Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	L	S	Q	L	S	P	Q	P	L	W	D	I	F	A	K	I	C	S	I	P	H	P	S	Y	H	E	E	Q	L	A	E	Y	I	V	G	W	A	K	E	K	G	F	H	V	E	R	D	Q	V	G	N	I	L	I	R	K	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	A	G	M	E	N	R	K	P	V	V	L	Q	A	H	L	D	M	V	P	Q	K	N	N	D	T	V	H	D	F	T	K	D	P	I	Q	P	Y	I	D	G	E	W	V	K	A	R	G	T	T	L	G	A	D	N	G	I	G	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	S	A	L	A	V	L	A	D	E	N	V	V	H	G	P	L	E	V	L	L	T	M	T	E	E	A	G	M	D	G	A	F	G	L	Q	G	N	W	L	Q	A	D	I	L	I	N	T	D	S	E	E	E	G	E	I	Y	M	G	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	G	G	I	D	F	T	S	N	L	H	L	D	R	E	A	V	P	A	G	F	E	T	F	K	L	T	L	K	G	L	K	G	G	H	S	G	G	E	I	H	V	G	L	G	N	A	N	K	L	L	V	R	F	L	A	G	H	A	E
Secondary structure
SS confidence
Disorder																																			?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	L	D	L	R	L	I	D	F	N	G	G	T	L	R	N	A	I	P	R	E	A	F	A	T	I	A	V	A	A	D	K	V	D	V	L	K	S	L	V	N	T	Y	Q	E	I	L	K	N	E	L	A	E	K	E	K	N	L	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	L	D	S	V	A	N	D	K	A	A	L	I	A	K	S	R	D	T	F	I	R	L	L	N	A	T	P	N	G	V	I	R	N	S	D	V	A	K	G	V	V	E	T	S	L	N	V	G	V	V	T	M	T	D	N	N	V	E	I
Secondary structure
SS confidence
Disorder								?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		H	C	L	I	R	S	L	I	D	S	G	K	D	Y	V	V	S	M	L	D	S	L	G	K	L	A	G	A	K	T	E	A	K	G	A	Y	P	G	W	Q	P	D	A	N	S	P	V	M	H	L	V	R	E	T	Y	Q	R	L	F	N
Secondary structure
SS confidence
Disorder						?																															?		?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		K	T	P	N	I	Q	I	I	H	A	G	L	E	C	G	L	F	K	K	P	Y	P	E	M	D	M	V	S	I	G	P	T	I	T	G	P	H	S	P	D	E	Q	V	H	I	E	S	V	G	H	Y	W	T	L	L	T	E	L	L	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.
Sequence		E	I	P	A	K
Secondary structure
SS confidence
Disorder			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mru chain B Region: 2 - 485 Aligned: 484 Modelled: 484 Confidence: 100.0% Identity: 64% PDB header:hydrolase Chain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus Phyre2 PDB 2qyv chain B Region: 7 - 485 Aligned: 467 Modelled: 467 Confidence: 100.0% Identity: 55% PDB header:hydrolase Chain: B: PDB Molecule:xaa-his dipeptidase; PDBTitle: crystal structure of putative xaa-his dipeptidase (yp_718209.1) from2 haemophilus somnus 129pt at 2.11 a resolution Phyre2 PDB 2zog chain A Region: 1 - 483 Aligned: 434 Modelled: 449 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:cytosolic non-specific dipeptidase; PDBTitle: crystal structure of mouse carnosinase cn2 complexed with zn and2 bestatin Phyre2 PDB 2pok chain B Region: 10 - 482 Aligned: 425 Modelled: 447 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of a m20 family metallo peptidase from streptococcus2 pneumoniae Phyre2 PDB 3pfe chain A Region: 4 - 485 Aligned: 429 Modelled: 425 Confidence: 100.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a m20a metallo peptidase (dape, lpg0809) from2 legionella pneumophila subsp. pneumophila str. philadelphia 1 at 1.503 a resolution Phyre2 PDB 3pfo chain B Region: 10 - 482 Aligned: 366 Modelled: 376 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:putative acetylornithine deacetylase; PDBTitle: crystal structure of a putative acetylornithine deacetylase (rpa2325)2 from rhodopseudomonas palustris cga009 at 1.90 a resolution Phyre2 PDB 3dlj chain B Region: 6 - 483 Aligned: 426 Modelled: 444 Confidence: 100.0% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:beta-ala-his dipeptidase; PDBTitle: crystal structure of human carnosine dipeptidase 1 Phyre2 PDB 1lfw chain A Region: 1 - 483 Aligned: 391 Modelled: 404 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:pepv; PDBTitle: crystal structure of pepv Phyre2 PDB 1vgy chain B Region: 10 - 482 Aligned: 370 Modelled: 385 Confidence: 100.0% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase Phyre2 PDB 3khz chain A Region: 6 - 483 Aligned: 387 Modelled: 395 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form Phyre2 PDB 3gb0 chain A Region: 7 - 483 Aligned: 352 Modelled: 369 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of aminopeptidase pept (np_980509.1) from bacillus2 cereus atcc 10987 at 2.04 a resolution Phyre2 PDB 3rza chain A Region: 7 - 485 Aligned: 353 Modelled: 357 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:tripeptidase; PDBTitle: crystal structure of a tripeptidase (sav1512) from staphylococcus2 aureus subsp. aureus mu50 at 2.10 a resolution Phyre2 PDB 3ic1 chain A Region: 8 - 483 Aligned: 367 Modelled: 380 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase2 from haemophilus influenzae Phyre2 PDB 3ife chain A Region: 5 - 483 Aligned: 362 Modelled: 367 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: 1.55 angstrom resolution crystal structure of peptidase t (pept-1)2 from bacillus anthracis str. 