BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (670 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 1371 0.0 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 523 e-146 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 520 e-145 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 498 e-139 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 438 e-121 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 430 e-118 UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator... 405 e-111 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 399 e-109 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 399 e-109 UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis F... 392 e-107 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 387 e-106 UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax... 385 e-105 UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Ca... 361 6e-98 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 359 2e-97 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 350 9e-95 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 350 9e-95 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 349 2e-94 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 345 5e-93 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 341 4e-92 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 340 1e-91 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 337 1e-90 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 337 1e-90 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 336 1e-90 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 336 2e-90 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 336 2e-90 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 335 3e-90 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 334 6e-90 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 331 7e-89 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 330 8e-89 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 328 3e-88 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 328 6e-88 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 327 7e-88 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 327 9e-88 UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Prote... 327 1e-87 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 326 2e-87 UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regula... 325 3e-87 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 323 9e-87 UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pire... 323 1e-86 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 323 1e-86 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 323 1e-86 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 322 4e-86 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 321 7e-86 UniRef50_B2S230 Formate hydrogenlyase transcriptional activator ... 321 7e-86 UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with ... 320 8e-86 UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis f... 320 1e-85 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 320 1e-85 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 320 2e-85 UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional r... 317 1e-84 UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis ... 317 1e-84 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 316 2e-84 UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-ty... 316 2e-84 UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis F... 315 3e-84 UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desul... 313 1e-83 UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-bind... 313 2e-83 UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis ... 311 4e-83 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 311 4e-83 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 311 4e-83 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 311 5e-83 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 310 1e-82 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 310 1e-82 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 310 2e-82 UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 in... 309 2e-82 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 309 2e-82 UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Ga... 309 2e-82 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 308 3e-82 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 307 8e-82 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 307 9e-82 UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional... 306 1e-81 UniRef50_Q12K16 DNA-binding protein Fis / transcriptional regula... 306 1e-81 UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with ... 306 1e-81 UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis F... 306 2e-81 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 306 2e-81 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 306 2e-81 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 305 3e-81 UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis F... 304 7e-81 UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis F... 303 1e-80 UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulato... 302 2e-80 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 302 2e-80 UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis F... 302 3e-80 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 301 4e-80 UniRef50_A6EHC5 Two component, sigma54 specific, transcriptional... 301 4e-80 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 301 5e-80 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 301 5e-80 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 301 5e-80 UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desu... 300 8e-80 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 300 9e-80 UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis ... 299 2e-79 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 299 3e-79 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 299 3e-79 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 298 3e-79 UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=... 298 4e-79 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 298 5e-79 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 297 9e-79 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 297 1e-78 UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing pr... 296 2e-78 UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional... 296 2e-78 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 296 2e-78 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 296 2e-78 UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis ... 295 3e-78 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 295 4e-78 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 295 5e-78 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 295 5e-78 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 294 6e-78 UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis ... 294 6e-78 UniRef50_C7LQX0 Sigma54 specific transcriptional regulator with ... 293 1e-77 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 293 2e-77 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 293 2e-77 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 293 2e-77 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 292 3e-77 UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis F... 292 3e-77 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 292 4e-77 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 291 4e-77 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 291 5e-77 UniRef50_C7PDE5 Sigma54 specific transcriptional regulator, Fis ... 291 5e-77 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 290 9e-77 UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spir... 290 1e-76 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 290 1e-76 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 290 1e-76 UniRef50_A7HI74 Sigma54 specific transcriptional regulator, Fis ... 289 2e-76 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 289 2e-76 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 289 2e-76 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 288 3e-76 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 288 5e-76 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 288 5e-76 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 288 5e-76 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 288 5e-76 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 288 6e-76 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 288 6e-76 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 287 8e-76 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 287 1e-75 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 286 1e-75 UniRef50_A9G320 Sigma-54 dependent transcriptional regulator n=1... 286 1e-75 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 286 2e-75 UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis ... 286 2e-75 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 286 2e-75 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 286 2e-75 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 286 2e-75 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 285 3e-75 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 285 3e-75 UniRef50_C1SI14 Transcriptional regulator containing GAF, AAA-ty... 285 4e-75 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 285 4e-75 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 285 4e-75 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 285 5e-75 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 285 5e-75 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 285 6e-75 UniRef50_C6NYI4 Two component, sigma54 specific, transcriptional... 284 7e-75 UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional r... 284 7e-75 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 284 7e-75 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 284 8e-75 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 284 9e-75 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 283 1e-74 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 283 1e-74 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 283 1e-74 UniRef50_A9DEH7 PAS domain:sigma-54-dependent transcriptional re... 283 1e-74 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 283 2e-74 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 283 2e-74 UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2... 282 2e-74 UniRef50_Q07WT9 Transcriptional regulator, Fis family protein n=... 282 2e-74 UniRef50_B8K7S4 Polar flagellar protein FlaK n=2 Tax=Gammaproteo... 282 3e-74 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 282 3e-74 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 282 3e-74 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 282 3e-74 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 282 3e-74 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 281 4e-74 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 281 4e-74 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 281 5e-74 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 281 5e-74 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 281 6e-74 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 281 6e-74 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 281 8e-74 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 281 8e-74 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 280 9e-74 UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis F... 280 1e-73 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 280 1e-73 UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator,... 280 1e-73 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 280 1e-73 UniRef50_D2UDB2 Probable flagellar sigma-54 dependent transcript... 280 2e-73 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 280 2e-73 UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 ... 280 2e-73 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 279 2e-73 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 279 2e-73 UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis F... 279 2e-73 UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammapro... 279 2e-73 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 279 3e-73 UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammapro... 279 3e-73 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 279 3e-73 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 279 3e-73 UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulato... 279 3e-73 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 278 4e-73 UniRef50_B2A7L9 Putative sigma54 specific transcriptional regula... 278 4e-73 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 278 4e-73 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 278 5e-73 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 278 5e-73 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 278 5e-73 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 278 5e-73 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 278 6e-73 UniRef50_Q01Q08 Two component, sigma54 specific, transcriptional... 278 6e-73 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 278 6e-73 UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional... 278 6e-73 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 278 6e-73 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 278 7e-73 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 278 7e-73 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 277 8e-73 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 277 8e-73 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 277 8e-73 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 277 9e-73 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 277 9e-73 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 277 1e-72 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 277 1e-72 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 276 1e-72 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 276 2e-72 UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fi... 276 2e-72 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 276 2e-72 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 276 2e-72 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 276 2e-72 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 276 2e-72 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 276 2e-72 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 276 2e-72 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 276 2e-72 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 276 2e-72 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 276 2e-72 UniRef50_C1A631 Putative NtrC family two-component response regu... 276 3e-72 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 276 3e-72 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 275 3e-72 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 275 3e-72 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 275 3e-72 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 275 3e-72 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 275 3e-72 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 275 3e-72 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 275 4e-72 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 275 4e-72 UniRef50_C6PZ60 Putative sigma54 specific transcriptional regula... 275 5e-72 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 275 5e-72 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 275 6e-72 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 275 6e-72 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 275 6e-72 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 274 7e-72 UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional... 274 8e-72 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 274 9e-72 UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis ... 274 9e-72 UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis ... 273 1e-71 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 273 1e-71 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 273 1e-71 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 273 1e-71 UniRef50_B4SIJ8 Sigma54 specific transcriptional regulator, Fis ... 273 1e-71 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 273 2e-71 UniRef50_A9A0C3 Sigma54 specific transcriptional regulator, Fis ... 273 2e-71 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 273 2e-71 UniRef50_Q485M5 Flagellar regulatory protein A n=19 Tax=Gammapro... 273 2e-71 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 273 2e-71 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 1371 bits (3548), Expect = 0.0, Method: Compositional matrix adjust. Identities = 670/670 (100%), Positives = 670/670 (100%) Query: 1 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK 60 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK Sbjct: 1 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK 60 Query: 61 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF 120 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF Sbjct: 61 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF 120 Query: 121 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE 180 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE Sbjct: 121 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE 180 Query: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL Sbjct: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 Query: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL 300 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL Sbjct: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL 300 Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ Sbjct: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD Sbjct: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN Sbjct: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM Sbjct: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE Sbjct: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ Sbjct: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 Query: 661 RLGISVREVL 670 RLGISVREVL Sbjct: 661 RLGISVREVL 670 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 290/572 (50%), Positives = 390/572 (68%), Gaps = 33/572 (5%) Query: 104 FIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNA 163 FIR ++ ++ + +I+ V + N V LL ++RD+ R+LV ITNA Sbjct: 137 FIRQEDRPWSEKEYDRLHTFTQIVGVVAEQIQNRVNNNVDYDLLCRERDNFRILVAITNA 196 Query: 164 VLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMP 223 VLS LD+D+L+++VA+EIHH+F + ++S+VL HRKN K +++ + H + Sbjct: 197 VLSRLDIDELVSEVAKEIHHYFNIDAISIVLRSHRKN-KLNIYSTHYLDEHHPAHEQSEV 255 Query: 224 GESVLLTQTLQTRQPTLTHRADDLFLWQRDPL------LLLLASNGCESALLIPLTFGNH 277 E+ LT+ + + L + L +RDPL L N ++ L+PL G Sbjct: 256 DEAGTLTERVFKSKEMLL-----INLNERDPLAPYERMLFDTWGNQIQTLCLLPLMSGKT 310 Query: 278 TPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQ 337 G L LA +F+ N +LL+ IA+R+AIAV NA A++ + L+E L EN L+EQ Sbjct: 311 MLGVLKLAQCEEKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQ 370 Query: 338 LLSNLG--IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 L +N+ G+II +S+AM ++L+QV++VA+SDSTVLI GETGTGKE+IARAIH LS R Sbjct: 371 L-NNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRS 429 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 + +VK+NCAA+PA LLES+LFGH++GAFTGA GRFE+AD +LFLDE+GD+PLEL Sbjct: 430 GRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLEL 489 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 QPKLLRVLQE+E ERLG ++ I +VR+IAATNRDL +MV DR+FR+DL+YRLNVFP++L Sbjct: 490 QPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQL 549 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLR+RPEDIPLL K FT K+AR M R ID+IP E LR L S +WPGNVRELENV+ERAV Sbjct: 550 PPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVVERAV 609 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND---EEERQRIVQVLR 632 LLTRGN L L LP + +++ P E+D E+E Q I++VL+ Sbjct: 610 LLTRGNVLQLS--------LPDI-------TAVTPDTSPVATESDKEGEDEYQLIIRVLK 654 Query: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ETNG+VAGP+GAA RLG+KRTTLLSRM+RLGI Sbjct: 655 ETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 291/573 (50%), Positives = 388/573 (67%), Gaps = 35/573 (6%) Query: 104 FIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNA 163 FIR ++ ++ +I++ V + + V LL ++RD+ R+LV ITNA Sbjct: 137 FIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNA 196 Query: 164 VLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD-LSASHCACLPRCM 222 VLS LD+D+L+++VA+EIH++F + +S+VL HRKN K +++ + L H A + Sbjct: 197 VLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKN-KLNIYSTHYLDKQHPAHEQSEV 255 Query: 223 PGESVLLTQTLQTRQPTLT--HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPG 280 L + ++++ L H DDL ++R +L N ++ L+PL G+ G Sbjct: 256 DEAGTLTERVFKSKEMLLINLHERDDLAPYER--MLFDTWGNQIQTLCLLPLMSGDTMLG 313 Query: 281 ALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS 340 L LA +F+ N LL+ IA+R+AIAV NA A++ + L+E L EN L+EQL + Sbjct: 314 VLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQL-N 372 Query: 341 NLG--IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKP 398 N+ G+II +S+AM +L+QV++VA+SDSTVLI GETGTGKE+IARAIH LS R ++ Sbjct: 373 NVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR 432 Query: 399 LVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPK 458 +VK+NCAA+PA LLES+LFGH++GAFTGA GRFE+AD +LFLDE+GD+PLELQPK Sbjct: 433 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 492 Query: 459 LLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPL 518 LLRVLQE+E ERLG ++ I +VR+IAATNRDL +MV DR+FRSDL+YRLNVFP+ LPPL Sbjct: 493 LLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 552 Query: 519 RDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 R+RPEDIPLLAK FT K+AR + R ID+IP E LR L + +WPGNVRELENVIERAVLLT Sbjct: 553 RERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 Query: 579 RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE-------NDEEERQRIVQVL 631 RGN L L L +LP P TP E+E Q IV+VL Sbjct: 613 RGNVLQLSL---PDIVLP----------------EPETPPAATVVALEGEDEYQLIVRVL 653 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +ETNG+VAGP+GAA RLG+KRTTLLSRM+RLGI Sbjct: 654 KETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 289/612 (47%), Positives = 385/612 (62%), Gaps = 55/612 (8%) Query: 99 MAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLV 158 + + FI + + + D T +A +I +++ L E +Q+ L +RDH+ +LV Sbjct: 132 LGGVEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEERLRGERDHNHILV 191 Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGD------HRKNEKFS-----LWC 207 ++TNAV+S L L+DL+ +V+R IH FFG+ VS+ L D ++ F +W Sbjct: 192 EVTNAVISKLKLEDLVDEVSRSIHRFFGVDFVSLDLVDPATATIKSRSVYFQKGLGPVWG 251 Query: 208 S---DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGC 264 S L AS A L +T+ P + RAD L + + LL + G Sbjct: 252 SAQGPLGASPMAPL--------------FETKAPRILARADLGALARGHDQMTLLTNAGF 297 Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 + A IPL H G L LA F++ N LL +A RI IAV NA A+ ++ L+ Sbjct: 298 QVACGIPLLSAGHVLGVLTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLK 357 Query: 325 ESLQQENHQLS-------EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 + L +EN QL+ E++ GDII S A+ +L+QV++VA SDSTVLI GET Sbjct: 358 DQLSRENKQLAKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGET 417 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE+IARAIH LS R+ + ++K+NCAAIP++LLES+LFGH+KGAFTGAI GRFE+ Sbjct: 418 GTGKELIARAIHMLSQRKKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFEL 477 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 AD GTLFLDE+GD+P++LQPKLLR LQEREIER+GG + IPV+VR+IAATNRDL MVE Sbjct: 478 ADRGTLFLDEVGDIPIDLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEK 537 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 R FR DL+YRLNVFP+ +PPLR+R EDIPL+A +F +K AR MNRAI+A E + L++ Sbjct: 538 RLFRGDLYYRLNVFPILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLN 597 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTL---NED------SALRSSM 608 WPGNVREL+NVIERAV+LT+G L+L + L P+ +ED +A+ S Sbjct: 598 LPWPGNVRELQNVIERAVILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSA 657 Query: 609 AQLLHPTTP-----------ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS 657 A P P + ER +I++VLRETNGIV GPRGAA LGMKRTTLLS Sbjct: 658 ASAPDPLPPPAGSSPNPGDLAGEAIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLS 717 Query: 658 RMQRLGISVREV 669 RM+RLGIS +EV Sbjct: 718 RMRRLGISPKEV 729 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/614 (41%), Positives = 370/614 (60%), Gaps = 19/614 (3%) Query: 66 RYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLAR 125 R+ + +T Y G + Y + + S + + FI + F + LA Sbjct: 99 RFRHRCEQLASTPVYDG-LHSYCQLPITTARSHLGGVEFISREANAFPMETLAKLTQLAA 157 Query: 126 IITPVLQSWLNDE---EQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIH 182 I+ L++ L+ E EQ +LRL +RD ++LVD+TNAV+ + + +L + +H Sbjct: 158 IVAIALENVLDKERTLEQANSLRL---ERDSCKILVDVTNAVIKLVRIAELPQSLFTILH 214 Query: 183 HFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTH 242 H FG++S+ + + ++ F + + + E L L +P + Sbjct: 215 HHFGISSLCLA-EYNATSDSFKSYLVNQQQREQPGIINHSCFEKNCLQGALGHSEPFFLY 273 Query: 243 RADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQH 302 R + +S+ ++PL + + G L+L+H + F++ + LL+ Sbjct: 274 REQGHGCQSSCRFTSQILPPDADSSCILPLRYRGNLLGVLILSHPQADFFADLDISLLEQ 333 Query: 303 IADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 +A R AIA+ N A + +++ + +E + +IIYQS ME +L++V Sbjct: 334 VAARTAIAMNNVQAQQEISNTTGA--REKTLRVDGPAPQGDFANIIYQSAVMEKVLEKVK 391 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 +VA+SD TVLI GETGTGKE+IA+AIH LS R D +VK+NCAAIP L+ES+LFGH+KG Sbjct: 392 LVAQSDCTVLILGETGTGKELIAQAIHALSARHDHEMVKVNCAAIPTGLIESDLFGHEKG 451 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 AFTGA+ GRFE A GTLFLDE+GD+PL+LQPKLLRVLQE E+ER+G S I ++VR Sbjct: 452 AFTGALTQRIGRFERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVR 511 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 ++AATN DL MV++++FRSDL+YRLNVFP+ELPPLR+R EDIPLL F +K+A+ M R Sbjct: 512 LVAATNCDLLSMVKNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRR 571 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH----LNVRQSRLLPTL 598 I +IP +A++ L+S W GN+RELEN+IERAV++TRG+ LNL L ++ + TL Sbjct: 572 TITSIPADAMKMLVSLPWYGNIRELENIIERAVVMTRGHVLNLSPDELLPLKGFHKIETL 631 Query: 599 NEDSALRSSMAQLLHPTTPEND----EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTT 654 D R + L P P+ D E+ER I++ L+ NGIVAG RGAA RLGMKRTT Sbjct: 632 VYDEPARELFREPL-PALPQGDEAQGEDERVSIIRALKACNGIVAGERGAAQRLGMKRTT 690 Query: 655 LLSRMQRLGISVRE 668 LLS+M+RLGIS ++ Sbjct: 691 LLSKMKRLGISAKD 704 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 238/559 (42%), Positives = 340/559 (60%), Gaps = 30/559 (5%) Query: 112 FTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLD 171 + ++ + +A + LN E QVA L++ D R+L+++ N++ S+L+L Sbjct: 159 YCKEEVRFLSLVADQAALAIDDALNFETSQVAQAALQRKNDRLRLLLEVNNSIASNLELR 218 Query: 172 DLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCM--PGESVLL 229 +L+ ++ I V + L + +N++ ++ D + + E Sbjct: 219 ELLRAISASIRPVMQCDGVGVALPEG-ENQQLRVYALDFPNGNGRVREDILIPANEDSPG 277 Query: 230 TQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSS 289 + Q +P ++ DP L + G ++ IPL N T G L LA Sbjct: 278 ARAFQNGEPA------NILSASIDPTDPLATAEGLKAVCHIPLISRNRTVGLLSLARLEP 331 Query: 290 TLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIY 349 FS + + L + +++AIAV NA A+ ++ L++ L QE L +++ S L +I+ Sbjct: 332 VAFSPRDIEFLSLVGNQVAIAVENALAYHEISALKDRLAQEKIYLEDEIRSELNFEEIVG 391 Query: 350 QSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPA 409 +SQA+ +LQ+++ VA +DSTVLI GETGTGKE+IARAIH LS R VK+NCAAIP Sbjct: 392 RSQALRTVLQEIETVAPTDSTVLIYGETGTGKELIARAIHNLSSRSRNSFVKLNCAAIPT 451 Query: 410 SLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIE 469 LLESE+FGH+KGAFTGA+ GRFE+A GT+FLDEIG++PLELQPKLLRVLQERE E Sbjct: 452 GLLESEMFGHEKGAFTGAVAQRIGRFELAHHGTVFLDEIGEIPLELQPKLLRVLQEREFE 511 Query: 470 RLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLA 529 RLG SRT+ + R+IAATNRDL MVEDR FR+DLFYRLNVFP+++P LRDRPEDIPLL Sbjct: 512 RLGSSRTMRTDARLIAATNRDLATMVEDRNFRADLFYRLNVFPVQVPALRDRPEDIPLLV 571 Query: 530 KHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNV 589 +HF Q+ AR M +A+D IPTE + L+ + WPGN+REL+N++ERAV+L+ G L + LN Sbjct: 572 RHFVQQFARRMGKAVDTIPTETMNVLVRYHWPGNIRELQNLLERAVILSAGPVLKVPLND 631 Query: 590 RQSRLLPTLNEDSALRSSMAQLLHPTTPENDE----EERQRIVQVLRETNGIVAGPRGAA 645 Q Q PTT E ER+ I++ L + +++GP+GAA Sbjct: 632 LQ-----------------LQAPAPTTARKTETLESAERRHILEALEAADWVISGPKGAA 674 Query: 646 TRLGMKRTTLLSRMQRLGI 664 LG+KR+TL +RM++LGI Sbjct: 675 EALGLKRSTLQARMEKLGI 693 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/230 (22%), Positives = 105/230 (45%), Gaps = 12/230 (5%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW-CSDL 210 + + L+ ++ A+ +H D +L + RE+H + + D NE LW ++ Sbjct: 22 ERYEALIRVSQAIGAHRDPKELFRAMTRELHRVMQFDGIVIAQYDEASNE--ILWNACEV 79 Query: 211 SASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 + A P +P + + Q ++P + D + R ++ L S G +S + Sbjct: 80 CSQQGAVRPPDIPADETITKWVYQRQEPLVIPALDQETRFPR--MIEFLRSKGFQSICAL 137 Query: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 PLT + G++ +A + +E + L +AD+ A+A+ +A + + Q +LQ++ Sbjct: 138 PLTTVHRRIGSVAVASKRPDAYCKEEVRFLSLVADQAALAIDDALNFETSQVAQAALQRK 197 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 N +L +LL L + + I + + +LL+ ++ S V+ C G Sbjct: 198 NDRL--RLL--LEVNNSIASNLELRELLRA---ISASIRPVMQCDGVGVA 240 >UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP7_9GAMM Length = 766 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/551 (41%), Positives = 322/551 (58%), Gaps = 37/551 (6%) Query: 147 LEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW 206 LE + H+ VLV++T AV+ ++ + L + + FG+ +S++ Sbjct: 226 LEGNSLHNHVLVEVTEAVIGQVNFEGLATVLFLHLQEHFGIEFISIMSFSSDSESLSCHE 285 Query: 207 CSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD-----DLFLWQRDPLLLLLAS 261 + + P + +Q+++ R+D FL D + S Sbjct: 286 VNQGKEGKAQYIESQKPKAKTMEEHVIQSKKTLQLSRSDYPLLKHKFLHVDDHYM----S 341 Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVG---NADAWR 318 + S + PL F G + H + FSEE LL+ IA RI++A+ N+ + Sbjct: 342 HKLSSECVFPLLFRQQVLGVIKYGHRAEKYFSEERLDLLKQIAARISVAINYFQNSSKFM 401 Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 + ++ + + + S+ + G II QS+AM ++ Q+V +VA DSTVLI GETG Sbjct: 402 MKSTPKDLMSVDKTEQSKAMF-----GGIISQSKAMREVFQRVLMVADCDSTVLILGETG 456 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 TGKE+IA IH S R K +VK+NC+A+P+ L ES+LFGH KGAFTGA+N GRFE A Sbjct: 457 TGKEMIANMIHNASNRSHKKMVKMNCSAVPSGLFESDLFGHVKGAFTGAVNQQVGRFEEA 516 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 + FLDEIGD+PL+LQPK+LR LQE EIER+G IPV+VR+IAAT+ DL MV+D Sbjct: 517 HKSSFFLDEIGDMPLQLQPKVLRALQEGEIERVGKHTIIPVDVRMIAATHCDLLSMVKDN 576 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 FR DL+YRLNVFP+ +PPLR+R EDIPLLAKHFTQ ++ MNR I +I E LR L S Sbjct: 577 SFRRDLYYRLNVFPIRIPPLRERREDIPLLAKHFTQLFSKKMNRDIQSISPETLRILYSL 636 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP------------TLNEDSALRS 606 WPGNVREL+NVIERAV++ +G L+L ++ P T E Sbjct: 637 PWPGNVRELKNVIERAVIMNKGQVLHLPMS-ELKEYFPDIDPSPLCVQDGTKKEAGCFPD 695 Query: 607 SMAQLLHPTTPEN-------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 ++ T P+N ER++I++VL+ETNGIVAGP+GAA RLG+KRTTLLSRM Sbjct: 696 TVDLYGENTIPKNVSAVKSVKSMEREQIIKVLKETNGIVAGPKGAAHRLGLKRTTLLSRM 755 Query: 660 QRLGISVREVL 670 QRLGI+ +++ Sbjct: 756 QRLGITSNDLI 766 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 224/560 (40%), Positives = 340/560 (60%), Gaps = 21/560 (3%) Query: 120 FNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAR 179 F +I+ +++ + + L ++++ +VLVD+TN V+S +LI + R Sbjct: 163 FKLFNNMISAMIEHIIEHQTASTFTEKLTTEKNNFQVLVDVTNTVISQSTKKELIGSLLR 222 Query: 180 EIHHFFGLASVSMV-LGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQP 238 ++ F + +S++ L D N+ + + ++ C L+ ++ +P Sbjct: 223 FLYQHFDMTDLSIIQLQDGHYNQHSACFINNEIDYQCHFFTN-----DKLIKNAIKNNKP 277 Query: 239 TLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQ 298 + A D+ Q D S ++A ++PL F G + + + + Sbjct: 278 VFLN-AIDIKKMQADNNSPYFPSR-VKTACVMPLVFRGIAVGYISFMKPIEAPYQNTDLE 335 Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 L + IA R+A+A+ + ++ T Q + N + E + ++ DII QS+ M +L Sbjct: 336 LFKQIAARVALAMHSIKTHQASTPNQPITKFVN--IDEGMGEHVIFDDIISQSEVMNKVL 393 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 +QV +VA DSTVLI GE+GTGKE+IARAIH+LS R +VK+NCAAIPA L ESELFG Sbjct: 394 EQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSKTDMVKMNCAAIPAGLFESELFG 453 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H++GAFTGAI+ GRFE A GTLFLDEIGD+PLELQPKLLR LQE EIER+G + I Sbjct: 454 HERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLRALQENEIERVGKNALIS 513 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 V+VR++ ATN DL + VE+++FR+DL+YRLNVFP+++PPLR+R EDIPLL KHFT+++A+ Sbjct: 514 VDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIPPLRERAEDIPLLVKHFTRELAK 573 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN----VRQSRL 594 M + I AI E L + + WPGNVREL N +ER+V+LTRGN LN+ ++ V S Sbjct: 574 KMGKTITAIAAEDLAVMSVFPWPGNVRELRNFVERSVILTRGNVLNVPVHELKAVSHSAC 633 Query: 595 LPTLNEDSALRSSMAQLLHPTTPENDEE------ERQRIVQVLRETNGIVAGPRGAATRL 648 +PT + + A +++ P + ++ +++ L+ +G+VAGP GAA +L Sbjct: 634 VPT-EKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADVIKALKACHGVVAGPNGAANQL 692 Query: 649 GMKRTTLLSRMQRLGISVRE 668 G+KRTTLLSRMQ++GI+ ++ Sbjct: 693 GLKRTTLLSRMQKMGINSQD 712 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 247/665 (37%), Positives = 380/665 (57%), Gaps = 74/665 (11%) Query: 56 LHVLKSNFYYRYHDDGSDVTATTEYQG--EMVD---------YSRHAVLLGSSGMAELRF 104 LH + S YY D++ YQ ++VD Y + +L+ + + + Sbjct: 95 LHKIASCEYYH------DISGHELYQTFPQLVDHPAYYDVNRYCKIPLLIAGKPLGAIEY 148 Query: 105 I--RTHGSRFTSQDCTLFN-WLARIITPVLQSWL-NDEEQQVALRLLEKDRDHHRVLVDI 160 I + S + + LFN +A +I +++ L +D QQ L ++ + +VLVDI Sbjct: 149 INHKLADSIESERQFKLFNNMIAAMIEHIIEHQLASDFTQQ-----LSNEKKNFQVLVDI 203 Query: 161 TNAVLSHLDLDDLIADVAREIHHFFGLASVSMV-LGDHRKNEKFSLWCSDLSASHCACLP 219 TN V+S +LI+ + ++ F + +S++ L D+ + F ++ + HC Sbjct: 204 TNTVISQSTKKELISSLLHFLYQHFAMTELSIIQLQDNHYMQMFCGLNNNNTEFHCHFF- 262 Query: 220 RCMPGESVLLTQTLQTRQPTLT--HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNH 277 + ++ ++ +P L ++ + + + P + +SA ++P+ F Sbjct: 263 ----NDDKMIKHAIENNKPVLLDHNQLEQIRQDENGPYF----PSKVKSACIVPMVFRGL 314 Query: 278 TPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQ 337 T G + + + + + +L+Q IA R+A+A+ + A ++ E+ Q + + E Sbjct: 315 TIGYICYMKRETLNYQQYDIELVQQIASRVALAMHSIKAHQATLPRTETEQYVS--IEES 372 Query: 338 LLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDK 397 + DII QS+AM +L++V +VA DSTVLI GE+GTGKE+IARAIH++S R Sbjct: 373 YDEHAIFDDIISQSEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAIHKMSLRSKT 432 Query: 398 PLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQP 457 +VK+NCAAIPA L ESELFGH++GAFTGAI+ GRFE A GTLFLDEIGD+PLELQP Sbjct: 433 RMVKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQP 492 Query: 458 KLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPP 517 KLLR LQE EIER+G ++ I V+VR++ ATN DL MV+ +QFR+DL+YRLNVFP+E+PP Sbjct: 493 KLLRALQENEIERVGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRLNVFPIEVPP 552 Query: 518 LRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLL 577 LR R EDIPLL KHF +++A+ M + I AI L + + WPGNVREL N +ER+V+L Sbjct: 553 LRQRAEDIPLLVKHFARQLAQKMGKKITAIAASDLELMQRFSWPGNVRELHNFVERSVIL 612 Query: 578 TRGNSLNL----------HL----------------NVRQSRLLPTLNEDSALRSSMAQ- 610 TRG+ LN+ H+ +++Q++ LP + L SS ++ Sbjct: 613 TRGHVLNIPVDELISLQPHIVQNSRKMESQASLSKTSLKQAQELPQVASIDDLTSSGSES 672 Query: 611 LLHPTTPENDEEERQR-------IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + T +E ++ R I+ L+ G++AGP GAA LG+KRTTLLSRMQ++G Sbjct: 673 VCSVDTAAKNEVKKVRPIVDQSMIINALKRCQGVIAGPNGAANMLGLKRTTLLSRMQKMG 732 Query: 664 ISVRE 668 IS ++ Sbjct: 733 ISSQD 737 >UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Myxococcaceae RepID=A7HFP7_ANADF Length = 674 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 246/580 (42%), Positives = 341/580 (58%), Gaps = 30/580 (5%) Query: 101 ELRFIRTHGS-RFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALR-LLEKDRDHHRVLV 158 E R++R GS + S +L ++ + D +++ LR L+ +R+ R+L+ Sbjct: 107 EERYVRKGGSVMWVSNSVSLVPPRGGSRRILILGLVEDITERMRLRDELDAERNRLRLLL 166 Query: 159 DITNAVLSHLDLDDLIADVAREIH-----HFFGLASVSMVLGDHRK------NEKFSLWC 207 D+ +++HLDL ++ +A + HF GLA G+ R+ + K ++ Sbjct: 167 DVNELLVAHLDLREMFQALASSLRRVTDCHFIGLALPDAATGELRQHIVDHPDGKGAITE 226 Query: 208 SDLSASHCACLPRCM-PGESVLLTQTLQTRQ-PTLTHRADDLFLWQRDPLLLLLASNGCE 265 + H + + G VLL RQ P L + ++ + G Sbjct: 227 GMVLPLHGSASGKAFRTGAPVLLNDPEANRQDPDLYGTPEGARFYR------TVLEEGVP 280 Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 S ++PL G L L + F E + + +A +++IAV NA +R + + +E Sbjct: 281 SGYVLPLVHRGEVLGVLQLKKYADARFKEREIEFMSKVAGQLSIAVANALEYREVKESKE 340 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 L +E L E++ S +II S+ ++ +L Q+D VA +DSTVLI GETGTGKE+IA Sbjct: 341 RLDRERVYLKEEIRSAHDFEEIIGVSRTLKQVLGQIDTVAVTDSTVLILGETGTGKELIA 400 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 RAIH S RRD+P VK+NC+AIP LLESELFGH++GAFTGA GRFE AD GTLFL Sbjct: 401 RAIHNRSRRRDRPFVKVNCSAIPTGLLESELFGHERGAFTGATAPRIGRFEAADQGTLFL 460 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGDLP++LQPKLLRVLQERE ERLG SRT V+VRV+AATNR L MV + +FR DL+ Sbjct: 461 DEIGDLPVDLQPKLLRVLQEREFERLGASRTRRVDVRVVAATNRGLATMVGEGRFREDLY 520 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNVFP+ LPPLR+R DIPLL +HF AR M + ID IP ++R L+ + WPGNVR Sbjct: 521 YRLNVFPITLPPLRERAGDIPLLVRHFVGVYARRMGKQIDHIPDASMRALVGYHWPGNVR 580 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 EL+NVIERAV+LT G L L L R + ED + A H T E ER+ Sbjct: 581 ELQNVIERAVILTPGAVLELALAERAA----GAREDRP--DAAAPNGHRTL---QEVERE 631 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 I+ L+E ++ GP GAA RLG++RT+L+ RM++LGI+ Sbjct: 632 HILGALQEAKWVIGGPNGAAARLGLRRTSLMYRMEKLGIA 671 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/583 (42%), Positives = 330/583 (56%), Gaps = 60/583 (10%) Query: 105 IRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQV------ALRLLEKDRDHHRVLV 158 IR GSRF W +IT L D+++Q+ L E+ R +L Sbjct: 242 IRKDGSRF---------WANVLITA-----LYDQQRQIIGYSKLTRDLTERRRAEEALLA 287 Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSAS----H 214 +++ +VL L + ++ VA + S+ L D KN S S S Sbjct: 288 ELSVSVLPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKNVLHSYILSAAGDSGPEME 347 Query: 215 CACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL-------WQRDPLLLLLASNGCESA 267 + P P +VL H + LFL + +D L L+S G +A Sbjct: 348 LSVAPESSPEAAVL-------------HTHEALFLPSLQDSSFPQDALRHALSS-GIHAA 393 Query: 268 LLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 +PL GAL + + + L +A +IA+ + +A R ++ + L Sbjct: 394 WWLPLVHEGRVAGALCIGVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSAQTQKL 453 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 ++E L E+L + +I+ +++ +L+QV+ VA +D+T LI GETGTGKE+IARA Sbjct: 454 KEEKRYLEEELRTEYSFEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKELIARA 513 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH LS R VK+NC++IP LLESELFGH+KGAFTGAI GR E+A GTLFLDE Sbjct: 514 IHNLSARDGHTFVKVNCSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLDE 573 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IGDLPL+LQPKLLR LQE+EIERLGG RTIPV+ R++AAT+RDL +MV+D QFRSDL+YR Sbjct: 574 IGDLPLDLQPKLLRALQEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYYR 633 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 L VFP+ LPPLR R EDIP L +F K AR MN+ I+ IP + L+ W WPGN+REL Sbjct: 634 LKVFPILLPPLRQRREDIPELVNYFVAKHARRMNKHIEEIPEPVMSALVRWHWPGNIREL 693 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 EN +ERAV+LTRG L L+ Q + T S L ++ ER I Sbjct: 694 ENFLERAVILTRGPLLRAPLSELQELNIETDEPQSTLEAA---------------ERAHI 738 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 +QVLR+ +G++AG GAA RLG+KRTTL SRM++LGI RE L Sbjct: 739 LQVLRDCDGVIAGAGGAAERLGLKRTTLNSRMKKLGIERREYL 781 >UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax=Oxalobacter formigenes RepID=C3X424_OXAFO Length = 540 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/525 (43%), Positives = 309/525 (58%), Gaps = 21/525 (4%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVL---GDHRKNE---KF 203 D D LVD+T+AV++ D+ L A +H FFGL +S+ R N +F Sbjct: 19 DHDFFHFLVDLTDAVIAATDIPCLAEKTADYLHEFFGLDYISLETYEPASFRLNVQAIRF 78 Query: 204 SLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNG 263 L S P + LL L+ ++ L +R L + P + LA +G Sbjct: 79 EQGKRRLYNSFSK------PLHATLLGAALRKQEKILFNRNAILSNAAKYPYVARLAGDG 132 Query: 264 CESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL 323 + L +PL + G L + F+ E LL I+ R+A+A+ + R T Sbjct: 133 LQVLLYLPLVSAGNLLGTLGVGSFKPCHFTPETMALLNRISARLAVALDVMLSHRKKTAP 192 Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 E+ + + +I S A++ +LQQ++IVA S++TVL+ GETGTGK + Sbjct: 193 ASVSPNESPITGDNIEETPPPHHLIGHSVAIQSILQQIEIVASSNATVLLQGETGTGKGL 252 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 IA+ IH LS R+ + +VK+NC AIP+ L+ESELFGH+KGAFTGA+N G FE AD TL Sbjct: 253 IAQTIHNLSDRKARDMVKMNCTAIPSELMESELFGHEKGAFTGALNKRIGHFEQADKSTL 312 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIGD+PL+LQPKLL VLQE +I RLG TI V+VR IAATN DL +ED+ FRSD Sbjct: 313 FLDEIGDMPLDLQPKLLSVLQEHQIRRLGSPHTISVDVRCIAATNCDLVAKIEDKTFRSD 372 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNVFP+ +PPLR+R EDIP LA+ F +K AR MNR I IP+E L + WPGN Sbjct: 373 LFYRLNVFPITVPPLRERAEDIPSLARFFIRKYAREMNRHITGIPSETLALMTRLPWPGN 432 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR---SSMAQLLHPTTPEND 620 +RELENV+ERAV+LT + LN+ LL ++S L SS + P PE D Sbjct: 433 IRELENVMERAVILTSQGGV---LNLSPESLLSYTTQNSPLTVHASSQPVVPVPAIPETD 489 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ++ +V LRET G + G GAA RLG+KRTTLL+R++R GI+ Sbjct: 490 KDT---LVNALRETGGQIGGKTGAAARLGLKRTTLLARLKRFGIN 531 >UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022Z3_SOLUE Length = 705 Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 180/323 (55%), Positives = 242/323 (74%), Gaps = 19/323 (5%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +I+ +S AM +L Q+++VA +++TVLI GETGTGKE++ARA+HQ+SPRRD+P V +NCA Sbjct: 401 EIVGRSAAMNRVLGQIELVAPTNATVLILGETGTGKELVARAVHQMSPRRDRPFVTLNCA 460 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 AIP LLESELFG+++GAFTGA++ GRFE+A+ GTLFLDE+GD+PL+LQPKLLR LQE Sbjct: 461 AIPTGLLESELFGYERGAFTGALSQKIGRFEMANRGTLFLDEVGDIPLDLQPKLLRALQE 520 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 + ERLGG++TIP++VR++AATNR+L QM+ D+ FRSDL+YRL VFP+ PLRD PEDI Sbjct: 521 KSFERLGGTKTIPIDVRLVAATNRNLTQMMGDKLFRSDLYYRLKVFPITTSPLRDHPEDI 580 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 P+LA+HF QK AR M + ID IP +AL+ L+ W WPGNVRELEN IERAV+LT+G+SL Sbjct: 581 PILARHFMQKYAREMGKQIDTIPPDALQALVKWPWPGNVRELENFIERAVILTQGSSLRA 640 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 L + +R A+L +T E ER ++++L ET +++ AA Sbjct: 641 PL--------------AEIRPDAAELPGDSTLEF--VERAHLLKILGETGWVIS---KAA 681 Query: 646 TRLGMKRTTLLSRMQRLGISVRE 668 RLGM RTTL + M +LGIS ++ Sbjct: 682 ARLGMPRTTLNAMMGKLGISRKD 704 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 213/513 (41%), Positives = 305/513 (59%), Gaps = 23/513 (4%) Query: 167 HLDLDDLIADVAREIHHFFGLASVSMVLGD---HRKNEKFSLWCSDLSASHCACLPRCMP 223 H DL L+ D+++ + +S L + H +F A A P +P Sbjct: 12 HTDLAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSADTPTELP 71 Query: 224 GESVLLTQTLQTRQPT-LTHRADDLFLWQRDPLL-LLLASNGCESALLIPLTFGNHTPGA 281 T++P L AD F P+L A G A +PLT GA Sbjct: 72 AGESPTAHVWDTQEPLWLDVTADGRF-----PVLRTAFAKQGVRCACFVPLTTPRRKLGA 126 Query: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSN 341 + + ++ + +A+AV A + + L E L E++ ++ Sbjct: 127 MAFTSYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIRAD 186 Query: 342 LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 + +++ S+ ++++L+QV++VA +DS VL+ GETGTGKE++ARA+H+LS R ++ VK Sbjct: 187 RRMHEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFVK 246 Query: 402 INCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 +NCAAIP LLESELFGH+KGAFTGA+ GRFE+ADGGTLFLDE+GD+P ELQPKLLR Sbjct: 247 LNCAAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLLR 306 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 VLQE+E ERLG ++T+ VNVR++AAT+R+L ++V + +FRSDL+YRL+VFP+ LP LRDR Sbjct: 307 VLQEQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRDR 366 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 EDIP L +HF A+ + I+ IP EA+ L + WPGNVREL+++IERAV+LT G+ Sbjct: 367 REDIPSLVRHFVALFAQRFGKRIETIPAEAMAALERYAWPGNVRELQHLIERAVILTTGS 426 Query: 582 SLNLHLNVRQSRLLPTLNE-DSALRSSMAQLLHPTTPEND--------EEERQRIVQVLR 632 L + L L PT E S R ++A + PT+P E ER I + L Sbjct: 427 ELRVPLG----ELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALD 482 Query: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ++ GP GAA +LG+KRTTLLSRM++LG++ Sbjct: 483 RCGWVIGGPNGAAAQLGLKRTTLLSRMKKLGLT 515 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 350 bits (899), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 184/408 (45%), Positives = 268/408 (65%), Gaps = 13/408 (3%) Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 G +S++ +P+ AL+LA ++ F+ ++ LQ I+ +A+A+ N A+ + Sbjct: 475 GLKSSMYVPIFSKGKPIAALILASKAAYAFTPKDLCTLQDISVELALALENLSAYERIKV 534 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L E L+QE L+E++ ++ +II S +M+ + + VA +D TVLI GETGTGKE Sbjct: 535 LSEHLEQEKTYLAEEIKTSHNFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIMGETGTGKE 594 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 +IARA+H LS RRD+P+VKINCAA+PA L+ESELFGH++G+FTGA G+FE+A+GGT Sbjct: 595 LIARAVHSLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGATEKRIGKFELANGGT 654 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDEIG+LPLELQ KLLR +QE+EIER+GG I +N R+IAATNR+L Q V +FRS Sbjct: 655 LFLDEIGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAAGRFRS 714 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRLNVFP+ +PPLR+R EDI L HF QK+++ + + I I +L+QL+ + WPG Sbjct: 715 DLYYRLNVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITNIANASLQQLLQYPWPG 774 Query: 563 NVRELENVIERAVLLTRGNSLNLH--LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 N+RELE+V+ER+ +L++ +L L L + P + + S S+ D Sbjct: 775 NIRELEHVLERSSILSQSATLTLAEPLRAATTAFPPFVVQSSEEVKSI-----------D 823 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + R I+ L ++ + G GAA L +K TTL +RM++L IS + Sbjct: 824 DAMRLAILAALAKSGNRIRGTGGAAELLNIKPTTLEARMKKLNISAYQ 871 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 350 bits (898), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 194/413 (46%), Positives = 270/413 (65%), Gaps = 22/413 (5%) Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTL-FSEENCQLLQHIADRIAIAVGNA-------DA 316 +S + +P++ G H G L LA S + +E L+ + + A A+ A Sbjct: 154 KSQVSVPISVGGHVFGTLSLATVRSYRSWPDELVPRLRLVGEIFANALVRKQKELQIRKA 213 Query: 317 WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 ++ + +L E L + L E++ N + II QS ++ +L ++ +A +D+TVLI GE Sbjct: 214 FQQIKELNEELAADCTYLREEIDLNYDVHHIIGQSLPLKRVLAKIQQIALTDTTVLILGE 273 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 TGTGKE++ARAIH S RRD+P+VK+NCA++PA+L+ESELFGH+KGAFT A GRFE Sbjct: 274 TGTGKELVARAIHAASQRRDRPMVKVNCASLPANLIESELFGHEKGAFTSAQVRQIGRFE 333 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 AD TLFLDEIG+LPLE Q KLLRVLQE E ERLG SRT+ V+VR++AATNRDL + V Sbjct: 334 FADRNTLFLDEIGELPLESQAKLLRVLQEGEFERLGSSRTLKVDVRIVAATNRDLEEEVR 393 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 +FR DL+YRLN+FP+ +PPLR+R EDIPLL F K R + ++I IP ++ L Sbjct: 394 KGRFRQDLWYRLNIFPITVPPLRERTEDIPLLINLFVNKFGRKLGKSIRRIPAGVMKSLQ 453 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT 616 ++DWPGNVRELENVIERA + T G SL L N++ S + + +A R ++ Sbjct: 454 AYDWPGNVRELENVIERAAINTVGPSLQLLDNLKSSLV---TEKTAAPRLTL-------- 502 Query: 617 PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 +E ER I+QVL +TNG + GP+GAA LG+ +TL +RM++LGI +R + Sbjct: 503 ---EEAERSHILQVLADTNGRIEGPKGAALILGINHSTLRARMRKLGIHIRRI 552 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 187/421 (44%), Positives = 267/421 (63%), Gaps = 20/421 (4%) Query: 252 RDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV 311 R P + + G + + L N G + + F + LL+ I+D++A+AV Sbjct: 663 RHPGIQFIFERGIKEIAGVKLVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAV 722 Query: 312 GN-------ADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 N + + +E L++E L +++ S DII M+ + + V Sbjct: 723 ANILADEKIGQQLKEINGYKEKLEEEKLYLQQEISSVYTHTDIIGAGPEMQRVFHMLSQV 782 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 + + STVLI GETGTGKE+IARAIH SPR++K +VK+NCAA+PA+L+ESELFGH++G+F Sbjct: 783 SFAQSTVLILGETGTGKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSF 842 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGAI G+FE+A+ GTLFLDEIG++PL+LQ KLLR +QEREIER+GG TI +VR+I Sbjct: 843 TGAIERRIGKFELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRII 902 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 AATNR+L + V + +FRSDL+YRLNVFP+ LPPLRDR EDI LLA HF ++ AR R Sbjct: 903 AATNRNLQKEVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKN 962 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL-NLHLNVRQSRLLPTLNEDSA 603 + + A++QL +++WPGNVRELE+V+ER++LLT+GN + +HL+ + E+ Sbjct: 963 IKLSSTAMKQLTAYNWPGNVRELEHVLERSILLTQGNIIREIHLSSQPKSEAKVRQEEDF 1022 Query: 604 LRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 R+ DE ER I+ VL + G + GP GAA LG+ +TL R+++LG Sbjct: 1023 SRTL------------DEMERDYILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLG 1070 Query: 664 I 664 I Sbjct: 1071 I 1071 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 345 bits (884), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 182/341 (53%), Positives = 235/341 (68%), Gaps = 12/341 (3%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Q LQQ+N L E+L + +I+ QS A+ +LQ+V VA +DSTVLI GETGTGKE+ Sbjct: 303 QARLQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKEL 362 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARA+H SPR+ KPL+K+NCAA+P L+ESELFGH+KGAFTGA+ GRFE+ADGGTL Sbjct: 363 VARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELADGGTL 422 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDE+G+L LE Q KLLRVLQERE ER+GG+ + V+VRVIAATNRDL Q+V++ FR+D Sbjct: 423 FLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRAD 482 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L YRLNVFP+ LP LR+RP DIPLL + F K A + + I+ + + L L+ +DWPGN Sbjct: 483 LLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYDWPGN 542 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 +RELENVIERA +L+ G L + +V LP +A + Q L E Sbjct: 543 IRELENVIERAAILSDGPELVIDPDV-----LPVTRGGAAPAGAGGQSLVAV-------E 590 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 I VL +T ++ GP GAAT LG+ TL SRM++LGI Sbjct: 591 ADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 214/525 (40%), Positives = 300/525 (57%), Gaps = 43/525 (8%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGL--ASVSMVLGDHRKNEKFSLWCSDLSAS 213 +L I+ + LDL D++ R + F GL ++S++ +R F L + Sbjct: 39 LLFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISIL---NRDTGGFLL-------A 88 Query: 214 HCACLPRCMPGESVL------LTQTLQTRQPTLTHRADDLFLWQR------DPLLLLLAS 261 LPR +P + L L +T+++R P + DL +W R D L L + Sbjct: 89 EAIGLPRGLPPANYLDMIRPILERTVESRDPVVI---TDLAVWARKQGVEEDVLESLRLA 145 Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 +G + +PL F G L + ++ E + ++L IA +A A A R Sbjct: 146 DGV-GMVSVPLKFDEEAIGTLSIERANTNFGWESDLRILGMIASIVAQA---ARVRRDAA 201 Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 + +SL+ EN +L E++ +II S M + ++ VA S +TVLI GE+GTGK Sbjct: 202 EQIQSLRAENERLQEEIAHGFRPENIIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGK 261 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E++A+A+H+ S RR+KP VK NCAA+P S++ESELFGH+KGAFTGA+ +GRFE A+GG Sbjct: 262 ELVAKALHEKSSRRNKPFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGRFESANGG 321 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 T+FLDEIGD+ L Q KLLRVLQERE ER+G T V+VRVIAAT+R+L +M+E FR Sbjct: 322 TIFLDEIGDISLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEMMEAGTFR 381 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL+YRLNVFP+ +PPLR+R DI +LA HF +K A+ M R I + A+ L+S+ W Sbjct: 382 EDLYYRLNVFPIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDMLVSYHWA 441 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GNVRELEN IERAVLL +G S+ H L PTL + S SS L Sbjct: 442 GNVRELENCIERAVLLAKGQSIKAH------HLPPTLQKKSRAESSEVATLEDAI---QA 492 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 ER+ IV L+ET +A A+ RLG+ R+++ GI V Sbjct: 493 LEREMIVDALKETGSNLA---EASRRLGLTERKAGLRVKKYGIDV 534 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 181/347 (52%), Positives = 236/347 (68%), Gaps = 9/347 (2%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L+ +N L E++ S +I+ S ++ +L+QVD VA +DSTVLICGETGTGKE+IAR Sbjct: 636 LEAQNTYLQEEIRSQHNFVEIVGNSPSLLQVLRQVDRVASTDSTVLICGETGTGKELIAR 695 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH SPRR++PLVK+NC AI L+ESELFGH KGAFTGAI GRFE+ADGGT+FLD Sbjct: 696 AIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKGAFTGAIANREGRFELADGGTIFLD 755 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 E+G+LP E Q KLLRVLQE+E E +G ++T+ V+VRVIAATNRDL MV + +FRSDLFY Sbjct: 756 EVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLETMVREGKFRSDLFY 815 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV PL +PPLR R DIPLL F +K AR + +++ I E + +L + WPGN+RE Sbjct: 816 RLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETMARLCQYPWPGNIRE 875 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRL-----LPTLNEDSALRSSMAQLLHP--TTPEN 619 L+NVIERAV+L+ G+ L + P + A+ + L P T N Sbjct: 876 LQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPERAMIDAAEPLSTPLGATSGN 935 Query: 620 --DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ++ ERQ I VL++TN + G GAA L ++ +TL SRMQ+LGI Sbjct: 936 ALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPSTLRSRMQKLGI 982 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 176/372 (47%), Positives = 247/372 (66%), Gaps = 16/372 (4%) Query: 294 EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 E +C ++ + A + L+ L+ EN L ++ + +I+ + Sbjct: 112 EYSCSFIKDMTQHFQTQEALRRALDEVQTLKNRLEAENVYLMNEIKLSNNFDEIVTGNPI 171 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 LQ V+ VA +D++VLI GETG GKE+IARAIH LS RRD+PL+++NCAA+PA+L+E Sbjct: 172 FMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATLME 231 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 +ELFGH++GAFTGA GRF++ADGGTLFLDE+GDLP+ELQ KLLRVLQE E ERLGG Sbjct: 232 NELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGG 291 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 + TI V+VR++AAT+ DL ++ + +FRSDL+YRLNVFP++ PPLR+R EDIPLL +HF Sbjct: 292 AETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFV 351 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 + ++I+ IP + L + WPGN+REL+NVIERAV+++RGN L + Sbjct: 352 KASCEKNGKSIELIPRHVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEI-------- 403 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 DS + +A P +P + ER+ I++ L T V GP+GAA LG+KRT Sbjct: 404 -------DSLPKMVIAADAAPISP-LEVTEREHIIRALETTAWRVGGPKGAAEILGLKRT 455 Query: 654 TLLSRMQRLGIS 665 TL +RM++LGI+ Sbjct: 456 TLQARMRKLGIN 467 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 175/342 (51%), Positives = 237/342 (69%), Gaps = 15/342 (4%) Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L++ LQ EN L E++ +I+ QS+A + +L+ V+ VA +++TVLI GE+GTGKE Sbjct: 158 LKDQLQAENTYLREEIKQTKNFDEIVTQSKAFQKVLRSVEQVAPTNTTVLILGESGTGKE 217 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 ++ARA+H LS R++KPLVKINCAA+PA+L+ESELFGH+KGAFTGA GRFE+ADGGT Sbjct: 218 LLARAVHNLSSRKNKPLVKINCAALPATLIESELFGHEKGAFTGATAQKVGRFELADGGT 277 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEIG++PL+LQ KLLRVLQE E ER+G ++T+ VNVRVIAATNRDL + +FR Sbjct: 278 IFLDEIGEMPLDLQAKLLRVLQEGEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFRE 337 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRL+VFP+ PLR R EDIPLL +HF K M + ID IP L L + WPG Sbjct: 338 DLYYRLSVFPIVSLPLRTRKEDIPLLVRHFCAKHGADMGKTIDTIPATVLDTLTDYHWPG 397 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 N+RELEN+++RA++++ G +L + +R+ P N+ + L + +E Sbjct: 398 NIRELENLVQRALIMSPGRTLVIGDWLRKK---PLANQKATLMTM------------EEA 442 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ER I+ VL T+ V+G GAA L M TTL SRM++LGI Sbjct: 443 ERAHIISVLELTHWKVSGDNGAARLLDMIPTTLDSRMKKLGI 484 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 188/410 (45%), Positives = 256/410 (62%), Gaps = 19/410 (4%) Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSM-T 321 G + + + G G L L FSE + +L I + + I + N A ++ Sbjct: 130 GVVEMMAVKICNGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNILANETIEK 189 Query: 322 DLQE------SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 LQE LQ ENH L EQ DI+ S M+ + + VA S+STVL+ G Sbjct: 190 QLQEIERFRQKLQNENHYLQEQQGLQNTFADIVGTSAEMQRRITILSRVAPSESTVLLLG 249 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 ETGTGKEV ARAIH SPRRD ++K+NCAA+P L+ESELFGH+KG+FTGA G+F Sbjct: 250 ETGTGKEVFARAIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTGATQRRIGKF 309 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E+AD TLFLDEIG+LPLE Q KLLRVLQE+EIER+GG +I VNVR++AATNR+L + V Sbjct: 310 ELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAATNRNLEEEV 369 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 +FRSDL+YRL+VFP+ +PPLR+R EDIP LA HF Q+ A + R +I +A+ L Sbjct: 370 RAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPSISAKAMEGL 429 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 M ++WPGNVRELE+++ER +LLT + +++ + + + DS + Sbjct: 430 MHYEWPGNVRELEHLMERTLLLTT-TPVIAKIDLPGVPVTASKDPDSTFILPL------- 481 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 D E++ I++VL+ NG +AGP GAA +L + TTL SRM++LGI Sbjct: 482 ----DLMEKEYILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKKLGIK 527 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 199/543 (36%), Positives = 310/543 (57%), Gaps = 26/543 (4%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLAS-VSMVLGDHRK 199 ++ R++ K+++ VL+ ++NA+ + + DL + +++ F V ++ + +K Sbjct: 21 EINERIIRKEQES-AVLLSLSNAIATIRNKYDLFEVIDQKLKTLFDFDEFVICLINEDKK 79 Query: 200 NEKFSLWCSDLSASHCACLPRCMPGESVL---LTQTLQTRQPTLTHRADDLFLWQRDPLL 256 L+ + A +P L L + + + +++ W P+ Sbjct: 80 THSPFLYNQREDFRNAAGIPPASTKRYSLDDGLCEAMLASAHPIVFEVEEVMQWPDPPIW 139 Query: 257 LLLASN-GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNAD 315 L N G + + + + G L S S + LL I+ +I++AV N Sbjct: 140 LGFWQNKGIREMIGMKIFDRDECSGFFYLYAKKSNAVSNQYYSLLHSISLQISVAVSNIR 199 Query: 316 A-------WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 A + + ++ L+ E L EQ+ + +++ QS A+ + ++ VA SD Sbjct: 200 ANEKIEEQLQQINTYKQQLEDEKSYLQEQINTRYHHSEMVGQSSAIRQVFDLIEQVAASD 259 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 STVLI GETGTGKE++AR+IH LSPR+DK ++K+NCAA+PA+L+ESELFGH+KG+FTGA Sbjct: 260 STVLILGETGTGKELVARSIHNLSPRKDKLMIKVNCAALPANLVESELFGHEKGSFTGAS 319 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 G+FE+A GTLFLDEIG+L ++Q KLLR LQE+EIER+GG I NVR+IAATN Sbjct: 320 ERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIERIGGKGVIKTNVRIIAATN 379 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 R+L + VE+ FRSDL+YRLNVFP+ +PPLR+R EDI L+ HF Q +A+ R + + Sbjct: 380 RNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSAHFIQHLAKKTGRQVKGMT 439 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN-LHLNVRQSRLLPTLNEDSALRSS 607 L+ L + WPGN+RELE++IER++LL+RGN +N +H LP + L +S Sbjct: 440 KGVLKTLQEYPWPGNIRELEHLIERSILLSRGNIINEVH--------LPKVEHMEDL-TS 490 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 ++ T EN ER I+ +L+ G ++G GAA L + TTL S++++ I Sbjct: 491 NKEIRIKTIFEN---ERDHILNILKLCKGKISGNGGAAELLSIPATTLNSKIKKFNIKKE 547 Query: 668 EVL 670 V+ Sbjct: 548 HVI 550 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 183/428 (42%), Positives = 266/428 (62%), Gaps = 38/428 (8%) Query: 259 LASNGCESALLIPLTFGNHTP-GALLLAHTSSTL--FSEENCQLLQHIADRIAIAVGN-- 313 L NG +S L+ + H P G L H + ++ E+ + +A+ +++ V + Sbjct: 376 LKPNGIKS-LMDVFVYSAHQPYGILCFEHVGPGIRSWTAEDLEFASSMANVVSLMVESNE 434 Query: 314 ---------------ADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 + A + + L+ L+QEN L +L +++Y SQA+ +L Sbjct: 435 RKKAEEQIRQANLELSKANKELDTLRNRLEQENMYLRNELDLAFNYQEMVYSSQAISQVL 494 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 +V+ VA +++TVL+ GE+GTGKE++ARAIH +SPR KP++K+NCAAIP LLESELFG Sbjct: 495 TEVEQVAATNATVLLQGESGTGKELLARAIHNISPRSGKPMIKVNCAAIPGELLESELFG 554 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H KGAFTGA++ G+FE+ADGGTLFLDEIG+LPLE+QPKLLR LQE EIE +GG+ Sbjct: 555 HKKGAFTGAVSNKVGKFELADGGTLFLDEIGELPLEMQPKLLRFLQEGEIEVVGGTEVRK 614 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 ++VR+IAATNR L + VE FR DL++R+NVFP+E+PPLR+R EDIP+L +HF K R Sbjct: 615 LDVRIIAATNRYLKEEVEKGDFREDLYFRINVFPIEVPPLRERKEDIPILVEHFMDKFNR 674 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR--LLP 596 + I + EA+ QL ++WPGN+RELEN++ERA +++RG +L + QS+ +P Sbjct: 675 KYGKNISFVTEEAMSQLKQYEWPGNIRELENLLERATIVSRGETLIIPGFESQSQKSKMP 734 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 N + +L + +R I+ VL + + G GAA L M+ +TL Sbjct: 735 LRNNNLSLTTV---------------QRNHILHVLDMCDWKITGQGGAAELLDMRPSTLR 779 Query: 657 SRMQRLGI 664 RMQ+LGI Sbjct: 780 DRMQKLGI 787 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 183/376 (48%), Positives = 254/376 (67%), Gaps = 1/376 (0%) Query: 291 LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQ 350 + EE L+ IAD A A+ A A+ + L++ L+ EN L E++ + G++I Q Sbjct: 166 IIGEECMGWLRMIADHAAAAIVTARAFAEIESLRKRLELENEYLREEVTGSGAFGELIGQ 225 Query: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 S A+ + QQ+D+VA +DS+VLI GE+GTGKE++AR IH+ S R ++PL+K+NCAA+P Sbjct: 226 SPALGTVSQQIDLVAPTDSSVLILGESGTGKELVAREIHRRSRRSNRPLIKVNCAAVPRE 285 Query: 411 LLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIER 470 L ESE FGH KGAFTGA+ GRFE+ADGGTLFLDE+G++PLELQ KLLRVLQE E+ER Sbjct: 286 LYESEFFGHAKGAFTGALRDRVGRFELADGGTLFLDEVGEIPLELQAKLLRVLQEGELER 345 Query: 471 LGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAK 530 +G RT VNVR+IAATNRDL E +FR DL+YRL+VFP+E+PPLR R ED+PLLA Sbjct: 346 VGEERTRKVNVRIIAATNRDLRMEAEAGRFRQDLYYRLSVFPVEVPPLRRRKEDVPLLAS 405 Query: 531 HFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHL-NV 589 HF + AR + R + +++L +DWPGNVREL++VIERAV+ + L + L Sbjct: 406 HFLRIAARKVGRPQPLLTLAIVQKLQQYDWPGNVRELQHVIERAVITSTNERLLIELPQT 465 Query: 590 RQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLG 649 S+ ++ S ++ ++ T E + E + I+ L+ T+G ++GP GAA LG Sbjct: 466 TGSKPTRSVKSPSNSTATSQEIPIRTDLEIRQMEAENILAALQATHGKISGPGGAAALLG 525 Query: 650 MKRTTLLSRMQRLGIS 665 +K TTL SR++ LGI Sbjct: 526 LKPTTLASRIKALGIK 541 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 334 bits (857), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 178/380 (46%), Positives = 250/380 (65%), Gaps = 30/380 (7%) Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 +LQ I +I+ AV N A + LQ+ L+ ENH L +QL N +I+ +AM+ + Sbjct: 334 ILQGICAQISTAVSNVLANEQILRLQKQLEDENHYLKQQL--NKDFEEIVGGGEAMQQVY 391 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 + + +VA+S++TVL+ GETGTGKE+IA+A+H S R+DK ++K+NCAA+PASL+ESELFG Sbjct: 392 RLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLMIKVNCAAMPASLIESELFG 451 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H++GAFTGA+ G+FE+A+ TLFLDE+G++P+E Q KLLRVLQE+E+ER+GG TI Sbjct: 452 HERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEKEMERVGGKTTIK 511 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 +NVR+IAATNRDL V+ +FRSDL+YRLNVFP+ LPPLRDR EDI LA F K ++ Sbjct: 512 LNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIESLAGFFLAKFSK 571 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTL 598 + + + ALRQL ++ WPGNVRELE++IER+V+L P + Sbjct: 572 SIGKKTVKLSANALRQLQAYLWPGNVRELEHLIERSVILATD---------------PMI 616 Query: 599 NEDSALRSSMAQLLHPTTPEN--------DEEERQRIVQVLRETNGIVAGPRGAATRLGM 650 E + Q TT E+ ++ ER I+QVLR G ++G GAA LG+ Sbjct: 617 RE-----FFLPQATGATTDEHTMQSDLTLEQVERMHIIQVLRRCGGKISGIGGAAEILGI 671 Query: 651 KRTTLLSRMQRLGISVREVL 670 T+ S+M++LGI+ E Sbjct: 672 PGNTIHSKMRKLGITKAEYF 691 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 331 bits (848), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 205/512 (40%), Positives = 298/512 (58%), Gaps = 23/512 (4%) Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN--EKFSLWCSDLSASHCA 216 ++T + S L++ + + FF L +S+ + D + + + +D + +H Sbjct: 10 EVTVRICSSLEIKTALRSAFTYLREFFPLDMLSLGICDASLSAIRRVAHVTADSTETHDE 69 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN 276 +P +PG+ Q + R P + + P L L ++G +L+PL G Sbjct: 70 IIP--VPGQLWASLQRWEMRSPVMVDSDQSGLVRALAPHLKLDENSG----ILLPLWSGE 123 Query: 277 HTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSE 336 G L L + F + LL +AD IA+ NA A + +++L +N LS+ Sbjct: 124 GMLGWLTLYAWGAGRFDAGHVALLATVADPFVIALANALAHEKLLRYRDNLIDDNRFLSK 183 Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 +L + G +I+ + + +++ V VA ++TVL+ GETGTGKE+IA AIH SPR+D Sbjct: 184 ELFTQ-GGDEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANAIHSASPRKD 242 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 PL+K+NC AIP L++SELFGH+KGAFTGA+ RGRFE ADGGT+FLDEIG+LPL+ Q Sbjct: 243 GPLIKVNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDEIGELPLQAQ 302 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 +LLRVLQ EI+R+GGSR IPV++RVIAAT+R+L M+ + +FR DL++RLNVFPL +P Sbjct: 303 VRLLRVLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFRLNVFPLFIP 362 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PLR R EDIP L +HF + R + A+ I AL +LM + WPGNVRELEN++ER + Sbjct: 363 PLRQRREDIPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAWPGNVRELENLVEREL 422 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN---DEEERQRIVQVLR 632 +L RG +L L+P +A Q P E D+ + + +VL Sbjct: 423 ILHRGGTLQF------DALMPAARRGNA----PVQREAPGVEEGLELDQAISRHLRRVLD 472 Query: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 T G + G GAA LG+K +TL R+ RLGI Sbjct: 473 LTGGRIHGRGGAAELLGVKPSTLRWRLDRLGI 504 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 173/347 (49%), Positives = 232/347 (66%), Gaps = 3/347 (0%) Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 S Q+SL+ EN L +++ S G II S A++ +LQQ+++VA + + VLI GE+G Sbjct: 153 SCIQTQKSLELENEYLLDEIRSER-FGAIIASSPALKKVLQQIEVVAPTQANVLILGESG 211 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 TGKE++ARAIH LS R+ KPLV++NCA+IP L ESE FGH +GAFTGAI GRFE+A Sbjct: 212 TGKELVARAIHDLSERKGKPLVRVNCASIPKELFESEFFGHVRGAFTGAIKDRVGRFELA 271 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 +GG+LFLDEIG++PL+LQ KLLRVLQE + ER+G RT VNVR+IAATNRDL + Sbjct: 272 NGGSLFLDEIGEIPLDLQSKLLRVLQEGQFERVGEDRTRTVNVRIIAATNRDLLTEAKAG 331 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 +FR DL+YRL+VFP+E+P LR+RPEDI LA+HF ++ A + + +R+L + Sbjct: 332 RFRLDLYYRLSVFPIEIPALRERPEDIGPLAEHFVKQSANRLGVTRPRLTKADVRELEGY 391 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE 618 DWPGNVREL+NV+ERAV+L R L L R P A S+ P+ E Sbjct: 392 DWPGNVRELQNVVERAVILARSGRLKFELGNNSERPFPPSARVPAPDGSIDH--QPSLGE 449 Query: 619 NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ++E+Q I+ L++ G + G GAA L MK TTL SR+QR G+ Sbjct: 450 LKQQEKQVILNALKQAQGRIYGEEGAAAILSMKPTTLASRIQRYGLK 496 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 171/346 (49%), Positives = 236/346 (68%), Gaps = 16/346 (4%) Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 + L++ L+ E L E++ II QS ++ +L +++ +A SD+TVL+ GETGT Sbjct: 175 IKKLKQQLEAERAYLQEEIKLEYNHEHIIGQSDGLKYVLYKIEQIADSDTTVLVLGETGT 234 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE++ARAIH LS R+++ ++K+NCAA+P +L+ESELFGH+KGAFTGA H GRFE+A+ Sbjct: 235 GKELVARAIHNLSRRKNRTMLKVNCAALPTNLIESELFGHEKGAFTGAHARHTGRFEVAN 294 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 G TLFLDEIG+LPLELQPKLLRVLQ+ E ERLG S + V+ R+IAATNR+L + V + Sbjct: 295 GTTLFLDEIGELPLELQPKLLRVLQDGEFERLGSSHSTKVDARIIAATNRNLEEEVRNGN 354 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR DL+YRLNVFP+ +PPLRDR +DIPLL + + +K++R M + I+ IP++ + L ++ Sbjct: 355 FREDLWYRLNVFPITMPPLRDRLDDIPLLVEFYVKKISRRMGKTIETIPSKIMETLQAYP 414 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN 619 WPGNVRELENV+ERAV+ + G L RL+ L SS + L Sbjct: 415 WPGNVRELENVLERAVINSSGTKL---------RLVDELKRPFRGLSSSEKTLAAV---- 461 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ER IV+VL +T V G AA LG+ R+TL +RM++L IS Sbjct: 462 ---ERDHIVRVLEQTQWKVGGKNSAAEILGLDRSTLRARMRKLNIS 504 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 328 bits (840), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 175/345 (50%), Positives = 232/345 (67%), Gaps = 18/345 (5%) Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L+E LQ E L +++ + II QS A++ +L+ V+ VA +DSTVLICGETGTGKE Sbjct: 392 LKEKLQLEAEYLQTEIICSHCNEQIIGQSAALDKVLRLVEQVASTDSTVLICGETGTGKE 451 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 ++ARAI +LS RR+KP+VK+NCA++PA+L+ESELFG +KGA+TGA+ GRFE+ADG T Sbjct: 452 LVARAIQELSLRRNKPIVKVNCASLPAALVESELFGREKGAYTGALTRQAGRFEVADGAT 511 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEI ++ ELQ KLLRVLQE + ERLG ++TI V+VRVIAATNR+L + V+ FR Sbjct: 512 IFLDEISEMSPELQAKLLRVLQEGQFERLGSTKTIHVDVRVIAATNRNLAEEVKKGTFRE 571 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRLNVF + +PPLR+R EDIPLLA F + M + I+ I + L ++ WPG Sbjct: 572 DLYYRLNVFQIVVPPLRERAEDIPLLAWAFVHEFNEKMGKKINRIAKSDMNALQNYHWPG 631 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 NVREL NVIE V+++ GN L++ L S ++ P DE Sbjct: 632 NVRELRNVIEYGVIVSTGNGLHVRLP----------------EGSGEEIARPLL--MDEV 673 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 ERQ I VL+ T + G GAA LGM +TL SRMQ+LGI+VR Sbjct: 674 ERQHITGVLQRTGWRIKGENGAARILGMNPSTLYSRMQKLGIAVR 718 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 327 bits (839), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 174/362 (48%), Positives = 245/362 (67%), Gaps = 35/362 (9%) Query: 323 LQESLQQENHQLSEQLLSNLGIGD-----------IIYQSQAMEDLLQQVDIVAKSDSTV 371 L E +QQ+N LS ++++ + I+ +S +L +++V+ + S+V Sbjct: 301 LLEQIQQKNDALSARIVARKRVEKPLIDNEVLFEGIVGRSPVFLSVLHSINMVSAAPSSV 360 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 LI GE+GTGKE+IAR IH+ SPR++KPL+ +NCAA+PA L+ESELFGH+KGAFTGA + Sbjct: 361 LILGESGTGKELIARCIHRQSPRKNKPLITVNCAALPAELIESELFGHEKGAFTGATDKR 420 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 G+FE+ADGGT+FLDEIG+LP+E Q KLLRVLQE+E ER+GGS+ I V+VRVIAATNR+L Sbjct: 421 AGKFEMADGGTIFLDEIGELPIESQVKLLRVLQEKEFERVGGSKVIKVDVRVIAATNRNL 480 Query: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 + V + +FR DL+YRLNVFP+ELP LR+R EDIPLLA+HF K++ ++R I I +A Sbjct: 481 EKEVAEGRFRLDLYYRLNVFPVELPSLRERKEDIPLLAQHFVDKLSEKLSRNITDISPDA 540 Query: 552 LRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQL 611 L+ L S+DWPGN+RE+E+V+ER++L+T G L + +LP + AQ Sbjct: 541 LKALRSYDWPGNIREMEHVMERSLLMTTGTIL-------KQIMLPKM---------AAQP 584 Query: 612 LHPTTPEND--------EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + T D E E + I+QVL+ G V G GAA LG+ +TL S++++LG Sbjct: 585 VGTTISSADGNRIKTLEEMEIEHILQVLKSCKGKVCGVGGAAELLGLPPSTLNSKIRKLG 644 Query: 664 IS 665 I Sbjct: 645 IK 646 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 327 bits (838), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 176/348 (50%), Positives = 234/348 (67%), Gaps = 18/348 (5%) Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L+E L+ EN L E++ + II +S+A++ +L+QVD+VA +D+TVLI GE+GTGKE Sbjct: 351 LRERLEMENAYLQEEIRAETSHRGIIGRSEAIKKVLRQVDLVAPTDATVLITGESGTGKE 410 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 +IARAIH S RR++PL+++NCAAIP L ESE FGH +GAFTGA+ GRFE+AD GT Sbjct: 411 LIARAIHDASERRERPLIRVNCAAIPRELFESEFFGHVRGAFTGALRDRVGRFELADRGT 470 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDE+G++PLELQ KLLRVLQE + ER+G RT V+VR+IAATNRDL V +FR Sbjct: 471 LFLDEVGEIPLELQSKLLRVLQEGQFERIGEERTRQVDVRIIAATNRDLKAAVRAGRFRE 530 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DLFYRL+V P+E PLR+R EDIPLLA HF + R + +R+L ++DWPG Sbjct: 531 DLFYRLDVMPIESVPLRERREDIPLLAAHFLDGVRRKPADGPLQLSAGDMRRLQTYDWPG 590 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 NVREL+NVIER ++L R L++ L R++ + AQ + P+ E Sbjct: 591 NVRELQNVIERGIILARNGRLHIDLPDREA-------------PATAQPVPPSAELETEA 637 Query: 623 ERQ-----RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 +R+ I+ L G V+GP GAA RLG+K TTL SRM+ LGI+ Sbjct: 638 DRRLRLRTSILAALEAAGGKVSGPGGAAERLGLKPTTLASRMKTLGIT 685 >UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Proteobacteria RepID=A0YEC8_9GAMM Length = 639 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 172/356 (48%), Positives = 241/356 (67%), Gaps = 3/356 (0%) Query: 315 DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 +A + L++ L+ EN L E++ S II S ++++LQQ+D+VA + +TVLI Sbjct: 272 EALAEVESLKDRLEMENAYLQEEIKSKFNHHRIIGSSAPLQNILQQIDLVAPTKATVLIT 331 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GE+GTGKE++ARAIH+ S R + L+++NCAAIP L ESE FGH KGAFTGA + GR Sbjct: 332 GESGTGKELLARAIHESSGRSGRSLIRVNCAAIPQDLFESEFFGHVKGAFTGASSDRPGR 391 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 FE+ADGG++FLDE+G++PL LQ KLLRVLQE+E ER+G + T V+VR+I ATNRDL QM Sbjct: 392 FELADGGSIFLDEVGEIPLHLQGKLLRVLQEQEFERVGEAITRTVDVRIITATNRDLKQM 451 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 V + FR DL++RLN+FP+E PLR R +DIP L +HF + A N++ IP + + Sbjct: 452 VAEGLFREDLYFRLNIFPIESIPLRQRKDDIPQLTQHFLGQAAIRANKSDLRIPLHEIEK 511 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 L ++DWPGNVRELENVIER V+L RGN + + N+ S + A + + ++L Sbjct: 512 LKAYDWPGNVRELENVIERQVILIRGNIVRFN-NLLSSDNNAIIEGAGADKDNKYEIL-- 568 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 T P+ + E+Q I++ L G V G GAA L +K TTL SR+++LGI+ R+ L Sbjct: 569 TEPQLRQMEKQNIIRALHYCKGRVFGDGGAADLLSIKPTTLSSRIKKLGINTRDSL 624 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/347 (48%), Positives = 238/347 (68%), Gaps = 12/347 (3%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Q L+++N L E+ DII S M+ + Q + V+ ++STVL+ GETGTGKE+ Sbjct: 141 QSQLEEQNAYLLEEAKEGFSYDDIIGSSGPMQRVFQLLSQVSFTNSTVLLLGETGTGKEL 200 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARAIH S R+D+ +V++NCAAIPA L+ESELFGH+KG+FTGA G+FE+A+ TL Sbjct: 201 VARAIHNSSARKDRLMVRVNCAAIPAHLIESELFGHEKGSFTGAFERRIGKFELANQATL 260 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG++PL++Q KLLR +QEREIER+GG I V+VR+IAATNR+L + V+ +FRSD Sbjct: 261 FLDEIGEMPLDMQAKLLRAIQEREIERIGGKGVIKVDVRIIAATNRNLLEEVQQGRFRSD 320 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRL+VFP+ LPPLR+R DI LLAK F + A++ ++I I + ++ L+++ WPGN Sbjct: 321 LFYRLHVFPITLPPLRERTGDISLLAKQFVGRFAKNNGKSISRISSNVMKALLAYPWPGN 380 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VRELE+ +ER VLL R +V + LLP S +S A T ++E E Sbjct: 381 VRELEHQMERCVLLARD-------HVIRDVLLP-----SPTQSGHAPAAGIYTKTHEENE 428 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 R+ I++VL + NG + GP GAA L +K TL S++++LGIS +++ Sbjct: 429 REYIIRVLNQCNGKIYGPGGAAQLLNLKVGTLNSKIKKLGISKEQII 475 >UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Bacteria RepID=A4SC79_PROVI Length = 704 Score = 325 bits (834), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 186/396 (46%), Positives = 253/396 (63%), Gaps = 11/396 (2%) Query: 275 GNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 G+H A L+ +S F E L I ++++A+ N A+ + L++ L+ E L Sbjct: 314 GSH---AGLIISSSRRPFEEAELATLNLIIPQLSLALQNLLAFDEIDTLRQRLEGERTYL 370 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 E++ + +II S + +L++V VA +D+TVLI GETGTGKE+ ARAIH LSPR Sbjct: 371 KEEIRAVHNFEEIIGTSAPLAAVLRRVSQVAPTDATVLIQGETGTGKELFARAIHTLSPR 430 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 ++ LV++NCAA+PA+L+ESELFGH+KG+FTGA G+FE+ADGGT+FLDEIG+LPLE Sbjct: 431 NERVLVRVNCAALPATLIESELFGHEKGSFTGATGRRIGKFELADGGTIFLDEIGELPLE 490 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 LQ K+LRVLQEREIERLGG + IPVNVRVIAA+NRDL + V +FR+DLF+RLN FP+ Sbjct: 491 LQSKMLRVLQEREIERLGGGKLIPVNVRVIAASNRDLQKEVAAGRFRADLFFRLNAFPIF 550 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 LPPLR R DI +LA HF QK AR R I +++L W GN+REL + IE+A Sbjct: 551 LPPLRARTGDISMLALHFAQKFAREFGRPNRPIRERDMQELKERQWKGNIRELAHAIEQA 610 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT---PENDEEERQRIVQVL 631 V+LT G L+ + L P +AL S A+ + E E ER I+ L Sbjct: 611 VILTDGPVLDF-----STILTPRSRHLAALSPSPAKGIQSMAIFEEEVREMERTLILDAL 665 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + G V+G GAA L + TL +R+++LG+ R Sbjct: 666 DQAKGRVSGKGGAAELLSIHPKTLYTRIEKLGLRKR 701 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 323 bits (829), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 172/374 (45%), Positives = 239/374 (63%), Gaps = 13/374 (3%) Query: 292 FSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQS 351 ++ N QL I +R D + + L++ LQ EN L +++ +II S Sbjct: 154 LTKTNLQLGLEIEERKKAEASLRDTYTQIKQLKDKLQAENTYLQKEVARQFNFDEIIGSS 213 Query: 352 QAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASL 411 + + + Q+V+ VA +TVL+ GETGTGK V+ARAIH S R+ +PL+ ++C +P +L Sbjct: 214 KLLSQVFQKVEQVAPMHATVLLLGETGTGKGVVARAIHSRSSRKKRPLITVDCTTLPVAL 273 Query: 412 LESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERL 471 +ESELFG ++GAFTG+ + GRFE+ADGGTLFLDEIG++PLE+Q KLLRV+Q+ E ERL Sbjct: 274 IESELFGRERGAFTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRVIQDGEFERL 333 Query: 472 GGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKH 531 G RTI V+VR+IAATNR+L + V + +FR DL+YRLNVFP+ LPPLR R EDI LL H Sbjct: 334 GSPRTIKVDVRIIAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRKEDISLLVNH 393 Query: 532 FTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQ 591 F K + + + ID I +AL L WPGNVRELE+ IERAV+L+ G SL + Sbjct: 394 FLIKFNKKIGKQIDIITQDALNTLQQHQWPGNVRELESAIERAVILSEGKSLQILDRFES 453 Query: 592 SRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMK 651 L T+ E SM L+ E E + IV+VL++T + G +GAA LG+ Sbjct: 454 FDKLATIEE-----PSMKALV--------ELEYEHIVKVLQQTGWRIEGNKGAALILGLN 500 Query: 652 RTTLLSRMQRLGIS 665 +TL +RM++ GI+ Sbjct: 501 PSTLRARMRKQGIT 514 >UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1I6_9PLAN Length = 539 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 182/371 (49%), Positives = 247/371 (66%), Gaps = 7/371 (1%) Query: 295 ENC-QLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 E+C + L+ IAD +A A+ NA A + L++ L+QEN L E++ GD+I QS + Sbjct: 171 ESCFEWLRMIADHLAAAIANARALDEIDSLKKRLEQENEYLREEVQQITSFGDLIGQSPS 230 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 ++ +Q+++VA +DS VLI GE+GTGKEV+AR +H+ S R D+PL+K+NCAAIP L E Sbjct: 231 LQATTRQIELVAPTDSAVLILGESGTGKEVVARELHRRSRRADRPLIKVNCAAIPRELYE 290 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 SE FGH KG+FTGA+ GRFE+AD GTLFLDEIG++PL+LQ KLLRVLQE E+ER+G Sbjct: 291 SEFFGHAKGSFTGALRDRAGRFELADRGTLFLDEIGEIPLDLQAKLLRVLQEGELERIGE 350 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 RT ++VR+IAATNR+L E +FR DLFYRL+VFP+ELPPLR R EDIPLLA+H+ Sbjct: 351 ERTRRIDVRIIAATNRNLRTEAEAGRFRQDLFYRLSVFPMELPPLRKRVEDIPLLAEHYL 410 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 + +R + R + ++ L + WPGNVREL++V+ERA ++ L Q + Sbjct: 411 DRFSRQLGRPRPRLTLAHVQDLQRYPWPGNVRELQHVLERACIVATDGKLQFDFPKDQLK 470 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 E+ A SS +L T E E E I + L +NG + G GAA+RL MK T Sbjct: 471 ----RREEPAEPSSPQHIL--TAAELRELEASNIRKALAASNGKIYGKNGAASRLAMKPT 524 Query: 654 TLLSRMQRLGI 664 TL SR++ LGI Sbjct: 525 TLASRIKALGI 535 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 187/512 (36%), Positives = 303/512 (59%), Gaps = 23/512 (4%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE-KFSLWCSDLSA--- 212 L+++TNA+ S D+D L +A +I + L + + + +F ++++ Sbjct: 11 LLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYAVITNMATPAL 70 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 +H + +PR G +V + + + +FL R G + +PL Sbjct: 71 AHDSVIPR--EGSAVGWVHDNRRLHIREDLQKEQVFLEDR-----YYVQEGLGRMINMPL 123 Query: 273 TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH 332 +H G L + + +++C+ LQ +A +IA A+ + A+ + L + L++EN Sbjct: 124 LVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDRLRRENE 183 Query: 333 QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLS 392 L+E++ ++ + ++ S + ++ + VA +D+TVL+ GETGTGKEV+A+A+H LS Sbjct: 184 YLAEEVKASRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQALHDLS 243 Query: 393 PRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLP 452 R KP +++NCAA+P+ L+ESELFGH++GAFTGA GRFE+A GTLFLDEIG++P Sbjct: 244 LRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLDEIGEMP 303 Query: 453 LELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFP 512 LE Q KLLRVLQ+ ++R+GG++ + V+VR++AATN DL V FR+DLFYRL++FP Sbjct: 304 LETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADLFYRLHIFP 363 Query: 513 LELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIE 572 + LPPLRDR EDI LLA+HF + + RA A +++ +L++++WPGNVREL+NVIE Sbjct: 364 IALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPGNVRELQNVIE 423 Query: 573 RAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLR 632 RAV+L+ + + + LLP + ++ + ER I++VL Sbjct: 424 RAVILSGSSQVTV-----DEMLLPVVQ-------AVHSPSSSLPVSLGDLERYHIIEVLE 471 Query: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +T + G +GAA LG+ TL SR+++LG+ Sbjct: 472 QTKWRIYGEQGAAHLLGLNPETLRSRLRKLGL 503 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 164/319 (51%), Positives = 216/319 (67%), Gaps = 11/319 (3%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 ++ QS M ++L + VA SD++VLI GE+GTGKE +A IHQLSPR+ KP VK+NCAA Sbjct: 338 MVGQSHLMLNILDLISQVAPSDTSVLITGESGTGKEHVADTIHQLSPRKSKPFVKVNCAA 397 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +P +L+ESELFGH+KGAFTGA GRFE ADGGT+FLDEIGD+PLE+Q KLLRVLQ+R Sbjct: 398 LPINLIESELFGHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPLEVQVKLLRVLQQR 457 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 EIER+GG++ I +N+RVI ATNR+L + + + +FR D++YRLNVFP+ +P LR+R EDI Sbjct: 458 EIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPIAMPALRERTEDIA 517 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 L HF R + I I AL LM + WPGN+RELENVIER+VLL +GNS++ Sbjct: 518 PLVHHFIGYFGRKTGKNISGISDRALAMLMDYGWPGNIRELENVIERSVLLAKGNSID-- 575 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 + LP +A+ P E ER I+ VL+ G ++G GAA Sbjct: 576 -----TVYLPA----HPAVEGIAKAGPPVLKNIFENERDHIISVLKACEGRISGENGAAK 626 Query: 647 RLGMKRTTLLSRMQRLGIS 665 L + TTL S+M++LGI Sbjct: 627 ILAIPPTTLSSKMKKLGIK 645 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 209/519 (40%), Positives = 300/519 (57%), Gaps = 36/519 (6%) Query: 158 VDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCAC 217 VD A+ S + +DL A + + + L ++S+++G N S WC Sbjct: 26 VDWRGAIGSIRNENDLFAFIHTVLRPY--LHTISVLIGIADGNGTISRWCHKTEGLTLLP 83 Query: 218 LPRCMPGESVL---LTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTF 274 LP+ + E + ++ L+ P +R L L ++G L++PL Sbjct: 84 LPQKV-SEHFMQDNISGVLEMYAPD-----------RRSALQTTLFNSGVREMLILPLRN 131 Query: 275 GNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD-LQESLQQEN-- 331 ++ G L L F + LQ R A + A + D L + LQ+E+ Sbjct: 132 HTNSFGFLCLLAKHHNTFPKS----LQISVKRYAGLLSAATLKLMLLDALPQWLQEEDMG 187 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 +E LL N + + A+ ++QQV VA +D+TVL+ GETGTGKE+ A AIH Sbjct: 188 GDGAELLLYNDLLPAKLVSGIALRPVIQQVRQVAPTDATVLLTGETGTGKELFAEAIHLS 247 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S RR K VKINCAA+P L+ESELFGH+KGAFTGAI+ G+FE+A+GGTLFLDEIG+L Sbjct: 248 SMRRQKAFVKINCAALPPQLIESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEIGEL 307 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 PL++Q KLLRV+QE+EIER+GG+ TIPVNVR+IAATNR L + V +FR DL+YRL VF Sbjct: 308 PLDMQAKLLRVIQEKEIERIGGTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRLYVF 367 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ LP LR+R EDIPLL +HF + A + I I + ++ LM + WPGN+RE+E+++ Sbjct: 368 PIHLPALRERREDIPLLLQHFARNAAMKYGKPIRHIASGSVLALMDYTWPGNIREMEHMV 427 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 ERAV+ + + + + + L A +S++ LL E ERQ I++ L Sbjct: 428 ERAVISSDEPQITIAVPGNRKAL-------EADGNSLSPLLTLA-----ETERQTIIRAL 475 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 R +NG + GP+GAA L +K TTL +RM++LGI V+ Sbjct: 476 RYSNGRIRGPQGAADLLDIKPTTLEARMKKLGIVKEHVV 514 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 159/323 (49%), Positives = 223/323 (69%), Gaps = 11/323 (3%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II QS ++D+ +++ +VA D++VLI GE+GTGKE +A IH+LSPR+ KP+V +NCAA Sbjct: 334 IIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTIHKLSPRKSKPMVTVNCAA 393 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +P +L+ESELFGH+KGAFTGA + G+FE ADGG++FLDEIG+LPLE Q KLLRVLQE+ Sbjct: 394 LPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEIGELPLEAQVKLLRVLQEK 453 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 EIERLGG+ T +NVR+I ATNR+L + V + +FR DL+YRLNVFP+ELP LR R EDIP Sbjct: 454 EIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPSLRQRKEDIP 513 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LL+ HF +K +++ + I + ++ +L +DWPGN+RELE++IER+VLL++ + Sbjct: 514 LLSHHFIKKYSKNASAQIGGVSAASMEELQQYDWPGNIRELEHLIERSVLLSKEEEITTI 573 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 + + L N +M +E ER I+ +L+ G V GP GAA Sbjct: 574 IVPTTTPSLAGSNSGEFRIKTM-----------EEMERDHILSILKMCKGKVFGPGGAAE 622 Query: 647 RLGMKRTTLLSRMQRLGISVREV 669 L M TTL S++++LGI + Sbjct: 623 ILNMPSTTLNSKIKKLGIKYEYI 645 >UniRef50_B2S230 Formate hydrogenlyase transcriptional activator FhlA n=3 Tax=Treponema RepID=B2S230_TREPS Length = 600 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 194/476 (40%), Positives = 268/476 (56%), Gaps = 42/476 (8%) Query: 228 LLTQTLQTRQPTLTHRAD-DLFLWQRDPLLL------------LLASNGCESALLIPLTF 274 L T LQ LT R D L Q+ P L L+ S L+ PL Sbjct: 128 LYTPRLQHHTIDLTKRQDLARILSQKSPYLFDPTLAHTDTYTELIPMPQNHSCLIAPLYI 187 Query: 275 GNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE-NHQ 333 + G L L H F+ + + + ++ I++AV DA +++ +L E N Sbjct: 188 DDTPIGMLTLDHRLCEQFTPDVVRFITTLSKLISLAVAQTDASETLSQKSHALLTERNAL 247 Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L+ Q + ++I S A L + +VA SD VL+CGETGTGKE++AR +HQLS Sbjct: 248 LAPQ---SPAFKNMIGTSPAWTRTLDAIKLVAASDLPVLVCGETGTGKELVARTVHQLST 304 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 R DKP V +NC+A+ SL ESELFGH+KGAF+GA+ THRGRFE+A GGTLFLDE+GDLPL Sbjct: 305 RSDKPFVPVNCSALVHSLAESELFGHEKGAFSGAVGTHRGRFELAHGGTLFLDEVGDLPL 364 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 ELQPKLLRVLQ+ ER+GG R++ V+VR+IAATN +L + V +FR DL YRL+VFPL Sbjct: 365 ELQPKLLRVLQDGVFERVGGERSVSVSVRIIAATNINLSEAVTQGKFREDLLYRLDVFPL 424 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 LPPLR+R ED+ LLA+HF QK+ + A +++ S +PGNVREL N++ER Sbjct: 425 SLPPLRERAEDVALLAEHFIQKIKTRPGFERTQLSPSAFKKIFSLTFPGNVRELRNLLER 484 Query: 574 AVLLTRGNSLNL-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTP-------------EN 619 A LL RG+++ HL R + +++ + P P + Sbjct: 485 AALLARGDTIGAEHLVCRTPESGTQTTVYPREHTEVSESVQPAIPLCIRDSSCMVRCTQG 544 Query: 620 DEEERQRIVQV-----------LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +EE +V L +NG + G GAA LG+K +TL S+M++LG+ Sbjct: 545 KKEETTLVVNFHQAQRAAIQAALDASNGKIYGANGAAEILGLKPSTLQSKMKKLGL 600 >UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Deltaproteobacteria RepID=C7LPL8_DESBD Length = 575 Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 166/350 (47%), Positives = 235/350 (67%), Gaps = 13/350 (3%) Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 A + + L++ LQ EN L + G+II QS A+ + +++ +A ++TVL+ G Sbjct: 235 AIKEIKQLKDRLQAENIYLQHEAAQKFNFGEIIGQSSAIAHVFDKIEQIASQNTTVLLQG 294 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 ETG GK V+ARAIH S R+D+ +V INC A+PA+L+ESELFG +KGAFTGA GRF Sbjct: 295 ETGCGKGVVARAIHARSARKDRAMVTINCTALPANLIESELFGREKGAFTGASARQMGRF 354 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E+ADGGT+FLDEIG++P+ELQ KLLRV+Q+ E ERLG RTI V+VR+IAA+NR L + + Sbjct: 355 ELADGGTIFLDEIGEMPMELQCKLLRVIQDGEFERLGSPRTIKVDVRIIAASNRKLEEEI 414 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 ++ FR DL+YRLNVFP+ +PPLR R +DI LL F K + + + I+ IP EAL L Sbjct: 415 KNGSFREDLYYRLNVFPITIPPLRARKDDIRLLVNFFVAKFNKKIGKKIETIPKEALEAL 474 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 ++DWPGNVRELE+VIERA+++++G SL + + Q P +E S + + L+ Sbjct: 475 ENYDWPGNVRELESVIERAIIISKGPSLQI---LDQFNTSPKPSETSG--ADVKALV--- 526 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + ER I+ VL++TN V G GAA L + +TL +RM++ GI+ Sbjct: 527 -----DLERDHIIHVLQKTNWRVEGKNGAAAILDINPSTLRARMRKFGIN 571 >UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis family n=4 Tax=Anaeromyxobacter RepID=Q2IQU1_ANADE Length = 562 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 203/543 (37%), Positives = 298/543 (54%), Gaps = 48/543 (8%) Query: 142 VALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSM--------- 192 + L ++ +D H R++ + VLS +DL ++ R + FG V++ Sbjct: 41 IGLPVVGQDDVHRRIVEEAIELVLSTVDLQAVLERTGRLLRRHFGETRVAINRLSAEDPT 100 Query: 193 -----VLGDHRK-----NEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTH 242 ++ D R+ F L S + LP C+ L+ R+P Sbjct: 101 RAEVVLVSDPRQPSPEVGTSFPLAGSAAGEALAKRLP-CV-------VDPLRPREPR--- 149 Query: 243 RADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQH 302 W+ +PLL A+ G S + PL F N G L +AH + + ++ + Sbjct: 150 -------WREEPLL---AAYGYGSLVSFPLVFENELLGTLDIAHPPAEGLLDCCFEVARQ 199 Query: 303 IADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 +A +AIA+ N+ + L L +EN L E++ + +S+ M ++++V Sbjct: 200 VAHLVAIALHNSLMVEEVQRLNRLLGRENALLKEEIRQIKRDSRYVAESEGMRAVVERVR 259 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 +VA S +TVL+ GETGTGKE +AR +H+ SPR + P V N AIP L+ESELFGH+KG Sbjct: 260 LVAPSTTTVLVRGETGTGKEGLARMVHEFSPRFNAPFVAANLGAIPEGLIESELFGHEKG 319 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 AFTGA GRFE ADGGTLFLDE+GD P +Q +LLRVLQER +ER+GG+ + V+VR Sbjct: 320 AFTGATRRRAGRFEQADGGTLFLDEVGDAPPSVQVRLLRVLQERVVERVGGTEPVKVDVR 379 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 VIAATNR+L +MV FR+DL+YRL VFP+ELPPLR+R ED+ L +F K A M+R Sbjct: 380 VIAATNRNLEEMVARGTFRADLYYRLAVFPIELPPLRERREDVRPLGTYFLAKQAALMHR 439 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 + + R L ++ WPGNVRELEN ++RA++L+ G L+L LPT + + Sbjct: 440 RPPRVGEDVWRALEAYGWPGNVRELENFLQRALILSPGQDLSLP-------ALPTSSALA 492 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + ++ A D+E R+ I + L G V GP GAA LG++ TTL +M++ Sbjct: 493 SPAAAAAAEPA-PPGRFDDEVRELIERALEHAGGRVYGPGGAAALLGLRPTTLQGKMKKY 551 Query: 663 GIS 665 G+ Sbjct: 552 GVG 554 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 163/370 (44%), Positives = 247/370 (66%), Gaps = 13/370 (3%) Query: 298 QLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDL 357 ++L I+ +++I N D + Q +++ ++ E+ S G I+ QS+AM+ + Sbjct: 156 RILNGISTQLSITFHNIDVQEQLKTFQGNIRDFPKEVKEEKKSEHGFHGIVGQSEAMQFI 215 Query: 358 LQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELF 417 +Q+ VA S S V+I GETGTGKE+IA+A+H+LS K +++INCAAIPA+L+ESELF Sbjct: 216 FEQITQVAPSQSNVIIFGETGTGKELIAQAVHELSEFSGKKMIRINCAAIPANLIESELF 275 Query: 418 GHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTI 477 GH+KG+FTGA +G+FE A T+FLDEIG+LPLELQ +LLRVLQE+EIER+GG++ I Sbjct: 276 GHEKGSFTGATEQRKGKFEQAHNSTIFLDEIGELPLELQARLLRVLQEKEIERIGGNKRI 335 Query: 478 PVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMA 537 VN R+I ATNR+L + V + +FR DL+YRLNVFP+ELPPLR+R EDIPLLA +F +K+ Sbjct: 336 KVNARIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPPLRERKEDIPLLADYFLEKLY 395 Query: 538 RHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPT 597 + I+ ++ +M+ W GN+RELEN++ER++L +G+ +R+ Sbjct: 396 PKTGKKINGFSQNVVKMMMANPWLGNIRELENMVERSMLTAKGDI------IREMDFPKV 449 Query: 598 LNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS 657 +N + + + L E E++ I++++++ NG + G GAA LG+ TTL+S Sbjct: 450 INYQNTDQEVQVKTLQ-------EFEKEYILKIIKKCNGRIFGEIGAAKLLGLPPTTLIS 502 Query: 658 RMQRLGISVR 667 +MQ+LGI + Sbjct: 503 KMQKLGIEKK 512 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 203/547 (37%), Positives = 309/547 (56%), Gaps = 47/547 (8%) Query: 140 QQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRK 199 Q + + L + R+ V+ + LS ++ +++V R+I L V LG R Sbjct: 127 QDITEQKLRQSLQTERLQVEAFLSNLSSAFINVPVSEVDRKIEK--ALQKVVNFLGFERS 184 Query: 200 NEKFSLWC-----SDLSASHCACLPRCMPGESVLLTQT---LQTRQPTLTHRADDL---- 247 S+W S L +H LP P + L+ ++ Q + R D+ Sbjct: 185 ----SIWHFTPDRSSLRITHSYALPGVKPPPTELMNLIPIWIEMIQLGESFRVSDVEELS 240 Query: 248 -FLWQRDPLLLLLASNGCESALLIPLTFGNHTPGAL-LLAHTSSTLFSEENCQLLQHIAD 305 W+ G +S + IP + G GA+ ++++ + +E Q L+ + + Sbjct: 241 DKFWREKQYCK--DQGGIKSIMFIPASVGGTIVGAITFVSYSVKKEWPDELTQRLRLLWE 298 Query: 306 RIAIAVGNA-------DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 A A+ +A + L++ L+ EN L +Q+ +II +S+A+ ++L Sbjct: 299 VFANALERKRADQKIQNALAEIRQLKDRLEAENVYLRDQIDVEYKHEEIIGKSEAIRNVL 358 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 QQ+ VA +DSTVLI GETGTGKE+IARAIH R+ + ++K+NCAA+PA+L+E+ELFG Sbjct: 359 QQIQQVAPTDSTVLILGETGTGKELIARAIHNAGQRKARAMIKVNCAALPAALIEAELFG 418 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H+KGA+TGA+++ GRFE A+G T+FLDEIG+LPLELQ KLLRV+QE + ERLG S+ + Sbjct: 419 HEKGAYTGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQEGQFERLGNSKPVK 478 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 +VRVIAATN L Q V++ +FR DL+YRLNVFP+ +PPLRDR EDIPLL ++ ++ Sbjct: 479 ADVRVIAATNVSLKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQEDIPLLVWAMVEEFSK 538 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTL 598 + I+ IP + + + + WPGN+REL N++ERA++L+ G +L + + Sbjct: 539 VFGKTIERIPRKNMEIMERYLWPGNIRELRNLVERAMILSNGGTLVVDI----------- 587 Query: 599 NEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 L S A P T E ER+ I +L +T + G GAA L MK TTL SR Sbjct: 588 -----LDGSAAAANEPMTME--AAERKHIGFILEKTGWRIRGKGGAAEILDMKPTTLHSR 640 Query: 659 MQRLGIS 665 +++LG+ Sbjct: 641 IKKLGVK 647 >UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Burkholderia sp. H160 RepID=B5WAL2_9BURK Length = 595 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 171/335 (51%), Positives = 228/335 (68%), Gaps = 18/335 (5%) Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 N L ++LL D++ + ++ ++Q V VA +D++VL+ GETGTGKE+IA+A+H+ Sbjct: 276 NRYLQDELLEAEAGADLV-GTAGLQGVMQHVRQVAGTDASVLVTGETGTGKELIAQALHR 334 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 +S R KPLVK+NCA +PA+L+ESELFGH+KGAFTGA+ GRFE+AD GTLFLDE+G+ Sbjct: 335 MSARSGKPLVKLNCAVLPANLVESELFGHEKGAFTGALARKAGRFELADEGTLFLDEVGE 394 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 LPL+LQ KLLRVLQ E ERLG RT +VR+IAATNR+L + +FR+DL+YRLNV Sbjct: 395 LPLDLQAKLLRVLQNGEFERLGSIRTQKTDVRIIAATNRNLAEEAATGRFRADLYYRLNV 454 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENV 570 FP+ELPPLR RPEDI L +HF + A R IDA+ L L ++ WPGNVREL++V Sbjct: 455 FPIELPPLRARPEDIEQLVEHFVRHYAAKYGRHIDAVADAQLNVLRAYRWPGNVRELQHV 514 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 IERAV+LT+G+ L L R + P E L ++ ER I++V Sbjct: 515 IERAVILTQGSQLALGDWFRDA--TPPACEALTL---------------EDAERAHILKV 557 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 L +T+ V+G GAA RLG+ TTL SRM+RL I+ Sbjct: 558 LEQTDWRVSGKAGAAERLGLPPTTLESRMKRLAIT 592 >UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H973_ANADF Length = 602 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 170/341 (49%), Positives = 222/341 (65%), Gaps = 11/341 (3%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 +E ++ EN L ++ + +I+ S+ + +L QV VA +DSTVLI GETGTGKE+ Sbjct: 264 EEKVRNENLALRGEIDGSSMFEEIVGSSEGLRRVLAQVAKVAPTDSTVLILGETGTGKEL 323 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 IARAIH+ S R + +++NCAAIP+SL+ SELFGH+KGAFTGA+ GRFE A+GGT+ Sbjct: 324 IARAIHRQSSRSTQAFIRVNCAAIPSSLITSELFGHEKGAFTGAVQRRTGRFESANGGTI 383 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDE+GDL E Q LLRVLQERE ER+G SR I V+VRV+AAT+RDL VE FR D Sbjct: 384 FLDEVGDLTAETQIALLRVLQEREFERIGSSRPISVDVRVLAATHRDLEAAVEAGTFRQD 443 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNVFPL++PPLR+R +DIPLLA++ + AR ++I I L ++DWPGN Sbjct: 444 LFYRLNVFPLQIPPLRERRDDIPLLAEYLIARYARTAGKSIRNIGKRTLESFRAYDWPGN 503 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VREL+NV+ERAV+L G + + +L S+A + E Sbjct: 504 VRELQNVVERAVILCDGETFAVDETWLTRETSAPAGRSVSLAGSLA-----------DSE 552 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 RQ I L + G V+GP GAA RLG+ R TL SR+Q L I Sbjct: 553 RQMIEAALAASRGRVSGPSGAAIRLGIARQTLESRIQALHI 593 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 173/376 (46%), Positives = 235/376 (62%), Gaps = 20/376 (5%) Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 +L H +R A+ R L L++ L++++ G+II S A+ ++L Sbjct: 117 ILTHALERYAL-------LRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVL 169 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 +V+ VA ++STVL+ GETGTGKE++A AIH S R ++P V++NCAA+ +LESELFG Sbjct: 170 SKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFG 229 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H+KGAFTGA+ GRFE+ADGGTLFLDE GDLP+E+Q KLLR LQERE ER+GG++TI Sbjct: 230 HEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIK 289 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 V+VRVI+ATNRDL M+E FR DL+YRLNVFP+ LPPLRDR ED+P L HF K AR Sbjct: 290 VDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFAR 349 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN---LHLNVRQSRLL 595 + AL +L S+ WPGNVRELEN+IERA++L RG L+ L R Sbjct: 350 SGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNAT 409 Query: 596 PTLNEDSALRSS-------MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRL 648 P S + + + P + ER+ I+ + ++N +A AA L Sbjct: 410 PVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIA---SAARML 466 Query: 649 GMKRTTLLSRMQRLGI 664 G+ R+TL RM++ G+ Sbjct: 467 GINRSTLYYRMRKHGL 482 >UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUG3_SYNAS Length = 535 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 157/352 (44%), Positives = 234/352 (66%), Gaps = 7/352 (1%) Query: 314 ADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 A A+ + L++ L+ EN L +++ G G+II S ++ + ++ VA S +TVL Sbjct: 186 AKAFDEIKRLKDQLEAENIYLRDEIKLKEGFGEIIGASDVIKSTIHKIRQVAPSKTTVLF 245 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 GETGTGK + AR +H+ S RRD+P V +NCA++PA+L+ESELFG +KGA+TG+ G Sbjct: 246 AGETGTGKGIFARFLHRESDRRDRPFVNVNCASLPANLIESELFGREKGAYTGSTARQIG 305 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 RFE+A+ GT+FLDEIG++P+ELQ KLL+V++E E ER+G I V+VR+IAATNRDL + Sbjct: 306 RFELANNGTIFLDEIGEVPMELQAKLLKVIEEGEFERIGSPHPIKVDVRIIAATNRDLQE 365 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 ++ +FR DL++RLN+FP+ +PPLRDR DIPLL K F K ++ NR I IP + + Sbjct: 366 EIKKGRFRQDLYFRLNIFPINIPPLRDRKGDIPLLVKAFVAKFSKSHNRDIKRIPAKIME 425 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH 613 L ++ WPGNVREL NV+ERAV+++ G+ L L + L ++ D + + + L Sbjct: 426 SLKNYAWPGNVRELINVMERAVIVSEGSELQLAEKIDAIPLDSSIRGDESFSTGSGETLA 485 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + ER+ I++ L++T + GPRGAA L ++ TL +RM++LGI Sbjct: 486 -------DAEREHILKALQQTGWRIEGPRGAAQILDLQPNTLRARMKKLGIK 530 >UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9Z4_CHRVI Length = 552 Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 183/419 (43%), Positives = 261/419 (62%), Gaps = 39/419 (9%) Query: 262 NGCESALLIPLTFGNHTPGALLL-AHTSSTLFSEENCQLLQHIADRIAIAVGN------- 313 +G S L IPL G G + A + + E+ L+ + + A A+ Sbjct: 155 SGLRSNLSIPLRVGGRVMGVIAFSAFHRTRAWPEDLIVRLKIVGEVFAQALARSRRETEL 214 Query: 314 ADAWRSMTDLQESLQQENHQLSE-------QLLSNLGIGDIIYQSQAMEDLLQQVDIVAK 366 A A +T L+E L+ EN L + Q+L++ +S +L ++ A Sbjct: 215 AAALAEITRLKERLEAENSYLRQSGCARPAQMLAS--------RSPRFNQVLDEIAQAAP 266 Query: 367 SDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTG 426 +++TVL+ GETGTGKEV+A +H LS RR++PL+K+NCAA+PASL+E+ELFG +KGA+TG Sbjct: 267 TNATVLLLGETGTGKEVLADTLHALSQRRERPLIKVNCAALPASLIETELFGREKGAYTG 326 Query: 427 AINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAA 486 A+ GRFE+ADGG+LFLDE+G+LPLELQ KLLRVLQ+ ER+GG+RTI V+VR+IAA Sbjct: 327 ALARQPGRFELADGGSLFLDEVGELPLELQAKLLRVLQDGVFERVGGTRTIRVDVRLIAA 386 Query: 487 TNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDA 546 TNR+L + V+ FR DLFYRLNVFP+ LPPLR+R EDIP LA F + + M + I+ Sbjct: 387 TNRNLARAVQAGGFREDLFYRLNVFPVTLPPLRERREDIPWLAWEFIKHFSDSMGKPIEH 446 Query: 547 IPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRS 606 + ++++ L+ + WPGNVREL N+IERA++L RG +L++ L Sbjct: 447 VAEDSMQALLDYHWPGNVRELRNLIERAMILARGPTLHVALECAP-----ATTTRPTATD 501 Query: 607 SMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ++A + ER I+Q+L +T+ + G GAA RLG+K TTL SRM+RLG+S Sbjct: 502 TLA-----------DNERAHILQILEQTHWRIRGAGGAAERLGLKPTTLESRMKRLGLS 549 >UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QC42_DESAH Length = 922 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/319 (51%), Positives = 212/319 (66%), Gaps = 13/319 (4%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +IIYQS M+ L+QVD +A +DSTVLI GETG GKE+IAR IH+ S R+D PLV ++ Sbjct: 616 NIIYQSLIMKKKLKQVDKIAGTDSTVLILGETGVGKELIARRIHERSLRKDYPLVVVDPT 675 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 +IP +L+ESELFGH+KGAFTGA GR E+A GTLF+DE+G++PL +Q KLLR LQE Sbjct: 676 SIPETLIESELFGHEKGAFTGADKQRTGRVELAHKGTLFIDEVGEIPLSIQVKLLRALQE 735 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 + I RLGGS TI + R+IAATNRDL + V FR DLFYRLNV P+E+PPLR R EDI Sbjct: 736 KTIVRLGGSTTIHSDFRLIAATNRDLQKEVAKGNFREDLFYRLNVIPIEIPPLRKRGEDI 795 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 L+A++F +K N E L+ ++WPGN+REL N+IERAVLL+ + L + Sbjct: 796 LLIAEYFLKKFRMKYNFPTIEFTPENKVMLIEYNWPGNIRELNNIIERAVLLSEEDQLEI 855 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 L + + P D R P DE +R+ I VL E NG + GP GAA Sbjct: 856 ELKTKNNSSHP----DDFFRDR---------PSLDEMQRRYIGTVLEECNGQIGGPGGAA 902 Query: 646 TRLGMKRTTLLSRMQRLGI 664 RLGMKRT+L +RM+ LG+ Sbjct: 903 ERLGMKRTSLYARMRTLGM 921 >UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEG0_ANADE Length = 520 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 177/405 (43%), Positives = 248/405 (61%), Gaps = 17/405 (4%) Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 +S L +PL + G LLL ++ + +LL +AD A+A+ NA A + + ++ Sbjct: 117 DSDLAVPLRVESTQLGFLLLRAAGKGRYTAAHAELLATVADPCAVALANALAHQELVQVR 176 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 + L + L+ +L ++I S + +++ V A +STVL+ GETG GK+VI Sbjct: 177 DELLDDKRFLNRELFHATA-DEVIGGSTGLRSVMELVRQAAPLNSTVLLLGETGVGKDVI 235 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A +H SPRR+ P +K+NC AIP L++SE+FGH+ GAFTGA HRGRFE ADGGT+F Sbjct: 236 ANVLHDASPRREGPFIKVNCGAIPEGLVDSEMFGHEAGAFTGARAAHRGRFERADGGTIF 295 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGDLP Q +LLRVLQ REIER+GG+R + V++RVIAAT+++L QMV + +FR DL Sbjct: 296 LDEIGDLPKGAQVRLLRVLQSREIERVGGTRPLKVDIRVIAATHQNLQQMVTEGRFREDL 355 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGN 563 F+RLNV P+ +PPLR R EDIP L +HF R + R I AL +L ++ WPGN Sbjct: 356 FFRLNVLPINIPPLRLRAEDIPALVRHFVAVKRRGLGIRGTPTISPGALARLQAYAWPGN 415 Query: 564 VRELENVIERAVLLTRGNSLNL---HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 VRELENV+ER ++ + G L L Q+R P+ +E R ++A ++ Sbjct: 416 VRELENVVERELVRSAGRGRELSFEELARSQARSAPSRHEAPPPR-TLADVMA------- 467 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 I VL T G + GP GAA LG+ +TL +RM RLGI+ Sbjct: 468 ----AHIEDVLAATGGKIHGPGGAAELLGVNESTLRNRMNRLGIT 508 >UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5C3_DESRD Length = 521 Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 176/407 (43%), Positives = 251/407 (61%), Gaps = 9/407 (2%) Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 S +++ L + G + + + ++EE+ +L + + ++IA+ NA R + L E Sbjct: 118 SVMVMHLYLDGSSIGEVAVRSQGTHKYTEEHGRLFVLLREPLSIALANALKHREVVRLNE 177 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 L ++ ++L + G +++ + +++Q VA+ D+ VL+ GETG GK +IA Sbjct: 178 LLADDSRYFQQELRAKQG-QEVVGAEFGLRGVMEQAQQVAQLDNPVLLLGETGCGKGMIA 236 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 IH+LS R P++ +NC AIPASLLESELFGH+KGAFTGA RGRFE A GGT+FL Sbjct: 237 DTIHKLSRRAQGPMITVNCGAIPASLLESELFGHEKGAFTGAERQKRGRFERAQGGTVFL 296 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIG+LPLE Q KLL VLQ +EIER+GGS+TI +++R+IAATNRDL MV QFR DL+ Sbjct: 297 DEIGELPLESQVKLLHVLQHKEIERVGGSQTIALDIRIIAATNRDLAGMVSSGQFREDLW 356 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNV 564 YRLNVFP+ +PPLR R EDIP L ++F Q A + + +P+ AL +LM++ WPGNV Sbjct: 357 YRLNVFPVMVPPLRQRKEDIPALVRYFLQHKAVELKLPSRPKLPSGALDKLMAYHWPGNV 416 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT-PENDEEE 623 RELEN IERA++ T G L + LL L + R S ++ P + Sbjct: 417 RELENFIERALIQTPGGELEI------DSLLDNLLQTDGTRGSWEPEVNSNQLPSLETVC 470 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 + I + LR G ++GP GAA LG+ TL RM ++GI+ + L Sbjct: 471 AEHIRKALRRAGGKISGPGGAAEMLGVHPNTLRQRMDKMGIAYKRRL 517 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 168/344 (48%), Positives = 239/344 (69%), Gaps = 21/344 (6%) Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L+ L+Q+N L E++ DI+ +S AM +L +V+ VA +DSTVLI GETGTGKE Sbjct: 810 LKGQLEQDNIALREEVSLLSPHDDIVARSPAMRQVLLRVEQVAPTDSTVLITGETGTGKE 869 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 +IARA+H LS R+ +PLV +NCA++P +L+ESELFG +KGA+TGA++ GRFE+ADGGT Sbjct: 870 LIARAVHNLSARKGRPLVTVNCASLPPTLMESELFGREKGAYTGALSRMAGRFEVADGGT 929 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDE+G+LP ELQ K+LRVL+E ERLG ++++ VNVR++AATNRDL Q+V+ +FR Sbjct: 930 LFLDEVGELPPELQAKMLRVLEEGRFERLGSTKSLHVNVRILAATNRDLAQLVQAGRFRR 989 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRLNVFP+ +PPLR+RPEDIP L F + + M + + + ++ L WPG Sbjct: 990 DLYYRLNVFPIAIPPLRERPEDIPPLVWAFIHQFEKRMGKHVQRVLKRSMDALERHAWPG 1049 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTL--NEDSALRSSMAQLLHPTTPEND 620 NVREL NVIE A++++ G++L ++ P + EDS+ A++L+ + Sbjct: 1050 NVRELRNVIEHAMIVSSGSTL---------KVFPPMIRAEDSS-----AEVLN-----LE 1090 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E ER+ I++VL VAG GAA LG+K TTL +RM++LG+ Sbjct: 1091 ESERRHILRVLTLAGWRVAGKGGAAEILGLKPTTLEARMKKLGV 1134 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 169/400 (42%), Positives = 252/400 (63%), Gaps = 10/400 (2%) Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 S ++ PL + G L L H S F+ +N +L+ ++ I++A+ ++ ++ Sbjct: 101 SCMVTPLYLDDTLQGVLTLDHHSCNRFTPQNVRLVGTLSKLISLAIAQSNDKEALEKEHL 160 Query: 326 SLQQENHQLSEQLLSNLG-IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 ++ QE + L E+ N G + ++I S + + +VA S + VLI GETGTGKEV+ Sbjct: 161 AILQERNFLLER---NAGALSELIGNSVSWNRVKDAAAMVAASQTPVLIQGETGTGKEVV 217 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARA+H+LS R+ P + +NC+AI A + ESELFGH+KG FTGA+++ +GRFE+ADGGTLF Sbjct: 218 ARAVHRLSDRKGGPFIPVNCSAISAGVAESELFGHEKGGFTGAVSSRKGRFELADGGTLF 277 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGDLPLE+QPKLLR LQE+++ER+GG TI V+VR+IAA++ DL+ V + +FR DL Sbjct: 278 LDEIGDLPLEIQPKLLRALQEKKLERIGGESTISVDVRIIAASHVDLYTAVRENRFREDL 337 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNVFP+ LPPLR+R DI +LA++FT ++ A+ E++ L+ DWPGNV Sbjct: 338 YYRLNVFPIRLPPLRERGSDILILAEYFTGQIRARAGHKDLALAPESVDILLQADWPGNV 397 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 R+L+N +ERA +L+RG +R ++ + + A L D + Sbjct: 398 RQLQNTLERAAILSRGGV------IRAEHIVADETPEDSFCLPGADLDATALLRFDVMVK 451 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + +VL T G V G GAA L +K TTL S++++ GI Sbjct: 452 AYLQKVLTRTGGKVYGKGGAAEILDLKPTTLHSKLKKYGI 491 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 181/451 (40%), Positives = 262/451 (58%), Gaps = 22/451 (4%) Query: 144 LRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKF 203 +R LE+ L++I+ V S LD +++ + + L S+VL + + Sbjct: 163 IRSLEQRTKIQATLIEISKVVSSTLDQNEVFDSIMVTMEKSLRLEKGSIVLFNKEEALLR 222 Query: 204 SLWCSDLSASHCACLPRCMPGESV----------LLTQTLQTRQPTLTHRADDLFLWQRD 253 + S LS PGE + ++ +++ + P +R L ++ D Sbjct: 223 IVAASGLSPEEIEK-GTYQPGEGITGKVYESGEPIIIESVAS-HPDFLNRVGYLSHFKHD 280 Query: 254 PLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGN 313 P + L C L T G + HT F LQ +A I+ ++ Sbjct: 281 PHNVSLL---CAPILSEQTTLGVVNAFIVQNKHTDLKSF----LDFLQVVASIISQSI-- 331 Query: 314 ADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 + + ++ + +EN QL +L + G +I ++ +ME + +++ +VA S ++VLI Sbjct: 332 -KIQNLVEEAKKEISRENIQLKRELKNKYKFGSLIGKAASMEKMFEKIQLVADSRASVLI 390 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 GE+GTGKE+IA AIH S R + P VKINCAAIP +LLESELFGH KG+FTGA+ +G Sbjct: 391 TGESGTGKEMIANAIHYNSSRSENPFVKINCAAIPENLLESELFGHKKGSFTGAVTDKKG 450 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 +FE+AD GT+FLDEIG++ L LQ KLLRVLQEREIE +G ++ V+VR+IAATN +L Q Sbjct: 451 KFELADTGTIFLDEIGEMDLNLQSKLLRVLQEREIEAIGSTKAKKVDVRIIAATNAELEQ 510 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 +V +++FR+DLFYRLNV + PPLRDR EDIPLL HF +K + N++I I EA R Sbjct: 511 LVAEKKFRADLFYRLNVVKINTPPLRDRVEDIPLLMNHFLEKYTKDNNKSIKGISREASR 570 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 L+ + WPGNVRELENVIERAV+L + LN Sbjct: 571 LLLKYRWPGNVRELENVIERAVVLAQDEILN 601 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 170/401 (42%), Positives = 243/401 (60%), Gaps = 16/401 (3%) Query: 266 SALLIPLTFGNHTPGALLLAH-TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 S + +P+ F G L + + + E + ++L + + AIA+ NA L Sbjct: 651 SCICVPMKFRETVLGVLYVDNRIFPSALKESDIRILDFFSSQAAIALDNARIHEQNRALI 710 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 L++E L EQ + + + A+ +L V +A +DSTVLI GETG GKE+I Sbjct: 711 RKLEEEKRYLEEQQSEFQPPVEFVGECAAVRKVLNDVKKIAATDSTVLILGETGVGKELI 770 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 + AIH+ S R KP +++NC+ P L+ SELFGH+KGAFTGA GRFE+ADGGTLF Sbjct: 771 STAIHERSSRAGKPFIRVNCSMFPEGLIASELFGHEKGAFTGADKRRLGRFELADGGTLF 830 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGD+ E+Q +LLRVLQ +E ER+GG T+ + R++AATNRDL + V+ +FR DL Sbjct: 831 LDEIGDISHEVQVRLLRVLQNKEFERVGGRSTLRSDFRLLAATNRDLREDVKTGKFREDL 890 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNV L++PPLR+R EDIPLL +F + A+++ + A+ E L +L+++DWPGNV Sbjct: 891 YYRLNVLSLKIPPLRERKEDIPLLVDYFLDRHAKNLGKPRGAVTPEDLDKLVAYDWPGNV 950 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 RELENVIER+ +L+ G L +P L +S + L +E ER Sbjct: 951 RELENVIERSAILSSGARLE----------IPDL-----FQSGASFALDREALSLEENER 995 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + I+ L++T G V GP GAA L + TL SR+++LGI Sbjct: 996 RHILWALKKTGGKVRGPGGAAELLEINHNTLFSRIKKLGIK 1036 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 162/349 (46%), Positives = 230/349 (65%), Gaps = 16/349 (4%) Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 A + L++ L+ EN L + I+ QS +++ +L + + VA +++TVLI G Sbjct: 304 ALSEIKTLKDRLEAENIYLRHENKRRHHFAQILGQSDSLKYVLYRAEQVAPTNATVLILG 363 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 ETGTGKE+IA AIH +SPR+++P++ +NCAA+P +L+ESELFG +KGAFTGA GRF Sbjct: 364 ETGTGKELIAFAIHDMSPRKERPMITVNCAALPGNLIESELFGREKGAFTGADTRRIGRF 423 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E+A+G TL LDEIG+LPLELQ KLLRV+Q E ERLG TI V+VR++A TNR+L + + Sbjct: 424 EVANGSTLCLDEIGELPLELQAKLLRVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEEI 483 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 + +FR DL+YRLNVFP+ +PPLR R EDIPL+ F ++ +R + + I +I EA++ L Sbjct: 484 RNGRFRQDLYYRLNVFPITVPPLRQRKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKAL 543 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 + WPGNVRELE++IERAV+L G L L + S A S++ L Sbjct: 544 QDYPWPGNVRELESIIERAVILCPGPVLQLADKLEIS--------SPAFSSTVRTL---- 591 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +E ER +I+++L ET + G GAA LG+ +TL +RM +LGI Sbjct: 592 ----EETERDQILKILSETRWRIEGKNGAAAILGIHPSTLRARMHKLGI 636 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 162/324 (50%), Positives = 224/324 (69%), Gaps = 11/324 (3%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II S M+ + + + VA D++VL+ GETGTGKE +A IH LSPR+ KP VK+NCAA Sbjct: 169 IIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHLSPRKAKPFVKVNCAA 228 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +P L+ESELFGH+KGAFTGA+ G+FE ADGGT+FLDEIGD+P +LQ KLLRVLQE+ Sbjct: 229 LPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPADLQVKLLRVLQEK 288 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 EIER+GG+ I VNVR+IAATNR+L + + + +FR DL+YRL+VFP+ L LR+R +DIP Sbjct: 289 EIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIMLSALRERRDDIP 348 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LL HF + A + + I ALRQLM + WPGNVREL+N+IER+VLL+R + Sbjct: 349 LLIAHFIRLYASATGKGVSDIAPAALRQLMDYAWPGNVRELQNLIERSVLLSRESI---- 404 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 +R+ L ++ +++ + S+ + E ER+ I+ VL++ N ++GP GAA Sbjct: 405 --IREVILPVSVKKETTVVSTETDIKTIV-----ELEREHILTVLKKCNHKISGPGGAAE 457 Query: 647 RLGMKRTTLLSRMQRLGISVREVL 670 L + +TL S+M++LGI R L Sbjct: 458 LLNLPPSTLASKMKKLGIVKRHTL 481 >UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRC8_SYNAS Length = 697 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/348 (47%), Positives = 230/348 (66%), Gaps = 19/348 (5%) Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 + L+ L++EN L ++ + G G II S + +L +V VA +D+TVLI GETG Sbjct: 365 INKLKLQLEKENIYLRNEIKTERGFGGIIGHSDTLRYVLFRVQQVAPTDATVLILGETGV 424 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GK ++A AIH++S R+DK +V +NCAA+P++L+ESELFG +KGAFTGA GRFE+AD Sbjct: 425 GKGMVAHAIHEMSARKDKTMVTVNCAALPSNLIESELFGREKGAFTGAYARQAGRFEVAD 484 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGT+FLDEIG+LPLELQ KLLRVLQ+ E ERLG RT+ V+VRVIA+T+RDL + + + Sbjct: 485 GGTIFLDEIGELPLELQTKLLRVLQDGEFERLGSPRTVKVDVRVIASTSRDLKVEMHNGR 544 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR DL+YRLN FP+ LPPLR R EDIP LA+HF K +R +N+ +++ + ++ L ++ Sbjct: 545 FREDLYYRLNTFPVTLPPLRMRVEDIPELARHFIDKYSRKLNKQFESLSKDTMQMLQAYA 604 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRS--SMAQLLHPTTP 617 WPGNVRELE+VIER V+ + L V Q P + D ++ +MA Sbjct: 605 WPGNVRELEHVIERGVITSPEPVFQL---VEQLEQGPGMEADKPIKGFETMA-------- 653 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 R+ I+QVL +T + G GAA LG+ +TL R+++LGI Sbjct: 654 ------REHILQVLHKTGWKIEGKGGAAAILGLNPSTLRFRLKKLGIK 695 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/342 (48%), Positives = 230/342 (67%), Gaps = 25/342 (7%) Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 +QEN +L EQ+ + + D++++S AM+ + ++ VA +D+TVLI GE+GTGKEV+ARA Sbjct: 127 EQENVRLKEQIEEHAHV-DLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARA 185 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH LS RR P+V ++C A+ +LLESELFGH+KGAFTGA +G+FE+A+GGT+FLDE Sbjct: 186 IHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFLDE 245 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IGD+ L+ Q LLRVLQEREI R+GG++ I V+ R++AATN+DL +++E+ FR DLFYR Sbjct: 246 IGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLFYR 305 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 LNVF +ELPPLRDR EDIPLL HFT+K A MN+ + + + A+ L + WPGNVREL Sbjct: 306 LNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPGNVREL 365 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE-DSALRSSMAQLLHPT----TPENDEE 622 EN +ERA+++ + P L E D L+ A + T TP+ E+ Sbjct: 366 ENAVERAMVVAQE---------------PELRETDFVLKVKAAATMSSTNGTGTPKTLED 410 Query: 623 -ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 E++ I+ VL ETN AA L + R TL +++R G Sbjct: 411 IEKEHILHVLDETNW---NQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=C5BI62_TERTT Length = 642 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/374 (44%), Positives = 242/374 (64%), Gaps = 14/374 (3%) Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 + + I++RI +A R +++L+ L+ EN L ++ L II + ++ + Sbjct: 273 VFRDISERIETQRQLENALRELSELKARLEDENAYLQQEYLIERNYHGIIGEGAGIKRIK 332 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 QQ+++VA++++ VL+ GE+GTGKE+IA+AIHQ S R DKP++++NCAAI L ESE FG Sbjct: 333 QQIELVAQTEANVLVYGESGTGKELIAQAIHQASRRADKPMIRVNCAAIAHELFESEFFG 392 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H KGAFTGA+ GRFE+A+GGTLFLDE+G++PLELQ KLLRVLQE ++ER+G +T Sbjct: 393 HIKGAFTGALRDRIGRFELANGGTLFLDEVGEIPLELQSKLLRVLQEGQLERVGEEKTRE 452 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 V+VR+IAATNRDL + +FR DL++RLNVFP++ PLRDR EDI LLA H+ +++ Sbjct: 453 VDVRIIAATNRDLKAEADQGRFREDLYFRLNVFPIQAVPLRDRREDIGLLAAHYLEQLCH 512 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR----- 593 R + L+QL + WPGNVREL+NV+ERAV+ +R LNL L + Sbjct: 513 KFPRQQCKLTQRDLKQLRDYAWPGNVRELQNVLERAVITSRAGRLNLDLPQHNHQDNAQP 572 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEE--RQRIVQVLRETNGIVAGPRGAATRLGMK 651 LP LN +S + + ++D + + ++ L ++ + G GAA LGMK Sbjct: 573 TLPALNTESITETEI-------LSDDDMQALVKHNMLAALEKSGWKLFGSDGAAALLGMK 625 Query: 652 RTTLLSRMQRLGIS 665 TTL SR++R+G+ Sbjct: 626 PTTLASRIKRMGLK 639 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 166/345 (48%), Positives = 223/345 (64%), Gaps = 19/345 (5%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L++EN L +QL + + S ++ + + ++ VA +DSTVLI GE+GTGKE+IAR Sbjct: 128 LERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIAR 187 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH SPRRD P+V INC AIP LLESELFGH+KGAFTGA T GRFE+A+GGT+FLD Sbjct: 188 AIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLD 247 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIGD+ LQ KLLRV+QE+ ER+G +RT+ V++R++AATN+DL + VE ++FR DL+Y Sbjct: 248 EIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYY 307 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV P+E+PPLRDR DIPLL F K+A R + I A+ LM WPGNVRE Sbjct: 308 RLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRE 367 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS-------ALRSSMAQLLHPTTPEN 619 LENV+ER ++L+ G++++ ++ L DS L S + H Sbjct: 368 LENVVERVLILSSGDTID-----KEDLPATILGLDSKEPEAGLKLPSGGIRFDHAV---- 418 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +E E+ IVQ L E N + AA L + RTTL+ +M+R I Sbjct: 419 EEYEKNLIVQALEEANWV---KTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 166/344 (48%), Positives = 229/344 (66%), Gaps = 18/344 (5%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 LQ+E L +L N G I+ SQA+ D+ ++ VA S++TVL+ GE+GTGKE+ A Sbjct: 125 LQEEVTFLRSEL--NKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITAL 182 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 +IHQLS RRDKP V INCAA+P SLLESELFGH+KGAFTGA+ GRFE+A+ GTLFLD Sbjct: 183 SIHQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLD 242 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EI ++PL +Q KLLRVLQE+E ER+GG+ +I ++VRVIAATNRD + + FR DLFY Sbjct: 243 EITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFY 302 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV P+ LPPLR+R EDIPLLA HF +K + + EA+ L+S++WPGN+RE Sbjct: 303 RLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPSQEQRMSP---EAMGLLISYEWPGNIRE 359 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN----DEE 622 L+NVIER+++L +GN + H L + + +++ L P++ DE Sbjct: 360 LQNVIERSIILAQGNEIKPH------HLPKEIQKLDEVKNETTHGLIINFPDDGISFDEV 413 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 E++ I++ L ++NG AA LG+ R+ LL R Q+ + + Sbjct: 414 EKELILKALEKSNG---NQTRAAQLLGITRSALLYRAQKYRLKI 454 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 307 bits (786), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 158/342 (46%), Positives = 230/342 (67%), Gaps = 26/342 (7%) Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 +QEN + E+ II +SQ M+DL +++D+V+KS+S++LI GE+GTGKE++A+A Sbjct: 119 KQENFDVEEEFEG------IIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKA 172 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH+ S R ++P + INC+AIP L E+ELFGH+KG+FTGA N G+ E+A GTLFLDE Sbjct: 173 IHRRSKRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDE 232 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IG++PL +Q KLLRVLQERE R+GG I + RVI+ATNR+L +MVE+++FR DLFYR Sbjct: 233 IGEMPLFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYR 292 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 +NV L++PPLR+R EDIPLL K F K ++ N+ + I +AL LM++DWPGNVR+L Sbjct: 293 INVIHLKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQL 352 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND-----EE 622 EN+IERAV+L +G + + LP ++S+ ++ EN+ + Sbjct: 353 ENIIERAVVLCQGEIIT-------ANHLP-----DRIKSNSQKISENIRSENNSLNLYDI 400 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E+ I++VL+E N AA +LG+ R L ++M+ G+ Sbjct: 401 EKNIILKVLQEEN---FNQTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMI0_DESAH Length = 524 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 167/407 (41%), Positives = 249/407 (61%), Gaps = 20/407 (4%) Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 SA++I + GAL + + +++ +L+ + + IA+ N +R + +L+ Sbjct: 116 SAIMIEMVLTGKRMGALPMISKKQIRYEKKHIRLISLLNEPFGIALTNCLRYRKVKELKN 175 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 L + L ++L ++ I +I+ ++ +++ V VA +S VL+ GETG GKEVIA Sbjct: 176 RLLDDKRYLEKELF-HVNIQEIVGSDGGLKGVMESVAQVAALNSPVLLLGETGVGKEVIA 234 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 +AIH S RR P +K+NC AIP SL++SELFGH+KGAFTGA++ GRFE A GT+FL Sbjct: 235 KAIHMASGRRSGPFIKVNCGAIPESLIDSELFGHEKGAFTGALSRKLGRFERAHLGTIFL 294 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIG+LPL+ Q +LLRVL++ EIER+GG T+ ++ RV+AATNRDL M+++RQFR DL+ Sbjct: 295 DEIGELPLDAQTRLLRVLEDMEIERVGGDETVSIDSRVLAATNRDLDAMIKNRQFREDLY 354 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ---LMSWDWPG 562 +RL VFP+E+PPLRDR DIP L +F K A+ + A IP AL LM++DWPG Sbjct: 355 FRLKVFPIEIPPLRDRKTDIPALVHYFMHKKAKEI--AFPGIPALALNSLPILMAYDWPG 412 Query: 563 NVRELENVIERAVLLTRGNSLNLH-----LNVRQSRLLPTLNEDSALRSSMAQLLHPTTP 617 N+RELEN +ERA++ RG L+ + ++ + P + D ++ L Sbjct: 413 NIRELENAVERALITCRGMPLSFDDLATAIGPKKGMIAPK-DTDVEATDGLSTL------ 465 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + I + L++ G V GP GAA L + TL +M+RLG+ Sbjct: 466 --NAAAASHIRKALQKCRGRVEGPHGAAVLLDVHPATLRQKMRRLGV 510 >UniRef50_Q12K16 DNA-binding protein Fis / transcriptional regulator, Fis family n=23 Tax=Alteromonadales RepID=Q12K16_SHEDO Length = 495 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 160/351 (45%), Positives = 230/351 (65%), Gaps = 18/351 (5%) Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 A + L E L ENH+L + L G I S M LLQQ+ +VA ++STVLICG Sbjct: 145 ALNQVQALSEQLAAENHELQQALADKTGNMGIKGSSPVMAHLLQQIHLVANTNSTVLICG 204 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 E+GTGKE++AR +HQLS R+ K +V +NCAA SLLESELFGH+KGAFTGA +G+F Sbjct: 205 ESGTGKELVARNLHQLSRRKHKLMVSVNCAAFSPSLLESELFGHEKGAFTGANTQRKGKF 264 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E AD GTLFLDE+ +L LE Q KLLRV+QE+E +RLGGS I +++R+IAA++ +L + V Sbjct: 265 EQADKGTLFLDEVAELSLEAQSKLLRVIQEQEFQRLGGSSNIKIDIRLIAASHHNLLERV 324 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 E FR DL+YRLNVFP+ +PPLRDR ED+P L + +++ + + I + + +L Sbjct: 325 EQGLFRMDLYYRLNVFPIHVPPLRDRLEDMPELVESMLLNISKKLAKKITCVSQAGMAEL 384 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLH-LNVRQ-SRLLPTLNEDSALRSSMAQLLH 613 ++ WPGNVREL+N++ER +L++ + L++H L ++ S++ P+ N R ++AQ Sbjct: 385 KAYHWPGNVRELQNILEREAILSQASELDIHQLPFKELSKIKPSAN-----RQTLAQ--- 436 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + I L + N ++G GAA +LG+ +TL S+MQ+LGI Sbjct: 437 --------AQATHIRHTLEQLNWQISGEHGAAKQLGLPASTLRSKMQKLGI 479 >UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTG8_DESBD Length = 806 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 159/349 (45%), Positives = 230/349 (65%), Gaps = 14/349 (4%) Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 A + + L++ LQ EN L +++ G+II QS ++ ++ +Q++ V+ ++TVL+ G Sbjct: 469 ANKEINQLKDRLQAENICLRQEVAREYNFGEIIGQSDSIVNMFEQIEQVSPLNATVLLLG 528 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 ETGTGK ++ARAIH S R+ + ++ +NCAA+PA+L+ESELFG ++GAFTG+ GRF Sbjct: 529 ETGTGKGLVARAIHARSARKGRSMITVNCAALPANLIESELFGRERGAFTGSNAQQLGRF 588 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E+ADGGT+FLDEIG++PLELQ KLLRV+Q+ E+ERLG RTI V+VR+IAA+NR+L + Sbjct: 589 ELADGGTIFLDEIGEMPLELQSKLLRVIQDGEMERLGSPRTIKVDVRIIAASNRNLQDEI 648 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 +FR DLFYRLNVFP+ +PPLR R DI LL F K + + I +P L L Sbjct: 649 RKGRFREDLFYRLNVFPISIPPLRQRDGDIALLINFFVAKFNKKTGKNIKTVPKNTLNAL 708 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 + WPGNVRELE+V+ERAV+ + G+SL + SR T+ D +++ + Sbjct: 709 QEYHWPGNVRELESVVERAVITSPGSSLQILDRFETSR--KTVPVDGNIKALV------- 759 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + ER I+QVLR+T + G GAA L + +TL +RM++ GI Sbjct: 760 -----DLERDHILQVLRKTGWRIEGKSGAAALLEINPSTLRARMRKFGI 803 >UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLD5_DESAA Length = 1035 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 173/409 (42%), Positives = 251/409 (61%), Gaps = 22/409 (5%) Query: 260 ASNGCESALLIPLTFGNHTPGALLLAHTS---STLFSEENCQLLQHIADRIAIAVGNADA 316 + +S + +PL + G +L H + ++ F EE+ +L + + AIA+ NA A Sbjct: 641 SEGAIQSKICVPLCLHDQVVG--VLYHDNRLLASAFREEDLDVLSYFSALAAIALDNARA 698 Query: 317 WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 + + L +E E LS L +I+ S A+ ++L +++ VA +++TVLI GE Sbjct: 699 YDQIRRWNIKLSREKQYYEEAHLSYLQFDEIVGHSPAINEVLSKIEQVANTETTVLITGE 758 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 TG GKE++ARAI + S R +P + + +A+P L+ SEL GH+KGAFTGA + GR E Sbjct: 759 TGVGKELVARAIQKHSSRAQQPFIGVQLSALPKDLMASELLGHEKGAFTGATHRQAGRLE 818 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 +ADGGTLFLDEIGD+ ++Q +LLRVLQ R+ ER+GG +T+ + R+IAATNR+L +V Sbjct: 819 LADGGTLFLDEIGDISHDIQIRLLRVLQTRQFERVGGMKTLSSDFRLIAATNRELESLVR 878 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 D +FR+DL+YRLNVFP+ +PPLRDR EDIPLLA HF + A +N+ + I + L Sbjct: 879 DGRFRADLYYRLNVFPIYVPPLRDRREDIPLLAMHFLKLHAAKLNKQVMRISDREMDMLK 938 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN-EDSALRSSMAQLLHPT 615 +DWPGNVREL+NV+ER V+L+ + + + QS P L D+A T Sbjct: 939 EYDWPGNVRELKNVVERGVILS--TNRDFRMPELQSGDCPPLTVGDTA-----------T 985 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 EN ER I+++L+ T VAG GAA L + +TL RM +LGI Sbjct: 986 LAEN---ERSHILRILKRTGWKVAGASGAAKILDIPPSTLSFRMNKLGI 1031 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 148/280 (52%), Positives = 204/280 (72%), Gaps = 1/280 (0%) Query: 317 WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 +RS+ ++ LQ+E QLS QL + ++I S+AM+++ QV A S ST+L+ GE Sbjct: 173 YRSVAAERQQLQEEKRQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGE 232 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 +GTGKEVIARAIH LSPR+D P +K+NCAA+ +LLESELFGH+KGAFTGA +GRFE Sbjct: 233 SGTGKEVIARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFE 292 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 +A GGTLFLDEIG++ Q KLLRVLQERE ER+GGSR+I V+VR++ ATNRDL + V Sbjct: 293 LAHGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVA 352 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 +FR+DL+YR+NV + +PPLR+R EDIP L +HF +K RA+ A+ +A++ +M Sbjct: 353 KGEFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMM 412 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLN-LHLNVRQSRLL 595 + WPGNVRELEN +ER + RG+ + +H + +Q++ L Sbjct: 413 NCYWPGNVRELENCVERTATMMRGDLITEVHFSCQQNKCL 452 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 