:10:58 : INFO  : Predicted Disorder (Disopred)
18/01/2012 11:10:59 : INFO  : Running memsat_svm check
18/01/2012 11:15:57 : INFO  : Globular protein
18/01/2012 11:15:58 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd37d29b94415048c'
18/01/2012 11:16:00 : INFO  : Initialising fold library search
18/01/2012 11:16:04 : INFO  : Initialised search input
18/01/2012 11:16:06 : INFO  : Building Ensemble models
18/01/2012 11:16:11 : INFO  : Building hh.c3r1rB_.model.1.pdb
18/01/2012 11:16:27 : INFO  : Building c3r1rB_.1.pdb
18/01/2012 11:16:40 : INFO  : Building c3hnfA_.2.pdb
18/01/2012 11:16:53 : INFO  : Building c2wghA_.3.pdb
18/01/2012 11:17:06 : INFO  : Building c1pemA_.4.pdb
18/01/2012 11:17:20 : INFO  : Building c2cvuA_.5.pdb
18/01/2012 11:17:34 : INFO  : Building d1rlra2.6.pdb
18/01/2012 11:17:50 : INFO  : Building c1xjeA_.7.pdb
18/01/2012 11:18:05 : INFO  : Building d1peqa2.8.pdb
18/01/2012 11:18:20 : INFO  : Building d1l1la_.9.pdb
18/01/2012 11:18:34 : INFO  : Building d1rlra1.10.pdb
18/01/2012 11:18:48 : INFO  : Building d1peqa1.11.pdb
18/01/2012 11:19:02 : INFO  : Building d1hk8a_.12.pdb
18/01/2012 11:19:16 : INFO  : Building c1hk8A_.13.pdb
18/01/2012 11:19:31 : INFO  : Building d1h16a_.14.pdb
18/01/2012 11:19:45 : INFO  : Building d1qhma_.15.pdb
18/01/2012 11:20:02 : INFO  : Building c2f3oB_.16.pdb
18/01/2012 11:20:19 : INFO  : Building d1r9da_.17.pdb
18/01/2012 11:20:36 : INFO  : Building d1h3ob_.18.pdb
18/01/2012 11:20:52 : INFO  : Building d2okqa1.19.pdb
18/01/2012 11:21:07 : INFO  : Building d1vjfa_.20.pdb
18/01/2012 11:21:43 : INFO  : Finished HH model building
18/01/2012 11:21:44 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 11:22:36 : INFO  : html domain output complete ID 'd37d29b94415048c'
18/01/2012 14:42:23 : INFO  : Run end  : Wed Jan 18 14:42:22 GMT 2012
