HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/d2e6312573615073/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/d2e6312573615073/query.hhm DATE Sun Jan 15 18:04:46 2012 LENG 96 match states, 96 columns in multiple alignment FILT 89 out of 91 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4098 -0.9893 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >ss_conf 977789999999999985577434899999999999999997558721899999999999999999999999999999940122246887789999 >Consensus MxxxxxlDxlaxxxxxxlxxxxxxxxxexexxxraxlxxxlxklDlVtREEFdvqxxvlxrtRxkleaLexrvaxLExxlxxxxxxxxxxxxxpxx >batch____ MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRISELENRSTEIKKQPDPETLPPTL >UniRef50_C3X5M1(1-88:90) Putative uncharacterized protein n=2 Tax=Oxalobacter formigenes RepID=C3X5M1_OXAFO E=6e-12 s/c=0.82 id=28% cov=91% -MNKKILDDLQAKLGQIMA---HSPVKDIERNIRAILTQAVAKLDVVTKEEFEVQRLTLVQMQSKILSLETRLAELEHQIRHQKDVSSKS------ >UniRef50_Q8RPB2(1-86:86) PA5289-like protein n=11 Tax=Pseudomonadaceae RepID=Q8RPB2_PSEST E=5e-15 s/c=0.95 id=34% cov=90% MLPPKaFLDAIGSQASRLFNGETPLPRGEFEAQLKGVVQGALNKLDVVSRDEFDSQMVVLARTRARLEALEAKVAELEEKLTPPAS----------- >UniRef50_B0UA59(4-101:107) Putative uncharacterized protein n=9 Tax=Rhizobiales RepID=B0UA59_METS4 E=3e-12 s/c=0.74 id=25% cov=95% ---NRLLDDFARLMTDA-AGAAQGVRREAESVVRAQVERFLRDMDVASREEVEVLRDLLTALRGQNDALAARVAVLEARAGIGAaeapsagSSADPSTKP P-- >UniRef50_A0L5V4(3-85:87) Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L5V4_MAGSM E=2e-09 s/c=0.76 id=29% cov=83% -LDNAFIDRIAQGVLGVVS-SVGETREEMVRKVREVVREGVEHFDLVTRDEFEVARKMAANARLQLDALEKRVVEMEKKLS--------------- >UniRef50_A7C381(1-94:106) Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7C381_9GAMM E=3e-18 s/c=0.99 id=33% cov=99% MNNTLNFDTFFKQVTNTLPKGLLSLHQDLEKNLRVAMESTFHKMNLVTREEFDIQTAVLQRTRTRLEALEAKMAEFEAIHLSTETMPLSKSELP-- >UniRef50_B2MU08(2-82:82) Putative uncharacterized protein n=2 Tax=Methylophilales RepID=B2MU08_METME E=4e-08 s/c=0.73 id=33% cov=85% LISNEKIQELSLKIKQLIE---SSPISELNNNLHALIQGALTKMELVSREEFDIQSALLARTQEQLKRLEEKISQLEEGQASRK------------ >UniRef50_C6XLV5(5-86:86) Putative uncharacterized protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XLV5_HIRBI E=1e-07 s/c=0.70 id=28% cov=82% -------DEAAKFVTGAMGAAQAA-GDEAKGLLRAQTDRVISEMDLVSREEYDVLKEMFLASQKRVETLEERLQTLENRLNTEIEG---------- >UniRef50_C8NBG0(9-74:77) Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBG0_9GAMM E=4e-05 s/c=0.75 