Phyre 2 Results for P76520

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Email | l.a.kelley@imperial.ac.uk
Description | P76520
Date | Thu Jan 5 12:24:00 GMT 2012
Unique Job ID | d254323774fce9c3

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3dzaB_
Top template information
PDB header:unknown function Chain: B: PDB Molecule:uncharacterized putative membrane protein; PDBTitle: crystal structure of a putative membrane protein of unknown function2 (yfdx) from klebsiella pneumoniae subsp. at 1.65 a resolution
Confidence and coverage
Confidence: | 100.0% | Coverage: | 85%
179 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | R | L | I | M | A | T | M | V | T | A | I | L | A | S | S | T | V | W | A | A | D | N | A | P | V | A | A | Q | Q | Q | T | Q | Q | V | Q | Q | T | Q | K | T | A | A | A | A | E | R | I | S | E | Q | G | L | Y | A | M | R | D | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Q | V | A | R | L | A | L | F | H | G | D | P | E | K | A | K | E | L | T | N | E | A | S | A | L | L | S | D | D | S | T | E | W | A | K | F | A | K | P | G | K | K | T | N | L | N | D | D | Q | Y | I | V | I | N | A | S | V | G | I | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | S | Y | V | A | T | P | E | K | E | A | A | I | K | I | A | N | E | K | M | A | K | G | D | K | K | G | A | M | E | E | L | R | L | A | G | V | G | V | M | E | N | Q | Y | L | M | P | L | K | Q | T | R | N | A | L | A | D | A | Q | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | .
Sequence |  | L | L | D | K | K | Q | Y | Y | E | A | N | L | A | L | K | G | A | E | D | G | I | I | V | D | S | E | A | L | F | V | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3dzaB_ |

### PDB 3dza chain B

Region: 27 - 208
Aligned: 179
Modelled: 180
Confidence: 100.0%
Identity: 59%
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized putative membrane protein;
PDBTitle: crystal structure of a putative membrane protein of unknown function2 (yfdx) from klebsiella pneumoniae subsp. at 1.65 a resolution

Phyre2
2 |
| c2kc7A_ |

### PDB 2kc7 chain A

Region: 133 - 199
Aligned: 60
Modelled: 67
Confidence: 73.7%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bfr218_protein;
PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218

Phyre2
3 |
| d2gy9t1 |

### PDB 2gy9 chain T domain 1

Region: 60 - 91
Aligned: 32
Modelled: 32
Confidence: 63.3%
Identity: 19%
Fold: Spectrin repeat-like
Superfamily: Ribosomal protein S20
Family: Ribosomal protein S20

Phyre2
4 |
| d2uubt1 |

### PDB 2uub chain T domain 1

Region: 60 - 91
Aligned: 32
Modelled: 32
Confidence: 60.2%
Identity: 19%
Fold: Spectrin repeat-like
Superfamily: Ribosomal protein S20
Family: Ribosomal protein S20

Phyre2
5 |
| c3ly8A_ |

### PDB 3ly8 chain A

Region: 56 - 199
Aligned: 130
Modelled: 144
Confidence: 57.2%
Identity: 17%
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional activator cadc;
PDBTitle: crystal structure of mutant d471e of the periplasmic domain of cadc

Phyre2
6 |
| d1qsaa1 |

### PDB 1qsa chain A domain 1

Region: 61 - 198
Aligned: 117
Modelled: 127
Confidence: 56.9%
Identity: 14%
Fold: alpha-alpha superhelix
Superfamily: Bacterial muramidases
Family: Bacterial muramidases

Phyre2
7 |
| c3k1sE_ |

### PDB 3k1s chain E

Region: 172 - 202
Aligned: 31
Modelled: 31
Confidence: 42.5%
Identity: 23%
PDB header:transferase
Chain: E: PDB Molecule:pts system, cellobiose-specific iia component;
PDBTitle: crystal structure of the pts cellobiose specific enzyme iia2 from bacillus anthracis

Phyre2
8 |
| c1wao4_ |

### PDB 1wao chain 4

Region: 124 - 199
Aligned: 68
Modelled: 76
Confidence: 41.3%
Identity: 16%
PDB header:hydrolase
Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5;
PDBTitle: pp5 structure

