Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	T	T	R	T	A	R	Q	C	G	Q	A	D	Y	G	W	L	Q	A	R	Y	T	F	S	F	G	H	Y	F	D	P	K	L	L	G	Y	A	S	L	R	V	L	N	Q	E	V	L	A	P	G	A	A	F	Q	P	R	T	Y	P
Secondary structure
SS confidence
Disorder		?	?				?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	V	D	I	L	N	V	I	L	D	G	E	A	E	Y	R	D	S	E	G	N	H	V	Q	A	S	A	G	E	A	L	L	L	S	T	Q	P	G	V	S	Y	S	E	H	N	L	S	K	D	K	P	L	T	R	M	Q	L	W	L	D
Secondary structure
SS confidence
Disorder																		?		?		?	?																								?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	C	P	Q	R	E	N	P	L	I	Q	K	L	A	L	N	M	G	K	Q	Q	L	I	A	S	P	E	G	A	M	G	S	L	Q	L	R	Q	Q	V	W	L	H	H	I	V	L	D	K	G	E	S	A	N	F	Q	L	H	G	P	R
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?				?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence		A	Y	L	Q	S	I	H	G	K	F	H	A	L	T	H	H	E	E	K	A	A	L	T	C	G	D	G	A	F	I	R	D	E	A	N	I	T	L	V	A	D	S	P	L	R	A	L	L	I	D	L	P	V
Secondary structure
SS confidence
Disorder															?	?	?	?	?	?														?																		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tq5 chain A domain 1 Region: 1 - 232 Aligned: 227 Modelled: 230 Confidence: 100.0% Identity: 33% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Pirin-like Phyre2 PDB 2vec chain A Region: 7 - 233 Aligned: 226 Modelled: 227 Confidence: 100.0% Identity: 99% PDB header:cytosolic protein Chain: A: PDB Molecule:pirin-like protein yhak; PDBTitle: the crystal structure of the protein yhak from escherichia2 coli Phyre2 PDB 2p17 chain A Region: 37 - 230 Aligned: 187 Modelled: 194 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pirin-like protein; PDBTitle: crystal structure of gk1651 from geobacillus kaustophilus Phyre2 PDB 1j1l chain A Region: 31 - 229 Aligned: 197 Modelled: 199 Confidence: 100.0% Identity: 15% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Pirin-like Phyre2 PDB 1sfn chain A Region: 47 - 229 Aligned: 177 Modelled: 183 Confidence: 99.2% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1sq4 chain A Region: 34 - 229 Aligned: 189 Modelled: 186 Confidence: 99.1% Identity: 16% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1sef chain A Region: 36 - 229 Aligned: 185 Modelled: 190 Confidence: 99.0% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1sef chain A Region: 36 - 229 Aligned: 185 Modelled: 194 Confidence: 99.0% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis Phyre2 PDB 3o14 chain B Region: 41 - 229 Aligned: 168 Modelled: 186 Confidence: 99.0% Identity: 15% PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution Phyre2 PDB 3h7y chain A Region: 47 - 231 Aligned: 177 Modelled: 185 Confidence: 99.0% Identity: 12% PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form Phyre2 PDB 1rc6 chain A Region: 42 - 229 Aligned: 179 Modelled: 185 Confidence: 98.9% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 3rns chain A Region: 47 - 229 Aligned: 164 Modelled: 159 Confidence: 98.9% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis Phyre2 PDB 2d40 chain C Region: 47 - 230 Aligned: 179 Modelled: 180 Confidence: 98.7% Identity: 13% PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 Phyre2 PDB 1y3t chain A domain 1 Region: 38 - 232 Aligned: 191 Modelled: 195 Confidence: 98.7% Identity: 16% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 2ozi chain A Region: 40 - 117 Aligned: 74 Modelled: 78 Confidence: 98.6% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 Phyre2 PDB 2d40 chain A domain 1 Region: 47 - 230 Aligned: 178 Modelled: 180 Confidence: 98.6% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 3h8u chain A Region: 24 - 129 Aligned: 102 Modelled: 106 Confidence: 98.6% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution Phyre2 PDB 2vqa chain C Region: 43 - 231 Aligned: 186 Modelled: 188 Confidence: 98.5% Identity: 12% PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. Phyre2 PDB 2phd chain A domain 1 Region: 47 - 230 Aligned: 179 Modelled: 182 Confidence: 98.4% Identity: 17% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 1juh chain A Region: 38 - 229 Aligned: 187 Modelled: 184 Confidence: 98.2% Identity: 16% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 1 d1tq5a1 2 c2vecA_ 3 c2p17A_ 4 d1j1la_ 5 d1sfna_ 6 d1sq4a_ 7 d1sefa_ 8 c1sefA_ 9 c3o14B_ 10 c3h7yA_ 11 d1rc6a_ 12 c3rnsA_ 13 c2d40C_ 14 d1y3ta1 15 c2oziA_ 16 d2d40a1 17 c3h8uA_ 18 c2vqaC_ 19 d2phda1 20 d1juha_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tq5a1 100.0 33 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 2 c2vecA_ 100.0 99 PDB header:cytosolic protein Chain: A: PDB Molecule:pirin-like protein yhak; PDBTitle: the crystal structure of the protein yhak from escherichia2 coli 3 c2p17A_ 100.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pirin-like protein; PDBTitle: crystal structure of gk1651 from geobacillus kaustophilus 4 d1j1la_ 100.0 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 5 d1sfna_ 99.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 6 d1sq4a_ 99.1 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 7 d1sefa_ 99.0 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 8 c1sefA_ 99.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 9 c3o14B_ 99.0 15 PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution 10 c3h7yA_ 99.0 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 11 d1rc6a_ 98.