id=28% cov=67% ------------QLEQKLPDSLRPVQAEVKAAARSLLDDKLAQFDWVPRSEFEAQAQLLAQAEARIAALEAKLED--------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 4650 59 * * * * * * * * * 1 0 * * * * * * 3939 0 0 I 2 5093 * * 6000 2980 * * 2267 4805 2074 3352 3470 3735 * 5517 * * 4009 * * 2 0 * * * * * * 4250 0 0 D 3 5196 * 1712 5823 * 4516 * * 6140 * * 1489 4646 4246 4982 4817 3718 * * * 3 33 * 5473 * * * * 4471 0 0 P 4 * * 5654 * * * * * 3374 5344 * 1829 1815 3169 * 6064 2580 * * * 4 0 * * * * 0 * 4564 0 1000 K 5 3934 * 4056 3998 * * * * 1518 5825 * 3874 6036 2496 2547 * 6243 * * * 5 67 4456 * 0 * * * 4578 1296 0 K 6 * * * 6267 2350 6126 4897 3282 3330 2316 3991 5967 * 4908 * * 2802 4041 5406 * 6 0 * * * * * * 4597 0 0 I 7 * * * * 1975 * * 1816 * 1467 4032 * * * * * * 4691 * * 7 19 6270 * 0 * * * 4602 1000 0 E 8 5892 * 665 2504 * * * * 5836 * * 3412 * 4701 * 5236 * * * * 8 0 * * * * * * 4645 0 0 Q 9 4690 * 1860 1822 * 5124 * * 4210 * * 4252 * 2929 4504 4860 4108 * * * 9 0 * * * * * * 4661 0 0 I 10 5461 * * * 3444 * * 1530 * 1269 3989 * * * * * * 4031 * * 10 0 * * * * * * 4661 0 0 A 11 961 * * * 6348 3401 * 5515 * * 5255 6519 * 3945 * 2726 4691 3930 * * 11 0 * * * * * * 4661 0 0 R 12 3577 * 4470 3396 * 4377 7066 * 2178 5012 * 4470 * 3011 2236 4545 4502 * * * 12 0 * * * * * * 4661 0 0 Q 13 4604 * 6570 * 5487 4866 4740 * 1872 2339 6466 5210 * 2251 4417 * 5873 4835 * 4784 13 0 * * * * * * 4692 0 0 V 14 3061 * * * 4026 * * 2206 * 2004 2747 * * * * * * 2294 * * 14 0 * * * * * * 4692 0 0 H 15 3998 * * 4394 4706 2761 4256 * 5030 5221 * 2945 * 4847 5471 2207 2392 * * * 15 0 * * * * * * 4692 0 0 E 16 5052 * 1931 2249 * 2594 * * 5928 * * 4119 * 2505 4429 5626 6082 * * * 16 0 * * * * * * 4692 0 0 S 17 1512 * 5198 * 5598 4943 * 4191 5622 2213 * 6577 * * 5261 3279 3688 5338 * 4784 17 287 * 2471 * * * * 4692 0 0 M 18 5616 * * * 2919 * * 2563 * 1368 2837 * * * * * * 2728 * * 18 294 4575 2812 527 1707 525 1713 4570 1570 2928 P 19 1608 * 5824 4485 * 5285 * * 5302 * * 5485 1540 4880 5293 3070 * 6178 * * 19 248 * 2660 * * 674 1422 4568 0 3029 K 20 3576 * 3101 4630 * 1699 * * 3270 * * * 3026 3323 3964 * 4041 * * * 20 111 * 3760 * * 1467 648 4548 0 3286 G 21 1871 * 4523 3849 * 2209 * * 6176 5729 3888 * 6267 * 5953 3079 6141 3355 * 4720 21 54 * 4772 * * 1893 453 4665 0 3071 I 22 1943 * * 5736 5869 5693 * 3827 * 1757 4612 * 6266 5320 * 5212 4532 2563 * * 22 20 6194 * 1585 585 547 1663 4714 1000 3016 R 23 4008 * 4720 * * 3242 4582 * 3092 4331 * 4298 4827 1976 3423 3487 4777 6588 * 5967 23 15 * 6588 * * 436 1939 4753 0 2135 E 24 3845 * 5157 3562 * 1588 6043 * 6023 4325 * 3640 5660 4024 * 2366 4685 6614 * * 24 32 * 5525 * * 1017 983 4775 0 1511 F 25 3971 * * * 3450 * * 3832 * 2251 4086 * 1971 * * 4727 4581 2548 * * 25 21 * 6113 * * 910 1096 4708 0 1599 G 26 3503 * 6418 5051 * 2829 5216 4904 2635 4519 * * 5441 4269 1695 * 4379 4941 * * 26 0 * * * * 0 * 4736 0 1531 E 27 3645 4827 3353 2166 * 4008 5953 * 3333 * * 3724 * 3607 2622 4419 5672 * * * 27 0 * * * * * * 4582 0 0 D 28 * * 1409 1002 * 4880 * * * * * 5308 5649 5701 * 5282 * * * * 28 29 5636 * 1084 921 * * 4582 1458 0 V 29 2304 * * * 3832 * * 2500 * 2511 3566 * 6381 * * * * 1844 * * 29 0 * * * * * * 4582 0 0 E 30 5313 * 2855 915 * 5101 5682 6020 4251 * * 6492 * 3365 5214 5601 5649 6149 * * 30 0 * * * * * * 4582 0 0 K 31 2861 * 5508 4880 * 5146 * * 2045 * 6752 4276 * 3520 3231 3077 2718 6540 * * 31 0 * * * * * * 4582 0 0 K 32 3394 * * * * * 6752 4574 3152 3453 5296 1511 * 2659 6090 6377 6561 3686 * * 32 0 * * * * * * 4582 0 0 I 33 3212 * * * 2907 * * 2357 * 2200 3585 * * * * 6020 * 2016 * * 33 0 * * * * * * 4582 0 0 R 34 * * * * * * 4659 * 2022 4827 * 4644 * 5657 692 * * * * * 34 22 6020 * 0 * * * 4582 1000 0 Q 35 1234 * 5920 4350 * 3856 6775 * 4827 6450 * 4106 * 2488 * 3521 6838 4255 * * 35 0 * * * * * * 4582 0 0 T 36 3875 * * * * 4379 * 3119 * 2236 3675 * * 2360 3620 5052 4537 2957 * * 36 0 * * * * * * 4582 0 0 L 37 3007 * * * 4906 * * 3541 * 1087 3754 * * * * * 5801 2369 * * 37 0 * * * * * * 4544 0 0 Q 38 3964 * 3155 2033 * 4868 6097 * 4934 * 5210 4646 * 1650 4713 5481 4278 * * * 38 29 * 5645 * * * * 4544 0 0 A 39 3792 * 5751 3063 6399 3445 * * 3817 * * 3336 * 3970 2256 2042 * * * * 39 0 * * * * * 0 4517 0 1000 Q 40 1917 * * * 3544 3061 * 3617 4697 5175 5653 * * 2990 * 5456 3196 3898 4750 * 40 0 * * * * * 0 4517 0 1000 L 41 4451 5645 * * 2217 * * 3923 * 919 5132 * * * * * 6026 3638 * * 41 0 * * * * * 0 4517 0 1000 T 42 2583 * 4588 4211 * 4381 6655 * 5119 * * 3294 * 5074 3563 1681 3028 * * * 42 0 * * * * 0 * 4517 0 1000 R 43 * * 2935 4391 * 4106 6125 * 1366 * * 4819 * 3827 2233 5025 6383 * * * 43 0 * * * * * * 4544 0 0 L 44 * * * * 3906 * * 4819 * 797 1949 5925 * * 5401 * * 5442 * * 44 0 * * * * * * 4544 0 0 D 45 * * 333 3636 * 5652 * * * * * 3537 * 5658 * * * * * * 45 0 * * * * * * 4544 0 0 L 46 * * * * 3253 * * 5549 * 685 4831 * * * * * * 2334 5758 * 46 0 * * * * * * 