Phyre2
9 |
| c1wcrA_ |

### PDB 1wcr chain A

Region: 172 - 202
Aligned: 31
Modelled: 31
Confidence: 40.9%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:pts system, n, n'-diacetylchitobiose-specific
PDBTitle: trimeric structure of the enzyme iia from escherichia coli2 phosphotransferase system specific for n,n'-3 diacetylchitobiose

Phyre2
10 |
| d2crba1 |

### PDB 2crb chain A domain 1

Region: 164 - 202
Aligned: 39
Modelled: 39
Confidence: 40.9%
Identity: 23%
Fold: Spectrin repeat-like
Superfamily: MIT domain-like
Family: MIT domain

Phyre2
11 |
| c3l8rA_ |

### PDB 3l8r chain A

Region: 172 - 202
Aligned: 31
Modelled: 31
Confidence: 40.7%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:putative pts system, cellobiose-specific iia
PDBTitle: the crystal structure of ptca from s. mutans

Phyre2
12 |
| d2e2aa_ |

### PDB 2e2a chain A

Region: 172 - 202
Aligned: 31
Modelled: 31
Confidence: 37.7%
Identity: 23%
Fold: Spectrin repeat-like
Superfamily: Enzyme IIa from lactose specific PTS, IIa-lac
Family: Enzyme IIa from lactose specific PTS, IIa-lac

Phyre2
13 |
| d2ijqa1 |

### PDB 2ijq chain A domain 1

Region: 169 - 194
Aligned: 26
Modelled: 26
Confidence: 36.2%
Identity: 15%
Fold: Hyaluronidase domain-like
Superfamily: TTHA0068-like
Family: TTHA0068-like

Phyre2
14 |
| d1hxia_ |

### PDB 1hxi chain A

Region: 60 - 198
Aligned: 92
Modelled: 99
Confidence: 33.7%
Identity: 15%
Fold: alpha-alpha superhelix
Superfamily: TPR-like
Family: Tetratricopeptide repeat (TPR)

Phyre2
15 |
| d1hz4a_ |

### PDB 1hz4 chain A

Region: 49 - 199
Aligned: 132
Modelled: 132
Confidence: 32.8%
Identity: 18%
Fold: alpha-alpha superhelix
Superfamily: TPR-like
Family: Transcription factor MalT domain III

Phyre2
16 |
| c2l6jA_ |

### PDB 2l6j chain A

Region: 127 - 199
Aligned: 65
Modelled: 73
Confidence: 32.1%
Identity: 12%
PDB header:protein binding
Chain: A: PDB Molecule:tpr repeat-containing protein associated with hsp90;
PDBTitle: tah1 complexed by meevd

Phyre2
17 |
| c3k1iA_ |

### PDB 3k1i chain A

Region: 56 - 87
Aligned: 32
Modelled: 32
Confidence: 29.3%
Identity: 19%
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal strcture of flis-hp1076 complex in h. pylori

Phyre2
18 |
| d256ba_ |

### PDB 256b chain A

Region: 130 - 200
Aligned: 71
Modelled: 71
Confidence: 24.8%
Identity: 20%
Fold: Four-helical up-and-down bundle
Superfamily: Cytochromes
Family: Cytochrome b562

Phyre2
19 |
| c2c2lD_ |

### PDB 2c2l chain D

Region: 126 - 199
Aligned: 66
Modelled: 74
Confidence: 24.5%
Identity: 17%
PDB header:chaperone
Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein;
PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase

Phyre2
20 |
| c1vh6A_ |

### PDB 1vh6 chain A

Region: 56 - 87
Aligned: 32
Modelled: 32
Confidence: 22.5%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flagellar protein flis;
PDBTitle: crystal structure of a flagellar protein