'ames ancestor'. Phyre2 PDB 1vix chain A Region: 7 - 485 Aligned: 362 Modelled: 368 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of a putative peptidase t Phyre2 PDB 1cg2 chain D Region: 8 - 484 Aligned: 357 Modelled: 373 Confidence: 100.0% Identity: 17% PDB header:metallocarboxypeptidase Chain: D: PDB Molecule:carboxypeptidase g2; PDBTitle: carboxypeptidase g2 Phyre2 PDB 2rb7 chain A Region: 9 - 482 Aligned: 341 Modelled: 364 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of co-catalytic metallopeptidase (yp_387682.1) from2 desulfovibrio desulfuricans g20 at 1.60 a resolution Phyre2 PDB 2f7v chain A Region: 1 - 479 Aligned: 347 Modelled: 373 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:aectylcitrulline deacetylase; PDBTitle: structure of acetylcitrulline deacetylase complexed with2 one co Phyre2 PDB 3ct9 chain B Region: 9 - 482 Aligned: 337 Modelled: 365 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:acetylornithine deacetylase; PDBTitle: crystal structure of a putative zinc peptidase (np_812461.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution Phyre2 PDB 3n5f chain B Region: 8 - 483 Aligned: 356 Modelled: 360 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:n-carbamoyl-l-amino acid hydrolase; PDBTitle: crystal structure of l-n-carbamoylase from geobacillus2 stearothermophilus cect43 Phyre2 1 c3mruB_ 2 c2qyvB_ 3 c2zogA_ 4 c2pokB_ 5 c3pfeA_ 6 c3pfoB_ 7 c3dljB_ 8 c1lfwA_ 9 c1vgyB_ 10 c3khzA_ 11 c3gb0A_ 12 c3rzaA_ 13 c3ic1A_ 14 c3ifeA_ 15 c1vixA_ 16 c1cg2D_ 17 c2rb7A_ 18 c2f7vA_ 19 c3ct9B_ 20 c3n5fB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mruB_ 100.0 64 PDB header:hydrolase Chain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus 2 c2qyvB_ 100.0 55 PDB header:hydrolase Chain: B: PDB Molecule:xaa-his dipeptidase; PDBTitle: crystal structure of putative xaa-his dipeptidase (yp_718209.1) from2 haemophilus somnus 129pt at 2.11 a resolution 3 c2zogA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:cytosolic non-specific dipeptidase; PDBTitle: crystal structure of mouse carnosinase cn2 complexed with zn and2 bestatin 4 c2pokB_ 100.0 16 PDB header:hydrolase Chain: B: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of a m20 family metallo peptidase from streptococcus2 pneumoniae 5 c3pfeA_ 100.0 13 PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a m20a metallo peptidase (dape, lpg0809) from2 legionella pneumophila subsp. pneumophila str. philadelphia 1 at 1.503 a resolution 6 c3pfoB_ 100.0 16 PDB header:hydrolase Chain: B: PDB Molecule:putative acetylornithine deacetylase; PDBTitle: crystal structure of a putative acetylornithine deacetylase (rpa2325)2 from rhodopseudomonas palustris cga009 at 1.90 a resolution 7 c3dljB_ 100.0 15 PDB header:hydrolase Chain: B: PDB Molecule:beta-ala-his dipeptidase; PDBTitle: crystal structure of human carnosine dipeptidase 1 8 c1lfwA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:pepv; PDBTitle: crystal structure of pepv 9 c1vgyB_ 100.0 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase 10 c3khzA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form 11 c3gb0A_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of aminopeptidase pept (np_980509.1) from bacillus2 cereus atcc 10987 at 2.04 a resolution 12 c3rzaA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:tripeptidase; PDBTitle: crystal structure of a tripeptidase (sav1512) from staphylococcus2 aureus subsp. aureus mu50 at 2.10 a resolution 13 c3ic1A_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase2 from haemophilus influenzae 14 c3ifeA_ 100.0 24 PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: 1.55 angstrom resolution crystal structure of peptidase t (pept-1)2 from bacillus anthracis str. 'ames ancestor'. 