Phyre 2 Results for P00452

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Email | l.a.kelley@imperial.ac.uk
Description | P00452
Date | Thu Jan 5 10:56:38 GMT 2012
Unique Job ID | d37d29b94415048c

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3r1rB_
Top template information
PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli
Confidence and coverage
Confidence: | 100.0% | Coverage: | 96%
733 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | Q | N | L | L | V | T | K | R | D | G | S | T | E | R | I | N | L | D | K | I | H | R | V | L | D | W | A | A | E | G | L | H | N | V | S | I | S | Q | V | E | L | R | S | H | I | Q | F | Y | D | G | I | K | T | S | D | I | H | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | I | I | K | A | A | A | D | L | I | S | R | D | A | P | D | Y | Q | Y | L | A | A | R | L | A | I | F | H | L | R | K | K | A | Y | G | Q | F | E | P | P | A | L | Y | D | H | V | V | K | M | V | E | M | G | K | Y | D | N | H | L | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | D | Y | T | E | E | E | F | K | Q | M | D | T | F | I | D | H | D | R | D | M | T | F | S | Y | A | A | V | K | Q | L | E | G | K | Y | L | V | Q | N | R | V | T | G | E | I | Y | E | S | A | Q | F | L | Y | I | L | V | A | A | C | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | F | S | N | Y | P | R | E | T | R | L | Q | Y | V | K | R | F | Y | D | A | V | S | T | F | K | I | S | L | P | T | P | I | M | S | G | V | R | T | P | T | R | Q | F | S | S | C | V | L | I | E | C | G | D | S | L | D | S | I | N | A | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | S | S | A | I | V | K | Y | V | S | Q | R | A | G | I | G | I | N | A | G | R | I | R | A | L | G | S | P | I | R | G | G | E | A | F | H | T | G | C | I | P | F | Y | K | H | F | Q | T | A | V | K | S | C | S | Q | G | G | V | R | G | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | A | A | T | L | F | Y | P | M | W | H | L | E | V | E | S | L | L | V | L | K | N | N | R | G | V | E | G | N | R | V | R | H | M | D | Y | G | V | Q | I | N | K | L | M | Y | T | R | L | L | K | G | E | D | I | T | L | F | S | P | S | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | V | P | G | L | Y | D | A | F | F | A | D | Q | E | E | F | E | R | L | Y | T | K | Y | E | K | D | D | S | I | R | K | Q | R | V | K | A | V | E | L | F | S | L | M | M | Q | E | R | A | S | T | G | R | I | Y | I | Q | N | V | D | H | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | N | T | H | S | P | F | D | P | A | I | A | P | V | R | Q | S | N | L | C | L | E | I | A | L | P | T | K | P | L | N | D | V | N | D | E | N | G | E | I | A | L | C | T | L | S | A | F | N | L | G | A | I | N | N | L | D | E | L | E | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | L | A | I | L | A | V | R | A | L | D | A | L | L | D | Y | Q | D | Y | P | I | P | A | A | K | R | G | A | M | G | R | R | T | L | G | I | G | V | I | N | F | A | Y | Y | L | A | K | H | G | K | R | Y | S | D | G | S | A | N | N | L | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | H | K | T | F | E | A | I | Q | Y | Y | L | L | K | A | S | N | E | L | A | K | E | Q | G | A | C | P | W | F | N | E | T | T | Y | A | K | G | I | L | P | I | D | T | Y | K | K | D | L | D | T | I | A | N | E | P | L | H | Y | D | W | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660
Sequence |  | A | L | R | E | S | I | K | T | H | G | L | R | N | S | T | L | S | A | L | M | P | S | E | T | S | S | Q | I | S | N | A | T | N | G | I | E | P | P | R | G | Y | V | S | I | K | A | S | K | D | G | I | L | R | Q | V | V | P | D | Y | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720
Sequence |  | H | L | H | D | A | Y | E | L | L | W | E | M | P | G | N | D | G | Y | L | Q | L | V | G | I | M | Q | K | F | I | D | Q | S | I | S | A | N | T | N | Y | D | P | S | R | F | P | S | G | K | V | P | M | Q | Q | L | L | K | D | L | L | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | .
Sequence |  | A | Y | K | F | G | V | K | T | L | Y | Y | Q | N | T | R | D | G | A | E | D | A | Q | D | D | L | V | P | S | I | Q | D | D | G | C | E | S | G | A | C | K | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3r1rB_ |