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3dzaB_ |
|  | 100.0 | 59 | PDB header:unknown function Chain: B: PDB Molecule:uncharacterized putative membrane protein; PDBTitle: crystal structure of a putative membrane protein of unknown function2 (yfdx) from klebsiella pneumoniae subsp. at 1.65 a resolution
2 | c2kc7A_ |
|  | 73.7 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bfr218_protein; PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218
3 | d2gy9t1 |
|  | 63.3 | 19 | Fold:Spectrin repeat-like Superfamily:Ribosomal protein S20 Family:Ribosomal protein S20
4 | d2uubt1 |
|  | 60.2 | 19 | Fold:Spectrin repeat-like Superfamily:Ribosomal protein S20 Family:Ribosomal protein S20
5 | c3ly8A_ |
|  | 57.2 | 17 | PDB header:signaling protein Chain: A: PDB Molecule:transcriptional activator cadc; PDBTitle: crystal structure of mutant d471e of the periplasmic domain of cadc
6 | d1qsaa1 |
|  | 56.9 | 14 | Fold:alpha-alpha superhelix Superfamily:Bacterial muramidases Family:Bacterial muramidases
7 | c3k1sE_ |
|  | 42.5 | 23 | PDB header:transferase Chain: E: PDB Molecule:pts system, cellobiose-specific iia component; PDBTitle: crystal structure of the pts cellobiose specific enzyme iia2 from bacillus anthracis
8 | c1wao4_ |
|  | 41.3 | 16 | PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure
9 | c1wcrA_ |
|  | 40.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:pts system, n, n'-diacetylchitobiose-specific PDBTitle: trimeric structure of the enzyme iia from escherichia coli2 phosphotransferase system specific for n,n'-3 diacetylchitobiose
10 | d2crba1 |
|  | 40.9 | 23 | Fold:Spectrin repeat-like Superfamily:MIT domain-like Family:MIT domain
11 | c3l8rA_ |
|  | 40.7 | 26 | PDB header:transferase Chain: A: PDB Molecule:putative pts system, cellobiose-specific iia PDBTitle: the crystal structure of ptca from s. mutans
12 | d2e2aa_ |
|  | 37.7 | 23 | Fold:Spectrin repeat-like Superfamily:Enzyme IIa from lactose specific PTS, IIa-lac Family:Enzyme IIa from lactose specific PTS, IIa-lac
13 | d2ijqa1 |
|  | 36.2 | 15 | Fold:Hyaluronidase domain-like Superfamily:TTHA0068-like Family:TTHA0068-like
14 | d1hxia_ |
|  | 33.7 | 15 | Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR)
15 | d1hz4a_ |
|  | 32.8 | 18 | Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Transcription factor MalT domain III
16 | c2l6jA_ |
|  | 32.1 | 12 | PDB header:protein binding Chain: A: PDB Molecule:tpr repeat-containing protein associated with hsp90; PDBTitle: tah1 complexed by meevd
17 | c3k1iA_ |
|  | 29.3 | 19 | PDB header:chaperone Chain: A: PDB Molecule:flagellar protein; PDBTitle: crystal strcture of flis-hp1076 complex in h. pylori
18 | d256ba_ |
|  | 24.8 | 20 | Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome b562
19 | c2c2lD_ |
|  | 24.5 | 17 | PDB header:chaperone Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein; PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase
20 | c1vh6A_ |
|  | 22.5 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flis; PDBTitle: crystal structure of a flagellar protein
21 | d1vh6a_ |
| not modelled | 22.5 | 19 | Fold:Four-helical up-and-down bundle Superfamily:Flagellar export chaperone FliS Family:Flagellar export chaperone FliS
22 | d1elra_ |
| not modelled | 21.4 | 17 | Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR)
23 | c2r5sB_ |
| not modelled | 15.9 | 20 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633
24 | c3n71A_ |
| not modelled | 14.6 | 11 | PDB header:transcription Chain: A: PDB Molecule:histone lysine methyltransferase smyd1; PDBTitle: crystal structure of cardiac specific histone methyltransferase smyd1
25 | d2ccqa1 |
| not modelled | 14.1 | 24 | Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain
26 | c3q49B_ |
