BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (120 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobact... 247 8e-65 UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteo... 172 3e-42 UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacter... 154 7e-37 UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4... 142 3e-33 UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammapr... 124 1e-27 UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio ... 116 2e-25 UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio ... 99 4e-20 UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacter... 87 1e-16 UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcaniv... 70 2e-11 UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobi... 54 2e-06 UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodops... 50 2e-05 UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoni... 48 9e-05 UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopi... 48 1e-04 UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodoba... 40 0.017 >UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobacteria RepID=YIBI_ECOLI Length = 120 Score = 247 bits (630), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 120/120 (100%), Positives = 120/120 (100%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI 120 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI Sbjct: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI 120 >UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteobacteria RepID=YIAW_ECO57 Length = 107 Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 85/113 (75%), Positives = 91/113 (80%), Gaps = 8/113 (7%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTD 113 FLWIWATLY+PERGWGMQSH D + L RI+ LE QLA K + Sbjct: 61 FLWIWATLYRPERGWGMQSH--------DSSVMQLQQRIAGLEKQLADIKSSS 105 >UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacteria RepID=C4SKQ0_YERFR Length = 107 Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 77/107 (71%), Positives = 85/107 (79%), Gaps = 4/107 (3%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFLNYFALGVLI V L+IFYGII +HDIPYLIAK RNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIVVALIIFYGIIILHDIPYLIAKARNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVAS----QEKATDPEIAALSDRISRLE 103 FLWIWATLY+ ERGWGMQ+ AS Q++ T+ E + I LE Sbjct: 61 FLWIWATLYREERGWGMQNQEASFVQLQQRVTELEQKQSTTTIPPLE 107 >UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4_VIBCJ Length = 129 Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/115 (61%), Positives = 82/115 (71%), Gaps = 1/115 (0%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFL+YFALG+LIFV LVIFYGII IHDIPY IAK+R HPH DAIH AGWVSLFTLH +WP Sbjct: 1 MFLDYFALGLLIFVALVIFYGIIVIHDIPYEIAKEREHPHQDAIHYAGWVSLFTLHALWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYS 115 FLWIWATL++ ERGWG Q A Q + L D + +L +L K + S Sbjct: 61 FLWIWATLWRKERGWGFQKLEAEQHD-IHHRVDVLIDEVKQLRTELETLKTSSLS 114 >UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q47ZP1_COLP3 Length = 115 Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/112 (54%), Positives = 74/112 (66%), Gaps = 3/112 (2%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+YFAL ++ FV LV+FYGII +HDIPY IA R HPH DAIH AGW+SLFTL IWPFL Sbjct: 2 LDYFALFLVFFVILVLFYGIIVVHDIPYEIAVHRQHPHQDAIHVAGWISLFTLGAIWPFL 61 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDP---EIAALSDRISRLEHQLAAEKK 111 WIWATLY+P GWGM H + + T +I L ++ L + E K Sbjct: 62 WIWATLYKPGIGWGMVHHTSDSDIKTSKLELDILELQKQVELLANSQIKETK 113 >UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XEU0_VIBHA Length = 107 Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 56/107 (52%), Positives = 75/107 (70%), Gaps = 4/107 (3%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+Y +L +L V L++ +G+IA+HDIPY IAKKRNHPHADAIH AGWVSLF LHVIWPFL Sbjct: 5 LDYASLAILFVVLLILIFGLIALHDIPYEIAKKRNHPHADAIHVAGWVSLFFLHVIWPFL 64 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAE 109 WIWAT+Y E+ ++ + ++ + + L RI++LE E Sbjct: 65 WIWATMYDGEK----KNWLGAKPSISQQDYEQLLARINQLEQAKGEE 107 >UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVQ9_9VIBR Length = 106 Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 4/104 (3%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+Y +L + V L++ YG+I +HDIPY IAKKRNHPHADAIH AGW+SLF LHV+WP L Sbjct: 5 LDYASLAIFFVVLLILIYGLIILHDIPYEIAKKRNHPHADAIHVAGWISLFFLHVMWPVL 64 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQL 106 W+WAT+Y ++ Q + ++ +D + AL +RI LE + Sbjct: 65 WVWATMYDGDK----QQWLGARSAHSDKQYQALVERIDALEKSI 104 >UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacteria RepID=D2AAG4_SHIF2 Length = 46 Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/45 (93%), Positives = 44/45 (97%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIH 45 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 >UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3N9_9GAMM Length = 73 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 8/67 (11%) Query: 52 LFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIAAL-------SDRISRLEH 104 +FTLHV+WPFLWIWATLY+PERGWG Q V +Q++ + I AL S+R++ LE Sbjct: 1 MFTLHVLWPFLWIWATLYRPERGWGFQ-QVQAQQRTDETLITALQEKLDAQSERLTLLEQ 59 Query: 105 QLAAEKK 111 LA +K+ Sbjct: 60 ALAEKKE 66 >UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=A7IKV1_XANP2 Length = 83 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 2 FLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPF 61 F++ FA+ VL+ V + + P IA++R+HP A+A+ AGWV+L V+WP Sbjct: 3 FIDIFAIIVLVVVIASAVALFVILGMTPGAIARRRSHPWAEAVSVAGWVTLLCGFVLWPI 62 Query: 62 LWIWATLYQPER 73 IWA + P R Sbjct: 63 ALIWAYVDVPAR 74 >UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q137J2_RHOPS Length = 120 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 2 FLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPF 61 FL++ L +L + + I + + +P IA R HP A AI+ GW+ L TL V+WP Sbjct: 11 FLHWLTLAILCVLPVAIGAVLYKLGGLPGSIAAARGHPQAAAINICGWMGLVTL-VLWPV 69 Query: 62 LWIWATLYQ-PERG 74 +WA L + P RG Sbjct: 70 AMVWAHLDRAPTRG 83 >UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX63_9BACT Length = 143 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%) Query: 3 LNYFALGVL-IFVFLVIFYGIIA---IHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVI 58 L+ A G+ + + + GI+A +H +P IA+KR HP A AI +SL ++ Sbjct: 25 LDSLANGIAWVAIIIAPLIGIVAFWLVHILPEKIAEKRKHPQAGAIQCLCLLSLAFGGLL 84 Query: 59 WPFLWIWA----TLYQPERGWGM---QSHVASQEKATDPEIAALSDRISRLEHQLAAEK 110 WP W+WA Y+ G + H S+EK E L RI+ LE ++ K Sbjct: 85 WPIAWLWAYSKPVFYRMAYGTDVAEPHGHAPSEEKPAS-ESEQLRTRIAELEAEIKKGK 142 >UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7ULG4_RHOBA Length = 137 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 6/65 (9%) Query: 7 ALGVLIFVFLVIFY-----GIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPF 61 AL ++ VFL++F I+ + +P IA++R+HP ADA++ AGW+ L T ++W Sbjct: 34 ALRIVSLVFLLVFAVLILACIVGLAALPGKIARRRHHPFADAVNVAGWLGLPT-GIVWVL 92 Query: 62 LWIWA 66 +WA Sbjct: 93 AMVWA 97 >UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=B9NT40_9RHOB Length = 120 Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%) Query: 25 IHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQ 84 I +P IA KRNHPHA+A+ GW+ + V W +IWA Sbjct: 33 IMGLPGRIAIKRNHPHAEAVKMMGWMGFLAI-VPWVHAFIWAF---------HDGVTVDV 82 Query: 85 EKATDPEIAALSDRISRLEHQLAAEKKTDYST 116 + + E A+ D I RL + E + T Sbjct: 83 RRGPEDERKAIRDEIKRLGGTVKPEYQDPLDT 114 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobact... 167 1e-40 UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteo... 142 3e-33 UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4... 139 2e-32 UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacter... 132 3e-30 UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammapr... 125 3e-28 UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio ... 125 4e-28 UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio ... 112 5e-24 UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoni... 93 2e-18 UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodops... 87 1e-16 UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobi... 84 1e-15 UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopi... 80 2e-14 UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacter... 74 2e-12 UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcaniv... 65 7e-10 Sequences not found previously or not previously below threshold: UniRef50_C0YIP7 Putative uncharacterized protein n=1 Tax=Chryseo... 