159/366 (43%), Positives = 238/366 (65%), Gaps = 17/366 (4%) Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 +L++I DR+ D +T+ + L+ E +L+ DI+ + M+++L Sbjct: 264 ILRNIEDRLEAE----DQISFLTNQTQYLEDEIKELTSGY-------DIVAEDPKMQNVL 312 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 V VA +D+TVLI GETGTGKE+++RAIH+ S R DKPL++INC AIP +L+ESELFG Sbjct: 313 SLVKHVAPTDATVLINGETGTGKELVSRAIHEASNRSDKPLIRINCGAIPTNLIESELFG 372 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H KGAFTGA + +GRF +AD GT+FLDEIG++P+ELQPKLLRV+QE E + +G S TI Sbjct: 373 HKKGAFTGATSDRKGRFLLADKGTIFLDEIGEMPIELQPKLLRVIQEGEFDPVGSSETIK 432 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 VNVR+IAAT+RDL Q D +FR DL+YRLNVFP+E+P LR R ED+ L+A ++ Sbjct: 433 VNVRIIAATHRDLLQHAADGKFREDLYYRLNVFPIEVPALRHRAEDVCLIAGEMINHFSK 492 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTL 598 +N+ + + LM + WPGNVREL+N+IERA+++++ ++N+ ++P + Sbjct: 493 KLNKPMVELSDIDKSHLMDYHWPGNVRELQNLIERAIIISKSGTINI------KDVIPKM 546 Query: 599 NEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 D + T+ E + E++ I++ L++T ++G GAA L + TTL S+ Sbjct: 547 QSDEEHPPKTLKDKVYTSQELLKLEKENILKALKQTRWKISGKNGAAELLQLPATTLASK 606 Query: 659 MQRLGI 664 ++ LG+ Sbjct: 607 IKVLGL 612 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 186/410 (45%), Positives = 246/410 (60%), Gaps = 26/410 (6%) Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENC-QLLQHIADRIAIAV---GNADAWR 318 G S L +PL N +++ S L E+ LQ I D A+ D R Sbjct: 283 GIRSGLHVPLRVENRVHYLIVVESHSGILAGTEDVLNRLQIIGDLFVNALHRKATEDELR 342 Query: 319 SMTD----LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 S D L++ L+ E L ++ ++ I+ QS+ ++ +L V+ VA + STVL+ Sbjct: 343 SSCDEIARLKDKLELEADYLRSEVRASRFNDQIVGQSEPIQGVLAMVEQVAPTPSTVLVY 402 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GETGTGKE++A+AIH SPRRDK +VK+NCA++P+SL+ESELFG ++GA+TGA+ GR Sbjct: 403 GETGTGKELVAQAIHNHSPRRDKLMVKVNCASLPSSLVESELFGRERGAYTGALTRQMGR 462 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 FE+ADG +LFLDEI +L LELQ KLLRVLQE E ERLG RTI V+VRVIAATNR+L + Sbjct: 463 FELADGSSLFLDEIAELSLELQSKLLRVLQEGEFERLGSPRTIKVDVRVIAATNRNLLEE 522 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 V +FR DL+YRL+VFP+ +PPLR+R EDIPLLA F + M + I I + Sbjct: 523 VRKGRFREDLYYRLSVFPIVVPPLRERREDIPLLAWEFVRDFNEKMGKRILRIAKRDMLA 582 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 L S+ WPGNVREL NVIE AV+++ G+ L + L P + Sbjct: 583 LQSYSWPGNVRELRNVIEYAVIVSPGDELKIRLPENIVNAPPQM---------------- 626 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 TT E E ER I VLR T + G GAA L + TL SRM++LGI Sbjct: 627 TTLE--EMERHYIQDVLRRTEWRIKGEGGAAHILDLNPATLYSRMKKLGI 674 >UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfovibrio RepID=B8IZ98_DESDA Length = 554 Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 166/404 (41%), Positives = 243/404 (60%), Gaps = 2/404 (0%) Query: 259 LASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWR 318 +A+ G S PL T G ++A S ++ ++L+ +AD IA A+ NA + Sbjct: 131 IAAEGIVSFAGQPLVCRGETLG--VIAFFSRDTLAQGAMEMLRMVADHIAYAITNARLFE 188 Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 + + + EN L E+L II +S A++ + +Q+ +V+++++TVLI G +G Sbjct: 189 ITRSITQRRELENAHLREELYEARQFTGIIGKSAAIKAIREQILVVSETEATVLIQGASG 248 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 TGKE++A +H+ S R++ P +KINCAAIP L ESE FGH KGAFTGAI+ G F++A Sbjct: 249 TGKELVAHELHKNSKRKNNPFIKINCAAIPHHLFESEFFGHVKGAFTGAIHDRMGFFQLA 308 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 DGGTLFLDEI ++PLELQ KLLRVLQE E R+G + ++R+IAATN+DL + R Sbjct: 309 DGGTLFLDEIAEIPLELQGKLLRVLQEGEFRRVGEEKNRHTDIRLIAATNKDLKAAIRKR 368 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 FR DL+YRL VFPL +P L++R EDIPLL +HF + R R + +P + +L + Sbjct: 369 TFRDDLYYRLQVFPLTVPTLKEREEDIPLLVRHFIRIFCRKNGRRVFDVPEAQMNRLRQY 428 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE 618 DWPGN+REL+N +ER V+ R +L + ++ L +S T + Sbjct: 429 DWPGNIRELQNFVERMVITGRPEQALAYLALCEAASPEAEEAAPELCASFGIPKILTEKQ 488 Query: 619 NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + E+ + L TN ++ G RGAA LGMK TTL+SR++R Sbjct: 489 MRQLEKDNMKAALERTNWLIYGNRGAAALLGMKPTTLISRLKRF 532 >UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5B4_DESRD Length = 522 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 185/513 (36%), Positives = 278/513 (54%), Gaps = 18/513 (3%) Query: 154 HRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSAS 213 + L+ I NA++ + L ++ EI+ S+ L DH S + S S Sbjct: 20 YETLLRINNAIVQQTTRESLFQALSNEIYQLIEYDRFSINLYDHEL-RSLSYFASAKGVS 78 Query: 214 HCACLPRCMPGESVLLTQT-LQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 + R P E L+ QT ++T++P + + + + + G + PL Sbjct: 79 LGGKMTR--PLEKGLIAQTVIRTKEPLIIPDVKNQSYFSN---MNNMIEAGLNVTMGYPL 133 Query: 273 TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH 332 + G+L + + +E + ++ ++AIAV N A + L ESL+ E Sbjct: 134 IVRDTVLGSLHFSFKNRPDNLDEVNSFFEDLSPQVAIAVYNILAHNRLKRLNESLKNEKK 193 Query: 333 QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLS 392 L ++ + + Y+S++M D++QQV VA SD+ VLI GETGTGKE IA IH S Sbjct: 194 FLKKEAHGSFDPENFFYKSESMSDVMQQVKNVAASDAPVLITGETGTGKEYIAHCIHHTS 253 Query: 393 PRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLP 452 R D LVK+NC A+ +SL ESELFGH KGAFTGA GRFE+A+ GT+FLDEI +LP Sbjct: 254 LRSDALLVKVNCPALASSLFESELFGHTKGAFTGASQQRIGRFEMANNGTIFLDEIAELP 313 Query: 453 LELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFP 512 + Q K+L VLQ+R ER+G SR+I + R++AATN+DL + + FRSDL+YRLN Sbjct: 314 MPQQAKILHVLQDRCFERVGESRSISADFRIVAATNKDLLHAIHNESFRSDLYYRLNTAQ 373 Query: 513 LELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIE 572 + +P LR+RPEDIP+L + + ++++ ++R + L L + WPGNVREL+N + Sbjct: 374 IHIPSLRERPEDIPVLVINLSDQISKRLHRPSPKYSDKVLESLCQYPWPGNVRELKNFVH 433 Query: 573 RAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLR 632 R L NV+ S + L + + +L P E E+Q IV LR Sbjct: 434 RMFLQRSAE------NVKLSDVKSYLGNSQEIEYNDNNIL-PM----HEMEKQHIVNALR 482 Query: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 G+++G GAA+ L MKR+TL R++R I+ Sbjct: 483 ICKGVLSGENGAASLLQMKRSTLQYRLKRHNIN 515 >UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q938_DESAH Length = 525 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/375 (42%), Positives = 243/375 (64%), Gaps = 8/375 (2%) Query: 292 FSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQS 351 +SE + L+ + + A+A+ N + + L + L +N L +++ GD I S Sbjct: 144 YSEFHSHLITLVHEPFAVAISNILQHQEIQRLNKILSDDNRYLHREMMH--LTGDTIIGS 201 Query: 352 Q-AMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 + ++D+++ V+ VA +DS V+I GETGTGKEVIA AIH S R+D +KINC AIP + Sbjct: 202 KFGLKDVMRMVEHVAPTDSPVMIMGETGTGKEVIANAIHLSSRRKDSAFIKINCGAIPDN 261 Query: 411 LLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIER 470 L++SELFGH+KGAFTGA++ RGRFE A GT+FLDE+G+LPL+ Q +LLRVLQ+ EIER Sbjct: 262 LIDSELFGHEKGAFTGAVSRKRGRFERAHNGTIFLDEVGELPLQAQVRLLRVLQQHEIER 321 Query: 471 LGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAK 530 +GGS TIPV+VR++AAT+++L +MV QFR+DL++RLNVFP+ +PPLR R D+P L Sbjct: 322 VGGSETIPVDVRIVAATHKNLEEMVRTGQFRADLWFRLNVFPIHIPPLRHRTIDLPALTD 381 Query: 531 HFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNV 589 +F +K + + R ++ + ++ +++WPGNVREL+N++ERA++ + + L Sbjct: 382 YFLEKKSMELKIRKRPSLAPGTMEKMQAYEWPGNVRELQNLVERALIFNQMKNDESQLTF 441 Query: 590 RQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLG 649 + P E+ L+ +++ P DE I +VL +TNG V G GAA+ L Sbjct: 442 DPQLINPIPKENMTLKREDGKIIRPL----DEVMANHIQKVLDQTNGKVEGKNGAASLLK 497 Query: 650 MKRTTLLSRMQRLGI 664 + TL RM++L I Sbjct: 498 INPGTLRGRMKKLKI 512 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 163/374 (43%), Positives = 231/374 (61%), Gaps = 29/374 (7%) Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 + ++I++R I A L+E L+ EN L ++ SN DII QS A+E L Sbjct: 125 VFKNISERKRIESALQKALTENRFLKEKLEAENSYLQSEIESNYQ-SDIIGQSPAIEHLQ 183 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 Q+ + A + + +LI GE+GTGKE++ARAIHQ S R+ + LVK+NC AIP L++SELFG Sbjct: 184 TQISLSAPTSANILIQGESGTGKELVARAIHQQSERQAQTLVKLNCGAIPEGLVDSELFG 243 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H+KGAFTGA+ GRFE+A+ GTLFLDE+ +LPL+ Q KLLRVLQE E ER+GG++TI Sbjct: 244 HEKGAFTGAVKQRIGRFELANKGTLFLDEVSELPLDAQVKLLRVLQEGEFERVGGNKTIR 303 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 V+VR+IAA+N++L Q V D FR DL+YRLNVF +++PPLR+R D+P+L+ F +K Sbjct: 304 VDVRIIAASNKNLEQAVHDGSFRLDLYYRLNVFSVQVPPLRERKSDLPILSHFFAKKACA 363 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTL 598 M ++ + +L+ + + WPGN+REL N IE +L G ++H Sbjct: 364 DMGKSFKGLHMPSLKWMSHYQWPGNIRELSNWIEHNAILHTGGLFHIH------------ 411 Query: 599 NEDSALRSSMAQLLHPTTPENDEE--------ERQRIVQVLRETNGIVAGPRGAATRLGM 650 MA H + E+D E E+Q I + L NG +AG GAA L + Sbjct: 412 --------PMAHARHDHSVEHDNESIVSLAEAEKQHIQKALLHCNGRIAGANGAAQLLQL 463 Query: 651 KRTTLLSRMQRLGI 664 +TL S+M++LGI Sbjct: 464 PASTLRSKMKKLGI 477 >UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB78_DESAA Length = 1036 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 178/410 (43%), Positives = 245/410 (59%), Gaps = 23/410 (5%) Query: 260 ASNGCESALLIPLTFGNHTPGALLLAHTSSTL---FSEENCQLLQHIADRIAIAVGNADA 316 +S S++ P+ F T G +L H + L F E + +LL A + A A+ NA+A Sbjct: 644 SSEAARSSICAPIIFKGKTLG--VLYHDNRLLNSAFKESDFELLSFFAAQAAAALDNANA 701 Query: 317 WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 + L+ ++ Q S S ++I +SQA+ +L ++ VAK+ S VLI GE Sbjct: 702 QEEIERLKRAMAQGGRIQSRPSFSRENYKEVIGKSQAVRKMLHLIEQVAKTGSNVLILGE 761 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 TG GKE+ A A+H S RR K VK NC+A+ +L+ SELFGH+KGAFTGA + GRFE Sbjct: 762 TGVGKELAANAVHYHSKRRGKAFVKANCSALTETLINSELFGHEKGAFTGASSRRIGRFE 821 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 +AD GT+FLDEIGDLPL++Q LLRVLQ E ER+GG+ TI + R+IAATNRDL ++ Sbjct: 822 LADKGTIFLDEIGDLPLDVQANLLRVLQSSEFERVGGNETIRSDFRLIAATNRDLERLAA 881 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 D++FR DL+YRLNVFP+ +PPLRDR EDIPLLA+ F + A+ M + I E + +L+ Sbjct: 882 DKKFRQDLYYRLNVFPILVPPLRDRKEDIPLLAEQFIRGFAQKMQIEVKKISREEMNKLL 941 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH-PT 615 + WPGN+REL NVIER ++L+ G P + LH P Sbjct: 942 KYHWPGNIRELANVIERGMILSSG---------------PLFTAPDLEGQTDGHSLHRPH 986 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + E E ER I+ L + N V GP G A L + +TL +RM++LGI Sbjct: 987 SLE--ENERSHILWALEQKNWKVRGPGGVAEFLDINPSTLAARMKKLGIK 1034 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 161/321 (50%), Positives = 219/321 (68%), Gaps = 14/321 (4%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 ++ S+ M +L QV VA + +TVL+ GE+GTGKE++ARAIH SPRR++P V I+CAA Sbjct: 175 LVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAA 234 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP LLESELFGH+KGAFTGAI GRFE+A+GGTLFLDE+G++P +Q KLLRVLQER Sbjct: 235 IPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQER 294 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 + ER+GG T+ V+VRV++ATNR+L QMVE +FR DL+YRLNV P+ LPPLRDRP D+ Sbjct: 295 QFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVE 354 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL--- 583 LA+ F ++A M+RA+ + EAL L WPGNVRELENVIE+A++ G + Sbjct: 355 ELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPR 414 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 +L VR++ P+L S R S+ +L ++ ERQ I+ + G+ A Sbjct: 415 DLPEGVRKAPPAPSLPVPSGDR-SLTDIL-------EDLERQLILAAYEKARGVKA---E 463 Query: 644 AATRLGMKRTTLLSRMQRLGI 664 A LG+K + L ++++ GI Sbjct: 464 TARLLGIKPSALYYKLEKYGI 484 >UniRef50_A6EHC5 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC5_9SPHI Length = 446 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 164/322 (50%), Positives = 216/322 (67%), Gaps = 13/322 (4%) Query: 343 GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402 G D+I S A+ L Q+ VA +D+ VLI GE+GTGKE+IAR +H+LS R + ++ + Sbjct: 136 GFSDMIGGSPALHKLQDQLMAVAPTDTAVLITGESGTGKEIIARHLHRLSGRSKEQMIAV 195 Query: 403 NCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRV 462 NCAA+PA L+ES LFGH+KGAFT A+ T G+FE A GGTLFLDEIG++P +LQ KLLRV Sbjct: 196 NCAALPAELIESILFGHEKGAFTDAVQTKIGKFEEASGGTLFLDEIGEMPFDLQAKLLRV 255 Query: 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522 LQE+EIER+GGSR IPV++R+IAATN L + + +FR DLFYRLNVFPL++P LR+R Sbjct: 256 LQEQEIERVGGSRPIPVDLRIIAATNLQLEREIARGRFRLDLFYRLNVFPLQVPSLRERR 315 Query: 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS 582 DIPLL HF QK A R ID + QLM +DWPGN+RELE+V+ R++LL+R Sbjct: 316 TDIPLLVAHFIQKHATKAGRQIDGTTDGFMAQLMRYDWPGNIRELEHVLLRSILLSRTGM 375 Query: 583 LNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPR 642 L L + + E A+ ++A E ER IV+VL+ +AG Sbjct: 376 LEEGLLELKLDDVS--GESPAVVKTIA-----------ENERDHIVEVLQRCKWKIAGAG 422 Query: 643 GAATRLGMKRTTLLSRMQRLGI 664 GAA LG+ TTL S+M++LGI Sbjct: 423 GAADLLGIPPTTLNSKMRKLGI 444 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 182/445 (40%), Positives = 263/445 (59%), Gaps = 16/445 (3%) Query: 229 LTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS 288 L Q L+TR+ +D DP +L S +++PL G+ G L L Sbjct: 85 LRQALETRRAK-AFTEEDHAHGDGDPFDGVLDLPPGHSCMVVPLCAGDRCYGVLSLDRAE 143 Query: 289 STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDI- 347 + + L++ +A A+ +A+ + E L +++H+ ++ L + LG GD Sbjct: 144 CETYPQPVVDLVEVYGQMLATAIQSAEQRATF----ERLHRQDHEHAKLLEAQLG-GDSE 198 Query: 348 ----IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 +S M DL ++ VA++D+ VLI GETGTGKE +ARAIH+ S R D+P V +N Sbjct: 199 GILETSKSPVMRDLARRARQVAETDTPVLITGETGTGKERLARAIHRWSARADQPFVTLN 258 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAAIPA LLESELFGH KGAFTGA GRF++A GGTL LDE+G+LP +LQ KLLR L Sbjct: 259 CAAIPAGLLESELFGHVKGAFTGATKDRAGRFQMAHGGTLLLDEVGELPFDLQAKLLRAL 318 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QE+ E +G +T+ +VR++AAT+ DL Q + ++FR DL+YRL+VFPL LPPLR+R E Sbjct: 319 QEKTFEPVGSDKTVRADVRILAATHVDLQQAIAQKRFREDLYYRLSVFPLRLPPLRERRE 378 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 D+P L ++ A R + E L +L +++WPGN+REL N +ERA +LTRG L Sbjct: 379 DLPQLCAFLLEEQANRTGRRGMRVTPEGLVRLEAYEWPGNLRELANALERATILTRGTEL 438 Query: 584 ---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAG 640 + + R + ++ L E+ A + + T +R+ I++VL T G V G Sbjct: 439 GPESFDVPTRGAAVVAALPEEPAPAAGGPKRGPVLTLAA--VQREHIMRVLTLTRGRVYG 496 Query: 641 PRGAATRLGMKRTTLLSRMQRLGIS 665 GAA LG+K +TL SRM++LGI+ Sbjct: 497 ANGAAALLGLKPSTLQSRMKKLGIA 521 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 159/325 (48%), Positives = 215/325 (66%), Gaps = 5/325 (1%) Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSM 320 G S + +P+ + G L + S EE+ + L +A I + + R+ Sbjct: 121 KGEISFIGVPVMLAENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFL---NLQRTF 177 Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 Q+ L++EN QL +L +II Q + ++++ + VA S +T L+ GE+GTG Sbjct: 178 ASSQQVLREENSQLRRKLQDRFNRYNIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTG 237 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE++ARAIHQ PR +P +K+NCAA+P +LLESEL GH+KGAFTGA+ +GRFE+ADG Sbjct: 238 KELVARAIHQAGPRAGEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADG 297 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDEIG+LPL LQ KLLRVLQER ERLGGSRTI V+VR+IAATNR L VE+ F Sbjct: 298 GTLFLDEIGELPLALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVF 357 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R+DL+YRLNV P+ LPPLR+R EDIPLL HF ++ RH R + +R+L + W Sbjct: 358 RADLYYRLNVVPVVLPPLRERREDIPLLLDHFLRESNRHNRRRVK-FAAAVIRRLNEYSW 416 Query: 561 PGNVRELENVIERAVLLTRGNSLNL 585 PGNVREL+N++ER V++ G +NL Sbjct: 417 PGNVRELQNLVERLVIMVDGEVVNL 441 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 163/320 (50%), Positives = 217/320 (67%), Gaps = 11/320 (3%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +I+ S M+++ + VA S +TVLI GETG GKE+IA AIHQ S R ++ +V+INCA Sbjct: 351 EIVGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQASDRAERQMVRINCA 410 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 AIPA+L+ESELFGH+KG+FTGA + G+FE+AD T+FLDEIG+L L+LQ KLLRVLQE Sbjct: 411 AIPANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELSLDLQVKLLRVLQE 470 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 +E ER+GGS TI V+VRVIAATNR+L VE +FR DL+YRLNVFP+ LP LRDR DI Sbjct: 471 KEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFPISLPSLRDRRADI 530 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 PLLA F ++ + I + + +M + WPGN+RELE++IER V+LT G +L Sbjct: 531 PLLANFFLERYKMKSGKKISGFSQKVMSAMMKYRWPGNIRELEHLIERQVILTEG-TLIR 589 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 L++ P ++ A S Q T +N ER I VLR NG ++G GAA Sbjct: 590 DLDI------PAAHQVMATDGS-GQTEIKTIAQN---ERDHIFSVLRLCNGKISGKNGAA 639 Query: 646 TRLGMKRTTLLSRMQRLGIS 665 LG+ TTL S++++LG+S Sbjct: 640 KLLGVPATTLNSKIKKLGLS 659 >UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P9_DESAA Length = 514 Score = 300 bits (769), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 172/430 (40%), Positives = 257/430 (59%), Gaps = 14/430 (3%) Query: 237 QPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEEN 296 + L RAD L + +L + +G S +++ L+ G+ G + + F E+ Sbjct: 88 EEVLLDRADKGALGKH--MLKIAGLSGIRSLMMMRLSLGSKEVGVIAFEARGESRFRREH 145 Query: 297 CQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMED 356 L+ + A+A+ N+ + + +L+ L +N L ++LLS +II ++ Sbjct: 146 LHRLRLLQSPFAVAISNSRRYIELLELKNLLADDNKYLQQELLSQKS-DEIIGADFGLKH 204 Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 ++QQV+ VA S VL+ GETG GKEVIA AIH+ S RR++P +K+NC AI +L++SEL Sbjct: 205 VMQQVNKVAPLSSPVLLMGETGVGKEVIANAIHKYSSRRNEPFIKVNCGAISETLIDSEL 264 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FGH +GAFTGA RGRFE A G++FLDEIG+LP Q +LLRVLQE E E +G ++T Sbjct: 265 FGHVRGAFTGAFENKRGRFERAHQGSIFLDEIGELPKAAQLRLLRVLQEMEFEPVGSAKT 324 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 I V+ RVIAATNR+L MV + FR DL++RL VFP+ +PPLR+R DIP L ++F K Sbjct: 325 IKVDARVIAATNRNLEDMVAEGSFRKDLYFRLKVFPIYIPPLRERACDIPALTQYFMHKK 384 Query: 537 ARHMNRA-IDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL-HLNVRQSRL 594 R M A ++ A+++L +++WPGNVRELEN +ERA++++ G +L+ + R Sbjct: 385 YREMGFAEYPSLAPGAVKRLEAYEWPGNVRELENAVERAMIVSGGKTLHFDDSGFEKPRC 444 Query: 595 LPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTT 654 +P A S A L DE I+++L T G + G GAA +G+ T Sbjct: 445 VPEEAPHDA-EDSPAML--------DEVISSHIIKMLHRTKGKINGEDGAARAMGVNPAT 495 Query: 655 LLSRMQRLGI 664 L ++M++LGI Sbjct: 496 LRNKMRKLGI 505 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 300 bits (769), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 231/378 (61%), Gaps = 25/378 (6%) Query: 295 ENCQLLQHIADRIAIAVG-----NADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIY 349 ++ +LL +A IA AV N D R L+ EN +L +L +II Sbjct: 193 QDAELLAMVASLIAPAVELYLIENVDKVR--------LETENRRLKSELKQRFRPANIIG 244 Query: 350 QSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPA 409 S+ M+++ V VA + +TVL+ GE+G GKE++A A+H SP D P +K NCAA+P Sbjct: 245 NSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASALHYNSPVADGPFIKANCAALPE 304 Query: 410 SLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIE 469 +L ESELFGH++GAFT AI TH+G FE A GGT+FLDE+G+L L Q KLLRVLQER E Sbjct: 305 ALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEVGELSLPTQAKLLRVLQERTFE 364 Query: 470 RLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLA 529 R+GG++ + V+VR+IAATNR+L +MV + FR DLFYRLNVFP+ +PPLRDR D+ LA Sbjct: 365 RVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVFPITIPPLRDRGSDVITLA 424 Query: 530 KHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNV 589 HF + + + I I T A+ LMS+ WPGNVRELENVIER+V+L ++ + Sbjct: 425 DHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGNVRELENVIERSVILAEEGVIHGY--- 481 Query: 590 RQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLG 649 L P+L + + + L E + IV+ L+ +NG V AAT LG Sbjct: 482 ---DLPPSLQTPTETGTGFSGTLEDRV---TAVEYEMIVEALKASNGNVG---QAATTLG 532 Query: 650 MKRTTLLSRMQRLGISVR 667 + R L RM+R G++ + Sbjct: 533 LTRRMLGLRMERHGLTYK 550 >UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF2_9DELT Length = 554 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 168/393 (42%), Positives = 241/393 (61%), Gaps = 17/393 (4%) Query: 280 GALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL 339 G LLL +++E+ +++ + ++A+ NA + L+ L+ N L +L Sbjct: 171 GLLLLVAEGKNRYTKEHARIMSSLNKPFSVALANALQYEEAIQLKNMLEDYNRDLRSELS 230 Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 I+ + +++ V VA +S VL+ GETGTGKE+ A A+H S R D P Sbjct: 231 GLSADNRIVGAEFGLRQVMRMVRQVAPLESPVLLQGETGTGKEIFANALHAASLRSDGPF 290 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 +K+NC +P SL++SELFGH+KGAFTGAI+ +RGRFE AD GT+FLDEIG+LPL +Q KL Sbjct: 291 IKVNCGGLPESLVDSELFGHEKGAFTGAISRNRGRFERADKGTIFLDEIGELPLNIQAKL 350 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LRVLQ+ EIER+GGSRTIPV+VR+I+AT+R+L QMV+ +FR DL++RLNVFP+ +PPLR Sbjct: 351 LRVLQQNEIERVGGSRTIPVDVRIISATHRNLEQMVQRGEFREDLWFRLNVFPIMIPPLR 410 Query: 520 DRPEDIPLLAKHFTQKMARHMN--RAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLL 577 RP+D+P L H + R M R I IP+ + +L WPGNVREL+N++ER ++ Sbjct: 411 QRPQDLPALLDHLVSRKCREMKITREI-RIPSGTMDRLKKRAWPGNVRELQNLVERTLIQ 469 Query: 578 TRGNS-----LNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLR 632 ++ LNL L V + + T E S Q+L +E + I + L Sbjct: 470 AHADNPDSAVLNLDLAVSGQKSIETNLETSG----NTQVL-----TFEEAAARHIKKALE 520 Query: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 G + GP GAA LG+ +TL +M++L IS Sbjct: 521 VARGKITGPGGAAEILGLNPSTLRGKMRKLNIS 553 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 154/354 (43%), Positives = 233/354 (65%), Gaps = 20/354 (5%) Query: 316 AWRSMTDLQE---SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVL 372 +++ LQE S +++ L+++ I + +S+A+ L + +A +DSTVL Sbjct: 163 SYKLFGILQEEKASWEEQRQLLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVL 222 Query: 373 ICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR 432 + GE+G GK +IA+AIH LS R+DKP + +NCAAIP +LLE+ELFG++KGAFTGA+++ + Sbjct: 223 LLGESGVGKTLIAKAIHTLSERKDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKK 282 Query: 433 GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLW 492 G+FE+A+GGT+FLDEIG+LPL+ Q KLLRV+QE+E+E+LG ++I VNVRVIA+TN+DL Sbjct: 283 GKFELANGGTIFLDEIGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLA 342 Query: 493 QMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEAL 552 MV +FR DL+YRLNV P+ +P LR+R EDIPLL KHF K +H + I+ I EA+ Sbjct: 343 SMVARGEFREDLYYRLNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHIN-IEKEAM 401 Query: 553 RQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLL 612 L++++WPGN+RELEN+IER V++ + ++ LL T + L++ + ++ Sbjct: 402 EALVNYNWPGNIRELENLIERLVVINNKDI------TKEDVLLATKINSNKLQTDIPSII 455 Query: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 T E++ I + L E G V AA LG+ L R+++ I + Sbjct: 456 EST-------EKEAIKKAL-EKCGYVKSK--AAKILGLTLRQLDYRIKKYNIPI 499 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 176/448 (39%), Positives = 263/448 (58%), Gaps = 38/448 (8%) Query: 251 QRDPLLL-LLASNGCE---SALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIAD 305 Q++P+ L L N + S + +P+ N T G L + S ++S + +L+ IA Sbjct: 102 QKEPMFLNKLGRNAKKEEISFIAVPIKHQNQTYGVLAVDKVVSKMYSITTDVDILKMIAT 161 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA-------MEDLL 358 +A + + T E++QQE ++ E+ L +G YQ + M +L Sbjct: 162 LMASFLHKVQFF---TSEMEAIQQEKSRIEEEKLKLIGEVTQKYQYEGLVGSGRLMRKVL 218 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 +V +V SDS VLI GE+GTGKEV+A+ IH S RR KP V +NCAAIP L+ESELFG Sbjct: 219 DKVQMVTASDSAVLIRGESGTGKEVVAKTIHYNSNRRKKPFVAVNCAAIPGELIESELFG 278 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 + KGAFTGA +G+FE ADGGT+FLDEIGD+P+E Q KLLRVLQ++ +E+LGG++ + Sbjct: 279 YSKGAFTGAAGEKKGKFEQADGGTIFLDEIGDMPMEAQSKLLRVLQDKVVEKLGGTKPVQ 338 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 V+VR++AATN++L V+ +FR DL+YRLNVF + LPPLR R EDIP +A+H + +++ Sbjct: 339 VDVRILAATNKNLEAAVQSGEFRLDLYYRLNVFAIFLPPLRKRKEDIPEIAQHILKNLSK 398 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL-HLN-VRQSRLLP 596 N+ P EA+ LM+ ++PGN+RELEN +ER+ G + H++ +R + Sbjct: 399 RYNKNYTISP-EAVTALMNCNYPGNIRELENCLERSAFTAGGGEIKTKHISCMRGEMCMS 457 Query: 597 TLNEDSALRSSMAQLLHPTT---PENDE------------EERQRIVQVLRETNGIVAGP 641 E+ SS A + P T P+ND +ER+R+VQ L + + A Sbjct: 458 HFMEEQLSGSSTA--ITPQTGGIPDNDYSEADNELISGNMDERERVVQALEKAGWVQA-- 513 Query: 642 RGAATRLGMKRTTLLSRMQRLGISVREV 669 AA L M + R+++ I V+++ Sbjct: 514 -KAARMLDMTVRQMNYRIKKFNIKVKKI 540 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 174/398 (43%), Positives = 231/398 (58%), Gaps = 33/398 (8%) Query: 303 IADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 AD ++ AV NA ++ + L+ +L+ EN L ++ I+ S + L+QVD Sbjct: 204 FADSLSAAVVNARSFEEIQHLRRALELENEHLRGEVRRARAPHSIVGDSPPLRRALEQVD 263 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 +VA +D+TVL+ GE+GTGKE++A+AIH S R PLV++NC+AIP L ESE FGH KG Sbjct: 264 MVAPTDATVLLLGESGTGKELVAQAIHDRSQRAAAPLVRVNCSAIPRELFESEFFGHVKG 323 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 AFTGA+ GRF++ADGGTLFLDE+G++PLELQ KLLRVLQE ER+G R+ V+VR Sbjct: 324 AFTGALRDRVGRFQLADGGTLFLDEVGEIPLELQGKLLRVLQEGVFERVGEERSRSVDVR 383 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 +IAATNRDL VE +FR DLF+RL+VFP+ LPPLR R +DIPLLA+HF + R +N Sbjct: 384 IIAATNRDLRADVEHGRFRQDLFFRLSVFPVALPPLRARRDDIPLLARHFVRASCRRLNL 443 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVR------------ 590 I + +L S+ WPGNVREL+NVIER V++ G L L L Sbjct: 444 PEPRIAHRQMAELQSYPWPGNVRELQNVIERGVIMAEGGRLVLDLPPEGGMQAVSPGAAF 503 Query: 591 ------------QSRLLPTLNEDSALRSSMAQLLHPTTPEND---------EEERQRIVQ 629 + P ++ A P+ E +R I + Sbjct: 504 GMPGGASPVEGGGAHDAPWGTGETGSAGKTADFGQTGAPDPAGIISEAHWRELQRANIER 563 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 L G V GP GAA LG+ TTL SRM+ LG+ R Sbjct: 564 ALTAAGGRVHGPGGAAELLGLPPTTLQSRMKTLGLRGR 601 >UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LPT8_SYNAS Length = 645 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 159/357 (44%), Positives = 230/357 (64%), Gaps = 10/357 (2%) Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 A+ + L+E L+ EN L E++ G G+II S+A+++ + + VA++ TVL+ G Sbjct: 297 AYEEIQALKEKLEAENTYLREEVGLQHGAGEIIGDSEAIKNTMHRALQVARTSVTVLLTG 356 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 ETGTGK + A +HQ S R DKP V +NCA +P +L+ESELFG +KGAFTG+ GRF Sbjct: 357 ETGTGKGIFAHFLHQNSGRADKPFVHVNCAGLPHNLIESELFGREKGAFTGSTARQIGRF 416 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E+A GGT+FLDEIG+LPLELQ KLLRV+++ + ERLG +I V+ R+I +TNR+L + Sbjct: 417 ELAHGGTIFLDEIGELPLELQAKLLRVIEDGKFERLGSPHSIKVDARIITSTNRNLEDEI 476 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 + +FR DLF+RL+VFP+ +PPLR+R DIPLL + FT K ++ + I IP + ++ L Sbjct: 477 SEGRFREDLFFRLSVFPIIIPPLRERKADIPLLVEFFTHKCSKVHRKNIRHIPAQTMKSL 536 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNL--HLNVRQSRLLPTLNEDSALRSSMAQLLH 613 ++ WPGNVREL NVIERAV++T+G L L L+ R + + + + L Sbjct: 537 ENYGWPGNVRELMNVIERAVIVTQGTELQLAGQLSAHSIRSRKERGIEGSEKPAFKGL-- 594 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 + ER+ I++ L+E + GP GAA RL M +TL +RM++L I E L Sbjct: 595 ------NGVERRHILETLQEAGWKIEGPGGAAQRLEMNPSTLRTRMKKLQIKRPETL 645 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 298 bits (762), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 163/349 (46%), Positives = 222/349 (63%), Gaps = 17/349 (4%) Query: 235 TRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS--STLF 292 +++P HRA + + QR L A G +P+ G G L + + + Sbjct: 101 SQEPAFLHRAFEPEISQR-----LHAFVG------VPIKVGYECIGVLAIYRSERHKGVS 149 Query: 293 SEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQ 352 + +LLQ IA+ + V + + ++ + L QE H+L ++L I ++I S+ Sbjct: 150 FRSDVRLLQMIANLVGQTV---NLHQGISAERNRLLQEKHRLQKELQKRYSIKNVIGNSR 206 Query: 353 AMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLL 412 AM+ + V A +TVL+ GE+GTGKEVIARAIH LSPRRDK V +NCAA+P S+L Sbjct: 207 AMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAIHYLSPRRDKAFVSLNCAALPESIL 266 Query: 413 ESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLG 472 ESELFGH++GAFTGA +GRFE+ADGGTLFLDEIGD+ Q KLLRVLQERE ER+G Sbjct: 267 ESELFGHERGAFTGATQERKGRFELADGGTLFLDEIGDISPAFQAKLLRVLQEREFERVG 326 Query: 473 GSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHF 532 G++T VNVR+IAATNR+L + V +FR+DL+YR+NV + LPPLR+R EDIP L +HF Sbjct: 327 GTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRINVVSIFLPPLRERREDIPALIEHF 386 Query: 533 TQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 + R + P EAL+ ++S WPGNVRELEN +ER + RG+ Sbjct: 387 LARYNAENQRKLTLTP-EALQTMVSCYWPGNVRELENCVERTATMMRGD 434 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 156/331 (47%), Positives = 220/331 (66%), Gaps = 21/331 (6%) Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 S+ GI +II S +M ++ + + VA S++TVLI GE+GTGKE++ARAIH S RR+ P Sbjct: 136 SSTGI-NIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPF 194 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 +K+NCA +P SLLESELFG++KGAFTGA + GRFE+A GT+F DEIG++ L Q KL Sbjct: 195 IKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKL 254 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LR +QE+E +R+GG++TI VNVR++AATNR L Q V + +FR DLF+RLNV +E+PPLR Sbjct: 255 LRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLR 314 Query: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 DR EDIPLL HF K + N+ I EA++ L+ +DWPGNVRELENV+ER++++ R Sbjct: 315 DRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERSIIMAR 374 Query: 580 G-----NSLNLHLNV-RQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 G + L V +Q L L+E+ +L+ ++ + ER+ I++ L E Sbjct: 375 GAIIVPEDIQLGATVSQQPTELEILDENLSLKQIISDV-----------ERKVILKALEE 423 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 N A L + R +L ++M+ LGI Sbjct: 424 NNWCRT---TVAKVLKINRRSLYAKMKELGI 451 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 188/425 (44%), Positives = 253/425 (59%), Gaps = 31/425 (7%) Query: 260 ASNGCESALLIPLTFGNHTPGAL----LLAHTSSTLFSEENCQLLQHIADRIAIAVGNAD 315 AS G + L +PLTF G L + S L +E ++L I+ IA AV Sbjct: 116 ASRGKLAFLAVPLTFQARKVGVLSADCTIEPGSGNL--DEELRVLTTISSIIAQAV---I 170 Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 + + ++ L++ +L L I I +S+ M+ + + V +VAKS +TVLI G Sbjct: 171 LRKQFVEERKKLEERALRLEHHLKDRYSIEGWIGRSRIMQQISESVHLVAKSRATVLIMG 230 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 E+GTGKEV+A+AIH SPR +P V+INCAAIP SLLESELFGH+KGAFTGA + G+F Sbjct: 231 ESGTGKEVVAKAIHFNSPRNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPGKF 290 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E A GTLFLDE+G++ +Q KLLRVLQER +ER+GG++TIPV+VR+IAATNR+L + + Sbjct: 291 EQAHEGTLFLDEVGEISPAVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAI 350 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 QFR DL+YRLNV P+ LPPLR R EDIPLL HF + + R++ P EA+ L Sbjct: 351 RKNQFREDLYYRLNVVPIYLPPLRQRKEDIPLLVNHFLGRFNQENGRSMTISP-EAISAL 409 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPT-------LNEDSALRSSM 608 + DWPGNVRELEN +ER V++T+ +S+++ R L P+ + E A R S Sbjct: 410 IEHDWPGNVRELENTMERLVVMTQADSIDITDVRRTLALFPSTLPHRREVEEKPASRDSG 469 Query: 609 AQ---------LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 + LL P E ER +I+ VL T I AA LG+ L RM Sbjct: 470 KENGSSLKGESLLLPEA--VSELERAKILDVLDRTGWIKT---RAAALLGITPRQLGYRM 524 Query: 660 QRLGI 664 + GI Sbjct: 525 MKYGI 529 >UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing protein n=4 Tax=Proteobacteria RepID=A8ZZQ7_DESOH Length = 684 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 193/562 (34%), Positives = 304/562 (54%), Gaps = 28/562 (4%) Query: 110 SRFTSQDCTLFNWLARIITPVLQSW-LNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHL 168 +R+T L + L + + V+ + L++E + +L E +D + +T + HL Sbjct: 139 NRYTEAHGRLLSGLKKPLQRVMDALILDNETRSPHPKLKEPVKDKNEFFRQVTRRLCGHL 198 Query: 169 DLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH---CACLPRCMPGE 225 DL ++ + + F A V + + + H +P +P + Sbjct: 199 DLQAGVSQCLQYLSRFMP-ADALFVRQREPEFQSERVLAESYGFFHQQTGTLIPLPIPAD 257 Query: 226 SVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE-SALLIPLTFGNHTPGALLL 284 T +T + +R +D L L + G E + +PL GA ++ Sbjct: 258 ------TRRTPGIRIINRPED-----SSALKLYMPIFGSEICCISMPLIHKERPIGAAVV 306 Query: 285 AHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGI 344 ++EE+ QL + D +A+ N R + L+ +++E L+E+L Sbjct: 307 GLEGRARYTEEHMQLFALLHDPFVLALSNNIRHREVIRLKNLVEEEKKDLAEELHCT-AP 365 Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 II S +E +++ +VA DS VL+ GETG GKE+IA IH S R+D PL+K+NC Sbjct: 366 DTIIGGSLGLEKVMENARLVAGQDSPVLLTGETGVGKEMIANFIHWQSSRKDGPLIKVNC 425 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AIP +L++SELFGH+KGAFTGA GRFE A+GGT+FLDEI +LPL Q ++LRVL Sbjct: 426 GAIPDTLVDSELFGHEKGAFTGATRQKLGRFERANGGTIFLDEIAELPLPAQVRMLRVLH 485 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 + IER+GG+ +IPV++R+IAAT+R+L + V+ +FR DL++RLNVFP+ +PPLR R D Sbjct: 486 NKIIERVGGTESIPVDIRIIAATHRNLEERVKAGRFREDLWFRLNVFPIRIPPLRSRTMD 545 Query: 525 IPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 +P L+ HF +K +R + + +A+ +L ++ WPGNVRELENVIER ++L G L Sbjct: 546 VPALSDHFIEKKSRELKIHPTPPLSPDAMARLTAYSWPGNVRELENVIERELILNTGGPL 605 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 N+ + PT E + +L D+ + + +VL +NG + GP G Sbjct: 606 TFQ-NLSPT---PTHEEPAGHDMKTEDIL-----SLDDLFVRHVKKVLVLSNGKINGPGG 656 Query: 644 AATRLGMKRTTLLSRMQRLGIS 665 AA + +K TL +RM++LGI+ Sbjct: 657 AAEMMKIKPNTLRNRMKKLGIA 678 >UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteroidetes RepID=C7PQF7_CHIPD Length = 461 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 153/323 (47%), Positives = 216/323 (66%), Gaps = 13/323 (4%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II +SQ ++ +Q + +VA SD++VLI GE+GTGKE IA IH+LS R KPL+K+NCAA Sbjct: 148 IIGESQRLQQTMQHLSVVAPSDTSVLITGESGTGKEKIADLIHRLSGRASKPLIKVNCAA 207 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +PA L+ES LFGH+KGAF+GA+ H G+FE A GG++FLDEIG++P+++Q KLLRVLQE+ Sbjct: 208 MPAELIESLLFGHEKGAFSGALERHIGKFEQASGGSIFLDEIGEMPVDMQVKLLRVLQEK 267 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 EIER+G + V+VR+I+AT+R+L + V D +FR D +YRLNVFPL LPPLR+R EDIP Sbjct: 268 EIERIGAMHSQKVDVRIISATSRNLEKEVADGRFRMDFYYRLNVFPLHLPPLRERREDIP 327 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 L +F + R++ R + + + L+ + WPGN+RELE++IER+VLL G + Sbjct: 328 ALVDYFLEMHCRNIGRPLVTVTRRVMDSLILYSWPGNIRELEHLIERSVLLCEGPVITQI 387 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 + +P E+ T EN ER+ I+ VLR G + G GAA Sbjct: 388 TLPEKIEYVPVAQEERV----------KTMQEN---EREHIIDVLRRCRGKIFGKGGAAE 434 Query: 647 RLGMKRTTLLSRMQRLGISVREV 669 L M +TL R+++LGI+ E+ Sbjct: 435 LLSMNVSTLNYRIRKLGINKDEL 457 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 158/330 (47%), Positives = 219/330 (66%), Gaps = 18/330 (5%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II S ++++ + +D VA + STVLI GE+GTGKE+IA A+H S RRDKP +KINCAA Sbjct: 137 IIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGASSRRDKPFIKINCAA 196 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP +LLESELFG+++GAFTGA+ + GRFE+AD GTLFLDEIG++P+E+Q KLLR +QE Sbjct: 197 IPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEG 256 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E ER+GG +T V+VR++AATNRDL +E +FR DL+YRL V P+ LP LR+R D+P Sbjct: 257 EFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVP 316 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRG---NSL 583 +LA+HF +K R +N+ I+ I +A+ L + WPGN+RELEN+IER +L G + Sbjct: 317 MLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLIERVLLFADGPLITAR 376 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTP---------ENDEEERQRIVQVLRET 634 +L VRQ + + L S++A + PT + E ER IV+ L ET Sbjct: 377 DLPEPVRQG---TGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEET 433 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 G V AA L + R +L ++M+ G+ Sbjct: 434 GGNVT---RAARLLQISRKSLQTKMKEFGL 460 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 155/341 (45%), Positives = 225/341 (65%), Gaps = 16/341 (4%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Q+SL +EN L + L D++ +S AM+ + + A+S+ST+L+ GE+G+GKEV Sbjct: 123 QQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEV 182 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARA+H SPR P V ++CAA+ SLLESELFGH+KG+FTGAI+ +G+FE A GGTL Sbjct: 183 LARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGTL 242 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDE+GD+ +LQ LLRVL+ER R+GG+ I V+VR+IAATNRDL + + +FR D Sbjct: 243 FLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFRED 302 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNV P+ +PPLR+R EDIPLL ++F ++++ M R I+ + +A+ LM+ DWPGN Sbjct: 303 LFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWPGN 362 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VREL NV+ER ++ G + L LPT E ++ ++A L +E E Sbjct: 363 VRELRNVLERGAVVATGTVIQL-----SDLGLPTRLEAASKPGTLASL--------EEVE 409 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ++ + VL NG V+ +A LG+ R TL ++M++ G+ Sbjct: 410 KRHVAAVLAHANGNVS---QSARILGIDRVTLYNKMRKYGL 447 >UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMY7_DESAA Length = 525 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 161/390 (41%), Positives = 246/390 (63%), Gaps = 14/390 (3%) Query: 280 GALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL 339 G++ +A +++E+ +L + ++AVG + ++ L+ L +++ Sbjct: 136 GSVTVAAHGRDRYTQEDLELFSLLKTPFSMAVGALLLTQEVSKLKSILDDRLELQKKRIT 195 Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 N +II ++Q + D+++ ++++A ++ VLI GETG GKE+IA AIH +SPR+D PL Sbjct: 196 PN----EIIGRNQGLRDVVKMINLIAPQNTPVLINGETGVGKELIANAIHSMSPRKDGPL 251 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 + +NC AIP +L+ESELFGH+ GAFTGA +GRFE A GT+FLDEIG+L ++Q KL Sbjct: 252 IIVNCGAIPQTLVESELFGHEAGAFTGAAERRKGRFERAHHGTIFLDEIGELKPDIQVKL 311 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LRVLQ +EIER+GGS++I VN R+IAAT+R+L +MV + FR DL+YR+NVFP+ +PPLR Sbjct: 312 LRVLQSQEIERVGGSKSIKVNARIIAATHRNLARMVSEGAFREDLYYRINVFPIVVPPLR 371 Query: 520 DRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 R DIP L HF +K +R + + +A+ LM++ WPGNVRELEN+IERA++L Sbjct: 372 TRTNDIPALTDHFIRKKSRDLKIYPAPKLDNKAIYHLMNYHWPGNVRELENIIERALILW 431 Query: 579 RGNSLNL-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGI 637 G +L+ +LN+ ++ E A + + P + I VL T G Sbjct: 432 DGGALSFKNLNIAKT-------EGGAKFGAYKEKSKTPLPL-ETVVADHIENVLALTKGR 483 Query: 638 VAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + GP GAA L + +TL ++M++LGI + Sbjct: 484 INGPNGAAKILDVNPSTLRTKMKKLGIPFK 513 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 140/268 (52%), Positives = 198/268 (73%), Gaps = 3/268 (1%) Query: 320 MTDLQESLQQENHQLSE---QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 M+ L +S Q+ ++ +E QL N +II ++ ++D++ +++ STVLI GE Sbjct: 328 MSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGE 387 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 +GTGKE+IA+AIH S R++KP V++NCA+IP +LLESELFG++KGAFTGA+ + G+F Sbjct: 388 SGTGKELIAKAIHNNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAVQSKPGKFA 447 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 IAD GT+FLDEIGD+PL +Q KLLRVLQEREIE +GG ++VRVIAATNR+L +M+E Sbjct: 448 IADTGTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIE 507 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 D FR DL+YRLNV + LPPLR+R EDIP LA+HF K+ + +++ I I +AL L+ Sbjct: 508 DGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQDALNLLI 567 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLN 584 + WPGN+RELEN++ERA+ L G+ ++ Sbjct: 568 EYSWPGNIRELENIMERAINLCDGDYID 595 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 174/392 (44%), Positives = 240/392 (61%), Gaps = 12/392 (3%) Query: 281 ALLLAHTSSTLFSEENCQLLQHIADR---IAIAVGNADAWRSMTDLQESLQQENHQLSEQ 337 A+L T E NC + + R +A+ G A+ + L++ N L ++ Sbjct: 359 AILAELGKYTPEDELNCGACGYPSCREKAVAVYHGLAENRMCLPYFIAQLEKSNFHLRQE 418 Query: 338 LLSNLG-IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 L + G G ++ S AM+++ + ++ VAK+D+TVLI GE+GTGKE++ARAIH S R + Sbjct: 419 LKAFQGKFGQLVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSE 478 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 P V INCAA+P +LLESELFGH +GAFTGA+ +G FE A+ GT+FLDEIGD+ L LQ Sbjct: 479 APFVSINCAALPETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQ 538 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 KLLRVLQE E R+G +R VNVRV+AATNRDL + V+D FR +L YRLNV + LP Sbjct: 539 SKLLRVLQEGEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLP 598 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 PLR+R +DIPLLA+HF +K + + + ++ EA+ L+ DWPGNVRELENVIERAV+ Sbjct: 599 PLRERRDDIPLLARHFLEKSCQRLGKEVNGFTHEAMDALIRADWPGNVRELENVIERAVI 658 Query: 577 LTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 LT + L RQ R + A M+ E + I+Q L E+ G Sbjct: 659 LTESKRIELGDLPRQFRNMAAGASGWAFTRGMS-----FKEAVAAYESRLILQALEESQG 713 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + A AA LG+KR+TL ++R + R+ Sbjct: 714 VQA---RAAEILGLKRSTLNEMIKRYNLMGRK 742 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 162/358 (45%), Positives = 229/358 (63%), Gaps = 30/358 (8%) Query: 323 LQESLQQENHQLSEQLLSN----LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 + +S+ +E ++SE+ L L +II S ++ + + + +A S +TVLI GETG Sbjct: 174 IHQSIHEEKKRISEEKLYYKEELLKQSEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETG 233 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 TGKE+IA+AIH SPR++KP +K+NCAAIP +LLESELFGH+KGAFT A T +GRFE+A Sbjct: 234 TGKELIAKAIHNYSPRKEKPYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELA 293 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 DGGTLFLDE+GDL L LQ K+LR+LQE+E ER+GGS+TI V+VR++AATNRDL +MV Sbjct: 294 DGGTLFLDEVGDLSLPLQAKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMG 353 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 FR DLFYRLNV P+ PPLRDR +D+ LL+++F ++ + + + P +A L + Sbjct: 354 DFREDLFYRLNVIPIFSPPLRDRGDDVILLSRYFLERFCKRHAKELHLTP-KAEELLKHY 412 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE 618 DWPGN+RELEN IER VLL S++ + + S + +H T E Sbjct: 413 DWPGNIRELENSIERLVLLAPSESID----------------EEVVLSVLPGRVHGYTKE 456 Query: 619 N------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 +E ER I++ L+E +GI AA +LG+ + ++Q+ I + L Sbjct: 457 VKTRADLEELERSAIIKALKECHGI---KLQAAKKLGITNRQIGYKIQKYEIEPEDYL 511 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 294 bits (753), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 155/350 (44%), Positives = 222/350 (63%), Gaps = 18/350 (5%) Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 ++N ++ +L + I ++ S A +LQ VD V +S++T+L+ GE+GTGKE++ARAI Sbjct: 125 KDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAI 184 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H+ R DKP V +NCAAIP LLESE+FGH KGAFTGA+ GRF+ AD GTLFLDE+ Sbjct: 185 HKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEV 244 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 GD+PL LQ K+LR LQER IE +G R V+VRVIAATN++L + V +++FR DL+YRL Sbjct: 245 GDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRL 304 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVFP+ LP LR+R EDI LLA+HF + + I EAL+ + S+ WPGN+REL+ Sbjct: 305 NVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWPGNIRELQ 364 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTL---NEDSALRSSMAQLLHPTTPEN-----D 620 N +ERA ++ G V + + LP + SS A + P P + Sbjct: 365 NCVERATIVATG-------QVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALA 417 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 E E+ I+ L+++NG+ A AA +G+ + R+++LGI V +++ Sbjct: 418 EVEKAYILAALQQSNGVQA---AAAQLIGISERSFWYRLKKLGIQVDKIV 464 >UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis n=4 Tax=Bacillus thuringiensis RepID=C3ICC4_BACTU Length = 693 Score = 294 bits (753), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 146/293 (49%), Positives = 209/293 (71%), Gaps = 13/293 (4%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 ES + +L++ L +G D++ ME L + VAKSDSTVLI GE+GTGKE+I Sbjct: 357 ESELSKYKKLNDSFLEIIGCSDVL-----METLFI-ANKVAKSDSTVLITGESGTGKELI 410 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A+ IH++S R+DKP +++NCAAIP +L+ESELFGH+KGAFTGA++ RG+FE A+ GT+F Sbjct: 411 AKGIHKVSLRKDKPFIRVNCAAIPPNLIESELFGHEKGAFTGALHMRRGKFEQANNGTIF 470 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGDL L+LQ KLLRVLQE+EI R+GG +TI +NVRV+AATN +L +MV DR+FR DL Sbjct: 471 LDEIGDLKLDLQVKLLRVLQEKEIVRVGGDKTIKLNVRVLAATNGNLQKMVHDREFREDL 530 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNV P+ +PPLR+R DI L ++F +N+ I + + L LM ++WPGN+ Sbjct: 531 YYRLNVIPIHIPPLRERKADIQSLIEYFRGHFNTSLNKEIHSYTDDFLHALMKYNWPGNI 590 Query: 565 RELENVIERAVLLTRGNSL-------NLHLNVRQSRLLPTLNEDSALRSSMAQ 610 REL+NVIERA+ L+ + L N+++N +Q+ ++ E++ +M++ Sbjct: 591 RELQNVIERAMNLSENDVLEIGDLPDNINMNSQQNSIINNQIENTETVLTMSE 643 >UniRef50_C7LQX0 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQX0_DESBD Length = 647 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 166/350 (47%), Positives = 225/350 (64%), Gaps = 24/350 (6%) Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L L++EN L +++S ++ + M+++L +V+ VA ++ TVLI GETGTGKE Sbjct: 319 LHGQLEEENSYLRNEVMSCRERKNLHNFGERMQEVLIKVEQVASTECTVLIEGETGTGKE 378 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 V+A+AIHQ SPR + ++ +NCAA+PA+L+ESELFG +KGAFTGA++ GRFE+A G T Sbjct: 379 VLAQAIHQSSPRSHRMMITVNCAALPAALVESELFGREKGAFTGALSRQVGRFELAQGST 438 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDEIG++PLE Q KLLRVLQE E ERLG +TI V+VRV+AA+NRDL V +FR Sbjct: 439 LFLDEIGEMPLETQAKLLRVLQEGEFERLGSPKTIKVDVRVLAASNRDLAVEVSQGRFRR 498 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRLNVFP+ LPPLR+R EDIP L F + M + I I + +L WPG Sbjct: 499 DLYYRLNVFPILLPPLRERREDIPQLVWEFISEFGDRMGKKIRRIAKNDMERLKVHAWPG 558 Query: 563 NVRELENVIERAVLLTRGNSLNL-HL--NVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN 619 N+REL NVIE A+++T+G++L L HL N Q + TL Sbjct: 559 NIRELRNVIEHAMIVTKGDTLELAHLLVNAPQDEPVVTL--------------------- 597 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 +E ER+ I ++L+ V G GAA L + +TL SRM++LGI R V Sbjct: 598 EEMERRHIQRILKVAGNRVRGSGGAAELLAINPSTLNSRMRKLGIKARPV 647 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 150/328 (45%), Positives = 218/328 (66%), Gaps = 20/328 (6%) Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 +II ++ M L +D +AK+ +T L+ GE+G GKE++A AIH S R +KP +K NC Sbjct: 235 ANIIGNTKPMVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNC 294 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AA+P +++ESELFGH+KGAFTGA+ T GRFE+A+ GT+FLDE+G+L L +Q KLLR+LQ Sbjct: 295 AALPENIVESELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQ 354 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 E+E ER+GGS+TI V+VRVIAATNR+L +++ QFR DLFYRLN+FP+ +PPLR+R D Sbjct: 355 EKEFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTD 414 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 I LLA +F +K + + + I T A+ LM + WPGNVREL+N IERAV+L+ N ++ Sbjct: 415 ILLLADYFVEKYNKANQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIH 474 Query: 585 LHLNVRQSRLLPTL----NEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAG 640 + L PTL + + S+ Q L D E++ I++ L+ T G ++ Sbjct: 475 GY------HLPPTLQTAESSGTPYTGSLQQKL-------DAIEKEMIIEALKRTQGNMS- 520 Query: 641 PRGAATRLGMKRTTLLSRMQRLGISVRE 668 AA +LG+ + R+++ I R+ Sbjct: 521 --RAAMQLGLSERIMGLRIKKFNIDYRK 546 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/343 (46%), Positives = 214/343 (62%), Gaps = 25/343 (7%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L +EN + QL +G+++ +S+AM++L ++ VA+ ++ VL+ GETGTGKE++AR Sbjct: 125 LLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVAR 184 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 IH + P V I+CAA+P +LLESELFGH +GAFTGA +G+ E+A GGTLFLD Sbjct: 185 GIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGTLFLD 244 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG+LPL LQ K LR LQE+EI RLG +R V+VR+IAATNRDL + Q+R DLFY Sbjct: 245 EIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWREDLFY 304 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV +E+PPLR+R +DIP L HF K +AI + E + M++DWPGNVRE Sbjct: 305 RLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPGNVRE 364 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND-----E 621 LENVIERAV+L G+S+ + S L P L E SA P D E Sbjct: 365 LENVIERAVVLCMGDSIAM------SCLPPKLQERSA-----------PAPSTDGVNLME 407 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E++ IVQ L +T AA LG+ R L ++M+ G+ Sbjct: 408 MEKRLIVQTLEKTE---QNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 170/353 (48%), Positives = 220/353 (62%), Gaps = 22/353 (6%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 +S+++E L + L ++ G I+ S AM D+ + +A S ++VLI GE+GTGKE+I Sbjct: 123 QSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELI 182 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH S R P +K+NCAA+P SLLESELFGH+KGAFTGA +G FE A+ GTL Sbjct: 183 ARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG++PL LQ KLLR+LQERE ER+GG +TI V++R+IAATNRDL MV++ FR DL Sbjct: 243 LDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 FYRLNV L LPPLRDR EDI LLA HF QK + R I I A+ L +W WPGN+ Sbjct: 303 FYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI 362 Query: 565 RELENVIERAVLLTRGN---SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 REL NVIERAV++ G S +L +RQ P N + P N + Sbjct: 363 RELSNVIERAVVMNSGPIIFSEDLPPQIRQ----PVCNAGEVKTA-------PVGERNLK 411 Query: 622 EERQR-----IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 EE +R I++VL + G A LG+ R L+ ++Q GI +V Sbjct: 412 EEIKRVEKRIIMEVLEQQEG---NRTRTALMLGISRRALMYKLQEYGIDPADV 461 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 155/328 (47%), Positives = 219/328 (66%), Gaps = 14/328 (4%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II QS ++ +L +D ++K+D+T LI GE+GTGKE++A+ IHQ S R +KP + +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP+ LLESELFGH+KGAFTGA N GRFE+A+ GT+FLDEIGD+PL LQ K+LRV+QE+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 ER+GG+R I VNVR+IAATN+DL V++ +FR DLF+RLNV P+ +PPLR+R EDIP Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LL ++F K + ++ P E ++ +++ WPGNVRELEN+IER +L G ++N+ Sbjct: 182 LLCEYFINKFSHKFGYSLQIKP-EVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINIK 240 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND------EEERQRIVQVLRETNGIVAG 640 + R E+S + + L+P + D E E++ I+ L I + Sbjct: 241 DIPERIR----FGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKS- 295 Query: 641 PRGAATRLGMKRTTLLSRMQRLGISVRE 668 AA L + RTTL+ +M+RL I E Sbjct: 296 --RAAKYLNINRTTLIEKMKRLNIKDNE 321 >UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZC1_DESOH Length = 926 Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 159/322 (49%), Positives = 214/322 (66%), Gaps = 14/322 (4%) Query: 343 GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402 G +I+ +S ++ +L QVD VA +DSTVLI GETG GKE++AR IHQ S R D PL+ + Sbjct: 615 GTVEIVGESSRIKAVLTQVDQVAPTDSTVLILGETGVGKELVARRIHQQSRRCDMPLIVV 674 Query: 403 NCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRV 462 + AIP L+ESELFGH+KGAFTGA +G E+A GTLF+DE+G++P +Q KLLR Sbjct: 675 DPTAIPEGLVESELFGHEKGAFTGADRQKKGLLELAHQGTLFIDEVGEIPKSIQVKLLRA 734 Query: 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522 LQE+ I+RLGG++ + + R+IAATNRDL V +FR DL+YRLNV P+ +PPLR+R Sbjct: 735 LQEKTIQRLGGTKPLFSDFRLIAATNRDLAGQVAAGRFREDLYYRLNVIPITVPPLRERK 794 Query: 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS 582 +DI LLA F ++ + NR + E ++L ++ WPGNVRELENVIER VLL+ G+ Sbjct: 795 QDIVLLAACFLRRHSLRHNRPAMVLSPEVQQRLCAYPWPGNVRELENVIERGVLLSTGDH 854 Query: 583 LNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPR 642 L L L +R P + + L P DE +R+ I VL +T G +AGP Sbjct: 855 LELDLPAGHTR--PGADPFTDL------------PTLDELQRRYIHHVLEKTGGKIAGPD 900 Query: 643 GAATRLGMKRTTLLSRMQRLGI 664 GAA LGMKRT+L +RM+RL + Sbjct: 901 GAAKILGMKRTSLYNRMKRLNV 922 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 154/341 (45%), Positives = 215/341 (63%), Gaps = 12/341 (3%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L+ EN +L L +II S+ M+++ + + VA + +TVLI GE+G GKE++A Sbjct: 199 LENENRRLKHALKERFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVAN 258 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH SP + LV NCA +P +L ESELFGH+KG+FTGA+ H+G FE ADGGT+FLD Sbjct: 259 AIHYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLD 318 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 E+G+L +Q KL+RVLQ R ER+GGS+ + V+VR+IAATNR+L +MVE FR DL+Y Sbjct: 319 EVGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYY 378 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNVFP+ +PPLR+R D+ LA HF +R + + I T AL LMS+ WPGNVRE Sbjct: 379 RLNVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRE 438 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 LENV+ERAV+L+ + ++ + L P+L ++ L E + Sbjct: 439 LENVMERAVILSDDDVIHSY------NLPPSLQTSKESGTAFGLTLEEKI---KAVECEM 489 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 IV+ L+ ++G + AA LG+ R L RM+R GIS + Sbjct: 490 IVEALKNSSGHIG---EAAKELGLARRMLGVRMERYGISYK 527 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 157/342 (45%), Positives = 220/342 (64%), Gaps = 16/342 (4%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 +L++EN +L L +I+ +S AM+++ ++ V S +TVL+ GE+G GK++IA Sbjct: 120 ALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIA 179 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 RAIH SPR+D+PLVKINC AIP +L+ESELFG++KGAFTGA T G+FE AD GT+FL Sbjct: 180 RAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFL 239 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+P +Q KLLRVLQERE ERLG + T ++VR++AATN+DL +E FR DL+ Sbjct: 240 DEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLY 299 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNV PL +PPLR+R DIP LA HF K+A +++I + +LM++ WPGNVR Sbjct: 300 YRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNVR 359 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN---DEE 622 ELENVIER++++ G L+ + +SA R + PE D+ Sbjct: 360 ELENVIERSLVMATGTQLDAD----------DIKLESAPRPRAQGNDNHFLPEGLSLDQY 409 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E++ I + LR +G AA LG+ R L R+ ++G+ Sbjct: 410 EQEIIREALRRADG---NKSQAARLLGLTRNALRYRLTQMGL 448 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 155/346 (44%), Positives = 222/346 (64%), Gaps = 16/346 (4%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 SLQ+EN L + L G ++ S+ M+ + ++ VAKSDSTV+I GE+GTGKE++A Sbjct: 134 SLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKELVA 193 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 RAIH S R + PL+ +NC AIP LLESELFGH+KGAFTGAI GRFE+A GG++FL Sbjct: 194 RAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGGSIFL 253 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+ LQ K+LRV+QE++ ER+GG +TI +VR+IAAT+++L V +++FR DLF Sbjct: 254 DEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFREDLF 313 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YR+NV P+ LP LR+R DI +LA HF QK A+ + + EA+ ++ + WPGNVR Sbjct: 314 YRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWPGNVR 373 Query: 566 ELENVIERAVLLTRGNSLNLH---LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND-- 620 ELEN+IE V++ + L +RQ + E + + Q+ ND Sbjct: 374 ELENLIEMLVVMKEDGEIKLEDLPSKIRQFK-----KETQSFKEY--QIPEEGIDFNDVV 426 Query: 621 -EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + E+ +++ L +TNG+ AA L + RTTL+ +++RL IS Sbjct: 427 YQFEKNILLKALAKTNGV---KNRAAKLLNLNRTTLVEKLKRLNIS 469 >UniRef50_C7PDE5 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDE5_CHIPD Length = 651 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 145/302 (48%), Positives = 202/302 (66%), Gaps = 9/302 (2%) Query: 364 VAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGA 423 VA +++VLI GE+GTGKE +A+AIH LSPR++ P + +NCAAIP +L+ESELFGH+KGA Sbjct: 353 VAFYNTSVLILGESGTGKEKLAQAIHLLSPRKNAPFITVNCAAIPVALIESELFGHEKGA 412 Query: 424 FTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRV 483 FTGAI +G+FE ADGGT+FLDEIG+L E+Q K+LR LQE+EI+ +GG+ VNVRV Sbjct: 413 FTGAIEKRKGKFEQADGGTIFLDEIGELSPEMQVKILRFLQEKEIQCIGGNSLTKVNVRV 472 Query: 484 IAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA 543 IAATNR+L + V FR DL+YR+NVFP+ LP LR+R DI L+ +F +K N+ Sbjct: 473 IAATNRNLEKEVAAENFRLDLYYRINVFPITLPSLRERRSDIKELSIYFAEKFCSEFNKP 532 Query: 544 IDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS-LNLHLNVRQSRLLPTLNEDS 602 I T + +++++DWPGN+RELENVIE++ +L G S L L + +P Sbjct: 533 FHGIVTSMMEEMIAYDWPGNIRELENVIEQSAILNDGKSKLELKRTLTGKATIPV----- 587 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 ++ + E ER+ I+ VL++ +G V G GAA + +K TTL S+M +L Sbjct: 588 ---TTPIKTFEDVKNIQAETEREYIISVLKQADGRVRGANGAAQLMNIKPTTLESKMAKL 644 Query: 663 GI 664 I Sbjct: 645 KI 646 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 160/343 (46%), Positives = 220/343 (64%), Gaps = 12/343 (3%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L EN L +QL +II S M+ + +++ V +DST+LI GE+GTGKE++A+ Sbjct: 136 LVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAK 195 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH RR+KP V INC AIPA LLESELFGH +GAFTGA+ G+F+ A GT+FLD Sbjct: 196 AIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLD 255 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG +PL LQ KLLRVLQE+E+E++G S+ I ++VRVI+ATN +L + VE +FR+DL+Y Sbjct: 256 EIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYY 315 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV P+ LPPLR+R EDI LLA++F QK MN+ + +I A+ L ++ WPGNVRE Sbjct: 316 RLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRE 375 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 LENVIER V LT ++ LP S Q+ P E+ + + Sbjct: 376 LENVIERTVTLTDSIAIG-------KSDLPANISGSCCEDEDPQISCPRLTESGMDMPEV 428 Query: 627 IVQV----LRETNGIVAGPRG-AATRLGMKRTTLLSRMQRLGI 664 I + ++ G+ G + AA+ L +KRTTL+ +++RLGI Sbjct: 429 IAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRC3_9SPHI Length = 657 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 150/309 (48%), Positives = 209/309 (67%), Gaps = 9/309 (2%) Query: 356 DLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESE 415 DL+ QV A +++VLI GE+GTGKE IA+AIH LS R+ P +K+NCAAIPA+L+ESE Sbjct: 350 DLVTQV---APYNTSVLILGESGTGKESIAQAIHSLSVRKTGPFIKVNCAAIPAALIESE 406 Query: 416 LFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSR 475 LFGH+KGAFTGAI +G+FE + GTLFLDEIG++PL++Q +LLRVLQE+EI+ +GG Sbjct: 407 LFGHEKGAFTGAIEKRKGKFEQSHEGTLFLDEIGEMPLDMQVRLLRVLQEKEIDPVGGKS 466 Query: 476 TIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQK 535 V+VRV+AATNR+L + V + +FR DL+YRLNVFP+ LPPLR+R DI L+ + + Sbjct: 467 PKKVDVRVVAATNRNLEREVAEGRFRLDLYYRLNVFPITLPPLRERKSDIQALSVYVANR 526 Query: 536 MARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLL 595 + ++ + I + +L + WPGN+RELENV+ER+V+L G S L ++QS L Sbjct: 527 FCKEFSKDFNGISAGMMDELEGYTWPGNIRELENVLERSVILNDGQS---ELELKQSLLG 583 Query: 596 PTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 T D + L E ER+ ++ VL+ T G++ G GAA L +K TTL Sbjct: 584 TT---DKVPSKVAIETLGDVRRIQRETEREYLISVLKNTKGLIRGANGAAELLHIKPTTL 640 Query: 656 LSRMQRLGI 664 +R+ +LGI Sbjct: 641 EARLAKLGI 649 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 155/335 (46%), Positives = 225/335 (67%), Gaps = 16/335 (4%) Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L E+L G II +S+ M++L + ++A+S STVLI GE+GTGKE++A A+H+ SP Sbjct: 152 LKEELKGRYSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSP 211 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 RR+ P VK+NCAA+ +LESELFGH KGAFTGA+ + GRFE+A GGTLFLDEIG++ Sbjct: 212 RREGPFVKLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISP 271 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 +Q KLLRVLQE E ER+GG++T+ V+VRVIAATNRDL Q +E+ FR DL+YRL V P+ Sbjct: 272 SMQVKLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPV 331 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 LPPLR+R D+PLL + F ++ + + I + +EA++ L+++ +PGN+REL+N+IE Sbjct: 332 TLPPLRERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEH 391 Query: 574 AVLLTRGNSLNL-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE--ERQRIVQV 630 A LL + ++L HL LLP ++ S L +M + EN E++ I Sbjct: 392 AALLCNDSRIDLRHL---PGDLLPAQSQSSFLELAMME-------ENPVRYVEKELIRLA 441 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + E+ G V+ A +L M R+TL R++ + ++ Sbjct: 442 MAESGGNVS---EVARKLSMGRSTLWRRLKEMKLA 473 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 146/260 (56%), Positives = 194/260 (74%), Gaps = 1/260 (0%) Query: 326 SLQQENHQLSEQLL-SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 ++++EN +L L + +II +S+ ++++L+ +D VA +++TVLI GETGTGKE++ Sbjct: 169 AVEEENSRLRRMLAEARRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELV 228 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH S R PLV++NCAA+P +LLESELFGH+KGAFTGA+ RGRFE A GGT+F Sbjct: 229 ARAIHDNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIF 288 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDE+G+L Q KLLRVLQERE + LG SRT+ V+VRVI A+N+DL + V FRSDL Sbjct: 289 LDEVGELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDL 348 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNVFP+ LPPLR+R DI LLA +F K AR +++ + I T A+ LM + WPGNV Sbjct: 349 YYRLNVFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCYHWPGNV 408 Query: 565 RELENVIERAVLLTRGNSLN 584 RELEN IERAVLL GN+++ Sbjct: 409 RELENCIERAVLLAGGNAVD 428 >UniRef50_A7HI74 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Anaeromyxobacter RepID=A7HI74_ANADF Length = 660 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 166/332 (50%), Positives = 215/332 (64%), Gaps = 3/332 (0%) Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L E+L + G +I+ +S A+ LQ V VA +++TVL+ GETGTGKE+ ARAIH S Sbjct: 314 LREELAAEHGFHEILGRSPALRRALQDVTQVAATEATVLLVGETGTGKELFARAIHDRSA 373 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 RR +PLVK+NCAAIPA+L+ESE FGH++GAFTGA GRF +ADGGT+FLDEIG+LPL Sbjct: 374 RRARPLVKVNCAAIPATLIESEFFGHERGAFTGATQRRDGRFALADGGTIFLDEIGELPL 433 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 ELQ KLLRVLQE E E +G SRT V+VRV+AATNRDL + + FR DL+YRL+VFP+ Sbjct: 434 ELQGKLLRVLQEGEFEPVGASRTRRVDVRVVAATNRDLQRAAREGTFRQDLYYRLSVFPI 493 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 +LPPLR+R +D+ LLA +K+A + R + L S+ WPGNVREL NV+ER Sbjct: 494 QLPPLRERGDDVVLLAAAMAEKLAPGLGRRVAPPDAADAAALRSYPWPGNVRELRNVVER 553 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 A++ + LNLH + + P A R L T E ER ++ L Sbjct: 554 AIITSTDGRLNLHRCLPAPAVAPASEPAPATRGDPEVL---TDRRLRELERDNLLAALER 610 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 T V G GAA L + +TL SRM+ LGI+ Sbjct: 611 TRWRVGGKDGAAALLSVSPSTLKSRMKALGIA 642 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 155/315 (49%), Positives = 211/315 (66%), Gaps = 14/315 (4%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 ++ +S AM+ LL ++ +VA SD+TVLI G++GTGKE++ARA+H S R DKPLV +NCAA Sbjct: 141 MVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALHASSARSDKPLVTLNCAA 200 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 + SLLESELFGH+KGAFTGA GRF ADGGTLFLDEIGD+ +Q +LLR +QER Sbjct: 201 LNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQER 260 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E++R+G ++T+ V+VR+IAAT+RDL Q +FR DL+YRLNV +E P LR R EDIP Sbjct: 261 EVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRLNVVTIETPSLRQRREDIP 320 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LLA+HF Q+ A +A+ +A+ L+ + WPGN+RELEN IERAV+L G ++ Sbjct: 321 LLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRELENAIERAVVLLTGEYIS-- 378 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 R LP + A+ AQ + P E E++ I+ L +T G AA Sbjct: 379 -----ERELPLAIANQAMPLMPAQAIQPLV----EVEKEVILAALEKTGG---NKTEAAR 426 Query: 647 RLGMKRTTLLSRMQR 661 +LG+ R TLL+++ R Sbjct: 427 QLGITRKTLLAKLSR 441 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 161/345 (46%), Positives = 222/345 (64%), Gaps = 26/345 (7%) Query: 326 SLQQENHQ-LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 S+Q+ + Q L E+ + L ++++ QAM+ + + VA + +TVLI GE+GTGKE+ Sbjct: 124 SMQERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTGKELA 183 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 AR IH+ SPRRD P V +NCAAIP +LLESELFGH+KGAFTGA +G+FE+A GGTLF Sbjct: 184 ARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASGGTLF 243 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG+LPL LQ K LRVLQER ER+GG+R + +VR+IAATNRDL + V R+FR DL Sbjct: 244 LDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRFREDL 303 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRL+VFP+ LP LRDR + +P+L ++ ++ A R + I +AL + + WPGN+ Sbjct: 304 YYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGWPGNI 363 Query: 565 RELENVIERAVLLTRGNS--LNLHLNVRQ---SRLLPTLNEDSALRSSMAQLLHPTTPEN 619 REL+NVIERAV+L +G L+L VRQ S ++P N +LR Sbjct: 364 RELQNVIERAVILCKGQVTLLDLPGGVRQVTASGVIPKSN--GSLR-------------- 407 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + ER I+ L R AA +LG+ + TL R++ G+ Sbjct: 408 -DRERNDILDALATCGN---NRRLAAEKLGISKRTLQYRLKEYGL 448 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 154/344 (44%), Positives = 222/344 (64%), Gaps = 8/344 (2%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 SL EN L + L G+II S ++ + L+ V V ++DSTVL+ GE+GTGKE+++ Sbjct: 132 SLTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVS 191 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 RAIH S R+ P V +NCAAIP +LLESELFG++KGAFTGA T +GRFE+A GGT FL Sbjct: 192 RAIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFL 251 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEI ++ +Q K+LR+++ +E+ERLGG+ TI V+VR+I ATNRDL QMV++ +FR DL+ Sbjct: 252 DEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLY 311 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YR++VFP+ LP LR+R DI L+KHF + M + + +E + L+ W GN+R Sbjct: 312 YRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNIR 371 Query: 566 ELENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 EL+N+IERAV+L + + +L ++ P LNE+ + +S+ + P D+ Sbjct: 372 ELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDDL 431 Query: 623 ERQRIVQVL-RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 E+Q + + L R N I AA LG+ R T R+Q+ GIS Sbjct: 432 EKQLVAKALERSKNNITK----AAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 157/330 (47%), Positives = 217/330 (65%), Gaps = 21/330 (6%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +I+ QS+AM +L Q+ VA +DSTVLI GE+GTGKE++A +IH+ S R + VKINCA Sbjct: 127 EIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHRHSQRNGRRFVKINCA 186 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 AIP +LLESELFG++KGAFTGA G+FE A+GGT+FLDEIGD+PLE Q K+LRVL+E Sbjct: 187 AIPDTLLESELFGYEKGAFTGAAARKPGKFEQANGGTVFLDEIGDMPLETQAKILRVLEE 246 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 +E++RLGG R IPV+VRV+AATNR++ +MV D FR DLF+RLNVFP++LPPLR+RPEDI Sbjct: 247 KEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNVFPIQLPPLRERPEDI 306 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 P L + F + ++ I A+ L + WPGNVREL N +E ++L G + Sbjct: 307 PFLIEEFMKFSSKE-----STISPPAMHILCAHQWPGNVRELRNAVESSLLF--GKEV-- 357 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND------EEERQRIVQVLRETNGIVA 639 V L P L A+ + L+ D E E+ +V+ L+ ++G+ A Sbjct: 358 ---VEPEHLPPALAGSMAVPTPAGVLISGEDESLDLDFRLQELEKGILVEALKRSDGVQA 414 Query: 640 GPRGAATRLGMKRTTLLSRMQRLGISVREV 669 AA LG+K +L R+++ GI V ++ Sbjct: 415 ---QAARLLGIKERSLWHRVKKYGIDVSQI 441 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 158/374 (42%), Positives = 232/374 (62%), Gaps = 17/374 (4%) Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQEN---HQLSEQLLSNLGIGDIIYQSQAMEDL 357 + + R+ + ++ + + L + L+ +N L L +I +S M+++ Sbjct: 142 KDVTKRVYKEIQYQESQKMLKALFQELEVKNTTIRSLQTSLRERYSFHSLIGKSYLMQNI 201 Query: 358 LQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELF 417 ++ V+++DSTVLI GETGTGKE++ARAIH S R+D LV +NCAA+P +LLESELF Sbjct: 202 YDLIEKVSQTDSTVLITGETGTGKELVARAIHYNSHRKDYNLVAVNCAALPETLLESELF 261 Query: 418 GHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTI 477 GH KG+FTGAI +G+FE+AD GT+FLDEIG+L + Q KLLRVLQER IER+G +TI Sbjct: 262 GHVKGSFTGAIRDKKGKFELADKGTIFLDEIGELSIPTQVKLLRVLQERYIERVGDEKTI 321 Query: 478 PVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMA 537 V++R+IAATN+D+ +++E FR DLFYRLN+ + LP L++R +DIPLL HF +K Sbjct: 322 KVDIRIIAATNQDILELIEKGTFRKDLFYRLNIISIRLPSLKERTDDIPLLVNHFIEKFN 381 Query: 538 RHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL-NLHLNVRQSR--- 593 + I+ I ALR+L+++ WPGN+RELE VIE+AVLL ++ N+ L S Sbjct: 382 IRFKKNINGISPNALRKLLAYSWPGNIRELEGVIEKAVLLEESETIENIELPTDHSATTN 441 Query: 594 -LLPT-LNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMK 651 LP LN + S D ER+ V V ++ +G + G A T G+ Sbjct: 442 LCLPKPLNAGPDISS-----YEDLQKRLDMLEREYFVSVFQKHHGRI-GSIAACT--GLN 493 Query: 652 RTTLLSRMQRLGIS 665 R T+L++M++ + Sbjct: 494 RRTILNKMKKFSLK 507 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 158/387 (40%), Positives = 239/387 (61%), Gaps = 24/387 (6%) Query: 294 EENCQLLQHIADRIAI----AVGNADAWRSM------TDLQE--SLQQENHQLSEQLLSN 341 + C L++ I + AV + D ++M TD+ E L ++ QL+ L Sbjct: 84 KRKCHLMRKDGSYITVLKTAAVLSDDQGQTMGAVEIVTDISEMDRLDRQLRQLTRTLDEE 143 Query: 342 LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 I+ S+ M++L + V+ A+SD V ICGE+GTGKE++A+AIH LSPR ++P ++ Sbjct: 144 SSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQ 203 Query: 402 INCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 +NCAA+ SLLESELFGH KGAFTGA+ +GRFE A G +FLDEIGDLP+ +Q KLLR Sbjct: 204 VNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLR 263 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 VL+ + ER+G +RTI V++R I ATN++L ++ FR DLFYR+NV P+ LPPLR+R Sbjct: 264 VLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRER 323 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 ED+P L F ++++R + I + EA+R M + WPGNVREL++ +E + +L G+ Sbjct: 324 KEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGD 383 Query: 582 SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN-DEEERQRIVQVLRETNGIVAG 640 + +S LP +D A L P EN + ++Q +++ L++++G Sbjct: 384 RI-------RSENLPEYLKDGG-NDFQAVDLPPAPAENLQQRQKQELIEALKQSSG---N 432 Query: 641 PRGAATRLGMKRTTLLSRMQRLGISVR 667 AA LG+ R T+L+RM++ GI ++ Sbjct: 433 KSQAARLLGINRVTVLNRMRKYGIDLQ 459 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 146/274 (53%), Positives = 191/274 (69%), Gaps = 2/274 (0%) Query: 326 SLQQENHQLSEQLLSNLGIGD-IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 +L +EN L QL D II+ SQ M L VA S +TVL+ GE+GTGKE++ Sbjct: 123 TLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKELL 182 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 AR IHQLSPR +P++ +NC A+P SL+ESELFGH+KGAFTGA + GRFE ADGGTLF Sbjct: 183 ARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTLF 242 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG+L + +Q KLLR LQERE +R+GG+ I +VR+I+ATNRDL MV++ +FR DL Sbjct: 243 LDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFREDL 302 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNV + +PPLR+R EDIP L HF ++ A + I I +EA LM +D+PGNV Sbjct: 303 YYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPGNV 362 Query: 565 RELENVIERAVLLTRGNSLNLH-LNVRQSRLLPT 597 RELEN+IERAV++ R + + L R+ L+ T Sbjct: 363 RELENIIERAVVIARNEIIYMEDLPFREDTLVAT 396 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 165/400 (41%), Positives = 249/400 (62%), Gaps = 29/400 (7%) Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 E +++PL + + GA+L + +S ++ +L I++ + +A L Sbjct: 354 EKQVVVPLYYEDILCGAMLASCSSKCKCDSDSMEL-------ISLVLSHASGTIRRAILH 406 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 Q+E +L + + + G +I + M+ + + + VA +D TVLI GE+GTGKE++ Sbjct: 407 ---QEEIKKLKQGVSESAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELV 463 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A+AIH S RRD P V INC+A PA+LLESELFGH+KGAFTGAI GRFE A GGT+F Sbjct: 464 AKAIHARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGTVF 523 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEI ++ L Q KLLRVLQ ++ ERLGG ++I V+VR++AATN+DL + V+ +FR DL Sbjct: 524 LDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDL 583 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRL+V P+ LPPLR+R D LLA+HF ++ A ++ I+ I + A+R L+ + WPGNV Sbjct: 584 YYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMRALLDYSWPGNV 643 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 RELENV+E+AV+L +G ++ L ED + A+ T E+ +E+ Sbjct: 644 RELENVMEQAVVLCKGETIAL--------------EDLPDKLQGARPARRKTIED--QEK 687 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +++ L E G + AA RLG+ R+TL +++++ GI Sbjct: 688 NLLLETL-EACGW--NKKMAAERLGIGRSTLYAKLKKHGI 724 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 149/329 (45%), Positives = 213/329 (64%), Gaps = 26/329 (7%) Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 + I QS+ M+D+ + + V SD TVLI GE+GTGKEV+AR IH S R +P +KIN Sbjct: 140 VDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKIN 199 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CA IP L+ESELFGH+KG+FTGA++ G+FEIA G +FLDEIG+LPL Q KLLRVL Sbjct: 200 CATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVL 259 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QE+E ER+GG+++I V+VR++AATNR+L MV++ +FR DL+YRLNV ++LPPLR+R E Sbjct: 260 QEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKE 319 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 DI LL +F +K AR N+ I I EA+ + WPGNVRE++NV E+AV++ R + L Sbjct: 320 DISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVL 379 Query: 584 -----------NLHLNVR-QSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 N L + +++ N+ +L+ +A++ E+Q I++ L Sbjct: 380 MLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEV-----------EKQVILKSL 428 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 E N + A LG+ R +L ++M+ Sbjct: 429 NENNW---NRQNTAKALGLNRRSLYAKMK 454 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 287 bits (735), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 160/347 (46%), Positives = 228/347 (65%), Gaps = 18/347 (5%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L QE Q S + + + D+I S A+ L +QV +AKS+STVLI GE+GTGKEV+A+ Sbjct: 124 LLQEQEQ-SSRYGTRFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQ 182 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFL 445 +IH+LS R P V INCAAIP +LLESELFG+++GAFTGA + GRFE+A GGTLFL Sbjct: 183 SIHRLSHRNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFL 242 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+PL LQ KLLRVLQER IER+GG+++I V+VR+IAAT++DL M+ + QFR DL+ Sbjct: 243 DEIGDMPLYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLY 302 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +RLNV PL +PPLR+R ED+ L +++ K + + + ++AL+++ + WPGN+R Sbjct: 303 FRLNVIPLYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGNIR 362 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSA-LRSSM-AQLLHPTT----PEN 619 ELEN++E V L G+ + + S L ++ E S R M ++ P T P++ Sbjct: 363 ELENMVEYIVNLEIGDLVTI------SSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKS 416 Query: 620 ----DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 +E E Q I+Q L+ G R AA LG+ TL +++++ Sbjct: 417 LYKINEVEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEKM 463 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 161/344 (46%), Positives = 221/344 (64%), Gaps = 14/344 (4%) Query: 326 SLQQENHQLSEQL-LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 +L++EN +L L S + +II S+ M+++ + VA S++TVLI GETGTGKE++ Sbjct: 168 ALEEENRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELV 227 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH S R PL+++NCAA+P +L+ESELFGH+KGAFTGA++ RGRFE A GGT+F Sbjct: 228 ARAIHDRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIF 287 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDE+G+L Q KLLRV+QE++ + LG SR + V+VR+IAATNR+L + V FR+DL Sbjct: 288 LDEVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADL 347 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNVFP+ LPPLR+R DI LLA +F K + M +++ I L +S WPGNV Sbjct: 348 YYRLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPGNV 407 Query: 565 RELENVIERAVLLTRGNSL-NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 RELEN IERAVLL G+S+ LHL P+L S R + + +E Sbjct: 408 RELENCIERAVLLATGDSIETLHLP-------PSLQIRS--REGEKKESGKFNAMIESQE 458 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 R IV L+E++G AA LG + + ++Q+ GI R Sbjct: 459 RAMIVDALKESHG---NQSQAARILGTTKRIIQYKIQKFGIDPR 499 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 156/334 (46%), Positives = 216/334 (64%), Gaps = 15/334 (4%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II +S +++L ++ VA + +TVLI GE+GTGKE++ARA+H+ S RRD+P +K+NCAA Sbjct: 149 IIGESPPIQELYAILERVADTPTTVLISGESGTGKELVARALHENSGRRDRPFIKVNCAA 208 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP L+ESELFG+++GAFTGA+ + GRFE+A GGTLFLDEIG++P E+Q KLLRVLQE Sbjct: 209 IPKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQES 268 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E ER+GG +TI V+VR++AATNRDL + + FR DLFYRLNV P+ LP LRDR DIP Sbjct: 269 EFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDIP 328 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL--- 583 L HF K + ++I++I EAL +L S WPGN+RELENV+ERA+L G + Sbjct: 329 HLCAHFVAKFNARLKKSIESIEPEALERLASHAWPGNIRELENVVERALLFADGARIRLD 388 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE---------ERQRIVQVLRET 634 +L +R ++ P+TP+ +E ER I + L++T Sbjct: 389 DLPEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIERALKQT 448 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 +G V AA L + R L +M+ L + R+ Sbjct: 449 HGNVT---HAARLLKISRKGLQLKMKELNLRERD 479 >UniRef50_A9G320 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G320_SORC5 Length = 492 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 162/368 (44%), Positives = 222/368 (60%), Gaps = 20/368 (5%) Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 LL+ + +A+A+ + + Q E L E+L +++ AM + Sbjct: 136 LLEAMGRLLAVALRQVQVLGRVAAIARRAQGEKRTLKEELDRVALPREVVAVGPAMRAIF 195 Query: 359 QQ-VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELF 417 QQ V +VA+ D+TVL+ GETGTGKEVIAR IH LS R ++P + +NC A+P L+ES LF Sbjct: 196 QQMVPLVARQDTTVLVRGETGTGKEVIARRIHALSRRAERPFLAVNCGALPEGLVESALF 255 Query: 418 GHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTI 477 GH++GAFTGA H G FE A GGTL LDE+G+LP Q KLLRVLQE EIER+GG + Sbjct: 256 GHERGAFTGATARHLGLFERASGGTLLLDEVGELPRAAQAKLLRVLQEGEIERVGGEGAV 315 Query: 478 PVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMA 537 V+VRVIAAT+R L MV FR DL+YRL VFP+ +PPLRDRPED+ L + +K+A Sbjct: 316 RVSVRVIAATHRPLEDMVASTAFREDLYYRLQVFPIIVPPLRDRPEDLEPLTRVIVEKVA 375 Query: 538 RHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPT 597 R + E++ +L + WPGNVRELENVIER+++++ G+ L L + Sbjct: 376 ASFGRTPPRVSAESMARLRAHGWPGNVRELENVIERSMVMSTGDELILSAPL-------- 427 Query: 598 LNEDSALRSSMAQLLHPTTPENDEEERQRIVQ-VLRETNGIVAGPRGAATRLGMKRTTLL 656 SA + +++ E QR ++ LR G + G GAA LG+K TTL Sbjct: 428 ----SAAPGATGRVM------TYREAAQRCIEDALRAAGGKIYGEDGAAAALGLKPTTLQ 477 Query: 657 SRMQRLGI 664 S+M++LGI Sbjct: 478 SKMRKLGI 485 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 161/352 (45%), Positives = 229/352 (65%), Gaps = 14/352 (3%) Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGD-IIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 ++ D QE + E +L ++ + G + ++ + +M + QV VAK +STVLI GE+ Sbjct: 183 NLEDGQEVVD-ERDELRREVRAKYGFENMVVGHTASMRRVFDQVRRVAKWNSTVLILGES 241 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE+IA AIH SPR +PLV++NCAA+P +LLESELFGH+KGAFTGA+ +GRFE Sbjct: 242 GTGKELIASAIHYNSPRAHQPLVRLNCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQ 301 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 ADGGTLFLDEIG++ Q KLLRVLQE E+ER+GGS+T+ VNVR++AATNRDL VE Sbjct: 302 ADGGTLFLDEIGEISPMFQAKLLRVLQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQ 361 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FR DL+YRLNV + +PPLR+R DIP LA+ K+AR R + + ALR LMS Sbjct: 362 GKFREDLYYRLNVMAIRVPPLRERSADIPELAEFLLDKIARQQGRKLK-LTDSALRLLMS 420 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTP 617 WPGNVRELEN +ER+ +++ +++ R L L+ D+ + +A + Sbjct: 421 HRWPGNVRELENCLERSAIMSEDGTIS-----RDVVSLTGLDHDA---TPLAPVPEVDLA 472 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 ++ ++R+R++ L + + A AA LGM + R+Q L I +R++ Sbjct: 473 DDSLDDRERVIAALEQAGWVQA---KAARLLGMTPRQIAYRVQTLNIHMRKI 521 >UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4F1_9PLAN Length = 533 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 184/470 (39%), Positives = 270/470 (57%), Gaps = 15/470 (3%) Query: 204 SLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNG 263 +L +L+ + A +PR VL + H A D+ + + P LL ++G Sbjct: 55 TLAAVELAGTEQAAMPRSEMAPEVLDGMLAWWHLRRVRHAAADVII-RELPALLPPETSG 113 Query: 264 CESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL 323 + +PL + ++L +F+E + QL +A+ +A+AV N + + L Sbjct: 114 --DVIAVPLACEHGLFAVMILVSRKGVVFTEGHQQLALALAEPLAVAVENDRRLKELVAL 171 Query: 324 QESLQQENHQLSEQLLSNLGIGD----IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 +E ++ EN +L LS LG D I+ + +++++ +VA++D VL+ GETG+ Sbjct: 172 REKVEAENRRL----LSKLGRSDLSETIVGSESGLREVMERATLVARADVPVLLLGETGS 227 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKEVIARA+H+ S R + P +++NC AIPA L++SELFGH+KG+FTGA +G FE AD Sbjct: 228 GKEVIARAVHRGSRRAEGPFLRVNCGAIPAELVDSELFGHEKGSFTGASAIRKGWFERAD 287 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDE G+L Q +LLRVLQ+ ER+GG + + V+VRVIAAT+R+L MV + Sbjct: 288 GGTLFLDECGELTPAAQVRLLRVLQDGTFERVGGEKQLHVDVRVIAATHRNLQGMVREGT 347 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR DL+YRL VFP+ LPPLRDR EDIP +A HF + A E + L+++ Sbjct: 348 FREDLWYRLAVFPVHLPPLRDRREDIPAMAIHFAARAAARYGLRPCNPTEEDMHLLLNYS 407 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN 619 WPGN REL V+ERA +L G+SL++ + LP A R+ A + E Sbjct: 408 WPGNARELGAVMERAAILGNGHSLDVATALGNVPALPAATSPPAQRAPAAVASSSASRET 467 Query: 620 ----DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 DE R+ I L T+G + G RGAA LG+ TL +RM++LGI+ Sbjct: 468 VVTLDEANRRHIQSALAATDGQIEGHRGAAKILGINPHTLRARMRKLGIA 517 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 169/342 (49%), Positives = 215/342 (62%), Gaps = 15/342 (4%) Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 E L +L S G +I+ +S A+ LL + VA S++TVLI GETGTGKE+IARAIH Sbjct: 172 EAAALRAELGSLRGFEEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIH 231 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 + S R PL+K+NCAAI A+L ESE FGH+KGAFTGA GRF++ADGGTLFLDE+G Sbjct: 232 RHSRRSQGPLIKVNCAAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVG 291 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 ++PL+LQ KLLRVLQE E E +G RT+ V+VRVIAAT+RDL QMV + FR DL YRLN Sbjct: 292 EMPLDLQAKLLRVLQEGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLN 351 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VFPL PPLR+R ED+ LLA+ ++AR + + +L + WPGNVRELEN Sbjct: 352 VFPLHAPPLRERGEDVVLLAEAIATRLARQEGATLAPLSPADRARLKAHPWPGNVRELEN 411 Query: 570 VIERAVLLTR----GNSLNLHLNVRQSRL---LPTLNEDSALRSSMAQLLHPTTPENDEE 622 VIERA + G LNL + S + P L D + A++L + Sbjct: 412 VIERAWITGTDTPDGRVLNLVRALPGSEVTPRTPGLAADPDAVFTAAEML--------QM 463 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ER I + L ++G GAA LG+ TL SRM+ LGI Sbjct: 464 ERSNIERALVSCQWKLSGVGGAARLLGLHPNTLASRMKSLGI 505 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/318 (46%), Positives = 212/318 (66%), Gaps = 16/318 (5%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 +I +S M +L VA + + VL+ GE+GTGK V+A+ IH S RRDKP VKINCAA Sbjct: 229 LITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFVKINCAA 288 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP +LLESELFG+ KGAFTGA+ G+ E+ADGGTLFLDEIG+LP LQ KLL ++QE+ Sbjct: 289 IPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQSKLLHLIQEK 348 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E ERLG ++T V+VR+IAATN+DL Q+V++ +FR DL+YRL V +++P LR+R EDIP Sbjct: 349 EFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRERKEDIP 408 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 L +F ++ N+ I I EA+R L+++D+PGN+RELEN+IERAV+L +G + + Sbjct: 409 FLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAVILAKGKFIEVS 468 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 LP D + ++ ++L + + +E+Q+I++VL N AA Sbjct: 469 -------DLP----DEIVYNT--KILTQNDLDEEIDEKQKILRVLESVNW---NKSKAAK 512 Query: 647 RLGMKRTTLLSRMQRLGI 664 L + R TL ++++ G+ Sbjct: 513 ILNIDRVTLWRKLKKYGL 530 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 132/232 (56%), Positives = 183/232 (78%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II S ++D L A++DSTVLI GE+GTGKE++A AIH S R+DKP +++NCAA Sbjct: 231 IIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPFIRVNCAA 290 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP +LLESELFGH++GAFTGA+ G+FE+ADGGT+FLDEIGD+P E+Q KLLRV+QE+ Sbjct: 291 IPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKLLRVIQEK 350 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E ER+GG +TI V+VR+IAATN+DL + +++ FR DL+YRLNV P+ LPPLR+R DIP Sbjct: 351 EFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLRERRGDIP 410 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 LL +HF +K+ + +N+ + + +A++ L+ +DWPGN+RELEN+IER + L+ Sbjct: 411 LLVEHFIEKLNKKLNKNVKKVTKKAMQALIYYDWPGNIRELENIIERCITLS 462 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 164/410 (40%), Positives = 238/410 (58%), Gaps = 31/410 (7%) Query: 268 LLIPLTFGNHTPGA-LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 L +PL+ +T G LL + S FSE LL ++++I + + N L + Sbjct: 1066 LALPLSIRKNTMGVVLLFCKSGSKYFSERIINLLSALSNQIIVIIENI--------LSAN 1117 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L++ ++ + EQL SN +II +S M + + ++ V + +TVL+ G +GTGKE+IAR Sbjct: 1118 LEKSHNIIREQLSSNNIYSNIIGKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIAR 1177 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 A+H S RR+K V C A+P +LLESELFGH KG+FTGA +G FEIADGGT FLD Sbjct: 1178 ALHYSSNRRNKAFVAQYCGALPETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLD 1237 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EI D+ Q KLLR LQE EI+R+G ++T V+VRV+ ATN L + V+ +FR DL+Y Sbjct: 1238 EISDISQSTQSKLLRFLQEGEIKRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYY 1297 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV +++PPL++R DIPLLA HF K + MN+ + EA++ L +DWPGNVR+ Sbjct: 1298 RLNVIRIDVPPLKNRTGDIPLLAIHFLDKYNKRMNKNVMGFTAEAMKVLEQYDWPGNVRQ 1357 Query: 567 LENVIERAVLLTRGNSL--------NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE 618 LEN IERAV L N+ ++ ++ S+ + L+ L+ ++ +L Sbjct: 1358 LENEIERAVTLAEPNTFIKPSDFSEEVYRHIEYSKTIAMLSGKKNLKDAIEEL------- 1410 Query: 619 NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 ER+ I Q L + AA LG+ R L+ +MQR + E Sbjct: 1411 ----ERKLISQSLEK---FQWNQTQAAKELGLSRQGLIKKMQRYNLYREE 1453 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 152/315 (48%), Positives = 211/315 (66%), Gaps = 14/315 (4%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 +I S AM+ LL ++ +VA SD+TVLI G++GTGKE++ARA+H S R DKPLV +NCAA Sbjct: 141 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCAA 200 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 + SLLESELFGH+KGAFTGA GRF ADGGTLFLDEIGD+ +Q +LLR +QER Sbjct: 201 LNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQER 260 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E++R+G ++TI V+V +IAAT+RDL + V +FR DL+YRLNV +E+P LR R EDIP Sbjct: 261 EVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIP 320 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LLA HF ++ A +A+ +A+ L+ +DWPGN+RELEN IERAV+L G ++ Sbjct: 321 LLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYIS-- 378 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 R LP + +++ + + P + E++ I+ L +T G AA Sbjct: 379 -----ERELPLAIAATPIKAENSAEIQPLV----DVEKEVILAALEKTGG---NKTEAAR 426 Query: 647 RLGMKRTTLLSRMQR 661 +LG+ R TLL+++ R Sbjct: 427 QLGITRKTLLAKLSR 441 >UniRef50_C1SI14 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI14_9BACT Length = 507 Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 140/313 (44%), Positives = 205/313 (65%), Gaps = 9/313 (2%) Query: 353 AMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLL 412 + +L + VAK ++VLI GETG GKEV A IH+ S R ++P +K+NC IP +L+ Sbjct: 202 CLHNLFESAKNVAKFSTSVLITGETGVGKEVFANYIHRNSTRNNEPFIKVNCGTIPENLI 261 Query: 413 ESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLG 472 ++ELFGH+KGAFTGA +T +GRFE+AD GTLFLDE+ +LPL Q KLLRV+Q E ERLG Sbjct: 262 DNELFGHEKGAFTGADSTQKGRFELADKGTLFLDELAELPLNCQAKLLRVVQFGEFERLG 321 Query: 473 GSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHF 532 G++TI VNVR+IAATN+DL QM+ED FR DL++R+NVFPL++PP+R+R +DIP L Sbjct: 322 GTKTIKVNVRIIAATNKDLIQMIEDGDFREDLYWRINVFPLKIPPIRERKKDIPDLITCL 381 Query: 533 TQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQ 591 K+ + + I + + +++ +DWPGNVRE+EN +ER ++ G++ + L + Sbjct: 382 IMKICKRLEITEPPVISPDQMEKIIQYDWPGNVREMENFLEREIIQNFGSAQAIELKIS- 440 Query: 592 SRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMK 651 + DS R + D R+ I+++L +T ++G +GAA+ L M Sbjct: 441 -------DLDSTERHKQPDKNAACNKDMDNMMREHILKILEQTKWRISGTKGAASLLKMH 493 Query: 652 RTTLLSRMQRLGI 664 TL RM++LG+ Sbjct: 494 PNTLRHRMKKLGL 506 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 151/316 (47%), Positives = 206/316 (65%), Gaps = 9/316 (2%) Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 + +II +S+ M L + ++ VA SDSTVLI GE+GTGKE++ARAIH LS R DK V +N Sbjct: 141 LNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALN 200 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAAIP LLESELFGH KG+FTGA+ + GRFE+AD GTLFLDEIGD+ LQ KLLRVL Sbjct: 201 CAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVL 260 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 Q RE+E +G +R+ V+VR+IAATN++L MV ++FR DL+YRL+V P+ LPPLR+R Sbjct: 261 QSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGS 320 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 D+PLL F +K R R + + + L ++DWPGNVRELEN++ER V++ + Sbjct: 321 DVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGNVRELENLVERLVIIKTTGVI 380 Query: 584 NLH---LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAG 640 ++H R R L+ + L+ +E E + I+Q L ++ G Sbjct: 381 SIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAV---EEFENRLILQALEKSGG---N 434 Query: 641 PRGAATRLGMKRTTLL 656 + AA L +KRTTL+ Sbjct: 435 KKEAAELLNLKRTTLI 450 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 147/315 (46%), Positives = 211/315 (66%), Gaps = 13/315 (4%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Q+ L+QEN QL +L + I+ S M+++L+ + VA S++TVL+ GE+GTGK + Sbjct: 198 QQRLEQENSQLRRELSEKYRVSSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGKSM 257 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARA+H S R P + +NC+A+P +LLESELFGH++GAFTGA T +GRFE+A+GGTL Sbjct: 258 VARAVHHNSKRAAGPFITVNCSALPETLLESELFGHERGAFTGAHETRKGRFELAEGGTL 317 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG+L +Q KLL V+Q+RE +R+GGSR + +VR+I ATN+DL + V + FR D Sbjct: 318 FLDEIGELSTAVQVKLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFRED 377 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRLNVFP+ LPPLR+R DI LLA+ F +K A ++ I I T A+ L + WPGN Sbjct: 378 LYYRLNVFPIYLPPLRERRTDILLLAEFFLEKFASENDKNIRRISTPAIDLLTQYHWPGN 437 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT--TPENDE 621 VREL+N +ERAVL+ ++ ++ L PTL +LR + P+ T + Sbjct: 438 VRELQNCLERAVLICDEDT------IKSYHLPPTLQSSDSLRE-----VSPSSFTAAVES 486 Query: 622 EERQRIVQVLRETNG 636 ER+ I+ L++T+G Sbjct: 487 FERELIIDALKKTDG 501 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 160/353 (45%), Positives = 221/353 (62%), Gaps = 18/353 (5%) Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 VG + + +T L E L ++L G II QS+ M +L + +VA+S ST Sbjct: 140 VGGVEIFHDVTQLAE--------LKKELKGRYAFGKIIGQSEKMRELFDLLPVVAQSKST 191 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IA AIH+ SPR+D P +K+NCAA+ +LESELFGH +GAFTGA+++ Sbjct: 192 VLIEGESGTGKELIAHAIHENSPRKDGPFIKVNCAALSEGVLESELFGHVRGAFTGAVSS 251 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+A GGTLFLDEIG++ +Q KLLRVLQE E ER+GG++T+ V+VRVIAATNRD Sbjct: 252 KPGRFELASGGTLFLDEIGEISASMQVKLLRVLQEEEFERVGGTKTLKVDVRVIAATNRD 311 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L ++ FR DL+YRL V PL LPPLR+R EDIPLL F + + + + E Sbjct: 312 LKAAIDAGTFRRDLYYRLRVVPLFLPPLRERREDIPLLISSFLSRYNAEFGKNVVGLSQE 371 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A LM+ +PGN+REL+N+IE AVLL+ G ++ + R L P E SS A Sbjct: 372 AQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIGVRELPRD--LAPIPEE-----SSFAD 424 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + + E I + + +T G ++ AA LG+ R+TL +++ +G Sbjct: 425 VALSRSNALRTMEDVMIRKAVEKTQGNMS---QAAKLLGIGRSTLWRKLREMG 474 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 141/333 (42%), Positives = 227/333 (68%), Gaps = 15/333 (4%) Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 Q +N GI I S+ + D++ ++ +A D TVLI GE+G GKEVIA I Q S R++ Sbjct: 165 QFFNNTGI---IGDSEEIRDVIYLINKIAPLDVTVLITGESGVGKEVIANEIFQKSSRKN 221 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 K +K+NCAAIP +LLESELFG++KGAFTGA +G F++ADGGT+FLDEIGD+PLE+Q Sbjct: 222 KQFIKVNCAAIPTNLLESELFGYEKGAFTGADKAKKGLFQLADGGTIFLDEIGDIPLEIQ 281 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 PKLLR LQ++E+ +GG++ ++VR+IAATN+DL Q V++ +FR DL+YRLNVFP+E+P Sbjct: 282 PKLLRALQQKEVVPVGGTQIQKLDVRIIAATNKDLSQQVKEGKFRKDLYYRLNVFPIEIP 341 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 PLR+R DI L ++F ++ + +++ + +EA LM++DWPGNVREL+N+IER ++ Sbjct: 342 PLRERKRDIYALGEYFLKQYNKKYGKSV-VLSSEAYSLLMNYDWPGNVRELQNIIERLII 400 Query: 577 LTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 ++ ++ + + ++ + ++ L + ++ E E++ ++ VL+ T Sbjct: 401 ISDDQTV-----INKDQIEKIMFPNTMLDITKSE--KGLKEIIQEIEKEILIDVLKNT-- 451 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 R AA +L + ++TL+ ++++ GI++ E+ Sbjct: 452 --GTTRKAAKKLKIDQSTLVKKLKKYGINIDEI 482 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 154/321 (47%), Positives = 205/321 (63%), Gaps = 4/321 (1%) Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 G +I S AM+++ + + +A SD TVLI GE+GTGKE++A AIH SPR+ KP VKI+C Sbjct: 137 GTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKIDC 196 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AIP +LLESELFGH+KGAFTGA G+FE+ADGGT+FLDEIGD+ LQ KLLR LQ Sbjct: 197 TAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLLRFLQ 256 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 E+ ER+GG+ T V+VR+IAATN+DL + V+ FR DL+YRLNV ++LPPLR+R ED Sbjct: 257 EKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKED 316 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 I LL +F R + + + L+ ++WPGNVREL NV ERAVL+ RGN + Sbjct: 317 IMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAVLMARGNVIT 376 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 ++ + L A + + + P E ER I++ L E G Sbjct: 377 PE-SLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEEYRG---NKTAV 432 Query: 645 ATRLGMKRTTLLSRMQRLGIS 665 A LGM RTTL ++M+ LGI+ Sbjct: 433 ARALGMSRTTLYAKMKELGIA 453 >UniRef50_C6NYI4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYI4_9GAMM Length = 364 Score = 284 bits (727), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 166/333 (49%), Positives = 219/333 (65%), Gaps = 19/333 (5%) Query: 344 IGDIIYQSQAMEDLLQQVDIV--AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 I +++ +S A +L +++I+ A S +TVL+ GETGTGKEV++RAIH S R KP V Sbjct: 30 ISNVVGESPAWIAVLNEIEILSYAPSSATVLLTGETGTGKEVVSRAIHDSSDRAGKPFVA 89 Query: 402 INCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 INCAA+PA LLES LFGH+KGAFTGA G+FE ADGGTL LDEIG++PL +Q KLLR Sbjct: 90 INCAAVPAELLESVLFGHEKGAFTGAYARSPGKFEQADGGTLLLDEIGEMPLSMQAKLLR 149 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 VLQER+I+R+GG ++PV+VR+IAAT+RDL + + +QFR DL+YRLNV+P+ELP LRDR Sbjct: 150 VLQERKIDRVGGRDSVPVDVRIIAATHRDLQERILKKQFREDLYYRLNVYPIELPALRDR 209 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL--LTR 579 EDIPLL KHFT+++ + + + EA+ L + WPGNVREL N++ER + L R Sbjct: 210 KEDIPLLVKHFTRELRKRGYPEL-SFTDEAMAALQACAWPGNVRELVNLVERMAVQALQR 268 Query: 580 G------NSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE--ERQRIVQVL 631 N L L + S+ T+ D + A+L T E ER+ I L Sbjct: 269 EKREVAFNDLPETLKKQSSK---TVLPDVLVGGDSARLPQGRTLSQHLENIEREIISTTL 325 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 R G ++ AA LGM RTTLLSRMQ L + Sbjct: 326 RAVGGNLS---RAARELGMPRTTLLSRMQSLKL 355 >UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIH6_DESAA Length = 558 Score = 284 bits (727), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 156/354 (44%), Positives = 219/354 (61%), Gaps = 22/354 (6%) Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 VG + +R +TD E H S + L G I+ QS M L Q + VA S+++ Sbjct: 226 VGAVETFRCLTD-------EYHLPSLADKTGLFQG-IVGQSNVMRRLFQMLPDVAASEAS 277 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VL+ GE+GTGKE+ ARAIH LSP P V +NC+AI SL+E+E FGH+KG+FTGA + Sbjct: 278 VLLTGESGTGKEIFARAIHSLSPSSKGPFVAVNCSAIAESLIEAEFFGHEKGSFTGADQS 337 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+A GGT+FLDE+ +L E Q KLLRVL+++ ER+GG++TIP+ RVI+ATN D Sbjct: 338 RAGRFEVAKGGTIFLDEVAELRPEHQVKLLRVLEQKMFERVGGTKTIPMEARVISATNLD 397 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 + M+E+R FR DL+YRL P+ LPPLR+R EDIPLL +HF + + + + A+ + Sbjct: 398 ITAMLEERTFREDLYYRLRTVPMHLPPLRERVEDIPLLVQHFIRMFNKKHRKEVRALDPK 457 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 L M + WPGNVRELE V+E A + +G + + + LPT+ E +A R S Sbjct: 458 VLNFFMEYHWPGNVRELERVMEYAYVFVKGPVIMM-------KHLPTIEEFAAKRKSGI- 509 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 P + + ER+ I++ L + G + AA LGM RT+L RM+ LG+ Sbjct: 510 ---PQDIDEEASERRAILRALEKAGG---KRQEAANLLGMSRTSLWRRMKSLGM 557 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 284 bits (727), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 159/336 (47%), Positives = 207/336 (61%), Gaps = 26/336 (7%) Query: 250 WQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAI 309 W P+L++ A ESA+ + + +G + FS N +LL I + Sbjct: 74 WPYIPVLIMTAFGSIESAVEL-MKYGAF--------DYITKPFS--NDELLLSIHN---- 118 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 AV A A R LQE ++ G+ I+ +S+A+ D+L V+ A S S Sbjct: 119 AVELARAHRQYRLLQEVME-----------DRYGVHKIVGRSRAIRDVLIMVERAAPSRS 167 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKE+IARAIH SPR+D P V +NC A+ +LESELFGH+KG+FTGA+ Sbjct: 168 TVLITGESGTGKELIARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVA 227 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 RGRFE ADGGTLFLDEI +L +LQ KLLRVLQER ER+GG I V++RV+AATN+ Sbjct: 228 MRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNK 287 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL MVE FR DL+YRLNV + LPPLR+R EDIPLL HF K+ T Sbjct: 288 DLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFST 347 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 EAL L ++WPGN+R+LENV+E ++L G +N+ Sbjct: 348 EALNYLTGYEWPGNIRQLENVVESCLVLVPGTVINV 383 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 284 bits (727), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 147/319 (46%), Positives = 204/319 (63%), Gaps = 11/319 (3%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 + I +S + D+L A S + VLI GE+GTGKEVIA IH S RR P +++NC Sbjct: 252 NYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVNCG 311 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 AIP +LLESELFGH+KGAFTGA+ G+FE+A+ GT+FLDEIG+L LQ KLLRVLQ+ Sbjct: 312 AIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVLQQ 371 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 +E +R+GG TI V+VR+IAATNRDL MV + FR DL+YRLNV P+ LPPLRDRP+DI Sbjct: 372 KEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPDDI 431 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 PLL +HF +K+++ + + I +A++ M + WPGNVRELENVIER + L + Sbjct: 432 PLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITL-------M 484 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 ++ + +LP+ + + L T +E E+Q I LR+ GAA Sbjct: 485 DTDLITAAMLPSYIKGDIAGREVQSLADDTVLPWEEYEKQIIANALRQGTSF----NGAA 540 Query: 646 TRLGMKRTTLLSRMQRLGI 664 L + T+ ++ ++ G+ Sbjct: 541 KLLRISHKTVAAKARKYGL 559 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 284 bits (726), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 145/322 (45%), Positives = 212/322 (65%), Gaps = 12/322 (3%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +II +++M + + +D +A +++TVLI GE+G GKE++A AIH S R P +K NCA Sbjct: 242 NIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFNCA 301 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 A+P S++ESELFGH++GAFTGA T +GRFE+A+ GT+FLDE+G+L L +Q KLLR+LQE Sbjct: 302 ALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRILQE 361 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 +E ER+GG++TI +VR+IAATNR+L + +++ +FR DLFYRLN+FP+ +PPLR+R DI Sbjct: 362 KEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKSDI 421 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 LLA +F +K + + + I T A+ LM + WPGNVRELEN +ERAV+L+ ++ Sbjct: 422 LLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILSDDGVIHG 481 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 + L PTL SS P D E + IV+ L+ T G ++ AA Sbjct: 482 Y------HLPPTL---QTAESSGTPCAGPLQQRLDALEYELIVEALKNTKGNMS---KAA 529 Query: 646 TRLGMKRTTLLSRMQRLGISVR 667 LG+ + R+++ I R Sbjct: 530 MELGLTDRVMGLRVKKFDIDFR 551 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/237 (58%), Positives = 182/237 (76%), Gaps = 1/237 (0%) Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 G +I QS+ M+ ++ V VA S STVL+ GE+GTGKEVIAR IH LSPR++ P +K+NC Sbjct: 194 GGVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNC 253 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 +A+P ++LESELFGH+KGAFTGA+ +GRFE+A GGTLFLDEIGD+ +Q KLLRVLQ Sbjct: 254 SALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQVKLLRVLQ 313 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 ERE ER+GG++TI V+VRVI ATN++L + V +FR+DL++R+NV + LPPLR+R ED Sbjct: 314 EREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLPPLRERKED 373 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 IPLLA H K+ + +NR + P EAL+ L++ WPGNVRELEN +ERA +R N Sbjct: 374 IPLLADHILNKIGKELNRKLRITP-EALKLLINCHWPGNVRELENCLERAATNSRNN 429 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 159/383 (41%), Positives = 234/383 (61%), Gaps = 56/383 (14%) Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGD--------IIYQSQAMEDLLQQVDIVAKSDST 370 S + E+L Q +++++ + ++ IG ++ S ++ + + ++ VA ++++ Sbjct: 103 SYVQIMEALHQ--CKIAQETVKSITIGSHRNPIFRSLVGNSTSIRTVRRLIEQVADTEAS 160 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VL+ GE+GTGKEV+AR IH S R +KP + INC AIP LLESELFGH+KGAFTGAI T Sbjct: 161 VLVLGESGTGKEVVARNIHAFSSRANKPFIPINCGAIPGELLESELFGHEKGAFTGAITT 220 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +GRFE+A+ GTLFLDEIGD+PL +Q KLLRVLQER ER+G +++I VNVR+IAAT+R+ Sbjct: 221 RQGRFELANSGTLFLDEIGDMPLPMQVKLLRVLQERCFERVGSNKSIDVNVRIIAATHRN 280 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR--HMNRAIDAIP 548 L + +++ +FR DLFYRLNVFP+E+PPLR+R EDIPL+ F + +AR NR I + Sbjct: 281 LEEAIKEGKFREDLFYRLNVFPIEMPPLRERAEDIPLI---FNELIARIESENRPIVHLM 337 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 +A+ L + WPGN+REL N++ER +L LN LP +RS Sbjct: 338 PDAMAALSEYSWPGNIRELANLVERLTILYPKGILN-------KEDLP-----QKIRSEY 385 Query: 609 AQLLHPTTPENDEEERQRIV--------------------------QVLRETNGIVAGPR 642 TPE++ E R++ Q L E++ +V+ Sbjct: 386 KTYFDSDTPESEREALLRVISQGTVSSSEGIDLKEHLVKTELALISQALNESDWVVS--- 442 Query: 643 GAATRLGMKRTTLLSRMQRLGIS 665 AA L M+RTTL+ +M++ G++ Sbjct: 443 HAANYLNMRRTTLVEKMRKYGLT 465 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 157/343 (45%), Positives = 222/343 (64%), Gaps = 13/343 (3%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 ++ EN QL QL G+ II S AM+ + +++ VA S +TVL+ GE+GTGKE++A Sbjct: 126 KVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVA 185 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 AIHQLSPR++ P V ++CAA+ LLESELFGH+KGAFTGAI GRFE A GTLFL Sbjct: 186 HAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTLFL 245 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIG++ L Q KLLR L E+ I+R+G ++ + V+VRVIAATN++L +MVE+ +FR DLF Sbjct: 246 DEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLF 305 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +RLNV + +PPLR+R EDIPLLA+ F + A + ID + EA++ L+ +DWPGNVR Sbjct: 306 FRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPGNVR 365 Query: 566 ELENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 EL+ IE V+L +G + +L +R R P L+ ++ SS P E Sbjct: 366 ELKMAIEHGVVLCQGEEIRPRDLPERIRIPR--PLLSAPISVESS-----EPDCFNLKEA 418 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 E++ I+ LR G AA +LG+ R TL ++++ ++ Sbjct: 419 EKRLILHALRVCQG---KKTSAAKKLGISRKTLQRKIKQFELT 458 >UniRef50_A9DEH7 PAS domain:sigma-54-dependent transcriptional regulator, Fis family protein n=3 Tax=Alphaproteobacteria RepID=A9DEH7_9RHIZ Length = 623 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/354 (41%), Positives = 222/354 (62%), Gaps = 11/354 (3%) Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 A + L+E L+QEN L E++ D++ S A++ L Q+++VA ++S VLI G Sbjct: 277 AMEQIEALRERLEQENEYLQEEIQQVRSHYDLVGGSPAIQRTLAQINLVAATESNVLITG 336 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 E GTGK ++A A H+ S R +P++++NCA I + ESELFGH +GAF GA++ G+ Sbjct: 337 EGGTGKALVASATHKASSRAKRPIIRVNCAGISPASFESELFGHVRGAFAGALHDRTGKI 396 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 EIA+GGTLFLDE+ ++PL+LQ +L+VL+++ ERLG SRT +NVRVIAA+ +DL V Sbjct: 397 EIANGGTLFLDEVSEIPLDLQGTILKVLRDKTFERLGESRTNKINVRVIAASTKDLELCV 456 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 + FR DL++ LNVFP+E PLR+R DIP L ++F + +N + +R+L Sbjct: 457 KQGSFREDLYFFLNVFPIECRPLRERVADIPELTQYFLKLACERLNLPKPTVTKANIREL 516 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 ++ WPGNVREL+NVIER +L+RG+ L L + + L L+ + M L Sbjct: 517 QAYHWPGNVRELQNVIERGAILSRGDKLVLEFHKLGRKRLSELDTEVMTEEQMRDL---- 572 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + + I+ L+ TNG V+G GAA LG++ TTL SR+++ GI+ ++ Sbjct: 573 -------QIKNIIACLKMTNGKVSGDDGAANLLGIRPTTLYSRIKKFGIADEQI 619 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 140/240 (58%), Positives = 174/240 (72%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II S M+++ + + +VA SD+TVLI GETGTGKE++A IH S PLVK+NCAA Sbjct: 146 IIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELVAETIHYNSTFSQGPLVKVNCAA 205 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +P +LLESELFGH+KG+FTGA +GRFE+A GT+FLDEIG++ L Q KLLRVLQER Sbjct: 206 LPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTIFLDEIGEMTLGTQRKLLRVLQER 265 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E ER+GGS TI V+ RVIAATN+ L + V +FR DLFYRLNV + LPPLR+R EDIP Sbjct: 266 EFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDLFYRLNVIHIHLPPLRERKEDIP 325 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LL +F QK H + +I EA++ LM DWPGNVRELEN IERAV+L +G + H Sbjct: 326 LLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWPGNVRELENTIERAVILAQGGVITTH 385 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 235/365 (64%), Gaps = 17/365 (4%) Query: 305 DRIAIAVGN-----ADAWRSMTDLQESLQQENHQLSEQ-LLSNLGIGDIIYQSQAMEDLL 358 +R+ I VGN ++ + ++Q Q+ +L+++ L+++ DII+ S M+D++ Sbjct: 275 NRVPIVVGNEVVGAVATFQDVAEIQNMEQKIRRRLADKGLIASFKFDDIIFISDKMKDVV 334 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 Q A DSTVLI GETGTGKE+ A++IH S R++ P V INCAA+P +LLESELFG Sbjct: 335 NQAKKYALLDSTVLILGETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFG 394 Query: 419 HDKGAFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTI 477 + +GAFTGA + G FE+A GT+FLDEIG++P+ LQ KLLRV+QE+++ R+G R I Sbjct: 395 YAEGAFTGARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLI 454 Query: 478 PVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMA 537 PV+VR+I ATNR+L +M+ + +F+ DLFYR+++ + +P LR+R EDI +L +F +K + Sbjct: 455 PVDVRIICATNRNLIEMINEGKFKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYS 514 Query: 538 RHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPT 597 + I I + + L WD+PGNVRELE++IERA + GN ++VR +L Sbjct: 515 LICKKHIQGITSRGMELLKKWDYPGNVRELESIIERACAICEGNI----IDVRDIKLYN- 569 Query: 598 LNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS 657 ++DS +Q P DE E++ I +V++ T+G ++ AA +LG+ RTTL Sbjct: 570 -DQDSMENKVSSQSFLEIKPL-DEIEKEYIKKVIKFTDGNLS---EAAKKLGISRTTLWR 624 Query: 658 RMQRL 662 +++ Sbjct: 625 KLKNF 629 >UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2 Tax=Fusobacterium RepID=C3WG76_FUSMR Length = 588 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 151/364 (41%), Positives = 237/364 (65%), Gaps = 14/364 (3%) Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLLQQVDIVAKS 367 I++ + D ++ + E +++ N ++E +N + + DI S+A + L + + +A + Sbjct: 230 ISLTSFDNRKNSAFIFEDIKKINENIAEITNNNVISLNDIYGNSEATKKLKENILKIADT 289 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 STVLI GE+GTGKE++AR++H S R++KP V INC+AIP SLLESELFG+ KGAFTGA Sbjct: 290 SSTVLITGESGTGKELVARSLHSHSNRKNKPFVVINCSAIPDSLLESELFGYVKGAFTGA 349 Query: 428 INTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAA 486 N R G+FE+A+ G +FLDEIGD+PL LQ K+LRV+QE++IER+G +++I +++++IAA Sbjct: 350 NNNGRIGKFELANTGVIFLDEIGDMPLYLQAKILRVIQEKKIERIGSNKSIDLDIKIIAA 409 Query: 487 TNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDA 546 TN +L + +++++FRSDL+YRLNV P +L PLR+R EDI + + +K R + I + Sbjct: 410 TNVNLEEKIKEQKFRSDLYYRLNVIPFKLLPLRERKEDILPIIEKLIKKYNRISGKNIIS 469 Query: 547 IPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP-TLNEDSALR 605 I E + +S+DWPGNVRELENVIE ++ GNS ++ S LLP +++ S Sbjct: 470 IDDEVKQAFLSYDWPGNVRELENVIELMFNIS-GNS-----SILNSSLLPENISKKSVSN 523 Query: 606 SSMAQLLHPTTPENDEE-----ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 + + P +D E E+ I+Q L + G + + ++G+ TTL +++ Sbjct: 524 PPKSSQIIIKNPSDDFENFDIIEKNYILQGLEKFGNTTEGKKIISEKIGIGLTTLYRKLK 583 Query: 661 RLGI 664 R GI Sbjct: 584 RFGI 587 >UniRef50_Q07WT9 Transcriptional regulator, Fis family protein n=4 Tax=Gammaproteobacteria RepID=Q07WT9_SHEFN Length = 526 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 158/354 (44%), Positives = 233/354 (65%), Gaps = 21/354 (5%) Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 + NHQ+++ +L+ G II S A+ DLL +++ VA SD +VLI GETG GKE++A++I Sbjct: 170 ERNHQVAQCMLATAGPSSIIGNSVAITDLLSEINTVAVSDLSVLITGETGVGKELVAKSI 229 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 HQ S R ++PLV+INCAA+P S++ESELFGH KGA++GA++ RGRFE+ADGGTLFLDE+ Sbjct: 230 HQQSRRSEQPLVQINCAALPESIVESELFGHVKGAYSGAVSDRRGRFELADGGTLFLDEV 289 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+LPL +Q KLLR LQ EI+R+G I V+VR++AATNR+L V++ +FR+DL++RL Sbjct: 290 GELPLAVQAKLLRALQNGEIQRVGSDNIIVVDVRIVAATNRNLQLEVKEGRFRADLYHRL 349 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 +V+PL +PPLR+R +D+ LLA +F +K + A + A+ QL + WPGNVRELE Sbjct: 350 SVYPLPVPPLRERGKDVILLAGYFLEKSQHQLGVAKLRLQQTAIEQLTQYHWPGNVRELE 409 Query: 569 NVIERAVLLT-----RGNSL----NLHLN---VRQSRLLPTLNE-----DSALRSSMAQL 611 +++ RA L R S+ +HL V + P + E D+ ++++Q+ Sbjct: 410 HLLSRAALRAISEQGRHASIISISRVHLGSEFVVSHTVAPAIAEVDIINDNNAAAALSQV 469 Query: 612 LHPTTPEN-DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 L ++ DE +RQ I VL G +A A L + R+ L+ M+RLG+ Sbjct: 470 LTLGLRDSTDEYQRQIIQTVLATERGNLA---AVARSLQLDRSNLIRTMRRLGL 520 >UniRef50_B8K7S4 Polar flagellar protein FlaK n=2 Tax=Gammaproteobacteria RepID=B8K7S4_VIBPA Length = 488 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/429 (40%), Positives = 240/429 (55%), Gaps = 47/429 (10%) Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 L NH P LL+A S E L H + + ++ ++ L ++ Sbjct: 69 LARANHVP--LLIAGKHSYPVDE-----LTHYVGELDFPLNYPQLSEALRHCKDFLGRKG 121 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 + N ++ QS ++++ ++ V+ +++ VLI GE+GTGKEV+AR IH Sbjct: 122 MNVVSSARKNTLFRSLVGQSHGIKEVRHLIEQVSSTEANVLILGESGTGKEVVARNIHYH 181 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S RR P V INC AIP LLESELFGH+KGAFTGAI + +GRFE+A+GGTLFLDEIGD+ Sbjct: 182 STRRSGPFVPINCGAIPPDLLESELFGHEKGAFTGAITSRKGRFELAEGGTLFLDEIGDM 241 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 P+ +Q KLLRVLQER ER+GG+ TI V+VRVIAAT+R+L M+ED FR DL+YRLNVF Sbjct: 242 PMPMQVKLLRVLQERCFERVGGNTTIKVDVRVIAATHRNLESMIEDESFREDLYYRLNVF 301 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+E+P LRDR +DIPLL + +M + I P ++ LM DWPGNVREL N++ Sbjct: 302 PIEMPALRDRKDDIPLLLQELMTRMEAEGAQPICFTP-RSINSLMEHDWPGNVRELANLV 360 Query: 572 ERAVLLTRGNSLNL-HLNVR---------------------QSR--LLPTLNEDSALRSS 607 ER ++L + +++ HL + Q R +ED +L S+ Sbjct: 361 ERMIILYPNSLVDVNHLPTKYRYSDIPEFQPGYNTGRTVEEQERDAFYDIFSEDFSLESN 420 Query: 608 MAQLLHPTTPEN------------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 P+N + E I Q L G+VA AA LGM+RTTL Sbjct: 421 DLFQDSEAAPQNLPPEGVNLKEMLADLEVNMINQALEAQGGVVA---RAADMLGMRRTTL 477 Query: 656 LSRMQRLGI 664 + +M++ + Sbjct: 478 VEKMRKYNL 486 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 154/350 (44%), Positives = 226/350 (64%), Gaps = 20/350 (5%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAK---SDSTVLICGETGTGKE 382 +L +EN L ++L + II +S+ M LQ +DIV K +++TVLI GE+GTGKE Sbjct: 121 NLIKENLMLRKELYEKFKMDGIIGKSRKM---LQVLDIVKKATPTNATVLIYGESGTGKE 177 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 +IARAIH SPR+DKP + INCAAIP +L+ESELFG++ GAFTGA G E AD GT Sbjct: 178 LIARAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGT 237 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDEI ++PL Q KLLRVLQ++E+ ++G T V+VR+IAATN++L + VE +FR Sbjct: 238 LFLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFRE 297 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRL V +E+PPLR+R EDIP L F +K ++ + ++ I +AL L+++ WPG Sbjct: 298 DLYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPG 357 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 N+RELE+VIERA+++ + + + + R++ N + + P N EE Sbjct: 358 NIRELESVIERAIIICEKDKITFNDIQDELRVITPKN--------LFDIDIPDEGINYEE 409 Query: 623 -ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS--VREV 669 E++ I + L ++N ++A AA LGM T R+++ G+S +RE+ Sbjct: 410 LEKELIKKALIKSNFVIA---KAARLLGMSYDTFWYRLKKFGLSDNIREM 456 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 140/282 (49%), Positives = 198/282 (70%), Gaps = 8/282 (2%) Query: 304 ADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLG-IGDIIYQSQAMEDLLQQVD 362 AD++ + +G RS L+QE L +Q+ S + DII +S ++ + + Sbjct: 108 ADQVLVTLGKVLEKRS-------LRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIR 160 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 A + +TVLI GE+GTGKE+IA+A+HQ SPR+DKP ++++CAA+ +LLESELFGH+KG Sbjct: 161 RAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKG 220 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 +FTGA+ GRFE+ADGGTLFLDEIG++ +Q KLLRVLQ+RE ER+GG++T+ V+VR Sbjct: 221 SFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVR 280 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 ++AAT+RDL V+ +FR DL+YRLNV + LPPLRDR D+P L HF +K + + Sbjct: 281 IVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGK 340 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 + + L+ L+S DWPGN+RELEN IERAV+L +G L+ Sbjct: 341 QVRGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQELS 382 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 159/335 (47%), Positives = 219/335 (65%), Gaps = 23/335 (6%) Query: 339 LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKP 398 L ++ G II + + ++ QV+ VA++D+TVLI GE+GTGKE+IA AIH S R +P Sbjct: 134 LGDMNTG-IIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAIHDRSKRVSQP 192 Query: 399 LVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPK 458 V INC AIP +L+ESELFGH+KGAFT A T G FE A+GGTLFLDEIG+LPL+ Q K Sbjct: 193 FVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDEIGELPLDAQVK 252 Query: 459 LLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPL 518 LLRVL+ER+I R+GG + IPVNVR++AATNR+L + V +FR DL YRLNVF ++LPPL Sbjct: 253 LLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYRLNVFTIQLPPL 312 Query: 519 RDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 R+R EDIPLLA F +K +N +I++I EA+ QL ++DWPGNVR+LEN ++ A++L Sbjct: 313 RERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDLENAVQSAMILC 372 Query: 579 RGNSLNL-HLNVR-QSRLLPTLN------EDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 ++ HL R +S + L ED++LR + N E+ RI+ Sbjct: 373 VDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDT-----------NSLAEKARILSA 421 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 L++ N A L + R TL ++M+R + Sbjct: 422 LQKHN---YNRTLTAEALNISRKTLFNKMKRYNLG 453 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 159/354 (44%), Positives = 217/354 (61%), Gaps = 15/354 (4%) Query: 231 QTLQTRQPTLTHRA--DDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS 288 + L+ +P L + A D+ + +L + S C +PL GA+ L S Sbjct: 85 EVLRRGEPVLVYEAQQDERYGKAESIVLQRIQSIAC-----VPLRIKERLIGAIYLDSLS 139 Query: 289 ST-LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDI 347 F+ +N L+ A + AIA+ NA L ++L++EN +L ++ G +I Sbjct: 140 QRGRFTRDNLPFLEAFAHQAAIAIENAQ-------LYQALREENRRLRSEIQRLHGFDEI 192 Query: 348 IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI 407 + QS AM ++ + V +D+TVLI GE+GTGKE+IARAIH S R+DKP V + C ++ Sbjct: 193 VGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARAIHYNSERKDKPFVVVFCGSL 252 Query: 408 PASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQERE 467 P LLESELFG+ KGAFTGA++ +G FE+ADGGT+FLDE+GDL +Q LLRVLQE E Sbjct: 253 PDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDEVGDLSPRMQTALLRVLQEGE 312 Query: 468 IERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPL 527 I R+G ++ V+VRVI+ATN+ L ++V+ +FR DL+YRLN + +PPLR R DIPL Sbjct: 313 IRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYRLNTIQITVPPLRHRRGDIPL 372 Query: 528 LAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 LA HF K A I EAL L + WPGNVRELEN IERAV+L RG Sbjct: 373 LAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVRELENTIERAVVLARGE 426 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 133/241 (55%), Positives = 178/241 (73%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 ++ S AM+++ + + VA +D TVLI GE+GTGKE+++RAIH SPR P V +NCAA Sbjct: 153 MVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRAIHYNSPRNKGPFVVVNCAA 212 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP LLESELFG++KGAFTGA G+FE+A+ GT+ LDEIGD+ LQ K+LRVLQE Sbjct: 213 IPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDEIGDMSPMLQAKILRVLQEH 272 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 IER+GG+R+IPV+VRV+AATN+DL +V+ FR DL++RLNV ++LPPLR+R EDIP Sbjct: 273 VIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFRLNVVQIQLPPLRERKEDIP 332 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LLA HF +K A ++ + + E + LM++D+PGNVRELEN+I RAV L G L L Sbjct: 333 LLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRELENIIARAVALCSGKVLTLD 392 Query: 587 L 587 + Sbjct: 393 V 393 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 199/536 (37%), Positives = 289/536 (53%), Gaps = 49/536 (9%) Query: 155 RVLVDITNAV-----LSHLDLDDLIADVAREIHHFFGLAS-VSMVLGDHRKNEKFSLWCS 208 R+L D++ + +SH L+ ++ +A+ +H G+ + VS G+ R L + Sbjct: 9 RLLFDLSQVIDHSRDISH-SLEATLSLMAQHLHMMRGMITLVSPHTGEIRIEVAHGLNPA 67 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHR--ADDLFL-------WQRDPLLLLL 259 + H A GE V + +Q+ QP + A +FL Q+D + + Sbjct: 68 EQRRGHYAL------GEGVT-GRVIQSGQPMVVSNVSASPIFLNRTRSRDLQKDTIAFI- 119 Query: 260 ASNGCESALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWR 318 C +P+ F + GAL + + + EE+ ++L IA IA A A A + Sbjct: 120 ----C-----VPIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHA---ARARQ 167 Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 ++ D + + +EN +L L + L + S AM + +Q+ VA S +TVL+ GE+G Sbjct: 168 NVMDERVAAIEENMRLRNALSAPLRPHGFVGNSDAMRLVYEQISQVAPSSTTVLLYGESG 227 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 TGKE+ A AIH R P + +NCAA+P +L+ESELFGH+KGAFTGA +GRFE+A Sbjct: 228 TGKELAAHAIHSAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELA 287 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 DGGTLFLDE+G+L L Q KLLRVLQER ERLGG+ ++ V+VR+I ATNRDL +MVE+ Sbjct: 288 DGGTLFLDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEG 347 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 FR DL+YRLNVFP+ +PPLR+R DI LA +F K A R+ I + L + Sbjct: 348 TFRRDLYYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDMLQRY 407 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNL------HLNVRQSRLLPTLNEDSALRSSMAQLL 612 WPGN+RELENV+ERAVLL + L L L+ P ++ + + L Sbjct: 408 TWPGNIRELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTL 467 Query: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 DE ER I L G + AA LG+ + RM++ GI+ ++ Sbjct: 468 QDRL---DELERACITDALARHKGHMG---HAAQALGLTERVMALRMKKHGINYKD 517 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 151/313 (48%), Positives = 205/313 (65%), Gaps = 5/313 (1%) Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 + +II +S M L + ++ VA SDSTVLI GE+GTGKE++ARAIH LS R K V +N Sbjct: 141 LNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKELVARAIHDLSNRATKNFVPVN 200 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAAIP LLESELFGH KG+FTGA+ T GRFE+AD GTLFLDEIGD+ LQ KLLRVL Sbjct: 201 CAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVL 260 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 Q +E+E +G +RT V+VR+IAATN++L +V + FR DL+YRL+V P+ LPPLR+R Sbjct: 261 QNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKT 320 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 DIPLL +F +K R+ R + + + L ++DWPGNVRELEN++ER V+L ++ Sbjct: 321 DIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGNVRELENLVERLVILKGSGTI 380 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 + R + + + R ++ ++ E Q I+Q L +T G + Sbjct: 381 TFQDLPEKYRGIKSAPKSE--RLTLPDTGFCLNSAVEDFENQLILQALEKTGG---NKKE 435 Query: 644 AATRLGMKRTTLL 656 AAT L +KRTTL+ Sbjct: 436 AATLLNLKRTTLI 448 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 150/329 (45%), Positives = 209/329 (63%), Gaps = 12/329 (3%) Query: 339 LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKP 398 L LG D+I QS M +++ V+ VA S ++V I GE+GTGKEV++RA+H LS RRDKP Sbjct: 135 LKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKP 194 Query: 399 LVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPK 458 + INCA+IPA+L+ESELFGH++GAFTGA G FE+A GGTLFLDE+G++P+ELQ K Sbjct: 195 FIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAK 254 Query: 459 LLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPL 518 LLRVL+E ++ RLGG I V+VRV+ ATNRDL Q +++ +FR DL++RLNVF + LPPL Sbjct: 255 LLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPL 314 Query: 519 RDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 R+R +D+P+L +HF K + + + EA+ L ++DWPGN+REL N +ERAV+L Sbjct: 315 RERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAVILC 374 Query: 579 RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 G + + L P + S R + P D ER+ I+ L+ Sbjct: 375 DGELIT------REHLPPDMAGKSPERHTFRL---PFGLSLDAVEREYILGSLQRNGNNK 425 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGISVR 667 A A LG+ TL +++ R R Sbjct: 426 A---RTAEVLGVSEKTLYNKLNRYAAEAR 451 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 139/260 (53%), Positives = 186/260 (71%), Gaps = 2/260 (0%) Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 QEN L +L G+II +S AM ++ + VA +++TVLI GE+GTGKE++A++I Sbjct: 124 QENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSI 183 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H S R+D P V +NCAA+ S+LESELFGH+KGAFTGA +GRFE+ADGGTLFLDEI Sbjct: 184 HFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEI 243 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G++ LQ KLLRVLQE+ ER+GG + I V++R+IAATNRDL + VE+ FR DLFYRL Sbjct: 244 GEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRL 303 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMAR--HMNRAIDAIPTEALRQLMSWDWPGNVRE 566 NV P++LPPLR+R +DIPLL HF QK A + + + R + WPGNVRE Sbjct: 304 NVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRE 363 Query: 567 LENVIERAVLLTRGNSLNLH 586 LENVIERA++L ++++++ Sbjct: 364 LENVIERAIILCNSDAISVN 383 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 155/360 (43%), Positives = 221/360 (61%), Gaps = 26/360 (7%) Query: 315 DAWRSMTDLQES---LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 D M +L++S ++ +L + S DII S + + + A+S+STV Sbjct: 222 DIMNLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTV 281 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 LI GE+GTGKE++A AIH S RR+ P +K+NCAAIP +LLESE FG+ KGAFTGA+ + Sbjct: 282 LILGESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKSK 341 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 G+FE+A GGT+FLDEIGD+ L LQ KLLRVLQE E ER+GG++TI V+VRVIAATNR+L Sbjct: 342 IGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNL 401 Query: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 +++ +FR DL+YRLNV + +PPLR R ED+P L H + R + + + I +A Sbjct: 402 RELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDA 461 Query: 552 LRQLMSWDWPGNVRELENVIERAV------LLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 L S+DWPGNVRELENVIER + +LT+ N + H+N Q R+ + D Sbjct: 462 EEVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQ-HVN--QFRMSSERDVD---- 514 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 L P ++ E I + + + V G R AA L + TL ++++++ ++ Sbjct: 515 ------LMPI----EQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKKIKVA 564 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 163/410 (39%), Positives = 243/410 (59%), Gaps = 10/410 (2%) Query: 259 LASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRIAIAVGNADAW 317 +A G AL + + P ++ A++S T S ++ + + V Sbjct: 56 MAGMGGMEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVE 115 Query: 318 RSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 R++ L+ L +EN L ++L + +II +S AM +L + +VA +++TVL+ GE+ Sbjct: 116 RALDHLR--LARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGES 173 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE++A+A+H SPR P+V +NCAA+ +LLESELFGH+KGAFTGA GRF Sbjct: 174 GTGKELVAKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMA 233 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 AD G++FLDEIG++ +Q KLLRV+QEREI+R+GG R + V+VR++AATNRDL + VE Sbjct: 234 ADKGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEA 293 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FR DL+YRLNV + +PPLR+R +DIPLLA+HF + A + I A+ L+ Sbjct: 294 GRFREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLR 353 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLN---LHLN-VRQSRLLPTLNEDSALRSSMAQLLH 613 WPGNVRELEN +ERAV+L+ G + L L+ +R++ + + Sbjct: 354 CPWPGNVRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAG 413 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 D+ ER+ I+ LR+T G AA LG+ R TL ++++ G Sbjct: 414 LAGMALDDVEREVILATLRDTGG---NKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 136/253 (53%), Positives = 180/253 (71%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 E +++ +L +L G +I+ + AM ++ V+ VA +D+TVL+ GETGTGKE++ Sbjct: 738 ERARRDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELV 797 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH+ SPRRD+P V +NC AIP L+ESE FGH+KGAFTGA+ GRFE ADG TLF Sbjct: 798 ARAIHRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLF 857 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDE+GDL L +Q KLLRVLQE+EI R+G + V+VR++AATNRDL +V + +FR DL Sbjct: 858 LDEVGDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDL 917 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 FYRLNV