09/01/2012 12:45:18 : INFO  : Run start: Mon Jan  9 12:45:18 GMT 2012
09/01/2012 12:45:20 : INFO  : Initialised job
09/01/2012 12:45:21 : INFO  : Renaming log file 'phyre2_20120109_124518.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/phyre_20120109_124518.log'
09/01/2012 12:45:22 : INFO  : Initialised job:
Sequence
>batch____
MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPLLISYFIDNMVAKNNLP
LKVVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSEFDTQP
VGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAMFSLDWRMALVAIMIFPVVLV
VMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQQFRQQARFGERMGEASRSHYMA
RMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIE
LTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGTIEVDNVSFAYRDDNLVLKNI
NLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSALRQGVAMV
QQDPVVLADTFLANVTLGRDISEERVWQALETVQLAELARSMSDGIYTPLGEQGNNLSVG
QKQLLALARVLVETPQILILDEATASIDSGTEQAIQHALAAVREHTTLVVIAHRLSTIVD
ADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAGEELAASVREEESLSA

09/01/2012 12:45:22 : INFO  : Checked sequence
09/01/2012 12:45:23 : INFO  : Finding homologues with PSI-BLAST
09/01/2012 12:45:24 : INFO  : PSI-BLAST 3 iterations
09/01/2012 12:49:19 : INFO  : PSI-BLAST 5 iterations
09/01/2012 12:55:26 : INFO  : Finished PSI-BLAST
09/01/2012 12:55:26 : INFO  : Running Buildali to generate a3m file
09/01/2012 16:03:06 : INFO  : Converting to HMM
09/01/2012 16:04:29 : INFO  : Calibrating HMM
09/01/2012 16:04:53 : INFO  : Searching HMM database
09/01/2012 16:19:28 : INFO  : Finished buildali
09/01/2012 16:19:29 : INFO  : Predicting secondary structure
09/01/2012 16:19:33 : INFO  : Predicted secondary structure (PSI-Pred)
09/01/2012 16:19:33 : INFO  : Predicting Disordered regions
09/01/2012 16:19:35 : INFO  : Predicted Disorder (Disopred)
09/01/2012 16:19:36 : INFO  : Running memsat_svm check
09/01/2012 16:22:51 : INFO  : Running memsat_svm full
09/01/2012 16:30:08 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd08ba3b21f254b55'
09/01/2012 16:30:09 : INFO  : Initialising fold library search
09/01/2012 16:30:11 : INFO  : Initialised search input
09/01/2012 16:30:13 : INFO  : Building Ensemble models
09/01/2012 16:30:15 : INFO  : Building hh.c2hydB_.model.1.pdb
09/01/2012 16:30:25 : INFO  : Building hh.c2yl4A_.model.2.pdb
09/01/2012 16:30:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/hh.c2yl4A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/c2yl4A_.2.pdb
09/01/2012 16:30:35 : INFO  : Building hh.c3b5wE_.model.3.pdb
09/01/2012 16:30:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/hh.c3b5wE_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/c3b5wE_.3.pdb
09/01/2012 16:30:57 : INFO  : Building hh.c3g5uB_.model.4.pdb
09/01/2012 16:31:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/hh.c3g5uB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/c3g5uB_.4.pdb
09/01/2012 16:31:09 : INFO  : Building hh.c3b5xB_.model.5.pdb
09/01/2012 16:31:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/hh.c3b5xB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d08ba3b21f254b55/c3b5xB_.5.pdb
09/01/2012 16:31:23 : INFO  : Building c2hydB_.1.pdb
09/01/2012 16:31:33 : INFO  : Building c2yl4A_.2.pdb
09/01/2012 16:31:43 : INFO  : Building c3b5wE_.3.pdb
09/01/2012 16:32:04 : INFO  : Building c3g5uB_.4.pdb
09/01/2012 16:32:16 : INFO  : Building c3b5xB_.5.pdb
09/01/2012 16:32:31 : INFO  : Building c3nhaA_.6.pdb
09/01/2012 16:32:40 : INFO  : Building d3b60a1.7.pdb
09/01/2012 16:32:50 : INFO  : Building d2pmka1.8.pdb
09/01/2012 16:32:59 : INFO  : Building d2hyda1.9.pdb
09/01/2012 16:33:09 : INFO  : Building d1mv5a_.10.pdb
09/01/2012 16:33:19 : INFO  : Building d1jj7a_.11.pdb
09/01/2012 16:33:28 : INFO  : Building c2cbzA_.12.pdb
09/01/2012 16:33:38 : INFO  : Building c2iw3B_.13.pdb
09/01/2012 16:33:48 : INFO  : Building c2r6fA_.14.pdb
09/01/2012 16:34:00 : INFO  : Building c2ghiD_.15.pdb
09/01/2012 16:34:09 : INFO  : Building d1pf4a1.16.pdb
09/01/2012 16:34:17 : INFO  : Building c2pzfB_.17.pdb
09/01/2012 16:34:27 : INFO  : Building c2olkD_.18.pdb
09/01/2012 16:34:37 : INFO  : Building c3gd7C_.19.pdb
09/01/2012 16:34:46 : INFO  : Building d1xmia_.20.pdb
09/01/2012 16:36:08 : INFO  : Finished HH model building
09/01/2012 16:36:10 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/01/2012 16:37:12 : INFO  : html domain output complete ID 'd08ba3b21f254b55'
09/01/2012 17:54:52 : INFO  : Run end  : Mon Jan  9 17:54:52 GMT 2012
