BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (70 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AAS7 Uncharacterized protein ybcJ n=158 Tax=Gammaprot... 142 5e-33 UniRef50_Q1K491 RNA-binding S4 n=2 Tax=Desulfuromonadales RepID=... 70 2e-11 UniRef50_A0KYH4 RNA-binding S4 domain protein n=13 Tax=Gammaprot... 66 3e-10 UniRef50_D0WCJ3 S4 RNA-binding domain protein n=28 Tax=Neisseria... 63 2e-09 UniRef50_A1RL52 RNA-binding S4 domain protein n=13 Tax=Shewanell... 63 3e-09 UniRef50_A3NBX1 Conserved domain protein n=33 Tax=Burkholderia R... 60 2e-08 UniRef50_B1Y6F1 RNA-binding S4 domain protein n=32 Tax=Bacteria ... 60 2e-08 UniRef50_A6GUC8 Putative uncharacterized protein n=2 Tax=Proteob... 59 3e-08 UniRef50_C4ZNZ6 RNA-binding S4 domain protein n=4 Tax=Bacteria R... 58 8e-08 UniRef50_C1D9I9 Putative RNA-binding protein n=1 Tax=Laribacter ... 57 2e-07 UniRef50_A6SVF2 Uncharacterized conserved protein n=8 Tax=Burkho... 55 5e-07 UniRef50_B3EA79 S4 domain protein YaaA n=9 Tax=Bacteria RepID=B3... 55 1e-06 UniRef50_Q1IXU2 RNA-binding S4 n=4 Tax=Bacteria RepID=Q1IXU2_DEIGD 54 1e-06 UniRef50_Q7NXD6 Putative uncharacterized protein n=1 Tax=Chromob... 54 2e-06 UniRef50_Q8YS38 Asl3253 protein n=3 Tax=Bacteria RepID=Q8YS38_ANASP 52 4e-06 UniRef50_Q30QF2 RNA-binding S4 n=2 Tax=Campylobacterales RepID=Q... 52 7e-06 UniRef50_B0RQY2 Putative uncharacterized protein n=15 Tax=Proteo... 51 9e-06 UniRef50_Q47Z52 Putative uncharacterized protein n=1 Tax=Colwell... 50 1e-05 UniRef50_Q2YZS1 Putative uncharacterized protein n=6 Tax=Bacteri... 50 2e-05 UniRef50_C7NC97 S4 domain protein YaaA n=3 Tax=Bacteria RepID=C7... 50 2e-05 UniRef50_C0QLP4 Putative uncharacterized protein n=1 Tax=Desulfo... 50 3e-05 UniRef50_A1SRW3 Putative uncharacterized protein n=1 Tax=Psychro... 48 1e-04 UniRef50_B4AXG0 RNA-binding S4 domain protein n=2 Tax=Bacteria R... 47 1e-04 UniRef50_A2SHW4 Putative uncharacterized protein n=1 Tax=Methyli... 47 1e-04 UniRef50_Q1ZHE9 Putative uncharacterized protein n=1 Tax=Psychro... 47 1e-04 UniRef50_D1AW62 RNA-binding S4 domain protein n=2 Tax=Bacteria R... 47 2e-04 UniRef50_A4FA99 RNA-binding S4 n=8 Tax=Bacteria RepID=A4FA99_SACEN 47 2e-04 UniRef50_A4T9J8 RNA-binding S4 domain protein n=3 Tax=Actinomyce... 47 2e-04 UniRef50_Q3A8P4 S4 domain protein n=9 Tax=Bacteria RepID=Q3A8P4_... 47 2e-04 UniRef50_Q2JW54 S4 domain protein n=11 Tax=Bacteria RepID=Q2JW54... 47 2e-04 UniRef50_C6XTU3 RNA-binding S4 domain protein n=4 Tax=Sphingobac... 46 3e-04 UniRef50_A5F078 Putative uncharacterized protein n=27 Tax=Vibrio... 46 3e-04 UniRef50_B2IY27 RNA-binding S4 domain protein n=6 Tax=Cyanobacte... 46 3e-04 UniRef50_D2MMX5 S4 domain protein n=1 Tax=Bulleidia extructa W12... 46 3e-04 UniRef50_Q39ZH7 RNA-binding S4 n=5 Tax=Bacteria RepID=Q39ZH7_GEOMG 46 4e-04 UniRef50_Q46KV3 RNA-binding S4 n=6 Tax=Cyanobacteria RepID=Q46KV... 45 6e-04 UniRef50_C0W7H4 Putative uncharacterized protein n=1 Tax=Actinom... 45 6e-04 UniRef50_A1SHC1 RNA-binding S4 domain protein n=8 Tax=Bacteria R... 45 7e-04 UniRef50_A2BWE9 Putative uncharacterized protein n=3 Tax=Bacteri... 45 8e-04 UniRef50_B5IMQ5 S4 domain protein n=1 Tax=Cyanobium sp. PCC 7001... 44 0.001 UniRef50_C1ZC96 Uncharacterized conserved protein n=4 Tax=Bacter... 44 0.002 UniRef50_D1VQP8 RNA-binding S4 domain protein n=7 Tax=Actinomyce... 44 0.002 UniRef50_A9KPP3 RNA-binding S4 domain protein n=10 Tax=Bacteria ... 44 0.002 UniRef50_D2NNX4 Uncharacterized conserved protein n=4 Tax=Bacter... 42 0.005 UniRef50_C5C9J3 Uncharacterized conserved protein n=33 Tax=Bacte... 42 0.008 UniRef50_Q3IFL5 Putative uncharacterized protein n=3 Tax=Alterom... 42 0.008 UniRef50_C9P6X8 Putative uncharacterized protein n=2 Tax=Vibrio ... 42 0.009 UniRef50_C5REZ0 S4 domain protein YaaA n=2 Tax=Bacteria RepID=C5... 41 0.010 UniRef50_D1BQ79 RNA-binding S4 domain protein n=3 Tax=Veillonell... 41 0.011 UniRef50_C6WCR0 RNA-binding S4 domain protein n=1 Tax=Actinosynn... 41 0.014 UniRef50_Q47ZU6 Putative uncharacterized protein n=1 Tax=Colwell... 41 0.015 UniRef50_Q7MEF9 Uncharacterized conserved protein n=29 Tax=Prote... 40 0.020 UniRef50_Q05Y91 RNA-binding S4 n=3 Tax=Bacteria RepID=Q05Y91_9SYNE 40 0.026 UniRef50_B5ET37 Putative uncharacterized protein n=4 Tax=Vibrion... 39 0.040 UniRef50_D1AIS8 RNA-binding S4 domain protein n=1 Tax=Sebaldella... 39 0.045 UniRef50_C5BW46 RNA-binding S4 domain protein n=1 Tax=Beutenberg... 39 0.060 UniRef50_A0JUK2 RNA-binding S4 domain protein n=5 Tax=Bacteria R... 39 0.062 UniRef50_B2GKW6 Putative uncharacterized protein n=1 Tax=Kocuria... 39 0.063 UniRef50_A7BD09 Putative uncharacterized protein n=1 Tax=Actinom... 39 0.073 UniRef50_B9Y5K4 Putative uncharacterized protein n=1 Tax=Holdema... 38 0.095 >UniRef50_P0AAS7 Uncharacterized protein ybcJ n=158 Tax=Gammaproteobacteria RepID=YBCJ_ECOLI Length = 70 Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS Sbjct: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 Query: 61 FAGHSVQVVA 70 FAGHSVQVVA Sbjct: 61 FAGHSVQVVA 70 >UniRef50_Q1K491 RNA-binding S4 n=2 Tax=Desulfuromonadales RepID=Q1K491_DESAC Length = 70 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 44/66 (66%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 F L H ++EL +LLK+ G SG AK I +G+V+VDG VE+RKRCKI +GQ V F+ Sbjct: 4 VFDLEGHDYIELNNLLKVTGLCHSGGLAKRLIEDGEVRVDGQVESRKRCKIRSGQVVEFS 63 Query: 63 GHSVQV 68 G + V Sbjct: 64 GEQIDV 69 >UniRef50_A0KYH4 RNA-binding S4 domain protein n=13 Tax=Gammaproteobacteria RepID=A0KYH4_SHESA Length = 76 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/59 (55%), Positives = 43/59 (72%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 +EL +LK++G S +G +AK I EG V V+G VETRKR K+VAG VSF G SVQ++A Sbjct: 16 IELYKVLKVQGMSNAGGEAKHVIDEGLVTVNGEVETRKRKKVVAGDIVSFNGESVQIIA 74 >UniRef50_D0WCJ3 S4 RNA-binding domain protein n=28 Tax=Neisseriaceae RepID=D0WCJ3_NEILA Length = 121 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 42/67 (62%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT L + ++ LCDLLKL G +ESG QAK IAEG V +G ETRK KI G+ + F Sbjct: 47 ATVYLEDNEYIALCDLLKLAGLAESGGQAKAFIAEGLVLRNGETETRKTAKIRGGEVIEF 106 Query: 62 AGHSVQV 68 G +++ Sbjct: 107 DGARLEI 113 >UniRef50_A1RL52 RNA-binding S4 domain protein n=13 Tax=Shewanella RepID=A1RL52_SHESW Length = 79 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 43/59 (72%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 +EL +LK++G + +G +AK I GQV V+G +ETRKR KI+AG VSF G +VQ++A Sbjct: 19 IELYKVLKVQGMTNAGGEAKHFIDAGQVTVNGEIETRKRKKIIAGDMVSFNGVTVQIIA 77 >UniRef50_A3NBX1 Conserved domain protein n=33 Tax=Burkholderia RepID=A3NBX1_BURP6 Length = 73 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 38/57 (66%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 VEL +LLKL G ++SG AK+ +A G VKVDGAVE RK CK+ AGQ V + V Sbjct: 13 VELHNLLKLTGLADSGGSAKMIVASGAVKVDGAVELRKTCKVRAGQVVLLGDTRIAV 69 >UniRef50_B1Y6F1 RNA-binding S4 domain protein n=32 Tax=Bacteria RepID=B1Y6F1_LEPCP Length = 74 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 F+L + H+ L LLK G ++SG AK IA+G V++DG E RK CK+ AGQ V+FAG Sbjct: 6 FTL-RGDHIGLDALLKATGLADSGGAAKALIAQGLVQIDGQTELRKTCKVRAGQCVTFAG 64 Query: 64 HSVQVVA 70 V V A Sbjct: 65 SRVLVAA 71 >UniRef50_A6GUC8 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=A6GUC8_9BURK Length = 84 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + K P VEL +LK +GW SG +AK IA+G V V+G +ET+KR KIV G + Sbjct: 15 MNEVIINKEP-VELYKILKFQGWLSSGGEAKNVIADGHVLVNGQIETQKRKKIVGGDVIE 73 Query: 61 FAG 63 F G Sbjct: 74 FDG 76 >UniRef50_C4ZNZ6 RNA-binding S4 domain protein n=4 Tax=Bacteria RepID=C4ZNZ6_THASP Length = 74 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 39/59 (66%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 +++L LLK G ESG A A+ G VKVDG E+RKR K+ GQ VSFAG +V++V Sbjct: 11 YIQLDQLLKAAGLVESGGAAHAAVENGLVKVDGKPESRKRAKLRPGQRVSFAGEAVELV 69 >UniRef50_C1D9I9 Putative RNA-binding protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9I9_LARHH Length = 77 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 38/58 (65%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 V LC+LLK+ G +SG K +A G V+VDG E RK CKI AGQTVS G +++V Sbjct: 16 FVPLCNLLKMCGVVDSGGAGKQLVATGVVEVDGQTELRKTCKIRAGQTVSGPGFTIRV 73 >UniRef50_A6SVF2 Uncharacterized conserved protein n=8 Tax=Burkholderiales RepID=A6SVF2_JANMA Length = 73 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 37/63 (58%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 VEL LLKL G +SG K+ +A G+VKVDG E RK CKI AGQ V+ ++ Sbjct: 9 NDEFVELNQLLKLVGICDSGGAGKVLVASGKVKVDGQTELRKTCKIRAGQVVALGDVRIK 68 Query: 68 VVA 70 V A Sbjct: 69 VRA 71 >UniRef50_B3EA79 S4 domain protein YaaA n=9 Tax=Bacteria RepID=B3EA79_GEOLS Length = 72 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 +++L LKL SG +AKI I EGQ++V+GAVETR+ K+ G T++ G S V+ Sbjct: 11 YIKLDSFLKLANLVMSGGEAKIVIQEGQIRVNGAVETRRGRKLYPGDTIALTGSSSFVI 69 >UniRef50_Q1IXU2 RNA-binding S4 n=4 Tax=Bacteria RepID=Q1IXU2_DEIGD Length = 66 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + ++L D LKL G ++G +AK + G+V+V+G +ETR+R K+ G V +AG V+ Sbjct: 4 ERDTIDLQDFLKLRGLVDTGGEAKFRVQGGEVQVNGEIETRRRKKLRRGDIVEYAGERVR 63 Query: 68 V 68 V Sbjct: 64 V 64 >UniRef50_Q7NXD6 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NXD6_CHRVO Length = 71 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 36/60 (60%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 ++ LCDLLK SG AK IAEG V V+G VE RK CKI AGQ VS G + V A Sbjct: 11 YIALCDLLKACNVCHSGGAAKHFIAEGNVSVNGQVELRKTCKIRAGQQVSGDGFLIVVEA 70 >UniRef50_Q8YS38 Asl3253 protein n=3 Tax=Bacteria RepID=Q8YS38_ANASP Length = 93 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 +A + L ++L LKL G + +G QAK+ I +G VKV+GAVETR+ K+V+ V+ Sbjct: 16 LAQYKLILISMIKLDQFLKLVGIAPTGGQAKLMIMDGDVKVNGAVETRRGRKLVSSDRVT 75 Query: 61 FAGHSVQV 68 AG +V Sbjct: 76 VAGQVFEV 83 >UniRef50_Q30QF2 RNA-binding S4 n=2 Tax=Campylobacterales RepID=Q30QF2_SULDN Length = 67 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 K ++EL LLK+ +SGA+AK+ +A+G V+ +G +E RKR KI G + A +++ Sbjct: 6 KDEYIELFKLLKVLDLVDSGAEAKLIVADGHVRRNGEIELRKRAKIRQGDVIEVADVTIE 65 Query: 68 V 68 V Sbjct: 66 V 66 >UniRef50_B0RQY2 Putative uncharacterized protein n=15 Tax=Proteobacteria RepID=B0RQY2_XANCB Length = 131 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 35/60 (58%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 ++EL LLKL G ++SG Q K +A G V VDG E RK KI GQ V ++V+A Sbjct: 63 YIELNQLLKLAGIADSGGQGKAIVASGAVSVDGVQELRKTAKIRPGQLVQLDDVEIRVLA 122 >UniRef50_Q47Z52 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47Z52_COLP3 Length = 156 Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 H VELC LLK+ G +AK+ I+EG V ++G VE +KR K+ + F G VQ+ Sbjct: 12 HQPVELCKLLKIANLVSGGGEAKVVISEGYVLLNGEVEYQKRKKVYHEDVIEFNGEVVQL 71 Query: 69 V 69 + Sbjct: 72 L 72 >UniRef50_Q2YZS1 Putative uncharacterized protein n=6 Tax=Bacteria RepID=Q2YZS1_9DELT Length = 81 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 K +EL +LK +SG +AK IA+G V+V+G VE RK KI++G + F Q Sbjct: 15 KEKSIELYKILKFVNIVQSGGEAKFVIADGLVRVNGEVEIRKGKKIISGDIIEFEKEKFQ 74 Query: 68 V 68 + Sbjct: 75 I 75 >UniRef50_C7NC97 S4 domain protein YaaA n=3 Tax=Bacteria RepID=C7NC97_LEPBD Length = 75 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 37/59 (62%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 ++L LLK ++ SG +AK+ I G+VKV+ AVETR+ KI G V FAG V V A Sbjct: 15 IKLDQLLKWANFTGSGVEAKMFIQNGEVKVNDAVETRRGKKIYDGDVVEFAGEKVAVRA 73 >UniRef50_C0QLP4 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLP4_DESAH Length = 111 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + P VEL +LK E SG +AK I +G V ++G VETRKR KI AG + F ++ Sbjct: 50 REP-VELYKILKFENLVMSGGEAKHVITQGMVTLNGQVETRKRKKIFAGDVILFGQEVLK 108 Query: 68 V 68 + Sbjct: 109 I 109 >UniRef50_A1SRW3 Putative uncharacterized protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRW3_PSYIN Length = 128 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 14 LCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 L +LK G +AK+AI EG V ++G VET+KR KI AG +SF Q+ Sbjct: 20 LYKILKFANLVSGGGEAKLAITEGYVFLNGQVETQKRKKIYAGDVISFNEQHYQI 74 >UniRef50_B4AXG0 RNA-binding S4 domain protein n=2 Tax=Bacteria RepID=B4AXG0_9CHRO Length = 70 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LK +G ++G +AKI I G+V V+G +ETR+ K+V+G V+ G + QV Sbjct: 12 IKLAQFLKWQGLVQTGGEAKIRIQGGEVLVNGTLETRRGRKLVSGDRVTIDGKTYQV 68 >UniRef50_A2SHW4 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SHW4_METPP Length = 83 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 F+L + + L LLK G ++SG AK I GQV+VDG E R+ K+ AGQ V+ +G Sbjct: 11 FAL-RGEFITLDALLKATGLADSGGAAKQLIQSGQVQVDGREELRRGAKLRAGQVVAVSG 69 Query: 64 HSVQVVA 70 V+++A Sbjct: 70 ARVRLLA 76 >UniRef50_Q1ZHE9 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHE9_9GAMM Length = 106 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 36/67 (53%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT + V L +LKL G +AK I+EG V ++G VETRKR K+ AG V F Sbjct: 9 ATLVEIREEPVALYKILKLGNLVSGGGEAKQIISEGYVSLNGEVETRKRKKVYAGDMVYF 68 Query: 62 AGHSVQV 68 +Q+ Sbjct: 69 NEQYLQI 75 >UniRef50_D1AW62 RNA-binding S4 domain protein n=2 Tax=Bacteria RepID=D1AW62_STRM9 Length = 67 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 +++L LLK E+G+ AK I EG+V VD VE R+ KI G V F G V+V Sbjct: 8 EYIKLDQLLKYANLVENGSSAKEMILEGRVLVDNEVEVRRGRKIYRGMIVEFEGERVEV 66 >UniRef50_A4FA99 RNA-binding S4 n=8 Tax=Bacteria RepID=A4FA99_SACEN Length = 71 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + + L LLKL G +E GA AK + EG+V+V+ AVETR+ ++ G VS +Q Sbjct: 7 RDGSIRLGQLLKLAGVAEHGADAKALLEEGEVRVNDAVETRRGRQVGPGDLVSLGEDVIQ 66 Query: 68 VVA 70 VV Sbjct: 67 VVG 69 >UniRef50_A4T9J8 RNA-binding S4 domain protein n=3 Tax=Actinomycetales RepID=A4T9J8_MYCGI Length = 80 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L LKL +SGA AK IA+G+V V+G VE R+ ++ G V AGH +V Sbjct: 21 IRLGQFLKLANLIDSGADAKTVIADGEVTVNGEVERRRGRQLHPGDVVGLAGHRARV 77 >UniRef50_Q3A8P4 S4 domain protein n=9 Tax=Bacteria RepID=Q3A8P4_CARHZ Length = 73 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 34/59 (57%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 ++EL LLK + +G QAK I G V V+G VETR++ KI G V AG V +V Sbjct: 10 YIELDSLLKWANIAMTGGQAKQMIKSGMVLVNGVVETRRKKKIYPGDRVEIAGGPVLIV 68 >UniRef50_Q2JW54 S4 domain protein n=11 Tax=Bacteria RepID=Q2JW54_SYNJA Length = 93 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 35/60 (58%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 P ++L LKL G +G QAK I GQV+V+G VETR+ K+ G V+ AG QV Sbjct: 15 DPLIKLDQFLKLTGVVPTGGQAKQLIQAGQVRVNGEVETRRGRKLRLGDEVAVAGQVWQV 74 >UniRef50_C6XTU3 RNA-binding S4 domain protein n=4 Tax=Sphingobacteriaceae RepID=C6XTU3_PEDHD Length = 68 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M F L + + L LLK +SG +A+ + +G VK +G V+ RKR K+ G + Sbjct: 1 MIKFKL-EGEFIPLIQLLKATALVQSGGEAQTVVEDGLVKYNGTVDYRKRLKVRVGDVID 59 Query: 61 FAGHSVQVV 69 F G + V+ Sbjct: 60 FMGQKITVI 68 >UniRef50_A5F078 Putative uncharacterized protein n=27 Tax=Vibrionaceae RepID=A5F078_VIBC3 Length = 160 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 31/50 (62%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 +EL +LK+ G +AK I+EG V V+G VETRKRCK+ G + F Sbjct: 27 IELHKVLKIANAVSGGGEAKHVISEGYVFVNGDVETRKRCKVFDGDLIEF 76 >UniRef50_B2IY27 RNA-binding S4 domain protein n=6 Tax=Cyanobacteria RepID=B2IY27_NOSP7 Length = 84 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LKL G +G QAK+ I G V+V+G +ETR+ ++V G V+ G +++V Sbjct: 9 IKLNQYLKLMGIVPTGGQAKLMIQGGDVQVNGMLETRRGRRLVPGDKVTIEGKTLEV 65 >UniRef50_D2MMX5 S4 domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX5_9FIRM Length = 69 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 K ++ L + LK G ++G ++K+ I EG VKV+ VETR+ K+ G V++ G + Sbjct: 5 KQDYICLQNFLKFYGLVQTGGESKVVIQEGLVKVNQEVETRRGRKLYPGDEVTYQGKTFM 64 Query: 68 V 68 V Sbjct: 65 V 65 >UniRef50_Q39ZH7 RNA-binding S4 n=5 Tax=Bacteria RepID=Q39ZH7_GEOMG Length = 65 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 +++L LK E SG +AKI IA+G+V+V+G VETR+ K+ G V G ++ V Sbjct: 6 EYIKLDSFLKAENIVASGGEAKIIIADGEVRVNGEVETRRGRKLRVGDRVEAGGETLVV 64 >UniRef50_Q46KV3 RNA-binding S4 n=6 Tax=Cyanobacteria RepID=Q46KV3_PROMT Length = 72 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 65 ++L LK G ++G +AK+ I G++ V+G VETR+ K++ G +SFA + Sbjct: 1 MKLDQFLKFMGIVQTGGEAKMIIKSGKISVNGMVETRRGRKLIDGDQISFANET 54 >UniRef50_C0W7H4 Putative uncharacterized protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7H4_9ACTO Length = 102 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTV 59 ++L LKL G E GA+A+IAI G V+V+G VETR+ + AG V Sbjct: 26 IKLGQFLKLAGLVEDGAEARIAIQSGDVRVNGEVETRRGHHLAAGDVV 73 >UniRef50_A1SHC1 RNA-binding S4 domain protein n=8 Tax=Bacteria RepID=A1SHC1_NOCSJ Length = 84 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L LKL ESGA AK IA+G V+V+G VETR+ ++V G V+ + +V Sbjct: 16 IRLGQFLKLANLVESGADAKPVIADGLVRVNGEVETRRGRQLVVGDVVTLGPAAARV 72 >UniRef50_A2BWE9 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A2BWE9_PROM5 Length = 82 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + ++L LK + SG +AKI I GQVKV+G +ET++ K+V G V F + + Sbjct: 22 YKTMKLDQFLKWHNFVSSGGEAKIFIKSGQVKVNGEIETKRGRKLVKGDKVMFLKNEL 79 >UniRef50_B5IMQ5 S4 domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMQ5_9CHRO Length = 89 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 V+L LK +G + +G +AK+ I G V+V+G +ETR+ ++ G V G + V+ Sbjct: 26 VKLDQFLKFQGLAATGGEAKLRIQRGDVRVNGVIETRRGRQLAPGDAVGIDGRELLVMP 84 >UniRef50_C1ZC96 Uncharacterized conserved protein n=4 Tax=Bacteria RepID=C1ZC96_PLALI Length = 72 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 P + L LK +GW +G AK+ I EG+V V+G V+ R+ K+ G V + G +V Sbjct: 2 PILTLDQFLKQQGWVATGGHAKLVIQEGEVIVNGEVDLRRGRKMRVGDVVEWNGERAEV 60 >UniRef50_D1VQP8 RNA-binding S4 domain protein n=7 Tax=Actinomycetales RepID=D1VQP8_9ACTO Length = 68 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + + L LKL ESG K +AEG VKV+ VETR+ ++ G V+ A SV+ Sbjct: 7 RDEMIRLGQFLKLADLVESGGDLKPLLAEGLVKVNNEVETRRGRQLSRGDVVTLADRSVR 66 Query: 68 V 68 V Sbjct: 67 V 67 >UniRef50_A9KPP3 RNA-binding S4 domain protein n=10 Tax=Bacteria RepID=A9KPP3_CLOPH Length = 71 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + ++L LK G +SG +AK I EG VKV+G VE ++ KI G ++ F VQ Sbjct: 7 REEFIKLGQALKAAGLVDSGVEAKDVITEGLVKVNGVVEYQRGKKIHGGDSIEFNNEIVQ 66 Query: 68 VV 69 +V Sbjct: 67 IV 68 >UniRef50_D2NNX4 Uncharacterized conserved protein n=4 Tax=Bacteria RepID=D2NNX4_9MICC Length = 110 Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L LKL E GAQA+ I G VKV+G +E + ++ G TV+F G +V+V Sbjct: 50 IRLGQFLKLANLVEDGAQAREVIQHGLVKVNGDIEEARGKQLHPGDTVTFNGVTVKV 106 >UniRef50_C5C9J3 Uncharacterized conserved protein n=33 Tax=Bacteria RepID=C5C9J3_MICLC Length = 80 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + + L LKL + GA A+ + +G V V+GAVETR+ ++ G V FAG + Sbjct: 15 RDESIRLGQALKLASLVDDGAMARDVVTDGLVTVNGAVETRRGAQLHDGDVVEFAGEAFV 74 Query: 68 VVA 70 V A Sbjct: 75 VQA 77 >UniRef50_Q3IFL5 Putative uncharacterized protein n=3 Tax=Alteromonadales RepID=Q3IFL5_PSEHT Length = 127 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 31/55 (56%) Query: 14 LCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 LC LLK+ E G QAK IAEG V V+ + T KR K+ +G + F G Q+ Sbjct: 17 LCKLLKVLNLVEGGGQAKNLIAEGYVGVNHEICTIKRKKLYSGDILEFDGELFQL 71 >UniRef50_C9P6X8 Putative uncharacterized protein n=2 Tax=Vibrio RepID=C9P6X8_VIBME Length = 167 Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 +EL +LKL G +AK IAEG V V+G +E RKR K+ G + F Sbjct: 25 IELYKVLKLANAVSGGGEAKHVIAEGYVAVNGELEARKRRKLYDGDLIEF 74 >UniRef50_C5REZ0 S4 domain protein YaaA n=2 Tax=Bacteria RepID=C5REZ0_CLOCL Length = 85 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 ++L +KL SG++AK+ I +V V+G +E R+ K+ G V F G S +VV Sbjct: 28 IKLDSFMKLAAIVSSGSEAKMIIKSQEVTVNGEIEERRGKKLYKGDVVEFNGESYKVV 85 >UniRef50_D1BQ79 RNA-binding S4 domain protein n=3 Tax=Veillonella RepID=D1BQ79_VEIPT Length = 77 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 ++++ LLKLEG E+G Q K I EG + ++G V T KR K G +S G V ++ Sbjct: 13 YIQIDQLLKLEGIIETGGQIKSFIDEGILTLNGQVVTEKRKKCRVGDVISCEGLDVDLI 71 >UniRef50_C6WCR0 RNA-binding S4 domain protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCR0_ACTMD Length = 91 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 + L LKL G +E GA A+ + EG+V V+G E+R+ ++ G V+ G ++VA Sbjct: 13 IRLGQFLKLAGLAEHGAHARELVEEGEVTVNGRPESRRGAQLKNGDVVAVDGEKARLVA 71 >UniRef50_Q47ZU6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZU6_COLP3 Length = 124 Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 +EL LLK+ G +AK I+EG++ V+ VE +KR KI G + F G +++V Sbjct: 14 IELYKLLKISNIVGDG-EAKTLISEGKILVNKKVEVQKRKKIRRGDVIDFDGKTIEV 69 >UniRef50_Q7MEF9 Uncharacterized conserved protein n=29 Tax=Proteobacteria RepID=Q7MEF9_VIBVY Length = 184 Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 +EL + K+ G +AK IAEG V V+G +ETRKR K+ G F Sbjct: 35 IELYKVFKIANLVSGGGEAKHVIAEGYVAVNGELETRKRRKMYDGDFFEF 84 >UniRef50_Q05Y91 RNA-binding S4 n=3 Tax=Bacteria RepID=Q05Y91_9SYNE Length = 60 Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 + L LK +GW +G +AK+ I G+V+V+G+VETR+ ++ V+ +V Sbjct: 1 MRLDQFLKWQGWVATGGEAKMRIQAGEVEVNGSVETRRGRQLQLADRVTLGSDQAEVT 58 >UniRef50_B5ET37 Putative uncharacterized protein n=4 Tax=Vibrionaceae RepID=B5ET37_VIBFM Length = 135 Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 +EL +LK+ G +AK I EG V V+G +E RKR K+ G + F Sbjct: 21 IELYKVLKIANVVSGGGEAKHVIGEGYVGVNGELEQRKRRKMYDGDVIEF 70 >UniRef50_D1AIS8 RNA-binding S4 domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIS8_SEBTE Length = 70 Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 K ++L LLK G G +A+ I EG V+V+G E R+ KI + G ++ Sbjct: 7 KTEFIKLDQLLKWAGMVGDGGEARYHILEGNVRVNGETEKRRGKKIYENDIIELDGEKIK 66 Query: 68 VV 69 +V Sbjct: 67 IV 68 >UniRef50_C5BW46 RNA-binding S4 domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BW46_BEUC1 Length = 77 Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + + L LLKL G +E GAQA+ +A+ V+VDG E R+ ++ G V+ Sbjct: 12 RDESIRLGQLLKLAGIAEDGAQARELLADDAVQVDGVAENRRGAQVHRGALVAV 65 >UniRef50_A0JUK2 RNA-binding S4 domain protein n=5 Tax=Bacteria RepID=A0JUK2_ARTS2 Length = 92 Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 + L LLKL E G +A I G VKV+G ++ R+ ++ G TV+ G +V+++ Sbjct: 30 IRLGQLLKLASLVEDGVEATELIRNGLVKVNGEIDDRRGRQLHHGDTVTVNGRTVRILT 88 >UniRef50_B2GKW6 Putative uncharacterized protein n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GKW6_KOCRD Length = 78 Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTV 59 + L LKL +E G AK ++EG V V+GAVETR+ ++ G + Sbjct: 16 IRLGQALKLANLAEDGHHAKTLVSEGAVHVNGAVETRRGAQLHPGDVL 63 >UniRef50_A7BD09 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD09_9ACTO Length = 76 Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTV 59 M+T ++ ++L +KL +E GAQA+ I G V V+G VETR+ + AG V Sbjct: 1 MSTPTIPVRGEIKLGQFIKLASLAEDGAQARELIQAGDVTVNGEVETRRGHHLSAGDLV 59 >UniRef50_B9Y5K4 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5K4_9FIRM Length = 100 Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 + L LLK+ W SG +AK+A+ E ++ V+G E R+ K+ G +S Sbjct: 42 ITLGQLLKMTDWISSGGEAKLAVKELKITVNGEKEDRRGRKLYPGDQIS 90 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AAS7 Uncharacterized protein ybcJ n=158 Tax=Gammaprot... 