60 1e-08 UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=C... 54 1e-06 UniRef50_C7RSB7 Putative uncharacterized protein n=1 Tax=Candida... 50 1e-05 UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodoba... 49 4e-05 UniRef50_B9QYG9 Putative uncharacterized protein n=1 Tax=Labrenz... 47 1e-04 UniRef50_Q162X5 Putative uncharacterized protein n=6 Tax=Rhodoba... 41 0.011 UniRef50_Q47WJ6 Putative uncharacterized protein n=1 Tax=Colwell... 40 0.019 UniRef50_Q89PJ8 Blr3482 protein n=2 Tax=Bradyrhizobiaceae RepID=... 39 0.038 >UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobacteria RepID=YIBI_ECOLI Length = 120 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 120/120 (100%), Positives = 120/120 (100%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI 120 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI Sbjct: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI 120 >UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteobacteria RepID=YIAW_ECO57 Length = 107 Score = 142 bits (358), Expect = 3e-33, Method: Composition-based stats. Identities = 85/113 (75%), Positives = 91/113 (80%), Gaps = 8/113 (7%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTD 113 FLWIWATLY+PERGWGMQSH D + L RI+ LE QLA K + Sbjct: 61 FLWIWATLYRPERGWGMQSH--------DSSVMQLQQRIAGLEKQLADIKSSS 105 >UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4_VIBCJ Length = 129 Score = 139 bits (351), Expect = 2e-32, Method: Composition-based stats. Identities = 71/115 (61%), Positives = 82/115 (71%), Gaps = 1/115 (0%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFL+YFALG+LIFV LVIFYGII IHDIPY IAK+R HPH DAIH AGWVSLFTLH +WP Sbjct: 1 MFLDYFALGLLIFVALVIFYGIIVIHDIPYEIAKEREHPHQDAIHYAGWVSLFTLHALWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYS 115 FLWIWATL++ ERGWG Q A Q + L D + +L +L K + S Sbjct: 61 FLWIWATLWRKERGWGFQKLEAEQHDI-HHRVDVLIDEVKQLRTELETLKTSSLS 114 >UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacteria RepID=C4SKQ0_YERFR Length = 107 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 77/107 (71%), Positives = 85/107 (79%), Gaps = 4/107 (3%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFLNYFALGVLI V L+IFYGII +HDIPYLIAK RNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIVVALIIFYGIIILHDIPYLIAKARNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVAS----QEKATDPEIAALSDRISRLE 103 FLWIWATLY+ ERGWGMQ+ AS Q++ T+ E + I LE Sbjct: 61 FLWIWATLYREERGWGMQNQEASFVQLQQRVTELEQKQSTTTIPPLE 107 >UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q47ZP1_COLP3 Length = 115 Score = 125 bits (315), Expect = 3e-28, Method: Composition-based stats. Identities = 61/112 (54%), Positives = 74/112 (66%), Gaps = 3/112 (2%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+YFAL ++ FV LV+FYGII +HDIPY IA R HPH DAIH AGW+SLFTL IWPFL Sbjct: 2 LDYFALFLVFFVILVLFYGIIVVHDIPYEIAVHRQHPHQDAIHVAGWISLFTLGAIWPFL 61 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDP---EIAALSDRISRLEHQLAAEKK 111 WIWATLY+P GWGM H + + T +I L ++ L + E K Sbjct: 62 WIWATLYKPGIGWGMVHHTSDSDIKTSKLELDILELQKQVELLANSQIKETK 113 >UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XEU0_VIBHA Length = 107 Score = 125 bits (314), Expect = 4e-28, Method: Composition-based stats. Identities = 56/107 (52%), Positives = 75/107 (70%), Gaps = 4/107 (3%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+Y +L +L V L++ +G+IA+HDIPY IAKKRNHPHADAIH AGWVSLF LHVIWPFL Sbjct: 5 LDYASLAILFVVLLILIFGLIALHDIPYEIAKKRNHPHADAIHVAGWVSLFFLHVIWPFL 64 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAE 109 WIWAT+Y E+ ++ + ++ + + L RI++LE E Sbjct: 65 WIWATMYDGEK----KNWLGAKPSISQQDYEQLLARINQLEQAKGEE 107 >UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVQ9_9VIBR Length = 106 Score = 112 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 4/106 (3%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+Y +L + V L++ YG+I +HDIPY IAKKRNHPHADAIH AGW+SLF LHV+WP L Sbjct: 5 LDYASLAIFFVVLLILIYGLIILHDIPYEIAKKRNHPHADAIHVAGWISLFFLHVMWPVL 64 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAA 108 W+WAT+Y ++ Q + ++ +D + AL +RI LE + Sbjct: 65 WVWATMYDGDK----QQWLGARSAHSDKQYQALVERIDALEKSIKE 106 >UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX63_9BACT Length = 143 Score = 93.2 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%) Query: 3 LNYFALGVL-IFVFLVIFYGIIA---IHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVI 58 L+ A G+ + + + GI+A +H +P IA+KR HP A AI +SL ++ Sbjct: 25 LDSLANGIAWVAIIIAPLIGIVAFWLVHILPEKIAEKRKHPQAGAIQCLCLLSLAFGGLL 84 Query: 59 WPFLWIWAT----LYQPERGWGM---QSHVASQEKATDPEIAALSDRISRLEHQLAAEK 110 WP W+WA Y+ G + H S+EK E L RI+ LE ++ K Sbjct: 85 WPIAWLWAYSKPVFYRMAYGTDVAEPHGHAPSEEKPAS-ESEQLRTRIAELEAEIKKGK 142 >UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q137J2_RHOPS Length = 120 Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%) Query: 2 FLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPF 61 FL++ L +L + + I + + +P IA R HP A AI+ GW+ L TL V+WP Sbjct: 11 FLHWLTLAILCVLPVAIGAVLYKLGGLPGSIAAARGHPQAAAINICGWMGLVTL-VLWPV 69 Query: 62 LWIWATLYQ-PERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKT 112 +WA L + P RG S + ++ ++ +S R++ +E +L Sbjct: 70 AMVWAHLDRAPTRG----SPSSDSSRSVVGKLQQVSQRLAAIEAELTRTTTA 117 >UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=A7IKV1_XANP2 Length = 83 Score = 84.0 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 2 FLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPF 61 F++ FA+ VL+ V + + P IA++R+HP A+A+ AGWV+L V+WP Sbjct: 3 FIDIFAIIVLVVVIASAVALFVILGMTPGAIARRRSHPWAEAVSVAGWVTLLCGFVLWPI 62 Query: 62 LWIWATLYQPER 73 IWA + P R Sbjct: 63 ALIWAYVDVPAR 74 >UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7ULG4_RHOBA Length = 137 Score = 80.1 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L +L L+ ++I I+ + +P IA++R+HP ADA++ AGW+ L T ++W Sbjct: 35 LRIVSLVFLLVFAVLILACIVGLAALPGKIARRRHHPFADAVNVAGWLGLPT-GIVWVLA 93 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQL 106 +WA + G + Q ++ L + LE Sbjct: 94 MVWAHM-----GPRGNNVSTDQTNRLATQVRQLETLVDSLEQTQ 132 >UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacteria RepID=D2AAG4_SHIF2 Length = 46 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 42/45 (93%), Positives = 44/45 (97%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIH 45 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 >UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3N9_9GAMM Length = 73 Score = 65.1 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 8/67 (11%) Query: 52 LFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIAALS-------DRISRLEH 104 +FTLHV+WPFLWIWATLY+PERGWG Q V +Q++ + I AL +R++ LE Sbjct: 1 MFTLHVLWPFLWIWATLYRPERGWGFQ-QVQAQQRTDETLITALQEKLDAQSERLTLLEQ 59 Query: 105 QLAAEKK 111 LA +K+ Sbjct: 60 ALAEKKE 66 >UniRef50_C0YIP7 Putative uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YIP7_9FLAO Length = 95 Score = 60.5 bits (145), Expect = 1e-08, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Query: 10 VLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLY 69 +L+ + + Y +H P +A+K+ HP +AI + +SL ++WP IWA Sbjct: 13 ILLVLPIAGIYLFWKVHIYPEKVAEKKKHPQLNAIKSMCLLSLVFGGLLWPVALIWANYD 72 Query: 70 QPERGWGMQSHVASQEKATDPEIAAL 95 +G Q+ + T+ E L Sbjct: 73 -----YGNQNTSEKDTEITEEEFKTL 93 >UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=Cupriavidus RepID=Q0K0R7_RALEH Length = 136 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 10 VLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWAT-- 67 V+IFV L Y +H P +A ++ HP +AIH +SLF ++WP W+WA Sbjct: 26 VMIFVPLAAIYLFWMLHIWPDKVAHRKQHPQREAIHALCLLSLFFGGLLWPMAWLWAHTK 85 Query: 68 --LYQPERGWG 76 Y+ G Sbjct: 86 PVFYRAAYGTD 96 >UniRef50_C7RSB7 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RSB7_9PROT Length = 141 Score = 50.5 bits (119), Expect = 1e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 2/110 (1%) Query: 4 NYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLW 63 +Y L + + + + +P IA R HP A+A+ G+ L W Sbjct: 13 DYLTFLTLAMCVVALIMSWLFLAGLPGRIAIARKHPEAEAVKYLGYAGLLPTVYPWMQAL 72 Query: 64 IWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTD 113 IWA ++P ++ + TD EIA L S + + Sbjct: 73 IWA--FKPTDIVDIRRFPREEAIETDREIARLRGLPSTMHAAVVESSAAS 120 >UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=B9NT40_9RHOB Length = 120 Score = 48.9 bits (115), Expect = 4e-05, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%) Query: 25 IHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQ 84 I +P IA KRNHPHA+A+ GW+ + V W +IWA Sbjct: 33 IMGLPGRIAIKRNHPHAEAVKMMGWMGFLAI-VPWVHAFIWAFHD---------GVTVDV 82 Query: 85 EKATDPEIAALSDRISRLEHQLAAEKKTDYST 116 + + E A+ D I RL + E + T Sbjct: 83 RRGPEDERKAIRDEIKRLGGTVKPEYQDPLDT 114 >UniRef50_B9QYG9 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QYG9_9RHOB Length = 80 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 21 GIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLY--QPERGWGMQ 78 G + + P IAK+R H A+A+ G+ TL ++ P +IWA +P R G + Sbjct: 18 GWLFLAVWPGKIAKRRGHRRAEAVTMCGYWGALTLGLLMPIAFIWAYTDGEEPSRNSGAE 77 Query: 79 S 79 Sbjct: 78 G 78 >UniRef50_Q162X5 Putative uncharacterized protein n=6 Tax=Rhodobacteraceae RepID=Q162X5_ROSDO Length = 142 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 2 FLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFT-LHVIWP 60 +L F + + + ++I +H IP +A K NHP + ++LFT + W Sbjct: 33 YLFTFMVFFTVAIVILIGVAYFTLHAIPEKLAHKSNHPQFQLVGILSLLALFTHNGLFWV 92 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPE 91 + A P+ +++ + ++ + Sbjct: 93 AAILVAGFQFPDFSSPLRAIADAIDRNGSHD 123 >UniRef50_Q47WJ6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WJ6_COLP3 Length = 125 Score = 40.5 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Query: 10 VLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFT-LHVIWPFLWIWATL 68 +LI + L+ +H +P IA +NH I ++LFT ++ W + A + Sbjct: 25 ILIVLVLIAGVFYFKLHAVPEHIAHGKNHTQIQLITILTILALFTHNNIFWVAALVLAVV 84 Query: 69 YQPERGWGMQSHVASQEKATDPEIAALSDRIS 100 P+ +QS S + + Sbjct: 85 ELPDFLTPLQSIAKSLTTIAQSKEQKTQKKTE 116 >UniRef50_Q89PJ8 Blr3482 protein n=2 Tax=Bradyrhizobiaceae RepID=Q89PJ8_BRAJA Length = 161 Score = 39.3 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 11 LIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFT-LHVIWPFLWIWATLY 69 LI L + +H +P +A K + + G +SLFT +H+ W + A + Sbjct: 44 LIGTVLWVGTLYWKLHSLPERMAHKSQKLQFEFVAVLGLISLFTHMHIFWVAGLLLALID 103 Query: 70 QPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAE 109 P+ G ++S S E+ D + D ++ + A Sbjct: 104 LPDFGTPLRSIAGSVERIADATPSEAGDVVAESQSDAGAG 143 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobact... 150 2e-35 UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteo... 127 9e-29 UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4... 125 6e-28 UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacter... 119 3e-26 UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammapr... 113 1e-24 UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio ... 113 2e-24 UniRef50_C7RSB7 Putative uncharacterized protein n=1 Tax=Candida... 102 5e-21 UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio ... 101 6e-21 UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopi... 96 3e-19 UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoni... 91 9e-18 UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodops... 90 2e-17 UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodoba... 89 5e-17 UniRef50_C0YIP7 Putative uncharacterized protein n=1 Tax=Chryseo... 87 2e-16 UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobi... 81 2e-14 UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=C... 70 2e-11 UniRef50_B9QYG9 Putative uncharacterized protein n=1 Tax=Labrenz... 70 2e-11 UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacter... 69 5e-11 UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcaniv... 55 9e-07 Sequences not found previously or not previously below threshold: UniRef50_C9QAC2 Permease n=5 Tax=Vibrio RepID=C9QAC2_9VIBR 45 6e-04 UniRef50_Q89PJ8 Blr3482 protein n=2 Tax=Bradyrhizobiaceae RepID=... 45 7e-04 UniRef50_A3XTI9 Permease of the major facilitator superfamily pr... 45 8e-04 UniRef50_Q162X5 Putative uncharacterized protein n=6 Tax=Rhodoba... 43 0.002 UniRef50_Q47WJ6 Putative uncharacterized protein n=1 Tax=Colwell... 42 0.005 UniRef50_Q88MJ5 Immunity protein, putative n=1 Tax=Pseudomonas p... 41 0.010 UniRef50_A7JYU4 Permease n=9 Tax=Gammaproteobacteria RepID=A7JYU... 40 0.016 UniRef50_A8LP45 Putative uncharacterized protein n=1 Tax=Dinoros... 