15 c1vixA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of a putative peptidase t 16 c1cg2D_ 100.0 17 PDB header:metallocarboxypeptidase Chain: D: PDB Molecule:carboxypeptidase g2; PDBTitle: carboxypeptidase g2 17 c2rb7A_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of co-catalytic metallopeptidase (yp_387682.1) from2 desulfovibrio desulfuricans g20 at 1.60 a resolution 18 c2f7vA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:aectylcitrulline deacetylase; PDBTitle: structure of acetylcitrulline deacetylase complexed with2 one co 19 c3ct9B_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:acetylornithine deacetylase; PDBTitle: crystal structure of a putative zinc peptidase (np_812461.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution 20 c3n5fB_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:n-carbamoyl-l-amino acid hydrolase; PDBTitle: crystal structure of l-n-carbamoylase from geobacillus2 stearothermophilus cect43 21 c2imoA_ not modelled 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:allantoate amidohydrolase; PDBTitle: crystal structure of allantoate amidohydrolase from escherichia coli2 at ph 4.6 22 c1ysjB_ not modelled 100.0 15 PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family 23 c2v8gD_ not modelled 100.0 16 PDB header:hydrolase Chain: D: PDB Molecule:beta-alanine synthase; PDBTitle: crystal structure of beta-alanine synthase from2 saccharomyces kluyveri in complex with the product beta-3 alanine 24 c3tx8A_ not modelled 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a succinyl-diaminopimelate desuccinylase (arge)2 from corynebacterium glutamicum atcc 13032 at 2.97 a resolution 25 c2q43A_ not modelled 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:iaa-amino acid hydrolase ilr1-like 2; PDBTitle: ensemble refinement of the protein crystal structure of iaa-aminoacid2 hydrolase from arabidopsis thaliana gene at5g56660 26 c3ramC_ not modelled 100.0 18 PDB header:hydrolase Chain: C: PDB Molecule:hmra protein; PDBTitle: crystal structure of hmra 27 d1lfwa1 not modelled 100.0 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 28 c1vheA_ not modelled 100.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:aminopeptidase/glucanase homolog; PDBTitle: crystal structure of a aminopeptidase/glucanase homolog 29 d1vixa1 not modelled 100.0 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 30 c3kl9F_ not modelled 100.0 14 PDB header:hydrolase Chain: F: PDB Molecule:glutamyl aminopeptidase; PDBTitle: crystal structure of pepa from streptococcus pneumoniae 31 c2pe3A_ not modelled 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:354aa long hypothetical operon protein frv; PDBTitle: crystal structure of frv operon protein frvx (ph1821)from pyrococcus2 horikoshii ot3 32 c1yloA_ not modelled 100.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sf2450; PDBTitle: crystal structure of protein of unknown function (possible2 aminopeptidase) s2589 from shigella flexneri 2a str. 2457t 33 c1y0yA_ not modelled 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:frv operon protein frvx; PDBTitle: crystal structure of tetrahedral aminopeptidase from p. horikoshii in2 complex with amastatin 34 c3isxA_ not modelled 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase (tm1050) from thermotoga2 maritima at 1.40 a resolution 35 d1fnoa4 not modelled 100.0 16 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 36 c3io1B_ not modelled 100.0 14 PDB header:hydrolase Chain: B: PDB Molecule:aminobenzoyl-glutamate utilization protein; PDBTitle: crystal structure of aminobenzoyl-glutamate utilization2 protein from klebsiella pneumoniae 37 c1vhoA_ not modelled 100.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endoglucanase; PDBTitle: crystal structure of a putative peptidase/endoglucanase 38 c3t6mA_ not modelled 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of the catalytic domain of dape protein from2 v.cholerea in the zn bound form 39 c2cf4A_ not modelled 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:protein ph0519; PDBTitle: pyrococcus horikoshii tet1 peptidase can assemble into a2 tetrahedron or a large octahedral shell 40 d1z2la1 not modelled 100.0 16 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 41 d1cg2a1 not modelled 100.0 26 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 42 c2fvgA_ not modelled 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase (tm1049) from thermotoga maritima2 at 2.01 a resolution 43 d1vhea2 not modelled 100.0 16 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 