4544 0 0 V 47 4960 * * * * * * 4841 * * * * * * * * * 100 * * 47 0 * * * * * * 4544 0 0 S 48 * * * * * * * * 4780 * * 4819 3765 6669 4097 1412 1285 * * * 48 0 * * * * * * 4544 0 0 R 49 * * * * * * 4883 * 4520 5645 * * * * 148 * * * * * 49 0 * * * * * * 4544 0 0 E 50 * * 3120 356 * * * * * * * 4819 * 4708 * 5057 * * * * 50 0 * * * * * * 4544 0 0 E 51 * * 3457 193 * * * * * * * * * * 4883 * * * * * 51 0 * * * * * * 4544 0 0 F 52 * * * * 276 * * 5345 * 3913 4883 * * * * * * 5998 * 4906 52 0 * * * * * * 4544 0 0 D 53 * * 735 1454 * * * * * * * * * 4883 * * * * * * 53 0 * * * * * * 4544 0 0 V 54 1902 * * 4819 * * * 2988 * 5825 5789 * * * 5345 5145 3934 1262 * * 54 0 * * * * * * 4544 0 0 Q 55 4621 * * * 5847 * * * * 3766 5658 * * 697 * * 6097 2459 * 4819 55 0 * * * * * * 4544 0 0 T 56 3152 6688 * 4883 * * 5345 * 2869 5411 4311 * * 2605 2151 4359 2737 5624 * * 56 0 * * * * * * 4544 0 0 Q 57 1745 * 3008 2153 * 6194 4782 * 4210 5719 * * * 2638 5465 * 6657 4786 * * 57 8 * 7506 * * * * 4544 0 0 V 58 4705 * * 6224 * * * 3891 * 2515 1683 * * * * * 5715 1413 * * 58 0 * * * * * 0 4547 0 1000 L 59 1912 * * * 5755 * * 6629 * 566 * * * * * * * 5056 * * 59 0 * * * * * 0 4547 0 1000 L 60 1740 * 6224 4381 4817 * 4723 4323 4233 2344 6181 5644 * 3620 3677 5659 4885 5715 * * 60 0 * * * * * 0 4547 0 1000 R 61 3559 * * 4438 * * 7224 * 2208 4520 * 4907 * 3608 1183 5917 5922 6207 * * 61 0 * * * * * 0 4547 0 1000 T 62 1526 * * * * * * * * 3822 5715 6189 * * * 3341 1247 5845 * 6392 62 0 * * * * * 0 4547 0 1000 R 63 5563 * * 5754 * 6302 5845 * * 5297 * 5343 * 3567 329 * * * * * 63 0 * * * * * 0 4547 0 1000 E 64 2360 * 3380 1424 * 5990 * 5063 3885 4681 6604 6266 * 3692 * 5009 4258 * * * 64 17 6379 * 2807 222 0 * 4547 1000 1000 K 65 5789 * 4591 2556 * 5658 * * 1443 * * 6437 * 3268 1994 * 5924 * * * 65 0 * * * * * * 4544 0 0 L 66 * * * * * * * 3368 * 854 * 2886 * 3943 * 5653 * 2944 * * 66 0 * * * * * * 4544 0 0 A 67 2066 * 2881 1070 * 6283 5645 6773 4800 5719 6935 * * * 6191 6383 5768 * * * 67 0 * * * * * * 4544 0 0 L 68 1155 * 5157 2842 * * 6608 * 4502 3875 * * * 3454 5538 3596 3932 * * * 68 0 * * * * * * 4544 0 0 L 69 4909 * * * * * * * * 185 4652 * * 6034 * * * 4975 * * 69 0 * * * * * * 4544 0 0 E 70 3718 * 4566 603 * * * * 3406 4975 * 7039 * 3960 * 5856 6960 * * * 70 0 * * * * * * 4544 0 0 Q 71 1200 * 4787 3331 * * 5253 4353 2833 6609 5645 * * 3793 4481 5433 4524 * * * 71 0 * * * * * * 4544 0 0 R 72 5652 * * 