### PDB 3r1r chain B

Region: 5 - 737
Aligned: 733
Modelled: 733
Confidence: 100.0%
Identity: 100%
PDB header:complex (oxidoreductase/peptide)
Chain: B: PDB Molecule:ribonucleotide reductase r1 protein;
PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli

Phyre2
2 |
| c3hnfA_ |

### PDB 3hnf chain A

Region: 19 - 735
Aligned: 669
Modelled: 700
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit;
PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp

Phyre2
3 |
| c2wghA_ |

### PDB 2wgh chain A

Region: 80 - 735
Aligned: 622
Modelled: 643
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large
PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg.

Phyre2
4 |
| c1pemA_ |

### PDB 1pem chain A

Region: 81 - 736
Aligned: 632
Modelled: 656
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha
PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium

Phyre2
5 |
| c2cvuA_ |

### PDB 2cvu chain A

Region: 92 - 735
Aligned: 609
Modelled: 628
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain
PDBTitle: structures of yeast ribonucleotide reductase i

Phyre2
6 |
| d1rlra2 |

### PDB 1rlr chain A domain 2

Region: 222 - 743
Aligned: 522
Modelled: 522
Confidence: 100.0%
Identity: 99%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: R1 subunit of ribonucleotide reductase, C-terminal domain

Phyre2
7 |
| c1xjeA_ |

### PDB 1xje chain A

Region: 130 - 736
Aligned: 546
Modelled: 568
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent;
PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex

Phyre2
8 |
| d1peqa2 |

### PDB 1peq chain A domain 2

Region: 222 - 736
Aligned: 491
Modelled: 512
Confidence: 100.0%
Identity: 25%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: R1 subunit of ribonucleotide reductase, C-terminal domain

Phyre2
9 |
| d1l1la_ |

### PDB 1l1l chain A

Region: 115 - 730
Aligned: 515
Modelled: 526
Confidence: 100.0%
Identity: 15%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: B12-dependent (class II) ribonucleotide reductase

Phyre2
10 |
| d1rlra1 |

### PDB 1rlr chain A domain 1

Region: 10 - 221
Aligned: 212
Modelled: 212
Confidence: 100.0%
Identity: 100%
Fold: R1 subunit of ribonucleotide reductase, N-terminal domain
Superfamily: R1 subunit of ribonucleotide reductase, N-terminal domain
Family: R1 subunit of ribonucleotide reductase, N-terminal domain

Phyre2
11 |
| d1peqa1 |

### PDB 1peq chain A domain 1

Region: 74 - 220
Aligned: 139
Modelled: 142
Confidence: 100.0%
Identity: 14%
Fold: R1 subunit of ribonucleotide reductase, N-terminal domain
Superfamily: R1 subunit of ribonucleotide reductase, N-terminal domain
Family: R1 subunit of ribonucleotide reductase, N-terminal domain

Phyre2
12 |
| d1hk8a_ |

### PDB 1hk8 chain A

Region: 397 - 557
Aligned: 140
Modelled: 161
Confidence: 95.3%
Identity: 13%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: Class III anaerobic ribonucleotide reductase NRDD subunit

Phyre2
13 |
| c1hk8A_ |

### PDB 1hk8 chain A

Region: 397 - 557
Aligned: 140
Modelled: 161
Confidence: 95.3%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp

Phyre2
14 |
| d1h16a_ |

### PDB 1h16 chain A

Region: 396 - 583
Aligned: 161
Modelled: 188
Confidence: 86.4%
Identity: 19%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: PFL-like

Phyre2
15 |
| d1qhma_ |

### PDB 1qhm chain A

Region: 396 - 527
Aligned: 116
Modelled: 132
Confidence: 43.8%
Identity: 17%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: PFL-like