44 d1yloa2 not modelled 100.0 24 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 45 d1xfoa2 not modelled 100.0 22 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 46 d1vhoa2 not modelled 100.0 19 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 47 c3cpxC_ not modelled 100.0 15 PDB header:hydrolase Chain: C: PDB Molecule:aminopeptidase, m42 family; PDBTitle: crystal structure of putative m42 glutamyl aminopeptidase2 (yp_676701.1) from cytophaga hutchinsonii atcc 33406 at 2.39 a3 resolution 48 d1r3na1 not modelled 100.0 18 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 49 c1q7lA_ not modelled 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:aminoacylase-1; PDBTitle: zn-binding domain of the t347g mutant of human aminoacylase-2 i 50 c2greC_ not modelled 99.9 25 PDB header:hydrolase Chain: C: PDB Molecule:deblocking aminopeptidase; PDBTitle: crystal structure of deblocking aminopeptidase from bacillus cereus 51 d2fvga2 not modelled 99.9 22 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 52 d1vgya1 not modelled 99.9 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 53 d1xmba1 not modelled 99.9 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 54 d2grea2 not modelled 99.8 13 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 55 d1ysja1 not modelled 99.8 14 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 56 d1rtqa_ not modelled 99.6 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 57 d1tkja1 not modelled 99.6 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 58 c3tc8A_ not modelled 99.5 18 PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase; PDBTitle: crystal structure of a hypothetical zn-dependent exopeptidase2 (bdi_3547) from parabacteroides distasonis atcc 8503 at 1.06 a3 resolution 59 c3guxA_ not modelled 99.5 17 PDB header:hydrolase Chain: A: PDB Molecule:putative zn-dependent exopeptidase; PDBTitle: crystal structure of a putative zn-dependent exopeptidase (bvu_1317)2 from bacteroides vulgatus atcc 8482 at 1.80 a resolution 60 c3pb6X_ not modelled 99.4 21 PDB header:transferase Chain: X: PDB Molecule:glutaminyl-peptide cyclotransferase-like protein; PDBTitle: crystal structure of the catalytic domain of human golgi-resident2 glutaminyl cyclase at ph 6.5 61 c1q7lB_ not modelled 99.4 17 PDB header:hydrolase Chain: B: PDB Molecule:aminoacylase-1; PDBTitle: zn-binding domain of the t347g mutant of human aminoacylase-2 i 62 d2afwa1 not modelled 99.4 21 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Glutaminyl-peptide cyclotransferase-like 63 d1y0ya2 not modelled 99.4 19 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 64 c2glfB_ not modelled 99.3 26 PDB header:hydrolase Chain: B: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: crystal structure of aminipeptidase (m18 family) from thermotoga2 maritima 65 c2ek8A_ not modelled 99.3 24 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase; PDBTitle: aminopeptidase from aneurinibacillus sp. strain am-1 66 d3bi1a3 not modelled 99.2 22 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:FolH catalytic domain-like 67 c3l6sA_ not modelled 99.2 21 PDB header:hydrolase Chain: A: PDB Molecule:aspartyl aminopeptidase; PDBTitle: crystal structure of human aspartyl aminopeptidase (dnpep),2 in complex with aspartic acid hydroxamate 68 c2ijzF_ not modelled 99.1 20 PDB header:hydrolase Chain: F: PDB Molecule:probable m18-family aminopeptidase 2; PDBTitle: crystal structure of aminopeptidase 69 c1y7eA_ not modelled 99.1 18 PDB header:hydrolase Chain: A: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: the crystal structure of aminopeptidase i from borrelia burgdorferi2 b31 70 d1y7ea2 not modelled 98.8 20 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 71 c3iibA_ not modelled 98.8 15 PDB header:hydrolase Chain: A: PDB Molecule:peptidase m28; PDBTitle: crystal structure of peptidase m28 precursor (yp_926796.1) from2 shewanella amazonensis sb2b at 1.70 a resolution 72 d1de4c3 not modelled 98.8 17 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:FolH catalytic domain-like 73 d1vgya2 not modelled 98.5 17 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 74 d1cg2a2 not modelled 98.4 17 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 75 c2ootA_ not modelled 98.3 21 PDB header:hydrolase Chain: A: PDB Molecule:glutamate