 |
| Job Description | Q2M5U1 | | Confidence | 2.19% | Date | Thu Jan 5 12:33:58 GMT 2012 |
| Rank | 23 | Aligned Residues | 16 |
| % Identity | 38% | Template | c1pi8A_ |
| PDB info |
PDB header:viral protein | Chain: A: PDB Molecule:vpu protein; |
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1
|
| Resolution | UNK |
|
|   |   |
31 | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | K | I | V | F | V | V | G | I | I | L | F | L | V | S | L |
| Query Conservation |   |
|
|
|
|
|   |
|   |
|
|
|   |   |
|   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Sequence |   |
A | I | V | A | L | V | V | A | I | I | I | A | I | V | V | W |
| Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|