81 c3polA_ Probab=26.16   E-value=41  Score=13.54  Aligned_columns=130  Identities=15%

Q ss_pred             CCCCCCCEEEEEEECCCCHHHHH----------HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             98789974899982387068899----------99999999852578874999987844935489999998413994399
Q batch____         2 FEIHPVKKVSVVIPVYNEQESLP----------ELIRRTTTACESLGKEYEILLIDDGSSDNSAHMLVEASQAENSHIVS   71 (322)
Q Consensus         2 ~~~~~~pkVSIiIPayNE~~~I~----------~~l~sl~~~l~~~~~~~eIivVdD~StD~T~e~~~~~~~~~~~~~~~   71 (322)
                      ||=+.=++..|||||.-....++          ..|+..-..+.+....-+|+|+-+.      +-+......+....+.
T Consensus         3 ~~~~~~~~~~vIi~A~~~s~Rl~~K~Ll~v~Gkpli~~~i~~l~~~~~~~~iiVv~~~------~~~~~~~~~~~~~~~~   76 (262)
T c3polA_           3 IDDDDKHMKHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD------ERIAEICRAEGVDVVL   76 (262)
T ss_dssp             SSCTTCCCEEEEEECCSCCTTSTTGGGSEETTEEHHHHHHHHHTTCCSCSEEEEEESC------HHHHHHHHTTTCEEEE
T ss_pred             CCCHHCCCEEEEEECCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCCCEEEEECCH------HHHHHHHHHCCCCEEE
T ss_conf             6700088759999448778899871144368565799999999848998289997695------8889999753994999


Q ss_pred             EECCCCCCCHHHHHHHHHHH--CCCCEEEECCCC-CCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHH
Q ss_conf             63753263136776789971--337348862888-8782442787775307981999986368841789
Q batch____        72 ILLNRNYGQHSAIMAGFSHV--TGDLIITLDADL-QNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFR  137 (322)
Q Consensus        72 ~~~~~~~~~~~~~n~~~~~a--~~~~i~~~DaD~-~~~~~~i~~~~~~~~~~~~~v~g~~~~~~~~~~~  137 (322)
                      .......+...+........  ..+.+++.++|. ..+++.+..++.........+......+......
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~d~p~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (262)
T c3polA_          77 TSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDE  145 (262)
T ss_dssp             CCSCCCCHHHHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCHHH
T ss_conf             648876512689999985004689889998289533359999999999997699357564454048767