carboxypeptidase 2; PDBTitle: a high resolution structure of ligand-free human glutamate2 carboxypeptidase ii 76 d1z2la2 not modelled 98.3 15 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 77 c2gljR_ not modelled 98.3 24 PDB header:hydrolase Chain: R: PDB Molecule: PDBTitle: crystal structure of aminopeptidase i from clostridium2 acetobutylicum 78 c3rbuA_ not modelled 98.2 17 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:glutamate carboxypeptidase 2; PDBTitle: n-terminally avitev-tagged human glutamate carboxypeptidase ii in2 complex with 2-pmpa 79 d1r3na2 not modelled 98.2 18 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 80 c1cx8F_ not modelled 98.2 17 PDB header:metal transport Chain: F: PDB Molecule:transferrin receptor protein; PDBTitle: crytal structure of the ectodomain of human transferrin receptor 81 d1lfwa2 not modelled 98.1 11 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 82 d1ysja2 not modelled 97.9 15 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 83 d1xmba2 not modelled 95.4 9 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 84 d1fnoa3 not modelled 94.8 14 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 85 c3k9tA_ not modelled 92.3 14 PDB header:hydrolase Chain: A: PDB Molecule:putative peptidase; PDBTitle: crystal structure of putative peptidase (np_348812.1) from clostridium2 acetobutylicum at 2.37 a resolution 86 d1gqoa_ not modelled 69.9 6 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 87 d1uqra_ not modelled 66.4 9 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 88 c3kr5E_ not modelled 64.0 13 PDB header:hydrolase Chain: E: PDB Molecule:m17 leucyl aminopeptidase; PDBTitle: structure of a protease 4 89 c3kzwD_ not modelled 62.0 15 PDB header:hydrolase Chain: D: PDB Molecule:cytosol aminopeptidase; PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col 90 c3n8kG_ not modelled 61.7 10 PDB header:lyase Chain: G: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid 91 c3lwzC_ not modelled 60.2 7 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 92 c2uygF_ not modelled 57.6 9 PDB header:lyase Chain: F: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystallogaphic structure of the typeii 3-dehydroquinase2 from thermus thermophilus 93 d1h05a_ not modelled 54.2 11 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 94 c3peiA_ not modelled 47.5 16 PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: crystal structure of cytosol aminopeptidase from francisella2 tularensis 95 c3h8gC_ not modelled 47.2 23 PDB header:hydrolase Chain: C: PDB Molecule:cytosol aminopeptidase; PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida 96 d2c4va1 not modelled 45.7 11 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 97 d1gtza_ not modelled 39.6 9 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 98 c2hc9A_ not modelled 34.8 10 PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase 1; PDBTitle: structure of caenorhabditis elegans leucine aminopeptidase-zinc2 complex (lap1) 99 d1lama1 not modelled 33.7 11 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Leucine aminopeptidase, C-terminal domain 100 d1wj9a2 not modelled 33.3 13 Fold:Ferredoxin-like Superfamily:CRISPR-associated protein Family:CRISPR-associated protein 101 d1gyta2 not modelled 31.1 15 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Leucine aminopeptidase, C-terminal domain 102 d1bvyf_ not modelled 30.6 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 103 c1bvyF_ not modelled 30.6 16 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 104 c3jruB_ not modelled 29.4 16 PDB header:hydrolase Chain: B: PDB Molecule:probable cytosol aminopeptidase; PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331 105 d2fz5a1 not modelled 24.7 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 106 c3fniA_ not modelled 23.5 19 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 107 c3hlyA_ not modelled 22.8 19 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 108 c3ij3A_ not modelled 22.7 17 PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii 109 c2hnbA_ not modelled 22.4 27 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 110 c3f6sI_ not modelled 21.8 15 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 111 d1vmea1 not modelled 21.3 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0