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 12 c3rnsA_ 98.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 13 c2d40C_ 98.7 13 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 14 d1y3ta1 98.7 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 15 c2oziA_ 98.6 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 16 d2d40a1 98.6 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 17 c3h8uA_ 98.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 18 c2vqaC_ 98.5 12 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 19 d2phda1 98.4 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 20 d1juha_ 98.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 21 c3i7dB_ not modelled 98.1 16 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 22 c2fqpD_ not modelled 98.1 16 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 23 c3myxA_ not modelled 98.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 24 c2cauA_ not modelled 98.0 17 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 25 d2f4pa1 not modelled 97.9 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 26 d1j58a_ not modelled 97.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 27 d1o4ta_ not modelled 97.9 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 28 c3l2hD_ not modelled 97.9 14 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 29 c3es1A_ not modelled 97.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 30 c2oa2A_ not modelled 97.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 31 c2vpvA_ not modelled 97.7 15 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 32 c2gu9B_ not modelled 97.7 20 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 33 d1yhfa1 not modelled 97.7 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 34 c3ibmB_ not modelled 97.7 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 35 d1vj2a_ not modelled 97.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 36 c3fjsC_ not modelled 97.6 15 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 37 c2ozjB_ not modelled 97.6 15 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 38 d2b8ma1 not modelled 97.5 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 39 d1v70a_ not modelled 97.5 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 40 c2pfwB_ not modelled 97.4 20 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 41 c1fxzC_ not modelled 97.4 17 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 42 c2q30C_ not modelled 97.4 9 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 43 d1y9qa2 not modelled 97.4 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 44 c3jzvA_ not modelled 97.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 45 c3kgzA_ not modelled 97.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 46 c3cewA_ not modelled 97.1 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 47 c3ht2A_ not modelled 97.1 14 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 48 d1lr5a_ not modelled 97.1 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 49 c3c3vA_ not modelled 97.1 18 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 50 c3kglB_ not modelled 97.0 15 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 51 d3bu7a1 not modelled 97.0 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 52 c3bu7A_ not modelled 97.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 53 c2o8qA_ not modelled 96.9 22 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 54 c2eaaB_ not modelled 96.9 17 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 55 c3ebrA_ not modelled 96.8 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution 56 c2z2sD_ not modelled 96.7 26 PDB header:transcription Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr; PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr 57 d1uika1 not modelled 96.7 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 58 c2d5fB_ not modelled 96.7 15 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 59 c3bcwB_ not modelled 96.6 27 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 60 c3kscD_ not modelled 96.6 14 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 61 c2i45C_ not modelled 96.5 12 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 62 d2et1a1 not modelled 96.4 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 63 d1fxza1 not modelled 96.4 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 64 d3elna1 not modelled 96.3 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 65 d2bnma2 not modelled 96.2 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 66 c3qacA_ not modelled 96.2 16 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 67 d1dgwa_ not modelled 96.2 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 68 c2xlfA_ not modelled 96.1 17 PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet) 69 c3ehkC_ not modelled 96.0 12 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 70 c3lwcA_ not modelled 96.