4510 * * * * 2263 * * * * 2377 947 * 5919 * * * 72 0 * * * * * * 4544 0 0 I 73 * * * * 6413 * * 2663 * 1333 5766 * * * * 6930 * 1297 * * 73 0 * * * * * * 4544 0 0 S 74 1186 * 3456 3444 * * 4883 6942 4819 6693 * 5511 * 4338 4608 3436 4699 4413 * * 74 0 * * * * * * 4544 0 0 E 75 1769 * 3562 1604 * * 6615 * 3458 4604 * * * 4446 5488 5227 4636 5998 * * 75 0 * * * * * * 4544 0 0 L 76 * * * * 4978 * * 5451 * 266 4061 * * 5748 * * 6101 * * 5596 76 0 * * * * * * 4517 0 0 E 77 * * * 150 * * * * 4878 * * 6112 * 5608 * 5075 * * * * 77 16 * 6524 * * * * 4542 0 0 N 78 1409 * 4437 3236 * 5988 5552 * 2792 5142 * 4190 * 3496 7137 3511 5442 * * * 78 0 * * * * * 0 4530 0 1000 R 79 3005 * * 4248 * 5100 * 5957 2162 5712 * * * 2423 1612 6279 6864 * * * 79 0 * * * * * 0 4407 0 1000 S 80 2821 * * * 6266 * 5853 3205 6294 1137 * 4558 * 3538 * 4579 * 3611 * * 80 49 5899 5936 2000 415 * 0 4336 1000 1000 T 81 2792 * 3595 3830 * 3252 4157 * 5198 5347 * 2887 * 6088 4400 3015 2567 * * * 81 0 * * * * * 0 4376 0 1273 E 82 4385 * 2742 2911 5967 3474 4989 5385 4255 5575 * 3316 3901 3760 5980 3098 4872 5216 * * 82 0 * * * * * 0 4507 0 1273 I 83 4545 * * 3138 * 3224 * 5875 2618 3025 * 5225 3907 2775 4969 5416 4128 3613 * * 83 0 * * * * 937 1066 4325 0 1273 K 84 2213 * 4630 2959 * 4298 * 3967 2068 * * * 4278 4512 3738 3745 5856 * * * 84 49 4898 * 2807 222 0 * 4334 1000 1000 K 85 3031 * 2714 2958 * 5071 * * 2730 * * * * 3241 * 2668 2709 * * * 85 0 * * * * * * 4360 0 0 Q 86 2950 * 4316 5105 * 2412 * * 4792 5018 4379 * 3250 2804 4644 3116 4906 4281 * * 86 0 * * * * * * 4265 0 0 P 87 1541 * * * * 4634 4794 * * * * 5066 1917 3233 4764 2814 * * * * 87 0 * * * * * * 4172 0 0 D 88 1792 * 2052 4393 * * 4625 * * 3283 * * * * * 1841 * * * * 88 0 * * * * * * 3837 0 0 P 89 * * * * * 3932 * * 2755 * * * 822 * * 2180 * * * * 89 0 * * * * * * 3780 0 0 E 90 4104 * 3793 3100 * * * * 3775 * * 4337 3095 4122 * 1597 2993 * * * 90 0 * * * * * * 3659 0 0 T 91 2062 * * * * 3786 * * 2535 * * * 2713 * * 3479 1872 * * * 91 0 * * * * * * 3404 0 0 L 92 1511 * * 2469 * * * 3901 3370 2910 3819 * * * * 3306 * * * * 92 104 3840 * 1000 1000 * * 3304 1000 0 P 93 3186 * * * * * * * 3499 3205 * * 983 3230 * * 3630 * * * 93 0 * * * * * * 3200 0 0 P 94 * * * * * * * * * * * * 0 * * * * * * * 94 0 * * * * * * 3136 0 0 T 95 * * * * * * * * * * * * * * * * 0 * * * 95 0 * * * * * * 1000 0 0 L 96 * * * * * * * * * 0 * * * * * * * * * * 96 0 * * 0 * * * 1000 0 0 //