98 8e-20 UniRef50_D0WCJ3 S4 RNA-binding domain protein n=28 Tax=Neisseria... 91 1e-17 UniRef50_A1SHC1 RNA-binding S4 domain protein n=8 Tax=Bacteria R... 90 2e-17 UniRef50_Q8YS38 Asl3253 protein n=3 Tax=Bacteria RepID=Q8YS38_ANASP 90 3e-17 UniRef50_B3EA79 S4 domain protein YaaA n=9 Tax=Bacteria RepID=B3... 89 5e-17 UniRef50_A5F078 Putative uncharacterized protein n=27 Tax=Vibrio... 88 7e-17 UniRef50_Q2JW54 S4 domain protein n=11 Tax=Bacteria RepID=Q2JW54... 88 9e-17 UniRef50_Q1K491 RNA-binding S4 n=2 Tax=Desulfuromonadales RepID=... 88 1e-16 UniRef50_A4T9J8 RNA-binding S4 domain protein n=3 Tax=Actinomyce... 87 2e-16 UniRef50_Q1ZHE9 Putative uncharacterized protein n=1 Tax=Psychro... 86 4e-16 UniRef50_Q47Z52 Putative uncharacterized protein n=1 Tax=Colwell... 86 4e-16 UniRef50_Q7NXD6 Putative uncharacterized protein n=1 Tax=Chromob... 85 6e-16 UniRef50_C7NC97 S4 domain protein YaaA n=3 Tax=Bacteria RepID=C7... 85 7e-16 UniRef50_A1SRW3 Putative uncharacterized protein n=1 Tax=Psychro... 85 8e-16 UniRef50_A0KYH4 RNA-binding S4 domain protein n=13 Tax=Gammaprot... 85 1e-15 UniRef50_D2MMX5 S4 domain protein n=1 Tax=Bulleidia extructa W12... 84 1e-15 UniRef50_B0RQY2 Putative uncharacterized protein n=15 Tax=Proteo... 84 1e-15 UniRef50_A1RL52 RNA-binding S4 domain protein n=13 Tax=Shewanell... 84 2e-15 UniRef50_Q2YZS1 Putative uncharacterized protein n=6 Tax=Bacteri... 83 2e-15 UniRef50_B5IMQ5 S4 domain protein n=1 Tax=Cyanobium sp. PCC 7001... 82 4e-15 UniRef50_C1ZC96 Uncharacterized conserved protein n=4 Tax=Bacter... 82 5e-15 UniRef50_B2IY27 RNA-binding S4 domain protein n=6 Tax=Cyanobacte... 82 6e-15 UniRef50_B1Y6F1 RNA-binding S4 domain protein n=32 Tax=Bacteria ... 81 7e-15 UniRef50_Q3A8P4 S4 domain protein n=9 Tax=Bacteria RepID=Q3A8P4_... 81 8e-15 UniRef50_B4AXG0 RNA-binding S4 domain protein n=2 Tax=Bacteria R... 81 1e-14 UniRef50_A6GUC8 Putative uncharacterized protein n=2 Tax=Proteob... 80 2e-14 UniRef50_Q46KV3 RNA-binding S4 n=6 Tax=Cyanobacteria RepID=Q46KV... 80 2e-14 UniRef50_Q1IXU2 RNA-binding S4 n=4 Tax=Bacteria RepID=Q1IXU2_DEIGD 80 3e-14 UniRef50_Q39ZH7 RNA-binding S4 n=5 Tax=Bacteria RepID=Q39ZH7_GEOMG 80 3e-14 UniRef50_C0QLP4 Putative uncharacterized protein n=1 Tax=Desulfo... 79 4e-14 UniRef50_A3NBX1 Conserved domain protein n=33 Tax=Burkholderia R... 78 6e-14 UniRef50_A2BWE9 Putative uncharacterized protein n=3 Tax=Bacteri... 78 8e-14 UniRef50_C4ZNZ6 RNA-binding S4 domain protein n=4 Tax=Bacteria R... 78 8e-14 UniRef50_D1VQP8 RNA-binding S4 domain protein n=7 Tax=Actinomyce... 76 2e-13 UniRef50_D1AW62 RNA-binding S4 domain protein n=2 Tax=Bacteria R... 76 3e-13 UniRef50_C0W7H4 Putative uncharacterized protein n=1 Tax=Actinom... 76 4e-13 UniRef50_C1D9I9 Putative RNA-binding protein n=1 Tax=Laribacter ... 76 4e-13 UniRef50_Q30QF2 RNA-binding S4 n=2 Tax=Campylobacterales RepID=Q... 76 4e-13 UniRef50_A2SHW4 Putative uncharacterized protein n=1 Tax=Methyli... 75 7e-13 UniRef50_C6XTU3 RNA-binding S4 domain protein n=4 Tax=Sphingobac... 75 8e-13 UniRef50_A6SVF2 Uncharacterized conserved protein n=8 Tax=Burkho... 75 8e-13 UniRef50_A4FA99 RNA-binding S4 n=8 Tax=Bacteria RepID=A4FA99_SACEN 70 2e-11 Sequences not found previously or not previously below threshold: UniRef50_D2NNX4 Uncharacterized conserved protein n=4 Tax=Bacter... 87 2e-16 UniRef50_C9P6X8 Putative uncharacterized protein n=2 Tax=Vibrio ... 85 7e-16 UniRef50_B5ET37 Putative uncharacterized protein n=4 Tax=Vibrion... 82 6e-15 UniRef50_Q7MEF9 Uncharacterized conserved protein n=29 Tax=Prote... 80 3e-14 UniRef50_A3DHZ6 RNA-binding S4 n=22 Tax=Bacteria RepID=A3DHZ6_CLOTH 79 5e-14 UniRef50_D1YBL0 S4 domain protein n=3 Tax=Propionibacterium acne... 78 9e-14 UniRef50_C5REZ0 S4 domain protein YaaA n=2 Tax=Bacteria RepID=C5... 78 1e-13 UniRef50_A0JUK2 RNA-binding S4 domain protein n=5 Tax=Bacteria R... 77 2e-13 UniRef50_C5C9J3 Uncharacterized conserved protein n=33 Tax=Bacte... 77 2e-13 UniRef50_B4WNT6 Putative uncharacterized protein n=1 Tax=Synecho... 77 2e-13 UniRef50_C5V8W2 S4 domain protein n=10 Tax=Corynebacterium RepID... 76 3e-13 UniRef50_UPI0001C36FBF S4 domain-containing protein n=1 Tax=Rumi... 75 5e-13 UniRef50_C7H1W3 S4 domain protein n=5 Tax=Bacteria RepID=C7H1W3_... 75 6e-13 UniRef50_B0MRG2 Putative uncharacterized protein n=1 Tax=Eubacte... 75 6e-13 UniRef50_B8I3R4 RNA-binding S4 domain protein n=15 Tax=Bacteria ... 75 8e-13 UniRef50_A9KPP3 RNA-binding S4 domain protein n=10 Tax=Bacteria ... 74 2e-12 UniRef50_D1AIS8 RNA-binding S4 domain protein n=1 Tax=Sebaldella... 73 2e-12 UniRef50_C8P206 Conserved domain protein n=1 Tax=Erysipelothrix ... 73 3e-12 UniRef50_B9Y5K4 Putative uncharacterized protein n=1 Tax=Holdema... 73 3e-12 UniRef50_B2GKW6 Putative uncharacterized protein n=1 Tax=Kocuria... 73 4e-12 UniRef50_A7FPF2 S4 domain protein n=12 Tax=Bacteria RepID=A7FPF2... 73 4e-12 UniRef50_C7R3K8 RNA-binding S4 domain protein n=1 Tax=Jonesia de... 72 5e-12 UniRef50_B2THB6 S4 domain protein YaaA n=3 Tax=Clostridium botul... 71 8e-12 UniRef50_Q05Y91 RNA-binding S4 n=3 Tax=Bacteria RepID=Q05Y91_9SYNE 71 8e-12 UniRef50_C6WCR0 RNA-binding S4 domain protein n=1 Tax=Actinosynn... 71 1e-11 UniRef50_D0BT73 Putative uncharacterized protein n=9 Tax=Fusobac... 71 1e-11 UniRef50_A4J0F2 RNA-binding S4 domain protein n=3 Tax=Bacteria R... 71 1e-11 UniRef50_B7CCH6 Putative uncharacterized protein n=1 Tax=Eubacte... 71 1e-11 UniRef50_Q3IFL5 Putative uncharacterized protein n=3 Tax=Alterom... 71 1e-11 UniRef50_Q0IAV4 S4 domain protein n=14 Tax=Cyanobacteria RepID=Q... 70 2e-11 UniRef50_Q47ZU6 Putative uncharacterized protein n=1 Tax=Colwell... 70 2e-11 UniRef50_P05650 Uncharacterized protein yaaA n=6 Tax=Bacillaceae... 69 3e-11 UniRef50_UPI000196B722 hypothetical protein CATMIT_00450 n=1 Tax... 69 4e-11 UniRef50_A7BD09 Putative uncharacterized protein n=1 Tax=Actinom... 69 4e-11 UniRef50_B5YFF2 Conserved domain protein n=14 Tax=Bacteria RepID... 69 5e-11 UniRef50_Q02WH9 S4-like RNA-binding protein n=6 Tax=Bacilli RepI... 68 9e-11 UniRef50_A5VHF5 S4 region, YaaA n=8 Tax=Lactobacillus reuteri Re... 68 1e-10 UniRef50_Q04CX3 S4-like RNA binding protein n=23 Tax=Lactobacill... 67 2e-10 UniRef50_Q040E7 S4-like RNA binding protein n=9 Tax=Bacilli RepI... 67 2e-10 UniRef50_C4FYE0 Putative uncharacterized protein n=1 Tax=Catonel... 66 4e-10 UniRef50_C4V1P6 Putative uncharacterized protein n=2 Tax=Selenom... 65 5e-10 UniRef50_C5R9Y4 RNA-binding S4 protein n=2 Tax=Lactobacillales R... 65 6e-10 UniRef50_Q03UE2 S4-like RNA-binding protein n=88 Tax=Bacilli Rep... 64 1e-09 UniRef50_C9RXR9 S4 domain protein YaaA n=22 Tax=Bacilli RepID=C9... 64 1e-09 UniRef50_Q9RCA0 BH0003 protein n=2 Tax=Bacillus RepID=Q9RCA0_BACHD 64 1e-09 UniRef50_C8VV99 RNA-binding S4 domain protein n=1 Tax=Desulfotom... 64 1e-09 UniRef50_D0BMB1 S4 domain-containing protein YaaA n=1 Tax=Granul... 63 4e-09 UniRef50_C7XXJ9 S4 domain-containing protein YaaA n=1 Tax=Lactob... 62 5e-09 UniRef50_C8PB15 Putative uncharacterized protein n=1 Tax=Lactoba... 62 6e-09 UniRef50_A8MEA2 RNA-binding S4 domain protein n=2 Tax=Alkaliphil... 62 6e-09 UniRef50_D1BQ79 RNA-binding S4 domain protein n=3 Tax=Veillonell... 61 1e-08 UniRef50_C2EAX7 RNA-binding S4 protein n=1 Tax=Lactobacillus rum... 61 2e-08 UniRef50_C9KQB0 Conserved domain protein n=1 Tax=Mitsuokella mul... 60 2e-08 UniRef50_B2A2Y8 S4-like RNA binding protein n=2 Tax=Firmicutes R... 60 2e-08 UniRef50_D2SGH5 Putative uncharacterized protein n=1 Tax=Geoderm... 59 3e-08 UniRef50_A4VYF8 Uncharacterized conserved protein n=68 Tax=Strep... 59 3e-08 UniRef50_B1AI65 S4 domain protein YaaA n=15 Tax=Ureaplasma RepID... 59 3e-08 UniRef50_Q04HR4 S4-like RNA binding protein n=47 Tax=Lactobacill... 59 4e-08 UniRef50_Q6KIT5 Expressed protein n=1 Tax=Mycoplasma mobile RepI... 59 4e-08 UniRef50_B5Y6P2 Conserved domain protein n=1 Tax=Coprothermobact... 58 8e-08 UniRef50_C7NEZ0 Uncharacterized conserved protein n=1 Tax=Kytoco... 58 8e-08 UniRef50_C0VZC3 Putative uncharacterized protein n=1 Tax=Actinom... 58 1e-07 UniRef50_C5BW46 RNA-binding S4 domain protein n=1 Tax=Beutenberg... 57 2e-07 UniRef50_D0WQU2 RNA-binding S4 n=1 Tax=Actinomyces sp. oral taxo... 57 2e-07 UniRef50_A0AEJ0 Complete genome n=15 Tax=Listeria RepID=A0AEJ0_L... 56 3e-07 UniRef50_A5INP4 S4 region, YaaA n=62 Tax=Staphylococcus RepID=A5... 55 5e-07 UniRef50_C9LP64 Conserved domain protein n=1 Tax=Dialister invis... 55 8e-07 UniRef50_C7REZ7 S4 domain-containing protein n=5 Tax=Anaerococcu... 54 1e-06 UniRef50_D1J7E3 Putative uncharacterized protein n=1 Tax=Mycopla... 54 2e-06 UniRef50_C5J5G0 Putative uncharacterized protein MCJ_000030 n=1 ... 52 5e-06 UniRef50_Q4A746 Putative uncharacterized protein n=1 Tax=Mycopla... 52 8e-06 UniRef50_B3PLR9 Putative uncharacterized protein n=1 Tax=Mycopla... 51 9e-06 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 51 1e-05 UniRef50_Q98RK5 Putative uncharacterized protein MYPU_0030 n=1 T... 50 2e-05 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 49 4e-05 UniRef50_C4XFM1 Putative uncharacterized protein n=1 Tax=Mycopla... 48 9e-05 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 47 2e-04 UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium s... 46 3e-04 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 45 6e-04 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 44 0.002 UniRef50_Q8TYA5 Predicted RNA-binding protein containing the S4 ... 44 0.002 UniRef50_C0BJ48 RNA-binding S4 domain protein n=1 Tax=Flavobacte... 43 0.002 UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis ... 43 0.002 UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobial... 43 0.003 UniRef50_A9NE67 Putative uncharacterized protein n=2 Tax=Acholep... 43 0.004 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 43 0.004 UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla ... 43 0.004 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 42 0.005 UniRef50_B7FTM7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 42 0.007 UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=S... 42 0.007 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 41 0.009 UniRef50_Q3JNS0 Tyrosyl-tRNA synthetase n=161 Tax=cellular organ... 41 0.009 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 41 0.011 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 41 0.015 UniRef50_A1VDC0 Pseudouridine synthase n=3 Tax=Desulfovibrio vul... 41 0.017 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 40 0.018 UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia R... 40 0.021 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 40 0.024 UniRef50_B2KAR0 Hemolysin A n=1 Tax=Elusimicrobium minutum Pei19... 40 0.024 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 40 0.025 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 40 0.028 UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglo... 40 0.029 UniRef50_A7HKW0 Hemolysin A n=1 Tax=Fervidobacterium nodosum Rt1... 39 0.043 UniRef50_Q0VQK2 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 39 0.050 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 39 0.052 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 39 0.066 UniRef50_A6ES27 Pseudouridylate synthase (Ribosomal large subuni... 38 0.078 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 38 0.086 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 38 0.092 UniRef50_Q3ILJ9 Tyrosyl-tRNA synthetase 2 n=29 Tax=Bacteria RepI... 38 0.097 >UniRef50_P0AAS7 Uncharacterized protein ybcJ n=158 Tax=Gammaproteobacteria RepID=YBCJ_ECOLI Length = 70 Score = 98.0 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS Sbjct: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 Query: 61 FAGHSVQVVA 70 FAGHSVQVVA Sbjct: 61 FAGHSVQVVA 70 >UniRef50_D0WCJ3 S4 RNA-binding domain protein n=28 Tax=Neisseriaceae RepID=D0WCJ3_NEILA Length = 121 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 42/67 (62%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT L + ++ LCDLLKL G +ESG QAK IAEG V +G ETRK KI G+ + F Sbjct: 47 ATVYLEDNEYIALCDLLKLAGLAESGGQAKAFIAEGLVLRNGETETRKTAKIRGGEVIEF 106 Query: 62 AGHSVQV 68 G +++ Sbjct: 107 DGARLEI 113 >UniRef50_A1SHC1 RNA-binding S4 domain protein n=8 Tax=Bacteria RepID=A1SHC1_NOCSJ Length = 84 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + L LKL ESGA AK IA+G V+V+G VETR+ ++V G V+ + Sbjct: 11 IRDESIRLGQFLKLANLVESGADAKPVIADGLVRVNGEVETRRGRQLVVGDVVTLGPAAA 70 Query: 67 QV 68 +V Sbjct: 71 RV 72 >UniRef50_Q8YS38 Asl3253 protein n=3 Tax=Bacteria RepID=Q8YS38_ANASP Length = 93 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 42/68 (61%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 +A + L ++L LKL G + +G QAK+ I +G VKV+GAVETR+ K+V+ V+ Sbjct: 16 LAQYKLILISMIKLDQFLKLVGIAPTGGQAKLMIMDGDVKVNGAVETRRGRKLVSSDRVT 75 Query: 61 FAGHSVQV 68 AG +V Sbjct: 76 VAGQVFEV 83 >UniRef50_B3EA79 S4 domain protein YaaA n=9 Tax=Bacteria RepID=B3EA79_GEOLS Length = 72 Score = 88.7 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M+ +++L LKL SG +AKI I EGQ++V+GAVETR+ K+ G T++ Sbjct: 1 MSEKISIDTDYIKLDSFLKLANLVMSGGEAKIVIQEGQIRVNGAVETRRGRKLYPGDTIA 60 Query: 61 FAGHSVQVV 69 G S V+ Sbjct: 61 LTGSSSFVI 69 >UniRef50_A5F078 Putative uncharacterized protein n=27 Tax=Vibrionaceae RepID=A5F078_VIBC3 Length = 160 Score = 88.0 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 +EL +LK+ G +AK I+EG V V+G VETRKRCK+ G + F V+ Sbjct: 25 QPIELHKVLKIANAVSGGGEAKHVISEGYVFVNGDVETRKRCKVFDGDLIEFNQEFYLVI 84 >UniRef50_Q2JW54 S4 domain protein n=11 Tax=Bacteria RepID=Q2JW54_SYNJA Length = 93 Score = 88.0 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 35/60 (58%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 P ++L LKL G +G QAK I GQV+V+G VETR+ K+ G V+ AG QV Sbjct: 15 DPLIKLDQFLKLTGVVPTGGQAKQLIQAGQVRVNGEVETRRGRKLRLGDEVAVAGQVWQV 74 >UniRef50_Q1K491 RNA-binding S4 n=2 Tax=Desulfuromonadales RepID=Q1K491_DESAC Length = 70 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 44/66 (66%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 F L H ++EL +LLK+ G SG AK I +G+V+VDG VE+RKRCKI +GQ V F+ Sbjct: 4 VFDLEGHDYIELNNLLKVTGLCHSGGLAKRLIEDGEVRVDGQVESRKRCKIRSGQVVEFS 63 Query: 63 GHSVQV 68 G + V Sbjct: 64 GEQIDV 69 >UniRef50_D2NNX4 Uncharacterized conserved protein n=4 Tax=Bacteria RepID=D2NNX4_9MICC Length = 110 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L LKL E GAQA+ I G VKV+G +E + ++ G TV+F G Sbjct: 43 IFIRDDMIRLGQFLKLANLVEDGAQAREVIQHGLVKVNGDIEEARGKQLHPGDTVTFNGV 102 Query: 65 SVQV 68 +V+V Sbjct: 103 TVKV 106 >UniRef50_A4T9J8 RNA-binding S4 domain protein n=3 Tax=Actinomycetales RepID=A4T9J8_MYCGI Length = 80 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + L LKL +SGA AK IA+G+V V+G VE R+ ++ G V AGH Sbjct: 16 IRDDTIRLGQFLKLANLIDSGADAKTVIADGEVTVNGEVERRRGRQLHPGDVVGLAGHRA 75 Query: 67 QV 68 +V Sbjct: 76 RV 77 >UniRef50_Q1ZHE9 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHE9_9GAMM Length = 106 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 36/67 (53%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT + V L +LKL G +AK I+EG V ++G VETRKR K+ AG V F Sbjct: 9 ATLVEIREEPVALYKILKLGNLVSGGGEAKQIISEGYVSLNGEVETRKRKKVYAGDMVYF 68 Query: 62 AGHSVQV 68 +Q+ Sbjct: 69 NEQYLQI 75 >UniRef50_Q47Z52 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47Z52_COLP3 Length = 156 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 36/66 (54%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 H VELC LLK+ G +AK+ I+EG V ++G VE +KR K+ + F G Sbjct: 7 VIELNHQPVELCKLLKIANLVSGGGEAKVVISEGYVLLNGEVEYQKRKKVYHEDVIEFNG 66 Query: 64 HSVQVV 69 VQ++ Sbjct: 67 EVVQLL 72 >UniRef50_Q7NXD6 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NXD6_CHRVO Length = 71 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 37/70 (52%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M ++ LCDLLK SG AK IAEG V V+G VE RK CKI AGQ VS Sbjct: 1 MKETYQLSGEYIALCDLLKACNVCHSGGAAKHFIAEGNVSVNGQVELRKTCKIRAGQQVS 60 Query: 61 FAGHSVQVVA 70 G + V A Sbjct: 61 GDGFLIVVEA 70 >UniRef50_C9P6X8 Putative uncharacterized protein n=2 Tax=Vibrio RepID=C9P6X8_VIBME Length = 167 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + +EL +LKL G +AK IAEG V V+G +E RKR K+ G + F Sbjct: 18 VEVDNQPIELYKVLKLANAVSGGGEAKHVIAEGYVAVNGELEARKRRKLYDGDLIEFNQE 77 Query: 65 SVQVV 69 V+ Sbjct: 78 YYLVI 82 >UniRef50_C7NC97 S4 domain protein YaaA n=3 Tax=Bacteria RepID=C7NC97_LEPBD Length = 75 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 38/66 (57%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + ++L LLK ++ SG +AK+ I G+VKV+ AVETR+ KI G V FAG Sbjct: 8 VVINTEFIKLDQLLKWANFTGSGVEAKMFIQNGEVKVNDAVETRRGKKIYDGDVVEFAGE 67 Query: 65 SVQVVA 70 V V A Sbjct: 68 KVAVRA 73 >UniRef50_A1SRW3 Putative uncharacterized protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRW3_PSYIN Length = 128 Score = 84.5 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 35/67 (52%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT K L +LK G +AK+AI EG V ++G VET+KR KI AG +SF Sbjct: 8 ATLVEIKEEPTALYKILKFANLVSGGGEAKLAITEGYVFLNGQVETQKRKKIYAGDVISF 67 Query: 62 AGHSVQV 68 Q+ Sbjct: 68 NEQHYQI 74 >UniRef50_A0KYH4 RNA-binding S4 domain protein n=13 Tax=Gammaproteobacteria RepID=A0KYH4_SHESA Length = 76 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 43/62 (69%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 +EL +LK++G S +G +AK I EG V V+G VETRKR K+VAG VSF G SVQ+ Sbjct: 13 EDFIELYKVLKVQGMSNAGGEAKHVIDEGLVTVNGEVETRKRKKVVAGDIVSFNGESVQI 72 Query: 69 VA 70 +A Sbjct: 73 IA 74 >UniRef50_D2MMX5 S4 domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX5_9FIRM Length = 69 Score = 83.7 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 K ++ L + LK G ++G ++K+ I EG VKV+ VETR+ K+ G V++ G + Sbjct: 5 KQDYICLQNFLKFYGLVQTGGESKVVIQEGLVKVNQEVETRRGRKLYPGDEVTYQGKTFM 64 Query: 68 V 68 V Sbjct: 65 V 65 >UniRef50_B0RQY2 Putative uncharacterized protein n=15 Tax=Proteobacteria RepID=B0RQY2_XANCB Length = 131 Score = 83.7 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 35/63 (55%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 ++EL LLKL G ++SG Q K +A G V VDG E RK KI GQ V ++ Sbjct: 60 DGEYIELNQLLKLAGIADSGGQGKAIVASGAVSVDGVQELRKTAKIRPGQLVQLDDVEIR 119 Query: 68 VVA 70 V+A Sbjct: 120 VLA 122 >UniRef50_A1RL52 RNA-binding S4 domain protein n=13 Tax=Shewanella RepID=A1RL52_SHESW Length = 79 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 43/62 (69%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 +EL +LK++G + +G +AK I GQV V+G +ETRKR KI+AG VSF G +VQ+ Sbjct: 16 EDFIELYKVLKVQGMTNAGGEAKHFIDAGQVTVNGEIETRKRKKIIAGDMVSFNGVTVQI 75 Query: 69 VA 70 +A Sbjct: 76 IA 77 >UniRef50_Q2YZS1 Putative uncharacterized protein n=6 Tax=Bacteria RepID=Q2YZS1_9DELT Length = 81 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 K +EL +LK +SG +AK IA+G V+V+G VE RK KI++G + F Sbjct: 11 IVEIKEKSIELYKILKFVNIVQSGGEAKFVIADGLVRVNGEVEIRKGKKIISGDIIEFEK 70 Query: 64 HSVQV 68 Q+ Sbjct: 71 EKFQI 75 >UniRef50_B5IMQ5 S4 domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMQ5_9CHRO Length = 89 Score = 82.2 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 V+L LK +G + +G +AK+ I G V+V+G +ETR+ ++ G V G + V+ Sbjct: 25 FVKLDQFLKFQGLAATGGEAKLRIQRGDVRVNGVIETRRGRQLAPGDAVGIDGRELLVMP 84 >UniRef50_C1ZC96 Uncharacterized conserved protein n=4 Tax=Bacteria RepID=C1ZC96_PLALI Length = 72 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 P + L LK +GW +G AK+ I EG+V V+G V+ R+ K+ G V + G +V Sbjct: 2 PILTLDQFLKQQGWVATGGHAKLVIQEGEVIVNGEVDLRRGRKMRVGDVVEWNGERAEV 60 >UniRef50_B5ET37 Putative uncharacterized protein n=4 Tax=Vibrionaceae RepID=B5ET37_VIBFM Length = 135 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 +EL +LK+ G +AK I EG V V+G +E RKR K+ G + F V+ Sbjct: 19 QPIELYKVLKIANVVSGGGEAKHVIGEGYVGVNGELEQRKRRKMYDGDVIEFNEEYYVVI 78 >UniRef50_B2IY27 RNA-binding S4 domain protein n=6 Tax=Cyanobacteria RepID=B2IY27_NOSP7 Length = 84 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + ++L LKL G +G QAK+ I G V+V+G +ETR+ ++V G V+ G ++ Sbjct: 4 IRDNTIKLNQYLKLMGIVPTGGQAKLMIQGGDVQVNGMLETRRGRRLVPGDKVTIEGKTL 63 Query: 67 QV 68 +V Sbjct: 64 EV 65 >UniRef50_B1Y6F1 RNA-binding S4 domain protein n=32 Tax=Bacteria RepID=B1Y6F1_LEPCP Length = 74 Score = 81.4 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 40/63 (63%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + H+ L LLK G ++SG AK IA+G V++DG E RK CK+ AGQ V+FAG