Phyre 2 alignment of P77399 with c2v1dA_

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Job Description | P77399
Confidence | 96.13% | Date | Thu Jan 5 12:28:38 GMT 2012
Rank | 397 | Aligned Residues | 58
% Identity | 16% | Template | c2v1dA_
PDB info | PDB header:oxidoreductase/repressor | Chain: A: PDB Molecule:lysine-specific histone demethylase 1; | PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
Resolution | 3.10 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 284 | . | . | . | . | . | 290 | . | . | . | . | . | . | . |  |  |  |  | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | L | R | S | I | F | F | A | S | T | D | V | K | K | . | . | . | . | D | P | G | S | D | A | P | P | A | P | L | N | S | V | G | I | L | G | G | G | L | M | G | G | G | I | A | Y | V | T | A | C | K | A | G | I | P | V | R | I | K | D | I | N | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | H | R | V | H | S | Y | L | E | R | H | G | L | I | N | F | G | I | Y | K | R | I | K | P | L | P | T | K | K | T | G | K | V | I | I | I | G | S | G | V | S | G | L | A | A | A | R | Q | L | Q | . | S | F | G | M | D | V | T | L | L | E | A | R | D
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | T | S | S | S |  | S | S |  | B |  | S | S |  |  |  | S | S |  |  | S |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  | . |  | T | T |  |  |  |  |  |  |  | S | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . |  | . | 300 | . | . | . | . | . | . | . | . | . | 310 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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