Phyre2
16 |
| c2f3oB_ |

### PDB 2f3o chain B

Region: 397 - 583
Aligned: 166
Modelled: 187
Confidence: 43.3%
Identity: 19%
PDB header:unknown function
Chain: B: PDB Molecule:pyruvate formate-lyase 2;
PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus

Phyre2
17 |
| d1r9da_ |

### PDB 1r9d chain A

Region: 397 - 583
Aligned: 166
Modelled: 187
Confidence: 42.8%
Identity: 16%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: PFL-like

Phyre2
18 |
| d1h3ob_ |

### PDB 1h3o chain B

Region: 533 - 564
Aligned: 32
Modelled: 32
Confidence: 34.1%
Identity: 13%
Fold: Histone-fold
Superfamily: Histone-fold
Family: TBP-associated factors, TAFs

Phyre2
19 |
| d2okqa1 |

### PDB 2okq chain A domain 1

Region: 221 - 256
Aligned: 36
Modelled: 36
Confidence: 33.0%
Identity: 8%
Fold: Ferredoxin-like
Superfamily: Dimeric alpha+beta barrel
Family: YbaA-like

Phyre2
20 |
| d1vjfa_ |

### PDB 1vjf chain A

Region: 520 - 641
Aligned: 99
Modelled: 122
Confidence: 31.5%
Identity: 18%
Fold: YbaK/ProRS associated domain
Superfamily: YbaK/ProRS associated domain
Family: YbaK/ProRS associated domain