40 0.018 >UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobacteria RepID=YIBI_ECOLI Length = 120 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 120/120 (100%), Positives = 120/120 (100%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI 120 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI Sbjct: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI 120 >UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteobacteria RepID=YIAW_ECO57 Length = 107 Score = 127 bits (320), Expect = 9e-29, Method: Composition-based stats. Identities = 85/113 (75%), Positives = 91/113 (80%), Gaps = 8/113 (7%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTD 113 FLWIWATLY+PERGWGMQSH D + L RI+ LE QLA K + Sbjct: 61 FLWIWATLYRPERGWGMQSH--------DSSVMQLQQRIAGLEKQLADIKSSS 105 >UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4_VIBCJ Length = 129 Score = 125 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 71/115 (61%), Positives = 82/115 (71%), Gaps = 1/115 (0%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFL+YFALG+LIFV LVIFYGII IHDIPY IAK+R HPH DAIH AGWVSLFTLH +WP Sbjct: 1 MFLDYFALGLLIFVALVIFYGIIVIHDIPYEIAKEREHPHQDAIHYAGWVSLFTLHALWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYS 115 FLWIWATL++ ERGWG Q A Q + L D + +L +L K + S Sbjct: 61 FLWIWATLWRKERGWGFQKLEAEQHDI-HHRVDVLIDEVKQLRTELETLKTSSLS 114 >UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacteria RepID=C4SKQ0_YERFR Length = 107 Score = 119 bits (297), Expect = 3e-26, Method: Composition-based stats. Identities = 77/107 (71%), Positives = 85/107 (79%), Gaps = 4/107 (3%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 MFLNYFALGVLI V L+IFYGII +HDIPYLIAK RNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIVVALIIFYGIIILHDIPYLIAKARNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYQPERGWGMQSHVAS----QEKATDPEIAALSDRISRLE 103 FLWIWATLY+ ERGWGMQ+ AS Q++ T+ E + I LE Sbjct: 61 FLWIWATLYREERGWGMQNQEASFVQLQQRVTELEQKQSTTTIPPLE 107 >UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q47ZP1_COLP3 Length = 115 Score = 113 bits (283), Expect = 1e-24, Method: Composition-based stats. Identities = 61/112 (54%), Positives = 74/112 (66%), Gaps = 3/112 (2%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+YFAL ++ FV LV+FYGII +HDIPY IA R HPH DAIH AGW+SLFTL IWPFL Sbjct: 2 LDYFALFLVFFVILVLFYGIIVVHDIPYEIAVHRQHPHQDAIHVAGWISLFTLGAIWPFL 61 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDP---EIAALSDRISRLEHQLAAEKK 111 WIWATLY+P GWGM H + + T +I L ++ L + E K Sbjct: 62 WIWATLYKPGIGWGMVHHTSDSDIKTSKLELDILELQKQVELLANSQIKETK 113 >UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XEU0_VIBHA Length = 107 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 56/107 (52%), Positives = 75/107 (70%), Gaps = 4/107 (3%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+Y +L +L V L++ +G+IA+HDIPY IAKKRNHPHADAIH AGWVSLF LHVIWPFL Sbjct: 5 LDYASLAILFVVLLILIFGLIALHDIPYEIAKKRNHPHADAIHVAGWVSLFFLHVIWPFL 64 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAE 109 WIWAT+Y E+ ++ + ++ + + L RI++LE E Sbjct: 65 WIWATMYDGEK----KNWLGAKPSISQQDYEQLLARINQLEQAKGEE 107 >UniRef50_C7RSB7 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RSB7_9PROT Length = 141 Score = 102 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 2/110 (1%) Query: 4 NYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLW 63 +Y L + + + + +P IA R HP A+A+ G+ L W Sbjct: 13 DYLTFLTLAMCVVALIMSWLFLAGLPGRIAIARKHPEAEAVKYLGYAGLLPTVYPWMQAL 72 Query: 64 IWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTD 113 IWA ++P ++ + TD EIA L S + + Sbjct: 73 IWA--FKPTDIVDIRRFPREEAIETDREIARLRGLPSTMHAAVVESSAAS 120 >UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVQ9_9VIBR Length = 106 Score = 101 bits (252), Expect = 6e-21, Method: Composition-based stats. Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 4/106 (3%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+Y +L + V L++ YG+I +HDIPY IAKKRNHPHADAIH AGW+SLF LHV+WP L Sbjct: 5 LDYASLAIFFVVLLILIYGLIILHDIPYEIAKKRNHPHADAIHVAGWISLFFLHVMWPVL 64 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAA 108 W+WAT+Y ++ Q + ++ +D + AL +RI LE + Sbjct: 65 WVWATMYDGDK----QQWLGARSAHSDKQYQALVERIDALEKSIKE 106 >UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7ULG4_RHOBA Length = 137 Score = 96.0 bits (237), Expect = 3e-19, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L +L L+ ++I I+ + +P IA++R+HP ADA++ AGW+ L T ++W Sbjct: 35 LRIVSLVFLLVFAVLILACIVGLAALPGKIARRRHHPFADAVNVAGWLGLPT-GIVWVLA 