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 71 c3s7eB_ not modelled 95.9 17 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 72 c3cjxE_ not modelled 95.6 14 PDB header:unknown function Chain: E: PDB Molecule:protein of unknown function with a cupin-like fold; PDBTitle: crystal structure of a protein of unknown function with a cupin-like2 fold (reut_b4571) from ralstonia eutropha jmp134 at 2.60 a resolution 73 d1j3pa_ not modelled 95.6 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 74 d1yfua1 not modelled 95.2 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 75 c3d82A_ not modelled 95.2 11 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 76 d2phla1 not modelled 95.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 77 d2o1qa1 not modelled 94.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acetylacetone-cleaving enzyme-like 78 d2pyta1 not modelled 94.7 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 79 d2phla2 not modelled 94.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 80 d1uija1 not modelled 94.5 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 81 d2ic1a1 not modelled 94.4 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 82 d1x82a_ not modelled 94.3 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 83 c3balB_ not modelled 94.1 14 PDB header:oxidoreductase Chain: B: PDB Molecule:acetylacetone-cleaving enzyme; PDBTitle: crystal structure of an acetylacetone dioxygenase from2 acinetobacter johnsonii 84 d1ylla1 not modelled 93.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:PA5104-like 85 c2e9qA_ not modelled 93.7 17 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 86 d2gm6a1 not modelled 93.1 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 87 d1od5a2 not modelled 92.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 88 d1o5ua_ not modelled 92.7 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 89 d1uija2 not modelled 92.5 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 90 d1uika2 not modelled 92.4 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 91 c2bnoA_ not modelled 92.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 92 c1cauB_ not modelled 92.0 22 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 93 c3es4B_ not modelled 91.9 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 94 d1fxza2 not modelled 91.7 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 95 c1uijA_ not modelled 91.0 18 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 96 c1y9qA_ not modelled 90.5 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 97 c3eqeB_ not modelled 90.2 9 PDB header:oxidoreductase Chain: B: PDB Molecule:putative cystein deoxygenase; PDBTitle: crystal structure of the yubc protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr112. 98 d1od5a1 not modelled 89.3 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 99 c2qjvB_ not modelled 89.3 14 PDB header:isomerase Chain: B: PDB Molecule:uncharacterized iolb-like protein; PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution 100 d1pmia_ not modelled 85.9 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 101 d1zvfa1 not modelled 80.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 102 d1zrra1 not modelled 80.0 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 103 c3h1yA_ not modelled 77.5 17 PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) 104 c2npiB_ not modelled 72.0 15 PDB header:transcription Chain: B: PDB Molecule:protein clp1; PDBTitle: clp1-atp-pcf11 complex 105 c2opkC_ not modelled 67.1 6 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 106 d1zx5a1 not modelled 65.8 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 107 c3esgA_ not modelled 64.9 13 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of hutd from pseudomonas fluorescens sbw25 108 c2qdrA_ not modelled 64.9 16 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative dioxygenase (npun_f5605) from nostoc2 punctiforme pcc 73102 at 2.60 a resolution 109 c3pvbB_ not modelled 64.1 14 PDB header:transferase Chain: B: PDB Molecule:camp-dependent protein kinase type i-alpha regulatory PDBTitle: crystal structure of (73-244)ria:c holoenzyme of camp-dependent2 protein kinase 110 c3ogjD_ not modelled 60.0 11 PDB header:transferase Chain: D: PDB Molecule:prkg1 protein; PDBTitle: crystal structure of partial apo (92-227) of cgmp-dependent protein2 kinase 111 d1ne6a1 not modelled 58.4 16 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 112 d1gp6a_ not modelled 55.0 11 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 113 d1zyba2 not modelled 51.3 13 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 114 d1ft9a2 not modelled 48.5 12 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:CO-sensing protein CooA, N-terminal domain 115 d2oz6a2 not modelled 47.1 12 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 116 c2z69A_ not modelled 46.6 18 PDB header:transcription regulator Chain: A: PDB Molecule:dnr protein; PDBTitle: crystal structure of the sensor domain of the transcriptional2 regulator dnr from pseudomonas aeruginosa 117 d3e5ua2 not modelled 44.3 16 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 118 d2coha2 not modelled 40.6 15 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 119 d2gaua2 not modelled 37.5 15 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 120 d2h6ca2 not modelled 33.0 14 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0