PL LPPLR+RP+D+P L +HF + A+ R P + L ++ WPGNV Sbjct: 918 FYRLNVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNV 977 Query: 565 RELENVIERAVLL 577 REL N+ ERAVL+ Sbjct: 978 RELRNLCERAVLM 990 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 280 bits (717), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 156/342 (45%), Positives = 217/342 (63%), Gaps = 19/342 (5%) Query: 325 ESLQQENHQLSEQLLSNLGI--GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 ES+++E +S + + G+ ++I+ AM+ + + + VA S +TVLI GE+GTGKE Sbjct: 120 ESVERERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKE 179 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 ++AR IH LS R+ + +NCAAIP +LLESELFGH+KGAFTGA+ RG+FE+A+GGT Sbjct: 180 LVARMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGT 239 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEIG++P LQ KLLRVLQER ER+GGS I NVRVIAATNRDL + V +++FR Sbjct: 240 IFLDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRD 299 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DLFYRLNVFP+ +PPLR R + + LA++F + A + + I EALR + ++ WPG Sbjct: 300 DLFYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPG 359 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 N+REL+NVIER V+L R T E A+ + P + Sbjct: 360 NIRELQNVIERGVILAREEL--------------TAPELPAMIAGKETEGGPKVGILKDI 405 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ER I++ L+ G R AA LG+ + TL R++ LG+ Sbjct: 406 ERNCILEALKNNRG---NRRMAAETLGISKRTLQYRLKELGL 444 >UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCN8_DESAA Length = 529 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 169/419 (40%), Positives = 245/419 (58%), Gaps = 40/419 (9%) Query: 261 SNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSM 320 +SAL++ L G L L ++ + QL + + + A+A+ N+ R + Sbjct: 110 GGAVQSALILDLVIEGRLIGVLTLHGEVGKTYTARHEQLFRLLNEPFAVALSNSMRQREL 169 Query: 321 TDLQESLQQEN--HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 L+E L +N Q +E+ S +++ + +++ VA +S VL+ GETG Sbjct: 170 NKLKELLTDDNPYFQENEEAFSE---NEVVGADYGLRGVMEMARQVAPLESPVLLLGETG 226 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 GKE+IA A+H+ SPRR+ PL+K+NC AIP +L++SELFGH+KGAFTGA + RGRFE A Sbjct: 227 VGKELIASAVHRASPRRNGPLIKVNCGAIPDTLIDSELFGHEKGAFTGASSMKRGRFERA 286 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 D GT+FLDE+ +L E Q +LLRVLQE+EIER+G + T V++RVIAAT+R+L +V Sbjct: 287 DEGTIFLDEVAELSPEAQVRLLRVLQEKEIERVGAAETTHVDIRVIAATHRNLDGLVSMG 346 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA-IDAIPTEALRQLMS 557 +FR DL +RL VFP+ +PPLRDR DIP L +HF + + M I + A+ +LM Sbjct: 347 RFRQDLLFRLKVFPIVIPPLRDRKGDIPSLVQHFVRIKSLDMKLGTIPPLAPGAMDKLMD 406 Query: 558 WDWPGNVRELENVIERAVLLTRGNS-----LNLHL-------NVRQSRLLPTLNEDSALR 605 + WPGNVRELEN +ERA++L+ G +L L NV +S LPT+++ Sbjct: 407 YSWPGNVRELENAVERALILSGGKKPVFQEFDLGLKPGPKTKNV-ESLSLPTMDQ----- 460 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +MA L+ + L G V G GAA LGM TL +RM++LG+ Sbjct: 461 -AMADLMR---------------KALVLAKGRVEGKGGAAEILGMHPMTLRNRMKKLGV 503 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 154/347 (44%), Positives = 220/347 (63%), Gaps = 23/347 (6%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L+ EN L S +G +I+++ +AM ++ Q+D VA S++ V I GETGTGKE+ AR Sbjct: 125 LETENRDLR----SRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAAR 180 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 +H+ SPR+ P + +NCAA+PA L+ESELFGH+KG+FTGA H G+FE A GTLFLD Sbjct: 181 TLHEKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFLD 240 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIGD+PL +Q KLLRVL+E E+ER+GG ++IPV+VRVI AT+R+L +V++ +FR DLF+ Sbjct: 241 EIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLFH 300 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 R+ VFPL LPPLR R EDIP+L +HF ++ EA+ L + WPGNVRE Sbjct: 301 RVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVRE 360 Query: 567 LENVIERAVLLTRGNSLN---LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 + NV+ER +LL ++ + L + +++ + L S +AQ E Sbjct: 361 MRNVVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGPLSSRVAQY-----------E 409 Query: 624 RQRIVQVL-RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 R+ I+ L R+ + I A LG++R+ L + Q LGI +R V Sbjct: 410 REVILAELQRQKHHIT----NTAKALGLERSHLYKKCQALGIDLRAV 452 >UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator, putative n=9 Tax=Shewanella RepID=A8FQ36_SHESH Length = 518 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 159/408 (38%), Positives = 243/408 (59%), Gaps = 19/408 (4%) Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 +S +L+ + GN G + + +F + +L+ ++ R++ Sbjct: 121 KSVILLRMVSGNTHLGVVGFYAKQAGVFRPRHVDMLEPHMQTFSLITAFNLKGRNLLRAN 180 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 E+L ++N L L N+ G ++ ++ ++QQV+ +AK ++TVL+ GETG GKEVI Sbjct: 181 EALAEQNQSLKRTL--NICNG-VVGAHSGLKHVMQQVESIAKLNTTVLMLGETGCGKEVI 237 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A AIH+LS R +KP +K+NC AIP SL++SE+FG+++GAFTGA + G FE A+GGT+F Sbjct: 238 ANAIHELSLRANKPFIKVNCGAIPESLIDSEMFGYERGAFTGAESRKAGYFEQANGGTIF 297 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG+LPL +Q +LLRVLQ I R+GG ++ +++RVIAAT+R+L MV +FR DL Sbjct: 298 LDEIGELPLSVQVRLLRVLQNSTITRVGGHDSVQLDIRVIAATHRNLKAMVSTGEFREDL 357 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM---SWDWP 561 +YRL +FP+E+P LR R DIPLL +HF + ++ N+ D +P A QL + WP Sbjct: 358 WYRLAIFPIEIPSLRQRRTDIPLLVQHFIEMLSAKFNQ--DQLPRVAPEQLAILSQYHWP 415 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN-- 619 GNVREL NV+ERA++ LN L+P + + + ++ P+ + Sbjct: 416 GNVRELINVLERAIIQHPKGPLNFDF------LVPEVKAEHKEKRGETIIVDPSHATDKL 469 Query: 620 ---DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + R+ I LR T G + GP GAA L + T+ S+M++LGI Sbjct: 470 VPLETMTRKYIEHALRVTGGKLYGPGGAAQLLDINPNTMRSKMKKLGI 517 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/320 (46%), Positives = 207/320 (64%), Gaps = 7/320 (2%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 +I S +ME L + +A S ++VLI GE+G+GKEV+A AIHQ SPR+ P V INCAA Sbjct: 268 LIGHSPSMEQLRSTIGKIANSYASVLITGESGSGKEVVAFAIHQSSPRKAAPFVTINCAA 327 Query: 407 IPASLLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 IP LLESELFG+ +GAF+GA R G+FE+A+GG+LFLDEIGD+PL LQ KLLRVLQE Sbjct: 328 IPEQLLESELFGYVRGAFSGADPKGRMGKFELANGGSLFLDEIGDMPLHLQAKLLRVLQE 387 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 + I R+G + TI ++VR+IAATN+++ MVE+ QFR DLFYRLNV PL LP LR+R DI Sbjct: 388 KAITRVGSNNTINIDVRIIAATNKNINAMVENNQFREDLFYRLNVVPLVLPSLRERRADI 447 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 +LA++F + + R +P + + +L +W WPGN+REL NVIE + + RG + + Sbjct: 448 AVLAQYFADEFSVSYQRPPQKLPDDVINRLYAWHWPGNIRELRNVIEY-IFVMRGEAAGI 506 Query: 586 HLNVRQSRLLPT-LNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 + S L P L +++M + + ER+ I V++ V G + A Sbjct: 507 N----ASHLPPYLLTAADGRKTTMTAQPRQLASKGKQAEREAIENVIQRFGSSVEGKKQA 562 Query: 645 ATRLGMKRTTLLSRMQRLGI 664 AT LG+ TL +++ G+ Sbjct: 563 ATELGISIATLYRKIKLYGL 582 >UniRef50_D2UDB2 Probable flagellar sigma-54 dependent transcriptional activator fleq protein n=1 Tax=Xanthomonas albilineans RepID=D2UDB2_XANAL Length = 495 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 161/352 (45%), Positives = 219/352 (62%), Gaps = 45/352 (12%) Query: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 S+A+ L + +D VA D+TVL+ GE+GTGKEV+ARAIHQ SPR D P V INC AIP Sbjct: 142 SEAVTLLRRLIDQVAAFDTTVLVLGESGTGKEVVARAIHQKSPRCDGPFVAINCGAIPPD 201 Query: 411 LLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIER 470 LLESELFGH+KG+FTGA++ +GRFE+A+GGTL LDEIGD+ L +Q KLLRVLQER ER Sbjct: 202 LLESELFGHEKGSFTGALSARKGRFEMAEGGTLLLDEIGDMSLPMQVKLLRVLQERSFER 261 Query: 471 LGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAK 530 +GG+ TI NVRVIAAT+R+L + + D QFR DLFYRLNVFP+E+P LR+R +D+P L Sbjct: 262 VGGNVTIRCNVRVIAATHRNLEERIADNQFREDLFYRLNVFPIEMPALRERSDDLPALVH 321 Query: 531 HFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH---- 586 ++AR R EAL+ L +++WPGNVREL N++ER +L G+ + + Sbjct: 322 TIAAQLAR-TGRGEVRFSEEALQALCNYEWPGNVRELTNLVERLAVLHPGSLVRVQDLPA 380 Query: 587 ------------------LNVRQSRLLPTLNEDSALRS--------SMAQLLHPTTPEND 620 + + R LP + + LR+ S A + T PE+ Sbjct: 381 RYRGDFASSIDVSAPPSPVTTTEPRRLPNVVD---LRTGGKLHGEYSQATQVAATLPESG 437 Query: 621 EEERQRIVQV--------LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + R + + L T G+VA AA LG++RTTL+ ++++ GI Sbjct: 438 LDLRGHMANIELALINEALERTQGVVA---HAAQLLGLRRTTLVEKLRKYGI 486 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/251 (53%), Positives = 179/251 (71%), Gaps = 3/251 (1%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L++EN QL ++L +II +S+ M+ + ++ V+ S VLI GE+GTGKE++AR Sbjct: 148 LRRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVAR 207 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH S R D+P V I C AIP +LLESELFGH+KGAFTGA+ +G FE+ADGGTLFLD Sbjct: 208 AIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLD 267 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EI +LP +Q KLLRV+QE E ++GG+R + V+VR++AATN+DL Q V + QFR DL+Y Sbjct: 268 EIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYY 327 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV + LPPLRDR EDIPLL HF QK+ + IP +R+ + + WPGN+RE Sbjct: 328 RLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS---TTIPDGVMRRFLDYHWPGNIRE 384 Query: 567 LENVIERAVLL 577 LEN +ER V+L Sbjct: 385 LENTVERCVVL 395 >UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 Tax=Proteobacteria RepID=A0L6X2_MAGSM Length = 550 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 160/360 (44%), Positives = 228/360 (63%), Gaps = 26/360 (7%) Query: 318 RSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 RS T + +++ EN + Q + ++ ++ +M+ ++ A+ DSTVL+ GE+ Sbjct: 205 RSTTAMSTAIRIENERSGMQPV-------LLGKAASMKQVVNMALKAAQFDSTVLVLGES 257 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE++A +H S R +P VK+NCA++ +LLESELFGH+KGAFTGAI T +GRFE+ Sbjct: 258 GTGKELVANTVHYNSARASRPFVKVNCASLSDNLLESELFGHEKGAFTGAIATRKGRFEM 317 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 ADGGTLFLDEIG++ Q KLLRVLQE E ER+GG+RTI VNVRV+AATNRDL V+ Sbjct: 318 ADGGTLFLDEIGEISPSFQAKLLRVLQEGEFERVGGARTIKVNVRVVAATNRDLSAEVQK 377 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 FR+DLFYRL+V P+E+P LR+R ED+PLL + ++++ +R + +I EALR+LM Sbjct: 378 GNFRADLFYRLHVLPIEIPALRERMEDLPLLTEALLERISTKQHRPL-SITKEALRRLMM 436 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRL----LPTL------NEDSALRSS 607 ++W GNVRELEN +ERA +L+ ++ + S +P L N S S Sbjct: 437 YEWAGNVRELENCLERAAVLSDEGHIDASHIIFSSGANREPMPALTNHRIHNASSCALPS 496 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 A L PT EER+R++ L ++ + A AA LGM + R++ L I +R Sbjct: 497 SADLSDPTL-----EERERVMGALEQSGWVQA---KAARLLGMTPRQVAYRIKILNIPMR 548 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 136/258 (52%), Positives = 183/258 (70%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 LQ++ L E++ +I+ + + + + V A + +TVLI GE+GTGKE+ A+ Sbjct: 133 LQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQ 192 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 A+H+ SPR DK +K+NCAA+ +LLESELFGH+KGAFTGAI GRFE+ADGGTLFLD Sbjct: 193 ALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLD 252 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIGD+ LQ KLLRVLQ+RE ER+GG++T+ V+VR++AATNRDL V++ +FR DL+Y Sbjct: 253 EIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYY 312 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV + LPPLR R DIP L HF K ++ + I + L ++S DWPGNVRE Sbjct: 313 RLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVRE 372 Query: 567 LENVIERAVLLTRGNSLN 584 LENV+ERAV+L +G+ L Sbjct: 373 LENVVERAVVLCKGSELT 390 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 137/242 (56%), Positives = 178/242 (73%), Gaps = 1/242 (0%) Query: 343 GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402 G I+ S A+ +LQ+V+IVA+SD TVL+ GE+GTGKE+ A+AIHQ SPR KP VK+ Sbjct: 212 GYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTGKELFAQAIHQASPRHRKPFVKL 271 Query: 403 NCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRV 462 NCAA+P S+LESELFGH+KGAFTGAI +GRFE+ADGGTLF+DEIG++ Q KLLRV Sbjct: 272 NCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADGGTLFMDEIGEISPSFQAKLLRV 331 Query: 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522 LQE E ER+GG+RT+ V+VRV+ ATNR+L + V +FR+DL+YRL+V P+ LPPLRDRP Sbjct: 332 LQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRFRADLYYRLSVIPIFLPPLRDRP 391 Query: 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS 582 DIP+LA F ++ NR I ++ + L + +PGNVRELEN I R L G + Sbjct: 392 TDIPMLANEFLRRF-NETNRTSLTIASDGMDVLTTCYFPGNVRELENCIRRTATLAPGQT 450 Query: 583 LN 584 + Sbjct: 451 IG 452 >UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSM1_HALO1 Length = 557 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 157/353 (44%), Positives = 219/353 (62%), Gaps = 9/353 (2%) Query: 317 WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 + + +++ LQ EN L E + +++ +S AM + ++ VA + + VLI GE Sbjct: 203 FEQVDEMRRQLQAENAYLREVVADR--DHEMVGESTAMAHVRGEIQAVAPTHANVLILGE 260 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 +GTGKE++ARA+H+ S R PL+++NCA++ L ESE FGH KGAF+GAI G FE Sbjct: 261 SGTGKELVARAVHRASRRAAGPLIEVNCASVVRELAESEFFGHTKGAFSGAIRDRAGWFE 320 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 A+GGTLFLDEI +LPLELQ KLLRVLQE R+G +RT +VR++AATNRDL + V Sbjct: 321 AAEGGTLFLDEIAELPLELQGKLLRVLQEGRYARVGETRTRDADVRIVAATNRDLKEEVA 380 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 +FR DLFYRLNVFP+ +PPLRDR D+P LA H ++ R M + E L +L Sbjct: 381 AGRFREDLFYRLNVFPIRVPPLRDRAGDMPALAGHLLAQICRAMKVPPVTLDNEQLGRLQ 440 Query: 557 SWDWPGNVRELENVIERAVLLTRGN----SLNLHLNVRQSRLLPTLNEDSALRSSMAQLL 612 + WPGNVREL NV+ERAV++ ++ + + S P++ +A R+ ++ Sbjct: 441 AHTWPGNVRELRNVLERAVIVAASRKGPVAVRIDASTDASGAQPSV-ASAAGRADAGRV- 498 Query: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 T E E ER+ I L G V GP GAA LG+K TTL SR++R G++ Sbjct: 499 -ATLSELRERERENIAAALDACGGRVYGPSGAAALLGVKPTTLASRIKRYGLA 550 >UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammaproteobacteria RepID=A5F6B9_VIBC3 Length = 488 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 172/433 (39%), Positives = 248/433 (57%), Gaps = 47/433 (10%) Query: 268 LLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 L+ LT NH P LL+A+ E + + + ++ +E L Sbjct: 65 LIQSLTKANHIP--LLVANKQPYSLEE-----FPNYVGELDFPLNYPQLSDALRHCKEFL 117 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 ++ Q+ N ++ QS ++++ ++ V+ +++ VLI GE+GTGKEV+AR Sbjct: 118 GRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARN 177 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH S RR+ P V INC AIPA LLESELFGH+KGAFTGAI +GRFE+A+GGTLFLDE Sbjct: 178 IHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDE 237 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IGD+P+ +Q KLLRVLQER ER+GG+ TI NVRVIAAT+R+L +M++ ++FR DL+YR Sbjct: 238 IGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYR 297 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 LNVFP+E+P LRDR +DIPLL + +M + I P A+ +M DWPGNVREL Sbjct: 298 LNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTP-RAINSMMEHDWPGNVREL 356 Query: 568 ENVIERAVLLTRGNSLNL-HLNVR-QSRLLPTLNEDSALRSSMAQ----LLHPTTPEN-D 620 N++ER V+L + +++ HL + + +P + + SS+ + +L E+ + Sbjct: 357 ANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFN 416 Query: 621 EEERQRIV-----------------------------QVLRETNGIVAGPRGAATRLGMK 651 EE Q V Q L G+VA AA LGM+ Sbjct: 417 FEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVA---RAADMLGMR 473 Query: 652 RTTLLSRMQRLGI 664 RTTL+ +M++ + Sbjct: 474 RTTLVEKMRKYNM 486 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 151/346 (43%), Positives = 221/346 (63%), Gaps = 14/346 (4%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 +E++ +EN +L + L +N G+++ + M + +QV VA SD+TVLI G +GTGKE+ Sbjct: 173 REAMLEENRKLRDMLSNN--PGELVGNCREMRQVYEQVRQVAPSDATVLIRGGSGTGKEM 230 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 IARAI LS R+DKP + +NCAA+P +L+ESELFGH+KGAFTGA+N GR E A+GGTL Sbjct: 231 IARAIVNLSARKDKPFITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEAANGGTL 290 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDE+GDL ++ Q KLLR LQER R+G + + +VR +AAT+R+L +++ +FR D Sbjct: 291 FLDEVGDLTMQTQVKLLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQGKFRED 350 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLN+FP+ +P L R DI LLA+HF +KM N+ + + T A+ LMS+ WPGN Sbjct: 351 LFYRLNIFPITMPDLAKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMSYHWPGN 410 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRS---SMAQLLHPTTPEND 620 VRELEN IER VL + ++ + L P+L ++ S + + + P D Sbjct: 411 VRELENCIERGVLTATDDCIHSY------NLPPSLQTSLSVGSVGGTPSDKIAPLEVMMD 464 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 ER+ I + ++ +G ++ A LG+ + RM +LGI + Sbjct: 465 NYEREIITEAIKRNDGNIS---AAGRDLGVSPRMMNYRMNKLGIKL 507 >UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammaproteobacteria RepID=A4VMJ3_PSEU5 Length = 504 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 154/343 (44%), Positives = 222/343 (64%), Gaps = 25/343 (7%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 ++ S+A++ + Q ++ VA ++++VLI GE+GTGKEV+AR +H S RR P V +NC A Sbjct: 161 LVGTSRAVQHVRQMMEQVADTEASVLILGESGTGKEVVARNLHYHSKRRQGPFVPVNCGA 220 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IPA LLESELFGH+KGAFTGAI GRFE+A+GGTLFLDEIGD+PL +Q KLLRVLQER Sbjct: 221 IPAELLESELFGHEKGAFTGAITARAGRFELAEGGTLFLDEIGDMPLPMQVKLLRVLQER 280 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 ER+G +RT +VR+IAAT++DL +M+E+ FR DL+YRLNVFP+E+ PLR+R EDIP Sbjct: 281 TFERVGSNRTQNADVRIIAATHKDLEKMIEEGTFREDLYYRLNVFPIEMAPLRERVEDIP 340 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL- 585 LL +M H R + A+ L DWPGNVREL N++ER ++ + + Sbjct: 341 LLMNELISRM-EHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERMAIMHPYGVIGVM 399 Query: 586 -------HLNVRQSRLLPTLNEDSALRSSM--------AQLLHPTTPENDEE-----ERQ 625 H++ + +L+++ R+++ AQ + P + +E E+ Sbjct: 400 ELPKKFRHVDDDDEQYATSLHDEMEERAAISAPMVVPEAQAMLPVEGLDLKEYLGNLEQG 459 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 I Q L + G+VA AA RL ++RTTL+ +M++ G++ R+ Sbjct: 460 LIHQALEDAGGVVA---RAAERLRIRRTTLVEKMRKYGMNRRD 499 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 154/327 (47%), Positives = 211/327 (64%), Gaps = 24/327 (7%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 IIYQS AME++L+ V +A + S+VLI GETGTGKEVIA+AIH S R K + ++CAA Sbjct: 153 IIYQSVAMENVLRTVQQIAPARSSVLITGETGTGKEVIAKAIHAASTRSKKAFIAVHCAA 212 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 + A+L ESELFGH+KG+FTGA GRFE ADGGTLFLDEIG++ Q KLLR+L+ R Sbjct: 213 LNANLFESELFGHEKGSFTGANEKRIGRFEAADGGTLFLDEIGEIDAATQVKLLRILESR 272 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 ER+GG+ T+ + R+IAATNRDL +MV+ +FR DL+YRL+V LELPPLRDR EDIP Sbjct: 273 SFERVGGNETLYSDARLIAATNRDLRKMVQAGEFREDLYYRLDVINLELPPLRDRREDIP 332 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL- 585 L +H+ + +A+ +L ++DWPGNVREL NV+ER +L++ L+L Sbjct: 333 ALLQHWLISSVTENQLNVKGFTADAMARLCTYDWPGNVRELRNVVERMAVLSQQEYLDLP 392 Query: 586 ----HLNVRQSRLLPTL---NEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 H+ + + +L T ++D AL + E E+ I++ L+E+N Sbjct: 393 NLPDHVLLGEQQLSETAKIEDKDKALDVA-------------ENEKVLILKALKESNN-- 437 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGIS 665 AA RLGM R TL R+++ GI+ Sbjct: 438 -NRTLAAERLGMSRRTLHRRLKQFGIT 463 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/338 (45%), Positives = 220/338 (65%), Gaps = 9/338 (2%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 LQ EN L +L N ++ S AME L Q+ VA + +++LI GE+GTGKE++A Sbjct: 121 KLQNENWLLRRELEQNRD-RTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVA 179 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 +A+H+LSPR +K LV INCAA +LLESELFGH++GAFTGA+ +G E++DGGTLFL Sbjct: 180 QALHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFL 239 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIG+ PL LQPKLLRVLQE+ R+GG+ I ++R+IAAT+R+L QM+ + FR DL+ Sbjct: 240 DEIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLY 299 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNV L LPPLR R EDIPLL++ F ++++R M + + ++A L ++WPGNVR Sbjct: 300 YRLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVR 359 Query: 566 ELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 EL+N++ER +L G +L HL + P N S + A L PE+ E Sbjct: 360 ELQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCS---ETAAMPLQQPLPEHLETIE 416 Query: 625 QRIVQ-VLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 Q+++Q L + G+ A AA LG+ R+ L ++++ Sbjct: 417 QKLIQAALIDARGVQA---KAAELLGISRSNLQYKLKK 451 >UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIF3_SORC5 Length = 460 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/325 (47%), Positives = 210/325 (64%), Gaps = 16/325 (4%) Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 +G++I +S+AM DL +Q+ AK+ +TV + GE GTGKE++ARAIH S R PL K+N Sbjct: 138 VGELIGESRAMLDLREQIARAAKATATVFVTGERGTGKELVARAIHGASKRARGPLEKMN 197 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAA+P+ L+ESE+FGH+ GAFTGA RG+FE A GGTLFLDE+GD+PL +Q KLLRVL Sbjct: 198 CAAVPSELIESEMFGHEAGAFTGATKQRRGKFERASGGTLFLDEVGDMPLAMQAKLLRVL 257 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QEREIER+GG TI V+VRV+AATNRD+ + QFR DL+ RLNV PL LPPLR R E Sbjct: 258 QEREIERVGGHETIKVDVRVVAATNRDIEAACREGQFRPDLYDRLNVLPLSLPPLRARRE 317 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 D+P LA+HF + +R A + L+++ +PGNVREL N+IER V+LT ++ Sbjct: 318 DVPQLARHFLALATQANDRPGMAFTDGGMGVLVAYSFPGNVRELRNIIERLVILTPDETI 377 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN---DEEERQRIVQVLRETNGIVAG 640 + +V+ + + +A++ L P P +E ER +L E G G Sbjct: 378 D-EGDVK----VCLGGQQAAMKGG---LFRPGVPFRVLAEEAER----AILEEALGHHGG 425 Query: 641 PRGAATR-LGMKRTTLLSRMQRLGI 664 A R LG++R+ L + + LG+ Sbjct: 426 QMAATARGLGLERSHLYKKFKALGL 450 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 157/336 (46%), Positives = 209/336 (62%), Gaps = 23/336 (6%) Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 G ++ +S AM L Q ++ VA +D+TVLI GE+GTGKE++AR ++ SPRR + +K+NC Sbjct: 140 GILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFYRRSPRRSQAFIKVNC 199 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AAI +L+ESE FGH++GAFTGA GRFE+A GTL LDE+ ++P LQ KLLRVLQ Sbjct: 200 AAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQ 259 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 ERE ER+GGSRTI VNVR+IA +NRDL + VE +FR DL+YRLNVFP+ +P LR+RPED Sbjct: 260 EREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPED 319 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR----- 579 I LLA HF ++ AR + A L+ + WPGNVREL+N +ERAV+L+ Sbjct: 320 IALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVRELQNTVERAVILSETGRAV 379 Query: 580 --------GNSL--NLHLNVRQSRLLPTL-----NEDSALRSSMAQLLHPTTPENDEEER 624 G+ L L L + +P L E+ A S H + DE E+ Sbjct: 380 TAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTVTDSHGQVLKLDELEK 439 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 Q I LR+T G AA LG+ TL +++Q Sbjct: 440 QAIRAALRQTGG---NRTQAAAELGISIRTLRNKLQ 472 >UniRef50_B2A7L9 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7L9_NATTJ Length = 558 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 157/337 (46%), Positives = 209/337 (62%), Gaps = 26/337 (7%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 DII +SQ M + + A SDS+VLICGETGTGKE+ A++IH S R KP + INCA Sbjct: 228 DIIGESQQMRKAKELGEAAASSDSSVLICGETGTGKELFAQSIHNASYRCSKPFIAINCA 287 Query: 406 AIPASLLESELFGHDKGAFTGAINTH-RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 A+P SL+ES LFG+ +GAFTGA G FE A+ GTLFLDEI ++ L+LQ KLLRVLQ Sbjct: 288 ALPPSLIESNLFGYVEGAFTGAKKGGATGVFEKANNGTLFLDEISEMDLDLQSKLLRVLQ 347 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 E+E+ R+GG + IP+N+R+IAATNR+L M++ QFR DLF+RLNV ++LPPLRD ED Sbjct: 348 EKEVTRIGGRKVIPLNLRIIAATNRNLEDMIQKGQFRRDLFFRLNVIEVKLPPLRDMKED 407 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 IPLL KM +AI + EAL L+++DWPGNVREL N IERA L ++ Sbjct: 408 IPLLVNETIIKMNSIFGKAIKGVDKEALEMLINYDWPGNVRELYNCIERAFNLIGDDNY- 466 Query: 585 LHLNVRQSRLLPTLNEDSAL--RSSMAQLL----HPTTPEND-----------EEERQRI 627 +R+ L N + + ++ M ++ +P +ND E+Q I Sbjct: 467 ----IRKKHLNFKFNNGNGITAQNYMEEIEDTEGNPINLDNDTGQRSLDDIVANYEKQVI 522 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 VL+E GI A AA RL + TL +M++L I Sbjct: 523 EAVLKEVKGIRA---KAAKRLNISPATLWRKMKKLNI 556 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 155/334 (46%), Positives = 204/334 (61%), Gaps = 12/334 (3%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 SL+ E +L + +II S+ M+ +L QV +A +DSTV + GE+GTGKE+IA Sbjct: 123 SLRMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIA 182 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 + +H S R P V INC AIP LLESELFGH KGAFTGA +G + A+ GTLF+ Sbjct: 183 KVLHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTLFM 242 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEI +L LQ KLLRV Q+ E +GG + + V+ R++AATN+DLW+ ++D +FR DL+ Sbjct: 243 DEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLY 302 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YR++V P+ LPPLR+RPEDIPLLA HF Q MN+ I +A+ +LM WPGNVR Sbjct: 303 YRIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVR 362 Query: 566 ELENVIERAVLLTR-GNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 EL NV+ERAV+L R GN HL L E A+ S + L P T DE ER Sbjct: 363 ELANVVERAVVLAREGNICAEHL----------LLEREAVSDSGTE-LPPLTAARDEFER 411 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 ++QVL T G V+ A R + LL + Sbjct: 412 AYLIQVLHSTKGNVSRAAAKAGRYRAEFYKLLRK 445 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 153/338 (45%), Positives = 209/338 (61%), Gaps = 12/338 (3%) Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 D I +A+GNA + SL+++N + +I+ S AM L + +V Sbjct: 109 DDIRVAIGNAVE-------RGSLKRQNLAYKRDAAGRNSLDNIVGTSPAMGKLKNTIRMV 161 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 A + STVLI GE+GTGKE++ARA+H SPR +P INC A P +LLESELFG+ KGAF Sbjct: 162 ASTGSTVLIHGESGTGKELVARAVHTCSPRAGEPFTSINCGAFPETLLESELFGYVKGAF 221 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA+ RG FE++ GGT+FLDEI ++ L +Q KLLRVLQER I +GG+ IPV+VRVI Sbjct: 222 TGAVQNKRGLFEVSTGGTIFLDEISEMTLTMQVKLLRVLQERCIRPVGGTSEIPVDVRVI 281 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 AATN++L V D FR DL+YRL+V P+++PPLR+R +DI LLA HF +K A ++I Sbjct: 282 AATNKNLDAQVADGVFREDLYYRLSVIPVQVPPLRERVDDIELLANHFLKKYAPAAGKSI 341 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL 604 AI E+L L +DWPGNVR+LEN IERAV L + L++ + + + P A Sbjct: 342 RAIRVESLGDLREYDWPGNVRQLENTIERAVALEMSDVLHVEIPTERQKNKPAAAAAVAG 401 Query: 605 RSSMAQLLHPTTPENDEE-----ERQRIVQVLRETNGI 637 S Q+ + E ER + Q L++ NG+ Sbjct: 402 FSGNGQVAINADGIDMEAYVANIERSLLQQALKQANGV 439 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 154/321 (47%), Positives = 201/321 (62%), Gaps = 11/321 (3%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 I+ S+AM+D L+ I ++ DST LI GE+GTGKE+ A+AIH S R P V +NC A Sbjct: 349 ILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKELFAQAIHNASERCGGPFVAVNCGA 408 Query: 407 IPASLLESELFGHDKGAFTG-AINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 IP L++SELFG+ +GAFTG A G+FE+ADGGT+FLDEIGD+P + Q LLRVLQE Sbjct: 409 IPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGGTIFLDEIGDMPFDAQASLLRVLQE 468 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 E+ R+G R+ PV+VR++AATNR+L + V D FR DL+YRLNV L +PPLR R EDI Sbjct: 469 GEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFREDLYYRLNVLSLSVPPLRMRREDI 528 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 P LA+HF ++ AR + + + I EAL LM+ WPGNVRELEN IERA L G + Sbjct: 529 PTLAQHFLERCARSLRKPVRGIVREALDILMAHAWPGNVRELENTIERAANLAGGELI-- 586 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 ++ LP A R++ + + E I LRE G V R AA Sbjct: 587 -----EAEDLPLELAQVARRAAEPAVRCGAAMDLGSHEMNAIAAALRECRGNV---RLAA 638 Query: 646 TRLGMKRTTLLSRMQRLGISV 666 RLG+ R L ++M R G+S Sbjct: 639 KRLGVSRGGLYNKMNRYGLSA 659 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 150/346 (43%), Positives = 224/346 (64%), Gaps = 18/346 (5%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L++EN L +++ + ++ +S + +L++ + IVA +++ +LI GE GTGKE++AR Sbjct: 123 LEEENVLLKQKINRDY---ELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVAR 179 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH+ S R DKP+V++NCAAIP L+ESELFGH+KGAFTGA RG+F+IA GT+FLD Sbjct: 180 AIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLD 239 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 E+ D+ L+ Q K+LR+LQE++ ER+GG++ I ++VRV+AATN+DL + +E+ +FR DLFY Sbjct: 240 EVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFY 299 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV PL++PPLR R EDIPLLA+ F A I +AL LM WPGNVRE Sbjct: 300 RLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRE 359 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS----ALRSSMAQLLHPTTPENDEE 622 L+N IER ++T N + +H +P L D R +LL + E + Sbjct: 360 LKNFIERLAIMTTSNVITVH-------DIPPLPRDGHKVEPFREPGFELLAGSFREAKMD 412 Query: 623 -ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 E+Q I + LRE +G ++ A +G++R+ L +++ G+ + Sbjct: 413 FEKQYISRKLREFDGNIS---KTAESIGLERSNLHKKIKAYGLESK 455 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 161/394 (40%), Positives = 239/394 (60%), Gaps = 48/394 (12%) Query: 287 TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES---LQQENHQLSEQLLSNLG 343 T++ F ++N +I ++I+ D + T+L+++ LQ+ +LS +++L Sbjct: 205 TATPFFDKDN-----NIKRIVSISKDITDEEKLKTELKQTKELLQKYEEELSSLRIAHLK 259 Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 +IIY+S+ ME L++ V+ VA ++ST+LI GETG GKEV+A+ IH +S R + P +KIN Sbjct: 260 NSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVLAKYIHNIS-RSEGPFIKIN 318 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRV 462 C AIP +LLE+ELFG++KGAFTGA + + G E+AD GTL LDEI +LPL LQ KLLRV Sbjct: 319 CGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLRV 378 Query: 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522 LQE+E R+GG + I V+VR+IAA+N+DL ++V++ +FR DL+YRLNV P+ +PPLR+R Sbjct: 379 LQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRERV 438 Query: 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS 582 +DIP+LA HF + + E + M + WPGNVRELENVIER V+++ + Sbjct: 439 QDIPILAYHFLNMYNEKYGHS-KQLTNEVMEIFMKYPWPGNVRELENVIERIVIISENDQ 497 Query: 583 L---------------NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 + N V SRL+P L E SAL E Q I Sbjct: 498 ITKKDLPGELLNQEETNHSFGVHVSRLMP-LKEASALV-----------------EYQLI 539 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 Q + E AA LG+ ++T++ ++++ Sbjct: 540 KQAIEEC----GSSYKAAEVLGVDQSTIIRKLKK 569 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 142/279 (50%), Positives = 188/279 (67%), Gaps = 8/279 (2%) Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 D +++ V A +++ D +L+ E L D+I QS M + + V+ V Sbjct: 113 DEVSLTVAKAAERKALKDRTRALE-------EALTVRSQFEDLIGQSTQMRSVFKLVETV 165 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 + S +TVLI GE+GTGKE++ARAIH S R+DKP V +NC+A+ +LLESELFGH KG+F Sbjct: 166 SHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNCSALTETLLESELFGHVKGSF 225 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA +G FE ADGGT+FLDEIGD+P Q +LLRVLQE E++R+G + + V+VRVI Sbjct: 226 TGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRVLQEGEVKRVGANEPVKVDVRVI 285 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 AAT+ DL + E +FR DLFYRLNV ++LPPLRDRPED+PLLA HF + A ++ + Sbjct: 286 AATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRPEDVPLLAHHFLKLYASKADKKV 345 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 I A+ L W GNVRELENVIERAV+LT GN + Sbjct: 346 TGISPRAMEALTCNRWTGNVRELENVIERAVVLT-GNEV 383 >UniRef50_Q01Q08 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q08_SOLUE Length = 428 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 159/364 (43%), Positives = 225/364 (61%), Gaps = 30/364 (8%) Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 DR+ +AV NA Q +L+QEN +L E + S +I + A + ++Q + Sbjct: 89 DRVLLAVKNAME-------QSTLRQENERLRELVGST---PKMIGATPAWQRAVEQASMA 138 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 A+SD+ VL+ GE+GTGKE++A IH SP + P VK+NCAAIP LLE+ELFGH+KG+F Sbjct: 139 ARSDARVLLIGESGTGKELLAAHIHSASPFANGPFVKVNCAAIPTELLETELFGHEKGSF 198 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA N RG+FE+ADGGT+FLDE+GDL Q KLLRVLQE E R+GG I V+VRV+ Sbjct: 199 TGATNMRRGKFELADGGTIFLDEVGDLHGGSQAKLLRVLQEGEFHRVGGEAIIRVSVRVV 258 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 +ATNRDL MV +FR DL+YRL+V P+ +P LR+RP DI LLA++F ++ N Sbjct: 259 SATNRDLQAMVAAEKFREDLYYRLSVVPIRVPALRERPHDIRLLAEYFLEEFCSRNNFKR 318 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN---LHLNVRQSRLLPTLNED 601 + L ++ WPGN REL NV+ER +LT G L + + VR R + Sbjct: 319 KVMDESVYPMLEAYHWPGNARELRNVVERMAILTPGERLTRDAIPVEVRVQR-------E 371 Query: 602 SALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 + +S++ + + ER+ I++ L E++ V+ GAA LGM+RT L R++ Sbjct: 372 AGPKSTIQEA-------RESAEREHILRALEESSWNVS---GAARTLGMERTNLHKRIRA 421 Query: 662 LGIS 665 LG++ Sbjct: 422 LGLT 425 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 158/358 (44%), Positives = 218/358 (60%), Gaps = 18/358 (5%) Query: 316 AWRSMTDLQESLQQEN--HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 A +MTDL E ++EN QLS L ++ S M + ++ A+SD+ V I Sbjct: 132 AVETMTDLSELDRKENELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFI 191 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 GE+GTGKE++ARAIH L PR D+P V+ NCAA+ +LLESELFGH KGAFTGA +G Sbjct: 192 YGESGTGKELVARAIHDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQG 251 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 RFE A GG +FLDEIGDLP+ +Q KLLRVL+ + ER+G +R + V+VR+I ATN+ L + Sbjct: 252 RFEAAHGGDIFLDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPE 311 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 ++ QFR DLFYR+NV P+ LP LR+R EDIPLLA +F Q++ ++ I + + LR Sbjct: 312 LISQGQFREDLFYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLR 371 Query: 554 QLMSWDWPGNVRELENVIERA-VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLL 612 M + WPGNVREL++ +E A VL G+ HL P + E Sbjct: 372 LFMDYSWPGNVRELKSSLEYAFVLADHGHIEPEHLPHNVVVTAPPVAEPRY--------- 422 Query: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 P +D +RQ++VQ L + G AA LG+ R T+L+RM++ GI + V+ Sbjct: 423 --GNPGHD-SQRQQLVQALHQAGG---NKSEAARILGINRVTVLNRMRKHGIDMTRVI 474 >UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=B8DNW7_DESVM Length = 528 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 140/258 (54%), Positives = 184/258 (71%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L +EN L +L + I+ SQAM + + S++T+LI GE+GTGKE+IA+ Sbjct: 122 LLEENENLRRRLSDDDPTAPIVGASQAMCRVRDFIRQAGPSEATILIMGESGTGKELIAQ 181 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 +H S R D+PLVK+NCAA+P LLESELFG+ KGAFTGA+ GRF++A GGTLFLD Sbjct: 182 GLHDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKPGRFQLARGGTLFLD 241 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG+LPLELQ KLLR LQER +E LG R +PV+VR+IAATNRDL + VE +FR DLF+ Sbjct: 242 EIGELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEFREDLFF 301 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV + PPLRDR ED+P+LA +++ R + I ++ E L LM + WPGNVRE Sbjct: 302 RLNVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSWPGNVRE 361 Query: 567 LENVIERAVLLTRGNSLN 584 LENV+ERA++L+R ++L Sbjct: 362 LENVLERALILSRSDTLG 379 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 156/379 (41%), Positives = 232/379 (61%), Gaps = 20/379 (5%) Query: 297 CQLLQHIADRIAIAVGNADAWRSMTDLQES---LQQENHQLSEQLLSNLGIGDIIYQSQA 353 Q ++H A N D R + D L EN L EQ+ + G G ++ ++ Sbjct: 100 VQAMKHGAFDYVTKPFNMDELRILLDRVTGHLKLTTENRMLREQVKARHGFGGMVGRAPE 159 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 ME L + + A S VLI GE+GTGKEV+ARA+H +DKP + ++C ++ +L+E Sbjct: 160 MERLYRIITKAANSTHPVLIMGESGTGKEVVARAVHYTGCYKDKPFIPVDCGSLVPTLIE 219 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 SELFG+ KGAFTGA ++ +G +ADGGT+FLDEIG+LP++LQ KLLR LQE+EI +GG Sbjct: 220 SELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDEIGELPIDLQSKLLRALQEKEIRPVGG 279 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 +R +P+NVR++AATNRDL Q V+ FR DL++RLNV L +PPLRDR +DIPLL HF Sbjct: 280 TRAVPINVRILAATNRDLEQAVQQGTFRRDLYFRLNVLTLRIPPLRDRKQDIPLLVGHFL 339 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 ++ R + I EAL+ ++++DWPGNVRELE+ ++RA LT G ++N + Sbjct: 340 ERTERATGFQRN-ISDEALKLMLTYDWPGNVRELEHCLDRACALTSGPTIN-------TL 391 Query: 594 LLPTLNEDSALRS-SMAQLLHPTTPEND-----EEERQRIVQVLRETNGIVAGPRGAATR 647 LPT ++ +++ ++ P P N E E+Q I++ + +G AA Sbjct: 392 DLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQAILEAIERLHG---DKLEAARL 448 Query: 648 LGMKRTTLLSRMQRLGISV 666 LG+ +TTL +++ G ++ Sbjct: 449 LGIGKTTLYRKLKEYGAAI 467 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 216/339 (63%), Gaps = 32/339 (9%) Query: 327 LQQENHQLSEQLLSNLGIGDIIY-QSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 +QQ+N ++L D I+ +S + +L V ++ + VLI GETG GK ++A Sbjct: 211 IQQDNMSFCDKL-------DYIFTKSPTFQKVLDLVKSCSEHNVNVLIEGETGIGKSLLA 263 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 + IH LSPRRD P VK+NCAAIP +LLE+ELFG+ KGAFTGA G+ EIADGGTLFL Sbjct: 264 KYIHLLSPRRDAPFVKVNCAAIPENLLEAELFGYVKGAFTGATKDKPGKAEIADGGTLFL 323 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+PL LQ K+L +++E+E ERLG + N R+IA+TN+D+ +++ +FR DL+ Sbjct: 324 DEIGDMPLSLQAKILHLVEEKEFERLGSNTPRKTNTRIIASTNKDIKELMRQGRFREDLY 383 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRL+V + LPPLR+R EDIPLL +F +K ++ ++ + +I +A++ L+ +D+PGN+R Sbjct: 384 YRLSVVNIYLPPLRERKEDIPLLINNFIEKYSKLYSKRVKSISGDAIKMLLGYDFPGNIR 443 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 ELE++IE+AV+ RG+ +N+ ED +L + +EE++ Sbjct: 444 ELEHIIEKAVITCRGSIINI--------------EDISLD-------FQSNNHKQQEEKE 482 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 RI VL + N AA LG+ RTTL +++ LGI Sbjct: 483 RIKAVLEKVN---YNKSLAAKMLGIHRTTLWRKLKELGI 518 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 157/357 (43%), Positives = 220/357 (61%), Gaps = 30/357 (8%) Query: 332 HQLSEQLLSNLGIGDIIY----QSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 H L +++ D Y S +++ + VA++D+TVLI GE+G GKE+ A+A Sbjct: 192 HNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELFAQA 251 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFLD 446 IHQ S R +KP + INC AIPA+L ESELFG+ GAFTGA + G+ E+A GGTLFLD Sbjct: 252 IHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGTLFLD 311 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG+LPLELQ KLLR LQER+ R+GG+ I VN R++AATNR L QMV D +FR DL+Y Sbjct: 312 EIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFREDLYY 371 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNVF LE+PPLR+R ED+P L + F + + ++++ I E ++ L + WPGN+R+ Sbjct: 372 RLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWPGNIRQ 431 Query: 567 LENVIER-AVLLTRGNSLNLHL-NVRQSRLLPT----------------LNEDSALRSSM 608 L NVIER ++L G L HL +V +S PT +R S+ Sbjct: 432 LRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPIIRPSI 491 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 A + +P++P N E++RI+ L T G + AA LG+ R TL ++M++ I+ Sbjct: 492 A-IAYPSSPAN---EKERILAALERTYG---NKKAAAELLGVSRGTLYNKMKKFNIN 541 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 149/349 (42%), Positives = 220/349 (63%), Gaps = 13/349 (3%) Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 DL SL N + + S +I+ S M+++ + + K D+TVL+ GE GTGK Sbjct: 128 DLISSLAMSNPVFDDDIES-----EIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGK 182 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E++ARAIH SPR+ V INC AIP +L+ESELFGH+KGAFTGA+ G+F++A+ G Sbjct: 183 ELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNG 242 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDEIG+L ++Q KLLRVLQER+ +G +R + R+IAATNR+L +M+E+ +FR Sbjct: 243 TLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFR 302 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DLFYRLNV P+ LPPLR+R +DI LA +F +K ++ R I AI EAL L S+ WP Sbjct: 303 EDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWP 362 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE--N 619 GN+RELEN+IER+ ++ + + + +L P +D A +++ P + Sbjct: 363 GNIRELENIIERSFIVENSHQITVDSLPDSIKLTP---KDGADKTASVGYSGPLDFDAFK 419 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 +E E++ IV L+ NG + + + + TLL ++++ GI+V+E Sbjct: 420 EEMEKEFIVSALKANNGRI---NQTVAQANIPKNTLLRKIRKYGINVKE 465 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 130/229 (56%), Positives = 171/229 (74%) Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 LL++ VA S +TVL+ GE+GTGKEV AR IH +S R+ P V +NCAA+P LLESEL Sbjct: 162 LLERARTVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESEL 221 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FGH+KGAFTGA+ +G+FE+A GGTL LDEIG++PL LQ KLLRVLQE E++RLGG Sbjct: 222 FGHEKGAFTGAVMAKKGKFELAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEP 281 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 + V+V V+A TNRDL + V+D FR DL+YRLNV P+ LP LR+RP+DI LLA F +K Sbjct: 282 VKVDVHVVATTNRDLAEAVKDGTFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKH 341 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 +R N+ + + A ++ + +DWPGNVRE+EN++ER VLL+ G+ L L Sbjct: 342 SRRYNKPLKKLSAAARQRFLDYDWPGNVREMENLLERGVLLSNGDELEL 390 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 143/340 (42%), Positives = 217/340 (63%), Gaps = 11/340 (3%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 +L++E LSE + I+ S M+++ ++D VAK+D VLI GE+GTGKE+IA Sbjct: 122 TLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIA 181 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 AI + S R++KP +KINCAAIP +L ESELFG++KGAFTGA T +G+FE+A+GGT+F Sbjct: 182 NAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFF 241 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+PL LQ KLLRV+++ + RLGG I +NVR I AT+++L ++++ +FR DLF Sbjct: 242 DEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLF 301 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YR+NV P+ +PPL++R EDIP+L + F + + + I A L+S+D+PGNVR Sbjct: 302 YRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVR 361 Query: 566 ELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 EL++ IERA+LL++ +++ HL S L + S+ + + + E+ Sbjct: 362 ELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISNFSLKECI-------ENFEK 414 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 I++ L+E AA +LG+ R L +++ GI Sbjct: 415 NLIIKALQECGW---KKTEAAKKLGISRKALWEKIKFYGI 451 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 140/255 (54%), Positives = 188/255 (73%), Gaps = 1/255 (0%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + +L+QEN L Q+ I+ +SQAM ++ Q V VA + +TVL+ GE+GTGK + Sbjct: 175 EAALKQENTSLKYQIARENHGPYIVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTL 234 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 I R IH+LS R+ P +K+NCAAIP +LLE+ELFG++KGAFTGA +T GRFE A GT+ Sbjct: 235 IGRIIHELSDRKTHPFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTI 294 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG+LPL LQ KLLRVLQERE ER+G ++T V+VR+I+ATNR+L +V FR D Sbjct: 295 FLDEIGELPLTLQSKLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFRED 354 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRLNVFP+ +P +R+R EDIP L HF ++M R R++ + T AL L+++DWPGN Sbjct: 355 LYYRLNVFPVHVPAVRERKEDIPRLLNHFQKEMEREYGRSL-TLTTGALDLLLAYDWPGN 413 Query: 564 VRELENVIERAVLLT 578 VRELEN++ER V+LT Sbjct: 414 VRELENLVERLVILT 428 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 140/323 (43%), Positives = 205/323 (63%), Gaps = 7/323 (2%) Query: 342 LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 +G ++I QS +M++L + ++ VA + +++ GE+GTGKE++ RA+H RRD P VK Sbjct: 279 IGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERRDNPFVK 338 Query: 402 INCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 +NCAA+P +LESELFGH+KGAFTGA GRFE+A GTLFLDEIGD+ L +Q K LR Sbjct: 339 VNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSIQAKFLR 398 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 ++Q++E ER+GG++TI V+VR+I ATN+DL + V++ +FR DL+YRLN L +PPLR+R Sbjct: 399 IIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYVPPLRER 458 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 EDIP L HF ++ + ++ I E LM +DWPGNVRELEN +ERA++L G Sbjct: 459 KEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERAIILC-GK 517 Query: 582 SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGP 641 L + LN ++ E + + T N ER+ I++ L + + Sbjct: 518 DL-IRLNNLPISIVKNNKEFDESKHVTPIDIKEITIRN--MEREIIIEALEKCD---WNR 571 Query: 642 RGAATRLGMKRTTLLSRMQRLGI 664 + LG+ R TL ++M+ I Sbjct: 572 TKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 207/556 (37%), Positives = 287/556 (51%), Gaps = 63/556 (11%) Query: 129 PVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFG-L 187 PV S N EQQ L LL + D+T A LD + +AR++H G + Sbjct: 6 PVHDSVKNHHEQQ--LSLLYELAQIMNFTTDLTQA------LDKALKLMARQLHMMRGAI 57 Query: 188 ASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD- 246 +S G+ R + L ++L R + GE + + +++ +P + Sbjct: 58 TLISPHTGEIRTEAGYGLKPAELRRG------RYVRGEGIT-GRVIESGRPMYISNVSEE 110 Query: 247 -LFLWQ---RDPLLLLLASNGCESALLIPLTFGNHTPGALLLAH---TSSTLFSEENCQL 299 LFL + RD L+ G S + +P+ + GAL + H +TL E+ +L Sbjct: 111 PLFLNRTRSRD-----LSKEGI-SFICVPIRLNDQVVGALSVDHLLVDEATL--EDEMRL 162 Query: 300 LQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQ 359 L ++ T L + + ++ E+ S L + S+ M+ + Sbjct: 163 LTIVS----------------TLLGHAALETQGRMDEETSSPLRPRGFVGNSEGMQKVYA 206 Query: 360 QVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGH 419 Q+ VA S +TV + GE+GTGKE+ ARAIH S R KP + +NCAA+P +L+ESELFGH Sbjct: 207 QIAQVAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFISLNCAALPENLIESELFGH 266 Query: 420 DKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPV 479 ++GAFTGA T +GRFE+A GGTLFLDE+G+L L Q KLLRVLQER ERLGG T V Sbjct: 267 ERGAFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRVLQERAFERLGGMETHYV 326 Query: 480 NVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARH 539 +VR I ATNR+L MV FR DLFYRLNVFP+ LPPLR RPEDI LA HF +K A+ Sbjct: 327 DVRFITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRPEDILPLANHFIRKFAQA 386 Query: 540 MNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN 599 R + + L + WPGN+RELENV+ERAVLL L V L P L+ Sbjct: 387 NGRENVRLSLSVMDMLQRYAWPGNIRELENVMERAVLLLGREGL-----VLPQHLPPALH 441 Query: 600 ED--SALRSSMAQLLHPTTPEN-----DEEERQRIVQVLRETNGIVAGPRGAATRLGMKR 652 + + A P + DE ER IV+ L + G + AA LG+ Sbjct: 442 GAHCAGISGESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMG---KAAASLGLTE 498 Query: 653 TTLLSRMQRLGISVRE 668 + RM++ I+ +E Sbjct: 499 RIMALRMKKYEINYKE 514 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 138/238 (57%), Positives = 176/238 (73%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 +I S AM+++ +Q+ VA +D+TVLI GETGTGKEV+A IH S RR+ P+VK+NCAA Sbjct: 147 MIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIHVNSARRNGPMVKVNCAA 206 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +P SLLESELFGH+KGAFTGA+ +GRFE+A G++FLDEIG++ L Q KLLR+LQER Sbjct: 207 LPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLATQKKLLRILQER 266 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E ER+GG+ T+ V+VRVIAATNRDL V FR DL+YRLNV L LP LR R DIP Sbjct: 267 EFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQRIGDIP 326 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 LLA+ F K + I EA+ +L ++DWPGNVR+LE+ IERAV+L+RGN + Sbjct: 327 LLAEFFLDKYRYAPSSPPARISEEAMERLNNYDWPGNVRQLEHEIERAVILSRGNVIT 384 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 171/416 (41%), Positives = 251/416 (60%), Gaps = 38/416 (9%) Query: 266 SALLIPLTFGNHTPGAL-----LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSM 320 S L +PL G+ GAL +L F++E+ Q L IA +++ A+ + Sbjct: 133 SLLAVPLRDGD---GALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQS------- 182 Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 T L + LQ+ Q Q+ II +S ++ + + V A +D+TVL+ GE+G+G Sbjct: 183 TSLYQELQRAKEQ--PQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSG 240 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE+ ARA+H PRRD+P +K++CAA+PA+L+E+ELFGH++GAFTGA + G+FE A G Sbjct: 241 KELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASG 300 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GT+F+DEIG+LPL +Q KLLRV+Q+RE ER+GG++ + V+VR++AAT+RDL +MV + +F Sbjct: 301 GTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRF 360 Query: 501 RSDLFYRLNVFPLELPPLRDR-PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 R DL+YR+ V + LPPLR+R EDI LA+HF +AR + A+ +L + Sbjct: 361 REDLYYRIKVVEVVLPPLRERGAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYR 420 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH-PTTPE 618 WPGNVRELEN IE AV+L G L HL LP ++ + + AQ ++ PT P Sbjct: 421 WPGNVRELENCIESAVVLCEGEILEEHLP------LPDVDRAALPPPAAAQGVNAPTAPA 474 Query: 619 N--------DEEERQRIVQVLRETNGIVAGPRGAATR-LGMKRTTLLSRMQRLGIS 665 E ER+ I++VL V G R AA R L + R TL +++ G+ Sbjct: 475 PLDAGLLPLAEVERRHILRVL----DAVKGNRTAAARVLAIGRNTLARKLKEYGLG 526 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 162/354 (45%), Positives = 222/354 (62%), Gaps = 19/354 (5%) Query: 318 RSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 R D+Q L +EN +L E+L II S ME++ + +D VA +D+TVLI GE+ Sbjct: 121 RKALDMQ-GLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGES 179 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE++ARAIH S RR P V INCAAIP LLESELFGH KGAFTGA+ G+F Sbjct: 180 GTGKELVARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQ 239 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 A+ GTLFLDE+G+LP+ELQ KLLR LQE+E++ +GG+ TI ++VRV+AATN DL + + + Sbjct: 240 AEAGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAE 299 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FR DLFYRL+V P+ LPPLR+R EDIPLL +HF A+H ++ P E L + + Sbjct: 300 GRFREDLFYRLSVIPVHLPPLRERKEDIPLLVRHFA---AKHGGASVTFSP-EILAVMAA 355 Query: 558 WDWPGNVRELENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 + WPGNVRELEN +ER +++ +++ +L VR+ R S R L Sbjct: 356 YGWPGNVRELENTVERILIMRNADTIHPDDLPEKVRRGR--------SPQRECRVINLPD 407 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 ++ ER+ +V+ L N AA L + R TL+ RM++ I+ E Sbjct: 408 EGYSLEQLEREIVVEALERNNW---NQSSAARFLRIPRHTLIYRMEKYSITTPE 458 >UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q3J8M6_NITOC Length = 479 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 162/391 (41%), Positives = 232/391 (59%), Gaps = 35/391 (8%) Query: 310 AVGNADAWR------------SMTDLQESLQ-----QENHQLSEQLLSNLGI-GDIIYQS 351 +V ++WR S T+L +LQ +E HQ Q ++ + ++ S Sbjct: 89 SVSGKESWRLPGALGRLRYPFSQTELTSALQNAELFREGHQQKGQDRRSVELFRSLVGNS 148 Query: 352 QAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASL 411 +A + ++ VA S++TVLI GE+GTGKEV+AR +H S RR P V +NC AIP L Sbjct: 149 RATRTVRHLIEQVADSNATVLILGESGTGKEVVARNLHYHSSRRGNPFVPVNCGAIPGEL 208 Query: 412 LESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERL 471 LESELFGH+KGAFTGAI +GRFE+A GTLFLDEIGD+P+ +Q KLLRVLQER ER+ Sbjct: 209 LESELFGHEKGAFTGAITARQGRFELAQKGTLFLDEIGDMPMAMQVKLLRVLQERTFERV 268 Query: 472 GGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKH 531 G ++ I V+VR+IAAT+R+L + +++ FR DL+YRLNVFP+E+PPLR+R EDIPLL Sbjct: 269 GSNKLIHVDVRIIAATHRNLEEQLQEGNFREDLYYRLNVFPIEMPPLRERVEDIPLLINE 328 Query: 532 FTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH----- 586 ++ ++ P A+ L + WPGNVREL N++ER +L ++ + Sbjct: 329 IITRIEHEKGASVRLTPA-AVMALCQYPWPGNVRELANLVERLTILHPYGVVDHYDLPEK 387 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE--------ERQRIVQVLRETNGIV 638 + + P+ E ++L + L P P + ER I Q L E +G+V Sbjct: 388 YRIEGEGISPSAPELASLERVVDTLETPRLPREGLDLKKHLSCIERSLIKQALEEADGVV 447 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 A AA RL M+RTTL+ ++++ I +V Sbjct: 448 A---QAAHRLRMRRTTLVEKLRKYDIQREDV 475 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/234 (56%), Positives = 171/234 (73%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 I QS + D L + A+ +TVLI GE+GTGKE++A IH+ PR P +++NCAA Sbjct: 394 FIGQSGKVRDALAMAEKAAEGPATVLIRGESGTGKELVAEGIHESGPRSKGPFIRVNCAA 453 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP +LLESELFGH+KGAFTGAI G+FE+A GTLFLDEIG+L +Q KLLRVLQE+ Sbjct: 454 IPETLLESELFGHEKGAFTGAIKRKLGKFELAHKGTLFLDEIGELDKGMQAKLLRVLQEK 513 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 EI R+GG T V+V++IAATN+DL ++V + +FR DL+YRLNV P+ LPPLR+R EDIP Sbjct: 514 EISRIGGEETFTVDVKIIAATNQDLERLVAEGRFREDLYYRLNVIPILLPPLRERKEDIP 573 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRG 580 LL +HF Q+ R +A+ I ++AL LM + WPGNVREL N+IER V L+ G Sbjct: 574 LLVEHFLQQTGREQGKALRGIHSDALEALMHYSWPGNVRELANLIERVVTLSDG 627 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 163/403 (40%), Positives = 248/403 (61%), Gaps = 30/403 (7%) Query: 270 IPLTFGNHTPGALLLAHTSSTLFS-----EENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 +P+T T G L T LF EE+ QLL +A +A V R + D + Sbjct: 124 VPVTLQGTTVGVL----TVDRLFDQDISLEEDIQLLSIVAAMVAQFVS---LNRQVKDRE 176 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 E+L++EN L +L S+ I+ +S +M + Q ++ VA + +TVL+ GE+GTGK +I Sbjct: 177 ENLRRENQNLKTRLSSSFQRFFIVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLI 236 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A IH+LS R P +K+NCA++P +LLESELFG++KGAFTGA + GRFE A GT+F Sbjct: 237 AGIIHELSERGKFPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIF 296 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG++P LQ KLLR LQERE ERLGG +T V+VRVIAATN++L + V++ +FR DL Sbjct: 297 LDEIGEMPAGLQAKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDL 356 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNVFP+ +P LR+R EDIP L HF KMAR R + + +L L+ ++WPGN+ Sbjct: 357 YYRLNVFPIWVPSLRERREDIPSLINHFLDKMAREYGRRL-VLSNSSLDYLVEYEWPGNI 415 Query: 565 RELENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 RE+EN++E+ +++ G + +L +++Q ++ P ++ A S+ + Sbjct: 416 REMENLMEKLSIMSEGQIVALKDLPSDMQQEKVCPGKVQEQARDHSLLDM---------- 465 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E++ I+ L+ + I + AA LG+ + + R+++ + Sbjct: 466 -EKKEILSALQRNSWIQS---RAARELGLTQRQMGYRIKKFNL 504 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 156/340 (45%), Positives = 213/340 (62%), Gaps = 13/340 (3%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIY-QSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 +L +EN +L E+ GD+I +S AM+++ + +D A D +VLI GE+GTGKE++ Sbjct: 124 NLSRENMRLREEN-KVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKELV 182 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 AR IH SPRRD V INCAAIP ++ESELFG+ KGAFTGA G FE A+GGT+F Sbjct: 183 ARQIHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGGTIF 242 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDE+ + L LQ KLLRVLQ+ RLG + VNVRV+AATNRD+ ++ FR DL Sbjct: 243 LDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFREDL 302 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRL V + +P LRDR +D+PLLA +F K A+ N+ +D + T+ L LM DWPGNV Sbjct: 303 YYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPGNV 362 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 RELENVI+RA++L +G ++ + L P ++ + L + P T E E E Sbjct: 363 RELENVIQRALILCQGKVID------EGVLPPEISRGTELSVRAIDHMQPQTLE--EVEV 414 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 I + LRETNG A A LG+ ++TL +++R I Sbjct: 415 YFIRKTLRETNGDRA---LCAEILGIDKSTLWRKIKRYSI 451 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/344 (42%), Positives = 216/344 (62%), Gaps = 13/344 (3%) Query: 326 SLQQENHQLSEQLLSNL---GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 S +E QL +Q++ N +I + A++ ++ + VAK+D+T+LI GE+G GKE Sbjct: 125 STSEELQQLKQQMIQNNRDDPFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKE 184 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGG 441 + A+AIH+ S R K + INC AIP +L ESELFG++ GA+TGA + G+ E+ADGG Sbjct: 185 LFAQAIHEASLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGG 244 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDE+G+LPL++Q KLLR LQE+EI R+GG ++VR+IAATNR L MV + FR Sbjct: 245 TLFLDEVGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFR 304 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 SDLFYRLNVF +PPLR+R +DI LA HF ++ + N+ + EA ++L ++ WP Sbjct: 305 SDLFYRLNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEATKRLHAYSWP 364 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GN+REL N IER ++L G+ + +S +L L + + ++Q T E + Sbjct: 365 GNIRELRNFIERLIVLHEGSE------IYESDILKLLPQAKSFSEPVSQTTLSLTDERES 418 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 E+ RI+Q L++T G A +LGM R L ++++ I+ Sbjct: 419 LEKTRILQTLQQTYG---NKSITAKKLGMSRANLYKKIKKYRIT 459 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 152/336 (45%), Positives = 214/336 (63%), Gaps = 16/336 (4%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 ++ S+AM + + + A +D+ VL+ GE+GTGKE++ARA++Q S R +KP + INC A Sbjct: 146 LVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELVARAVYQHSLRGEKPFLIINCVA 205 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP +LLESELFG++KGAFTGA N G+ E A+GGT+FLDEIGD+PL +Q KLLR+LQE+ Sbjct: 206 IPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGTVFLDEIGDMPLGIQAKLLRLLQEK 265 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 +IERLGG + IPV+VR+IAATN DL V D +FR DL+YRL V L LPPLR+R EDIP Sbjct: 266 QIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFREDLYYRLKVVTLWLPPLRERSEDIP 325 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN----- 581 LA++F + +R M+ I EAL L + WPGNVREL N + +A++ +RG Sbjct: 326 PLARYFLARFSREMDMPNPGITPEALAYLEAQPWPGNVRELGNSVHKALVFSRGGPLGEP 385 Query: 582 ----SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ------VL 631 +L VR P + A +M +L+ T E+D + + V+ Sbjct: 386 DLKQALEASRGVRPGSEGPACDLSLAADQTMQELIRRTLSESDGDNVFDSLMDHVGRLVV 445 Query: 632 RETNGIVAGPRGAATR-LGMKRTTLLSRMQRLGISV 666 RE + G R A R LG+ R TLL+++++ G+ + Sbjct: 446 REALHLTGGNRTRAARLLGLSRPTLLAKIEKYGLRI 481 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 138/261 (52%), Positives = 183/261 (70%), Gaps = 1/261 (0%) Query: 318 RSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 RSM + +E+++ EN +L +L + +II ++M + ++ V+ +D+TVL+ GE+ Sbjct: 162 RSMAE-REAVELENQRLRAELRGRFRVANIIGNHKSMAQVYDRIARVSSADTTVLLRGES 220 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE++ARAIH SPR + P V +NCAA+P LESELFGH++GAFTGAI +GRFE+ Sbjct: 221 GTGKELVARAIHFASPRAEAPFVAVNCAALPEGTLESELFGHERGAFTGAIGARKGRFEL 280 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 ADGGTLFLDEIG+L Q KLLRVLQER ER+GG+ T +VRV+ AT+ DL + Sbjct: 281 ADGGTLFLDEIGELRPHTQVKLLRVLQERRFERVGGATTRRCDVRVLTATHADLEAAMAR 340 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FR DL+YRLNVF + LPPLR+R EDI LA F ++ + I +A R L++ Sbjct: 341 GEFREDLYYRLNVFEIMLPPLRERGEDILALADFFVERYGPRQRPPVTRIGHDAARHLLA 400 Query: 558 WDWPGNVRELENVIERAVLLT 578 WDWPGNVRELEN IERAVLLT Sbjct: 401 WDWPGNVRELENCIERAVLLT 421 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 149/329 (45%), Positives = 211/329 (64%), Gaps = 10/329 (3%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II +SQAM+DL + + A +D+TVLI GE+GTGKE++ARA++Q S R DKP + INC A Sbjct: 146 IIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELVARAVYQHSLRADKPFLVINCVA 205 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP +LLESELFG++KGAFTGA G+ E A+ GT+FLDEIGD+PL +Q K+LR+LQE+ Sbjct: 206 IPETLLESELFGYEKGAFTGATGRKVGKIEQANRGTVFLDEIGDMPLSIQAKILRLLQEQ 265 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 +ERLGG + IPV+VR+IAATNRDL V QFR DL+YRL V + +PPLR+RP DIP Sbjct: 266 NVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFREDLYYRLKVVTMAMPPLRERPGDIP 325 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LL ++F + +R M + + EA+ L + WPGNVREL N +++A++ G L Sbjct: 326 LLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWPGNVRELGNTVKKALIFNLGAPLGPD 385 Query: 587 LNVRQSRLLPTLNEDSALR---SSMAQLLHPTTPENDEEERQRIVQ-----VLRETNGIV 638 V+++ P A S+A+ + E + ++ V+RE Sbjct: 386 -EVQKASGEPLRGGGPAEADPGDSLARYVRRELASGRESLFEDLMDRFGLLVIREALEAT 444 Query: 639 AGPRGAATR-LGMKRTTLLSRMQRLGISV 666 G R A R LG+ R TLL+++++ G+ + Sbjct: 445 GGNRSQAARLLGLSRPTLLAKIEKYGLRI 473 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 133/242 (54%), Positives = 177/242 (73%), Gaps = 1/242 (0%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II +S M+ + + + VA +++TVLI GE+G+GKE++ARAI+Q S R +KP + INCAA Sbjct: 162 IIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVARAIYQYSLRANKPFIAINCAA 221 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP +LLESELFGH++G+FTGA+ G+FE DGGT+FLDEIG++P+ Q K+LRVLQE Sbjct: 222 IPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLDEIGEMPISTQAKILRVLQEG 281 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E RLG + I +VR+IAATN+DL V R+FR+DLFYRLNV + LPPLR+R EDIP Sbjct: 282 EFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFYRLNVVKISLPPLRERVEDIP 341 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA-VLLTRGNSLNL 585 L HF K R++ A I ++A+R L+++ WPGN+RELENVI+RA VL T N Sbjct: 342 DLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIRELENVIQRAMVLATSATIQNC 401 Query: 586 HL 587 HL Sbjct: 402 HL 403 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 152/346 (43%), Positives = 227/346 (65%), Gaps = 20/346 (5%) Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L+QE ++S Q + +I +S+A++ L+ ++ +++TVL+ GE+GTGKE++AR Sbjct: 251 LEQEIRKISGQ---DCAFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLAR 307 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFL 445 AIHQ SPR P + +NC AIP +L ESELFG++ GAFTGA + G FE+A+GGTLFL Sbjct: 308 AIHQNSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFL 367 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DE+G++P+E+Q KLLRVLQE R+GGS+++ VNVRV+AAT+R+L M+ RQFR DL+ Sbjct: 368 DEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLY 427 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNV LE+PPLRDR EDIP L F Q+ + ++ I I + + + WPGNVR Sbjct: 428 YRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVR 487 Query: 566 ELENVIERAVLLTRGNSLN---LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 EL+N +ER V+LT G+ ++ L N+R++ + + S +L++ E Sbjct: 488 ELKNAVERLVVLTDGDIIDEAALPENLRRNTYISLVTSP----VSQGKLMNVAV----EA 539 Query: 623 ERQRIVQVLRETNGIVAGPRGAATR-LGMKRTTLLSRMQRLGISVR 667 E+Q I++ L++ V G R A R LG+ R+TL ++++LGI + Sbjct: 540 EKQLILKTLQQ----VRGNRSEAARVLGIPRSTLYYKLRQLGIPAK 581 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 157/342 (45%), Positives = 213/342 (62%), Gaps = 23/342 (6%) Query: 341 NLGI-GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 +LGI G++I S AM D+ + V +D+ VLI GE+GTGKE+ A A+H S RRD+P Sbjct: 133 DLGISGEMIGDSPAMRDVRALLARVGPTDARVLITGESGTGKELAAAALHVSSARRDRPF 192 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 V++NCAAIP L+ESE+FGH++GAFTGA GRFE+A GTLFLDE+GDL E Q KL Sbjct: 193 VRVNCAAIPRDLVESEMFGHERGAFTGATERRIGRFELAHTGTLFLDEVGDLGAEAQAKL 252 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LR ++ REIER+GG + I V+VR++AATN+DL + V D FR DLF+RLNV P+ LPPLR Sbjct: 253 LRAIEAREIERVGGGKPIKVDVRILAATNKDLTRAVADGSFREDLFFRLNVIPIHLPPLR 312 Query: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 DRP D+P L +HF+ + R + AL L ++ WPGN+REL NV+ER +L Sbjct: 313 DRPGDLPALVRHFSARHRTRTGRPLVQWHESALGALSAYRWPGNIRELANVVERLAILHA 372 Query: 580 GNSLNLHLNVRQ-----------SRLLPTLNE-----DSALRSSMAQLLHPTTPENDEEE 623 G+ + VRQ + +P+ E D+ +S A + P + D E Sbjct: 373 GSEVT-RTEVRQVLPETAALPGATSAVPSGTEAGTEVDTPDPASAAHM--PLSDALDAYE 429 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 R+ I L +++G VA AA RL R L RM+RLG++ Sbjct: 430 RRLISAALAQSDGNVA---EAARRLQTDRPNLYRRMRRLGLA 468 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 149/316 (47%), Positives = 204/316 (64%), Gaps = 17/316 (5%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II Q M+ L+ VD VA S + VLI GE+GTGKE+ AR IH S R+DK V +N AA Sbjct: 135 IITQDDRMKRCLEVVDSVADSKAAVLISGESGTGKELFARQIHYSSSRKDKNFVAVNVAA 194 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +P +LLESELFGH+KGAFTGAIN G+FE+A GGTL LDEI ++ + LQ KLLRVLQE Sbjct: 195 LPETLLESELFGHEKGAFTGAINRKIGKFELASGGTLLLDEITEMDIGLQAKLLRVLQES 254 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E++R+GG+ + V+VRV+A TNRD+ Q + D +FRSDL+YRL V PL+LPPLR+R D+ Sbjct: 255 EVDRVGGTSPVNVDVRVVATTNRDVEQAIADGKFRSDLYYRLAVIPLKLPPLRERSSDVI 314 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL--- 583 LLA+HF +K + + + A L++ DWPGNVRELEN IERAVLL +G+ + Sbjct: 315 LLAEHFIRKYNARDGKNVKGLTKNAQNTLLNLDWPGNVRELENTIERAVLLCKGDQIDHN 374 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 +L + + LP + ++ +++ ++ E Q I Q L +T G Sbjct: 375 DLFMEPPPPKALPRQDSIPSVSTTLREM-----------EEQMIYQALDQTEG---NRTH 420 Query: 644 AATRLGMKRTTLLSRM 659 AA LG+ TL +++ Sbjct: 421 AAQILGISVRTLRNKL 436 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 140/290 (48%), Positives = 199/290 (68%), Gaps = 15/290 (5%) Query: 294 EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL------SNLGIGDI 347 E C+ LQ +A IA N A+ LQE + ++ H +++ L+ + + +I Sbjct: 207 EGQCRFLQVVAGMIA----NQAAY-----LQEEMARQKHMMTQGLIGGDVAENTVQAANI 257 Query: 348 IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI 407 + S++M +L QV V S +T L+ GE+GTGKE++A AIHQ SPRRD PL+K+NCAA+ Sbjct: 258 VAASKSMRLVLNQVAQVGPSRATALLRGESGTGKELLAEAIHQASPRRDMPLIKLNCAAL 317 Query: 408 PASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQERE 467 P+ L+ESELFG+ KGAFTGA+ +G FE+A GTLFLDEIG+L Q K+LR +QE+E Sbjct: 318 PSDLVESELFGYQKGAFTGAVQNKKGLFELAHKGTLFLDEIGELSASAQAKVLRAIQEQE 377 Query: 468 IERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPL 527 I+RLG +TI V+VR+I AT++ L ++VE FR DL+YR+NVFP+ +PPLR+R EDI Sbjct: 378 IQRLGSEQTISVDVRLICATHQHLEELVESGSFREDLYYRINVFPVFIPPLRERREDILP 437 Query: 528 LAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLL 577 +A+HF ++ A ++I I T A+ L + WPGN+REL+N IERAVL+ Sbjct: 438 VAEHFLKEYAEEYQKSIKRISTPAIDLLTQYHWPGNIRELKNCIERAVLV 487 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 141/331 (42%), Positives = 215/331 (64%), Gaps = 34/331 (10%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 +I Q + +++ ++ S ST+LI GE+GTGKEV A++IH S R D P + +NC A Sbjct: 338 VIGQDENFIKVVEYAKKISDSKSTILIMGESGTGKEVFAQSIHNYSSRVDGPFIALNCGA 397 Query: 407 IPASLLESELFGHDKGAFTGAINT-HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 IP L+ESELFG+++GAFTGA +RG+FE+ADGGT+ LDEIG++PL++Q KLLRV+QE Sbjct: 398 IPKQLIESELFGYEEGAFTGAKKGGNRGKFELADGGTIMLDEIGEMPLDMQTKLLRVVQE 457 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 I ++G S++IPV+VR+IAATNRDL + VE +FR DL+YRLNV PL LPPLR+R DI Sbjct: 458 GVITKIGSSKSIPVDVRIIAATNRDLKKEVELGRFRKDLYYRLNVLPLFLPPLRERKGDI 517 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV--------LL 577 PL+ ++ + +++ + + +I E L+++ S+DWPGN+RELENV+E + Sbjct: 518 PLIIRYLIKNISKRLEKKEPSISEEWLKEINSYDWPGNIRELENVVELIINTESIPSGYF 577 Query: 578 TRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGI 637 GN N +L ++EDS L+ A E++ +V+VL++ G Sbjct: 578 QNGNCYN--------EVLINISEDS-LKLDFA-------------EKEHLVKVLKKFKGN 615 Query: 638 VAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + +A LG++R TL S++++ I +++ Sbjct: 616 IT---RSAEALGIRRNTLYSKIKKYNIEIKQ 643 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 162/340 (47%), Positives = 210/340 (61%), Gaps = 17/340 (5%) Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 E + +E+ G+ I+ +S AM ++L +V VA +D+TVL+ GE+GTGKE++ARA+H Sbjct: 152 EVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVARALH 211 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 S R DKP V +NCAAI +LLESELFGH +GAFTGA RG FE A+GGTLF+DEIG Sbjct: 212 VTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFIDEIG 271 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 + Q KLLR LQE EI R+G S + VNVR+IAATN+DL + + +R+FR DLFYRLN Sbjct: 272 ETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLN 331 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 V PL +PPLR+R ED+PLLA HF Q+ + P EA+ L++ DWPGNVRELEN Sbjct: 332 VVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSERVLTP-EAVASLVAHDWPGNVRELEN 390 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 +IE+A L G R+ R E A + A + E D E R Sbjct: 391 IIEQAAALCTG---------REIRAADVQIEARAAPAGGAGVTLADAVE-DTERRAITAA 440 Query: 630 VLRETNGIVAGPRGAATR-LGMKRTTLLSRMQRLGISVRE 668 + R N + G R LG+ TTL +M+RLGI RE Sbjct: 441 LARCGNDL-----GRVARDLGISGTTLWRKMKRLGIEARE 475 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 152/323 (47%), Positives = 203/323 (62%), Gaps = 12/323 (3%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II +S+ M +L + ++ VA+S +TVLI GE+GTGKE+ ARAIHQLS R K V +NCAA Sbjct: 142 IIGRSRQMLNLFEMIEKVAESSATVLIQGESGTGKELAARAIHQLSSRSSKNFVPVNCAA 201 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP LLESELFGH KG+FTGA GRFE+AD GTLFLDEIGD+ LQ KLLRVLQ + Sbjct: 202 IPDDLLESELFGHVKGSFTGAYANRIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQAK 261 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E E +G +R+ V+VR+IAA+N++L + V R FR DL+YRL+V P+ +PPLRDR EDIP Sbjct: 262 EFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDFREDLYYRLSVIPITIPPLRDRREDIP 321 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LL HF + R R + EAL L ++DWPGNVRELEN++ER + + + + Sbjct: 322 LLINHFQGQFNRDRRRLVKGFTREALEMLCNYDWPGNVRELENLVERMITMKESGFITVD 381 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN--------DEEERQRIVQVLRETNGIV 638 ++ + L P L S + + P D E I+Q L T G Sbjct: 382 -DLPEKYLAPRTVVAPPLSVSGSVPVGKELPPEGICLNSAVDAFENGLIMQALHRTGG-- 438 Query: 639 AGPRGAATRLGMKRTTLLSRMQR 661 + AA L +KRTTL+ ++++ Sbjct: 439 -NKKEAAALLNLKRTTLIEKLKK 460 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 167/400 (41%), Positives = 243/400 (60%), Gaps = 31/400 (7%) Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEE------NCQLLQHIADRIAIAVGNADAWRS 319 S L +P+ + G + ++ +++EE + ++L +A I + ++++ Sbjct: 117 SFLCVPIRIEDEILGVI----SADRIYAEEQGDVDDDLRVLSVVASLIGQFIKLWESYKI 172 Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 M D EN L QL +++ QS + + +L+ V VA +D+TVL+ GE+GT Sbjct: 173 MED-------ENIILRAQLKDRYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGT 225 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE+IA+ IH S R P V INCAAIP +LLE+ELFG +KGAFTGA+ G+FE A+ Sbjct: 226 GKELIAKTIHFQSKRAKGPFVAINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQAN 284 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGT+FLDEI +LPL LQPKLLRVLQER +E LG S+TI V+VR+I+ATN+DL + + Sbjct: 285 GGTIFLDEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGN 344 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR DLF+RLNV P+ +PPLR+R EDIPLL +++ + +++ +I EAL+ L+S+D Sbjct: 345 FREDLFWRLNVIPIYIPPLRERKEDIPLLVEYYLKSFCNIYRKSV-SIDEEALKVLVSYD 403 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR-SSMAQLLHPTTPE 618 WPGNVREL N IER V++T + + ++ L T+ L+ S+ L PT E Sbjct: 404 WPGNVRELANTIERLVVMTESSKIKVY------DLPDTVRGVFKLKPYSLGDLKLPT--E 455 Query: 619 NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 +E ER RI+ L + N + R A LG+ L R Sbjct: 456 VEELERIRIMDTLPKFNFNI---RKTAQALGLTERQLNYR 492 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 145/321 (45%), Positives = 212/321 (66%), Gaps = 12/321 (3%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +++ S M +L V VA ++STV+I GE+G GKE+IA AIH+ S R KP V++NC+ Sbjct: 204 NMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAIHKASSRIKKPFVRVNCS 263 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 A+P +L+ESELFG++KGAFTGA H GRFE+ADGGT+FLDEI D+P +Q KLLR+LQ+ Sbjct: 264 ALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEIADIPFSVQVKLLRILQQ 323 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 R+ ER+GG+ TI +VR++ ATNR+L +M+++ FR DL+YR++VFP+ +P LR+R DI Sbjct: 324 RQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRIHVFPIYVPALRERRADI 383 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 +L HF QK+ + + I + AL LM + WPGNVRELENVIERA++LT + ++ Sbjct: 384 TILTDHFIQKINKQNQTNVKRITSGALDMLMMYSWPGNVRELENVIERAMILTTDDVIHS 443 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 + N+ S L ++ D+ + +L ERQ I+ L G VA +A Sbjct: 444 Y-NLPPS-LQTGVSSDTVKVGRLDLVLGKV-------ERQMIMDTLIANRGNVA---KSA 491 Query: 646 TRLGMKRTTLLSRMQRLGISV 666 +LG+ + R++R I+V Sbjct: 492 FQLGISERVMGLRIKRYNINV 512 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/340 (45%), Positives = 209/340 (61%), Gaps = 16/340 (4%) Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 ++ EN +L E LL + G+ I+ S A++DL V VA D VLI GE+GTGK ++A Sbjct: 123 GMRMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVA 182 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 A+H LSPR+++P V NC L+ SELFG++KGAFTGA + G E A GGT+FL Sbjct: 183 LALHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFL 242 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DE+G++PL +Q +LL VLQER I R+GG++ + +++RVIAATNRDL VE FR DLF Sbjct: 243 DEVGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLF 302 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +RLNV LP L DR EDIPLL +HF K +++ I +AL L + +PGNVR Sbjct: 303 FRLNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVR 362 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRS-SMAQLLHPTTPENDEEER 624 ELEN+IERAV LT G ++ L L ED +R+ A L P E ER Sbjct: 363 ELENIIERAVALTDGQTIGLL----------DLPED--IRNLEFATLEGDGLPTLAEVER 410 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + ++++L +T R AA LG+ RTTL +++ G+ Sbjct: 411 RYVIRILEKTG---YNKRLAAQVLGVPRTTLWRKLKEYGV 447 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 146/333 (43%), Positives = 217/333 (65%), Gaps = 18/333 (5%) Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 ++ LG G+I+ +S+ + LL Q VA DSTVLI GETG GKE++A+ IHQ S R + Sbjct: 255 EMEEKLGEGEIVAKSKVKKRLLAQAARVAAFDSTVLITGETGVGKEIVAKYIHQNSNRSE 314 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAI-NTHRGRFEIADGGTLFLDEIGDLPLEL 455 +P +KINC AIP +LLESELFGH+ G+FTGA N G+FEIA+GGTL LDEIG+L +L Sbjct: 315 QPFIKINCGAIPENLLESELFGHEPGSFTGASKNGKPGKFEIANGGTLLLDEIGELSKDL 374 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q KLLR LQ++EI R+GG + ++V++IA TNRDL +MV +FR DL+YRL+V PL + Sbjct: 375 QVKLLRALQDQEITRIGGVKPRQLDVKIIACTNRDLEEMVSQGEFREDLYYRLSVVPLYI 434 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLR+RP+DIP L +H+ +K + + AL +L+S++WPGNVRELEN+IER V Sbjct: 435 PPLRERPDDIPFLIRHYIRKYNEKYG-VNKGLSSSALEELVSYNWPGNVRELENMIERLV 493 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP-TTPENDEEERQRIVQVLRET 634 ++ N L+ T + ++ S ++L + P+ + +R++Q E Sbjct: 494 IMVPEN------------LIETSDLPQQIKESNVKILENLSLPDAVSKLEKRMLQKAMEQ 541 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + R AA LG+ ++T++ ++ + G++ + Sbjct: 542 SN---NTREAAQILGVAQSTVVRKLDKYGLNYK 571 >UniRef50_C6PZ60 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ60_9CLOT Length = 531 Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 126/222 (56%), Positives = 171/222 (77%), Gaps = 1/222 (0%) Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 AK +S +LI GE+GTGKEV ARAIH++S R+D+P + INCAAIP +LLESELFG++ GAF Sbjct: 292 AKYESNILILGESGTGKEVFARAIHKMSKRKDEPFIAINCAAIPENLLESELFGYESGAF 351 Query: 425 TGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRV 483 TGA + G+FE+A+GGT+FLDE+GDL L LQPKLLRV+++ ++ER+GG ++I ++VR+ Sbjct: 352 TGANKGGKPGKFELANGGTIFLDEVGDLSLHLQPKLLRVIEQGQLERVGGVKSIKLDVRI 411 Query: 484 IAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA 543 I+ATN+DL MV+ +FR D FYRL V P+ +PPLR R EDI LLA+HF K + +N+ Sbjct: 412 ISATNKDLETMVKKGEFREDFFYRLCVIPIMIPPLRKRLEDIILLAEHFLDKYNKKLNKN 471 Query: 544 IDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 I I E +QL+ +DWPGNVRELENV+E +V + + L L Sbjct: 472 IVGISEEVKKQLLLYDWPGNVRELENVVEYSVNMENKDVLTL 513 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 158/361 (43%), Positives = 217/361 (60%), Gaps = 26/361 (7%) Query: 249 LWQRDPLLLLLASNGCES---------ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQL 299 ++QR+ L +L AS+G E +L+ HT G LL + E + Sbjct: 34 IFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMDLLKAAKTVAPETEVVLM 93 Query: 300 LQHIADRIAIAVGNADAWRSMTD---------------LQESLQQENHQLSEQLLSNLGI 344 + A+ A+ +T ++SL EN L QL Sbjct: 94 TAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSLVVENRVLRAQLAEQRSR 153 Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 +I S A + V A SD+TVL+ GE+GTGKE++AR++H+ S R DKP + INC Sbjct: 154 A-VIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLHEGSARADKPFIAINC 212 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AAIP S+LE ELFG++KGAFTGA ++ GRFE A GGTLFLDE+G++P +Q KLLRVLQ Sbjct: 213 AAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVGEMPRHVQVKLLRVLQ 272 Query: 465 EREIERLGGS-RTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 E EIERLGGS RT P+++R+IAATN +L + V++ +FR DL+YRLNV + +PPLR+R + Sbjct: 273 EGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRLNVISIAVPPLRERRD 332 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 DIPLL +HF Q A + + +AL +L + WPGNVRELEN +ERAV+L+RG L Sbjct: 333 DIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELENAVERAVVLSRGEVL 392 Query: 584 N 584 + Sbjct: 393 D 393 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 227/370 (61%), Gaps = 27/370 (7%) Query: 303 IADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 I DR+ VG + M++++E + + L++ L++ DIIY S+ M +++ Sbjct: 170 IKDRLGNIVGVVAVLKPMSEVRELV----YALTKPSLNSFN--DIIYTSEKMRFVVEMAK 223 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 VA++D+TVLI GE+GTGKE+ ARAIH SPRR KP V +NCAA+P SLLESELFG+ +G Sbjct: 224 KVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVEG 283 Query: 423 AFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNV 481 AFTGA + G E A GTLFLDEI +LP LQ KLLRVLQE ++ R+GG IPV++ Sbjct: 284 AFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVDI 343 Query: 482 RVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMN 541 R+IAATNR+L MV + +FR DL++RLNVFPL++PPLR+R EDI +L HF A+ Sbjct: 344 RIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRRG 403 Query: 542 RAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNED 601 I AL +L ++ WPGNVREL+NVIERA+ L + +D Sbjct: 404 IQYFEITENALNKLKAYSWPGNVRELQNVIERALTLADDGVIEA--------------KD 449 Query: 602 SALRSSMAQLLHPTTPEN--DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 L + T E ++ E++ I + L++ I R AA LG+ TTL +++ Sbjct: 450 IILDNPQNTYFVARTLEEAVNQVEKELIERALKQYPSI----RQAARSLGVTHTTLRNKI 505 Query: 660 QRLGISVREV 669 ++L ++ + V Sbjct: 506 KKLKLTNKVV 515 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 152/343 (44%), Positives = 222/343 (64%), Gaps = 14/343 (4%) Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L ++L G + +S M + +++ VA +DSTVLI GE+GTGKE++ARAIH+ S Sbjct: 132 LLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARAIHKHSQ 191 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 RRD P V ++C ++ +LLESELFGH KG+FTGA++T G F++A+GGTLFLDE+ +L L Sbjct: 192 RRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDEVSNLSL 251 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 Q KLLRVLQERE+ +GG++ P+N+R++AATNR L +MV + FR DLF+RLN+ P+ Sbjct: 252 TTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFRLNIIPM 311 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 +LPPLR+R DIPLL H + +A + + I + A++ L S+ +PGNVRELEN+IER Sbjct: 312 DLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVRELENIIER 371 Query: 574 AVLLTRGNSL---NLHLNVRQSRLLPTLNED-SALRSSMAQLL----HPTTPENDEEERQ 625 AV+L + + +L LN S PT+ D +A+ S+ +L H ++ E+ Sbjct: 372 AVVLAEDSLITPDDLELNHAAS---PTVLLDYTAVPLSVEELKETKRHLREQAVEDIEKA 428 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 +V L+ G + AA GM R + M++LGIS R+ Sbjct: 429 FVVNALQRNRGNIT---RAAEETGMLRPNFQAMMKKLGISARD 468 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 145/284 (51%), Positives = 195/284 (68%), Gaps = 7/284 (2%) Query: 318 RSMTDLQESLQQENHQLSEQLLSNLG-IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 R++ + + + +E ++ ++L I D++ S M +++ QV VA STVLI GE Sbjct: 175 RTVAEERRFMMRETFRMQKELRPVAAPINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGE 234 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 +GTGKE+IARAIH +SPR+D P +++NCAA+P SLLESELFGH+KGAFTGA H+GRFE Sbjct: 235 SGTGKELIARAIHNMSPRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFE 294 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 +A GGTLFLDEIGD+ Q KLLRVLQE+E ER+GGS+TI +VR+I ATN +L + V Sbjct: 295 LASGGTLFLDEIGDISPNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVG 354 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 +FR+DL++R+NV + LPPLR+R +DI LA+HF K A+ A+ + EAL L Sbjct: 355 HGKFRADLYFRINVVTIHLPPLRERRQDIGPLARHFVAKFAKDNGMAL-VMEDEALEVLN 413 Query: 557 SWDWPGNVRELENVIERAVL-----LTRGNSLNLHLNVRQSRLL 595 WPGNVRELEN IERA + R SL+ LN+ S +L Sbjct: 414 RCTWPGNVRELENCIERAATQSRDGIIRTESLSCSLNLCNSSVL 457 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 147/346 (42%), Positives = 216/346 (62%), Gaps = 16/346 (4%) Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 + ++++ Q NH Q + + D+I Q + + + + A +DS VLI GE+GT Sbjct: 311 VKEIEKVRQFVNHLSGNQ--AKITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGT 368 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT-HRGRFEIA 438 GKE++A+AIH S RR+KP + INC IP LL SELFG+ GAFTGA G+FE+A Sbjct: 369 GKEMVAQAIHNESKRRNKPFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELA 428 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 +GGTLFLDEIG++ LE+Q LLRV+QE+E+ R+GG + IPV+VR+IAATN+DL + V+ Sbjct: 429 NGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKG 488 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 FR DLF+RLNV P+ LPPLR+R EDIPLL +HF +++A ++ I ++ L LM + Sbjct: 489 SFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALMQY 548 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE 618 DWPGN+REL+N+IER L+ + L E+ S +Q+ Sbjct: 549 DWPGNIRELQNMIERV----------LNQCTKPVLTAADLPEEIFQPSCSSQVRENVDIS 598 Query: 619 NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +E ++Q I++ L++ NG ++ AA LG+ R+T +M + I Sbjct: 599 RNEIKKQSIIEALKQCNGNIS---KAARYLGISRSTFYRQMDKWNI 641 >UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4T0_9DELT Length = 461 Score = 274 bits (701), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 147/318 (46%), Positives = 202/318 (63%), Gaps = 18/318 (5%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 I+ AM D+ +D VA SD+ VL+ GE+GTGKE++A AIHQ SPRR +PLV INC A Sbjct: 148 IVGDCPAMRDVYAMIDKVAASDAPVLVHGESGTGKELVAMAIHQASPRRQQPLVSINCGA 207 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP +LLESE FGH++GAFTGA NT +G+ E A+ GTLFLDEIG+LP+ LQ KLLR LQ+ Sbjct: 208 IPENLLESEFFGHERGAFTGATNTVKGKVEYAENGTLFLDEIGELPVNLQVKLLRFLQDM 267 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 +R+GG +T+ VNVRV+AATN ++ + + QFR DL+YR+ V + LPPLRDR ED+ Sbjct: 268 RFQRVGGRKTLEVNVRVLAATNVNIQEAMRLGQFREDLYYRIGVVGIHLPPLRDRGEDVV 327 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL--- 583 LLA HF + + + + I EA+ + ++ WPGNVRELEN + RA++L G+ + Sbjct: 328 LLANHFLEIHGKQLPKKIQGFSPEAMEAIRNYPWPGNVRELENKVRRAIILVEGSRITPQ 387 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 +L L S P E + LR + QL ERQ ++Q LR G + Sbjct: 388 SLGLAGEASSPGPARAE-TTLREARTQL-----------ERQMMLQALRRFEGNIV---K 432 Query: 644 AATRLGMKRTTLLSRMQR 661 A+ LG+ R T +++ Sbjct: 433 ASEALGVSRPTFYDLLRK 450 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 166/402 (41%), Positives = 239/402 (59%), Gaps = 37/402 (9%) Query: 295 ENCQLLQHIADRIAIAVG-NADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 ++ QLL+ +A IA A+ + +A S +QE + + + + + IG +S + Sbjct: 153 DDLQLLEVVASPIARALLLDREADPSRKSVQEEISRRRNAAAPIYQVDWAIG----RSAS 208 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 M+ + QV VA + +TVL+ GE+GTGKE+IARAI++LSPR+D+P V +NCAA+ +LLE Sbjct: 209 MQHVFAQVHQVAPARTTVLLRGESGTGKELIARAIYRLSPRKDQPFVSVNCAALTETLLE 268 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 SELFGH+KGAFTGA +GRFE+A GGTLFLDEIGD+ Q KLLRVLQERE ER+GG Sbjct: 269 SELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIGDISPSFQAKLLRVLQEREFERVGG 328 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 + + V+VR+I ATNR+L QMV + +FR+DL+YR+NV + LPPLR+R EDIP +A++F Sbjct: 329 TTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRINVVSIVLPPLRERREDIPEMAQYFL 388 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN--------- 584 + R RA+ EALR L S WPGNVRELEN IER + +++ Sbjct: 389 NRFNRENGRALH-FNEEALRVLSSCYWPGNVRELENCIERTATMAHHDTIGRSSFLCEID 447 Query: 585 ------LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND-------------EEERQ 625 LH R+ + P D + +++ PE D E+ER+ Sbjct: 448 QCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKFGAPERDAGGLGMHSGEHIPEDERE 507 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 R++ + + A AA LG+ + +++ GI +R Sbjct: 508 RLLWAMERCGWVQA---KAARLLGITARQIGYALRKHGIKLR 546 >UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QL4_SOLUE Length = 457 Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 155/321 (48%), Positives = 202/321 (62%), Gaps = 12/321 (3%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 +I S+ M L + +VA STVLI GETGTGKE+ ARA+H R P+V +NC A Sbjct: 137 LIGGSRGMRQLHHIIHLVAGRRSTVLITGETGTGKELAARALHLGGKRSSGPMVSVNCHA 196 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +P SLLESELFGH +GAFTGA GRFE A GGTLFLDEIG+LP++LQ KLLRVLQER Sbjct: 197 LPESLLESELFGHVRGAFTGAFQNRIGRFEQAQGGTLFLDEIGELPIDLQAKLLRVLQER 256 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E++RLG S TI V++RV+AATN DL + +E+ +FR DL+YRLNV PLE+PPLR R ED+P Sbjct: 257 EVQRLGSSETIKVDIRVVAATNCDLPRRIEEGKFREDLYYRLNVVPLEMPPLRRRLEDVP 316 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 +LA HF +K R + + EAL L + WPGNVR+LENV+E A+ L+ Sbjct: 317 MLAAHFVEKACRAESIPPKMLTREALELLCGYSWPGNVRQLENVVEMAIALSEDRRTLTP 376 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE-----ERQRIVQVLRETNGIVAGP 641 ++ +LP A + + P + E ER + Q LR T G Sbjct: 377 MDF----VLPATTRKPAPAAPGPLIALPADGLDYERTLAVIERSILEQALRRTGG---NK 429 Query: 642 RGAATRLGMKRTTLLSRMQRL 662 + AA L +KRTTL ++++ L Sbjct: 430 KAAADMLHLKRTTLSAKVRIL 450 >UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=B9M6T3_GEOSF Length = 488 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 150/331 (45%), Positives = 210/331 (63%), Gaps = 21/331 (6%) Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 +L N + + +AM D+ + VA +D TVLI GE+GTGKE+ A+AIH+ SPR+D Sbjct: 175 KLKGNDDLDQFVGTGKAMLDVFANIRKVAPTDLTVLILGESGTGKELTAQAIHERSPRKD 234 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 KP V INCAAIP +LLE+ELFGH+KGAFTGA T +G+FE AD GT+FLDEIGD+P LQ Sbjct: 235 KPFVAINCAAIPDNLLEAELFGHEKGAFTGAHTTKKGKFEYADNGTIFLDEIGDMPSNLQ 294 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 KLLR LQ++ +ER+G VNVRVIAATNRDL + + +FRSDL+YRL+ F + LP Sbjct: 295 AKLLRFLQDKIVERVGTVGGKKVNVRVIAATNRDLSVAIAEGKFRSDLYYRLDEFAINLP 354 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 P+R+R ED +LAK+F K +R A EA+ + ++DWPGNVRE+ N + R+++ Sbjct: 355 PVRERGEDTLILAKYFLNKFSREGGLA-KTFTKEAIDVINNYDWPGNVREIINKVRRSIV 413 Query: 577 LTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 + G + +L L+V + ED A S ++ + E+++I +V + Sbjct: 414 MATGRYVTPADLMLDVAKV-------EDGAGNSDLSSAVAVL-------EKEKIKEVFKS 459 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 N ++ AA LG+ R TL RM+ GI Sbjct: 460 CNYNIS---TAAKLLGVSRPTLYRRMKIYGI 487 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 140/321 (43%), Positives = 207/321 (64%), Gaps = 15/321 (4%) Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 G +I S+ M+++ + + ++++++ TVLI GETGTGKE+IARAIH P +D P + INC Sbjct: 140 GPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIARAIHDYGPHKDHPFIPINC 199 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 +AI +LLESELFGH+KGAFTGA T +G+FE+A GT+FLDE+G++P+ELQ KLLR LQ Sbjct: 200 SAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFLDEMGEIPIELQAKLLRFLQ 259 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 ++ +R+GG + + RVI ATN+DL QMV FR DL+YRL+ + +PPLR R ED Sbjct: 260 DKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLYYRLSAAKINVPPLRKRRED 319 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 IP L H +++ + + ID + +AL ++M +DWPGNVREL NV+ A + TRG +L Sbjct: 320 IPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVRELRNVLTGAAISTRGETL- 378 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN-DEEERQRIVQVLRETNGIVAGPRG 643 +LP L ++ + P + E ER+ I+++L TNG + Sbjct: 379 -----LDDAILPFLGA-----GTVQDIFPPGAALSLREVEREHILKILHYTNGNIT---S 425 Query: 644 AATRLGMKRTTLLSRMQRLGI 664 +A LG+ R TL ++++ I Sbjct: 426 SAQILGISRPTLRQKIRQYKI 446 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 159/353 (45%), Positives = 208/353 (58%), Gaps = 46/353 (13%) Query: 343 GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402 G G II AM ++ + V VA D VLI GE+GTGKE++ARA+HQ S R +P V + Sbjct: 138 GTGPIIGSCPAMMEVYKAVGRVAPQDVPVLITGESGTGKELVARAVHQYSRRAGRPFVAL 197 Query: 403 NCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRV 462 NCAAIP LLESELFGH+KGAFTGA GRFE DGGTLFLDEIGD+PL LQ KLLRV Sbjct: 198 NCAAIPEQLLESELFGHEKGAFTGADRRRIGRFEQCDGGTLFLDEIGDMPLALQSKLLRV 257 Query: 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522 LQE+ ER+GG T+ +VR+I+AT+RDL FR DL+YRL VF + LPPLRDR Sbjct: 258 LQEQAFERVGGGETVRTDVRIISATHRDLKARAAAGTFRPDLYYRLGVFTMRLPPLRDRA 317 Query: 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS 582 ED+PLL +HF + R + R + I EAL +L + WPGN+REL++V+++A+L T G Sbjct: 318 EDLPLLVRHFLGRFNRELGRRVSDISAEALARLTQYAWPGNLRELQSVLKQALLRTTGTV 377 Query: 583 LNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT-TPENDEEERQRIVQVLRE--TNG--- 636 L L S++A + P+ P ++ R + Q +R ++G Sbjct: 378 L--------------------LPSALADMAGPSAAPASEPPARADLHQFVRRRLSDGSEN 417 Query: 637 ----------------IVAGPRG----AATRLGMKRTTLLSRMQRLGISVREV 669 ++ RG AA LG+ R TL R+ LGI+ R V Sbjct: 418 LLEEARLELDRFLLPMVMELTRGNQVRAARVLGVARLTLRRRLHELGIAPRFV 470 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 151/344 (43%), Positives = 215/344 (62%), Gaps = 30/344 (8%) Query: 348 IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI 407 I++S M L VA S++TVLI GE+GTGKEV AR IH+ S R V +NCAA+ Sbjct: 138 IFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHENSNRSSGAFVAVNCAAL 197 Query: 408 PASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQERE 467 P +L+ESELFG++KGAFTGA+N G+FE+ADGGT+ LDE+G++PL LQ KLLRVLQE+E Sbjct: 198 PENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGEIPLHLQAKLLRVLQEKE 257 Query: 468 IERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPL 527 +ERLGG++ +NVR++A TN+ L + V++ FR DL+YRLNV +ELPPLR+R EDI Sbjct: 258 VERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNVISIELPPLRERKEDIME 317 Query: 528 LAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL---N 584 LA F +K A+ + + +A++ L+ +DWPGNVRELE+ IERAV+L R + N Sbjct: 318 LATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELEHTIERAVVLCRDGVISERN 377 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE---------------ERQRIVQ 629 L L+ T+N+ + +A T E E+ ER+ I++ Sbjct: 378 LFLHG------ITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGTIAEMERELIIK 431 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTL---LSRMQRLGISVREVL 670 L+ET G AA LG+ TL L+ + G+++ +++ Sbjct: 432 TLKETGG---NRTKAADMLGITVRTLRNKLNEYKENGLNIEDII 472 >UniRef50_B4SIJ8 Sigma54 specific transcriptional regulator, Fis family n=13 Tax=Proteobacteria RepID=B4SIJ8_STRM5 Length = 501 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 159/354 (44%), Positives = 215/354 (60%), Gaps = 47/354 (13%) Query: 353 AMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLL 412 A+ +L ++ VA D+TVL+ GE+GTGKEV++R+IHQ SPRRD P V INC AIP LL Sbjct: 144 AVTELRTMIEQVAAFDTTVLVLGESGTGKEVVSRSIHQRSPRRDGPFVAINCGAIPPDLL 203 Query: 413 ESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLG 472 ESELFGH+KGAFTGA+ +GRFE+A+GGTL LDEIGD+ L +Q KLLRVLQER ER+G Sbjct: 204 ESELFGHEKGAFTGALTARKGRFEMAEGGTLLLDEIGDMSLPMQVKLLRVLQERSFERVG 263 Query: 473 GSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHF 532 G++TI NVRV+AAT+RDL + + +FR DLFYRLNVFP+++P LR+R ED+P+L + Sbjct: 264 GNQTIRCNVRVVAATHRDLETRIAEGKFREDLFYRLNVFPIDVPALRERREDLPVLVETI 323 Query: 533 TQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH------ 586 ++AR R EAL+ L ++WPGNVREL N++ER +L G S+ + Sbjct: 324 AAQLAR-TGRGEVRFTAEALQALAGYEWPGNVRELTNLVERLAVLHPGGSVRVQDLPARY 382 Query: 587 -----------------------LNVRQ-SRLLPTLNEDSALRSSMAQLLHPTTPEN--D 620 L++R S P AL +A + P P D Sbjct: 383 RGDAVLAAVAAPAPAQPVASEERLDLRSFSFHTPGSGNQPALEHGIA-VNRPAAPVALPD 441 Query: 621 EEERQR----------IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E R I + L T G+VA AA LG++RTTL+ ++++ G+ Sbjct: 442 EGMDLRNHMANIELGLINEALERTQGVVA---HAAQLLGLRRTTLVEKLRKYGV 492 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 159/349 (45%), Positives = 215/349 (61%), Gaps = 33/349 (9%) Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 EN L E G+ I S AM+ L + + VA +TVL+ GETGTGKE++ARAIH Sbjct: 129 ENRFLREDKADTTGL---IGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELVARAIH 185 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 SPR + V +NCAAIP +LESELFGH+KGAFTGA+ G+FE+ADGGTLFLDE+ Sbjct: 186 AASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLFLDEVT 245 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 ++P++LQ KLLR LQE IERLGG+R I V++RV+AATNR+ ++D + R DL+YRLN Sbjct: 246 EMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDLYYRLN 305 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VF ++LP L+ R DI LLA HF K R +D I +A++ LM +DWPGNVRELEN Sbjct: 306 VFRIDLPALKARKSDIELLATHFLAK------RRVD-ISAQAVQVLMQYDWPGNVRELEN 358 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPT--LNEDSALRSSMAQLLHPTT---PEN----- 619 V+ERA +++ + Q + LP LN + + A + T P+N Sbjct: 359 VLERAAIISGNQQI-------QPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLP 411 Query: 620 ---DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ++ ERQ I + L +TNG AA L + +L ++ + GIS Sbjct: 412 NAVEQLERQLIAKALAQTNG---NKSKAAKLLEISERSLWYKLSQYGIS 457 >UniRef50_A9A0C3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A9A0C3_DESOH Length = 481 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 176/408 (43%), Positives = 241/408 (59%), Gaps = 36/408 (8%) Query: 277 HTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSE 336 TP ++L ++ S SEE+ QL+ AD + + + + +S+ + ES + QL + Sbjct: 74 ETPTTVVLHNSDS---SEEHAQLVGAGAD---VVLYDGISRKSLIEAIESTLESRRQLIQ 127 Query: 337 QL-LSNLG-----IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 + L+ G +GD I QSQ+M+ L++ V V S++ +L+ GETG GKE +ARAIH Sbjct: 128 KTRLTARGQASPKLGDFISQSQSMQLLMEDVWKVIPSNAPLLVLGETGVGKEHLARAIHS 187 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 SPR P +N AA+ LLESELFGH++GAFTGAI + RG FE+A GGT+FLDEIG+ Sbjct: 188 ESPRSAGPFTAVNAAALQEQLLESELFGHEEGAFTGAIRSRRGAFEMAHGGTIFLDEIGE 247 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 +PL LQ KLLRVLQ+ EI +G R+ V++RVIAATN+DL VE + FR DLFYRL V Sbjct: 248 MPLHLQAKLLRVLQDYEIRPVGSERSTWVDIRVIAATNQDLALAVEKQTFRKDLFYRLGV 307 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENV 570 L +PPL DR EDIP + F + + + I + A+ L ++WPGNVREL NV Sbjct: 308 ITLTIPPLSDRKEDIPGMVHRFIEHYQLKIGKEIRGVTEAAMAALCQYEWPGNVRELMNV 367 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL-RSSMAQ-LLHP------TTPENDEE 622 IERA+LL + + L N +AL + +M Q L P T P+ +E Sbjct: 368 IERAILLCPQEIIGIE------DLPYIFNSPAALSKDAMTQGALDPAAWKGKTLPQVRQE 421 Query: 623 ERQRIVQ-----VLRETNGIVAGPRGAATRL-GMKRTTLLSRMQRLGI 664 R+ Q VLRET G V G A R+ G+ L ++MQRLGI Sbjct: 422 VMDRVEQAYLQMVLRETRGRV----GEAARMAGIHTRALYNKMQRLGI 465 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 151/340 (44%), Positives = 218/340 (64%), Gaps = 8/340 (2%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Q +Q+E +L S G+G ++ SQ M+D+ ++ VA ++ +VLI GE+GTGKE+ Sbjct: 142 QLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKEL 201 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +A+ +H+LSPR++KP V +NCAAIP +L+ESE+FGH+KGAFTGAI G FE+A+ GTL Sbjct: 202 VAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTL 261 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 LDEIG++P+ Q KLLRVL++R RLG P++VRV+AATN++ Q V D + R D Sbjct: 262 LLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGD 321 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRLNVF + +PPLR+ EDIP +A+ M +RAI+ + E +L+S+DWPGN Sbjct: 322 LYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWPGN 381 Query: 564 VRELENVIERAVLLTRGNSLNL-HL--NVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 VREL N +ERAV+L G+ L HL +R L T + ++ Q+ TT D Sbjct: 382 VRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVEVGTT--VD 439 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 E ER I++ L T+ AA LG+ TL ++++ Sbjct: 440 EAERLLILKTLESTHN---NKTRAAEILGISLKTLHNKLK 476 >UniRef50_Q485M5 Flagellar regulatory protein A n=19 Tax=Gammaproteobacteria RepID=Q485M5_COLP3 Length = 509 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 129/231 (55%), Positives = 172/231 (74%), Gaps = 1/231 (0%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 ++ S+ M + ++ VAK+ ++VL+ GE+GTGKEVIAR IH LS R + V +NC A Sbjct: 144 LVGSSEPMAQVRFLIEQVAKTPASVLVLGESGTGKEVIARNIHNLSDRAKEAFVPVNCGA 203 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IPA LLESELFGH+KGAFTGAI+T +GRFE+A+GGTLFLDEIGD+P +Q KLLRVLQER Sbjct: 204 IPAELLESELFGHEKGAFTGAISTRKGRFELAEGGTLFLDEIGDMPQPMQVKLLRVLQER 263 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 ER+GGS++I NVR++AAT++DL +M+++ FR DLFYRLNVFP++ P LR+R EDIP Sbjct: 264 TFERVGGSKSIKANVRIVAATHQDLEEMIKEGSFREDLFYRLNVFPIDTPSLRERKEDIP 323 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLL 577 LL K + N+ + +A+ LM WPGNVREL N+IER +++ Sbjct: 324 LLLKELLTRFEHEQNKTV-RFTEKAIESLMEHPWPGNVRELSNLIERMLIM 373 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 221/378 (58%), Gaps = 10/378 (2%) Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 D A C + R + GE L+ ++ A D+ + L LL + G E + Sbjct: 8 DDEAFICENVQRILSGEGFLVCAAGSGKE------ARDIVAGEEIDLALLDLNLGSEDGI 61 Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQ---E 325 + + P L++ T E + LQ A ADA R + L + Sbjct: 62 EVLKSLKETDPELLVIIITGYGSV-ESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQ 120 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 +L++E +L G II +S+A +++ QV +A+ STVLI GE+GTGKEV+A Sbjct: 121 TLKREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVA 180 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 RAIH LS R+++ + INCA+IPA LLESELFGH+KGAFTGA +G FE A GT+FL Sbjct: 181 RAIHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFL 240 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIG++ + +Q KLLRVLQER I R+G + I ++ RVIAATNR+L + +E++ FR DLF Sbjct: 241 DEIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLF 300 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNVFP+ +PPLR+RP DI LA +F +R R + EA + + + WPGNVR Sbjct: 301 YRLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVR 360 Query: 566 ELENVIERAVLLTRGNSL 583 EL NVIER ++ G +L Sbjct: 361 ELRNVIERICIMRSGPTL 378 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 1050 0.0 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 713 0.0 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 711 0.0 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 709 0.0 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 701 0.0 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 675 0.0 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 668 0.0 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 653 0.0 UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis F... 622 e-176 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 615 e-174 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 601 e-170 UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator... 600 e-170 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 595 e-168 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 592 e-167 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 591 e-167 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 587 e-166 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 586 e-166 UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing pr... 585 e-165 UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax... 585 e-165 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 576 e-163 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 575 e-162 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 572 e-161 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 572 e-161 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 571 e-161 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 568 e-160 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 567 e-160 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 567 e-160 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 565 e-159 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 564 e-159 UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regula... 564 e-159 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 562 e-158 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 562 e-158 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 561 e-158 UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis f... 561 e-158 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 559 e-157 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 558 e-157 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 555 e-156 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 551 e-155 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 549 e-154 UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desu... 549 e-154 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 548 e-154 UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis F... 548 e-154 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 548 e-154 UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis ... 547 e-154 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 547 e-154 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 546 e-154 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 545 e-153 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 543 e-153 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 543 e-153 UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis F... 542 e-152 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 542 e-152 UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulato... 542 e-152 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 541 e-152 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 540 e-152 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 540 e-152 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 540 e-152 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 539 e-151 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 539 e-151 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 537 e-151 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 536 e-151 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 535 e-150 UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with ... 535 e-150 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 535 e-150 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 535 e-150 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 534 e-150 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 534 e-150 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 533 e-150 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 533 e-149 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 532 e-149 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 532 e-149 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 532 e-149 UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-bind... 531 e-149 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 531 e-149 UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis F... 530 e-149 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 530 e-149 UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pire... 529 e-148 UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Prote... 529 e-148 UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with ... 528 e-148 UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis F... 527 e-148 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 527 e-148 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 526 e-148 UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis ... 526 e-147 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 525 e-147 UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-ty... 525 e-147 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 525 e-147 UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis ... 523 e-147 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 523 e-147 UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator,... 523 e-146 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 523 e-146 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 523 e-146 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 522 e-146 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 522 e-146 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 522 e-146 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 521 e-146 UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 in... 521 e-146 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 521 e-146 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 520 e-146 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 520 e-146 UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis F... 520 e-146 UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis ... 520 e-146 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 520 e-145 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 520 e-145 UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis F... 519 e-145 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 519 e-145 UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional... 519 e-145 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 519 e-145 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 519 e-145 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 519 e-145 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 519 e-145 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Ga... 517 e-145 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 517 e-145 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 516 e-144 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 515 e-144 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 515 e-144 UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis F... 514 e-144 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 513 e-144 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 512 e-143 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 512 e-143 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 511 e-143 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=... 510 e-143 UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spir... 510 e-143 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 509 e-142 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 509 e-142 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 509 e-142 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 508 e-142 UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 ... 508 e-142 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 508 e-142 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 508 e-142 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 508 e-142 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 508 e-142 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 508 e-142 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 508 e-142 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 508 e-142 UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobi... 508 e-142 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 507 e-142 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 507 e-142 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 507 e-142 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 507 e-142 UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Ca... 507 e-142 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 506 e-141 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 505 e-141 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 504 e-141 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 504 e-141 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 504 e-141 UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis F... 504 e-141 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 503 e-141 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 503 e-141 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 503 e-141 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 503 e-141 UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis ... 503 e-140 UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional r... 503 e-140 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 503 e-140 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 502 e-140 UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desul... 502 e-140 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 502 e-140 UniRef50_B2S230 Formate hydrogenlyase transcriptional activator ... 502 e-140 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 502 e-140 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 502 e-140 UniRef50_C7LQX0 Sigma54 specific transcriptional regulator with ... 501 e-140 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 ... 500 e-140 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 500 e-139 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 499 e-139 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 499 e-139 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 499 e-139 UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis F... 499 e-139 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 499 e-139 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 499 e-139 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 498 e-139 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 498 e-139 UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobi... 496 e-138 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 496 e-138 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 496 e-138 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 496 e-138 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 495 e-138 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 495 e-138 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 495 e-138 UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 494 e-138 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_Q7UK84 Probable two-component response regulator n=1 Ta... 493 e-138 UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis F... 493 e-138 UniRef50_Q12K16 DNA-binding protein Fis / transcriptional regula... 493 e-138 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 493 e-138 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 492 e-137 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 492 e-137 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 492 e-137 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 492 e-137 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 492 e-137 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 492 e-137 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 491 e-137 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 491 e-137 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 491 e-137 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 491 e-137 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 491 e-137 UniRef50_P26047 Signal-transduction and transcriptional-control ... 491 e-137 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 490 e-137 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 490 e-137 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 490 e-137 UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 490 e-137 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 490 e-136 UniRef50_Q6ARB9 Probable two-component system response regulator... 489 e-136 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 489 e-136 UniRef50_C7PDE5 Sigma54 specific transcriptional regulator, Fis ... 489 e-136 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 489 e-136 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 488 e-136 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis F... 488 e-136 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 488 e-136 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 488 e-136 UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 488 e-136 UniRef50_Q3A203 Two component signal transduction response regul... 488 e-136 UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphapro... 