16/01/2012 13:45:31 : INFO  : Run start: Mon Jan 16 13:45:31 GMT 2012
16/01/2012 13:45:32 : INFO  : Initialised job
16/01/2012 13:45:32 : INFO  : Renaming log file 'phyre2_20120116_134531.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/phyre_20120116_134531.log'
16/01/2012 13:45:32 : INFO  : Initialised job:
Sequence
>batch____
MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEILLIDDGSSDNSAHMLVE
ASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEG
YDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHER
STFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLINLMYDLVTCLTTTPLRMLSLLG
SIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAVLFTFIGAQFIGMGLLGEYIGRIYT
DVRARPRYFVQQVIRPSSKENE

16/01/2012 13:45:32 : INFO  : Checked sequence
16/01/2012 13:45:32 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 13:45:32 : INFO  : PSI-BLAST 3 iterations
16/01/2012 13:48:15 : INFO  : PSI-BLAST 5 iterations
16/01/2012 13:52:12 : INFO  : Finished PSI-BLAST
16/01/2012 13:52:12 : INFO  : Running Buildali to generate a3m file
16/01/2012 15:54:46 : INFO  : Converting to HMM
16/01/2012 15:54:54 : INFO  : Calibrating HMM
16/01/2012 15:55:02 : INFO  : Searching HMM database
16/01/2012 16:01:03 : INFO  : Finished buildali
16/01/2012 16:01:03 : INFO  : Predicting secondary structure
16/01/2012 16:01:03 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 16:01:03 : INFO  : Predicting Disordered regions
16/01/2012 16:01:03 : INFO  : Predicted Disorder (Disopred)
16/01/2012 16:01:03 : INFO  : Running memsat_svm check
16/01/2012 16:02:23 : INFO  : Running memsat_svm full
16/01/2012 16:07:55 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd0fcf06abf6872f2'
16/01/2012 16:07:55 : INFO  : Initialising fold library search
16/01/2012 16:07:55 : INFO  : Initialised search input
16/01/2012 16:07:55 : INFO  : Building Ensemble models
16/01/2012 16:07:55 : INFO  : Building hh.c1xhbA_.model.1.pdb
16/01/2012 16:07:56 : INFO  : Building hh.d1xhba2.model.2.pdb
16/01/2012 16:07:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/hh.d1xhba2.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/d1xhba2.2.pdb
16/01/2012 16:07:56 : INFO  : Building hh.c3f1yC_.model.3.pdb
16/01/2012 16:07:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/hh.c3f1yC_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/c3f1yC_.3.pdb
16/01/2012 16:07:57 : INFO  : Building hh.c2ffuA_.model.4.pdb
16/01/2012 16:07:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/hh.c2ffuA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/c2ffuA_.4.pdb
16/01/2012 16:07:57 : INFO  : Building hh.c2d7iA_.model.5.pdb
16/01/2012 16:07:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/hh.c2d7iA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/c2d7iA_.5.pdb
16/01/2012 16:07:57 : INFO  : Building hh.c3ckvA_.model.6.pdb
16/01/2012 16:07:58 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/hh.c3ckvA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d0fcf06abf6872f2/c3ckvA_.6.pdb
16/01/2012 16:07:58 : INFO  : Building c1xhbA_.1.pdb
16/01/2012 16:07:58 : INFO  : Building d1xhba2.2.pdb
16/01/2012 16:07:59 : INFO  : Building c3f1yC_.3.pdb
16/01/2012 16:07:59 : INFO  : Building c2ffuA_.4.pdb
16/01/2012 16:07:59 : INFO  : Building c2d7iA_.5.pdb
16/01/2012 16:08:00 : INFO  : Building c3ckvA_.6.pdb
16/01/2012 16:08:00 : INFO  : Building c2z86D_.7.pdb
16/01/2012 16:08:01 : INFO  : Building c3bcvA_.8.pdb
16/01/2012 16:08:01 : INFO  : Building d1omza_.9.pdb
16/01/2012 16:08:01 : INFO  : Building c1omxB_.10.pdb
16/01/2012 16:08:02 : INFO  : Building d1qg8a_.11.pdb
16/01/2012 16:08:02 : INFO  : Building d2bo4a1.12.pdb
16/01/2012 16:08:02 : INFO  : Building c2qgiA_.13.pdb
16/01/2012 16:08:03 : INFO  : Building d1pzta_.14.pdb
16/01/2012 16:08:03 : INFO  : Building c3lw6A_.15.pdb
16/01/2012 16:08:03 : INFO  : Building d1fo8a_.16.pdb
16/01/2012 16:08:04 : INFO  : Building c2wvmA_.17.pdb
16/01/2012 16:08:04 : INFO  : Building c2zu8A_.18.pdb
16/01/2012 16:08:04 : INFO  : Building c2d0jD_.19.pdb
16/01/2012 16:08:05 : INFO  : Building d1v82a_.20.pdb
16/01/2012 16:08:14 : INFO  : Finished HH model building
16/01/2012 16:08:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 16:08:19 : INFO  : html domain output complete ID 'd0fcf06abf6872f2'
16/01/2012 16:56:43 : INFO  : Run end  : Mon Jan 16 16:56:43 GMT 2012