V Sbjct: 9 RGDHIGLDALLKATGLADSGGAAKALIAQGLVQIDGQTELRKTCKVRAGQCVTFAGSRVL 68 Query: 68 VVA 70 V A Sbjct: 69 VAA 71 >UniRef50_Q3A8P4 S4 domain protein n=9 Tax=Bacteria RepID=Q3A8P4_CARHZ Length = 73 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 ++EL LLK + +G QAK I G V V+G VETR++ KI G V AG V +V Sbjct: 9 EYIELDSLLKWANIAMTGGQAKQMIKSGMVLVNGVVETRRKKKIYPGDRVEIAGGPVLIV 68 >UniRef50_B4AXG0 RNA-binding S4 domain protein n=2 Tax=Bacteria RepID=B4AXG0_9CHRO Length = 70 Score = 81.0 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 37/58 (63%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LK +G ++G +AKI I G+V V+G +ETR+ K+V+G V+ G + QV Sbjct: 11 TIKLAQFLKWQGLVQTGGEAKIRIQGGEVLVNGTLETRRGRKLVSGDRVTIDGKTYQV 68 >UniRef50_A6GUC8 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=A6GUC8_9BURK Length = 84 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + K P VEL +LK +GW SG +AK IA+G V V+G +ET+KR KIV G + Sbjct: 15 MNEVIINKEP-VELYKILKFQGWLSSGGEAKNVIADGHVLVNGQIETQKRKKIVGGDVIE 73 Query: 61 FAGHSVQV 68 F G V Sbjct: 74 FDGVKYTV 81 >UniRef50_Q46KV3 RNA-binding S4 n=6 Tax=Cyanobacteria RepID=Q46KV3_PROMT Length = 72 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LK G ++G +AK+ I G++ V+G VETR+ K++ G +SFA + V Sbjct: 1 MKLDQFLKFMGIVQTGGEAKMIIKSGKISVNGMVETRRGRKLIDGDQISFANETYIV 57 >UniRef50_Q7MEF9 Uncharacterized conserved protein n=29 Tax=Proteobacteria RepID=Q7MEF9_VIBVY Length = 184 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 +EL + K+ G +AK IAEG V V+G +ETRKR K+ G F VV Sbjct: 33 QPIELYKVFKIANLVSGGGEAKHVIAEGYVAVNGELETRKRRKMYDGDFFEFNQEYYVVV 92 >UniRef50_Q1IXU2 RNA-binding S4 n=4 Tax=Bacteria RepID=Q1IXU2_DEIGD Length = 66 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + ++L D LKL G ++G +AK + G+V+V+G +ETR+R K+ G V +AG V Sbjct: 3 EERDTIDLQDFLKLRGLVDTGGEAKFRVQGGEVQVNGEIETRRRKKLRRGDIVEYAGERV 62 Query: 67 QV 68 +V Sbjct: 63 RV 64 >UniRef50_Q39ZH7 RNA-binding S4 n=5 Tax=Bacteria RepID=Q39ZH7_GEOMG Length = 65 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + +++L LK E SG +AKI IA+G+V+V+G VETR+ K+ G V G ++ Sbjct: 3 IETEYIKLDSFLKAENIVASGGEAKIIIADGEVRVNGEVETRRGRKLRVGDRVEAGGETL 62 Query: 67 QV 68 V Sbjct: 63 VV 64 >UniRef50_C0QLP4 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLP4_DESAH Length = 111 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + VEL +LK E SG +AK I +G V ++G VETRKR KI AG + F + Sbjct: 48 IEREPVELYKILKFENLVMSGGEAKHVITQGMVTLNGQVETRKRKKIFAGDVILFGQEVL 107 Query: 67 QV 68 ++ Sbjct: 108 KI 109 >UniRef50_A3DHZ6 RNA-binding S4 n=22 Tax=Bacteria RepID=A3DHZ6_CLOTH Length = 68 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 ++L LK G++AK+ I G VKV+G VE R+ K+ G V Sbjct: 6 INTEFIKLDQFLKWTKTVSMGSEAKLMIRSGLVKVNGEVELRRGRKLRTGDIVEINDKKF 65 Query: 67 QVV 69 Q+V Sbjct: 66 QIV 68 >UniRef50_A3NBX1 Conserved domain protein n=33 Tax=Burkholderia RepID=A3NBX1_BURP6 Length = 73 Score = 78.3 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 38/60 (63%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 VEL +LLKL G ++SG AK+ +A G VKVDGAVE RK CK+ AGQ V + V Sbjct: 10 GEFVELHNLLKLTGLADSGGSAKMIVASGAVKVDGAVELRKTCKVRAGQVVLLGDTRIAV 69 >UniRef50_A2BWE9 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A2BWE9_PROM5 Length = 82 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + ++L LK + SG +AKI I GQVKV+G +ET++ K+V G V F + + Sbjct: 22 YKTMKLDQFLKWHNFVSSGGEAKIFIKSGQVKVNGEIETKRGRKLVKGDKVMFLKNEL 79 >UniRef50_C4ZNZ6 RNA-binding S4 domain protein n=4 Tax=Bacteria RepID=C4ZNZ6_THASP Length = 74 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 42/69 (60%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MA + +++L LLK G ESG A A+ G VKVDG E+RKR K+ GQ VS Sbjct: 1 MAIRFEVRGEYIQLDQLLKAAGLVESGGAAHAAVENGLVKVDGKPESRKRAKLRPGQRVS 60 Query: 61 FAGHSVQVV 69 FAG +V++V Sbjct: 61 FAGEAVELV 69 >UniRef50_D1YBL0 S4 domain protein n=3 Tax=Propionibacterium acnes RepID=D1YBL0_PROAC Length = 76 Score = 78.0 bits (191), Expect = 9e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 6 LGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQ--TVSFAG 63 + + L LK +E+G QA+ IA G V V+G VETR+ ++ G V+ G Sbjct: 1 MHDDQMIRLGQYLKFANLAETGGQARELIASGMVSVNGEVETRRGRQLHPGDEVRVTNGG 60 Query: 64 HSV 66 +V Sbjct: 61 QTV 63 >UniRef50_C5REZ0 S4 domain protein YaaA n=2 Tax=Bacteria RepID=C5REZ0_CLOCL Length = 85 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + ++L +KL SG++AK+ I +V V+G +E R+ K+ G V F G Sbjct: 21 IVIETEFIKLDSFMKLAAIVSSGSEAKMIIKSQEVTVNGEIEERRGKKLYKGDVVEFNGE 80 Query: 65 SVQVV 69 S +VV Sbjct: 81 SYKVV 85 >UniRef50_A0JUK2 RNA-binding S4 domain protein n=5 Tax=Bacteria RepID=A0JUK2_ARTS2 Length = 92 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + L LLKL E G +A I G VKV+G ++ R+ ++ G TV+ G +V Sbjct: 25 IRDDMIRLGQLLKLASLVEDGVEATELIRNGLVKVNGEIDDRRGRQLHHGDTVTVNGRTV 84 Query: 67 QVV 69 +++ Sbjct: 85 RIL 87 >UniRef50_C5C9J3 Uncharacterized conserved protein n=33 Tax=Bacteria RepID=C5C9J3_MICLC Length = 80 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + L LKL + GA A+ + +G V V+GAVETR+ ++ G V FAG + Sbjct: 14 IRDESIRLGQALKLASLVDDGAMARDVVTDGLVTVNGAVETRRGAQLHDGDVVEFAGEAF 73 Query: 67 QVVA 70 V A Sbjct: 74 VVQA 77 >UniRef50_B4WNT6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNT6_9SYNE Length = 66 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LK+ SG +AK+ I G+V V+G +E R+ K+ V+ S V Sbjct: 4 DFIKLDQFLKIINVVRSGGEAKLIIRSGEVLVNGEMELRRGRKLYDEDIVTIEDTSFTV 62 >UniRef50_D1VQP8 RNA-binding S4 domain protein n=7 Tax=Actinomycetales RepID=D1VQP8_9ACTO Length = 68 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + L LKL ESG K +AEG VKV+ VETR+ ++ G V+ A SV Sbjct: 6 IRDEMIRLGQFLKLADLVESGGDLKPLLAEGLVKVNNEVETRRGRQLSRGDVVTLADRSV 65 Query: 67 QV 68 +V Sbjct: 66 RV 67 >UniRef50_D1AW62 RNA-binding S4 domain protein n=2 Tax=Bacteria RepID=D1AW62_STRM9 Length = 67 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 +++L LLK E+G+ AK I EG+V VD VE R+ KI G V F G V Sbjct: 5 INTEYIKLDQLLKYANLVENGSSAKEMILEGRVLVDNEVEVRRGRKIYRGMIVEFEGERV 64 Query: 67 QV 68 +V Sbjct: 65 EV 66 >UniRef50_C5V8W2 S4 domain protein n=10 Tax=Corynebacterium RepID=C5V8W2_9CORY Length = 96 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L +KL E+G AK IA+G+V V+GA +TR+ + G V QV Sbjct: 11 ETIKLGQFIKLASLVETGGAAKEVIADGRVTVNGATDTRRGKTLRDGDVVCVDDMCAQV 69 >UniRef50_C0W7H4 Putative uncharacterized protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7H4_9ACTO Length = 102 Score = 76.0 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 L + ++L LKL G E GA+A+IAI G V+V+G VETR+ + AG V Sbjct: 20 VLVRGE-IKLGQFLKLAGLVEDGAEARIAIQSGDVRVNGEVETRRGHHLAAGDVVEVE 76 >UniRef50_C1D9I9 Putative RNA-binding protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9I9_LARHH Length = 77 Score = 75.6 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 39/70 (55%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M V LC+LLK+ G +SG K +A G V+VDG E RK CKI AGQTVS Sbjct: 6 MNEVYQLDREFVPLCNLLKMCGVVDSGGAGKQLVATGVVEVDGQTELRKTCKIRAGQTVS 65 Query: 61 FAGHSVQVVA 70 G +++V Sbjct: 66 GPGFTIRVEG 75 >UniRef50_Q30QF2 RNA-binding S4 n=2 Tax=Campylobacterales RepID=Q30QF2_SULDN Length = 67 Score = 75.6 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 K ++EL LLK+ +SGA+AK+ +A+G V+ +G +E RKR KI G + A Sbjct: 3 YELKDEYIELFKLLKVLDLVDSGAEAKLIVADGHVRRNGEIELRKRAKIRQGDVIEVADV 62 Query: 65 SVQV 68 +++V Sbjct: 63 TIEV 66 >UniRef50_UPI0001C36FBF S4 domain-containing protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36FBF Length = 69 Score = 75.3 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 34/68 (50%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MA ++L LLK +G +AK I +G+V V+G V T + KI G TVS Sbjct: 1 MAEKIKISTEFIKLDALLKFASLVGTGGEAKARIQDGEVLVNGEVCTMRGKKIRPGDTVS 60 Query: 61 FAGHSVQV 68 G+ V V Sbjct: 61 IDGNEVIV 68 >UniRef50_C7H1W3 S4 domain protein n=5 Tax=Bacteria RepID=C7H1W3_9FIRM Length = 71 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 L ++L LLK G E+G +AK + G VKV+G V T + K AG V G Sbjct: 4 ILIHTEFIKLDALLKYAGLCETGGEAKELVQGGAVKVNGEVCTMRGKKCRAGDVVELDGQ 63 Query: 65 SVQV 68 +V+V Sbjct: 64 TVEV 67 >UniRef50_B0MRG2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRG2_9FIRM Length = 74 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 29/61 (47%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 K P ++L LK G E+G +AK AI G V V+G + T + KI G V Sbjct: 10 VKPPFIKLEQFLKFSGACETGGEAKNAIQGGYVHVNGEICTMRGKKIADGDIVELDEQQY 69 Query: 67 Q 67 + Sbjct: 70 K 70 >UniRef50_A2SHW4 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SHW4_METPP Length = 83 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 38/63 (60%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + + L LLK G ++SG AK I GQV+VDG E R+ K+ AGQ V+ +G V+ Sbjct: 14 RGEFITLDALLKATGLADSGGAAKQLIQSGQVQVDGREELRRGAKLRAGQVVAVSGARVR 73 Query: 68 VVA 70 ++A Sbjct: 74 LLA 76 >UniRef50_C6XTU3 RNA-binding S4 domain protein n=4 Tax=Sphingobacteriaceae RepID=C6XTU3_PEDHD Length = 68 Score = 74.9 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M F L + L LLK +SG +A+ + +G VK +G V+ RKR K+ G + Sbjct: 1 MIKFKLE-GEFIPLIQLLKATALVQSGGEAQTVVEDGLVKYNGTVDYRKRLKVRVGDVID 59 Query: 61 FAGHSVQVV 69 F G + V+ Sbjct: 60 FMGQKITVI 68 >UniRef50_B8I3R4 RNA-binding S4 domain protein n=15 Tax=Bacteria RepID=B8I3R4_CLOCE Length = 71 Score = 74.9 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 ++L LK G ++GA AK I +G VKV+G VE ++ K+ G TV F Sbjct: 6 INTEFIKLDQFLKWVGACDNGALAKGFIVDGFVKVNGNVELQRGKKLRNGDTVEFNQKQY 65 Query: 67 QVV 69 +V+ Sbjct: 66 KVI 68 >UniRef50_A6SVF2 Uncharacterized conserved protein n=8 Tax=Burkholderiales RepID=A6SVF2_JANMA Length = 73 Score = 74.9 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 37/63 (58%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 VEL LLKL G +SG K+ +A G+VKVDG E RK CKI AGQ V+ ++ Sbjct: 9 NDEFVELNQLLKLVGICDSGGAGKVLVASGKVKVDGQTELRKTCKIRAGQVVALGDVRIK 68 Query: 68 VVA 70 V A Sbjct: 69 VRA 71 >UniRef50_A9KPP3 RNA-binding S4 domain protein n=10 Tax=Bacteria RepID=A9KPP3_CLOPH Length = 71 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + ++L LK G +SG +AK I EG VKV+G VE ++ KI G ++ F Sbjct: 4 IILREEFIKLGQALKAAGLVDSGVEAKDVITEGLVKVNGVVEYQRGKKIHGGDSIEFNNE 63 Query: 65 SVQVV 69 VQ+V Sbjct: 64 IVQIV 68 >UniRef50_D1AIS8 RNA-binding S4 domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIS8_SEBTE Length = 70 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 K ++L LLK G G +A+ I EG V+V+G E R+ KI + G Sbjct: 4 VEIKTEFIKLDQLLKWAGMVGDGGEARYHILEGNVRVNGETEKRRGKKIYENDIIELDGE 63 Query: 65 SVQVV 69 +++V Sbjct: 64 KIKIV 68 >UniRef50_C8P206 Conserved domain protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P206_ERYRH Length = 73 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + ++ L LK+ + SG +AK I ++V+G E R+ K+ G V G+ + Sbjct: 7 ETQYITLGQFLKVADYVNSGGEAKHLIHSFSIQVNGEEENRRGRKLYPGDVVVINGNKHE 66 Query: 68 V 68 + Sbjct: 67 I 67 >UniRef50_B9Y5K4 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5K4_9FIRM Length = 100 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 T + L LLK+ W SG +AK+A+ E ++ V+G E R+ K+ G +S Sbjct: 33 TMIKIDTEFITLGQLLKMTDWISSGGEAKLAVKELKITVNGEKEDRRGRKLYPGDQISIE 92 Query: 63 GHSVQV 68 + Sbjct: 93 DKRYTI 98 >UniRef50_B2GKW6 Putative uncharacterized protein n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GKW6_KOCRD Length = 78 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + + L LKL +E G AK ++EG V V+GAVETR+ ++ G + Sbjct: 11 IRDQMIRLGQALKLANLAEDGHHAKTLVSEGAVHVNGAVETRRGAQLHPGDVLEV 65 >UniRef50_A7FPF2 S4 domain protein n=12 Tax=Bacteria RepID=A7FPF2_CLOB1 Length = 68 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 ++L LK G + G++AK I G+VKV+G +E R+ K+ + F + Sbjct: 6 INSEIIKLDSFLKWSGATTLGSEAKFFIQNGEVKVNGEIEKRRGRKLKIDDLIEFNNETY 65 Query: 67 QVV 69 +++ Sbjct: 66 KII 68 >UniRef50_C7R3K8 RNA-binding S4 domain protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3K8_JONDD Length = 84 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + + L LKL +ESGA A+ I + V V+G +E R+ +++ G V+ Sbjct: 9 LVTIRDTMIRLGQFLKLASLAESGAHARDLIEDDNVYVNGELEKRRGRQLIHGDIVTV 66 >UniRef50_B2THB6 S4 domain protein YaaA n=3 Tax=Clostridium botulinum RepID=B2THB6_CLOBB Length = 68 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 ++L LK G + G++AKI I EG +KV+G + ++ K+ AG + F Sbjct: 6 INTEIIKLDAFLKWSGIASLGSEAKIYIQEGLIKVNGEICLQRGKKLKAGDIIEFEDEKF 65 Query: 67 QVV 69 ++V Sbjct: 66 EIV 68 >UniRef50_Q05Y91 RNA-binding S4 n=3 Tax=Bacteria RepID=Q05Y91_9SYNE Length = 60 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L LK +GW +G +AK+ I G+V+V+G+VETR+ ++ V+ +V Sbjct: 1 MRLDQFLKWQGWVATGGEAKMRIQAGEVEVNGSVETRRGRQLQLADRVTLGSDQAEV 57 >UniRef50_C6WCR0 RNA-binding S4 domain protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCR0_ACTMD Length = 91 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + L LKL G +E GA A+ + EG+V V+G E+R+ ++ G V+ G Sbjct: 6 VEIADDMIRLGQFLKLAGLAEHGAHARELVEEGEVTVNGRPESRRGAQLKNGDVVAVDGE 65 Query: 65 SVQVVA 70 ++VA Sbjct: 66 KARLVA 71 >UniRef50_D0BT73 Putative uncharacterized protein n=9 Tax=Fusobacterium RepID=D0BT73_9FUSO Length = 71 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LK +SG+QAK I +G+VKV+ VETR+ KI V V Sbjct: 12 EFIKLDQFLKWLAVVDSGSQAKQVILDGKVKVNDEVETRRGRKIYPEYRVEIFDRIYVV 70 >UniRef50_A4J0F2 RNA-binding S4 domain protein n=3 Tax=Bacteria RepID=A4J0F2_DESRM Length = 70 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 26/52 (50%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + L LK + SG ++KI I G VKV+G E R+ K+ + V G Sbjct: 11 IRLDQFLKWANITGSGGESKILIQSGHVKVNGITEIRRGKKLQSNDIVEVDG 62 >UniRef50_B7CCH6 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCH6_9FIRM Length = 67 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + ++ L LLK SG QAK +A +V V+G E R+ KI G V G ++ Sbjct: 6 RDEYITLAQLLKACDVVYSGGQAKEYLASMEVFVNGVNENRRGKKIYHGDIVETNGIRIE 65 Query: 68 V 68 V Sbjct: 66 V 66 >UniRef50_Q3IFL5 Putative uncharacterized protein n=3 Tax=Alteromonadales RepID=Q3IFL5_PSEHT Length = 127 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 31/55 (56%) Query: 14 LCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 LC LLK+ E G QAK IAEG V V+ + T KR K+ +G + F G Q+ Sbjct: 17 LCKLLKVLNLVEGGGQAKNLIAEGYVGVNHEICTIKRKKLYSGDILEFDGELFQL 71 >UniRef50_Q0IAV4 S4 domain protein n=14 Tax=Cyanobacteria RepID=Q0IAV4_SYNS3 Length = 74 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L LK GW +G +AK+ I G+V V+G +E R+ ++ AG V S +V Sbjct: 10 MRLDQFLKWMGWVATGGEAKLRIQGGEVLVNGDLEQRRGRQLKAGDRVQMGVDSAEV 66 >UniRef50_Q47ZU6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZU6_COLP3 Length = 124 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 +EL LLK+ G +AK I+EG++ V+ VE +KR KI G + F G +++V Sbjct: 12 EPIELYKLLKISNIVGDG-EAKTLISEGKILVNKKVEVQKRKKIRRGDVIDFDGKTIEV 69 >UniRef50_A4FA99 RNA-binding S4 n=8 Tax=Bacteria RepID=A4FA99_SACEN Length = 71 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 37/66 (56%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L LLKL G +E GA AK + EG+V+V+ AVETR+ ++ G VS Sbjct: 4 VEIRDGSIRLGQLLKLAGVAEHGADAKALLEEGEVRVNDAVETRRGRQVGPGDLVSLGED 63 Query: 65 SVQVVA 70 +QVV Sbjct: 64 VIQVVG 69 >UniRef50_P05650 Uncharacterized protein yaaA n=6 Tax=Bacillaceae RepID=YAAA_BACSU Length = 71 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MA + L LKL +SG AK ++E +V V+ + R+ K+ G V Sbjct: 1 MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVNDEPDNRRGRKLYVGDVVE 60 Query: 61 FAGH-SVQVV 69 G S QVV Sbjct: 61 IEGFGSFQVV 70 >UniRef50_UPI000196B722 hypothetical protein CATMIT_00450 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B722 Length = 77 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 L ++ L +KL G ++SG +AKI I EG V V+G V+ R+ K+ G Sbjct: 8 VLIHTEYITLGQAMKLCGEAQSGIEAKIMIQEGHVLVNGEVDRRRGKKLRDGDVFEVDRR 67 Query: 65 SVQV 68 + Sbjct: 68 QYVI 71 >UniRef50_A7BD09 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD09_9ACTO Length = 76 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M+T ++ ++L +KL +E GAQA+ I G V V+G VETR+ + AG V Sbjct: 1 MSTPTIPVRGEIKLGQFIKLASLAEDGAQARELIQAGDVTVNGEVETRRGHHLSAGDLVE 60 Query: 61 FA 62 Sbjct: 61 VD 62 >UniRef50_B5YFF2 Conserved domain protein n=14 Tax=Bacteria RepID=B5YFF2_DICT6 Length = 71 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 28/60 (46%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 + L LK E+G QAK I G+VKV+G +E + K+ G V G VV Sbjct: 9 ESITLGQFLKWCRVVETGGQAKNLILAGRVKVNGEIELHRSRKLKNGDVVEVDGEKYVVV 68 >UniRef50_Q02WH9 S4-like RNA-binding protein n=6 Tax=Bacilli RepID=Q02WH9_LACLS Length = 120 Score = 67.9 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAE--GQVKVDGAVETRKRCKIVAGQT 58 M + L ++ L +LK G +G QAKI +AE G + +G VE R+ K+ G Sbjct: 1 MKKYILF-EEYIALGQVLKELGLISTGGQAKIFLAENEGNIFYNGEVENRRGKKLRDGDL 59 Query: 59 VSFAGHSVQV 68 + F ++V Sbjct: 60 LEFPTFDLKV 69 >UniRef50_A5VHF5 S4 region, YaaA n=8 Tax=Lactobacillus reuteri RepID=A5VHF5_LACRD Length = 73 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 L P + L LLK EG +G AK + E V V+ + R+ K+ + H Sbjct: 6 VLIDSPFITLGQLLKEEGIIPTGGAAKWFLKENTVLVNDEPDDRRGRKLYPEDKIQIPDH 65 Query: 65 SVQVV 69 + V+ Sbjct: 66 QLLVI 70 >UniRef50_Q04CX3 S4-like RNA binding protein n=23 Tax=Lactobacillus RepID=Q04CX3_LACDB Length = 77 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L LK E SG QAK + + V V+G E R+ K+ G ++ AG Sbjct: 12 INGEFITLGQFLKDECIVSSGGQAKWYLKDSPVLVNGDKEDRRGRKLYPGDRLTVAGKEY 71 Query: 67 QVV 69 ++V Sbjct: 72 ELV 74 >UniRef50_Q040E7 S4-like RNA binding protein n=9 Tax=Bacilli RepID=Q040E7_LEUMM Length = 148 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M T ++ L LLK E SG QAK + + V ++G E R+ K+ + Sbjct: 1 MTTSVRITTEYITLTQLLKEENIISSGGQAKYYLMDFPVLLNGETENRRGKKLYDHDEIV 60 Query: 61 FAGHSVQV 68 G + + Sbjct: 61 IDGETYTI 68 >UniRef50_C4FYE0 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FYE0_9FIRM Length = 76 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + + L +LK EG +G QAK ++E +V V+ ETR+ K+ G V+ Sbjct: 8 IESDFITLGQVLKNEGIIATGGQAKWFLSEEKVLVNQEQETRRGRKLYPGDQVTI 62 >UniRef50_C4V1P6 Putative uncharacterized protein n=2 Tax=Selenomonas RepID=C4V1P6_9FIRM Length = 77 Score = 65.2 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + ++L LKL G SG + + + EG + + ET +R K+V G ++ Sbjct: 3 IEIQTDMIQLDQFLKLAGAVSSGGEVRALLTEGMILRNNVPETARRRKLVPGDVITIN 60 >UniRef50_C5R9Y4 RNA-binding S4 protein n=2 Tax=Lactobacillales RepID=C5R9Y4_WEIPA Length = 77 Score = 65.2 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MAT + P + L LLK E +G QAK + E V V+ + R+ K+ G ++ Sbjct: 1 MATEVQIQAPFITLGQLLKEESIIATGGQAKWFLRENTVLVNEEPDDRRGRKLYPGDVIA 60 Query: 61 F-AGHSVQV 68 +G + Sbjct: 61 VPSGERFVI 69 >UniRef50_Q03UE2 S4-like RNA-binding protein n=88 Tax=Bacilli RepID=Q03UE2_LACBA Length = 75 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M L + P++ L LLK E +G QAK + E V ++ + R+ K+ G TV+ Sbjct: 1 MKKEVLIETPYITLGQLLKEESVISTGGQAKWYLQENTVNINDEPDNRRGRKLYPGDTVA 60 Query: 61 FAG 63 Sbjct: 61 VPE 63 >UniRef50_C9RXR9 S4 domain protein YaaA n=22 Tax=Bacilli RepID=C9RXR9_GEOSY Length = 76 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + L LLKL ++G AK + E V V+G E R+ K+ G + Sbjct: 4 MEQRVTITTETITLGQLLKLVRLIDTGGAAKWFLQEHHVLVNGERENRRGRKLRDGDRID 63 Query: 61 FAGHSVQVV 69 VV Sbjct: 64 IEPFGTFVV 72 >UniRef50_Q9RCA0 BH0003 protein n=2 Tax=Bacillus RepID=Q9RCA0_BACHD Length = 73 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 ++ L LLK G ++G AK +AE +V V+G E R+ K+ +G +V+ A +V Sbjct: 11 YITLGQLLKEVGVIDTGGMAKWYLAEHEVLVNGESEDRRGKKLFSGDSVTLADGTV 66 >UniRef50_C8VV99 RNA-binding S4 domain protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VV99_DESAS Length = 71 Score = 63.7 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L LK +G QAKI I G VKV+ ++E ++ + G V V Sbjct: 10 PIRLDQFLKWATIVSTGGQAKILITSGGVKVNQSIEIKRGRNLKNGDIVQVGDILYHV 67 >UniRef50_D0BMB1 S4 domain-containing protein YaaA n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMB1_9LACT Length = 92 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + L LK +G QAK + E V VDG +E R+ K+ V Sbjct: 12 MTKIVTITEEFITLGQFLKHIDVITTGGQAKWYLQETVVFVDGEIENRRGRKLYDKTRVE 71 Query: 61 FAGHSVQVV 69 + VV Sbjct: 72 IPEEGIFVV 80 >UniRef50_C7XXJ9 S4 domain-containing protein YaaA n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XXJ9_9LACO Length = 75 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + + L LLK EG +G AK + E QVK++G ++ R+ K+ V Sbjct: 4 SKVFQIDRDFITLGQLLKEEGIIPTGGAAKWFLKEHQVKINGDLDDRRGKKLYPNDQVEI 63 Query: 62 AG 63 G Sbjct: 64 IG 65 >UniRef50_C8PB15 Putative uncharacterized protein n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PB15_9LACO Length = 81 Score = 62.2 bits (150), Expect = 6e-09, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%) Query: 6 LGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + + L LK E SG QAK + E V ++G +E R+ KI G + Sbjct: 16 VINGEFITLAQFLKEESIISSGGQAKWYLNENPVMLNGVLENRRGKKIHPGDQIVIN 72 >UniRef50_A8MEA2 RNA-binding S4 domain protein n=2 Tax=Alkaliphilus RepID=A8MEA2_ALKOO Length = 71 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + +++L LLKL SG AK+ I G+VKV+ ++ KI G V F + Sbjct: 9 IEGEYIKLDQLLKLAEVVGSGGHAKLVILNGEVKVNEQTIVQRGKKIRVGDKVLFQDIEI 68 Query: 67 QV 68 +V Sbjct: 69 EV 70 >UniRef50_D1BQ79 RNA-binding S4 domain protein n=3 Tax=Veillonella RepID=D1BQ79_VEIPT Length = 77 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 ++++ LLKLEG E+G Q K I EG + ++G V T KR K G +S G V ++ Sbjct: 12 EYIQIDQLLKLEGIIETGGQIKSFIDEGILTLNGQVVTEKRKKCRVGDVISCEGLDVDLI 71 >UniRef50_C2EAX7 RNA-binding S4 protein n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EAX7_9LACO Length = 81 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAE--GQVKVDGAVETRKRCKIVAGQTVSFAGHS 65 K P + L LLK+E SG QAK + E ++ V+G E R+ K+ G V A Sbjct: 14 KTPCITLGQLLKIENIVSSGGQAKYFLEEHADEIFVNGEHENRRGKKLYPGDEVVVADQG 73 Query: 66 VQVV 69 V+ Sbjct: 74 KFVM 77 >UniRef50_C9KQB0 Conserved domain protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQB0_9FIRM Length = 