| not modelled | 13.9 | 14 | PDB header:ligase/chaperone Chain: B: PDB Molecule:stip1 homology and u box-containing protein 1; PDBTitle: crystal structure of the tpr domain of chip complexed with hsp70-c2 peptide
27 | c2ksnA_ |
| not modelled | 13.7 | 19 | PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin domain-containing protein 2; PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2
28 | c2y4tA_ |
| not modelled | 13.4 | 14 | PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of the human co-chaperone p58(ipk)
29 | d1hh8a_ |
| not modelled | 11.9 | 15 | Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR)
30 | c2x0kB_ |
| not modelled | 11.9 | 18 | PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes
31 | c2noxP_ |
| not modelled | 11.5 | 12 | PDB header:oxidoreductase Chain: P: PDB Molecule:tryptophan 2,3-dioxygenase; PDBTitle: crystal structure of tryptophan 2,3-dioxygenase from ralstonia2 metallidurans
32 | c1ihgA_ |
| not modelled | 11.4 | 14 | PDB header:isomerase Chain: A: PDB Molecule:cyclophilin 40; PDBTitle: bovine cyclophilin 40, monoclinic form
33 | c2p58C_ |
| not modelled | 11.2 | 21 | PDB header:transport protein/chaperone Chain: C: PDB Molecule:putative type iii secretion protein yscg; PDBTitle: structure of the yersinia pestis type iii secretion system2 needle protein yscf in complex with its chaperones3 ysce/yscg
34 | c3iegB_ |
| not modelled | 9.0 | 14 | PDB header:chaperone Chain: B: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of p58(ipk) tpr domain at 2.5 a
35 | d2fmra_ |
| not modelled | 9.0 | 13 | Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I)
36 | d2nw8a1 |
| not modelled | 8.5 | 10 | Fold:Indolic compounds 2,3-dioxygenase-like Superfamily:Indolic compounds 2,3-dioxygenase-like Family:Bacterial tryptophan 2,3-dioxygenase
37 | c3bbnT_ |
| not modelled | 8.3 | 16 | PDB header:ribosome Chain: T: PDB Molecule:ribosomal protein s20; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
38 | c3pe3D_ |
| not modelled | 8.0 | 15 | PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
39 | c3mv3B_ |
| not modelled | 7.9 | 14 | PDB header:protein transport Chain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop
40 | d1orjb_ |
| not modelled | 7.6 | 8 | Fold:Four-helical up-and-down bundle Superfamily:Flagellar export chaperone FliS Family:Flagellar export chaperone FliS
41 | c3qdnA_ |
| not modelled | 7.5 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium
42 | c2dzlA_ |
| not modelled | 6.5 | 18 | PDB header:structural genomics unknown function Chain: A: PDB Molecule:protein fam100b; PDBTitle: solution structure of the uba domain in human protein2 fam100b
43 | d2d5ua1 |
| not modelled | 6.3 | 25 | Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain
44 | c2xcbA_ |
| not modelled | 6.0 | 15 | PDB header:protein binding Chain: A: PDB Molecule:regulatory protein pcrh; PDBTitle: crystal structure of pcrh in complex with the chaperone2 binding region of popd
45 | d1r0ka3 |
| not modelled | 5.9 | 0 | Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like
46 | c2nw7C_ |
| not modelled | 5.7 | 10 | PDB header:oxidoreductase Chain: C: PDB Molecule:tryptophan 2,3-dioxygenase; PDBTitle: crystal structure of tryptophan 2,3-dioxygenase (tdo) from2 xanthomonas campestris in complex with ferric heme.3 northeast structural genomics target xcr13
47 | d1orja_ |
| not modelled | 5.6 | 8 | Fold:Four-helical up-and-down bundle Superfamily:Flagellar export chaperone FliS Family:Flagellar export chaperone FliS
48 | d1q0qa3 |
| not modelled | 5.4 | 13 | Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like
49 | c3gp2B_ |
| not modelled | 5.3 | 24 | PDB header:metal binding protein/transferase Chain: B: PDB Molecule:calcium/calmodulin-dependent protein kinase type PDBTitle: calmodulin bound to peptide from calmodulin kinase ii2 (camkii)
50 | d1wfda_ |
| not modelled | 5.1 | 21 | Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0