488 e-136 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 487 e-136 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 487 e-136 UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Des... 487 e-136 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 487 e-136 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 487 e-136 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 486 e-135 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 486 e-135 Sequences not found previously or not previously below threshold: UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 501 e-140 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 498 e-139 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 494 e-138 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 494 e-138 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 493 e-137 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 493 e-137 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 488 e-136 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 487 e-136 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 487 e-136 UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-ty... 487 e-136 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 1050 bits (2715), Expect = 0.0, Method: Composition-based stats. Identities = 670/670 (100%), Positives = 670/670 (100%) Query: 1 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK 60 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK Sbjct: 1 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK 60 Query: 61 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF 120 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF Sbjct: 61 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF 120 Query: 121 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE 180 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE Sbjct: 121 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE 180 Query: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL Sbjct: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 Query: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL 300 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL Sbjct: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL 300 Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ Sbjct: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD Sbjct: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN Sbjct: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM Sbjct: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE Sbjct: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ Sbjct: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 Query: 661 RLGISVREVL 670 RLGISVREVL Sbjct: 661 RLGISVREVL 670 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 286/610 (46%), Positives = 386/610 (63%), Gaps = 14/610 (2%) Query: 62 NFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFN 121 Y + + + A Y Y + FIR ++ ++ Sbjct: 96 CSYEEFCETWPQLDAGGLYPKFGH-YCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQ 154 Query: 122 WLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREI 181 +I++ V + + V LL ++RD+ R+LV ITNAVLS LD+D+L+++VA+EI Sbjct: 155 TFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEI 214 Query: 182 HHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLT 241 H++F + +S+VL HRKN+ L H A + L + ++++ L Sbjct: 215 HYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLI 274 Query: 242 HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQ 301 + + L + +L N ++ L+PL G+ G L LA +F+ N LL+ Sbjct: 275 NLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR 334 Query: 302 HIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS-NLGIGDIIYQSQAMEDLLQQ 360 IA+R+AIAV NA A++ + L+E L EN L+EQL + + G+II +S+AM +L+Q Sbjct: 335 QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQ 394 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 V++VA+SDSTVLI GETGTGKE+IARAIH LS R ++ +VK+NCAA+PA LLES+LFGH+ Sbjct: 395 VEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 454 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 +GAFTGA GRFE+AD +LFLDE+GD+PLELQPKLLRVLQE+E ERLG ++ I + Sbjct: 455 RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTD 514 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VR+IAATNRDL +MV DR+FRSDL+YRLNVFP+ LPPLR+RPEDIPLLAK FT K+AR + Sbjct: 515 VRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRL 574 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 R ID+IP E LR L + +WPGNVRELENVIERAVLLTRGN L L L Sbjct: 575 GRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLP------------ 622 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 D L E+E Q IV+VL+ETNG+VAGP+GAA RLG+KRTTLLSRM+ Sbjct: 623 DIVLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 Query: 661 RLGISVREVL 670 RLGI ++ Sbjct: 683 RLGIDKSALI 692 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 278/610 (45%), Positives = 374/610 (61%), Gaps = 27/610 (4%) Query: 87 YSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRL 146 Y + + + + FI + + + D T +A +I +++ L E +Q+ Sbjct: 120 YCQMPLTTSQRRLGGVEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEER 179 Query: 147 LEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW 206 L +RDH+ +LV++TNAV+S L L+DL+ +V+R IH FFG+ VS+ L D S Sbjct: 180 LRGERDHNHILVEVTNAVISKLKLEDLVDEVSRSIHRFFGVDFVSLDLVDPATATIKSRS 239 Query: 207 CSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCES 266 P + + +T+ P + RAD L + + LL + G + Sbjct: 240 VYFQKGLGPVWGSAQGPLGASPMAPLFETKAPRILARADLGALARGHDQMTLLTNAGFQV 299 Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 A IPL H G L LA F++ N LL +A RI IAV NA A+ ++ L++ Sbjct: 300 ACGIPLLSAGHVLGVLTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLKDQ 359 Query: 327 LQQENH-------QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 L +EN L E++ GDII S A+ +L+QV++VA SDSTVLI GETGT Sbjct: 360 LSRENKQLAKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGT 419 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE+IARAIH LS R+ + ++K+NCAAIP++LLES+LFGH+KGAFTGAI GRFE+AD Sbjct: 420 GKELIARAIHMLSQRKKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELAD 479 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GTLFLDE+GD+P++LQPKLLR LQEREIER+GG + IPV+VR+IAATNRDL MVE R Sbjct: 480 RGTLFLDEVGDIPIDLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRL 539 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR DL+YRLNVFP+ +PPLR+R EDIPL+A +F +K AR MNRAI+A E + L++ Sbjct: 540 FRGDLYYRLNVFPILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNLP 599 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLH--------------------LNVRQSRLLPTLN 599 WPGNVREL+NVIERAV+LT+G L+L + +R + L + Sbjct: 600 WPGNVRELQNVIERAVILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSAAS 659 Query: 600 EDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 L +P + ER +I++VLRETNGIV GPRGAA LGMKRTTLLSRM Sbjct: 660 APDPLPPPAGSSPNPGDLAGEAIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRM 719 Query: 660 QRLGISVREV 669 +RLGIS +EV Sbjct: 720 RRLGISPKEV 729 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 285/605 (47%), Positives = 391/605 (64%), Gaps = 14/605 (2%) Query: 62 NFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFN 121 ++ + + + A+ Y E Y + FIR ++ ++ + Sbjct: 96 CNFHEFTETWPQLAASGLYP-EFGHYCLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLH 154 Query: 122 WLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREI 181 +I+ V + N V LL ++RD+ R+LV ITNAVLS LD+D+L+++VA+EI Sbjct: 155 TFTQIVGVVAEQIQNRVNNNVDYDLLCRERDNFRILVAITNAVLSRLDIDELVSEVAKEI 214 Query: 182 HHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLT 241 HH+F + ++S+VL HRKN+ L H A + L + ++++ L Sbjct: 215 HHYFNIDAISIVLRSHRKNKLNIYSTHYLDEHHPAHEQSEVDEAGTLTERVFKSKEMLLI 274 Query: 242 HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQ 301 + + L + +L N ++ L+PL G G L LA +F+ N +LL+ Sbjct: 275 NLNERDPLAPYERMLFDTWGNQIQTLCLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLR 334 Query: 302 HIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS-NLGIGDIIYQSQAMEDLLQQ 360 IA+R+AIAV NA A++ + L+E L EN L+EQL + + G+II +S+AM ++L+Q Sbjct: 335 QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYNVLKQ 394 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 V++VA+SDSTVLI GETGTGKE+IARAIH LS R + +VK+NCAA+PA LLES+LFGH+ Sbjct: 395 VEMVAQSDSTVLILGETGTGKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHE 454 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 +GAFTGA GRFE+AD +LFLDE+GD+PLELQPKLLRVLQE+E ERLG ++ I + Sbjct: 455 RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTD 514 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VR+IAATNRDL +MV DR+FR+DL+YRLNVFP++LPPLR+RPEDIPLL K FT K+AR M Sbjct: 515 VRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLVKAFTFKIARRM 574 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 R ID+IP E LR L S +WPGNVRELENV+ERAVLLTRGN L L L Sbjct: 575 GRNIDSIPAETLRTLSSMEWPGNVRELENVVERAVLLTRGNVLQLSLP------------ 622 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 D + + + + E+E Q I++VL+ETNG+VAGP+GAA RLG+KRTTLLSRM+ Sbjct: 623 DITAVTPDTSPVATESDKEGEDEYQLIIRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK 682 Query: 661 RLGIS 665 RLGI Sbjct: 683 RLGID 687 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 701 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 250/611 (40%), Positives = 364/611 (59%), Gaps = 13/611 (2%) Query: 66 RYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLAR 125 R+ + +T Y G + Y + + S + + FI + F + LA Sbjct: 99 RFRHRCEQLASTPVYDG-LHSYCQLPITTARSHLGGVEFISREANAFPMETLAKLTQLAA 157 Query: 126 IITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFF 185 I+ L++ L+ E L +RD ++LVD+TNAV+ + + +L + +HH F Sbjct: 158 IVAIALENVLDKERTLEQANSLRLERDSCKILVDVTNAVIKLVRIAELPQSLFTILHHHF 217 Query: 186 GLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD 245 G++S+ + + ++ F + + + E L L +P +R Sbjct: 218 GISSLCLA-EYNATSDSFKSYLVNQQQREQPGIINHSCFEKNCLQGALGHSEPFFLYREQ 276 Query: 246 DLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 + +S+ ++PL + + G L+L+H + F++ + LL+ +A Sbjct: 277 GHGCQSSCRFTSQILPPDADSSCILPLRYRGNLLGVLILSHPQADFFADLDISLLEQVAA 336 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 R AIA+ N A + +++ + +E + +IIYQS ME +L++V +VA Sbjct: 337 RTAIAMNNVQAQQEISNTTGA--REKTLRVDGPAPQGDFANIIYQSAVMEKVLEKVKLVA 394 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 +SD TVLI GETGTGKE+IA+AIH LS R D +VK+NCAAIP L+ES+LFGH+KGAFT Sbjct: 395 QSDCTVLILGETGTGKELIAQAIHALSARHDHEMVKVNCAAIPTGLIESDLFGHEKGAFT 454 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA+ GRFE A GTLFLDE+GD+PL+LQPKLLRVLQE E+ER+G S I ++VR++A Sbjct: 455 GALTQRIGRFERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVA 514 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATN DL MV++++FRSDL+YRLNVFP+ELPPLR+R EDIPLL F +K+A+ M R I Sbjct: 515 ATNCDLLSMVKNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTIT 574 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH----LNVRQSRLLPTLNED 601 +IP +A++ L+S W GN+RELEN+IERAV++TRG+ LNL L ++ + TL D Sbjct: 575 SIPADAMKMLVSLPWYGNIRELENIIERAVVMTRGHVLNLSPDELLPLKGFHKIETLVYD 634 Query: 602 SALRSSMAQLLHPTTPENDEE----ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS 657 R + L P P+ DE ER I++ L+ NGIVAG RGAA RLGMKRTTLLS Sbjct: 635 EPARELFREPL-PALPQGDEAQGEDERVSIIRALKACNGIVAGERGAAQRLGMKRTTLLS 693 Query: 658 RMQRLGISVRE 668 +M+RLGIS ++ Sbjct: 694 KMKRLGISAKD 704 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 238/666 (35%), Positives = 373/666 (56%), Gaps = 70/666 (10%) Query: 54 IELHVLKSNFYYRYHDDGSDVTATTEYQG--EMVD---------YSRHAVLLGSSGMAEL 102 + LH + S YY D++ YQ ++VD Y + +L+ + + Sbjct: 93 LALHKIASCEYYH------DISGHELYQTFPQLVDHPAYYDVNRYCKIPLLIAGKPLGAI 146 Query: 103 RFI--RTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDI 160 +I + S + + LFN +I +++ + + + L ++ + +VLVDI Sbjct: 147 EYINHKLADSIESERQFKLFN---NMIAAMIEHIIEHQLASDFTQQLSNEKKNFQVLVDI 203 Query: 161 TNAVLSHLDLDDLIADVAREIHHFFGLASVSMV-LGDHRKNEKFSLWCSDLSASHCACLP 219 TN V+S +LI+ + ++ F + +S++ L D+ + F ++ + HC Sbjct: 204 TNTVISQSTKKELISSLLHFLYQHFAMTELSIIQLQDNHYMQMFCGLNNNNTEFHCHFF- 262 Query: 220 RCMPGESVLLTQTLQTRQPTLT--HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNH 277 + ++ ++ +P L ++ + + + P + +SA ++P+ F Sbjct: 263 ----NDDKMIKHAIENNKPVLLDHNQLEQIRQDENGPYF----PSKVKSACIVPMVFRGL 314 Query: 278 TPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQ 337 T G + + + + + +L+Q IA R+A+A+ + A ++ E+ ++ + E Sbjct: 315 TIGYICYMKRETLNYQQYDIELVQQIASRVALAMHSIKAHQATLPRTET--EQYVSIEES 372 Query: 338 LLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDK 397 + DII QS+AM +L++V +VA DSTVLI GE+GTGKE+IARAIH++S R Sbjct: 373 YDEHAIFDDIISQSEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAIHKMSLRSKT 432 Query: 398 PLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQP 457 +VK+NCAAIPA L ESELFGH++GAFTGAI+ GRFE A GTLFLDEIGD+PLELQP Sbjct: 433 RMVKMNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQP 492 Query: 458 KLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPP 517 KLLR LQE EIER+G ++ I V+VR++ ATN DL MV+ +QFR+DL+YRLNVFP+E+PP Sbjct: 493 KLLRALQENEIERVGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRLNVFPIEVPP 552 Query: 518 LRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLL 577 LR R EDIPLL KHF +++A+ M + I AI L + + WPGNVREL N +ER+V+L Sbjct: 553 LRQRAEDIPLLVKHFARQLAQKMGKKITAIAASDLELMQRFSWPGNVRELHNFVERSVIL 612 Query: 578 TRGNSLNLHLN--------------------------VRQSRLLPTLNEDSALRSSMAQL 611 TRG+ LN+ ++ ++Q++ LP + L SS ++ Sbjct: 613 TRGHVLNIPVDELISLQPHIVQNSRKMESQASLSKTSLKQAQELPQVASIDDLTSSGSES 672 Query: 612 LHPTTPENDEEERQ--------RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + E ++ I+ L+ G++AGP GAA LG+KRTTLLSRMQ++G Sbjct: 673 VCSVDTAAKNEVKKVRPIVDQSMIINALKRCQGVIAGPNGAANMLGLKRTTLLSRMQKMG 732 Query: 664 ISVREV 669 IS ++ Sbjct: 733 ISSQDY 738 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 236/581 (40%), Positives = 340/581 (58%), Gaps = 22/581 (3%) Query: 86 DYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALR 145 + + + + ++ + +A + LN E QVA Sbjct: 133 SICALPLTTVHRRIGSVAVASKRPDAYCKEEVRFLSLVADQAALAIDDALNFETSQVAQA 192 Query: 146 LLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSL 205 L++ D R+L+++ N++ S+L+L +L+ ++ I V + L + N++ + Sbjct: 193 ALQRKNDRLRLLLEVNNSIASNLELRELLRAISASIRPVMQCDGVGVALPEGE-NQQLRV 251 Query: 206 WCSDLSASHCACLPRCM--PGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNG 263 + D + + E + Q +P A DP L + G Sbjct: 252 YALDFPNGNGRVREDILIPANEDSPGARAFQNGEPANILSAS------IDPTDPLATAEG 305 Query: 264 CESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL 323 ++ IPL N T G L LA FS + + L + +++AIAV NA A+ ++ L Sbjct: 306 LKAVCHIPLISRNRTVGLLSLARLEPVAFSPRDIEFLSLVGNQVAIAVENALAYHEISAL 365 Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 ++ L QE L +++ S L +I+ +SQA+ +LQ+++ VA +DSTVLI GETGTGKE+ Sbjct: 366 KDRLAQEKIYLEDEIRSELNFEEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGKEL 425 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 IARAIH LS R VK+NCAAIP LLESE+FGH+KGAFTGA+ GRFE+A GT+ Sbjct: 426 IARAIHNLSSRSRNSFVKLNCAAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHGTV 485 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG++PLELQPKLLRVLQERE ERLG SRT+ + R+IAATNRDL MVEDR FR+D Sbjct: 486 FLDEIGEIPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRDLATMVEDRNFRAD 545 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNVFP+++P LRDRPEDIPLL +HF Q+ AR M +A+D IPTE + L+ + WPGN Sbjct: 546 LFYRLNVFPVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTETMNVLVRYHWPGN 605 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 +REL+N++ERAV+L+ G L + LN Q + A T + E Sbjct: 606 IRELQNLLERAVILSAGPVLKVPLNDLQLQAP-------------APTTARKTETLESAE 652 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 R+ I++ L + +++GP+GAA LG+KR+TL +RM++LGI Sbjct: 653 RRHILEALEAADWVISGPKGAAEALGLKRSTLQARMEKLGI 693 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 7/213 (3%) Query: 149 KDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 + + + L+ ++ A+ +H D +L + RE+H + + D NE C Sbjct: 19 QSSERYEALIRVSQAIGAHRDPKELFRAMTRELHRVMQFDGIVIAQYDEASNEILWNAC- 77 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 ++ + A P +P + + Q ++P + D + R ++ L S G +S Sbjct: 78 EVCSQQGAVRPPDIPADETITKWVYQRQEPLVIPALDQETRFPR--MIEFLRSKGFQSIC 135 Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +PLT + G++ +A + +E + L +AD+ A+A+ +A + + Q +LQ Sbjct: 136 ALPLTTVHRRIGSVAVASKRPDAYCKEEVRFLSLVADQAALAIDDALNFETSQVAQAALQ 195 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQV 361 ++N +L L N I + + +LL+ + Sbjct: 196 RKNDRLRLLLEVNNS----IASNLELRELLRAI 224 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 231/622 (37%), Positives = 353/622 (56%), Gaps = 31/622 (4%) Query: 68 HDDGSDVTATTEYQG-----------EMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQD 116 D + T YQ + +Y + + + + + + +I S+ Sbjct: 101 RDYCHQMDGETLYQTFPQLENHPAYDSVFNYCKIPLSICNQPLGAIEYINLT-MPDDSES 159 Query: 117 CTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIAD 176 F +I+ +++ + + L ++++ +VLVD+TN V+S +LI Sbjct: 160 EKQFKLFNNMISAMIEHIIEHQTASTFTEKLTTEKNNFQVLVDVTNTVISQSTKKELIGS 219 Query: 177 VAREIHHFFGLASVSMV-LGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQT 235 + R ++ F + +S++ L D N+ + + ++ C L+ ++ Sbjct: 220 LLRFLYQHFDMTDLSIIQLQDGHYNQHSACFINNEIDYQCHFFTN-----DKLIKNAIKN 274 Query: 236 RQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEE 295 +P + A D+ Q D S ++A ++PL F G + + Sbjct: 275 NKPVFLN-AIDIKKMQADNNSPYFPSR-VKTACVMPLVFRGIAVGYISFMKPIEAPYQNT 332 Query: 296 NCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAME 355 + +L + IA R+A+A+ + ++ T Q + N + E + ++ DII QS+ M Sbjct: 333 DLELFKQIAARVALAMHSIKTHQASTPNQPITKFVN--IDEGMGEHVIFDDIISQSEVMN 390 Query: 356 DLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESE 415 +L+QV +VA DSTVLI GE+GTGKE+IARAIH+LS R +VK+NCAAIPA L ESE Sbjct: 391 KVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSKTDMVKMNCAAIPAGLFESE 450 Query: 416 LFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSR 475 LFGH++GAFTGAI+ GRFE A GTLFLDEIGD+PLELQPKLLR LQE EIER+G + Sbjct: 451 LFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLRALQENEIERVGKNA 510 Query: 476 TIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQK 535 I V+VR++ ATN DL + VE+++FR+DL+YRLNVFP+++PPLR+R EDIPLL KHFT++ Sbjct: 511 LISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIPPLRERAEDIPLLVKHFTRE 570 Query: 536 MARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN----VRQ 591 +A+ M + I AI E L + + WPGNVREL N +ER+V+LTRGN LN+ ++ V Sbjct: 571 LAKKMGKTITAIAAEDLAVMSVFPWPGNVRELRNFVERSVILTRGNVLNVPVHELKAVSH 630 Query: 592 SRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI-----VQVLRETNGIVAGPRGAAT 646 S +PT + + P + + I ++ L+ +G+VAGP GAA Sbjct: 631 SACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADVIKALKACHGVVAGPNGAAN 690 Query: 647 RLGMKRTTLLSRMQRLGISVRE 668 +LG+KRTTLLSRMQ++GI+ ++ Sbjct: 691 QLGLKRTTLLSRMQKMGINSQD 712 >UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Myxococcaceae RepID=A7HFP7_ANADF Length = 674 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 232/574 (40%), Positives = 322/574 (56%), Gaps = 18/574 (3%) Query: 101 ELRFIRTHGS-RFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALR-LLEKDRDHHRVLV 158 E R++R GS + S +L ++ + D +++ LR L+ +R+ R+L+ Sbjct: 107 EERYVRKGGSVMWVSNSVSLVPPRGGSRRILILGLVEDITERMRLRDELDAERNRLRLLL 166 Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACL 218 D+ +++HLDL ++ +A + + + L D E Sbjct: 167 DVNELLVAHLDLREMFQALASSLRRVTDCHFIGLALPDAATGELRQHIVDHPDGKGAITE 226 Query: 219 PRCMPGESVLLTQTLQTRQPTLTHRADDLFL-------WQRDPLLLLLASNGCESALLIP 271 +P + +T P L + + + + G S ++P Sbjct: 227 GMVLPLHGSASGKAFRTGAPVLLNDPEANRQDPDLYGTPEGARFYRTVLEEGVPSGYVLP 286 Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 L G L L + F E + + +A +++IAV NA +R + + +E L +E Sbjct: 287 LVHRGEVLGVLQLKKYADARFKEREIEFMSKVAGQLSIAVANALEYREVKESKERLDRER 346 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 L E++ S +II S+ ++ +L Q+D VA +DSTVLI GETGTGKE+IARAIH Sbjct: 347 VYLKEEIRSAHDFEEIIGVSRTLKQVLGQIDTVAVTDSTVLILGETGTGKELIARAIHNR 406 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S RRD+P VK+NC+AIP LLESELFGH++GAFTGA GRFE AD GTLFLDEIGDL Sbjct: 407 SRRRDRPFVKVNCSAIPTGLLESELFGHERGAFTGATAPRIGRFEAADQGTLFLDEIGDL 466 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 P++LQPKLLRVLQERE ERLG SRT V+VRV+AATNR L MV + +FR DL+YRLNVF Sbjct: 467 PVDLQPKLLRVLQEREFERLGASRTRRVDVRVVAATNRGLATMVGEGRFREDLYYRLNVF 526 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ LPPLR+R DIPLL +HF AR M + ID IP ++R L+ + WPGNVREL+NVI Sbjct: 527 PITLPPLRERAGDIPLLVRHFVGVYARRMGKQIDHIPDASMRALVGYHWPGNVRELQNVI 586 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 ERAV+LT G L L L R A E ER+ I+ L Sbjct: 587 ERAVILTPGAVLELALAER---------AAGAREDRPDAAAPNGHRTLQEVEREHILGAL 637 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 +E ++ GP GAA RLG++RT+L+ RM++LGI+ Sbjct: 638 QEAKWVIGGPNGAAARLGLRRTSLMYRMEKLGIA 671 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 194/548 (35%), Positives = 308/548 (56%), Gaps = 24/548 (4%) Query: 135 LNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSM-V 193 N ++ R++ K+++ VL+ ++NA+ + + DL + +++ F + + Sbjct: 15 QNRMLLEINERIIRKEQES-AVLLSLSNAIATIRNKYDLFEVIDQKLKTLFDFDEFVICL 73 Query: 194 LGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVL---LTQTLQTRQPTLTHRADDLFLW 250 + + +K L+ + A +P L L + + + +++ W Sbjct: 74 INEDKKTHSPFLYNQREDFRNAAGIPPASTKRYSLDDGLCEAMLASAHPIVFEVEEVMQW 133 Query: 251 QRDPLLLLLASN-GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAI 309 P+ L N G + + + + G L S S + LL I+ +I++ Sbjct: 134 PDPPIWLGFWQNKGIREMIGMKIFDRDECSGFFYLYAKKSNAVSNQYYSLLHSISLQISV 193 Query: 310 AVGNADAWRSMTDL-------QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 AV N A + + ++ L+ E L EQ+ + +++ QS A+ + ++ Sbjct: 194 AVSNIRANEKIEEQLQQINTYKQQLEDEKSYLQEQINTRYHHSEMVGQSSAIRQVFDLIE 253 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 VA SDSTVLI GETGTGKE++AR+IH LSPR+DK ++K+NCAA+PA+L+ESELFGH+KG Sbjct: 254 QVAASDSTVLILGETGTGKELVARSIHNLSPRKDKLMIKVNCAALPANLVESELFGHEKG 313 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 +FTGA G+FE+A GTLFLDEIG+L ++Q KLLR LQE+EIER+GG I NVR Sbjct: 314 SFTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIERIGGKGVIKTNVR 373 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 +IAATNR+L + VE+ FRSDL+YRLNVFP+ +PPLR+R EDI L+ HF Q +A+ R Sbjct: 374 IIAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSAHFIQHLAKKTGR 433 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 + + L+ L + WPGN+RELE++IER++LL+RGN +N +++ + + L + Sbjct: 434 QVKGMTKGVLKTLQEYPWPGNIRELEHLIERSILLSRGNIIN-EVHLPKVEHMEDLTSNK 492 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 +R E ER I+ +L+ G ++G GAA L + TTL S++++ Sbjct: 493 EIR----------IKTIFENERDHILNILKLCKGKISGNGGAAELLSIPATTLNSKIKKF 542 Query: 663 GISVREVL 670 I V+ Sbjct: 543 NIKKEHVI 550 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 241/572 (42%), Positives = 323/572 (56%), Gaps = 38/572 (6%) Query: 105 IRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQV------ALRLLEKDRDHHRVLV 158 IR GSRF W +IT L D+++Q+ L E+ R +L Sbjct: 242 IRKDGSRF---------WANVLITA-----LYDQQRQIIGYSKLTRDLTERRRAEEALLA 287 Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACL 218 +++ +VL L + ++ VA + S+ L D KN S S S + Sbjct: 288 ELSVSVLPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKNVLHSYILSAAGDS-GPEM 346 Query: 219 PRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHT 278 + ES L T + D Q L S+G +A +PL Sbjct: 347 ELSVAPESSPEAAVLHTHEALFLPSLQDSSFPQD--ALRHALSSGIHAAWWLPLVHEGRV 404 Query: 279 PGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQL 338 GAL + + + L +A +IA+ + +A R ++ + L++E L E+L Sbjct: 405 AGALCIGVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSAQTQKLKEEKRYLEEEL 464 Query: 339 LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKP 398 + +I+ +++ +L+QV+ VA +D+T LI GETGTGKE+IARAIH LS R Sbjct: 465 RTEYSFEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKELIARAIHNLSARDGHT 524 Query: 399 LVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPK 458 VK+NC++IP LLESELFGH+KGAFTGAI GR E+A GTLFLDEIGDLPL+LQPK Sbjct: 525 FVKVNCSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLDEIGDLPLDLQPK 584 Query: 459 LLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPL 518 LLR LQE+EIERLGG RTIPV+ R++AAT+RDL +MV+D QFRSDL+YRL VFP+ LPPL Sbjct: 585 LLRALQEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYYRLKVFPILLPPL 644 Query: 519 RDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 R R EDIP L +F K AR MN+ I+ IP + L+ W WPGN+RELEN +ERAV+LT Sbjct: 645 RQRREDIPELVNYFVAKHARRMNKHIEEIPEPVMSALVRWHWPGNIRELENFLERAVILT 704 Query: 579 RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 RG L L+ Q + T S L + ER I+QVLR+ +G++ Sbjct: 705 RGPLLRAPLSELQELNIETDEPQSTL---------------EAAERAHILQVLRDCDGVI 749 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 AG GAA RLG+KRTTL SRM++LGI RE L Sbjct: 750 AGAGGAAERLGLKRTTLNSRMKKLGIERREYL 781 >UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP7_9GAMM Length = 766 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 229/556 (41%), Positives = 324/556 (58%), Gaps = 27/556 (4%) Query: 137 DEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGD 196 +E + LE + H+ VLV++T AV+ ++ + L + + FG+ +S++ Sbjct: 216 EENRADVDAALEGNSLHNHVLVEVTEAVIGQVNFEGLATVLFLHLQEHFGIEFISIMSFS 275 Query: 197 HRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD-DLFLWQRDPL 255 + + P + +Q+++ R+D L + + Sbjct: 276 SDSESLSCHEVNQGKEGKAQYIESQKPKAKTMEEHVIQSKKTLQLSRSDYPLLKHKFLHV 335 Query: 256 LLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV---G 312 S+ S + PL F G + H + FSEE LL+ IA RI++A+ Sbjct: 336 DDHYMSHKLSSECVFPLLFRQQVLGVIKYGHRAEKYFSEERLDLLKQIAARISVAINYFQ 395 Query: 313 NADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVL 372 N+ + + ++ + + + S+ + G II QS+AM ++ Q+V +VA DSTVL Sbjct: 396 NSSKFMMKSTPKDLMSVDKTEQSKAM-----FGGIISQSKAMREVFQRVLMVADCDSTVL 450 Query: 373 ICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR 432 I GETGTGKE+IA IH S R K +VK+NC+A+P+ L ES+LFGH KGAFTGA+N Sbjct: 451 ILGETGTGKEMIANMIHNASNRSHKKMVKMNCSAVPSGLFESDLFGHVKGAFTGAVNQQV 510 Query: 433 GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLW 492 GRFE A + FLDEIGD+PL+LQPK+LR LQE EIER+G IPV+VR+IAAT+ DL Sbjct: 511 GRFEEAHKSSFFLDEIGDMPLQLQPKVLRALQEGEIERVGKHTIIPVDVRMIAATHCDLL 570 Query: 493 QMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEAL 552 MV+D FR DL+YRLNVFP+ +PPLR+R EDIPLLAKHFTQ ++ MNR I +I E L Sbjct: 571 SMVKDNSFRRDLYYRLNVFPIRIPPLRERREDIPLLAKHFTQLFSKKMNRDIQSISPETL 630 Query: 553 RQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP-----------TLNED 601 R L S WPGNVREL+NVIERAV++ +G L+L ++ + T E Sbjct: 631 RILYSLPWPGNVRELKNVIERAVIMNKGQVLHLPMSELKEYFPDIDPSPLCVQDGTKKEA 690 Query: 602 SALRSSMAQLLHPTTPEN-------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTT 654 ++ T P+N ER++I++VL+ETNGIVAGP+GAA RLG+KRTT Sbjct: 691 GCFPDTVDLYGENTIPKNVSAVKSVKSMEREQIIKVLKETNGIVAGPKGAAHRLGLKRTT 750 Query: 655 LLSRMQRLGISVREVL 670 LLSRMQRLGI+ +++ Sbjct: 751 LLSRMQRLGITSNDLI 766 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 206/586 (35%), Positives = 324/586 (55%), Gaps = 35/586 (5%) Query: 99 MAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLV 158 + + + + F++ D L + ++ ++ + L +E +++ +L+ Sbjct: 511 FGGMTLLAENINSFSADDMRLIERFSYHLSGLVANMLANE-------AIQQREKEKEILL 563 Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACL 218 + + + LIA + + + F +++ + + K F + +D+ + Sbjct: 564 SFSADIARTRGAEALIAVMRQRLKSIFHFNDITVGIFNAEKTA-FKVLVADVEERRTSHP 622 Query: 219 P------RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ-RDPLLLLLASNGCESALLIP 271 P + L + +P L + + L R P + + G + + Sbjct: 623 EFKEIAFAEYPIADGIHDMLLHSDKPELFYIENLLMKNPGRHPGIQFIFERGIKEIAGVK 682 Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADA-------WRSMTDLQ 324 L N G + + F + LL+ I+D++A+AV N A + + + Sbjct: 683 LVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAVANILADEKIGQQLKEINGYK 742 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 E L++E L +++ S DII M+ + + V+ + STVLI GETGTGKE+I Sbjct: 743 EKLEEEKLYLQQEISSVYTHTDIIGAGPEMQRVFHMLSQVSFAQSTVLILGETGTGKELI 802 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH SPR++K +VK+NCAA+PA+L+ESELFGH++G+FTGAI G+FE+A+ GTLF Sbjct: 803 ARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSFTGAIERRIGKFELANHGTLF 862 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG++PL+LQ KLLR +QEREIER+GG TI +VR+IAATNR+L + V + +FRSDL Sbjct: 863 LDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRNLQKEVAEGRFRSDL 922 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNVFP+ LPPLRDR EDI LLA HF ++ AR R + + A++QL +++WPGNV Sbjct: 923 YYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSSTAMKQLTAYNWPGNV 982 Query: 565 RELENVIERAVLLTRGNSL-NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 RELE+V+ER++LLT+GN + +HL+ + E+ R+ DE E Sbjct: 983 RELEHVLERSILLTQGNIIREIHLSSQPKSEAKVRQEEDFSRT------------LDEME 1030 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 R I+ VL + G + GP GAA LG+ +TL R+++LGI Sbjct: 1031 RDYILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLGIQKEHT 1076 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 202/507 (39%), Positives = 295/507 (58%), Gaps = 11/507 (2%) Query: 167 HLDLDDLIADVAREIHHFFGLASVSMVLGD---HRKNEKFSLWCSDLSASHCACLPRCMP 223 H DL L+ D+++ + +S L + H +F A A P +P Sbjct: 12 HTDLAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSADTPTELP 71 Query: 224 GESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALL 283 T++P D L A G A +PLT GA+ Sbjct: 72 AGESPTAHVWDTQEPLWLDVTADGRFP---VLRTAFAKQGVRCACFVPLTTPRRKLGAMA 128 Query: 284 LAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLG 343 + ++ + +A+AV A + + L E L E++ ++ Sbjct: 129 FTSYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIRADRR 188 Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 + +++ S+ ++++L+QV++VA +DS VL+ GETGTGKE++ARA+H+LS R ++ VK+N Sbjct: 189 MHEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFVKLN 248 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAAIP LLESELFGH+KGAFTGA+ GRFE+ADGGTLFLDE+GD+P ELQPKLLRVL Sbjct: 249 CAAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLLRVL 308 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QE+E ERLG ++T+ VNVR++AAT+R+L ++V + +FRSDL+YRL+VFP+ LP LRDR E Sbjct: 309 QEQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRDRRE 368 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 DIP L +HF A+ + I+ IP EA+ L + WPGNVREL+++IERAV+LT G+ L Sbjct: 369 DIPSLVRHFVALFAQRFGKRIETIPAEAMAALERYAWPGNVRELQHLIERAVILTTGSEL 428 Query: 584 NLHL-NVRQSRLLPTLNEDSALRSSMAQLLHPTTP----ENDEEERQRIVQVLRETNGIV 638 + L + + P + A+ ++ P E ER I + L ++ Sbjct: 429 RVPLGELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALDRCGWVI 488 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGIS 665 GP GAA +LG+KRTTLLSRM++LG++ Sbjct: 489 GGPNGAAAQLGLKRTTLLSRMKKLGLT 515 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 187/522 (35%), Positives = 307/522 (58%), Gaps = 23/522 (4%) Query: 147 LEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE-KFSL 205 +++ + L+++TNA+ S D+D L +A +I + L + + + +F Sbjct: 1 MQRATLNFETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYA 60 Query: 206 WCSDLSA---SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 ++++ +H + +PR G +V + + + +FL R Sbjct: 61 VITNMATPALAHDSVIPRE--GSAVGWVHDNRRLHIREDLQKEQVFLEDR-----YYVQE 113 Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 G + +PL +H G L + + +++C+ LQ +A +IA A+ + A+ + Sbjct: 114 GLGRMINMPLLVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQ 173 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L + L++EN L+E++ ++ + ++ S + ++ + VA +D+TVL+ GETGTGKE Sbjct: 174 LSDRLRRENEYLAEEVKASRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKE 233 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 V+A+A+H LS R KP +++NCAA+P+ L+ESELFGH++GAFTGA GRFE+A GT Sbjct: 234 VLAQALHDLSLRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGT 293 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDEIG++PLE Q KLLRVLQ+ ++R+GG++ + V+VR++AATN DL V FR+ Sbjct: 294 LFLDEIGEMPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRA 353 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DLFYRL++FP+ LPPLRDR EDI LLA+HF + + RA A +++ +L++++WPG Sbjct: 354 DLFYRLHIFPIALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPG 413 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 NVREL+NVIERAV+L+ + + + LLP + ++ + Sbjct: 414 NVRELQNVIERAVILSGSSQVTVD-----EMLLPVVQ-------AVHSPSSSLPVSLGDL 461 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ER I++VL +T + G +GAA LG+ TL SR+++LG+ Sbjct: 462 ERYHIIEVLEQTKWRIYGEQGAAHLLGLNPETLRSRLRKLGL 503 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 208/589 (35%), Positives = 310/589 (52%), Gaps = 27/589 (4%) Query: 91 AVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKD 150 + L + FT +D N +A I L + L EE +E Sbjct: 299 PIQLKRKAFTTIILSSIRADGFTQKDYQAVNLIAPQIALALDNLLAYEE-------IEAR 351 Query: 151 RDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDL 210 R + I NA + D +I VA I+ +++ Sbjct: 352 RQTKTTELAIVNAFQNGKDSHAIIPQVAAIINELMPFDLLAVYRIGRLLESAAIDMAVQK 411 Query: 211 SASHCACLPRCMPGESVLLTQTLQTR----------QPTLTHRADDLFLWQRDPLLLLLA 260 + L Q + +P + + + QR + A Sbjct: 412 QGGVFVAITEKDVVPQTLADQASWKQALADMETWLVEPAINVGQQFVDIQQRSVVSRFYA 471 Query: 261 SN-GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRS 319 G +S++ +P+ AL+LA ++ F+ ++ LQ I+ +A+A+ N A+ Sbjct: 472 EALGLKSSMYVPIFSKGKPIAALILASKAAYAFTPKDLCTLQDISVELALALENLSAYER 531 Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 + L E L+QE L+E++ ++ +II S +M+ + + VA +D TVLI GETGT Sbjct: 532 IKVLSEHLEQEKTYLAEEIKTSHNFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIMGETGT 591 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE+IARA+H LS RRD+P+VKINCAA+PA L+ESELFGH++G+FTGA G+FE+A+ Sbjct: 592 GKELIARAVHSLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGATEKRIGKFELAN 651 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDEIG+LPLELQ KLLR +QE+EIER+GG I +N R+IAATNR+L Q V + Sbjct: 652 GGTLFLDEIGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAAGR 711 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FRSDL+YRLNVFP+ +PPLR+R EDI L HF QK+++ + + I I +L+QL+ + Sbjct: 712 FRSDLYYRLNVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITNIANASLQQLLQYP 771 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN 619 WPGN+RELE+V+ER+ +L++ +L L +R + Sbjct: 772 WPGNIRELEHVLERSSILSQSATLTLAEPLR---------AATTAFPPFVVQSSEEVKSI 822 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 D+ R I+ L ++ + G GAA L +K TTL +RM++L IS + Sbjct: 823 DDAMRLAILAALAKSGNRIRGTGGAAELLNIKPTTLEARMKKLNISAYQ 871 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 204/516 (39%), Positives = 299/516 (57%), Gaps = 17/516 (3%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN--EKFSLWCSD 209 + ++T + S L++ + + FF L +S+ + D + + + +D Sbjct: 3 NRDEFFREVTVRICSSLEIKTALRSAFTYLREFFPLDMLSLGICDASLSAIRRVAHVTAD 62 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 + +H +P +PG+ Q + R P + + P L L ++G +L Sbjct: 63 STETHDEIIP--VPGQLWASLQRWEMRSPVMVDSDQSGLVRALAPHLKLDENSG----IL 116 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 +PL G G L L + F + LL +AD IA+ NA A + +++L Sbjct: 117 LPLWSGEGMLGWLTLYAWGAGRFDAGHVALLATVADPFVIALANALAHEKLLRYRDNLID 176 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 +N LS++L + G +I+ + + +++ V VA ++TVL+ GETGTGKE+IA AIH Sbjct: 177 DNRFLSKELFTQGG-DEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANAIH 235 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 SPR+D PL+K+NC AIP L++SELFGH+KGAFTGA+ RGRFE ADGGT+FLDEIG Sbjct: 236 SASPRKDGPLIKVNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDEIG 295 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +LPL+ Q +LLRVLQ EI+R+GGSR IPV++RVIAAT+R+L M+ + +FR DL++RLN Sbjct: 296 ELPLQAQVRLLRVLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFRLN 355 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELE 568 VFPL +PPLR R EDIP L +HF + R + A+ I AL +LM + WPGNVRELE Sbjct: 356 VFPLFIPPLRQRREDIPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAWPGNVRELE 415 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N++ER ++L RG +L L+P +A A + E D+ + + Sbjct: 416 NLVERELILHRGGTLQFD------ALMPAARRGNAPVQREAPGVEEGL-ELDQAISRHLR 468 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +VL T G + G GAA LG+K +TL R+ RLGI Sbjct: 469 RVLDLTGGRIHGRGGAAELLGVKPSTLRWRLDRLGI 504 >UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing protein n=4 Tax=Proteobacteria RepID=A8ZZQ7_DESOH Length = 684 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 190/573 (33%), Positives = 304/573 (53%), Gaps = 28/573 (4%) Query: 100 AELRFIRTHGSRFTSQDCTLFNWLARIITPVLQS-WLNDEEQQVALRLLEKDRDHHRVLV 158 + + +R+T L + L + + V+ + L++E + +L E +D + Sbjct: 129 GAIMIMTDRKNRYTEAHGRLLSGLKKPLQRVMDALILDNETRSPHPKLKEPVKDKNEFFR 188 Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH---C 215 +T + HLDL ++ + + F ++ V + + + H Sbjct: 189 QVTRRLCGHLDLQAGVSQCLQYLSRFMPADAL-FVRQREPEFQSERVLAESYGFFHQQTG 247 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE-SALLIPLTF 274 +P +P + T +T + +R +D L L + G E + +PL Sbjct: 248 TLIPLPIPAD------TRRTPGIRIINRPED-----SSALKLYMPIFGSEICCISMPLIH 296 Query: 275 GNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 GA ++ ++EE+ QL + D +A+ N R + L+ +++E L Sbjct: 297 KERPIGAAVVGLEGRARYTEEHMQLFALLHDPFVLALSNNIRHREVIRLKNLVEEEKKDL 356 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 +E+L II S +E +++ +VA DS VL+ GETG GKE+IA IH S R Sbjct: 357 AEELHCTAP-DTIIGGSLGLEKVMENARLVAGQDSPVLLTGETGVGKEMIANFIHWQSSR 415 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 +D PL+K+NC AIP +L++SELFGH+KGAFTGA GRFE A+GGT+FLDEI +LPL Sbjct: 416 KDGPLIKVNCGAIPDTLVDSELFGHEKGAFTGATRQKLGRFERANGGTIFLDEIAELPLP 475 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 Q ++LRVL + IER+GG+ +IPV++R+IAAT+R+L + V+ +FR DL++RLNVFP+ Sbjct: 476 AQVRMLRVLHNKIIERVGGTESIPVDIRIIAATHRNLEERVKAGRFREDLWFRLNVFPIR 535 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 +PPLR R D+P L+ HF +K +R + + +A+ +L ++ WPGNVRELENVIER Sbjct: 536 IPPLRSRTMDVPALSDHFIEKKSRELKIHPTPPLSPDAMARLTAYSWPGNVRELENVIER 595 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 ++L G L L PT + + + D+ + + +VL Sbjct: 596 ELILNTGGPLTF------QNLSPTPTHE---EPAGHDMKTEDILSLDDLFVRHVKKVLVL 646 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 +NG + GP GAA + +K TL +RM++LGI+ Sbjct: 647 SNGKINGPGGAAEMMKIKPNTLRNRMKKLGIAY 679 >UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax=Oxalobacter formigenes RepID=C3X424_OXAFO Length = 540 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 222/520 (42%), Positives = 302/520 (58%), Gaps = 5/520 (0%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 D D LVD+T+AV++ D+ L A +H FFGL +S+ + Sbjct: 19 DHDFFHFLVDLTDAVIAATDIPCLAEKTADYLHEFFGLDYISLETYEPASFRLNVQAIRF 78 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 P + LL L+ ++ L +R L + P + LA +G + L Sbjct: 79 EQGKRRLYNSFSKPLHATLLGAALRKQEKILFNRNAILSNAAKYPYVARLAGDGLQVLLY 138 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 +PL + G L + F+ E LL I+ R+A+A+ + R T Sbjct: 139 LPLVSAGNLLGTLGVGSFKPCHFTPETMALLNRISARLAVALDVMLSHRKKTAPASVSPN 198 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 E+ + + +I S A++ +LQQ++IVA S++TVL+ GETGTGK +IA+ IH Sbjct: 199 ESPITGDNIEETPPPHHLIGHSVAIQSILQQIEIVASSNATVLLQGETGTGKGLIAQTIH 258 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 LS R+ + +VK+NC AIP+ L+ESELFGH+KGAFTGA+N G FE AD TLFLDEIG Sbjct: 259 NLSDRKARDMVKMNCTAIPSELMESELFGHEKGAFTGALNKRIGHFEQADKSTLFLDEIG 318 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 D+PL+LQPKLL VLQE +I RLG TI V+VR IAATN DL +ED+ FRSDLFYRLN Sbjct: 319 DMPLDLQPKLLSVLQEHQIRRLGSPHTISVDVRCIAATNCDLVAKIEDKTFRSDLFYRLN 378 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VFP+ +PPLR+R EDIP LA+ F +K AR MNR I IP+E L + WPGN+RELEN Sbjct: 379 VFPITVPPLRERAEDIPSLARFFIRKYAREMNRHITGIPSETLALMTRLPWPGNIRELEN 438 Query: 570 VIERAVLL-TRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 V+ERAV+L ++G LNL LL ++S L + P E ++ +V Sbjct: 439 VMERAVILTSQGGVLNL----SPESLLSYTTQNSPLTVHASSQPVVPVPAIPETDKDTLV 494 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 LRET G + G GAA RLG+KRTTLL+R++R GI+ + Sbjct: 495 NALRETGGQIGGKTGAAARLGLKRTTLLARLKRFGINADD 534 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 202/547 (36%), Positives = 306/547 (55%), Gaps = 39/547 (7%) Query: 138 EEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDH 197 Q + + L + R+ V+ + LS ++ +++V R+I L V LG Sbjct: 125 VVQDITEQKLRQSLQTERLQVEAFLSNLSSAFINVPVSEVDRKIEK--ALQKVVNFLGFE 182 Query: 198 RKNE-KFSLWCSDLSASHCACLPRCMPGESVLLTQT---LQTRQPTLTHRADDL-----F 248 R + F+ S L +H LP P + L+ ++ Q + R D+ Sbjct: 183 RSSIWHFTPDRSSLRITHSYALPGVKPPPTELMNLIPIWIEMIQLGESFRVSDVEELSDK 242 Query: 249 LWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRI 307 W+ G +S + IP + G GA+ S + +E Q L+ + + Sbjct: 243 FWREKQYCK--DQGGIKSIMFIPASVGGTIVGAITFVSYSVKKEWPDELTQRLRLLWEVF 300 Query: 308 AIAVGNADA-------WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 A A+ A + L++ L+ EN L +Q+ +II +S+A+ ++LQQ Sbjct: 301 ANALERKRADQKIQNALAEIRQLKDRLEAENVYLRDQIDVEYKHEEIIGKSEAIRNVLQQ 360 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 + VA +DSTVLI GETGTGKE+IARAIH R+ + ++K+NCAA+PA+L+E+ELFGH+ Sbjct: 361 IQQVAPTDSTVLILGETGTGKELIARAIHNAGQRKARAMIKVNCAALPAALIEAELFGHE 420 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGA+TGA+++ GRFE A+G T+FLDEIG+LPLELQ KLLRV+QE + ERLG S+ + + Sbjct: 421 KGAYTGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQEGQFERLGNSKPVKAD 480 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VRVIAATN L Q V++ +FR DL+YRLNVFP+ +PPLRDR EDIPLL ++ ++ Sbjct: 481 VRVIAATNVSLKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQEDIPLLVWAMVEEFSKVF 540 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 + I+ IP + + + + WPGN+REL N++ERA++L+ G +L + + Sbjct: 541 GKTIERIPRKNMEIMERYLWPGNIRELRNLVERAMILSNGGTLVVDI------------- 587 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 L S A P T + ER+ I +L +T + G GAA L MK TTL SR++ Sbjct: 588 ---LDGSAAAANEPMT--MEAAERKHIGFILEKTGWRIRGKGGAAEILDMKPTTLHSRIK 642 Query: 661 RLGISVR 667 +LG+ + Sbjct: 643 KLGVKRK 649 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 210/533 (39%), Positives = 296/533 (55%), Gaps = 39/533 (7%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 + +L I+ + LDL D++ R + F GL ++ + + Sbjct: 31 CRSVQELGLLFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISILNRDTGGFLL--- 87 Query: 208 SDLSASHCACLPRCMPGESVL------LTQTLQTRQPTLTHRADDLFLWQR------DPL 255 + LPR +P + L L +T+++R P + DL +W R D L Sbjct: 88 -----AEAIGLPRGLPPANYLDMIRPILERTVESRDPVVI---TDLAVWARKQGVEEDVL 139 Query: 256 LLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNAD 315 L ++G + +PL F G L + ++ E + ++L IA +A A A Sbjct: 140 ESLRLADGV-GMVSVPLKFDEEAIGTLSIERANTNFGWESDLRILGMIASIVAQA---AR 195 Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 R + +SL+ EN +L E++ +II S M + ++ VA S +TVLI G Sbjct: 196 VRRDAAEQIQSLRAENERLQEEIAHGFRPENIIGSSSTMRSVYYHIEQVANSATTVLIRG 255 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 E+GTGKE++A+A+H+ S RR+KP VK NCAA+P S++ESELFGH+KGAFTGA+ +GRF Sbjct: 256 ESGTGKELVAKALHEKSSRRNKPFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGRF 315 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E A+GGT+FLDEIGD+ L Q KLLRVLQERE ER+G T V+VRVIAAT+R+L +M+ Sbjct: 316 ESANGGTIFLDEIGDISLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEMM 375 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 E FR DL+YRLNVFP+ +PPLR+R DI +LA HF +K A+ M R I + A+ L Sbjct: 376 EAGTFREDLYYRLNVFPIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDML 435 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 +S+ W GNVRELEN IERAVLL +G S+ H L PTL + S SS L Sbjct: 436 VSYHWAGNVRELENCIERAVLLAKGQSIKAH------HLPPTLQKKSRAESSEVATLEDA 489 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 ER+ IV L+ET +A A+ RLG+ R+++ GI V Sbjct: 490 I---QALEREMIVDALKETGSNLA---EASRRLGLTERKAGLRVKKYGIDVSR 536 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 195/543 (35%), Positives = 289/543 (53%), Gaps = 25/543 (4%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAR-EIHHFFGLASVSMVLGDHRK 199 ++ L + +L++++N + + +DL ++ ++ F ++ + + Sbjct: 2 EMFSEQLVQKEKEQAILLELSNRIAAARHREDLWDNLITAQLLELFNSKYYTICMINEDG 61 Query: 200 NEKFSLWCSDL-----SASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDP 254 S+ + P E + L+ P + P Sbjct: 62 VTHSPFLHSEESTIKSRTGETPIISDLHPIEDGVFNLVLEADGPVSFELQKLMRGRLVPP 121 Query: 255 LLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNA 314 + + G + + + G G L L FSE + +L I + + I + N Sbjct: 122 YIYRWFNVGVVEMMAVKICNGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNI 181 Query: 315 DA-------WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 A + + ++ LQ ENH L EQ DI+ S M+ + + VA S Sbjct: 182 LANETIEKQLQEIERFRQKLQNENHYLQEQQGLQNTFADIVGTSAEMQRRITILSRVAPS 241 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 +STVL+ GETGTGKEV ARAIH SPRRD ++K+NCAA+P L+ESELFGH+KG+FTGA Sbjct: 242 ESTVLLLGETGTGKEVFARAIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTGA 301 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 G+FE+AD TLFLDEIG+LPLE Q KLLRVLQE+EIER+GG +I VNVR++AAT Sbjct: 302 TQRRIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAAT 361 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 NR+L + V +FRSDL+YRL+VFP+ +PPLR+R EDIP LA HF Q+ A + R +I Sbjct: 362 NRNLEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPSI 421 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 +A+ LM ++WPGNVRELE+++ER +LLT + ++ ++ Sbjct: 422 SAKAMEGLMHYEWPGNVRELEHLMERTLLLTTTPVI------------AKIDLPGVPVTA 469 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 D E++ I++VL+ NG +AGP GAA +L + TTL SRM++LGI Sbjct: 470 SKDPDSTFILPLDLMEKEYILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKKLGIKKS 529 Query: 668 EVL 670 + Sbjct: 530 HYV 532 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 207/586 (35%), Positives = 312/586 (53%), Gaps = 42/586 (7%) Query: 100 AELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVD 159 + R I T SRFT + F L II + + EQ + R + +L Sbjct: 225 GDTRIISTKKSRFTDEAGNHF--LIGIIRDITER--KRAEQALEDRARRSEIKKDAIL-- 278 Query: 160 ITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLP 219 A ++ DL + + + L VS+ + NE + Sbjct: 279 -KLAGMAQDDLQETFRRITKLAAQTLELERVSIWKFTNSGNEILCEALYIENEGQHRRGD 337 Query: 220 RCMPGESVLLTQTLQTRQPTLTHRA-DDLFLWQRDPLLLLLASNGCESALLIPLTFGNHT 278 R + + L+ ++ L A +D P L NG +S + + + + Sbjct: 338 RLTRADCPNYFKLLEQQKSVLVPNAQEDPATADFGP--GYLKPNGIKSLMDVFVYSAHQP 395 Query: 279 PGALLLAHTSSTL--FSEENCQLLQHIADRIAIAVGN-----------------ADAWRS 319 G L H + ++ E+ + +A+ +++ V + + A + Sbjct: 396 YGILCFEHVGPGIRSWTAEDLEFASSMANVVSLMVESNERKKAEEQIRQANLELSKANKE 455 Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 + L+ L+QEN L +L +++Y SQA+ +L +V+ VA +++TVL+ GE+GT Sbjct: 456 LDTLRNRLEQENMYLRNELDLAFNYQEMVYSSQAISQVLTEVEQVAATNATVLLQGESGT 515 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE++ARAIH +SPR KP++K+NCAAIP LLESELFGH KGAFTGA++ G+FE+AD Sbjct: 516 GKELLARAIHNISPRSGKPMIKVNCAAIPGELLESELFGHKKGAFTGAVSNKVGKFELAD 575 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDEIG+LPLE+QPKLLR LQE EIE +GG+ ++VR+IAATNR L + VE Sbjct: 576 GGTLFLDEIGELPLEMQPKLLRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGD 635 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR DL++R+NVFP+E+PPLR+R EDIP+L +HF K R + I + EA+ QL ++ Sbjct: 636 FREDLYFRINVFPIEVPPLRERKEDIPILVEHFMDKFNRKYGKNISFVTEEAMSQLKQYE 695 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN 619 WPGN+RELEN++ERA +++RG +L + QS+ ++ L + Sbjct: 696 WPGNIRELENLLERATIVSRGETLIIPGFESQSQKSKMPLRNNNLSLTT----------- 744 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 +R I+ VL + + G GAA L M+ +TL RMQ+LGI Sbjct: 745 --VQRNHILHVLDMCDWKITGQGGAAELLDMRPSTLRDRMQKLGIE 788 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 202/634 (31%), Positives = 317/634 (50%), Gaps = 62/634 (9%) Query: 72 SDVTATTEY---QGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIIT 128 +DV+ +Y + E+ +++ + + + FT + + + LA Sbjct: 95 NDVSKDPDYIQVKEEIKSELVAPMIVEDDIIGVISLDSNRLNAFTPEMLEIVSVLANQAG 154 Query: 129 PVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLA 188 + ++ +R LE+ L++I+ V S LD +++ + + L Sbjct: 155 QIFKNLQ-------TIRSLEQRTKIQATLIEISKVVSSTLDQNEVFDSIMVTMEKSLRLE 207 Query: 189 SVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQP---------- 238 S+VL + + + S LS PGE + + ++ +P Sbjct: 208 KGSIVLFNKEEALLRIVAASGLSPEEIEK-GTYQPGEGIT-GKVYESGEPIIIESVASHP 265 Query: 239 TLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEEN-C 297 +R L ++ DP + S L P+ T G + + ++ Sbjct: 266 DFLNRVGYLSHFKHDPHNV--------SLLCAPILSEQTTLGVVNAFIVQNKHTDLKSFL 317 Query: 298 QLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDL 357 LQ +A I+ ++ + + + ++ + +EN QL +L + G +I ++ +ME + Sbjct: 318 DFLQVVASIISQSIKIQNL---VEEAKKEISRENIQLKRELKNKYKFGSLIGKAASMEKM 374 Query: 358 LQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELF 417 +++ +VA S ++VLI GE+GTGKE+IA AIH S R + P VKINCAAIP +LLESELF Sbjct: 375 FEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRSENPFVKINCAAIPENLLESELF 434 Query: 418 GHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTI 477 GH KG+FTGA+ +G+FE+AD GT+FLDEIG++ L LQ KLLRVLQEREIE +G ++ Sbjct: 435 GHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLNLQSKLLRVLQEREIEAIGSTKAK 494 Query: 478 PVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMA 537 V+VR+IAATN +L Q+V +++FR+DLFYRLNV + PPLRDR EDIPLL HF +K Sbjct: 495 KVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINTPPLRDRVEDIPLLMNHFLEKYT 554 Query: 538 RHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH----------- 586 + N++I I EA R L+ + WPGNVRELENVIERAV+L + LN Sbjct: 555 KDNNKSIKGISREASRLLLKYRWPGNVRELENVIERAVVLAQDEILNEEDFSDILSNMEE 614 Query: 587 -----LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND---------EEERQRIVQVLR 632 + V S + +++ L +L D E E + I ++ Sbjct: 615 MPDNTVEVSHSNHVESVSGAEPLDLGSGRLTSGQLDGLDGRAMEIVVSEVESRLIQYAMK 674 Query: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 + A LG+ R TL +++ L I Sbjct: 675 KFR---YTKTRVAKFLGINRNTLDKKIKELNIEY 705 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 71/192 (36%), Gaps = 12/192 (6%) Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACL 218 ++ A+ S D D L+ + + S S++L D +++ ++ ++ Sbjct: 14 EVATAMNSTQDPDGLLELILDRCIQICAVESGSLMLIDEKQSVLDAVTSRGMN--QQLLR 71 Query: 219 PRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHT 278 + + T + L + +DP + + +S L+ P+ + Sbjct: 72 ETKLKIGQGITGMAASTGKAKLVNDVS------KDPDYIQVKEE-IKSELVAPMIVEDDI 124 Query: 279 PGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSM---TDLQESLQQENHQLS 335 G + L F+ E +++ +A++ N RS+ T +Q +L + + +S Sbjct: 125 IGVISLDSNRLNAFTPEMLEIVSVLANQAGQIFKNLQTIRSLEQRTKIQATLIEISKVVS 184 Query: 336 EQLLSNLGIGDI 347 L N I Sbjct: 185 STLDQNEVFDSI 196 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 204/599 (34%), Positives = 299/599 (49%), Gaps = 35/599 (5%) Query: 75 TATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSW 134 T+ + +M ++ G L F+ + + N +A + L Sbjct: 410 TSEMMQREQMESACVLPLVAGDRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDC 469 Query: 135 LNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVL 194 L EE +R L ++ ++ +L++ + F L + + Sbjct: 470 LVQEE----MRRLGEELAAQKIARLEQQKEEVTHELEETSKALDASEERFRDLFDEAPIA 525 Query: 195 GDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDP 254 H + + + + + P +P +T P + Sbjct: 526 YVHEELDSHFIRANRAAIRILGIKPEDVP---HTYGKTFAPDTPD--------AQRRMRE 574 Query: 255 LLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNA 314 + S +++ + ++ + + + + I DR+ Sbjct: 575 AFESIGRGTDTSGVVLEMRRKDNGKPFWIQWWSRPDPSGKYTRTMFLDITDRVL------ 628 Query: 315 DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 M + L+ +N L E++ S +I+ S ++ +L+QVD VA +DSTVLIC Sbjct: 629 -----MEQDKARLEAQNTYLQEEIRSQHNFVEIVGNSPSLLQVLRQVDRVASTDSTVLIC 683 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GETGTGKE+IARAIH SPRR++PLVK+NC AI L+ESELFGH KGAFTGAI GR Sbjct: 684 GETGTGKELIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKGAFTGAIANREGR 743 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 FE+ADGGT+FLDE+G+LP E Q KLLRVLQE+E E +G ++T+ V+VRVIAATNRDL M Sbjct: 744 FELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLETM 803 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 V + +FRSDLFYRLNV PL +PPLR R DIPLL F +K AR + +++ I E + + Sbjct: 804 VREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETMAR 863 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRL---------LPTLNEDSALR 605 L + WPGN+REL+NVIERAV+L+ G+ L + P A Sbjct: 864 LCQYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPERAMIDAAE 923 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 L + ++ ERQ I VL++TN + G GAA L ++ +TL SRMQ+LGI Sbjct: 924 PLSTPLGATSGNALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPSTLRSRMQKLGI 982 Score = 73.7 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 4/257 (1%) Query: 86 DYSRHAVLLG-SSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVAL 144 Y + + + + T T +D A L+ D+ + A Sbjct: 242 SYVGVPMRNASGRTIGHIAVLHTQPMEPTEEDIATLKIFAARGCAELERKQADDRLRQAH 301 Query: 145 RLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFS 204 L + L++IT A+ HL D L +A + + L + Sbjct: 302 AELRRTHIETEALLNITRAIGHHLQRDVLFGALAECLQTAVPTDCFGIALPVAGARIQAH 361 Query: 205 LWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGC 264 + S A P + ++ R+ + ++ + ++ Sbjct: 362 ILNQKNIRSEGAP-PTLHEAKGSAAEWVMKNREWYVAATRREVS-ERFPKTSEMMQREQM 419 Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 ESA ++PL G+ GAL ++ + +A +A+A+ + M L Sbjct: 420 ESACVLPLVAGDRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDCLVQEEMRRLG 479 Query: 325 ESLQQEN-HQLSEQLLS 340 E L + +L +Q Sbjct: 480 EELAAQKIARLEQQKEE 496 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 186/519 (35%), Positives = 278/519 (53%), Gaps = 21/519 (4%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + ++L I + + DL L++ + + + M+L D + F L+ Sbjct: 50 NVLQILFRINQVLTQNADLATLVSIILDGMRQQMRMQRGVMMLYDRHSDAIFIHDSFGLT 109 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDL--FLWQRDPLLLLLASNGCESALL 269 PGE + + ++T +P + R D FL + + + Sbjct: 110 EEE-RGRGIYAPGEGIT-GKVVETGKPIIIPRVIDSPDFLDRTRAHNKGRKQDKL-AFFC 166 Query: 270 IPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +P+ G + + ++ +LL +A IA AV ++ ++ L+ Sbjct: 167 VPIVLAQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYL-IENVDKVR--LE 223 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 EN +L +L +II S+ M+++ V VA + +TVL+ GE+G GKE++A A+ Sbjct: 224 TENRRLKSELKQRFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASAL 283 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H SP D P +K NCAA+P +L ESELFGH++GAFT AI TH+G FE A GGT+FLDE+ Sbjct: 284 HYNSPVADGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEV 343 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+L L Q KLLRVLQER ER+GG++ + V+VR+IAATNR+L +MV + FR DLFYRL Sbjct: 344 GELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRL 403 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVFP+ +PPLRDR D+ LA HF + + + I I T A+ LMS+ WPGNVRELE Sbjct: 404 NVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGNVRELE 463 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 NVIER+V+L ++ L P+L + + + L E + IV Sbjct: 464 NVIERSVILAEEGVIH------GYDLPPSLQTPTETGTGFSGTLEDRVTA---VEYEMIV 514 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + L+ +NG V AAT LG+ R L RM+R G++ + Sbjct: 515 EALKASNGNVG---QAATTLGLTRRMLGLRMERHGLTYK 550 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 204/533 (38%), Positives = 302/533 (56%), Gaps = 27/533 (5%) Query: 149 KDRDHHRVLVDITNAVLSHLDLDDL---IADVAREIHHFFGLASVSMVLGDHRKNEKFSL 205 ++R +L+ ++V S+L ++++ I + + F G ++ + + Sbjct: 35 EERLRFEMLLSEISSVYSNLPVEEVDKTIESGLQRLGEFLGADR-CNLVQFSEDGSRVLV 93 Query: 206 WCSDLSASHCACLPRCMPGES-VLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGC 264 + S + P + + + D + + L + Sbjct: 94 FHSWIHDDAKPDPGFIAPDHNLFPWFAKMFHLGKVVQFSHLDDLPAEAATDITALLALRI 153 Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTL-FSEENCQLLQHIADRIAIAV-------GNADA 316 +S + +P++ G H G L LA S + +E L+ + + A A+ A Sbjct: 154 KSQVSVPISVGGHVFGTLSLATVRSYRSWPDELVPRLRLVGEIFANALVRKQKELQIRKA 213 Query: 317 WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 ++ + +L E L + L E++ N + II QS ++ +L ++ +A +D+TVLI GE Sbjct: 214 FQQIKELNEELAADCTYLREEIDLNYDVHHIIGQSLPLKRVLAKIQQIALTDTTVLILGE 273 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 TGTGKE++ARAIH S RRD+P+VK+NCA++PA+L+ESELFGH+KGAFT A GRFE Sbjct: 274 TGTGKELVARAIHAASQRRDRPMVKVNCASLPANLIESELFGHEKGAFTSAQVRQIGRFE 333 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 AD TLFLDEIG+LPLE Q KLLRVLQE E ERLG SRT+ V+VR++AATNRDL + V Sbjct: 334 FADRNTLFLDEIGELPLESQAKLLRVLQEGEFERLGSSRTLKVDVRIVAATNRDLEEEVR 393 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 +FR DL+YRLN+FP+ +PPLR+R EDIPLL F K R + ++I IP ++ L Sbjct: 394 KGRFRQDLWYRLNIFPITVPPLRERTEDIPLLINLFVNKFGRKLGKSIRRIPAGVMKSLQ 453 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT 616 ++DWPGNVRELENVIERA + T G SL L N++ S + + Sbjct: 454 AYDWPGNVRELENVIERAAINTVGPSLQLLDNLKSSLV--------------TEKTAAPR 499 Query: 617 PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 +E ER I+QVL +TNG + GP+GAA LG+ +TL +RM++LGI +R + Sbjct: 500 LTLEEAERSHILQVLADTNGRIEGPKGAALILGINHSTLRARMRKLGIHIRRI 552 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 190/531 (35%), Positives = 280/531 (52%), Gaps = 23/531 (4%) Query: 147 LEKDRDHHRVLVDITNAVLSHLD----LDDLIADVAREIHHFFGL-ASVSMVLGDHRKNE 201 + + R+L D++ + D L+ ++ +A+ +H G+ VS G+ R Sbjct: 1 MRETVSELRLLFDLSQVIDHSRDISHSLEATLSLMAQHLHMMRGMITLVSPHTGEIRIEV 60 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 L ++ H A GE V + +Q+ QP + ++ Sbjct: 61 AHGLNPAEQRRGHYAL------GEGVT-GRVIQSGQPMVVSNVSASPIFLN-RTRSRDLQ 112 Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSM 320 + + +P+ F + GAL + + + EE+ ++L IA IA A A A +++ Sbjct: 113 KDTIAFICVPIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHA---ARARQNV 169 Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 D + + +EN +L L + L + S AM + +Q+ VA S +TVL+ GE+GTG Sbjct: 170 MDERVAAIEENMRLRNALSAPLRPHGFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTG 229 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE+ A AIH R P + +NCAA+P +L+ESELFGH+KGAFTGA +GRFE+ADG Sbjct: 230 KELAAHAIHSAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELADG 289 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDE+G+L L Q KLLRVLQER ERLGG+ ++ V+VR+I ATNRDL +MVE+ F Sbjct: 290 GTLFLDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEGTF 349 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R DL+YRLNVFP+ +PPLR+R DI LA +F K A R+ I + L + W Sbjct: 350 RRDLYYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDMLQRYTW 409 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT---P 617 PGN+RELENV+ERAVLL + L L ++ + A + + Sbjct: 410 PGNIRELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTLQD 469 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 DE ER I L G + AA LG+ + RM++ GI+ ++ Sbjct: 470 RLDELERACITDALARHKGHMG---HAAQALGLTERVMALRMKKHGINYKD 517 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 186/537 (34%), Positives = 283/537 (52%), Gaps = 35/537 (6%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 + +I+ + S LDL + +V + V + L + Sbjct: 16 TIYEISKILGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQDSGELQLVSAIGLSYEEFQ 75 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHR--ADDLFLWQRDPLLLLLASNGCESALLIPLT 273 + R GE + + QT P + + LFL + P S + +P+ Sbjct: 76 SG--RYRVGEGIT-GKIFQTETPIVVRDLAQEPLFLARTSPRQSQDGE--VISFVGVPIK 130 Query: 274 FGNHTPGALLLAHTSSTLFSEEN--CQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 G L + + + +LL +A+ I V +RS+ ++ LQ+E Sbjct: 131 AAREMLGVLCVFRDGQSPSRSVDHEVRLLTMVANLIGQTV---RLYRSVAAERQQLQEEK 187 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 QLS QL + ++I S+AM+++ QV A S ST+L+ GE+GTGKEVIARAIH L Sbjct: 188 RQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYL 247 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 SPR+D P +K+NCAA+ +LLESELFGH+KGAFTGA +GRFE+A GGTLFLDEIG++ Sbjct: 248 SPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEI 307 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 Q KLLRVLQERE ER+GGSR+I V+VR++ ATNRDL + V +FR+DL+YR+NV Sbjct: 308 SPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVV 367 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 + +PPLR+R EDIP L +HF +K RA+ A+ +A++ +M+ WPGNVRELEN + Sbjct: 368 SIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNVRELENCV 427 Query: 572 ERAVLLTRGNSLN-LHLNVRQSRLLPTLNEDSALRSSMAQLL------------------ 612 ER + RG+ + +H + +Q++ L + + + + + Sbjct: 428 ERTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAIFAEWDGQ 487 Query: 613 -HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 T ER+R++ + + + A AA L + + +Q+ I V++ Sbjct: 488 GQATGAAPPTSERERLIWAMEQCGWVQA---KAARALNISPRQMGYALQKFNIEVKK 541 >UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Bacteria RepID=A4SC79_PROVI Length = 704 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 202/594 (34%), Positives = 306/594 (51%), Gaps = 16/594 (2%) Query: 80 YQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEE 139 Y M +L G + L F+ ++ + L + I+ + + L Sbjct: 118 YDAGMRQIVLSPLLSGGEVIGFLNFVSRDEKAWSEAERDLLASVTSPISMAVSNAL---- 173 Query: 140 QQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRK 199 A L + + + + NA+++ D ++ V +I + + + + Sbjct: 174 ---AYDELRQREAETAMQLAVNNALMTIRDRGQMLLAVCEQISKLLPVVYLGIRVFGDDG 230 Query: 200 NEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTH---RADDLFL---WQRD 253 + + + ++ + + H + D FL + Sbjct: 231 TPRLADNFMHDEEGRFISVSTEERLSHTGDEDAMRESRELIAHPGVYSGDRFLQLARESR 290 Query: 254 PLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGN 313 + + G + + L + L++ +S F E L I ++++A+ N Sbjct: 291 LVAEVQERYGICTIISAQLWDAPGSHAGLII-SSSRRPFEEAELATLNLIIPQLSLALQN 349 Query: 314 ADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 A+ + L++ L+ E L E++ + +II S + +L++V VA +D+TVLI Sbjct: 350 LLAFDEIDTLRQRLEGERTYLKEEIRAVHNFEEIIGTSAPLAAVLRRVSQVAPTDATVLI 409 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 GETGTGKE+ ARAIH LSPR ++ LV++NCAA+PA+L+ESELFGH+KG+FTGA G Sbjct: 410 QGETGTGKELFARAIHTLSPRNERVLVRVNCAALPATLIESELFGHEKGSFTGATGRRIG 469 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 +FE+ADGGT+FLDEIG+LPLELQ K+LRVLQEREIERLGG + IPVNVRVIAA+NRDL + Sbjct: 470 KFELADGGTIFLDEIGELPLELQSKMLRVLQEREIERLGGGKLIPVNVRVIAASNRDLQK 529 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 V +FR+DLF+RLN FP+ LPPLR R DI +LA HF QK AR R I ++ Sbjct: 530 EVAAGRFRADLFFRLNAFPIFLPPLRARTGDISMLALHFAQKFAREFGRPNRPIRERDMQ 589 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH 613 +L W GN+REL + IE+AV+LT G L+ + L S + Q + Sbjct: 590 ELKERQWKGNIRELAHAIEQAVILTDGPVLDFSTILTPRSR--HLAALSPSPAKGIQSMA 647 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 E E ER I+ L + G V+G GAA L + TL +R+++LG+ R Sbjct: 648 IFEEEVREMERTLILDALDQAKGRVSGKGGAAELLSIHPKTLYTRIEKLGLRKR 701 Score = 65.2 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 11/218 (5%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + R+ I++AV S D +L + ++ F S +V D + S++ Sbjct: 8 ESRRLTQYISDAVGSVRDPQELFHTLTDKLRLMFKFDSAVIVTIDKDR-RYVSVFFEMFL 66 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRA-DDLFLWQRD--PLLLLLASNGCESAL 268 + + T+ T D+L D P+L + G + Sbjct: 67 FPIAQGFANEKRLLAGSWFEPFLTKPAVATVSIGDELRRHGNDSYPILKIFYDAGMRQIV 126 Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 L PL G G L +SE LL + I++AV NA A+ L+ Sbjct: 127 LSPLLSGGEVIGFLNFVSRDEKAWSEAERDLLASVTSPISMAVSNALAYDE-------LR 179 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAK 366 Q + + QL N + I + Q + + +Q+ + Sbjct: 180 QREAETAMQLAVNNALMTIRDRGQMLLAVCEQISKLLP 217 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 189/534 (35%), Positives = 279/534 (52%), Gaps = 23/534 (4%) Query: 147 LEKDRDHHRV--LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFS 204 + D H + L I+ + S LD+ + + +H + ++VL + Sbjct: 6 IRPDTAHLELQALYQISQLIGSALDISKTLNETLGVLHETLRMERATLVLEECDSGRLTI 65 Query: 205 LWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGC 264 + LS + A E ++ + + P + L+ G Sbjct: 66 VASYGLSPAEIAR--GIYRPEEGVIGRIFASAYPFVVPDVHREPLFLNRTRARTNLPKGE 123 Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDL 323 S + +P+ + G L + S EE+ + L +A I + + R+ Sbjct: 124 ISFIGVPVMLAENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFL---NLQRTFASS 180 Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Q+ L++EN QL +L +II Q + ++++ + VA S +T L+ GE+GTGKE+ Sbjct: 181 QQVLREENSQLRRKLQDRFNRYNIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKEL 240 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARAIHQ PR +P +K+NCAA+P +LLESEL GH+KGAFTGA+ +GRFE+ADGGTL Sbjct: 241 VARAIHQAGPRAGEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTL 300 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG+LPL LQ KLLRVLQER ERLGGSRTI V+VR+IAATNR L VE+ FR+D Sbjct: 301 FLDEIGELPLALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRAD 360 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRLNV P+ LPPLR+R EDIPLL HF ++ RH R + +R+L + WPGN Sbjct: 361 LYYRLNVVPVVLPPLRERREDIPLLLDHFLRESNRHNRRRVK-FAAAVIRRLNEYSWPGN 419 Query: 564 VRELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND-- 620 VREL+N++ER V++ G +NL L + P + + P D Sbjct: 420 VRELQNLVERLVIMVDGEVVNLDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQG 479 Query: 621 --------EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 E E++ ++ LR + AA LG+ + R+++ I + Sbjct: 480 MAAGRSLWEMEKEEVLAALRRHGWV---QTRAARDLGITPRQMGYRIRKYAIEI 530 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 204/527 (38%), Positives = 284/527 (53%), Gaps = 26/527 (4%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 I+ + S DLD + + + GL S++L ++ +E + LS Sbjct: 14 FFAISRELASSPDLDGALKRILEIMDEKLGLHRSSILLLENDSDELRTEIAHGLSEEEIR 73 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRAD-DLFLWQRDPLLLLLASNGCESALLIPLTFG 275 R GE + L+T P + + R AS G + L +PLTF Sbjct: 74 K-GRFKEGEGIT-GAVLKTGDPIVVPDISREPRFLNRTGSRSERASRGKLAFLAVPLTFQ 131 Query: 276 NHTPGALLLAHTSSTL--FSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQ 333 G L T +E ++L I+ IA AV + + ++ L++ + Sbjct: 132 ARKVGVLSADCTIEPGSGNLDEELRVLTTISSIIAQAV---ILRKQFVEERKKLEERALR 188 Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L L I I +S+ M+ + + V +VAKS +TVLI GE+GTGKEV+A+AIH SP Sbjct: 189 LEHHLKDRYSIEGWIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAIHFNSP 248 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 R +P V+INCAAIP SLLESELFGH+KGAFTGA + G+FE A GTLFLDE+G++ Sbjct: 249 RNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEISP 308 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 +Q KLLRVLQER +ER+GG++TIPV+VR+IAATNR+L + + QFR DL+YRLNV P+ Sbjct: 309 AVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPI 368 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 LPPLR R EDIPLL HF + + R++ I EA+ L+ DWPGNVRELEN +ER Sbjct: 369 YLPPLRQRKEDIPLLVNHFLGRFNQENGRSM-TISPEAISALIEHDWPGNVRELENTMER 427 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPT-------LNEDSALRSSMAQLLHPTTPEN------- 619 V++T+ +S+++ R L P+ + E A R S + E+ Sbjct: 428 LVVMTQADSIDITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEAV 487 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 E ER +I+ VL T I AA LG+ L RM + GI Sbjct: 488 SELERAKILDVLDRTGWI---KTRAAALLGITPRQLGYRMMKYGIDP 531 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 178/513 (34%), Positives = 272/513 (53%), Gaps = 19/513 (3%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L I+ + + DL D ++ V + + + L D R F L+ Sbjct: 33 ILYKISQIITGNADLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEEE- 91 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 GE + + ++T + + R + + + + +P+ Sbjct: 92 KKRGIYAVGEGIT-GKVVETGKAIVARRLQEHPDFLG-RTRVSRNGKAKAAFFCVPIMRA 149 Query: 276 NHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 G + + +++ +LL IA IA V ++ ++ L+ EN +L Sbjct: 150 QKVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYL-IENIERVR--LENENRRL 206 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 L +II S+ M+++ + + VA + +TVLI GE+G GKE++A AIH SP Sbjct: 207 KHALKERFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPN 266 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 + LV NCA +P +L ESELFGH+KG+FTGA+ H+G FE ADGGT+FLDE+G+L Sbjct: 267 AEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPT 326 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 +Q KL+RVLQ R ER+GGS+ + V+VR+IAATNR+L +MVE FR DL+YRLNVFP+ Sbjct: 327 VQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPIT 386 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 +PPLR+R D+ LA HF +R + + I T AL LMS+ WPGNVRELENV+ERA Sbjct: 387 VPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELENVMERA 446 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 V+L+ + ++ + L P+L ++ L + E + IV+ L+ + Sbjct: 447 VILSDDDVIHSY------NLPPSLQTSKESGTAFGLTLE---EKIKAVECEMIVEALKNS 497 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 +G + AA LG+ R L RM+R GIS + Sbjct: 498 SGHIG---EAAKELGLARRMLGVRMERYGISYK 527 >UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis family n=4 Tax=Anaeromyxobacter RepID=Q2IQU1_ANADE Length = 562 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 197/524 (37%), Positives = 290/524 (55%), Gaps = 12/524 (2%) Query: 142 VALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE 201 + L ++ +D H R++ + VLS +DL ++ R + FG V++ Sbjct: 41 IGLPVVGQDDVHRRIVEEAIELVLSTVDLQAVLERTGRLLRRHFGETRVAINRLSAEDPT 100 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDL-FLWQRDPLLLLLA 260 + + + P + L R P + W+ +PLL A Sbjct: 101 RAEVVLVSDPRQPSPEVGTSFPLAGSAAGEALAKRLPCVVDPLRPREPRWREEPLL---A 157 Query: 261 SNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSM 320 + G S + PL F N G L +AH + + ++ + +A +AIA+ N+ + Sbjct: 158 AYGYGSLVSFPLVFENELLGTLDIAHPPAEGLLDCCFEVARQVAHLVAIALHNSLMVEEV 217 Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 L L +EN L E++ + +S+ M ++++V +VA S +TVL+ GETGTG Sbjct: 218 QRLNRLLGRENALLKEEIRQIKRDSRYVAESEGMRAVVERVRLVAPSTTTVLVRGETGTG 277 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE +AR +H+ SPR + P V N AIP L+ESELFGH+KGAFTGA GRFE ADG Sbjct: 278 KEGLARMVHEFSPRFNAPFVAANLGAIPEGLIESELFGHEKGAFTGATRRRAGRFEQADG 337 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDE+GD P +Q +LLRVLQER +ER+GG+ + V+VRVIAATNR+L +MV F Sbjct: 338 GTLFLDEVGDAPPSVQVRLLRVLQERVVERVGGTEPVKVDVRVIAATNRNLEEMVARGTF 397 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R+DL+YRL VFP+ELPPLR+R ED+ L +F K A M+R + + R L ++ W Sbjct: 398 RADLYYRLAVFPIELPPLRERREDVRPLGTYFLAKQAALMHRRPPRVGEDVWRALEAYGW 457 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 PGNVRELEN ++RA++L+ G L+L LPT + ++ ++ A P +D Sbjct: 458 PGNVRELENFLQRALILSPGQDLSLP-------ALPTSSALASPAAAAAAEPAPPGRFDD 510 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E R+ I + L G V GP GAA LG++ TTL +M++ G+ Sbjct: 511 EV-RELIERALEHAGGRVYGPGGAAALLGLRPTTLQGKMKKYGV 553 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 183/559 (32%), Positives = 285/559 (50%), Gaps = 26/559 (4%) Query: 113 TSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDIT---NAVLSHLD 169 + + +L S+L+D+ LL+ R +L +I + + + Sbjct: 502 SMGQEKKAKGAMQKSAELLDSFLHDQVPDNLRFLLKDLRTDKNLLEEIMKLGQELATIRN 561 Query: 170 LDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLL 229 DL+ + ++ G ++ L + + + + + ++ Sbjct: 562 DRDLVRHILATVNRITGAERGAVFLVNKETGKPAVVLRAARNIMEQDISRPEFQSSMKMV 621 Query: 230 TQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHT-S 288 + T + L + S + +P+ F G L + + Sbjct: 622 REAAFTGRARFRLTEAPRQSHP-------LENKVVHSCICVPMKFRETVLGVLYVDNRIF 674 Query: 289 STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDII 348 + E + ++L + + AIA+ NA L L++E L EQ + + Sbjct: 675 PSALKESDIRILDFFSSQAAIALDNARIHEQNRALIRKLEEEKRYLEEQQSEFQPPVEFV 734 Query: 349 YQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIP 408 + A+ +L V +A +DSTVLI GETG GKE+I+ AIH+ S R KP +++NC+ P Sbjct: 735 GECAAVRKVLNDVKKIAATDSTVLILGETGVGKELISTAIHERSSRAGKPFIRVNCSMFP 794 Query: 409 ASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREI 468 L+ SELFGH+KGAFTGA GRFE+ADGGTLFLDEIGD+ E+Q +LLRVLQ +E Sbjct: 795 EGLIASELFGHEKGAFTGADKRRLGRFELADGGTLFLDEIGDISHEVQVRLLRVLQNKEF 854 Query: 469 ERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLL 528 ER+GG T+ + R++AATNRDL + V+ +FR DL+YRLNV L++PPLR+R EDIPLL Sbjct: 855 ERVGGRSTLRSDFRLLAATNRDLREDVKTGKFREDLYYRLNVLSLKIPPLRERKEDIPLL 914 Query: 529 AKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN 588 +F + A+++ + A+ E L +L+++DWPGNVRELENVIER+ +L+ G L + Sbjct: 915 VDYFLDRHAKNLGKPRGAVTPEDLDKLVAYDWPGNVRELENVIERSAILSSGARLEIPDL 974 Query: 589 VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRL 648 + S + L +E ER+ I+ L++T G V GP GAA L Sbjct: 975 FQ---------------SGASFALDREALSLEENERRHILWALKKTGGKVRGPGGAAELL 1019 Query: 649 GMKRTTLLSRMQRLGISVR 667 + TL SR+++LGI + Sbjct: 1020 EINHNTLFSRIKKLGIKRK 1038 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 179/528 (33%), Positives = 280/528 (53%), Gaps = 19/528 (3%) Query: 143 ALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEK 202 A L +D L +IT + S DL +A + + GL + ++ + + + Sbjct: 22 ATEPLPRDYADLACLYEITRELASSADLRVCLAKILAILSRQKGLNNGAVTIINPLTGQI 81 Query: 203 FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 + ++ GE + + + + P + R + L+ Sbjct: 82 ETEVAHGITV-EARKKGTYRIGEGIT-GRVVASGAPIVVPRISEEPLFLDRTSARRSRGE 139 Query: 263 GCESALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 S + +P+ G T GAL + E++ + L ++ +A V + + Sbjct: 140 EL-SFICVPIRRGPDTIGALSVDREYREGEEFEQDLRFLTILSGLVAQTVKRV---QLVN 195 Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 Q+ L+QEN QL +L + I+ S M+++L+ + VA S++TVL+ GE+GTGK Sbjct: 196 QEQQRLEQENSQLRRELSEKYRVSSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGK 255 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 ++ARA+H S R P + +NC+A+P +LLESELFGH++GAFTGA T +GRFE+A+GG Sbjct: 256 SMVARAVHHNSKRAAGPFITVNCSALPETLLESELFGHERGAFTGAHETRKGRFELAEGG 315 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDEIG+L +Q KLL V+Q+RE +R+GGSR + +VR+I ATN+DL + V + FR Sbjct: 316 TLFLDEIGELSTAVQVKLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFR 375 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL+YRLNVFP+ LPPLR+R DI LLA+ F +K A ++ I I T A+ L + WP Sbjct: 376 EDLYYRLNVFPIYLPPLRERRTDILLLAEFFLEKFASENDKNIRRISTPAIDLLTQYHWP 435 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GNVREL+N +ERAVL+ +++ + L PTL +LR T + Sbjct: 436 GNVRELQNCLERAVLICDEDTI------KSYHLPPTLQSSDSLREVSPSSF---TAAVES 486 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 ER+ I+ L++T+G AA L + ++++ I R Sbjct: 487 FERELIIDALKKTDG---NQTRAAALLETSLRIINYKIKKYAIEPRRY 531 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 192/562 (34%), Positives = 300/562 (53%), Gaps = 32/562 (5%) Query: 113 TSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDD 172 + + + I + + + +E+ + + + +++ ++ + D Sbjct: 158 DEINIPILQGICSQIAIAMGNIMANED-------IFRRQAEQELMLGFSSDITGVKTKSD 210 Query: 173 LIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQ- 231 L ++ + F + L D + + + Sbjct: 211 LEIVTSKTLERLFNTRISVLYLLDTDQVTLRPYLYDRQFFQETEVAENEAFYSLNINEEH 270 Query: 232 ---TLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS 288 ++ QP L ++L + L + +G L G G + + Sbjct: 271 VKLVFESSQPVLLDIDENLEA-KCLKLSIQRELSGFNRVYASALRLGEQKLGMVWMLG-- 327 Query: 289 STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDII 348 + + +LQ I +I+ AV N A + LQ+ L+ ENH L +QL N +I+ Sbjct: 328 ----DQVSGPILQGICAQISTAVSNVLANEQILRLQKQLEDENHYLKQQL--NKDFEEIV 381 Query: 349 YQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIP 408 +AM+ + + + +VA+S++TVL+ GETGTGKE+IA+A+H S R+DK ++K+NCAA+P Sbjct: 382 GGGEAMQQVYRLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLMIKVNCAAMP 441 Query: 409 ASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREI 468 ASL+ESELFGH++GAFTGA+ G+FE+A+ TLFLDE+G++P+E Q KLLRVLQE+E+ Sbjct: 442 ASLIESELFGHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEKEM 501 Query: 469 ERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLL 528 ER+GG TI +NVR+IAATNRDL V+ +FRSDL+YRLNVFP+ LPPLRDR EDI L Sbjct: 502 ERVGGKTTIKLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIESL 561 Query: 529 AKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN 588 A F K ++ + + + ALRQL ++ WPGNVRELE++IER+V+L + Sbjct: 562 AGFFLAKFSKSIGKKTVKLSANALRQLQAYLWPGNVRELEHLIERSVILATDPMI----- 616 Query: 589 VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRL 648 + LP + +M L ++ ER I+QVLR G ++G GAA L Sbjct: 617 --REFFLPQATGATTDEHTMQSDL-----TLEQVERMHIIQVLRRCGGKISGIGGAAEIL 669 Query: 649 GMKRTTLLSRMQRLGISVREVL 670 G+ T+ S+M++LGI+ E Sbjct: 670 GIPGNTIHSKMRKLGITKAEYF 691 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 162/340 (47%), Positives = 222/340 (65%), Gaps = 5/340 (1%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 + L++EN L +QL + + S ++ + + ++ VA +DSTVLI GE+GTGKE+I Sbjct: 126 KRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELI 185 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH SPRRD P+V INC AIP LLESELFGH+KGAFTGA T GRFE+A+GGT+F Sbjct: 186 ARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIF 245 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGD+ LQ KLLRV+QE+ ER+G +RT+ V++R++AATN+DL + VE ++FR DL Sbjct: 246 LDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDL 305 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNV P+E+PPLRDR DIPLL F K+A R + I A+ LM WPGNV Sbjct: 306 YYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNV 365 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 RELENV+ER ++L+ G++++ L + ++ L+ + +E E+ Sbjct: 366 RELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDH--AVEEYEK 423 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 IVQ L E N + AA L + RTTL+ +M+R I Sbjct: 424 NLIVQALEEANWV---KTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 177/564 (31%), Positives = 279/564 (49%), Gaps = 48/564 (8%) Query: 138 EEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDH 197 E ++ E+ + +L +I+ A+++ D++ ++ V + G+ + + + Sbjct: 2 ETVNQNIKTNEEQPNELTLLAEISRALINEEDINKILRLVLLIMSEHMGMLRGVITIFNR 61 Query: 198 RKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLL 257 E LS A R GE + + Q ++T +P + L+ Sbjct: 62 DSGEIVIKESFGLSPEEQAR-GRYKLGEGI-IGQVVETGKPVVVPSIAKEPLFLDKTRSR 119 Query: 258 LLASNGCESALLIPLTFGNHTPGALLLAHT----------------------SSTLFSEE 295 + +P+ G G L Sbjct: 120 EKDEKNDLCFVCVPIRAGQEVIGTLSADRKVSSKNPRVALTQTQGGKQTRGCGENGMFNS 179 Query: 296 NCQLLQHIADRIAIAVGNADAWRS--MTDLQESLQQENHQLSEQ----------LLSNLG 343 + LL IA I+ AV + + +LQ + + Sbjct: 180 DVNLLSIIAAMISQAVRLRQVAHEENLYHWKSNLQISAPEGKSHNSDVFDNPNSIEVGEQ 239 Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 +II +++M + + +D +A +++TVLI GE+G GKE++A AIH S R P +K N Sbjct: 240 PANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFN 299 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAA+P S++ESELFGH++GAFTGA T +GRFE+A+ GT+FLDE+G+L L +Q KLLR+L Sbjct: 300 CAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRIL 359 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QE+E ER+GG++TI +VR+IAATNR+L + +++ +FR DLFYRLN+FP+ +PPLR+R Sbjct: 360 QEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKS 419 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 DI LLA +F +K + + + I T A+ LM + WPGNVRELEN +ERAV+L+ + Sbjct: 420 DILLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILSDDGVI 479 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 + L PTL SS P D E + IV+ L+ T G ++ Sbjct: 480 H------GYHLPPTLQ---TAESSGTPCAGPLQQRLDALEYELIVEALKNTKGNMS---K 527 Query: 644 AATRLGMKRTTLLSRMQRLGISVR 667 AA LG+ + R+++ I R Sbjct: 528 AAMELGLTDRVMGLRVKKFDIDFR 551 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 177/516 (34%), Positives = 266/516 (51%), Gaps = 30/516 (5%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 R LV+I + + D + ++ V ++L + E F++ Sbjct: 4 SPTRTSLDALVEIAQTINTLRDPEAVLEKVLEIAMETLEAERGFILLKAPQHPEGFAI-- 61 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 L + + ++ + L+ +P L + A +R + +S Sbjct: 62 RSQRNFTDQQLGELVRISTSVVHEVLRRGEPVLVYEAQQ---DERYGKAESIVLQRIQSI 118 Query: 268 LLIPLTFGNHTPGALLLAH-TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 +PL GA+ L + F+ +N L+ A + AIA+ NA + ++ Sbjct: 119 ACVPLRIKERLIGAIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLY-------QA 171 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L++EN +L ++ G +I+ QS AM ++ + V +D+TVLI GE+GTGKE+IAR Sbjct: 172 LREENRRLRSEIQRLHGFDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIAR 231 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH S R+DKP V + C ++P LLESELFG+ KGAFTGA++ +G FE+ADGGT+FLD Sbjct: 232 AIHYNSERKDKPFVVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLD 291 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 E+GDL +Q LLRVLQE EI R+G ++ V+VRVI+ATN+ L ++V+ +FR DL+Y Sbjct: 292 EVGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYY 351 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLN + +PPLR R DIPLLA HF K A I EAL L + WPGNVRE Sbjct: 352 RLNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVRE 411 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 LEN IERAV+L RG + + LP + + E ER+ Sbjct: 412 LENTIERAVVLARGELIT-----PEDLRLPDTDGADPFEPDLP---------LKEVERRV 457 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 +++ L+ G ++ A LG+ R L +++ Sbjct: 458 VLRTLKRHGGNIS---ETARVLGVSRRWLHYKLKEW 490 >UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P9_DESAA Length = 514 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 175/515 (33%), Positives = 279/515 (54%), Gaps = 13/515 (2%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 D ++ + T + ++++ + D + +F SV + D ++ +D Sbjct: 2 DENKFFREATLRICGSIEIEKALFDCLDYLKNFIPAESVYLHFIDLKEKTGVVYAMADGG 61 Query: 212 ASHCACLPRCMPGESV-LLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 + P L+ + L RAD L + +L + +G S +++ Sbjct: 62 GGRQLNIRFDYPAPVWRLIGDGSDLPEEVLLDRADKGALGKH--MLKIAGLSGIRSLMMM 119 Query: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 L+ G+ G + + F E+ L+ + A+A+ N+ + + +L+ L + Sbjct: 120 RLSLGSKEVGVIAFEARGESRFRREHLHRLRLLQSPFAVAISNSRRYIELLELKNLLADD 179 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 N L ++LLS +II ++ ++QQV+ VA S VL+ GETG GKEVIA AIH+ Sbjct: 180 NKYLQQELLSQKS-DEIIGADFGLKHVMQQVNKVAPLSSPVLLMGETGVGKEVIANAIHK 238 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 S RR++P +K+NC AI +L++SELFGH +GAFTGA RGRFE A G++FLDEIG+ Sbjct: 239 YSSRRNEPFIKVNCGAISETLIDSELFGHVRGAFTGAFENKRGRFERAHQGSIFLDEIGE 298 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 LP Q +LLRVLQE E E +G ++TI V+ RVIAATNR+L MV + FR DL++RL V Sbjct: 299 LPKAAQLRLLRVLQEMEFEPVGSAKTIKVDARVIAATNRNLEDMVAEGSFRKDLYFRLKV 358 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELEN 569 FP+ +PPLR+R DIP L ++F K R M ++ A+++L +++WPGNVRELEN Sbjct: 359 FPIYIPPLRERACDIPALTQYFMHKKYREMGFAEYPSLAPGAVKRLEAYEWPGNVRELEN 418 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 +ERA++++ G +L+ + + + + DE I++ Sbjct: 419 AVERAMIVSGGKTLHFDDS--------GFEKPRCVPEEAPHDAEDSPAMLDEVISSHIIK 470 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +L T G + G GAA +G+ TL ++M++LGI Sbjct: 471 MLHRTKGKINGEDGAARAMGVNPATLRNKMRKLGI 505 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 203/522 (38%), Positives = 292/522 (55%), Gaps = 42/522 (8%) Query: 158 VDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCAC 217 VD A+ S + +DL A + + + L ++S+++G N S WC Sbjct: 26 VDWRGAIGSIRNENDLFAFIHTVLRPY--LHTISVLIGIADGNGTISRWCHKTEGLTLLP 83 Query: 218 LPRCMPGESVL--LTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 LP+ + + ++ L+ P +R L L ++G L++PL Sbjct: 84 LPQKVSEHFMQDNISGVLEMYAPD-----------RRSALQTTLFNSGVREMLILPLRNH 132 Query: 276 NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH--- 332 ++ G L L F + ++ A ++ A + L + LQ+E+ Sbjct: 133 TNSFGFLCLLAKHHNTFPKSLQISVKRYAGLLSAA---TLKLMLLDALPQWLQEEDMGGD 189 Query: 333 ----QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 L LL + I A+ ++QQV VA +D+TVL+ GETGTGKE+ A AI Sbjct: 190 GAELLLYNDLLPAKLVSGI-----ALRPVIQQVRQVAPTDATVLLTGETGTGKELFAEAI 244 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H S RR K VKINCAA+P L+ESELFGH+KGAFTGAI+ G+FE+A+GGTLFLDEI Sbjct: 245 HLSSMRRQKAFVKINCAALPPQLIESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEI 304 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+LPL++Q KLLRV+QE+EIER+GG+ TIPVNVR+IAATNR L + V +FR DL+YRL Sbjct: 305 GELPLDMQAKLLRVIQEKEIERIGGTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRL 364 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 VFP+ LP LR+R EDIPLL +HF + A + I I + ++ LM + WPGN+RE+E Sbjct: 365 YVFPIHLPALRERREDIPLLLQHFARNAAMKYGKPIRHIASGSVLALMDYTWPGNIREME 424 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 +++ERAV+ + + + + + L N S L E ERQ I+ Sbjct: 425 HMVERAVISSDEPQITIAVPGNRKALEADGNSLSPL------------LTLAETERQTII 472 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 + LR +NG + GP+GAA L +K TTL +RM++LGI V+ Sbjct: 473 RALRYSNGRIRGPQGAADLLDIKPTTLEARMKKLGIVKEHVV 514 >UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLD5_DESAA Length = 1035 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 181/575 (31%), Positives = 295/575 (51%), Gaps = 25/575 (4%) Query: 92 VLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDR 151 + L S + R++R G T +++ + + + + D+ + + R + Sbjct: 482 MSLIRSRLETARYLRKIGDPGAGDKLT--TQVSQSLASMDEKLVPDDLRHMVSRD-GNSK 538 Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 R ++++ ++ D +L+ + + G ++ + + + K L Sbjct: 539 KLLREILELGQELVKIRDYHELVQRIISTGNRVTGAERGAIFMSEKGNSGKEELRLKASR 598 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 + +++ + + + + +S + +P Sbjct: 599 NLTSDHVANPS------FVSSMKMIEMVAASGRGLIAGVESTDTEGYSSEGAIQSKICVP 652 Query: 272 LTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 L + G L + ++ F EE+ +L + + AIA+ NA A+ + L +E Sbjct: 653 LCLHDQVVGVLYHDNRLLASAFREEDLDVLSYFSALAAIALDNARAYDQIRRWNIKLSRE 712 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 E LS L +I+ S A+ ++L +++ VA +++TVLI GETG GKE++ARAI + Sbjct: 713 KQYYEEAHLSYLQFDEIVGHSPAINEVLSKIEQVANTETTVLITGETGVGKELVARAIQK 772 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 S R +P + + +A+P L+ SEL GH+KGAFTGA + GR E+ADGGTLFLDEIGD Sbjct: 773 HSSRAQQPFIGVQLSALPKDLMASELLGHEKGAFTGATHRQAGRLELADGGTLFLDEIGD 832 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 + ++Q +LLRVLQ R+ ER+GG +T+ + R+IAATNR+L +V D +FR+DL+YRLNV Sbjct: 833 ISHDIQIRLLRVLQTRQFERVGGMKTLSSDFRLIAATNRELESLVRDGRFRADLYYRLNV 892 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENV 570 FP+ +PPLRDR EDIPLLA HF + A +N+ + I + L +DWPGNVREL+NV Sbjct: 893 FPIYVPPLRDRREDIPLLAMHFLKLHAAKLNKQVMRISDREMDMLKEYDWPGNVRELKNV 952 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 +ER V+L+ + ++ P D+A E ER I+++ Sbjct: 953 VERGVILSTNRDFRMP-ELQSGDCPPLTVGDTA--------------TLAENERSHILRI 997 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 L+ T VAG GAA L + +TL RM +LGI Sbjct: 998 LKRTGWKVAGASGAAKILDIPPSTLSFRMNKLGIK 1032 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 180/385 (46%), Positives = 247/385 (64%), Gaps = 17/385 (4%) Query: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNAD--AWRSMTDLQESLQQENHQLSEQLL 339 L S + + + + LQ +++ A A + L++ LQ EN L E++ Sbjct: 115 FQLQEVLSRIHTHLSLRRLQQSMEQLVAERTQALTKALAEVERLKDQLQAENTYLREEIK 174 Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 +I+ QS+A + +L+ V+ VA +++TVLI GE+GTGKE++ARA+H LS R++KPL Sbjct: 175 QTKNFDEIVTQSKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPL 234 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 VKINCAA+PA+L+ESELFGH+KGAFTGA GRFE+ADGGT+FLDEIG++PL+LQ KL Sbjct: 235 VKINCAALPATLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKL 294 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LRVLQE E ER+G ++T+ VNVRVIAATNRDL + +FR DL+YRL+VFP+ PLR Sbjct: 295 LRVLQEGEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLR 354 Query: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 R EDIPLL +HF K M + ID IP L L + WPGN+RELEN+++RA++++ Sbjct: 355 TRKEDIPLLVRHFCAKHGADMGKTIDTIPATVLDTLTDYHWPGNIRELENLVQRALIMSP 414 Query: 580 GNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVA 639 G +L + +R+ L T +E ER I+ VL T+ V+ Sbjct: 415 GRTLVIGDWLRKKPLA---------------NQKATLMTMEEAERAHIISVLELTHWKVS 459 Query: 640 GPRGAATRLGMKRTTLLSRMQRLGI 664 G GAA L M TTL SRM++LGI Sbjct: 460 GDNGAARLLDMIPTTLDSRMKKLGI 484 >UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5C3_DESRD Length = 521 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 189/521 (36%), Positives = 285/521 (54%), Gaps = 11/521 (2%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLAS--VSMVLGDHRKNEKFSLWCSDL 210 H + + S LD+D + + F S +S+ L D + + ++ Sbjct: 5 HESFFREAVLRICSSLDIDKALERCLEYVKQFIPADSMHLSVYLPDVQMLQFVAVAGEGY 64 Query: 211 SASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 ++ + +P + + P + D + + +L L + S +++ Sbjct: 65 EVTNADAI--SVPAIDWEAPENQRPGMPFVHVVNDPANEPEVETVLHQLNLSSDFSVMVM 122 Query: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 L + G + + + ++EE+ +L + + ++IA+ NA R + L E L + Sbjct: 123 HLYLDGSSIGEVAVRSQGTHKYTEEHGRLFVLLREPLSIALANALKHREVVRLNELLADD 182 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 + ++L + G +++ + +++Q VA+ D+ VL+ GETG GK +IA IH+ Sbjct: 183 SRYFQQELRAKQG-QEVVGAEFGLRGVMEQAQQVAQLDNPVLLLGETGCGKGMIADTIHK 241 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 LS R P++ +NC AIPASLLESELFGH+KGAFTGA RGRFE A GGT+FLDEIG+ Sbjct: 242 LSRRAQGPMITVNCGAIPASLLESELFGHEKGAFTGAERQKRGRFERAQGGTVFLDEIGE 301 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 LPLE Q KLL VLQ +EIER+GGS+TI +++R+IAATNRDL MV QFR DL+YRLNV Sbjct: 302 LPLESQVKLLHVLQHKEIERVGGSQTIALDIRIIAATNRDLAGMVSSGQFREDLWYRLNV 361 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA-IDAIPTEALRQLMSWDWPGNVRELEN 569 FP+ +PPLR R EDIP L ++F Q A + +P+ AL +LM++ WPGNVRELEN Sbjct: 362 FPVMVPPLRQRKEDIPALVRYFLQHKAVELKLPSRPKLPSGALDKLMAYHWPGNVRELEN 421 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 IERA++ T G L + + L D S ++ P + + I + Sbjct: 422 FIERALIQTPGGELEIDSLLDN-----LLQTDGTRGSWEPEVNSNQLPSLETVCAEHIRK 476 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 LR G ++GP GAA LG+ TL RM ++GI+ + L Sbjct: 477 ALRRAGGKISGPGGAAEMLGVHPNTLRQRMDKMGIAYKRRL 517 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 192/558 (34%), Positives = 295/558 (52%), Gaps = 25/558 (4%) Query: 119 LFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVA 178 L ++ + Q L++++ + L I A +L D IA + Sbjct: 103 LVKPFREKDLLIMLDIARYKHQNNLQMALQREQLMQKQLQQIIEA---PFELADKIARIP 159 Query: 179 REIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPR-CMPGESVLLTQTLQTRQ 237 + F + + + R + L L + L T+ T + Sbjct: 160 DVLQTFVPFDYLHIAITGKRPHTLEDLSFQRTGFDEYEHLDNTALCKSLGLERNTILTGR 219 Query: 238 PTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHT----------PGALLLAHT 287 +L + +A ES L L + Sbjct: 220 IAQLENETGGYLSDAE-FRQWIADKIWESKLSDHLRLNARLAIAVTLPAGNLAVISFYSR 278 Query: 288 SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDI 347 ++ ++EE LL + + I + + L + + + + I Sbjct: 279 NADTYTEELFTLLGRMENGIRQLLEQIQ--QKNDALSARIVARKRVEKPLIDNEVLFEGI 336 Query: 348 IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI 407 + +S +L +++V+ + S+VLI GE+GTGKE+IAR IH+ SPR++KPL+ +NCAA+ Sbjct: 337 VGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPLITVNCAAL 396 Query: 408 PASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQERE 467 PA L+ESELFGH+KGAFTGA + G+FE+ADGGT+FLDEIG+LP+E Q KLLRVLQE+E Sbjct: 397 PAELIESELFGHEKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQVKLLRVLQEKE 456 Query: 468 IERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPL 527 ER+GGS+ I V+VRVIAATNR+L + V + +FR DL+YRLNVFP+ELP LR+R EDIPL Sbjct: 457 FERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLRERKEDIPL 516 Query: 528 LAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHL 587 LA+HF K++ ++R I I +AL+ L S+DWPGN+RE+E+V+ER++L+T G L Sbjct: 517 LAQHFVDKLSEKLSRNITDISPDALKALRSYDWPGNIREMEHVMERSLLMTTGTIL---- 572 Query: 588 NVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATR 647 + +LP + + ++++ +E E + I+QVL+ G V G GAA Sbjct: 573 ---KQIMLPKM-AAQPVGTTISSADGNRIKTLEEMEIEHILQVLKSCKGKVCGVGGAAEL 628 Query: 648 LGMKRTTLLSRMQRLGIS 665 LG+ +TL S++++LGI Sbjct: 629 LGLPPSTLNSKIRKLGIK 646 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 183/546 (33%), Positives = 282/546 (51%), Gaps = 39/546 (7%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + +++ + S +DL+ + DV + + ++ +VL R NE+ + Sbjct: 11 QELTTIYEVSKVLSSSMDLEHTLNDVLKTLESHLHISPSMIVL---RMNEEIVGVIAATG 67 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 S ++ + ++ P + + ++ + + +P Sbjct: 68 LSVAEIERGRYRLGEGMIGKIMRAGMPIVIPDVSQEPAFLHRAFEPEISQR-LHAFVGVP 126 Query: 272 LTFGNHTPGALLLAHTSS--TLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + G G L + + + + +LLQ IA+ + V + + ++ + L Q Sbjct: 127 IKVGYECIGVLAIYRSERHKGVSFRSDVRLLQMIANLVGQTV---NLHQGISAERNRLLQ 183 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 E H+L ++L I ++I S+AM+ + V A +TVL+ GE+GTGKEVIARAIH Sbjct: 184 EKHRLQKELQKRYSIKNVIGNSRAMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAIH 243 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 LSPRRDK V +NCAA+P S+LESELFGH++GAFTGA +GRFE+ADGGTLFLDEIG Sbjct: 244 YLSPRRDKAFVSLNCAALPESILESELFGHERGAFTGATQERKGRFELADGGTLFLDEIG 303 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 D+ Q KLLRVLQERE ER+GG++T VNVR+IAATNR+L + V +FR+DL+YR+N Sbjct: 304 DISPAFQAKLLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRIN 363 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 V + LPPLR+R EDIP L +HF + R + + EAL+ ++S WPGNVRELEN Sbjct: 364 VVSIFLPPLRERREDIPALIEHFLARYNAENQRKL-TLTPEALQTMVSCYWPGNVRELEN 422 Query: 570 VIERAVLLTRGNSL-NLHLNVRQSR-------------------------LLPTLNEDSA 603 +ER + RG+ + NL + ++++ + P D Sbjct: 423 CVERTATMMRGDIIRNLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMSVPPHAAPDVE 482 Query: 604 LRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + + A ER R++Q + + A AA LG L + + G Sbjct: 483 GQVTDASGAGDGEGSLPLSERDRLIQAMDRCGWVQA---KAARLLGTTTRKLGYALNKHG 539 Query: 664 ISVREV 669 I V+++ Sbjct: 540 IEVKKL 545 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 198/548 (36%), Positives = 281/548 (51%), Gaps = 39/548 (7%) Query: 125 RIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHF 184 + PV S N EQQ L LL + D+T A+ L L +AR++H Sbjct: 2 QQTDPVHDSVKNHHEQQ--LSLLYELAQIMNFTTDLTQALDKALKL------MARQLHMM 53 Query: 185 FG-LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHR 243 G + +S G+ R + L ++L R + GE + + +++ +P Sbjct: 54 RGAITLISPHTGEIRTEAGYGLKPAELRRG------RYVRGEGIT-GRVIESGRPMYISN 106 Query: 244 ADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQH 302 + L+ L+ G S + +P+ + GAL + H + E+ +LL Sbjct: 107 VSEEPLFLNRTRSRDLSKEGI-SFICVPIRLNDQVVGALSVDHLLVDEATLEDEMRLLTI 165 Query: 303 IADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 ++ + A +L+ + ++ E+ S L + S+ M+ + Q+ Sbjct: 166 VSTLLGHA---------------ALETQ-GRMDEETSSPLRPRGFVGNSEGMQKVYAQIA 209 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 VA S +TV + GE+GTGKE+ ARAIH S R KP + +NCAA+P +L+ESELFGH++G Sbjct: 210 QVAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFISLNCAALPENLIESELFGHERG 269 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 AFTGA T +GRFE+A GGTLFLDE+G+L L Q KLLRVLQER ERLGG T V+VR Sbjct: 270 AFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRVLQERAFERLGGMETHYVDVR 329 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 I ATNR+L MV FR DLFYRLNVFP+ LPPLR RPEDI LA HF +K A+ R Sbjct: 330 FITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRPEDILPLANHFIRKFAQANGR 389 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLL--TRGNSLNLHLNVRQSRLLPTLNE 600 + + L + WPGN+RELENV+ERAVLL G L HL Sbjct: 390 ENVRLSLSVMDMLQRYAWPGNIRELENVMERAVLLLGREGLVLPQHLPPALHGAHCAGIS 449 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 + ++ + DE ER IV+ L + G + AA LG+ + RM+ Sbjct: 450 GESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMG---KAAASLGLTERIMALRMK 506 Query: 661 RLGISVRE 668 + I+ +E Sbjct: 507 KYEINYKE 514 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 195/586 (33%), Positives = 293/586 (50%), Gaps = 49/586 (8%) Query: 87 YSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVAL-- 144 + + + + + L + + + + LA ++ ++ S L + L Sbjct: 122 HCYIPLEINNMILGTLE-LHNDDKHLSQEGMSFCCTLADLLAELVDSKLPALQMPAHLVT 180 Query: 145 RLLEKDRD--HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEK 202 +E+DR H+ L+ ++NA+L D L V R++ F Sbjct: 181 DNVEEDRGVPHYAALIALSNALLLVSDEVQLEEVVGRQLLQF------------------ 222 Query: 203 FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 A H P E + + P + D + P+L Sbjct: 223 ------SFIADHLLIYPVDHIAEHAVFDNVISAGVPVIIPARDMRSV----PVLSEWLVE 272 Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 + ++ + + LL + S +L+ IA ++ +A+ N + + Sbjct: 273 AHDDVVVGTAMYQDTALLGLLYLRLKNKEQSAPLLELIGAIAAQLTLALNNLRYRQELAA 332 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L+ Q +I+ S M+++ + VA S +TVLI GETG GKE Sbjct: 333 GTAF-----FPLTAQDRLEYAFPEIVGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKE 387 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 +IA AIHQ S R ++ +V+INCAAIPA+L+ESELFGH+KG+FTGA + G+FE+AD T Sbjct: 388 LIAGAIHQASDRAERQMVRINCAAIPANLIESELFGHEKGSFTGATDRRTGKFELADQST 447 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEIG+L L+LQ KLLRVLQE+E ER+GGS TI V+VRVIAATNR+L VE +FR Sbjct: 448 IFLDEIGELSLDLQVKLLRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRM 507 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRLNVFP+ LP LRDR DIPLLA F ++ + I + + +M + WPG Sbjct: 508 DLYYRLNVFPISLPSLRDRRADIPLLANFFLERYKMKSGKKISGFSQKVMSAMMKYRWPG 567 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 N+RELE++IER V+LT G + +++ T ++AQ Sbjct: 568 NIRELEHLIERQVILTEGTLIRDLDIPAAHQVMATDGSGQTEIKTIAQ-----------N 616 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 ER I VLR NG ++G GAA LG+ TTL S++++LG+S + Sbjct: 617 ERDHIFSVLRLCNGKISGKNGAAKLLGVPATTLNSKIKKLGLSRQH 662 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 190/578 (32%), Positives = 277/578 (47%), Gaps = 38/578 (6%) Query: 98 GMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVL 157 +R+I + G + + + +++ + L + L Sbjct: 124 PDGSIRWIHSRGGPHSCNGGKSYCVMGASADVT--------QRKQNEQTLLRQLSFESFL 175 Query: 158 VDITNAVLSHL---DLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH 214 + ++ DLD I + F ++ D + + + Sbjct: 176 AETSSVFAKSTLPSDLDHQIEHALWRLLDHFHGDRCGLIKVDLEGEKTI-ITHAVYREGL 234 Query: 215 CACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTF 274 + + D + G S L +PL Sbjct: 235 ERLPGDVDLVALFPWSFRQLREGRCYCFSDLAELPVEADRDRASWMAMGIRSGLHVPLRV 294 Query: 275 GNHTPGALLLA-HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT-------DLQES 326 N +++ H+ +E+ LQ I D A+ + L++ Sbjct: 295 ENRVHYLIVVESHSGILAGTEDVLNRLQIIGDLFVNALHRKATEDELRSSCDEIARLKDK 354 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L+ E L ++ ++ I+ QS+ ++ +L V+ VA + STVL+ GETGTGKE++A+ Sbjct: 355 LELEADYLRSEVRASRFNDQIVGQSEPIQGVLAMVEQVAPTPSTVLVYGETGTGKELVAQ 414 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH SPRRDK +VK+NCA++P+SL+ESELFG ++GA+TGA+ GRFE+ADG +LFLD Sbjct: 415 AIHNHSPRRDKLMVKVNCASLPSSLVESELFGRERGAYTGALTRQMGRFELADGSSLFLD 474 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EI +L LELQ KLLRVLQE E ERLG RTI V+VRVIAATNR+L + V +FR DL+Y Sbjct: 475 EIAELSLELQSKLLRVLQEGEFERLGSPRTIKVDVRVIAATNRNLLEEVRKGRFREDLYY 534 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RL+VFP+ +PPLR+R EDIPLLA F + M + I I + L S+ WPGNVRE Sbjct: 535 RLSVFPIVVPPLRERREDIPLLAWEFVRDFNEKMGKRILRIAKRDMLALQSYSWPGNVRE 594 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 L NVIE AV+++ G+ L + L P + +E ER Sbjct: 595 LRNVIEYAVIVSPGDELKIRLPENIVNAPPQMT------------------TLEEMERHY 636 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 I VLR T + G GAA L + TL SRM++LGI Sbjct: 637 IQDVLRRTEWRIKGEGGAAHILDLNPATLYSRMKKLGI 674 >UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5B4_DESRD Length = 522 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 183/518 (35%), Positives = 278/518 (53%), Gaps = 18/518 (3%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSA 212 + L+ I NA++ + L ++ EI+ S+ L DH S + S Sbjct: 19 RYETLLRINNAIVQQTTRESLFQALSNEIYQLIEYDRFSINLYDHEL-RSLSYFASAKGV 77 Query: 213 SHCACLPRCMPGESVLLTQT-LQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 S + R P E L+ QT ++T++P + + + + + G + P Sbjct: 78 SLGGKMTR--PLEKGLIAQTVIRTKEPLIIPDVKNQSYFSN---MNNMIEAGLNVTMGYP 132 Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 L + G+L + + +E + ++ ++AIAV N A + L ESL+ E Sbjct: 133 LIVRDTVLGSLHFSFKNRPDNLDEVNSFFEDLSPQVAIAVYNILAHNRLKRLNESLKNEK 192 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 L ++ + + Y+S++M D++QQV VA SD+ VLI GETGTGKE IA IH Sbjct: 193 KFLKKEAHGSFDPENFFYKSESMSDVMQQVKNVAASDAPVLITGETGTGKEYIAHCIHHT 252 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S R D LVK+NC A+ +SL ESELFGH KGAFTGA GRFE+A+ GT+FLDEI +L Sbjct: 253 SLRSDALLVKVNCPALASSLFESELFGHTKGAFTGASQQRIGRFEMANNGTIFLDEIAEL 312 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 P+ Q K+L VLQ+R ER+G SR+I + R++AATN+DL + + FRSDL+YRLN Sbjct: 313 PMPQQAKILHVLQDRCFERVGESRSISADFRIVAATNKDLLHAIHNESFRSDLYYRLNTA 372 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 + +P LR+RPEDIP+L + + ++++ ++R + L L + WPGNVREL+N + Sbjct: 373 QIHIPSLRERPEDIPVLVINLSDQISKRLHRPSPKYSDKVLESLCQYPWPGNVRELKNFV 432 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 R L ++ L S + L + + +L E E+Q IV L Sbjct: 433 HRMFLQRSAENVKL------SDVKSYLGNSQEIEYNDNNILP-----MHEMEKQHIVNAL 481 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 R G+++G GAA+ L MKR+TL R++R I+ + Sbjct: 482 RICKGVLSGENGAASLLQMKRSTLQYRLKRHNINPSDY 519 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 186/525 (35%), Positives = 283/525 (53%), Gaps = 27/525 (5%) Query: 148 EKDRDHHRVLVDITNAVLSHL-DLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW 206 R L DI+ A+ + ++ + + F L S+ +++ +++ Sbjct: 12 CTRYQELRALYDISLALGGSVGEVKKAFEEALGLLKRHFFLDK-SVYYELSEESQTLNVF 70 Query: 207 CSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCES 266 S + L GE + R+P + L+ + G S Sbjct: 71 ASAGLSKEQEFLASYKVGEGAT-GLAAKAREPIIVENIHQNLLFLNK---SGSRNEGEIS 126 Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 L +P G L ++ T ++ +E +L A +A A +S+ + ++ Sbjct: 127 YLAVPALSQERILGVLGVSLTKHSMSDFDEMVTILTIAASLMAQA---RRIHQSIHEEKK 183 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 + +E E+LL +II S ++ + + + +A S +TVLI GETGTGKE+IA Sbjct: 184 RISEEKLYYKEELLKQ---SEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIA 240 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 +AIH SPR++KP +K+NCAAIP +LLESELFGH+KGAFT A T +GRFE+ADGGTLFL Sbjct: 241 KAIHNYSPRKEKPYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFL 300 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DE+GDL L LQ K+LR+LQE+E ER+GGS+TI V+VR++AATNRDL +MV FR DLF Sbjct: 301 DEVGDLSLPLQAKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLF 360 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNV P+ PPLRDR +D+ LL+++F ++ + + + + +A L +DWPGN+R Sbjct: 361 YRLNVIPIFSPPLRDRGDDVILLSRYFLERFCKRHAKEL-HLTPKAEELLKHYDWPGNIR 419 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 ELEN IER VLL S++ + + +LP T + +E ER Sbjct: 420 ELENSIERLVLLAPSESIDEEVVL---SVLPGRVHGYTKE-------VKTRADLEELERS 469 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 I++ L+E +GI AA +LG+ + ++Q+ I + L Sbjct: 470 AIIKALKECHGI---KLQAAKKLGITNRQIGYKIQKYEIEPEDYL 511 >UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q938_DESAH Length = 525 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 177/518 (34%), Positives = 281/518 (54%), Gaps = 10/518 (1%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 D + + S LD++ + + + + + V+ + N L Sbjct: 4 DENDFFRQTALRISSSLDINKAMRNCMNYLKQHIPASGMYFVVYEPGLNIINILASIMPK 63 Query: 212 ASHCACLPRCMPGE--SVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 + +P E L + + Q + + +D + + L+ S L Sbjct: 64 KIQGSARRISIPAEYQDDLKKRFSEESQIKIINDLNDEPEPLQKIVNLVFPFE--CSLLE 121 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + L G + +SE + L+ + + A+A+ N + + L + L Sbjct: 122 MHLKLDGTRIGLFGVLSEGKHRYSEFHSHLITLVHEPFAVAISNILQHQEIQRLNKILSD 181 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 +N L +++ G II ++D+++ V+ VA +DS V+I GETGTGKEVIA AIH Sbjct: 182 DNRYLHREMMHLTG-DTIIGSKFGLKDVMRMVEHVAPTDSPVMIMGETGTGKEVIANAIH 240 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 S R+D +KINC AIP +L++SELFGH+KGAFTGA++ RGRFE A GT+FLDE+G Sbjct: 241 LSSRRKDSAFIKINCGAIPDNLIDSELFGHEKGAFTGAVSRKRGRFERAHNGTIFLDEVG 300 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +LPL+ Q +LLRVLQ+ EIER+GGS TIPV+VR++AAT+++L +MV QFR+DL++RLN Sbjct: 301 ELPLQAQVRLLRVLQQHEIERVGGSETIPVDVRIVAATHKNLEEMVRTGQFRADLWFRLN 360 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELE 568 VFP+ +PPLR R D+P L +F +K + + R ++ + ++ +++WPGNVREL+ Sbjct: 361 VFPIHIPPLRHRTIDLPALTDYFLEKKSMELKIRKRPSLAPGTMEKMQAYEWPGNVRELQ 420 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N++ERA++ + + L + P E+ L+ +++ P DE I Sbjct: 421 NLVERALIFNQMKNDESQLTFDPQLINPIPKENMTLKREDGKIIRP----LDEVMANHIQ 476 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 +VL +TNG V G GAA+ L + TL RM++L I Sbjct: 477 KVLDQTNGKVEGKNGAASLLKINPGTLRGRMKKLKIDY 514 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 194/452 (42%), Positives = 274/452 (60%), Gaps = 8/452 (1%) Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 +P + + L +P + + L W P + + G PL Sbjct: 98 QYMPYSVRKVGRIAATGLAIEEPEI---QEPLPEWIARPEWVR--AEGIRGFAGQPLIHR 152 Query: 276 NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLS 335 G L + + EE L+ IAD A A+ A A+ + L++ L+ EN L Sbjct: 153 GKVLGVLGVFARQ--IIGEECMGWLRMIADHAAAAIVTARAFAEIESLRKRLELENEYLR 210 Query: 336 EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 E++ + G++I QS A+ + QQ+D+VA +DS+VLI GE+GTGKE++AR IH+ S R Sbjct: 211 EEVTGSGAFGELIGQSPALGTVSQQIDLVAPTDSSVLILGESGTGKELVAREIHRRSRRS 270 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 ++PL+K+NCAA+P L ESE FGH KGAFTGA+ GRFE+ADGGTLFLDE+G++PLEL Sbjct: 271 NRPLIKVNCAAVPRELYESEFFGHAKGAFTGALRDRVGRFELADGGTLFLDEVGEIPLEL 330 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q KLLRVLQE E+ER+G RT VNVR+IAATNRDL E +FR DL+YRL+VFP+E+ Sbjct: 331 QAKLLRVLQEGELERVGEERTRKVNVRIIAATNRDLRMEAEAGRFRQDLYYRLSVFPVEV 390 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLR R ED+PLLA HF + AR + R + +++L +DWPGNVREL++VIERAV Sbjct: 391 PPLRRRKEDVPLLASHFLRIAARKVGRPQPLLTLAIVQKLQQYDWPGNVRELQHVIERAV 450 Query: 576 LLTRGNSLNLHLN-VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 + + L + L S+ ++ S ++ ++ T E + E + I+ L+ T Sbjct: 451 ITSTNERLLIELPQTTGSKPTRSVKSPSNSTATSQEIPIRTDLEIRQMEAENILAALQAT 510 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 +G ++GP GAA LG+K TTL SR++ LGI Sbjct: 511 HGKISGPGGAAALLGLKPTTLASRIKALGIKP 542 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 185/519 (35%), Positives = 272/519 (52%), Gaps = 27/519 (5%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + L I + +L D + V +E++ G+ + L D E + + Sbjct: 7 EELAALHAIARTLAQPGELRDQLERVLQEMNQRVGMQRGMISLLDRESGEVWLDVAHGVD 66 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 PGE + + QT +P + + + L +P Sbjct: 67 IQGMEV--SYQPGEGIT-GKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFLCVP 123 Query: 272 LTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 + + N G L + + + +L I++ IA +V +L++E Sbjct: 124 IIYDNRVVGVLSADKAARQVEDLDRELAMLSSISELIAKSVH-----------IRALEEE 172 Query: 331 NHQLSEQL-LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 N +L L S + +II S+ M+++ + VA S++TVLI GETGTGKE++ARAIH Sbjct: 173 NRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVARAIH 232 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 S R PL+++NCAA+P +L+ESELFGH+KGAFTGA++ RGRFE A GGT+FLDE+G Sbjct: 233 DRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLDEVG 292 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +L Q KLLRV+QE++ + LG SR + V+VR+IAATNR+L + V FR+DL+YRLN Sbjct: 293 ELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYYRLN 352 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VFP+ LPPLR+R DI LLA +F K + M +++ I L +S WPGNVRELEN Sbjct: 353 VFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPGNVRELEN 412 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 IERAVLL G+S+ L P+L S R + + +ER IV Sbjct: 413 CIERAVLLATGDSI------ETLHLPPSLQIRS--REGEKKESGKFNAMIESQERAMIVD 464 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 L+E++G AA LG + + ++Q+ GI R Sbjct: 465 ALKESHG---NQSQAARILGTTKRIIQYKIQKFGIDPRR 500 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 172/403 (42%), Positives = 237/403 (58%), Gaps = 13/403 (3%) Query: 265 ESALLIPL--TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 S L++P+ + F E++ +L + I A+ S + Sbjct: 254 RSNLVMPIANISIDGKQFFFCFYSRRPDAFGEQDLELCARLQPAIESAIRKMIRAASTSG 313 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L ++ + ++ QS M ++L + VA SD++VLI GE+GTGKE Sbjct: 314 PDMELDHAIEVMAGSRSESPVFDSMVGQSHLMLNILDLISQVAPSDTSVLITGESGTGKE 373 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 +A IHQLSPR+ KP VK+NCAA+P +L+ESELFGH+KGAFTGA GRFE ADGGT Sbjct: 374 HVADTIHQLSPRKSKPFVKVNCAALPINLIESELFGHEKGAFTGATERRIGRFEQADGGT 433 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEIGD+PLE+Q KLLRVLQ+REIER+GG++ I +N+RVI ATNR+L + + + +FR Sbjct: 434 IFLDEIGDMPLEVQVKLLRVLQQREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRL 493 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 D++YRLNVFP+ +P LR+R EDI L HF R + I I AL LM + WPG Sbjct: 494 DIYYRLNVFPIAMPALRERTEDIAPLVHHFIGYFGRKTGKNISGISDRALAMLMDYGWPG 553 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 N+RELENVIER+VLL +GNS++ + +A+ P E Sbjct: 554 NIRELENVIERSVLLAKGNSIDTVYLPAHPAV-----------EGIAKAGPPVLKNIFEN 602 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ER I+ VL+ G ++G GAA L + TTL S+M++LGI Sbjct: 603 ERDHIISVLKACEGRISGENGAAKILAIPPTTLSSKMKKLGIK 645 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 189/493 (38%), Positives = 258/493 (52%), Gaps = 44/493 (8%) Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 H +P L+ Q +PT +D W R + + PL Sbjct: 115 RHTEGTYAMVPLSEPLVGQVALRGEPTWAASPED---WARPAWAV---DESIHAYAAYPL 168 Query: 273 TFGNHTPGALLLAHTSSTLFSEENCQLL-----QHIADRIAIAVGNADAWRSMTDLQESL 327 F + G + + + + LL + AD ++ AV NA ++ + L+ +L Sbjct: 169 QFKGNMIGVMAVFYDRPMRGVLADLMLLHRKMHKIFADSLSAAVVNARSFEEIQHLRRAL 228 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 + EN L ++ I+ S + L+QVD+VA +D+TVL+ GE+GTGKE++A+A Sbjct: 229 ELENEHLRGEVRRARAPHSIVGDSPPLRRALEQVDMVAPTDATVLLLGESGTGKELVAQA 288 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH S R PLV++NC+AIP L ESE FGH KGAFTGA+ GRF++ADGGTLFLDE Sbjct: 289 IHDRSQRAAAPLVRVNCSAIPRELFESEFFGHVKGAFTGALRDRVGRFQLADGGTLFLDE 348 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 +G++PLELQ KLLRVLQE ER+G R+ V+VR+IAATNRDL VE +FR DLF+R Sbjct: 349 VGEIPLELQGKLLRVLQEGVFERVGEERSRSVDVRIIAATNRDLRADVEHGRFRQDLFFR 408 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 L+VFP+ LPPLR R +DIPLLA+HF + R +N I + +L S+ WPGNVREL Sbjct: 409 LSVFPVALPPLRARRDDIPLLARHFVRASCRRLNLPEPRIAHRQMAELQSYPWPGNVREL 468 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQ------------------------SRLLPTLNEDSA 603 +NVIER V++ G L L L + P ++ Sbjct: 469 QNVIERGVIMAEGGRLVLDLPPEGGMQAVSPGAAFGMPGGASPVEGGGAHDAPWGTGETG 528 Query: 604 LRSSMAQLLHPTTPEN---------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTT 654 A P+ E +R I + L G V GP GAA LG+ TT Sbjct: 529 SAGKTADFGQTGAPDPAGIISEAHWRELQRANIERALTAAGGRVHGPGGAAELLGLPPTT 588 Query: 655 LLSRMQRLGISVR 667 L SRM+ LG+ R Sbjct: 589 LQSRMKTLGLRGR 601 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 202/598 (33%), Positives = 296/598 (49%), Gaps = 47/598 (7%) Query: 86 DYSRHAVLLGSSGMAELRFI-----RTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQ 140 Y + G S + F ++ + +L + L + + Sbjct: 152 SYLAIPIYAGGS----VEFFIDAHHVRARHIWSKESISLLRLFGEVCANALGGGHDTRNE 207 Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHL--DLDDLIADVAREIHHFFGLASVSMVLGDHR 198 +V L R + D++ ++ ++D I ++ F ++ Sbjct: 208 EVRL-------QFERFVSDLSVKFINVTADEVDREIIAALEQVREMFQFDGFGLISLSPD 260 Query: 199 KNEK-FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLL 257 K E S C + L+ R D D Sbjct: 261 KGEAIVSHACYGEGIERSPEKIDISLRFPWTKERLLRGEMIHFNSREDVPEDAAVD--RQ 318 Query: 258 LLASNGCESALLIPLTFGNHTPGALLL-AHTSSTLFSEENCQLLQHIADRIAIAV----- 311 + ++ IP+ + ++ E L+ + + A A+ Sbjct: 319 SWQAMKVKANFSIPILVAGSVAYIIAAHDVRATRCLDEGLLLRLRLLGEIFANALFRCKS 378 Query: 312 --GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 ++ + L+E LQ E L +++ + II QS A++ +L+ V+ VA +DS Sbjct: 379 EAEFRNSCTEIQRLKEKLQLEAEYLQTEIICSHCNEQIIGQSAALDKVLRLVEQVASTDS 438 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLICGETGTGKE++ARAI +LS RR+KP+VK+NCA++PA+L+ESELFG +KGA+TGA+ Sbjct: 439 TVLICGETGTGKELVARAIQELSLRRNKPIVKVNCASLPAALVESELFGREKGAYTGALT 498 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 GRFE+ADG T+FLDEI ++ ELQ KLLRVLQE + ERLG ++TI V+VRVIAATNR Sbjct: 499 RQAGRFEVADGATIFLDEISEMSPELQAKLLRVLQEGQFERLGSTKTIHVDVRVIAATNR 558 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 +L + V+ FR DL+YRLNVF + +PPLR+R EDIPLLA F + M + I+ I Sbjct: 559 NLAEEVKKGTFREDLYYRLNVFQIVVPPLRERAEDIPLLAWAFVHEFNEKMGKKINRIAK 618 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 + L ++ WPGNVREL NVIE V+++ GN L++ L S Sbjct: 619 SDMNALQNYHWPGNVRELRNVIEYGVIVSTGNGLHVRLP----------------EGSGE 662 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 ++ P DE ERQ I VL+ T + G GAA LGM +TL SRMQ+LGI+VR Sbjct: 663 EIARPLL--MDEVERQHITGVLQRTGWRIKGENGAARILGMNPSTLYSRMQKLGIAVR 718 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 180/345 (52%), Positives = 234/345 (67%), Gaps = 12/345 (3%) Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 M Q LQQ+N L E+L + +I+ QS A+ +LQ+V VA +DSTVLI GETGT Sbjct: 299 MEREQARLQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGT 358 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE++ARA+H SPR+ KPL+K+NCAA+P L+ESELFGH+KGAFTGA+ GRFE+AD Sbjct: 359 GKELVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELAD 418 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDE+G+L LE Q KLLRVLQERE ER+GG+ + V+VRVIAATNRDL Q+V++ Sbjct: 419 GGTLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGA 478 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR+DL YRLNVFP+ LP LR+RP DIPLL + F K A + + I+ + + L L+ +D Sbjct: 479 FRADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYD 538 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN 619 WPGN+RELENVIERA +L+ G L + +V + +S +A Sbjct: 539 WPGNIRELENVIERAAILSDGPELVIDPDVLPVTRGGAAPAGAGGQSLVA---------- 588 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E I VL +T ++ GP GAAT LG+ TL SRM++LGI Sbjct: 589 --VEADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 186/519 (35%), Positives = 276/519 (53%), Gaps = 27/519 (5%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + R L +I V +L D + + G+ + + D + E + + Sbjct: 8 EELRTLHEIARVVSRSAELKDQLQQTLDILSSRLGMERGMVSVLDLQTGEAWLDVARGVD 67 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 R PGE + + Q+ +P D L+ + + L +P Sbjct: 68 VERGTI--RYRPGEGIT-GKVAQSGRPMGIANLGDEALFLDRTGARRSLNREELAFLCVP 124 Query: 272 LTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 + + + G L + + ++ ++L +A+ + V ++++E Sbjct: 125 IFYQGRSVGVLSADKLARRVEDLDKEVEILSAVAELLGKVVH-----------FRAVEEE 173 Query: 331 NHQLSEQLLS-NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 N +L L +II +S+ ++++L+ +D VA +++TVLI GETGTGKE++ARAIH Sbjct: 174 NSRLRRMLAEARRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIH 233 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 S R PLV++NCAA+P +LLESELFGH+KGAFTGA+ RGRFE A GGT+FLDE+G Sbjct: 234 DNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVG 293 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +L Q KLLRVLQERE + LG SRT+ V+VRVI A+N+DL + V FRSDL+YRLN Sbjct: 294 ELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLN 353 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VFP+ LPPLR+R DI LLA +F K AR +++ + I T A+ LM + WPGNVRELEN Sbjct: 354 VFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCYHWPGNVRELEN 413 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 IERAVLL GN+++ L PTL ++++ ER I Sbjct: 414 CIERAVLLAGGNAVD------SWHLPPTLQMKPVGMQNVSRGKLEALVS--AFERDLITD 465 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 L++ G AA LG + + ++++ GI R Sbjct: 466 ALKDVRG---NQSQAARLLGTTKRIVQYKVEKYGIDPRR 501 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 176/582 (30%), Positives = 291/582 (50%), Gaps = 42/582 (7%) Query: 84 MVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQ-QV 142 ++ + E+ + +F Q L+ + + + Sbjct: 184 LISRITRPLAALVKAAGEVEPGKKMDVQFNVQGQKEIQALSDAFRRMTSRIQEYTTRLEE 243 Query: 143 ALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEK 202 LE + ++ V + D+D++ + R I S +++ ++ Sbjct: 244 QAEALEHAHRRMQTTCEVARNVSALSDMDEIGGYLMRRIKKIIHCPSNLILVFGPDRDVL 303 Query: 203 FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 F + + P + + LQ Q D +++ PL Sbjct: 304 FVI-------TEKGTYPVSDRQTAQSIDAALQNLQGV---ETIDGRVFESLPLPEGFVLG 353 Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 + +++PL + + GA+L + +S ++ +L+ + + + A Sbjct: 354 EKQ--VVVPLYYEDILCGAMLASCSSKCKCDSDSMELISLVLSHASGTIRRAILH----- 406 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 Q+E +L + + + G +I + M+ + + + VA +D TVLI GE+GTGKE Sbjct: 407 -----QEEIKKLKQGVSESAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKE 461 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 ++A+AIH S RRD P V INC+A PA+LLESELFGH+KGAFTGAI GRFE A GGT Sbjct: 462 LVAKAIHARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGT 521 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEI ++ L Q KLLRVLQ ++ ERLGG ++I V+VR++AATN+DL + V+ +FR Sbjct: 522 VFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFRE 581 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRL+V P+ LPPLR+R D LLA+HF ++ A ++ I+ I + A+R L+ + WPG Sbjct: 582 DLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMRALLDYSWPG 641 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 NVRELENV+E+AV+L +G ++ L L + +++ Sbjct: 642 NVRELENVMEQAVVLCKGETIALED----------------LPDKLQGARPARRKTIEDQ 685 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E+ +++ L + AA RLG+ R+TL +++++ GI Sbjct: 686 EKNLLLETLEACGW---NKKMAAERLGIGRSTLYAKLKKHGI 724 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 168/405 (41%), Positives = 244/405 (60%), Gaps = 25/405 (6%) Query: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQ------LLQHIADRIAIAVGNADAWRSMTDLQ 324 PL G +++ + E+ + L Q + +R + A + L+ Sbjct: 256 PLITHKGAIGIVVVMVDITERRKMEDSRQKDHDKLEQQVEER---TLELRTALSEIKTLK 312 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 + L+ EN L + I+ QS +++ +L + + VA +++TVLI GETGTGKE+I Sbjct: 313 DRLEAENIYLRHENKRRHHFAQILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELI 372 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A AIH +SPR+++P++ +NCAA+P +L+ESELFG +KGAFTGA GRFE+A+G TL Sbjct: 373 AFAIHDMSPRKERPMITVNCAALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLC 432 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG+LPLELQ KLLRV+Q E ERLG TI V+VR++A TNR+L + + + +FR DL Sbjct: 433 LDEIGELPLELQAKLLRVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDL 492 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNVFP+ +PPLR R EDIPL+ F ++ +R + + I +I EA++ L + WPGNV Sbjct: 493 YYRLNVFPITVPPLRQRKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKALQDYPWPGNV 552 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 RELE++IERAV+L G L L + S + T +E ER Sbjct: 553 RELESIIERAVILCPGPVLQLADKLEIS----------------SPAFSSTVRTLEETER 596 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 +I+++L ET + G GAA LG+ +TL +RM +LGI E Sbjct: 597 DQILKILSETRWRIEGKNGAAAILGIHPSTLRARMHKLGIVRPET 641 >UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Deltaproteobacteria RepID=C7LPL8_DESBD Length = 575 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 197/576 (34%), Positives = 293/576 (50%), Gaps = 39/576 (6%) Query: 107 THGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLS 166 T G+R + + + + ++ + +EE + LE R+ L D A Sbjct: 26 TAGTRSLLPEIEMKRLVQELEVHQVELEMQNEELRQTQEALETSRNAFAELYDFAPAGYF 85 Query: 167 HLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH--CACLPRCMPG 224 D L+ V GL +H + S W D + Sbjct: 86 SFDPQGLVRSVNLLGAQLLGLER------EHLLGKPMSRWIPDADGRKVFSKHCADVLRR 139 Query: 225 ESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA---LLIPLTFGNHTPGA 281 E + + RA+ + R + + G A +++ +T A Sbjct: 140 EGNDICEIW-------LQRANGMKFHARLRSIAKESVEGTHGAIRSMIVDVTEEEKLKIA 192 Query: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVG--------NADAWRSMTDLQESLQQENHQ 333 L AH E + L R+ + +G A + + L++ LQ EN Sbjct: 193 LQNAHGELEQKVMERTRELLLTNKRLVLEIGVRKDTEESLRMAIKEIKQLKDRLQAENIY 252 Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L + G+II QS A+ + +++ +A ++TVL+ GETG GK V+ARAIH S Sbjct: 253 LQHEAAQKFNFGEIIGQSSAIAHVFDKIEQIASQNTTVLLQGETGCGKGVVARAIHARSA 312 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 R+D+ +V INC A+PA+L+ESELFG +KGAFTGA GRFE+ADGGT+FLDEIG++P+ Sbjct: 313 RKDRAMVTINCTALPANLIESELFGREKGAFTGASARQMGRFELADGGTIFLDEIGEMPM 372 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 ELQ KLLRV+Q+ E ERLG RTI V+VR+IAA+NR L + +++ FR DL+YRLNVFP+ Sbjct: 373 ELQCKLLRVIQDGEFERLGSPRTIKVDVRIIAASNRKLEEEIKNGSFREDLYYRLNVFPI 432 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 +PPLR R +DI LL F K + + + I+ IP EAL L ++DWPGNVRELE+VIER Sbjct: 433 TIPPLRARKDDIRLLVNFFVAKFNKKIGKKIETIPKEALEALENYDWPGNVRELESVIER 492 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 A+++++G SL + S ++ + ER I+ VL++ Sbjct: 493 AIIISKGPSLQILDQFNTSPKP-------------SETSGADVKALVDLERDHIIHVLQK 539 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 TN V G GAA L + +TL +RM++ GI+ + Sbjct: 540 TNWRVEGKNGAAAILDINPSTLRARMRKFGINRNSI 575 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 176/413 (42%), Positives = 256/413 (61%), Gaps = 19/413 (4%) Query: 265 ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNA-------DAW 317 L I L + T G L + L ++ +++A+ N Sbjct: 75 HEVLAIALHDESGTWGHLRFYSDREAISPAIPMALPDQVSSVVSLAIANIVSTEKLSRQL 134 Query: 318 RSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 + Q L+++N L E+ DII S M+ + Q + V+ ++STVL+ GET Sbjct: 135 EEIKHYQSQLEEQNAYLLEEAKEGFSYDDIIGSSGPMQRVFQLLSQVSFTNSTVLLLGET 194 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE++ARAIH S R+D+ +V++NCAAIPA L+ESELFGH+KG+FTGA G+FE+ Sbjct: 195 GTGKELVARAIHNSSARKDRLMVRVNCAAIPAHLIESELFGHEKGSFTGAFERRIGKFEL 254 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 A+ TLFLDEIG++PL++Q KLLR +QEREIER+GG I V+VR+IAATNR+L + V+ Sbjct: 255 ANQATLFLDEIGEMPLDMQAKLLRAIQEREIERIGGKGVIKVDVRIIAATNRNLLEEVQQ 314 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FRSDLFYRL+VFP+ LPPLR+R DI LLAK F + A++ ++I I + ++ L++ Sbjct: 315 GRFRSDLFYRLHVFPITLPPLRERTGDISLLAKQFVGRFAKNNGKSISRISSNVMKALLA 374 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTP 617 + WPGNVRELE+ +ER VLL R + + + LLP S +S A T Sbjct: 375 YPWPGNVRELEHQMERCVLLARDHVI-------RDVLLP-----SPTQSGHAPAAGIYTK 422 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 ++E ER+ I++VL + NG + GP GAA L +K TL S++++LGIS +++ Sbjct: 423 THEENEREYIIRVLNQCNGKIYGPGGAAQLLNLKVGTLNSKIKKLGISKEQII 475 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 175/419 (41%), Positives = 248/419 (59%), Gaps = 16/419 (3%) Query: 252 RDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTL---FSEENCQLLQHIADRIA 308 P L+ + L + L + + L ++ N QL I +R Sbjct: 111 SKPFDLVEVKTRIHNMLEVRLLYKKLEKNNITLEDIVQKRTVELTKTNLQLGLEIEERKK 170 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 D + + L++ LQ EN L +++ +II S+ + + Q+V+ VA Sbjct: 171 AEASLRDTYTQIKQLKDKLQAENTYLQKEVARQFNFDEIIGSSKLLSQVFQKVEQVAPMH 230 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 +TVL+ GETGTGK V+ARAIH S R+ +PL+ ++C +P +L+ESELFG ++GAFTG+ Sbjct: 231 ATVLLLGETGTGKGVVARAIHSRSSRKKRPLITVDCTTLPVALIESELFGRERGAFTGSD 290 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 + GRFE+ADGGTLFLDEIG++PLE+Q KLLRV+Q+ E ERLG RTI V+VR+IAATN Sbjct: 291 SKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRVIQDGEFERLGSPRTIKVDVRIIAATN 350 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 R+L + V + +FR DL+YRLNVFP+ LPPLR R EDI LL HF K + + + ID I Sbjct: 351 RNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRKEDISLLVNHFLIKFNKKIGKQIDIIT 410 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 +AL L WPGNVRELE+ IERAV+L+ G SL + L T+ E Sbjct: 411 QDALNTLQQHQWPGNVRELESAIERAVILSEGKSLQILDRFESFDKLATIEE-------- 462 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 P+ E E + IV+VL++T + G +GAA LG+ +TL +RM++ GI+ + Sbjct: 463 -----PSMKALVELEYEHIVKVLQQTGWRIEGNKGAALILGLNPSTLRARMRKQGITRQ 516 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 178/515 (34%), Positives = 273/515 (53%), Gaps = 25/515 (4%) Query: 146 LLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSL 205 + + L +++ + S DL + V + + S+ + D + E + Sbjct: 1 MTRHKNIELKALFEVSRVLTSSFDLAQNLYSVLEILSKELDMRRGSIFIFDKKTEEISIV 60 Query: 206 WCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE 265 L+ + R GE + + + ++T P + + G Sbjct: 61 AAYGLTQEEMSR-GRYRIGEGI-VGKVIETGLPMFIPDIEKEPQFLNK-TGSRPNKKGI- 116 Query: 266 SALLIPLTFGNHTPGALLLAH--TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL 323 S L +P+ + G + +++ ++L +A I + ++++ M Sbjct: 117 SFLCVPIRIEDEILGVISADRIYAEEQGDVDDDLRVLSVVASLIGQFIKLWESYKIM--- 173 Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + EN L QL +++ QS + + +L+ V VA +D+TVL+ GE+GTGKE+ Sbjct: 174 ----EDENIILRAQLKDRYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKEL 229 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 IA+ IH S R P V INCAAIP +LLE+ELFG +KGAFTGA+ G+FE A+GGT+ Sbjct: 230 IAKTIHFQSKRAKGPFVAINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTI 288 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEI +LPL LQPKLLRVLQER +E LG S+TI V+VR+I+ATN+DL + + FR D Sbjct: 289 FLDEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFRED 348 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LF+RLNV P+ +PPLR+R EDIPLL +++ + +++ +I EAL+ L+S+DWPGN Sbjct: 349 LFWRLNVIPIYIPPLRERKEDIPLLVEYYLKSFCNIYRKSV-SIDEEALKVLVSYDWPGN 407 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VREL N IER V++T + + ++ R + L S+ L PT E +E E Sbjct: 408 VRELANTIERLVVMTESSKIKVYDLPDTVRGVFKLKP-----YSLGDLKLPT--EVEELE 460 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 R RI+ L + N + R A LG+ L R Sbjct: 461 RIRIMDTLPKFNFNI---RKTAQALGLTERQLNYR 492 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 164/536 (30%), Positives = 267/536 (49%), Gaps = 26/536 (4%) Query: 154 HRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSAS 213 + +I+ + S + + ++ + ++L D NE F L Sbjct: 11 LNTIYEISVILNSSNMIQHSLYRSLLQMSDTLSMERGLILLHDKDTNELFVEASIGLDND 70 Query: 214 HCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT 273 + ++ + + P L ++ L A S + +P+ Sbjct: 71 EGPVKNMRYKADEGVVGKVFKYGIPILIPDVQKEPMFLNK--LGRNAKKEEISFIAVPIK 128 Query: 274 FGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNAD----AWRSMTDLQESLQ 328 N T G L + S ++S + +L+ IA +A + ++ + ++ Sbjct: 129 HQNQTYGVLAVDKVVSKMYSITTDVDILKMIATLMASFLHKVQFFTSEMEAIQQEKSRIE 188 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 +E +L ++ ++ + M +L +V +V SDS VLI GE+GTGKEV+A+ I Sbjct: 189 EEKLKLIGEVTQKYQYEGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGTGKEVVAKTI 248 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H S RR KP V +NCAAIP L+ESELFG+ KGAFTGA +G+FE ADGGT+FLDEI Sbjct: 249 HYNSNRRKKPFVAVNCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIFLDEI 308 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 GD+P+E Q KLLRVLQ++ +E+LGG++ + V+VR++AATN++L V+ +FR DL+YRL Sbjct: 309 GDMPMEAQSKLLRVLQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDLYYRL 368 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVF + LPPLR R EDIP +A+H + +++ N+ I EA+ LM+ ++PGN+RELE Sbjct: 369 NVFAIFLPPLRKRKEDIPEIAQHILKNLSKRYNKN-YTISPEAVTALMNCNYPGNIRELE 427 Query: 569 NVIERAVLLTRGNSL---------------NLHLNVRQSRLLPTLNEDSALRSSMAQLLH 613 N +ER+ G + + + + + Sbjct: 428 NCLERSAFTAGGGEIKTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIPDNDYSEAD 487 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + +ER+R+VQ L + + A AA L M + R+++ I V+++ Sbjct: 488 NELISGNMDERERVVQALEKAGWVQA---KAARMLDMTVRQMNYRIKKFNIKVKKI 540 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 179/557 (32%), Positives = 284/557 (50%), Gaps = 40/557 (7%) Query: 142 VALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE 201 ++ L+ + V+ ++ + S + + + + G S + + + + Sbjct: 1 MSHSLINESPPDFDVVTEVLKTLDSSRNAEHALKRSLWFLSRARGWRSAFIAV-EQPDGK 59 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 L + LS + P ++ + ++ + D ++ + +++ Sbjct: 60 LGGLCSTGLSDGWREGM--RFPSGEGIVGRIQESESAVVVPELDGDPMFDDRTGAVRVSN 117 Query: 262 NGCESALLIPLTFGNHTPGALL--LAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRS 319 + L P+ G L+ + ++ QLL+ +A IA A+ R Sbjct: 118 AERVALLGAPIRHEGRPLGVLVALCENPDGKRVFADDLQLLEVVASPIARAL---LLDRE 174 Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 ++S+Q+E + + I +S +M+ + QV VA + +TVL+ GE+GT Sbjct: 175 ADPSRKSVQEEISRRRNAAAPIYQVDWAIGRSASMQHVFAQVHQVAPARTTVLLRGESGT 234 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE+IARAI++LSPR+D+P V +NCAA+ +LLESELFGH+KGAFTGA +GRFE+A Sbjct: 235 GKELIARAIYRLSPRKDQPFVSVNCAALTETLLESELFGHEKGAFTGAQTQRKGRFELAH 294 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDEIGD+ Q KLLRVLQERE ER+GG+ + V+VR+I ATNR+L QMV + + Sbjct: 295 GGTLFLDEIGDISPSFQAKLLRVLQEREFERVGGTTPVRVDVRLIVATNRNLEQMVREGE 354 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR+DL+YR+NV + LPPLR+R EDIP +A++F + R RA+ EALR L S Sbjct: 355 FRADLYYRINVVSIVLPPLRERREDIPEMAQYFLNRFNRENGRAL-HFNEEALRVLSSCY 413 Query: 560 WPGNVRELENVIERAVLLTRGNSLN---------------LHLNVRQSRLLPTLNEDSAL 604 WPGNVRELEN IER + +++ LH R+ + P D + Sbjct: 414 WPGNVRELENCIERTATMAHHDTIGRSSFLCEIDQCLTKVLHHLEREDAVRPARPSDVTV 473 Query: 605 RSSMAQLLHPTTPEND-------------EEERQRIVQVLRETNGIVAGPRGAATRLGMK 651 +++ PE D E+ER+R++ + + A AA LG+ Sbjct: 474 SNALNVPAKFGAPERDAGGLGMHSGEHIPEDERERLLWAMERCGWVQA---KAARLLGIT 530 Query: 652 RTTLLSRMQRLGISVRE 668 + +++ GI +R Sbjct: 531 ARQIGYALRKHGIKLRR 547 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 176/374 (47%), Positives = 248/374 (66%), Gaps = 16/374 (4%) Query: 294 EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 E +C ++ + A + L+ L+ EN L ++ + +I+ + Sbjct: 112 EYSCSFIKDMTQHFQTQEALRRALDEVQTLKNRLEAENVYLMNEIKLSNNFDEIVTGNPI 171 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 LQ V+ VA +D++VLI GETG GKE+IARAIH LS RRD+PL+++NCAA+PA+L+E Sbjct: 172 FMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATLME 231 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 +ELFGH++GAFTGA GRF++ADGGTLFLDE+GDLP+ELQ KLLRVLQE E ERLGG Sbjct: 232 NELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGG 291 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 + TI V+VR++AAT+ DL ++ + +FRSDL+YRLNVFP++ PPLR+R EDIPLL +HF Sbjct: 292 AETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFV 351 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 + ++I+ IP + L + WPGN+REL+NVIERAV+++RGN L + Sbjct: 352 KASCEKNGKSIELIPRHVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEI-------- 403 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 DS + +A P +P + ER+ I++ L T V GP+GAA LG+KRT Sbjct: 404 -------DSLPKMVIAADAAPISP-LEVTEREHIIRALETTAWRVGGPKGAAEILGLKRT 455 Query: 654 TLLSRMQRLGISVR 667 TL +RM++LGI+ + Sbjct: 456 TLQARMRKLGINRQ 469 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 177/519 (34%), Positives = 279/519 (53%), Gaps = 25/519 (4%) Query: 151 RDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDL 210 + VL +I+ + LDLD + + + + + + + + S Sbjct: 8 QVKLNVLHEISKVIEKALDLDKALEAILKILADSLSMKRGAFS-FIEEDSGLLVISASHG 66 Query: 211 SASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 S E V + T +P + L+ D S + Sbjct: 67 LTSQEKNRGVYRMDEGVT-GRIFSTGKPFIVPDIAKEPLF-LDKTGSRSMEKERISFAGV 124 Query: 271 PLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 P+T T G L + S EE+ QLL +A +A V R + D +E+L++ Sbjct: 125 PVTLQGTTVGVLTVDRLFDQDISLEEDIQLLSIVAAMVAQFVS---LNRQVKDREENLRR 181 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 EN L +L S+ I+ +S +M + Q ++ VA + +TVL+ GE+GTGK +IA IH Sbjct: 182 ENQNLKTRLSSSFQRFFIVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGIIH 241 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 +LS R P +K+NCA++P +LLESELFG++KGAFTGA + GRFE A GT+FLDEIG Sbjct: 242 ELSERGKFPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEIG 301 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 ++P LQ KLLR LQERE ERLGG +T V+VRVIAATN++L + V++ +FR DL+YRLN Sbjct: 302 EMPAGLQAKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRLN 361 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VFP+ +P LR+R EDIP L HF KMAR R + + +L L+ ++WPGN+RE+EN Sbjct: 362 VFPIWVPSLRERREDIPSLINHFLDKMAREYGRRLV-LSNSSLDYLVEYEWPGNIREMEN 420 Query: 570 VIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 ++E+ +++ G + +L +++Q ++ P ++ A S+ + E++ Sbjct: 421 LMEKLSIMSEGQIVALKDLPSDMQQEKVCPGKVQEQARDHSLL-----------DMEKKE 469 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 I+ L+ + I + AA LG+ + + R+++ + Sbjct: 470 ILSALQRNSWIQS---RAARELGLTQRQMGYRIKKFNLE 505 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 177/500 (35%), Positives = 275/500 (55%), Gaps = 13/500 (2%) Query: 165 LSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPG 224 +S L + + V I ++ + R + + + Sbjct: 5 ISTLTCEKTMDIVLTAIRELIEYELAVVLSCEGRSRLRVLKAAGPAATKILEGYTFSLED 64 Query: 225 ESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLL 284 + +Q +P L A+ D ++ S ++ PL + G L L Sbjct: 65 RKD-IAAIVQEGKPYLFDEAEPHV----DTYAGVVDFPADHSCMVTPLYLDDTLQGVLTL 119 Query: 285 AHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGI 344 H S F+ +N +L+ ++ I++A+ ++ ++ ++ QE + L E + + Sbjct: 120 DHHSCNRFTPQNVRLVGTLSKLISLAIAQSNDKEALEKEHLAILQERNFLLE--RNAGAL 177 Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 ++I S + + +VA S + VLI GETGTGKEV+ARA+H+LS R+ P + +NC Sbjct: 178 SELIGNSVSWNRVKDAAAMVAASQTPVLIQGETGTGKEVVARAVHRLSDRKGGPFIPVNC 237 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 +AI A + ESELFGH+KG FTGA+++ +GRFE+ADGGTLFLDEIGDLPLE+QPKLLR LQ Sbjct: 238 SAISAGVAESELFGHEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRALQ 297 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 E+++ER+GG TI V+VR+IAA++ DL+ V + +FR DL+YRLNVFP+ LPPLR+R D Sbjct: 298 EKKLERIGGESTISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGSD 357 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 I +LA++FT ++ A+ E++ L+ DWPGNVR+L+N +ERA +L+RG + Sbjct: 358 ILILAEYFTGQIRARAGHKDLALAPESVDILLQADWPGNVRQLQNTLERAAILSRGGVI- 416 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 R ++ + + A L D + + +VL T G V G GA Sbjct: 417 -----RAEHIVADETPEDSFCLPGADLDATALLRFDVMVKAYLQKVLTRTGGKVYGKGGA 471 Query: 645 ATRLGMKRTTLLSRMQRLGI 664 A L +K TTL S++++ GI Sbjct: 472 AEILDLKPTTLHSKLKKYGI 491 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 179/547 (32%), Positives = 281/547 (51%), Gaps = 48/547 (8%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L +++ + D++ ++ V + + + + +R + + S Sbjct: 14 LLAEVSRTITHEEDINKVLRLVLFIMSENMHMQRGMITIL-NRSTGEIVINESFGLTEEE 72 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 R GE V + ++T + + D L+ A + IP+ G Sbjct: 73 RERGRYHIGEGV-IGHVVKTGKAVIVPSIQDEPLFLDRTGSRAQAKKEELCFICIPIKAG 131 Query: 276 NHTPGALLLAHTSSTLFSEEN--------------------CQLLQHIADRIAIAVG--- 312 + G L + ++E+ L IA I+ AV Sbjct: 132 SEIIGTLSADRHVEPVTADEHRRKTRQTDDRDERIDKLQFYVDQLSIIAAMISQAVRLKQ 191 Query: 313 --------NADAWRSMTDLQESL--QQENHQLSE-QLLSNLGIGDIIYQSQAMEDLLQQV 361 N ++ S+ + E+ Q++ S +II ++ M L + Sbjct: 192 LAYEAGSKNVQDLSNLPPFAASIPPRSEDRQVNAIPPPSPDRPANIIGNTKPMVSLYSMI 251 Query: 362 DIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDK 421 D +AK+ +T L+ GE+G GKE++A AIH S R +KP +K NCAA+P +++ESELFGH+K Sbjct: 252 DKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCAALPENIVESELFGHEK 311 Query: 422 GAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNV 481 GAFTGA+ T GRFE+A+ GT+FLDE+G+L L +Q KLLR+LQE+E ER+GGS+TI V+V Sbjct: 312 GAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGGSKTIKVDV 371 Query: 482 RVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMN 541 RVIAATNR+L +++ QFR DLFYRLN+FP+ +PPLR+R DI LLA +F +K + Sbjct: 372 RVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDILLLADYFVEKYNKANQ 431 Query: 542 RAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNED 601 + + I T A+ LM + WPGNVREL+N IERAV+L+ N ++ L PTL Sbjct: 432 KGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIH------GYHLPPTLQ-- 483 Query: 602 SALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 SS + D E++ I++ L+ T G ++ AA +LG+ + R+++ Sbjct: 484 -TAESSGTPYTGSLQQKLDAIEKEMIIEALKRTQGNMS---RAAMQLGLSERIMGLRIKK 539 Query: 662 LGISVRE 668 I R+ Sbjct: 540 FNIDYRK 546 >UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEG0_ANADE Length = 520 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 187/515 (36%), Positives = 276/515 (53%), Gaps = 13/515 (2%) Query: 155 RVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN--EKFSLWCSDLSA 212 + ++T + S LD+ I V + L + + + D + + + + Sbjct: 5 QFFRELTLRICSTLDIQKAIERVFPVLRARVPLDELRLEVLDRKLGAVRQIARVSTAGQG 64 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 + + P L + + D + ++ +L +S L +PL Sbjct: 65 RAGERITQVKPAIIPLPARLWRWADAMRGPILMDEASGEDMRMMRVLTKAEHDSDLAVPL 124 Query: 273 TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH 332 + G LLL ++ + +LL +AD A+A+ NA A + + +++ L + Sbjct: 125 RVESTQLGFLLLRAAGKGRYTAAHAELLATVADPCAVALANALAHQELVQVRDELLDDKR 184 Query: 333 QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLS 392 L+ +L ++I S + +++ V A +STVL+ GETG GK+VIA +H S Sbjct: 185 FLNRELFHATA-DEVIGGSTGLRSVMELVRQAAPLNSTVLLLGETGVGKDVIANVLHDAS 243 Query: 393 PRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLP 452 PRR+ P +K+NC AIP L++SE+FGH+ GAFTGA HRGRFE ADGGT+FLDEIGDLP Sbjct: 244 PRREGPFIKVNCGAIPEGLVDSEMFGHEAGAFTGARAAHRGRFERADGGTIFLDEIGDLP 303 Query: 453 LELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFP 512 Q +LLRVLQ REIER+GG+R + V++RVIAAT+++L QMV + +FR DLF+RLNV P Sbjct: 304 KGAQVRLLRVLQSREIERVGGTRPLKVDIRVIAATHQNLQQMVTEGRFREDLFFRLNVLP 363 Query: 513 LELPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELENVI 571 + +PPLR R EDIP L +HF R + R I AL +L ++ WPGNVRELENV+ Sbjct: 364 INIPPLRLRAEDIPALVRHFVAVKRRGLGIRGTPTISPGALARLQAYAWPGNVRELENVV 423 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 ER ++ + G R L S RS+ ++ P + I VL Sbjct: 424 ERELVRSAG---------RGRELSFEELARSQARSAPSRHEAPPPRTLADVMAAHIEDVL 474 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 T G + GP GAA LG+ +TL +RM RLGI+ Sbjct: 475 AATGGKIHGPGGAAELLGVNESTLRNRMNRLGITY 509 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 174/392 (44%), Positives = 240/392 (61%), Gaps = 12/392 (3%) Query: 281 ALLLAHTSSTLFSEENCQLLQHIADR---IAIAVGNADAWRSMTDLQESLQQENHQLSEQ 337 A+L T E NC + + R +A+ G A+ + L++ N L ++ Sbjct: 359 AILAELGKYTPEDELNCGACGYPSCREKAVAVYHGLAENRMCLPYFIAQLEKSNFHLRQE 418 Query: 338 LLSNLG-IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 L + G G ++ S AM+++ + ++ VAK+D+TVLI GE+GTGKE++ARAIH S R + Sbjct: 419 LKAFQGKFGQLVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSE 478 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 P V INCAA+P +LLESELFGH +GAFTGA+ +G FE A+ GT+FLDEIGD+ L LQ Sbjct: 479 APFVSINCAALPETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQ 538 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 KLLRVLQE E R+G +R VNVRV+AATNRDL + V+D FR +L YRLNV + LP Sbjct: 539 SKLLRVLQEGEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLP 598 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 PLR+R +DIPLLA+HF +K + + + ++ EA+ L+ DWPGNVRELENVIERAV+ Sbjct: 599 PLRERRDDIPLLARHFLEKSCQRLGKEVNGFTHEAMDALIRADWPGNVRELENVIERAVI 658 Query: 577 LTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 LT + L RQ R + A M+ E + I+Q L E+ G Sbjct: 659 LTESKRIELGDLPRQFRNMAAGASGWAFTRGMS-----FKEAVAAYESRLILQALEESQG 713 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + A AA LG+KR+TL ++R + R+ Sbjct: 714 VQA---RAAEILGLKRSTLNEMIKRYNLMGRK 742 >UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9Z4_CHRVI Length = 552 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 196/537 (36%), Positives = 294/537 (54%), Gaps = 31/537 (5%) Query: 140 QQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHH---FFGLASVSMVLGD 196 L + R+L D++ A+ ++L + +IA++ + F G S G+ Sbjct: 33 SNATEVSLAERLAFERLLGDLS-ALFANLPPERVIAEIEAALARLVDFLGFDRSSF--GE 89 Query: 197 HRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLL 256 R + ++ + P + L++ Q + + + Sbjct: 90 FRDEDSPIEVLCSVARNGIETTPLGVGLPLPWYFGALRSGQLLVLPDLPADLPPEAEIEA 149 Query: 257 LLLASNGCESALLIPLTFGNHTPGALLL-AHTSSTLFSEENCQLLQHIADRIAIAVGNAD 315 +G S L IPL G G + A + + E+ L+ + + A A+ + Sbjct: 150 EFSRQSGLRSNLSIPLRVGGRVMGVIAFSAFHRTRAWPEDLIVRLKIVGEVFAQALARSR 209 Query: 316 -------AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 A +T L+E L+ EN L + + +S +L ++ A ++ Sbjct: 210 RETELAAALAEITRLKERLEAENSYLRQS-GCARPAQMLASRSPRFNQVLDEIAQAAPTN 268 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 +TVL+ GETGTGKEV+A +H LS RR++PL+K+NCAA+PASL+E+ELFG +KGA+TGA+ Sbjct: 269 ATVLLLGETGTGKEVLADTLHALSQRRERPLIKVNCAALPASLIETELFGREKGAYTGAL 328 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 GRFE+ADGG+LFLDE+G+LPLELQ KLLRVLQ+ ER+GG+RTI V+VR+IAATN Sbjct: 329 ARQPGRFELADGGSLFLDEVGELPLELQAKLLRVLQDGVFERVGGTRTIRVDVRLIAATN 388 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 R+L + V+ FR DLFYRLNVFP+ LPPLR+R EDIP LA F + + M + I+ + Sbjct: 389 RNLARAVQAGGFREDLFYRLNVFPVTLPPLRERREDIPWLAWEFIKHFSDSMGKPIEHVA 448 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 ++++ L+ + WPGNVREL N+IERA++L RG +L++ L Sbjct: 449 EDSMQALLDYHWPGNVRELRNLIERAMILARGPTLHVALECAP----------------A 492 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 T + ER I+Q+L +T+ + G GAA RLG+K TTL SRM+RLG+S Sbjct: 493 TTTRPTATDTLADNERAHILQILEQTHWRIRGAGGAAERLGLKPTTLESRMKRLGLS 549 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 166/515 (32%), Positives = 281/515 (54%), Gaps = 27/515 (5%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L ++ A+ S D D + D+ + + F+G+ + D ++ + + Sbjct: 14 LLTSVSKAL-SQKDFDKALRDILKIFYSFWGVEYSYIAFYDKSTK---TIKIREAFGFNQ 69 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 + ++ + P + + +L E+ + +P+ Sbjct: 70 SVKKILFESGKGIVGNIFKNSIPVVIKDPKHDKAFLNK--TKILDKIKNEAFIGVPIRSE 127 Query: 276 NHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 + T G L + ++ ++ I + + + + + + S +++ L Sbjct: 128 DRTIGVFCLFKDLNKHEELTRIVDIMLVVSAMIGM---SYKLFGILQEEKASWEEQRQLL 184 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 +++ I + +S+A+ L + +A +DSTVL+ GE+G GK +IA+AIH LS R Sbjct: 185 AKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKAIHTLSER 244 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 +DKP + +NCAAIP +LLE+ELFG++KGAFTGA+++ +G+FE+A+GGT+FLDEIG+LPL+ Sbjct: 245 KDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGTIFLDEIGELPLQ 304 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 Q KLLRV+QE+E+E+LG ++I VNVRVIA+TN+DL MV +FR DL+YRLNV P+ Sbjct: 305 SQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDLYYRLNVIPIR 364 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 +P LR+R EDIPLL KHF K +H + I+ I EA+ L++++WPGN+RELEN+IER Sbjct: 365 VPALRERKEDIPLLVKHFLDKFNKHYKKHIN-IEKEAMEALVNYNWPGNIRELENLIERL 423 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 V+ +N ++ LL T + L++ + ++ T E++ I + L + Sbjct: 424 VV------INNKDITKEDVLLATKINSNKLQTDIPSIIEST-------EKEAIKKALEKC 470 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 AA LG+ L R+++ I + + Sbjct: 471 G---YVKSKAAKILGLTLRQLDYRIKKYNIPIERL 502 >UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1I6_9PLAN Length = 539 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 191/447 (42%), Positives = 263/447 (58%), Gaps = 10/447 (2%) Query: 220 RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTP 279 R P + Q +T + W D +++ S PL Sbjct: 101 RRFPVGVRKVGQIAKTGRSLEVADVAHDHGWAADRTW--ISNERIASFAGHPLLHRGEVL 158 Query: 280 GALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL 339 G L L S E + L+ IAD +A A+ NA A + L++ L+QEN L E++ Sbjct: 159 GVLGLFARQSPG--ESCFEWLRMIADHLAAAIANARALDEIDSLKKRLEQENEYLREEVQ 216 Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 GD+I QS +++ +Q+++VA +DS VLI GE+GTGKEV+AR +H+ S R D+PL Sbjct: 217 QITSFGDLIGQSPSLQATTRQIELVAPTDSAVLILGESGTGKEVVARELHRRSRRADRPL 276 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 +K+NCAAIP L ESE FGH KG+FTGA+ GRFE+AD GTLFLDEIG++PL+LQ KL Sbjct: 277 IKVNCAAIPRELYESEFFGHAKGSFTGALRDRAGRFELADRGTLFLDEIGEIPLDLQAKL 336 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LRVLQE E+ER+G RT ++VR+IAATNR+L E +FR DLFYRL+VFP+ELPPLR Sbjct: 337 LRVLQEGELERIGEERTRRIDVRIIAATNRNLRTEAEAGRFRQDLFYRLSVFPMELPPLR 396 Query: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 R EDIPLLA+H+ + +R + R + ++ L + WPGNVREL++V+ERA ++ Sbjct: 397 KRVEDIPLLAEHYLDRFSRQLGRPRPRLTLAHVQDLQRYPWPGNVRELQHVLERACIVAT 456 Query: 580 GNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVA 639 L Q + E S+ + + T E E E I + L +NG + Sbjct: 457 DGKLQFDFPKDQLKRREEPAEPSSPQHIL------TAAELRELEASNIRKALAASNGKIY 510 Query: 640 GPRGAATRLGMKRTTLLSRMQRLGISV 666 G GAA+RL MK TTL SR++ LGI + Sbjct: 511 GKNGAASRLAMKPTTLASRIKALGIRL 537 >UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Proteobacteria RepID=A0YEC8_9GAMM Length = 639 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 176/400 (44%), Positives = 254/400 (63%), Gaps = 18/400 (4%) Query: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 P+ + GA+++ + ++ + A +A + L++ L+ E Sbjct: 243 PILVNGYILGAVVI---------------FRDVSQKKAYKKALLEALAEVESLKDRLEME 287 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 N L E++ S II S ++++LQQ+D+VA + +TVLI GE+GTGKE++ARAIH+ Sbjct: 288 NAYLQEEIKSKFNHHRIIGSSAPLQNILQQIDLVAPTKATVLITGESGTGKELLARAIHE 347 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 S R + L+++NCAAIP L ESE FGH KGAFTGA + GRFE+ADGG++FLDE+G+ Sbjct: 348 SSGRSGRSLIRVNCAAIPQDLFESEFFGHVKGAFTGASSDRPGRFELADGGSIFLDEVGE 407 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 +PL LQ KLLRVLQE+E ER+G + T V+VR+I ATNRDL QMV + FR DL++RLN+ Sbjct: 408 IPLHLQGKLLRVLQEQEFERVGEAITRTVDVRIITATNRDLKQMVAEGLFREDLYFRLNI 467 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENV 570 FP+E PLR R +DIP L +HF + A N++ IP + +L ++DWPGNVRELENV Sbjct: 468 FPIESIPLRQRKDDIPQLTQHFLGQAAIRANKSDLRIPLHEIEKLKAYDWPGNVRELENV 527 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 IER V+L RGN + + N+ S + A + + ++L T P+ + E+Q I++ Sbjct: 528 IERQVILIRGNIVRFN-NLLSSDNNAIIEGAGADKDNKYEIL--TEPQLRQMEKQNIIRA 584 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 L G V G GAA L +K TTL SR+++LGI+ R+ L Sbjct: 585 LHYCKGRVFGDGGAADLLSIKPTTLSSRIKKLGINTRDSL 624 >UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTG8_DESBD Length = 806 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 176/477 (36%), Positives = 262/477 (54%), Gaps = 27/477 (5%) Query: 197 HRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLL 256 R N+ + A++C R G+ L L+ + L ++ + + Sbjct: 351 ARHNDADGSPSVTVGANYCEVCRRATAGKDSLAEVALRGIEAVLNGTSEQ---FMMEYPC 407 Query: 257 LLLASNGCESALLIPLTFGNHTPGALL-LAHTSSTLFSEENCQLLQHIADRIAIAVGNA- 314 + PL G + L + F E LQ D + + V Sbjct: 408 HSPQEERWFFMTVAPLGLGGENGAVITHLNISERVRFEVE----LQKAHDELELRVEKRT 463 Query: 315 ----DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 A + + L++ LQ EN L +++ G+II QS ++ ++ +Q++ V+ ++T Sbjct: 464 YELRAANKEINQLKDRLQAENICLRQEVAREYNFGEIIGQSDSIVNMFEQIEQVSPLNAT 523 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VL+ GETGTGK ++ARAIH S R+ + ++ +NCAA+PA+L+ESELFG ++GAFTG+ Sbjct: 524 VLLLGETGTGKGLVARAIHARSARKGRSMITVNCAALPANLIESELFGRERGAFTGSNAQ 583 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+ADGGT+FLDEIG++PLELQ KLLRV+Q+ E+ERLG RTI V+VR+IAA+NR+ Sbjct: 584 QLGRFELADGGTIFLDEIGEMPLELQSKLLRVIQDGEMERLGSPRTIKVDVRIIAASNRN 643 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + +FR DLFYRLNVFP+ +PPLR R DI LL F K + + I +P Sbjct: 644 LQDEIRKGRFREDLFYRLNVFPISIPPLRQRDGDIALLINFFVAKFNKKTGKNIKTVPKN 703 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 L L + WPGNVRELE+V+ERAV+ + G+SL + SR ++ + Sbjct: 704 TLNALQEYHWPGNVRELESVVERAVITSPGSSLQILDRFETSRKTVPVDGN--------- 754 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + ER I+QVLR+T + G GAA L + +TL +RM++ GI + Sbjct: 755 -----IKALVDLERDHILQVLRKTGWRIEGKSGAAALLEINPSTLRARMRKFGIRRQ 806 >UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfovibrio RepID=B8IZ98_DESDA Length = 554 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 170/444 (38%), Positives = 250/444 (56%), Gaps = 4/444 (0%) Query: 221 CMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPG 280 P + T +P + W P +A+ G S PL T G Sbjct: 95 RFPLGHRKVGAIAMTNRPLEVSHIEGNEDWIAAPEW--IAAEGIVSFAGQPLVCRGETLG 152 Query: 281 ALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS 340 + S ++ ++L+ +AD IA A+ NA + + + + EN L E+L Sbjct: 153 VIAF--FSRDTLAQGAMEMLRMVADHIAYAITNARLFEITRSITQRRELENAHLREELYE 210 Query: 341 NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLV 400 II +S A++ + +Q+ +V+++++TVLI G +GTGKE++A +H+ S R++ P + Sbjct: 211 ARQFTGIIGKSAAIKAIREQILVVSETEATVLIQGASGTGKELVAHELHKNSKRKNNPFI 270 Query: 401 KINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLL 460 KINCAAIP L ESE FGH KGAFTGAI+ G F++ADGGTLFLDEI ++PLELQ KLL Sbjct: 271 KINCAAIPHHLFESEFFGHVKGAFTGAIHDRMGFFQLADGGTLFLDEIAEIPLELQGKLL 330 Query: 461 RVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRD 520 RVLQE E R+G + ++R+IAATN+DL + R FR DL+YRL VFPL +P L++ Sbjct: 331 RVLQEGEFRRVGEEKNRHTDIRLIAATNKDLKAAIRKRTFRDDLYYRLQVFPLTVPTLKE 390 Query: 521 RPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRG 580 R EDIPLL +HF + R R + +P + +L +DWPGN+REL+N +ER V+ R Sbjct: 391 REEDIPLLVRHFIRIFCRKNGRRVFDVPEAQMNRLRQYDWPGNIRELQNFVERMVITGRP 450 Query: 581 NSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAG 640 +L + ++ L +S T + + E+ + L TN ++ G Sbjct: 451 EQALAYLALCEAASPEAEEAAPELCASFGIPKILTEKQMRQLEKDNMKAALERTNWLIYG 510 Query: 641 PRGAATRLGMKRTTLLSRMQRLGI 664 RGAA LGMK TTL+SR++R + Sbjct: 511 NRGAAALLGMKPTTLISRLKRFDL 534 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 170/366 (46%), Positives = 230/366 (62%), Gaps = 13/366 (3%) Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 A+ R L L++ L++++ G+II S A+ ++L +V+ VA ++S Sbjct: 121 ALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTNS 180 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVL+ GETGTGKE++A AIH S R ++P V++NCAA+ +LESELFGH+KGAFTGA+ Sbjct: 181 TVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVA 240 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 GRFE+ADGGTLFLDE GDLP+E+Q KLLR LQERE ER+GG++TI V+VRVI+ATNR Sbjct: 241 QRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATNR 300 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL M+E FR DL+YRLNVFP+ LPPLRDR ED+P L HF K AR + Sbjct: 301 DLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRG 360 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN---LHLNVRQSRLLPTLNEDSALRS 606 AL +L S+ WPGNVRELEN+IERA++L RG L+ L R P S + Sbjct: 361 AALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVISE 420 Query: 607 SMA-------QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 + + P + ER+ I+ + ++N +A AA LG+ R+TL RM Sbjct: 421 TASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIAS---AARMLGINRSTLYYRM 477 Query: 660 QRLGIS 665 ++ G+ Sbjct: 478 RKHGLE 483 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 168/464 (36%), Positives = 251/464 (54%), Gaps = 13/464 (2%) Query: 205 LWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGC 264 L D A H + L + G +T + R+ + L + +A G Sbjct: 5 LLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRP---FDAVLLDVRMAGMGG 61 Query: 265 ESALLIPLTFGNHTPGAL-LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL 323 AL + + P + + T S ++ + + V R++ L Sbjct: 62 MEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHL 121 Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + L +EN L ++L + +II +S AM +L + +VA +++TVL+ GE+GTGKE+ Sbjct: 122 R--LARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKEL 179 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +A+A+H SPR P+V +NCAA+ +LLESELFGH+KGAFTGA GRF AD G++ Sbjct: 180 VAKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSI 239 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG++ +Q KLLRV+QEREI+R+GG R + V+VR++AATNRDL + VE +FR D Sbjct: 240 FLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFRED 299 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRLNV + +PPLR+R +DIPLLA+HF + A + I A+ L+ WPGN Sbjct: 300 LYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGN 359 Query: 564 VRELENVIERAVLLTRGNSLNLHLNV----RQSRLLPTLNEDSALRSSMAQLLHPTTPEN 619 VRELEN +ERAV+L+ G + R++ + + Sbjct: 360 VRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMAL 419 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 D+ ER+ I+ LR+T G AA LG+ R TL ++++ G Sbjct: 420 DDVEREVILATLRDTGG---NKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF2_9DELT Length = 554 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 175/524 (33%), Positives = 272/524 (51%), Gaps = 5/524 (0%) Query: 144 LRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKF 203 + ++ D + + T + LDL + + I + ++++ L D Sbjct: 35 YKTRDQPMDQNIFFREATMRICGSLDLQKAMQNTLEFISSYIPADALNIGLIDPEPGVAR 94 Query: 204 SLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNG 263 S+ + MP V +P D L+ Sbjct: 95 SVVHISPDDWPESRSTVSMPQNIVSKFTREWESKPGFRILNDISLEEPAVQELIRAFWPE 154 Query: 264 CESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL 323 S L L + G LLL +++E+ +++ + ++A+ NA + L Sbjct: 155 DVSLLRTDLALESRRMGLLLLVAEGKNRYTKEHARIMSSLNKPFSVALANALQYEEAIQL 214 Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + L+ N L +L I+ + +++ V VA +S VL+ GETGTGKE+ Sbjct: 215 KNMLEDYNRDLRSELSGLSADNRIVGAEFGLRQVMRMVRQVAPLESPVLLQGETGTGKEI 274 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 A A+H S R D P +K+NC +P SL++SELFGH+KGAFTGAI+ +RGRFE AD GT+ Sbjct: 275 FANALHAASLRSDGPFIKVNCGGLPESLVDSELFGHEKGAFTGAISRNRGRFERADKGTI 334 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG+LPL +Q KLLRVLQ+ EIER+GGSRTIPV+VR+I+AT+R+L QMV+ +FR D Sbjct: 335 FLDEIGELPLNIQAKLLRVLQQNEIERVGGSRTIPVDVRIISATHRNLEQMVQRGEFRED 394 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPG 562 L++RLNVFP+ +PPLR RP+D+P L H + R M IP+ + +L WPG Sbjct: 395 LWFRLNVFPIMIPPLRQRPQDLPALLDHLVSRKCREMKITREIRIPSGTMDRLKKRAWPG 454 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 NVREL+N++ER ++ + + + L ++ ++ +++ + +E Sbjct: 455 NVRELQNLVERTLIQAHAD----NPDSAVLNLDLAVSGQKSIETNLETSGNTQVLTFEEA 510 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 + I + L G + GP GAA LG+ +TL +M++L IS Sbjct: 511 AARHIKKALEVARGKITGPGGAAEILGLNPSTLRGKMRKLNISP 554 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 171/538 (31%), Positives = 269/538 (50%), Gaps = 29/538 (5%) Query: 149 KDRDHHRVLVDITNAV-LSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 K + +I+ + S L + + ++ L + + + + Sbjct: 2 KKNGEFVAIYEISKILTSSQPLLFQSFRESLKILNIHLKLQKSLIFIRKGQDPILLAGCG 61 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 +D + +H + + Q L+ P + + D + S Sbjct: 62 NDQADNHFSFY-------YFFIEQVLKNGFPIVVPDIHKEPYFSSDISHEEDGTEEPISL 114 Query: 268 LLIPLTFGNHTPGALLLAHTSSTLFSE--ENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 +P+ + G L+ + E L + + + + Sbjct: 115 FCLPIRYERECIGVLVCEKKRESALEPLSETTLTLSLATNLFGQKIKLSMDNFKPIPFPQ 174 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 SL+ + G +I QS+ M+ ++ V VA S STVL+ GE+GTGKEVIA Sbjct: 175 SLELPPPPRKNGDIQLKNNGGVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIA 234 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 R IH LSPR++ P +K+NC+A+P ++LESELFGH+KGAFTGA+ +GRFE+A GGTLFL Sbjct: 235 RTIHYLSPRKEGPFIKVNCSALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFL 294 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+ +Q KLLRVLQERE ER+GG++TI V+VRVI ATN++L + V +FR+DL+ Sbjct: 295 DEIGDISPAVQVKLLRVLQEREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLY 354 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +R+NV + LPPLR+R EDIPLLA H K+ + +NR + I EAL+ L++ WPGNVR Sbjct: 355 FRINVVSISLPPLRERKEDIPLLADHILNKIGKELNRKL-RITPEALKLLINCHWPGNVR 413 Query: 566 ELENVIERAVLLTRGNSLN---------------LHLNVRQSRLLPTLNEDSALRSSMAQ 610 ELEN +ERA +R N ++ L Q P ++ + A Sbjct: 414 ELENCLERAATNSRNNWIDEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETP 473 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 +P ++ +++I+Q + + + A AA L + L +++ GI +++ Sbjct: 474 RSSFFSPLISDDPKEKIIQAMEKCGWVQA---KAARLLNITPRQLGYALKKYGIEIKK 528 >UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUG3_SYNAS Length = 535 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 157/365 (43%), Positives = 239/365 (65%), Gaps = 7/365 (1%) Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 + + ++ + A A+ + L++ L+ EN L +++ G G+II S ++ + + Sbjct: 173 RDVTEQHRLEAELAKAFDEIKRLKDQLEAENIYLRDEIKLKEGFGEIIGASDVIKSTIHK 232 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 + VA S +TVL GETGTGK + AR +H+ S RRD+P V +NCA++PA+L+ESELFG + Sbjct: 233 IRQVAPSKTTVLFAGETGTGKGIFARFLHRESDRRDRPFVNVNCASLPANLIESELFGRE 292 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGA+TG+ GRFE+A+ GT+FLDEIG++P+ELQ KLL+V++E E ER+G I V+ Sbjct: 293 KGAYTGSTARQIGRFELANNGTIFLDEIGEVPMELQAKLLKVIEEGEFERIGSPHPIKVD 352 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VR+IAATNRDL + ++ +FR DL++RLN+FP+ +PPLRDR DIPLL K F K ++ Sbjct: 353 VRIIAATNRDLQEEIKKGRFRQDLYFRLNIFPINIPPLRDRKGDIPLLVKAFVAKFSKSH 412 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 NR I IP + + L ++ WPGNVREL NV+ERAV+++ G+ L L + L ++ Sbjct: 413 NRDIKRIPAKIMESLKNYAWPGNVRELINVMERAVIVSEGSELQLAEKIDAIPLDSSIRG 472 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 D + + + L + ER+ I++ L++T + GPRGAA L ++ TL +RM+ Sbjct: 473 DESFSTGSGETLA-------DAEREHILKALQQTGWRIEGPRGAAQILDLQPNTLRARMK 525 Query: 661 RLGIS 665 +LGI Sbjct: 526 KLGIK 530 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 183/498 (36%), Positives = 268/498 (53%), Gaps = 10/498 (2%) Query: 172 DLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVL-LT 230 DL+ + ++ L K + + S ++ +P L Sbjct: 30 DLLRRGLDWLTRVVRFDLATVFLL---KEGRLVAVAARGSLANAKVRQHSLPLSEFPSLR 86 Query: 231 QTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSST 290 Q L+TR+ +D DP +L S +++PL G+ G L L Sbjct: 87 QALETRRAK-AFTEEDHAHGDGDPFDGVLDLPPGHSCMVVPLCAGDRCYGVLSLDRAECE 145 Query: 291 LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQ 350 + + L++ +A A+ +A+ + L + L QL + + Sbjct: 146 TYPQPVVDLVEVYGQMLATAIQSAEQRATFERLHRQDHEHAKLLEAQLGGDSEGILETSK 205 Query: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 S M DL ++ VA++D+ VLI GETGTGKE +ARAIH+ S R D+P V +NCAAIPA Sbjct: 206 SPVMRDLARRARQVAETDTPVLITGETGTGKERLARAIHRWSARADQPFVTLNCAAIPAG 265 Query: 411 LLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIER 470 LLESELFGH KGAFTGA GRF++A GGTL LDE+G+LP +LQ KLLR LQE+ E Sbjct: 266 LLESELFGHVKGAFTGATKDRAGRFQMAHGGTLLLDEVGELPFDLQAKLLRALQEKTFEP 325 Query: 471 LGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAK 530 +G +T+ +VR++AAT+ DL Q + ++FR DL+YRL+VFPL LPPLR+R ED+P L Sbjct: 326 VGSDKTVRADVRILAATHVDLQQAIAQKRFREDLYYRLSVFPLRLPPLRERREDLPQLCA 385 Query: 531 HFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL---NLHL 587 ++ A R + E L +L +++WPGN+REL N +ERA +LTRG L + + Sbjct: 386 FLLEEQANRTGRRGMRVTPEGLVRLEAYEWPGNLRELANALERATILTRGTELGPESFDV 445 Query: 588 NVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATR 647 R + ++ L E+ A + + +R+ I++VL T G V G GAA Sbjct: 446 PTRGAAVVAALPEEPAPAAGGPK--RGPVLTLAAVQREHIMRVLTLTRGRVYGANGAAAL 503 Query: 648 LGMKRTTLLSRMQRLGIS 665 LG+K +TL SRM++LGI+ Sbjct: 504 LGLKPSTLQSRMKKLGIA 521 >UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMY7_DESAA Length = 525 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 172/519 (33%), Positives = 280/519 (53%), Gaps = 17/519 (3%) Query: 155 RVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW--CSDLSA 212 + T A+ +L+ +I + + +++ L + ++ D Sbjct: 6 AFYRETTQALGEDGELEAVIHHCLLVLAKYVPADGLAIQLLEPSLKSIRTIVWQPRDEEN 65 Query: 213 SHCACLPRCMPGESVLLTQTLQT-RQPTLTHRADDLFLWQRDPLLLLLASNGCE--SALL 269 P M +L+ + + + ++DP+ L + S++ Sbjct: 66 PISGGFPEEMKEAILLMPPKTRDFLRSQTLPDIRIINRPEQDPISETLLAFTGRNYSSIS 125 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + L G++ +A +++E+ +L + ++AVG + ++ L+ L Sbjct: 126 MFLKREGKRFGSVTVAAHGRDRYTQEDLELFSLLKTPFSMAVGALLLTQEVSKLKSILDD 185 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 +++ N +II ++Q + D+++ ++++A ++ VLI GETG GKE+IA AIH Sbjct: 186 RLELQKKRITPN----EIIGRNQGLRDVVKMINLIAPQNTPVLINGETGVGKELIANAIH 241 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 +SPR+D PL+ +NC AIP +L+ESELFGH+ GAFTGA +GRFE A GT+FLDEIG Sbjct: 242 SMSPRKDGPLIIVNCGAIPQTLVESELFGHEAGAFTGAAERRKGRFERAHHGTIFLDEIG 301 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +L ++Q KLLRVLQ +EIER+GGS++I VN R+IAAT+R+L +MV + FR DL+YR+N Sbjct: 302 ELKPDIQVKLLRVLQSQEIERVGGSKSIKVNARIIAATHRNLARMVSEGAFREDLYYRIN 361 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELE 568 VFP+ +PPLR R DIP L HF +K +R + + +A+ LM++ WPGNVRELE Sbjct: 362 VFPIVVPPLRTRTNDIPALTDHFIRKKSRDLKIYPAPKLDNKAIYHLMNYHWPGNVRELE 421 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N+IERA++L G +L+ + L + + + T + I Sbjct: 422 NIIERALILWDGGALSF-------KNLNIAKTEGGAKFGAYKEKSKTPLPLETVVADHIE 474 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 VL T G + GP GAA L + +TL ++M++LGI + Sbjct: 475 NVLALTKGRINGPNGAAKILDVNPSTLRTKMKKLGIPFK 513 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 238/355 (67%), Gaps = 16/355 (4%) Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 + + L++ L+ E L E++ II QS ++ +L +++ +A SD+TVL+ G Sbjct: 171 SLSEIKKLKQQLEAERAYLQEEIKLEYNHEHIIGQSDGLKYVLYKIEQIADSDTTVLVLG 230 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 ETGTGKE++ARAIH LS R+++ ++K+NCAA+P +L+ESELFGH+KGAFTGA H GRF Sbjct: 231 ETGTGKELVARAIHNLSRRKNRTMLKVNCAALPTNLIESELFGHEKGAFTGAHARHTGRF 290 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E+A+G TLFLDEIG+LPLELQPKLLRVLQ+ E ERLG S + V+ R+IAATNR+L + V Sbjct: 291 EVANGTTLFLDEIGELPLELQPKLLRVLQDGEFERLGSSHSTKVDARIIAATNRNLEEEV 350 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 + FR DL+YRLNVFP+ +PPLRDR +DIPLL + + +K++R M + I+ IP++ + L Sbjct: 351 RNGNFREDLWYRLNVFPITMPPLRDRLDDIPLLVEFYVKKISRRMGKTIETIPSKIMETL 410 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 ++ WPGNVRELENV+ERAV+ + G L L +++ + L + Sbjct: 411 QAYPWPGNVRELENVLERAVINSSGTKLRLVDELKRPF----------------RGLSSS 454 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 ER IV+VL +T V G AA LG+ R+TL +RM++L IS + + Sbjct: 455 EKTLAAVERDHIVRVLEQTQWKVGGKNSAAEILGLDRSTLRARMRKLNISPPKTI 509 >UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator, putative n=9 Tax=Shewanella RepID=A8FQ36_SHESH Length = 518 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 168/516 (32%), Positives = 271/516 (52%), Gaps = 8/516 (1%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 + + T + S L L++ + I + + L +R + + + Sbjct: 9 EESMEKFYYKATQCLCSSLQLEESLQSYFDYIKSHLPID--GIYLNIYRPDFSDIQFIAQ 66 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 ++ + L R +P + + + LQ + +D+ L + +S +L Sbjct: 67 VNDQQSSTLDRRIPISNEM-CEALQDLDRPIIRIVNDIELDTVTQFVAPQVIPEIKSVIL 125 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + + GN G + + +F + +L+ ++ R++ E+L + Sbjct: 126 LRMVSGNTHLGVVGFYAKQAGVFRPRHVDMLEPHMQTFSLITAFNLKGRNLLRANEALAE 185 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 +N L L ++ ++ ++QQV+ +AK ++TVL+ GETG GKEVIA AIH Sbjct: 186 QNQSLKRTLN---ICNGVVGAHSGLKHVMQQVESIAKLNTTVLMLGETGCGKEVIANAIH 242 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 +LS R +KP +K+NC AIP SL++SE+FG+++GAFTGA + G FE A+GGT+FLDEIG Sbjct: 243 ELSLRANKPFIKVNCGAIPESLIDSEMFGYERGAFTGAESRKAGYFEQANGGTIFLDEIG 302 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +LPL +Q +LLRVLQ I R+GG ++ +++RVIAAT+R+L MV +FR DL+YRL Sbjct: 303 ELPLSVQVRLLRVLQNSTITRVGGHDSVQLDIRVIAATHRNLKAMVSTGEFREDLWYRLA 362 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELE 568 +FP+E+P LR R DIPLL +HF + ++ N+ + + E L L + WPGNVREL Sbjct: 363 IFPIEIPSLRQRRTDIPLLVQHFIEMLSAKFNQDQLPRVAPEQLAILSQYHWPGNVRELI 422 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 NV+ERA++ LN V + + + + P + R+ I Sbjct: 423 NVLERAIIQHPKGPLNFDFLVPEVKAEHKEKRGETIIVDPSHATDKLVP-LETMTRKYIE 481 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 LR T G + GP GAA L + T+ S+M++LGI Sbjct: 482 HALRVTGGKLYGPGGAAQLLDINPNTMRSKMKKLGI 517 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 184/528 (34%), Positives = 292/528 (55%), Gaps = 25/528 (4%) Query: 144 LRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN-EK 202 ++ L++ + ++ +T + + LD L + G M++ D + N E Sbjct: 12 MKRLQEMQKEQLMISRLTKELSTILDKKQLQLVINTSFKTELGFND-CMMIRDIKGNIEI 70 Query: 203 FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 + + + + L R + L + + L D L ++ Sbjct: 71 LGIGTENQNHTTDQQLDRYV-------KNCLDSAELLLF---DLKELSPLPSCFTKAKNS 120 Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 G A+ + L + + L L + S ++L I+ +++I N D + Sbjct: 121 GMRMAVGLGLPAVSESKNVLFLFYKSFISRDTIPERILNGISTQLSITFHNIDVQEQLKT 180 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 Q +++ ++ E+ S G I+ QS+AM+ + +Q+ VA S S V+I GETGTGKE Sbjct: 181 FQGNIRDFPKEVKEEKKSEHGFHGIVGQSEAMQFIFEQITQVAPSQSNVIIFGETGTGKE 240 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 +IA+A+H+LS K +++INCAAIPA+L+ESELFGH+KG+FTGA +G+FE A T Sbjct: 241 LIAQAVHELSEFSGKKMIRINCAAIPANLIESELFGHEKGSFTGATEQRKGKFEQAHNST 300 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEIG+LPLELQ +LLRVLQE+EIER+GG++ I VN R+I ATNR+L + V + +FR Sbjct: 301 IFLDEIGELPLELQARLLRVLQEKEIERIGGNKRIKVNARIITATNRNLEKEVAEGRFRL 360 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRLNVFP+ELPPLR+R EDIPLLA +F +K+ + I+ ++ +M+ W G Sbjct: 361 DLYYRLNVFPIELPPLRERKEDIPLLADYFLEKLYPKTGKKINGFSQNVVKMMMANPWLG 420 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 N+RELEN++ER++L +G+ + + T E E Sbjct: 421 NIRELENMVERSMLTAKGDIIREMDFPKVINYQNTDQEVQ-------------VKTLQEF 467 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 E++ I++++++ NG + G GAA LG+ TTL+S+MQ+LGI + Sbjct: 468 EKEYILKIIKKCNGRIFGEIGAAKLLGLPPTTLISKMQKLGIEKKHYF 515 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 182/551 (33%), Positives = 286/551 (51%), Gaps = 27/551 (4%) Query: 129 PVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLA 188 +L +Q L + + + V + I +A + Sbjct: 112 VMLDIAQYRHDQH----LKYNHNEAPGFQKQVEHIVGKQETTAEKIKQLASAMQSLLPYD 167 Query: 189 SVSMVLGDHRKNEK--------FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 + + R + S S A + + ++ L + Sbjct: 168 FLWVTRSSRRGAAGDLNLFRYDSQHYKSYSSEELQADMELSQRDFKLWNSKALVFDGKAI 227 Query: 241 THRADDLFLWQRDPLLLLLASN-GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQL 299 + + L + + +L+ + ESAL++ L + T + L+++ + + Sbjct: 228 FNGYEFRKLRMENEWIKVLSDHFSLESALVVELKCEEEPFQFIFF-STIADLYTKVHQGI 286 Query: 300 LQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSE-QLLSNLGIGDIIYQSQAMEDLL 358 + +A+ + + + + + L E Q+ II QS ++D+ Sbjct: 287 VNQFHKSLAL-IAQDIFYNKREISVAAAEPKPQPLKEVQVPLESDFHGIIGQSSLLKDVF 345 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 +++ +VA D++VLI GE+GTGKE +A IH+LSPR+ KP+V +NCAA+P +L+ESELFG Sbjct: 346 RKIQLVAADDTSVLILGESGTGKERVAHTIHKLSPRKSKPMVTVNCAALPLTLIESELFG 405 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H+KGAFTGA + G+FE ADGG++FLDEIG+LPLE Q KLLRVLQE+EIERLGG+ T Sbjct: 406 HEKGAFTGANDKRIGKFEQADGGSIFLDEIGELPLEAQVKLLRVLQEKEIERLGGNGTKK 465 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 +NVR+I ATNR+L + V + +FR DL+YRLNVFP+ELP LR R EDIPLL+ HF +K ++ Sbjct: 466 INVRIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPSLRQRKEDIPLLSHHFIKKYSK 525 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTL 598 + + I + ++ +L +DWPGN+RELE++IER+VLL++ + + + L Sbjct: 526 NASAQIGGVSAASMEELQQYDWPGNIRELEHLIERSVLLSKEEEITTIIVPTTTPSLAGS 585 Query: 599 NEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 N +E ER I+ +L+ G V GP GAA L M TTL S+ Sbjct: 586 NSGEF-----------RIKTMEEMERDHILSILKMCKGKVFGPGGAAEILNMPSTTLNSK 634 Query: 659 MQRLGISVREV 669 +++LGI + Sbjct: 635 IKKLGIKYEYI 645 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 175/518 (33%), Positives = 275/518 (53%), Gaps = 17/518 (3%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSA 212 RVL+ I+ + LDL+ + + + + + ++ L D + + ++ S + Sbjct: 9 ELRVLLAISKVIDQALDLESALESILKILSDTMSMRRATVTLYD-PLSGRLAISTSYGLS 67 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 + E + +T +P + L+ ++ S + +P+ Sbjct: 68 ALEKQRGVYRMDEGIT-GIIFRTAKPYVVPDISLEPLFLDKTGTRRISQERI-SFVGVPI 125 Query: 273 TFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 G + + + + + + L +A I+ + + + +L+QEN Sbjct: 126 LLHGSPIGVMNVDRVFTGQEQLDADTEFLTVVATLISQFLS---LNEKVKKREAALKQEN 182 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 L Q+ I+ +SQAM ++ Q V VA + +TVL+ GE+GTGK +I R IH+L Sbjct: 183 TSLKYQIARENHGPYIVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIGRIIHEL 242 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S R+ P +K+NCAAIP +LLE+ELFG++KGAFTGA +T GRFE A GT+FLDEIG+L Sbjct: 243 SDRKTHPFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFLDEIGEL 302 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 PL LQ KLLRVLQERE ER+G ++T V+VR+I+ATNR+L +V FR DL+YRLNVF Sbjct: 303 PLTLQSKLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLYYRLNVF 362 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ +P +R+R EDIP L HF ++M R R++ + T AL L+++DWPGNVRELEN++ Sbjct: 363 PVHVPAVRERKEDIPRLLNHFQKEMEREYGRSL-TLTTGALDLLLAYDWPGNVRELENLV 421 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE----NDEEERQRI 627 ER V+LT + L + L P + R + HP + E ER+ + Sbjct: 422 ERLVILTDDKPVEAELV--RGFLTPETHRPGPARHAPEPPAHPEQEDYCQPLKETERREV 479 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + L+ I AA L + + R+++ + Sbjct: 480 LAALKRNAWIQY---KAARELNLTPRQMGYRVRKFNLE 514 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 178/437 (40%), Positives = 258/437 (59%), Gaps = 25/437 (5%) Query: 231 QTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSS 289 ++ P+L DL + + D L +L+ + L +I +T A+ + Sbjct: 42 DIIRKETPSLV--ILDLKMPEMDGLEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGA 99 Query: 290 TLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIY 349 T + + L D + + + A + LQ+E L +L G I+ Sbjct: 100 TDYITKPFDL-----DELKMVIRQAL-------MVNHLQEEVTFLRSELNKKYG--QIVG 145 Query: 350 QSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPA 409 SQA+ D+ ++ VA S++TVL+ GE+GTGKE+ A +IHQLS RRDKP V INCAA+P Sbjct: 146 NSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQLSSRRDKPFVPINCAALPE 205 Query: 410 SLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIE 469 SLLESELFGH+KGAFTGA+ GRFE+A+ GTLFLDEI ++PL +Q KLLRVLQE+E E Sbjct: 206 SLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITEMPLSMQVKLLRVLQEKEFE 265 Query: 470 RLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLA 529 R+GG+ +I ++VRVIAATNRD + + FR DLFYRLNV P+ LPPLR+R EDIPLLA Sbjct: 266 RVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNVLPIHLPPLRERTEDIPLLA 325 Query: 530 KHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNV 589 HF +K + EA+ L+S++WPGN+REL+NVIER+++L +GN + H Sbjct: 326 MHFIKKFNPS---QEQRMSPEAMGLLISYEWPGNIRELQNVIERSIILAQGNEIKPHHLP 382 Query: 590 RQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLG 649 ++ + L + ++ + DE E++ I++ L ++NG AA LG Sbjct: 383 KEIQKLDEVKNETT--HGLIINFPDDGISFDEVEKELILKALEKSNG---NQTRAAQLLG 437 Query: 650 MKRTTLLSRMQRLGISV 666 + R+ LL R Q+ + + Sbjct: 438 ITRSALLYRAQKYRLKI 454 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 155/326 (47%), Positives = 206/326 (63%), Gaps = 4/326 (1%) Query: 343 GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402 G +I S AM+++ + + +A SD TVLI GE+GTGKE++A AIH SPR+ KP VKI Sbjct: 135 RPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKI 194 Query: 403 NCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRV 462 +C AIP +LLESELFGH+KGAFTGA G+FE+ADGGT+FLDEIGD+ LQ KLLR Sbjct: 195 DCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLLRF 254 Query: 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522 LQE+ ER+GG+ T V+VR+IAATN+DL + V+ FR DL+YRLNV ++LPPLR+R Sbjct: 255 LQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERK 314 Query: 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS 582 EDI LL +F R + + + L+ ++WPGNVREL NV ERAVL+ RGN Sbjct: 315 EDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAVLMARGNV 374 Query: 583 LNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPR 642 + ++ + L A + + + P E ER I++ L E G Sbjct: 375 IT-PESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEEYRG---NKT 430 Query: 643 GAATRLGMKRTTLLSRMQRLGISVRE 668 A LGM RTTL ++M+ LGI+ E Sbjct: 431 AVARALGMSRTTLYAKMKELGIADPE 456 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 178/524 (33%), Positives = 270/524 (51%), Gaps = 27/524 (5%) Query: 151 RDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDL 210 D +VL+ V +DLD + + I ++ L D + E FS Sbjct: 25 SDVSQVLLPFGGLVGREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARRELFSRAAHLP 84 Query: 211 SASHCAC-LPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 S L + + G + P R + F D + S L Sbjct: 85 EVSQIRVKLGQGVAGTVAKAGHAINVPDP----RGEQRFFADIDRMTGYRT----TSLLA 136 Query: 270 IPLTFGNHTP-GAL-LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 +PL G+ G L +L F++E+ Q L IA +++ A+ + ++ + +E Sbjct: 137 VPLRDGDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQELQRAKEQ- 195 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 Q+ II +S ++ + + V A +D+TVL+ GE+G+GKE+ ARA Sbjct: 196 --------PQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARA 247 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 +H PRRD+P +K++CAA+PA+L+E+ELFGH++GAFTGA + G+FE A GGT+F+DE Sbjct: 248 VHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDE 307 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IG+LPL +Q KLLRV+Q+RE ER+GG++ + V+VR++AAT+RDL +MV + +FR DL+YR Sbjct: 308 IGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYR 367 Query: 508 LNVFPLELPPLRDRP-EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 + V + LPPLR+R EDI LA+HF +AR + A+ +L + WPGNVRE Sbjct: 368 IKVVEVVLPPLRERGAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKRYRWPGNVRE 427 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL---RSSMAQLLHPTTPENDEEE 623 LEN IE AV+L G L HL + +A + L E E Sbjct: 428 LENCIESAVVLCEGEILEEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEVE 487 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 R+ I++VL G AA L + R TL +++ G+ Sbjct: 488 RRHILRVLDAVKG---NRTAAARVLAIGRNTLARKLKEYGLGDE 528 >UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRC8_SYNAS Length = 697 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 165/369 (44%), Positives = 233/369 (63%), Gaps = 15/369 (4%) Query: 297 CQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMED 356 + I +R + + L+ L++EN L ++ + G G II S + Sbjct: 342 MGICMDITERKEMENELRKQLAEINKLKLQLEKENIYLRNEIKTERGFGGIIGHSDTLRY 401 Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 +L +V VA +D+TVLI GETG GK ++A AIH++S R+DK +V +NCAA+P++L+ESEL Sbjct: 402 VLFRVQQVAPTDATVLILGETGVGKGMVAHAIHEMSARKDKTMVTVNCAALPSNLIESEL 461 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FG +KGAFTGA GRFE+ADGGT+FLDEIG+LPLELQ KLLRVLQ+ E ERLG RT Sbjct: 462 FGREKGAFTGAYARQAGRFEVADGGTIFLDEIGELPLELQTKLLRVLQDGEFERLGSPRT 521 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 + V+VRVIA+T+RDL + + +FR DL+YRLN FP+ LPPLR R EDIP LA+HF K Sbjct: 522 VKVDVRVIASTSRDLKVEMHNGRFREDLYYRLNTFPVTLPPLRMRVEDIPELARHFIDKY 581 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP 596 +R +N+ +++ + ++ L ++ WPGNVRELE+VIER V+ + L V Q P Sbjct: 582 SRKLNKQFESLSKDTMQMLQAYAWPGNVRELEHVIERGVITSPEPVFQL---VEQLEQGP 638 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 + D ++ + R+ I+QVL +T + G GAA LG+ +TL Sbjct: 639 GMEADKPIKG------------FETMAREHILQVLHKTGWKIEGKGGAAAILGLNPSTLR 686 Query: 657 SRMQRLGIS 665 R+++LGI Sbjct: 687 FRLKKLGIK 695 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 11/202 (5%) Query: 136 NDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHH-------FFGLA 188 ++A R + R+L + +V+S ++ + EIHH FF + Sbjct: 38 ERLNSEIARRKRAERTLRDRLLFEEMLSVISAGFINLSFERIDEEIHHAMKKVLNFFKVD 97 Query: 189 SVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMP--GESVLLTQTLQTRQPTLTHRADD 246 +++ + C + + +P + +Q R+ + DD Sbjct: 98 RFALLETLPDRKSWMITHCVSGTDVPSVPVGENLPVSLHPWAYEKLIQKREVLSFSKIDD 157 Query: 247 LFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIAD 305 L + D G S L IP+ G + + ++ +E L+ + + Sbjct: 158 LP-AEADVDKENWIVWGIRSNLNIPIRIGKPVDHIVAINSVKYERVWPDELIPRLRLLGE 216 Query: 306 RIAIAVGNADAWRSMTDLQESL 327 A+ + AW+++ + +E L Sbjct: 217 IFVNALERSRAWKALQESEERL 238 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 161/427 (37%), Positives = 242/427 (56%), Gaps = 6/427 (1%) Query: 243 RADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQH 302 +A D F+ + L++ L + + P +++ T + Sbjct: 49 KAMDAFVEDKYELVITDLKMPNGDGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLG 108 Query: 303 IADRIAIAVGNADAWRSMTDL--QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 D I+ + N ++ SLQ+EN L + L G ++ S+ M+ + Sbjct: 109 AFDYISKPMRNDLVTLTVNRALSYASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDT 168 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 ++ VAKSDSTV+I GE+GTGKE++ARAIH S R + PL+ +NC AIP LLESELFGH+ Sbjct: 169 IEKVAKSDSTVIIYGESGTGKELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHE 228 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGAI GRFE+A GG++FLDEIGD+ LQ K+LRV+QE++ ER+GG +TI + Sbjct: 229 KGAFTGAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINAD 288 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VR+IAAT+++L V +++FR DLFYR+NV P+ LP LR+R DI +LA HF QK A+ Sbjct: 289 VRIIAATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSK 348 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 + + EA+ ++ + WPGNVRELEN+IE V++ + L + R + Sbjct: 349 KKEVTRFTPEAIACMLHYPWPGNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQ 408 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 S + + + E+ +++ L +TNG+ AA L + RTTL+ +++ Sbjct: 409 -SFKEYQIPEEGIDFNDVVYQFEKNILLKALAKTNGV---KNRAAKLLNLNRTTLVEKLK 464 Query: 661 RLGISVR 667 RL IS Sbjct: 465 RLNISSE 471 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 179/524 (34%), Positives = 273/524 (52%), Gaps = 48/524 (9%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN 200 + + +H R+L++ + + LD + L V G + ++ Sbjct: 2 SPTKSPINQVSEHQRLLLESMSEGVYGLDENGLATFVNLAAERLTGWEANDLIGKSIHDF 61 Query: 201 EKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLA 260 H R P + Q LQ +T ++ W++D + Sbjct: 62 HH-----------HSHADGRHYPQADCPIYQCLQDG---ITRTKENEVFWRKDGTSFAVE 107 Query: 261 SNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSM 320 + P+ GA+++ ++I++R I A Sbjct: 108 YSAT------PILQEGSIQGAIVV---------------FKNISERKRIESALQKALTEN 146 Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 L+E L+ EN L ++ SN DII QS A+E L Q+ + A + + +LI GE+GTG Sbjct: 147 RFLKEKLEAENSYLQSEIESNYQ-SDIIGQSPAIEHLQTQISLSAPTSANILIQGESGTG 205 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE++ARAIHQ S R+ + LVK+NC AIP L++SELFGH+KGAFTGA+ GRFE+A+ Sbjct: 206 KELVARAIHQQSERQAQTLVKLNCGAIPEGLVDSELFGHEKGAFTGAVKQRIGRFELANK 265 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDE+ +LPL+ Q KLLRVLQE E ER+GG++TI V+VR+IAA+N++L Q V D F Sbjct: 266 GTLFLDEVSELPLDAQVKLLRVLQEGEFERVGGNKTIRVDVRIIAASNKNLEQAVHDGSF 325 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R DL+YRLNVF +++PPLR+R D+P+L+ F +K M ++ + +L+ + + W Sbjct: 326 RLDLYYRLNVFSVQVPPLRERKSDLPILSHFFAKKACADMGKSFKGLHMPSLKWMSHYQW 385 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 PGN+REL N IE +L G ++H +++ ++ S Sbjct: 386 PGNIRELSNWIEHNAILHTGGLFHIHPMAHARHDHSVEHDNESIVS------------LA 433 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E E+Q I + L NG +AG GAA L + +TL S+M++LGI Sbjct: 434 EAEKQHIQKALLHCNGRIAGANGAAQLLQLPASTLRSKMKKLGI 477 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 138/344 (40%), Positives = 207/344 (60%), Gaps = 7/344 (2%) Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 + +S+ E ++ +G ++I QS +M++L + ++ VA + +++ GE+GTG Sbjct: 258 ERIIKSVTHEFKNFNKLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTG 317 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE++ RA+H RRD P VK+NCAA+P +LESELFGH+KGAFTGA GRFE+A Sbjct: 318 KELVVRALHYGGERRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHK 377 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDEIGD+ L +Q K LR++Q++E ER+GG++TI V+VR+I ATN+DL + V++ +F Sbjct: 378 GTLFLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRF 437 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R DL+YRLN L +PPLR+R EDIP L HF ++ + ++ I E LM +DW Sbjct: 438 REDLYYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDW 497 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 PGNVRELEN +ERA++L + + L+ N S + Sbjct: 498 PGNVRELENAMERAIILCGKDLIRLNNLPISI----VKNNKEFDESKHVTPIDIKEITIR 553 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ER+ I++ L + + + LG+ R TL ++M+ I Sbjct: 554 NMEREIIIEALEKCDW---NRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCN8_DESAA Length = 529 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 167/514 (32%), Positives = 266/514 (51%), Gaps = 15/514 (2%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 D + + + S L+++ + + + +S+ L + ++ + Sbjct: 4 DPNEFFKNTVLRICSSLEVEKALWHSLLYVREHIPASQMSLHLYNPVTGIAETVAQATPG 63 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 + + ++ + ++++ +R D + + + +SAL++ Sbjct: 64 KYGRLSVKTHLSEKARRQVEAQRSQRLRRVNRVSDDPVAEE---VSRYFGGAVQSALILD 120 Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 L G L L ++ + QL + + + A+A+ N+ R + L+E L +N Sbjct: 121 LVIEGRLIGVLTLHGEVGKTYTARHEQLFRLLNEPFAVALSNSMRQRELNKLKELLTDDN 180 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 E +++ + +++ VA +S VL+ GETG GKE+IA A+H+ Sbjct: 181 PYFQEN-EEAFSENEVVGADYGLRGVMEMARQVAPLESPVLLLGETGVGKELIASAVHRA 239 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 SPRR+ PL+K+NC AIP +L++SELFGH+KGAFTGA + RGRFE AD GT+FLDE+ +L Sbjct: 240 SPRRNGPLIKVNCGAIPDTLIDSELFGHEKGAFTGASSMKRGRFERADEGTIFLDEVAEL 299 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 E Q +LLRVLQE+EIER+G + T V++RVIAAT+R+L +V +FR DL +RL VF Sbjct: 300 SPEAQVRLLRVLQEKEIERVGAAETTHVDIRVIAATHRNLDGLVSMGRFRQDLLFRLKVF 359 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELENV 570 P+ +PPLRDR DIP L +HF + + M I + A+ +LM + WPGNVRELEN Sbjct: 360 PIVIPPLRDRKGDIPSLVQHFVRIKSLDMKLGTIPPLAPGAMDKLMDYSWPGNVRELENA 419 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 +ERA++L+ G + P +L P D+ + + Sbjct: 420 VERALILSGGKKPVFQEFDLGLKPGPKTKNVESLS----------LPTMDQAMADLMRKA 469 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 L G V G GAA LGM TL +RM++LG+ Sbjct: 470 LVLAKGRVEGKGGAAEILGMHPMTLRNRMKKLGV 503 >UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4F1_9PLAN Length = 533 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 184/514 (35%), Positives = 286/514 (55%), Gaps = 7/514 (1%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L+ + H++L + + +A + ++ + ++ +L +L+ + Sbjct: 7 LLLAVWRETCRHIELGEAMERIAPLLAPAIPAQAMLVRHVAVDRSVMETLAAVELAGTEQ 66 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 A +PR VL + H A D+ + + P LL ++G + +PL Sbjct: 67 AAMPRSEMAPEVLDGMLAWWHLRRVRHAAADVII-RELPALLPPETSG--DVIAVPLACE 123 Query: 276 NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLS 335 + ++L +F+E + QL +A+ +A+AV N + + L+E ++ EN +L Sbjct: 124 HGLFAVMILVSRKGVVFTEGHQQLALALAEPLAVAVENDRRLKELVALREKVEAENRRLL 183 Query: 336 EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 +L + I+ + +++++ +VA++D VL+ GETG+GKEVIARA+H+ S R Sbjct: 184 SKLGRSDLSETIVGSESGLREVMERATLVARADVPVLLLGETGSGKEVIARAVHRGSRRA 243 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 + P +++NC AIPA L++SELFGH+KG+FTGA +G FE ADGGTLFLDE G+L Sbjct: 244 EGPFLRVNCGAIPAELVDSELFGHEKGSFTGASAIRKGWFERADGGTLFLDECGELTPAA 303 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q +LLRVLQ+ ER+GG + + V+VRVIAAT+R+L MV + FR DL+YRL VFP+ L Sbjct: 304 QVRLLRVLQDGTFERVGGEKQLHVDVRVIAATHRNLQGMVREGTFREDLWYRLAVFPVHL 363 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLRDR EDIP +A HF + A E + L+++ WPGN REL V+ERA Sbjct: 364 PPLRDRREDIPAMAIHFAARAAARYGLRPCNPTEEDMHLLLNYSWPGNARELGAVMERAA 423 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE----NDEEERQRIVQVL 631 +L G+SL++ + LP A R+ A + E DE R+ I L Sbjct: 424 ILGNGHSLDVATALGNVPALPAATSPPAQRAPAAVASSSASRETVVTLDEANRRHIQSAL 483 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 T+G + G RGAA LG+ TL +RM++LGI+ Sbjct: 484 AATDGQIEGHRGAAKILGINPHTLRARMRKLGIA 517 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 187/593 (31%), Positives = 283/593 (47%), Gaps = 21/593 (3%) Query: 74 VTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIIT-PVLQ 132 V A T+++ + D + ++ + L ++ H S+ I+ P + Sbjct: 107 VDARTDWEITLHDGDHLCLGDPAAPVTVLVYLPEHARSAASELGDRLIASRSIVDLPAVT 166 Query: 133 SWLNDEEQQVA--LRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASV 190 + + + L+ + I V + +L + +VA + Sbjct: 167 HRVEHDPASALRLYKALQPLSARLDLSATIDAVVCATFELLPQVTNVAVLMRSEVDKDRF 226 Query: 191 SMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLW 250 ++ + R S P + +L + L R +T A + Sbjct: 227 TVAVSQTRDGSGH---GEARGESRGDGRPAEVRASRSVLRRVLSERAAVITANAQEELAS 283 Query: 251 QRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAI 309 + S + +PL G+ G + + S+ + SE + ++ + + A+ Sbjct: 284 SES-----ILGGKILSMVAVPLWRGDEITGLIQADNRASAGMLSERDLEVALLLGAQAAL 338 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 A+ NA + +E L+ EN L + NL +II +S AM+ + Q+ V + + Sbjct: 339 AIDNAALVSRLKVAEERLRGENTYLKRR-EENLRFENIIGESSAMQAIFDQLRKVVDTRA 397 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TV I GETGTGKE+IA AIH S RRDK V NCAA+P +LLESELFGH KGAFT A Sbjct: 398 TVCIEGETGTGKELIATAIHYESNRRDKMFVAQNCAALPENLLESELFGHKKGAFTSADT 457 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 +G FEIADGGTLFLDEIG++PL LQ K+LRVLQE I LG +R V+ R+I ATNR Sbjct: 458 DKKGLFEIADGGTLFLDEIGEMPLSLQAKVLRVLQEGTIRPLGSTRERQVDARIICATNR 517 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL VE FR DL+YRL VFP+ LPPLR+R EDIP L +HF ++ +R + + Sbjct: 518 DLAAEVEKGSFRQDLYYRLVVFPIRLPPLRERREDIPPLCEHFLKRYSREFRQEVLGFSQ 577 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 E L + ++ WPGN+RELEN ++R V+ T S + S L P L + + +A Sbjct: 578 ECLDVMSTYQWPGNIRELENEVQRLVIQTDAGS-----WIEVSELSPRLRKVEGTLARIA 632 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 ++ ER + + LRE + A LG+ R L ++ + Sbjct: 633 PKKGTLKAMMEQVERWLLAEALREHDN---NKTRTAQSLGITREGLHKKLSKY 682 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 162/518 (31%), Positives = 270/518 (52%), Gaps = 24/518 (4%) Query: 150 DRDHHRVLVDITNAVLSH-LDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 RD L++ + + S+ DL L+ + + S+++ + Sbjct: 8 KRDKLNTLINTSLLINSNYSDLSVLLEKIVESAMDVVEGDAASLLMLEPDGERLRFEIAI 67 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 + + G + ++ + + + D L + DP + + + + Sbjct: 68 GPKGIEAKKMVLDLDG---IAGWVIKYNRSAIIN--DVLSDPRFDPTVQKVTGYKNRNMI 122 Query: 269 LIPLTFGNHTPGAL-LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 +P+ + G + +L F ++ +L+ A + AIA NA + E Sbjct: 123 AVPMRIKDECIGVIEVLNKREEKDFDSDDLNVLELFATQTAIAYQNAKHY-------EKS 175 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 ++E L +QL + G I +S+ M + L+ +A SD++VLI GE+G GKE+IA Sbjct: 176 REEIICLQDQLEQDRGYHTFIAKSKVMNEKLELCRNIAASDASVLILGESGVGKELIAEQ 235 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 +H S R + P +++NCAA+P LLESELFGH +GAFT AI+ +GRFE+AD GT+FLDE Sbjct: 236 LHLNSRRVNNPFIRVNCAALPEGLLESELFGHVRGAFTDAISDRKGRFELADKGTIFLDE 295 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IGD+PL LQ KLLRVLQE ER+G ++T+ V+ R+IAATN+++ ++V +FRSDL+YR Sbjct: 296 IGDIPLTLQTKLLRVLQEMAFERVGSNKTLTVDTRIIAATNKNIEELVRQGKFRSDLYYR 355 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 LNV P+ +PPLR+R +DI LA F +K ++ + + +A + + ++ WPGN+REL Sbjct: 356 LNVLPIYIPPLRNRKDDIQELAHFFLKKFSKEVKKPFLGFSPDAEKLINAYSWPGNIREL 415 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 EN +ERA +L + + + + E S+ + ++ ++ I Sbjct: 416 ENAVERACVLGKPPYIEEKDLLLKF-------ESSSFEPEVNYSNPDLKSAVNDFKKSFI 468 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 V++L E AA +LG++RT L ++ L I Sbjct: 469 VKILNEHKW---NQTAAAEKLGIQRTYLSRLIKELEIK 503 >UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB78_DESAA Length = 1036 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 189/550 (34%), Positives = 281/550 (51%), Gaps = 25/550 (4%) Query: 121 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVL---VDITNAVLSHLDLDDLIADV 177 +A ++ VL+ + + L R+L + N + S D +L+ + Sbjct: 505 QGMADRLSGVLEQYHEETIPPDLKPLFRTRASAQRLLSGIYSLGNDMASVQDGKELLHSI 564 Query: 178 AREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQ 237 ++ G ++ + + + L AS + + +Q Sbjct: 565 LSTVNQLTGAERGAIFVANEDPHG----PPMKLRASRNLTADQVERPAFEPSMRLIQQAA 620 Query: 238 PTLTHRADDLFLWQRDPL-LLLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEE 295 + + P +S S++ P+ F T G L + ++ F E Sbjct: 621 SLGVDKKSFIRKESAPPEEWSAGSSEAARSSICAPIIFKGKTLGVLYHDNRLLNSAFKES 680 Query: 296 NCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAME 355 + +LL A + A A+ NA+A + L+ ++ Q S S ++I +SQA+ Sbjct: 681 DFELLSFFAAQAAAALDNANAQEEIERLKRAMAQGGRIQSRPSFSRENYKEVIGKSQAVR 740 Query: 356 DLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESE 415 +L ++ VAK+ S VLI GETG GKE+ A A+H S RR K VK NC+A+ +L+ SE Sbjct: 741 KMLHLIEQVAKTGSNVLILGETGVGKELAANAVHYHSKRRGKAFVKANCSALTETLINSE 800 Query: 416 LFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSR 475 LFGH+KGAFTGA + GRFE+AD GT+FLDEIGDLPL++Q LLRVLQ E ER+GG+ Sbjct: 801 LFGHEKGAFTGASSRRIGRFELADKGTIFLDEIGDLPLDVQANLLRVLQSSEFERVGGNE 860 Query: 476 TIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQK 535 TI + R+IAATNRDL ++ D++FR DL+YRLNVFP+ +PPLRDR EDIPLLA+ F + Sbjct: 861 TIRSDFRLIAATNRDLERLAADKKFRQDLYYRLNVFPILVPPLRDRKEDIPLLAEQFIRG 920 Query: 536 MARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLL 595 A+ M + I E + +L+ + WPGN+REL NVIER ++L+ G Q+ Sbjct: 921 FAQKMQIEVKKISREEMNKLLKYHWPGNIRELANVIERGMILSSGPLFTAPDLEGQTDGH 980 Query: 596 PTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 S +E ER I+ L + N V GP G A L + +TL Sbjct: 981 SLHRPHS----------------LEENERSHILWALEQKNWKVRGPGGVAEFLDINPSTL 1024 Query: 656 LSRMQRLGIS 665 +RM++LGI Sbjct: 1025 AARMKKLGIK 1034 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 183/521 (35%), Positives = 276/521 (52%), Gaps = 26/521 (4%) Query: 154 HRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSAS 213 + L I + +++L+A++ +H GL + + + + S + Sbjct: 22 LQALAQIARILNRGRPIEELLAEILAVLHEDLGLLHGLVSICNPKDGSLQVGAVHSDSET 81 Query: 214 HCACLP--RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 R GE V L+ + R D + L L + + +P Sbjct: 82 VVRACESTRYRIGEGV-FGNILKHGNSVVLGRIDAEPRF----LDRLALYDMDLPFIAVP 136 Query: 272 LT-FGNHTPGALLLA-HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + T G L + E +L++ +A +A V + + Sbjct: 137 IKAVDGTTIGVLAAQPDRRADELMPERTRLMEIVARLLAQTVRLVVNLED----GQEVVD 192 Query: 330 ENHQLSEQLLSNLGIGDII-YQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 E +L ++ + G +++ + +M + QV VAK +STVLI GE+GTGKE+IA AI Sbjct: 193 ERDELRREVRAKYGFENMVVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASAI 252 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H SPR +PLV++NCAA+P +LLESELFGH+KGAFTGA+ +GRFE ADGGTLFLDEI Sbjct: 253 HYNSPRAHQPLVRLNCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEI 312 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G++ Q KLLRVLQE E+ER+GGS+T+ VNVR++AATNRDL VE +FR DL+YRL Sbjct: 313 GEISPMFQAKLLRVLQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRL 372 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NV + +PPLR+R DIP LA+ K+AR R + + ALR LMS WPGNVRELE Sbjct: 373 NVMAIRVPPLRERSADIPELAEFLLDKIARQQGRKLK-LTDSALRLLMSHRWPGNVRELE 431 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N +ER+ +++ ++ SR + +L + +A + ++ ++R+R++ Sbjct: 432 NCLERSAIMSEDGTI--------SRDVVSLTGLDHDATPLAPVPEVDLADDSLDDRERVI 483 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 L + + A AA LGM + R+Q L I +R++ Sbjct: 484 AALEQAGWVQA---KAARLLGMTPRQIAYRVQTLNIHMRKI 521 >UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMI0_DESAH Length = 524 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 177/517 (34%), Positives = 276/517 (53%), Gaps = 13/517 (2%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 D + ++T + L++D + + I F ++ V+ + ++ +DL+ Sbjct: 3 DENVFFKNVTRLICGDLEIDKALKECLDYIRAFIPADAMGFVIYLPEQKMFETIARADLA 62 Query: 212 ASHCACLPRCMPGESVLLTQTLQT--RQPTL-THRADDLFLWQRDPLLLLLASNGCESAL 268 A ++T P + D + + +G SA+ Sbjct: 63 ---GADTRSVKFPADTFYQNRMKTDFSAPRITVAHPGDPEDYTLKFIRQAGWMDGL-SAI 118 Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +I + GAL + + +++ +L+ + + IA+ N +R + +L+ L Sbjct: 119 MIEMVLTGKRMGALPMISKKQIRYEKKHIRLISLLNEPFGIALTNCLRYRKVKELKNRLL 178 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 + L ++L ++ I +I+ ++ +++ V VA +S VL+ GETG GKEVIA+AI Sbjct: 179 DDKRYLEKELF-HVNIQEIVGSDGGLKGVMESVAQVAALNSPVLLLGETGVGKEVIAKAI 237 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H S RR P +K+NC AIP SL++SELFGH+KGAFTGA++ GRFE A GT+FLDEI Sbjct: 238 HMASGRRSGPFIKVNCGAIPESLIDSELFGHEKGAFTGALSRKLGRFERAHLGTIFLDEI 297 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+LPL+ Q +LLRVL++ EIER+GG T+ ++ RV+AATNRDL M+++RQFR DL++RL Sbjct: 298 GELPLDAQTRLLRVLEDMEIERVGGDETVSIDSRVLAATNRDLDAMIKNRQFREDLYFRL 357 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA-IDAIPTEALRQLMSWDWPGNVREL 567 VFP+E+PPLRDR DIP L +F K A+ + I A+ +L LM++DWPGN+REL Sbjct: 358 KVFPIEIPPLRDRKTDIPALVHYFMHKKAKEIAFPGIPALALNSLPILMAYDWPGNIREL 417 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 EN +ERA++ RG L+ + L I Sbjct: 418 ENAVERALITCRGMPLSFDDLATAIGPKKGMIAPKDTDVEATDGLSTLNAAAAS----HI 473 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + L++ G V GP GAA L + TL +M+RLG+ Sbjct: 474 RKALQKCRGRVEGPHGAAVLLDVHPATLRQKMRRLGV 510 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 150/354 (42%), Positives = 224/354 (63%), Gaps = 11/354 (3%) Query: 315 DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 + + ++ L ++ QL N +II ++ ++D++ +++ STVLI Sbjct: 326 ELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIR 385 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GE+GTGKE+IA+AIH S R++KP V++NCA+IP +LLESELFG++KGAFTGA+ + G+ Sbjct: 386 GESGTGKELIAKAIHNNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAVQSKPGK 445 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 F IAD GT+FLDEIGD+PL +Q KLLRVLQEREIE +GG ++VRVIAATNR+L +M Sbjct: 446 FAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEM 505 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 +ED FR DL+YRLNV + LPPLR+R EDIP LA+HF K+ + +++ I I +AL Sbjct: 506 IEDGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQDALNL 565 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 L+ + WPGN+RELEN++ERA+ L G+ ++ S LP+ + +S + Sbjct: 566 LIEYSWPGNIRELENIMERAINLCDGDYID-------SSYLPSYLKPVESKSFNLNIDID 618 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 +E E+Q I +++ A LG+ T+ + ++ I V++ Sbjct: 619 HILPFEEYEKQIIEAAMKKYKSF----NKAGKALGLTHRTVSLKCKKYNIEVKK 668 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 164/368 (44%), Positives = 240/368 (65%), Gaps = 17/368 (4%) Query: 297 CQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMED 356 +++ + +R + + + L+ L+Q+N L E++ DI+ +S AM Sbjct: 784 LAVIEDVTERKLMQEQLQNRLLEIERLKGQLEQDNIALREEVSLLSPHDDIVARSPAMRQ 843 Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 +L +V+ VA +DSTVLI GETGTGKE+IARA+H LS R+ +PLV +NCA++P +L+ESEL Sbjct: 844 VLLRVEQVAPTDSTVLITGETGTGKELIARAVHNLSARKGRPLVTVNCASLPPTLMESEL 903 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FG +KGA+TGA++ GRFE+ADGGTLFLDE+G+LP ELQ K+LRVL+E ERLG +++ Sbjct: 904 FGREKGAYTGALSRMAGRFEVADGGTLFLDEVGELPPELQAKMLRVLEEGRFERLGSTKS 963 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 + VNVR++AATNRDL Q+V+ +FR DL+YRLNVFP+ +PPLR+RPEDIP L F + Sbjct: 964 LHVNVRILAATNRDLAQLVQAGRFRRDLYYRLNVFPIAIPPLRERPEDIPPLVWAFIHQF 1023 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP 596 + M + + + ++ L WPGNVREL NVIE A++++ G++L + + + Sbjct: 1024 EKRMGKHVQRVLKRSMDALERHAWPGNVRELRNVIEHAMIVSSGSTLKVFPPMIR----- 1078 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 A+ +E ER+ I++VL VAG GAA LG+K TTL Sbjct: 1079 ------------AEDSSAEVLNLEESERRHILRVLTLAGWRVAGKGGAAEILGLKPTTLE 1126 Query: 657 SRMQRLGI 664 +RM++LG+ Sbjct: 1127 ARMKKLGV 1134 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 162/379 (42%), Positives = 226/379 (59%), Gaps = 21/379 (5%) Query: 285 AHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGI 344 T N LL+ + VG + + +T L E L ++L Sbjct: 117 DRHRRTRLVRVNTALLKDADGHV---VGGVEIFHDVTQLAE--------LKKELKGRYAF 165 Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 G II QS+ M +L + +VA+S STVLI GE+GTGKE+IA AIH+ SPR+D P +K+NC Sbjct: 166 GKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVNC 225 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AA+ +LESELFGH +GAFTGA+++ GRFE+A GGTLFLDEIG++ +Q KLLRVLQ Sbjct: 226 AALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVLQ 285 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 E E ER+GG++T+ V+VRVIAATNRDL ++ FR DL+YRL V PL LPPLR+R ED Sbjct: 286 EEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERRED 345 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 IPLL F + + + + EA LM+ +PGN+REL+N+IE AVLL+ G ++ Sbjct: 346 IPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIG 405 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 + R +P SS A + + E I + + +T G ++ A Sbjct: 406 VRELPRDLAPIPE-------ESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMS---QA 455 Query: 645 ATRLGMKRTTLLSRMQRLG 663 A LG+ R+TL +++ +G Sbjct: 456 AKLLGIGRSTLWRKLREMG 474 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 180/396 (45%), Positives = 241/396 (60%), Gaps = 23/396 (5%) Query: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 PL GA+++ + + + A + L+E L+ E Sbjct: 314 PLRDRGRLIGAVVV---------------FRDVTQKREANEQLRAALAEVDRLRERLEME 358 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 N L E++ + II +S+A++ +L+QVD+VA +D+TVLI GE+GTGKE+IARAIH Sbjct: 359 NAYLQEEIRAETSHRGIIGRSEAIKKVLRQVDLVAPTDATVLITGESGTGKELIARAIHD 418 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 S RR++PL+++NCAAIP L ESE FGH +GAFTGA+ GRFE+AD GTLFLDE+G+ Sbjct: 419 ASERRERPLIRVNCAAIPRELFESEFFGHVRGAFTGALRDRVGRFELADRGTLFLDEVGE 478 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 +PLELQ KLLRVLQE + ER+G RT V+VR+IAATNRDL V +FR DLFYRL+V Sbjct: 479 IPLELQSKLLRVLQEGQFERIGEERTRQVDVRIIAATNRDLKAAVRAGRFREDLFYRLDV 538 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENV 570 P+E PLR+R EDIPLLA HF + R + +R+L ++DWPGNVREL+NV Sbjct: 539 MPIESVPLRERREDIPLLAAHFLDGVRRKPADGPLQLSAGDMRRLQTYDWPGNVRELQNV 598 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 IER ++L R L++ L R++ SA + A R I+ Sbjct: 599 IERGIILARNGRLHIDLPDREAPATAQPVPPSAELETEADRRLRL--------RTSILAA 650 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 L G V+GP GAA RLG+K TTL SRM+ LGI+ Sbjct: 651 LEAAGGKVSGPGGAAERLGLKPTTLASRMKTLGITP 686 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 182/570 (31%), Positives = 282/570 (49%), Gaps = 53/570 (9%) Query: 136 NDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLG 195 + ++ + R + + L + AV D + + + + ++ L Sbjct: 479 DRIQRLIDRRFFRQKYQLDKALKRMNRAVGRLGDQRSIADRMLTSCREVLQVKNAAIYLL 538 Query: 196 DHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPL 255 + + + L + H P +P LL R L + P Sbjct: 539 NPERTQFDLL-----TGFHIENAPSAVPCGPELLEVLEGELA---FQRVATGLLKEASPA 590 Query: 256 LLLLASNGCESALLIPLTFGNHTPGALLLA-HTSSTLFSEENCQLLQHIADRIAIAVGNA 314 LL G + L G + L T+ + +S E+ L + +IA+ + Sbjct: 591 QQLLRLLGFDFIYN--LELDGEFAGFVALGQRTTGSAYSAEDLTFLNAMGQITSIALHST 648 Query: 315 DAWRSMTDLQESLQQENHQ----------LSEQLLSNLGIGD------------IIYQSQ 352 + + L E ++ + + L +L ++ I + I S Sbjct: 649 KIHQDLRRLNEEMRIKVEKIDDQRRLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSP 708 Query: 353 AMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLL 412 A+ +++ V VA S+STVL+ GE+GTGKE++A+A+H+ S R +KPLV++NCAA+ SLL Sbjct: 709 AIRSVMETVRKVANSESTVLVRGESGTGKELLAQAVHENSSRHEKPLVRVNCAALSPSLL 768 Query: 413 ESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLG 472 ESELFGH KGAFTGA GRFE+A+GGTLFLDEIGD+ L+ Q KLLRVLQER ER+G Sbjct: 769 ESELFGHVKGAFTGAHEDRVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVG 828 Query: 473 GSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHF 532 GS T+ V+VR+I AT+++L Q + + FR DL+YRLNV + LPPLR+R EDI LA +F Sbjct: 829 GSETLHVDVRLITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYF 888 Query: 533 TQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL-----HL 587 ++ A + + I I +A+ L WPGN+R+LENVIERAV+L + + L Sbjct: 889 LKRTANRLGKRISHIDPDAIEALERAPWPGNIRQLENVIERAVVLAESEVITMKDLPADL 948 Query: 588 NVRQSRLLPTLNEDSALRSSMAQLLHPTTPE------------NDEEERQRIVQVLRETN 635 ++ RL + E +RS + + + E E +++ L E + Sbjct: 949 LEQKKRLPARVFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKLALAECD 1008 Query: 636 GIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 G AA LGM R+T S++++ I+ Sbjct: 1009 G---NKAQAARLLGMPRSTYYSKLKKYDIT 1035 >UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=C5BI62_TERTT Length = 642 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 169/455 (37%), Positives = 255/455 (56%), Gaps = 24/455 (5%) Query: 214 HCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT 273 H P E + ++ + H W+ D + P+ Sbjct: 212 HTHEDGSHYPVEECPIYAAIRDG---IVHEGRQEVFWKHDGTPFPV------EFTSTPII 262 Query: 274 FGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQ 333 + GA+++ + I++RI +A R +++L+ L+ EN Sbjct: 263 ANSTIIGAVVV---------------FRDISERIETQRQLENALRELSELKARLEDENAY 307 Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L ++ L II + ++ + QQ+++VA++++ VL+ GE+GTGKE+IA+AIHQ S Sbjct: 308 LQQEYLIERNYHGIIGEGAGIKRIKQQIELVAQTEANVLVYGESGTGKELIAQAIHQASR 367 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 R DKP++++NCAAI L ESE FGH KGAFTGA+ GRFE+A+GGTLFLDE+G++PL Sbjct: 368 RADKPMIRVNCAAIAHELFESEFFGHIKGAFTGALRDRIGRFELANGGTLFLDEVGEIPL 427 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 ELQ KLLRVLQE ++ER+G +T V+VR+IAATNRDL + +FR DL++RLNVFP+ Sbjct: 428 ELQSKLLRVLQEGQLERVGEEKTREVDVRIIAATNRDLKAEADQGRFREDLYFRLNVFPI 487 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 + PLRDR EDI LLA H+ +++ R + L+QL + WPGNVREL+NV+ER Sbjct: 488 QAVPLRDRREDIGLLAAHYLEQLCHKFPRQQCKLTQRDLKQLRDYAWPGNVRELQNVLER 547 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 AV+ +R LNL L + + S+ + + + + ++ L + Sbjct: 548 AVITSRAGRLNLDLPQHNHQDNAQPTLPALNTESITETEILSDDDMQALVKHNMLAALEK 607 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + + G GAA LGMK TTL SR++R+G+ Sbjct: 608 SGWKLFGSDGAAALLGMKPTTLASRIKRMGLKPSR 642 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 157/342 (45%), Positives = 216/342 (63%), Gaps = 4/342 (1%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + L EN L +QL +II S M+ + +++ V +DST+LI GE+GTGKE+ Sbjct: 133 KSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKEL 192 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +A+AIH RR+KP V INC AIPA LLESELFGH +GAFTGA+ G+F+ A GT+ Sbjct: 193 VAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTI 252 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG +PL LQ KLLRVLQE+E+E++G S+ I ++VRVI+ATN +L + VE +FR+D Sbjct: 253 FLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRAD 312 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRLNV P+ LPPLR+R EDI LLA++F QK MN+ + +I A+ L ++ WPGN Sbjct: 313 LYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGN 372 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR-SSMAQLLHPTTPENDEE 622 VRELENVIER V LT ++ +ED + + + Sbjct: 373 VRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIAGI 432 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ER I + + G+ AA+ L +KRTTL+ +++RLGI Sbjct: 433 ERCLIKSAMGLSGGV---KARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 190/620 (30%), Positives = 297/620 (47%), Gaps = 42/620 (6%) Query: 53 LIELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRF 112 L+E L+S Y V A + Y+ + +Y VLL + I + + Sbjct: 872 LLERKNLESAKNYLNEAIKHFVEAGSNYELSLANYELAGVLLDMEEWEQAMEILKNNRKI 931 Query: 113 TSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDD 172 + ++ L ++Q + Q+ E++ + +IT + + DLD Sbjct: 932 IERYGSI--KLLEQNDILMQKISREYSSQMEEVKFEENLLNQ--FYEITQNLNTITDLDV 987 Query: 173 LIADVAREIHHFFGLASVSMVL---GDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLL 229 LI + ++L ++ ++ + + + E Sbjct: 988 LIEQSLSSLVEIANADGGMLLLHPNPSLPDAWEYRIYHNFSPEDKYHDQFQNICYEVYQN 1047 Query: 230 TQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGA-LLLAHTS 288 + +QP +++ L +PL+ +T G LL + Sbjct: 1048 NKLENIKQPHFAPSYNNI--------------------LALPLSIRKNTMGVVLLFCKSG 1087 Query: 289 STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDII 348 S FSE LL ++++I + + N L +L++ ++ + EQL SN +II Sbjct: 1088 SKYFSERIINLLSALSNQIIVIIENI--------LSANLEKSHNIIREQLSSNNIYSNII 1139 Query: 349 YQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIP 408 +S M + + ++ V + +TVL+ G +GTGKE+IARA+H S RR+K V C A+P Sbjct: 1140 GKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALHYSSNRRNKAFVAQYCGALP 1199 Query: 409 ASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREI 468 +LLESELFGH KG+FTGA +G FEIADGGT FLDEI D+ Q KLLR LQE EI Sbjct: 1200 ETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQEGEI 1259 Query: 469 ERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLL 528 +R+G ++T V+VRV+ ATN L + V+ +FR DL+YRLNV +++PPL++R DIPLL Sbjct: 1260 KRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGDIPLL 1319 Query: 529 AKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN 588 A HF K + MN+ + EA++ L +DWPGNVR+LEN IERAV L N+ + Sbjct: 1320 AIHFLDKYNKRMNKNVMGFTAEAMKVLEQYDWPGNVRQLENEIERAVTLAEPNTFIKPSD 1379 Query: 589 VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRL 648 + + + + +M +E ER+ I Q L + AA L Sbjct: 1380 FSEEVY---RHIEYSKTIAMLSGKKNLKDAIEELERKLISQSLEKFQW---NQTQAAKEL 1433 Query: 649 GMKRTTLLSRMQRLGISVRE 668 G+ R L+ +MQR + E Sbjct: 1434 GLSRQGLIKKMQRYNLYREE 1453 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 163/336 (48%), Positives = 226/336 (67%), Gaps = 11/336 (3%) Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 E + II S M+ + + + VA D++VL+ GETGTGKE +A IH LSPR Sbjct: 157 KEVVPPIPNFEGIIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHLSPR 216 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 + KP VK+NCAA+P L+ESELFGH+KGAFTGA+ G+FE ADGGT+FLDEIGD+P + Sbjct: 217 KAKPFVKVNCAALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPAD 276 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 LQ KLLRVLQE+EIER+GG+ I VNVR+IAATNR+L + + + +FR DL+YRL+VFP+ Sbjct: 277 LQVKLLRVLQEKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIM 336 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 L LR+R +DIPLL HF + A + + I ALRQLM + WPGNVREL+N+IER+ Sbjct: 337 LSALRERRDDIPLLIAHFIRLYASATGKGVSDIAPAALRQLMDYAWPGNVRELQNLIERS 396 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 VLL+R + + R+ L ++ +++ + S+ + E ER+ I+ VL++ Sbjct: 397 VLLSRESII------REVILPVSVKKETTVVSTETDIKTIV-----ELEREHILTVLKKC 445 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 N ++GP GAA L + +TL S+M++LGI R L Sbjct: 446 NHKISGPGGAAELLNLPPSTLASKMKKLGIVKRHTL 481 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 148/320 (46%), Positives = 209/320 (65%), Gaps = 8/320 (2%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +II S +M ++ + + VA S++TVLI GE+GTGKE++ARAIH S RR+ P +K+NCA Sbjct: 141 NIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCA 200 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 +P SLLESELFG++KGAFTGA + GRFE+A GT+F DEIG++ L Q KLLR +QE Sbjct: 201 NLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQE 260 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 +E +R+GG++TI VNVR++AATNR L Q V + +FR DLF+RLNV +E+PPLRDR EDI Sbjct: 261 KEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDI 320 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 PLL HF K + N+ I EA++ L+ +DWPGNVRELENV+ER++++ RG + Sbjct: 321 PLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIVP 380 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 + + E L +++ + ER+ I++ L E N A Sbjct: 381 EDIQLGATVSQQPTELEILDENLS-----LKQIISDVERKVILKALEENNWC---RTTVA 432 Query: 646 TRLGMKRTTLLSRMQRLGIS 665 L + R +L ++M+ LGI Sbjct: 433 KVLKINRRSLYAKMKELGIE 452 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 186/537 (34%), Positives = 275/537 (51%), Gaps = 26/537 (4%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLAS-VSMVLGDHRK 199 + A +E+D + + + DLD+++A++A + ++ V++VL D + Sbjct: 125 EPAEAKIERDPSALSAMYAAQKRIGAANDLDEVLAEIADAVLALVPSSTHVTVVLRDDDQ 184 Query: 200 NEKFS-------LWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQR 252 + L ++ +P + + ++ R L A + + Q Sbjct: 185 EPGAAPAAFVPVLTRVRSASGKGGPPAGPVPITRSVYRKVIKERAAVLAADA-PIEVGQS 243 Query: 253 DPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRIAIAV 311 + L+ S L +PL G G L + S + + + + L +A ++AV Sbjct: 244 ESLM----GASIRSTLAVPLWKGEEIIGVLQADNRSVPGMLNAGDLETLLVLAANASLAV 299 Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG----DIIYQSQAMEDLLQQVDIVAKS 367 NA + + +E LQ+EN L + G G DII S AM ++ Q+D V + Sbjct: 300 ANARLIKRLVLAEERLQKENSFLKGREERRRGGGGGAVDIIGNSDAMRKVIGQLDKVVDT 359 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 TVLI GETGTGKE+IA A+H S RRDK V NCAA+ SLLESELFGH KG+FTGA Sbjct: 360 RVTVLIEGETGTGKELIAAAVHYRSRRRDKLFVAQNCAALAESLLESELFGHKKGSFTGA 419 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 +G FEIADGGTLFLDEI + PL LQ KLLR LQE EI +G + VNVR++AAT Sbjct: 420 TEEKKGLFEIADGGTLFLDEITETPLSLQSKLLRALQEGEIRPVGATSPKHVNVRIVAAT 479 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 NR+L V +FR DL+YRL VFP+ LPPLR+R +DI LLA HF ++ A + + Sbjct: 480 NRNLEDEVAKGRFREDLYYRLKVFPIRLPPLRERRDDISLLAAHFLERYADEIGKPCGGF 539 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 +A+ ++++DWPGNVREL+N ++R V+ L L P + + L + Sbjct: 540 SQQAMELMVAYDWPGNVRELQNEVQRIVI-----QLEPGAFGTPELLSPRIRQVEGLVAR 594 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 D E+ +++ LR G AA LG+ R L ++++ GI Sbjct: 595 AGTPKGSLKEMMDAVEKFFLLEALR---GHNNNKTNAAKSLGITREGLHKKLRQYGI 648 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 171/508 (33%), Positives = 264/508 (51%), Gaps = 18/508 (3%) Query: 160 ITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLP 219 I+ A++ D++ L+ +V + G+ + L + S Sbjct: 17 ISVAIIHERDVEKLLENVLGILESELGMLRGTFALLFGDT---LKIEASRGLDETEKQRG 73 Query: 220 RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTP 279 GE + + + D R + + +PL Sbjct: 74 FYRMGEGITGHVAERGLSHVIPDLRKDSRFLNRTGSRHYETQ---VAFICVPLIHDGQVI 130 Query: 280 GALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQL 338 G L + + + LL+ IA+ A A+ + +E++ +EN +L + L Sbjct: 131 GTLSIDRPVDGSTDLDRDVALLEIIANITGDA---ANECIELHGEREAMLEENRKLRDML 187 Query: 339 LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKP 398 +N G+++ + M + +QV VA SD+TVLI G +GTGKE+IARAI LS R+DKP Sbjct: 188 SNN--PGELVGNCREMRQVYEQVRQVAPSDATVLIRGGSGTGKEMIARAIVNLSARKDKP 245 Query: 399 LVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPK 458 + +NCAA+P +L+ESELFGH+KGAFTGA+N GR E A+GGTLFLDE+GDL ++ Q K Sbjct: 246 FITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEAANGGTLFLDEVGDLTMQTQVK 305 Query: 459 LLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPL 518 LLR LQER R+G + + +VR +AAT+R+L +++ +FR DLFYRLN+FP+ +P L Sbjct: 306 LLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQGKFREDLFYRLNIFPITMPDL 365 Query: 519 RDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 R DI LLA+HF +KM N+ + + T A+ LMS+ WPGNVRELEN IER VL Sbjct: 366 AKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMSYHWPGNVRELENCIERGVLTA 425 Query: 579 RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 + ++ + L T ++ + + + P D ER+ I + ++ +G + Sbjct: 426 TDDCIHSYNLPPS---LQTSLSVGSVGGTPSDKIAPLEVMMDNYEREIITEAIKRNDGNI 482 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGISV 666 + A LG+ + RM +LGI + Sbjct: 483 S---AAGRDLGVSPRMMNYRMNKLGIKL 507 >UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Planctomycetaceae RepID=D2QZ64_9PLAN Length = 677 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 181/529 (34%), Positives = 266/529 (50%), Gaps = 22/529 (4%) Query: 139 EQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHR 198 A RL + R+ ++ S DL + + + + + L R Sbjct: 161 TDSPAPRLGQAATRLCRLAFEL----ASQPDLAAVAHLALSGLFESTQVDAGGVWLL-PR 215 Query: 199 KNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD-DLFLWQRDPLLL 257 N S L AS LP + L L+ + L + D L RD Sbjct: 216 GNASNSAADLSLVASRTDRLPSYHRLSAFLAATVLRDGEAVLARNIEGDSQLASRD---- 271 Query: 258 LLASNGCESALLIPLTFGNHTPGALLLAHTSSTLF-SEENCQLLQHIADRIAIAVGNADA 316 S L P+ G + L T S ++ + +AD +A+AV N Sbjct: 272 SKGEFHTTSVLCAPIRLEKKVVGMIHLYSTDSARVPDPDDLEFTLAVADNVALAVRNLHR 331 Query: 317 WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 + + + + E QL +QL + +++ S+ + + +Q+ A S +TVLI GE Sbjct: 332 QQELAENLLQTRTEVQQLRKQLGAE---SELVGSSEVLSSVQRQIARAAPSRATVLIRGE 388 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 +G GKE++ARA+H SPR+ P V +NCAA+ SLLESELFGH+KGAFTGA + G+FE Sbjct: 389 SGVGKELVARAVHYSSPRKRGPFVCLNCAALSESLLESELFGHEKGAFTGATDRKIGKFE 448 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 A GTL LDEIG++ +Q K LRVL+ ER+GGS+ I V+VRVIAATNRDL + V Sbjct: 449 SAHQGTLMLDEIGEMSPSIQAKFLRVLEGHPFERVGGSQPIKVDVRVIAATNRDLEKAVA 508 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 + FR DL++RLNV +++PPLR RPEDI LA F Q+ R + A +L Sbjct: 509 EGAFRRDLYFRLNVVEIQVPPLRKRPEDIIELAHFFLQRFNAETGRKLRGFSPAATERLQ 568 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT 616 + WPGNVREL+NVIERAV+L+RG+ + + L L S + + Sbjct: 569 QYRWPGNVRELKNVIERAVVLSRGDVVE-----PEDLHLSNLATASESGDNPSPKTSFVP 623 Query: 617 PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 D+ E++ I+ L+ TN AA LG++R+TL +++R ++ Sbjct: 624 MSLDDIEKRHILATLKATNWH---KSRAAAILGVERSTLDRKIRRYELN 669 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 160/517 (30%), Positives = 254/517 (49%), Gaps = 23/517 (4%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 V+ + + L LD + + + + ++ L D Sbjct: 6 RETELNVIFETCRVIGQALKLDQALDTILAILSSSLAMKRATITLEDEDTGYLIIRASHG 65 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 L+ + + + Q+ + L+ L+ S L Sbjct: 66 LTDAERRR--GVYRKDEGITGLIFQSADSYVVPDISKEPLFLNKTRSRLIQKESI-SFLG 122 Query: 270 IPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +P+ G L + EE+ +LL +A IA V R + + L Sbjct: 123 VPILLHGKAIGVLHVDRLFGDEVPFEEDIRLLSIVATLIAQFVS---LNRQVKLREAKLL 179 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 ++ ++ + ++ +S +M + + ++ VA S ++VL+ GE+GTGK ++A+ + Sbjct: 180 RDCSPSGKKGIEAGDRFFMVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVAQML 239 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H+LS R P VKINCA++P +LLESELFG++KGAFTGA+ + GR E A+GGT+FLDE+ Sbjct: 240 HELSIRSSAPFVKINCASLPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEV 299 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+L LQ KLLR LQ++E ERLG +RT V+VRV+AATNRDL +V + FR DL+YRL Sbjct: 300 GELTPALQAKLLRFLQDKEFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRL 359 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVFP+++PPLR R EDIP L HF +++R R I I A+ L +DWPGNVRE+E Sbjct: 360 NVFPIQIPPLRARKEDIPDLLHHFLDRISREYGRRI-GITNAAMALLAGYDWPGNVREME 418 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N++ER V++ + + +++ L M T ++ ER+ I+ Sbjct: 419 NLVERMVIMADEDEIGVNVLP------------PFLSEQMTGSGGETLSRIEKMERKEIL 466 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 L A LG+ + R+++ G+ Sbjct: 467 AALERNGW---NQTRTAKELGITLRQIGYRVRKFGLD 500 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 159/341 (46%), Positives = 215/341 (63%), Gaps = 15/341 (4%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + L +EN + QL +G+++ +S+AM++L ++ VA+ ++ VL+ GETGTGKE+ Sbjct: 122 RSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKEL 181 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +AR IH + P V I+CAA+P +LLESELFGH +GAFTGA +G+ E+A GGTL Sbjct: 182 VARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGTL 241 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG+LPL LQ K LR LQE+EI RLG +R V+VR+IAATNRDL + Q+R D Sbjct: 242 FLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWRED 301 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNV +E+PPLR+R +DIP L HF K +AI + E + M++DWPGN Sbjct: 302 LFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPGN 361 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VRELENVIERAV+L G+S+ + S L P L E SA S + E E Sbjct: 362 VRELENVIERAVVLCMGDSIAM------SCLPPKLQERSAPAPSTDGV------NLMEME 409 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ++ IVQ L +T AA LG+ R L ++M+ G+ Sbjct: 410 KRLIVQTLEKTE---QNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 166/435 (38%), Positives = 241/435 (55%), Gaps = 18/435 (4%) Query: 232 TLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTL 291 ++T P L ++ L G E +++ FG A+ + Sbjct: 40 IMETEFPDTVLLDIRLPDADGIEVMDKLKQMGIEVPVILMTAFGTTEI-AIQAMKQGAHD 98 Query: 292 FSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNL-GIGDIIYQ 350 + + L D + +AV + + L E L E+L + I Q Sbjct: 99 YLNKPLNL-----DELVLAVQKSIKM-------QRLVSEVAILREELDQETDSVDSFIGQ 146 Query: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 S+ M+D+ + + V SD TVLI GE+GTGKEV+AR IH S R +P +KINCA IP Sbjct: 147 SRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKINCATIPEQ 206 Query: 411 LLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIER 470 L+ESELFGH+KG+FTGA++ G+FEIA G +FLDEIG+LPL Q KLLRVLQE+E ER Sbjct: 207 LMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFER 266 Query: 471 LGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAK 530 +GG+++I V+VR++AATNR+L MV++ +FR DL+YRLNV ++LPPLR+R EDI LL Sbjct: 267 VGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLIN 326 Query: 531 HFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVR 590 +F +K AR N+ I I EA+ + WPGNVRE++NV E+AV++ R + L L Sbjct: 327 YFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPL 386 Query: 591 QSRLLPTLNEDSALRSSMAQLLHPTTPE-NDEEERQRIVQVLRETNGIVAGPRGAATRLG 649 L + + S+ + + E E+Q I++ L E N A LG Sbjct: 387 IGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVEKQVILKSLNENNWNRQN---TAKALG 443 Query: 650 MKRTTLLSRMQRLGI 664 + R +L ++M+ + Sbjct: 444 LNRRSLYAKMKEYDL 458 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 165/393 (41%), Positives = 241/393 (61%), Gaps = 15/393 (3%) Query: 273 TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL--QESLQQE 330 PG +++ T L D I + + ++ + +QE Sbjct: 70 KLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKALAHKRTEQE 129 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 N +L EQ+ + + D++++S AM+ + ++ VA +D+TVLI GE+GTGKEV+ARAIH Sbjct: 130 NVRLKEQIEEHAHV-DLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARAIHA 188 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 LS RR P+V ++C A+ +LLESELFGH+KGAFTGA +G+FE+A+GGT+FLDEIGD Sbjct: 189 LSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFLDEIGD 248 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 + L+ Q LLRVLQEREI R+GG++ I V+ R++AATN+DL +++E+ FR DLFYRLNV Sbjct: 249 ISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLFYRLNV 308 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENV 570 F +ELPPLRDR EDIPLL HFT+K A MN+ + + + A+ L + WPGNVRELEN Sbjct: 309 FRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPGNVRELENA 368 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 +ERA+++ + L V + + T++ + T ++ E++ I+ V Sbjct: 369 VERAMVVAQEPELRETDFVLKVKAAATMSSTNG---------TGTPKTLEDIEKEHILHV 419 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 L ETN AA L + R TL +++R G Sbjct: 420 LDETNW---NQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 172/345 (49%), Positives = 232/345 (67%), Gaps = 3/345 (0%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Q+SL+ EN L +++ S G II S A++ +LQQ+++VA + + VLI GE+GTGKE+ Sbjct: 158 QKSLELENEYLLDEIRSER-FGAIIASSPALKKVLQQIEVVAPTQANVLILGESGTGKEL 216 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARAIH LS R+ KPLV++NCA+IP L ESE FGH +GAFTGAI GRFE+A+GG+L Sbjct: 217 VARAIHDLSERKGKPLVRVNCASIPKELFESEFFGHVRGAFTGAIKDRVGRFELANGGSL 276 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG++PL+LQ KLLRVLQE + ER+G RT VNVR+IAATNRDL + +FR D Sbjct: 277 FLDEIGEIPLDLQSKLLRVLQEGQFERVGEDRTRTVNVRIIAATNRDLLTEAKAGRFRLD 336 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRL+VFP+E+P LR+RPEDI LA+HF ++ A + + +R+L +DWPGN Sbjct: 337 LYYRLSVFPIEIPALRERPEDIGPLAEHFVKQSANRLGVTRPRLTKADVRELEGYDWPGN 396 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VREL+NV+ERAV+L R L L R P A S+ P+ E ++E Sbjct: 397 VRELQNVVERAVILARSGRLKFELGNNSERPFPPSARVPAPDGSIDH--QPSLGELKQQE 454 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 +Q I+ L++ G + G GAA L MK TTL SR+QR G+ + Sbjct: 455 KQVILNALKQAQGRIYGEEGAAAILSMKPTTLASRIQRYGLKKAD 499 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 161/420 (38%), Positives = 251/420 (59%), Gaps = 10/420 (2%) Query: 248 FLWQRDPLLLLLASNGCESALLIPLTFGNHTPGAL-LLAHTSSTLFSEENCQLLQHIADR 306 F + ++ + + P F ++ P + ++ + +E + A+R Sbjct: 202 FFNEESAEVIESLVEKASNQISKP--FSDYIPNVIKVIGSNDTVTINEGTISAYGNKAER 259 Query: 307 I-AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 + + N + D L + L +++ DI+ + M+++L V VA Sbjct: 260 FYTLILRNIEDRLEAEDQISFLTNQTQYLEDEIKELTSGYDIVAEDPKMQNVLSLVKHVA 319 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 +D+TVLI GETGTGKE+++RAIH+ S R DKPL++INC AIP +L+ESELFGH KGAFT Sbjct: 320 PTDATVLINGETGTGKELVSRAIHEASNRSDKPLIRINCGAIPTNLIESELFGHKKGAFT 379 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA + +GRF +AD GT+FLDEIG++P+ELQPKLLRV+QE E + +G S TI VNVR+IA Sbjct: 380 GATSDRKGRFLLADKGTIFLDEIGEMPIELQPKLLRVIQEGEFDPVGSSETIKVNVRIIA 439 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 AT+RDL Q D +FR DL+YRLNVFP+E+P LR R ED+ L+A ++ +N+ + Sbjct: 440 ATHRDLLQHAADGKFREDLYYRLNVFPIEVPALRHRAEDVCLIAGEMINHFSKKLNKPMV 499 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 + LM + WPGNVREL+N+IERA+++++ ++N+ ++P + D Sbjct: 500 ELSDIDKSHLMDYHWPGNVRELQNLIERAIIISKSGTINI------KDVIPKMQSDEEHP 553 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + T+ E + E++ I++ L++T ++G GAA L + TTL S+++ LG+ Sbjct: 554 PKTLKDKVYTSQELLKLEKENILKALKQTRWKISGKNGAAELLQLPATTLASKIKVLGLE 613 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 165/412 (40%), Positives = 240/412 (58%), Gaps = 17/412 (4%) Query: 257 LLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADA 316 L L + + L + +H P ++ A + E + ++ A + + D Sbjct: 52 LKLPNMDGQEFLSLIRRQNSHVPVVMMTAFGNV----ETAVEAMKAGATDFLLKPFSLDH 107 Query: 317 WRSMTD---LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 + D +L++EN +L L +I+ +S AM+++ ++ V S +TVL+ Sbjct: 108 LMQVVDKALEVRALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLL 167 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 GE+G GK++IARAIH SPR+D+PLVKINC AIP +L+ESELFG++KGAFTGA T G Sbjct: 168 TGESGVGKDLIARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPG 227 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 +FE AD GT+FLDEIGD+P +Q KLLRVLQERE ERLG + T ++VR++AATN+DL Sbjct: 228 KFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRA 287 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 +E FR DL+YRLNV PL +PPLR+R DIP LA HF K+A +++I + Sbjct: 288 ALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGME 347 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH 613 +LM++ WPGNVRELENVIER++++ G L+ +S P + Sbjct: 348 KLMAYHWPGNVRELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNH-------FL 400 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 P D+ E++ I + LR +G AA LG+ R L R+ ++G+ Sbjct: 401 PEGLSLDQYEQEIIREALRRADG---NKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LPT8_SYNAS Length = 645 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 158/359 (44%), Positives = 227/359 (63%), Gaps = 6/359 (1%) Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 A+ + L+E L+ EN L E++ G G+II S+A+++ + + VA++ TV Sbjct: 293 ELIRAYEEIQALKEKLEAENTYLREEVGLQHGAGEIIGDSEAIKNTMHRALQVARTSVTV 352 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 L+ GETGTGK + A +HQ S R DKP V +NCA +P +L+ESELFG +KGAFTG+ Sbjct: 353 LLTGETGTGKGIFAHFLHQNSGRADKPFVHVNCAGLPHNLIESELFGREKGAFTGSTARQ 412 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 GRFE+A GGT+FLDEIG+LPLELQ KLLRV+++ + ERLG +I V+ R+I +TNR+L Sbjct: 413 IGRFELAHGGTIFLDEIGELPLELQAKLLRVIEDGKFERLGSPHSIKVDARIITSTNRNL 472 Query: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 + + +FR DLF+RL+VFP+ +PPLR+R DIPLL + FT K ++ + I IP + Sbjct: 473 EDEISEGRFREDLFFRLSVFPIIIPPLRERKADIPLLVEFFTHKCSKVHRKNIRHIPAQT 532 Query: 552 LRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQL 611 ++ L ++ WPGNVREL NVIERAV++T+G L L + + S + Sbjct: 533 MKSLENYGWPGNVRELMNVIERAVIVTQGTELQLAGQLSAHSI------RSRKERGIEGS 586 Query: 612 LHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 P + ER+ I++ L+E + GP GAA RL M +TL +RM++L I E L Sbjct: 587 EKPAFKGLNGVERRHILETLQEAGWKIEGPGGAAQRLEMNPSTLRTRMKKLQIKRPETL 645 >UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRC3_9SPHI Length = 657 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 174/553 (31%), Positives = 273/553 (49%), Gaps = 22/553 (3%) Query: 129 PVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLA 188 L L + ++ L ++ R L++I+ + L+ +AR I Sbjct: 112 VALDIALYLHKNRL-ESKLRQEALLERQLLEISQ---NALNAKQTFLQIARAIRTVIPFD 167 Query: 189 SVSMVL--GDHRKNEKFSLWCSDLSASHCACLPRCMPGESV---LLTQTLQTRQPT---- 239 + + + L + + L+ ++ Sbjct: 168 LIVCGTRPFTASRFGDYGYLRVGLDDYQFIGRDELLTISGLKSDALSNIIENSHTDTHVA 227 Query: 240 -LTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQ 298 + A + L L ES L+ P+ + + ++++ + Sbjct: 228 TYNNNATTDVVHLTPLQKLWLTIYNLESYLVFPVALSDGSWVHYTFYSRRREMYTQSHLA 287 Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQ--QENHQLSEQLLSNLGIGDIIYQSQAMED 356 +L + A + L +++ + + S II + Sbjct: 288 MLTGFISSLTKATEKLVQSDLSSTYTTRLSVDRKHDRAQDSQGSVPKFKGIIGNHPLLLA 347 Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 L V VA +++VLI GE+GTGKE IA+AIH LS R+ P +K+NCAAIPA+L+ESEL Sbjct: 348 ALDLVTQVAPYNTSVLILGESGTGKESIAQAIHSLSVRKTGPFIKVNCAAIPAALIESEL 407 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FGH+KGAFTGAI +G+FE + GTLFLDEIG++PL++Q +LLRVLQE+EI+ +GG Sbjct: 408 FGHEKGAFTGAIEKRKGKFEQSHEGTLFLDEIGEMPLDMQVRLLRVLQEKEIDPVGGKSP 467 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 V+VRV+AATNR+L + V + +FR DL+YRLNVFP+ LPPLR+R DI L+ + + Sbjct: 468 KKVDVRVVAATNRNLEREVAEGRFRLDLYYRLNVFPITLPPLRERKSDIQALSVYVANRF 527 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP 596 + ++ + I + +L + WPGN+RELENV+ER+V+L G S L ++QS L Sbjct: 528 CKEFSKDFNGISAGMMDELEGYTWPGNIRELENVLERSVILNDGQS---ELELKQSLLGT 584 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 T D + L E ER+ ++ VL+ T G++ G GAA L +K TTL Sbjct: 585 T---DKVPSKVAIETLGDVRRIQRETEREYLISVLKNTKGLIRGANGAAELLHIKPTTLE 641 Query: 657 SRMQRLGISVREV 669 +R+ +LGI ++ Sbjct: 642 ARLAKLGIQREDL 654 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 158/367 (43%), Positives = 225/367 (61%), Gaps = 11/367 (2%) Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 D + I V A +R + ++N ++ +L + I ++ S A +LQ VD V Sbjct: 108 DELDITVSKALQFRDIL-------KDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSV 160 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 +S++T+L+ GE+GTGKE++ARAIH+ R DKP V +NCAAIP LLESE+FGH KGAF Sbjct: 161 RESNATILLTGESGTGKEMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAF 220 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA+ GRF+ AD GTLFLDE+GD+PL LQ K+LR LQER IE +G R V+VRVI Sbjct: 221 TGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVI 280 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 AATN++L + V +++FR DL+YRLNVFP+ LP LR+R EDI LLA+HF + + I Sbjct: 281 AATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRI 340 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLNEDSA 603 EAL+ + S+ WPGN+REL+N +ERA ++ G + L E SA Sbjct: 341 SGFSPEALQAMASYAWPGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSA 400 Query: 604 LRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 S Q+ E E+ I+ L+++NG+ A AA +G+ + R+++LG Sbjct: 401 AISVGPQVPSDLEAALAEVEKAYILAALQQSNGVQA---AAAQLIGISERSFWYRLKKLG 457 Query: 664 ISVREVL 670 I V +++ Sbjct: 458 IQVDKIV 464 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 157/430 (36%), Positives = 239/430 (55%), Gaps = 8/430 (1%) Query: 239 TLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQ 298 + D L + SN + + + L + Sbjct: 47 DVLRYLDKERFHLLITDLKVPGSNSIDFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEG 106 Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 + ++ + R++ SL EN L + L G+II S ++ + L Sbjct: 107 VFDYLVAPFDNDILELAVKRALK--VSSLTIENKNLRKALELQYNFGNIIGNSPSVVETL 164 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 + V V ++DSTVL+ GE+GTGKE+++RAIH S R+ P V +NCAAIP +LLESELFG Sbjct: 165 RLVGEVTRTDSTVLVTGESGTGKELVSRAIHYNSDRKCGPFVALNCAAIPENLLESELFG 224 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 ++KGAFTGA T +GRFE+A GGT FLDEI ++ +Q K+LR+++ +E+ERLGG+ TI Sbjct: 225 YEKGAFTGAEKTKKGRFELAAGGTFFLDEISEMSAAVQAKVLRIIESKELERLGGTDTIK 284 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 V+VR+I ATNRDL QMV++ +FR DL+YR++VFP+ LP LR+R DI L+KHF + Sbjct: 285 VDVRIICATNRDLVQMVKEGKFRDDLYYRISVFPIMLPALRERSGDIIPLSKHFVNHFSA 344 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL---NLHLNVRQSRLL 595 M + + +E + L+ W GN+REL+N+IERAV+L + + +L ++ Sbjct: 345 KMGKTPIVLSSEVEKILIKHKWEGNIRELQNIIERAVILCKNGVIRTEHLPTSIVHGYTP 404 Query: 596 PTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 P LNE+ + +S+ + P D+ E+Q + + L + + AA LG+ R T Sbjct: 405 PELNENISQNNSVNFDIPPNGLSLDDLEKQLVAKALERSKNNI---TKAAKLLGLTRGTF 461 Query: 656 LSRMQRLGIS 665 R+Q+ GIS Sbjct: 462 RYRLQKYGIS 471 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 184/461 (39%), Positives = 246/461 (53%), Gaps = 17/461 (3%) Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 S +P + + + Q + + L+ DP L S + +PL Sbjct: 61 SRGRFVPDYEYPIHGTPCEAVISGQRLVVVPERVVELYPDDP---DLPGQDAVSYMGMPL 117 Query: 273 T-FGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 G L + + + R A + R + L + E Sbjct: 118 RDTDGTVLGNLAVLDSRPLEADATCQAVFGIFGARAAAELARLRRDRRLRALND----EA 173 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 L +L S G +I+ +S A+ LL + VA S++TVLI GETGTGKE+IARAIH+ Sbjct: 174 AALRAELGSLRGFEEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIHRH 233 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S R PL+K+NCAAI A+L ESE FGH+KGAFTGA GRF++ADGGTLFLDE+G++ Sbjct: 234 SRRSQGPLIKVNCAAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGEM 293 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 PL+LQ KLLRVLQE E E +G RT+ V+VRVIAAT+RDL QMV + FR DL YRLNVF Sbjct: 294 PLDLQAKLLRVLQEGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNVF 353 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 PL PPLR+R ED+ LLA+ ++AR + + +L + WPGNVRELENVI Sbjct: 354 PLHAPPLRERGEDVVLLAEAIATRLARQEGATLAPLSPADRARLKAHPWPGNVRELENVI 413 Query: 572 ERAVLLT----RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 ERA + G LNL + S + P +A ++ T E + ER I Sbjct: 414 ERAWITGTDTPDGRVLNLVRALPGSEVTPRTPGLAADPDAVF-----TAAEMLQMERSNI 468 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + L ++G GAA LG+ TL SRM+ LGI + Sbjct: 469 ERALVSCQWKLSGVGGAARLLGLHPNTLASRMKSLGIRRPD 509 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 175/515 (33%), Positives = 273/515 (53%), Gaps = 20/515 (3%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L T A+ ++L ++ + R + + + L + E D++ Sbjct: 7 LLRSPTQALNEGMELRSVVNSILRMLAERPAMVHPYLTLVEPESGESHLEEAPDMTPEQQ 66 Query: 216 ACL-PRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTF 274 + PR G ++ + +Q+ + + H + D FL + L + S + PL Sbjct: 67 RRIRPRHGEG---IVGRVVQSGRTRVVHGSSDSFLNR-----LGRSEPEGMSFICAPLRQ 118 Query: 275 GN-HTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH 332 + G L + H + + + L++ +A+ + A+ + R +E+++ EN Sbjct: 119 RDGEIVGTLAVDHRGQDPAALQGDVLLIEALAEMLGRAI---ELRRRSMAEREAVELENQ 175 Query: 333 QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLS 392 +L +L + +II ++M + ++ V+ +D+TVL+ GE+GTGKE++ARAIH S Sbjct: 176 RLRAELRGRFRVANIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFAS 235 Query: 393 PRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLP 452 PR + P V +NCAA+P LESELFGH++GAFTGAI +GRFE+ADGGTLFLDEIG+L Sbjct: 236 PRAEAPFVAVNCAALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGELR 295 Query: 453 LELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFP 512 Q KLLRVLQER ER+GG+ T +VRV+ AT+ DL + +FR DL+YRLNVF Sbjct: 296 PHTQVKLLRVLQERRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVFE 355 Query: 513 LELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIE 572 + LPPLR+R EDI LA F ++ + I +A R L++WDWPGNVRELEN IE Sbjct: 356 IMLPPLRERGEDILALADFFVERYGPRQRPPVTRIGHDAARHLLAWDWPGNVRELENCIE 415 Query: 573 RAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 RAVLLT + +L +R + + S + ER+ + + Sbjct: 416 RAVLLTNDGVIEAEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILER 475 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 L ++ G A AA LG+ + R+++ + Sbjct: 476 ALADSGGNRAS---AARALGISERRMGLRVKKYRL 507 >UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 Tax=Burkholderiales RepID=B1Y713_LEPCP Length = 593 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 170/590 (28%), Positives = 266/590 (45%), Gaps = 79/590 (13%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLG--DHRKNEKFSL 205 E+ + +I + + LD+ + GL+ V +V+ D + + Sbjct: 9 ERSHVELITIYEICRILGASLDIGRTFRASLNVLAAHLGLSRVMIVMAPDDRDGEARLRV 68 Query: 206 WCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE 265 S + GE V + + P + + ++ Sbjct: 69 HSSVGLDQEQERRGQWHYGEGV-IGHVYASGMPVVVPDVAQAAEFIDRTGAFGAQADRMM 127 Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 + +++PL G L S ++ ++L A +A A A ++T+ Sbjct: 128 AFVVVPLKTDRAVVGVLAAQREVSGGVRLSDDQRILTMAATLMAQA---ASLHGAVTEEH 184 Query: 325 ESLQQENHQLSEQL----LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 + LQ E +L + L + +++ S+ M+ + +V A + +TVL+ GE+GTG Sbjct: 185 KRLQLETTRLQKALAPEPRGRYTLDNVVGVSRGMQQVFSEVHQAAPARATVLLRGESGTG 244 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE IARA+H LSPR+D P +K+NCAA+ SLLESELFGH++GAFTGA +GRFE A Sbjct: 245 KEAIARALHYLSPRKDAPFIKVNCAALTESLLESELFGHERGAFTGAAGDRKGRFEQAHT 304 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDE+GD+ Q KLLRVLQERE ER+GG+R I V+VR+I ATNRDL +MV+ ++ Sbjct: 305 GTLFLDEVGDISASFQAKLLRVLQEREFERVGGNRAIKVDVRLICATNRDLEKMVKRGEY 364 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R+DL+YR+NV + LPPLR+R +DIP L HF + + R + I +A+ L W Sbjct: 365 RADLYYRINVVSIFLPPLRERRDDIPALVSHFVDRFNKENRRKL-RIAGDAMEVLSHCYW 423 Query: 561 PGNVRELENVIERAVLLTRGNS-----------------------------LNLHLNVRQ 591 PGNVRELEN IER + G+ +++ ++ Sbjct: 424 PGNVRELENCIERTATMANGDLIRGVSFPCRHNRCLTQTLHHLEKDDAVAPISMPTSLHI 483 Query: 592 SRLLPTLNEDSALRSSMAQLLHPTTP---------------------------------- 617 LP + S+ + Sbjct: 484 PARLPIRESPRPVPGSIPASAAAASADPDDDWLDDEADGGDDVLRIGPTEHLTGTPRQFG 543 Query: 618 -ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 E + ER+R++ + + + A AA L + L +++ I V Sbjct: 544 NEPPDGERERLIWAMEQCAWVQA---KAARLLHVTPRQLGYALRKYNIEV 590 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 166/420 (39%), Positives = 242/420 (57%), Gaps = 25/420 (5%) Query: 245 DDLFLWQRDPL-LLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHI 303 D+ + Q D L LL A A + +T A+ + + F + Sbjct: 53 TDVRMPQMDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLD----- 107 Query: 304 ADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLLQQVD 362 AD++ + +G + SL+QE L +Q+ S DII +S ++ + + Sbjct: 108 ADQVLVTLGKVLE-------KRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIR 160 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 A + +TVLI GE+GTGKE+IA+A+HQ SPR+DKP ++++CAA+ +LLESELFGH+KG Sbjct: 161 RAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKG 220 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 +FTGA+ GRFE+ADGGTLFLDEIG++ +Q KLLRVLQ+RE ER+GG++T+ V+VR Sbjct: 221 SFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVR 280 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 ++AAT+RDL V+ +FR DL+YRLNV + LPPLRDR D+P L HF +K + + Sbjct: 281 IVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGK 340 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 + + L+ L+S DWPGN+RELEN IERAV+L +G L+ L P L Sbjct: 341 QVRGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQELSTD------DLPPVLRGPR 394 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 +S L+ T ER+ I++ L G + AA LG+ + R++ Sbjct: 395 PHGTSTGALIPGATLA--AIEREAILRTLEMVQGSTS---RAAEVLGISVRKIQYRLKEY 449 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 218/344 (63%), Gaps = 10/344 (2%) Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 + + +L +EN L ++L + II +S+ M +L V +++TVLI GE+GTGK Sbjct: 117 EERMNLIKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGK 176 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E+IARAIH SPR+DKP + INCAAIP +L+ESELFG++ GAFTGA G E AD G Sbjct: 177 ELIARAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKG 236 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDEI ++PL Q KLLRVLQ++E+ ++G T V+VR+IAATN++L + VE +FR Sbjct: 237 TLFLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFR 296 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL+YRL V +E+PPLR+R EDIP L F +K ++ + ++ I +AL L+++ WP Sbjct: 297 EDLYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWP 356 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GN+RELE+VIERA+++ + + + + R++ ++ + +E Sbjct: 357 GNIRELESVIERAIIICEKDKITFNDIQDELRVI-------TPKNLFDIDIPDEGINYEE 409 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 E++ I + L ++N ++A AA LGM T R+++ G+S Sbjct: 410 LEKELIKKALIKSNFVIA---KAARLLGMSYDTFWYRLKKFGLS 450 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 153/363 (42%), Positives = 224/363 (61%), Gaps = 16/363 (4%) Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 +++ + V A A + QEN L +L G+II +S AM ++ + V Sbjct: 107 EQLILFVKQALAMYRVV-------QENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKV 159 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 A +++TVLI GE+GTGKE++A++IH S R+D P V +NCAA+ S+LESELFGH+KGAF Sbjct: 160 APTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAF 219 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA +GRFE+ADGGTLFLDEIG++ LQ KLLRVLQE+ ER+GG + I V++R+I Sbjct: 220 TGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLI 279 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR--HMNR 542 AATNRDL + VE+ FR DLFYRLNV P++LPPLR+R +DIPLL HF QK A Sbjct: 280 AATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGES 339 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 + + + R + WPGNVRELENVIERA++L ++++++ R+ T + + Sbjct: 340 RVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAISVNDLPREL----TRSVSN 395 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 L + E+ I + + ++ + + AA LG+ ++ L ++++ Sbjct: 396 TLHMEGIPVDATLYETLSMVEQAMIKRAMLMSDNVQS---HAAQILGIGKSGLNQKIKKF 452 Query: 663 GIS 665 G+ Sbjct: 453 GLD 455 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 163/415 (39%), Positives = 238/415 (57%), Gaps = 17/415 (4%) Query: 264 CESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA----VGNADAWRS 319 + L++P G G + A+ + + D I + Sbjct: 49 VVTDLVMPKVGGMEVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAE 108 Query: 320 MTDLQESLQQENHQLSEQLLSNL-GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 ++ + + N + ++ II S ++++ + +D VA + STVLI GE+G Sbjct: 109 LSSVVAKAAKTNESARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESG 168 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 TGKE+IA A+H S RRDKP +KINCAAIP +LLESELFG+++GAFTGA+ + GRFE+A Sbjct: 169 TGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELA 228 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 D GTLFLDEIG++P+E+Q KLLR +QE E ER+GG +T V+VR++AATNRDL +E Sbjct: 229 DEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAG 288 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 +FR DL+YRL V P+ LP LR+R D+P+LA+HF +K R +N+ I+ I +A+ L + Sbjct: 289 RFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGY 348 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTP- 617 WPGN+RELEN+IER +L G + R + + L S++A + PT Sbjct: 349 AWPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEV 408 Query: 618 --------ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + E ER IV+ L ET G V AA L + R +L ++M+ G+ Sbjct: 409 GLKDIVRMKAAELERDLIVKKLEETGGNV---TRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 153/341 (44%), Positives = 215/341 (63%), Gaps = 7/341 (2%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 ++ EN QL QL G+ II S AM+ + +++ VA S +TVL+ GE+GTGKE++ Sbjct: 125 RKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELV 184 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A AIHQLSPR++ P V ++CAA+ LLESELFGH+KGAFTGAI GRFE A GTLF Sbjct: 185 AHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTLF 244 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG++ L Q KLLR L E+ I+R+G ++ + V+VRVIAATN++L +MVE+ +FR DL Sbjct: 245 LDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDL 304 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 F+RLNV + +PPLR+R EDIPLLA+ F + A + ID + EA++ L+ +DWPGNV Sbjct: 305 FFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPGNV 364 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 REL+ IE V+L +G + + R+ L S P E E+ Sbjct: 365 RELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESS----EPDCFNLKEAEK 420 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + I+ LR G AA +LG+ R TL ++++ ++ Sbjct: 421 RLILHALRVCQGK---KTSAAKKLGISRKTLQRKIKQFELT 458 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 150/359 (41%), Positives = 211/359 (58%), Gaps = 18/359 (5%) Query: 310 AVGNADAWRSMTDLQESLQQ-----EN--HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 AV + + +L E L++ EN +L + S DII S + + + Sbjct: 213 AVCVFQHFTDIMNLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAE 272 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 A+S+STVLI GE+GTGKE++A AIH S RR+ P +K+NCAAIP +LLESE FG+ KG Sbjct: 273 KSAQSNSTVLILGESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKG 332 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 AFTGA+ + G+FE+A GGT+FLDEIGD+ L LQ KLLRVLQE E ER+GG++TI V+VR Sbjct: 333 AFTGAVKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVR 392 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 VIAATNR+L +++ +FR DL+YRLNV + +PPLR R ED+P L H + R + + Sbjct: 393 VIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGK 452 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 + I +A L S+DWPGNVRELENVIER ++ L ++ Sbjct: 453 NVKGISKDAEEVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQF------- 505 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 M+ ++ E I + + + V G R AA L + TL +++++ Sbjct: 506 ----RMSSERDVDLMPIEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 148/331 (44%), Positives = 213/331 (64%), Gaps = 18/331 (5%) Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 LS++ SN +I +S M +L VA + + VL+ GE+GTGK V+A+ IH S Sbjct: 218 LSQEAASNKS--RLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSS 275 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 RRDKP VKINCAAIP +LLESELFG+ KGAFTGA+ G+ E+ADGGTLFLDEIG+LP Sbjct: 276 RRDKPFVKINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPT 335 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 LQ KLL ++QE+E ERLG ++T V+VR+IAATN+DL Q+V++ +FR DL+YRL V + Sbjct: 336 YLQSKLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISI 395 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 ++P LR+R EDIP L +F ++ N+ I I EA+R L+++D+PGN+RELEN+IER Sbjct: 396 KVPALRERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIER 455 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 AV+L +G + + + ++L + + +E+Q+I++VL Sbjct: 456 AVILAKGKFIEVSDLPDEIVY-------------NTKILTQNDLDEEIDEKQKILRVLES 502 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 N AA L + R TL ++++ G+ Sbjct: 503 VNW---NKSKAAKILNIDRVTLWRKLKKYGL 530 >UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobiales RepID=NIFA_AZOC5 Length = 615 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 170/569 (29%), Positives = 277/569 (48%), Gaps = 67/569 (11%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN---EKFSLWCSDLSAS 213 + +I+ + + L+ +A+V + + + + D + + W +++ Sbjct: 56 VYEISKILTAPRRLEVTLANVVNVLSSMLQMRHGMICILDSEGDPDMVATTGWTPEMAGQ 115 Query: 214 HCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT 273 A +P+ + Q + T+ P + L+ L S + +P+ Sbjct: 116 IRAHVPQKA------IDQIVATQMPLVVQDVTADPLFAGHEDLFGPPEEATVSFIGVPIK 169 Query: 274 FGNHTPGALLLAH--TSSTLFS-EENCQLLQHIADRIA--------IAVGNADAWRSMTD 322 +H G L + + F +E+ + L +A+ + +A Sbjct: 170 ADHHVMGTLSIDRIWDGTARFRFDEDVRFLTMVANLVGQTVRLHKLVASDRDRLIAQTHR 229 Query: 323 LQESLQQENHQLSEQLLSNLGIG--DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 L+++L++E ++ I+ S ++ L+ +VA+S+STVL+ GE+GTG Sbjct: 230 LEKALREEKSGAEPEVAEAANGSAMGIVGDSPLVKRLIATAQVVARSNSTVLLRGESGTG 289 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE+ ARAIH+LSPR+ KP VK+NCAA+P S+LESELFGH+KGAFTGA+N +GRFE+A G Sbjct: 290 KELFARAIHELSPRKGKPFVKVNCAALPESVLESELFGHEKGAFTGALNMRQGRFELAHG 349 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDEIG++ Q KLLRVLQE E ER+GG+RT+ V+VR++ ATN++L + V +F Sbjct: 350 GTLFLDEIGEITPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVCATNKNLEEAVSKGEF 409 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R+DL+YR++V PL LPPLR+RP DIP LAK+F + + + + A+ L + Sbjct: 410 RADLYYRIHVVPLILPPLRERPGDIPKLAKNFLDRFNKENKLHMM-LSAPAIDVLRRCYF 468 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSR--LLPTLNEDSALRSSMAQLLHPTTPE 618 PGNVRELEN I R L + H S L L + SA + M + TP Sbjct: 469 PGNVRELENCIRRTATLAHDAVITPHDFACDSGQCLSAMLWKGSAPKPVMPHVPPAPTPL 528 Query: 619 N---------------------------------------DEEERQRIVQVLRETNGIVA 639 + E+++++Q + + + A Sbjct: 529 TPLSPAPLATAAPAAASPAPAADSLPVTCPGTEACPAVPPRQSEKEQLLQAMERSGWVQA 588 Query: 640 GPRGAATRLGMKRTTLLSRMQRLGISVRE 668 AA L + + +++ I ++ Sbjct: 589 ---KAARLLNLTPRQVGYALRKYDIDIKR 614 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 149/372 (40%), Positives = 223/372 (59%), Gaps = 14/372 (3%) Query: 297 CQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMED 356 +L + AV M L L+Q L+ L I+ S+ M++ Sbjct: 103 AAVLSDDQGQTMGAVEIVTDISEMDRLDRQLRQ----LTRTLDEESSFQGIVGHSRQMKN 158 Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 L + V+ A+SD V ICGE+GTGKE++A+AIH LSPR ++P +++NCAA+ SLLESEL Sbjct: 159 LFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESEL 218 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FGH KGAFTGA+ +GRFE A G +FLDEIGDLP+ +Q KLLRVL+ + ER+G +RT Sbjct: 219 FGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRT 278 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 I V++R I ATN++L ++ FR DLFYR+NV P+ LPPLR+R ED+P L F +++ Sbjct: 279 ISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRL 338 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP 596 +R + I + EA+R M + WPGNVREL++ +E + +L G+ + +S LP Sbjct: 339 SRKNKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGDRI-------RSENLP 391 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 +D L + ++Q +++ L++++G AA LG+ R T+L Sbjct: 392 EYLKDGGNDFQAVDLPPAPAENLQQRQKQELIEALKQSSG---NKSQAARLLGINRVTVL 448 Query: 657 SRMQRLGISVRE 668 +RM++ GI ++ Sbjct: 449 NRMRKYGIDLQR 460 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 156/405 (38%), Positives = 222/405 (54%), Gaps = 19/405 (4%) Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADR---IAIAVGNADAWRSMTDLQES 326 +PL L + E NC + + R IA+ G A+ + L + Sbjct: 339 LPLPTEEEIREILAYTDKFTPE-DELNCGACGYNSCREKAIAVYQGLAEIDMCLPFLLKK 397 Query: 327 LQQENHQLSE----QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 + E + + I Q++ + ++ + ++ A SD VLI GE+G GKE Sbjct: 398 TRGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKE 457 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGG 441 + AR IH LS R DKP V INCAAIP +LLESELFG+++GAFTGA + G+ E ADGG Sbjct: 458 IAARTIHYLSERADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGG 517 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDEIGD+PL +Q KLLR +Q RE ER+G + V++R+IAATN+ L ++V++ +FR Sbjct: 518 TLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFR 577 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL+YRLNVF + +PPLR+R +DIPLL F + A + +EA+ LM++ WP Sbjct: 578 MDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWP 637 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GN+REL+NVIERA L GN + + LP AL + E Sbjct: 638 GNIRELQNVIERAYYLAEGNLI-------KPEHLPAQLTSKALSGERITKITTFKEAVAE 690 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 E++ I++ L+ TN A LG+ R TL +++ GI Sbjct: 691 VEKKLIIEGLKATN---YNKLACAKLLGIPRATLYQKIKEYGIEA 732 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 171/477 (35%), Positives = 251/477 (52%), Gaps = 31/477 (6%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 + L + R+ E + + + + + + E + Q + + A D L Sbjct: 196 AVLALKEGRELELVTHRVRNGGPATYHKVSQFVSSEVLSDRQAI-----LAENVATDRML 250 Query: 250 WQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIA 308 RD +A S + P+ + G L L T + ++ + +A + Sbjct: 251 KDRD----SIAELKVASLICAPIMADDKVLGLLHLYRTIGHAPLNADDLEFTLAVARHLG 306 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 Q SL EN L QL +I+ +S ++ + QV VA++ Sbjct: 307 TVWHRF-------SRQASLSAENRSLRSQLKIE---SEIVGESAVLQQIESQVVRVAETR 356 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 +TVL+ GE+G+GKE++ARAIH SPRR+ + +NCAA+ +LLESELFGH+KGAFTGA Sbjct: 357 ATVLVRGESGSGKELVARAIHLHSPRREGAFICLNCAALTETLLESELFGHEKGAFTGAT 416 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 G+FE AD GT+FLDEIG++ L Q K LRVL+ ER+GG+ I V+VRV+AATN Sbjct: 417 ERMVGKFEAADNGTIFLDEIGEMALSTQAKFLRVLEGHPFERVGGNTAIKVDVRVVAATN 476 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 R L + V FR DLFYRL V L++PPLRDR +D+PLLA+HF ++ AR R Sbjct: 477 RPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDRLDDVPLLAEHFLKRFARETARKFKGFT 536 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 EAL +L ++ WPGNVREL NVIERAV L G L+ + +AL Sbjct: 537 PEALDKLRAYRWPGNVRELRNVIERAVALGNGPQLDAADIWLSGLDVGAPVVSAALVYKP 596 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + +E E++ I++ L+ T+ AAT LG++R+TL ++ R G++ Sbjct: 597 ETI--------EEVEKRHILETLKHTDW---NKSRAATILGIERSTLDRKIDRYGLT 642 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 154/352 (43%), Positives = 212/352 (60%), Gaps = 11/352 (3%) Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V + LQ++ L E++ +I+ + + + + V A + +T Sbjct: 117 VNAVLVVLEKALEKLRLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRAT 176 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+ A+A+H+ SPR DK +K+NCAA+ +LLESELFGH+KGAFTGAI Sbjct: 177 VLILGESGTGKELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGR 236 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+ADGGTLFLDEIGD+ LQ KLLRVLQ+RE ER+GG++T+ V+VR++AATNRD Sbjct: 237 KEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRD 296 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L V++ +FR DL+YRLNV + LPPLR R DIP L HF K ++ + I + Sbjct: 297 LAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPG 356 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 L ++S DWPGNVRELENV+ERAV+L +G+ L L PTL + Sbjct: 357 TLNAVLSHDWPGNVRELENVVERAVVLCKGSELTAD------DLPPTLRGPRPRERAPGA 410 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 L+ T E ER+ I++ L G + AA LG+ + R++ Sbjct: 411 LIPGAT--LYEIEREAILRTLEMVGGSTS---RAAEILGISVRKIQYRLKEY 457 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 163/345 (47%), Positives = 214/345 (62%), Gaps = 6/345 (1%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 +S+++E L + L ++ G I+ S AM D+ + +A S ++VLI GE+GTGKE+I Sbjct: 123 QSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELI 182 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH S R P +K+NCAA+P SLLESELFGH+KGAFTGA +G FE A+ GTL Sbjct: 183 ARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG++PL LQ KLLR+LQERE ER+GG +TI V++R+IAATNRDL MV++ FR DL Sbjct: 243 LDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 FYRLNV L LPPLRDR EDI LLA HF QK + R I I A+ L +W WPGN+ Sbjct: 303 FYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI 362 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 REL NVIERAV++ G + Q R ++ + E E+ Sbjct: 363 RELSNVIERAVVMNSGPIIFSEDLPPQIRQPVC---NAGEVKTAPVGERNLKEEIKRVEK 419 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + I++VL + G A LG+ R L+ ++Q GI +V Sbjct: 420 RIIMEVLEQQEG---NRTRTALMLGISRRALMYKLQEYGIDPADV 461 >UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022Z3_SOLUE Length = 705 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 193/429 (44%), Positives = 271/429 (63%), Gaps = 34/429 (7%) Query: 255 LLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLF---SEENCQLLQHIADRIAIAV 311 L+ + L P LAH F + +L++ R+ + V Sbjct: 295 LVGYTREDLLTGCLRWPDLTPPEYFALDELAHEEGLRFGACAPYEKELIRKGGSRVQVLV 354 Query: 312 GNADA----------WRSMTDLQESL-QQENHQLSEQLL-SNLGIGDIIYQSQAMEDLLQ 359 A + ++ L E + +E+++ +I+ +S AM +L Sbjct: 355 ATAVLKLAPFRWISFVQELSAFDRRLPVAETGEFTEEIVVLKNEFVEIVGRSAAMNRVLG 414 Query: 360 QVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGH 419 Q+++VA +++TVLI GETGTGKE++ARA+HQ+SPRRD+P V +NCAAIP LLESELFG+ Sbjct: 415 QIELVAPTNATVLILGETGTGKELVARAVHQMSPRRDRPFVTLNCAAIPTGLLESELFGY 474 Query: 420 DKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPV 479 ++GAFTGA++ GRFE+A+ GTLFLDE+GD+PL+LQPKLLR LQE+ ERLGG++TIP+ Sbjct: 475 ERGAFTGALSQKIGRFEMANRGTLFLDEVGDIPLDLQPKLLRALQEKSFERLGGTKTIPI 534 Query: 480 NVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARH 539 +VR++AATNR+L QM+ D+ FRSDL+YRL VFP+ PLRD PEDIP+LA+HF QK AR Sbjct: 535 DVRLVAATNRNLTQMMGDKLFRSDLYYRLKVFPITTSPLRDHPEDIPILARHFMQKYARE 594 Query: 540 MNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN 599 M + ID IP +AL+ L+ W WPGNVRELEN IERAV+LT+G+SL L Sbjct: 595 MGKQIDTIPPDALQALVKWPWPGNVRELENFIERAVILTQGSSLRAPL------------ 642 Query: 600 EDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 + +R A+L P + ER ++++L ET +++ AA RLGM RTTL + M Sbjct: 643 --AEIRPDAAEL--PGDSTLEFVERAHLLKILGETGWVIS---KAAARLGMPRTTLNAMM 695 Query: 660 QRLGISVRE 668 +LGIS ++ Sbjct: 696 GKLGISRKD 704 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 173/500 (34%), Positives = 265/500 (53%), Gaps = 21/500 (4%) Query: 169 DLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVL 228 D D + + + + F A V M+ R + S + GE + Sbjct: 32 DPKDALEGILKNLCGFLK-AFVGMITLHDRLSGMLMTSVSYGLTAEEKMKAIYQTGEGI- 89 Query: 229 LTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS 288 + + TR+P + ++ ++ + L +P+ N G L + + Sbjct: 90 IGRVAATRKPAIISDISKDSVFLNRTGIVSTERP--MAFLCVPVINKNELVGTLSIHKVN 147 Query: 289 STLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQ-LLSNLGIGD 346 ++L I I + R + E L++EN L Q + + Sbjct: 148 DRGMDFSYEEKILTIIGSLIG---KHISVRRRHIEELEELRRENQLLQSQSIEKPFRPDN 204 Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 ++ S M +L V VA ++STV+I GE+G GKE+IA AIH+ S R KP V++NC+A Sbjct: 205 MVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAIHKASSRIKKPFVRVNCSA 264 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +P +L+ESELFG++KGAFTGA H GRFE+ADGGT+FLDEI D+P +Q KLLR+LQ+R Sbjct: 265 LPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEIADIPFSVQVKLLRILQQR 324 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 + ER+GG+ TI +VR++ ATNR+L +M+++ FR DL+YR++VFP+ +P LR+R DI Sbjct: 325 QFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRIHVFPIYVPALRERRADIT 384 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 +L HF QK+ + + I + AL LM + WPGNVRELENVIERA++LT + ++ + Sbjct: 385 ILTDHFIQKINKQNQTNVKRITSGALDMLMMYSWPGNVRELENVIERAMILTTDDVIHSY 444 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 L P+L SS + + ERQ I+ L G VA +A Sbjct: 445 ------NLPPSLQTGV---SSDTVKVGRLDLVLGKVERQMIMDTLIANRGNVA---KSAF 492 Query: 647 RLGMKRTTLLSRMQRLGISV 666 +LG+ + R++R I+V Sbjct: 493 QLGISERVMGLRIKRYNINV 512 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 169/562 (30%), Positives = 273/562 (48%), Gaps = 27/562 (4%) Query: 115 QDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLD----- 169 + + +A +I Q + + +R +R L+ + ++ D Sbjct: 13 DEGGIHARVAAMIVQRAQELCERYDCHLYIRSERSERCEMHSLMKLVALKVAQGDSVFVS 72 Query: 170 -LDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVL 228 D E+ F + + +K + + L G Sbjct: 73 SEGDNGRQAVIEMVRFLESDFIMNEASEIHGVDKLLHENALMQERLQMILESVQDG---- 128 Query: 229 LTQTLQTRQPTLTHRADDLFLWQRDPLLLL--LASNGCESALLIPLTFGNHTPGALLLAH 286 + ++ + T + + + + +++ + + L G G++ Sbjct: 129 ICVVDRSGEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAVLRSGIARIGSIRHKK 188 Query: 287 TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSN----L 342 +T+ + N + + + + +++ + + + L ++LL Sbjct: 189 DGTTIVANVNPIFVDGEIAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKKTAQ 248 Query: 343 GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402 + I +S + D+L A S + VLI GE+GTGKEVIA IH S RR P +++ Sbjct: 249 AFANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRV 308 Query: 403 NCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRV 462 NC AIP +LLESELFGH+KGAFTGA+ G+FE+A+ GT+FLDEIG+L LQ KLLRV Sbjct: 309 NCGAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRV 368 Query: 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522 LQ++E +R+GG TI V+VR+IAATNRDL MV + FR DL+YRLNV P+ LPPLRDRP Sbjct: 369 LQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRP 428 Query: 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS 582 +DIPLL +HF +K+++ + + I +A++ M + WPGNVRELENVIER + L + Sbjct: 429 DDIPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMDTDL 488 Query: 583 LNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPR 642 + + +LP+ + + L T +E E+Q I LR+ Sbjct: 489 IT-------AAMLPSYIKGDIAGREVQSLADDTVLPWEEYEKQIIANALRQ----GTSFN 537 Query: 643 GAATRLGMKRTTLLSRMQRLGI 664 GAA L + T+ ++ ++ G+ Sbjct: 538 GAAKLLRISHKTVAAKARKYGL 559 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 163/446 (36%), Positives = 242/446 (54%), Gaps = 13/446 (2%) Query: 147 LEKDRDHHRVL--VDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFS 204 + + + +L +++ + S LDL + +V R + + + + L N Sbjct: 5 MRQSTSNLELLTIYEVSKILGSSLDLQQTLREVLRALAYQLQMHRGRVYLV-GEDNVLRL 63 Query: 205 LWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGC 264 + + LS A + + + L+T P + + L+ Sbjct: 64 VAANGLSNEAAAQIE--FRDGEGITGRILKTGMPAVVPNLAEEPLFLNRTGGREDLDEQV 121 Query: 265 ESALLIPLTFGNHTPGALLLAH---TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 S + +P+ G L + + + L +A+ I V R++ Sbjct: 122 ASLVGVPIKAAGVVVGVLTIDRISDEGPQGHFGSDVRFLTMVANLIGQTV---RLHRTVA 178 Query: 322 DLQESLQQENHQLSEQLLS-NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 + + + +E ++ ++L I D++ S M +++ QV VA STVLI GE+GTG Sbjct: 179 EERRFMMRETFRMQKELRPVAAPINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGESGTG 238 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE+IARAIH +SPR+D P +++NCAA+P SLLESELFGH+KGAFTGA H+GRFE+A G Sbjct: 239 KELIARAIHNMSPRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFELASG 298 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDEIGD+ Q KLLRVLQE+E ER+GGS+TI +VR+I ATN +L + V +F Sbjct: 299 GTLFLDEIGDISPNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGKF 358 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R+DL++R+NV + LPPLR+R +DI LA+HF K A+ A+ + EAL L W Sbjct: 359 RADLYFRINVVTIHLPPLRERRQDIGPLARHFVAKFAKDNGMALV-MEDEALEVLNRCTW 417 Query: 561 PGNVRELENVIERAVLLTRGNSLNLH 586 PGNVRELEN IERA +R + Sbjct: 418 PGNVRELENCIERAATQSRDGIIRTE 443 Score = 42.5 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 R R++ + T + A AA LGM + +++ I ++ Sbjct: 583 RDRLLWAMERTGWVQA---KAARLLGMTTRQVSYALRKYNIEIKR 624 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 175/523 (33%), Positives = 259/523 (49%), Gaps = 19/523 (3%) Query: 151 RDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDL 210 + I+ + + + +V +H+ + + L D ++ Sbjct: 17 SQQFTAMQRISVVLSRATEASKTLQEVLSVLHNDAFMQHGMICLYDSQQEILSIEALQQT 76 Query: 211 SASHCACLP--RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 R PGE ++ T Q + L ADD R L + Sbjct: 77 EDQTLPGSTQIRYRPGEGLVGTVLAQGQSLVLPRVADDQRFLDRLSLYDYDLP-----FI 131 Query: 269 LIPLTF-GNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 +PL + G L + + L+ +A+ IA + S + Sbjct: 132 AVPLMGPHSRPIGVLAAHAMARQEERLPACTRFLETVANLIAQTIRLMILPTSAAQAPQQ 191 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 + + G+ +++ +S AM ++ + V++ D+TVL+ GE+GTGKE+IA Sbjct: 192 SPRIERPRACTPSRGFGLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIAN 251 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH SPR VK NCAA+P +LLESELFGH+KGAFTGA+ +GRFE+ADGGTLFLD Sbjct: 252 AIHHNSPRAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLD 311 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG+ Q KLLR+LQE E+ER+GG T+ VNVR+IAATNR L + V FR DL+Y Sbjct: 312 EIGESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYY 371 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV P+ LPPLR+R EDI LA +K+A R + I A+R LM + WPGNVRE Sbjct: 372 RLNVMPIALPPLRERQEDIAELAHFLVRKIAHSQGRTL-RISDGAIRLLMEYSWPGNVRE 430 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 LEN +ER+ +L+ ++ + + R P S+ + +N +ERQR Sbjct: 431 LENCLERSAVLSESGLIDRDVILFNHRDNPPKALASSGPA------EDGWLDNSLDERQR 484 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 ++ L + + A AA LGM + R+Q + I++ + Sbjct: 485 LIAALEKAGWVQA---KAARLLGMTPRQVAYRIQIMDITMPRL 524 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 168/554 (30%), Positives = 267/554 (48%), Gaps = 55/554 (9%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 L +I+ + + ++ LI V + F L + D + + + Sbjct: 27 LYEISKILCAPMETVTLIKRVISVLESFIDLDHAIIAFFDEDQEAEILVGAKSDQQGAKI 86 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTH--RADDLFLWQRDPLLLLLASNGCESALLIPLTF 274 ++ Q + + P + D F R + + N + +P+ Sbjct: 87 YFDSI---PEQIVGQIVTGKMPVIIRDISKDPYFSNSRSHIWHI---NQKSCVIGVPILD 140 Query: 275 GNHTPGALLLAHTSSTLFSE-----ENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + G LL+ + E + +LL +A + A + + E L + Sbjct: 141 RDKVSGILLIDRPTPRNEREALAPDRDARLLSMVAALLGQT---ARLHQMIRREHEFLLR 197 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 ++ + Q ++ II S + +L++++++AK++ TVL+ GE+GTGKE+ A+AIH Sbjct: 198 QSSHTAPQQAEDMPHPRIIGDSPIIRSILEKINLIAKNNVTVLLRGESGTGKELFAQAIH 257 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 Q SPR+ P +K+NCAA+P S+LESELFGH+KGAFTGA +GRFE+ADGGTLFLDEIG Sbjct: 258 QASPRKGLPFIKLNCAALPESVLESELFGHEKGAFTGAAQMRKGRFELADGGTLFLDEIG 317 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 ++ Q KLLRVLQE E ER+GG++T+ VNVRVIAATN +L + V FR+DL+YRL+ Sbjct: 318 EISPNFQAKLLRVLQEGEFERVGGTKTLKVNVRVIAATNVNLEEAVSRGNFRADLYYRLS 377 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 V P+ LPPLR+ P DIPLLAK F + N+ I AL L +PGN+RELEN Sbjct: 378 VIPIFLPPLREHPSDIPLLAKEFLRHFNLE-NKTHLTIDQNALDVLSHCYFPGNIRELEN 436 Query: 570 VIERAVLLTRGNSLNLHL-----------------------------------NVRQSRL 594 I R L R + ++ Sbjct: 437 CIRRTATLARNTEITAEDFTCYNDNCLSSIFWHREEEKTPHVCKNHGSEGEISECPSAQH 496 Query: 595 LPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTT 654 + + ++ +A TT ++++++ + + + A AA LGM Sbjct: 497 CQAASNAESDKTDLAFPKEKTTQSEFRSQKEQLIDAMEQAGWVQA---KAARILGMTPRQ 553 Query: 655 LLSRMQRLGISVRE 668 + +++ GIS+++ Sbjct: 554 IGYALRKNGISIKK 567 >UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Chromatiales RepID=D0KWC0_HALNC Length = 539 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 182/531 (34%), Positives = 275/531 (51%), Gaps = 25/531 (4%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 + ++ + + + + D+ I + R + GL + L D + + Sbjct: 15 EDVELLIIYEASRLMTHNGTADEAINGILRLMSQMIGLNRGRVTLKDDDMDTLSIRYSYG 74 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 L+ A + GE V + +QTRQ + DD ++ + + L Sbjct: 75 LTPPERAR-GHYVIGEGVT-GRVMQTRQVAVVQNIDDEPVYLTRAVERGTLPQETVAFLA 132 Query: 270 IPLTFGNHTPGALLLAH-TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +P+ + N G L + LLQ +A IA + + T L L Sbjct: 133 VPILYNNTPLGVLGAHRLRGRKRPFSRDINLLQVLATLIAQILSLSRLIEEKTAL---LA 189 Query: 329 QENHQLSEQLLSNL-GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 EN L + L G I+ +S A+ L+Q V+ + +TVL+ GE+GTGKE AR Sbjct: 190 DENRALKQALDQKTEGTHGILGESPALRHALRQALHVSPTQATVLLTGESGTGKERFARL 249 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 +H S RD P + INCAAIP +LLESELFGH+KGAFTGA+ +G E+A+ GTLFLDE Sbjct: 250 VHITSQLRDGPFMAINCAAIPEALLESELFGHEKGAFTGAVVKKQGIIELANNGTLFLDE 309 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IGDL L+LQ KLL VL++R I+R+GG++ IPVNVR+IAAT+++L + V + QFR DLFYR Sbjct: 310 IGDLALDLQSKLLHVLEKRAIKRVGGTQDIPVNVRIIAATHKNLQKAVNEGQFRIDLFYR 369 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 LNVFP+ LPPLR+R D+ LA+HF Q+ +R L +L ++WPGN+R+L Sbjct: 370 LNVFPIHLPPLRERGGDVSHLARHFLQRANHEFDRN-TVFGPGVLERLDGYNWPGNIRQL 428 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE--DSALRSSMAQLLHPTTPEN------ 619 EN+++RAVL+ + + + + + + E ++ S+A + P+ P Sbjct: 429 ENIVKRAVLIAQNREITIDDVILILQHESHIGEHLEAGSTKSVAPIEPPSLPSKSHQPTQ 488 Query: 620 ------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +E Q ++ LR+T G AA LGM R++RLG+ Sbjct: 489 RGYGWVRADETQGLLDALRQTGG---NKTRAAMTLGMTPRQFRYRLERLGL 536 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 275/564 (48%), Gaps = 62/564 (10%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 L +I+ + + + +I +V + F L + + L D N ++ ++ + Sbjct: 27 LHEISKILCAPTETVGIIRNVLAVLESFVDLNNAVVALFDAAGNV-ETIIGTEADDAAAR 85 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN 276 +P ++V Q +RQP L + G + +P+ + Sbjct: 86 RYFDSIPEQAV--GQIAVSRQPLLVPDVTGDTRYGFATSQAWTVGAGRIGVIGVPILSRD 143 Query: 277 HTPGALLLAHT---SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN-- 331 G +LL ++ + LL +A + V R + +E+L ++ Sbjct: 144 RLVGVMLLDRPAIPEESVVGSMDVCLLSMVAGLMGQMV---RLHRLVQRDRENLLHDSGL 200 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 Q + + G I+ S A+ +LQ+V+IVA+SD TVL+ GE+GTGKE+ A+AIHQ Sbjct: 201 AQPAAPVADGGGYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTGKELFAQAIHQA 260 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 SPR KP VK+NCAA+P S+LESELFGH+KGAFTGAI +GRFE+ADGGTLF+DEIG++ Sbjct: 261 SPRHRKPFVKLNCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADGGTLFMDEIGEI 320 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 Q KLLRVLQE E ER+GG+RT+ V+VRV+ ATNR+L + V +FR+DL+YRL+V Sbjct: 321 SPSFQAKLLRVLQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRFRADLYYRLSVI 380 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ LPPLRDRP DIP+LA F ++ NR I ++ + L + +PGNVRELEN I Sbjct: 381 PIFLPPLRDRPTDIPMLANEFLRRFN-ETNRTSLTIASDGMDVLTTCYFPGNVRELENCI 439 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLL-------PTLNEDSALRSSMAQLLHPTTPENDEE-- 622 R L G ++ +S P R A + T E Sbjct: 440 RRTATLAPGQTIGAADFACRSDGCLSSIFWRPAAPAPGPGRHPAASDVAGDTGAATELPV 499 Query: 623 --------------------------------------ERQRIVQVLRETNGIVAGPRGA 644 +R +++ + + A A Sbjct: 500 LPAPRSSSQSSPQSSAAPDPATCPSSAVCSAAQGEWSPQRDELLEAMETAGWVQA---KA 556 Query: 645 ATRLGMKRTTLLSRMQRLGISVRE 668 A LG+ + +++ GIS+++ Sbjct: 557 ARILGLTPRQIGYALRKNGISIKK 580 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 156/383 (40%), Positives = 231/383 (60%), Gaps = 21/383 (5%) Query: 283 LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNL 342 L+ N LL+ + ++ V + L E+L Sbjct: 112 LVDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVA-----------LKEELKGRY 160 Query: 343 GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402 G II +S+ M++L + ++A+S STVLI GE+GTGKE++A A+H+ SPRR+ P VK+ Sbjct: 161 SFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFVKL 220 Query: 403 NCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRV 462 NCAA+ +LESELFGH KGAFTGA+ + GRFE+A GGTLFLDEIG++ +Q KLLRV Sbjct: 221 NCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRV 280 Query: 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522 LQE E ER+GG++T+ V+VRVIAATNRDL Q +E+ FR DL+YRL V P+ LPPLR+R Sbjct: 281 LQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQ 340 Query: 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS 582 D+PLL + F ++ + + I + +EA++ L+++ +PGN+REL+N+IE A LL + Sbjct: 341 GDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCNDSR 400 Query: 583 LNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPR 642 ++L R LP + +SS +L E++ I + E+ G V+ Sbjct: 401 IDL-------RHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVS--- 450 Query: 643 GAATRLGMKRTTLLSRMQRLGIS 665 A +L M R+TL R++ + ++ Sbjct: 451 EVARKLSMGRSTLWRRLKEMKLA 473 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 174/459 (37%), Positives = 246/459 (53%), Gaps = 13/459 (2%) Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 D A C + R + GE L+ ++ A D+ + L LL + G E + Sbjct: 8 DDEAFICENVQRILSGEGFLVCAAGSGKE------ARDIVAGEEIDLALLDLNLGSEDGI 61 Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL---QE 325 + + P L++ T E + LQ A ADA R + L + Sbjct: 62 EVLKSLKETDPELLVIIITGYGSV-ESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQ 120 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 +L++E +L G II +S+A +++ QV +A+ STVLI GE+GTGKEV+A Sbjct: 121 TLKREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVA 180 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 RAIH LS R+++ + INCA+IPA LLESELFGH+KGAFTGA +G FE A GT+FL Sbjct: 181 RAIHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFL 240 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIG++ + +Q KLLRVLQER I R+G + I ++ RVIAATNR+L + +E++ FR DLF Sbjct: 241 DEIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLF 300 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNVFP+ +PPLR+RP DI LA +F +R R + EA + + + WPGNVR Sbjct: 301 YRLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVR 360 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 EL NVIER ++ G +L ++ R A E+ Sbjct: 361 ELRNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADLGLEEAVSAIEKS 420 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 I Q L++T V A L + R TL +M++ G+ Sbjct: 421 LIQQALQKTGWNV---LQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 156/402 (38%), Positives = 232/402 (57%), Gaps = 23/402 (5%) Query: 269 LIPLTFGNHTP-GALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 IP+ G G L ++ + + R+ + ++ + + L + L Sbjct: 124 CIPILDGGGVLQGVLSIS---------------KDVTKRVYKEIQYQESQKMLKALFQEL 168 Query: 328 QQEN---HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 + +N L L +I +S M+++ ++ V+++DSTVLI GETGTGKE++ Sbjct: 169 EVKNTTIRSLQTSLRERYSFHSLIGKSYLMQNIYDLIEKVSQTDSTVLITGETGTGKELV 228 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH S R+D LV +NCAA+P +LLESELFGH KG+FTGAI +G+FE+AD GT+F Sbjct: 229 ARAIHYNSHRKDYNLVAVNCAALPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIF 288 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG+L + Q KLLRVLQER IER+G +TI V++R+IAATN+D+ +++E FR DL Sbjct: 289 LDEIGELSIPTQVKLLRVLQERYIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDL 348 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 FYRLN+ + LP L++R +DIPLL HF +K + I+ I ALR+L+++ WPGN+ Sbjct: 349 FYRLNIISIRLPSLKERTDDIPLLVNHFIEKFNIRFKKNINGISPNALRKLLAYSWPGNI 408 Query: 565 RELENVIERAVLLTRGNSL-NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 RELE VIE+AVLL ++ N+ L S D E Sbjct: 409 RELEGVIEKAVLLEESETIENIELPTDHSATTNLCLPKPLNAGPDISSYEDLQKRLDMLE 468 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 R+ V V ++ +G + A G+ R T+L++M++ + Sbjct: 469 REYFVSVFQKHHGRIGSI---AACTGLNRRTILNKMKKFSLK 507 >UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H973_ANADF Length = 602 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 170/352 (48%), Positives = 222/352 (63%), Gaps = 11/352 (3%) Query: 317 WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGE 376 +E ++ EN L ++ + +I+ S+ + +L QV VA +DSTVLI GE Sbjct: 257 IEDRKRAEEKVRNENLALRGEIDGSSMFEEIVGSSEGLRRVLAQVAKVAPTDSTVLILGE 316 Query: 377 TGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFE 436 TGTGKE+IARAIH+ S R + +++NCAAIP+SL+ SELFGH+KGAFTGA+ GRFE Sbjct: 317 TGTGKELIARAIHRQSSRSTQAFIRVNCAAIPSSLITSELFGHEKGAFTGAVQRRTGRFE 376 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 A+GGT+FLDE+GDL E Q LLRVLQERE ER+G SR I V+VRV+AAT+RDL VE Sbjct: 377 SANGGTIFLDEVGDLTAETQIALLRVLQEREFERIGSSRPISVDVRVLAATHRDLEAAVE 436 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 FR DLFYRLNVFPL++PPLR+R +DIPLLA++ + AR ++I I L Sbjct: 437 AGTFRQDLFYRLNVFPLQIPPLRERRDDIPLLAEYLIARYARTAGKSIRNIGKRTLESFR 496 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT 616 ++DWPGNVREL+NV+ERAV+L G + + +L S+A Sbjct: 497 AYDWPGNVRELQNVVERAVILCDGETFAVDETWLTRETSAPAGRSVSLAGSLA------- 549 Query: 617 PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + ERQ I L + G V+GP GAA RLG+ R TL SR+Q L I Sbjct: 550 ----DSERQMIEAALAASRGRVSGPSGAAIRLGIARQTLESRIQALHIDKYR 597 >UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Burkholderia sp. H160 RepID=B5WAL2_9BURK Length = 595 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 171/359 (47%), Positives = 232/359 (64%), Gaps = 18/359 (5%) Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 + + + + R L+ N L ++LL D++ ++ ++Q V VA +D Sbjct: 254 LFIRDIEERRKAEVEVGQLRGLNRYLQDELLEAEAGADLVGT-AGLQGVMQHVRQVAGTD 312 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 ++VL+ GETGTGKE+IA+A+H++S R KPLVK+NCA +PA+L+ESELFGH+KGAFTGA+ Sbjct: 313 ASVLVTGETGTGKELIAQALHRMSARSGKPLVKLNCAVLPANLVESELFGHEKGAFTGAL 372 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 GRFE+AD GTLFLDE+G+LPL+LQ KLLRVLQ E ERLG RT +VR+IAATN Sbjct: 373 ARKAGRFELADEGTLFLDEVGELPLDLQAKLLRVLQNGEFERLGSIRTQKTDVRIIAATN 432 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 R+L + +FR+DL+YRLNVFP+ELPPLR RPEDI L +HF + A R IDA+ Sbjct: 433 RNLAEEAATGRFRADLYYRLNVFPIELPPLRARPEDIEQLVEHFVRHYAAKYGRHIDAVA 492 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 L L ++ WPGNVREL++VIERAV+LT+G+ L L R Sbjct: 493 DAQLNVLRAYRWPGNVRELQHVIERAVILTQGSQLALGDWFRD----------------- 535 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 A ++ ER I++VL +T+ V+G GAA RLG+ TTL SRM+RL I+ + Sbjct: 536 ATPPACEALTLEDAERAHILKVLEQTDWRVSGKAGAAERLGLPPTTLESRMKRLAITRK 594 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 140/353 (39%), Positives = 220/353 (62%), Gaps = 15/353 (4%) Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + D + ++E++++ + + +II +S+ ++++ + +VA+S++ Sbjct: 101 IKPVDTELLLNVIKEAIEKSKG-IQKLEKIETPFPEIIGKSKTIQEIFYIMQMVAESNAN 159 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE++ARAIH+ S R+ KP + ++C IP +LLESELFGH+KGAFTGA Sbjct: 160 VLITGESGTGKELVARAIHKNSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATER 219 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G E+A+ GT+FLDEIG+LP+ LQ KLLR LQE+EI+R+G ++ I V+VRVI+ATN+D Sbjct: 220 KTGLIELANEGTVFLDEIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKD 279 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + +++ FR DL++RLNV + LPPLR+R EDIPLL HF K ++ N+ I + E Sbjct: 280 LEKAIKEGSFREDLYWRLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPE 339 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 + L+++ WPGN+REL NVIERAV+L+ +++ R+ + ++ Sbjct: 340 VMNALINYYWPGNIRELANVIERAVVLSPSGLISIKHLPRRIQ-----------ENTGWT 388 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 ++ T E E+ I++ L T AA LG+ R L ++M+ G Sbjct: 389 IIKENTFNLLEVEKALILKALNSTGW---NQTKAAEILGISRKQLRTKMKHHG 438 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 172/526 (32%), Positives = 266/526 (50%), Gaps = 38/526 (7%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 L I + + + + R + +V+ D D + + Sbjct: 66 TLQRIVSDMGPQRPFQSSLKSLLRTLAENHHFKRPHLVIFDPETQTLKLSLTHDPTKAQD 125 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 PG V Q + QP + R D + + +P+ Sbjct: 126 V---EYSPGVGVT-GQVFSSGQPVIVPRMKDHPSFLNKAFGRSEEELATLGFICVPVLGP 181 Query: 276 NH------TPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 G L + + L S E C+ LQ +A IA N A+ LQE + Sbjct: 182 GEEASPREVIGTLSVDTPITDLPSLEGQCRFLQVVAGMIA----NQAAY-----LQEEMA 232 Query: 329 QENHQLSEQL------LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 ++ H +++ L + + +I+ S++M +L QV V S +T L+ GE+GTGKE Sbjct: 233 RQKHMMTQGLIGGDVAENTVQAANIVAASKSMRLVLNQVAQVGPSRATALLRGESGTGKE 292 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 ++A AIHQ SPRRD PL+K+NCAA+P+ L+ESELFG+ KGAFTGA+ +G FE+A GT Sbjct: 293 LLAEAIHQASPRRDMPLIKLNCAALPSDLVESELFGYQKGAFTGAVQNKKGLFELAHKGT 352 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDEIG+L Q K+LR +QE+EI+RLG +TI V+VR+I AT++ L ++VE FR Sbjct: 353 LFLDEIGELSASAQAKVLRAIQEQEIQRLGSEQTISVDVRLICATHQHLEELVESGSFRE 412 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YR+NVFP+ +PPLR+R EDI +A+HF ++ A ++I I T A+ L + WPG Sbjct: 413 DLYYRINVFPVFIPPLRERREDILPVAEHFLKEYAEEYQKSIKRISTPAIDLLTQYHWPG 472 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 N+REL+N IERAVL+ + R + P+L S+ + Sbjct: 473 NIRELKNCIERAVLVCDEQVI------RTYHMPPSLQ---TAESTATDSSLSFCEAVAKF 523 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 E++ +V L++ G + AA L + + ++++ GI ++ Sbjct: 524 EQELLVDALKKARGNM---LQAARDLRVSYRIVNYKVKKYGIDAKK 566 >UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QC42_DESAH Length = 922 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 197/546 (36%), Positives = 280/546 (51%), Gaps = 36/546 (6%) Query: 120 FNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAR 179 I P L E L E + R I VLS+ DL++L+ + Sbjct: 411 LAGYGDIFFPDDLQHLLGVENGRDPDLKEPETMLQRFTEMIDELVLSN-DLNELLTHTVK 469 Query: 180 EIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPT 239 + F G + + +K + + ES + +T ++ Sbjct: 470 ATNRFLGAERGGVFWFEDKKTPRLIAAHNLF--------------ESDINNKTFRSSLEL 515 Query: 240 LTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQ 298 + D + ++ ++ L +P G L + FS N Sbjct: 516 IFKAFHDNTPLIKHCKVVETLVGRTKAMLAVPFEVKGTAKGILYHDNAYIDDCFSYFNKN 575 Query: 299 LLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLL 358 L +A ++ V + + +L ++++ + +L G +IIYQS M+ L Sbjct: 576 ELAGMASYLSKYVNH------LLNLTRRIEEKTSKNYTRLGEISG-ENIIYQSLIMKKKL 628 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 +QVD +A +DSTVLI GETG GKE+IAR IH+ S R+D PLV ++ +IP +L+ESELFG Sbjct: 629 KQVDKIAGTDSTVLILGETGVGKELIARRIHERSLRKDYPLVVVDPTSIPETLIESELFG 688 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H+KGAFTGA GR E+A GTLF+DE+G++PL +Q KLLR LQE+ I RLGGS TI Sbjct: 689 HEKGAFTGADKQRTGRVELAHKGTLFIDEVGEIPLSIQVKLLRALQEKTIVRLGGSTTIH 748 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 + R+IAATNRDL + V FR DLFYRLNV P+E+PPLR R EDI L+A++F +K Sbjct: 749 SDFRLIAATNRDLQKEVAKGNFREDLFYRLNVIPIEIPPLRKRGEDILLIAEYFLKKFRM 808 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTL 598 N E L+ ++WPGN+REL N+IERAVLL+ + L + L + + P Sbjct: 809 KYNFPTIEFTPENKVMLIEYNWPGNIRELNNIIERAVLLSEEDQLEIELKTKNNSSHP-- 866 Query: 599 NEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 P DE +R+ I VL E NG + GP GAA RLGMKRT+L +R Sbjct: 867 -----------DDFFRDRPSLDEMQRRYIGTVLEECNGQIGGPGGAAERLGMKRTSLYAR 915 Query: 659 MQRLGI 664 M+ LG+ Sbjct: 916 MRTLGM 921 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 151/332 (45%), Positives = 212/332 (63%), Gaps = 3/332 (0%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 ++LQ ++ + + + + +II +S+ M L + ++ VA SDSTVLI GE+GTGKE+ Sbjct: 121 HQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKEL 180 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARAIH LS R DK V +NCAAIP LLESELFGH KG+FTGA+ + GRFE+AD GTL Sbjct: 181 VARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTL 240 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIGD+ LQ KLLRVLQ RE+E +G +R+ V+VR+IAATN++L MV ++FR D Sbjct: 241 FLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFRED 300 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRL+V P+ LPPLR+R D+PLL F +K R R + + + L ++DWPGN Sbjct: 301 LYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGN 360 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VRELEN++ER V++ +++H + R T ++ +E E Sbjct: 361 VRELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFE 420 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 + I+Q L ++ G + AA L +KRTTL Sbjct: 421 NRLILQALEKSGG---NKKEAAELLNLKRTTL 449 >UniRef50_B2S230 Formate hydrogenlyase transcriptional activator FhlA n=3 Tax=Treponema RepID=B2S230_TREPS Length = 600 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 192/490 (39%), Positives = 267/490 (54%), Gaps = 40/490 (8%) Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD-------------DLFLWQRDPLLLLL 259 + + R L T LQ LT R D D L D L+ Sbjct: 113 FESSQILRVRKARGPLYTPRLQHHTIDLTKRQDLARILSQKSPYLFDPTLAHTDTYTELI 172 Query: 260 ASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRS 319 S L+ PL + G L L H F+ + + + ++ I++AV DA + Sbjct: 173 PMPQNHSCLIAPLYIDDTPIGMLTLDHRLCEQFTPDVVRFITTLSKLISLAVAQTDASET 232 Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 ++ +L E + L + ++I S A L + +VA SD VL+CGETGT Sbjct: 233 LSQKSHALLTERNAL--LAPQSPAFKNMIGTSPAWTRTLDAIKLVAASDLPVLVCGETGT 290 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE++AR +HQLS R DKP V +NC+A+ SL ESELFGH+KGAF+GA+ THRGRFE+A Sbjct: 291 GKELVARTVHQLSTRSDKPFVPVNCSALVHSLAESELFGHEKGAFSGAVGTHRGRFELAH 350 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDE+GDLPLELQPKLLRVLQ+ ER+GG R++ V+VR+IAATN +L + V + Sbjct: 351 GGTLFLDEVGDLPLELQPKLLRVLQDGVFERVGGERSVSVSVRIIAATNINLSEAVTQGK 410 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR DL YRL+VFPL LPPLR+R ED+ LLA+HF QK+ + A +++ S Sbjct: 411 FREDLLYRLDVFPLSLPPLRERAEDVALLAEHFIQKIKTRPGFERTQLSPSAFKKIFSLT 470 Query: 560 WPGNVRELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTP- 617 +PGNVREL N++ERA LL RG+++ HL R + +++ + P P Sbjct: 471 FPGNVRELRNLLERAALLARGDTIGAEHLVCRTPESGTQTTVYPREHTEVSESVQPAIPL 530 Query: 618 ------------ENDEEERQRIVQ-----------VLRETNGIVAGPRGAATRLGMKRTT 654 + +EE +V L +NG + G GAA LG+K +T Sbjct: 531 CIRDSSCMVRCTQGKKEETTLVVNFHQAQRAAIQAALDASNGKIYGANGAAEILGLKPST 590 Query: 655 LLSRMQRLGI 664 L S+M++LG+ Sbjct: 591 LQSKMKKLGL 600 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 151/382 (39%), Positives = 229/382 (59%), Gaps = 14/382 (3%) Query: 288 SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDI 347 S+ +F + I V + + L+QE ++S Q + + Sbjct: 212 SAPVFDSGKVIGGLAVEKDITEIVQLNQELNKASTQVKLLEQEIRKISGQ---DCAFNKL 268 Query: 348 IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI 407 I +S+A++ L+ ++ +++TVL+ GE+GTGKE++ARAIHQ SPR P + +NC AI Sbjct: 269 IGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVVNCGAI 328 Query: 408 PASLLESELFGHDKGAFTGAI-NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 P +L ESELFG++ GAFTGA G FE+A+GGTLFLDE+G++P+E+Q KLLRVLQE Sbjct: 329 PNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVLQEG 388 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 R+GGS+++ VNVRV+AAT+R+L M+ RQFR DL+YRLNV LE+PPLRDR EDIP Sbjct: 389 TFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRREDIP 448 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 L F Q+ + ++ I I + + + WPGNVREL+N +ER V+LT G+ ++ Sbjct: 449 ELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDGDIID-- 506 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND-EEERQRIVQVLRETNGIVAGPRGAA 645 ++ L L ++ + + + E E+Q I++ L++ G AA Sbjct: 507 ----EAALPENLRRNTYISLVTSPVSQGKLMNVAVEAEKQLILKTLQQVRG---NRSEAA 559 Query: 646 TRLGMKRTTLLSRMQRLGISVR 667 LG+ R+TL ++++LGI + Sbjct: 560 RVLGIPRSTLYYKLRQLGIPAK 581 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 155/341 (45%), Positives = 225/341 (65%), Gaps = 16/341 (4%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Q+SL +EN L + L D++ +S AM+ + + A+S+ST+L+ GE+G+GKEV Sbjct: 123 QQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEV 182 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARA+H SPR P V ++CAA+ SLLESELFGH+KG+FTGAI+ +G+FE A GGTL Sbjct: 183 LARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGTL 242 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDE+GD+ +LQ LLRVL+ER R+GG+ I V+VR+IAATNRDL + + +FR D Sbjct: 243 FLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFRED 302 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNV P+ +PPLR+R EDIPLL ++F ++++ M R I+ + +A+ LM+ DWPGN Sbjct: 303 LFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWPGN 362 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VREL NV+ER ++ G + L LPT E ++ ++A L +E E Sbjct: 363 VRELRNVLERGAVVATGTVIQL-----SDLGLPTRLEAASKPGTLASL--------EEVE 409 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ++ + VL NG V+ +A LG+ R TL ++M++ G+ Sbjct: 410 KRHVAAVLAHANGNVS---QSARILGIDRVTLYNKMRKYGL 447 >UniRef50_C7LQX0 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQX0_DESBD Length = 647 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 174/430 (40%), Positives = 251/430 (58%), Gaps = 25/430 (5%) Query: 244 ADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQ-- 301 DD ++Q+ ++ + S + ++ + N L F +LL Sbjct: 239 PDDKAMFQK--VMGEVISKKGQGSIEYRIVLPNGQIRWLRRWVRYHEGFPAGRPRLLGIT 296 Query: 302 -HIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 + +R + + + + L L++EN L +++S ++ + M+++L + Sbjct: 297 LDVTERQQMELKLRAQLQEIERLHGQLEEENSYLRNEVMSCRERKNLHNFGERMQEVLIK 356 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 V+ VA ++ TVLI GETGTGKEV+A+AIHQ SPR + ++ +NCAA+PA+L+ESELFG + Sbjct: 357 VEQVASTECTVLIEGETGTGKEVLAQAIHQSSPRSHRMMITVNCAALPAALVESELFGRE 416 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGA++ GRFE+A G TLFLDEIG++PLE Q KLLRVLQE E ERLG +TI V+ Sbjct: 417 KGAFTGALSRQVGRFELAQGSTLFLDEIGEMPLETQAKLLRVLQEGEFERLGSPKTIKVD 476 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VRV+AA+NRDL V +FR DL+YRLNVFP+ LPPLR+R EDIP L F + M Sbjct: 477 VRVLAASNRDLAVEVSQGRFRRDLYYRLNVFPILLPPLRERREDIPQLVWEFISEFGDRM 536 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLN 599 + I I + +L WPGN+REL NVIE A+++T+G++L L HL V + P + Sbjct: 537 GKKIRRIAKNDMERLKVHAWPGNIRELRNVIEHAMIVTKGDTLELAHLLVNAPQDEPVVT 596 Query: 600 EDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 +E ER+ I ++L+ V G GAA L + +TL SRM Sbjct: 597 -------------------LEEMERRHIQRILKVAGNRVRGSGGAAELLAINPSTLNSRM 637 Query: 660 QRLGISVREV 669 ++LGI R V Sbjct: 638 RKLGIKARPV 647 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 154/431 (35%), Positives = 231/431 (53%), Gaps = 25/431 (5%) Query: 235 TRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFS 293 ++ P D + + D + LL SA+ +I +T A+ ++ + Sbjct: 42 SKDPEYAIVLTDFVMPEMDGIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYI 101 Query: 294 EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 + + D + + + + L+ E +L +L G+II +S Sbjct: 102 TKPFKR-----DELVLVIEKILQM-------QRLEGEVDRLRSELGEKYTFGNIIGESPK 149 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 ++ + + V+ +++ +LI GETGTGKE++A+AIH S R + VK++C+++ +LLE Sbjct: 150 IKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVDCSSLTETLLE 209 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 SELFGH+KGAFTGA GRF AD GT+FLDEIG++ L +Q KLLRVLQ+ E E +G Sbjct: 210 SELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQDSEFEAVGS 269 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 +I V+VR+IAATN DL VE FRSDLFYRLNV + LPPLR+R EDIPLLA HF Sbjct: 270 DESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDIPLLAAHFL 329 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 + + ++ + L L S+ WPGN+RELENVIERAV+L + N + Sbjct: 330 AIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKNRIT-------PE 382 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 +P E R ++ P ++ ERQ I+ L + A A L + R Sbjct: 383 DVPLYQEKMGTRPGLSG--KPLQELLEQTERQIIINTLEAND---ADKEKTAKILKISRA 437 Query: 654 TLLSRMQRLGI 664 +L +++ + I Sbjct: 438 SLYNKLNKYKI 448 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 142/348 (40%), Positives = 205/348 (58%), Gaps = 5/348 (1%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + L QEN +L ++ S +II S M+ + + A ++STVLI GE+GTGKE+ Sbjct: 120 RRQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEM 179 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 IARAIH S R+D+P V ++C + +LLESELFGH KG+FTGA+ RG F++A+ GTL Sbjct: 180 IARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTL 239 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDE G++PL Q KLLRV+QERE +G + NVR+I ATN+DL MV + FR D Sbjct: 240 FLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFRED 299 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YR+NVFP+ P LR+R +DIP LA HF + + + + I A+ LM++ WPGN Sbjct: 300 LYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGN 359 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN--DE 621 VRELEN ++RAV+L+ + P L+ D S + + E +E Sbjct: 360 VRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEE 419 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 E+ + + L+ + +A GM+RT + M++ I VR+ Sbjct: 420 VEKLFVQETLKR---NASNVTRSAEETGMQRTNFQALMKKYNIRVRDT 464 >UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 Tax=Proteobacteria RepID=A0L6X2_MAGSM Length = 550 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 176/531 (33%), Positives = 272/531 (51%), Gaps = 28/531 (5%) Query: 154 HRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSAS 213 L + + +L ++ V + G++ + L D D + Sbjct: 29 LEALYQVGRILAEEGNLTAVLDGVLEAVEKMGGMSKSIITLSDPETGRLLVRAVHDSNEG 88 Query: 214 HCACLPR---CMPGESVLLTQTLQTRQPTL--THRADDLFLWQRDPLLLLLASNGCESAL 268 PGE V+ +Q + + FL + L L + Sbjct: 89 FAPLGGDDIVYRPGEGVM-GSIMQNGNTFICELPANEQRFLHRLGLLDPTLP------FI 141 Query: 269 LIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL--QE 325 +PL G L + F E L+ +A+ ++ V + + + L + Sbjct: 142 GVPLFLDAKPIGVLAAQPVFGNRAFLREQAHFLEMVANLVSQKVRSNQRYEQLQALLSSQ 201 Query: 326 SLQQENHQLSEQLLSNLGIGDI----IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 ++ + +S + + + ++ +M+ ++ A+ DSTVL+ GE+GTGK Sbjct: 202 AVGRSTTAMSTAIRIENERSGMQPVLLGKAASMKQVVNMALKAAQFDSTVLVLGESGTGK 261 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E++A +H S R +P VK+NCA++ +LLESELFGH+KGAFTGAI T +GRFE+ADGG Sbjct: 262 ELVANTVHYNSARASRPFVKVNCASLSDNLLESELFGHEKGAFTGAIATRKGRFEMADGG 321 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDEIG++ Q KLLRVLQE E ER+GG+RTI VNVRV+AATNRDL V+ FR Sbjct: 322 TLFLDEIGEISPSFQAKLLRVLQEGEFERVGGARTIKVNVRVVAATNRDLSAEVQKGNFR 381 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 +DLFYRL+V P+E+P LR+R ED+PLL + ++++ +R + +I EALR+LM ++W Sbjct: 382 ADLFYRLHVLPIEIPALRERMEDLPLLTEALLERISTKQHRPL-SITKEALRRLMMYEWA 440 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQS----RLLPTLNEDSALRSSMAQLLHPTTP 617 GNVRELEN +ERA +L+ ++ + S +P L +S L Sbjct: 441 GNVRELENCLERAAVLSDEGHIDASHIIFSSGANREPMPALTNHRIHNASSCALPSSADL 500 Query: 618 ENDE-EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + EER+R++ L ++ + A AA LGM + R++ L I +R Sbjct: 501 SDPTLEERERVMGALEQSGWVQA---KAARLLGMTPRQVAYRIKILNIPMR 548 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 163/477 (34%), Positives = 242/477 (50%), Gaps = 22/477 (4%) Query: 196 DHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPL 255 ++R+ + + D S L + + L+ +Q + + L D Sbjct: 21 ENRQENQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIK 80 Query: 256 LLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIA-----DRIAIA 310 + L G + F + + T+ +I + I + Sbjct: 81 MPRLDGFGLLD--HVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLV 138 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V NA L++EN QL ++L +II +S+ M+ + ++ V+ S Sbjct: 139 VENALERMD-------LRRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVN 191 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE++ARAIH S R D+P V I C AIP +LLESELFGH+KGAFTGA+ Sbjct: 192 VLITGESGTGKELVARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQ 251 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G FE+ADGGTLFLDEI +LP +Q KLLRV+QE E ++GG+R + V+VR++AATN+D Sbjct: 252 KQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKD 311 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L Q V + QFR DL+YRLNV + LPPLRDR EDIPLL HF QK+ + IP Sbjct: 312 LAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS---TTIPDG 368 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 +R+ + + WPGN+RELEN +ER V+L + +L + + + Sbjct: 369 VMRRFLDYHWPGNIRELENTVERCVVLGGKGEITEDSL--PPHMLCISGTGDQQLTELPE 426 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 E+ +++ L T G+ + AA L + ++ R+ + GI Sbjct: 427 EGLDLDDYLGAIEKDILLKALDRTGGV---RKRAAELLHITFRSIRYRLAKFGIEAE 480 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 166/429 (38%), Positives = 240/429 (55%), Gaps = 32/429 (7%) Query: 237 QPTLTHRADDLFLWQRDPLLLLL-ASNGCESALLIPLTFGNHTPGALLLAHTSSTLF--S 293 +P + DL + + D L LL ++ LT A+ + F Sbjct: 47 RPDVV--LSDLAMPETDGLWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVK 104 Query: 294 EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 + L+ DR A+ + R + L+ L+Q LG D+I QS Sbjct: 105 PLDTARLKVCIDR---ALEKKETMREVQTLRRRLKQ------------LGSSDLIAQSVG 149 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 M +++ V+ VA S ++V I GE+GTGKEV++RA+H LS RRDKP + INCA+IPA+L+E Sbjct: 150 MRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINCASIPATLIE 209 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 SELFGH++GAFTGA G FE+A GGTLFLDE+G++P+ELQ KLLRVL+E ++ RLGG Sbjct: 210 SELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGG 269 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 I V+VRV+ ATNRDL Q +++ +FR DL++RLNVF + LPPLR+R +D+P+L +HF Sbjct: 270 KVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDVPILVQHFV 329 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 K + + + EA+ L ++DWPGN+REL N +ERAV+L G + + Sbjct: 330 DKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAVILCDGELIT------REH 383 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 L P + S R + P D ER+ I+ L+ A LG+ Sbjct: 384 LPPDMAGKSPERHTFR---LPFGLSLDAVEREYILGSLQRNGN---NKARTAEVLGVSEK 437 Query: 654 TLLSRMQRL 662 TL +++ R Sbjct: 438 TLYNKLNRY 446 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 155/401 (38%), Positives = 236/401 (58%), Gaps = 17/401 (4%) Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 ++ +T ++ A++ + + E+ Q Q +A+ + ++ DL SL Sbjct: 83 VVLMTAHSNLHDAVVAIKEGAYDYVEKPVQP-QQLAEIVRKSL-------EARDLISSLA 134 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 N + + S +I+ S M+++ + + K D+TVL+ GE GTGKE++ARAI Sbjct: 135 MSNPVFDDDIES-----EIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVARAI 189 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H SPR+ V INC AIP +L+ESELFGH+KGAFTGA+ G+F++A+ GTLFLDEI Sbjct: 190 HFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNGTLFLDEI 249 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+L ++Q KLLRVLQER+ +G +R + R+IAATNR+L +M+E+ +FR DLFYRL Sbjct: 250 GELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDLFYRL 309 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NV P+ LPPLR+R +DI LA +F +K ++ R I AI EAL L S+ WPGN+RELE Sbjct: 310 NVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWPGNIRELE 369 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N+IER+ ++ + + + +L P D + L +E E++ IV Sbjct: 370 NIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPL-DFDAFKEEMEKEFIV 428 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 L+ NG + A + + TLL ++++ GI+V+E Sbjct: 429 SALKANNGRINQTVAQA---NIPKNTLLRKIRKYGINVKEY 466 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 150/324 (46%), Positives = 211/324 (65%), Gaps = 6/324 (1%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II QS ++ +L +D ++K+D+T LI GE+GTGKE++A+ IHQ S R +KP + +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP+ LLESELFGH+KGAFTGA N GRFE+A+ GT+FLDEIGD+PL LQ K+LRV+QE+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 ER+GG+R I VNVR+IAATN+DL V++ +FR DLF+RLNV P+ +PPLR+R EDIP Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LL ++F K + ++ I E ++ +++ WPGNVRELEN+IER +L G ++N+ Sbjct: 182 LLCEYFINKFSHKFGYSLQ-IKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINIK 240 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLH--PTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 + R + + + E E++ I+ L I A Sbjct: 241 DIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWI---KSRA 297 Query: 645 ATRLGMKRTTLLSRMQRLGISVRE 668 A L + RTTL+ +M+RL I E Sbjct: 298 AKYLNINRTTLIEKMKRLNIKDNE 321 >UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSM1_HALO1 Length = 557 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 172/438 (39%), Positives = 245/438 (55%), Gaps = 9/438 (2%) Query: 232 TLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTL 291 Q R +T D + + D + + G + + PL G L + Sbjct: 124 AAQGRSIVVTDPQRDPKIRRPD----WIRAEGVQGFVGQPLICRGQRLGVLGVFVRQP-- 177 Query: 292 FSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQS 351 ++ + +L+ +A+ A A+ A A+ + +++ LQ EN L E + +++ +S Sbjct: 178 VTQSSTSVLRILAEHAAAAIATARAFEQVDEMRRQLQAENAYLREVVADRD--HEMVGES 235 Query: 352 QAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASL 411 AM + ++ VA + + VLI GE+GTGKE++ARA+H+ S R PL+++NCA++ L Sbjct: 236 TAMAHVRGEIQAVAPTHANVLILGESGTGKELVARAVHRASRRAAGPLIEVNCASVVREL 295 Query: 412 LESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERL 471 ESE FGH KGAF+GAI G FE A+GGTLFLDEI +LPLELQ KLLRVLQE R+ Sbjct: 296 AESEFFGHTKGAFSGAIRDRAGWFEAAEGGTLFLDEIAELPLELQGKLLRVLQEGRYARV 355 Query: 472 GGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKH 531 G +RT +VR++AATNRDL + V +FR DLFYRLNVFP+ +PPLRDR D+P LA H Sbjct: 356 GETRTRDADVRIVAATNRDLKEEVAAGRFREDLFYRLNVFPIRVPPLRDRAGDMPALAGH 415 Query: 532 FTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQ 591 ++ R M + E L +L + WPGNVREL NV+ERAV++ + + + Sbjct: 416 LLAQICRAMKVPPVTLDNEQLGRLQAHTWPGNVRELRNVLERAVIVAASRKGPVAVRIDA 475 Query: 592 SRLLPTLNEDSALRSSMAQLLH-PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGM 650 S A + A T E E ER+ I L G V GP GAA LG+ Sbjct: 476 STDASGAQPSVASAAGRADAGRVATLSELRERERENIAAALDACGGRVYGPSGAAALLGV 535 Query: 651 KRTTLLSRMQRLGISVRE 668 K TTL SR++R G++ + Sbjct: 536 KPTTLASRIKRYGLAKPK 553 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 143/364 (39%), Positives = 220/364 (60%), Gaps = 11/364 (3%) Query: 305 DRIAIAVGNADAWRSMTDLQ--ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 D IA N + + +L++E LSE + I+ S M+++ ++D Sbjct: 99 DYIAKPFTNEELLLVIERFLKFRTLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKID 158 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 VAK+D VLI GE+GTGKE+IA AI + S R++KP +KINCAAIP +L ESELFG++KG Sbjct: 159 AVAKTDVPVLIQGESGTGKELIANAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKG 218 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 AFTGA T +G+FE+A+GGT+F DEIGD+PL LQ KLLRV+++ + RLGG I +NVR Sbjct: 219 AFTGATETKKGKFELANGGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVR 278 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 I AT+++L ++++ +FR DLFYR+NV P+ +PPL++R EDIP+L + F + + + Sbjct: 279 CIYATSKNLKELIKAEKFREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGK 338 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 I A L+S+D+PGNVREL++ IERA+LL++ +++ + L + + Sbjct: 339 QNITISPSAYEALLSYDYPGNVRELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKC 398 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + + + E+ I++ L+E AA +LG+ R L +++ Sbjct: 399 FISN------FSLKECIENFEKNLIIKALQECGWK---KTEAAKKLGISRKALWEKIKFY 449 Query: 663 GISV 666 GI Sbjct: 450 GIEP 453 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 153/332 (46%), Positives = 214/332 (64%), Gaps = 5/332 (1%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 ++LQ+++ + + + + +II +S M L + ++ VA SDSTVLI GE+GTGKE+ Sbjct: 121 HQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARAIH LS R K V +NCAAIP LLESELFGH KG+FTGA+ T GRFE+AD GTL Sbjct: 181 VARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTL 240 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIGD+ LQ KLLRVLQ +E+E +G +RT V+VR+IAATN++L +V + FR D Sbjct: 241 FLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFRED 300 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRL+V P+ LPPLR+R DIPLL +F +K R+ R + + + L ++DWPGN Sbjct: 301 LYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGN 360 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VRELEN++ER V+L ++ + R + + + R ++ ++ E Sbjct: 361 VRELENLVERLVILKGSGTITFQDLPEKYRGIKS--APKSERLTLPDTGFCLNSAVEDFE 418 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 Q I+Q L +T G + AAT L +KRTTL Sbjct: 419 NQLILQALEKTGG---NKKEAATLLNLKRTTL 447 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 149/355 (41%), Positives = 208/355 (58%), Gaps = 23/355 (6%) Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 +G R +T L + L +L +II S M+ + Q ++ +A ++ Sbjct: 250 FLGAVLVIRDITRLVD--------LERELQERNQFHNIIGASHKMQAVYQLLENLADFET 301 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKE++A+A+H R KP V +NC+A+ +LLESELFGH KGAFTGAI Sbjct: 302 TVLITGESGTGKELVAKALHHTGSRAFKPFVSVNCSALAENLLESELFGHVKGAFTGAIR 361 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 ++GRF+ A GTL LDEIGD+ +Q KLLRVLQERE ER+G + I V+VRVIA TN+ Sbjct: 362 DYQGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQ 421 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL + V +FR DL+YRLNV ++LPPLR+R EDIPLLA HFT + + N I + Sbjct: 422 DLKEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSD 481 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 + + M++ WPGNVRELE+ IERA +L R ++L +P ++ S Sbjct: 482 KVMNAFMNYHWPGNVRELEHSIERATVLCRDKMISLE-------HIPGEIAEAYSLSGPR 534 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 P E +E I+ L+ T AA LG+ R T+ ++++ GI Sbjct: 535 LKKQPAADEPNE-----IIDALKRTGW---NKAKAARLLGVSRKTIYRKIEKYGI 581 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 231/426 (54%), Gaps = 16/426 (3%) Query: 246 DLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 D W + L + + +L G ++A + E N + + Sbjct: 84 DKGFWSESAAICALKAKKEVTIMLK--MTKGEKVGQKIMATGIPVMDDEGNIKRVVVNVR 141 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 I V D L E E L + + ++ +I+ S + +L VA Sbjct: 142 DITEIVNLRDQLEETQQLNEKYAAE---LEQMRIQHVQYDNIVASSPKTKRVLDMAAQVA 198 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 K DSTVLI GE+G GKE++A IH LS R PL+KINC AIP +LLESELFG++ GAFT Sbjct: 199 KVDSTVLITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFT 258 Query: 426 GAINT-HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 GA G FE+A+ GTLFLDE+G+L L LQ KLLRVLQ+ E+ R+GG + IPV+VR++ Sbjct: 259 GARKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIV 318 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 AATN+DL +MV +FR DL+YRLNV +E+PPLR+R EDIPLLA HF +K+ + Sbjct: 319 AATNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYGFN- 377 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL 604 + + +L ++ WPGN+RELENVIER +++T+ + + + L +L D Sbjct: 378 KRFAPDVIDRLSAYPWPGNIRELENVIERVMVMTKSDEIRTIHLPGNIKNLSSLQNDIMF 437 Query: 605 RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + P + E+ I Q L++ R A L + ++T++ ++++ + Sbjct: 438 SE-----IMPLKKAVEHVEKHLIEQALKKYG----STRKVARALKVNQSTIVRKIKKYKL 488 Query: 665 SVREVL 670 S + L Sbjct: 489 SAGQEL 494 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 168/475 (35%), Positives = 253/475 (53%), Gaps = 17/475 (3%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 L +++ + S LDL+ + DV + + + + L D ++ + + S ++ + Sbjct: 27 TLYEVSKILGSTLDLEHSLHDVLNVLASYMQMRRGVVTLKDAQR-QLEVVAVSGMTLRNA 85 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 P + + + T P + + + +S + +P+ G Sbjct: 86 VEGEARYPLA--VAQEVVSTAMPMIVPSMAADPRFAAFAAEADGLDDEVQSMICVPIKGG 143 Query: 276 NHTPGALLLAHTS--STLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH 332 G+L + T F E + + L +A IA V R + ++ L +E Sbjct: 144 VKPFGSLSIERHRDRGTRFKFEHDVRFLTMVATLIAQTVS---LERRVVGDRDRLIEEKA 200 Query: 333 QLSEQLLSNLG------IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 +L + L + +++ +S AM + QV +A S +TVL+ GE+GTGKE+IA+ Sbjct: 201 RLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRGESGTGKELIAQ 260 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH LSPR DKP +K+NCAA+P +LLESELFGH+KGAFTGA +GRFE+A GGTLFLD Sbjct: 261 AIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTGATTERKGRFEMASGGTLFLD 320 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG++ + Q KLLRVLQE E ER+GG +TI V+VR++AATN+DL V +FR+DL+Y Sbjct: 321 EIGEITVHFQAKLLRVLQEGEFERVGGGKTIKVDVRLVAATNKDLEDAVTRGEFRADLYY 380 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 R+NV P+ LP LR+R ED+PLLA+ F K R++ AL + ++PGNVRE Sbjct: 381 RINVVPIFLPALRERREDVPLLAQFFLTKFNEENGRSL-RFSEGALTAMGGCNFPGNVRE 439 Query: 567 LENVIERAVLLTRGNSL-NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 LEN + RA L + + L L+ + L L P T +ND Sbjct: 440 LENCVCRAATLAQDEVIQELGLSCHNDKCLSASLWQRRGSGRAIGGLAPVTEQND 494 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 E+D +R+RIV + + + A AA LGM + +++ I ++ + Sbjct: 547 EDGEDESDAGQRERIVHAMEKAGWVQA---KAARLLGMTPRQIGYALKKHDIPLKRM 600 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 164/526 (31%), Positives = 259/526 (49%), Gaps = 47/526 (8%) Query: 155 RVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH 214 R L + +++ +D+L+ + ++ ++L + + + A+ Sbjct: 132 RKLFAFSEKLINRRSVDELLEAMLDDVIELTHADKGFLLLLEGAEAAADTAVNGGAPAAP 191 Query: 215 CACLPRCMPGE------------------SVLLTQTLQTRQPTLTHRADDLFLWQRDPLL 256 A R + ++ Q + + +P + A + R + Sbjct: 192 AAGGDRKLAVRASRNIRKEAITDAAGGISDSIVRQVIVSGRPVIVSDALADTQFGRSDSV 251 Query: 257 LLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRIAIAVGNAD 315 + + S + PL GAL + + LF LL A + ++ + NA Sbjct: 252 IAM---KLSSVMCAPLLSQGQIIGALYVGNDKIKHLFDRAQLDLLSIFASQASLILQNAM 308 Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 ++ + L E H + G+II +M ++ +++ VA +D +VLI G Sbjct: 309 LLNALRADKAKLVAELH--------DKKFGEIIGACPSMLEVFRKLQKVAATDISVLITG 360 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 ETGTGKE+IAR +H+ SPR P V INC AIP +L+ESELFGH KGAFTGAI + G+F Sbjct: 361 ETGTGKELIARELHRRSPRDGGPFVTINCGAIPENLIESELFGHVKGAFTGAIASRPGKF 420 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 +IAD GTLFLDEIG+LPL LQ KLLR LQER + R+G S+ V++R++AATNR+L + + Sbjct: 421 QIADKGTLFLDEIGELPLNLQVKLLRALQERVVFRVGDSKPEKVDIRIVAATNRNLEEEI 480 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 FR DL+YRLNV L LPPLR+R +D+ ++AK K A + A+ AL + Sbjct: 481 RAGNFREDLYYRLNVVNLWLPPLRERGDDVLIIAKVLLSKYADELGSAVRGFSPAALSAI 540 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 + WPGN+R+LEN I++A++L L + ED L + P Sbjct: 541 KKYPWPGNIRQLENRIKKALVLCDQALLAV--------------EDLDLGPGAETAIMPL 586 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 +E +R+ +++ L NG A LG+ T+ +++ Sbjct: 587 EKAKEEFQRRYVLEALERNNG---NRTQTARDLGVDPRTIFRYLEK 629 >UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobiales RepID=NIFA_BRAJA Length = 582 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 177/558 (31%), Positives = 283/558 (50%), Gaps = 56/558 (10%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 + +I+ + + L+ +A+V + F + + L + + ++ + S Sbjct: 34 IYEISKILNAPGRLEVTLANVLGLLQSFVQMRHGLVSLFNDDGVPELTV-GAGWSEGTDE 92 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHR-ADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 C+P ++ + + + T + + A + D +L + + + + +P+ Sbjct: 93 RYRTCVPQKA--IHEIVATGRSLMVENVAAETAFSAADREVLGASDSIPVAFIGVPIRVD 150 Query: 276 NHTPGALLLAH--TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQ 333 + G L + S+ E + +LL +A+ I + R +E + + Sbjct: 151 STVVGTLTIDRIPEGSSSLLEYDARLLAMVANVIGQTI---KLHRLFAGDREQSLVDKDR 207 Query: 334 LSEQL---------LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 L +Q L II S A+ LL+++ +VA+S+STVL+ GE+GTGKE++ Sbjct: 208 LEKQTVDRGPPARERKQLQAHGIIGDSPALSALLEKIVVVARSNSTVLLRGESGTGKELV 267 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A+AIH+ S R +P VK+NCAA+P ++LESELFGH+KGAFTGA++ +GRFE+AD GTLF Sbjct: 268 AKAIHESSVRAKRPFVKLNCAALPETVLESELFGHEKGAFTGAVSARKGRFELADKGTLF 327 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG++ Q KLLRVLQE+E ER+G + TI V+VRVIAATNR+L + V +FR+DL Sbjct: 328 LDEIGEISPPFQAKLLRVLQEQEFERVGSNHTIKVDVRVIAATNRNLEEAVARSEFRADL 387 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YR++V PL LPPLR+R DIPLLA+ F +K R++ + A+ LMS +PGNV Sbjct: 388 YYRISVVPLLLPPLRERRSDIPLLAREFLRKFNSENGRSL-TLEASAIDVLMSCKFPGNV 446 Query: 565 RELENVIERAVLLTRGNSL---------------NLHLNVRQSRLLPTLNEDSALRSSMA 609 RELEN IER L+ G S+ L + + P S+ Sbjct: 447 RELENCIERTATLSAGTSIVRSDFACSQGQCLSTTLWKSTSYGKTDPAAPMQPVPAKSII 506 Query: 610 QLLHPTTPENDEEE-------------------RQRIVQVLRETNGIVAGPRGAATRLGM 650 L P E R+R+V + ++ + A AA LG+ Sbjct: 507 PLAETAPPPQAVCEPGSLAPSGTVLVSGARMADRERVVAAMEKSGWVQA---KAARLLGL 563 Query: 651 KRTTLLSRMQRLGISVRE 668 + +++ GI ++ Sbjct: 564 TPRQVGYALRKYGIEIKR 581 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 181/575 (31%), Positives = 285/575 (49%), Gaps = 51/575 (8%) Query: 133 SWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSM 192 +WL++ +++ + + K L I+ +++ L+ +A+V + + ++ Sbjct: 33 NWLDECMTELSPKTMHKRDLGCSGLYRISKVLITSASLEIKLANVINTLPALLPMRRGAI 92 Query: 193 VL----GDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF 248 V+ G+ F + A H A + + + P + Sbjct: 93 VVVGAEGEPETTATFGVEPPSSGARHIA--------AKAAIDRIVAKGAPLVVPDTCKSE 144 Query: 249 LWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFS----EENCQLLQHIA 304 L+Q D L +++ G + + +P+ T G L + + EE + L +A Sbjct: 145 LFQ-DELQSIVSGTGQVTFIGVPMKADQETLGTLWIDRAKDGAATRTQFEEEVRFLSMVA 203 Query: 305 DRIAIAV-----GNADAWRSMTDLQESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLL 358 + A AV + D+ + + + +L E I I+ +S A+ ++ Sbjct: 204 NLAARAVRLNGHESRDSRPIGEEGDRKISGGDKELPEPTRQRPTRIDWIVGESPALRQVV 263 Query: 359 QQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFG 418 + V +VA+++S VL+ GE+GTGKE A+AIH+LSPRR KP VK+NCAA+ A +LESELFG Sbjct: 264 ESVKVVAQTNSAVLLRGESGTGKEFFAKAIHELSPRRKKPFVKLNCAALSAGVLESELFG 323 Query: 419 HDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIP 478 H+KGAFTGAI+ GRFE+ADGGTL LDEIG++ Q KLLRVLQE E+ER+GG++T+ Sbjct: 324 HEKGAFTGAISQRAGRFELADGGTLLLDEIGEISPAFQAKLLRVLQEGELERVGGTKTLK 383 Query: 479 VNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR 538 V+VR+I ATN+DL V + +FR+DL+YR+NV PL LPPLR+R DIP LAK F + R Sbjct: 384 VDVRLICATNKDLETAVAEGEFRADLYYRINVVPLFLPPLRERNGDIPRLAKVFLDRFNR 443 Query: 539 HMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL--------------- 583 NR ++ AL L +PGNVRELEN + R L R ++ Sbjct: 444 ENNRNLE-FTPAALEILSRCKFPGNVRELENCVRRTATLARSATIVPSDFSCQNDQCFSS 502 Query: 584 ----NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE-----ERQRIVQVLRET 634 + L S A L +P P +R+ ++ + + Sbjct: 503 MLGKTADRPLGSHSLNGLAMSKRLPVESPASLGYPAGPGGLTVAPHLSDRELLISAMEKA 562 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + A AA LG+ + ++R I V+++ Sbjct: 563 GWVQA---KAARILGLTPRQVGYALRRHHIQVKKI 594 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 161/365 (44%), Positives = 226/365 (61%), Gaps = 18/365 (4%) Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSE---QLLSNLGIG-DIIYQSQAMED 356 + A A+ LQE+L++ E +L S +I S AM+ Sbjct: 91 TAVEALKAGALDYLIKPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQH 150 Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 LL ++ +VA SD+TVLI G++GTGKE++ARA+H S R DKPLV +NCAA+ SLLESEL Sbjct: 151 LLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCAALNESLLESEL 210 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FGH+KGAFTGA GRF ADGGTLFLDEIGD+ +Q +LLR +QERE++R+G ++T Sbjct: 211 FGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQT 270 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 I V+V +IAAT+RDL + V +FR DL+YRLNV +E+P LR R EDIPLLA HF ++ Sbjct: 271 ISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRF 330 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP 596 A +A+ +A+ L+ +DWPGN+RELEN IERAV+L G ++ R LP Sbjct: 331 AERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYIS-------ERELP 383 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 + +++ + + P + E++ I+ L +T G AA +LG+ R TLL Sbjct: 384 LAIAATPIKAENSAEIQPLV----DVEKEVILAALEKTGG---NKTEAARQLGITRKTLL 436 Query: 657 SRMQR 661 +++ R Sbjct: 437 AKLSR 441 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 151/343 (44%), Positives = 208/343 (60%), Gaps = 9/343 (2%) Query: 324 QESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 + +L +EN L QL + II+ SQ M L VA S +TVL+ GE+GTGKE Sbjct: 121 RRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKE 180 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 ++AR IHQLSPR +P++ +NC A+P SL+ESELFGH+KGAFTGA + GRFE ADGGT Sbjct: 181 LLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGT 240 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDEIG+L + +Q KLLR LQERE +R+GG+ I +VR+I+ATNRDL MV++ +FR Sbjct: 241 LFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFRE 300 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRLNV + +PPLR+R EDIP L HF ++ A + I I +EA LM +D+PG Sbjct: 301 DLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPG 360 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 NVRELEN+IERAV++ R + + + L + + Sbjct: 361 NVRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGE-----GRLRGAIENL 415 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 E+Q I + + AA LG+ L ++++ G+ Sbjct: 416 EKQMIQDAMEKAG---DHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 157/362 (43%), Positives = 211/362 (58%), Gaps = 13/362 (3%) Query: 313 NADAWRSMTDLQESLQQENHQLSEQLLSNLGI---GDIIYQSQAMEDLLQQVDIVAKSDS 369 N D S+ Q ++ EQ + II +S+ M +L + ++ VA+S + Sbjct: 105 NLDELESVVMRALEYQALKVRMPEQPVDEYPHFLCSTIIGRSRQMLNLFEMIEKVAESSA 164 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKE+ ARAIHQLS R K V +NCAAIP LLESELFGH KG+FTGA Sbjct: 165 TVLIQGESGTGKELAARAIHQLSSRSSKNFVPVNCAAIPDDLLESELFGHVKGSFTGAYA 224 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 GRFE+AD GTLFLDEIGD+ LQ KLLRVLQ +E E +G +R+ V+VR+IAA+N+ Sbjct: 225 NRIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQAKEFEPVGSTRSQKVDVRIIAASNK 284 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 +L + V R FR DL+YRL+V P+ +PPLRDR EDIPLL HF + R R + Sbjct: 285 NLDEQVATRDFREDLYYRLSVIPITIPPLRDRREDIPLLINHFQGQFNRDRRRLVKGFTR 344 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 EAL L ++DWPGNVRELEN++ER + + + + + T+ S Sbjct: 345 EALEMLCNYDWPGNVRELENLVERMITMKESGFITVDDLPEKYLAPRTVVAPPLSVSGSV 404 Query: 610 QLLHPTTPEN-------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + PE D E I+Q L T G + AA L +KRTTL+ ++++ Sbjct: 405 PVGKELPPEGICLNSAVDAFENGLIMQALHRTGG---NKKEAAALLNLKRTTLIEKLKKK 461 Query: 663 GI 664 + Sbjct: 462 NL 463 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 172/446 (38%), Positives = 248/446 (55%), Gaps = 25/446 (5%) Query: 236 RQPTLTHRADDLFLWQRDPLLLLLAS-NGCESALLIPLTFGNHTPGALLLAHTSSTLFSE 294 ++ + DL + + D + LL A+ S ++ LT A+ T + + Sbjct: 46 KEHHIDLVITDLRMPKVDGMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYIT 105 Query: 295 ENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAM 354 + + + + V A R + + + Q II +S + Sbjct: 106 KPFD-----QNEVRVVVKKALRTRDLASADAT----RDVSAAQPRGGSDRFGIIGESPPI 156 Query: 355 EDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLES 414 ++L ++ VA + +TVLI GE+GTGKE++ARA+H+ S RRD+P +K+NCAAIP L+ES Sbjct: 157 QELYAILERVADTPTTVLISGESGTGKELVARALHENSGRRDRPFIKVNCAAIPKDLMES 216 Query: 415 ELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGS 474 ELFG+++GAFTGA+ + GRFE+A GGTLFLDEIG++P E+Q KLLRVLQE E ER+GG Sbjct: 217 ELFGYERGAFTGAVASKPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGI 276 Query: 475 RTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQ 534 +TI V+VR++AATNRDL + + FR DLFYRLNV P+ LP LRDR DIP L HF Sbjct: 277 KTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVA 336 Query: 535 KMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRL 594 K + ++I++I EAL +L S WPGN+RELENV+ERA+L G + L + R Sbjct: 337 KFNARLKKSIESIEPEALERLASHAWPGNIRELENVVERALLFADGARIRLDDLPEEIRG 396 Query: 595 LPT------------LNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPR 642 T + SA S+ L + ER I + L++T+G V Sbjct: 397 GATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTHGNV---T 453 Query: 643 GAATRLGMKRTTLLSRMQRLGISVRE 668 AA L + R L +M+ L + R+ Sbjct: 454 HAARLLKISRKGLQLKMKELNLRERD 479 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 140/341 (41%), Positives = 211/341 (61%), Gaps = 12/341 (3%) Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 ++ L +N L E+L +++ S M + + ++ VA S ++VLI GETGTGK Sbjct: 119 REKQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGK 178 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E++A AIH S R KP V ++CAA+ +LESELFGH+KGAFTGAI + +GRFE+ADGG Sbjct: 179 ELVAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGG 238 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDE+ ++ L++Q KLLRVL++ E ER+GG +TI V+VR IAATNR+L + V + +FR Sbjct: 239 TLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFR 298 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DLFYRLNV +++PPLR+R +DIP+L+ +F K A+ + I EA++ L+S W Sbjct: 299 EDLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQ 358 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GN+REL+N IERA++L + +++++ + + P E Sbjct: 359 GNIRELQNTIERAIVLCKSDTISVDHLPESIM---------PDNEYIPVIKIPIGTTLKE 409 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 E++ I + L+ TNG + AA LG+ + + + Sbjct: 410 AEKEIIQRTLQITNG---SKQSAAKILGISTRKIEYKTKEW 447 >UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQ47_HALO1 Length = 665 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 181/535 (33%), Positives = 249/535 (46%), Gaps = 65/535 (12%) Query: 174 IADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTL 233 + D R + L V+ + + A G Sbjct: 154 LGDELRHLDDRAQLDRVACAAVRDALAAERAYLLVPDGAGRLQVRAVAGVGADA------ 207 Query: 234 QTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAH----TSS 289 Q P L H D + + + L +G +A+ PL H L+ Sbjct: 208 QRPAPALAHSFLDKVVREGKAVAL---EDGGVAAVAAPLFGAGHEAPVALVYAERGEAGR 264 Query: 290 TLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIY 349 F + L +A ++ A + DA + +L EN +LSEQL + Sbjct: 265 ASFDTVDILALGCVAHVVSAAQVSFDA-------RAALAVENRELSEQLGGRA----FVG 313 Query: 350 QSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPA 409 S A E +L+ V V S++TVL+ GE+G+GKE++ARAIH S R P + INCAA+ Sbjct: 314 SSPAAETVLRFVSKVGPSEATVLLTGESGSGKEMVARAIHDASRRASAPFIAINCAALTE 373 Query: 410 SLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIE 469 +L+ESELFGH++GAFTGA GRFE+AD GTLFLDE+G+LPL Q K LRVL+E+ E Sbjct: 374 TLIESELFGHERGAFTGASERKAGRFELADKGTLFLDEVGELPLSCQTKFLRVLEEQVFE 433 Query: 470 RLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLA 529 R+GG RTI V+VRV+AATNRDL MV +FR DL+YRL+V +PPLR R DIP+LA Sbjct: 434 RVGGGRTIAVDVRVVAATNRDLPSMVRQGRFREDLYYRLSVIHTVVPPLRARTSDIPVLA 493 Query: 530 KHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN-SLNLHLN 588 +HF + + + R + EAL L WPGNVREL N +ERAV+L G L HL Sbjct: 494 EHFLARFRKQVARRVAGFSPEALAALTRHPWPGNVRELRNAVERAVVLGEGPWILPAHLP 553 Query: 589 VRQSRLLPTLNEDSALRSSMAQLLHPTTPE------------------------------ 618 + L S+ A + P Sbjct: 554 PDVLAAGAAPPPPAGLVSAPALPVDPAAAGPGASIGGGELGANAAPGWGEGVSEGGPGAA 613 Query: 619 -------NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 E ER+ I+ L+ T G AA L + R+TL +++ IS+ Sbjct: 614 GAAGARPLRELEREGIIAALQATGG---NKVQAAALLQIDRSTLYKKLKDYDISL 665 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 142/326 (43%), Positives = 203/326 (62%), Gaps = 11/326 (3%) Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 ++I Q + M ++ + + VA++ +TVLI GE+GTGKE+IA AIH S R+DKP Sbjct: 139 EQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIASAIHAKSTRKDKPF 198 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 ++INCAA+ L+ SELFGH+KGAFTGA+ +G FE A GGTLFLDEIGD+ Q L Sbjct: 199 IQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLDEIGDISPTTQVSL 258 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LR+L+ +R+GG+ TI +VR+I ATNRDL ++QFR DL+YRLNV L+ PPLR Sbjct: 259 LRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYYRLNVVSLQAPPLR 318 Query: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 DR DIPLL ++F ++ N+ ID + +A+ L ++DWPGN REL N+IE AV+ +R Sbjct: 319 DRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCRELANIIEHAVIFSR 378 Query: 580 GNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVA 639 G +L+ Q R ++ R S L+ T + E I +VL E+N + Sbjct: 379 GRTLDKDSLPSQIR--------TSDRHSSGLTLNLATATLADAESALIKKVLEESNWNL- 429 Query: 640 GPRGAATRLGMKRTTLLSRMQRLGIS 665 + AA L + R TL +M++ ++ Sbjct: 430 --KKAAELLDIARGTLYGKMEKYHLT 453 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 143/403 (35%), Positives = 219/403 (54%), Gaps = 16/403 (3%) Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLFSE---ENCQLLQHIADRIAIAVGNADAW-RSMTD 322 +P + + + + F ++ +L + I V + A + Sbjct: 180 FCELPESADDIKTEVVEINGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQ 239 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L L ++L++ II ++ L + + +A ++TVLI GE+GTGKE Sbjct: 240 LNSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKE 299 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH-RGRFEIADGG 441 ++A A+H S R +K+NCAAIP +L E+ELFG+ +GAFTGA G+FE+A+ G Sbjct: 300 LVAHALHVESGR-PGSFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNG 358 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 T+FLDEIGD+PL +Q KLLRVLQE+E+ERLG +T +NVRVIAATN++L ++++ ++FR Sbjct: 359 TIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFR 418 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL+YRLNV L +P LR+R ED+PLL K+F +K + + I E + M++ WP Sbjct: 419 EDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWP 478 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GN+RELENV+ER L G + + + LP L++ L T + Sbjct: 479 GNIRELENVLERCFNLVEGKVI-------EKKYLPPYILGEELKNKEFPLGQSLTNLLEA 531 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E++ I L + G AA LG+ R L R++ + Sbjct: 532 YEKELIKAALLKAKG---NKSKAANLLGISRQWLHKRLKYFNL 571 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 211/358 (58%), Gaps = 9/358 (2%) Query: 305 DRIAIAVGNADAWRSMTDL--QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 D I D R++ Q+ L + +E+ ++ II S M+++ + + Sbjct: 102 DYITKPFDLDDITRTINRFFEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIG 161 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 +VA SD+TVLI GETGTGKE++A IH S PLVK+NCAA+P +LLESELFGH+KG Sbjct: 162 LVAASDATVLITGETGTGKELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKG 221 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 +FTGA +GRFE+A GT+FLDEIG++ L Q KLLRVLQERE ER+GGS TI V+ R Sbjct: 222 SFTGADRQRKGRFELAHKGTIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTR 281 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 VIAATN+ L + V +FR DLFYRLNV + LPPLR+R EDIPLL +F QK H + Sbjct: 282 VIAATNKKLEEEVAAGKFREDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDG 341 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 +I EA++ LM DWPGNVRELEN IERAV+L +G + H V + Sbjct: 342 PPASISEEAIKVLMEHDWPGNVRELENTIERAVILAQGGVITTHHLVFSQ----IRTGRN 397 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 S + E + I++ L + G A AA L + + L +++ Sbjct: 398 IDLSEVIDKTRSLDEAMRIIESKIILEALEKAKGDHA---LAAEILDISESELKRKLR 452 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 160/347 (46%), Positives = 220/347 (63%), Gaps = 18/347 (5%) Query: 319 SMTDLQESLQQENHQLSEQLLS----NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 LQE+L++ E + ++ +S AM+ LL ++ +VA SD+TVLI Sbjct: 109 DFDRLQETLEKSLAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIH 168 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 G++GTGKE++ARA+H S R DKPLV +NCAA+ SLLESELFGH+KGAFTGA GR Sbjct: 169 GDSGTGKELVARALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGR 228 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 F ADGGTLFLDEIGD+ +Q +LLR +QERE++R+G ++T+ V+VR+IAAT+RDL Q Sbjct: 229 FVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQE 288 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 +FR DL+YRLNV +E P LR R EDIPLLA+HF Q+ A +A+ +A+ Sbjct: 289 ASAGRFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDL 348 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 L+ + WPGN+RELEN IERAV+L G ++ R LP + A+ AQ + P Sbjct: 349 LIHYAWPGNIRELENAIERAVVLLTGEYIS-------ERELPLAIANQAMPLMPAQAIQP 401 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 E E++ I+ L +T G AA +LG+ R TLL+++ R Sbjct: 402 LV----EVEKEVILAALEKTGG---NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 157/329 (47%), Positives = 211/329 (64%), Gaps = 8/329 (2%) Query: 336 EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 E+ L ++ S+ M +L QV VA + +TVL+ GE+GTGKE++ARAIH SPRR Sbjct: 164 EEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRR 223 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 ++P V I+CAAIP LLESELFGH+KGAFTGAI GRFE+A+GGTLFLDE+G++P + Sbjct: 224 EQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAV 283 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q KLLRVLQER+ ER+GG T+ V+VRV++ATNR+L QMVE +FR DL+YRLNV P+ L Sbjct: 284 QVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILL 343 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLRDRP D+ LA+ F ++A M+RA+ + EAL L WPGNVRELENVIE+A+ Sbjct: 344 PPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQAL 403 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETN 635 + G + R P A + T ++ ERQ I+ + Sbjct: 404 VFAEGELVRPRDLPEGVRKAP-----PAPSLPVPSGDRSLTDILEDLERQLILAAYEKAR 458 Query: 636 GIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 G+ A LG+K + L ++++ GI Sbjct: 459 GV---KAETARLLGIKPSALYYKLEKYGI 484 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 162/567 (28%), Positives = 280/567 (49%), Gaps = 50/567 (8%) Query: 107 THGSRFTSQDCTLF-NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVL 165 T G + + + + L+ I TP+++ + ++ + E D ++ +++NA Sbjct: 61 TEGKKESQRRINYYGKTLSVIKTPIIEPTIENQCHLGNYYIFEDISDSVKLKRELSNA-- 118 Query: 166 SHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGE 225 A + + A +V+ DH N + + S + Sbjct: 119 ---------RSSANAMENVLEKAYDGIVMIDH--NGIITKFNSAYQQFTGISEQEALGKH 167 Query: 226 SVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLA 285 + + + + T + + + + ++ +P+ G L Sbjct: 168 VTEVIENTRMHKVLETGKPEIGEIQKIKGCEMVATR--------VPIYEEGEIVGVL--- 216 Query: 286 HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG 345 LF + + ++ +A+R+ A D ++ E +L S Sbjct: 217 --GKVLF--RDIKEVKALAERLDAATNELDYYKG----------EVRKLK---GSKYNFE 259 Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +I+ S+ + + + I ++SDSTVLI GE+GTGKE+ A AIH S RR +++NCA Sbjct: 260 NIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRVNCA 319 Query: 406 AIPASLLESELFGHDKGAFTGAIN-THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AIP +LLE+ELFG++KGAFTGA G+FE+A+GGT+FLDEIGD+P ++Q KLLR LQ Sbjct: 320 AIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQ 379 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 ERE++R+G R I ++VR+IA+TNR+L Q++ +FR DL+YRLNVF + +PPLR+ +D Sbjct: 380 EREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDD 439 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 + L + + M ++ + +EA + L S+ WPGN+REL+NV+ER++ + +GN + Sbjct: 440 LEKLINFIIKDLNDEMGLNVNGVSSEANKILNSYHWPGNIRELKNVLERSMNVAKGNIIT 499 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN----DEEERQRIVQVLRETNGIVAG 640 + E +S + ++ E E E+ I L++TN Sbjct: 500 KDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNN---N 556 Query: 641 PRGAATRLGMKRTTLLSRMQRLGISVR 667 + AA L + R+ L +++ IS + Sbjct: 557 KKKAAELLNIHRSGLYKKLEEYNISDQ 583 >UniRef50_Q7UK84 Probable two-component response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UK84_RHOBA Length = 654 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 172/559 (30%), Positives = 269/559 (48%), Gaps = 42/559 (7%) Query: 115 QDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLD-DL 173 D LA + L WL Q A RL + + AV LD D L Sbjct: 125 ADSDTLKMLATALGRFL--WLQRNHQNDARRLWQTSKMLQHA------AVWQQLDSDAQL 176 Query: 174 IADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTL 233 +A +A ++ L D R + + + + ++ + L Sbjct: 177 LASMADCACEVLNCERATIFLWDKRTKKLIGRPAIGIEGGVLE-----VEDNAGIVGEAL 231 Query: 234 QTRQPTL--THRADDLFLWQRDPLLLLLASNGCESALLIPLT-FGNHTPGALLLAHTSST 290 + P D+ + +R S L +P+ + G + Sbjct: 232 HSGSPRWWSAGGTDEGRVNRRIDQAQNFT---TRSLLAVPMVNSRDQVIGVFEGINARPG 288 Query: 291 -----LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG 345 F + + L +A +IA+ + +T+ ++ L ++ Q Sbjct: 289 DHRNESFDAADVRTLTELAMHASIAIDSYRTRTDLTETRDRLVEQAAQSK---------- 338 Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +I +++++ + VA +D +VL+ G GTGKEV+A+ IH S RR+ P V +NCA Sbjct: 339 PLIGNHHSIQEIRRNATKVAPTDLSVLVLGSNGTGKEVLAQHIHYQSERRNGPFVAVNCA 398 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 A+ +LLESELFGH+KGAFT A +T G+FE+A+GGTLFLDE+GD+ Q KLLRVL+E Sbjct: 399 ALVETLLESELFGHEKGAFTDASDTRVGKFELANGGTLFLDEVGDMSAGGQAKLLRVLEE 458 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 + + R+GGSR IPV+VRVIAATN+ L +++ ++FR DLF+RLNV L LPPL R +D+ Sbjct: 459 KVVVRVGGSRPIPVDVRVIAATNQPLQELISAKRFREDLFFRLNVVSLTLPPLSHRGDDV 518 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 LA+HF R + RA+ A ++S DWPGNVREL N +ER LT + + Sbjct: 519 MELAEHFLVDFCRQIGRAVPTFAASARDAMLSHDWPGNVRELRNTVERICYLTTTDVVEA 578 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 + + P+ S + +M + E + Q I +++ G + AA Sbjct: 579 SDLM----MSPSATRASTVSPTMDDVDGNLNSATREFQIQHIERLIASCGGNM---TEAA 631 Query: 646 TRLGMKRTTLLSRMQRLGI 664 +LG+ R+ L +M++LG+ Sbjct: 632 GKLGLHRSNLYRKMRQLGM 650 >UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZC1_DESOH Length = 926 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 182/510 (35%), Positives = 265/510 (51%), Gaps = 36/510 (7%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 +DI + ++ D L + + + +FG ++ + +L + + Sbjct: 447 FIDIISELMPGPAPDRLFTRLVQATNRYFGAERGALFWFSDTPKQTPALRAACNL-TETE 505 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN 276 L+ + + L R D DP ++ L +P Sbjct: 506 IFSNAFRSNLALVFDAWREGRSILVRRGD----RSDDPYRE-------KAILCLPFQIEG 554 Query: 277 HTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNA-DAWRSMTDLQESLQQENHQL 334 G L + + F+ + L + + + +A D R L+ L Sbjct: 555 KPRGVLYHDNAYVTDCFNFLDPAQLNRLVHTLGSYIEHAWDLSRGFEKLRPPLAV----- 609 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 + G +I+ +S ++ +L QVD VA +DSTVLI GETG GKE++AR IHQ S R Sbjct: 610 ---PSTVTGTVEIVGESSRIKAVLTQVDQVAPTDSTVLILGETGVGKELVARRIHQQSRR 666 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 D PL+ ++ AIP L+ESELFGH+KGAFTGA +G E+A GTLF+DE+G++P Sbjct: 667 CDMPLIVVDPTAIPEGLVESELFGHEKGAFTGADRQKKGLLELAHQGTLFIDEVGEIPKS 726 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 +Q KLLR LQE+ I+RLGG++ + + R+IAATNRDL V +FR DL+YRLNV P+ Sbjct: 727 IQVKLLRALQEKTIQRLGGTKPLFSDFRLIAATNRDLAGQVAAGRFREDLYYRLNVIPIT 786 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 +PPLR+R +DI LLA F ++ + NR + E ++L ++ WPGNVRELENVIER Sbjct: 787 VPPLRERKQDIVLLAACFLRRHSLRHNRPAMVLSPEVQQRLCAYPWPGNVRELENVIERG 846 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 VLL+ G+ L L L +R D P DE +R+ I VL +T Sbjct: 847 VLLSTGDHLELDLPAGHTRPGADPFTD--------------LPTLDELQRRYIHHVLEKT 892 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 G +AGP GAA LGMKRT+L +RM+RL + Sbjct: 893 GGKIAGPDGAAKILGMKRTSLYNRMKRLNV 922 >UniRef50_Q12K16 DNA-binding protein Fis / transcriptional regulator, Fis family n=23 Tax=Alteromonadales RepID=Q12K16_SHEDO Length = 495 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 170/456 (37%), Positives = 253/456 (55%), Gaps = 38/456 (8%) Query: 214 HCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT 273 H P ES QT + + W++D + + P+ Sbjct: 67 HSHADGSPYPQES---CPIYQTLKDGVAREVAQDVFWRKDGSSFPVLYSST------PVY 117 Query: 274 FGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQ 333 G+ G + + + I+ + + A + L E L ENH+ Sbjct: 118 QGSVMVGVIAI---------------FRDISVQKQTELSLRQALNQVQALSEQLAAENHE 162 Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L + L G I S M LLQQ+ +VA ++STVLICGE+GTGKE++AR +HQLS Sbjct: 163 LQQALADKTGNMGIKGSSPVMAHLLQQIHLVANTNSTVLICGESGTGKELVARNLHQLSR 222 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 R+ K +V +NCAA SLLESELFGH+KGAFTGA +G+FE AD GTLFLDE+ +L L Sbjct: 223 RKHKLMVSVNCAAFSPSLLESELFGHEKGAFTGANTQRKGKFEQADKGTLFLDEVAELSL 282 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 E Q KLLRV+QE+E +RLGGS I +++R+IAA++ +L + VE FR DL+YRLNVFP+ Sbjct: 283 EAQSKLLRVIQEQEFQRLGGSSNIKIDIRLIAASHHNLLERVEQGLFRMDLYYRLNVFPI 342 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 +PPLRDR ED+P L + +++ + + I + + +L ++ WPGNVREL+N++ER Sbjct: 343 HVPPLRDRLEDMPELVESMLLNISKKLAKKITCVSQAGMAELKAYHWPGNVRELQNILER 402 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 +L++ + L++H + + + SA R ++AQ I L + Sbjct: 403 EAILSQASELDIHQLPFKEL---SKIKPSANRQTLAQAQAT-----------HIRHTLEQ 448 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 N ++G GAA +LG+ +TL S+MQ+LGI ++ Sbjct: 449 LNWQISGEHGAAKQLGLPASTLRSKMQKLGIVRQDT 484 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 145/338 (42%), Positives = 209/338 (61%), Gaps = 18/338 (5%) Query: 348 IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI 407 I++S M L VA S++TVLI GE+GTGKEV AR IH+ S R V +NCAA+ Sbjct: 138 IFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHENSNRSSGAFVAVNCAAL 197 Query: 408 PASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQERE 467 P +L+ESELFG++KGAFTGA+N G+FE+ADGGT+ LDE+G++PL LQ KLLRVLQE+E Sbjct: 198 PENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGEIPLHLQAKLLRVLQEKE 257 Query: 468 IERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPL 527 +ERLGG++ +NVR++A TN+ L + V++ FR DL+YRLNV +ELPPLR+R EDI Sbjct: 258 VERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNVISIELPPLRERKEDIME 317 Query: 528 LAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHL 587 LA F +K A+ + + +A++ L+ +DWPGNVRELE+ IERAV+L R ++ Sbjct: 318 LATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELEHTIERAVVLCRDGVISERN 377 Query: 588 NVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN------------DEEERQRIVQVLRETN 635 + D ++ T E+ E ER+ I++ L+ET Sbjct: 378 LFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGTIAEMERELIIKTLKETG 437 Query: 636 GIVAGPRGAATRLGMKRTTLLSRMQRL---GISVREVL 670 G AA LG+ TL +++ G+++ +++ Sbjct: 438 G---NRTKAADMLGITVRTLRNKLNEYKENGLNIEDII 472 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 131/347 (37%), Positives = 202/347 (58%), Gaps = 6/347 (1%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 ++ L++ L ++ + II S M ++L+ V++++STVLI GE+GTGKE+ Sbjct: 123 KKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKEL 182 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 IARAIH PR P V INC A+P +L ESELFGH KG+FTGA+ G F A GT+ Sbjct: 183 IARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGTI 242 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG+ Q KLLR LQ+ EI ++GG+++I V+VR+IAATN +L + V +FR D Sbjct: 243 FLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKD 302 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYR+NV + LP L++R EDIPLL +F + + + A+ L+++DWPGN Sbjct: 303 LFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPGN 362 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 +REL+N++ERAV L++ + + + N + ++ + T E+E Sbjct: 363 IRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLS---EQE 419 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 + IV+ + + G + LG+ TTL ++++ I + + Sbjct: 420 KNAIVEAMNKYGG---NQTKVSQVLGISTTTLWRKIKKYKIKPQHEI 463 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 137/353 (38%), Positives = 213/353 (60%), Gaps = 14/353 (3%) Query: 315 DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 ++ + +++ ++ Q E ++ +II +S + AK++S VLI Sbjct: 228 LLYKKIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNVLIR 287 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN-THRG 433 GE+GTGKE+ A AIH S R +K+NCAAIP LLESELFG++ GAFTGA G Sbjct: 288 GESGTGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIG 347 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 +FE+ADGGT+FLDEIGD+PL +Q KLLRVLQERE+ER+G +R+ ++VRVI+ATNRDL + Sbjct: 348 KFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEK 407 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 M+++ +FR DL+YRLNV + +PPLR+R EDI +L+++ +K+++ + + + EA+ Sbjct: 408 MIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEAMS 467 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH 613 LM++ W G VR+LEN+IERAV L N + + P + + + Sbjct: 468 CLMNYKWEGGVRQLENIIERAVNLVEHNEM----------IEPKHFPGNIVSNKYIVEDS 517 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 ++ E+ I++ L N AA +L + RT+L ++ + I++ Sbjct: 518 DLNKLINQVEKDIILETLIYCNW---NKTLAAKKLNISRTSLYEKIAKHNIAI 567 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 147/346 (42%), Positives = 214/346 (61%), Gaps = 15/346 (4%) Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 + E ++Q + LS + + D+I Q + + + + A +DS VLI GE+GT Sbjct: 310 IVKEIEKVRQFVNHLSGN-QAKITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGT 368 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH-RGRFEIA 438 GKE++A+AIH S RR+KP + INC IP LL SELFG+ GAFTGA G+FE+A Sbjct: 369 GKEMVAQAIHNESKRRNKPFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELA 428 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 +GGTLFLDEIG++ LE+Q LLRV+QE+E+ R+GG + IPV+VR+IAATN+DL + V+ Sbjct: 429 NGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKG 488 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 FR DLF+RLNV P+ LPPLR+R EDIPLL +HF +++A ++ I ++ L LM + Sbjct: 489 SFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALMQY 548 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE 618 DWPGN+REL+N+IER + L L E+ S +Q+ Sbjct: 549 DWPGNIRELQNMIERVLNQCTKPVLT----------AADLPEEIFQPSCSSQVRENVDIS 598 Query: 619 NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +E ++Q I++ L++ NG ++ AA LG+ R+T +M + I Sbjct: 599 RNEIKKQSIIEALKQCNGNIS---KAARYLGISRSTFYRQMDKWNI 641 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 147/356 (41%), Positives = 201/356 (56%), Gaps = 16/356 (4%) Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + D + L +EN L + +I S A++ + + +D A SD T Sbjct: 109 LKELDLLLQRALEKRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVT 168 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+ A+ IHQ S R DKP V +NCA + SLLESELFGH KGAFTGA + Sbjct: 169 VLIQGESGTGKELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAES 228 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G FEIA+GGTLFLDEIG+L + Q KLLRV+Q EI R+G +R I V+ R+IAAT+++ Sbjct: 229 RVGLFEIAEGGTLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKN 288 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L V++ +FR DL++RLNV L LP LR+R +D+ L +HF QK + + E Sbjct: 289 LPLEVKEGRFREDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPE 346 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 AL + +DWPGN+RELEN IER V+L GN +++ R + Sbjct: 347 ALHAMTLYDWPGNIRELENTIERTVVLADGNIISIEELPDNIR-----------GRTYEH 395 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 E E+ I+QVL+E N AA LG+ TL ++M+ I + Sbjct: 396 YGKNGEIALSEVEKNHIIQVLKEKNWH---KPLAAKTLGISLKTLYNKMKMYNIDL 448 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 146/414 (35%), Positives = 218/414 (52%), Gaps = 11/414 (2%) Query: 256 LLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNAD 315 + L ++G E + + + T +IA A + Sbjct: 53 MRLPGADGLEVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSL 112 Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 R + Q + +++ +L E++ + +I+ S +M + + + AK+DS+V+I G Sbjct: 113 VERFL--CQTAHVEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYG 170 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 E+GTGKE++A A+H SPR DKP +K+NCAAIP +LLE+E+ G++KGAFTGA+ +G+ Sbjct: 171 ESGTGKELVANAVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKL 230 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E ADGGT F DEIGD+ LQ KLLRVL+ R ER+GG+ + V++R I AT R L + Sbjct: 231 ETADGGTFFFDEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEI 290 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 +FR DL+YR+NV P+ LPPLR+R +DIPLL F R R + I EA+ L Sbjct: 291 RKGKFREDLYYRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELL 350 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 S+ +PGNVREL++ +E AV + S L + E S Sbjct: 351 RSYPYPGNVRELKHAVEMAVTFCSDRVIT------PSCLPGEIREGSPALQGWRGDAGAL 404 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 E ERQ I+ VL++T G AA LG+ R TL +++ + + Sbjct: 405 ESSRKETERQTIINVLKKTGGR---KMAAAKALGISRETLWRKLKEYNVDTDAI 455 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 174/522 (33%), Positives = 253/522 (48%), Gaps = 36/522 (6%) Query: 164 VLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMP 223 + ++LD L+ V I ++ L D R S+ H L R Sbjct: 76 LTRGVELDALLVTVVDSIVEHLDAERGTLYLVDGRSRTLTSVVA------HLPELERIRL 129 Query: 224 GESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT-FGNHTPGAL 282 + T+ + + +D + D + S L +P+ G L Sbjct: 130 DFGQGVAGTVAAQG-QIIAVSDPGADPRFDASIDRQTGFSTRSMLALPIRDSAGEVIGVL 188 Query: 283 LLAHTSSTLFSEEN---CQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL 339 L + F+ + L A ++ A R+ + L+ E + E+ Sbjct: 189 QLLNAGRGQFTLADQAKATTLATSAGQVLQATSLYADLRARSPLEREADPEPSEAVEEPD 248 Query: 340 S---------NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 I+ +S+AM + V A +D+TVLI GE+GTGKE+IARA+H Sbjct: 249 PSQSQIRPGPKYTFNQIVGESRAMRQVYAIVRKAAGTDATVLITGESGTGKELIARAVHV 308 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 SPRR++ VK++C +P +L+E+ELFGH++GAFTGA T G+FE+ADGGTLF+DEIG+ Sbjct: 309 NSPRREQAFVKVDCTTLPEALIENELFGHERGAFTGAHRTAPGKFEVADGGTLFIDEIGE 368 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 LPL LQ KLLRVLQ+RE ER+GG+ TI ++RVI AT+RDL MV+ FR DL+YR+ V Sbjct: 369 LPLTLQGKLLRVLQDREFERVGGTTTIRTDIRVICATHRDLPAMVDAGAFREDLYYRVRV 428 Query: 511 FPLELPPLRDRPE-DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 P+ELPPLRDR D L +HF + R R I + A +L+ D+PGN+RELEN Sbjct: 429 VPIELPPLRDRGSADRLRLIEHFVDRYGRRHGRPIHRVTKAAQARLLEHDFPGNIRELEN 488 Query: 570 VIERAVLLTRGNSLNLHLNVRQSR------------LLPTLNEDSALRSSMAQLLHPTTP 617 IE AV+L+ ++++ R T ++ L T Sbjct: 489 CIESAVVLSDEGTIDVDDLPLAPRKAKRGRTQQGSVPTETGQSSGHSGPNLGLQLGDPTL 548 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 ER I V++ G AA RLG+ R TL ++ Sbjct: 549 SLAAIERAHIEAVVQACEG---NQSEAARRLGIGRNTLARKL 587 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 167/542 (30%), Positives = 270/542 (49%), Gaps = 32/542 (5%) Query: 122 WLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREI 181 + + S + ++ + ++ R L + +L DL+ L+ + E Sbjct: 102 PASPPRELIHTSNPDSHTSEL-PGVPGRELLLLRRLTAFSERLLGLYDLERLLEGLMDEA 160 Query: 182 HHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLT 241 ++L ++ + ++S + ++ + ++ ++ + Sbjct: 161 IEVTRADKGFLILMEN--GDPRVKVARNVSRENIEDAVEKDKISDSIIAKVVKEQKALIV 218 Query: 242 HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQLL 300 A D + + ++ L S + +PL G L + + F ++ +L Sbjct: 219 ADALDSPEFNKSESVVNLR---VHSVMCVPLMQKGDLFGVLYVGNDRLVNRFEPKSADML 275 Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 A + ++ + NA L L+ +N +L +L GDI+ Q M D+ ++ Sbjct: 276 TIFAAQASLILQNAM-------LVSDLKLDNTELRRKLEDQR-YGDIVGACQGMRDVYKR 327 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 +D +A +D +VLI GETGTGKE+IAR IH+ S R P + INC AIP +LLESELFGH Sbjct: 328 IDKIAPTDISVLITGETGTGKELIAREIHRRSTRAKGPFITINCGAIPENLLESELFGHV 387 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGA+ T G+F+ A GGTLFLDEIG++PL+LQ KLLR LQE+ + ++G +R PV+ Sbjct: 388 KGAFTGAVATKAGKFQAAIGGTLFLDEIGEMPLQLQVKLLRALQEKVVYKVGDNRGEPVD 447 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 +RV+AATN+ L V+ FR DL+YRLNV L+LPPLR+R ED+ +L + F QK AR Sbjct: 448 IRVVAATNKVLEDEVKKNTFREDLYYRLNVVTLKLPPLRERGEDVVVLGRFFLQKYAREF 507 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 + A + + WPGN+RELEN +++AV+L L Sbjct: 508 SSKARGFTPSATVSMRKYGWPGNIRELENRLKKAVVLADKPLLGPD-------------- 553 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 D L+ + + P +E +++ I +VL NG A LG+ T+ ++ Sbjct: 554 DLDLKPENLEPIMPLLQAKEEFQKRYINEVLARNNG---NRTKTAKDLGVDPRTIFRHLE 610 Query: 661 RL 662 +L Sbjct: 611 KL 612 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 151/357 (42%), Positives = 215/357 (60%), Gaps = 16/357 (4%) Query: 316 AWRSMTDLQESLQQEN--HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 A +MTDL E ++EN QLS L ++ S M + ++ A+SD+ V I Sbjct: 132 AVETMTDLSELDRKENELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFI 191 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 GE+GTGKE++ARAIH L PR D+P V+ NCAA+ +LLESELFGH KGAFTGA +G Sbjct: 192 YGESGTGKELVARAIHDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQG 251 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 RFE A GG +FLDEIGDLP+ +Q KLLRVL+ + ER+G +R + V+VR+I ATN+ L + Sbjct: 252 RFEAAHGGDIFLDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPE 311 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 ++ QFR DLFYR+NV P+ LP LR+R EDIPLLA +F Q++ ++ I + + LR Sbjct: 312 LISQGQFREDLFYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLR 371 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH 613 M + WPGNVREL++ +E A +L + P + + ++ Sbjct: 372 LFMDYSWPGNVRELKSSLEYAFVLADHGHIE-----------PEHLPHNVVVTAPPVAEP 420 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 + +RQ++VQ L + G AA LG+ R T+L+RM++ GI + V+ Sbjct: 421 RYGNPGHDSQRQQLVQALHQAGG---NKSEAARILGINRVTVLNRMRKHGIDMTRVI 474 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 143/359 (39%), Positives = 210/359 (58%), Gaps = 5/359 (1%) Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGD--IIYQSQAMEDLLQQVDIVAKSDS 369 +A SL QEN L +Q+ + II +S M+ +L+ V VA+S++ Sbjct: 107 DTIEAIIEKAKEHLSLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNA 166 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 +V I GE+GTGKEVIA+AIH S R P +K+NCAAIP +L+ESE FGH+KGAFTGA Sbjct: 167 SVFINGESGTGKEVIAQAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANF 226 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 GRFE+A GTL LDEI ++PL +Q KLLR +QE+E ER+GGS+ I V+VR+I+ +NR Sbjct: 227 KRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNR 286 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 D+ + + R DL+YRLNV P+ LPPLRDRPEDI LA +F +KM ++ Sbjct: 287 DMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSK 346 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 E++++L+ + WPGNVREL N++ERAV++T + + ++ ++ S Sbjct: 347 ESIKKLVGYAWPGNVRELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNT 406 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 P E E++ I++ L+ + A LG+ TL +++ + Sbjct: 407 LTSLPVGMTLQELEKRLIIETLQAQHN---NRTKTAEVLGISVRTLRNKLNEYNMKNER 462 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 164/443 (37%), Positives = 242/443 (54%), Gaps = 27/443 (6%) Query: 230 TQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTS 288 +Q D L R+ + +L ++ + + + A+ Sbjct: 54 DGLMQMAAHPYDLVLLDFALPDRNGIEILKEIRSRDTEISVIMITAYGTVENAVNAMQAG 113 Query: 289 STLFSE---ENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG 345 +T F + +N +LL + IA + +++EN QL L Sbjct: 114 ATNFIQKPWDNEKLLADVGAAIA---------------RRRVEEENLQLKRALKQRYNFE 158 Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +II +S+ M + V +A S STVL+ GE+GTGKE+IA+AIH S R+D+ V IN Sbjct: 159 NIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAIHMNSTRKDRAFVPINTG 218 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 ++P LLES LFGH KGAFT AI + +G FE+ADGGTLFLDEIG + +E Q K+LRVLQ+ Sbjct: 219 SMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEIGTMSMETQAKILRVLQD 278 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 R+ LGG + I V+VR+IAATN DL Q+V++ +FR DLFYRLNV ++LPPLR R D+ Sbjct: 279 RKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRLNVITIDLPPLRQRRLDV 338 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 PLL +HF +K + + + EALR L+ ++W GNVRELENVIERAV+L G S+ + Sbjct: 339 PLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRELENVIERAVVLANGPSITI 398 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 L + S+L + ++ ER+ IV +L + AA Sbjct: 399 DLLPDNV-----VGRGSSLSFVETRPDASLFEIMEDCERRIIVDMLEKVGW---NQTEAA 450 Query: 646 TRLGMKRTTLLSRMQRLGISVRE 668 + + +TL +++RL I +++ Sbjct: 451 EKFRIPLSTLNQKIKRLSIEIKK 473 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 151/365 (41%), Positives = 212/365 (58%), Gaps = 16/365 (4%) Query: 304 ADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQ---LLSNLGIGDIIYQSQAMEDLLQQ 360 +D + +A+ A +E L++EN L +Q L G II +S+AM+ + Sbjct: 113 SDEVLLALKKA-------SERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDL 165 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 + VA D+TVL+ GE+GTGKE++AR++H SPR L+ +NC IP +LLESELFGH Sbjct: 166 ITKVAAHDTTVLVTGESGTGKELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHV 225 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGA G EIA GTLFLDEIG+LP LQ KLLR+LQ+REI +G S T ++ Sbjct: 226 KGAFTGADKNKTGLCEIAHKGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTID 285 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 +R++AAT R+L V + FR DLFYRLNV + LPPLRDR EDIPLL + F Q+ + + Sbjct: 286 IRIVAATARNLEADVAEGVFREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKL 345 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 ++ I + AL +L++ WPGNVRELEN+IERAV+L G+++ Sbjct: 346 DKTITGLAPAALSRLLAHTWPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGP 405 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 AL + E++ I + L +T G + L + +LL++M+ Sbjct: 406 GDALAGFDGYSIKAAQKI---FEKRLIEKALAKTGG---NRTRTSKLLEISHPSLLAKMK 459 Query: 661 RLGIS 665 GI Sbjct: 460 EYGIE 464 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 154/365 (42%), Positives = 228/365 (62%), Gaps = 5/365 (1%) Query: 303 IADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 + R+ + NA ++ L + + + + S + + + D+I S A+ L +QV Sbjct: 99 FSCRLHPLLVNAQVEGAILFLTKPILLQEQEQSSRYGTRFSLDDVIGSSPAITALKEQVM 158 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 +AKS+STVLI GE+GTGKEV+A++IH+LS R P V INCAAIP +LLESELFG+++G Sbjct: 159 KIAKSESTVLIRGESGTGKEVLAQSIHRLSHRNKGPFVAINCAAIPEALLESELFGYEEG 218 Query: 423 AFTGAINT-HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNV 481 AFTGA GRFE+A GGTLFLDEIGD+PL LQ KLLRVLQER IER+GG+++I V+V Sbjct: 219 AFTGAKKGGKPGRFELARGGTLFLDEIGDMPLYLQAKLLRVLQERRIERVGGTKSIEVDV 278 Query: 482 RVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMN 541 R+IAAT++DL M+ + QFR DL++RLNV PL +PPLR+R ED+ L +++ K + + Sbjct: 279 RIIAATHKDLESMIANNQFREDLYFRLNVIPLYVPPLRERKEDLYELIQYYMYKFCKRLG 338 Query: 542 RAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN-- 599 + ++AL+++ + WPGN+RELEN++E V L G+ + + R + Sbjct: 339 KEPKRFSSQALKKIFDYHWPGNIRELENMVEYIVNLEIGDLVTISSLPASIREMSKDQRH 398 Query: 600 --EDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS 657 E+ L + + +E E Q I+Q L+ G R AA LG+ TL Sbjct: 399 DMEEEMKEPQTVSHLPKSLYKINEVEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYR 458 Query: 658 RMQRL 662 +++++ Sbjct: 459 KLEKM 463 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 178/567 (31%), Positives = 265/567 (46%), Gaps = 62/567 (10%) Query: 151 RDHHRVLVDITNAVLSHLDLDDLIADVAREIH--------------HFFGLASVSMVLGD 196 + VLV A++ + +DL+ ++A I F ++ + D Sbjct: 38 KKKEEVLVMENQAIVGVITKNDLVKNLATGIKWDTEVKYIMTRNVIRFKDHEDLT-GVRD 96 Query: 197 HRKNEKFSLWCSDLSASHCACLPR------CMPGESVLLTQTLQT-----RQPTLTHRAD 245 + + C L + LQ + +D Sbjct: 97 NMRFHGIKRAPVLNENEECLGLITVKSICDAFSNRLWHVVDYLQMVLNNLNEGVFILSSD 156 Query: 246 DLFLWQRDPLLLLLASNGCESA-------LLIPLTFGNHTPGALLLAHTSSTLFSEENCQ 298 L+Q + L +LA+ +S LL + G+ G + H ++ ++S Sbjct: 157 GEVLYQNNALAGILATQSAQSTQPEIPRELLQKIQSGS---GGDFVYHLNNKVYSVNVAP 213 Query: 299 L-LQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL-------SEQLLSNLGIGDIIYQ 350 + + + N +T+LQE L + N +L S+ + G+I Sbjct: 214 FPCNESEENKLVTIKNVTH---ITELQEQLSRANSKLNYLENTVSKISQEHYTFGNIFSV 270 Query: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 S ME +++ VA + +TVLI GE+GTGKE++A AIHQ S R+D PL+ INC AIP + Sbjct: 271 SPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRKDAPLITINCGAIPEN 330 Query: 411 LLESELFGHDKGAFTGAIN-THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIE 469 L ESE FG+ GAFTGA G FEIADGGTLFLDEIGDLPL +Q KLLR LQE Sbjct: 331 LAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQAKLLRALQEGSFY 390 Query: 470 RLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLA 529 R+GG + V+VR+IAATN++L ++V++ QFR DL+YR+NV LELPPLR++ EDI L Sbjct: 391 RVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELPPLREKTEDIMPLT 450 Query: 530 KHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNV 589 K F ++ I I + L + WPGNVREL+NVIER V+ + +++ Sbjct: 451 KRFIDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELKNVIERLVIFSTQGKISIKALP 510 Query: 590 RQSRLLPTLNEDSA-----------LRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 P + + + DE ER+ I+ L++ + Sbjct: 511 SYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELERKTILDSLKKHS--- 567 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGIS 665 A L + R+TL RM+ L I+ Sbjct: 568 FNKAKVARELNIPRSTLYYRMKVLNIN 594 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 147/316 (46%), Positives = 202/316 (63%), Gaps = 12/316 (3%) Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 ++ S AM LL + +VA SD+TVLI GE+GTGKE++ARA+H S R +PLV +NCA Sbjct: 140 GMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASSARSRRPLVILNCA 199 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 A+ SLLESELFGH+KGAFTGA GRF ADGGTLFLDEIGD+ +Q +LLR +QE Sbjct: 200 ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQE 259 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 RE++R+G ++T+ V+VR+IAAT+RDL + V +FR DL+YRLNV +++PPLR R EDI Sbjct: 260 REVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDI 319 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 P LA++F Q+ A +A+ +A+ L+ + WPGN+RELEN +ERAV+L G ++ Sbjct: 320 PPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRELENAVERAVVLLTGEYISE 379 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 P + S + E E++ I+ L T G AA Sbjct: 380 RELPLAITGTPVADAPHGDDSIQPLV---------EVEKEAILAALERTGG---NKTEAA 427 Query: 646 TRLGMKRTTLLSRMQR 661 RLG+ R TLL+++ R Sbjct: 428 RRLGITRKTLLAKLSR 443 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 154/341 (45%), Positives = 221/341 (64%), Gaps = 9/341 (2%) Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 ++ ++ ++ + +I+ QS+AM +L Q+ VA +DSTVLI GE+GTGKE++A +I Sbjct: 110 RQVSEVLNRIEARKLFPEIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSI 169 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H+ S R + VKINCAAIP +LLESELFG++KGAFTGA G+FE A+GGT+FLDEI Sbjct: 170 HRHSQRNGRRFVKINCAAIPDTLLESELFGYEKGAFTGAAARKPGKFEQANGGTVFLDEI 229 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 GD+PLE Q K+LRVL+E+E++RLGG R IPV+VRV+AATNR++ +MV D FR DLF+RL Sbjct: 230 GDMPLETQAKILRVLEEKEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRL 289 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVFP++LPPLR+RPEDIP L + F + ++ I A+ L + WPGNVREL Sbjct: 290 NVFPIQLPPLRERPEDIPFLIEEFMKFSSKE-----STISPPAMHILCAHQWPGNVRELR 344 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N +E ++L + HL + + L S + L E E+ +V Sbjct: 345 NAVESSLLFGKEVVEPEHLPPALAGSMAVPTPAGVLISGEDESL-DLDFRLQELEKGILV 403 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + L+ ++G+ A AA LG+K +L R+++ GI V ++ Sbjct: 404 EALKRSDGVQA---QAARLLGIKERSLWHRVKKYGIDVSQI 441 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 153/414 (36%), Positives = 224/414 (54%), Gaps = 40/414 (9%) Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 P+ GA+ + Q I + + + A + +LQ+ + Sbjct: 155 AAPIRREGEIIGAISIE---------------QDITELVRLNEELAHTTAHLHNLQQEM- 198 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 S ++ I S +++ + VA++D+TVLI GE+G GKE+ A+AI Sbjct: 199 ------SRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELFAQAI 252 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA-INTHRGRFEIADGGTLFLDE 447 HQ S R +KP + INC AIPA+L ESELFG+ GAFTGA G+ E+A GGTLFLDE Sbjct: 253 HQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGTLFLDE 312 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IG+LPLELQ KLLR LQER+ R+GG+ I VN R++AATNR L QMV D +FR DL+YR Sbjct: 313 IGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFREDLYYR 372 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 LNVF LE+PPLR+R ED+P L + F + + ++++ I E ++ L + WPGN+R+L Sbjct: 373 LNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWPGNIRQL 432 Query: 568 ENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT-------- 616 NVIER +L + +L +R ++ + + + A Sbjct: 433 RNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPIIRPSIA 492 Query: 617 ---PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 P + E++RI+ L T G + AA LG+ R TL ++M++ I+ Sbjct: 493 IAYPSSPANEKERILAALERTYG---NKKAAAELLGVSRGTLYNKMKKFNINEE 543 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 146/338 (43%), Positives = 209/338 (61%), Gaps = 16/338 (4%) Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 N ++ + DII QS+AM+ L +Q+ ++ S STVLI GE+GTGKE+IA++IH Sbjct: 310 NKYINR--TAKYTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHN 367 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH-RGRFEIADGGTLFLDEIG 449 S RR K V INC AIP SL+ESELFG+++GAFTGA G+FE+A+ GTLFLDEIG Sbjct: 368 NSNRRSKSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIG 427 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 ++PL++Q LLRVLQE I R+GG++ + V+VR+IAATN++L + +ED FR DL+YRL+ Sbjct: 428 EMPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLS 487 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 V P+ +PPLR+R DI +L +HF + A + + I I L+S+ WPGNVRELEN Sbjct: 488 VIPIYVPPLRERNGDIGILIEHFLKIKADKLGKLIPEIRKNIYENLLSYGWPGNVRELEN 547 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 IE V + S N + + D +L M L +E E++ I Sbjct: 548 CIENIVNMNGNTSFNFENRTIKKDV--NCYSDVSLEYDMCSL--------EELEKRAISI 597 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + + G ++ A LG+ R+TL ++++ I VR Sbjct: 598 CINQCGGNIS---KACRILGINRSTLYIKIKKYNIKVR 632 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 157/345 (45%), Positives = 211/345 (61%), Gaps = 15/345 (4%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + L E + +E+ G+ I+ +S AM ++L +V VA +D+TVL+ GE+GTGKE+ Sbjct: 146 KRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKEL 205 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARA+H S R DKP V +NCAAI +LLESELFGH +GAFTGA RG FE A+GGTL Sbjct: 206 VARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTL 265 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 F+DEIG+ Q KLLR LQE EI R+G S + VNVR+IAATN+DL + + +R+FR D Sbjct: 266 FIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFRED 325 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNV PL +PPLR+R ED+PLLA HF Q+ + + EA+ L++ DWPGN Sbjct: 326 LFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLTPEAVASLVAHDWPGN 384 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VRELEN+IE+A L G + ++R P L ++ ++ E Sbjct: 385 VRELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVTLADAV-----------EDTE 433 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 R+ I L + A LG+ TTL +M+RLGI RE Sbjct: 434 RRAITAALARCGNDLG---RVARDLGISGTTLWRKMKRLGIEARE 475 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 174/445 (39%), Positives = 244/445 (54%), Gaps = 35/445 (7%) Query: 224 GESVLLTQTLQTRQPTLTHRADDLFL---WQRDPLLLLLASNGCESALLIPLTFGNHTPG 280 ES + + P +T R + W P+L++ A ESA+ + G Sbjct: 45 DESEVDVVVTDMKMPKVTGRQVLERVKKSWPYIPVLIMTAFGSIESAVEL------MKYG 98 Query: 281 ALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS 340 A + FS + +LL I + AV A A R LQE ++ Sbjct: 99 AFDYI---TKPFSND--ELLLSIHN----AVELARAHRQYRLLQEVME-----------D 138 Query: 341 NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLV 400 G+ I+ +S+A+ D+L V+ A S STVLI GE+GTGKE+IARAIH SPR+D P V Sbjct: 139 RYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELIARAIHYTSPRKDNPFV 198 Query: 401 KINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLL 460 +NC A+ +LESELFGH+KG+FTGA+ RGRFE ADGGTLFLDEI +L +LQ KLL Sbjct: 199 SVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLL 258 Query: 461 RVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRD 520 RVLQER ER+GG I V++RV+AATN+DL MVE FR DL+YRLNV + LPPLR+ Sbjct: 259 RVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRE 318 Query: 521 RPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRG 580 R EDIPLL HF K+ TEAL L ++WPGN+R+LENV+E ++L G Sbjct: 319 RREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWPGNIRQLENVVESCLVLVPG 378 Query: 581 NSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAG 640 +N+ + R + + + + + ++ E I + L + + Sbjct: 379 TVINVDNLPAEIRDEESQFKSAV---DLLPVQLDLADTLEKIEAALIRRALVRADLV--- 432 Query: 641 PRGAATRLGMKRTTLLSRMQRLGIS 665 AA LG+ ++ L ++++ I+ Sbjct: 433 QVKAAEYLGISKSLLQYKLKKYAIT 457 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 163/409 (39%), Positives = 240/409 (58%), Gaps = 27/409 (6%) Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 AL++ +T A+ + + + E+ +L DR+ V A ++ Sbjct: 77 ALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKL-----DRLRSVVEKALR-------RQG 124 Query: 327 LQQENHQLSEQ--LLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST-VLICGETGTGKEV 383 L+QE ++ E+ G II S M+++ + VAKS ST VLI GE+GTGKE+ Sbjct: 125 LRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKEL 184 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA-INTHRGRFEIADGGT 442 +ARA+H+LS R+ V INCAA+ SLLE+ELFG++KGAFTGA G FEIAD GT Sbjct: 185 VARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGT 244 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEIG++ + LQ KLLR+LQER+ +R+GG + I ++VR+IA+TNR+L + + FR Sbjct: 245 VFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRK 304 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRL V P+ +PPLR+R EDI LL K+F K + I IP + R L+ + WPG Sbjct: 305 DLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEYGWPG 364 Query: 563 NVRELENVIERAVLLTRGNSL------NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT 616 N+REL+NV+ER VL+ G++L N+ + ++S L + D + L + Sbjct: 365 NIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSDGLDARS 424 Query: 617 PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 E+Q I VL+ET+ AA LG+ RTTL ++++ GI+ Sbjct: 425 LAF--MEKQHIENVLKETSWR---RTEAARVLGINRTTLYNKIKEYGIA 468 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 148/343 (43%), Positives = 219/343 (63%), Gaps = 10/343 (2%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 E L+ E L + II S ++D L A++DSTVLI GE+GTGKE++ Sbjct: 212 EYLENE---LKRDRKLDKAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELV 268 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A AIH S R+DKP +++NCAAIP +LLESELFGH++GAFTGA+ G+FE+ADGGT+F Sbjct: 269 ANAIHYASKRKDKPFIRVNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIF 328 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGD+P E+Q KLLRV+QE+E ER+GG +TI V+VR+IAATN+DL + +++ FR DL Sbjct: 329 LDEIGDIPPEIQVKLLRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDL 388 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNV P+ LPPLR+R DIPLL +HF +K+ + +N+ + + +A++ L+ +DWPGN+ Sbjct: 389 YYRLNVIPVILPPLRERRGDIPLLVEHFIEKLNKKLNKNVKKVTKKAMQALIYYDWPGNI 448 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 RELEN+IER + L+ + ++ + R T D + + + +E E Sbjct: 449 RELENIIERCITLSDTDYIDYEDLPQYIRNETTTVSDDDI---IYLGENSELLTMEEYEY 505 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + I ++ A LG+ T+ ++ ++ G+ R Sbjct: 506 KIIKAAIQRYKSF----NKAGKVLGLTHKTIAAKARKFGLVDR 544 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 149/345 (43%), Positives = 209/345 (60%), Gaps = 4/345 (1%) Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 +++L+ L E L D+I QS M + + V+ V+ S +TVLI GE+GTGKE+ Sbjct: 125 RKALKDRTRALEEALTVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKEL 184 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARAIH S R+DKP V +NC+A+ +LLESELFGH KG+FTGA +G FE ADGGT+ Sbjct: 185 VARAIHYRSARKDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTI 244 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIGD+P Q +LLRVLQE E++R+G + + V+VRVIAAT+ DL + E +FR D Sbjct: 245 FLDEIGDVPPATQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFRED 304 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNV ++LPPLRDRPED+PLLA HF + A ++ + I A+ L W GN Sbjct: 305 LFYRLNVITIDLPPLRDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGN 364 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRS-SMAQLLHPTTPENDEE 622 VRELENVIERAV+LT +++ + P + + S + Sbjct: 365 VRELENVIERAVVLTGNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAF 424 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 ER+ + +L + N V+ AA G+ R+ +++ ++ R Sbjct: 425 ERRYLSALLEKNNQNVSSAARAA---GVDRSNFRRLLKQYEVAGR 466 >UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteroidetes RepID=C7PQF7_CHIPD Length = 461 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 153/345 (44%), Positives = 221/345 (64%), Gaps = 13/345 (3%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 E++ + ++ L II +SQ ++ +Q + +VA SD++VLI GE+GTGKE I Sbjct: 126 EAVMRNRDTKEREIQPMLRRYGIIGESQRLQQTMQHLSVVAPSDTSVLITGESGTGKEKI 185 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A IH+LS R KPL+K+NCAA+PA L+ES LFGH+KGAF+GA+ H G+FE A GG++F Sbjct: 186 ADLIHRLSGRASKPLIKVNCAAMPAELIESLLFGHEKGAFSGALERHIGKFEQASGGSIF 245 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG++P+++Q KLLRVLQE+EIER+G + V+VR+I+AT+R+L + V D +FR D Sbjct: 246 LDEIGEMPVDMQVKLLRVLQEKEIERIGAMHSQKVDVRIISATSRNLEKEVADGRFRMDF 305 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNVFPL LPPLR+R EDIP L +F + R++ R + + + L+ + WPGN+ Sbjct: 306 YYRLNVFPLHLPPLRERREDIPALVDYFLEMHCRNIGRPLVTVTRRVMDSLILYSWPGNI 365 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 RELE++IER+VLL G + + +P E+ E ER Sbjct: 366 RELEHLIERSVLLCEGPVITQITLPEKIEYVPVAQEE-------------RVKTMQENER 412 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + I+ VLR G + G GAA L M +TL R+++LGI+ E+ Sbjct: 413 EHIIDVLRRCRGKIFGKGGAAELLSMNVSTLNYRIRKLGINKDEL 457 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 160/475 (33%), Positives = 249/475 (52%), Gaps = 32/475 (6%) Query: 189 SVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF 248 S+++ D KN + L A + + L DL Sbjct: 2 KFSILVLDDEKNIREGL----QMALEDEGYEVFTAEDGNTGVEIALKGDIDLI--ITDLK 55 Query: 249 LWQRDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRI 307 + + L+L + + +I LT A+ H + F + L +R+ Sbjct: 56 MPRMSGELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDL-----NRL 110 Query: 308 AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 ++ V A R L ++ +L +Q+ + +I+ +S AM + V A S Sbjct: 111 SLLVRRALQNRE-------LIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAAS 163 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 ++VLI GE+G GKE+IA AIH LSPR+ KPL+K++CA+ +LESELFGH++GAFTGA Sbjct: 164 KASVLITGESGVGKELIANAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGA 223 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 +N +GRFE+A G++FLDEIG++ + +Q KLLRVLQER ER+GG TI V+VRVI+AT Sbjct: 224 VNRMKGRFELAHEGSMFLDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISAT 283 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 NR+L + ++ FR DL+YRLNV + +P LR+R ED+PLL F +++A + I +I Sbjct: 284 NRNLLEEIKRNLFREDLYYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSI 343 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 +A L ++DWPGN+R+L N IE AV+++ G +++ R L Sbjct: 344 DPQAQSALHAYDWPGNIRQLRNCIESAVIMSSGPVIHIEDLSEPIRSL----------GE 393 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + + P ++ E++ I+Q L G A LG+ R TL ++ + Sbjct: 394 TSSIRIPIGVSMEDAEKEIILQTLEAQKG---NKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 157/400 (39%), Positives = 230/400 (57%), Gaps = 36/400 (9%) Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 + +P+ GAL TLF +N ++ + A + + L+E+ Sbjct: 336 IMRVPIEREGKVVGALA-----KTLF--KNMEIAKMFA-------------KKVMRLEEN 375 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L +L + S DII +S M+ +++ ST+LI GE+GTGKEV + Sbjct: 376 LAYYKEELGKFHSSQFVFDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSH 435 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT-HRGRFEIADGGTLFL 445 AIH+ S R + P +K+NCAA+P LLESELFG+D+GAFTGA G+FE+AD GT+FL Sbjct: 436 AIHKSSIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFL 495 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+ L +Q KLLRVLQERE+ERLGG+ I V+VR+IAATNRDL +MV + +FR DL+ Sbjct: 496 DEIGDMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLY 555 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNV ++LPPLR+R EDI +A+ +K+ + + I + E++ L ++DWPGN+R Sbjct: 556 YRLNVLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESITHLCAYDWPGNIR 615 Query: 566 ELENVIERAVLLTRGN-SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 ELEN++ERA+++ L HL + TL + L ++ ER Sbjct: 616 ELENILERAIVICDEAWILPKHLALPGVMETITLGAEQTLEYAL-----------QAAER 664 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + + + LR G AA LG+ R+ L ++ + I Sbjct: 665 EILDKTLRRVQG---NKVQAARILGIHRSVLYKKLAKYNI 701 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 142/329 (43%), Positives = 205/329 (62%), Gaps = 15/329 (4%) Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 + ++ +II +S M++L Q+ ++A SD+T+L+ GE+GTGKE++A AIH+ S R++ Sbjct: 130 EPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHRHSKRKE 189 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 L++INCAA+ +LLESELFGH+ GAFTGA +G FE AD GTLFLDEIGD+ L Q Sbjct: 190 GALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIGDMSLTTQ 249 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 K+LRVLQE E ER+GG+ +I VNVR+IAA++R+L +++E+ FR DLF+RL+V PL LP Sbjct: 250 VKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVVPLHLP 309 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 LR+R DIP+LA F + + I EAL LM + WPGN+RELEN IER V+ Sbjct: 310 ALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELENSIERGVI 369 Query: 577 LTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 L G + H L P + + ++ + E++ I Q L + Sbjct: 370 LCLGEQITAH------ELPPQFFRNRSPGELSSR------DTLRDVEKRAIQQALARSG- 416 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 A +LG+ R TLL++++ G+ Sbjct: 417 --FNKSATAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 162/381 (42%), Positives = 223/381 (58%), Gaps = 32/381 (8%) Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 +I + + A +R L + N LS+ GI ++ +S AM L Q ++ V Sbjct: 109 SQIDVILKKAQTYRQ-------LLRVNRLLSDDPEDEEGI--LVGRSPAMIRLRQIIERV 159 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 A +D+TVLI GE+GTGKE++AR ++ SPRR + +K+NCAAI +L+ESE FGH++GAF Sbjct: 160 APTDATVLITGESGTGKEMVAREFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAF 219 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA GRFE+A GTL LDE+ ++P LQ KLLRVLQERE ER+GGSRTI VNVR+I Sbjct: 220 TGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRII 279 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 A +NRDL + VE +FR DL+YRLNVFP+ +P LR+RPEDI LLA HF ++ AR + Sbjct: 280 ATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKV 339 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR-------------GNSLNLHLNVRQ 591 A L+ + WPGNVREL+N +ERAV+L+ G+ L L + Sbjct: 340 TGFADSARAALIGYRWPGNVRELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLEP 399 Query: 592 SRLLP-------TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 + + E+ A S H + DE E+Q I LR+T G A Sbjct: 400 APAPEVPALPVAAVAEEPAGASPTVTDSHGQVLKLDELEKQAIRAALRQTGG---NRTQA 456 Query: 645 ATRLGMKRTTLLSRMQRLGIS 665 A LG+ TL +++Q ++ Sbjct: 457 AAELGISIRTLRNKLQEYRLA 477 >UniRef50_C7PDE5 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDE5_CHIPD Length = 651 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 169/539 (31%), Positives = 268/539 (49%), Gaps = 25/539 (4%) Query: 145 RLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFS 204 L K+ V IT + + D + +A + ++ L + Sbjct: 124 SLETKNNQEIHVQKQITEIITENSDNQQKLLKIAEIMQTCVPFDLITSGLRPLNTGQYND 183 Query: 205 LWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD---DLFLWQRDPL------ 255 + + E + +T + + + + ++ DP+ Sbjct: 184 KGYLRVGFDEYQFIGEK---ELLTITNLKRPALSVILANSHLDINTNIYNNDPVNEKPNV 240 Query: 256 ----LLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV 311 L+ + +S L+ P+ N +++ + LL ++ +A Sbjct: 241 PSLQKTLIDTFNIQSYLVFPVVLSNGQSFHYFFYSRQKNIYTNIHISLLDNLRTGLATLA 300 Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 ++ + + +L L+ II + L VA +++V Sbjct: 301 EKMIYGENLAISKNTPVHYERKLQGNTLNYPEFRSIIGNHHLLLGALDLAAQVAFYNTSV 360 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 LI GE+GTGKE +A+AIH LSPR++ P + +NCAAIP +L+ESELFGH+KGAFTGAI Sbjct: 361 LILGESGTGKEKLAQAIHLLSPRKNAPFITVNCAAIPVALIESELFGHEKGAFTGAIEKR 420 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 +G+FE ADGGT+FLDEIG+L E+Q K+LR LQE+EI+ +GG+ VNVRVIAATNR+L Sbjct: 421 KGKFEQADGGTIFLDEIGELSPEMQVKILRFLQEKEIQCIGGNSLTKVNVRVIAATNRNL 480 Query: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 + V FR DL+YR+NVFP+ LP LR+R DI L+ +F +K N+ I T Sbjct: 481 EKEVAAENFRLDLYYRINVFPITLPSLRERRSDIKELSIYFAEKFCSEFNKPFHGIVTSM 540 Query: 552 LRQLMSWDWPGNVRELENVIERAVLLTRG-NSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 + +++++DWPGN+RELENVIE++ +L G + L L + +P ++ + Sbjct: 541 MEEMIAYDWPGNIRELENVIEQSAILNDGKSKLELKRTLTGKATIPV--------TTPIK 592 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 E ER+ I+ VL++ +G V G GAA + +K TTL S+M +L I ++ Sbjct: 593 TFEDVKNIQAETEREYIISVLKQADGRVRGANGAAQLMNIKPTTLESKMAKLKIRREDL 651 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 167/428 (39%), Positives = 234/428 (54%), Gaps = 30/428 (7%) Query: 257 LLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHI-ADRIAIAVGNAD 315 L L +G + ++ L G L F + ++ A A+ A Sbjct: 45 LRLFEDGAPTLVVTDLKMPG--MGGFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAG 102 Query: 316 AWRSMTDL---------------QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 A+ +T + L +EN +L E+L II S ME++ + Sbjct: 103 AYDFITKPFNREALKLTVRKALDMQGLSRENRRLREELSEREEFRSIIGISPPMEEVFRV 162 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 +D VA +D+TVLI GE+GTGKE++ARAIH S RR P V INCAAIP LLESELFGH Sbjct: 163 IDRVADTDATVLITGESGTGKELVARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHV 222 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGA+ G+F A+ GTLFLDE+G+LP+ELQ KLLR LQE+E++ +GG+ TI ++ Sbjct: 223 KGAFTGAVQDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLD 282 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VRV+AATN DL + + + +FR DLFYRL+V P+ LPPLR+R EDIPLL +HF A Sbjct: 283 VRVVAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKH 338 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 A E L + ++ WPGNVRELEN +ER +++ ++++ + R Sbjct: 339 GGASVTFSPEILAVMAAYGWPGNVRELENTVERILIMRNADTIHPDDLPEKVR-----RG 393 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 S R L ++ ER+ +V+ L N AA L + R TL+ RM+ Sbjct: 394 RSPQRECRVINLPDEGYSLEQLEREIVVEALERNNW---NQSSAARFLRIPRHTLIYRME 450 Query: 661 RLGISVRE 668 + I+ E Sbjct: 451 KYSITTPE 458 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 148/450 (32%), Positives = 237/450 (52%), Gaps = 30/450 (6%) Query: 222 MPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCES-ALLIPLTFGNHTPG 280 + G + + D+ + D + L G S ++I +T Sbjct: 30 VTGVGNGQQAVSRIGKEDFDMIFMDMKMPGMDGMEALEKVKGISSETVVILMTAYGTIES 89 Query: 281 ALLLAHTSS-----TLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLS 335 A+ + FS + +LL S + ++ L EN Sbjct: 90 AVEAMRKGAYDYIIKPFSPDQIELL-----------------ISRVNERQKLIAENKYWR 132 Query: 336 EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 + + ++ M + +Q+ +A+S ++VLI GE+GTGKE++ARAIH SPR Sbjct: 133 SASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARAIHYFSPRC 192 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 +KP +++NCAA+ SLLESELFGH++GA+TGA+ GRFE+A+ GTL LDE+ ++ + Sbjct: 193 EKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLDEVSEISPNI 252 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q KLLRVL+E E ER+GG +TI ++VR++A TNRDL + ++ FR DLFYRLNV P+ L Sbjct: 253 QAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHL 312 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLR+R EDIPLLA + +K + N ++ +I A+ L ++WPGNVREL+N+++RAV Sbjct: 313 PPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGNVRELKNIMQRAV 372 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETN 635 ++ L L + + + + + + ++ E++ I L +T Sbjct: 373 VMGSSEELGLENFTSLIDIKKSEHTMC----NDSVNIKKNGQSIEDAEKELIFTTLEKTG 428 Query: 636 GIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 G AA L + TL +++ + I+ Sbjct: 429 G---NKTKAAGLLKITTRTLRNKLNKYVIA 455 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 141/359 (39%), Positives = 215/359 (59%), Gaps = 11/359 (3%) Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V + L ENH L E++ + + + I+ S ++D+L+ V + + + Sbjct: 111 VEELKIILQRMAEKVRLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTP 170 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLICGE+GTGKE++ARA+H +P V ++C ++ +L+ESELFGH+KGAFTGAI Sbjct: 171 VLICGESGTGKELVARAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKP 230 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G F+ A+GGT+FLDEIG+LPL+LQ KLLRVLQ++++ +G ++++ V+VRVIAATNRD Sbjct: 231 KEGLFQAANGGTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRD 290 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + FR DL++RLNV + LP LR+R DIP L +HF + + R + ++ Sbjct: 291 LEAGYKTGTFRKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQ 348 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A++ LM +DWPGNVRELEN IERAV L G +++ L P+L + +++ A Sbjct: 349 AMKSLMQYDWPGNVRELENCIERAVALGNGEVIDVD------DLPPSLQAMAPKKNAPAV 402 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + + ++ ER I +V + G A LG+ R TL +++R I + Sbjct: 403 SEGYDSTDLEDIERTTIQRVFDQVGG---DKGLALKMLGISRATLYRKIKRYNIDISRT 458 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 150/375 (40%), Positives = 216/375 (57%), Gaps = 20/375 (5%) Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG-DIIYQSQAMEDLLQQVDIVAKSDS 369 + DA + + L ++L + + +II S AM+ + + + VA SD Sbjct: 108 LDVIDAIVEKVGRAREIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDI 167 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 T+LI GE+GTGKE++ARAIH S R KP V INCAAIP LLESELFG ++GAFTGA Sbjct: 168 TILIQGESGTGKEMVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASE 227 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 +G+FE A+ GT+FLDEIGD+PL+LQ K+LRVLQE E+ R+GG+++I VNVR++AATN+ Sbjct: 228 RKQGKFEQANQGTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQ 287 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 +L + V R+FR DL+YRLNV P+ L PLR+R +DIP L ++F + ++ + Sbjct: 288 ELQERVRQREFREDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTP 347 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRS 606 EA+ L WPGNVRELEN I+RAV+L+ L + + +D++L + Sbjct: 348 EAMALLSRHSWPGNVRELENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEA 407 Query: 607 SMAQLLHPTTPEND-------------EEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 + L + + ER I +L +T AA LG+ R Sbjct: 408 IVEAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRW---NQVKAADILGINRN 464 Query: 654 TLLSRMQRLGISVRE 668 TL ++ L I ++ Sbjct: 465 TLRKKIHDLEIELKR 479 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 144/355 (40%), Positives = 214/355 (60%), Gaps = 13/355 (3%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 ++L+QEN L ++L ++ +++ M +L++V +VA +D+TVLI GE+GTGKEVI Sbjct: 121 QALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVI 180 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A AIH+ SPR + L+K++CAA+P +LLE+ELFGH++GAFTGA+ GRFE+A GTLF Sbjct: 181 ANAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLF 240 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG++ +Q KLLRVLQE+ ER+GG+ TI +VR++ AT ++L + VE +FR DL Sbjct: 241 LDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDL 300 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 FYRLNV + LPPLR+R EDI +LA+H Q+ + R + A L+ + +PGNV Sbjct: 301 FYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGNV 360 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN----------EDSALRSSMAQLLHP 614 RELEN IERAV L + ++ + P L ++ + A+ Sbjct: 361 RELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGT 420 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + ER+ I+ VL A+ LG+ R L + +R G++ + Sbjct: 421 LAEVRERCEREYILAVLEREGW---SRTAASKSLGLSRKALWEKCKRYGLATPDT 472 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 156/337 (46%), Positives = 227/337 (67%), Gaps = 16/337 (4%) Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 +QEN + E+ II +SQ M+DL +++D+V+KS+S++LI GE+GTGKE++A+A Sbjct: 119 KQENFDVEEE------FEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKA 172 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH+ S R ++P + INC+AIP L E+ELFGH+KG+FTGA N G+ E+A GTLFLDE Sbjct: 173 IHRRSKRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDE 232 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IG++PL +Q KLLRVLQERE R+GG I + RVI+ATNR+L +MVE+++FR DLFYR Sbjct: 233 IGEMPLFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYR 292 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 +NV L++PPLR+R EDIPLL K F K ++ N+ + I +AL LM++DWPGNVR+L Sbjct: 293 INVIHLKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQL 352 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 EN+IERAV+L +G + + LP + ++ + S + + E+ I Sbjct: 353 ENIIERAVVLCQGEIIT-------ANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNII 405 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ++VL+E N AA +LG+ R L ++M+ G+ Sbjct: 406 LKVLQEEN---FNQTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis Family n=8 Tax=Desulfovibrio RepID=B8DQY9_DESVM Length = 579 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 163/453 (35%), Positives = 242/453 (53%), Gaps = 13/453 (2%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSA 212 + L I+ LDL+ + +V R + + ++ L D + L+ Sbjct: 9 KLKALYAISQVFDRALDLEQALGEVLRVLSETLSMKRATITLPDRETGQLVIAASHGLTP 68 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTH--RADDLFLWQRDPLLLLLASNGCESALLI 270 + + QT +P + R D LFL D G S L + Sbjct: 69 EERGR--GVYRLDEGVTGTIFQTARPYIVRDVRTDPLFL---DRTGARKVEKGKISFLGV 123 Query: 271 PLTFGNHTPGALLLAH-TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 P+ G L + S + + E+ + L +A +A + + + ++L++ Sbjct: 124 PILKQGAPIGVLNVDRLFSDDVSTSEDVEFLGIVATLVAQFLS---LNEQLNERVDTLRR 180 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 EN +L ++L G I+ +S AM D+ +Q++ VA + +TVL+ GE+G GK +IAR +H Sbjct: 181 ENVKLRTRVLDERG-DYIVGRSAAMLDVQRQIERVAPTRATVLLLGESGVGKTLIARLLH 239 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 LS R P VK+NCA+IP +LLE+ELFGH+KGAFTGA GRFE A GT+FLDEIG Sbjct: 240 NLSDRMVHPFVKVNCASIPETLLEAELFGHEKGAFTGAAAVRAGRFEEAHRGTIFLDEIG 299 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +LP +Q KLLRV+Q+RE ERLG ++T V+VR++AATNRDL + E +FR DL+YRL Sbjct: 300 ELPPGIQAKLLRVIQDREFERLGSNQTHRVDVRIVAATNRDLALLSEQGRFRQDLYYRLC 359 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VFP+ +P LR+RP+D+ L HF K AR R + + +AL L +WPGNVRE+EN Sbjct: 360 VFPIRVPSLRERPDDVERLLNHFLAKAARDY-RRVITLAPDALGLLRRHEWPGNVREMEN 418 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 +IER +L+ ++ T N Sbjct: 419 LIERLAILSESGQIDRRFLEPLLEHSATENAQP 451 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + ER I+ LR + AA LG+ + R++++G+S Sbjct: 523 TLRDIERNEIIAALRRNGWV---QHRAAAALGITPRQMGYRIRKMGLS 567 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 259/481 (53%), Gaps = 24/481 (4%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 + + S+++ D K ++ + L H + + + Q + T QP L D Sbjct: 7 MHTNSILIVDDEKAARYGMKKI-LQRDHGSIFEAT---NGIDVLQKIHTLQPALIF--LD 60 Query: 247 LFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGA--LLLAHTSSTLFSEENCQLLQHIA 304 + + Q D L L PL G+ + + + +IA Sbjct: 61 INMPQLDGLKTL---EKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYD--------YIA 109 Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 + ++ + +LQ+EN +L ++ G G+++ QS+ M+++ +++ V Sbjct: 110 KPYEMEELRIITRNALEKI--ALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKV 167 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 +D TVL+ GE+G+GKE+ A IH+ S R++ P + +NCAA+P +L+ESELFGH++G+F Sbjct: 168 VTADVTVLLQGESGSGKELAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSF 227 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA G+FE+A+ GT+ LDEIGD+ L Q KLLRVLQE++ ERLGG+ T+ V+VR+I Sbjct: 228 TGATERRMGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRII 287 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 +AT+RDL + +E+ +FR DL+YR+NV +++PPLR R EDIPLL F Q ++ + + Sbjct: 288 SATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNV 347 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL 604 +I +A+++L +++WPGN+R+L+N IE A++LT + L++ + + Sbjct: 348 VSISNDAMKKLSAYNWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKN 407 Query: 605 RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + E+ I + L E G ++ A L M R L +++ L + Sbjct: 408 VHYHLSFREAKKILIENFEKDFISKKLEECGGNIS---HTAEALDMHRQNLQQKIKDLQL 464 Query: 665 S 665 + Sbjct: 465 N 465 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 151/340 (44%), Positives = 200/340 (58%), Gaps = 3/340 (0%) Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 ++ +N L E + S +I Q A++ L + V ++A SDSTVLI GE+G GKEV+ Sbjct: 123 RQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVL 182 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A+A+H+ R KPLV INC AIP LLESELFGH KGAFTGA+ GRFEIA+GGT+F Sbjct: 183 AKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIF 242 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGD+ +LQ KLLRVLQER E +G ++I V+VRVIAAT+RDL + +FR DL Sbjct: 243 LDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDL 302 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 +YRLNV PL LPPLR+R +DI LL HF + + I + E R ++++ WPGNV Sbjct: 303 YYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNV 362 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 REL+N+IER L R + L + S DE E Sbjct: 363 RELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFES 422 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 I+ L+ AA L M RTTL+ ++++ G+ Sbjct: 423 HLILSALQRFQW---NKNQAANFLAMNRTTLVEKIKKKGL 459 >UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 Length = 1673 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 181/539 (33%), Positives = 270/539 (50%), Gaps = 48/539 (8%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 L+++ + S LD ++++ G ++L L + Sbjct: 1156 LLEVNRRLSSTLDAEEVLRLAMDAAIELTGAERGFVILASPSPEPG-GHAKGRLEVAVAR 1214 Query: 217 CLPRCMPGESVL------LTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 L R G+S L + ++ + LT A + + + L S + + Sbjct: 1215 NLDRERVGKSQLKFSHGIAKRVVERGEAVLTVDALADERFHGNASVHGLR---LRSIVCV 1271 Query: 271 PLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 P+ GA+ L + F+E + LL AD+IA+A+ N + D +L++ Sbjct: 1272 PIRAHGAVLGAVYLDNRFQRGKFAEGDADLLGAFADQIAVALHNGRLMAELRDRTRALEE 1331 Query: 330 ENHQLSEQLLS-------------------NLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 E +++E + S +I +S M +L + VA+SD T Sbjct: 1332 EQRRVAELMRSQADEIERLSHELERTRADARRDFPEIAGRSAPMRAVLALCERVAESDVT 1391 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 V + GE+GTGKE++ARAIH PRRD P V +NCAA+P +LLESELFGH KGAFTGA+ Sbjct: 1392 VTVTGESGTGKELVARAIHAGGPRRDGPFVAVNCAALPEALLESELFGHVKGAFTGAVRD 1451 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPV-NVRVIAATNR 489 H G F A GGTLFLDE+G++PL +Q KLLR LQER I +G R++ V +VRV+ ATNR Sbjct: 1452 HGGLFLSARGGTLFLDELGEVPLGVQAKLLRALQERSIRPVGSDRSVSVADVRVVCATNR 1511 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL V +FR DL+YR++V + LPPLRDRPEDIP +A+ +K+A R + Sbjct: 1512 DLRDEVARGRFREDLYYRVSVIEIRLPPLRDRPEDIPAIAQAIVEKLAARQGRPAFRLSR 1571 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 ALR+L S+ WPGNVR+LENV+ RA +L+ G + D L ++ Sbjct: 1572 GALRRLSSYGWPGNVRQLENVLSRACVLSPGPEIG--------------AADIQLPAAAP 1617 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + E+ E +RI L + V+ + LG+ R TL ++ R G+ +E Sbjct: 1618 APRGRSRAEHQGAEEERIRAALDLSRWNVS---EVSRSLGIPRMTLYRKLARYGLLRKE 1673 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 138/331 (41%), Positives = 204/331 (61%), Gaps = 16/331 (4%) Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L L +I S M+ + ++ +A+ STVLI GE+GTGKE++A A+H P Sbjct: 254 LERSLNKRQSFHRMIATSSKMQQVFGLIETLAQVPSTVLILGESGTGKELVAEALHLSGP 313 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 R+++PLVK+NCAA+ +LLESELFGH KG+FTGA+ H GRF+ ADGGT+FLDEIGD+ Sbjct: 314 RKNRPLVKVNCAALSDTLLESELFGHVKGSFTGAVKDHVGRFQKADGGTIFLDEIGDISP 373 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 +Q +LLRVLQE+E+ER+G S + V+VR++AATN+DL + V +FR DL+YRL V L Sbjct: 374 RMQLRLLRVLQEKEVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFRQDLYYRLKVITL 433 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 LPPLR+R EDIP + HF Q+ + R + + E +R + ++DWPGNVR+LE+ IE Sbjct: 434 ALPPLRERKEDIPPMVDHFIQRYNEVLGRNLQGVDQEVMRAMQAYDWPGNVRQLEHAIEH 493 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 ++ L +L Q + +++E+E+Q+I+ L + Sbjct: 494 ILIHCTEP-------------LASLAHVPEEILQGEQAVGKYCADSEEQEQQQILAALDK 540 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 T+ AA LG+ R TL ++++ G+ Sbjct: 541 TDW---NKAKAARLLGIDRKTLYRKIEKFGL 568 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 145/368 (39%), Positives = 210/368 (57%), Gaps = 11/368 (2%) Query: 305 DRIAIAVGNADAWRSMTDLQESL---QQENHQLSEQLLSNLGIGD----IIYQSQAMEDL 357 D I AV + + L E L E H+L +++ D + +S ++ Sbjct: 188 DEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDTSDPFLAMNGKSPVIQRT 247 Query: 358 LQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELF 417 +Q V STVLI GE+G GKEV A+AIH+ S + P + INC AIP +L ESELF Sbjct: 248 IQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASETANAPFISINCGAIPEALFESELF 307 Query: 418 GHDKGAFTGAI-NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 G+++GAF+GA +G+ E+A GGTLFLDEIG++PL++Q KLLRVLQER+ R+GG + Sbjct: 308 GYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKE 367 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 I ++ R+IAATNRDL + + FR DL+YRLNV L +PPLR+R EDI L F Sbjct: 368 INIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYTFLNDF 427 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP 596 + + NR I +P+ + +L+ ++WPGN+REL NV+ER V+ + + Sbjct: 428 SINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTNDTL 487 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 +L S + E DE E++ I + LR +G A +LG+ R TL Sbjct: 488 ENETSHSLLLSNNNTILSLQEEMDEHEKKIIERALRILDG---NKLECAKQLGVTRATLY 544 Query: 657 SRMQRLGI 664 +R++RLG+ Sbjct: 545 NRLKRLGL 552 >UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphaproteobacteria RepID=NIFA_RHIEC Length = 584 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 163/559 (29%), Positives = 281/559 (50%), Gaps = 53/559 (9%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 + +I+ + + L+ +A+V + F + ++V+ D + D+ S + Sbjct: 33 IYEISKVLTAPARLEITLANVVNVLSSFLQIRCGAIVVLDAE-GQPEIAATGDIPPSSQS 91 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN 276 +P ++ T P + L+Q +P + S + +P+ N Sbjct: 92 AARGVIPKA--VIDHIATTGMPLIVKDVSKSELFQAEPQPPWSSGTVPISFIGVPVKADN 149 Query: 277 HTPGALLLAHTSSTL---FSEENCQLLQHIADRIA--IAVGNADAWRSMTDLQESLQQEN 331 G + + + ++E+ + L +A+ ++ I + + E + E Sbjct: 150 KILGTISIDRVRNDAAPFPADEDVRFLTMVANLVSRTIRLHRFLNLEGRRPIGEQERPEK 209 Query: 332 HQLSEQ----LLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 ++++ + I II S A++ +++ V +VA+++STVL+ GE+GTGKE A+A Sbjct: 210 PIIAQRGAPGRHPPVKIDGIIGDSPALQQVVETVSVVARTNSTVLLRGESGTGKEFFAQA 269 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH+LSPR++KP VK+NCAA+P +LESELFGH+KGAFTGAI GRFE+A+GGTL LDE Sbjct: 270 IHELSPRKNKPFVKLNCAALPEGVLESELFGHEKGAFTGAIAQRAGRFELANGGTLLLDE 329 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IG++ Q KLLRVLQE E+ER+GG++T+ V+VR+I ATN++L V + +FR+DL+YR Sbjct: 330 IGEISPAFQAKLLRVLQEGELERVGGTKTLAVDVRLICATNKNLEMAVANAEFRADLYYR 389 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 ++V P+ LPPLR+RP DIP LA + + R + + A+ + +PGNVREL Sbjct: 390 ISVVPIVLPPLRERPGDIPRLANALLDRFNKENQREL-TFSSSAIEVMSQCYFPGNVREL 448 Query: 568 ENVIERAVLLTRGNSLNLHL-------------------------------------NVR 590 EN + R L R +S+ + R Sbjct: 449 ENCVRRTATLARSSSIVSSDFACKNSQCLSSLLWKTDGSPGGITVDGHARSNVMPTSSPR 508 Query: 591 QSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGM 650 + +E S++++ E+ +R R+++ + + + A AA LG+ Sbjct: 509 SGGSIGASDEVSSVKACDPHGSGCPAMESRLTQRDRLIEAMEKAGWVQA---KAARILGL 565 Query: 651 KRTTLLSRMQRLGISVREV 669 + +++ I V+++ Sbjct: 566 TPRQVGYALRQHRIEVKKL 584 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 139/331 (41%), Positives = 201/331 (60%), Gaps = 4/331 (1%) Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L L + +I +S M + + V+ +A +D+TVL+ GE+GTGKE++A A+H Sbjct: 263 LERALAAQHIRRSMIGRSSVMRGVFRLVESLADTDTTVLVTGESGTGKELVADALHHSGA 322 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 R P VK+NC+A+ +LLESELFGH +GAFTGA GR ++A GGTLFLDEIGD+ Sbjct: 323 RAQGPFVKVNCSALSETLLESELFGHVRGAFTGATKDRTGRIQMAHGGTLFLDEIGDISP 382 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 +Q KLLRVLQE+EIER+G R + V+VRV+AATN+ L +V +FR DL+YRL V + Sbjct: 383 SVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATNKSLRALVARGKFREDLYYRLKVVEV 442 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 LP LR+R EDIPLLA+HF ++ H +R + + + A + L+ +DWPGNVREL + +E Sbjct: 443 HLPALRERREDIPLLAEHFIEEFNEHFHRRVSGLDSSAQQLLVQYDWPGNVRELRHAVEH 502 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 A ++ GN + + + SA ++ + E +QR+ L+E Sbjct: 503 AFIMAGGNVIPAAALPAELMQSGRFSAQSAGTGALRHDAPDAAAQGAEW-KQRLSAALKE 561 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 T G AA LG+ R T+ R++ LG+ Sbjct: 562 TGG---NKAKAARLLGISRQTMYRRLRELGM 589 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 149/360 (41%), Positives = 221/360 (61%), Gaps = 12/360 (3%) Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 +G + MT+LQ++ + + + + L + +G+I+ +S+ M+++ +V A S ST Sbjct: 117 IGIVETVTDMTELQKA-RHKAEEATRLLGQHYSLGNIMGKSEVMQEVFSRVRAAAASRST 175 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IARAIH S + D+P V +NC+A+ +LLESELFGH KGAFTGA+ Sbjct: 176 VLIQGESGTGKELIARAIHYNSDQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRD 235 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE A G++FLDEIG+L +Q KLLRVLQERE+ER+G S+T +++RVI AT+RD Sbjct: 236 RAGRFEEAHRGSIFLDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRD 295 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L +++ FR DL+YRL VFP+ LPPLR R ED+PLL HF K + + + E Sbjct: 296 LNELLAQGVFRQDLYYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPE 355 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSS 607 A+R + + WPGNVRELEN IE A +LT G + +L + R P ++ + + Sbjct: 356 AMRLVFEYHWPGNVRELENAIEHAFVLTSGEQIQVNDLPAEIITPRPSPERAREAGVPRT 415 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 H P+ R++++ +L A +LG+ RT + M++ GI ++ Sbjct: 416 AGSRQHHEQPD-----REQLLALLEANQW---NKAAVARQLGVSRTAVWKYMKKWGIPLQ 467 >UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XJ05_DESMR Length = 447 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 161/390 (41%), Positives = 232/390 (59%), Gaps = 18/390 (4%) Query: 280 GALLLAHTSSTLFSEENCQLLQHIADRI-AIAVGNADAWRSMTDLQ--ESLQQENHQLSE 336 GA+ LA T L+ + H +I +A A A RS +L E + + +L Sbjct: 65 GAVYLAATGLLLWVRRPIRRFLHSTRQIDVLAQTPAPAARSRDELDRLEGVFDQVVELLS 124 Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 + + +++ +S+AM + Q+ VA +D+TVL+ GE+G GKE+ A ++H+ S R Sbjct: 125 AMDARALFPNMVGESRAMRAVFSQLLKVAATDATVLLLGESGVGKELAALSLHEKSGRAK 184 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 P V +NCAAIP LLESELFGH++GAFTGA+ G+FE A GTLFLDEIGD+P E Q Sbjct: 185 GPFVAVNCAAIPEGLLESELFGHERGAFTGAVARKIGKFEKAAQGTLFLDEIGDMPPETQ 244 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 K+LR ++ R+ ER+GG + + ++VRV+AAT+RDL +M+ +FR DL++RLNVFP+ LP Sbjct: 245 AKILRAIESRQFERVGGGKPLRLDVRVVAATHRDLPEMIRQGRFREDLYHRLNVFPVRLP 304 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 PLRDR EDIPLLA F + R + EAL++L++ DWPGNVREL+NV+ERA + Sbjct: 305 PLRDRREDIPLLAGRFLEGF-----RPGARLSVEALQRLLAHDWPGNVRELKNVLERATV 359 Query: 577 LTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 L G+ + R LP L+ ++ ER I L T G Sbjct: 360 LAGGDEI-------APRHLPGLSGQGPAEATAGDEAADLDSRLAAYERTLIEAALSRTGG 412 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 + + AA LG+K +L R+++LGI+V Sbjct: 413 VQS---RAAALLGIKERSLWHRVKKLGIAV 439 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 142/361 (39%), Positives = 213/361 (59%), Gaps = 8/361 (2%) Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 D + I V A + +T L QE ++ ++ + G I+ +S ++++ + + V Sbjct: 120 DEVKIIVSRAIRMQQLTKEVVYLTQEVQEMG---MTAMTPGKIVGESSKIQEVYKIIGRV 176 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 A S +TVL+ GE+GTGK ++A+AIH S RR+KP +++NC +IP LLESE+FGH+KGAF Sbjct: 177 ANSKATVLLTGESGTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAF 236 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 T A G+FE+A+GGTLFLDEI ++ LQ KLLRVLQE+E ER+GG++T NVR+I Sbjct: 237 TSAFFQKPGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRII 296 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 AATNRDL + + ++ FR DL+YRLNV + LPPL +R EDI LLA +F ++ + + R Sbjct: 297 AATNRDLNKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNG 356 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL 604 E L ++ WPGN+RELEN +E A++++ + L N+ S + + D + Sbjct: 357 MFFAPEVLDIFRNYSWPGNIRELENAVEHAIIMSNTRVI-LPENLPLSIKVEDVEADGTI 415 Query: 605 RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 P E E++ I + + T G AA L + R LL ++ I Sbjct: 416 ILG-DDSFKPLREVLLEVEKRHISEAIERTGG---NRTQAAKLLQISRRALLYKINENNI 471 Query: 665 S 665 Sbjct: 472 D 472 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 148/350 (42%), Positives = 208/350 (59%), Gaps = 15/350 (4%) Query: 318 RSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 +++ Q ++ E Q + + + ++I +S M L + V VA STVLI GE+ Sbjct: 256 KTVYSSQRRIKGEPEQWA---SARYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGES 312 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH-RGRFE 436 GTGKE++A ++H S R P VK+NCAA+P +LLESELFG+ +GAFTGA G+FE Sbjct: 313 GTGKELLAHSLHVGSNRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFE 372 Query: 437 IADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVE 496 A+GGT+FLDEIGD+PL +Q KLLRVLQE+EIERLG +R V VRV+AATNR L QM+ Sbjct: 373 QANGGTIFLDEIGDMPLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIA 432 Query: 497 DRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLM 556 D FR DL+YRLNV L++P LR+R +D+ L ++F K I + +AL Sbjct: 433 DNTFREDLYYRLNVVTLQIPSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALELFE 492 Query: 557 SWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT 616 +++WPGNVRELENV+ERA L G+ +++ L P L + + P+ Sbjct: 493 NYNWPGNVRELENVVERAFNLVDGHIIDV------MHLPPYLQKFGKSKRHSINKSLPSL 546 Query: 617 PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 ++ E++ I L TNG AA LG+ R L ++ + GI Sbjct: 547 --LEQVEKEAIADALSVTNG---NKMQAAKILGISRAWLYKKIAQYGIKA 591 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 208/338 (61%), Gaps = 17/338 (5%) Query: 330 ENHQLSEQLLSNLGI--GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 E L ++L + DII +S M+ +L+ +A D+TVLI GE+GTGKE+IA Sbjct: 119 EVSDLKKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANF 178 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH+ S R+++P + INC AIP+ LLESELFG+ KGAFTGA +G E A+GGTLFLDE Sbjct: 179 IHKNSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDE 238 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IG+LPL+LQ KLLRVLQE EI+ +G +R ++VR IAATNRDL +MVE+ +FR DL+YR Sbjct: 239 IGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYR 298 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 +NV P+ +PPLR+R EDI LA++F K + +A +L+++D+ GNVREL Sbjct: 299 INVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVREL 358 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 EN+IERAVL T G + + + R ++Q L P E E + Sbjct: 359 ENIIERAVLTTEGEEIT------------DIPVTVSKRYILSQELKPFKEAKKEFEESYL 406 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 +L +T+ ++ A+ G+ R + ++R GI Sbjct: 407 KNLLEKTDFNIS---KASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 156/396 (39%), Positives = 215/396 (54%), Gaps = 29/396 (7%) Query: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 P+ G GA+ + + +A A A+ R + Q+E Sbjct: 229 PIIKGGKVVGAVG-----------------KAVFPHLAEAQELAEKVRCLEHKVTFFQEE 271 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 L + + + D++ +S M+ L ++ IVA S STVLI GE+GTGKE +A AIH Sbjct: 272 ---LQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHL 328 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN-THRGRFEIADGGTLFLDEIG 449 S R P +K+NCA+IP SL+ESE+FG+ GAFTGA GR E ADGGTLFLDEIG Sbjct: 329 GSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIG 388 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 ++PL LQ KLLRVLQ+REIERLG + TI VN+R++AATN+ L + +FR DL+YRLN Sbjct: 389 EMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLN 448 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 V L LPPLR+R EDI L F K + + I A+ L+ + WPGN+RELEN Sbjct: 449 VINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIRELEN 508 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 V+ERAV TR + L Q ++ ++AL M + + ER I Sbjct: 509 VVERAVNYTRSGLIELIHLPHQI-----ISGNTALGQVMNKKTIRHQDRLGQIERDMIAA 563 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 L + G AA L + R+ L ++ + ++ Sbjct: 564 ALEKAGG---NKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGY0_PLALI Length = 675 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 174/549 (31%), Positives = 271/549 (49%), Gaps = 26/549 (4%) Query: 131 LQSWLNDEEQQVALRLLEKDRD-HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLAS 189 + + E +L + R R VD + L+L L +A E+ Sbjct: 127 VDALRERHESDSNPEILHRRRQSRFRQPVDAAARDKTSLELSRLYR-LALEMGSATTAQG 185 Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPT--LTHRADDL 247 +S ++ + N + + L S + ++ Q QP ++ + Sbjct: 186 LSEIVLEGLLNASSATIGAILLMSSSLAKNSGGNDQLSVVAYRAQNHQPYHPVSDSLSQI 245 Query: 248 FLWQRDPLLLLLASN-------------GCESALLIPLTFGNHTPGALLLAHTSSTLFSE 294 L ++ +L S+ +S + P+ G + L T + E Sbjct: 246 VLKDQEAVLARDISSDDRFLDRDSLGEIEAQSVICAPVRTAEKVYGLIHLYSTDNVSQLE 305 Query: 295 -ENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 ++ + +AD++A + + + + EN L EQL S + D+I +S A Sbjct: 306 VDDLEFTLAVADQMAAGLEQLQRVEKLQAGLQRAEVENQTLREQLRSEM---DLIGESPA 362 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 M+ L ++ +A +D+T LI GE+G+GKE+IARAIH S RR P + +NCAA+ SLLE Sbjct: 363 MQQLKNRIARIAPTDATALIRGESGSGKELIARAIHLHSNRRGGPFITMNCAALSESLLE 422 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 SELFGH+KG+FTGA+ G+FE A GT+FLDE+G++ +Q K LRVL+ ER+GG Sbjct: 423 SELFGHEKGSFTGAVGRKLGKFEQAHQGTIFLDEVGEMSPGVQAKFLRVLEGHPFERVGG 482 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 + +VRV+AATNRDL + V + FR DL++RL V L + PLR R DIPLLA +F Sbjct: 483 GDPVHADVRVVAATNRDLEKAVSEGTFRQDLYFRLQVVELVVEPLRRRKLDIPLLANYFL 542 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 + AR M R + A++ L+ +DWPGNVREL++ IERAV+L ++ ++ S Sbjct: 543 NRFARKMARNMVGFTPGAMQALIEYDWPGNVRELQHTIERAVILCPHEAVG-QADLHLSA 601 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 L T R + P + E+Q I+ L T AA LG++R+ Sbjct: 602 LGTTGKSVEPTRDISTRQTFEALP-LEIVEQQHILATLEWTGW---NKSQAAQILGIERS 657 Query: 654 TLLSRMQRL 662 TL +++R Sbjct: 658 TLDRKLKRY 666 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 168/473 (35%), Positives = 261/473 (55%), Gaps = 30/473 (6%) Query: 204 SLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF--------LWQRDPL 255 S+ D S C L + E + QT+Q+ + + +DL L D + Sbjct: 4 SILIVDDEESICKSLGDILVDEGYEV-QTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDGM 62 Query: 256 LLLLASNGCESALLIPLTFGNHTPG-ALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNA 314 +L L + + G+ T A+ + F E+ L ++I + + +A Sbjct: 63 EVLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSL-----EKIILTLKHA 117 Query: 315 DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 L++EN L +++ + ++ +S + +L++ + IVA +++ +LI Sbjct: 118 LDLS-------RLEEENVLLKQKINRDY---ELTGKSPPIIELMEMISIVAPTNAWILIM 167 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GE GTGKE++ARAIH+ S R DKP+V++NCAAIP L+ESELFGH+KGAFTGA RG+ Sbjct: 168 GENGTGKELVARAIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGK 227 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 F+IA GT+FLDE+ D+ L+ Q K+LR+LQE++ ER+GG++ I ++VRV+AATN+DL + Sbjct: 228 FDIAHEGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKE 287 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 +E+ +FR DLFYRLNV PL++PPLR R EDIPLLA+ F A I +AL Sbjct: 288 MEEGRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALAL 347 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 LM WPGNVREL+N IER ++T N + +H R + L Sbjct: 348 LMEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPPLPRD--GHKVEPFREPGFELLAGS 405 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + E+Q I + LRE +G ++ A +G++R+ L +++ G+ + Sbjct: 406 FREAKMDFEKQYISRKLREFDGNIS---KTAESIGLERSNLHKKIKAYGLESK 455 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 164/483 (33%), Positives = 248/483 (51%), Gaps = 27/483 (5%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 ++ + + D + + L S + G +LL + Q L D Sbjct: 6 MSETRIFICDDEEGIL--KYMKKLLESQGLVVETFTSG-KMLLARLQQGPNADLL--LQD 60 Query: 247 LFLWQRDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 + + D L +L L ++ +T A+ + + + + Sbjct: 61 VKMPDMDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFP-----KE 115 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 +I + N +E L++EN QL E+L I++ S ++ + VA Sbjct: 116 KILGVLENVLE-------RELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVA 168 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 S++ +LI GE+GTGKE+IA AIH+ S RR + ++ INCAA+ +LLES+LFGH +GAFT Sbjct: 169 ASEANILILGESGTGKELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFT 228 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA +G E AD GTLF+DEIGD+ L LQ KLLRV+QE + +G +R V++R +A Sbjct: 229 GATTNQKGLLEEADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVA 288 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATN++L + V + +FR DL+YRLNV + LPPLR+R EDI LA+HF +K + MN+ +D Sbjct: 289 ATNKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVD 348 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLNEDSAL 604 EAL ++ + WPGN+RELENV+ERAV+L R + HL + + + T A Sbjct: 349 RFTREALDLMLGYSWPGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPAS 408 Query: 605 RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 S QL+ + ER+ I Q L T A LG+ R TL ++ G+ Sbjct: 409 ALSSHQLV-----SLENVEREHIRQTLARTG---FHKSRTAEILGISRKTLDRKIAEFGL 460 Query: 665 SVR 667 Sbjct: 461 KPE 463 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 891 0.0 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 699 0.0 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 692 0.0 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 676 0.0 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 658 0.0 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 641 0.0 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 628 e-178 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 626 e-177 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 621 e-176 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 614 e-174 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 611 e-173 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 611 e-173 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 609 e-172 UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis F... 609 e-172 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 606 e-171 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 604 e-171 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 603 e-171 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 603 e-171 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 603 e-171 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 603 e-171 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 599 e-169 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 592 e-167 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 592 e-167 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 591 e-167 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 590 e-167 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 589 e-166 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 589 e-166 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 588 e-166 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 588 e-166 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 588 e-166 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 587 e-166 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 586 e-166 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 586 e-165 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 583 e-165 UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regula... 