79 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 ++L LK G S + K IAE ++K +G E+ +R ++ G + G Sbjct: 8 IDTETIQLDQFLKWAGVLGSCGETKALIAERRIKRNGETESARRRQLHDGDVIEVEG 64 >UniRef50_B2A2Y8 S4-like RNA binding protein n=2 Tax=Firmicutes RepID=B2A2Y8_NATTJ Length = 73 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 ++ L LLK +G + K + E ++V+G ++ K+ G V+ Sbjct: 6 VEINSEYITLGQLLKYVNIVATGGEVKHFLKEEDIEVNGEKTEQRGKKLYPGDIVNLKDQ 65 Query: 65 S 65 Sbjct: 66 E 66 >UniRef50_D2SGH5 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SGH5_9ACTO Length = 74 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 27/55 (49%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + L LLKL +GAQ K + G V+V+G E R+ ++ G VS G Sbjct: 13 EESIRLGQLLKLVDAVPTGAQVKDVLLTGTVRVNGEPEERRGRQLRKGDVVSVEG 67 >UniRef50_A4VYF8 Uncharacterized conserved protein n=68 Tax=Streptococcus RepID=A4VYF8_STRSY Length = 127 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++ L LLK G SG K + E + +G E R+ KI G ++ H+ + Sbjct: 7 DDYITLQALLKTTGILHSGGAIKGFLEENTILFNGEDEKRRGKKIRVGDVITLPDHNTSI 66 >UniRef50_B1AI65 S4 domain protein YaaA n=15 Tax=Ureaplasma RepID=B1AI65_UREP2 Length = 72 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 +V L LK+ G +G QAK + E +V VD +E R+ K+ + Q+V Sbjct: 9 EYVTLNQFLKIAGLINNGGQAKFWLLENKVMVDEKIENRRGRKLYDQMIIKIKNQLYQIV 68 >UniRef50_Q04HR4 S4-like RNA binding protein n=47 Tax=Lactobacillales RepID=Q04HR4_OENOB Length = 73 Score = 59.5 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQ--VKVDGAVETRKRCKIVAGQTVSF 61 + L LLK+E SG AK + E V+G E R+ K+ G V Sbjct: 6 INTEFITLGQLLKIEDIVSSGGSAKFFLKENANSFFVNGESENRRGRKLYPGDLVKI 62 >UniRef50_Q6KIT5 Expressed protein n=1 Tax=Mycoplasma mobile RepID=Q6KIT5_MYCMO Length = 68 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 K + L LK+ +G ++K I E V ++G + KI V Sbjct: 4 IEIKDDFITLSQFLKISSLISTGGESKNFIIENNVNLNGKRIFERNKKIYKNDIVEINNK 63 Query: 65 SVQVV 69 Q++ Sbjct: 64 KYQII 68 >UniRef50_B5Y6P2 Conserved domain protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6P2_COPPD Length = 77 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 +EL LK+ + +G +AK I +G V V+G VETR+ K+ V V Sbjct: 9 MIELQQFLKIV-LNVTGGEAKHIIQDGLVCVNGVVETRRSRKLAQEDVVEVNLEEV 63 >UniRef50_C7NEZ0 Uncharacterized conserved protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NEZ0_KYTSD Length = 76 Score = 57.9 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTV 59 + L +LKL + GA A+ I G V +D V T++ K+ GQ V Sbjct: 12 IADEFITLGQVLKLANVVDDGAIAREVIQAGDVTLDAEVCTQRGRKVRPGQVV 64 >UniRef50_C0VZC3 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZC3_9ACTO Length = 80 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 26/52 (50%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + L LLKL E G +A+ AI G V +D T++ ++ GQ VS Sbjct: 14 TIRLGQLLKLANLVEDGGEARAAIQGGFVYIDDEQCTQRGKQLQDGQIVSLD 65 >UniRef50_C5BW46 RNA-binding S4 domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BW46_BEUC1 Length = 77 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + + L LLKL G +E GAQA+ +A+ V+VDG E R+ ++ G V+ Sbjct: 11 IRDESIRLGQLLKLAGIAEDGAQARELLADDAVQVDGVAENRRGAQVHRGALVAVD 66 >UniRef50_D0WQU2 RNA-binding S4 n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQU2_9ACTO Length = 76 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF---AGHSVQ 67 + L +K + SGA+A + G++ V+G VETR+ ++ G V+ G ++ Sbjct: 9 PIRLGQFVKYASLAGSGAEAAELVRAGEIVVNGVVETRRGHRLSDGDVVAMDLPNGRRIE 68 Query: 68 VV 69 V Sbjct: 69 VR 70 >UniRef50_A0AEJ0 Complete genome n=15 Tax=Listeria RepID=A0AEJ0_LISW6 Length = 94 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 +A V L LL++ +G AK ++E + ++G + R+ K+ G + Sbjct: 23 LAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGEQDNRRGKKLRNGDVIL 82 Query: 61 FAG 63 G Sbjct: 83 VPG 85 >UniRef50_A5INP4 S4 region, YaaA n=62 Tax=Staphylococcus RepID=A5INP4_STAA9 Length = 78 Score = 55.2 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + L LK EG ESG QAK + + +V ++G ETR+ K+ + Sbjct: 11 INLGQFLKTEGIIESGGQAKWFLQDVEVLINGVRETRRGKKLEHQDRIDIPE 62 >UniRef50_C9LP64 Conserved domain protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LP64_9FIRM Length = 72 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 +++L LK E SG + I ++ ++G + KR KI G +S G Sbjct: 4 IEIYGDYIQLDQFLKKENIISSGGETGDFIKNHEIFLNGIIIQEKRKKIRLGDDLSLDGE 63 Query: 65 SVQVV 69 +++ Sbjct: 64 VYKII 68 >UniRef50_C7REZ7 S4 domain-containing protein n=5 Tax=Anaerococcus RepID=C7REZ7_ANAPD Length = 68 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + ++L DLLK +G AK+ I E V ++G+ K+ G TV F S+ Sbjct: 7 ESEEIKLKDLLKATNIIPTGGLAKVIIKEEGVLLNGSPCFVAGKKLHKGDTVEFDDFSIT 66 Query: 68 VV 69 +V Sbjct: 67 IV 68 >UniRef50_D1J7E3 Putative uncharacterized protein n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7E3_MYCHP Length = 70 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 ++L LK +G AK + ++ ++G + + KI G TV + Sbjct: 3 IEITGEFIKLSQFLKKIDVCPTGGMAKYFVQVHRILINGNLANGRNAKIYPGDTVWIDDN 62 Query: 65 SVQVVA 70 + Sbjct: 63 VYLIKG 68 >UniRef50_C5J5G0 Putative uncharacterized protein MCJ_000030 n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J5G0_MYCCR Length = 72 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + ++ + LLK E + SG ++K + E VK++G T + K+ V + Sbjct: 5 IRGSYITIGQLLKKENFVNSGGESKFFLLENVVKINGIRVTTRSTKVRIDDFVWINDELI 64 Query: 67 QVVA 70 ++ A Sbjct: 65 EIKA 68 >UniRef50_Q4A746 Putative uncharacterized protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A746_MYCS5 Length = 71 Score = 51.8 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAE--GQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 +++L LLK +SG AK + +V ++G T + K+ G + Sbjct: 7 GEYIKLSQLLKKIDEVDSGGTAKFFLQNKINKVLINGKQTTERNKKVYPGDIIWINNIVH 66 Query: 67 QV 68 +V Sbjct: 67 KV 68 >UniRef50_B3PLR9 Putative uncharacterized protein n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PLR9_MYCA5 Length = 76 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 ++L LLK SG +AK + +K++G + + K+ G + + Sbjct: 3 IEIYGDSIKLSQLLKKLDIVASGGKAKFFVKSHVIKINGKIAEGRNSKVHVGDVIWIDDN 62 Query: 65 SVQVVA 70 ++VA Sbjct: 63 VYKLVA 68 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 50.6 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + + L L G S +A I +G VKV+ V T KI V+F VQ+ Sbjct: 257 NEPIRLNKFLSNAGVC-SRREADEFIQKGAVKVNDVVVTELGTKITRQDVVTFNEKPVQI 315 >UniRef50_Q98RK5 Putative uncharacterized protein MYPU_0030 n=1 Tax=Mycoplasma pulmonis RepID=Q98RK5_MYCPU Length = 73 Score = 49.8 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 L K + + L+K +SG Q K + QVK++G + + K+ G T+ Sbjct: 3 ILIKGEFLTIGQLIKKIKLIDSGGQIKQFMQSHQVKINGKLINTRNTKVRVGDTIWIDDQ 62 Query: 65 SVQVVA 70 + A Sbjct: 63 LYTIKA 68 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 49.5 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + + L L G S +A + I +G++ V+G V T +I V + V++ Sbjct: 201 NEPIRLNKFLSNAGVC-SRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYKDKRVEI 259 >UniRef50_C4XFM1 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFM1_MYCFE Length = 73 Score = 47.9 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M K + L LLK G ++G AK + ++ ++ + K+ G V Sbjct: 1 MNNEIYLKDDVITLGQLLKKIGLIDTGGSAKGYLLSNKILINNRTPNGRSAKVKIGDIVW 60 Query: 61 FAGHSVQV 68 + Sbjct: 61 INNKVFMI 68 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 47.1 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSF 61 TF + + L LL G + S A+ I G VKV+G V T K+ V+ Sbjct: 9 TFKPDEDGLIRLQKLLAHRGLA-SRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTV 67 Query: 62 AGHSVQVVA 70 G +V V Sbjct: 68 DGKTVPVEP 76 >UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9Y2_BLASP Length = 255 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + + + L L G + S +A I G ++V+G + T+ + + Sbjct: 5 MNQKKIEEEKFIRLNHYLSNAGIT-SRREADKLIQSGLIEVNGKIVTKFGTVVHKNDVIK 63 Query: 61 FAGHSVQ 67 F G ++ Sbjct: 64 FHGSRIK 70 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 45.2 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 K + L L G S +A IA GQV+V+G V + ++ V G V Sbjct: 6 KSSLIRLNRYLARAGVCPSRRKADELIASGQVRVNGQV-AQLGMRVGPDDIVEVNGVRV 63 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 44.1 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 6 LGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 65 + + L L G S A IA G+VKV+GAV + +++ V Sbjct: 200 VEAGEPIRLNKFLSNSGLC-SRRTADQYIAAGRVKVNGAVVSELGSQVLPTDQVMVDDKP 258 Query: 66 VQVVA 70 V + A Sbjct: 259 VTLEA 263 >UniRef50_Q8TYA5 Predicted RNA-binding protein containing the S4 domain n=1 Tax=Methanopyrus kandleri RepID=Q8TYA5_METKA Length = 79 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 L L+ G +ES +AK + G+V+V+G + + + G + G +V+V Sbjct: 6 RLDAFLRDVGLAESRREAKRLVESGRVRVNGKLVRKPWWLVSPGDEIEVDGVTVRV 61 >UniRef50_C0BJ48 RNA-binding S4 domain protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BJ48_9BACT Length = 255 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 V L L G S +A I G V V+G + T ++ V F G VQ Sbjct: 21 ETVRLNKFLSNAGLC-SRREADSHIEMGLVHVNGKIITEMGYQVKPTDEVKFDGARVQ 77 >UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSN6_9PROT Length = 243 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRK-RCKIVAGQTVSFAGH 64 + L L G S +AK I +G V V+G V+ RK + V F G Sbjct: 1 MRLDSYLVEAGHVRSRERAKKVIGDGYVWVNG-VQVRKAGRSLQPTDRVEFRGE 53 >UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobiales RepID=A6UE60_SINMW Length = 137 Score = 42.9 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 L L +S + A+ AI G V V+G ET+ +I AG + + +V Sbjct: 14 RLDKWLFFARLIKSRSLAQKAIEAGHVVVNGKRETQSSAQIKAGDMLEVSLERRDLV 70 >UniRef50_A9NE67 Putative uncharacterized protein n=2 Tax=Acholeplasma laidlawii RepID=A9NE67_ACHLI Length = 71 Score = 42.9 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M F L + + LLK + SG + K + E +V ++ A K+ KI G V+ Sbjct: 4 MNHFELE-GEFITIAQLLKALDYIGSGGETKYFLYEHKVLLNDAEVYEKKKKIKKGDVVT 62 Query: 61 FAGHSVQV 68 G+ + + Sbjct: 63 INGNKILI 70 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 42.5 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L L G S A I +G V V+G + T+ + +S G V + Sbjct: 223 PLRLNKFLASSGVC-SRRVADQLIVDGHVSVNGEIVTQLGKHVTREDFISVDGKPVSI 279 >UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1KRA9_9CHLO Length = 261 Score = 42.5 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L +L ++ S Q IA G+V V+G V T K + G VS +V Sbjct: 101 MRLDVILYRARFATSYLQLHQWIAHGKVCVNGQVVTTKGRLLSPGDVVSIHPQAV 155 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 42.1 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 FS P + L L G + A K I EG+V V+G V T K+ AG TV F Sbjct: 5 NHFSQSSKPEMRLQVYLAHAGVASRRACEK-IIEEGRVSVNGTVVTGMGSKVCAGDTVLF 63 Query: 62 AGHSV 66 G V Sbjct: 64 DGKPV 68 >UniRef50_B7FTM7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FTM7_PHATR Length = 252 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 + L LL +GW S +A I +G VKV+G V + ++ TV +V V A Sbjct: 8 IRLNKLLAHQGWC-SRREANRFIEQGLVKVNGVVS--RDARVAPTDTVELLPQAVTVQA 63 >UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=Schizosaccharomyces RepID=YBB1_SCHPO Length = 327 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%) Query: 23 WSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 ++ S QA+ + G+V V+G E R +++ G V+ SV Sbjct: 107 FASSALQARQLVLHGKVHVNGKPERRAYRQLLPGDLVTVDQKSVM 151 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L + G S +A I EG VKV+G V T K+ G +V + + Sbjct: 329 IRLNKYISNSGIC-SRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNKVL 382 >UniRef50_Q3JNS0 Tyrosyl-tRNA synthetase n=161 Tax=cellular organisms RepID=SYY_BURP1 Length = 413 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 65 + + LLK G S ++A I +G VK+DGA + K K+ AG+ V G Sbjct: 348 GAPLAIGQLLKQAGLVPSTSEALRNIEQGGVKIDGATVSDKALKVDAGEFVVQVGKR 404 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 41.0 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHSVQV 68 + L L G S +A++ IAEG+V V+G V T K+ V F GH V + Sbjct: 10 IRLQKFLSGAGVC-SRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTL 66 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 40.6 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 V L LL G S ++ I G+V+VDG T K++ ++ G Sbjct: 35 VEIPEEPVRLQKLLSQAG-VASRRASEDLIKRGRVQVDGETVTEMGLKVLPSARITVNGQ 93 Query: 65 SV 66 + Sbjct: 94 RI 95 >UniRef50_A1VDC0 Pseudouridine synthase n=3 Tax=Desulfovibrio vulgaris RepID=A1VDC0_DESVV Length = 292 Score = 40.6 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAG 63 + L L G S QA IA G+V+V+G V T ++ + G Sbjct: 39 DEVEDGGTRLNKALSGAGVC-SRRQADTFIAGGKVRVNGEVVTEMGRRVFPATDRIEVEG 97 Query: 64 HSV 66 + Sbjct: 98 RLL 100 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 40.2 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + L + G S +A I+ GQ+ V+G + T K+ V + ++ Sbjct: 318 EETDEIRLNRYIANAGIC-SRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKYGKKAL 376 >UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia RepID=B1ZYG8_OPITP Length = 266 Score = 40.2 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQV 68 + L L G S A+ IA G+V V+GA + K+ G V+ G V+ Sbjct: 5 EPIRLQKYLADAGVC-SRRAAEALIASGEVWVNGAP-AQVGQKVTPGVDRVTTGGKPVRT 62 Query: 69 VA 70 A Sbjct: 63 TA 64 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 39.8 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L + G S +A I +G V+V+GAV T ++ V F G + Sbjct: 137 ETIRLNKYIANSGIC-SRREADELITQGLVQVNGAVVTEMGYQVQKTDKVIFDGQGI 192 >UniRef50_B2KAR0 Hemolysin A n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAR0_ELUMP Length = 258 Score = 39.8 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 65 L L +G+ +S +A+ +I G+V V+G VE KI ++ S Sbjct: 10 RLDMELIAQGFFKSRTRAQASIMAGEVLVNGTVEYGADRKIKPEDIITLKEKS 62 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 39.8 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%) Query: 6 LGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 65 + L +L G + A I G+V V+G ++ G V + G Sbjct: 1 MENDNRERLVKILSAAGIASRRG-AGDLIKAGRVTVNGETVFEPGFRVAPGDRVEYDGVP 59 Query: 66 V 66 V Sbjct: 60 V 60 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 39.8 bits (92), Expect = 0.028, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L L G S +A I GQV V+G V KI+ V F V + Sbjct: 318 EPLRLNKFLANAGVC-SRREADDFILAGQVTVNGEVINELGTKILRTDEVKFQDKLVSL 375 >UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglobaceae RepID=C8S933_FERPL Length = 208 Score = 39.8 bits (92), Expect = 0.029, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + L + LK G+ +S +QAK AI G VKV+G V T+ ++ + + A Sbjct: 1 MRLDEFLKKSGYFKSRSQAKEAIKRGFVKVNGKVITKPSFQVKGSEKIEVAEK 53 >UniRef50_A7HKW0 Hemolysin A n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKW0_FERNB Length = 263 Score = 39.1 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCK 52 ++ + L LL L+G+ ES +A+ I G V +DG V T+ K Sbjct: 2 ENKVLRLDQLLILKGFVESRTKAQQMIENGLVLLDGKVCTKPSKK 46 >UniRef50_Q0VQK2 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQK2_ALCBS Length = 248 Score = 39.1 bits (90), Expect = 0.050, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 L L S + ++ +A G+V+V+G VE ++ +I V G +Q Sbjct: 14 RLDRFLS-ARLQMSRSNLRLLLAAGRVRVNGQVERDRQRRIGLFDAVVCDGEILQ 67 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 38.7 bits (89), Expect = 0.052, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHS 65 + L +L G S A+I I G+V+V+G + T + ++ + G Sbjct: 84 NSGEGIRLQKVLAQAG-VASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVR 142 Query: 66 VQV 68 + + Sbjct: 143 INI 145 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 38.7 bits (89), Expect = 0.066, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L + G S +A IA G V V+G T K+ V F G +Q Sbjct: 70 IRLNKYIANAGIC-SRREADTYIAAGNVTVNGKTITEMGYKVQPTDEVRFDGRLLQ 124 >UniRef50_A6ES27 Pseudouridylate synthase (Ribosomal large subunit pseudouridine synthase B) n=3 Tax=Bacteroidetes RepID=A6ES27_9BACT Length = 289 Score = 38.3 bits (88), Expect = 0.078, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT + K + L + G S +A I G V V+G + K+ V F Sbjct: 50 ATKNTNKQEGIRLNKYISNSGIC-SRREADTYIETGLVSVNGKIVNEMGYKVKLEDDVRF 108 Query: 62 AGHSV 66 G + Sbjct: 109 DGRRI 113 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 38.3 bits (88), Expect = 0.086, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSV 66 + L L G + +A+ I G V V+G T K+V G VS G +V Sbjct: 2 DEAIRLQRYLSQCGVAAR-RKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAV 59 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 37.9 bits (87), Expect = 0.092, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 G + L + G S +A I IA G +KV+G K+ VSF G + Sbjct: 96 GDDNSIRLNRYISNSGVC-SRREADIFIAAGSIKVNGKAVVEMGYKVALSDVVSFDGVVL 154 >UniRef50_Q3ILJ9 Tyrosyl-tRNA synthetase 2 n=29 Tax=Bacteria RepID=SYY2_PSEHT Length = 399 Score = 37.9 bits (87), Expect = 0.097, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGA 44 + + + +LLK S ++A I +G VK++G Sbjct: 331 IEQDSILIANLLKEANLVASTSEAMRMIKQGAVKLNGE 368 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2NNX4 Uncharacterized conserved protein n=4 Tax=Bacter... 101 6e-21 UniRef50_B3EA79 S4 domain protein YaaA n=9 Tax=Bacteria RepID=B3... 96 3e-19 UniRef50_P05650 Uncharacterized protein yaaA n=6 Tax=Bacillaceae... 95 4e-19 UniRef50_A4T9J8 RNA-binding S4 domain protein n=3 Tax=Actinomyce... 94 1e-18 UniRef50_A1SHC1 RNA-binding S4 domain protein n=8 Tax=Bacteria R... 94 2e-18 UniRef50_Q040E7 S4-like RNA binding protein n=9 Tax=Bacilli RepI... 93 3e-18 UniRef50_Q2JW54 S4 domain protein n=11 Tax=Bacteria RepID=Q2JW54... 93 3e-18 UniRef50_C7NC97 S4 domain protein YaaA n=3 Tax=Bacteria RepID=C7... 92 4e-18 UniRef50_C7H1W3 S4 domain protein n=5 Tax=Bacteria RepID=C7H1W3_... 92 4e-18 UniRef50_C9P6X8 Putative uncharacterized protein n=2 Tax=Vibrio ... 91 9e-18 UniRef50_UPI0001C36FBF S4 domain-containing protein n=1 Tax=Rumi... 91 1e-17 UniRef50_C5R9Y4 RNA-binding S4 protein n=2 Tax=Lactobacillales R... 90 2e-17 UniRef50_B9Y5K4 Putative uncharacterized protein n=1 Tax=Holdema... 90 2e-17 UniRef50_C5C9J3 Uncharacterized conserved protein n=33 Tax=Bacte... 90 2e-17 UniRef50_A0JUK2 RNA-binding S4 domain protein n=5 Tax=Bacteria R... 90 3e-17 UniRef50_Q8YS38 Asl3253 protein n=3 Tax=Bacteria RepID=Q8YS38_ANASP 90 3e-17 UniRef50_Q04CX3 S4-like RNA binding protein n=23 Tax=Lactobacill... 89 3e-17 UniRef50_Q3A8P4 S4 domain protein n=9 Tax=Bacteria RepID=Q3A8P4_... 89 4e-17 UniRef50_Q03UE2 S4-like RNA-binding protein n=88 Tax=Bacilli Rep... 89 4e-17 UniRef50_A5F078 Putative uncharacterized protein n=27 Tax=Vibrio... 89 4e-17 UniRef50_A3DHZ6 RNA-binding S4 n=22 Tax=Bacteria RepID=A3DHZ6_CLOTH 89 5e-17 UniRef50_D0WCJ3 S4 RNA-binding domain protein n=28 Tax=Neisseria... 89 5e-17 UniRef50_Q7NXD6 Putative uncharacterized protein n=1 Tax=Chromob... 89 7e-17 UniRef50_C5V8W2 S4 domain protein n=10 Tax=Corynebacterium RepID... 89 7e-17 UniRef50_C9RXR9 S4 domain protein YaaA n=22 Tax=Bacilli RepID=C9... 88 7e-17 UniRef50_B8I3R4 RNA-binding S4 domain protein n=15 Tax=Bacteria ... 88 7e-17 UniRef50_C5REZ0 S4 domain protein YaaA n=2 Tax=Bacteria RepID=C5... 88 1e-16 UniRef50_B5ET37 Putative uncharacterized protein n=4 Tax=Vibrion... 88 1e-16 UniRef50_D1YBL0 S4 domain protein n=3 Tax=Propionibacterium acne... 87 1e-16 UniRef50_B0MRG2 Putative uncharacterized protein n=1 Tax=Eubacte... 87 2e-16 UniRef50_Q9RCA0 BH0003 protein n=2 Tax=Bacillus RepID=Q9RCA0_BACHD 87 2e-16 UniRef50_C8P206 Conserved domain protein n=1 Tax=Erysipelothrix ... 87 2e-16 UniRef50_Q7MEF9 Uncharacterized conserved protein n=29 Tax=Prote... 87 2e-16 UniRef50_A1SRW3 Putative uncharacterized protein n=1 Tax=Psychro... 87 2e-16 UniRef50_C4FYE0 Putative uncharacterized protein n=1 Tax=Catonel... 86 3e-16 UniRef50_A5VHF5 S4 region, YaaA n=8 Tax=Lactobacillus reuteri Re... 86 3e-16 UniRef50_D1AIS8 RNA-binding S4 domain protein n=1 Tax=Sebaldella... 85 4e-16 UniRef50_B2GKW6 Putative uncharacterized protein n=1 Tax=Kocuria... 85 5e-16 UniRef50_C7R3K8 RNA-binding S4 domain protein n=1 Tax=Jonesia de... 85 6e-16 UniRef50_C6WCR0 RNA-binding S4 domain protein n=1 Tax=Actinosynn... 85 6e-16 UniRef50_B5IMQ5 S4 domain protein n=1 Tax=Cyanobium sp. PCC 7001... 85 6e-16 UniRef50_B4AXG0 RNA-binding S4 domain protein n=2 Tax=Bacteria R... 85 6e-16 UniRef50_B5YFF2 Conserved domain protein n=14 Tax=Bacteria RepID... 85 6e-16 UniRef50_C8PB15 Putative uncharacterized protein n=1 Tax=Lactoba... 85 7e-16 UniRef50_Q47Z52 Putative uncharacterized protein n=1 Tax=Colwell... 85 8e-16 UniRef50_UPI000196B722 hypothetical protein CATMIT_00450 n=1 Tax... 85 8e-16 UniRef50_Q1ZHE9 Putative uncharacterized protein n=1 Tax=Psychro... 84 1e-15 UniRef50_P0AAS7 Uncharacterized protein ybcJ n=158 Tax=Gammaprot... 84 1e-15 UniRef50_B0RQY2 Putative uncharacterized protein n=15 Tax=Proteo... 84 1e-15 UniRef50_B7CCH6 Putative uncharacterized protein n=1 Tax=Eubacte... 84 1e-15 UniRef50_D1VQP8 RNA-binding S4 domain protein n=7 Tax=Actinomyce... 84 1e-15 UniRef50_D0BMB1 S4 domain-containing protein YaaA n=1 Tax=Granul... 84 2e-15 UniRef50_B2THB6 S4 domain protein YaaA n=3 Tax=Clostridium botul... 84 2e-15 UniRef50_C1ZC96 Uncharacterized conserved protein n=4 Tax=Bacter... 84 2e-15 UniRef50_C4ZNZ6 RNA-binding S4 domain protein n=4 Tax=Bacteria R... 83 2e-15 UniRef50_B4WNT6 Putative uncharacterized protein n=1 Tax=Synecho... 83 3e-15 UniRef50_Q39ZH7 RNA-binding S4 n=5 Tax=Bacteria RepID=Q39ZH7_GEOMG 83 3e-15 UniRef50_B2IY27 RNA-binding S4 domain protein n=6 Tax=Cyanobacte... 83 3e-15 UniRef50_D2MMX5 S4 domain protein n=1 Tax=Bulleidia extructa W12... 83 3e-15 UniRef50_C0W7H4 Putative uncharacterized protein n=1 Tax=Actinom... 82 4e-15 UniRef50_D0BT73 Putative uncharacterized protein n=9 Tax=Fusobac... 82 4e-15 UniRef50_A0KYH4 RNA-binding S4 domain protein n=13 Tax=Gammaprot... 82 6e-15 UniRef50_A7FPF2 S4 domain protein n=12 Tax=Bacteria RepID=A7FPF2... 82 7e-15 UniRef50_A1RL52 RNA-binding S4 domain protein n=13 Tax=Shewanell... 