16/01/2012 22:58:57 : INFO  : Run start: Mon Jan 16 22:58:55 GMT 2012
16/01/2012 22:59:05 : INFO  : Initialised job
16/01/2012 22:59:07 : INFO  : Renaming log file 'phyre2_20120116_225854.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d201b362b6e1a8cc/phyre_20120116_225854.log'
16/01/2012 22:59:10 : INFO  : Initialised job:
Sequence
>batch____
MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVT
LTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQ
HPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFCRPGHP
AIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLVAKSDF
LSKLPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQRRDSRQTPLTASLITQFRRECGYL
QS

16/01/2012 22:59:11 : INFO  : Checked sequence
16/01/2012 22:59:16 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 22:59:18 : INFO  : PSI-BLAST 3 iterations
16/01/2012 23:02:24 : INFO  : PSI-BLAST 5 iterations
16/01/2012 23:07:29 : INFO  : Finished PSI-BLAST
16/01/2012 23:07:32 : INFO  : Running Buildali to generate a3m file
17/01/2012 04:32:42 : INFO  : Converting to HMM
17/01/2012 04:33:04 : INFO  : Calibrating HMM
17/01/2012 04:33:25 : INFO  : Searching HMM database
17/01/2012 04:39:57 : INFO  : Finished buildali
17/01/2012 04:40:01 : INFO  : Predicting secondary structure
17/01/2012 04:40:16 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 04:40:19 : INFO  : Predicting Disordered regions
17/01/2012 04:40:27 : INFO  : Predicted Disorder (Disopred)
17/01/2012 04:40:30 : INFO  : Running memsat_svm check
17/01/2012 04:43:51 : INFO  : Running memsat_svm full
17/01/2012 04:54:12 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd201b362b6e1a8cc'
17/01/2012 04:54:17 : INFO  : Initialising fold library search
17/01/2012 04:54:24 : INFO  : Initialised search input
17/01/2012 04:54:29 : INFO  : Building Ensemble models
17/01/2012 04:54:36 : INFO  : Building hh.c3fzjC_.model.1.pdb
17/01/2012 04:55:10 : INFO  : Building c3fzjC_.1.pdb
17/01/2012 04:55:40 : INFO  : Building c3hhgF_.2.pdb
17/01/2012 04:56:11 : INFO  : Building c2esnC_.3.pdb
17/01/2012 04:56:37 : INFO  : Building c1iz1B_.4.pdb
17/01/2012 04:57:05 : INFO  : Building c3t1bB_.5.pdb
17/01/2012 04:57:32 : INFO  : Building c3fzvC_.6.pdb
17/01/2012 04:58:02 : INFO  : Building c3ispA_.7.pdb
17/01/2012 04:58:35 : INFO  : Building c1b9nA_.8.pdb
17/01/2012 04:59:05 : INFO  : Building c3m1eA_.9.pdb
17/01/2012 04:59:35 : INFO  : Building d2esna1.10.pdb
17/01/2012 05:00:05 : INFO  : Building d1b9ma1.11.pdb
17/01/2012 05:00:35 : INFO  : Building c3oxnD_.12.pdb
17/01/2012 05:01:02 : INFO  : Building c2hxrA_.13.pdb
17/01/2012 05:01:31 : INFO  : Building d1ixca1.14.pdb
17/01/2012 05:02:01 : INFO  : Building d1utha_.15.pdb
17/01/2012 05:02:32 : INFO  : Building c3n6uA_.16.pdb
17/01/2012 05:03:04 : INFO  : Building d2fyia1.17.pdb
17/01/2012 05:03:36 : INFO  : Building d1i6aa_.18.pdb
17/01/2012 05:04:09 : INFO  : Building c2uyeA_.19.pdb
17/01/2012 05:04:42 : INFO  : Building c1al3A_.20.pdb
17/01/2012 05:05:48 : INFO  : Finished HH model building
17/01/2012 05:05:54 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 05:07:00 : INFO  : html domain output complete ID 'd201b362b6e1a8cc'
17/01/2012 05:47:26 : INFO  : Run end  : Tue Jan 17 05:47:23 GMT 2012