93 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQL 106 +WA + G + Q ++ L + LE Sbjct: 94 MVWAHM-----GPRGNNVSTDQTNRLATQVRQLETLVDSLEQTQ 132 >UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX63_9BACT Length = 143 Score = 91.3 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 12/120 (10%) Query: 3 LNYFALGV----LIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVI 58 L+ A G+ +I L+ +H +P IA+KR HP A AI +SL ++ Sbjct: 25 LDSLANGIAWVAIIIAPLIGIVAFWLVHILPEKIAEKRKHPQAGAIQCLCLLSLAFGGLL 84 Query: 59 WPFLWIWAT----LYQPERGWGM---QSHVASQEKATDPEIAALSDRISRLEHQLAAEKK 111 WP W+WA Y+ G + H S+EK E L RI+ LE ++ K Sbjct: 85 WPIAWLWAYSKPVFYRMAYGTDVAEPHGHAPSEEKPAS-ESEQLRTRIAELEAEIKKGKA 143 >UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q137J2_RHOPS Length = 120 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 6/112 (5%) Query: 2 FLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPF 61 FL++ L +L + + I + + +P IA R HP A AI+ GW+ L TL V+WP Sbjct: 11 FLHWLTLAILCVLPVAIGAVLYKLGGLPGSIAAARGHPQAAAINICGWMGLVTL-VLWPV 69 Query: 62 LWIWATLYQ-PERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKT 112 +WA L + P RG + ++ +S R++ +E +L Sbjct: 70 AMVWAHLDRAPTRGSPSSDSSR----SVVGKLQQVSQRLAAIEAELTRTTTA 117 >UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=B9NT40_9RHOB Length = 120 Score = 88.6 bits (218), Expect = 5e-17, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Query: 24 AIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVAS 83 I +P IA KRNHPHA+A+ GW+ + V W +IWA Sbjct: 32 FIMGLPGRIAIKRNHPHAEAVKMMGWMGFLAI-VPWVHAFIWAFHD---------GVTVD 81 Query: 84 QEKATDPEIAALSDRISRLEHQLAAEKKTDYST 116 + + E A+ D I RL + E + T Sbjct: 82 VRRGPEDERKAIRDEIKRLGGTVKPEYQDPLDT 114 >UniRef50_C0YIP7 Putative uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YIP7_9FLAO Length = 95 Score = 87.1 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Query: 4 NYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLW 63 N + +L+ + + Y +H P +A+K+ HP +AI + +SL ++WP Sbjct: 7 NAASWLILLVLPIAGIYLFWKVHIYPEKVAEKKKHPQLNAIKSMCLLSLVFGGLLWPVAL 66 Query: 64 IWATLYQPERGWGMQSHVASQEKATDPEIAALS 96 IWA +G Q+ + T+ E L Sbjct: 67 IWANYD-----YGNQNTSEKDTEITEEEFKTLE 94 >UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=A7IKV1_XANP2 Length = 83 Score = 80.5 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 42/77 (54%) Query: 2 FLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPF 61 F++ FA+ VL+ V + + P IA++R+HP A+A+ AGWV+L V+WP Sbjct: 3 FIDIFAIIVLVVVIASAVALFVILGMTPGAIARRRSHPWAEAVSVAGWVTLLCGFVLWPI 62 Query: 62 LWIWATLYQPERGWGMQ 78 IWA + P R Q Sbjct: 63 ALIWAYVDVPARPERKQ 79 >UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=Cupriavidus RepID=Q0K0R7_RALEH Length = 136 Score = 70.1 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Query: 4 NYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLW 63 N + V+IFV L Y +H P +A ++ HP +AIH +SLF ++WP W Sbjct: 20 NAISWVVMIFVPLAAIYLFWMLHIWPDKVAHRKQHPQREAIHALCLLSLFFGGLLWPMAW 79 Query: 64 IWAT----LYQPERGWG 76 +WA Y+ G Sbjct: 80 LWAHTKPVFYRAAYGTD 96 >UniRef50_B9QYG9 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QYG9_9RHOB Length = 80 Score = 70.1 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 21 GIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLY--QPERGWGMQ 78 G + + P IAK+R H A+A+ G+ TL ++ P +IWA +P R G + Sbjct: 18 GWLFLAVWPGKIAKRRGHRRAEAVTMCGYWGALTLGLLMPIAFIWAYTDGEEPSRNSGAE 77 Query: 79 S 79 Sbjct: 78 G 78 >UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacteria RepID=D2AAG4_SHIF2 Length = 46 Score = 69.0 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 42/45 (93%), Positives = 44/45 (97%) Query: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIH 45 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 >UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3N9_9GAMM Length = 73 Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 8/67 (11%) Query: 52 LFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIAALS-------DRISRLEH 104 +FTLHV+WPFLWIWATLY+PERGWG Q +Q++ + I AL +R++ LE Sbjct: 1 MFTLHVLWPFLWIWATLYRPERGWGFQQV-QAQQRTDETLITALQEKLDAQSERLTLLEQ 59 Query: 105 QLAAEKK 111 LA +K+ Sbjct: 60 ALAEKKE 66 >UniRef50_C9QAC2 Permease n=5 Tax=Vibrio RepID=C9QAC2_9VIBR