82 8e-15 UniRef50_C7XXJ9 S4 domain-containing protein YaaA n=1 Tax=Lactob... 81 9e-15 UniRef50_A9KPP3 RNA-binding S4 domain protein n=10 Tax=Bacteria ... 81 1e-14 UniRef50_A2SHW4 Putative uncharacterized protein n=1 Tax=Methyli... 81 1e-14 UniRef50_A6GUC8 Putative uncharacterized protein n=2 Tax=Proteob... 81 1e-14 UniRef50_D1J7E3 Putative uncharacterized protein n=1 Tax=Mycopla... 81 1e-14 UniRef50_Q46KV3 RNA-binding S4 n=6 Tax=Cyanobacteria RepID=Q46KV... 80 2e-14 UniRef50_D1AW62 RNA-binding S4 domain protein n=2 Tax=Bacteria R... 80 2e-14 UniRef50_A4J0F2 RNA-binding S4 domain protein n=3 Tax=Bacteria R... 80 3e-14 UniRef50_A7BD09 Putative uncharacterized protein n=1 Tax=Actinom... 80 3e-14 UniRef50_Q2YZS1 Putative uncharacterized protein n=6 Tax=Bacteri... 80 3e-14 UniRef50_Q02WH9 S4-like RNA-binding protein n=6 Tax=Bacilli RepI... 79 3e-14 UniRef50_Q04HR4 S4-like RNA binding protein n=47 Tax=Lactobacill... 79 4e-14 UniRef50_C2EAX7 RNA-binding S4 protein n=1 Tax=Lactobacillus rum... 79 4e-14 UniRef50_Q1IXU2 RNA-binding S4 n=4 Tax=Bacteria RepID=Q1IXU2_DEIGD 79 5e-14 UniRef50_A2BWE9 Putative uncharacterized protein n=3 Tax=Bacteri... 79 7e-14 UniRef50_Q1K491 RNA-binding S4 n=2 Tax=Desulfuromonadales RepID=... 78 1e-13 UniRef50_C4V1P6 Putative uncharacterized protein n=2 Tax=Selenom... 77 2e-13 UniRef50_A4FA99 RNA-binding S4 n=8 Tax=Bacteria RepID=A4FA99_SACEN 77 2e-13 UniRef50_Q3IFL5 Putative uncharacterized protein n=3 Tax=Alterom... 77 2e-13 UniRef50_C0QLP4 Putative uncharacterized protein n=1 Tax=Desulfo... 77 2e-13 UniRef50_C9KQB0 Conserved domain protein n=1 Tax=Mitsuokella mul... 76 3e-13 UniRef50_A0AEJ0 Complete genome n=15 Tax=Listeria RepID=A0AEJ0_L... 76 3e-13 UniRef50_Q6KIT5 Expressed protein n=1 Tax=Mycoplasma mobile RepI... 76 3e-13 UniRef50_B1AI65 S4 domain protein YaaA n=15 Tax=Ureaplasma RepID... 76 3e-13 UniRef50_Q0IAV4 S4 domain protein n=14 Tax=Cyanobacteria RepID=Q... 76 4e-13 UniRef50_B1Y6F1 RNA-binding S4 domain protein n=32 Tax=Bacteria ... 75 5e-13 UniRef50_A6SVF2 Uncharacterized conserved protein n=8 Tax=Burkho... 75 5e-13 UniRef50_C8VV99 RNA-binding S4 domain protein n=1 Tax=Desulfotom... 75 5e-13 UniRef50_Q05Y91 RNA-binding S4 n=3 Tax=Bacteria RepID=Q05Y91_9SYNE 75 7e-13 UniRef50_Q30QF2 RNA-binding S4 n=2 Tax=Campylobacterales RepID=Q... 75 8e-13 UniRef50_B3PLR9 Putative uncharacterized protein n=1 Tax=Mycopla... 75 8e-13 UniRef50_Q98RK5 Putative uncharacterized protein MYPU_0030 n=1 T... 74 1e-12 UniRef50_B2A2Y8 S4-like RNA binding protein n=2 Tax=Firmicutes R... 74 2e-12 UniRef50_C1D9I9 Putative RNA-binding protein n=1 Tax=Laribacter ... 73 2e-12 UniRef50_D1BQ79 RNA-binding S4 domain protein n=3 Tax=Veillonell... 73 3e-12 UniRef50_A3NBX1 Conserved domain protein n=33 Tax=Burkholderia R... 73 3e-12 UniRef50_Q47ZU6 Putative uncharacterized protein n=1 Tax=Colwell... 72 4e-12 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 72 4e-12 UniRef50_C5BW46 RNA-binding S4 domain protein n=1 Tax=Beutenberg... 72 7e-12 UniRef50_C5J5G0 Putative uncharacterized protein MCJ_000030 n=1 ... 72 7e-12 UniRef50_A5INP4 S4 region, YaaA n=62 Tax=Staphylococcus RepID=A5... 72 7e-12 UniRef50_C9LP64 Conserved domain protein n=1 Tax=Dialister invis... 71 1e-11 UniRef50_Q4A746 Putative uncharacterized protein n=1 Tax=Mycopla... 71 1e-11 UniRef50_C7NEZ0 Uncharacterized conserved protein n=1 Tax=Kytoco... 70 2e-11 UniRef50_D2SGH5 Putative uncharacterized protein n=1 Tax=Geoderm... 70 2e-11 UniRef50_C4XFM1 Putative uncharacterized protein n=1 Tax=Mycopla... 70 3e-11 UniRef50_C6XTU3 RNA-binding S4 domain protein n=4 Tax=Sphingobac... 70 3e-11 UniRef50_C7REZ7 S4 domain-containing protein n=5 Tax=Anaerococcu... 69 3e-11 UniRef50_A4VYF8 Uncharacterized conserved protein n=68 Tax=Strep... 69 3e-11 UniRef50_A8MEA2 RNA-binding S4 domain protein n=2 Tax=Alkaliphil... 69 3e-11 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 68 1e-10 UniRef50_C0VZC3 Putative uncharacterized protein n=1 Tax=Actinom... 67 1e-10 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 67 1e-10 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 67 2e-10 UniRef50_D0WQU2 RNA-binding S4 n=1 Tax=Actinomyces sp. oral taxo... 67 2e-10 UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium s... 65 8e-10 UniRef50_B5Y6P2 Conserved domain protein n=1 Tax=Coprothermobact... 63 2e-09 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 62 8e-09 UniRef50_Q8TYA5 Predicted RNA-binding protein containing the S4 ... 60 2e-08 Sequences not found previously or not previously below threshold: UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 62 8e-09 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 58 9e-08 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 57 2e-07 UniRef50_C0BJ48 RNA-binding S4 domain protein n=1 Tax=Flavobacte... 57 2e-07 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 56 3e-07 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 55 6e-07 UniRef50_A9NE67 Putative uncharacterized protein n=2 Tax=Acholep... 55 7e-07 UniRef50_A1VDC0 Pseudouridine synthase n=3 Tax=Desulfovibrio vul... 55 8e-07 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 54 1e-06 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 53 2e-06 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 53 2e-06 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 53 2e-06 UniRef50_A6ES27 Pseudouridylate synthase (Ribosomal large subuni... 53 3e-06 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 52 8e-06 UniRef50_Q6AQ24 Related to ribosomal large subunit pseudouridine... 52 8e-06 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 52 9e-06 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 52 9e-06 UniRef50_A5FK52 Ribosomal large subunit pseudouridine synthase B... 51 9e-06 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 51 9e-06 UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia R... 51 1e-05 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 51 1e-05 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 51 1e-05 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 51 1e-05 UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis ... 50 2e-05 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 50 2e-05 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 50 2e-05 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 50 2e-05 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 50 2e-05 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 50 2e-05 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 50 3e-05 UniRef50_B7FTM7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 50 3e-05 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 49 3e-05 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 49 4e-05 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 49 4e-05 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 49 5e-05 UniRef50_Q26G32 Ribosomal large subunit pseudouridine synthase F... 49 6e-05 UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F... 48 7e-05 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 48 7e-05 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 48 8e-05 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 48 8e-05 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 48 8e-05 UniRef50_C9M8T9 RNA pseudouridine synthase n=2 Tax=Synergistacea... 48 8e-05 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 48 9e-05 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 48 1e-04 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 48 1e-04 UniRef50_Q0BE12 Pseudouridine synthase, Rsu n=7 Tax=Burkholderia... 48 1e-04 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 48 1e-04 UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 48 1e-04 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 47 1e-04 UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobial... 47 2e-04 UniRef50_B3E104 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 47 2e-04 UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla ... 47 2e-04 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 47 2e-04 UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=S... 47 2e-04 UniRef50_B2UMD6 Pseudouridine synthase n=1 Tax=Akkermansia mucin... 47 2e-04 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 47 2e-04 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 47 3e-04 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 47 3e-04 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 46 3e-04 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 46 4e-04 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 46 4e-04 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 46 4e-04 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 46 4e-04 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 46 4e-04 UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglo... 46 4e-04 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 46 4e-04 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 46 5e-04 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 46 5e-04 UniRef50_Q04T62 Pseudouridine synthase n=4 Tax=Leptospira RepID=... 45 5e-04 UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K... 45 5e-04 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 45 6e-04 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 45 6e-04 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 45 6e-04 UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosae... 45 6e-04 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 45 6e-04 UniRef50_Q7NQJ1 Pseudouridylate synthase n=1 Tax=Chromobacterium... 45 7e-04 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 45 7e-04 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 45 7e-04 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 45 8e-04 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 45 0.001 UniRef50_A7HKW0 Hemolysin A n=1 Tax=Fervidobacterium nodosum Rt1... 45 0.001 UniRef50_C7XEV3 Pseudouridine synthase family 1 protein n=6 Tax=... 45 0.001 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 45 0.001 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 45 0.001 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 44 0.001 UniRef50_A9NGL0 rRNA pseudouridylate synthase n=1 Tax=Acholeplas... 44 0.001 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 44 0.001 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 44 0.001 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 44 0.001 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 44 0.001 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 44 0.001 UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B... 44 0.001 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 44 0.001 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 44 0.002 UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyos... 44 0.002 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 44 0.002 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 44 0.002 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 44 0.002 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 44 0.002 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 44 0.002 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 44 0.002 UniRef50_C7RM56 RNA-binding S4 domain protein n=1 Tax=Candidatus... 43 0.002 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 43 0.002 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 43 0.002 UniRef50_B4U7M2 Hemolysin A n=1 Tax=Hydrogenobaculum sp. Y04AAS1... 43 0.002 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 43 0.002 UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetace... 43 0.002 UniRef50_B5JX71 Pseudouridine synthase n=1 Tax=gamma proteobacte... 43 0.002 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 43 0.002 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 43 0.002 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 43 0.003 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 43 0.003 UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 43 0.003 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 43 0.003 UniRef50_D1CG17 Hemolysin A n=1 Tax=Thermobaculum terrenum ATCC ... 43 0.004 UniRef50_A0K8E6 Pseudouridine synthase, Rsu n=38 Tax=Burkholderi... 43 0.004 UniRef50_B9HLH3 Predicted protein n=5 Tax=Magnoliophyta RepID=B9... 43 0.004 UniRef50_Q0VQK2 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 43 0.004 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 43 0.004 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 43 0.004 UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepI... 43 0.004 UniRef50_B0VGS5 Tyrosyl-tRNA synthetase n=1 Tax=Candidatus Cloac... 43 0.004 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 43 0.004 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 43 0.004 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 42 0.004 UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacte... 42 0.004 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 42 0.004 >UniRef50_D2NNX4 Uncharacterized conserved protein n=4 Tax=Bacteria RepID=D2NNX4_9MICC Length = 110 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + + L LKL E GAQA+ I G VKV+G +E + ++ G TV+F Sbjct: 41 EEIFIRDDMIRLGQFLKLANLVEDGAQAREVIQHGLVKVNGDIEEARGKQLHPGDTVTFN 100 Query: 63 GHSVQV 68 G +V+V Sbjct: 101 GVTVKV 106 >UniRef50_B3EA79 S4 domain protein YaaA n=9 Tax=Bacteria RepID=B3EA79_GEOLS Length = 72 Score = 95.8 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M+ +++L LKL SG +AKI I EGQ++V+GAVETR+ K+ G T++ Sbjct: 1 MSEKISIDTDYIKLDSFLKLANLVMSGGEAKIVIQEGQIRVNGAVETRRGRKLYPGDTIA 60 Query: 61 FAGHSVQVV 69 G S V+ Sbjct: 61 LTGSSSFVI 69 >UniRef50_P05650 Uncharacterized protein yaaA n=6 Tax=Bacillaceae RepID=YAAA_BACSU Length = 71 Score = 95.5 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MA + L LKL +SG AK ++E +V V+ + R+ K+ G V Sbjct: 1 MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVNDEPDNRRGRKLYVGDVVE 60 Query: 61 FAGH-SVQVV 69 G S QVV Sbjct: 61 IEGFGSFQVV 70 >UniRef50_A4T9J8 RNA-binding S4 domain protein n=3 Tax=Actinomycetales RepID=A4T9J8_MYCGI Length = 80 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + + L LKL +SGA AK IA+G+V V+G VE R+ ++ G V AG Sbjct: 13 EVAIRDDTIRLGQFLKLANLIDSGADAKTVIADGEVTVNGEVERRRGRQLHPGDVVGLAG 72 Query: 64 HSVQV 68 H +V Sbjct: 73 HRARV 77 >UniRef50_A1SHC1 RNA-binding S4 domain protein n=8 Tax=Bacteria RepID=A1SHC1_NOCSJ Length = 84 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L LKL ESGA AK IA+G V+V+G VETR+ ++V G V+ Sbjct: 9 VPIRDESIRLGQFLKLANLVESGADAKPVIADGLVRVNGEVETRRGRQLVVGDVVTLGPA 68 Query: 65 SVQV 68 + +V Sbjct: 69 AARV 72 >UniRef50_Q040E7 S4-like RNA binding protein n=9 Tax=Bacilli RepID=Q040E7_LEUMM Length = 148 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M T ++ L LLK E SG QAK + + V ++G E R+ K+ + Sbjct: 1 MTTSVRITTEYITLTQLLKEENIISSGGQAKYYLMDFPVLLNGETENRRGKKLYDHDEIV 60 Query: 61 FAGHSVQVV 69 G + + Sbjct: 61 IDGETYTIE 69 >UniRef50_Q2JW54 S4 domain protein n=11 Tax=Bacteria RepID=Q2JW54_SYNJA Length = 93 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 35/60 (58%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 P ++L LKL G +G QAK I GQV+V+G VETR+ K+ G V+ AG QV Sbjct: 15 DPLIKLDQFLKLTGVVPTGGQAKQLIQAGQVRVNGEVETRRGRKLRLGDEVAVAGQVWQV 74 >UniRef50_C7NC97 S4 domain protein YaaA n=3 Tax=Bacteria RepID=C7NC97_LEPBD Length = 75 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 38/68 (55%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + ++L LLK ++ SG +AK+ I G+VKV+ AVETR+ KI G V FA Sbjct: 6 EEVVINTEFIKLDQLLKWANFTGSGVEAKMFIQNGEVKVNDAVETRRGKKIYDGDVVEFA 65 Query: 63 GHSVQVVA 70 G V V A Sbjct: 66 GEKVAVRA 73 >UniRef50_C7H1W3 S4 domain protein n=5 Tax=Bacteria RepID=C7H1W3_9FIRM Length = 71 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 33/66 (50%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 L ++L LLK G E+G +AK + G VKV+G V T + K AG V Sbjct: 2 QKILIHTEFIKLDALLKYAGLCETGGEAKELVQGGAVKVNGEVCTMRGKKCRAGDVVELD 61 Query: 63 GHSVQV 68 G +V+V Sbjct: 62 GQTVEV 67 >UniRef50_C9P6X8 Putative uncharacterized protein n=2 Tax=Vibrio RepID=C9P6X8_VIBME Length = 167 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + +EL +LKL G +AK IAEG V V+G +E RKR K+ G + F Sbjct: 18 VEVDNQPIELYKVLKLANAVSGGGEAKHVIAEGYVAVNGELEARKRRKLYDGDLIEFNQE 77 Query: 65 SVQVV 69 V+ Sbjct: 78 YYLVI 82 >UniRef50_UPI0001C36FBF S4 domain-containing protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36FBF Length = 69 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 34/69 (49%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MA ++L LLK +G +AK I +G+V V+G V T + KI G TVS Sbjct: 1 MAEKIKISTEFIKLDALLKFASLVGTGGEAKARIQDGEVLVNGEVCTMRGKKIRPGDTVS 60 Query: 61 FAGHSVQVV 69 G+ V V Sbjct: 61 IDGNEVIVE 69 >UniRef50_C5R9Y4 RNA-binding S4 protein n=2 Tax=Lactobacillales RepID=C5R9Y4_WEIPA Length = 77 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MAT + P + L LLK E +G QAK + E V V+ + R+ K+ G ++ Sbjct: 1 MATEVQIQAPFITLGQLLKEESIIATGGQAKWFLRENTVLVNEEPDDRRGRKLYPGDVIA 60 Query: 61 FA-GHSVQV 68 G + Sbjct: 61 VPSGERFVI 69 >UniRef50_B9Y5K4 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5K4_9FIRM Length = 100 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 T + L LLK+ W SG +AK+A+ E ++ V+G E R+ K+ G +S Sbjct: 33 TMIKIDTEFITLGQLLKMTDWISSGGEAKLAVKELKITVNGEKEDRRGRKLYPGDQISIE 92 Query: 63 GHSVQVV 69 + Sbjct: 93 DKRYTIE 99 >UniRef50_C5C9J3 Uncharacterized conserved protein n=33 Tax=Bacteria RepID=C5C9J3_MICLC Length = 80 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 35/69 (50%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 A + + L LKL + GA A+ + +G V V+GAVETR+ ++ G V F Sbjct: 9 AQPLPIRDESIRLGQALKLASLVDDGAMARDVVTDGLVTVNGAVETRRGAQLHDGDVVEF 68 Query: 62 AGHSVQVVA 70 AG + V A Sbjct: 69 AGEAFVVQA 77 >UniRef50_A0JUK2 RNA-binding S4 domain protein n=5 Tax=Bacteria RepID=A0JUK2_ARTS2 Length = 92 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + + L LLKL E G +A I G VKV+G ++ R+ ++ G TV+ Sbjct: 21 EEVPIRDDMIRLGQLLKLASLVEDGVEATELIRNGLVKVNGEIDDRRGRQLHHGDTVTVN 80 Query: 63 GHSVQVV 69 G +V+++ Sbjct: 81 GRTVRIL 87 >UniRef50_Q8YS38 Asl3253 protein n=3 Tax=Bacteria RepID=Q8YS38_ANASP Length = 93 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 42/68 (61%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 +A + L ++L LKL G + +G QAK+ I +G VKV+GAVETR+ K+V+ V+ Sbjct: 16 LAQYKLILISMIKLDQFLKLVGIAPTGGQAKLMIMDGDVKVNGAVETRRGRKLVSSDRVT 75 Query: 61 FAGHSVQV 68 AG +V Sbjct: 76 VAGQVFEV 83 >UniRef50_Q04CX3 S4-like RNA binding protein n=23 Tax=Lactobacillus RepID=Q04CX3_LACDB Length = 77 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + L LK E SG QAK + + V V+G E R+ K+ G ++ A Sbjct: 8 ETFAINGEFITLGQFLKDECIVSSGGQAKWYLKDSPVLVNGDKEDRRGRKLYPGDRLTVA 67 Query: 63 GHSVQVV 69 G ++V Sbjct: 68 GKEYELV 74 >UniRef50_Q3A8P4 S4 domain protein n=9 Tax=Bacteria RepID=Q3A8P4_CARHZ Length = 73 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 34/67 (50%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 ++EL LLK + +G QAK I G V V+G VETR++ KI G V A Sbjct: 2 EKVYIHTEYIELDSLLKWANIAMTGGQAKQMIKSGMVLVNGVVETRRKKKIYPGDRVEIA 61 Query: 63 GHSVQVV 69 G V +V Sbjct: 62 GGPVLIV 68 >UniRef50_Q03UE2 S4-like RNA-binding protein n=88 Tax=Bacilli RepID=Q03UE2_LACBA Length = 75 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M L + P++ L LLK E +G QAK + E V ++ + R+ K+ G TV+ Sbjct: 1 MKKEVLIETPYITLGQLLKEESVISTGGQAKWYLQENTVNINDEPDNRRGRKLYPGDTVA 60 Query: 61 FAG 63 Sbjct: 61 VPE 63 >UniRef50_A5F078 Putative uncharacterized protein n=27 Tax=Vibrionaceae RepID=A5F078_VIBC3 Length = 160 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 33/65 (50%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 +EL +LK+ G +AK I+EG V V+G VETRKRCK+ G + F Sbjct: 20 VEVSCQPIELHKVLKIANAVSGGGEAKHVISEGYVFVNGDVETRKRCKVFDGDLIEFNQE 79 Query: 65 SVQVV 69 V+ Sbjct: 80 FYLVI 84 >UniRef50_A3DHZ6 RNA-binding S4 n=22 Tax=Bacteria RepID=A3DHZ6_CLOTH Length = 68 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 ++L LK G++AK+ I G VKV+G VE R+ K+ G V Sbjct: 2 ENIKINTEFIKLDQFLKWTKTVSMGSEAKLMIRSGLVKVNGEVELRRGRKLRTGDIVEIN 61 Query: 63 GHSVQVV 69 Q+V Sbjct: 62 DKKFQIV 68 >UniRef50_D0WCJ3 S4 RNA-binding domain protein n=28 Tax=Neisseriaceae RepID=D0WCJ3_NEILA Length = 121 Score = 88.5 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 42/67 (62%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT L + ++ LCDLLKL G +ESG QAK IAEG V +G ETRK KI G+ + F Sbjct: 47 ATVYLEDNEYIALCDLLKLAGLAESGGQAKAFIAEGLVLRNGETETRKTAKIRGGEVIEF 106 Query: 62 AGHSVQV 68 G +++ Sbjct: 107 DGARLEI 113 >UniRef50_Q7NXD6 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NXD6_CHRVO Length = 71 Score = 88.5 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 37/70 (52%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M ++ LCDLLK SG AK IAEG V V+G VE RK CKI AGQ VS Sbjct: 1 MKETYQLSGEYIALCDLLKACNVCHSGGAAKHFIAEGNVSVNGQVELRKTCKIRAGQQVS 60 Query: 61 FAGHSVQVVA 70 G + V A Sbjct: 61 GDGFLIVVEA 70 >UniRef50_C5V8W2 S4 domain protein n=10 Tax=Corynebacterium RepID=C5V8W2_9CORY Length = 96 Score = 88.5 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 ++L +KL E+G AK IA+G+V V+GA +TR+ + G V Sbjct: 6 VTISSETIKLGQFIKLASLVETGGAAKEVIADGRVTVNGATDTRRGKTLRDGDVVCVDDM 65 Query: 65 SVQV 68 QV Sbjct: 66 CAQV 69 >UniRef50_C9RXR9 S4 domain protein YaaA n=22 Tax=Bacilli RepID=C9RXR9_GEOSY Length = 76 Score = 88.1 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + L LLKL ++G AK + E V V+G E R+ K+ G + Sbjct: 4 MEQRVTITTETITLGQLLKLVRLIDTGGAAKWFLQEHHVLVNGERENRRGRKLRDGDRID 63 Query: 61 FAGHSVQVV 69 VV Sbjct: 64 IEPFGTFVV 72 >UniRef50_B8I3R4 RNA-binding S4 domain protein n=15 Tax=Bacteria RepID=B8I3R4_CLOCE Length = 71 Score = 88.1 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 ++L LK G ++GA AK I +G VKV+G VE ++ K+ G TV F Sbjct: 2 EEVGINTEFIKLDQFLKWVGACDNGALAKGFIVDGFVKVNGNVELQRGKKLRNGDTVEFN 61 Query: 63 GHSVQVV 69 +V+ Sbjct: 62 QKQYKVI 68 >UniRef50_C5REZ0 S4 domain protein YaaA n=2 Tax=Bacteria RepID=C5REZ0_CLOCL Length = 85 Score = 87.8 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + + ++L +KL SG++AK+ I +V V+G +E R+ K+ G V F G Sbjct: 20 EIVIETEFIKLDSFMKLAAIVSSGSEAKMIIKSQEVTVNGEIEERRGKKLYKGDVVEFNG 79 Query: 64 HSVQVV 69 S +VV Sbjct: 80 ESYKVV 85 >UniRef50_B5ET37 Putative uncharacterized protein n=4 Tax=Vibrionaceae RepID=B5ET37_VIBFM Length = 135 Score = 87.8 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 +EL +LK+ G +AK I EG V V+G +E RKR K+ G + F Sbjct: 14 VEVNVQPIELYKVLKIANVVSGGGEAKHVIGEGYVGVNGELEQRKRRKMYDGDVIEFNEE 73 Query: 65 SVQVV 69 V+ Sbjct: 74 YYVVI 78 >UniRef50_D1YBL0 S4 domain protein n=3 Tax=Propionibacterium acnes RepID=D1YBL0_PROAC Length = 76 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 29/63 (46%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L LK +E+G QA+ IA G V V+G VETR+ ++ G V Sbjct: 3 DDQMIRLGQYLKFANLAETGGQARELIASGMVSVNGEVETRRGRQLHPGDEVRVTNGGQT 62 Query: 68 VVA 70 V A Sbjct: 63 VTA 65 >UniRef50_B0MRG2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRG2_9FIRM Length = 74 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 30/67 (44%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M K P ++L LK G E+G +AK AI G V V+G + T + KI G V Sbjct: 4 MCINVNVKPPFIKLEQFLKFSGACETGGEAKNAIQGGYVHVNGEICTMRGKKIADGDIVE 63 Query: 61 FAGHSVQ 67 + Sbjct: 64 LDEQQYK 70 >UniRef50_Q9RCA0 BH0003 protein n=2 Tax=Bacillus RepID=Q9RCA0_BACHD Length = 73 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M+ ++ L LLK G ++G AK +AE +V V+G E R+ K+ +G +V+ Sbjct: 1 MSQQLPITTSYITLGQLLKEVGVIDTGGMAKWYLAEHEVLVNGESEDRRGKKLFSGDSVT 60 Query: 61 FAGHSV 66 A +V Sbjct: 61 LADGTV 66 >UniRef50_C8P206 Conserved domain protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P206_ERYRH Length = 73 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + ++ L LK+ + SG +AK I ++V+G E R+ K+ G V G+ + Sbjct: 7 ETQYITLGQFLKVADYVNSGGEAKHLIHSFSIQVNGEEENRRGRKLYPGDVVVINGNKHE 66 Query: 68 V 68 + Sbjct: 67 I 67 >UniRef50_Q7MEF9 Uncharacterized conserved protein n=29 Tax=Proteobacteria RepID=Q7MEF9_VIBVY Length = 184 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 +EL + K+ G +AK IAEG V V+G +ETRKR K+ G F Sbjct: 28 VEVSVQPIELYKVFKIANLVSGGGEAKHVIAEGYVAVNGELETRKRRKMYDGDFFEFNQE 87 Query: 65 SVQVV 69 VV Sbjct: 88 YYVVV 92 >UniRef50_A1SRW3 Putative uncharacterized protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRW3_PSYIN Length = 128 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 35/67 (52%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT K L +LK G +AK+AI EG V ++G VET+KR KI AG +SF Sbjct: 8 ATLVEIKEEPTALYKILKFANLVSGGGEAKLAITEGYVFLNGQVETQKRKKIYAGDVISF 67 Query: 62 AGHSVQV 68 Q+ Sbjct: 68 NEQHYQI 74 >UniRef50_C4FYE0 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FYE0_9FIRM Length = 76 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + + L +LK EG +G QAK ++E +V V+ ETR+ K+ G V+ Sbjct: 4 QEISIESDFITLGQVLKNEGIIATGGQAKWFLSEEKVLVNQEQETRRGRKLYPGDQVTIP 63 >UniRef50_A5VHF5 S4 region, YaaA n=8 Tax=Lactobacillus reuteri RepID=A5VHF5_LACRD Length = 73 Score = 85.8 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 L P + L LLK EG +G AK + E V V+ + R+ K+ + Sbjct: 4 KSVLIDSPFITLGQLLKEEGIIPTGGAAKWFLKENTVLVNDEPDDRRGRKLYPEDKIQIP 63 Query: 63 GHSVQVV 69 H + V+ Sbjct: 64 DHQLLVI 70 >UniRef50_D1AIS8 RNA-binding S4 domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIS8_SEBTE Length = 70 Score = 85.4 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 K ++L LLK G G +A+ I EG V+V+G E R+ KI + Sbjct: 2 KEVEIKTEFIKLDQLLKWAGMVGDGGEARYHILEGNVRVNGETEKRRGKKIYENDIIELD 61 Query: 63 GHSVQVV 69 G +++V Sbjct: 62 GEKIKIV 68 >UniRef50_B2GKW6 Putative uncharacterized protein n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GKW6_KOCRD Length = 78 Score = 85.4 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + + L LKL +E G AK ++EG V V+GAVETR+ ++ G + Sbjct: 7 EELPIRDQMIRLGQALKLANLAEDGHHAKTLVSEGAVHVNGAVETRRGAQLHPGDVLEVP 66 >UniRef50_C7R3K8 RNA-binding S4 domain protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3K8_JONDD Length = 84 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + + L LKL +ESGA A+ I + V V+G +E R+ +++ G V+ Sbjct: 9 LVTIRDTMIRLGQFLKLASLAESGAHARDLIEDDNVYVNGELEKRRGRQLIHGDIVTV 66 >UniRef50_C6WCR0 RNA-binding S4 domain protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCR0_ACTMD Length = 91 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + L LKL G +E GA A+ + EG+V V+G E+R+ ++ G V+ G Sbjct: 5 EVEIADDMIRLGQFLKLAGLAEHGAHARELVEEGEVTVNGRPESRRGAQLKNGDVVAVDG 64 Query: 64 HSVQVVA 70 ++VA Sbjct: 65 EKARLVA 71 >UniRef50_B5IMQ5 S4 domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMQ5_9CHRO Length = 89 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 V+L LK +G + +G +AK+ I G V+V+G +ETR+ ++ G V G + V+ Sbjct: 25 FVKLDQFLKFQGLAATGGEAKLRIQRGDVRVNGVIETRRGRQLAPGDAVGIDGRELLVMP 84 >UniRef50_B4AXG0 RNA-binding S4 domain protein n=2 Tax=Bacteria RepID=B4AXG0_9CHRO Length = 70 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 37/58 (63%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LK +G ++G +AKI I G+V V+G +ETR+ K+V+G V+ G + QV Sbjct: 11 TIKLAQFLKWQGLVQTGGEAKIRIQGGEVLVNGTLETRRGRKLVSGDRVTIDGKTYQV 68 >UniRef50_B5YFF2 Conserved domain protein n=14 Tax=Bacteria RepID=B5YFF2_DICT6 Length = 71 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 28/67 (41%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + L LK E+G QAK I G+VKV+G +E + K+ G V Sbjct: 2 KEIKIYTESITLGQFLKWCRVVETGGQAKNLILAGRVKVNGEIELHRSRKLKNGDVVEVD 61 Query: 63 GHSVQVV 69 G VV Sbjct: 62 GEKYVVV 68 >UniRef50_C8PB15 Putative uncharacterized protein n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PB15_9LACO Length = 81 Score = 85.1 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L LK E SG QAK + E V ++G +E R+ KI G + + Sbjct: 15 FVINGEFITLAQFLKEESIISSGGQAKWYLNENPVMLNGVLENRRGKKIHPGDQIVINKN 74 Query: 65 SV 66 Sbjct: 75 LY 76 >UniRef50_Q47Z52 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47Z52_COLP3 Length = 156 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 36/66 (54%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 H VELC LLK+ G +AK+ I+EG V ++G VE +KR K+ + F G Sbjct: 7 VIELNHQPVELCKLLKIANLVSGGGEAKVVISEGYVLLNGEVEYQKRKKVYHEDVIEFNG 66 Query: 64 HSVQVV 69 VQ++ Sbjct: 67 EVVQLL 72 >UniRef50_UPI000196B722 hypothetical protein CATMIT_00450 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B722 Length = 77 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 L ++ L +KL G ++SG +AKI I EG V V+G V+ R+ K+ G Sbjct: 6 KEVLIHTEYITLGQAMKLCGEAQSGIEAKIMIQEGHVLVNGEVDRRRGKKLRDGDVFEVD 65 Query: 63 GHSVQV 68 + Sbjct: 66 RRQYVI 71 >UniRef50_Q1ZHE9 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHE9_9GAMM Length = 106 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 36/67 (53%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT + V L +LKL G +AK I+EG V ++G VETRKR K+ AG V F Sbjct: 9 ATLVEIREEPVALYKILKLGNLVSGGGEAKQIISEGYVSLNGEVETRKRKKVYAGDMVYF 68 Query: 62 AGHSVQV 68 +Q+ Sbjct: 69 NEQYLQI 75 >UniRef50_P0AAS7 Uncharacterized protein ybcJ n=158 Tax=Gammaproteobacteria RepID=YBCJ_ECOLI Length = 70 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS Sbjct: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 Query: 61 FAGHSVQVVA 70 FAGHSVQVVA Sbjct: 61 FAGHSVQVVA 70 >UniRef50_B0RQY2 Putative uncharacterized protein n=15 Tax=Proteobacteria RepID=B0RQY2_XANCB Length = 131 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 35/64 (54%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 ++EL LLKL G ++SG Q K +A G V VDG E RK KI GQ V + Sbjct: 59 LDGEYIELNQLLKLAGIADSGGQGKAIVASGAVSVDGVQELRKTAKIRPGQLVQLDDVEI 118 Query: 67 QVVA 70 +V+A Sbjct: 119 RVLA 122 >UniRef50_B7CCH6 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCH6_9FIRM Length = 67 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + ++ L LLK SG QAK +A +V V+G E R+ KI G V G Sbjct: 2 EFELRDEYITLAQLLKACDVVYSGGQAKEYLASMEVFVNGVNENRRGKKIYHGDIVETNG 61 Query: 64 HSVQVV 69 ++V Sbjct: 62 IRIEVK 67 >UniRef50_D1VQP8 RNA-binding S4 domain protein n=7 Tax=Actinomycetales RepID=D1VQP8_9ACTO Length = 68 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 33/65 (50%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + + L LKL ESG K +AEG VKV+ VETR+ ++ G V+ A Sbjct: 3 EIKIRDEMIRLGQFLKLADLVESGGDLKPLLAEGLVKVNNEVETRRGRQLSRGDVVTLAD 62 Query: 64 HSVQV 68 SV+V Sbjct: 63 RSVRV 67 >UniRef50_D0BMB1 S4 domain-containing protein YaaA n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMB1_9LACT Length = 92 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + L LK +G QAK + E V VDG +E R+ K+ V Sbjct: 12 MTKIVTITEEFITLGQFLKHIDVITTGGQAKWYLQETVVFVDGEIENRRGRKLYDKTRVE 71 Query: 61 FAGHSVQVV 69 + VV Sbjct: 72 IPEEGIFVV 80 >UniRef50_B2THB6 S4 domain protein YaaA n=3 Tax=Clostridium botulinum RepID=B2THB6_CLOBB Length = 68 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 ++L LK G + G++AKI I EG +KV+G + ++ K+ AG + F Sbjct: 2 NKIKINTEIIKLDAFLKWSGIASLGSEAKIYIQEGLIKVNGEICLQRGKKLKAGDIIEFE 61 Query: 63 GHSVQVV 69 ++V Sbjct: 62 DEKFEIV 68 >UniRef50_C1ZC96 Uncharacterized conserved protein n=4 Tax=Bacteria RepID=C1ZC96_PLALI Length = 72 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 L LK +GW +G AK+ I EG+V V+G V+ R+ K+ G V + G +V Sbjct: 5 TLDQFLKQQGWVATGGHAKLVIQEGEVIVNGEVDLRRGRKMRVGDVVEWNGERAEV 60 >UniRef50_C4ZNZ6 RNA-binding S4 domain protein n=4 Tax=Bacteria RepID=C4ZNZ6_THASP Length = 74 Score = 83.1 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 42/69 (60%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MA + +++L LLK G ESG A A+ G VKVDG E+RKR K+ GQ VS Sbjct: 1 MAIRFEVRGEYIQLDQLLKAAGLVESGGAAHAAVENGLVKVDGKPESRKRAKLRPGQRVS 60 Query: 61 FAGHSVQVV 69 FAG +V++V Sbjct: 61 FAGEAVELV 69 >UniRef50_B4WNT6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNT6_9SYNE Length = 66 Score = 83.1 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LK+ SG +AK+ I G+V V+G +E R+ K+ V+ S V Sbjct: 4 DFIKLDQFLKIINVVRSGGEAKLIIRSGEVLVNGEMELRRGRKLYDEDIVTIEDTSFTV 62 >UniRef50_Q39ZH7 RNA-binding S4 n=5 Tax=Bacteria RepID=Q39ZH7_GEOMG Length = 65 Score = 83.1 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + +++L LK E SG +AKI IA+G+V+V+G VETR+ K+ G V G ++ Sbjct: 3 IETEYIKLDSFLKAENIVASGGEAKIIIADGEVRVNGEVETRRGRKLRVGDRVEAGGETL 62 Query: 67 QVV 69 V Sbjct: 63 VVE 65 >UniRef50_B2IY27 RNA-binding S4 domain protein n=6 Tax=Cyanobacteria RepID=B2IY27_NOSP7 Length = 84 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + ++L LKL G +G QAK+ I G V+V+G +ETR+ ++V G V+ G Sbjct: 1 MKKIRDNTIKLNQYLKLMGIVPTGGQAKLMIQGGDVQVNGMLETRRGRRLVPGDKVTIEG 60 Query: 64 HSVQV 68 +++V Sbjct: 61 KTLEV 65 >UniRef50_D2MMX5 S4 domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX5_9FIRM Length = 69 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 K ++ L + LK G ++G ++K+ I EG VKV+ VETR+ K+ G V++ G + Sbjct: 5 KQDYICLQNFLKFYGLVQTGGESKVVIQEGLVKVNQEVETRRGRKLYPGDEVTYQGKTFM 64 Query: 68 VV 69 V Sbjct: 65 VK 66 >UniRef50_C0W7H4 Putative uncharacterized protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7H4_9ACTO Length = 102 Score = 82.4 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 L + ++L LKL G E GA+A+IAI G V+V+G VETR+ + AG V Sbjct: 20 VLVRGE-IKLGQFLKLAGLVEDGAEARIAIQSGDVRVNGEVETRRGHHLAAGDVVEVE 76 >UniRef50_D0BT73 Putative uncharacterized protein n=9 Tax=Fusobacterium RepID=D0BT73_9FUSO Length = 71 Score = 82.4 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 29/67 (43%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 ++L LK +SG+QAK I +G+VKV+ VETR+ KI V Sbjct: 5 EKVKISTEFIKLDQFLKWLAVVDSGSQAKQVILDGKVKVNDEVETRRGRKIYPEYRVEIF 64 Query: 63 GHSVQVV 69 V Sbjct: 65 DRIYVVE 71 >UniRef50_A0KYH4 RNA-binding S4 domain protein n=13 Tax=Gammaproteobacteria RepID=A0KYH4_SHESA Length = 76 Score = 81.6 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 43/62 (69%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 +EL +LK++G S +G +AK I EG V V+G VETRKR K+VAG VSF G SVQ+ Sbjct: 13 EDFIELYKVLKVQGMSNAGGEAKHVIDEGLVTVNGEVETRKRKKVVAGDIVSFNGESVQI 72 Query: 69 VA 70 +A Sbjct: 73 IA 74 >UniRef50_A7FPF2 S4 domain protein n=12 Tax=Bacteria RepID=A7FPF2_CLOB1 Length = 68 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 ++L LK G + G++AK I G+VKV+G +E R+ K+ + F Sbjct: 3 EIKINSEIIKLDSFLKWSGATTLGSEAKFFIQNGEVKVNGEIEKRRGRKLKIDDLIEFNN 62 Query: 64 HSVQVV 69 + +++ Sbjct: 63 ETYKII 68 >UniRef50_A1RL52 RNA-binding S4 domain protein n=13 Tax=Shewanella RepID=A1RL52_SHESW Length = 79 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 43/62 (69%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 +EL +LK++G + +G +AK I GQV V+G +ETRKR KI+AG VSF G +VQ+ Sbjct: 16 EDFIELYKVLKVQGMTNAGGEAKHFIDAGQVTVNGEIETRKRKKIIAGDMVSFNGVTVQI 75 Query: 69 VA 70 +A Sbjct: 76 IA 77 >UniRef50_C7XXJ9 S4 domain-containing protein YaaA n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XXJ9_9LACO Length = 75 Score = 81.2 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + + L LLK EG +G AK + E QVK++G ++ R+ K+ V Sbjct: 4 SKVFQIDRDFITLGQLLKEEGIIPTGGAAKWFLKEHQVKINGDLDDRRGKKLYPNDQVEI 63 Query: 62 AG-HSVQVV 69 G SV++ Sbjct: 64 IGIESVKIE 72 >UniRef50_A9KPP3 RNA-binding S4 domain protein n=10 Tax=Bacteria RepID=A9KPP3_CLOPH Length = 71 Score = 81.2 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + + ++L LK G +SG +AK I EG VKV+G VE ++ KI G ++ F Sbjct: 2 EKIILREEFIKLGQALKAAGLVDSGVEAKDVITEGLVKVNGVVEYQRGKKIHGGDSIEFN 61 Query: 63 GHSVQVV 69 VQ+V Sbjct: 62 NEIVQIV 68 >UniRef50_A2SHW4 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SHW4_METPP Length = 83 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + L LLK G ++SG AK I GQV+VDG E R+ K+ AGQ V+ +G V Sbjct: 13 LRGEFITLDALLKATGLADSGGAAKQLIQSGQVQVDGREELRRGAKLRAGQVVAVSGARV 72 Query: 67 QVVA 70 +++A Sbjct: 73 RLLA 76 >UniRef50_A6GUC8 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=A6GUC8_9BURK Length = 84 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 37/67 (55%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + VEL +LK +GW SG +AK IA+G V V+G +ET+KR KIV G + F Sbjct: 16 NEVIINKEPVELYKILKFQGWLSSGGEAKNVIADGHVLVNGQIETQKRKKIVGGDVIEFD 75 Query: 63 GHSVQVV 69 G V Sbjct: 76 GVKYTVK 82 >UniRef50_D1J7E3 Putative uncharacterized protein n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7E3_MYCHP Length = 70 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 24/67 (35%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 ++L LK +G AK + ++ ++G + + KI G TV Sbjct: 2 EIEITGEFIKLSQFLKKIDVCPTGGMAKYFVQVHRILINGNLANGRNAKIYPGDTVWIDD 61 Query: 64 HSVQVVA 70 + + Sbjct: 62 NVYLIKG 68 >UniRef50_Q46KV3 RNA-binding S4 n=6 Tax=Cyanobacteria RepID=Q46KV3_PROMT Length = 72 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 ++L LK G ++G +AK+ I G++ V+G VETR+ K++ G +SFA + V Sbjct: 1 MKLDQFLKFMGIVQTGGEAKMIIKSGKISVNGMVETRRGRKLIDGDQISFANETYIV 57 >UniRef50_D1AW62 RNA-binding S4 domain protein n=2 Tax=Bacteria RepID=D1AW62_STRM9 Length = 67 Score = 80.1 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 33/66 (50%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 +++L LLK E+G+ AK I EG+V VD VE R+ KI G V F G Sbjct: 2 EIKINTEYIKLDQLLKYANLVENGSSAKEMILEGRVLVDNEVEVRRGRKIYRGMIVEFEG 61 Query: 64 HSVQVV 69 V+V Sbjct: 62 ERVEVK 67 >UniRef50_A4J0F2 RNA-binding S4 domain protein n=3 Tax=Bacteria RepID=A4J0F2_DESRM Length = 70 Score = 79.7 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + L LK + SG ++KI I G VKV+G E R+ K+ + V Sbjct: 1 MTQPIKVNKD-IRLDQFLKWANITGSGGESKILIQSGHVKVNGITEIRRGKKLQSNDIVE 59 Query: 61 FAG 63 G Sbjct: 60 VDG 62 >UniRef50_A7BD09 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD09_9ACTO Length = 76 Score = 79.7 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M+T ++ ++L +KL +E GAQA+ I G V V+G VETR+ + AG V Sbjct: 1 MSTPTIPVRGEIKLGQFIKLASLAEDGAQARELIQAGDVTVNGEVETRRGHHLSAGDLVE 60 Query: 61 FA 62 Sbjct: 61 VD 62 >UniRef50_Q2YZS1 Putative uncharacterized protein n=6 Tax=Bacteria RepID=Q2YZS1_9DELT Length = 81 Score = 79.7 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 K +EL +LK +SG +AK IA+G V+V+G VE RK KI++G + F Sbjct: 9 TNIVEIKEKSIELYKILKFVNIVQSGGEAKFVIADGLVRVNGEVEIRKGKKIISGDIIEF 68 Query: 62 AGHSVQV 68 Q+ Sbjct: 69 EKEKFQI 75 >UniRef50_Q02WH9 S4-like RNA-binding protein n=6 Tax=Bacilli RepID=Q02WH9_LACLS Length = 120 Score = 79.3 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAE--GQVKVDGAVETRKRCKIVAGQT 58 M + L + ++ L +LK G +G QAKI +AE G + +G VE R+ K+ G Sbjct: 1 MKKYILFE-EYIALGQVLKELGLISTGGQAKIFLAENEGNIFYNGEVENRRGKKLRDGDL 59 Query: 59 VSFAGHSVQV 68 + F ++V Sbjct: 60 LEFPTFDLKV 69 >UniRef50_Q04HR4 S4-like RNA binding protein n=47 Tax=Lactobacillales RepID=Q04HR4_OENOB Length = 73 Score = 79.3 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQ--VKVDGAVETRKRCKIVAGQTVS 60 + L LLK+E SG AK + E V+G E R+ K+ G V Sbjct: 2 QKVQINTEFITLGQLLKIEDIVSSGGSAKFFLKENANSFFVNGESENRRGRKLYPGDLVK 61 Query: 61 F 61 Sbjct: 62 I 62 >UniRef50_C2EAX7 RNA-binding S4 protein n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EAX7_9LACO Length = 81 Score = 79.3 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEG--QVKVDGAVETRKRCKIVAGQTVS 60 K P + L LLK+E SG QAK + E ++ V+G E R+ K+ G V Sbjct: 9 KEVRLKTPCITLGQLLKIENIVSSGGQAKYFLEEHADEIFVNGEHENRRGKKLYPGDEVV 68 Query: 61 FAGHSVQVV 69 A V+ Sbjct: 69 VADQGKFVM 77 >UniRef50_Q1IXU2 RNA-binding S4 n=4 Tax=Bacteria RepID=Q1IXU2_DEIGD Length = 66 Score = 78.9 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + ++L D LKL G ++G +AK + G+V+V+G +ETR+R K+ G V +AG V Sbjct: 3 EERDTIDLQDFLKLRGLVDTGGEAKFRVQGGEVQVNGEIETRRRKKLRRGDIVEYAGERV 62 Query: 67 QV 68 +V Sbjct: 63 RV 64 >UniRef50_A2BWE9 Putative uncharacterized protein n=3 Tax=Bacteria RepID=A2BWE9_PROM5 Length = 82 Score = 78.5 bits (193), Expect = 7e-14, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 ++L LK + SG +AKI I GQVKV+G +ET++ K+V G V F Sbjct: 23 KTMKLDQFLKWHNFVSSGGEAKIFIKSGQVKVNGEIETKRGRKLVKGDKVMF 74 >UniRef50_Q1K491 RNA-binding S4 n=2 Tax=Desulfuromonadales RepID=Q1K491_DESAC Length = 70 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 44/66 (66%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 F L H ++EL +LLK+ G SG AK I +G+V+VDG VE+RKRCKI +GQ V F+G Sbjct: 5 FDLEGHDYIELNNLLKVTGLCHSGGLAKRLIEDGEVRVDGQVESRKRCKIRSGQVVEFSG 64 Query: 64 HSVQVV 69 + V Sbjct: 65 EQIDVK 70 >UniRef50_C4V1P6 Putative uncharacterized protein n=2 Tax=Selenomonas RepID=C4V1P6_9FIRM Length = 77 Score = 77.0 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + ++L LKL G SG + + + EG + + ET +R K+V G ++ Sbjct: 3 IEIQTDMIQLDQFLKLAGAVSSGGEVRALLTEGMILRNNVPETARRRKLVPGDVITIN 60 >UniRef50_A4FA99 RNA-binding S4 n=8 Tax=Bacteria RepID=A4FA99_SACEN Length = 71 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + + L LLKL G +E GA AK + EG+V+V+ AVETR+ ++ G VS Sbjct: 3 EVEIRDGSIRLGQLLKLAGVAEHGADAKALLEEGEVRVNDAVETRRGRQVGPGDLVSLGE 62 Query: 64 HSVQVVA 70 +QVV Sbjct: 63 DVIQVVG 69 >UniRef50_Q3IFL5 Putative uncharacterized protein n=3 Tax=Alteromonadales RepID=Q3IFL5_PSEHT Length = 127 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 31/55 (56%) Query: 14 LCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 LC LLK+ E G QAK IAEG V V+ + T KR K+ +G + F G Q+ Sbjct: 17 LCKLLKVLNLVEGGGQAKNLIAEGYVGVNHEICTIKRKKLYSGDILEFDGELFQL 71 >UniRef50_C0QLP4 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLP4_DESAH Length = 111 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + VEL +LK E SG +AK I +G V ++G VETRKR KI AG + F Sbjct: 46 VQIEREPVELYKILKFENLVMSGGEAKHVITQGMVTLNGQVETRKRKKIFAGDVILFGQE 105 Query: 65 SVQV 68 +++ Sbjct: 106 VLKI 109 >UniRef50_C9KQB0 Conserved domain protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQB0_9FIRM Length = 79 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 ++L LK G S + K IAE ++K +G E+ +R ++ G + Sbjct: 4 EEVKIDTETIQLDQFLKWAGVLGSCGETKALIAERRIKRNGETESARRRQLHDGDVIEVE 63 Query: 63 G 63 G Sbjct: 64 G 64 >UniRef50_A0AEJ0 Complete genome n=15 Tax=Listeria RepID=A0AEJ0_LISW6 Length = 94 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 +A V L LL++ +G AK ++E + ++G + R+ K+ G + Sbjct: 23 LAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGEQDNRRGKKLRNGDVIL 82 Query: 61 FAGH 64 G Sbjct: 83 VPGV 86 >UniRef50_Q6KIT5 Expressed protein n=1 Tax=Mycoplasma mobile RepID=Q6KIT5_MYCMO Length = 68 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 K + L LK+ +G ++K I E V ++G + KI V Sbjct: 3 KIEIKDDFITLSQFLKISSLISTGGESKNFIIENNVNLNGKRIFERNKKIYKNDIVEINN 62 Query: 64 HSVQVV 69 Q++ Sbjct: 63 KKYQII 68 >UniRef50_B1AI65 S4 domain protein YaaA n=15 Tax=Ureaplasma RepID=B1AI65_UREP2 Length = 72 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 +V L LK+ G +G QAK + E +V VD +E R+ K+ + Sbjct: 2 KKIFISTEYVTLNQFLKIAGLINNGGQAKFWLLENKVMVDEKIENRRGRKLYDQMIIKIK 61 Query: 63 GHSVQVV 69 Q+V Sbjct: 62 NQLYQIV 68 >UniRef50_Q0IAV4 S4 domain protein n=14 Tax=Cyanobacteria RepID=Q0IAV4_SYNS3 Length = 74 Score = 75.8 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L LK GW +G +AK+ I G+V V+G +E R+ ++ AG V S +V Sbjct: 10 MRLDQFLKWMGWVATGGEAKLRIQGGEVLVNGDLEQRRGRQLKAGDRVQMGVDSAEV 66 >UniRef50_B1Y6F1 RNA-binding S4 domain protein n=32 Tax=Bacteria RepID=B1Y6F1_LEPCP Length = 74 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 31/67 (46%), Positives = 40/67 (59%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + H+ L LLK G ++SG AK IA+G V++DG E RK CK+ AGQ V+FAG Sbjct: 5 EFTLRGDHIGLDALLKATGLADSGGAAKALIAQGLVQIDGQTELRKTCKVRAGQCVTFAG 64 Query: 64 HSVQVVA 70 V V A Sbjct: 65 SRVLVAA 71 >UniRef50_A6SVF2 Uncharacterized conserved protein n=8 Tax=Burkholderiales RepID=A6SVF2_JANMA Length = 73 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 37/67 (55%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 VEL LLKL G +SG