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3r1rB_ |
|  | 100.0 | 100 | PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli
2 | c3hnfA_ |
|  | 100.0 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp
3 | c2wghA_ |
|  | 100.0 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg.
4 | c1pemA_ |
|  | 100.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium
5 | c2cvuA_ |
|  | 100.0 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i
6 | d1rlra2 |
|  | 100.0 | 99 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain
7 | c1xjeA_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex
8 | d1peqa2 |
|  | 100.0 | 25 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain
9 | d1l1la_ |
|  | 100.0 | 15 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:B12-dependent (class II) ribonucleotide reductase
10 | d1rlra1 |
|  | 100.0 | 100 | Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain
11 | d1peqa1 |
|  | 100.0 | 14 | Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain
12 | d1hk8a_ |
|  | 95.3 | 13 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit
13 | c1hk8A_ |
|  | 95.3 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp
14 | d1h16a_ |
|  | 86.4 | 19 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
15 | d1qhma_ |
|  | 43.8 | 17 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
16 | c2f3oB_ |
|  | 43.3 | 19 | PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus
17 | d1r9da_ |
|  | 42.8 | 16 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
18 | d1h3ob_ |
|  | 34.1 | 13 | Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs
19 | d2okqa1 |
|  | 33.0 | 8 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YbaA-like
20 | d1vjfa_ |
|  | 31.5 | 18 | Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain
21 | c2okqB_ |
| not modelled | 22.8 | 8 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ybaa; PDBTitle: crystal structure of unknown conserved ybaa protein from2 shigella flexneri
22 | c2bjgB_ |
| not modelled | 22.6 | 12 | PDB header:hydrolase Chain: B: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of conjugated bile acid hydrolase from2 clostridium perfringens in complex with reaction products3 taurine and deoxycholate
23 | c2hezB_ |
| not modelled | 20.8 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:bile salt hydrolase; PDBTitle: bifidobacterium longum bile salt hydrolase
24 | d2pvaa_ |
| not modelled | 19.7 | 12 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Penicillin V acylase
25 | d1j09a2 |
| not modelled | 19.2 | 14 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
26 | d2ccqa1 |
| not modelled | 18.5 | 16 | Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain
27 | c1pgjA_ |
| not modelled | 14.7 | 39 | PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase; PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei
28 | c3pg6D_ |
| not modelled | 14.5 | 15 | PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like
29 | d2b4va2 |
| not modelled | 13.7 | 44 | Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:RNA editing terminal uridyl transferase 2, RET2, catalytic domain
30 | c2iz1C_ |
| not modelled | 13.7 | 28 | PDB header:oxidoreductase Chain: C: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating; PDBTitle: 6pdh complexed with pex inhibitor synchrotron data
31 | d1vmha_ |
| not modelled | 12.1 | 13 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
32 | d1vmfa_ |
| not modelled | 12.1 | 16 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
33 | d1ywsa1 |
| not modelled | 12.1 | 21 | Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger
34 | d1mska_ |
| not modelled | 12.1 | 20 | Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Methionine synthase SAM-binding domain
35 | c2p4qA_ |
| not modelled | 12.0 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating 1; PDBTitle: crystal structure analysis of gnd1 in saccharomyces cerevisiae
36 | c2jr7A_ |
| not modelled | 11.6 | 21 | PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1
37 | d1vmja_ |
| not modelled | 11.5 | 26 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
38 | d1wgea1 |
| not modelled | 11.2 | 21 | Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger
39 | d1avca2 |
| not modelled | 10.9 | 14 | Fold:Annexin Superfamily:Annexin Family:Annexin
40 | d1vkia_ |
| not modelled | 10.5 | 13 | Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain
41 | c2p6hB_ |
| not modelled | 10.3 | 26 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of hypothetical protein ape1520 from aeropyrum2 pernix k1
42 | c2xrgA_ |
| not modelled | 10.3 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor
43 | c2oqcB_ |
| not modelled | 10.3 | 10 | PDB header:hydrolase Chain: B: PDB Molecule:penicillin v acylase; PDBTitle: crystal structure of penicillin v acylase from bacillus subtilis
44 | d1xn7a_ |
| not modelled | 10.3 | 64 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG
45 | d2d0ob1 |
| not modelled | 9.6 | 10 | Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit
46 | c3rcqA_ |
| not modelled | 9.1 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase; PDBTitle: crystal structure of human aspartate beta-hydroxylase isoform a
47 | c2qlwA_ |
| not modelled | 8.9 | 20 | PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum
48 | c2qlxA_ |
| not modelled | 8.9 | 20 | PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose
49 | d1vpha_ |
| not modelled | 8.7 | 14 | Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like
50 | c2p6cB_ |
| not modelled | 8.5 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5.
51 | d1wiga2 |
| not modelled | 8.3 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
52 | d2g5ca2 |
| not modelled | 8.3 | 33 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
53 | c3dzbA_ |
| not modelled | 8.2 | 26 | PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus
54 | c2xr9A_ |
