Phyre 2 alignment of P77744 with d1ylfa1

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Job Description | P77744
Confidence | 21.35% | Date | Thu Jan 5 12:32:25 GMT 2012
Rank | 415 | Aligned Residues | 44
% Identity | 9% | Template | d1ylfa1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | Transcriptional regulator Rrf2
Resolution | 2.50

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | M | A | F | Q | V | K | I | H | Q | I | R | A | F | V | E | V | A | R | Q | G | . | . | . | . | S | I | R | G | A | S | R | M | L | N | M | S | Q | P | A | L | S | K | S | I | Q | E | L | E | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | I | S | S | R | F | S | I | . | A | V | H | I | L | S | I | L | K | N | N | P | S | S | L | C | T | S | D | Y | X | A | E | S | V | N | T | N | P | V | V | I | R | K | I | X | S | Y | L | K | Q
Template Known Secondary structure |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | S |  | G | G | G |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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