Length = 145 Score = 45.5 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+ A +L+ + YG +H+IP A ++H I W+ H +W Sbjct: 45 LHIVAGFILVASVVAGVYGFWKLHEIPINKAHSKDHHQIGLITALTWIGFLW-HWVWVVA 103 Query: 63 WIWATLY 69 I A + Sbjct: 104 VILAFVD 110 >UniRef50_Q89PJ8 Blr3482 protein n=2 Tax=Bradyrhizobiaceae RepID=Q89PJ8_BRAJA Length = 161 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Query: 9 GVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFT-LHVIWPFLWIWAT 67 LI L + +H +P +A K + + G +SLFT +H+ W + A Sbjct: 42 IFLIGTVLWVGTLYWKLHSLPERMAHKSQKLQFEFVAVLGLISLFTHMHIFWVAGLLLAL 101 Query: 68 LYQPERGWGMQSHVASQEKATD 89 + P+ G ++S S E+ D Sbjct: 102 IDLPDFGTPLRSIAGSVERIAD 123 >UniRef50_A3XTI9 Permease of the major facilitator superfamily protein n=21 Tax=Gammaproteobacteria RepID=A3XTI9_9VIBR Length = 116 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+ A VL+ YG +H++P A + H I W+ F H +W Sbjct: 17 LHVVAGVVLVATIAAACYGFWRVHELPINKAHSKEHHQLGLITALTWIG-FIWHWVWVLA 75 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSD 97 I A + + ++ + + T ++ D Sbjct: 76 VILAFVDMEKAIINLRDTWKAPAEPTGQQVKNDQD 110 >UniRef50_Q162X5 Putative uncharacterized protein n=6 Tax=Rhodobacteraceae RepID=Q162X5_ROSDO Length = 142 Score = 43.2 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 3/97 (3%) Query: 6 FALGVLIFVFLVIFYG--IIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFT-LHVIWPFL 62 F V V +VI G +H IP +A K NHP + ++LFT + W Sbjct: 35 FTFMVFFTVAIVILIGVAYFTLHAIPEKLAHKSNHPQFQLVGILSLLALFTHNGLFWVAA 94 Query: 63 WIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRI 99 + A P+ +++ + ++ + A + Sbjct: 95 ILVAGFQFPDFSSPLRAIADAIDRNGSHDTPAAAQTP 131 >UniRef50_Q47WJ6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WJ6_COLP3 Length = 125 Score = 42.0 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 9 GVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFT-LHVIWPFLWIWAT 67 +LI + L+ +H +P IA +NH I ++LFT ++ W + A Sbjct: 24 VILIVLVLIAGVFYFKLHAVPEHIAHGKNHTQIQLITILTILALFTHNNIFWVAALVLAV 83 Query: 68 LYQPERGWGMQSHVASQEKATDPEIAALSDR 98 + P+ +QS S + + Sbjct: 84 VELPDFLTPLQSIAKSLTTIAQSKEQKTQKK 114 >UniRef50_Q88MJ5 Immunity protein, putative n=1 Tax=Pseudomonas putida KT2440 RepID=Q88MJ5_PSEPK Length = 107 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Query: 17 VIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLYQPERGWG 76 +I ++ +P +IA KR+H + AI + L V+W IWA + +P Sbjct: 10 LILAVSFVLYFLPMMIAFKRHHENYTAIFMLNLL-LGWTGVVWIVCLIWAFISKPVPVGQ 68 Query: 77 MQSHVASQEKATDPEIAALSDRISRLEHQLAAEKK 111 ++ +S +I+AL + + EK Sbjct: 69 IERVGSSSRYEELEKISALRSSGALTAEEFDREKS 103 >UniRef50_A7JYU4 Permease n=9 Tax=Gammaproteobacteria RepID=A7JYU4_VIBSE Length = 108 Score = 40.5 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 3 LNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFL 62 L+ A VLI YG IH++P A ++H I W+ F H +W Sbjct: 17 LHVVAAVVLIASVAGACYGFWKIHELPINKAHSKDHHQIGLITALTWIG-FVWHWVWVLA 75 Query: 63 WIWATLY 69 I+A + Sbjct: 76 VIFAFVD 82 >UniRef50_A8LP45 Putative uncharacterized protein n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LP45_DINSH Length = 131 Score = 40.5 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 1/86 (1%) Query: 2 FLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFT-LHVIWP 60 FL F + LI V L + +H +P +A + N I ++LFT ++ W Sbjct: 27 FLMSFMVVFLIAVILGLGVAYFTLHALPEKMAHRSNAVQLQLISVLAMLALFTHNNLFWV 86 Query: 61 FLWIWATLYQPERGWGMQSHVASQEK 86 + A P+ + S S Sbjct: 87 AALVLAAFRPPDFITPLNSIAQSLRN 112 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.319 0.129 0.351 Lambda K H 0.267 0.0395 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 595,329,705 Number of Sequences: 3077464 Number of extensions: 19184116 Number of successful extensions: 113525 Number of sequences better than 1.0e-01: 31 Number of HSP's better than 0.1 without gapping: 58 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 113447 Number of HSP's gapped (non-prelim): 75 length of query: 120 length of database: 1,040,396,356 effective HSP length: 87 effective length of query: 33 effective length of database: 772,656,988 effective search space: 25497680604 effective search space used: 25497680604 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 87 (38.2 bits)