| not modelled | 7.8 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2)
55 | d1f6da_ |
| not modelled | 7.7 | 18 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase
56 | d1x8da1 |
| not modelled | 7.5 | 40 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like
57 | c1vraA_ |
| not modelled | 7.4 | 10 | PDB header:transferase Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
58 | c2g5cD_ |
| not modelled | 7.4 | 32 | PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus
59 | d1gv2a2 |
| not modelled | 7.4 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain
60 | d1f0ya2 |
| not modelled | 7.3 | 28 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
61 | c2pv7B_ |
| not modelled | 7.2 | 39 | PDB header:isomerase, oxidoreductase Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm) PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution
62 | c3sggA_ |
| not modelled | 7.1 | 7 | PDB header:hydrolase Chain: A: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_2193) from2 bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution
63 | c1idzA_ |
| not modelled | 7.0 | 24 | PDB header:dna-binding protein Chain: A: PDB Molecule:mouse c-myb dna-binding domain repeat 3; PDBTitle: structure of myb transforming protein, nmr, 20 structures
64 | c3kowH_ |
| not modelled | 6.9 | 20 | PDB header:metal binding protein Chain: H: PDB Molecule:d-ornithine aminomutase s component; PDBTitle: crystal structure of ornithine 4,5 aminomutase backsoaked complex
65 | c3ggpA_ |
| not modelled | 6.8 | 32 | PDB header:oxidoreductase Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from a. aeolicus in2 complex with hydroxyphenyl propionate and nad+
66 | d1dm5a_ |
| not modelled | 6.8 | 19 | Fold:Annexin Superfamily:Annexin Family:Annexin
67 | d1at3a_ |
| not modelled | 6.7 | 30 | Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin
68 | d2csba2 |
| not modelled | 6.7 | 21 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain
69 | c2wasA_ |
| not modelled | 6.6 | 25 | PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase; PDBTitle: structure of the fungal type i fas ppt domain
70 | d1wdka3 |
| not modelled | 6.6 | 39 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
71 | d2pgda2 |
| not modelled | 6.6 | 28 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
72 | d1hm6a_ |
| not modelled | 6.5 | 18 | Fold:Annexin Superfamily:Annexin Family:Annexin
73 | d1nbwb_ |
| not modelled | 6.4 | 25 | Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit
74 | c2ep9A_ |
| not modelled | 6.3 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:l-gulonate 3-dehydrogenase; PDBTitle: crystal structure of the rabbit l-gulonate 3-dehydrogenase2 (nadh form)
75 | d1chua3 |
| not modelled | 6.2 | 15 | Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
76 | c3crw1_ |
| not modelled | 6.2 | 16 | PDB header:hydrolase Chain: 1: PDB Molecule:xpd/rad3 related dna helicase; PDBTitle: "xpd_apo"
77 | d1eexb_ |
| not modelled | 6.1 | 22 | Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Diol dehydratase, beta subunit
78 | d1vzva_ |
| not modelled | 5.9 | 30 | Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin
79 | c2c1fA_ |
| not modelled | 5.9 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:bifunctional endo-1,4-beta-xylanase a; PDBTitle: the structure of the family 11 xylanase from neocallimastix2 patriciarum
80 | d1i36a2 |
| not modelled | 5.9 | 28 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
81 | c2h1zA_ |
| not modelled | 5.9 | 50 | PDB header:toxin Chain: A: PDB Molecule:hybrid atracotoxin; PDBTitle: structure of a dual-target spider toxin
82 | d1wo8a1 |
| not modelled | 5.8 | 13 | Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA
83 | d1hrti_ |
| not modelled | 5.8 | 40 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Hirudin-like
84 | c2v4iA_ |
| not modelled | 5.8 | 6 | PDB header:transferase Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain; PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2
85 | d1zeta1 |
| not modelled | 5.8 | 20 | Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain
86 | d3cuma2 |
| not modelled | 5.8 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
87 | c2dwuA_ |
| not modelled | 5.8 | 15 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis
88 | d1mbja_ |
| not modelled | 5.8 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain
89 | c1mbjA_ |
| not modelled | 5.8 | 21 | PDB header:dna binding protein Chain: A: PDB Molecule:myb proto-oncogene protein; PDBTitle: mouse c-myb dna-binding domain repeat 3
90 | c2rpaA_ |
| not modelled | 5.8 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme
91 | d1sfkb_ |
| not modelled | 5.7 | 20 | Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C
92 | d1uoua1 |
| not modelled | 5.7 | 18 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
93 | c3njqB_ |
| not modelled | 5.7 | 30 | PDB header:viral protein/inhibitor Chain: B: PDB Molecule:orf 17; PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor
94 | d1m9ia2 |
| not modelled | 5.7 | 22 | Fold:Annexin Superfamily:Annexin Family:Annexin
95 | c2p6uA_ |
| not modelled | 5.7 | 36 | PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase
96 | c2rafC_ |
| not modelled | 5.7 | 17 | PDB header:oxidoreductase Chain: C: PDB Molecule:putative dinucleotide-binding oxidoreductase; PDBTitle: crystal structure of putative dinucleotide-binding2 oxidoreductase (np_786167.1) from lactobacillus plantarum3 at 1.60 a resolution
97 | d1h4ga_ |
| not modelled | 5.6 | 17 | Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12
98 | d2pv7a2 |
| not modelled | 5.6 | 44 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
99 | c2ysrA_ |
| not modelled | 5.6 | 17 | PDB header:signaling protein Chain: A: PDB Molecule:dep domain-containing protein 1; PDBTitle: solution structure of the dep domain from human dep domain-2 containing protein 1

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0