K+ +A G+VKVDG E RK CKI AGQ V+ Sbjct: 5 EFELNDEFVELNQLLKLVGICDSGGAGKVLVASGKVKVDGQTELRKTCKIRAGQVVALGD 64 Query: 64 HSVQVVA 70 ++V A Sbjct: 65 VRIKVRA 71 >UniRef50_C8VV99 RNA-binding S4 domain protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VV99_DESAS Length = 71 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M K + L LK +G QAKI I G VKV+ ++E ++ + G V Sbjct: 1 MNKQIKVKG-PIRLDQFLKWATIVSTGGQAKILITSGGVKVNQSIEIKRGRNLKNGDIVQ 59 Query: 61 FAGHSVQV 68 V Sbjct: 60 VGDILYHV 67 >UniRef50_Q05Y91 RNA-binding S4 n=3 Tax=Bacteria RepID=Q05Y91_9SYNE Length = 60 Score = 75.0 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L LK +GW +G +AK+ I G+V+V+G+VETR+ ++ V+ +V Sbjct: 1 MRLDQFLKWQGWVATGGEAKMRIQAGEVEVNGSVETRRGRQLQLADRVTLGSDQAEV 57 >UniRef50_Q30QF2 RNA-binding S4 n=2 Tax=Campylobacterales RepID=Q30QF2_SULDN Length = 67 Score = 74.7 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 K ++EL LLK+ +SGA+AK+ +A+G V+ +G +E RKR KI G + A Sbjct: 2 KYELKDEYIELFKLLKVLDLVDSGAEAKLIVADGHVRRNGEIELRKRAKIRQGDVIEVAD 61 Query: 64 HSVQV 68 +++V Sbjct: 62 VTIEV 66 >UniRef50_B3PLR9 Putative uncharacterized protein n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PLR9_MYCA5 Length = 76 Score = 74.7 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 ++L LLK SG +AK + +K++G + + K+ G + Sbjct: 2 EIEIYGDSIKLSQLLKKLDIVASGGKAKFFVKSHVIKINGKIAEGRNSKVHVGDVIWIDD 61 Query: 64 HSVQVVA 70 + ++VA Sbjct: 62 NVYKLVA 68 >UniRef50_Q98RK5 Putative uncharacterized protein MYPU_0030 n=1 Tax=Mycoplasma pulmonis RepID=Q98RK5_MYCPU Length = 73 Score = 73.9 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 L K + + L+K +SG Q K + QVK++G + + K+ G T+ Sbjct: 3 ILIKGEFLTIGQLIKKIKLIDSGGQIKQFMQSHQVKINGKLINTRNTKVRVGDTIWIDDQ 62 Query: 65 SVQVVA 70 + A Sbjct: 63 LYTIKA 68 >UniRef50_B2A2Y8 S4-like RNA binding protein n=2 Tax=Firmicutes RepID=B2A2Y8_NATTJ Length = 73 Score = 73.9 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 ++ L LLK +G + K + E ++V+G ++ K+ G V+ Sbjct: 3 KRKVEINSEYITLGQLLKYVNIVATGGEVKHFLKEEDIEVNGEKTEQRGKKLYPGDIVNL 62 Query: 62 AGHSVQVV 69 + Sbjct: 63 KDQEEIIE 70 >UniRef50_C1D9I9 Putative RNA-binding protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9I9_LARHH Length = 77 Score = 73.1 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 39/70 (55%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M V LC+LLK+ G +SG K +A G V+VDG E RK CKI AGQTVS Sbjct: 6 MNEVYQLDREFVPLCNLLKMCGVVDSGGAGKQLVATGVVEVDGQTELRKTCKIRAGQTVS 65 Query: 61 FAGHSVQVVA 70 G +++V Sbjct: 66 GPGFTIRVEG 75 >UniRef50_D1BQ79 RNA-binding S4 domain protein n=3 Tax=Veillonella RepID=D1BQ79_VEIPT Length = 77 Score = 73.1 bits (179), Expect = 3e-12, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 34/68 (50%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 ++++ LLKLEG E+G Q K I EG + ++G V T KR K G +S Sbjct: 4 KQQVPIHTEYIQIDQLLKLEGIIETGGQIKSFIDEGILTLNGQVVTEKRKKCRVGDVISC 63 Query: 62 AGHSVQVV 69 G V ++ Sbjct: 64 EGLDVDLI 71 >UniRef50_A3NBX1 Conserved domain protein n=33 Tax=Burkholderia RepID=A3NBX1_BURP6 Length = 73 Score = 73.1 bits (179), Expect = 3e-12, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 38/62 (61%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 VEL +LLKL G ++SG AK+ +A G VKVDGAVE RK CK+ AGQ V + Sbjct: 8 LTGEFVELHNLLKLTGLADSGGSAKMIVASGAVKVDGAVELRKTCKVRAGQVVLLGDTRI 67 Query: 67 QV 68 V Sbjct: 68 AV 69 >UniRef50_Q47ZU6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZU6_COLP3 Length = 124 Score = 72.3 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 +EL LLK+ G +AK I+EG++ V+ VE +KR KI G + F G Sbjct: 6 IIDICVEPIELYKLLKISNIVGDG-EAKTLISEGKILVNKKVEVQKRKKIRRGDVIDFDG 64 Query: 64 HSVQV 68 +++V Sbjct: 65 KTIEV 69 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 72.3 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + + L L G S +A I +G VKV+ V T KI V+F VQ+ Sbjct: 257 NEPIRLNKFLSNAGVC-SRREADEFIQKGAVKVNDVVVTELGTKITRQDVVTFNEKPVQI 315 Query: 69 V 69 Sbjct: 316 E 316 >UniRef50_C5BW46 RNA-binding S4 domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BW46_BEUC1 Length = 77 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + + L LLKL G +E GAQA+ +A+ V+VDG E R+ ++ G V+ Sbjct: 8 EISIRDESIRLGQLLKLAGIAEDGAQARELLADDAVQVDGVAENRRGAQVHRGALVAVD 66 >UniRef50_C5J5G0 Putative uncharacterized protein MCJ_000030 n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J5G0_MYCCR Length = 72 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + ++ + LLK E + SG ++K + E VK++G T + K+ V Sbjct: 2 IVRIRGSYITIGQLLKKENFVNSGGESKFFLLENVVKINGIRVTTRSTKVRIDDFVWIND 61 Query: 64 HSVQVVA 70 +++ A Sbjct: 62 ELIEIKA 68 >UniRef50_A5INP4 S4 region, YaaA n=62 Tax=Staphylococcus RepID=A5INP4_STAA9 Length = 78 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + + + L LK EG ESG QAK + + +V ++G ETR+ K+ + Sbjct: 1 MVQEVVVEGD-INLGQFLKTEGIIESGGQAKWFLQDVEVLINGVRETRRGKKLEHQDRID 59 Query: 61 FAG 63 Sbjct: 60 IPE 62 >UniRef50_C9LP64 Conserved domain protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LP64_9FIRM Length = 72 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 +++L LK E SG + I ++ ++G + KR KI G +S Sbjct: 2 KEIEIYGDYIQLDQFLKKENIISSGGETGDFIKNHEIFLNGIIIQEKRKKIRLGDDLSLD 61 Query: 63 GHSVQVV 69 G +++ Sbjct: 62 GEVYKII 68 >UniRef50_Q4A746 Putative uncharacterized protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A746_MYCS5 Length = 71 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAE--GQVKVDGAVETRKRCKIVAGQTVSFA 62 +++L LLK +SG AK + +V ++G T + K+ G + Sbjct: 3 IKIYGEYIKLSQLLKKIDEVDSGGTAKFFLQNKINKVLINGKQTTERNKKVYPGDIIWIN 62 Query: 63 GHSVQVV 69 +V Sbjct: 63 NIVHKVE 69 >UniRef50_C7NEZ0 Uncharacterized conserved protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NEZ0_KYTSD Length = 76 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTV 59 + L +LKL + GA A+ I G V +D V T++ K+ GQ V Sbjct: 10 VQIADEFITLGQVLKLANVVDDGAIAREVIQAGDVTLDAEVCTQRGRKVRPGQVV 64 >UniRef50_D2SGH5 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SGH5_9ACTO Length = 74 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 27/55 (49%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + L LLKL +GAQ K + G V+V+G E R+ ++ G VS G Sbjct: 13 EESIRLGQLLKLVDAVPTGAQVKDVLLTGTVRVNGEPEERRGRQLRKGDVVSVEG 67 >UniRef50_C4XFM1 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFM1_MYCFE Length = 73 Score = 69.7 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M K + L LLK G ++G AK + ++ ++ + K+ G V Sbjct: 1 MNNEIYLKDDVITLGQLLKKIGLIDTGGSAKGYLLSNKILINNRTPNGRSAKVKIGDIVW 60 Query: 61 FAGHSVQVV 69 + Sbjct: 61 INNKVFMIK 69 >UniRef50_C6XTU3 RNA-binding S4 domain protein n=4 Tax=Sphingobacteriaceae RepID=C6XTU3_PEDHD Length = 68 Score = 69.7 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + + L LLK +SG +A+ + +G VK +G V+ RKR K+ G + F G Sbjct: 3 KFKLEGEFIPLIQLLKATALVQSGGEAQTVVEDGLVKYNGTVDYRKRLKVRVGDVIDFMG 62 Query: 64 HSVQVV 69 + V+ Sbjct: 63 QKITVI 68 >UniRef50_C7REZ7 S4 domain-containing protein n=5 Tax=Anaerococcus RepID=C7REZ7_ANAPD Length = 68 Score = 69.3 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 + ++L DLLK +G AK+ I E V ++G+ K+ G TV F Sbjct: 2 EKIEFESEEIKLKDLLKATNIIPTGGLAKVIIKEEGVLLNGSPCFVAGKKLHKGDTVEFD 61 Query: 63 GHSVQVV 69 S+ +V Sbjct: 62 DFSITIV 68 >UniRef50_A4VYF8 Uncharacterized conserved protein n=68 Tax=Streptococcus RepID=A4VYF8_STRSY Length = 127 Score = 69.3 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH--SV 66 ++ L LLK G SG K + E + +G E R+ KI G ++ H S+ Sbjct: 7 DDYITLQALLKTTGILHSGGAIKGFLEENTILFNGEDEKRRGKKIRVGDVITLPDHNTSI 66 Query: 67 QVVA 70 +VA Sbjct: 67 TIVA 70 >UniRef50_A8MEA2 RNA-binding S4 domain protein n=2 Tax=Alkaliphilus RepID=A8MEA2_ALKOO Length = 71 Score = 69.3 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + +++L LLKL SG AK+ I G+VKV+ ++ KI G V F Sbjct: 4 KVEVKIEGEYIKLDQLLKLAEVVGSGGHAKLVILNGEVKVNEQTIVQRGKKIRVGDKVLF 63 Query: 62 AGHSVQVV 69 ++V Sbjct: 64 QDIEIEVK 71 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 67.7 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + + L L G S +A + I +G++ V+G V T +I V + V++ Sbjct: 201 NEPIRLNKFLSNAGVC-SRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYKDKRVEI 259 Query: 69 V 69 Sbjct: 260 E 260 >UniRef50_C0VZC3 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZC3_9ACTO Length = 80 Score = 67.3 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + + L LLKL E G +A+ AI G V +D T++ ++ GQ VS Sbjct: 7 PVITVTGTIRLGQLLKLANLVEDGGEARAAIQGGFVYIDDEQCTQRGKQLQDGQIVSLDF 66 Query: 64 HSV 66 Sbjct: 67 EDY 69 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 67.3 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVS 60 TF + + L LL G + S A+ I G VKV+G V T K+ V+ Sbjct: 8 TTFKPDEDGLIRLQKLLAHRGLA-SRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVT 66 Query: 61 FAGHSVQVVA 70 G +V V Sbjct: 67 VDGKTVPVEP 76 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 67.0 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 + + + L L G S A IA G+VKV+GAV + +++ V Sbjct: 196 TSPLVEAGEPIRLNKFLSNSGLC-SRRTADQYIAAGRVKVNGAVVSELGSQVLPTDQVMV 254 Query: 62 AGHSVQVVA 70 V + A Sbjct: 255 DDKPVTLEA 263 >UniRef50_D0WQU2 RNA-binding S4 n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQU2_9ACTO Length = 76 Score = 67.0 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF---AGHSVQ 67 + L +K + SGA+A + G++ V+G VETR+ ++ G V+ G ++ Sbjct: 9 PIRLGQFVKYASLAGSGAEAAELVRAGEIVVNGVVETRRGHRLSDGDVVAMDLPNGRRIE 68 Query: 68 VV 69 V Sbjct: 69 VR 70 >UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9Y2_BLASP Length = 255 Score = 64.6 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M + + + L L G + S +A I G ++V+G + T+ + + Sbjct: 5 MNQKKIEEEKFIRLNHYLSNAGIT-SRREADKLIQSGLIEVNGKIVTKFGTVVHKNDVIK 63 Query: 61 FAGHSVQ 67 F G ++ Sbjct: 64 FHGSRIK 70 >UniRef50_B5Y6P2 Conserved domain protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6P2_COPPD Length = 77 Score = 63.5 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 +EL LK+ + +G +AK I +G V V+G VETR+ K+ V V Sbjct: 9 MIELQQFLKIV-LNVTGGEAKHIIQDGLVCVNGVVETRRSRKLAQEDVVEVNLEEV 63 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 61.6 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L L G S +A I GQV V+G V KI+ V F V + Sbjct: 317 TEPLRLNKFLANAGVC-SRREADDFILAGQVTVNGEVINELGTKILRTDEVKFQDKLVSL 375 Query: 69 V 69 Sbjct: 376 E 376 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 61.6 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 K + L L G S +A IA GQV+V+G V + ++ V G Sbjct: 3 VSDKSSLIRLNRYLARAGVCPSRRKADELIASGQVRVNGQV-AQLGMRVGPDDIVEVNGV 61 Query: 65 SV 66 V Sbjct: 62 RV 63 >UniRef50_Q8TYA5 Predicted RNA-binding protein containing the S4 domain n=1 Tax=Methanopyrus kandleri RepID=Q8TYA5_METKA Length = 79 Score = 60.4 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 L L+ G +ES +AK + G+V+V+G + + + G + G +V+V Sbjct: 6 RLDAFLRDVGLAESRREAKRLVESGRVRVNGKLVRKPWWLVSPGDEIEVDGVTVRVE 62 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 58.1 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L + G S +A I EG VKV+G V T K+ G +V + + Sbjct: 329 IRLNKYISNSGIC-SRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNKVL 382 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 57.3 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 + L L G S A I +G V V+G + T+ + +S G V + Sbjct: 223 PLRLNKFLASSGVC-SRRVADQLIVDGHVSVNGEIVTQLGKHVTREDFISVDGKPVSIE 280 >UniRef50_C0BJ48 RNA-binding S4 domain protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BJ48_9BACT Length = 255 Score = 57.3 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 V L L G S +A I G V V+G + T ++ V F G VQ Sbjct: 20 SETVRLNKFLSNAGLC-SRREADSHIEMGLVHVNGKIITEMGYQVKPTDEVKFDGARVQ 77 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 56.2 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQV 68 + L L G S +A++ IAEG+V V+G V T K+ V F GH V + Sbjct: 10 IRLQKFLSGAGVC-SRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTL 66 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 55.4 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L + G S +A I+ GQ+ V+G + T K+ V + Sbjct: 318 EETDEIRLNRYIANAGIC-SRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKYGKK 374 >UniRef50_A9NE67 Putative uncharacterized protein n=2 Tax=Acholeplasma laidlawii RepID=A9NE67_ACHLI Length = 71 Score = 55.0 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + + LLK + SG + K + E +V ++ A K+ KI G V+ G+ Sbjct: 7 FELEGEFITIAQLLKALDYIGSGGETKYFLYEHKVLLNDAEVYEKKKKIKKGDVVTINGN 66 Query: 65 SVQVV 69 + + Sbjct: 67 KILIK 71 >UniRef50_A1VDC0 Pseudouridine synthase n=3 Tax=Desulfovibrio vulgaris RepID=A1VDC0_DESVV Length = 292 Score = 55.0 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 6 LGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGH 64 + L L G S QA IA G+V+V+G V T ++ + G Sbjct: 40 EVEDGGTRLNKALSGAGVC-SRRQADTFIAGGKVRVNGEVVTEMGRRVFPATDRIEVEGR 98 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 54.2 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + L + G S +A I +G V+V+GAV T ++ V F G Sbjct: 132 KEVPKETIRLNKYIANSGIC-SRREADELITQGLVQVNGAVVTEMGYQVQKTDKVIFDGQ 190 Query: 65 SVQ 67 + Sbjct: 191 GIT 193 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 53.5 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L + G S +A IA G V V+G T K+ V F G +Q Sbjct: 70 IRLNKYIANAGIC-SRREADTYIAAGNVTVNGKTITEMGYKVQPTDEVRFDGRLLQ 124 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 53.5 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L + G S +A I G V+V+G + T K+ V F G + Sbjct: 72 IRLNKYIANSGVC-SRREADTYIEHGSVEVNGNLVTEMGYKVQPDDVVRFDGTGIT 126 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 53.5 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 V L LL G S ++ I G+V+VDG T K++ ++ G Sbjct: 35 VEIPEEPVRLQKLLSQAG-VASRRASEDLIKRGRVQVDGETVTEMGLKVLPSARITVNGQ 93 Query: 65 SV 66 + Sbjct: 94 RI 95 >UniRef50_A6ES27 Pseudouridylate synthase (Ribosomal large subunit pseudouridine synthase B) n=3 Tax=Bacteroidetes RepID=A6ES27_9BACT Length = 289 Score = 52.7 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 AT + K + L + G S +A I G V V+G + K+ V F Sbjct: 50 ATKNTNKQEGIRLNKYISNSGIC-SRREADTYIETGLVSVNGKIVNEMGYKVKLEDDVRF 108 Query: 62 AGHSV 66 G + Sbjct: 109 DGRRI 113 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 51.5 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSV 66 + L L G + +A+ I G V V+G T K+V G VS G +V Sbjct: 2 DEAIRLQRYLSQCGVAA-RRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAV 59 >UniRef50_Q6AQ24 Related to ribosomal large subunit pseudouridine synthase B n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ24_DESPS Length = 229 Score = 51.5 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 V L L G S +A+ I +G+V ++G KI ++ G V+ Sbjct: 99 PVRLQKFLAASGIC-SRRKAEQLILDGRVTLNGETVLILGTKITPDIDKITVDGKLVK 155 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 51.5 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L + G S +A I IA G +KV+G K+ VSF G + Sbjct: 97 DDNSIRLNRYISNSGVC-SRREADIFIAAGSIKVNGKAVVEMGYKVALSDVVSFDGVVL 154 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 51.5 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 + L +L G S A+I I G+V+V+G + T + ++ + G + Sbjct: 86 GEGIRLQKVLAQAG-VASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVRIN 144 Query: 68 V 68 + Sbjct: 145 I 145 >UniRef50_A5FK52 Ribosomal large subunit pseudouridine synthase B n=3 Tax=Flavobacteriales RepID=A5FK52_FLAJ1 Length = 302 Score = 51.2 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L + G S A + I G VKV+G T + V+F G ++ Sbjct: 67 SDEIRLNKYISNSGVC-SRRDADLYIQSGNVKVNGVPVTEMGYLVKLNDVVNFDGVTLT 124 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 51.2 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + + L LL G S A+ IAEG+V V+G + + G V+ Sbjct: 2 NEPIRLHKLLAQMG-VASRRAAERMIAEGRVSVNGRIVNTPGAMASPEDEIRVDGKLVR 59 >UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia RepID=B1ZYG8_OPITP Length = 266 Score = 51.2 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQV 68 + L L G S A+ IA G+V V+GA + K+ G V+ G V+ Sbjct: 5 EPIRLQKYLADAGVC-SRRAAEALIASGEVWVNGAP-AQVGQKVTPGVDRVTTGGKPVRT 62 Query: 69 VA 70 A Sbjct: 63 TA 64 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 50.8 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVS 60 + L + G S +A I G V V+G V + KI V Sbjct: 227 NAPVQKDDGLIRLNRYISNSGIC-SRRKADELIEAGVVSVNGEVVSELGHKIDPVKDQVR 285 Query: 61 FAGHSVQ 67 + G ++ Sbjct: 286 YNGELLK 292 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 50.8 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 62 L + G S +A IA G + V+G + T K+ G TV + Sbjct: 401 NDGTTRLNRFIANSGVC-SRREADELIAHGDISVNGKIVTEMGYKVKEGDTVKYG 454 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 50.8 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 L +L G + S A+ I +G+VKV+G V K+V+ + G + + Sbjct: 17 RLQKVLAQAGIA-SRRHAEEIILQGRVKVNGEVIRTLGTKVVSTDRIVVDGRLLSI 71 >UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSN6_9PROT Length = 243 Score = 50.4 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 20/55 (36%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L L G S +AK I +G V V+G + + V F G Sbjct: 1 MRLDSYLVEAGHVRSRERAKKVIGDGYVWVNGVQVRKAGRSLQPTDRVEFRGEDF 55 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 50.4 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 + L + G + S +++ I +G+V V+G V TR KI TV G + Sbjct: 1 MRLQKFMSRAGIA-SRRKSEELIQQGRVTVNGQVITRLGTKINPDTDTVKVDGEPIT 56 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 50.0 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L +L G + A I G+V V+G ++ G V + G V Sbjct: 8 RLVKILSAAGIASRRG-AGDLIKAGRVTVNGETVFEPGFRVAPGDRVEYDGVPV 60 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 50.0 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 V L + G S A + I+ G V V+G V T ++ V F G Sbjct: 154 VRLNKYIADAGIC-SRRNADMYISAGNVTVNGEVMTTLGYRVKPTDEVRFDGK 205 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 50.0 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 L L +G S + ++ I EG+V ++G V T K+ V+ G V Sbjct: 71 RLQKWLAEQGLC-SRREGEVWIQEGRVSINGEVVTELGVKVAKRDRVAVDGQLVT 124 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 50.0 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 L ++ G S +A+ I EG+VKV+G V T K+ + G V+ Sbjct: 3 RLQKVIAHAG-VASRRKAEELIKEGKVKVNGKVVTELGVKVTGSDQIEVNGLKVE 56 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 49.6 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKI-VAGQTVS 60 T P + L + L G + S +A I +G+V V+G V K+ V Sbjct: 33 KTEQNINDPIIRLNKFIALCGEA-SRRKADEMIEQGEVMVNGKVVMELGYKVDRRADEVV 91 Query: 61 FAGHSV 66 G + Sbjct: 92 VNGKKL 97 >UniRef50_B7FTM7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FTM7_PHATR Length = 252 Score = 49.6 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 + L LL +GW S +A I +G VKV+G V + ++ TV +V V A Sbjct: 8 IRLNKLLAHQGWC-SRREANRFIEQGLVKVNGVVS--RDARVAPTDTVELLPQAVTVQA 63 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 49.2 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 V + L G S +A+ I EG+VKV+G V K+ V G V+ Sbjct: 4 VRINKFLSEAG-VASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKPVK 59 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 49.2 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 L L G S A+ I G+V V+ T ++ G V+ G V Sbjct: 5 RLQKYLARAG-VASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDLVTVDGTLVT 59 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 49.2 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 + L + + G+ S +A++ I EG+VKV+G T + K+ V G + V Sbjct: 7 IRLQKFIAMSGYC-SRRKAEVLINEGKVKVNGIKVTEQGLKVSTEDRVMVNGILINVE 63 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 48.9 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L L G S QA+ I +G+VKV+ T + G V FAG ++ Sbjct: 1 MRLAKYLAESGI-SSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGKIIE 55 >UniRef50_Q26G32 Ribosomal large subunit pseudouridine synthase F n=2 Tax=Flavobacteria RepID=Q26G32_9BACT Length = 326 Score = 48.9 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L + G S A I I G V V+G + ++ V F G ++Q Sbjct: 90 DDGTIRLNKYISNSGIC-SRRDADIYIKAGSVTVNGKPVSEMGYRVKLTDEVKFDGQNIQ 148 >UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F n=4 Tax=Flavobacteriales RepID=A0M7H0_GRAFK Length = 295 Score = 48.5 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 M L + L + G S A + IA G V V+G T ++ V Sbjct: 52 MEKSPLTNSDGIRLNKYIANSGVC-SRRDADMYIAAGNVTVNGKSITEMGYRVKLEDDVR 110 Query: 61 FAGHSV 66 F G + Sbjct: 111 FDGRRL 116 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 48.5 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L + G S +A IA+G V V+G V T K+ V + G + Sbjct: 203 RLNKYIANSGIC-SRREADDLIAKGLVSVNGKVVTELGLKVSKFDRVVYQGKKI 255 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 48.1 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L G S +A I G+V ++G + + +G TV V+ Sbjct: 44 RINRYLAHCGLC-SRREADRWIQAGRVSINGQLIEAPGVIVKSGDTVMVDDKLVE 97 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 48.1 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQV 68 + L L G + K I+ G+V V+G K++ V+ G + Sbjct: 24 TMRLQRFLARAGVASRRGSEK-LISAGRVCVNGKQVRVLGTKVMPQYDHVTVDGKEYVL 81 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 48.1 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 L +L S +A+I I E ++KV+G + + K+ + ++ + Sbjct: 3 RLQKVLAYAN-VASRRKAEILILEKRIKVNGKIISELGTKVSSSDIITLDDKPIT 56 >UniRef50_C9M8T9 RNA pseudouridine synthase n=2 Tax=Synergistaceae RepID=C9M8T9_9BACT Length = 241 Score = 48.1 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 V L L G S + + I G+V V+G + + ++ G V+ V V A Sbjct: 2 TVRLNKYLASCG-VGSRRKVEQLITAGRVTVNGYLVSDLGHQVEDGDAVAVDDVEVHVEA 60 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 48.1 bits (114), Expect = 9e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAG 63 + + L L G S + I G+V VDG V T KI Q + G Sbjct: 16 VDDESHLIRLQKFLAATGL-GSRRHCEEYIETGRVSVDGDVITELGAKIDPETQFIEVDG 74 Query: 64 HSVQVVA 70 V++ Sbjct: 75 ERVRLQP 81 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 48.1 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKI-VAGQTV 59 M + + L L G + ++ K I GQ+ ++G V + K+ V Sbjct: 1 MTVYVERNINMIRLDKFLSEMGL-GTRSEVKKLIKTGQIAINGTVAAKPETKVDTDADEV 59 Query: 60 SFAGHSVQ 67 S G V+ Sbjct: 60 SVNGRIVK 67 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 47.7 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 + L L G S + I EG+V V+G V T K+ AG TV F G V A Sbjct: 15 MRLQVYLAHAG-VASRRACEKIIEEGRVSVNGTVVTGMGSKVCAGDTVLFDGKPVHPEA 72 >UniRef50_Q0BE12 Pseudouridine synthase, Rsu n=7 Tax=Burkholderia RepID=Q0BE12_BURCM Length = 690 Score = 47.7 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L + G S +A I +G V VDG K+ Q + Sbjct: 438 ETGLMRLSKRMSELGLC-SRREADEWIEKGWVLVDGERIDTLGTKVRPDQKIEIDER 493 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 47.7 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + ++ G S A+ IAEG+V V+G V T+ + + G + Sbjct: 88 EPQRIAKVMARAGLC-SRRDAEAWIAEGRVSVNGTVLTQPGVSVSDEDVILVDGEKL 143 >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 47.7 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 V L + G S +A I +G V ++G T ++ G V G ++ Sbjct: 4 DSSVRLNKYISESGIC-SRREADRYIEQGNVFLNGKRATI-GDQVKPGDIVKVNGQLIE 60 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 47.3 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 L ++ G + S +A+ I EG+V V+G K+ + + G ++ Sbjct: 3 RLQKVIAHAGIA-SRRKAEELIKEGRVTVNGKTVRELGVKVSSSDRIEVNGVQLE 56 >UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobiales RepID=A6UE60_SINMW Length = 137 Score = 47.3 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 L L +S + A+ AI G V V+G ET+ +I AG + + +V Sbjct: 14 RLDKWLFFARLIKSRSLAQKAIEAGHVVVNGKRETQSSAQIKAGDMLEVSLERRDLV 70 >UniRef50_B3E104 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E104_METI4 Length = 256 Score = 46.9 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L G S + + EG++KV+G + KI A V G Sbjct: 10 PIRINRYLASCGL-GSRRSCEDLVREGRIKVNGQIVRTLGQKISAEDKVEIDGF 62 >UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1KRA9_9CHLO Length = 261 Score = 46.9 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L +L ++ S Q IA G+V V+G V T K + G VS +V Sbjct: 101 MRLDVILYRARFATSYLQLHQWIAHGKVCVNGQVVTTKGRLLSPGDVVSIHPQAV 155 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 46.5 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + L L + ++AK + G+V V+GAV + ++ G +V+ G Sbjct: 1 MRLDKYLAETAQC-TRSEAKTLLNRGRVTVNGAVCKKGDTQLREGDSVAVDG 51 >UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=Schizosaccharomyces RepID=YBB1_SCHPO Length = 327 Score = 46.5 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L + ++ S QA+ + G+V V+G E R +++ G V+ SV Sbjct: 97 RLDMSIHRALFASSALQARQLVLHGKVHVNGKPERRAYRQLLPGDLVTVDQKSV 150 >UniRef50_B2UMD6 Pseudouridine synthase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMD6_AKKM8 Length = 467 Score = 46.5 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L G +S A I EG+V+V+G V ++ V G Sbjct: 14 IRINKFLASCGI-DSRRVADRLIGEGRVEVNGKVIDTPGMRVTEKDFVKVDGR 65 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 46.5 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHSVQ 67 + L + G + A + +G+VKV+G + ++ V G VQ Sbjct: 6 TIRLNKYIASAGIASRRG-ADELVQKGKVKVNGELADSPGIQVDPDNDRVEVNGKLVQ 62 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 46.5 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L ++ G++ S +A+ I +G+V V+G V T K+ T+ G + Sbjct: 4 RLQKVIAQSGYT-SRRKAEELIQQGKVTVNGEVVTVLGTKVTKKDTICVNGKLI 56 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 46.5 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + L L + ++AK +A+G+V+V+GAV + ++ TV+ G Sbjct: 1 MRLDKYLAETAQC-TRSEAKTMLAKGRVQVNGAVCKKGDTQLKDTDTVAVDG 51 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 46.2 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L + G S +A+ I GQVKV+G + T+ K+ + V + Sbjct: 6 RLQKRIAQAG-VASRRKAEEMIVNGQVKVNGKIITKLGKKVSSDDIVYVDNKKI 58 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 46.2 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHS 65 + V L + G S +A+ I G V+V+G V ++ V+ G Sbjct: 26 EQRDGVRLQKFMASAG-VASRRKAEELITAGVVRVNGQVVRELGTRVFPERDRVTVRGEP 84 Query: 66 VQ 67 +Q Sbjct: 85 IQ 86 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 45.8 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKI-VAGQTVSFAGHSVQVVA 70 L ++ G S ++ I G+V+V+G V T K + G + A Sbjct: 4 RLQKIIARAG-VASRRASEELILAGRVRVNGRVVTELGLKADRQKDRIEVDGKRLVSEA 61 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 45.8 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSV 66 ++ V + L + G + S A + EG+V ++G + + K+V G V G Sbjct: 9 QNEAVRINRYLAMCGIA-SRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDGSKF 67 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 45.8 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + +L G + S +A+ I +G+V V+G + K++AG V G S+ Sbjct: 18 RIAKVLAHAGIA-SRREAERLIEKGRVSVNGEILRTPAFKVMAGDDVRVDGESI 70 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 45.8 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L G S A+ IAEG+V V+G V + G + G V Sbjct: 32 RISKRLSRAGLC-SRRDAERWIAEGRVSVNGRVLDTPAVTVRPGDRIVVDGQPV 84 >UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglobaceae RepID=C8S933_FERPL Length = 208 Score = 45.8 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + L + LK G+ +S +QAK AI G VKV+G V T+ ++ + + A Sbjct: 1 MRLDEFLKKSGYFKSRSQAKEAIKRGFVKVNGKVITKPSFQVKGSEKIEVAEK 53 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 45.8 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L L G + + K I +G+V V+G V + V G +V Sbjct: 1 MRLDRYLSNSG-VGTRKEVKKLIKQGRVTVNGRVVLDPGHSVSENDVVVLDGETV 54 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 45.8 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L + G+ S +A I G+V ++ + G TV G + Sbjct: 2 DQSISLNKFISDTGYC-SRREADNLITSGRVLLNDRP-AALGNRYKPGDTVEVDGSLIT 58 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 45.8 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 7 GKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L +L G S + + + G++ V+G + KI G V G + Sbjct: 86 IFAEPERLQKVLAQAG-VASRREIEELVVAGRISVNGLPAS-LGQKIGPGDRVKLNGKLI 143 Query: 67 QVV 69 + Sbjct: 144 PLR 146 >UniRef50_Q04T62 Pseudouridine synthase n=4 Tax=Leptospira RepID=Q04T62_LEPBJ Length = 244 Score = 45.4 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 + L L G S + + I GQ+ ++G T KI G VS+ G+ V+ Sbjct: 11 DEIRLNRFLADCGL-GSRRKTEELILRGQITINGKRVTDLGTKIKPGSDVVSYLGNVVE 68 >UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31 RepID=B0T1Z8_CAUSK Length = 501 Score = 45.4 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + +L G S + I +G+V ++G V T K+ G ++ G + Sbjct: 20 DGEGARVAKMLARAG-VASRRAVERLIEDGRVALNGEVLTTPAIKVRPGDILTVDGKMI 77 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 45.4 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 1 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVS 60 MAT S + + + G S A + +G+V +DG + + GQTV+ Sbjct: 1 MATESSDREGM-RINKYIAHAGVC-SRRDADDLVEQGRVHIDGERVDQHGTCVREGQTVT 58 Query: 61 FAGHSV 66 G V Sbjct: 59 VDGEEV 64 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 45.4 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 L L G S A+ I G+V V+G + T ++ V G ++ Sbjct: 7 RLQKRLARAG-VASRRAAEDLITAGRVTVNGQIAT-LGRTVMPDDEVRVDGRLIE 59 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 45.4 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + L L G S +AK ++ G+VKVDG + ++ A Q+V G V Sbjct: 1 MRLDQYLSN-GTELSRKEAKKVVSAGRVKVDGETCRQANRQVEAEQSVHLDGKPV 54 >UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosaeta thermophila PT RepID=A0B9H7_METTP Length = 238 Score = 45.4 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF-AGHSV 66 + L L + S ++A I G+V V+GAV ++ ++ G V G Sbjct: 2 MMRLDIYL--VEIAGSRSKAVHLIKSGKVMVNGAVCRKQSYRVKPGDRVEIVEGFRY 56 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 45.4 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHSVQ 67 + L L G + ++ I+ G+V V+G V T K+ V G V Sbjct: 49 PLRLQKFLARAGVASRRG-SERLISAGRVAVNGIVITELGTKVDPLVDEVCVDGAIVT 105 >UniRef50_Q7NQJ1 Pseudouridylate synthase n=1 Tax=Chromobacterium violaceum RepID=Q7NQJ1_CHRVO Length = 233 Score = 45.0 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 V L + G S +A I +G VKVDG V ++ Q ++ AG Sbjct: 2 DETSVRLSKRMVELGLC-SRREADACIEQGLVKVDGKVVNTLGARVRPEQQITLAGK 57 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 45.0 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L + G+ S +A I +G+V ++G K++ G V G V Sbjct: 8 RLNKYISETGFC-SRREADKLIEQGRVTINGKQPEM-GTKVLPGDDVCVDGKPV 59 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 45.0 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQV 68 V L ++ G S + IA G+V V+G T +I V+ +VQ+ Sbjct: 25 VRLQKVMAAAG-VASRRVCEDMIAAGRVTVNGETVTEPGRRIDPDVDEVAVDDQAVQL 81 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 45.0 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + L L G S +A+ I +G+V V+ + + V+ G V Sbjct: 4 IRLQKYLAHAG-VASRRKAEEMIKQGRVAVNNVIIENMGATVTCNDVVTVDGKPVT 58 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 44.6 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHSV 66 V L +L G S A+I I +G+V+V+ + T + ++ + G + Sbjct: 76 DSDGVRLQKVLAQAG-VASRRHAEILIDQGRVEVNDRIVTTQGVRVNPNNDVIRVDGVRI 134 Query: 67 QV 68 + Sbjct: 135 HI 136 >UniRef50_A7HKW0 Hemolysin A n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKW0_FERNB Length = 263 Score = 44.6 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIV-AGQTVSFAGHSV 66 ++ + L LL L+G+ ES +A+ I G V +DG V T+ K + + Sbjct: 2 ENKVLRLDQLLILKGFVESRTKAQQMIENGLVLLDGKVCTKPSKKCHSDSKIIILDDLKY 61 Query: 67 QVVA 70 A Sbjct: 62 VSRA 65 >UniRef50_C7XEV3 Pseudouridine synthase family 1 protein n=6 Tax=Bacteroidales RepID=C7XEV3_9PORP Length = 189 Score = 44.6 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 + L L+ G S +A I +V V+G K+ A V G + V Sbjct: 3 IRLNKLISEAGVC-SRREADNFIEMERVTVNGKQPHV-GQKVTAEDLVLVDGERLNVE 58 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 44.6 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70 L + G+ S +A I +G+V V+G K+ + V G +++ + Sbjct: 6 RLNKFISDTGFC-SRREADKYIEDGRVTVNGIRPEM-GVKVSSTDVVLVDGKTLKAIP 61 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 44.6 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L + G S +A + EG+V V+G + T K+ A V+ + + Sbjct: 280 MPLNKYIAHSGLC-SRRKAVDFVKEGKVTVNGELITEPAFKVTAKDEVAINNRKINI 335 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 44.2 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQVV 69 V L +L G + A+ I +G+V V+G V T K+ ++ ++ +V Sbjct: 4 VRLQKVLAQAGIASRRG-AEEVIRQGRVVVNGIVVTELGVKVDPHADRITVDRVTIAMV 61 >UniRef50_A9NGL0 rRNA pseudouridylate synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGL0_ACHLI Length = 238 Score = 44.2 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L ++ G S +A+ I EG+VKV+ V K+ ++ G + Sbjct: 3 RLSKVIAQAG-CASRRKAENLITEGKVKVNDEVINVLGYKVSPKDIITVEGKPL 55 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 44.2 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + L G S +A I EG++ V+G K+ + V Sbjct: 11 DEKIRINKYLSEAGIC-SRREADRMIEEGRITVNGKK-AESGQKVSLEDEICADNIPV 66 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 44.2 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 11 HVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHSVQV 68 + L L G + ++ + G+V V+G V T K+ V+ G V++ Sbjct: 10 PMRLQKFLARAGAASRRG-SENLMTAGRVTVNGKVVTELGSKVDPLVDEVAVDGAVVRL 67 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 44.2 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 L ++ G + S A+ I G+V V+G V T K ++ G V+ Sbjct: 4 RLQKIISAAGIT-SRRAAEEMILAGRVTVNGQVVTELGSKADPAKDLIALDGQPVK 58 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 44.2 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHSVQ 67 L + G S +A I EG+VKV+G KI V G V+ Sbjct: 3 RLNKYIAKSGIC-SRRKADELILEGKVKVNGKTVKNLGLKIDPKKDVVEVEGKIVK 57 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 44.2 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + + L + G S +A I G + V+G V T ++ TV + ++ Sbjct: 155 EPEKMRLNRFISNSGVC-SRREADKLIEMGMISVNGKVITEMGFQVSPTDTVKYGKRLLK 213 >UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B9JSK8_AGRVS Length = 263 Score = 43.8 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 L LL S ++A+ A+ G VKV+G T+ T+ Sbjct: 11 EPQRLDQLLVALNLFASRSRARDAVQRGGVKVNGRTVTKPSLTFSPDVTIEIDD 64 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 43.8 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 9 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 L +L G S + + + G++ V+G + KI G V G V + Sbjct: 114 SEPERLQKVLAQAG-VASRREIEEWVVAGRISVNGLPAS-LGQKIGPGDRVKVNGKLVPL 171 Query: 69 V 69 Sbjct: 172 R 172 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHSV 66 + + L + + + +QAK + G+V V+G K+ G + G Sbjct: 3 IRIDKFLSTQAIA-TRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGRVY 57 >UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q8T866_DICDI Length = 401 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + +L G + S +A+ I +G+VKV+G + + + ++ ++V Sbjct: 139 RIQKILARAGIA-SRRKAEELIIDGRVKVNGKIIKMEEILVKPHDIITVDDKPIKV 193 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG--QTVSFAGHS 65 V L LL G S +A+ I G+V+++G V + ++ G + G Sbjct: 2 DSQTVRLQKLLAAHG-VASRREAEAMIRAGRVRINGTVVREQGVRV-DGARDVIEVDGRI 59 Query: 66 VQ 67 ++ Sbjct: 60 LK 61 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQV 68 + + L G S I G+V ++G T+ I ++ G V + Sbjct: 24 IRINKALANAGVC-SRRNVDKYILNGEVTINGKSVTQPGIYIHPDKDIIALHGRRVDI 80 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + LL G S + IAEG+V ++G V T K+ G ++ G V Sbjct: 152 RIAKLLARSG-VGSRRDVERLIAEGRVAINGQVLTTPAVKVEPGDILTVDGAVV 204 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA-GQTVSFAGHSV 66 K+ + L L G + ++ K + Q+ V+G + T+ K+ +S+ G V Sbjct: 21 KNELMRLDKFLTEMGL-GTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPV 79 Query: 67 Q 67 Sbjct: 80 T 80 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L + G+ S QA IAEG V +DG T +++ GQ V+ G+ V + Sbjct: 24 ESLRLNKYISDSGYC-SRRQADRFIAEGVVAIDGVTATV-GQQVLPGQRVTVEGNHVTI 80 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 + L L G S +A+ I EG+V ++ + + V G V++ Sbjct: 1 MRLQQFLARAG-VASRRKAEDLIREGRVTINDQI-AGIGSSVSESDVVCLDGERVRL 55 >UniRef50_C7RM56 RNA-binding S4 domain protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RM56_9PROT Length = 415 Score = 43.5 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 10 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 L L+ S +A I G V VDG V TR ++ + Sbjct: 175 EPPRLSKLVSQLALC-SRREADEWIENGWVTVDGVVVTRLGARVSPKAKIEI 225 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 43.5 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 L + G++ S +A+ I +G+V+V+G V T K+ G ++ G + Sbjct: 3 RLQKAIAASGYT-SRRKAEDLIVQGKVEVNGKVVTELGTKVKQGDLITVEGKPL 55 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 43.5 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 L + G S +A I +G V ++G ++VAG V G ++ Sbjct: 8 RLNKYISESGIC-SRREADRFIEQGNVFINGKRAAI-GDQVVAGDVVKVNGRLIE 60 >UniRef50_B4U7M2 Hemolysin A n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7M2_HYDS0 Length = 246 Score = 43.5 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 L LL +G S +A+ I EG+V V+G + + + G V Sbjct: 4 RLDLLLVEKGLVSSREKAQAFIMEGRVFVNGKAVLKAGTLVQEEDGIELLGEEKFV 59 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 43.5 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 2 ATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVS 60 A + + L LL G+ S + + I EG+V+VDG + T ++ Q V Sbjct: 8 AAKAQDDSNSIRLQKLLAQAGF-GSRRKCEDMITEGRVEVDGELVTELGTRVDPHKQQVR 66 Query: 61 FAGHSVQV 68 G V+V Sbjct: 67 VDGSRVRV 74 >UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetaceae RepID=RS4_RHOBA Length = 202 Score = 43.5 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 65 L ++++ G++++ QA+ I G +V+G T+ + AG + G Sbjct: 94 RLDNVVRRVGFTKTRPQARQGITHGHFRVNGVKVTKPGYMLRAGDLIEVRGRE 146 >UniRef50_B5JX71 Pseudouridine synthase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX71_9GAMM Length = 231 Score = 43.5 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 19/42 (45%) Query: 26 SGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 + + K + G++ V+ V ++ + G V+ G V+ Sbjct: 16 TRREVKFLLKAGEITVNDEVPSKPGLHLKEGDVVAVQGRVVE 57 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 43.1 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSV 66 V L L G S +A+ I G+VKV+ T K+ V+ G V Sbjct: 12 VRLQKYLAEAG-VASRRKAEELILAGRVKVNARAVTVLGSKVDPARDLVTVDGRLV 66 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 43.1 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 V L L+ G + S +A+ I G+V ++G+V K+ V G ++ Sbjct: 3 VRLQKLIAGTGLA-SRRKAEELITSGRVTINGSVVKELGTKVDPARDHVKVDGKHLR 58 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 43.1 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + + G + S +A+ I +G+V ++G V + +G V G + Sbjct: 1 MRINKYIAHAGIA-SRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEVEGQPI 54 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 43.1 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 19/56 (33%) Query: 4 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTV 59 + L L S + K + EG V V+G + K+ G+ V Sbjct: 8 EFKVEGEEERLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERV 63 >UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9Q8_THEAS Length = 234 Score = 42.7 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 63 + L L G S + + I G+VK++G V + C++ G V G Sbjct: 1 MRLNQYLARCGL-GSRRKVEALIVTGRVKLNGLVVSDLGCRVEEGDHVEVDG 51 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 42.7 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 + L L L G S +A G+V ++GAV ++ G V V + Sbjct: 453 MRLQKALALAGL-GSRRDMDELVAAGRVSINGAV-AELGARVRPGDKVRVDSKPVLIR 508 >UniRef50_D1CG17 Hemolysin A n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG17_THET1 Length = 277 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 6/52 (11%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVET------RKRCKI 53 + L L+ G + S +A+ I+ G V V+G R+ K+ Sbjct: 6 NQDSIRLDKLMVELGLASSREKAQALISSGLVTVNGEKARSSDQRVRRGTKV 57 >UniRef50_A0K8E6 Pseudouridine synthase, Rsu n=38 Tax=Burkholderia RepID=A0K8E6_BURCH Length = 669 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 8 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 64 + + L + G S +A I +G V VDGA K+ A Q + Sbjct: 417 ETGLMRLSKRMSELGMC-SRREADEWIEKGWVLVDGARIDTLGTKVRADQKIEIDER 472 >UniRef50_B9HLH3 Predicted protein n=5 Tax=Magnoliophyta RepID=B9HLH3_POPTR Length = 397 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSV 66 L +L G S ++ I EG+V V+G+V + ++ G ++ G+ + Sbjct: 148 RLSKVLAAAG-VASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDSIYVNGNRL 201 >UniRef50_Q0VQK2 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQK2_ALCBS Length = 248 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQ 67 L L S + ++ +A G+V+V+G VE ++ +I V G +Q Sbjct: 14 RLDRFLS-ARLQMSRSNLRLLLAAGRVRVNGQVERDRQRRIGLFDAVVCDGEILQ 67 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSV 66 + + + G S +A+ I G V ++G V T + +G V G + Sbjct: 27 MRINKYIAHAG-VASRRKAEELIKRGLVTLNGQVVTDLATTVKSGDLVEIEGSPI 80 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKI-VAGQTVSFAGHSVQ 67 L +L G S QA+ + EG+V V+G+V T K + + G ++ Sbjct: 5 RLQKILSQAG-VSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRDHIKVDGRLLK 59 >UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepID=C7RHU0_ANAPD Length = 233 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 12 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 + + + G++ S +A + +G+VKV+G I V G +++ Sbjct: 1 MRINKYIASSGYT-SRRKADDLVKKGKVKVNGETTHELGLDIKDSDVVEIDGKVLEIE 57 >UniRef50_B0VGS5 Tyrosyl-tRNA synthetase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGS5_9BACT Length = 400 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRC--KIVAGQTV 59 +L +LL G + +AK I G V ++G T + G + Sbjct: 339 KLSNLLVDSGICSTNGEAKRLIQGGAVSLNGEKITAFDAVVNLKDGDII 387 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 3 TFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSF 61 + L LL G+ S + + I +G+V+VDG + T ++ Q V Sbjct: 10 KQYENDGDGIRLQKLLAQAGF-GSRRKCEEMITDGRVEVDGELVTELGTRVDPKRQQVRV 68 Query: 62 AGHSVQV 68 G +++ Sbjct: 69 DGSRIRL 75 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQVV 69 L +L G S + + I G+V VDG + T+ K+ Q ++ G +++ Sbjct: 3 RLQKVLAHAG-VASRRKCEELILAGRVSVDGEIVTQLGAKVDPSRQRIAVDGVPIELE 59 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 42.3 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQVVA 70 + L G S A IA G+V V+GAV T +I ++ G V + Sbjct: 10 RINKALASAGVC-SRRHADDLIAAGRVTVNGAVVTEAGLRIDPARDALAVDGAPVNLAP 67 >UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacteraceae RepID=A5G345_ACICJ Length = 98 Score = 42.3 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA----GHSVQV 68 L L + ++ A +A G V+++ + + ++ G ++ A V+V Sbjct: 16 RLDKFLFHARFVKTRGVAARLVAAGGVRINRQITEKPHARLRPGDVLTLALPQGVQVVRV 75 Query: 69 VA 70 VA Sbjct: 76 VA 77 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 42.3 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG-QTVSFAGHSVQ 67 L +L G +S + + I EG+V+VDG T K+ Q + G ++ Sbjct: 18 RLHKVLAFAGI-DSRRKCEALIQEGRVEVDGKFVTELGMKVDPEHQEILVDGQRLK 72 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.182 0.561 Lambda K H 0.267 0.0555 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 517,349,564 Number of Sequences: 3077464 Number of extensions: 22974947 Number of successful extensions: 56455 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 461 Number of HSP's successfully gapped in prelim test: 232 Number of HSP's that attempted gapping in prelim test: 55887 Number of HSP's gapped (non-prelim): 704 length of query: 70 length of database: 1,040,396,356 effective HSP length: 42 effective length of query: 28 effective length of database: 911,142,868 effective search space: 25512000304 effective search space used: 25512000304 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 88 (38.1 bits)