582 e-164 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 582 e-164 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 581 e-164 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 581 e-164 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 581 e-164 UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator... 580 e-164 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 578 e-163 UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis F... 578 e-163 UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing pr... 578 e-163 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 576 e-163 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 576 e-162 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 575 e-162 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 575 e-162 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 575 e-162 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 570 e-161 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 569 e-161 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 569 e-160 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 569 e-160 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 568 e-160 UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis ... 568 e-160 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 566 e-159 UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax... 566 e-159 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 565 e-159 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 562 e-158 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 562 e-158 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 562 e-158 UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulato... 562 e-158 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 562 e-158 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 561 e-158 UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobi... 557 e-157 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 557 e-157 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 556 e-156 UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis F... 556 e-156 UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desu... 555 e-156 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 553 e-156 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis ... 552 e-155 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 552 e-155 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 552 e-155 UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 ... 551 e-155 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 550 e-155 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 550 e-155 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 550 e-155 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 549 e-154 UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with ... 549 e-154 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 549 e-154 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 549 e-154 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 549 e-154 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 548 e-154 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 548 e-154 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 547 e-154 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 547 e-154 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 547 e-154 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 546 e-154 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 546 e-153 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 546 e-153 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 546 e-153 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 545 e-153 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 545 e-153 UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis ... 545 e-153 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 544 e-153 UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobi... 544 e-153 UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis f... 544 e-153 UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis F... 544 e-153 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 544 e-153 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 544 e-153 UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator,... 543 e-153 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 543 e-153 UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis F... 543 e-153 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 543 e-152 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 542 e-152 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 542 e-152 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 542 e-152 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 542 e-152 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 540 e-152 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 539 e-151 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 539 e-151 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 539 e-151 UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis ... 538 e-151 UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis F... 538 e-151 UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with ... 538 e-151 UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis F... 538 e-151 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 538 e-151 UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Prote... 537 e-151 UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis F... 537 e-151 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 537 e-151 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 537 e-151 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 536 e-151 UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pire... 536 e-151 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 536 e-151 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 536 e-150 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 536 e-150 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 536 e-150 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 535 e-150 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 535 e-150 UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis F... 535 e-150 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 535 e-150 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 535 e-150 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 534 e-150 UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-bind... 534 e-150 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 534 e-150 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 534 e-150 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 533 e-150 UniRef50_Q7UK84 Probable two-component response regulator n=1 Ta... 533 e-150 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 532 e-149 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 532 e-149 UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional... 532 e-149 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 532 e-149 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 532 e-149 UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spir... 532 e-149 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 531 e-149 UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 ... 531 e-149 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 531 e-149 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 530 e-149 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 530 e-149 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 530 e-149 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 530 e-149 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 530 e-149 UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Ga... 530 e-149 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 529 e-148 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 529 e-148 UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphapro... 529 e-148 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 529 e-148 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 529 e-148 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 528 e-148 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 528 e-148 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 528 e-148 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 527 e-148 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 527 e-148 UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desul... 527 e-148 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 527 e-148 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 527 e-148 UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 in... 527 e-148 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 527 e-148 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 527 e-148 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 527 e-148 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 526 e-147 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 526 e-147 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 526 e-147 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 526 e-147 UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis F... 525 e-147 UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-ty... 525 e-147 UniRef50_Q01S08 Transcriptional regulator, NifA subfamily, Fis F... 524 e-147 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 524 e-147 UniRef50_A3ZU96 Probable two-component response regulator n=1 Ta... 524 e-147 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_B8GQ33 NifA subfamily transcriptional regulator n=1 Tax... 524 e-147 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 524 e-147 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 524 e-147 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-ty... 524 e-147 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 523 e-147 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 523 e-147 UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis F... 522 e-146 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 522 e-146 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 522 e-146 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 522 e-146 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 522 e-146 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 522 e-146 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 521 e-146 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 521 e-146 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 521 e-146 UniRef50_Q6ARB9 Probable two-component system response regulator... 521 e-146 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 521 e-146 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 520 e-146 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 519 e-145 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 519 e-145 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 519 e-145 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 519 e-145 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 519 e-145 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 518 e-145 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 518 e-145 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 518 e-145 UniRef50_B4ULZ7 Transcriptional regulator, NifA, Fis Family n=2 ... 518 e-145 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 518 e-145 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis F... 517 e-145 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 517 e-145 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 517 e-145 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 517 e-145 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 516 e-144 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_A0LLZ8 Transcriptional regulator, NifA subfamily, Fis F... 515 e-144 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 514 e-144 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 514 e-144 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 514 e-144 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 514 e-144 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 514 e-144 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 513 e-144 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 513 e-144 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 513 e-144 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 513 e-143 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 513 e-143 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 513 e-143 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 513 e-143 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 512 e-143 UniRef50_A9GA77 Protein kinase n=15 Tax=Bacteria RepID=A9GA77_SORC5 512 e-143 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 512 e-143 UniRef50_C9NV48 Sigma-54 dependent transcriptional regulator n=1... 512 e-143 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 512 e-143 UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis ... 512 e-143 UniRef50_A7JYI2 Transcriptional regulator n=10 Tax=Vibrionaceae ... 512 e-143 UniRef50_A6CG13 Ornithine decarboxylase inhibitor-putative sigma... 512 e-143 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 512 e-143 UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=... 512 e-143 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 511 e-143 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 511 e-143 UniRef50_A9GQL8 Protein kinase n=3 Tax=Bacteria RepID=A9GQL8_SORC5 511 e-143 Sequences not found previously or not previously below threshold: >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 670/670 (100%), Positives = 670/670 (100%) Query: 1 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK 60 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK Sbjct: 1 MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLK 60 Query: 61 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF 120 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF Sbjct: 61 SNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLF 120 Query: 121 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE 180 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE Sbjct: 121 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE 180 Query: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL Sbjct: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 Query: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL 300 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL Sbjct: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL 300 Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ Sbjct: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD Sbjct: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN Sbjct: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM Sbjct: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE Sbjct: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ Sbjct: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 Query: 661 RLGISVREVL 670 RLGISVREVL Sbjct: 661 RLGISVREVL 670 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 287/623 (46%), Positives = 392/623 (62%), Gaps = 15/623 (2%) Query: 50 PVQ-LIELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTH 108 PV+ ++ Y + + + A Y Y + FIR Sbjct: 83 PVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGH-YCLMPLAAEGHIFGGCEFIRYD 141 Query: 109 GSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHL 168 ++ ++ +I++ V + + V LL ++RD+ R+LV ITNAVLS L Sbjct: 142 DRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRL 201 Query: 169 DLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVL 228 D+D+L+++VA+EIH++F + +S+VL HRKN+ L H A + L Sbjct: 202 DMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTL 261 Query: 229 LTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS 288 + ++++ L + + L + +L N ++ L+PL G+ G L LA Sbjct: 262 TERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE 321 Query: 289 STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS-NLGIGDI 347 +F+ N LL+ IA+R+AIAV NA A++ + L+E L EN L+EQL + + G+I Sbjct: 322 EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEI 381 Query: 348 IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI 407 I +S+AM +L+QV++VA+SDSTVLI GETGTGKE+IARAIH LS R ++ +VK+NCAA+ Sbjct: 382 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 441 Query: 408 PASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQERE 467 PA LLES+LFGH++GAFTGA GRFE+AD +LFLDE+GD+PLELQPKLLRVLQE+E Sbjct: 442 PAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE 501 Query: 468 IERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPL 527 ERLG ++ I +VR+IAATNRDL +MV DR+FRSDL+YRLNVFP+ LPPLR+RPEDIPL Sbjct: 502 FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPL 561 Query: 528 LAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHL 587 LAK FT K+AR + R ID+IP E LR L + +WPGNVRELENVIERAVLLTRGN L L L Sbjct: 562 LAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSL 621 Query: 588 NVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATR 647 T + + E+E Q IV+VL+ETNG+VAGP+GAA R Sbjct: 622 PDIVLPEPETPPAATVVALEG------------EDEYQLIVRVLKETNGVVAGPKGAAQR 669 Query: 648 LGMKRTTLLSRMQRLGISVREVL 670 LG+KRTTLLSRM+RLGI ++ Sbjct: 670 LGLKRTTLLSRMKRLGIDKSALI 692 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 283/617 (45%), Positives = 392/617 (63%), Gaps = 14/617 (2%) Query: 52 QLIELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSR 111 +++ ++ + + + A+ Y Y + FIR Sbjct: 86 RILSRPDALHCNFHEFTETWPQLAASGLYPEFGH-YCLLPLAAEGRIFGGCEFIRQEDRP 144 Query: 112 FTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLD 171 ++ ++ + +I+ V + N V LL ++RD+ R+LV ITNAVLS LD+D Sbjct: 145 WSEKEYDRLHTFTQIVGVVAEQIQNRVNNNVDYDLLCRERDNFRILVAITNAVLSRLDID 204 Query: 172 DLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQ 231 +L+++VA+EIHH+F + ++S+VL HRKN+ L H A + L + Sbjct: 205 ELVSEVAKEIHHYFNIDAISIVLRSHRKNKLNIYSTHYLDEHHPAHEQSEVDEAGTLTER 264 Query: 232 TLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTL 291 ++++ L + + L + +L N ++ L+PL G G L LA + Sbjct: 265 VFKSKEMLLINLNERDPLAPYERMLFDTWGNQIQTLCLLPLMSGKTMLGVLKLAQCEEKV 324 Query: 292 FSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS-NLGIGDIIYQ 350 F+ N +LL+ IA+R+AIAV NA A++ + L+E L EN L+EQL + + G+II + Sbjct: 325 FTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGR 384 Query: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 S+AM ++L+QV++VA+SDSTVLI GETGTGKE+IARAIH LS R + +VK+NCAA+PA Sbjct: 385 SEAMYNVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRSGRRMVKMNCAAMPAG 444 Query: 411 LLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIER 470 LLES+LFGH++GAFTGA GRFE+AD +LFLDE+GD+PLELQPKLLRVLQE+E ER Sbjct: 445 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 504 Query: 471 LGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAK 530 LG ++ I +VR+IAATNRDL +MV DR+FR+DL+YRLNVFP++LPPLR+RPEDIPLL K Sbjct: 505 LGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLVK 564 Query: 531 HFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVR 590 FT K+AR M R ID+IP E LR L S +WPGNVRELENV+ERAVLLTRGN L L Sbjct: 565 AFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVVERAVLLTRGNVLQLS-LPD 623 Query: 591 QSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGM 650 + + P + + E+E Q I++VL+ETNG+VAGP+GAA RLG+ Sbjct: 624 ITAVTPDTSPVATESDKEG-----------EDEYQLIIRVLKETNGVVAGPKGAAQRLGL 672 Query: 651 KRTTLLSRMQRLGISVR 667 KRTTLLSRM+RLGI Sbjct: 673 KRTTLLSRMKRLGIDKD 689 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 676 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 284/655 (43%), Positives = 383/655 (58%), Gaps = 31/655 (4%) Query: 44 LPPPFSPVQLI-ELHVLKSNFYYRYHDDGSDVTA-TTEYQGEMVDYSRHAVLLGSSGMAE 101 L P P Q++ Y + A + + Y + + + Sbjct: 77 LAPTEGPGQVVWARQRPFVCSGEEYRRHFLKIAALRRNQRVGL--YCQMPLTTSQRRLGG 134 Query: 102 LRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDIT 161 + FI + + + D T +A +I +++ L E +Q+ L +RDH+ +LV++T Sbjct: 135 VEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEERLRGERDHNHILVEVT 194 Query: 162 NAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRC 221 NAV+S L L+DL+ +V+R IH FFG+ VS+ L D S Sbjct: 195 NAVISKLKLEDLVDEVSRSIHRFFGVDFVSLDLVDPATATIKSRSVYFQKGLGPVWGSAQ 254 Query: 222 MPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGA 281 P + + +T+ P + RAD L + + LL + G + A IPL H G Sbjct: 255 GPLGASPMAPLFETKAPRILARADLGALARGHDQMTLLTNAGFQVACGIPLLSAGHVLGV 314 Query: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH-------QL 334 L LA F++ N LL +A RI IAV NA A+ ++ L++ L +EN L Sbjct: 315 LTLASRERDKFTDYNIGLLGEVASRICIAVENALAYGEISRLKDQLSRENKQLAKERYYL 374 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 E++ GDII S A+ +L+QV++VA SDSTVLI GETGTGKE+IARAIH LS R Sbjct: 375 EEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIARAIHMLSQR 434 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 + + ++K+NCAAIP++LLES+LFGH+KGAFTGAI GRFE+AD GTLFLDE+GD+P++ Sbjct: 435 KKRTMIKVNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFLDEVGDIPID 494 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 LQPKLLR LQEREIER+GG + IPV+VR+IAATNRDL MVE R FR DL+YRLNVFP+ Sbjct: 495 LQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLYYRLNVFPIL 554 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 +PPLR+R EDIPL+A +F +K AR MNRAI+A E + L++ WPGNVREL+NVIERA Sbjct: 555 IPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNLPWPGNVRELQNVIERA 614 Query: 575 VLLTRGNSLNLHLNVRQSRLLP--------------------TLNEDSALRSSMAQLLHP 614 V+LT+G L+L + L P + L +P Sbjct: 615 VILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSAASAPDPLPPPAGSSPNP 674 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + ER +I++VLRETNGIV GPRGAA LGMKRTTLLSRM+RLGIS +EV Sbjct: 675 GDLAGEAIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRMRRLGISPKEV 729 Score = 66.0 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 4/182 (2%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + + +L+D++ + + DL+ L+ + V+++L D + D+ Sbjct: 9 ERYELLLDVSEILELNRDLNSLLGALCDLPASIGLFDYVNLLLYDAPTDTMTLFSQGDVG 68 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 + + ++P + + + + L G +P Sbjct: 69 GGYARIDG--LAPTEGPGQVVWARQRPFVCSGEEYRRHFLKIAALRRNQRVGL--YCQMP 124 Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 LT G + + T + E++ L+ +A IAI+V NA +E L+ E Sbjct: 125 LTTSQRRLGGVEFISSRPTTYDEDDLTFLRRVASVIAISVENALIGEMRQMEEERLRGER 184 Query: 332 HQ 333 Sbjct: 185 DH 186 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 233/583 (39%), Positives = 335/583 (57%), Gaps = 20/583 (3%) Query: 83 EMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQV 142 + + + + ++ + +A + LN E QV Sbjct: 130 GFQSICALPLTTVHRRIGSVAVASKRPDAYCKEEVRFLSLVADQAALAIDDALNFETSQV 189 Query: 143 ALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEK 202 A L++ D R+L+++ N++ S+L+L +L+ ++ I V + L + + Sbjct: 190 AQAALQRKNDRLRLLLEVNNSIASNLELRELLRAISASIRPVMQCDGVGVALPEGENQQL 249 Query: 203 FSLWCSDLSASHCACLPRCMPG-ESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 + + +P E + Q +P A DP L + Sbjct: 250 RVYALDFPNGNGRVREDILIPANEDSPGARAFQNGEPANILSAS------IDPTDPLATA 303 Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 G ++ IPL N T G L LA FS + + L + +++AIAV NA A+ ++ Sbjct: 304 EGLKAVCHIPLISRNRTVGLLSLARLEPVAFSPRDIEFLSLVGNQVAIAVENALAYHEIS 363 Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 L++ L QE L +++ S L +I+ +SQA+ +LQ+++ VA +DSTVLI GETGTGK Sbjct: 364 ALKDRLAQEKIYLEDEIRSELNFEEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGK 423 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E+IARAIH LS R VK+NCAAIP LLESE+FGH+KGAFTGA+ GRFE+A G Sbjct: 424 ELIARAIHNLSSRSRNSFVKLNCAAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHG 483 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 T+FLDEIG++PLELQPKLLRVLQERE ERLG SRT+ + R+IAATNRDL MVEDR FR Sbjct: 484 TVFLDEIGEIPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRDLATMVEDRNFR 543 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 +DLFYRLNVFP+++P LRDRPEDIPLL +HF Q+ AR M +A+D IPTE + L+ + WP Sbjct: 544 ADLFYRLNVFPVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTETMNVLVRYHWP 603 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GN+REL+N++ERAV+L+ G L + LN Q + + Sbjct: 604 GNIRELQNLLERAVILSAGPVLKVPLNDLQLQAPAPTTARKT-------------ETLES 650 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 ER+ I++ L + +++GP+GAA LG+KR+TL +RM++LGI Sbjct: 651 AERRHILEALEAADWVISGPKGAAEALGLKRSTLQARMEKLGI 693 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/266 (8%), Positives = 68/266 (25%), Gaps = 10/266 (3%) Query: 82 GEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQ 141 + ++ + + L R F+ +D + + + +++ L E Sbjct: 304 EGLKAVCHIPLISRNRTVGLLSLARLEPVAFSPRDIEFLSLVGNQVAIAVENALAYHEIS 363 Query: 142 VALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE 201 L +++ + + + + V +EI S ++ G+ + Sbjct: 364 ALKDRLAQEKIYLEDEIRSELNFEEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGK 423 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLT----QTLQTRQPTLTHRADDLFLWQRDPLLL 257 + +S + ++ + + T Sbjct: 424 ELIARAIHNLSSRSRNSFVKLNCAAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHG 483 Query: 258 LLASNGCESALLIPLTFGNHTPGAL---LLAHTSSTLFSEENCQLLQHIADRIAIAVGNA 314 + + IPL L S+ + +L+ +A V + Sbjct: 484 TVFLDEIGE---IPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRDLATMVEDR 540 Query: 315 DAWRSMTDLQESLQQENHQLSEQLLS 340 + + + L ++ Sbjct: 541 NFRADLFYRLNVFPVQVPALRDRPED 566 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 245/610 (40%), Positives = 358/610 (58%), Gaps = 11/610 (1%) Query: 66 RYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLAR 125 R+ + +T Y G + Y + + S + + FI + F + LA Sbjct: 99 RFRHRCEQLASTPVYDG-LHSYCQLPITTARSHLGGVEFISREANAFPMETLAKLTQLAA 157 Query: 126 IITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFF 185 I+ L++ L+ E L +RD ++LVD+TNAV+ + + +L + +HH F Sbjct: 158 IVAIALENVLDKERTLEQANSLRLERDSCKILVDVTNAVIKLVRIAELPQSLFTILHHHF 217 Query: 186 GLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD 245 G++S+ + + ++ F + + + E L L +P +R Sbjct: 218 GISSLCLAEYNA-TSDSFKSYLVNQQQREQPGIINHSCFEKNCLQGALGHSEPFFLYREQ 276 Query: 246 DLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 + +S+ ++PL + + G L+L+H + F++ + LL+ +A Sbjct: 277 GHGCQSSCRFTSQILPPDADSSCILPLRYRGNLLGVLILSHPQADFFADLDISLLEQVAA 336 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 R AIA+ N A + +++ + +E + +IIYQS ME +L++V +VA Sbjct: 337 RTAIAMNNVQAQQEISNTTGA--REKTLRVDGPAPQGDFANIIYQSAVMEKVLEKVKLVA 394 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 +SD TVLI GETGTGKE+IA+AIH LS R D +VK+NCAAIP L+ES+LFGH+KGAFT Sbjct: 395 QSDCTVLILGETGTGKELIAQAIHALSARHDHEMVKVNCAAIPTGLIESDLFGHEKGAFT 454 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA+ GRFE A GTLFLDE+GD+PL+LQPKLLRVLQE E+ER+G S I ++VR++A Sbjct: 455 GALTQRIGRFERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVA 514 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATN DL MV++++FRSDL+YRLNVFP+ELPPLR+R EDIPLL F +K+A+ M R I Sbjct: 515 ATNCDLLSMVKNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTIT 574 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL---HLNVRQSRLLPTLNEDS 602 +IP +A++ L+S W GN+RELEN+IERAV++TRG+ LNL L + Sbjct: 575 SIPADAMKMLVSLPWYGNIRELENIIERAVVMTRGHVLNLSPDELLPLKGFHKIETLVYD 634 Query: 603 ALRSSMAQLLHPTTPENDEE----ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 + + P P+ DE ER I++ L+ NGIVAG RGAA RLGMKRTTLLS+ Sbjct: 635 EPARELFREPLPALPQGDEAQGEDERVSIIRALKACNGIVAGERGAAQRLGMKRTTLLSK 694 Query: 659 MQRLGISVRE 668 M+RLGIS ++ Sbjct: 695 MKRLGISAKD 704 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 227/622 (36%), Positives = 351/622 (56%), Gaps = 31/622 (4%) Query: 68 HDDGSDVTATTEYQG-----------EMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQD 116 D + T YQ + +Y + + + + + + +I S+ Sbjct: 101 RDYCHQMDGETLYQTFPQLENHPAYDSVFNYCKIPLSICNQPLGAIEYINL-TMPDDSES 159 Query: 117 CTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIAD 176 F +I+ +++ + + L ++++ +VLVD+TN V+S +LI Sbjct: 160 EKQFKLFNNMISAMIEHIIEHQTASTFTEKLTTEKNNFQVLVDVTNTVISQSTKKELIGS 219 Query: 177 VAREIHHFFGLASVSMV-LGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQT 235 + R ++ F + +S++ L D N+ + + ++ C L+ ++ Sbjct: 220 LLRFLYQHFDMTDLSIIQLQDGHYNQHSACFINNEIDYQCHFFTN-----DKLIKNAIKN 274 Query: 236 RQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEE 295 +P + D + + + ++A ++PL F G + + Sbjct: 275 NKPVFLNAIDIKKMQADN--NSPYFPSRVKTACVMPLVFRGIAVGYISFMKPIEAPYQNT 332 Query: 296 NCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAME 355 + +L + IA R+A+A+ + ++ T Q + N + E + ++ DII QS+ M Sbjct: 333 DLELFKQIAARVALAMHSIKTHQASTPNQPITKFVN--IDEGMGEHVIFDDIISQSEVMN 390 Query: 356 DLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESE 415 +L+QV +VA DSTVLI GE+GTGKE+IARAIH+LS R +VK+NCAAIPA L ESE Sbjct: 391 KVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSKTDMVKMNCAAIPAGLFESE 450 Query: 416 LFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSR 475 LFGH++GAFTGAI+ GRFE A GTLFLDEIGD+PLELQPKLLR LQE EIER+G + Sbjct: 451 LFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLRALQENEIERVGKNA 510 Query: 476 TIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQK 535 I V+VR++ ATN DL + VE+++FR+DL+YRLNVFP+++PPLR+R EDIPLL KHFT++ Sbjct: 511 LISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIPPLRERAEDIPLLVKHFTRE 570 Query: 536 MARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN----VRQ 591 +A+ M + I AI E L + + WPGNVREL N +ER+V+LTRGN LN+ ++ V Sbjct: 571 LAKKMGKTITAIAAEDLAVMSVFPWPGNVRELRNFVERSVILTRGNVLNVPVHELKAVSH 630 Query: 592 SRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI-----VQVLRETNGIVAGPRGAAT 646 S +PT + + P + + I ++ L+ +G+VAGP GAA Sbjct: 631 SACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADVIKALKACHGVVAGPNGAAN 690 Query: 647 RLGMKRTTLLSRMQRLGISVRE 668 +LG+KRTTLLSRMQ++GI+ ++ Sbjct: 691 QLGLKRTTLLSRMQKMGINSQD 712 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 231/662 (34%), Positives = 358/662 (54%), Gaps = 62/662 (9%) Query: 54 IELHVLKSNFYYRYHDDGSDVTATTEYQG--EMVD---------YSRHAVLLGSSGMAEL 102 + LH + S YY D++ YQ ++VD Y + +L+ + + Sbjct: 93 LALHKIASCEYY------HDISGHELYQTFPQLVDHPAYYDVNRYCKIPLLIAGKPLGAI 146 Query: 103 RFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITN 162 +I H + + F +I +++ + + + L ++ + +VLVDITN Sbjct: 147 EYI-NHKLADSIESERQFKLFNNMIAAMIEHIIEHQLASDFTQQLSNEKKNFQVLVDITN 205 Query: 163 AVLSHLDLDDLIADVAREIHHFFGLASVSMV-LGDHRKNEKFSLWCSDLSASHCACLPRC 221 V+S +LI+ + ++ F + +S++ L D+ + F ++ + HC Sbjct: 206 TVISQSTKKELISSLLHFLYQHFAMTELSIIQLQDNHYMQMFCGLNNNNTEFHCHFF--- 262 Query: 222 MPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGA 281 + ++ ++ +P L + Q + + +SA ++P+ F T G Sbjct: 263 --NDDKMIKHAIENNKPVLLDHNQLEQIRQDE--NGPYFPSKVKSACIVPMVFRGLTIGY 318 Query: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSN 341 + + + + + +L+Q IA R+A+A+ + A ++ E+ ++ + E + Sbjct: 319 ICYMKRETLNYQQYDIELVQQIASRVALAMHSIKAHQATLPRTET--EQYVSIEESYDEH 376 Query: 342 LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 DII QS+AM +L++V +VA DSTVLI GE+GTGKE+IARAIH++S R +VK Sbjct: 377 AIFDDIISQSEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAIHKMSLRSKTRMVK 436 Query: 402 INCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 +NCAAIPA L ESELFGH++GAFTGAI+ GRFE A GTLFLDEIGD+PLELQPKLLR Sbjct: 437 MNCAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLR 496 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 LQE EIER+G ++ I V+VR++ ATN DL MV+ +QFR+DL+YRLNVFP+E+PPLR R Sbjct: 497 ALQENEIERVGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRLNVFPIEVPPLRQR 556 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 EDIPLL KHF +++A+ M + I AI L + + WPGNVREL N +ER+V+LTRG+ Sbjct: 557 AEDIPLLVKHFARQLAQKMGKKITAIAASDLELMQRFSWPGNVRELHNFVERSVILTRGH 616 Query: 582 SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE-------------------- 621 LN+ ++ S + + S + + Sbjct: 617 VLNIPVDELISLQPHIVQNSRKMESQASLSKTSLKQAQELPQVASIDDLTSSGSESVCSV 676 Query: 622 --------------EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 ++ I+ L+ G++AGP GAA LG+KRTTLLSRMQ++GIS + Sbjct: 677 DTAAKNEVKKVRPIVDQSMIINALKRCQGVIAGPNGAANMLGLKRTTLLSRMQKMGISSQ 736 Query: 668 EV 669 + Sbjct: 737 DY 738 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 197/626 (31%), Positives = 313/626 (50%), Gaps = 46/626 (7%) Query: 72 SDVTATTEY---QGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIIT 128 +DV+ +Y + E+ +++ + + + FT + + + LA Sbjct: 95 NDVSKDPDYIQVKEEIKSELVAPMIVEDDIIGVISLDSNRLNAFTPEMLEIVSVLANQAG 154 Query: 129 PVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLA 188 + ++ +R LE+ L++I+ V S LD +++ + + L Sbjct: 155 QIFKNLQ-------TIRSLEQRTKIQATLIEISKVVSSTLDQNEVFDSIMVTMEKSLRLE 207 Query: 189 SVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF 248 S+VL + + + S LS PGE + + ++ +P + Sbjct: 208 KGSIVLFNKEEALLRIVAASGLSPEEIEK-GTYQPGEGIT-GKVYESGEPIIIESVASHP 265 Query: 249 LWQRDPLLLLLASNGCE--SALLIPLTFGNHTPGALLLAHTSSTLFSEEN-CQLLQHIAD 305 + L + S L P+ T G + + ++ LQ +A Sbjct: 266 DFLNRVGYLSHFKHDPHNVSLLCAPILSEQTTLGVVNAFIVQNKHTDLKSFLDFLQVVAS 325 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 I+ ++ + + + ++ + +EN QL +L + G +I ++ +ME + +++ +VA Sbjct: 326 IISQSIKIQNL---VEEAKKEISRENIQLKRELKNKYKFGSLIGKAASMEKMFEKIQLVA 382 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 S ++VLI GE+GTGKE+IA AIH S R + P VKINCAAIP +LLESELFGH KG+FT Sbjct: 383 DSRASVLITGESGTGKEMIANAIHYNSSRSENPFVKINCAAIPENLLESELFGHKKGSFT 442 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA+ +G+FE+AD GT+FLDEIG++ L LQ KLLRVLQEREIE +G ++ V+VR+IA Sbjct: 443 GAVTDKKGKFELADTGTIFLDEIGEMDLNLQSKLLRVLQEREIEAIGSTKAKKVDVRIIA 502 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATN +L Q+V +++FR+DLFYRLNV + PPLRDR EDIPLL HF +K + N++I Sbjct: 503 ATNAELEQLVAEKKFRADLFYRLNVVKINTPPLRDRVEDIPLLMNHFLEKYTKDNNKSIK 562 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS--- 602 I EA R L+ + WPGNVRELENVIERAV+L + LN + + +++ Sbjct: 563 GISREASRLLLKYRWPGNVRELENVIERAVVLAQDEILNEEDFSDILSNMEEMPDNTVEV 622 Query: 603 ------------------ALRSSMAQLLHPTTPEND----EEERQRIVQVLRETNGIVAG 640 + R + QL + E E + I +++ Sbjct: 623 SHSNHVESVSGAEPLDLGSGRLTSGQLDGLDGRAMEIVVSEVESRLIQYAMKKFR---YT 679 Query: 641 PRGAATRLGMKRTTLLSRMQRLGISV 666 A LG+ R TL +++ L I Sbjct: 680 KTRVAKFLGINRNTLDKKIKELNIEY 705 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 201/591 (34%), Positives = 318/591 (53%), Gaps = 31/591 (5%) Query: 92 VLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDR 151 ++ + + + + + F++ D L + ++ ++ + L +E +++ Sbjct: 504 LMHNNEVFGGMTLLAENINSFSADDMRLIERFSYHLSGLVANMLANE-------AIQQRE 556 Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 +L+ + + + LIA + + + F +++ + + K L Sbjct: 557 KEKEILLSFSADIARTRGAEALIAVMRQRLKSIFHFNDITVGIFNAEKTAFKVLVADVEE 616 Query: 212 ASHCAC-----LPRCMPGESVLLTQTLQTRQPTLTH-RADDLFLWQRDPLLLLLASNGCE 265 P + L + +P L + + R P + + G + Sbjct: 617 RRTSHPEFKEIAFAEYPIADGIHDMLLHSDKPELFYIENLLMKNPGRHPGIQFIFERGIK 676 Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADA-------WR 318 + L N G + + F + LL+ I+D++A+AV N A + Sbjct: 677 EIAGVKLVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAVANILADEKIGQQLK 736 Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 + +E L++E L +++ S DII M+ + + V+ + STVLI GETG Sbjct: 737 EINGYKEKLEEEKLYLQQEISSVYTHTDIIGAGPEMQRVFHMLSQVSFAQSTVLILGETG 796 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 TGKE+IARAIH SPR++K +VK+NCAA+PA+L+ESELFGH++G+FTGAI G+FE+A Sbjct: 797 TGKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSFTGAIERRIGKFELA 856 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 + GTLFLDEIG++PL+LQ KLLR +QEREIER+GG TI +VR+IAATNR+L + V + Sbjct: 857 NHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRNLQKEVAEG 916 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558 +FRSDL+YRLNVFP+ LPPLRDR EDI LLA HF ++ AR R + + A++QL ++ Sbjct: 917 RFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSSTAMKQLTAY 976 Query: 559 DWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE 618 +WPGNVRELE+V+ER++LLT+GN + Q + + ++ + Sbjct: 977 NWPGNVRELEHVLERSILLTQGNIIREIHLSSQPKSEAKVRQE-----------EDFSRT 1025 Query: 619 NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 DE ER I+ VL + G + GP GAA LG+ +TL R+++LGI Sbjct: 1026 LDEMERDYILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLGIQKEHT 1076 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 176/528 (33%), Positives = 277/528 (52%), Gaps = 19/528 (3%) Query: 143 ALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEK 202 A L +D L +IT + S DL +A + + GL + ++ + + + Sbjct: 22 ATEPLPRDYADLACLYEITRELASSADLRVCLAKILAILSRQKGLNNGAVTIINPLTGQI 81 Query: 203 FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 + ++ GE + + + + P + R + L+ Sbjct: 82 ETEVAHGITV-EARKKGTYRIGEGIT-GRVVASGAPIVVPRISEEPLFLDRTSARRSRGE 139 Query: 263 GCESALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 S + +P+ G T GAL + E++ + L ++ +A V + Sbjct: 140 EL-SFICVPIRRGPDTIGALSVDREYREGEEFEQDLRFLTILSGLVAQTVKRVQL---VN 195 Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 Q+ L+QEN QL +L + I+ S M+++L+ + VA S++TVL+ GE+GTGK Sbjct: 196 QEQQRLEQENSQLRRELSEKYRVSSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGK 255 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 ++ARA+H S R P + +NC+A+P +LLESELFGH++GAFTGA T +GRFE+A+GG Sbjct: 256 SMVARAVHHNSKRAAGPFITVNCSALPETLLESELFGHERGAFTGAHETRKGRFELAEGG 315 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDEIG+L +Q KLL V+Q+RE +R+GGSR + +VR+I ATN+DL + V + FR Sbjct: 316 TLFLDEIGELSTAVQVKLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFR 375 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL+YRLNVFP+ LPPLR+R DI LLA+ F +K A ++ I I T A+ L + WP Sbjct: 376 EDLYYRLNVFPIYLPPLRERRTDILLLAEFFLEKFASENDKNIRRISTPAIDLLTQYHWP 435 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GNVREL+N +ERAVL+ +++ + + +L E S T + Sbjct: 436 GNVRELQNCLERAVLICDEDTIKSYHLPPTLQSSDSLREVSPSS---------FTAAVES 486 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 ER+ I+ L++T+G AA L + ++++ I R Sbjct: 487 FERELIIDALKKTDG---NQTRAAALLETSLRIINYKIKKYAIEPRRY 531 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 183/543 (33%), Positives = 274/543 (50%), Gaps = 31/543 (5%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 + +I+ + S LDL + +V + V + L L Sbjct: 8 RSVNLELVTIYEISKILGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQDSGE--LQLVS 65 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 + + R GE + + QT P + L+ S Sbjct: 66 AIGLSYEEFQSGRYRVGEGIT-GKIFQTETPIVVRDLAQEPLFLARTSPRQSQDGEVISF 124 Query: 268 LLIPLTFGNHTPGALLLAHTSSTLFSEEN--CQLLQHIADRIAIAVGNADAWRSMTDLQE 325 + +P+ G L + + + +LL +A+ I V +RS+ ++ Sbjct: 125 VGVPIKAAREMLGVLCVFRDGQSPSRSVDHEVRLLTMVANLIGQTV---RLYRSVAAERQ 181 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 LQ+E QLS QL + ++I S+AM+++ QV A S ST+L+ GE+GTGKEVIA Sbjct: 182 QLQEEKRQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIA 241 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 RAIH LSPR+D P +K+NCAA+ +LLESELFGH+KGAFTGA +GRFE+A GGTLFL Sbjct: 242 RAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFL 301 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIG++ Q KLLRVLQERE ER+GGSR+I V+VR++ ATNRDL + V +FR+DL+ Sbjct: 302 DEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLY 361 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YR+NV + +PPLR+R EDIP L +HF +K RA+ A+ +A++ +M+ WPGNVR Sbjct: 362 YRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNVR 421 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSR------LLPTLNEDSALRSSMAQLLHPTTPEN 619 ELEN +ER + RG+ + Q L + + + ++ P Sbjct: 422 ELENCVERTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAIF 481 Query: 620 DEE--------------ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 E ER+R++ + + + AA L + + +Q+ I Sbjct: 482 AEWDGQGQATGAAPPTSERERLIWAMEQCGWV---QAKAARALNISPRQMGYALQKFNIE 538 Query: 666 VRE 668 V++ Sbjct: 539 VKK 541 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 180/516 (34%), Positives = 267/516 (51%), Gaps = 19/516 (3%) Query: 154 HRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSAS 213 ++L I + + DL L++ + + + M+L D + F L+ Sbjct: 52 LQILFRINQVLTQNADLATLVSIILDGMRQQMRMQRGVMMLYDRHSDAIFIHDSFGLTEE 111 Query: 214 HCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE-SALLIPL 272 PGE + + ++T +P + R D + + + +P+ Sbjct: 112 E-RGRGIYAPGEGIT-GKVVETGKPIIIPRVIDSPDFLDRTRAHNKGRKQDKLAFFCVPI 169 Query: 273 TFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 G + + ++ +LL +A IA AV + L+ EN Sbjct: 170 VLAQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYLIE---NVDKVRLETEN 226 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 +L +L +II S+ M+++ V VA + +TVL+ GE+G GKE++A A+H Sbjct: 227 RRLKSELKQRFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASALHYN 286 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 SP D P +K NCAA+P +L ESELFGH++GAFT AI TH+G FE A GGT+FLDE+G+L Sbjct: 287 SPVADGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEVGEL 346 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 L Q KLLRVLQER ER+GG++ + V+VR+IAATNR+L +MV + FR DLFYRLNVF Sbjct: 347 SLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVF 406 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ +PPLRDR D+ LA HF + + + I I T A+ LMS+ WPGNVRELENVI Sbjct: 407 PITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGNVRELENVI 466 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 ER+V+L ++ + + + E + IV+ L Sbjct: 467 ERSVILAEEGVIHGYDLPPSLQTP---------TETGTGFSGTLEDRVTAVEYEMIVEAL 517 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + +NG V AAT LG+ R L RM+R G++ + Sbjct: 518 KASNGNVG---QAATTLGLTRRMLGLRMERHGLTYK 550 >UniRef50_A7HFP7 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Myxococcaceae RepID=A7HFP7_ANADF Length = 674 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 320/574 (55%), Gaps = 18/574 (3%) Query: 103 RFIRTHGS-RFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRL-LEKDRDHHRVLVDI 160 R++R GS + S +L ++ + D +++ LR L+ +R+ R+L+D+ Sbjct: 109 RYVRKGGSVMWVSNSVSLVPPRGGSRRILILGLVEDITERMRLRDELDAERNRLRLLLDV 168 Query: 161 TNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPR 220 +++HLDL ++ +A + + + L D E Sbjct: 169 NELLVAHLDLREMFQALASSLRRVTDCHFIGLALPDAATGELRQHIVDHPDGKGAITEGM 228 Query: 221 CMPGESVLLTQTLQTRQPTLTHRADDLFL-------WQRDPLLLLLASNGCESALLIPLT 273 +P + +T P L + + + + G S ++PL Sbjct: 229 VLPLHGSASGKAFRTGAPVLLNDPEANRQDPDLYGTPEGARFYRTVLEEGVPSGYVLPLV 288 Query: 274 FGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQ 333 G L L + F E + + +A +++IAV NA +R + + +E L +E Sbjct: 289 HRGEVLGVLQLKKYADARFKEREIEFMSKVAGQLSIAVANALEYREVKESKERLDRERVY 348 Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L E++ S +II S+ ++ +L Q+D VA +DSTVLI GETGTGKE+IARAIH S Sbjct: 349 LKEEIRSAHDFEEIIGVSRTLKQVLGQIDTVAVTDSTVLILGETGTGKELIARAIHNRSR 408 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 RRD+P VK+NC+AIP LLESELFGH++GAFTGA GRFE AD GTLFLDEIGDLP+ Sbjct: 409 RRDRPFVKVNCSAIPTGLLESELFGHERGAFTGATAPRIGRFEAADQGTLFLDEIGDLPV 468 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 +LQPKLLRVLQERE ERLG SRT V+VRV+AATNR L MV + +FR DL+YRLNVFP+ Sbjct: 469 DLQPKLLRVLQEREFERLGASRTRRVDVRVVAATNRGLATMVGEGRFREDLYYRLNVFPI 528 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 LPPLR+R DIPLL +HF AR M + ID IP ++R L+ + WPGNVREL+NVIER Sbjct: 529 TLPPLRERAGDIPLLVRHFVGVYARRMGKQIDHIPDASMRALVGYHWPGNVRELQNVIER 588 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 AV+LT G L L L A E ER+ I+ L+E Sbjct: 589 AVILTPGAVLELAL---------AERAAGAREDRPDAAAPNGHRTLQEVEREHILGALQE 639 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 ++ GP GAA RLG++RT+L+ RM++LGI+ Sbjct: 640 AKWVIGGPNGAAARLGLRRTSLMYRMEKLGIARP 673 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 175/519 (33%), Positives = 265/519 (51%), Gaps = 19/519 (3%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 +L I+ + + DL D ++ V + + + L D R F Sbjct: 27 RVKMLPILYKISQIITGNADLADALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFG 86 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 L+ GE + + ++T + + R + + + + Sbjct: 87 LTEEE-KKRGIYAVGEGIT-GKVVETGKAIVARRLQEHPDFLGRT-RVSRNGKAKAAFFC 143 Query: 270 IPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +P+ G + + +++ +LL IA IA V + L+ Sbjct: 144 VPIMRAQKVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYLIE---NIERVRLE 200 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 EN +L L +II S+ M+++ + + VA + +TVLI GE+G GKE++A AI Sbjct: 201 NENRRLKHALKERFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAI 260 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H SP + LV NCA +P +L ESELFGH+KG+FTGA+ H+G FE ADGGT+FLDE+ Sbjct: 261 HYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEV 320 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+L +Q KL+RVLQ R ER+GGS+ + V+VR+IAATNR+L +MVE FR DL+YRL Sbjct: 321 GELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRL 380 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVFP+ +PPLR+R D+ LA HF +R + + I T AL LMS+ WPGNVRELE Sbjct: 381 NVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELE 440 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 NV+ERAV+L+ + ++ + + + S + E + IV Sbjct: 441 NVMERAVILSDDDVIHSYNLPPSLQ---------TSKESGTAFGLTLEEKIKAVECEMIV 491 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + L+ ++G + AA LG+ R L RM+R GIS + Sbjct: 492 EALKNSSGHIG---EAAKELGLARRMLGVRMERYGISYK 527 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 173/564 (30%), Positives = 276/564 (48%), Gaps = 48/564 (8%) Query: 138 EEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDH 197 E ++ E+ + +L +I+ A+++ D++ ++ V + G+ + + + Sbjct: 2 ETVNQNIKTNEEQPNELTLLAEISRALINEEDINKILRLVLLIMSEHMGMLRGVITIFNR 61 Query: 198 RKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLL 257 E LS A R GE ++ Q ++T +P + L+ Sbjct: 62 DSGEIVIKESFGLSPEEQAR-GRYKLGEG-IIGQVVETGKPVVVPSIAKEPLFLDKTRSR 119 Query: 258 LLASNGCESALLIPLTFGNHTPGALLLAHT----------------------SSTLFSEE 295 + +P+ G G L Sbjct: 120 EKDEKNDLCFVCVPIRAGQEVIGTLSADRKVSSKNPRVALTQTQGGKQTRGCGENGMFNS 179 Query: 296 NCQLLQHIADRIAIAVGNADAWRS--MTDLQESLQQENHQLSEQLLSNL----------G 343 + LL IA I+ AV + + +LQ + Sbjct: 180 DVNLLSIIAAMISQAVRLRQVAHEENLYHWKSNLQISAPEGKSHNSDVFDNPNSIEVGEQ 239 Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 +II +++M + + +D +A +++TVLI GE+G GKE++A AIH S R P +K N Sbjct: 240 PANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFN 299 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAA+P S++ESELFGH++GAFTGA T +GRFE+A+ GT+FLDE+G+L L +Q KLLR+L Sbjct: 300 CAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRIL 359 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QE+E ER+GG++TI +VR+IAATNR+L + +++ +FR DLFYRLN+FP+ +PPLR+R Sbjct: 360 QEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKS 419 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 DI LLA +F +K + + + I T A+ LM + WPGNVRELEN +ERAV+L+ + Sbjct: 420 DILLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILSDDGVI 479 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 + + + SS P D E + IV+ L+ T G ++ Sbjct: 480 HGYHLPPTLQ---------TAESSGTPCAGPLQQRLDALEYELIVEALKNTKGNMS---K 527 Query: 644 AATRLGMKRTTLLSRMQRLGISVR 667 AA LG+ + R+++ I R Sbjct: 528 AAMELGLTDRVMGLRVKKFDIDFR 551 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 209/618 (33%), Positives = 313/618 (50%), Gaps = 34/618 (5%) Query: 62 NFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFN 121 Y D + + L + FT +D N Sbjct: 277 CERYITARSCRD-------NFGVRSLVLFPIQLKRKAFTTIILSSIRADGFTQKDYQAVN 329 Query: 122 WLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREI 181 +A I L + L EE +E R + I NA + D +I VA I Sbjct: 330 LIAPQIALALDNLLAYEE-------IEARRQTKTTELAIVNAFQNGKDSHAIIPQVAAII 382 Query: 182 HHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTR----- 236 + +++ + L Q + Sbjct: 383 NELMPFDLLAVYRIGRLLESAAIDMAVQKQGGVFVAITEKDVVPQTLADQASWKQALADM 442 Query: 237 -----QPTLTHRADDLFLWQRDPLLL-LLASNGCESALLIPLTFGNHTPGALLLAHTSST 290 +P + + + QR + + G +S++ +P+ AL+LA ++ Sbjct: 443 ETWLVEPAINVGQQFVDIQQRSVVSRFYAEALGLKSSMYVPIFSKGKPIAALILASKAAY 502 Query: 291 LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQ 350 F+ ++ LQ I+ +A+A+ N A+ + L E L+QE L+E++ ++ +II Sbjct: 503 AFTPKDLCTLQDISVELALALENLSAYERIKVLSEHLEQEKTYLAEEIKTSHNFEEIIGT 562 Query: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 S +M+ + + VA +D TVLI GETGTGKE+IARA+H LS RRD+P+VKINCAA+PA Sbjct: 563 SSSMQTVFNAIGQVAPTDYTVLIMGETGTGKELIARAVHSLSARRDRPVVKINCAALPAQ 622 Query: 411 LLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIER 470 L+ESELFGH++G+FTGA G+FE+A+GGTLFLDEIG+LPLELQ KLLR +QE+EIER Sbjct: 623 LIESELFGHERGSFTGATEKRIGKFELANGGTLFLDEIGELPLELQAKLLRAIQEKEIER 682 Query: 471 LGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAK 530 +GG I +N R+IAATNR+L Q V +FRSDL+YRLNVFP+ +PPLR+R EDI L Sbjct: 683 VGGKGVILINTRIIAATNRNLQQEVAAGRFRSDLYYRLNVFPIVVPPLRERQEDILPLTM 742 Query: 531 HFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVR 590 HF QK+++ + + I I +L+QL+ + WPGN+RELE+V+ER+ +L++ +L L +R Sbjct: 743 HFLQKISKKLGKPITNIANASLQQLLQYPWPGNIRELEHVLERSSILSQSATLTLAEPLR 802 Query: 591 QSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGM 650 + D+ R I+ L ++ + G GAA L + Sbjct: 803 ---------AATTAFPPFVVQSSEEVKSIDDAMRLAILAALAKSGNRIRGTGGAAELLNI 853 Query: 651 KRTTLLSRMQRLGISVRE 668 K TTL +RM++L IS + Sbjct: 854 KPTTLEARMKKLNISAYQ 871 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 179/526 (34%), Positives = 268/526 (50%), Gaps = 13/526 (2%) Query: 147 LEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW 206 + + R+L D++ + D+ + + + + L E Sbjct: 1 MRETVSELRLLFDLSQVIDHSRDISHSLEATLSLMAQHLHMMRGMITLVSPHTGEIRIEV 60 Query: 207 CSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCES 266 L+ + + + +Q+ QP + ++ L + + Sbjct: 61 AHGLNPAEQRRG--HYALGEGVTGRVIQSGQPMVVSNVSASPIFLNRTRSRDLQKDTI-A 117 Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 + +P+ F + GAL + + + EE+ ++L IA IA A A A +++ D + Sbjct: 118 FICVPIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHA---ARARQNVMDERV 174 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 + +EN +L L + L + S AM + +Q+ VA S +TVL+ GE+GTGKE+ A Sbjct: 175 AAIEENMRLRNALSAPLRPHGFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGKELAA 234 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 AIH R P + +NCAA+P +L+ESELFGH+KGAFTGA +GRFE+ADGGTLFL Sbjct: 235 HAIHSAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELADGGTLFL 294 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DE+G+L L Q KLLRVLQER ERLGG+ ++ V+VR+I ATNRDL +MVE+ FR DL+ Sbjct: 295 DEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRRDLY 354 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNVFP+ +PPLR+R DI LA +F K A R+ I + L + WPGN+R Sbjct: 355 YRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDMLQRYTWPGNIR 414 Query: 566 ELENVIERAVLLT-RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ--LLHPTTPENDEE 622 ELENV+ERAVLL + + R+ +A + + DE Sbjct: 415 ELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTLQDRLDEL 474 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 ER I L G + AA LG+ + RM++ GI+ ++ Sbjct: 475 ERACITDALARHKGHMG---HAAQALGLTERVMALRMKKHGINYKD 517 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 198/532 (37%), Positives = 274/532 (51%), Gaps = 26/532 (4%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 I+ + S DLD + + + GL S++L ++ +E + LS Sbjct: 9 AELTAFFAISRELASSPDLDGALKRILEIMDEKLGLHRSSILLLENDSDELRTEIAHGLS 68 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRD-PLLLLLASNGCESALLI 270 R GE + L+T P + + AS G + L + Sbjct: 69 EEEIRK-GRFKEGEGIT-GAVLKTGDPIVVPDISREPRFLNRTGSRSERASRGKLAFLAV 126 Query: 271 PLTFGNHTPGALLLAHTSSTL--FSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 PLTF G L T +E ++L I+ IA AV + + ++ L+ Sbjct: 127 PLTFQARKVGVLSADCTIEPGSGNLDEELRVLTTISSIIAQAV---ILRKQFVEERKKLE 183 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 + +L L I I +S+ M+ + + V +VAKS +TVLI GE+GTGKEV+A+AI Sbjct: 184 ERALRLEHHLKDRYSIEGWIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAI 243 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H SPR +P V+INCAAIP SLLESELFGH+KGAFTGA + G+FE A GTLFLDE+ Sbjct: 244 HFNSPRNRRPFVQINCAAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEV 303 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G++ +Q KLLRVLQER +ER+GG++TIPV+VR+IAATNR+L + + QFR DL+YRL Sbjct: 304 GEISPAVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRL 363 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NV P+ LPPLR R EDIPLL HF + + R+ I EA+ L+ DWPGNVRELE Sbjct: 364 NVVPIYLPPLRQRKEDIPLLVNHFLGRFNQENGRS-MTISPEAISALIEHDWPGNVRELE 422 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP-------------- 614 N +ER V++T+ +S+++ R L P+ Sbjct: 423 NTMERLVVMTQADSIDITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLL 482 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 E ER +I+ VL T I AA LG+ L RM + GI Sbjct: 483 LPEAVSELERAKILDVLDRTGWI---KTRAAALLGITPRQLGYRMMKYGIDP 531 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 182/532 (34%), Positives = 269/532 (50%), Gaps = 21/532 (3%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 + + L I+ + S LD+ + + +H + ++VL + + Sbjct: 9 DTAHLELQALYQISQLIGSALDISKTLNETLGVLHETLRMERATLVLEECDSGRLTIVAS 68 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 LS + A E ++ + + P + L+ G S Sbjct: 69 YGLSPAEIARG--IYRPEEGVIGRIFASAYPFVVPDVHREPLFLNRTRARTNLPKGEISF 126 Query: 268 LLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 + +P+ + G L + + EE+ + L +A I + + Q+ Sbjct: 127 IGVPVMLAENPVGVLSVDRLFGPEISFEEDIRFLTVVATMIGQFLNLQRTF---ASSQQV 183 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L++EN QL +L +II Q + ++++ + VA S +T L+ GE+GTGKE++AR Sbjct: 184 LREENSQLRRKLQDRFNRYNIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVAR 243 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIHQ PR +P +K+NCAA+P +LLESEL GH+KGAFTGA+ +GRFE+ADGGTLFLD Sbjct: 244 AIHQAGPRAGEPFIKLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLD 303 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG+LPL LQ KLLRVLQER ERLGGSRTI V+VR+IAATNR L VE+ FR+DL+Y Sbjct: 304 EIGELPLALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYY 363 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV P+ LPPLR+R EDIPLL HF ++ RH R + +R+L + WPGNVRE Sbjct: 364 RLNVVPVVLPPLRERREDIPLLLDHFLRESNRHNRRRVK-FAAAVIRRLNEYSWPGNVRE 422 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLL-----------PTLNEDSALRSSMAQLLHPT 615 L+N++ER V++ G +NL S Sbjct: 423 LQNLVERLVIMVDGEVVNLDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAA 482 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 E E++ ++ LR + AA LG+ + R+++ I + Sbjct: 483 GRSLWEMEKEEVLAALRRHGWV---QTRAARDLGITPRQMGYRIRKYAIEIP 531 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 190/559 (33%), Positives = 294/559 (52%), Gaps = 24/559 (4%) Query: 124 ARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHH 183 A + N ++ R++ K+ VL+ ++NA+ + + DL + +++ Sbjct: 4 AYQAGGLSAQDQNRMLLEINERIIRKE-QESAVLLSLSNAIATIRNKYDLFEVIDQKLKT 62 Query: 184 FFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACL-----PRCMPGESVLLTQTLQTRQP 238 F + L + K + A + + L L + P Sbjct: 63 LFDFDEFVICLINEDKKTHSPFLYNQREDFRNAAGIPPASTKRYSLDDGLCEAMLASAHP 122 Query: 239 TLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQ 298 + + + L + G + + + + G L S S + Sbjct: 123 IVFEVEEVMQWPDPPIWLGFWQNKGIREMIGMKIFDRDECSGFFYLYAKKSNAVSNQYYS 182 Query: 299 LLQHIADRIAIAVGNADAWRSMTDL-------QESLQQENHQLSEQLLSNLGIGDIIYQS 351 LL I+ +I++AV N A + + ++ L+ E L EQ+ + +++ QS Sbjct: 183 LLHSISLQISVAVSNIRANEKIEEQLQQINTYKQQLEDEKSYLQEQINTRYHHSEMVGQS 242 Query: 352 QAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASL 411 A+ + ++ VA SDSTVLI GETGTGKE++AR+IH LSPR+DK ++K+NCAA+PA+L Sbjct: 243 SAIRQVFDLIEQVAASDSTVLILGETGTGKELVARSIHNLSPRKDKLMIKVNCAALPANL 302 Query: 412 LESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERL 471 +ESELFGH+KG+FTGA G+FE+A GTLFLDEIG+L ++Q KLLR LQE+EIER+ Sbjct: 303 VESELFGHEKGSFTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIERI 362 Query: 472 GGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKH 531 GG I NVR+IAATNR+L + VE+ FRSDL+YRLNVFP+ +PPLR+R EDI L+ H Sbjct: 363 GGKGVIKTNVRIIAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSAH 422 Query: 532 FTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQ 591 F Q +A+ R + + L+ L + WPGN+RELE++IER++LL+RGN +N + Sbjct: 423 FIQHLAKKTGRQVKGMTKGVLKTLQEYPWPGNIRELEHLIERSILLSRGNIINEVHLPKV 482 Query: 592 SRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMK 651 + + E ER I+ +L+ G ++G GAA L + Sbjct: 483 EHM-----------EDLTSNKEIRIKTIFENERDHILNILKLCKGKISGNGGAAELLSIP 531 Query: 652 RTTLLSRMQRLGISVREVL 670 TTL S++++ I V+ Sbjct: 532 ATTLNSKIKKFNIKKEHVI 550 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 181/559 (32%), Positives = 287/559 (51%), Gaps = 26/559 (4%) Query: 113 TSQDCTLFNWLARIITPVLQSWLNDEEQQVAL---RLLEKDRDHHRVLVDITNAVLSHLD 169 + + +L S+L+D+ + L D++ ++ + + + + Sbjct: 502 SMGQEKKAKGAMQKSAELLDSFLHDQVPDNLRFLLKDLRTDKNLLEEIMKLGQELATIRN 561 Query: 170 LDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLL 229 DL+ + ++ G ++ L + + + + + ++ Sbjct: 562 DRDLVRHILATVNRITGAERGAVFLVNKETGKPAVVLRAARNIMEQDISRPEFQSSMKMV 621 Query: 230 TQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHT-S 288 + T + L + L + S + +P+ F G L + + Sbjct: 622 REAAFTGRARF-------RLTEAPRQSHPLENKVVHSCICVPMKFRETVLGVLYVDNRIF 674 Query: 289 STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDII 348 + E + ++L + + AIA+ NA L L++E L EQ + + Sbjct: 675 PSALKESDIRILDFFSSQAAIALDNARIHEQNRALIRKLEEEKRYLEEQQSEFQPPVEFV 734 Query: 349 YQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIP 408 + A+ +L V +A +DSTVLI GETG GKE+I+ AIH+ S R KP +++NC+ P Sbjct: 735 GECAAVRKVLNDVKKIAATDSTVLILGETGVGKELISTAIHERSSRAGKPFIRVNCSMFP 794 Query: 409 ASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREI 468 L+ SELFGH+KGAFTGA GRFE+ADGGTLFLDEIGD+ E+Q +LLRVLQ +E Sbjct: 795 EGLIASELFGHEKGAFTGADKRRLGRFELADGGTLFLDEIGDISHEVQVRLLRVLQNKEF 854 Query: 469 ERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLL 528 ER+GG T+ + R++AATNRDL + V+ +FR DL+YRLNV L++PPLR+R EDIPLL Sbjct: 855 ERVGGRSTLRSDFRLLAATNRDLREDVKTGKFREDLYYRLNVLSLKIPPLRERKEDIPLL 914 Query: 529 AKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN 588 +F + A+++ + A+ E L +L+++DWPGNVRELENVIER+ +L+ G L + Sbjct: 915 VDYFLDRHAKNLGKPRGAVTPEDLDKLVAYDWPGNVRELENVIERSAILSSGARLEIPDL 974 Query: 589 VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRL 648 + S + L +E ER+ I+ L++T G V GP GAA L Sbjct: 975 FQ---------------SGASFALDREALSLEENERRHILWALKKTGGKVRGPGGAAELL 1019 Query: 649 GMKRTTLLSRMQRLGISVR 667 + TL SR+++LGI + Sbjct: 1020 EINHNTLFSRIKKLGIKRK 1038 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 181/556 (32%), Positives = 276/556 (49%), Gaps = 39/556 (7%) Query: 142 VALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE 201 + R+ + +++ + S +DL+ + DV + + ++ +VL R NE Sbjct: 1 MKDRVTPNHFQELTTIYEVSKVLSSSMDLEHTLNDVLKTLESHLHISPSMIVL---RMNE 57 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 + + S ++ + ++ P + + ++ Sbjct: 58 EIVGVIAATGLSVAEIERGRYRLGEGMIGKIMRAGMPIVIPDVSQEPAFLHRAFEPEISQ 117 Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSS--TLFSEENCQLLQHIADRIAIAVGNADAWRS 319 + + +P+ G G L + + + + +LLQ IA+ + V + Sbjct: 118 R-LHAFVGVPIKVGYECIGVLAIYRSERHKGVSFRSDVRLLQMIANLVGQTVN---LHQG 173 Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 ++ + L QE H+L ++L I ++I S+AM+ + V A +TVL+ GE+GT Sbjct: 174 ISAERNRLLQEKHRLQKELQKRYSIKNVIGNSRAMQAVFADVHQAAPGKATVLLRGESGT 233 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKEVIARAIH LSPRRDK V +NCAA+P S+LESELFGH++GAFTGA +GRFE+AD Sbjct: 234 GKEVIARAIHYLSPRRDKAFVSLNCAALPESILESELFGHERGAFTGATQERKGRFELAD 293 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDEIGD+ Q KLLRVLQERE ER+GG++T VNVR+IAATNR+L + V + Sbjct: 294 GGTLFLDEIGDISPAFQAKLLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSKGE 353 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR+DL+YR+NV + LPPLR+R EDIP L +HF + R + + EAL+ ++S Sbjct: 354 FRADLYYRINVVSIFLPPLRERREDIPALIEHFLARYNAENQRKL-TLTPEALQTMVSCY 412 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNV--------------------------RQSR 593 WPGNVRELEN +ER + RG+ + Sbjct: 413 WPGNVRELENCVERTATMMRGDIIRNLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMS 472 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 + P D + + A ER R++Q + + AA LG Sbjct: 473 VPPHAAPDVEGQVTDASGAGDGEGSLPLSERDRLIQAMDRCGWV---QAKAARLLGTTTR 529 Query: 654 TLLSRMQRLGISVREV 669 L + + GI V+++ Sbjct: 530 KLGYALNKHGIEVKKL 545 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 236/572 (41%), Positives = 323/572 (56%), Gaps = 24/572 (4%) Query: 105 IRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQV------ALRLLEKDRDHHRVLV 158 I + R+ + + +R VL + L D+++Q+ L E+ R +L Sbjct: 228 IASAEGRYEDEGWRIRKDGSRFWANVLITALYDQQRQIIGYSKLTRDLTERRRAEEALLA 287 Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACL 218 +++ +VL L + ++ VA + S+ L D KN S S S + Sbjct: 288 ELSVSVLPGLKIQQMLHAVASSMQRIVAHDYASITLLDQSKNVLHSYILSAAGDS-GPEM 346 Query: 219 PRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHT 278 + ES L T + D Q L S+G +A +PL Sbjct: 347 ELSVAPESSPEAAVLHTHEALFLPSLQDSSFPQD--ALRHALSSGIHAAWWLPLVHEGRV 404 Query: 279 PGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQL 338 GAL + + + L +A +IA+ + +A R ++ + L++E L E+L Sbjct: 405 AGALCIGVRNPKTLEHVSRHTLTQMAAQIALTIQGINAARQLSAQTQKLKEEKRYLEEEL 464 Query: 339 LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKP 398 + +I+ +++ +L+QV+ VA +D+T LI GETGTGKE+IARAIH LS R Sbjct: 465 RTEYSFEEIVGNGESLRRVLKQVETVAPTDATTLILGETGTGKELIARAIHNLSARDGHT 524 Query: 399 LVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPK 458 VK+NC++IP LLESELFGH+KGAFTGAI GR E+A GTLFLDEIGDLPL+LQPK Sbjct: 525 FVKVNCSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLDEIGDLPLDLQPK 584 Query: 459 LLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPL 518 LLR LQE+EIERLGG RTIPV+ R++AAT+RDL +MV+D QFRSDL+YRL VFP+ LPPL Sbjct: 585 LLRALQEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYYRLKVFPILLPPL 644 Query: 519 RDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLT 578 R R EDIP L +F K AR MN+ I+ IP + L+ W WPGN+RELEN +ERAV+LT Sbjct: 645 RQRREDIPELVNYFVAKHARRMNKHIEEIPEPVMSALVRWHWPGNIRELENFLERAVILT 704 Query: 579 RGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 RG L L+ Q + T S + ER I+QVLR+ +G++ Sbjct: 705 RGPLLRAPLSELQELNIETDEPQS---------------TLEAAERAHILQVLRDCDGVI 749 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 AG GAA RLG+KRTTL SRM++LGI RE L Sbjct: 750 AGAGGAAERLGLKRTTLNSRMKKLGIERREYL 781 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 191/621 (30%), Positives = 295/621 (47%), Gaps = 44/621 (7%) Query: 53 LIELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRF 112 L+E L+S Y V A + Y+ + +Y VLL + I + + Sbjct: 872 LLERKNLESAKNYLNEAIKHFVEAGSNYELSLANYELAGVLLDMEEWEQAMEILKNNRKI 931 Query: 113 TSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDD 172 + ++ L ++Q + Q+ E+ + +IT + + DLD Sbjct: 932 IERYGSI--KLLEQNDILMQKISREYSSQMEEVKFEE--NLLNQFYEITQNLNTITDLDV 987 Query: 173 LIADVAREIHHFFGLASVSMVL---GDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLL 229 LI + ++L ++ ++ + + + E Sbjct: 988 LIEQSLSSLVEIANADGGMLLLHPNPSLPDAWEYRIYHNFSPEDKYHDQFQNICYEVYQN 1047 Query: 230 TQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLA-HTS 288 + +QP + L +PL+ +T G +LL + Sbjct: 1048 NKLENIKQPHFAPS--------------------YNNILALPLSIRKNTMGVVLLFCKSG 1087 Query: 289 STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDII 348 S FSE LL ++++I + + N L +L++ ++ + EQL SN +II Sbjct: 1088 SKYFSERIINLLSALSNQIIVIIENI--------LSANLEKSHNIIREQLSSNNIYSNII 1139 Query: 349 YQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIP 408 +S M + + ++ V + +TVL+ G +GTGKE+IARA+H S RR+K V C A+P Sbjct: 1140 GKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALHYSSNRRNKAFVAQYCGALP 1199 Query: 409 ASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREI 468 +LLESELFGH KG+FTGA +G FEIADGGT FLDEI D+ Q KLLR LQE EI Sbjct: 1200 ETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQEGEI 1259 Query: 469 ERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLL 528 +R+G ++T V+VRV+ ATN L + V+ +FR DL+YRLNV +++PPL++R DIPLL Sbjct: 1260 KRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGDIPLL 1319 Query: 529 AKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNS-LNLHL 587 A HF K + MN+ + EA++ L +DWPGNVR+LEN IERAV L N+ + Sbjct: 1320 AIHFLDKYNKRMNKNVMGFTAEAMKVLEQYDWPGNVRQLENEIERAVTLAEPNTFIKPSD 1379 Query: 588 NVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATR 647 + ++ A+ S +E ER+ I Q L + AA Sbjct: 1380 FSEEVYRHIEYSKTIAMLSG----KKNLKDAIEELERKLISQSLEKFQW---NQTQAAKE 1432 Query: 648 LGMKRTTLLSRMQRLGISVRE 668 LG+ R L+ +MQR + E Sbjct: 1433 LGLSRQGLIKKMQRYNLYREE 1453 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 204/587 (34%), Positives = 305/587 (51%), Gaps = 40/587 (6%) Query: 100 AELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVD 159 + R I T SRFT + F L II + + EQ + R + +L Sbjct: 225 GDTRIISTKKSRFTDEAGNHF--LIGIIRDITER--KRAEQALEDRARRSEIKKDAILK- 279 Query: 160 ITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLP 219 A ++ DL + + + L VS+ + NE + Sbjct: 280 --LAGMAQDDLQETFRRITKLAAQTLELERVSIWKFTNSGNEILCEALYIENEGQHRRGD 337 Query: 220 RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTP 279 R + + L+ ++ L A + D L NG +S + + + + Sbjct: 338 RLTRADCPNYFKLLEQQKSVLVPNAQEDP-ATADFGPGYLKPNGIKSLMDVFVYSAHQPY 396 Query: 280 GALLLAHTSSTL--FSEENCQLLQHIADRIAIAVG-----------------NADAWRSM 320 G L H + ++ E+ + +A+ +++ V + A + + Sbjct: 397 GILCFEHVGPGIRSWTAEDLEFASSMANVVSLMVESNERKKAEEQIRQANLELSKANKEL 456 Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 L+ L+QEN L +L +++Y SQA+ +L +V+ VA +++TVL+ GE+GTG Sbjct: 457 DTLRNRLEQENMYLRNELDLAFNYQEMVYSSQAISQVLTEVEQVAATNATVLLQGESGTG 516 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE++ARAIH +SPR KP++K+NCAAIP LLESELFGH KGAFTGA++ G+FE+ADG Sbjct: 517 KELLARAIHNISPRSGKPMIKVNCAAIPGELLESELFGHKKGAFTGAVSNKVGKFELADG 576 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDEIG+LPLE+QPKLLR LQE EIE +GG+ ++VR+IAATNR L + VE F Sbjct: 577 GTLFLDEIGELPLEMQPKLLRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGDF 636 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R DL++R+NVFP+E+PPLR+R EDIP+L +HF K R + I + EA+ QL ++W Sbjct: 637 REDLYFRINVFPIEVPPLRERKEDIPILVEHFMDKFNRKYGKNISFVTEEAMSQLKQYEW 696 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 PGN+RELEN++ERA +++RG +L + + L Sbjct: 697 PGNIRELENLLERATIVSRGETLIIPGF-------------ESQSQKSKMPLRNNNLSLT 743 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 +R I+ VL + + G GAA L M+ +TL RMQ+LGI Sbjct: 744 TVQRNHILHVLDMCDWKITGQGGAAELLDMRPSTLRDRMQKLGIERP 790 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 196/543 (36%), Positives = 287/543 (52%), Gaps = 25/543 (4%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE-IHHFFGLASVSMVLGDHRK 199 ++ L + +L++++N + + +DL ++ + F ++ + + Sbjct: 2 EMFSEQLVQKEKEQAILLELSNRIAAARHREDLWDNLITAQLLELFNSKYYTICMINEDG 61 Query: 200 NEKFSLWCSDLSA-----SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDP 254 S+ S + P E + L+ P + P Sbjct: 62 VTHSPFLHSEESTIKSRTGETPIISDLHPIEDGVFNLVLEADGPVSFELQKLMRGRLVPP 121 Query: 255 LLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNA 314 + + G + + + G G L L FSE + +L I + + I + N Sbjct: 122 YIYRWFNVGVVEMMAVKICNGQQPKGLLYLFTDQRDAFSEVDARLTNAITNILGIGISNI 181 Query: 315 DA-------WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 A + + ++ LQ ENH L EQ DI+ S M+ + + VA S Sbjct: 182 LANETIEKQLQEIERFRQKLQNENHYLQEQQGLQNTFADIVGTSAEMQRRITILSRVAPS 241 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 +STVL+ GETGTGKEV ARAIH SPRRD ++K+NCAA+P L+ESELFGH+KG+FTGA Sbjct: 242 ESTVLLLGETGTGKEVFARAIHAGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTGA 301 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 G+FE+AD TLFLDEIG+LPLE Q KLLRVLQE+EIER+GG +I VNVR++AAT Sbjct: 302 TQRRIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAAT 361 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 NR+L + V +FRSDL+YRL+VFP+ +PPLR+R EDIP LA HF Q+ A + R +I Sbjct: 362 NRNLEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPSI 421 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 +A+ LM ++WPGNVRELE+++ER +LLT + ++ Sbjct: 422 SAKAMEGLMHYEWPGNVRELEHLMERTLLLTTTPVIAKIDLP------------GVPVTA 469 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 D E++ I++VL+ NG +AGP GAA +L + TTL SRM++LGI Sbjct: 470 SKDPDSTFILPLDLMEKEYILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKKLGIKKS 529 Query: 668 EVL 670 + Sbjct: 530 HYV 532 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 180/522 (34%), Positives = 269/522 (51%), Gaps = 27/522 (5%) Query: 149 KDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 + + L I + +L D + V +E++ G+ + L D E + Sbjct: 4 HNYEELAALHAIARTLAQPGELRDQLERVLQEMNQRVGMQRGMISLLDRESGEVWLDVAH 63 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 + PGE + + QT +P + + + L Sbjct: 64 GVD--IQGMEVSYQPGEGIT-GKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFL 120 Query: 269 LIPLTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 +P+ + N G L + + + +L I++ IA +V +L Sbjct: 121 CVPIIYDNRVVGVLSADKAARQVEDLDRELAMLSSISELIAKSVHI-----------RAL 169 Query: 328 QQENHQLSEQLLSNLGIG-DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 ++EN +L L + +II S+ M+++ + VA S++TVLI GETGTGKE++AR Sbjct: 170 EEENRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVAR 229 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH S R PL+++NCAA+P +L+ESELFGH+KGAFTGA++ RGRFE A GGT+FLD Sbjct: 230 AIHDRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLD 289 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 E+G+L Q KLLRV+QE++ + LG SR + V+VR+IAATNR+L + V FR+DL+Y Sbjct: 290 EVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYY 349 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNVFP+ LPPLR+R DI LLA +F K + M +++ I L +S WPGNVRE Sbjct: 350 RLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPGNVRE 409 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 LEN IERAVLL G+S+ ++ R + + +ER Sbjct: 410 LENCIERAVLLATGDSIETLHLPPSLQIR--------SREGEKKESGKFNAMIESQERAM 461 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 IV L+E++G AA LG + + ++Q+ GI R Sbjct: 462 IVDALKESHG---NQSQAARILGTTKRIIQYKIQKFGIDPRR 500 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 191/523 (36%), Positives = 278/523 (53%), Gaps = 19/523 (3%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 + +L I+ + LDL D++ R + F GL ++ + + Sbjct: 31 CRSVQELGLLFSISQTLEKSLDLGDIVRPALRRMQGFIGLERGTISILNRDTGGFLLAEA 90 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD--DLFLWQRDPLLLLLASNGCE 265 L + +L +T+++R P + + +L L Sbjct: 91 IGLP--RGLPPANYLDMIRPILERTVESRDPVVITDLAVWARKQGVEEDVLESLRLADGV 148 Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 + +PL F G L + ++ E + ++L IA +A A A R + + Sbjct: 149 GMVSVPLKFDEEAIGTLSIERANTNFGWESDLRILGMIASIVAQA---ARVRRDAAEQIQ 205 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 SL+ EN +L E++ +II S M + ++ VA S +TVLI GE+GTGKE++A Sbjct: 206 SLRAENERLQEEIAHGFRPENIIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGKELVA 265 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 +A+H+ S RR+KP VK NCAA+P S++ESELFGH+KGAFTGA+ +GRFE A+GGT+FL Sbjct: 266 KALHEKSSRRNKPFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGRFESANGGTIFL 325 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+ L Q KLLRVLQERE ER+G T V+VRVIAAT+R+L +M+E FR DL+ Sbjct: 326 DEIGDISLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEMMEAGTFREDLY 385 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 YRLNVFP+ +PPLR+R DI +LA HF +K A+ M R I + A+ L+S+ W GNVR Sbjct: 386 YRLNVFPIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDMLVSYHWAGNVR 445 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 ELEN IERAVLL +G S+ H + + + + ER+ Sbjct: 446 ELENCIERAVLLAKGQSIKAHHLPPTLQK---------KSRAESSEVATLEDAIQALERE 496 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 IV L+ET + A+ RLG+ R+++ GI V Sbjct: 497 MIVDALKETG---SNLAEASRRLGLTERKAGLRVKKYGIDVSR 536 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 183/519 (35%), Positives = 275/519 (52%), Gaps = 27/519 (5%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + R L +I V +L D + + G+ + + D + E + + Sbjct: 8 EELRTLHEIARVVSRSAELKDQLQQTLDILSSRLGMERGMVSVLDLQTGEAWLDVARGVD 67 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 R PGE + + Q+ +P D L+ + + L +P Sbjct: 68 VERGTI--RYRPGEGIT-GKVAQSGRPMGIANLGDEALFLDRTGARRSLNREELAFLCVP 124 Query: 272 LTFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 + + + G L + + ++ ++L +A+ + V ++++E Sbjct: 125 IFYQGRSVGVLSADKLARRVEDLDKEVEILSAVAELLGKVVHF-----------RAVEEE 173 Query: 331 NHQLSEQL-LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 N +L L + +II +S+ ++++L+ +D VA +++TVLI GETGTGKE++ARAIH Sbjct: 174 NSRLRRMLAEARRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIH 233 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 S R PLV++NCAA+P +LLESELFGH+KGAFTGA+ RGRFE A GGT+FLDE+G Sbjct: 234 DNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVG 293 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +L Q KLLRVLQERE + LG SRT+ V+VRVI A+N+DL + V FRSDL+YRLN Sbjct: 294 ELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLN 353 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VFP+ LPPLR+R DI LLA +F K AR +++ + I T A+ LM + WPGNVRELEN Sbjct: 354 VFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCYHWPGNVRELEN 413 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 IERAVLL GN+++ ++ P ++ + ER I Sbjct: 414 CIERAVLLAGGNAVDSWHLPPTLQMKPVGMQNVS--------RGKLEALVSAFERDLITD 465 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 L++ G AA LG + + ++++ GI R Sbjct: 466 ALKDVRG---NQSQAARLLGTTKRIVQYKVEKYGIDPRR 501 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 180/524 (34%), Positives = 297/524 (56%), Gaps = 15/524 (2%) Query: 147 LEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW 206 +++ + L+++TNA+ S D+D L +A +I + L + + + Sbjct: 1 MQRATLNFETLLEVTNALNSQRDIDSLWRVIADQIRKVIPWDRAGITLYESQTDSFRFYA 60 Query: 207 CSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCES 266 A+ +P E + R+ + ++ D + G Sbjct: 61 VITNMATPALAHDSVIPREGSAVGWVHDNRRLHIREDLQKEQVFLEDRYYV---QEGLGR 117 Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 + +PL +H G L + + +++C+ LQ +A +IA A+ + A+ + L + Sbjct: 118 MINMPLLVRDHCLGTLNIGSVQTGHLDQDDCKFLQQVATQIAYAIDHVLAYEQIQQLSDR 177 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L++EN L+E++ ++ + ++ S + ++ + VA +D+TVL+ GETGTGKEV+A+ Sbjct: 178 LRRENEYLAEEVKASRNLRLVVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQ 237 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 A+H LS R KP +++NCAA+P+ L+ESELFGH++GAFTGA GRFE+A GTLFLD Sbjct: 238 ALHDLSLRCHKPFIRVNCAALPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLD 297 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG++PLE Q KLLRVLQ+ ++R+GG++ + V+VR++AATN DL V FR+DLFY Sbjct: 298 EIGEMPLETQAKLLRVLQDGMVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADLFY 357 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RL++FP+ LPPLRDR EDI LLA+HF + + RA A +++ +L++++WPGNVRE Sbjct: 358 RLHIFPIALPPLRDRREDIHLLAQHFLALIGGKLKRAHLAFDPQSMARLLTYNWPGNVRE 417 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 L+NVIERAV+L+ + + + + + ++ + ER Sbjct: 418 LQNVIERAVILSGSSQVTVDEMLL------------PVVQAVHSPSSSLPVSLGDLERYH 465 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 I++VL +T + G +GAA LG+ TL SR+++LG+ + Sbjct: 466 IIEVLEQTKWRIYGEQGAAHLLGLNPETLRSRLRKLGLRRPSSI 509 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 175/475 (36%), Positives = 255/475 (53%), Gaps = 24/475 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 ++L D +L A + + + DL + Sbjct: 10 ILLVDDDPGVLATLTEVLSDAGYRTHTATDG------AEAVAELDKQFFDVVVTDLNMPG 63 Query: 252 RDPLLLLL-ASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + +L + + LT ++ + + + + D + + Sbjct: 64 MDGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKF-----DELLHS 118 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V A + + L++EN L +QL + + S ++ + + ++ VA +DST Sbjct: 119 VSTAIKF-------KRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDST 171 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IARAIH SPRRD P+V INC AIP LLESELFGH+KGAFTGA T Sbjct: 172 VLITGESGTGKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKT 231 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+A+GGT+FLDEIGD+ LQ KLLRV+QE+ ER+G +RT+ V++R++AATN+D Sbjct: 232 RIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKD 291 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + VE ++FR DL+YRLNV P+E+PPLRDR DIPLL F K+A R + I Sbjct: 292 LMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQA 351 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ LM WPGNVRELENV+ER ++L+ G++++ L + ++ L+ + Sbjct: 352 AMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLK--LPS 409 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 +E E+ IVQ L E N + AA L + RTTL+ +M+R I Sbjct: 410 GGIRFDHAVEEYEKNLIVQALEEANWV---KTQAAKLLHINRTTLVEKMKRKNIR 461 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 163/536 (30%), Positives = 265/536 (49%), Gaps = 26/536 (4%) Query: 154 HRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSAS 213 + +I+ + S + + ++ + ++L D NE F L Sbjct: 11 LNTIYEISVILNSSNMIQHSLYRSLLQMSDTLSMERGLILLHDKDTNELFVEASIGLDND 70 Query: 214 HCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT 273 + ++ + + P L ++ L A S + +P+ Sbjct: 71 EGPVKNMRYKADEGVVGKVFKYGIPILIPDVQKEPMFLNK--LGRNAKKEEISFIAVPIK 128 Query: 274 FGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNAD----AWRSMTDLQESLQ 328 N T G L + S ++S + +L+ IA +A + ++ + ++ Sbjct: 129 HQNQTYGVLAVDKVVSKMYSITTDVDILKMIATLMASFLHKVQFFTSEMEAIQQEKSRIE 188 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 +E +L ++ ++ + M +L +V +V SDS VLI GE+GTGKEV+A+ I Sbjct: 189 EEKLKLIGEVTQKYQYEGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGTGKEVVAKTI 248 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H S RR KP V +NCAAIP L+ESELFG+ KGAFTGA +G+FE ADGGT+FLDEI Sbjct: 249 HYNSNRRKKPFVAVNCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIFLDEI 308 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 GD+P+E Q KLLRVLQ++ +E+LGG++ + V+VR++AATN++L V+ +FR DL+YRL Sbjct: 309 GDMPMEAQSKLLRVLQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDLYYRL 368 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVF + LPPLR R EDIP +A+H + +++ N+ I EA+ LM+ ++PGN+RELE Sbjct: 369 NVFAIFLPPLRKRKEDIPEIAQHILKNLSKRYNKN-YTISPEAVTALMNCNYPGNIRELE 427 Query: 569 NVIERAVLLTRGNSLNLHLNV---------------RQSRLLPTLNEDSALRSSMAQLLH 613 N +ER+ G + + + + Sbjct: 428 NCLERSAFTAGGGEIKTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIPDNDYSEAD 487 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 + +ER+R+VQ L + + AA L M + R+++ I V+++ Sbjct: 488 NELISGNMDERERVVQALEKAGWV---QAKAARMLDMTVRQMNYRIKKFNIKVKKI 540 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 202/600 (33%), Positives = 300/600 (50%), Gaps = 37/600 (6%) Query: 75 TATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSW 134 T+ + +M ++ G L F+ + + N +A + L Sbjct: 410 TSEMMQREQMESACVLPLVAGDRVRGALFFLAAGKESYAALQHAFMNQVASAVAVALDDC 469 Query: 135 L-NDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMV 193 L +E +++ L + + +L++ + F L + + Sbjct: 470 LVQEEMRRLGEELAAQKIARLEQQKEEV-----THELEETSKALDASEERFRDLFDEAPI 524 Query: 194 LGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRD 253 H + + + + + P +P +T P + Sbjct: 525 AYVHEELDSHFIRANRAAIRILGIKPEDVP---HTYGKTFAPDTPD--------AQRRMR 573 Query: 254 PLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGN 313 + S +++ + ++ + + + + I DR+ Sbjct: 574 EAFESIGRGTDTSGVVLEMRRKDNGKPFWIQWWSRPDPSGKYTRTMFLDITDRVL----- 628 Query: 314 ADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 M + L+ +N L E++ S +I+ S ++ +L+QVD VA +DSTVLI Sbjct: 629 ------MEQDKARLEAQNTYLQEEIRSQHNFVEIVGNSPSLLQVLRQVDRVASTDSTVLI 682 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 CGETGTGKE+IARAIH SPRR++PLVK+NC AI L+ESELFGH KGAFTGAI G Sbjct: 683 CGETGTGKELIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKGAFTGAIANREG 742 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 RFE+ADGGT+FLDE+G+LP E Q KLLRVLQE+E E +G ++T+ V+VRVIAATNRDL Sbjct: 743 RFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLET 802 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 MV + +FRSDLFYRLNV PL +PPLR R DIPLL F +K AR + +++ I E + Sbjct: 803 MVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETMA 862 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNLH---------LNVRQSRLLPTLNEDSAL 604 +L + WPGN+REL+NVIERAV+L+ G+ L + + + P A Sbjct: 863 RLCQYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPERAMIDAA 922 Query: 605 RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 L + ++ ERQ I VL++TN + G GAA L ++ +TL SRMQ+LGI Sbjct: 923 EPLSTPLGATSGNALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPSTLRSRMQKLGI 982 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 87/296 (29%), Gaps = 7/296 (2%) Query: 47 PFSPVQLIELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAV-LLGSSGMAELRFI 105 P +P Q + + DV Q Y + + + + Sbjct: 206 PGTPCQRVAAGHVCMTTSGLAAKFPEDV---WLQQIGAESYVGVPMRNASGRTIGHIAVL 262 Query: 106 RTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVL 165 T T +D A L+ D+ + A L + L++IT A+ Sbjct: 263 HTQPMEPTEEDIATLKIFAARGCAELERKQADDRLRQAHAELRRTHIETEALLNITRAIG 322 Query: 166 SHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGE 225 HL D L +A + + L + + + P + Sbjct: 323 HHLQRDVLFGALAECLQTAVPTDCFGIALP-VAGARIQAHILNQKNIRSEGAPPTLHEAK 381 Query: 226 SVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLA 285 ++ R+ + ++ ESA ++PL G+ GAL Sbjct: 382 GSAAEWVMKNRE-WYVAATRREVSERFPKTSEMMQREQMESACVLPLVAGDRVRGALFFL 440 Query: 286 HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN-HQLSEQLLS 340 ++ + +A +A+A+ + M L E L + +L +Q Sbjct: 441 AAGKESYAALQHAFMNQVASAVAVALDDCLVQEEMRRLGEELAAQKIARLEQQKEE 496 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 293/509 (57%), Gaps = 11/509 (2%) Query: 167 HLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE---KFSLWCSDLSASHCACLPRCMP 223 H DL L+ D+++ + +S L + + +F A A P +P Sbjct: 12 HTDLAALLRDLSQALGPHLPRGYLSFALLEPHSHAGKLQFLEPVGGGPAPKSADTPTELP 71 Query: 224 GESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALL 283 T++P D L A G A +PLT GA+ Sbjct: 72 AGESPTAHVWDTQEPLWLDVTADGRFP---VLRTAFAKQGVRCACFVPLTTPRRKLGAMA 128 Query: 284 LAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLG 343 + ++ + +A+AV A + + L E L E++ ++ Sbjct: 129 FTSYLPVSPAPDDINFTLQVGRLVALAVEGALTRQELERANARLAAEKLYLEEEIRADRR 188 Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 + +++ S+ ++++L+QV++VA +DS VL+ GETGTGKE++ARA+H+LS R ++ VK+N Sbjct: 189 MHEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFVKLN 248 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAAIP LLESELFGH+KGAFTGA+ GRFE+ADGGTLFLDE+GD+P ELQPKLLRVL Sbjct: 249 CAAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLLRVL 308 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QE+E ERLG ++T+ VNVR++AAT+R+L ++V + +FRSDL+YRL+VFP+ LP LRDR E Sbjct: 309 QEQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRDRRE 368 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 DIP L +HF A+ + I+ IP EA+ L + WPGNVREL+++IERAV+LT G+ L Sbjct: 369 DIPSLVRHFVALFAQRFGKRIETIPAEAMAALERYAWPGNVRELQHLIERAVILTTGSEL 428 Query: 584 NLHL--NVRQSRLLPTLNEDS---ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 + L + P+ + + + P E ER I + L ++ Sbjct: 429 RVPLGELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALDRCGWVI 488 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGISVR 667 GP GAA +LG+KRTTLLSRM++LG++ Sbjct: 489 GGPNGAAAQLGLKRTTLLSRMKKLGLTRD 517 >UniRef50_A4SC79 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Bacteria RepID=A4SC79_PROVI Length = 704 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 200/594 (33%), Positives = 304/594 (51%), Gaps = 16/594 (2%) Query: 80 YQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEE 139 Y M +L G + L F+ ++ + L + I+ + + L Sbjct: 118 YDAGMRQIVLSPLLSGGEVIGFLNFVSRDEKAWSEAERDLLASVTSPISMAVSNAL---- 173 Query: 140 QQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRK 199 A L + + + + NA+++ D ++ V +I + + + + Sbjct: 174 ---AYDELRQREAETAMQLAVNNALMTIRDRGQMLLAVCEQISKLLPVVYLGIRVFGDDG 230 Query: 200 NEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTH---RADDLFLWQRDPLL 256 + + + ++ + + H + D FL Sbjct: 231 TPRLADNFMHDEEGRFISVSTEERLSHTGDEDAMRESRELIAHPGVYSGDRFLQLARESR 290 Query: 257 LLLASN---GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGN 313 L+ G + + L + L+++ + F E L I ++++A+ N Sbjct: 291 LVAEVQERYGICTIISAQLWDAPGSHAGLIISSSRRP-FEEAELATLNLIIPQLSLALQN 349 Query: 314 ADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 A+ + L++ L+ E L E++ + +II S + +L++V VA +D+TVLI Sbjct: 350 LLAFDEIDTLRQRLEGERTYLKEEIRAVHNFEEIIGTSAPLAAVLRRVSQVAPTDATVLI 409 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 GETGTGKE+ ARAIH LSPR ++ LV++NCAA+PA+L+ESELFGH+KG+FTGA G Sbjct: 410 QGETGTGKELFARAIHTLSPRNERVLVRVNCAALPATLIESELFGHEKGSFTGATGRRIG 469 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 +FE+ADGGT+FLDEIG+LPLELQ K+LRVLQEREIERLGG + IPVNVRVIAA+NRDL + Sbjct: 470 KFELADGGTIFLDEIGELPLELQSKMLRVLQEREIERLGGGKLIPVNVRVIAASNRDLQK 529 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 V +FR+DLF+RLN FP+ LPPLR R DI +LA HF QK AR R I ++ Sbjct: 530 EVAAGRFRADLFFRLNAFPIFLPPLRARTGDISMLALHFAQKFAREFGRPNRPIRERDMQ 589 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH 613 +L W GN+REL + IE+AV+LT G L+ + S + + + Sbjct: 590 ELKERQWKGNIRELAHAIEQAVILTDGPVLDFSTILTPRSRHLAALSPSPAKGIQSMAI- 648 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 E E ER I+ L + G V+G GAA L + TL +R+++LG+ R Sbjct: 649 -FEEEVREMERTLILDALDQAKGRVSGKGGAAELLSIHPKTLYTRIEKLGLRKR 701 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 9/206 (4%) Query: 160 ITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLP 219 I++AV S D +L + ++ F S +V D + + L Sbjct: 16 ISDAVGSVRDPQELFHTLTDKLRLMFKFDSAVIVTIDKDRRYVSVFFEMFLFPIAQGFAN 75 Query: 220 RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRD--PLLLLLASNGCESALLIPLTFGNH 277 L D+L D P+L + G +L PL G Sbjct: 76 EKRLLAGSWFEPFLTKPAVATVSIGDELRRHGNDSYPILKIFYDAGMRQIVLSPLLSGGE 135 Query: 278 TPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQ 337 G L +SE LL + I++AV NA A+ L+Q + + Q Sbjct: 136 VIGFLNFVSRDEKAWSEAERDLLASVTSPISMAVSNALAYDE-------LRQREAETAMQ 188 Query: 338 LLSNLGIGDIIYQSQAMEDLLQQVDI 363 L N + I + Q + + +Q+ Sbjct: 189 LAVNNALMTIRDRGQMLLAVCEQISK 214 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 174/555 (31%), Positives = 280/555 (50%), Gaps = 48/555 (8%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 + D +L +++ + D++ ++ V + + + + + E Sbjct: 6 QNDYGSISLLAEVSRTITHEEDINKVLRLVLFIMSENMHMQRGMITILNRSTGEIVINES 65 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 L+ R GE ++ ++T + + D L+ A Sbjct: 66 FGLTEEERER-GRYHIGEG-VIGHVVKTGKAVIVPSIQDEPLFLDRTGSRAQAKKEELCF 123 Query: 268 LLIPLTFGNHTPGALLLAHTSSTLFSEEN--------------------CQLLQHIADRI 307 + IP+ G+ G L + ++E+ L IA I Sbjct: 124 ICIPIKAGSEIIGTLSADRHVEPVTADEHRRKTRQTDDRDERIDKLQFYVDQLSIIAAMI 183 Query: 308 AIAVG-----------NADAWRSMTDLQESL--QQENHQLSEQLLSN-LGIGDIIYQSQA 353 + AV N ++ S+ + E+ Q++ + +II ++ Sbjct: 184 SQAVRLKQLAYEAGSKNVQDLSNLPPFAASIPPRSEDRQVNAIPPPSPDRPANIIGNTKP 243 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 M L +D +AK+ +T L+ GE+G GKE++A AIH S R +KP +K NCAA+P +++E Sbjct: 244 MVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCAALPENIVE 303 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 SELFGH+KGAFTGA+ T GRFE+A+ GT+FLDE+G+L L +Q KLLR+LQE+E ER+GG Sbjct: 304 SELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGG 363 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 S+TI V+VRVIAATNR+L +++ QFR DLFYRLN+FP+ +PPLR+R DI LLA +F Sbjct: 364 SKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDILLLADYFV 423 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 +K + + + I T A+ LM + WPGNVREL+N IERAV+L+ N ++ + + Sbjct: 424 EKYNKANQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIHGYHLPPTLQ 483 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 SS + D E++ I++ L+ T G ++ AA +LG+ Sbjct: 484 ---------TAESSGTPYTGSLQQKLDAIEKEMIIEALKRTQGNMS---RAAMQLGLSER 531 Query: 654 TLLSRMQRLGISVRE 668 + R+++ I R+ Sbjct: 532 IMGLRIKKFNIDYRK 546 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 176/515 (34%), Positives = 264/515 (51%), Gaps = 30/515 (5%) Query: 149 KDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 R LV+I + + D + ++ V ++L + E F++ Sbjct: 5 PTRTSLDALVEIAQTINTLRDPEAVLEKVLEIAMETLEAERGFILLKAPQHPEGFAI--R 62 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 L + + ++ + L+ +P L + A + + ++L +S Sbjct: 63 SQRNFTDQQLGELVRISTSVVHEVLRRGEPVLVYEAQQDERYGKAESIVLQR---IQSIA 119 Query: 269 LIPLTFGNHTPGALLLAH-TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 +PL GA+ L + F+ +N L+ A + AIA+ NA + ++L Sbjct: 120 CVPLRIKERLIGAIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLY-------QAL 172 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 ++EN +L ++ G +I+ QS AM ++ + V +D+TVLI GE+GTGKE+IARA Sbjct: 173 REENRRLRSEIQRLHGFDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARA 232 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH S R+DKP V + C ++P LLESELFG+ KGAFTGA++ +G FE+ADGGT+FLDE Sbjct: 233 IHYNSERKDKPFVVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDE 292 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 +GDL +Q LLRVLQE EI R+G ++ V+VRVI+ATN+ L ++V+ +FR DL+YR Sbjct: 293 VGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYR 352 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 LN + +PPLR R DIPLLA HF K A I EAL L + WPGNVREL Sbjct: 353 LNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVREL 412 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 EN IERAV+L RG + E E ER+ + Sbjct: 413 ENTIERAVVLARGELITPEDLRLPDTDGADPFEPDLP--------------LKEVERRVV 458 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 ++ L+ G ++ A LG+ R L +++ Sbjct: 459 LRTLKRHGGNIS---ETARVLGVSRRWLHYKLKEW 490 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 172/513 (33%), Positives = 269/513 (52%), Gaps = 25/513 (4%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 + L +++ + S DL + V + + S+ + D + E + Sbjct: 3 RHKNIELKALFEVSRVLTSSFDLAQNLYSVLEILSKELDMRRGSIFIFDKKTEEISIVAA 62 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 L+ + R GE ++ + ++T P + + + S Sbjct: 63 YGLTQEEMSR-GRYRIGEG-IVGKVIETGLPMFIPDIEKEPQFLNKTGSR--PNKKGISF 118 Query: 268 LLIPLTFGNHTPGALLLAHTSSTLF--SEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 L +P+ + G + + +++ ++L +A I + +++ + Sbjct: 119 LCVPIRIEDEILGVISADRIYAEEQGDVDDDLRVLSVVASLIGQFIKLWESY-------K 171 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 ++ EN L QL +++ QS + + +L+ V VA +D+TVL+ GE+GTGKE+IA Sbjct: 172 IMEDENIILRAQLKDRYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIA 231 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 + IH S R P V INCAAIP +LLE+ELFG +KGAFTGA+ G+FE A+GGT+FL Sbjct: 232 KTIHFQSKRAKGPFVAINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTIFL 290 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEI +LPL LQPKLLRVLQER +E LG S+TI V+VR+I+ATN+DL + + FR DLF Sbjct: 291 DEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLF 350 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +RLNV P+ +PPLR+R EDIPLL +++ + +++ +I EAL+ L+S+DWPGNVR Sbjct: 351 WRLNVIPIYIPPLRERKEDIPLLVEYYLKSFCNIYRKSV-SIDEEALKVLVSYDWPGNVR 409 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 EL N IER V++T + + ++ R + L + E +E ER Sbjct: 410 ELANTIERLVVMTESSKIKVYDLPDTVRGVFKLKP-------YSLGDLKLPTEVEELERI 462 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 RI+ L + N + R A LG+ L R Sbjct: 463 RIMDTLPKFNFNI---RKTAQALGLTERQLNYR 492 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 192/582 (32%), Positives = 282/582 (48%), Gaps = 38/582 (6%) Query: 98 GMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVL 157 +R+I + G + + + +++ + L + L Sbjct: 124 PDGSIRWIHSRGGPHSCNGGKSYCVMGASADV--------TQRKQNEQTLLRQLSFESFL 175 Query: 158 VDITNAVLSHL---DLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH 214 + ++ DLD I + F ++ D + Sbjct: 176 AETSSVFAKSTLPSDLDHQIEHALWRLLDHFHGDRCGLIKVDLEGEKTIITHAVYREGLE 235 Query: 215 CACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTF 274 + + L+ + +L + + D + G S L +PL Sbjct: 236 RLPGDVDLVALFPWSFRQLREGRCYCFSDLAELPV-EADRDRASWMAMGIRSGLHVPLRV 294 Query: 275 GNHTPGALLLA-HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT-------DLQES 326 N +++ H+ +E+ LQ I D A+ + L++ Sbjct: 295 ENRVHYLIVVESHSGILAGTEDVLNRLQIIGDLFVNALHRKATEDELRSSCDEIARLKDK 354 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 L+ E L ++ ++ I+ QS+ ++ +L V+ VA + STVL+ GETGTGKE++A+ Sbjct: 355 LELEADYLRSEVRASRFNDQIVGQSEPIQGVLAMVEQVAPTPSTVLVYGETGTGKELVAQ 414 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH SPRRDK +VK+NCA++P+SL+ESELFG ++GA+TGA+ GRFE+ADG +LFLD Sbjct: 415 AIHNHSPRRDKLMVKVNCASLPSSLVESELFGRERGAYTGALTRQMGRFELADGSSLFLD 474 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EI +L LELQ KLLRVLQE E ERLG RTI V+VRVIAATNR+L + V +FR DL+Y Sbjct: 475 EIAELSLELQSKLLRVLQEGEFERLGSPRTIKVDVRVIAATNRNLLEEVRKGRFREDLYY 534 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RL+VFP+ +PPLR+R EDIPLLA F + M + I I + L S+ WPGNVRE Sbjct: 535 RLSVFPIVVPPLRERREDIPLLAWEFVRDFNEKMGKRILRIAKRDMLALQSYSWPGNVRE 594 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 L NVIE AV+++ G+ L + L P + +E ER Sbjct: 595 LRNVIEYAVIVSPGDELKIRLPENIVNAPPQMT------------------TLEEMERHY 636 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 I VLR T + G GAA L + TL SRM++LGI Sbjct: 637 IQDVLRRTEWRIKGEGGAAHILDLNPATLYSRMKKLGILPPR 678 >UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP7_9GAMM Length = 766 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 230/647 (35%), Positives = 336/647 (51%), Gaps = 49/647 (7%) Query: 63 FYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFT--SQDCTLF 120 + Y + A + Y + + + ++ + + S + Sbjct: 130 KFNDYSHLKNFSNAHSIY--------HVPLSAFNRYIGKIEVVNIAPLSASGISDLEQIS 181 Query: 121 NWLARIITPVLQSWLNDE------------------EQQVALRLLEKDRDHHRVLVDITN 162 ++ ++ + LN + LE + H+ VLV++T Sbjct: 182 TVVSLVLAKIFDGNLNHHYGFQDELLGYAKPLSVEENRADVDAALEGNSLHNHVLVEVTE 241 Query: 163 AVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCM 222 AV+ ++ + L + + FG+ +S++ + + Sbjct: 242 AVIGQVNFEGLATVLFLHLQEHFGIEFISIMSFSSDSESLSCHEVNQGKEGKAQYIESQK 301 Query: 223 PGESVLLTQTLQTRQPTLTHRAD-DLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGA 281 P + +Q+++ R+D L + + S+ S + PL F G Sbjct: 302 PKAKTMEEHVIQSKKTLQLSRSDYPLLKHKFLHVDDHYMSHKLSSECVFPLLFRQQVLGV 361 Query: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSN 341 + H + FSEE LL+ IA RI++A+ + +S ++ + + S Sbjct: 362 IKYGHRAEKYFSEERLDLLKQIAARISVAINYFQNSSKF--MMKSTPKDLMSVDKTEQSK 419 Query: 342 LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 G II QS+AM ++ Q+V +VA DSTVLI GETGTGKE+IA IH S R K +VK Sbjct: 420 AMFGGIISQSKAMREVFQRVLMVADCDSTVLILGETGTGKEMIANMIHNASNRSHKKMVK 479 Query: 402 INCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 +NC+A+P+ L ES+LFGH KGAFTGA+N GRFE A + FLDEIGD+PL+LQPK+LR Sbjct: 480 MNCSAVPSGLFESDLFGHVKGAFTGAVNQQVGRFEEAHKSSFFLDEIGDMPLQLQPKVLR 539 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 LQE EIER+G IPV+VR+IAAT+ DL MV+D FR DL+YRLNVFP+ +PPLR+R Sbjct: 540 ALQEGEIERVGKHTIIPVDVRMIAATHCDLLSMVKDNSFRRDLYYRLNVFPIRIPPLRER 599 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 EDIPLLAKHFTQ ++ MNR I +I E LR L S WPGNVREL+NVIERAV++ +G Sbjct: 600 REDIPLLAKHFTQLFSKKMNRDIQSISPETLRILYSLPWPGNVRELKNVIERAVIMNKGQ 659 Query: 582 SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND------------------EEE 623 L+L ++ + ++ + D E Sbjct: 660 VLHLPMSELKEYFPDIDPSPLCVQDGTKKEAGCFPDTVDLYGENTIPKNVSAVKSVKSME 719 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 R++I++VL+ETNGIVAGP+GAA RLG+KRTTLLSRMQRLGI+ +++ Sbjct: 720 REQIIKVLKETNGIVAGPKGAAHRLGLKRTTLLSRMQRLGITSNDLI 766 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 188/564 (33%), Positives = 298/564 (52%), Gaps = 32/564 (5%) Query: 111 RFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDL 170 + + + I + + + +E+ + + + +++ ++ + Sbjct: 156 SIDEINIPILQGICSQIAIAMGNIMANED-------IFRRQAEQELMLGFSSDITGVKTK 208 Query: 171 DDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLT 230 DL ++ + F + L D + + Sbjct: 209 SDLEIVTSKTLERLFNTRISVLYLLDTDQVTLRPYLYDRQFFQETEVAENEAFYSLNINE 268 Query: 231 Q----TLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAH 286 + ++ QP L D+ + L + +G L G G + + Sbjct: 269 EHVKLVFESSQPVLL-DIDENLEAKCLKLSIQRELSGFNRVYASALRLGEQKLGMVWMLG 327 Query: 287 TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGD 346 + + +LQ I +I+ AV N A + LQ+ L+ ENH L +QL + + Sbjct: 328 ------DQVSGPILQGICAQISTAVSNVLANEQILRLQKQLEDENHYLKQQLNKD--FEE 379 Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 I+ +AM+ + + + +VA+S++TVL+ GETGTGKE+IA+A+H S R+DK ++K+NCAA Sbjct: 380 IVGGGEAMQQVYRLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLMIKVNCAA 439 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 +PASL+ESELFGH++GAFTGA+ G+FE+A+ TLFLDE+G++P+E Q KLLRVLQE+ Sbjct: 440 MPASLIESELFGHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEK 499 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 E+ER+GG TI +NVR+IAATNRDL V+ +FRSDL+YRLNVFP+ LPPLRDR EDI Sbjct: 500 EMERVGGKTTIKLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIE 559 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LA F K ++ + + + ALRQL ++ WPGNVRELE++IER+V+L + Sbjct: 560 SLAGFFLAKFSKSIGKKTVKLSANALRQLQAYLWPGNVRELEHLIERSVILATDPMIREF 619 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 + A ++ + + ++ ER I+QVLR G ++G GAA Sbjct: 620 FLPQ------------ATGATTDEHTMQSDLTLEQVERMHIIQVLRRCGGKISGIGGAAE 667 Query: 647 RLGMKRTTLLSRMQRLGISVREVL 670 LG+ T+ S+M++LGI+ E Sbjct: 668 ILGIPGNTIHSKMRKLGITKAEYF 691 >UniRef50_B8FLD5 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FLD5_DESAA Length = 1035 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 178/578 (30%), Positives = 292/578 (50%), Gaps = 27/578 (4%) Query: 92 VLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDR 151 + L S + R++R G L +++ + + + + D+ + + R + Sbjct: 482 MSLIRSRLETARYLRKIGDPGAGD--KLTTQVSQSLASMDEKLVPDDLRHMVSRD-GNSK 538 Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGD-HRKNEKFSLWCSDL 210 R ++++ ++ D +L+ + + G ++ + + ++ + Sbjct: 539 KLLREILELGQELVKIRDYHELVQRIISTGNRVTGAERGAIFMSEKGNSGKEELRLKASR 598 Query: 211 SASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 + + ++ + + + + + +S + + Sbjct: 599 NLTSDHVANPSFVSSMKMIEMVAASGRGLIAGV-------ESTDTEGYSSEGAIQSKICV 651 Query: 271 PLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 PL + G L + ++ F EE+ +L + + AIA+ NA A+ + L + Sbjct: 652 PLCLHDQVVGVLYHDNRLLASAFREEDLDVLSYFSALAAIALDNARAYDQIRRWNIKLSR 711 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 E E LS L +I+ S A+ ++L +++ VA +++TVLI GETG GKE++ARAI Sbjct: 712 EKQYYEEAHLSYLQFDEIVGHSPAINEVLSKIEQVANTETTVLITGETGVGKELVARAIQ 771 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 + S R +P + + +A+P L+ SEL GH+KGAFTGA + GR E+ADGGTLFLDEIG Sbjct: 772 KHSSRAQQPFIGVQLSALPKDLMASELLGHEKGAFTGATHRQAGRLELADGGTLFLDEIG 831 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 D+ ++Q +LLRVLQ R+ ER+GG +T+ + R+IAATNR+L +V D +FR+DL+YRLN Sbjct: 832 DISHDIQIRLLRVLQTRQFERVGGMKTLSSDFRLIAATNRELESLVRDGRFRADLYYRLN 891 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 VFP+ +PPLRDR EDIPLLA HF + A +N+ + I + L +DWPGNVREL+N Sbjct: 892 VFPIYVPPLRDRREDIPLLAMHFLKLHAAKLNKQVMRISDREMDMLKEYDWPGNVRELKN 951 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 V+ER V+L+ + L T E ER I++ Sbjct: 952 VVERGVILSTNRDFRMPEL---------------QSGDCPPLTVGDTATLAENERSHILR 996 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 +L+ T VAG GAA L + +TL RM +LGI Sbjct: 997 ILKRTGWKVAGASGAAKILDIPPSTLSFRMNKLGIKRP 1034 >UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing protein n=4 Tax=Proteobacteria RepID=A8ZZQ7_DESOH Length = 684 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 185/572 (32%), Positives = 298/572 (52%), Gaps = 22/572 (3%) Query: 100 AELRFIRTHGSRFTSQDCTLFNWLARIITPVLQS-WLNDEEQQVALRLLEKDRDHHRVLV 158 + + +R+T L + L + + V+ + L++E + +L E +D + Sbjct: 129 GAIMIMTDRKNRYTEAHGRLLSGLKKPLQRVMDALILDNETRSPHPKLKEPVKDKNEFFR 188 Query: 159 DITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACL 218 +T + HLDL ++ + + F ++ + + + L S Sbjct: 189 QVTRRLCGHLDLQAGVSQCLQYLSRFMPADALFVRQREPEFQSERVLAESYGFFHQQTGT 248 Query: 219 PRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE-SALLIPLTFGNH 277 +P + +T + +R +D L L + G E + +PL Sbjct: 249 LIPLPIPADTR----RTPGIRIINRPED-----SSALKLYMPIFGSEICCISMPLIHKER 299 Query: 278 TPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQ 337 GA ++ ++EE+ QL + D +A+ N R + L+ +++E L+E+ Sbjct: 300 PIGAAVVGLEGRARYTEEHMQLFALLHDPFVLALSNNIRHREVIRLKNLVEEEKKDLAEE 359 Query: 338 LLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDK 397 L II S +E +++ +VA DS VL+ GETG GKE+IA IH S R+D Sbjct: 360 LHCTAP-DTIIGGSLGLEKVMENARLVAGQDSPVLLTGETGVGKEMIANFIHWQSSRKDG 418 Query: 398 PLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQP 457 PL+K+NC AIP +L++SELFGH+KGAFTGA GRFE A+GGT+FLDEI +LPL Q Sbjct: 419 PLIKVNCGAIPDTLVDSELFGHEKGAFTGATRQKLGRFERANGGTIFLDEIAELPLPAQV 478 Query: 458 KLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPP 517 ++LRVL + IER+GG+ +IPV++R+IAAT+R+L + V+ +FR DL++RLNVFP+ +PP Sbjct: 479 RMLRVLHNKIIERVGGTESIPVDIRIIAATHRNLEERVKAGRFREDLWFRLNVFPIRIPP 538 Query: 518 LRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 LR R D+P L+ HF +K +R + + +A+ +L ++ WPGNVRELENVIER ++ Sbjct: 539 LRSRTMDVPALSDHFIEKKSRELKIHPTPPLSPDAMARLTAYSWPGNVRELENVIERELI 598 Query: 577 LTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 L G L + + + D+ + + +VL +NG Sbjct: 599 LNTGGPLTFQNL---------SPTPTHEEPAGHDMKTEDILSLDDLFVRHVKKVLVLSNG 649 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + GP GAA + +K TL +RM++LGI+ Sbjct: 650 KINGPGGAAEMMKIKPNTLRNRMKKLGIAYGR 681 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 174/582 (29%), Positives = 289/582 (49%), Gaps = 42/582 (7%) Query: 84 MVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVA 143 ++ + E+ + +F Q L+ + + Sbjct: 184 LISRITRPLAALVKAAGEVEPGKKMDVQFNVQGQKEIQALSDAFRRMTSRIQEYTTRLEE 243 Query: 144 L-RLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEK 202 LE + ++ V + D+D++ + R I S +++ ++ Sbjct: 244 QAEALEHAHRRMQTTCEVARNVSALSDMDEIGGYLMRRIKKIIHCPSNLILVFGPDRDVL 303 Query: 203 FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 F + + P + + LQ Q D +++ PL Sbjct: 304 FVI-------TEKGTYPVSDRQTAQSIDAALQNLQGV---ETIDGRVFESLPLPEGFVLG 353 Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 + +++PL + + GA+L + +S ++ +L+ + + + A + Sbjct: 354 EKQ--VVVPLYYEDILCGAMLASCSSKCKCDSDSMELISLVLSHASGTIRRAILHQE--- 408 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 E +L + + + G +I + M+ + + + VA +D TVLI GE+GTGKE Sbjct: 409 -------EIKKLKQGVSESAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKE 461 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 ++A+AIH S RRD P V INC+A PA+LLESELFGH+KGAFTGAI GRFE A GGT Sbjct: 462 LVAKAIHARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGT 521 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEI ++ L Q KLLRVLQ ++ ERLGG ++I V+VR++AATN+DL + V+ +FR Sbjct: 522 VFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFRE 581 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRL+V P+ LPPLR+R D LLA+HF ++ A ++ I+ I + A+R L+ + WPG Sbjct: 582 DLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMRALLDYSWPG 641 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 NVRELENV+E+AV+L +G ++ L + + +++ Sbjct: 642 NVRELENVMEQAVVLCKGETIALEDLPDKLQ----------------GARPARRKTIEDQ 685 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E+ +++ L + AA RLG+ R+TL +++++ GI Sbjct: 686 EKNLLLETLEACGW---NKKMAAERLGIGRSTLYAKLKKHGI 724 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 208/540 (38%), Positives = 300/540 (55%), Gaps = 28/540 (5%) Query: 142 VALRLLEKDRDHHRVLVDITNAVLS--HLDLDDLIADVAREIHHFFGLASVSMVLGDHRK 199 LE+ +L +I++ + ++D I + + F G ++ Sbjct: 29 PNSSTLEERLRFEMLLSEISSVYSNLPVEEVDKTIESGLQRLGEFLGADR-CNLVQFSED 87 Query: 200 NEKFSLWCSDLSASHCACLPRCMPGES--VLLTQTLQTRQPTLTHRADDLFLWQRDPLLL 257 + ++ S + P + + + DDL + Sbjct: 88 GSRVLVFHSWIHDDAKPDPGFIAPDHNLFPWFAKMFHLGKVVQFSHLDDLPAEAATDITA 147 Query: 258 LLASNGCESALLIPLTFGNHTPGALLLAHTSSTL-FSEENCQLLQHIADRIAIAV----- 311 LLA +S + +P++ G H G L LA S + +E L+ + + A A+ Sbjct: 148 LLALR-IKSQVSVPISVGGHVFGTLSLATVRSYRSWPDELVPRLRLVGEIFANALVRKQK 206 Query: 312 --GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 A++ + +L E L + L E++ N + II QS ++ +L ++ +A +D+ Sbjct: 207 ELQIRKAFQQIKELNEELAADCTYLREEIDLNYDVHHIIGQSLPLKRVLAKIQQIALTDT 266 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GETGTGKE++ARAIH S RRD+P+VK+NCA++PA+L+ESELFGH+KGAFT A Sbjct: 267 TVLILGETGTGKELVARAIHAASQRRDRPMVKVNCASLPANLIESELFGHEKGAFTSAQV 326 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 GRFE AD TLFLDEIG+LPLE Q KLLRVLQE E ERLG SRT+ V+VR++AATNR Sbjct: 327 RQIGRFEFADRNTLFLDEIGELPLESQAKLLRVLQEGEFERLGSSRTLKVDVRIVAATNR 386 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL + V +FR DL+YRLN+FP+ +PPLR+R EDIPLL F K R + ++I IP Sbjct: 387 DLEEEVRKGRFRQDLWYRLNIFPITVPPLRERTEDIPLLINLFVNKFGRKLGKSIRRIPA 446 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 ++ L ++DWPGNVRELENVIERA + T G SL L N++ S + Sbjct: 447 GVMKSLQAYDWPGNVRELENVIERAAINTVGPSLQLLDNLKSSLVTEKTAAP-------- 498 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 +E ER I+QVL +TNG + GP+GAA LG+ +TL +RM++LGI +R + Sbjct: 499 ------RLTLEEAERSHILQVLADTNGRIEGPKGAALILGINHSTLRARMRKLGIHIRRI 552 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 191/591 (32%), Positives = 292/591 (49%), Gaps = 51/591 (8%) Query: 83 EMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEE--Q 140 + + + + + + L + + + + LA ++ ++ S L + Sbjct: 118 QYKYHCYIPLEINNMILGTLE-LHNDDKHLSQEGMSFCCTLADLLAELVDSKLPALQMPA 176 Query: 141 QVALRLLEKDR--DHHRVLVDITNAVLSHLDLDDLIADVAREIHHF-FGLASVSMVLGDH 197 + +E+DR H+ L+ ++NA+L D L V R++ F F + + DH Sbjct: 177 HLVTDNVEEDRGVPHYAALIALSNALLLVSDEVQLEEVVGRQLLQFSFIADHLLIYPVDH 236 Query: 198 RKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLL 257 E + + P + D + +L Sbjct: 237 -------------------------IAEHAVFDNVISAGVPVIIPARDMRSVP----VLS 267 Query: 258 LLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAW 317 + ++ + + LL + S +L+ IA ++ +A+ N Sbjct: 268 EWLVEAHDDVVVGTAMYQDTALLGLLYLRLKNKEQSAPLLELIGAIAAQLTLALNNLRYR 327 Query: 318 RSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 + + L+ Q +I+ S M+++ + VA S +TVLI GET Sbjct: 328 QELAAGTAF-----FPLTAQDRLEYAFPEIVGGSPQMQEVFNLMGQVAPSTATVLILGET 382 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 G GKE+IA AIHQ S R ++ +V+INCAAIPA+L+ESELFGH+KG+FTGA + G+FE+ Sbjct: 383 GVGKELIAGAIHQASDRAERQMVRINCAAIPANLIESELFGHEKGSFTGATDRRTGKFEL 442 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 AD T+FLDEIG+L L+LQ KLLRVLQE+E ER+GGS TI V+VRVIAATNR+L VE Sbjct: 443 ADQSTIFLDEIGELSLDLQVKLLRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEA 502 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FR DL+YRLNVFP+ LP LRDR DIPLLA F ++ + I + + +M Sbjct: 503 GRFRMDLYYRLNVFPISLPSLRDRRADIPLLANFFLERYKMKSGKKISGFSQKVMSAMMK 562 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTP 617 + WPGN+RELE++IER V+LT G + +++ T Sbjct: 563 YRWPGNIRELEHLIERQVILTEGTLIRDLDIPAAHQVMATDGSG-----------QTEIK 611 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + ER I VLR NG ++G GAA LG+ TTL S++++LG+S + Sbjct: 612 TIAQNERDHIFSVLRLCNGKISGKNGAAKLLGVPATTLNSKIKKLGLSRQH 662 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 173/514 (33%), Positives = 269/514 (52%), Gaps = 19/514 (3%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSA 212 VL +I+ + LDLD + + + + + + + L++ Sbjct: 10 KLNVLHEISKVIEKALDLDKALEAILKILADSLSMKRGAFSFIEEDSGLLVISASHGLTS 69 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 E V + T +P + L+ + S +P+ Sbjct: 70 QE-KNRGVYRMDEGVT-GRIFSTGKPFIVPDIAKEPLFLDKTGSRSMEKERI-SFAGVPV 126 Query: 273 TFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 T T G L + S EE+ QLL +A +A V R + D +E+L++EN Sbjct: 127 TLQGTTVGVLTVDRLFDQDISLEEDIQLLSIVAAMVAQFVS---LNRQVKDREENLRREN 183 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 L +L S+ I+ +S +M + Q ++ VA + +TVL+ GE+GTGK +IA IH+L Sbjct: 184 QNLKTRLSSSFQRFFIVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGIIHEL 243 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S R P +K+NCA++P +LLESELFG++KGAFTGA + GRFE A GT+FLDEIG++ Sbjct: 244 SERGKFPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEIGEM 303 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 P LQ KLLR LQERE ERLGG +T V+VRVIAATN++L + V++ +FR DL+YRLNVF Sbjct: 304 PAGLQAKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRLNVF 363 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ +P LR+R EDIP L HF KMAR R + + +L L+ ++WPGN+RE+EN++ Sbjct: 364 PIWVPSLRERREDIPSLINHFLDKMAREYGRRLV-LSNSSLDYLVEYEWPGNIREMENLM 422 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 E+ +++ G + L + ++ LL + E++ I+ L Sbjct: 423 EKLSIMSEGQIVALKDLPSDMQQEKVCPGKVQEQARDHSLL--------DMEKKEILSAL 474 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + + I AA LG+ + + R+++ + Sbjct: 475 QRNSWI---QSRAARELGLTQRQMGYRIKKFNLE 505 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 199/514 (38%), Positives = 291/514 (56%), Gaps = 13/514 (2%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + ++T + S L++ + + FF L +S+ + D + + Sbjct: 3 NRDEFFREVTVRICSSLEIKTALRSAFTYLREFFPLDMLSLGICDASLSAIRRVAHVTAD 62 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 ++ +PG+ Q + R P + + P L L ++G +L+P Sbjct: 63 STETHDEIIPVPGQLWASLQRWEMRSPVMVDSDQSGLVRALAPHLKLDENSG----ILLP 118 Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 L G G L L + F + LL +AD IA+ NA A + +++L +N Sbjct: 119 LWSGEGMLGWLTLYAWGAGRFDAGHVALLATVADPFVIALANALAHEKLLRYRDNLIDDN 178 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 LS++L + G +I+ + + +++ V VA ++TVL+ GETGTGKE+IA AIH Sbjct: 179 RFLSKELFTQGG-DEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANAIHSA 237 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 SPR+D PL+K+NC AIP L++SELFGH+KGAFTGA+ RGRFE ADGGT+FLDEIG+L Sbjct: 238 SPRKDGPLIKVNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDEIGEL 297 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 PL+ Q +LLRVLQ EI+R+GGSR IPV++RVIAAT+R+L M+ + +FR DL++RLNVF Sbjct: 298 PLQAQVRLLRVLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFRLNVF 357 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELENV 570 PL +PPLR R EDIP L +HF + R + A+ I AL +LM + WPGNVRELEN+ Sbjct: 358 PLFIPPLRQRREDIPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAWPGNVRELENL 417 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 +ER ++L RG +L + +R + A E D+ + + +V Sbjct: 418 VERELILHRGGTLQFDALMPAARRGNAPVQREAPGVE-------EGLELDQAISRHLRRV 470 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 L T G + G GAA LG+K +TL R+ RLGI Sbjct: 471 LDLTGGRIHGRGGAAELLGVKPSTLRWRLDRLGI 504 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 177/557 (31%), Positives = 279/557 (50%), Gaps = 40/557 (7%) Query: 142 VALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE 201 ++ L+ + V+ ++ + S + + + + G S + + + + Sbjct: 1 MSHSLINESPPDFDVVTEVLKTLDSSRNAEHALKRSLWFLSRARGWRSAFIAV-EQPDGK 59 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 L + LS + P ++ + ++ + D ++ + +++ Sbjct: 60 LGGLCSTGLSDGWREGM--RFPSGEGIVGRIQESESAVVVPELDGDPMFDDRTGAVRVSN 117 Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSST--LFSEENCQLLQHIADRIAIAVGNADAWRS 319 + L P+ G L+ + ++ QLL+ +A IA A+ R Sbjct: 118 AERVALLGAPIRHEGRPLGVLVALCENPDGKRVFADDLQLLEVVASPIARAL---LLDRE 174 Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 ++S+Q+E + + I +S +M+ + QV VA + +TVL+ GE+GT Sbjct: 175 ADPSRKSVQEEISRRRNAAAPIYQVDWAIGRSASMQHVFAQVHQVAPARTTVLLRGESGT 234 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE+IARAI++LSPR+D+P V +NCAA+ +LLESELFGH+KGAFTGA +GRFE+A Sbjct: 235 GKELIARAIYRLSPRKDQPFVSVNCAALTETLLESELFGHEKGAFTGAQTQRKGRFELAH 294 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDEIGD+ Q KLLRVLQERE ER+GG+ + V+VR+I ATNR+L QMV + + Sbjct: 295 GGTLFLDEIGDISPSFQAKLLRVLQEREFERVGGTTPVRVDVRLIVATNRNLEQMVREGE 354 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR+DL+YR+NV + LPPLR+R EDIP +A++F + R RA+ EALR L S Sbjct: 355 FRADLYYRINVVSIVLPPLRERREDIPEMAQYFLNRFNRENGRAL-HFNEEALRVLSSCY 413 Query: 560 WPGNVRELENVIERAVLLTRGNSLN---------------LHLNVRQSRLLPTLNED--- 601 WPGNVRELEN IER + +++ LH R+ + P D Sbjct: 414 WPGNVRELENCIERTATMAHHDTIGRSSFLCEIDQCLTKVLHHLEREDAVRPARPSDVTV 473 Query: 602 ----------SALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMK 651 A L + E+ER+R++ + + AA LG+ Sbjct: 474 SNALNVPAKFGAPERDAGGLGMHSGEHIPEDERERLLWAMERCGWV---QAKAARLLGIT 530 Query: 652 RTTLLSRMQRLGISVRE 668 + +++ GI +R Sbjct: 531 ARQIGYALRKHGIKLRR 547 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 187/531 (35%), Positives = 272/531 (51%), Gaps = 29/531 (5%) Query: 143 ALRLLEKDRDHHRVLVDITNAVLSHL-DLDDLIADVAREIHHFFGLASVSMVLGDHRKNE 201 R L DI+ A+ + ++ + + F L Sbjct: 7 TPSNRCTRYQELRALYDISLALGGSVGEVKKAFEEALGLLKRHFFLDKSVYYELSEESQT 66 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 + LS L GE + R+P + L+ + Sbjct: 67 LNVFASAGLSK-EQEFLASYKVGEGAT-GLAAKAREPIIVENIHQNLLFLNK---SGSRN 121 Query: 262 NGCESALLIPLTFGNHTPGAL--LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRS 319 G S L +P G L L S + F E +L A +A A +S Sbjct: 122 EGEISYLAVPALSQERILGVLGVSLTKHSMSDFDEM-VTILTIAASLMAQA---RRIHQS 177 Query: 320 MTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGT 379 + + ++ + +E E+LL +II S ++ + + + +A S +TVLI GETGT Sbjct: 178 IHEEKKRISEEKLYYKEELLKQ---SEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGT 234 Query: 380 GKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIAD 439 GKE+IA+AIH SPR++KP +K+NCAAIP +LLESELFGH+KGAFT A T +GRFE+AD Sbjct: 235 GKELIAKAIHNYSPRKEKPYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELAD 294 Query: 440 GGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499 GGTLFLDE+GDL L LQ K+LR+LQE+E ER+GGS+TI V+VR++AATNRDL +MV Sbjct: 295 GGTLFLDEVGDLSLPLQAKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGD 354 Query: 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWD 559 FR DLFYRLNV P+ PPLRDR +D+ LL+++F ++ + + + + +A L +D Sbjct: 355 FREDLFYRLNVIPIFSPPLRDRGDDVILLSRYFLERFCKRHAKEL-HLTPKAEELLKHYD 413 Query: 560 WPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN 619 WPGN+RELEN IER VLL S++ + + R T + Sbjct: 414 WPGNIRELENSIERLVLLAPSESIDEEVVLSVL----------PGRVHGYTKEVKTRADL 463 Query: 620 DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 +E ER I++ L+E +GI AA +LG+ + ++Q+ I + L Sbjct: 464 EELERSAIIKALKECHGI---KLQAAKKLGITNRQIGYKIQKYEIEPEDYL 511 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 187/547 (34%), Positives = 269/547 (49%), Gaps = 37/547 (6%) Query: 125 RIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHF 184 + PV S N EQQ +L ++ + DL + + + Sbjct: 2 QQTDPVHDSVKNHHEQQ------------LSLLYELAQIMNFTTDLTQALDKALKLMARQ 49 Query: 185 FGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRA 244 + ++ L E + L + R + GE + + +++ +P Sbjct: 50 LHMMRGAITLISPHTGEIRTEAGYGLKPAELRR-GRYVRGEGIT-GRVIESGRPMYISNV 107 Query: 245 DDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHI 303 + L+ L+ G S + +P+ + GAL + H E+ +LL + Sbjct: 108 SEEPLFLNRTRSRDLSKEGI-SFICVPIRLNDQVVGALSVDHLLVDEATLEDEMRLLTIV 166 Query: 304 ADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDI 363 + + A +L+ + ++ E+ S L + S+ M+ + Q+ Sbjct: 167 STLLGHA---------------ALETQ-GRMDEETSSPLRPRGFVGNSEGMQKVYAQIAQ 210 Query: 364 VAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGA 423 VA S +TV + GE+GTGKE+ ARAIH S R KP + +NCAA+P +L+ESELFGH++GA Sbjct: 211 VAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFISLNCAALPENLIESELFGHERGA 270 Query: 424 FTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRV 483 FTGA T +GRFE+A GGTLFLDE+G+L L Q KLLRVLQER ERLGG T V+VR Sbjct: 271 FTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRVLQERAFERLGGMETHYVDVRF 330 Query: 484 IAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA 543 I ATNR+L MV FR DLFYRLNVFP+ LPPLR RPEDI LA HF +K A+ R Sbjct: 331 ITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRPEDILPLANHFIRKFAQANGRE 390 Query: 544 IDAIPTEALRQLMSWDWPGNVRELENVIERAVLL--TRGNSLNLHLNVRQSRLLPTLNED 601 + + L + WPGN+RELENV+ERAVLL G L HL Sbjct: 391 NVRLSLSVMDMLQRYAWPGNIRELENVMERAVLLLGREGLVLPQHLPPALHGAHCAGISG 450 Query: 602 SALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 + ++ + DE ER IV+ L + G + AA LG+ + RM++ Sbjct: 451 ESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMG---KAAASLGLTERIMALRMKK 507 Query: 662 LGISVRE 668 I+ +E Sbjct: 508 YEINYKE 514 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 169/538 (31%), Positives = 267/538 (49%), Gaps = 29/538 (5%) Query: 149 KDRDHHRVLVDITNAVLSHLDL-DDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 K + +I+ + S L + + ++ L + + + + Sbjct: 2 KKNGEFVAIYEISKILTSSQPLLFQSFRESLKILNIHLKLQKSLIFIRKGQDPILLAGCG 61 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 +D + +H + + Q L+ P + + D + S Sbjct: 62 NDQADNHFSFY-------YFFIEQVLKNGFPIVVPDIHKEPYFSSDISHEEDGTEEPISL 114 Query: 268 LLIPLTFGNHTPGALLLAHTSSTLFSE--ENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 +P+ + G L+ + E L + + + + Sbjct: 115 FCLPIRYERECIGVLVCEKKRESALEPLSETTLTLSLATNLFGQKIKLSMDNFKPIPFPQ 174 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 SL+ + G +I QS+ M+ ++ V VA S STVL+ GE+GTGKEVIA Sbjct: 175 SLELPPPPRKNGDIQLKNNGGVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIA 234 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 R IH LSPR++ P +K+NC+A+P ++LESELFGH+KGAFTGA+ +GRFE+A GGTLFL Sbjct: 235 RTIHYLSPRKEGPFIKVNCSALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFL 294 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DEIGD+ +Q KLLRVLQERE ER+GG++TI V+VRVI ATN++L + V +FR+DL+ Sbjct: 295 DEIGDISPAVQVKLLRVLQEREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLY 354 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +R+NV + LPPLR+R EDIPLLA H K+ + +NR + I EAL+ L++ WPGNVR Sbjct: 355 FRINVVSISLPPLRERKEDIPLLADHILNKIGKELNRKL-RITPEALKLLINCHWPGNVR 413 Query: 566 ELENVIERAVLLTRGNSLNLHLNV---------------RQSRLLPTLNEDSALRSSMAQ 610 ELEN +ERA +R N ++ Q P ++ + A Sbjct: 414 ELENCLERAATNSRNNWIDEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETP 473 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 +P ++ +++I+Q + + + AA L + L +++ GI +++ Sbjct: 474 RSSFFSPLISDDPKEKIIQAMEKCGWV---QAKAARLLNITPRQLGYALKKYGIEIKK 528 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 191/568 (33%), Positives = 298/568 (52%), Gaps = 23/568 (4%) Query: 110 SRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLD 169 +R T L ++ + Q L++++ + L I + + + Sbjct: 94 ARATRPYGFLVKPFREKDLLIMLDIARYKHQNNLQMALQREQLMQKQLQQI---IEAPFE 150 Query: 170 LDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLP-RCMPGESVL 228 L D IA + + F + + + R + L L + L Sbjct: 151 LADKIARIPDVLQTFVPFDYLHIAITGKRPHTLEDLSFQRTGFDEYEHLDNTALCKSLGL 210 Query: 229 LTQTLQTRQPTLTHRAD-------DLFLWQRDPLLLLLASNGCE--SALLIPLTFGNHTP 279 T+ T + + W D + S+ + L I +T Sbjct: 211 ERNTILTGRIAQLENETGGYLSDAEFRQWIADKIWESKLSDHLRLNARLAIAVTLPAGNL 270 Query: 280 GALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL 339 + ++ ++EE LL + + I + + L + + Sbjct: 271 AVISFYSRNADTYTEELFTLLGRMENGIRQLLEQIQ--QKNDALSARIVARKRVEKPLID 328 Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 + + I+ +S +L +++V+ + S+VLI GE+GTGKE+IAR IH+ SPR++KPL Sbjct: 329 NEVLFEGIVGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPL 388 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 + +NCAA+PA L+ESELFGH+KGAFTGA + G+FE+ADGGT+FLDEIG+LP+E Q KL Sbjct: 389 ITVNCAALPAELIESELFGHEKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQVKL 448 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LRVLQE+E ER+GGS+ I V+VRVIAATNR+L + V + +FR DL+YRLNVFP+ELP LR Sbjct: 449 LRVLQEKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLR 508 Query: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 +R EDIPLLA+HF K++ ++R I I +AL+ L S+DWPGN+RE+E+V+ER++L+T Sbjct: 509 ERKEDIPLLAQHFVDKLSEKLSRNITDISPDALKALRSYDWPGNIREMEHVMERSLLMTT 568 Query: 580 GNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVA 639 G L + + + ++++ +E E + I+QVL+ G V Sbjct: 569 GTILKQIMLPK--------MAAQPVGTTISSADGNRIKTLEEMEIEHILQVLKSCKGKVC 620 Query: 640 GPRGAATRLGMKRTTLLSRMQRLGISVR 667 G GAA LG+ +TL S++++LGI Sbjct: 621 GVGGAAELLGLPPSTLNSKIRKLGIKRD 648 >UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5C3_DESRD Length = 521 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 186/520 (35%), Positives = 278/520 (53%), Gaps = 7/520 (1%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 H + + S LD+D + + F S+ + + + + Sbjct: 4 SHESFFREAVLRICSSLDIDKALERCLEYVKQFIPADSMHLSVYLPDVQMLQFVAVAGEG 63 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 +P + + P + D + + +L L + S +++ Sbjct: 64 YEVTNADAISVPAIDWEAPENQRPGMPFVHVVNDPANEPEVETVLHQLNLSSDFSVMVMH 123 Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 L + G + + + ++EE+ +L + + ++IA+ NA R + L E L ++ Sbjct: 124 LYLDGSSIGEVAVRSQGTHKYTEEHGRLFVLLREPLSIALANALKHREVVRLNELLADDS 183 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 ++L + G +++ + +++Q VA+ D+ VL+ GETG GK +IA IH+L Sbjct: 184 RYFQQELRAKQG-QEVVGAEFGLRGVMEQAQQVAQLDNPVLLLGETGCGKGMIADTIHKL 242 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S R P++ +NC AIPASLLESELFGH+KGAFTGA RGRFE A GGT+FLDEIG+L Sbjct: 243 SRRAQGPMITVNCGAIPASLLESELFGHEKGAFTGAERQKRGRFERAQGGTVFLDEIGEL 302 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 PLE Q KLL VLQ +EIER+GGS+TI +++R+IAATNRDL MV QFR DL+YRLNVF Sbjct: 303 PLESQVKLLHVLQHKEIERVGGSQTIALDIRIIAATNRDLAGMVSSGQFREDLWYRLNVF 362 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRA-IDAIPTEALRQLMSWDWPGNVRELENV 570 P+ +PPLR R EDIP L ++F Q A + +P+ AL +LM++ WPGNVRELEN Sbjct: 363 PVMVPPLRQRKEDIPALVRYFLQHKAVELKLPSRPKLPSGALDKLMAYHWPGNVRELENF 422 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 IERA++ T G L + + L D S ++ P + + I + Sbjct: 423 IERALIQTPGGELEIDSLLDNL-----LQTDGTRGSWEPEVNSNQLPSLETVCAEHIRKA 477 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 LR G ++GP GAA LG+ TL RM ++GI+ + L Sbjct: 478 LRRAGGKISGPGGAAEMLGVHPNTLRQRMDKMGIAYKRRL 517 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 177/518 (34%), Positives = 271/518 (52%), Gaps = 17/518 (3%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSA 212 RVL+ I+ + LDL+ + + + + + ++ L D LSA Sbjct: 9 ELRVLLAISKVIDQALDLESALESILKILSDTMSMRRATVTLYDPLSGRLAISTSYGLSA 68 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 E + +T +P + L+ ++ S + +P+ Sbjct: 69 LE-KQRGVYRMDEGIT-GIIFRTAKPYVVPDISLEPLFLDKTGTRRISQERI-SFVGVPI 125 Query: 273 TFGNHTPGALLLAHTSST-LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 G + + + + + + L +A I+ + + + +L+QEN Sbjct: 126 LLHGSPIGVMNVDRVFTGQEQLDADTEFLTVVATLISQFLS---LNEKVKKREAALKQEN 182 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 L Q+ I+ +SQAM ++ Q V VA + +TVL+ GE+GTGK +I R IH+L Sbjct: 183 TSLKYQIARENHGPYIVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIGRIIHEL 242 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S R+ P +K+NCAAIP +LLE+ELFG++KGAFTGA +T GRFE A GT+FLDEIG+L Sbjct: 243 SDRKTHPFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFLDEIGEL 302 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 PL LQ KLLRVLQERE ER+G ++T V+VR+I+ATNR+L +V FR DL+YRLNVF Sbjct: 303 PLTLQSKLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLYYRLNVF 362 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ +P +R+R EDIP L HF ++M R R++ + T AL L+++DWPGNVRELEN++ Sbjct: 363 PVHVPAVRERKEDIPRLLNHFQKEMEREYGRSL-TLTTGALDLLLAYDWPGNVRELENLV 421 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE----NDEEERQRI 627 ER V+LT + L + L P + R + HP + E ER+ + Sbjct: 422 ERLVILTDDKPVEAELV--RGFLTPETHRPGPARHAPEPPAHPEQEDYCQPLKETERREV 479 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + L+ I AA L + + R+++ + Sbjct: 480 LAALKRNAWIQY---KAARELNLTPRQMGYRVRKFNLE 514 >UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax=Oxalobacter formigenes RepID=C3X424_OXAFO Length = 540 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 222/521 (42%), Positives = 302/521 (57%), Gaps = 5/521 (0%) Query: 149 KDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 D D LVD+T+AV++ D+ L A +H FFGL +S+ + Sbjct: 18 HDHDFFHFLVDLTDAVIAATDIPCLAEKTADYLHEFFGLDYISLETYEPASFRLNVQAIR 77 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 P + LL L+ ++ L +R L + P + LA +G + L Sbjct: 78 FEQGKRRLYNSFSKPLHATLLGAALRKQEKILFNRNAILSNAAKYPYVARLAGDGLQVLL 137 Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +PL + G L + F+ E LL I+ R+A+A+ + R T Sbjct: 138 YLPLVSAGNLLGTLGVGSFKPCHFTPETMALLNRISARLAVALDVMLSHRKKTAPASVSP 197 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 E+ + + +I S A++ +LQQ++IVA S++TVL+ GETGTGK +IA+ I Sbjct: 198 NESPITGDNIEETPPPHHLIGHSVAIQSILQQIEIVASSNATVLLQGETGTGKGLIAQTI 257 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H LS R+ + +VK+NC AIP+ L+ESELFGH+KGAFTGA+N G FE AD TLFLDEI Sbjct: 258 HNLSDRKARDMVKMNCTAIPSELMESELFGHEKGAFTGALNKRIGHFEQADKSTLFLDEI 317 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 GD+PL+LQPKLL VLQE +I RLG TI V+VR IAATN DL +ED+ FRSDLFYRL Sbjct: 318 GDMPLDLQPKLLSVLQEHQIRRLGSPHTISVDVRCIAATNCDLVAKIEDKTFRSDLFYRL 377 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVFP+ +PPLR+R EDIP LA+ F +K AR MNR I IP+E L + WPGN+RELE Sbjct: 378 NVFPITVPPLRERAEDIPSLARFFIRKYAREMNRHITGIPSETLALMTRLPWPGNIRELE 437 Query: 569 NVIERAVLL-TRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 NV+ERAV+L ++G LNL LL ++S L + P E ++ + Sbjct: 438 NVMERAVILTSQGGVLNL----SPESLLSYTTQNSPLTVHASSQPVVPVPAIPETDKDTL 493 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 V LRET G + G GAA RLG+KRTTLL+R++R GI+ + Sbjct: 494 VNALRETGGQIGGKTGAAARLGLKRTTLLARLKRFGINADD 534 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 185/543 (34%), Positives = 291/543 (53%), Gaps = 35/543 (6%) Query: 140 QQVALRLLEKDRDHHRVLVDITNAVLSH-------LDLDDLIADVAREIHHFFGLASVSM 192 Q + + L + R+ V+ + LS ++D I +++ +F G S+ Sbjct: 127 QDITEQKLRQSLQTERLQVEAFLSNLSSAFINVPVSEVDRKIEKALQKVVNFLGFERSSI 186 Query: 193 VLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQR 252 ++ L P + + + +Q + ++L Sbjct: 187 WHFTPDRSSLRITHSYALPGVKPP--PTELMNLIPIWIEMIQLGESFRVSDVEELSDKFW 244 Query: 253 DPLLLLLASNGCESALLIPLTFGNHTPGALLLAH-TSSTLFSEENCQLLQHIADRIAIAV 311 G +S + IP + G GA+ + + +E Q L+ + + A A+ Sbjct: 245 REKQYCKDQGGIKSIMFIPASVGGTIVGAITFVSYSVKKEWPDELTQRLRLLWEVFANAL 304 Query: 312 GNADA-------WRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIV 364 A + L++ L+ EN L +Q+ +II +S+A+ ++LQQ+ V Sbjct: 305 ERKRADQKIQNALAEIRQLKDRLEAENVYLRDQIDVEYKHEEIIGKSEAIRNVLQQIQQV 364 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 A +DSTVLI GETGTGKE+IARAIH R+ + ++K+NCAA+PA+L+E+ELFGH+KGA+ Sbjct: 365 APTDSTVLILGETGTGKELIARAIHNAGQRKARAMIKVNCAALPAALIEAELFGHEKGAY 424 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA+++ GRFE A+G T+FLDEIG+LPLELQ KLLRV+QE + ERLG S+ + +VRVI Sbjct: 425 TGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQEGQFERLGNSKPVKADVRVI 484 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 AATN L Q V++ +FR DL+YRLNVFP+ +PPLRDR EDIPLL ++ ++ + I Sbjct: 485 AATNVSLKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQEDIPLLVWAMVEEFSKVFGKTI 544 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL 604 + IP + + + + WPGN+REL N++ERA++L+ G +L + + Sbjct: 545 ERIPRKNMEIMERYLWPGNIRELRNLVERAMILSNGGTLVVDIL---------------- 588 Query: 605 RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + + ER+ I +L +T + G GAA L MK TTL SR+++LG+ Sbjct: 589 --DGSAAAANEPMTMEAAERKHIGFILEKTGWRIRGKGGAAEILDMKPTTLHSRIKKLGV 646 Query: 665 SVR 667 + Sbjct: 647 KRK 649 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 185/596 (31%), Positives = 283/596 (47%), Gaps = 23/596 (3%) Query: 74 VTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIIT-PVLQ 132 V A T+++ + D + ++ + L ++ H S+ I+ P + Sbjct: 107 VDARTDWEITLHDGDHLCLGDPAAPVTVLVYLPEHARSAASELGDRLIASRSIVDLPAVT 166 Query: 133 SWLNDEEQQVA--LRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASV 190 + + + L+ + I V + +L + +VA + Sbjct: 167 HRVEHDPASALRLYKALQPLSARLDLSATIDAVVCATFELLPQVTNVAVLMRSEVDKDRF 226 Query: 191 SMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLW 250 ++ + R S P + +L + L R +T A + Sbjct: 227 TVAVSQTRDGSGHGEAR---GESRGDGRPAEVRASRSVLRRVLSERAAVITANAQEEL-- 281 Query: 251 QRDPLLLLLASNGCESALLIPLTFGNHTPGALLLA-HTSSTLFSEENCQLLQHIADRIAI 309 + S + +PL G+ G + S+ + SE + ++ + + A+ Sbjct: 282 ---ASSESILGGKILSMVAVPLWRGDEITGLIQADNRASAGMLSERDLEVALLLGAQAAL 338 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 A+ NA + +E L+ EN L + NL +II +S AM+ + Q+ V + + Sbjct: 339 AIDNAALVSRLKVAEERLRGENTYLKRR-EENLRFENIIGESSAMQAIFDQLRKVVDTRA 397 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TV I GETGTGKE+IA AIH S RRDK V NCAA+P +LLESELFGH KGAFT A Sbjct: 398 TVCIEGETGTGKELIATAIHYESNRRDKMFVAQNCAALPENLLESELFGHKKGAFTSADT 457 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 +G FEIADGGTLFLDEIG++PL LQ K+LRVLQE I LG +R V+ R+I ATNR Sbjct: 458 DKKGLFEIADGGTLFLDEIGEMPLSLQAKVLRVLQEGTIRPLGSTRERQVDARIICATNR 517 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL VE FR DL+YRL VFP+ LPPLR+R EDIP L +HF ++ +R + + Sbjct: 518 DLAAEVEKGSFRQDLYYRLVVFPIRLPPLRERREDIPPLCEHFLKRYSREFRQEVLGFSQ 577 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTR-GNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 E L + ++ WPGN+RELEN ++R V+ T G+ + + P L + + + Sbjct: 578 ECLDVMSTYQWPGNIRELENEVQRLVIQTDAGSWIEVSEL------SPRLRKVEGTLARI 631 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 A ++ ER + + LRE + A LG+ R L ++ + + Sbjct: 632 APKKGTLKAMMEQVERWLLAEALREHDN---NKTRTAQSLGITREGLHKKLSKYSM 684 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 180/476 (37%), Positives = 268/476 (56%), Gaps = 29/476 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D ++ ++L + + ++ P+L DL + + Sbjct: 7 ILVIDDEEHMCWALEKGLMQEGYQVFTSTR----GKHGLDIIRKETPSLV--ILDLKMPE 60 Query: 252 RDPLLLLLASNGCESALLIP-LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D L +L+ + L I +T A+ +T + + L D + + Sbjct: 61 MDGLEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDL-----DELKMV 115 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A + LQ+E L +L G I+ SQA+ D+ ++ VA S++T Sbjct: 116 IRQAL-------MVNHLQEEVTFLRSELNKKYG--QIVGNSQAIHDVCGLIEKVADSNAT 166 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VL+ GE+GTGKE+ A +IHQLS RRDKP V INCAA+P SLLESELFGH+KGAFTGA+ Sbjct: 167 VLVTGESGTGKEITALSIHQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVAR 226 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+A+ GTLFLDEI ++PL +Q KLLRVLQE+E ER+GG+ +I ++VRVIAATNRD Sbjct: 227 KLGRFELANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRD 286 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 + + FR DLFYRLNV P+ LPPLR+R EDIPLLA HF +K + E Sbjct: 287 PMECIRKGTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPS---QEQRMSPE 343 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L+S++WPGN+REL+NVIER+++L +GN + H ++ + L + ++ + Sbjct: 344 AMGLLISYEWPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQKLDEVKNETT--HGLII 401 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 DE E++ I++ L ++NG AA LG+ R+ LL R Q+ + + Sbjct: 402 NFPDDGISFDEVEKELILKALEKSNG---NQTRAAQLLGITRSALLYRAQKYRLKI 454 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 197/611 (32%), Positives = 298/611 (48%), Gaps = 45/611 (7%) Query: 72 SDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFI-----RTHGSRFTSQDCTLFNWLARI 126 ++ + Y + G + F ++ + +L + Sbjct: 138 AEADRRNYAALGVQSYLAIPIYAG----GSVEFFIDAHHVRARHIWSKESISLLRLFGEV 193 Query: 127 ITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHL--DLDDLIADVAREIHHF 184 L + ++V R + D++ ++ ++D I ++ Sbjct: 194 CANALGGGHDTRNEEV-------RLQFERFVSDLSVKFINVTADEVDREIIAALEQVREM 246 Query: 185 FGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRA 244 F ++ K E + + + L + + Sbjct: 247 FQFDGFGLISLSPDKGEAIVSHACYGEGIERSPEKIDISLRFPWTKERLLRGEMIHFNSR 306 Query: 245 DDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTL-FSEENCQLLQHI 303 +D+ + ++ IP+ + +T E L+ + Sbjct: 307 EDVP-EDAAVDRQSWQAMKVKANFSIPILVAGSVAYIIAAHDVRATRCLDEGLLLRLRLL 365 Query: 304 ADRIAIAV-------GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMED 356 + A A+ ++ + L+E LQ E L +++ + II QS A++ Sbjct: 366 GEIFANALFRCKSEAEFRNSCTEIQRLKEKLQLEAEYLQTEIICSHCNEQIIGQSAALDK 425 Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 +L+ V+ VA +DSTVLICGETGTGKE++ARAI +LS RR+KP+VK+NCA++PA+L+ESEL Sbjct: 426 VLRLVEQVASTDSTVLICGETGTGKELVARAIQELSLRRNKPIVKVNCASLPAALVESEL 485 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FG +KGA+TGA+ GRFE+ADG T+FLDEI ++ ELQ KLLRVLQE + ERLG ++T Sbjct: 486 FGREKGAYTGALTRQAGRFEVADGATIFLDEISEMSPELQAKLLRVLQEGQFERLGSTKT 545 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 I V+VRVIAATNR+L + V+ FR DL+YRLNVF + +PPLR+R EDIPLLA F + Sbjct: 546 IHVDVRVIAATNRNLAEEVKKGTFREDLYYRLNVFQIVVPPLRERAEDIPLLAWAFVHEF 605 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP 596 M + I+ I + L ++ WPGNVREL NVIE V+++ GN L++ L Sbjct: 606 NEKMGKKINRIAKSDMNALQNYHWPGNVRELRNVIEYGVIVSTGNGLHVRL--------- 656 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 S ++ P DE ERQ I VL+ T + G GAA LGM +TL Sbjct: 657 -------PEGSGEEIARPLL--MDEVERQHITGVLQRTGWRIKGENGAARILGMNPSTLY 707 Query: 657 SRMQRLGISVR 667 SRMQ+LGI+VR Sbjct: 708 SRMQKLGIAVR 718 >UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q938_DESAH Length = 525 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 177/520 (34%), Positives = 282/520 (54%), Gaps = 10/520 (1%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 D + + S LD++ + + + + + V+ + N L Sbjct: 4 DENDFFRQTALRISSSLDINKAMRNCMNYLKQHIPASGMYFVVYEPGLNIINILASIMPK 63 Query: 212 ASHCACLPRCMPGE--SVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 + +P E L + + Q + + +D + + L+ S L Sbjct: 64 KIQGSARRISIPAEYQDDLKKRFSEESQIKIINDLNDEPEPLQKIVNLVFPFE--CSLLE 121 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + L G + +SE + L+ + + A+A+ N + + L + L Sbjct: 122 MHLKLDGTRIGLFGVLSEGKHRYSEFHSHLITLVHEPFAVAISNILQHQEIQRLNKILSD 181 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 +N L +++ +L II ++D+++ V+ VA +DS V+I GETGTGKEVIA AIH Sbjct: 182 DNRYLHREMM-HLTGDTIIGSKFGLKDVMRMVEHVAPTDSPVMIMGETGTGKEVIANAIH 240 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 S R+D +KINC AIP +L++SELFGH+KGAFTGA++ RGRFE A GT+FLDE+G Sbjct: 241 LSSRRKDSAFIKINCGAIPDNLIDSELFGHEKGAFTGAVSRKRGRFERAHNGTIFLDEVG 300 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +LPL+ Q +LLRVLQ+ EIER+GGS TIPV+VR++AAT+++L +MV QFR+DL++RLN Sbjct: 301 ELPLQAQVRLLRVLQQHEIERVGGSETIPVDVRIVAATHKNLEEMVRTGQFRADLWFRLN 360 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELE 568 VFP+ +PPLR R D+P L +F +K + + R ++ + ++ +++WPGNVREL+ Sbjct: 361 VFPIHIPPLRHRTIDLPALTDYFLEKKSMELKIRKRPSLAPGTMEKMQAYEWPGNVRELQ 420 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N++ERA++ + + L + P E+ L+ +++ P DE I Sbjct: 421 NLVERALIFNQMKNDESQLTFDPQLINPIPKENMTLKREDGKIIRP----LDEVMANHIQ 476 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 +VL +TNG V G GAA+ L + TL RM++L I Sbjct: 477 KVLDQTNGKVEGKNGAASLLKINPGTLRGRMKKLKIDYGR 516 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 160/518 (30%), Positives = 255/518 (49%), Gaps = 23/518 (4%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 V+ + + L LD + + + + ++ L D Sbjct: 6 RETELNVIFETCRVIGQALKLDQALDTILAILSSSLAMKRATITLEDEDTGYLIIRASHG 65 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 L+ + + + Q+ + L+ L+ S L Sbjct: 66 LTDAERRRG--VYRKDEGITGLIFQSADSYVVPDISKEPLFLNKTRSRLIQKESI-SFLG 122 Query: 270 IPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +P+ G L + + EE+ +LL +A IA V R + + L Sbjct: 123 VPILLHGKAIGVLHVDRLFGDEVPFEEDIRLLSIVATLIAQFVS---LNRQVKLREAKLL 179 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 ++ ++ + ++ +S +M + + ++ VA S ++VL+ GE+GTGK ++A+ + Sbjct: 180 RDCSPSGKKGIEAGDRFFMVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVAQML 239 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H+LS R P VKINCA++P +LLESELFG++KGAFTGA+ + GR E A+GGT+FLDE+ Sbjct: 240 HELSIRSSAPFVKINCASLPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEV 299 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+L LQ KLLR LQ++E ERLG +RT V+VRV+AATNRDL +V + FR DL+YRL Sbjct: 300 GELTPALQAKLLRFLQDKEFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRL 359 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVFP+++PPLR R EDIP L HF +++R R I I A+ L +DWPGNVRE+E Sbjct: 360 NVFPIQIPPLRARKEDIPDLLHHFLDRISREYGRRI-GITNAAMALLAGYDWPGNVREME 418 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N++ER V++ + + +++ L M T ++ ER+ I+ Sbjct: 419 NLVERMVIMADEDEIGVNVLP------------PFLSEQMTGSGGETLSRIEKMERKEIL 466 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 L A LG+ + R+++ G+ Sbjct: 467 AALERNGW---NQTRTAKELGITLRQIGYRVRKFGLDR 501 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 166/515 (32%), Positives = 272/515 (52%), Gaps = 27/515 (5%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L ++ A+ S D D + D+ + + F+G+ + D + S Sbjct: 14 LLTSVSKAL-SQKDFDKALRDILKIFYSFWGVEYSYIAFYDKSTKTIKIREAFGFNQSVK 72 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 L G ++ + P + + +L N E+ + +P+ Sbjct: 73 KILFESGKG---IVGNIFKNSIPVVIKDPKHDKAFLNKTKILDKIKN--EAFIGVPIRSE 127 Query: 276 NHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 + T G L + ++ ++ I + + + + + + S +++ L Sbjct: 128 DRTIGVFCLFKDLNKHEELTRIVDIMLVVSAMIGM---SYKLFGILQEEKASWEEQRQLL 184 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 +++ I + +S+A+ L + +A +DSTVL+ GE+G GK +IA+AIH LS R Sbjct: 185 AKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKAIHTLSER 244 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 +DKP + +NCAAIP +LLE+ELFG++KGAFTGA+++ +G+FE+A+GGT+FLDEIG+LPL+ Sbjct: 245 KDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGTIFLDEIGELPLQ 304 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 Q KLLRV+QE+E+E+LG ++I VNVRVIA+TN+DL MV +FR DL+YRLNV P+ Sbjct: 305 SQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDLYYRLNVIPIR 364 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 +P LR+R EDIPLL KHF K +H + I I EA+ L++++WPGN+RELEN+IER Sbjct: 365 VPALRERKEDIPLLVKHFLDKFNKHYKKHI-NIEKEAMEALVNYNWPGNIRELENLIERL 423 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 V++ + + + L D + E++ I + L + Sbjct: 424 VVINNKDITKEDVLLATKINSNKLQTDIPS-------------IIESTEKEAIKKALEKC 470 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 AA LG+ L R+++ I + + Sbjct: 471 G---YVKSKAAKILGLTLRQLDYRIKKYNIPIERL 502 >UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobiales RepID=NIFA_AZOC5 Length = 615 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 160/566 (28%), Positives = 266/566 (46%), Gaps = 61/566 (10%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 + +I+ + + L+ +A+V + + + + D + + + + Sbjct: 56 VYEISKILTAPRRLEVTLANVVNVLSSMLQMRHGMICILDSEGD-PDMVATTGWTPEMAG 114 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN 276 + +P ++ + Q + T+ P + L+ L S + +P+ + Sbjct: 115 QIRAHVPQKA--IDQIVATQMPLVVQDVTADPLFAGHEDLFGPPEEATVSFIGVPIKADH 172 Query: 277 HTPGALLLAH--TSSTLFS-EENCQLLQHIADRIAIAVG--------NADAWRSMTDLQE 325 H G L + + F +E+ + L +A+ + V L++ Sbjct: 173 HVMGTLSIDRIWDGTARFRFDEDVRFLTMVANLVGQTVRLHKLVASDRDRLIAQTHRLEK 232 Query: 326 SLQQENHQLSEQLLSNLGIG--DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 +L++E ++ I+ S ++ L+ +VA+S+STVL+ GE+GTGKE+ Sbjct: 233 ALREEKSGAEPEVAEAANGSAMGIVGDSPLVKRLIATAQVVARSNSTVLLRGESGTGKEL 292 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 ARAIH+LSPR+ KP VK+NCAA+P S+LESELFGH+KGAFTGA+N +GRFE+A GGTL Sbjct: 293 FARAIHELSPRKGKPFVKVNCAALPESVLESELFGHEKGAFTGALNMRQGRFELAHGGTL 352 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG++ Q KLLRVLQE E ER+GG+RT+ V+VR++ ATN++L + V +FR+D Sbjct: 353 FLDEIGEITPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVCATNKNLEEAVSKGEFRAD 412 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YR++V PL LPPLR+RP DIP LAK+F + + + + A+ L +PGN Sbjct: 413 LYYRIHVVPLILPPLRERPGDIPKLAKNFLDRFNKENKLHMM-LSAPAIDVLRRCYFPGN 471 Query: 564 VRELENVIERAVLLTRGNSLNLHLN----------------------------------- 588 VRELEN I R L + H Sbjct: 472 VRELENCIRRTATLAHDAVITPHDFACDSGQCLSAMLWKGSAPKPVMPHVPPAPTPLTPL 531 Query: 589 ------VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPR 642 +L + + E+++++Q + + + Sbjct: 532 SPAPLATAAPAAASPAPAADSLPVTCPGTEACPAVPPRQSEKEQLLQAMERSGWV---QA 588 Query: 643 GAATRLGMKRTTLLSRMQRLGISVRE 668 AA L + + +++ I ++ Sbjct: 589 KAARLLNLTPRQVGYALRKYDIDIKR 614 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 193/497 (38%), Positives = 275/497 (55%), Gaps = 41/497 (8%) Query: 191 SMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLW 250 ++++ D N L+ + + + + R T L P L D+ + Sbjct: 12 TILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQATFAL----PDLI--LLDIMMP 65 Query: 251 QRDPLLLLLASNGCESALLIP---LTFGNHTPGALLLAHTSSTLFSEENCQL---LQHIA 304 D + IP +T + T + + + + + QL L I Sbjct: 66 GMDGFETCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIH 125 Query: 305 DRIAI--------------AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQ 350 +++ A + L++ LQ EN L E++ +I+ Q Sbjct: 126 THLSLRRLQQSMEQLVAERTQALTKALAEVERLKDQLQAENTYLREEIKQTKNFDEIVTQ 185 Query: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410 S+A + +L+ V+ VA +++TVLI GE+GTGKE++ARA+H LS R++KPLVKINCAA+PA+ Sbjct: 186 SKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPLVKINCAALPAT 245 Query: 411 LLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIER 470 L+ESELFGH+KGAFTGA GRFE+ADGGT+FLDEIG++PL+LQ KLLRVLQE E ER Sbjct: 246 LIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQEGEFER 305 Query: 471 LGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAK 530 +G ++T+ VNVRVIAATNRDL + +FR DL+YRL+VFP+ PLR R EDIPLL + Sbjct: 306 VGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKEDIPLLVR 365 Query: 531 HFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVR 590 HF K M + ID IP L L + WPGN+RELEN+++RA++++ G +L + +R Sbjct: 366 HFCAKHGADMGKTIDTIPATVLDTLTDYHWPGNIRELENLVQRALIMSPGRTLVIGDWLR 425 Query: 591 QSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGM 650 + L T +E ER I+ VL T+ V+G GAA L M Sbjct: 426 KKPL---------------ANQKATLMTMEEAERAHIISVLELTHWKVSGDNGAARLLDM 470 Query: 651 KRTTLLSRMQRLGISVR 667 TTL SRM++LGI Sbjct: 471 IPTTLDSRMKKLGIRRP 487 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 178/535 (33%), Positives = 267/535 (49%), Gaps = 24/535 (4%) Query: 139 EQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHR 198 E+ A E + L I + +++L+A++ +H GL + + + + Sbjct: 7 ERPSAPTRNELLDAQLQALAQIARILNRGRPIEELLAEILAVLHEDLGLLHGLVSICNPK 66 Query: 199 KNEKFSLWCSDLSASHCACLPR-CMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLL 257 S + + L+ + R D + L Sbjct: 67 DGSLQVGAVHSDSETVVRACESTRYRIGEGVFGNILKHGNSVVLGRIDAEPRF----LDR 122 Query: 258 LLASNGCESALLIPLTF-GNHTPGALLLA-HTSSTLFSEENCQLLQHIADRIAIAVGNAD 315 L + + +P+ T G L + E +L++ +A +A V Sbjct: 123 LALYDMDLPFIAVPIKAVDGTTIGVLAAQPDRRADELMPERTRLMEIVARLLAQTVRLVV 182 Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDII-YQSQAMEDLLQQVDIVAKSDSTVLIC 374 + + E +L ++ + G +++ + +M + QV VAK +STVLI Sbjct: 183 NLED----GQEVVDERDELRREVRAKYGFENMVVGHTASMRRVFDQVRRVAKWNSTVLIL 238 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GE+GTGKE+IA AIH SPR +PLV++NCAA+P +LLESELFGH+KGAFTGA+ +GR Sbjct: 239 GESGTGKELIASAIHYNSPRAHQPLVRLNCAALPETLLESELFGHEKGAFTGAVKQRKGR 298 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 FE ADGGTLFLDEIG++ Q KLLRVLQE E+ER+GGS+T+ VNVR++AATNRDL Sbjct: 299 FEQADGGTLFLDEIGEISPMFQAKLLRVLQEGELERVGGSQTVKVNVRIVAATNRDLEHE 358 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 VE +FR DL+YRLNV + +PPLR+R DIP LA+ K+AR R + + ALR Sbjct: 359 VEQGKFREDLYYRLNVMAIRVPPLRERSADIPELAEFLLDKIARQQGRKLK-LTDSALRL 417 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 LMS WPGNVRELEN +ER+ +++ +++ + +A Sbjct: 418 LMSHRWPGNVRELENCLERSAIMSEDGTISRDVVSLTGLDHDATPLAPVPEVDLADDSLD 477 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 R+R++ L + + AA LGM + R+Q L I +R++ Sbjct: 478 D--------RERVIAALEQAGWV---QAKAARLLGMTPRQIAYRVQTLNIHMRKI 521 >UniRef50_B8FB78 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB78_DESAA Length = 1036 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 195/608 (32%), Positives = 293/608 (48%), Gaps = 40/608 (6%) Query: 80 YQGEMVDYSRHAVLLGSSGMA-----------ELRFIRTH----GSRFTSQDCTLFNWLA 124 Y + Y++ + EL +RT + +A Sbjct: 449 YTALLQAYNKEPEEAIRRSLGQSLKWLEESGHELEILRTRMEIIRRLLLQGEAEAAQGMA 508 Query: 125 RIITPVLQSWLNDEEQQVALRLLEKDRDHHRVL---VDITNAVLSHLDLDDLIADVAREI 181 ++ VL+ + + L R+L + N + S D +L+ + + Sbjct: 509 DRLSGVLEQYHEETIPPDLKPLFRTRASAQRLLSGIYSLGNDMASVQDGKELLHSILSTV 568 Query: 182 HHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLT 241 + G ++ + + + L AS + + +Q Sbjct: 569 NQLTGAERGAIFVANEDPHG----PPMKLRASRNLTADQVERPAFEPSMRLIQQAASLGV 624 Query: 242 HRADDLFLWQRDPL-LLLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQL 299 + + P +S S++ P+ F T G L + ++ F E + +L Sbjct: 625 DKKSFIRKESAPPEEWSAGSSEAARSSICAPIIFKGKTLGVLYHDNRLLNSAFKESDFEL 684 Query: 300 LQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQ 359 L A + A A+ NA+A + L+ ++ Q S S ++I +SQA+ +L Sbjct: 685 LSFFAAQAAAALDNANAQEEIERLKRAMAQGGRIQSRPSFSRENYKEVIGKSQAVRKMLH 744 Query: 360 QVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGH 419 ++ VAK+ S VLI GETG GKE+ A A+H S RR K VK NC+A+ +L+ SELFGH Sbjct: 745 LIEQVAKTGSNVLILGETGVGKELAANAVHYHSKRRGKAFVKANCSALTETLINSELFGH 804 Query: 420 DKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPV 479 +KGAFTGA + GRFE+AD GT+FLDEIGDLPL++Q LLRVLQ E ER+GG+ TI Sbjct: 805 EKGAFTGASSRRIGRFELADKGTIFLDEIGDLPLDVQANLLRVLQSSEFERVGGNETIRS 864 Query: 480 NVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARH 539 + R+IAATNRDL ++ D++FR DL+YRLNVFP+ +PPLRDR EDIPLLA+ F + A+ Sbjct: 865 DFRLIAATNRDLERLAADKKFRQDLYYRLNVFPILVPPLRDRKEDIPLLAEQFIRGFAQK 924 Query: 540 MNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN 599 M + I E + +L+ + WPGN+REL NVIER ++L+ G Q+ Sbjct: 925 MQIEVKKISREEMNKLLKYHWPGNIRELANVIERGMILSSGPLFTAPDLEGQTDGHSLHR 984 Query: 600 EDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 S +E ER I+ L + N V GP G A L + +TL +RM Sbjct: 985 PHS----------------LEENERSHILWALEQKNWKVRGPGGVAEFLDINPSTLAARM 1028 Query: 660 QRLGISVR 667 ++LGI Sbjct: 1029 KKLGIKRP 1036 >UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P9_DESAA Length = 514 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 175/515 (33%), Positives = 277/515 (53%), Gaps = 13/515 (2%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 D ++ + T + ++++ + D + +F SV + D ++ +D Sbjct: 2 DENKFFREATLRICGSIEIEKALFDCLDYLKNFIPAESVYLHFIDLKEKTGVVYAMADGG 61 Query: 212 ASHCACLPRCMPGESV-LLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 + P L+ + L RAD L +L + +G S +++ Sbjct: 62 GGRQLNIRFDYPAPVWRLIGDGSDLPEEVLLDRADKGAL--GKHMLKIAGLSGIRSLMMM 119 Query: 271 PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 L+ G+ G + + F E+ L+ + A+A+ N+ + + +L+ L + Sbjct: 120 RLSLGSKEVGVIAFEARGESRFRREHLHRLRLLQSPFAVAISNSRRYIELLELKNLLADD 179 Query: 331 NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 N L ++LLS +II ++ ++QQV+ VA S VL+ GETG GKEVIA AIH+ Sbjct: 180 NKYLQQELLSQKS-DEIIGADFGLKHVMQQVNKVAPLSSPVLLMGETGVGKEVIANAIHK 238 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 S RR++P +K+NC AI +L++SELFGH +GAFTGA RGRFE A G++FLDEIG+ Sbjct: 239 YSSRRNEPFIKVNCGAISETLIDSELFGHVRGAFTGAFENKRGRFERAHQGSIFLDEIGE 298 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 LP Q +LLRVLQE E E +G ++TI V+ RVIAATNR+L MV + FR DL++RL V Sbjct: 299 LPKAAQLRLLRVLQEMEFEPVGSAKTIKVDARVIAATNRNLEDMVAEGSFRKDLYFRLKV 358 Query: 511 FPLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELEN 569 FP+ +PPLR+R DIP L ++F K R M ++ A+++L +++WPGNVRELEN Sbjct: 359 FPIYIPPLRERACDIPALTQYFMHKKYREMGFAEYPSLAPGAVKRLEAYEWPGNVRELEN 418 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 +ERA++++ G +L+ + + + DE I++ Sbjct: 419 AVERAMIVSGGKTLHFDD--------SGFEKPRCVPEEAPHDAEDSPAMLDEVISSHIIK 470 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +L T G + G GAA +G+ TL ++M++LGI Sbjct: 471 MLHRTKGKINGEDGAARAMGVNPATLRNKMRKLGI 505 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 165/475 (34%), Positives = 253/475 (53%), Gaps = 21/475 (4%) Query: 194 LGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRD 253 + ++ ++L + + G + + + DL + D Sbjct: 17 ILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVI----TDLKMPNGD 72 Query: 254 PLLLLLASNGCESA-LLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVG 312 L LL ++I +T A+ + + + + D + + V Sbjct: 73 GLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMR-----NDLVTLTVN 127 Query: 313 NADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVL 372 A ++ SLQ+EN L + L G ++ S+ M+ + ++ VAKSDSTV+ Sbjct: 128 RALSY-------ASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVI 180 Query: 373 ICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR 432 I GE+GTGKE++ARAIH S R + PL+ +NC AIP LLESELFGH+KGAFTGAI Sbjct: 181 IYGESGTGKELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRL 240 Query: 433 GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLW 492 GRFE+A GG++FLDEIGD+ LQ K+LRV+QE++ ER+GG +TI +VR+IAAT+++L Sbjct: 241 GRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLE 300 Query: 493 QMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEAL 552 V +++FR DLFYR+NV P+ LP LR+R DI +LA HF QK A+ + + EA+ Sbjct: 301 LAVTEKRFREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAI 360 Query: 553 RQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLL 612 ++ + WPGNVRELEN+IE V++ + L + R S + + Sbjct: 361 ACMLHYPWPGNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKK-ETQSFKEYQIPEEG 419 Query: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + E+ +++ L +TNG+ AA L + RTTL+ +++RL IS Sbjct: 420 IDFNDVVYQFEKNILLKALAKTNGV---KNRAAKLLNLNRTTLVEKLKRLNISSE 471 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 174/475 (36%), Positives = 254/475 (53%), Gaps = 23/475 (4%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ + + ++ +A + + GE L +T + DLFL Sbjct: 18 ILVIEDEAANREAIALLLGNAGYQ--VTTAETGEKAL-EILSKTPFEVIL---TDLFLPG 71 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 + +L + L G A+ + + + + + IA A Sbjct: 72 VSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHF-EKLQVIIAKA 130 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V + L EN L +QL +II S M+ + +++ V +DST Sbjct: 131 VE-----------KSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDST 179 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 +LI GE+GTGKE++A+AIH RR+KP V INC AIPA LLESELFGH +GAFTGA+ Sbjct: 180 ILILGESGTGKELVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVAD 239 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G+F+ A GT+FLDEIG +PL LQ KLLRVLQE+E+E++G S+ I ++VRVI+ATN + Sbjct: 240 KTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCN 299 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + VE +FR+DL+YRLNV P+ LPPLR+R EDI LLA++F QK MN+ + +I Sbjct: 300 LEEEVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPG 359 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR-SSMA 609 A+ L ++ WPGNVRELENVIER V LT ++ +ED + + Sbjct: 360 AMNCLENYHWPGNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLT 419 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + ER I + + G+ AA+ L +KRTTL+ +++RLGI Sbjct: 420 ESGMDMPEVIAGIERCLIKSAMGLSGGV---KARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Planctomycetaceae RepID=D2R3W1_9PLAN Length = 611 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 167/612 (27%), Positives = 277/612 (45%), Gaps = 46/612 (7%) Query: 56 LHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQ 115 +H + + + T G+ VD +R A + FI + S+ Sbjct: 46 VHSVVVCEEGLWWVRDAGSRNGTYLNGQKVDEARLAENCSLK-IGSTEFIFLQSASRPSE 104 Query: 116 DCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIA 175 + + V+Q LR +E+ D L ++ +L D D ++ Sbjct: 105 SEQQEHTQTIVRDRVVQGHDTGSIGVTVLRDVERAHDFL-TLHQLSIKLLGCTDPDQVVR 163 Query: 176 DVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQT 235 + + A V + K + + +A + + L ++ Sbjct: 164 ESLDLLQQRTRAAVVGFLWVSDDGQLKPKVVMPEDAAGK-------VKLSNSLTEMVIRQ 216 Query: 236 RQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEE 295 + + A+ +PL T GA+ L F + Sbjct: 217 GKAVWIDSQL--------HSEGMQTLQHYADAICVPLIHEATTLGAIHLY-LEHGRFRQS 267 Query: 296 NCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAME 355 + ++ +A+ + +A+ A ++ L + + ++I S+ M+ Sbjct: 268 DFEVAIPLANILTVALVRARRDATLKADHRRL----------IDKSAVSDELIGDSKPMD 317 Query: 356 DLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESE 415 DL ++ VA++ +VL+ GE+G GKE++ARA+H+ S R D+P++ +NCAA+P L+ES+ Sbjct: 318 DLRSRIARVARATGSVLVRGESGVGKELVARAVHRSSNRSDRPMLSVNCAALPRDLMESQ 377 Query: 416 LFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSR 475 LFGH KGAFTGA + H G F+ A GTLFLDE+G++ LE Q KLLR+L+ +GG++ Sbjct: 378 LFGHKKGAFTGADSDHVGWFQQAHTGTLFLDEVGEMTLEGQAKLLRILEGHPFLPVGGTK 437 Query: 476 TIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQK 535 + V+VRVIAATNRDL + V + +FR DL+YRL+VF L +PPLR+R DI L F Sbjct: 438 EVSVDVRVIAATNRDLAEFVREGRFREDLYYRLSVFELYIPPLRERGSDIRKLIDFFVDH 497 Query: 536 MARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLL 595 R R + +A +L + WPGNVR+L NVI+ AV++ G+ + + Sbjct: 498 FRRQHGRPSLTLSVDAREKLEGYQWPGNVRQLRNVIDSAVVMCEGSIILPDDLGLR---- 553 Query: 596 PTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 + + D ER+ I + L+ T+G V AA LG+ R TL Sbjct: 554 -----------DVGNAAELESLRMDYWERRLIQEALKRTSGNVP---EAAKLLGLGRATL 599 Query: 656 LSRMQRLGISVR 667 +++ GI + Sbjct: 600 YRKIEEYGIERK 611 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 169/517 (32%), Positives = 265/517 (51%), Gaps = 18/517 (3%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSA 212 V+ I+ A++ D++ L+ +V + G+ + L + S Sbjct: 10 EISVIQKISVAIIHERDVEKLLENVLGILESELGMLRGTFALLFGDT---LKIEASRGLD 66 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 GE + + + + + + + +PL Sbjct: 67 ETEKQRGFYRMGEGIT-GHVAERGLSHVIPDLRKDSRFLNRTGSRHYETQ--VAFICVPL 123 Query: 273 TFGNHTPGALLLAHTSSTLFS-EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 G L + + + LL+ IA+ A A+ + +E++ +EN Sbjct: 124 IHDGQVIGTLSIDRPVDGSTDLDRDVALLEIIANITGDA---ANECIELHGEREAMLEEN 180 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 +L + L + G+++ + M + +QV VA SD+TVLI G +GTGKE+IARAI L Sbjct: 181 RKLRDMLSN--NPGELVGNCREMRQVYEQVRQVAPSDATVLIRGGSGTGKEMIARAIVNL 238 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S R+DKP + +NCAA+P +L+ESELFGH+KGAFTGA+N GR E A+GGTLFLDE+GDL Sbjct: 239 SARKDKPFITLNCAALPENLVESELFGHEKGAFTGALNRRIGRAEAANGGTLFLDEVGDL 298 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 ++ Q KLLR LQER R+G + + +VR +AAT+R+L +++ +FR DLFYRLN+F Sbjct: 299 TMQTQVKLLRFLQERTFSRVGSNEELHSDVRFLAATSRNLEELIAQGKFREDLFYRLNIF 358 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ +P L R DI LLA+HF +KM N+ + + T A+ LMS+ WPGNVRELEN I Sbjct: 359 PITMPDLAKRKSDIILLAEHFIEKMNLRYNKKVGRLSTTAINLLMSYHWPGNVRELENCI 418 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 ER VL + ++ + L T ++ + + + P D ER+ I + + Sbjct: 419 ERGVLTATDDCIHSYNLPPS---LQTSLSVGSVGGTPSDKIAPLEVMMDNYEREIITEAI 475 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + +G ++ A LG+ + RM +LGI + Sbjct: 476 KRNDGNIS---AAGRDLGVSPRMMNYRMNKLGIKLGR 509 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 180/571 (31%), Positives = 264/571 (46%), Gaps = 26/571 (4%) Query: 108 HGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSH 167 ++ T + + Q L K+ + L + + Sbjct: 90 REAKATRPSGFIVKPFREKDLLISLEIAEYLHQNSNDAQLRKEAVFLQDLKTLAE---NG 146 Query: 168 LDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESV 227 + + + + VS + + + Sbjct: 147 GEWTAQLLGIVKAFQRLIPFDYVSAGFFGKNFLPFKGMHFLRIGFDEYQAMDAEGLRMVT 206 Query: 228 LLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS----------NGCESALLIPL--TFG 275 + + + + + A S L++P+ Sbjct: 207 NVRAAELANMMAALPPISQVEYYNAEKFRKMSAEIPLKKLIAGKFDMRSNLVMPIANISI 266 Query: 276 NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLS 335 + F E++ +L + I A+ S + L ++ Sbjct: 267 DGKQFFFCFYSRRPDAFGEQDLELCARLQPAIESAIRKMIRAASTSGPDMELDHAIEVMA 326 Query: 336 EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 + ++ QS M ++L + VA SD++VLI GE+GTGKE +A IHQLSPR+ Sbjct: 327 GSRSESPVFDSMVGQSHLMLNILDLISQVAPSDTSVLITGESGTGKEHVADTIHQLSPRK 386 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 KP VK+NCAA+P +L+ESELFGH+KGAFTGA GRFE ADGGT+FLDEIGD+PLE+ Sbjct: 387 SKPFVKVNCAALPINLIESELFGHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPLEV 446 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q KLLRVLQ+REIER+GG++ I +N+RVI ATNR+L + + + +FR D++YRLNVFP+ + Sbjct: 447 QVKLLRVLQQREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPIAM 506 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 P LR+R EDI L HF R + I I AL LM + WPGN+RELENVIER+V Sbjct: 507 PALRERTEDIAPLVHHFIGYFGRKTGKNISGISDRALAMLMDYGWPGNIRELENVIERSV 566 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETN 635 LL +GNS++ +A+ P E ER I+ VL+ Sbjct: 567 LLAKGNSIDTVYLPAH-----------PAVEGIAKAGPPVLKNIFENERDHIISVLKACE 615 Query: 636 GIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 G ++G GAA L + TTL S+M++LGI Sbjct: 616 GRISGENGAAKILAIPPTTLSSKMKKLGIKK 646 >UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 Tax=Burkholderiales RepID=B1Y713_LEPCP Length = 593 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 166/591 (28%), Positives = 259/591 (43%), Gaps = 77/591 (13%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVL-GDHRKNEKFSLW 206 E+ + +I + + LD+ + GL+ V +V+ D R E Sbjct: 9 ERSHVELITIYEICRILGASLDIGRTFRASLNVLAAHLGLSRVMIVMAPDDRDGEARLRV 68 Query: 207 CSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCES 266 S + ++ + P + + ++ + Sbjct: 69 HSSVGLDQEQERRGQWHYGEGVIGHVYASGMPVVVPDVAQAAEFIDRTGAFGAQADRMMA 128 Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLF-SEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 +++PL G L S ++ ++L A +A A A ++T+ + Sbjct: 129 FVVVPLKTDRAVVGVLAAQREVSGGVRLSDDQRILTMAATLMAQA---ASLHGAVTEEHK 185 Query: 326 SLQQENHQLSEQL----LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 LQ E +L + L + +++ S+ M+ + +V A + +TVL+ GE+GTGK Sbjct: 186 RLQLETTRLQKALAPEPRGRYTLDNVVGVSRGMQQVFSEVHQAAPARATVLLRGESGTGK 245 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E IARA+H LSPR+D P +K+NCAA+ SLLESELFGH++GAFTGA +GRFE A G Sbjct: 246 EAIARALHYLSPRKDAPFIKVNCAALTESLLESELFGHERGAFTGAAGDRKGRFEQAHTG 305 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDE+GD+ Q KLLRVLQERE ER+GG+R I V+VR+I ATNRDL +MV+ ++R Sbjct: 306 TLFLDEVGDISASFQAKLLRVLQEREFERVGGNRAIKVDVRLICATNRDLEKMVKRGEYR 365 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 +DL+YR+NV + LPPLR+R +DIP L HF + + R + I +A+ L WP Sbjct: 366 ADLYYRINVVSIFLPPLRERRDDIPALVSHFVDRFNKENRRKL-RIAGDAMEVLSHCYWP 424 Query: 562 GNVRELENVIERAVLLT--------------------------RGNSLNLHLNVRQSRLL 595 GNVRELEN IER + + +++ + Sbjct: 425 GNVRELENCIERTATMANGDLIRGVSFPCRHNRCLTQTLHHLEKDDAVAPISMPTSLHIP 484 Query: 596 PTLNEDSALRSSMAQ--------------------------------------LLHPTTP 617 L + R Sbjct: 485 ARLPIRESPRPVPGSIPASAAAASADPDDDWLDDEADGGDDVLRIGPTEHLTGTPRQFGN 544 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 E + ER+R++ + + + AA L + L +++ I V + Sbjct: 545 EPPDGERERLIWAMEQCAWV---QAKAARLLHVTPRQLGYALRKYNIEVHK 592 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 168/476 (35%), Positives = 249/476 (52%), Gaps = 24/476 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D + L + + + ++T P D+ L Sbjct: 4 VLIVDDEEGVCEML----KDVLEDEGFEITLAYNAKDALKIMETEFPDTV--LLDIRLPD 57 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + ++ + + L T A+ + + + L D + +A Sbjct: 58 ADGIEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNL-----DELVLA 112 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 V + + L E L E+L + I QS+ M+D+ + + V SD Sbjct: 113 VQKSIKM-------QRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDI 165 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKEV+AR IH S R +P +KINCA IP L+ESELFGH+KG+FTGA++ Sbjct: 166 TVLIQGESGTGKEVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVS 225 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 G+FEIA G +FLDEIG+LPL Q KLLRVLQE+E ER+GG+++I V+VR++AATNR Sbjct: 226 QKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNR 285 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 +L MV++ +FR DL+YRLNV ++LPPLR+R EDI LL +F +K AR N+ I I Sbjct: 286 NLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQ 345 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN-EDSALRSSM 608 EA+ + WPGNVRE++NV E+AV++ R + L L L +++A S Sbjct: 346 EAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLD 405 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E E+Q I++ L E N A LG+ R +L ++M+ + Sbjct: 406 TNDKRSLKDIVAEVEKQVILKSLNENNWNRQN---TAKALGLNRRSLYAKMKEYDL 458 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 177/486 (36%), Positives = 260/486 (53%), Gaps = 23/486 (4%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D ++ + + A C + L+ + + D + + Sbjct: 9 ILVVDDEQDNLDAFRFNFKRAFRLLC-----ASSGEEALEILRDNEVAVI--VTDQRMPR 61 Query: 252 RDPLLLLLASNGCESALLIPLTFGNHTPGALL--LAHTSSTLFSEENCQLLQHIADRIAI 309 L LLL + + + + L+ + + + + + + + Sbjct: 62 MTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEA-KELRGILTH 120 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 A+ R L L++ L++++ G+II S A+ ++L +V+ VA ++S Sbjct: 121 ALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTNS 180 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVL+ GETGTGKE++A AIH S R ++P V++NCAA+ +LESELFGH+KGAFTGA+ Sbjct: 181 TVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVA 240 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 GRFE+ADGGTLFLDE GDLP+E+Q KLLR LQERE ER+GG++TI V+VRVI+ATNR Sbjct: 241 QRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATNR 300 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL M+E FR DL+YRLNVFP+ LPPLRDR ED+P L HF K AR + Sbjct: 301 DLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRG 360 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL----- 604 AL +L S+ WPGNVRELEN+IERA++L RG L+ R Sbjct: 361 AALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVISE 420 Query: 605 -----RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 + P + ER+ I+ + ++N +A AA LG+ R+TL RM Sbjct: 421 TASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIAS---AARMLGINRSTLYYRM 477 Query: 660 QRLGIS 665 ++ G+ Sbjct: 478 RKHGLE 483 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 165/475 (34%), Positives = 248/475 (52%), Gaps = 27/475 (5%) Query: 201 EKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPT-------LTHRADDLFLWQRD 253 + L D A H + L + G +T + D+ + Sbjct: 1 MRAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMG 60 Query: 254 PLLLLLASNGCESALLI-PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVG 312 + L A+ + +T + A+ + + + + L D + + V Sbjct: 61 GMEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDL-----DVMRLTVE 115 Query: 313 NADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVL 372 A L +EN L ++L + +II +S AM +L + +VA +++TVL Sbjct: 116 RALDHL-------RLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVL 168 Query: 373 ICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR 432 + GE+GTGKE++A+A+H SPR P+V +NCAA+ +LLESELFGH+KGAFTGA Sbjct: 169 VTGESGTGKELVAKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRRE 228 Query: 433 GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLW 492 GRF AD G++FLDEIG++ +Q KLLRV+QEREI+R+GG R + V+VR++AATNRDL Sbjct: 229 GRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLK 288 Query: 493 QMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEAL 552 + VE +FR DL+YRLNV + +PPLR+R +DIPLLA+HF + A + I A+ Sbjct: 289 KEVEAGRFREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAM 348 Query: 553 RQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNV----RQSRLLPTLNEDSALRSSM 608 L+ WPGNVRELEN +ERAV+L+ G + R++ + Sbjct: 349 DHLLRCPWPGNVRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAP 408 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + D+ ER+ I+ LR+T G AA LG+ R TL ++++ G Sbjct: 409 GDMAGLAGMALDDVEREVILATLRDTGG---NKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 181/614 (29%), Positives = 288/614 (46%), Gaps = 54/614 (8%) Query: 92 VLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDR 151 + + L + + + T+Q ++F + I+ +L S + ++ + R + Sbjct: 436 LYATVISLGSLLGTQLNRAPSTNQAVSVFLVMLFAISLLLWSR-DRIQRLIDRRFFRQKY 494 Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 + L + AV D + + + + ++ L + + + L + Sbjct: 495 QLDKALKRMNRAVGRLGDQRSIADRMLTSCREVLQVKNAAIYLLNPERTQFDLLTGFHIE 554 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 + A E + Q R L + P LL G + Sbjct: 555 NAPSAVPCGPELLEVLEGELAFQ--------RVATGLLKEASPAQQLLRLLGFDFIYN-- 604 Query: 272 LTFGNHTPGALLL-AHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 L G + L T+ + +S E+ L + +IA+ + + + L E ++ + Sbjct: 605 LELDGEFAGFVALGQRTTGSAYSAEDLTFLNAMGQITSIALHSTKIHQDLRRLNEEMRIK 664 Query: 331 NHQ----------LSEQLLSNLGIGD------------IIYQSQAMEDLLQQVDIVAKSD 368 + L +L ++ I + I S A+ +++ V VA S+ Sbjct: 665 VEKIDDQRRLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSPAIRSVMETVRKVANSE 724 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 STVL+ GE+GTGKE++A+A+H+ S R +KPLV++NCAA+ SLLESELFGH KGAFTGA Sbjct: 725 STVLVRGESGTGKELLAQAVHENSSRHEKPLVRVNCAALSPSLLESELFGHVKGAFTGAH 784 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 GRFE+A+GGTLFLDEIGD+ L+ Q KLLRVLQER ER+GGS T+ V+VR+I AT+ Sbjct: 785 EDRVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVGGSETLHVDVRLITATH 844 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 ++L Q + + FR DL+YRLNV + LPPLR+R EDI LA +F ++ A + + I I Sbjct: 845 QNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYFLKRTANRLGKRISHID 904 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 +A+ L WPGN+R+LENVIERAV+L + + + Sbjct: 905 PDAIEALERAPWPGNIRQLENVIERAVVLAESEVITMKDLPADLLEQKKRLPARVFETKN 964 Query: 609 AQLLHPTTPENDEEER-----------------QRIVQVLRETNGIVAGPRGAATRLGMK 651 + E E +++ L E +G AA LGM Sbjct: 965 VRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKLALAECDG---NKAQAARLLGMP 1021 Query: 652 RTTLLSRMQRLGIS 665 R+T S++++ I+ Sbjct: 1022 RSTYYSKLKKYDIT 1035 >UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Deltaproteobacteria RepID=C7LPL8_DESBD Length = 575 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 193/574 (33%), Positives = 291/574 (50%), Gaps = 35/574 (6%) Query: 107 THGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLS 166 T G+R + + + + ++ + +EE + LE R+ L D A Sbjct: 26 TAGTRSLLPEIEMKRLVQELEVHQVELEMQNEELRQTQEALETSRNAFAELYDFAPAGYF 85 Query: 167 HLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGES 226 D L+ V GL ++ K + +D + E Sbjct: 86 SFDPQGLVRSVNLLGAQLLGLEREHLL----GKPMSRWIPDADGRKVFSKHCADVLRREG 141 Query: 227 VLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA---LLIPLTFGNHTPGALL 283 + + RA+ + R + + G A +++ +T AL Sbjct: 142 NDICEIW-------LQRANGMKFHARLRSIAKESVEGTHGAIRSMIVDVTEEEKLKIALQ 194 Query: 284 LAHTSSTLFSEENCQLLQHIADRIAIAV--------GNADAWRSMTDLQESLQQENHQLS 335 AH E + L R+ + + A + + L++ LQ EN L Sbjct: 195 NAHGELEQKVMERTRELLLTNKRLVLEIGVRKDTEESLRMAIKEIKQLKDRLQAENIYLQ 254 Query: 336 EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 + G+II QS A+ + +++ +A ++TVL+ GETG GK V+ARAIH S R+ Sbjct: 255 HEAAQKFNFGEIIGQSSAIAHVFDKIEQIASQNTTVLLQGETGCGKGVVARAIHARSARK 314 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 D+ +V INC A+PA+L+ESELFG +KGAFTGA GRFE+ADGGT+FLDEIG++P+EL Sbjct: 315 DRAMVTINCTALPANLIESELFGREKGAFTGASARQMGRFELADGGTIFLDEIGEMPMEL 374 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q KLLRV+Q+ E ERLG RTI V+VR+IAA+NR L + +++ FR DL+YRLNVFP+ + Sbjct: 375 QCKLLRVIQDGEFERLGSPRTIKVDVRIIAASNRKLEEEIKNGSFREDLYYRLNVFPITI 434 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLR R +DI LL F K + + + I+ IP EAL L ++DWPGNVRELE+VIERA+ Sbjct: 435 PPLRARKDDIRLLVNFFVAKFNKKIGKKIETIPKEALEALENYDWPGNVRELESVIERAI 494 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETN 635 ++++G SL + ++ + ER I+ VL++TN Sbjct: 495 IISKGPSLQILDQF-------------NTSPKPSETSGADVKALVDLERDHIIHVLQKTN 541 Query: 636 GIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 V G GAA L + +TL +RM++ GI+ + Sbjct: 542 WRVEGKNGAAAILDINPSTLRARMRKFGINRNSI 575 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 165/478 (34%), Positives = 252/478 (52%), Gaps = 28/478 (5%) Query: 191 SMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLW 250 ++++ D KN L + Q L+ L D+ + Sbjct: 3 TILIVDDEKNYPPLLAAVLGDEG----YETLTANSGLEAIQILEGSDVDLV--LTDMKMP 56 Query: 251 QRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAI 309 D + L+ + L + + + + + + Q +++ + Sbjct: 57 GMDGMELMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQ-----NEQLIL 111 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 V A A + QEN L +L G+II +S AM ++ + VA +++ Sbjct: 112 FVKQALAMY-------RVVQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNA 164 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKE++A++IH S R+D P V +NCAA+ S+LESELFGH+KGAFTGA Sbjct: 165 TVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAA 224 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 +GRFE+ADGGTLFLDEIG++ LQ KLLRVLQE+ ER+GG + I V++R+IAATNR Sbjct: 225 MKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNR 284 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR--HMNRAIDAI 547 DL + VE+ FR DLFYRLNV P++LPPLR+R +DIPLL HF QK A + + Sbjct: 285 DLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKV 344 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 + R + WPGNVRELENVIERA++L ++++++ R+ T + + L Sbjct: 345 HPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAISVNDLPREL----TRSVSNTLHME 400 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + E+ I + + ++ + AA LG+ ++ L ++++ G+ Sbjct: 401 GIPVDATLYETLSMVEQAMIKRAMLMSDNV---QSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 168/478 (35%), Positives = 241/478 (50%), Gaps = 27/478 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D K+ +L + + + +P D+ + + Sbjct: 5 VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLI----RPHAV--LLDIRMPE 58 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + +L A + + L + T + + + + L D + Sbjct: 59 MDGIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINL-----DELLST 113 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A ++ G +I S AM+++ + + +A SD T Sbjct: 114 LEKATTVTEPLVTVG---------KGEIAPR--PGTLIGCSPAMQEVYKTIGRIADSDVT 162 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE++A AIH SPR+ KP VKI+C AIP +LLESELFGH+KGAFTGA Sbjct: 163 VLIQGESGTGKELVAEAIHYNSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTR 222 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G+FE+ADGGT+FLDEIGD+ LQ KLLR LQE+ ER+GG+ T V+VR+IAATN+D Sbjct: 223 KLGKFELADGGTVFLDEIGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKD 282 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + V+ FR DL+YRLNV ++LPPLR+R EDI LL +F R + + + Sbjct: 283 LEERVKSGLFREDLYYRLNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRS 342 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 L+ ++WPGNVREL NV ERAVL+ RGN + L A + + Sbjct: 343 VADILLQYNWPGNVRELRNVCERAVLMARGNVITPESLPEYL-LRAVRGRTEAWHPAEDR 401 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + P E ER I++ L E G A LGM RTTL ++M+ LGI+ E Sbjct: 402 GVLPLKEMVAEMERSAILRALEEYRG---NKTAVARALGMSRTTLYAKMKELGIADPE 456 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 172/530 (32%), Positives = 266/530 (50%), Gaps = 25/530 (4%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN 200 + + D +VL+ V +DLD + + I ++ L D + Sbjct: 15 PPLPAMPQAPSDVSQVLLPFGGLVGREVDLDAFLQTLMDRIAITLQADRGTLWLLDPARR 74 Query: 201 EKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLA 260 E FS S + + + + D + + Sbjct: 75 ELFSRAAHLPEVSQIR-----VKLGQGVAGTVAKAGHAINVPDPRGEQRFFAD--IDRMT 127 Query: 261 SNGCESALLIPLTFG-NHTPGALLLA-HTSSTLFSEENCQLLQHIADRIAIAVGNADAWR 318 S L +PL G G L + F++E+ Q L IA +++ A+ + ++ Sbjct: 128 GYRTTSLLAVPLRDGDGALYGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQSTSLYQ 187 Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 + +E Q+ II +S ++ + + V A +D+TVL+ GE+G Sbjct: 188 ELQRAKEQ---------PQVPVGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESG 238 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 +GKE+ ARA+H PRRD+P +K++CAA+PA+L+E+ELFGH++GAFTGA + G+FE A Sbjct: 239 SGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAA 298 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 GGT+F+DEIG+LPL +Q KLLRV+Q+RE ER+GG++ + V+VR++AAT+RDL +MV + Sbjct: 299 SGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEG 358 Query: 499 QFRSDLFYRLNVFPLELPPLRDRP-EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FR DL+YR+ V + LPPLR+R EDI LA+HF +AR + A+ +L Sbjct: 359 RFREDLYYRIKVVEVVLPPLRERGAEDIERLARHFVAAVARRHRLTPPRLSAAAVERLKR 418 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTT- 616 + WPGNVRELEN IE AV+L G L HL + +A + P Sbjct: 419 YRWPGNVRELENCIESAVVLCEGEILEEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLDA 478 Query: 617 --PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E ER+ I++VL G AA L + R TL +++ G+ Sbjct: 479 GLLPLAEVERRHILRVLDAVKG---NRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 166/475 (34%), Positives = 247/475 (52%), Gaps = 29/475 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D ++ + L+ + L +P + D+ + + Sbjct: 6 VLVVDDEESVRQFLY----DVLTEEKYQVATAANGLQCQDKLMQFKPDVL--ITDIRMPE 59 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 +D LL + + L T A+ + + + L D I A Sbjct: 60 KDGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFD-LDEFLDLIQRA 118 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V +D + QE ++ +II S +M ++ + + VA S++T Sbjct: 119 VAQSDTVATFPQAQE-------------PASSTGINIIGNSPSMRNVYKDIGRVADSNAT 165 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE++ARAIH S RR+ P +K+NCA +P SLLESELFG++KGAFTGA + Sbjct: 166 VLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSL 225 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+A GT+F DEIG++ L Q KLLR +QE+E +R+GG++TI VNVR++AATNR Sbjct: 226 KVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRK 285 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L Q V + +FR DLF+RLNV +E+PPLRDR EDIPLL HF K + N+ I E Sbjct: 286 LKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKE 345 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A++ L+ +DWPGNVRELENV+ER++++ RG + L + Sbjct: 346 AIKLLIGYDWPGNVRELENVVERSIIMARGAIIVPEDI-----QLGATVSQQPTELEILD 400 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + ER+ I++ L E N A L + R +L ++M+ LGI Sbjct: 401 ENLSLKQIISDVERKVILKALEENNWC---RTTVAKVLKINRRSLYAKMKELGIE 452 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 199/527 (37%), Positives = 287/527 (54%), Gaps = 28/527 (5%) Query: 164 VLSHLDLDDLIADVAREIHHFFGLASVSMVLGDH--------------RKNEKFSLWCSD 209 + ++ L+ + + +A + L + E L S Sbjct: 20 LAREHSVEGLLNLIVSRLAEQKRIALARIWLSQPTSECRGCSTQEVCQHQTECLKLVASR 79 Query: 210 LSASHCACLP--------RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 S+ + + MP + + T L + + + Sbjct: 80 GSSLTTPSITWTAVDGAFQYMPYSVRKVGRIAATGLAIEEPEI-QEPLPEWIARPEWVRA 138 Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 G PL G L + + EE L+ IAD A A+ A A+ + Sbjct: 139 EGIRGFAGQPLIHRGKVLGVLGVFARQ--IIGEECMGWLRMIADHAAAAIVTARAFAEIE 196 Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 L++ L+ EN L E++ + G++I QS A+ + QQ+D+VA +DS+VLI GE+GTGK Sbjct: 197 SLRKRLELENEYLREEVTGSGAFGELIGQSPALGTVSQQIDLVAPTDSSVLILGESGTGK 256 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E++AR IH+ S R ++PL+K+NCAA+P L ESE FGH KGAFTGA+ GRFE+ADGG Sbjct: 257 ELVAREIHRRSRRSNRPLIKVNCAAVPRELYESEFFGHAKGAFTGALRDRVGRFELADGG 316 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDE+G++PLELQ KLLRVLQE E+ER+G RT VNVR+IAATNRDL E +FR Sbjct: 317 TLFLDEVGEIPLELQAKLLRVLQEGELERVGEERTRKVNVRIIAATNRDLRMEAEAGRFR 376 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL+YRL+VFP+E+PPLR R ED+PLLA HF + AR + R + +++L +DWP Sbjct: 377 QDLYYRLSVFPVEVPPLRRRKEDVPLLASHFLRIAARKVGRPQPLLTLAIVQKLQQYDWP 436 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND- 620 GNVREL++VIERAV+ + L + + + PT + S S+ P + + Sbjct: 437 GNVRELQHVIERAVITSTNERLLIE-LPQTTGSKPTRSVKSPSNSTATSQEIPIRTDLEI 495 Query: 621 -EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 + E + I+ L+ T+G ++GP GAA LG+K TTL SR++ LGI Sbjct: 496 RQMEAENILAALQATHGKISGPGGAAALLGLKPTTLASRIKALGIKP 542 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 183/528 (34%), Positives = 292/528 (55%), Gaps = 25/528 (4%) Query: 144 LRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN-EK 202 ++ L++ + ++ +T + + LD L + G M++ D + N E Sbjct: 12 MKRLQEMQKEQLMISRLTKELSTILDKKQLQLVINTSFKTELGFND-CMMIRDIKGNIEI 70 Query: 203 FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 + + + + L R + L + + L + L ++ Sbjct: 71 LGIGTENQNHTTDQQLDRYVK-------NCLDSAELLLFDLKELSPLPS---CFTKAKNS 120 Query: 263 GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 G A+ + L + + L L + S ++L I+ +++I N D + Sbjct: 121 GMRMAVGLGLPAVSESKNVLFLFYKSFISRDTIPERILNGISTQLSITFHNIDVQEQLKT 180 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 Q +++ ++ E+ S G I+ QS+AM+ + +Q+ VA S S V+I GETGTGKE Sbjct: 181 FQGNIRDFPKEVKEEKKSEHGFHGIVGQSEAMQFIFEQITQVAPSQSNVIIFGETGTGKE 240 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 +IA+A+H+LS K +++INCAAIPA+L+ESELFGH+KG+FTGA +G+FE A T Sbjct: 241 LIAQAVHELSEFSGKKMIRINCAAIPANLIESELFGHEKGSFTGATEQRKGKFEQAHNST 300 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 +FLDEIG+LPLELQ +LLRVLQE+EIER+GG++ I VN R+I ATNR+L + V + +FR Sbjct: 301 IFLDEIGELPLELQARLLRVLQEKEIERIGGNKRIKVNARIITATNRNLEKEVAEGRFRL 360 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+YRLNVFP+ELPPLR+R EDIPLLA +F +K+ + I+ ++ +M+ W G Sbjct: 361 DLYYRLNVFPIELPPLRERKEDIPLLADYFLEKLYPKTGKKINGFSQNVVKMMMANPWLG 420 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 N+RELEN++ER++L +G+ + + T E E Sbjct: 421 NIRELENMVERSMLTAKGDIIREMDFPKVINYQNTDQEVQ-------------VKTLQEF 467 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 E++ I++++++ NG + G GAA LG+ TTL+S+MQ+LGI + Sbjct: 468 EKEYILKIIKKCNGRIFGEIGAAKLLGLPPTTLISKMQKLGIEKKHYF 515 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 159/518 (30%), Positives = 267/518 (51%), Gaps = 24/518 (4%) Query: 150 DRDHHRVLVDITNAVLSH-LDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 RD L++ + + S+ DL L+ + + S+++ + Sbjct: 8 KRDKLNTLINTSLLINSNYSDLSVLLEKIVESAMDVVEGDAASLLMLEPDGERLRFEIAI 67 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 + + + ++ + + + L + DP + + + + Sbjct: 68 GPKGIEAKKM---VLDLDGIAGWVIKYNRSAIINDV--LSDPRFDPTVQKVTGYKNRNMI 122 Query: 269 LIPLTFGNHTPGALLLA-HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 +P+ + G + + F ++ +L+ A + AIA NA + E Sbjct: 123 AVPMRIKDECIGVIEVLNKREEKDFDSDDLNVLELFATQTAIAYQNAKHY-------EKS 175 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 ++E L +QL + G I +S+ M + L+ +A SD++VLI GE+G GKE+IA Sbjct: 176 REEIICLQDQLEQDRGYHTFIAKSKVMNEKLELCRNIAASDASVLILGESGVGKELIAEQ 235 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 +H S R + P +++NCAA+P LLESELFGH +GAFT AI+ +GRFE+AD GT+FLDE Sbjct: 236 LHLNSRRVNNPFIRVNCAALPEGLLESELFGHVRGAFTDAISDRKGRFELADKGTIFLDE 295 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IGD+PL LQ KLLRVLQE ER+G ++T+ V+ R+IAATN+++ ++V +FRSDL+YR Sbjct: 296 IGDIPLTLQTKLLRVLQEMAFERVGSNKTLTVDTRIIAATNKNIEELVRQGKFRSDLYYR 355 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 LNV P+ +PPLR+R +DI LA F +K ++ + + +A + + ++ WPGN+REL Sbjct: 356 LNVLPIYIPPLRNRKDDIQELAHFFLKKFSKEVKKPFLGFSPDAEKLINAYSWPGNIREL 415 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 EN +ERA +L + + + + E S+ + ++ ++ I Sbjct: 416 ENAVERACVLGKPPYIEEKDLLLKF-------ESSSFEPEVNYSNPDLKSAVNDFKKSFI 468 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 V++L E AA +LG++RT L ++ L I Sbjct: 469 VKILNEHKW---NQTAAAEKLGIQRTYLSRLIKELEIK 503 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 167/518 (32%), Positives = 266/518 (51%), Gaps = 21/518 (4%) Query: 151 RDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDL 210 L ++ + + D D + + + + F + L D + L Sbjct: 14 EADLTFLSNMGDLLNEMEDPKDALEGILKNLCGFLKAFVGMITLHDRLSGMLMTSVSYGL 73 Query: 211 SASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 +A GE ++ + TR+P + ++ ++++ + L + Sbjct: 74 TAEE-KMKAIYQTGEG-IIGRVAATRKPAIISDISKDSVFLNRT--GIVSTERPMAFLCV 129 Query: 271 PLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 P+ N G L + + + ++L I I + + ++ Sbjct: 130 PVINKNELVGTLSIHKVNDRGMDFSYEEKILTIIGSLIGKHISVRRRHIEELEEL---RR 186 Query: 330 ENHQLSEQ-LLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 EN L Q + +++ S M +L V VA ++STV+I GE+G GKE+IA AI Sbjct: 187 ENQLLQSQSIEKPFRPDNMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAI 246 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H+ S R KP V++NC+A+P +L+ESELFG++KGAFTGA H GRFE+ADGGT+FLDEI Sbjct: 247 HKASSRIKKPFVRVNCSALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEI 306 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 D+P +Q KLLR+LQ+R+ ER+GG+ TI +VR++ ATNR+L +M+++ FR DL+YR+ Sbjct: 307 ADIPFSVQVKLLRILQQRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRI 366 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 +VFP+ +P LR+R DI +L HF QK+ + + I + AL LM + WPGNVRELE Sbjct: 367 HVFPIYVPALRERRADITILTDHFIQKINKQNQTNVKRITSGALDMLMMYSWPGNVRELE 426 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 NVIERA++LT + ++ + + SS + + ERQ I+ Sbjct: 427 NVIERAMILTTDDVIHSYNLPPSLQ---------TGVSSDTVKVGRLDLVLGKVERQMIM 477 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 L G VA +A +LG+ + R++R I+V Sbjct: 478 DTLIANRGNVA---KSAFQLGISERVMGLRIKRYNINV 512 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 176/523 (33%), Positives = 257/523 (49%), Gaps = 19/523 (3%) Query: 151 RDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDL 210 + I+ + + + +V +H+ + + L D ++ Sbjct: 17 SQQFTAMQRISVVLSRATEASKTLQEVLSVLHNDAFMQHGMICLYDSQQEILSIEALQQT 76 Query: 211 SASHCACLP--RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 R PGE L+ L Q + R D + L L + + Sbjct: 77 EDQTLPGSTQIRYRPGEG-LVGTVLAQGQSLVLPRVADDQRF----LDRLSLYDYDLPFI 131 Query: 269 LIPLTF-GNHTPGALLLAHTSSTLF-SEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 +PL + G L + + L+ +A+ IA + S + Sbjct: 132 AVPLMGPHSRPIGVLAAHAMARQEERLPACTRFLETVANLIAQTIRLMILPTSAAQAPQQ 191 Query: 327 LQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIAR 386 + + G+ +++ +S AM ++ + V++ D+TVL+ GE+GTGKE+IA Sbjct: 192 SPRIERPRACTPSRGFGLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIAN 251 Query: 387 AIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446 AIH SPR VK NCAA+P +LLESELFGH+KGAFTGA+ +GRFE+ADGGTLFLD Sbjct: 252 AIHHNSPRAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLD 311 Query: 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506 EIG+ Q KLLR+LQE E+ER+GG T+ VNVR+IAATNR L + V FR DL+Y Sbjct: 312 EIGESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYY 371 Query: 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566 RLNV P+ LPPLR+R EDI LA +K+A R + I A+R LM + WPGNVRE Sbjct: 372 RLNVMPIALPPLRERQEDIAELAHFLVRKIAHSQGRTL-RISDGAIRLLMEYSWPGNVRE 430 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 LEN +ER+ +L+ ++ + + R P AL SS D ERQR Sbjct: 431 LENCLERSAVLSESGLIDRDVILFNHRDNP----PKALASSGPAEDGWLDNSLD--ERQR 484 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 ++ L + + AA LGM + R+Q + I++ + Sbjct: 485 LIAALEKAGWV---QAKAARLLGMTPRQVAYRIQIMDITMPRL 524 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 184/493 (37%), Positives = 253/493 (51%), Gaps = 44/493 (8%) Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 H +P L+ Q +PT +D + PL Sbjct: 115 RHTEGTYAMVPLSEPLVGQVALRGEPTWAASPEDWARP------AWAVDESIHAYAAYPL 168 Query: 273 TFGNHTPGALLLAHTSSTLFSEENCQLL-----QHIADRIAIAVGNADAWRSMTDLQESL 327 F + G + + + + LL + AD ++ AV NA ++ + L+ +L Sbjct: 169 QFKGNMIGVMAVFYDRPMRGVLADLMLLHRKMHKIFADSLSAAVVNARSFEEIQHLRRAL 228 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 + EN L ++ I+ S + L+QVD+VA +D+TVL+ GE+GTGKE++A+A Sbjct: 229 ELENEHLRGEVRRARAPHSIVGDSPPLRRALEQVDMVAPTDATVLLLGESGTGKELVAQA 288 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH S R PLV++NC+AIP L ESE FGH KGAFTGA+ GRF++ADGGTLFLDE Sbjct: 289 IHDRSQRAAAPLVRVNCSAIPRELFESEFFGHVKGAFTGALRDRVGRFQLADGGTLFLDE 348 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 +G++PLELQ KLLRVLQE ER+G R+ V+VR+IAATNRDL VE +FR DLF+R Sbjct: 349 VGEIPLELQGKLLRVLQEGVFERVGEERSRSVDVRIIAATNRDLRADVEHGRFRQDLFFR 408 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 L+VFP+ LPPLR R +DIPLLA+HF + R +N I + +L S+ WPGNVREL Sbjct: 409 LSVFPVALPPLRARRDDIPLLARHFVRASCRRLNLPEPRIAHRQMAELQSYPWPGNVREL 468 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP------------- 614 +NVIER V++ G L L L + + + + Sbjct: 469 QNVIERGVIMAEGGRLVLDLPPEGGMQAVSPGAAFGMPGGASPVEGGGAHDAPWGTGETG 528 Query: 615 --------------------TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTT 654 + E +R I + L G V GP GAA LG+ TT Sbjct: 529 SAGKTADFGQTGAPDPAGIISEAHWRELQRANIERALTAAGGRVHGPGGAAELLGLPPTT 588 Query: 655 LLSRMQRLGISVR 667 L SRM+ LG+ R Sbjct: 589 LQSRMKTLGLRGR 601 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 250/481 (51%), Gaps = 23/481 (4%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D L + G + + L+ L D + Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQV----FTAGNGLHALKVLEQEDIDLV--ISDWRMPG 58 Query: 252 RDPLLLLLASNGCESALLIP-LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D LL L + +T + A+ + + + + D + I Sbjct: 59 MDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDI-----DELDIT 113 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V A +R + +N ++ +L + I ++ S A +LQ VD V +S++T Sbjct: 114 VSKALQFRDILK-------DNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNAT 166 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 +L+ GE+GTGKE++ARAIH+ R DKP V +NCAAIP LLESE+FGH KGAFTGA+ Sbjct: 167 ILLTGESGTGKEMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVAD 226 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRF+ AD GTLFLDE+GD+PL LQ K+LR LQER IE +G R V+VRVIAATN++ Sbjct: 227 RVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKN 286 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + V +++FR DL+YRLNVFP+ LP LR+R EDI LLA+HF + + I E Sbjct: 287 LLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPE 346 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS-MA 609 AL+ + S+ WPGN+REL+N +ERA ++ G + +S+ S Sbjct: 347 ALQAMASYAWPGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGP 406 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 Q+ E E+ I+ L+++NG+ AA +G+ + R+++LGI V ++ Sbjct: 407 QVPSDLEAALAEVEKAYILAALQQSNGV---QAAAAQLIGISERSFWYRLKKLGIQVDKI 463 Query: 670 L 670 + Sbjct: 464 V 464 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 183/581 (31%), Positives = 279/581 (48%), Gaps = 53/581 (9%) Query: 102 LRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQV------ALRLLEKDRDHHR 155 + G + S+ P L S + + + L + + + Sbjct: 101 FEALVERGLKGNSKAELALQTGGENTAPALLSISTLQHTDMPAVVCMVVTDLTEQKRNEE 160 Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L + + L + + F VL D + + + Sbjct: 161 MLAE-----------EKLTTQILNQAAEIF-------VLCDPQGRILRASQSTSSLFGRS 202 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL--LIPLT 273 +L P + A + N S L PL Sbjct: 203 PLFQVFDEAFHLLYPD----GMPFILLPAMSGKFLHAVEVNFKHGDNETYSFLLSANPLI 258 Query: 274 FGNHTPGALLLA-----HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 G +++ +++ L+ + + A + L++ L+ Sbjct: 259 THKGAIGIVVVMVDITERRKMEDSRQKDHDKLEQQVEE--RTLELRTALSEIKTLKDRLE 316 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 EN L + I+ QS +++ +L + + VA +++TVLI GETGTGKE+IA AI Sbjct: 317 AENIYLRHENKRRHHFAQILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELIAFAI 376 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H +SPR+++P++ +NCAA+P +L+ESELFG +KGAFTGA GRFE+A+G TL LDEI Sbjct: 377 HDMSPRKERPMITVNCAALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLCLDEI 436 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+LPLELQ KLLRV+Q E ERLG TI V+VR++A TNR+L + + + +FR DL+YRL Sbjct: 437 GELPLELQAKLLRVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDLYYRL 496 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 NVFP+ +PPLR R EDIPL+ F ++ +R + + I +I EA++ L + WPGNVRELE Sbjct: 497 NVFPITVPPLRQRKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKALQDYPWPGNVRELE 556 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 ++IERAV+L G L L + S + T +E ER +I+ Sbjct: 557 SIIERAVILCPGPVLQLADKLEIS----------------SPAFSSTVRTLEETERDQIL 600 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 ++L ET + G GAA LG+ +TL +RM +LGI E Sbjct: 601 KILSETRWRIEGKNGAAAILGIHPSTLRARMHKLGIVRPET 641 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 175/430 (40%), Positives = 255/430 (59%), Gaps = 19/430 (4%) Query: 248 FLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRI 307 L + L I L + T G L + L ++ + Sbjct: 58 RLPLSADAHVPAGEASEHEVLAIALHDESGTWGHLRFYSDREAISPAIPMALPDQVSSVV 117 Query: 308 AIAVGNA-------DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 ++A+ N + Q L+++N L E+ DII S M+ + Q Sbjct: 118 SLAIANIVSTEKLSRQLEEIKHYQSQLEEQNAYLLEEAKEGFSYDDIIGSSGPMQRVFQL 177 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 + V+ ++STVL+ GETGTGKE++ARAIH S R+D+ +V++NCAAIPA L+ESELFGH+ Sbjct: 178 LSQVSFTNSTVLLLGETGTGKELVARAIHNSSARKDRLMVRVNCAAIPAHLIESELFGHE 237 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KG+FTGA G+FE+A+ TLFLDEIG++PL++Q KLLR +QEREIER+GG I V+ Sbjct: 238 KGSFTGAFERRIGKFELANQATLFLDEIGEMPLDMQAKLLRAIQEREIERIGGKGVIKVD 297 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VR+IAATNR+L + V+ +FRSDLFYRL+VFP+ LPPLR+R DI LLAK F + A++ Sbjct: 298 VRIIAATNRNLLEEVQQGRFRSDLFYRLHVFPITLPPLRERTGDISLLAKQFVGRFAKNN 357 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 ++I I + ++ L+++ WPGNVRELE+ +ER VLL R + + L Sbjct: 358 GKSISRISSNVMKALLAYPWPGNVRELEHQMERCVLLARDHVIRDVLLP----------- 406 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 S +S A T ++E ER+ I++VL + NG + GP GAA L +K TL S+++ Sbjct: 407 -SPTQSGHAPAAGIYTKTHEENEREYIIRVLNQCNGKIYGPGGAAQLLNLKVGTLNSKIK 465 Query: 661 RLGISVREVL 670 +LGIS +++ Sbjct: 466 KLGISKEQII 475 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 177/479 (36%), Positives = 246/479 (51%), Gaps = 25/479 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D N + L + P + D+ + + Sbjct: 7 ILIVDDEDNVRRMLSTAFALQG----FETHCANNGRTALHLFADIHPDVV--LMDIRMPE 60 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + L E+ + L A+ + + + L D + + Sbjct: 61 MDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDL-----DELNLI 115 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V A +S+++E L + L ++ G I+ S AM D+ + +A S ++ Sbjct: 116 VQRALQL-------QSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQAS 168 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IARAIH S R P +K+NCAA+P SLLESELFGH+KGAFTGA Sbjct: 169 VLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G FE A+ GTL LDEIG++PL LQ KLLR+LQERE ER+GG +TI V++R+IAATNRD Sbjct: 229 RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L MV++ FR DLFYRLNV L LPPLRDR EDI LLA HF QK + R I I Sbjct: 289 LQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM 348 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L +W WPGN+REL NVIERAV++ G + Q R ++ + Sbjct: 349 AMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQP---VCNAGEVKTAPV 405 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 E E++ I++VL + G A LG+ R L+ ++Q GI +V Sbjct: 406 GERNLKEEIKRVEKRIIMEVLEQQEG---NRTRTALMLGISRRALMYKLQEYGIDPADV 461 >UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF2_9DELT Length = 554 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 178/547 (32%), Positives = 281/547 (51%), Gaps = 5/547 (0%) Query: 121 NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVARE 180 + L+ I P+ + L + ++ D + + T + LDL + + Sbjct: 12 SRLSCINEPMSTALLCRPLILNIYKTRDQPMDQNIFFREATMRICGSLDLQKAMQNTLEF 71 Query: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 I + ++++ L D S+ + MP V +P Sbjct: 72 ISSYIPADALNIGLIDPEPGVARSVVHISPDDWPESRSTVSMPQNIVSKFTREWESKPGF 131 Query: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLL 300 D L+ S L L + G LLL +++E+ +++ Sbjct: 132 RILNDISLEEPAVQELIRAFWPEDVSLLRTDLALESRRMGLLLLVAEGKNRYTKEHARIM 191 Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 + ++A+ NA + L+ L+ N L +L I+ + +++ Sbjct: 192 SSLNKPFSVALANALQYEEAIQLKNMLEDYNRDLRSELSGLSADNRIVGAEFGLRQVMRM 251 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 V VA +S VL+ GETGTGKE+ A A+H S R D P +K+NC +P SL++SELFGH+ Sbjct: 252 VRQVAPLESPVLLQGETGTGKEIFANALHAASLRSDGPFIKVNCGGLPESLVDSELFGHE 311 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGAI+ +RGRFE AD GT+FLDEIG+LPL +Q KLLRVLQ+ EIER+GGSRTIPV+ Sbjct: 312 KGAFTGAISRNRGRFERADKGTIFLDEIGELPLNIQAKLLRVLQQNEIERVGGSRTIPVD 371 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 VR+I+AT+R+L QMV+ +FR DL++RLNVFP+ +PPLR RP+D+P L H + R M Sbjct: 372 VRIISATHRNLEQMVQRGEFREDLWFRLNVFPIMIPPLRQRPQDLPALLDHLVSRKCREM 431 Query: 541 NRAID-AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN 599 + IP+ + +L WPGNVREL+N++ER ++ ++ + + ++ Sbjct: 432 KITREIRIPSGTMDRLKKRAWPGNVRELQNLVERTLIQAHADNPDSAVLNLDL----AVS 487 Query: 600 EDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 ++ +++ + +E + I + L G + GP GAA LG+ +TL +M Sbjct: 488 GQKSIETNLETSGNTQVLTFEEAAARHIKKALEVARGKITGPGGAAEILGLNPSTLRGKM 547 Query: 660 QRLGISV 666 ++L IS Sbjct: 548 RKLNISP 554 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 164/473 (34%), Positives = 252/473 (53%), Gaps = 31/473 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D N + ++ + + + + + + D+ + Q Sbjct: 6 ILVVDDEDNARRAIATILNEEGY------EVAEAANGAEALARIGEFSPAVVLTDVRMPQ 59 Query: 252 RDPLLLLLASNGCES-ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D L LL + S A + +T A+ + + F + AD++ + Sbjct: 60 MDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLD-----ADQVLVT 114 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 +G + SL+QE L +Q+ S DII +S ++ + + A + + Sbjct: 115 LGKVL-------EKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRA 167 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKE+IA+A+HQ SPR+DKP ++++CAA+ +LLESELFGH+KG+FTGA+ Sbjct: 168 TVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALA 227 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 GRFE+ADGGTLFLDEIG++ +Q KLLRVLQ+RE ER+GG++T+ V+VR++AAT+R Sbjct: 228 RKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHR 287 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 DL V+ +FR DL+YRLNV + LPPLRDR D+P L HF +K + + + + Sbjct: 288 DLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAP 347 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 L+ L+S DWPGN+RELEN IERAV+L +G L+ R + A Sbjct: 348 GTLQALLSHDWPGNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGA 407 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 ER+ I++ L G + AA LG+ + R++ Sbjct: 408 --------TLAAIEREAILRTLEMVQGSTS---RAAEVLGISVRKIQYRLKEY 449 >UniRef50_P05407 Nif-specific regulatory protein n=11 Tax=Rhizobiales RepID=NIFA_BRAJA Length = 582 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 172/573 (30%), Positives = 279/573 (48%), Gaps = 50/573 (8%) Query: 139 EQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHR 198 E + A + +I+ + + L+ +A+V + F + + L + Sbjct: 16 EPERAPPGEPSHESALAGIYEISKILNAPGRLEVTLANVLGLLQSFVQMRHGLVSLFNDD 75 Query: 199 KNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLL 258 + S C+P ++ + + + T + + + +L Sbjct: 76 -GVPELTVGAGWSEGTDERYRTCVPQKA--IHEIVATGRSLMVENVAAETAFSAADREVL 132 Query: 259 LASNGCE-SALLIPLTFGNHTPGALLLAH--TSSTLFSEENCQLLQHIADRIAIAVGNAD 315 AS+ + + +P+ + G L + S+ E + +LL +A+ I + Sbjct: 133 GASDSIPVAFIGVPIRVDSTVVGTLTIDRIPEGSSSLLEYDARLLAMVANVIGQTIKLHR 192 Query: 316 AW----RSMTDLQESLQQEN--HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 + ++ L+++ + L II S A+ LL+++ +VA+S+S Sbjct: 193 LFAGDREQSLVDKDRLEKQTVDRGPPARERKQLQAHGIIGDSPALSALLEKIVVVARSNS 252 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVL+ GE+GTGKE++A+AIH+ S R +P VK+NCAA+P ++LESELFGH+KGAFTGA++ Sbjct: 253 TVLLRGESGTGKELVAKAIHESSVRAKRPFVKLNCAALPETVLESELFGHEKGAFTGAVS 312 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 +GRFE+AD GTLFLDEIG++ Q KLLRVLQE+E ER+G + TI V+VRVIAATNR Sbjct: 313 ARKGRFELADKGTLFLDEIGEISPPFQAKLLRVLQEQEFERVGSNHTIKVDVRVIAATNR 372 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 +L + V +FR+DL+YR++V PL LPPLR+R DIPLLA+ F +K R++ + Sbjct: 373 NLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAREFLRKFNSENGRSL-TLEA 431 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN--------------------- 588 A+ LMS +PGNVRELEN IER L+ G S+ Sbjct: 432 SAIDVLMSCKFPGNVRELENCIERTATLSAGTSIVRSDFACSQGQCLSTTLWKSTSYGKT 491 Query: 589 ---------VRQSRLLPTLNEDSALRSSMAQLLHPTTPEN----DEEERQRIVQVLRETN 635 +S + L P+ +R+R+V + ++ Sbjct: 492 DPAAPMQPVPAKSIIPLAETAPPPQAVCEPGSLAPSGTVLVSGARMADRERVVAAMEKSG 551 Query: 636 GIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + AA LG+ + +++ GI ++ Sbjct: 552 WV---QAKAARLLGLTPRQVGYALRKYGIEIKR 581 >UniRef50_Q2IQU1 Transcriptional regulator, NifA subfamily, Fis family n=4 Tax=Anaeromyxobacter RepID=Q2IQU1_ANADE Length = 562 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 195/529 (36%), Positives = 286/529 (54%), Gaps = 12/529 (2%) Query: 136 NDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLG 195 + + L ++ +D H R++ + VLS +DL ++ R + FG V++ Sbjct: 35 HRSMVGIGLPVVGQDDVHRRIVEEAIELVLSTVDLQAVLERTGRLLRRHFGETRVAINRL 94 Query: 196 DHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD-LFLWQRDP 254 + + + P + L R P + W+ +P Sbjct: 95 SAEDPTRAEVVLVSDPRQPSPEVGTSFPLAGSAAGEALAKRLPCVVDPLRPREPRWREEP 154 Query: 255 LLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNA 314 L LA+ G S + PL F N G L +AH + + ++ + +A +AIA+ N+ Sbjct: 155 L---LAAYGYGSLVSFPLVFENELLGTLDIAHPPAEGLLDCCFEVARQVAHLVAIALHNS 211 Query: 315 DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 + L L +EN L E++ + +S+ M ++++V +VA S +TVL+ Sbjct: 212 LMVEEVQRLNRLLGRENALLKEEIRQIKRDSRYVAESEGMRAVVERVRLVAPSTTTVLVR 271 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GETGTGKE +AR +H+ SPR + P V N AIP L+ESELFGH+KGAFTGA GR Sbjct: 272 GETGTGKEGLARMVHEFSPRFNAPFVAANLGAIPEGLIESELFGHEKGAFTGATRRRAGR 331 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 FE ADGGTLFLDE+GD P +Q +LLRVLQER +ER+GG+ + V+VRVIAATNR+L +M Sbjct: 332 FEQADGGTLFLDEVGDAPPSVQVRLLRVLQERVVERVGGTEPVKVDVRVIAATNRNLEEM 391 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 V FR+DL+YRL VFP+ELPPLR+R ED+ L +F K A M+R + + R Sbjct: 392 VARGTFRADLYYRLAVFPIELPPLRERREDVRPLGTYFLAKQAALMHRRPPRVGEDVWRA 451 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 L ++ WPGNVRELEN ++RA++L+ G L+L S L +A + + Sbjct: 452 LEAYGWPGNVRELENFLQRALILSPGQDLSLPALPTSSALASPAAAAAAEPAPPGR---- 507 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 D+E R+ I + L G V GP GAA LG++ TTL +M++ G Sbjct: 508 ----FDDEVRELIERALEHAGGRVYGPGGAAALLGLRPTTLQGKMKKYG 552 >UniRef50_C5S9Z4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9Z4_CHRVI Length = 552 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 196/573 (34%), Positives = 300/573 (52%), Gaps = 34/573 (5%) Query: 105 IRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAV 164 + + + + + + ++ L + R+L D++ A+ Sbjct: 1 MTKNANPGSGITSDAARPASGVPPFMVDR---RRPSNATEVSLAERLAFERLLGDLS-AL 56 Query: 165 LSHLDLDDLIADV---AREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRC 221 ++L + +IA++ + F G S + L + L Sbjct: 57 FANLPPERVIAEIEAALARLVDFLGFDRSSFGEFRDEDSPIEVLCSVARNGIETTPLGVG 116 Query: 222 MPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGA 281 +P L++ Q + + + +G S L IPL G G Sbjct: 117 LPLP--WYFGALRSGQLLVLPDLPADLPPEAEIEAEFSRQSGLRSNLSIPLRVGGRVMGV 174 Query: 282 LLLAH-TSSTLFSEENCQLLQHIADRIAIAV-------GNADAWRSMTDLQESLQQENHQ 333 + + + + E+ L+ + + A A+ A A +T L+E L+ EN Sbjct: 175 IAFSAFHRTRAWPEDLIVRLKIVGEVFAQALARSRRETELAAALAEITRLKERLEAENSY 234 Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L + + +S +L ++ A +++TVL+ GETGTGKEV+A +H LS Sbjct: 235 LRQS-GCARPAQMLASRSPRFNQVLDEIAQAAPTNATVLLLGETGTGKEVLADTLHALSQ 293 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 RR++PL+K+NCAA+PASL+E+ELFG +KGA+TGA+ GRFE+ADGG+LFLDE+G+LPL Sbjct: 294 RRERPLIKVNCAALPASLIETELFGREKGAYTGALARQPGRFELADGGSLFLDEVGELPL 353 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 ELQ KLLRVLQ+ ER+GG+RTI V+VR+IAATNR+L + V+ FR DLFYRLNVFP+ Sbjct: 354 ELQAKLLRVLQDGVFERVGGTRTIRVDVRLIAATNRNLARAVQAGGFREDLFYRLNVFPV 413 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 LPPLR+R EDIP LA F + + M + I+ + ++++ L+ + WPGNVREL N+IER Sbjct: 414 TLPPLRERREDIPWLAWEFIKHFSDSMGKPIEHVAEDSMQALLDYHWPGNVRELRNLIER 473 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 A++L RG +L++ L + T + ER I+Q+L + Sbjct: 474 AMILARGPTLHVAL----------------ECAPATTTRPTATDTLADNERAHILQILEQ 517 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 T+ + G GAA RLG+K TTL SRM+RLG+S Sbjct: 518 THWRIRGAGGAAERLGLKPTTLESRMKRLGLSR 550 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 163/451 (36%), Positives = 242/451 (53%), Gaps = 13/451 (2%) Query: 144 LRLLEKDRDHHRVL--VDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE 201 + + + +L +++ + S LDL + +V R + + + + L N Sbjct: 2 PGAMRQSTSNLELLTIYEVSKILGSSLDLQQTLREVLRALAYQLQMHRGRVYLV-GEDNV 60 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 + + LS A + + + L+T P + + L+ Sbjct: 61 LRLVAANGLSNEAAAQIE--FRDGEGITGRILKTGMPAVVPNLAEEPLFLNRTGGREDLD 118 Query: 262 NGCESALLIPLTFGNHTPGALLLAH---TSSTLFSEENCQLLQHIADRIAIAVGNADAWR 318 S + +P+ G L + + + L +A+ I V R Sbjct: 119 EQVASLVGVPIKAAGVVVGVLTIDRISDEGPQGHFGSDVRFLTMVANLIGQTV---RLHR 175 Query: 319 SMTDLQESLQQENHQLSEQLLS-NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 ++ + + + +E ++ ++L I D++ S M +++ QV VA STVLI GE+ Sbjct: 176 TVAEERRFMMRETFRMQKELRPVAAPINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGES 235 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE+IARAIH +SPR+D P +++NCAA+P SLLESELFGH+KGAFTGA H+GRFE+ Sbjct: 236 GTGKELIARAIHNMSPRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFEL 295 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 A GGTLFLDEIGD+ Q KLLRVLQE+E ER+GGS+TI +VR+I ATN +L + V Sbjct: 296 ASGGTLFLDEIGDISPNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGH 355 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FR+DL++R+NV + LPPLR+R +DI LA+HF K A+ A+ + EAL L Sbjct: 356 GKFRADLYFRINVVTIHLPPLRERRQDIGPLARHFVAKFAKDNGMALV-MEDEALEVLNR 414 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLN 588 WPGNVRELEN IERA +R + Sbjct: 415 CTWPGNVRELENCIERAATQSRDGIIRTESL 445 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 7/88 (7%) Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE----RQRIVQVLRETNGIVAG 640 L + S A DE E R R++ + T + Sbjct: 540 PPDPACPCPSRAPLPPQAPPPSPAAAPPPAAEVPLDEPESGSLRDRLLWAMERTGWV--- 596 Query: 641 PRGAATRLGMKRTTLLSRMQRLGISVRE 668 AA LGM + +++ I ++ Sbjct: 597 QAKAARLLGMTTRQVSYALRKYNIEIKR 624 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 164/552 (29%), Positives = 263/552 (47%), Gaps = 51/552 (9%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 L +I+ + + ++ LI V + F L + D + + + Sbjct: 27 LYEISKILCAPMETVTLIKRVISVLESFIDLDHAIIAFFDEDQEAEILVGAKSDQQGAKI 86 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN 276 ++ Q + + P + + + N + +P+ + Sbjct: 87 YFDSI---PEQIVGQIVTGKMPVIIRDISKDPYFSNSRSHIWH-INQKSCVIGVPILDRD 142 Query: 277 HTPGALLLAHTSSTLFSE-----ENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 G LL+ + E + +LL +A + A + + E L +++ Sbjct: 143 KVSGILLIDRPTPRNEREALAPDRDARLLSMVAALLG---QTARLHQMIRREHEFLLRQS 199 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 + Q ++ II S + +L++++++AK++ TVL+ GE+GTGKE+ A+AIHQ Sbjct: 200 SHTAPQQAEDMPHPRIIGDSPIIRSILEKINLIAKNNVTVLLRGESGTGKELFAQAIHQA 259 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 SPR+ P +K+NCAA+P S+LESELFGH+KGAFTGA +GRFE+ADGGTLFLDEIG++ Sbjct: 260 SPRKGLPFIKLNCAALPESVLESELFGHEKGAFTGAAQMRKGRFELADGGTLFLDEIGEI 319 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 Q KLLRVLQE E ER+GG++T+ VNVRVIAATN +L + V FR+DL+YRL+V Sbjct: 320 SPNFQAKLLRVLQEGEFERVGGTKTLKVNVRVIAATNVNLEEAVSRGNFRADLYYRLSVI 379 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ LPPLR+ P DIPLLAK F + N+ I AL L +PGN+RELEN I Sbjct: 380 PIFLPPLREHPSDIPLLAKEFLRHFNLE-NKTHLTIDQNALDVLSHCYFPGNIRELENCI 438 Query: 572 ERAVLLTRGNSLNLHLNV-----------------------------------RQSRLLP 596 R L R + ++ Sbjct: 439 RRTATLARNTEITAEDFTCYNDNCLSSIFWHREEEKTPHVCKNHGSEGEISECPSAQHCQ 498 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 + + ++ +A TT ++++++ + + + AA LGM + Sbjct: 499 AASNAESDKTDLAFPKEKTTQSEFRSQKEQLIDAMEQAGWV---QAKAARILGMTPRQIG 555 Query: 657 SRMQRLGISVRE 668 +++ GIS+++ Sbjct: 556 YALRKNGISIKK 567 >UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator, putative n=9 Tax=Shewanella RepID=A8FQ36_SHESH Length = 518 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 166/518 (32%), Positives = 269/518 (51%), Gaps = 8/518 (1%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 + + T + S L L++ + I + + + + + Sbjct: 7 HSEESMEKFYYKATQCLCSSLQLEESLQSYFDYIKSHLPIDGIYLNIYRPD--FSDIQFI 64 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 + ++ + L R +P + + + LQ + +D+ L + +S Sbjct: 65 AQVNDQQSSTLDRRIPISNEM-CEALQDLDRPIIRIVNDIELDTVTQFVAPQVIPEIKSV 123 Query: 268 LLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 +L+ + GN G + + +F + +L+ ++ R++ E+L Sbjct: 124 ILLRMVSGNTHLGVVGFYAKQAGVFRPRHVDMLEPHMQTFSLITAFNLKGRNLLRANEAL 183 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 ++N L L ++ ++ ++QQV+ +AK ++TVL+ GETG GKEVIA A Sbjct: 184 AEQNQSLKRTLN---ICNGVVGAHSGLKHVMQQVESIAKLNTTVLMLGETGCGKEVIANA 240 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH+LS R +KP +K+NC AIP SL++SE+FG+++GAFTGA + G FE A+GGT+FLDE Sbjct: 241 IHELSLRANKPFIKVNCGAIPESLIDSEMFGYERGAFTGAESRKAGYFEQANGGTIFLDE 300 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IG+LPL +Q +LLRVLQ I R+GG ++ +++RVIAAT+R+L MV +FR DL+YR Sbjct: 301 IGELPLSVQVRLLRVLQNSTITRVGGHDSVQLDIRVIAATHRNLKAMVSTGEFREDLWYR 360 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRE 566 L +FP+E+P LR R DIPLL +HF + ++ N+ + + E L L + WPGNVRE Sbjct: 361 LAIFPIEIPSLRQRRTDIPLLVQHFIEMLSAKFNQDQLPRVAPEQLAILSQYHWPGNVRE 420 Query: 567 LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQR 626 L NV+ERA++ LN V + + + + P + R+ Sbjct: 421 LINVLERAIIQHPKGPLNFDFLVPEVKAEHKEKRGETIIVDPSHATDKLVP-LETMTRKY 479 Query: 627 IVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 I LR T G + GP GAA L + T+ S+M++LGI Sbjct: 480 IEHALRVTGGKLYGPGGAAQLLDINPNTMRSKMKKLGI 517 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 165/533 (30%), Positives = 261/533 (48%), Gaps = 38/533 (7%) Query: 149 KDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 + + + L I + + + + R + +V+ D Sbjct: 59 RLQPYLGTLQRIVSDMGPQRPFQSSLKSLLRTLAENHHFKRPHLVIFDPETQTLKLSLTH 118 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 D + + PG V Q + QP + R D + + Sbjct: 119 DPTKAQDV---EYSPGVGVT-GQVFSSGQPVIVPRMKDHPSFLNKAFGRSEEELATLGFI 174 Query: 269 LIPLTFGNH------TPGALLLAHTSST-LFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 +P+ G L + + E C+ LQ +A IA Sbjct: 175 CVPVLGPGEEASPREVIGTLSVDTPITDLPSLEGQCRFLQVVAGMIA---------NQAA 225 Query: 322 DLQESLQQENHQLSEQL------LSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 LQE + ++ H +++ L + + +I+ S++M +L QV V S +T L+ G Sbjct: 226 YLQEEMARQKHMMTQGLIGGDVAENTVQAANIVAASKSMRLVLNQVAQVGPSRATALLRG 285 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 E+GTGKE++A AIHQ SPRRD PL+K+NCAA+P+ L+ESELFG+ KGAFTGA+ +G F Sbjct: 286 ESGTGKELLAEAIHQASPRRDMPLIKLNCAALPSDLVESELFGYQKGAFTGAVQNKKGLF 345 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 E+A GTLFLDEIG+L Q K+LR +QE+EI+RLG +TI V+VR+I AT++ L ++V Sbjct: 346 ELAHKGTLFLDEIGELSASAQAKVLRAIQEQEIQRLGSEQTISVDVRLICATHQHLEELV 405 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 E FR DL+YR+NVFP+ +PPLR+R EDI +A+HF ++ A ++I I T A+ L Sbjct: 406 ESGSFREDLYYRINVFPVFIPPLRERREDILPVAEHFLKEYAEEYQKSIKRISTPAIDLL 465 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 + WPGN+REL+N IERAVL+ + + + S+ Sbjct: 466 TQYHWPGNIRELKNCIERAVLVCDEQVIRTYHMPPSLQ---------TAESTATDSSLSF 516 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 + E++ +V L++ G + AA L + + ++++ GI ++ Sbjct: 517 CEAVAKFEQELLVDALKKARGNML---QAARDLRVSYRIVNYKVKKYGIDAKK 566 >UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Planctomycetaceae RepID=D2QZ64_9PLAN Length = 677 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 178/511 (34%), Positives = 260/511 (50%), Gaps = 18/511 (3%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 L + + S DL + + + + + L R N S L AS Sbjct: 175 LCRLAFELASQPDLAAVAHLALSGLFESTQVDAGGVWLL-PRGNASNSAADLSLVASRTD 233 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRAD-DLFLWQRDPLLLLLASNGCESALLIPLTFG 275 LP + L L+ + L + D L RD S L P+ Sbjct: 234 RLPSYHRLSAFLAATVLRDGEAVLARNIEGDSQLASRD----SKGEFHTTSVLCAPIRLE 289 Query: 276 NHTPGALLLAHTSSTLF-SEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 G + L T S ++ + +AD +A+AV N + + + + E QL Sbjct: 290 KKVVGMIHLYSTDSARVPDPDDLEFTLAVADNVALAVRNLHRQQELAENLLQTRTEVQQL 349 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 +QL + +++ S+ + + +Q+ A S +TVLI GE+G GKE++ARA+H SPR Sbjct: 350 RKQLGAE---SELVGSSEVLSSVQRQIARAAPSRATVLIRGESGVGKELVARAVHYSSPR 406 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 + P V +NCAA+ SLLESELFGH+KGAFTGA + G+FE A GTL LDEIG++ Sbjct: 407 KRGPFVCLNCAALSESLLESELFGHEKGAFTGATDRKIGKFESAHQGTLMLDEIGEMSPS 466 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 +Q K LRVL+ ER+GGS+ I V+VRVIAATNRDL + V + FR DL++RLNV ++ Sbjct: 467 IQAKFLRVLEGHPFERVGGSQPIKVDVRVIAATNRDLEKAVAEGAFRRDLYFRLNVVEIQ 526 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 +PPLR RPEDI LA F Q+ R + A +L + WPGNVREL+NVIERA Sbjct: 527 VPPLRKRPEDIIELAHFFLQRFNAETGRKLRGFSPAATERLQQYRWPGNVRELKNVIERA 586 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 V+L+RG+ + L L S + + D+ E++ I+ L+ T Sbjct: 587 VVLSRGDVVEPEDL-----HLSNLATASESGDNPSPKTSFVPMSLDDIEKRHILATLKAT 641 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 N AA LG++R+TL +++R ++ Sbjct: 642 NWH---KSRAAAILGVERSTLDRKIRRYELN 669 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 184/537 (34%), Positives = 268/537 (49%), Gaps = 26/537 (4%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLA-SVSMVLGDHRK 199 + A +E+D + + + DLD+++A++A + + V++VL D + Sbjct: 125 EPAEAKIERDPSALSAMYAAQKRIGAANDLDEVLAEIADAVLALVPSSTHVTVVLRDDDQ 184 Query: 200 NEKFSLWC-------SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQR 252 + ++ +P + + ++ R L A Sbjct: 185 EPGAAPAAFVPVLTRVRSASGKGGPPAGPVPITRSVYRKVIKERAAVLAADA-----PIE 239 Query: 253 DPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRIAIAV 311 L S L +PL G G L + S + + + + L +A ++AV Sbjct: 240 VGQSESLMGASIRSTLAVPLWKGEEIIGVLQADNRSVPGMLNAGDLETLLVLAANASLAV 299 Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG----DIIYQSQAMEDLLQQVDIVAKS 367 NA + + +E LQ+EN L + G G DII S AM ++ Q+D V + Sbjct: 300 ANARLIKRLVLAEERLQKENSFLKGREERRRGGGGGAVDIIGNSDAMRKVIGQLDKVVDT 359 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 TVLI GETGTGKE+IA A+H S RRDK V NCAA+ SLLESELFGH KG+FTGA Sbjct: 360 RVTVLIEGETGTGKELIAAAVHYRSRRRDKLFVAQNCAALAESLLESELFGHKKGSFTGA 419 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 +G FEIADGGTLFLDEI + PL LQ KLLR LQE EI +G + VNVR++AAT Sbjct: 420 TEEKKGLFEIADGGTLFLDEITETPLSLQSKLLRALQEGEIRPVGATSPKHVNVRIVAAT 479 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 NR+L V +FR DL+YRL VFP+ LPPLR+R +DI LLA HF ++ A + + Sbjct: 480 NRNLEDEVAKGRFREDLYYRLKVFPIRLPPLRERRDDISLLAAHFLERYADEIGKPCGGF 539 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 +A+ ++++DWPGNVREL+N ++R V+ L L P + + L + Sbjct: 540 SQQAMELMVAYDWPGNVRELQNEVQRIVI-----QLEPGAFGTPELLSPRIRQVEGLVAR 594 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 D E+ +++ LR G AA LG+ R L ++++ GI Sbjct: 595 AGTPKGSLKEMMDAVEKFFLLEALR---GHNNNKTNAAKSLGITREGLHKKLRQYGI 648 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 172/475 (36%), Positives = 252/475 (53%), Gaps = 31/475 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ + + + + LSA ++ + DL L Sbjct: 5 ILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRA--------DMVLTDLKLPN 56 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D L S + + + + A+ +T F + L D + Sbjct: 57 MDGQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSL-----DHLMQV 111 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V A R +L++EN +L L +I+ +S AM+++ ++ V S +T Sbjct: 112 VDKALEVR-------ALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRAT 164 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VL+ GE+G GK++IARAIH SPR+D+PLVKINC AIP +L+ESELFG++KGAFTGA T Sbjct: 165 VLLTGESGVGKDLIARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTT 224 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G+FE AD GT+FLDEIGD+P +Q KLLRVLQERE ERLG + T ++VR++AATN+D Sbjct: 225 KPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQD 284 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L +E FR DL+YRLNV PL +PPLR+R DIP LA HF K+A +++I Sbjct: 285 LRAALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDA 344 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 + +LM++ WPGNVRELENVIER++++ G L+ +S P + Sbjct: 345 GMEKLMAYHWPGNVRELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNH------ 398 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 P D+ E++ I + LR +G AA LG+ R L R+ ++G+ Sbjct: 399 -FLPEGLSLDQYEQEIIREALRRADG---NKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 151/431 (35%), Positives = 227/431 (52%), Gaps = 25/431 (5%) Query: 235 TRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFS 293 ++ P D + + D + LL SA+ +I +T A+ ++ + Sbjct: 42 SKDPEYAIVLTDFVMPEMDGIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYI 101 Query: 294 EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 + + D + + + + L+ E +L +L G+II +S Sbjct: 102 TKPFKR-----DELVLVIEKILQM-------QRLEGEVDRLRSELGEKYTFGNIIGESPK 149 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 ++ + + V+ +++ +LI GETGTGKE++A+AIH S R + VK++C+++ +LLE Sbjct: 150 IKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVDCSSLTETLLE 209 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 SELFGH+KGAFTGA GRF AD GT+FLDEIG++ L +Q KLLRVLQ+ E E +G Sbjct: 210 SELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQDSEFEAVGS 269 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 +I V+VR+IAATN DL VE FRSDLFYRLNV + LPPLR+R EDIPLLA HF Sbjct: 270 DESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDIPLLAAHFL 329 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 + + ++ + L L S+ WPGN+RELENVIERAV+L + N + Sbjct: 330 AIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKNRITPEDVPLYQE 389 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 + + P ++ ERQ I+ L + A A L + R Sbjct: 390 K---------MGTRPGLSGKPLQELLEQTERQIIINTLEAND---ADKEKTAKILKISRA 437 Query: 654 TLLSRMQRLGI 664 +L +++ + I Sbjct: 438 SLYNKLNKYKI 448 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 202/601 (33%), Positives = 280/601 (46%), Gaps = 72/601 (11%) Query: 65 YRYHDDGSDVTATTEYQGEMVDYSRHAV-LLGSSGMAELRFIRTHGSRFTSQDCTLFNWL 123 + + V+ + Y + + + L + F Sbjct: 102 GSFCHHPTGVSEKFPKDAGVESYLGVPLRDASGAVLGHLAVFDARPMPPEPRLLYTFQIF 161 Query: 124 ARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHH 183 A L + R+L + R L + H D++ Sbjct: 162 AARAAAELD-------RLRMDRMLRDSEERFRDLFEEAPVAYVHEDME----------SR 204 Query: 184 FFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHR 243 F ++ + + E L R + + + T L R Sbjct: 205 FIRANRTALRVLGLKPEEAVGTVGMSLVPDT-PDAQRLVKEAFASIGRGTDTGGVVLELR 263 Query: 244 ADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHI 303 D G + T+F + ++L Sbjct: 264 RKDDGRPIWIQWWSRPDRGGQFT----------------------RTVFIDVTERVL--- 298 Query: 304 ADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDI 363 M Q LQQ+N L E+L + +I+ QS A+ +LQ+V Sbjct: 299 ----------------MEREQARLQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSK 342 Query: 364 VAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGA 423 VA +DSTVLI GETGTGKE++ARA+H SPR+ KPL+K+NCAA+P L+ESELFGH+KGA Sbjct: 343 VAGTDSTVLITGETGTGKELVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGA 402 Query: 424 FTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRV 483 FTGA+ GRFE+ADGGTLFLDE+G+L LE Q KLLRVLQERE ER+GG+ + V+VRV Sbjct: 403 FTGAVARKPGRFELADGGTLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRV 462 Query: 484 IAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA 543 IAATNRDL Q+V++ FR+DL YRLNVFP+ LP LR+RP DIPLL + F K A + + Sbjct: 463 IAATNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKR 522 Query: 544 IDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSA 603 I+ + + L L+ +DWPGN+RELENVIERA +L+ G L + + Sbjct: 523 IERVSGDTLDALVGYDWPGNIRELENVIERAAILSDGPELVID------------PDVLP 570 Query: 604 LRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + A E I VL +T ++ GP GAAT LG+ TL SRM++LG Sbjct: 571 VTRGGAAPAGAGGQSLVAVEADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLG 630 Query: 664 I 664 I Sbjct: 631 I 631 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 269/564 (47%), Gaps = 62/564 (10%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCA 216 L +I+ + + + +I +V + F L + + L D N + + A+ Sbjct: 27 LHEISKILCAPTETVGIIRNVLAVLESFVDLNNAVVALFDAAGNVETIIGTEADDAAARR 86 Query: 217 CLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN 276 + Q +RQP L + G + +P+ + Sbjct: 87 YFDSI---PEQAVGQIAVSRQPLLVPDVTGDTRYGFATSQAWTVGAGRIGVIGVPILSRD 143 Query: 277 HTPGALLLAHT---SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN-- 331 G +LL ++ + LL +A + V R + +E+L ++ Sbjct: 144 RLVGVMLLDRPAIPEESVVGSMDVCLLSMVAGLMGQMV---RLHRLVQRDRENLLHDSGL 200 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 Q + + G I+ S A+ +LQ+V+IVA+SD TVL+ GE+GTGKE+ A+AIHQ Sbjct: 201 AQPAAPVADGGGYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTGKELFAQAIHQA 260 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 SPR KP VK+NCAA+P S+LESELFGH+KGAFTGAI +GRFE+ADGGTLF+DEIG++ Sbjct: 261 SPRHRKPFVKLNCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADGGTLFMDEIGEI 320 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 Q KLLRVLQE E ER+GG+RT+ V+VRV+ ATNR+L + V +FR+DL+YRL+V Sbjct: 321 SPSFQAKLLRVLQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRFRADLYYRLSVI 380 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 P+ LPPLRDRP DIP+LA F ++ NR I ++ + L + +PGNVRELEN I Sbjct: 381 PIFLPPLRDRPTDIPMLANEFLRRFN-ETNRTSLTIASDGMDVLTTCYFPGNVRELENCI 439 Query: 572 ERAVLLTRGNSLNLHLNVRQSRL-------LPTLNEDSALRSSMAQLLHPTTPENDEE-- 622 R L G ++ +S P R A + T E Sbjct: 440 RRTATLAPGQTIGAADFACRSDGCLSSIFWRPAAPAPGPGRHPAASDVAGDTGAATELPV 499 Query: 623 --------------------------------------ERQRIVQVLRETNGIVAGPRGA 644 +R +++ + + A Sbjct: 500 LPAPRSSSQSSPQSSAAPDPATCPSSAVCSAAQGEWSPQRDELLEAMETAGWV---QAKA 556 Query: 645 ATRLGMKRTTLLSRMQRLGISVRE 668 A LG+ + +++ GIS+++ Sbjct: 557 ARILGLTPRQIGYALRKNGISIKK 580 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 172/394 (43%), Positives = 238/394 (60%), Gaps = 12/394 (3%) Query: 279 PGALLLAHTSSTLFSEENCQLLQHIADR---IAIAVGNADAWRSMTDLQESLQQENHQLS 335 A+L T E NC + + R +A+ G A+ + L++ N L Sbjct: 357 IRAILAELGKYTPEDELNCGACGYPSCREKAVAVYHGLAENRMCLPYFIAQLEKSNFHLR 416 Query: 336 EQLLS-NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 ++L + G ++ S AM+++ + ++ VAK+D+TVLI GE+GTGKE++ARAIH S R Sbjct: 417 QELKAFQGKFGQLVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYHSRR 476 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 + P V INCAA+P +LLESELFGH +GAFTGA+ +G FE A+ GT+FLDEIGD+ L Sbjct: 477 SEAPFVSINCAALPETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLG 536 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 LQ KLLRVLQE E R+G +R VNVRV+AATNRDL + V+D FR +L YRLNV + Sbjct: 537 LQSKLLRVLQEGEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIW 596 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 LPPLR+R +DIPLLA+HF +K + + + ++ EA+ L+ DWPGNVRELENVIERA Sbjct: 597 LPPLRERRDDIPLLARHFLEKSCQRLGKEVNGFTHEAMDALIRADWPGNVRELENVIERA 656 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 V+LT + L RQ R + A M+ E + I+Q L E+ Sbjct: 657 VILTESKRIELGDLPRQFRNMAAGASGWAFTRGMS-----FKEAVAAYESRLILQALEES 711 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 G+ AA LG+KR+TL ++R + R+ Sbjct: 712 QGV---QARAAEILGLKRSTLNEMIKRYNLMGRK 742 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 138/345 (40%), Positives = 207/345 (60%), Gaps = 7/345 (2%) Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 + +S+ E ++ +G ++I QS +M++L + ++ VA + +++ GE+GTG Sbjct: 258 ERIIKSVTHEFKNFNKLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTG 317 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE++ RA+H RRD P VK+NCAA+P +LESELFGH+KGAFTGA GRFE+A Sbjct: 318 KELVVRALHYGGERRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHK 377 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDEIGD+ L +Q K LR++Q++E ER+GG++TI V+VR+I ATN+DL + V++ +F Sbjct: 378 GTLFLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRF 437 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R DL+YRLN L +PPLR+R EDIP L HF ++ + ++ I E LM +DW Sbjct: 438 REDLYYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDW 497 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 PGNVRELEN +ERA++L + + L+ N S + Sbjct: 498 PGNVRELENAMERAIILCGKDLIRLNNLPISIVK----NNKEFDESKHVTPIDIKEITIR 553 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ER+ I++ L + + + LG+ R TL ++M+ I Sbjct: 554 NMEREIIIEALEKCDW---NRTKTSKSLGISRRTLYNKMKEFNIR 595 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 171/474 (36%), Positives = 243/474 (51%), Gaps = 34/474 (7%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 ++L D N L + G S L ++ DL L Sbjct: 7 ILLIDDEPNTLKVLSA--FLTKEGYEVGTAKDGRSGLN----HLQEGGWDMLITDLKLPD 60 Query: 252 RDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 L +L L ++ +T A+ + + + D + + Sbjct: 61 ITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVD-----PDELLLL 115 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V N + L +EN + QL +G+++ +S+AM++L ++ VA+ ++ Sbjct: 116 VQNV-------FERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEAN 168 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VL+ GETGTGKE++AR IH + P V I+CAA+P +LLESELFGH +GAFTGA Sbjct: 169 VLVTGETGTGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQ 228 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G+ E+A GGTLFLDEIG+LPL LQ K LR LQE+EI RLG +R V+VR+IAATNRD Sbjct: 229 KKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRD 288 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + Q+R DLFYRLNV +E+PPLR+R +DIP L HF K +AI + E Sbjct: 289 LEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGE 348 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 + M++DWPGNVRELENVIERAV+L G+S+ + + L+ A Sbjct: 349 VMEVFMAYDWPGNVRELENVIERAVVLCMGDSIAMSCLPPK------------LQERSAP 396 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E E++ IVQ L +T AA LG+ R L ++M+ G+ Sbjct: 397 APSTDGVNLMEMEKRLIVQTLEKTE---QNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 163/472 (34%), Positives = 238/472 (50%), Gaps = 30/472 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D +N + +L + L P D+ + + Sbjct: 15 ILVVDDEQNARVALRTILSEEG----YEIAEAADGEEALALLPGFAPAAV--LADVRMPR 68 Query: 252 RDPLLLLLASNGCES-ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + LL + S A+ + +T A+ + + + Sbjct: 69 MDGINLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLD------------ 116 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V + LQ++ L E++ +I+ + + + + V A + +T Sbjct: 117 VNAVLVVLEKALEKLRLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRAT 176 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+ A+A+H+ SPR DK +K+NCAA+ +LLESELFGH+KGAFTGAI Sbjct: 177 VLILGESGTGKELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGR 236 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+ADGGTLFLDEIGD+ LQ KLLRVLQ+RE ER+GG++T+ V+VR++AATNRD Sbjct: 237 KEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRD 296 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L V++ +FR DL+YRLNV + LPPLR R DIP L HF K ++ + I + Sbjct: 297 LAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPG 356 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 L ++S DWPGNVRELENV+ERAV+L +G+ L R A Sbjct: 357 TLNAVLSHDWPGNVRELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGA- 415 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 E ER+ I++ L G + AA LG+ + R++ Sbjct: 416 -------TLYEIEREAILRTLEMVGGSTS---RAAEILGISVRKIQYRLKEY 457 >UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMY7_DESAA Length = 525 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 170/519 (32%), Positives = 277/519 (53%), Gaps = 17/519 (3%) Query: 155 RVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW--CSDLSA 212 + T A+ +L+ +I + + +++ L + ++ D Sbjct: 6 AFYRETTQALGEDGELEAVIHHCLLVLAKYVPADGLAIQLLEPSLKSIRTIVWQPRDEEN 65 Query: 213 SHCACLPRCMPGESVLLTQTLQT-RQPTLTHRADDLFLWQRDPLLLLLASNGCE--SALL 269 P M +L+ + + + ++DP+ L + S++ Sbjct: 66 PISGGFPEEMKEAILLMPPKTRDFLRSQTLPDIRIINRPEQDPISETLLAFTGRNYSSIS 125 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + L G++ +A +++E+ +L + ++AVG + ++ L+ L Sbjct: 126 MFLKREGKRFGSVTVAAHGRDRYTQEDLELFSLLKTPFSMAVGALLLTQEVSKLKSILDD 185 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 +++ +II ++Q + D+++ ++++A ++ VLI GETG GKE+IA AIH Sbjct: 186 RLELQKKRI----TPNEIIGRNQGLRDVVKMINLIAPQNTPVLINGETGVGKELIANAIH 241 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 +SPR+D PL+ +NC AIP +L+ESELFGH+ GAFTGA +GRFE A GT+FLDEIG Sbjct: 242 SMSPRKDGPLIIVNCGAIPQTLVESELFGHEAGAFTGAAERRKGRFERAHHGTIFLDEIG 301 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +L ++Q KLLRVLQ +EIER+GGS++I VN R+IAAT+R+L +MV + FR DL+YR+N Sbjct: 302 ELKPDIQVKLLRVLQSQEIERVGGSKSIKVNARIIAATHRNLARMVSEGAFREDLYYRIN 361 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELE 568 VFP+ +PPLR R DIP L HF +K +R + + +A+ LM++ WPGNVRELE Sbjct: 362 VFPIVVPPLRTRTNDIPALTDHFIRKKSRDLKIYPAPKLDNKAIYHLMNYHWPGNVRELE 421 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N+IERA++L G +L+ + + + T + I Sbjct: 422 NIIERALILWDGGALSFKNL-------NIAKTEGGAKFGAYKEKSKTPLPLETVVADHIE 474 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 VL T G + GP GAA L + +TL ++M++LGI + Sbjct: 475 NVLALTKGRINGPNGAAKILDVNPSTLRTKMKKLGIPFK 513 >UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Chromatiales RepID=D0KWC0_HALNC Length = 539 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 182/531 (34%), Positives = 268/531 (50%), Gaps = 25/531 (4%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 + ++ + + + + D+ I + R + GL + L D + + Sbjct: 15 EDVELLIIYEASRLMTHNGTADEAINGILRLMSQMIGLNRGRVTLKDDDMDTLSIRYSYG 74 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 L+ A + GE V + +QTRQ + DD ++ + + L Sbjct: 75 LTPPERAR-GHYVIGEGVT-GRVMQTRQVAVVQNIDDEPVYLTRAVERGTLPQETVAFLA 132 Query: 270 IPLTFGNHTPGALLLAH-TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +P+ + N G L + LLQ +A IA + + T L L Sbjct: 133 VPILYNNTPLGVLGAHRLRGRKRPFSRDINLLQVLATLIAQILSLSRLIEEKTAL---LA 189 Query: 329 QENHQLSEQLLSNL-GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 EN L + L G I+ +S A+ L+Q V+ + +TVL+ GE+GTGKE AR Sbjct: 190 DENRALKQALDQKTEGTHGILGESPALRHALRQALHVSPTQATVLLTGESGTGKERFARL 249 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 +H S RD P + INCAAIP +LLESELFGH+KGAFTGA+ +G E+A+ GTLFLDE Sbjct: 250 VHITSQLRDGPFMAINCAAIPEALLESELFGHEKGAFTGAVVKKQGIIELANNGTLFLDE 309 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IGDL L+LQ KLL VL++R I+R+GG++ IPVNVR+IAAT+++L + V + QFR DLFYR Sbjct: 310 IGDLALDLQSKLLHVLEKRAIKRVGGTQDIPVNVRIIAATHKNLQKAVNEGQFRIDLFYR 369 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 LNVFP+ LPPLR+R D+ LA+HF Q+ +R L +L ++WPGN+R+L Sbjct: 370 LNVFPIHLPPLRERGGDVSHLARHFLQRANHEFDRN-TVFGPGVLERLDGYNWPGNIRQL 428 Query: 568 ENVIERAVLLTRGNSLNLHL--------------NVRQSRLLPTLNEDSALRSSMAQLLH 613 EN+++RAVL+ + + + S E +L S Q Sbjct: 429 ENIVKRAVLIAQNREITIDDVILILQHESHIGEHLEAGSTKSVAPIEPPSLPSKSHQPTQ 488 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 +E Q ++ LR+T G AA LGM R++RLG+ Sbjct: 489 RGYGWVRADETQGLLDALRQTGG---NKTRAAMTLGMTPRQFRYRLERLGL 536 >UniRef50_C7LTG8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTG8_DESBD Length = 806 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 178/524 (33%), Positives = 274/524 (52%), Gaps = 33/524 (6%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFG-LAS-VSMVLGDH------RKNEKFSLWCS 208 + + A + ++L + + + ++ +H R N+ Sbjct: 303 ISRLKQAEAALRASEELNRKTLQALPAHIAVIDRQGGIIAVNHAWEEFARHNDADGSPSV 362 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 + A++C R G+ L L+ + L ++ + + Sbjct: 363 TVGANYCEVCRRATAGKDSLAEVALRGIEAVLNGTSEQ---FMMEYPCHSPQEERWFFMT 419 Query: 269 LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVG-----NADAWRSMTDL 323 + PL G + + S + E LQ D + + V A + + L Sbjct: 420 VAPLGLGGENGAVITHLNISERVRFEVE---LQKAHDELELRVEKRTYELRAANKEINQL 476 Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 ++ LQ EN L +++ G+II QS ++ ++ +Q++ V+ ++TVL+ GETGTGK + Sbjct: 477 KDRLQAENICLRQEVAREYNFGEIIGQSDSIVNMFEQIEQVSPLNATVLLLGETGTGKGL 536 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +ARAIH S R+ + ++ +NCAA+PA+L+ESELFG ++GAFTG+ GRFE+ADGGT+ Sbjct: 537 VARAIHARSARKGRSMITVNCAALPANLIESELFGRERGAFTGSNAQQLGRFELADGGTI 596 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 FLDEIG++PLELQ KLLRV+Q+ E+ERLG RTI V+VR+IAA+NR+L + +FR D Sbjct: 597 FLDEIGEMPLELQSKLLRVIQDGEMERLGSPRTIKVDVRIIAASNRNLQDEIRKGRFRED 656 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 LFYRLNVFP+ +PPLR R DI LL F K + + I +P L L + WPGN Sbjct: 657 LFYRLNVFPISIPPLRQRDGDIALLINFFVAKFNKKTGKNIKTVPKNTLNALQEYHWPGN 716 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VRELE+V+ERAV+ + G+SL + SR + + E Sbjct: 717 VRELESVVERAVITSPGSSLQILDRFETSRK--------------TVPVDGNIKALVDLE 762 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 R I+QVLR+T + G GAA L + +TL +RM++ GI + Sbjct: 763 RDHILQVLRKTGWRIEGKSGAAALLEINPSTLRARMRKFGIRRQ 806 >UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIK1_FIBSS Length = 509 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 167/523 (31%), Positives = 257/523 (49%), Gaps = 21/523 (4%) Query: 144 LRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKF 203 + +L I++ + LD + + V + + G+ ++ L + E Sbjct: 1 MSTTHAKIQELELLYKISSILNQSLDFETVAHPVLQTVESVMGVEHATLTLYNRHTGE-I 59 Query: 204 SLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNG 263 S+ ++ +S A R GE + + ++T +P + + Sbjct: 60 SIEIAEGLSSRQASKGRYKVGEGIT-GRVVETGKPIIIPSVAKDPDFLDRT---GRGKTE 115 Query: 264 CESALLIPLTFGNHTPGALLLAHTSST-LFSEENCQLLQHIADRIAIAVGNADAWRSMTD 322 ++ L +P+ GAL + + LL+ IA +A AV R + Sbjct: 116 DKAFLCVPIIMEQEVVGALSADEHNPDEANLNDQIHLLEIIAQMLATAVK---LRRQARE 172 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 E L+ EN +++ +L + +II ++ M+ + Q+D VAKS LI GE GTGK Sbjct: 173 ENEILKAENERMAMELKARFQPDNIIGKTPEMQQVYTQIDQVAKSPLPALIVGEVGTGKG 232 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442 ++A AIH S R P V+++CAA+P S+L+ ELFG +KGA G +N GR E A+GGT Sbjct: 233 LVAEAIHFRSDRNLGPFVRVHCAALPESVLDRELFGSEKGALVGVVNEAPGRVEQAEGGT 292 Query: 443 LFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRS 502 LFLDE+ +L LQ KLLR+LQ+ E+ER+G VNVRVI AT ++L QMV D FR Sbjct: 293 LFLDEVAELTPNLQIKLLRLLQQGEMERVGARFPKKVNVRVICATTKNLQQMVSDGTFRE 352 Query: 503 DLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562 DL+Y+L++ P+ +PPLR R DI LLA +F R + + + + + LMS+ WPG Sbjct: 353 DLYYQLHIVPIYVPPLRKRRTDIVLLADYFVDHYCRLVGKNVRRLARGTIEMLMSYPWPG 412 Query: 563 NVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE 622 NVRELEN IERAVLLT + + H + +S + + Sbjct: 413 NVRELENAIERAVLLTEEDVIYPHHFPPTIQ---------TDETSGTPVSGNLKLMVEAY 463 Query: 623 ERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 ER I L+ + G +A AA L L ++++LGI Sbjct: 464 ERDIICDALKSSKGKMA---AAARSLSTTPRILTYKIKQLGID 503 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 156/475 (32%), Positives = 255/475 (53%), Gaps = 27/475 (5%) Query: 191 SMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLW 250 ++++ D ++ L + + S ++ + L P + L Sbjct: 3 TLLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEIL----PEIILTDLKLGNQ 58 Query: 251 QRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 +L L A+++ +T A+ + + + + + + Sbjct: 59 NGIEILNSLPEEPFRPAVIV-ITAFGTISSAVNAIKQGAFDYLTKPLD-----KEVLLVT 112 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A + + +L +EN L ++L + II +S+ M +L V +++T Sbjct: 113 IRKA-------EERMNLIKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNAT 165 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IARAIH SPR+DKP + INCAAIP +L+ESELFG++ GAFTGA Sbjct: 166 VLIYGESGTGKELIARAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTR 225 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G E AD GTLFLDEI ++PL Q KLLRVLQ++E+ ++G T V+VR+IAATN++ Sbjct: 226 KIGLIESADKGTLFLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKN 285 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + VE +FR DL+YRL V +E+PPLR+R EDIP L F +K ++ + ++ I + Sbjct: 286 LSEQVEKNKFREDLYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEK 345 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 AL L+++ WPGN+RELE+VIERA+++ + + + + R++ ++ Sbjct: 346 ALEALLNYSWPGNIRELESVIERAIIICEKDKITFNDIQDELRVI-------TPKNLFDI 398 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + +E E++ I + L ++N ++A AA LGM T R+++ G+S Sbjct: 399 DIPDEGINYEELEKELIKKALIKSNFVIA---KAARLLGMSYDTFWYRLKKFGLS 450 >UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Proteobacteria RepID=A0YEC8_9GAMM Length = 639 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 179/525 (34%), Positives = 277/525 (52%), Gaps = 38/525 (7%) Query: 146 LLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSL 205 + ++ ++ +++L++ + +D + + V G + + Sbjct: 138 IFQEFQNENQLLLEAAGEGIYGVDANGITNFVNPAAERILGYTAA-------EMAGRNMH 190 Query: 206 WCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE 265 H + + +D W + + + + Sbjct: 191 AMVH----HSHSDGSHFNVKDCPIFSVFHDGA---VQVVEDDIFWSKFGVPIDVEYTST- 242 Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 P+ + GA+++ + ++ + A +A + L++ Sbjct: 243 -----PILVNGYILGAVVI---------------FRDVSQKKAYKKALLEALAEVESLKD 282 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 L+ EN L E++ S II S ++++LQQ+D+VA + +TVLI GE+GTGKE++A Sbjct: 283 RLEMENAYLQEEIKSKFNHHRIIGSSAPLQNILQQIDLVAPTKATVLITGESGTGKELLA 342 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 RAIH+ S R + L+++NCAAIP L ESE FGH KGAFTGA + GRFE+ADGG++FL Sbjct: 343 RAIHESSGRSGRSLIRVNCAAIPQDLFESEFFGHVKGAFTGASSDRPGRFELADGGSIFL 402 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DE+G++PL LQ KLLRVLQE+E ER+G + T V+VR+I ATNRDL QMV + FR DL+ Sbjct: 403 DEVGEIPLHLQGKLLRVLQEQEFERVGEAITRTVDVRIITATNRDLKQMVAEGLFREDLY 462 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +RLN+FP+E PLR R +DIP L +HF + A N++ IP + +L ++DWPGNVR Sbjct: 463 FRLNIFPIESIPLRQRKDDIPQLTQHFLGQAAIRANKSDLRIPLHEIEKLKAYDWPGNVR 522 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 ELENVIER V+L RGN + + + + + L P + + E+Q Sbjct: 523 ELENVIERQVILIRGNIVRFNNLLSSDNNAIIEGAGADKDNKYEILTEP---QLRQMEKQ 579 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 I++ L G V G GAA L +K TTL SR+++LGI+ R+ L Sbjct: 580 NIIRALHYCKGRVFGDGGAADLLSIKPTTLSSRIKKLGINTRDSL 624 >UniRef50_C8X5B4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5B4_DESRD Length = 522 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 175/517 (33%), Positives = 271/517 (52%), Gaps = 16/517 (3%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSA 212 + L+ I NA++ + L ++ EI+ S+ L DH S + S Sbjct: 19 RYETLLRINNAIVQQTTRESLFQALSNEIYQLIEYDRFSINLYDHELRSL-SYFASAKGV 77 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 S + R + + ++ ++T++P + + + + + G + PL Sbjct: 78 SLGGKMTRPL-EKGLIAQTVIRTKEPLIIPDVKNQSYFSN---MNNMIEAGLNVTMGYPL 133 Query: 273 TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH 332 + G+L + + +E + ++ ++AIAV N A + L ESL+ E Sbjct: 134 IVRDTVLGSLHFSFKNRPDNLDEVNSFFEDLSPQVAIAVYNILAHNRLKRLNESLKNEKK 193 Query: 333 QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLS 392 L ++ + + Y+S++M D++QQV VA SD+ VLI GETGTGKE IA IH S Sbjct: 194 FLKKEAHGSFDPENFFYKSESMSDVMQQVKNVAASDAPVLITGETGTGKEYIAHCIHHTS 253 Query: 393 PRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLP 452 R D LVK+NC A+ +SL ESELFGH KGAFTGA GRFE+A+ GT+FLDEI +LP Sbjct: 254 LRSDALLVKVNCPALASSLFESELFGHTKGAFTGASQQRIGRFEMANNGTIFLDEIAELP 313 Query: 453 LELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFP 512 + Q K+L VLQ+R ER+G SR+I + R++AATN+DL + + FRSDL+YRLN Sbjct: 314 MPQQAKILHVLQDRCFERVGESRSISADFRIVAATNKDLLHAIHNESFRSDLYYRLNTAQ 373 Query: 513 LELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIE 572 + +P LR+RPEDIP+L + + ++++ ++R + L L + WPGNVREL+N + Sbjct: 374 IHIPSLRERPEDIPVLVINLSDQISKRLHRPSPKYSDKVLESLCQYPWPGNVRELKNFVH 433 Query: 573 RAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLR 632 R L ++ L + + E E+Q IV LR Sbjct: 434 RMFLQRSAENVKLSDVKSYLGNSQEI-----------EYNDNNILPMHEMEKQHIVNALR 482 Query: 633 ETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 G+++G GAA+ L MKR+TL R++R I+ + Sbjct: 483 ICKGVLSGENGAASLLQMKRSTLQYRLKRHNINPSDY 519 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 170/514 (33%), Positives = 264/514 (51%), Gaps = 18/514 (3%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L T A+ ++L ++ + R + + + L + E D++ Sbjct: 7 LLRSPTQALNEGMELRSVVNSILRMLAERPAMVHPYLTLVEPESGESHLEEAPDMTPEQQ 66 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTF- 274 + ++ + +Q+ + + H + D FL + L + S + PL Sbjct: 67 RRIRPRH--GEGIVGRVVQSGRTRVVHGSSDSFLNR-----LGRSEPEGMSFICAPLRQR 119 Query: 275 GNHTPGALLLAHTSST-LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQ 333 G L + H + + L++ +A+ + A+ R +E+++ EN + Sbjct: 120 DGEIVGTLAVDHRGQDPAALQGDVLLIEALAEMLGRAIE---LRRRSMAEREAVELENQR 176 Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 L +L + +II ++M + ++ V+ +D+TVL+ GE+GTGKE++ARAIH SP Sbjct: 177 LRAELRGRFRVANIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFASP 236 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 R + P V +NCAA+P LESELFGH++GAFTGAI +GRFE+ADGGTLFLDEIG+L Sbjct: 237 RAEAPFVAVNCAALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGELRP 296 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 Q KLLRVLQER ER+GG+ T +VRV+ AT+ DL + +FR DL+YRLNVF + Sbjct: 297 HTQVKLLRVLQERRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVFEI 356 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 LPPLR+R EDI LA F ++ + I +A R L++WDWPGNVRELEN IER Sbjct: 357 MLPPLRERGEDILALADFFVERYGPRQRPPVTRIGHDAARHLLAWDWPGNVRELENCIER 416 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA---QLLHPTTPENDEEERQRIVQV 630 AVLLT + R + A + + + ER+ + + Sbjct: 417 AVLLTNDGVIEAEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILERA 476 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 L ++ G AA LG+ + R+++ + Sbjct: 477 LADSGG---NRASAARALGISERRMGLRVKKYRL 507 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 157/483 (32%), Positives = 241/483 (49%), Gaps = 24/483 (4%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 +++ D + S + PG L + +T L D+ + Sbjct: 3 ARILVVDDEEIVIRSCVRILNDDLYTV---DSAPGGFEALKKVDETAYDILIL---DVMM 56 Query: 250 WQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 + D L +L + + + G + A+ + + + D + Sbjct: 57 PKMDGLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFD-----PDELK 111 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 + V A + L QEN +L ++ S +II S M+ + + A ++ Sbjct: 112 LVVNRAL-------ERRQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTN 164 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 STVLI GE+GTGKE+IARAIH S R+D+P V ++C + +LLESELFGH KG+FTGA+ Sbjct: 165 STVLITGESGTGKEMIARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAV 224 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 RG F++A+ GTLFLDE G++PL Q KLLRV+QERE +G + NVR+I ATN Sbjct: 225 ANKRGMFDVANNGTLFLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATN 284 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 +DL MV + FR DL+YR+NVFP+ P LR+R +DIP LA HF + + + + I Sbjct: 285 KDLKAMVAEGTFREDLYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEIS 344 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 A+ LM++ WPGNVRELEN ++RAV+L+ + P L+ D S Sbjct: 345 EGAMSLLMNYGWPGNVRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDE 404 Query: 609 AQLLH--PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 + + +E E+ + + L+ + +A GM+RT + M++ I V Sbjct: 405 LKRIKKIAREKSVEEVEKLFVQETLKR---NASNVTRSAEETGMQRTNFQALMKKYNIRV 461 Query: 667 REV 669 R+ Sbjct: 462 RDT 464 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 151/387 (39%), Positives = 233/387 (60%), Gaps = 14/387 (3%) Query: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSN 341 + + T LF + + + + +++ + ++ L ++ QL N Sbjct: 296 INVISTIDPLFIDGQFKGVISTSRPVSLIKE---LMSKLNKSEQELDYYKNEFLRQLSKN 352 Query: 342 LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 +II ++ ++D++ +++ STVLI GE+GTGKE+IA+AIH S R++KP V+ Sbjct: 353 SSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVR 412 Query: 402 INCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 +NCA+IP +LLESELFG++KGAFTGA+ + G+F IAD GT+FLDEIGD+PL +Q KLLR Sbjct: 413 VNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLR 472 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 VLQEREIE +GG ++VRVIAATNR+L +M+ED FR DL+YRLNV + LPPLR+R Sbjct: 473 VLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRER 532 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 EDIP LA+HF K+ + +++ I I +AL L+ + WPGN+RELEN++ERA+ L G+ Sbjct: 533 KEDIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAINLCDGD 592 Query: 582 SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGP 641 ++ P+ + +S + +E E+Q I +++ Sbjct: 593 YIDSSYL-------PSYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYK----SF 641 Query: 642 RGAATRLGMKRTTLLSRMQRLGISVRE 668 A LG+ T+ + ++ I V++ Sbjct: 642 NKAGKALGLTHRTVSLKCKKYNIEVKK 668 >UniRef50_D2R1I6 Sigma 54 interacting domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1I6_9PLAN Length = 539 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 190/446 (42%), Positives = 261/446 (58%), Gaps = 10/446 (2%) Query: 220 RCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTP 279 R P + Q +T + W D +++ S PL Sbjct: 101 RRFPVGVRKVGQIAKTGRSLEVADVAHDHGWAADRTW--ISNERIASFAGHPLLHRGEVL 158 Query: 280 GALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL 339 G L L S E + L+ IAD +A A+ NA A + L++ L+QEN L E++ Sbjct: 159 GVLGLFARQSPG--ESCFEWLRMIADHLAAAIANARALDEIDSLKKRLEQENEYLREEVQ 216 Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 GD+I QS +++ +Q+++VA +DS VLI GE+GTGKEV+AR +H+ S R D+PL Sbjct: 217 QITSFGDLIGQSPSLQATTRQIELVAPTDSAVLILGESGTGKEVVARELHRRSRRADRPL 276 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 +K+NCAAIP L ESE FGH KG+FTGA+ GRFE+AD GTLFLDEIG++PL+LQ KL Sbjct: 277 IKVNCAAIPRELYESEFFGHAKGSFTGALRDRAGRFELADRGTLFLDEIGEIPLDLQAKL 336 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LRVLQE E+ER+G RT ++VR+IAATNR+L E +FR DLFYRL+VFP+ELPPLR Sbjct: 337 LRVLQEGELERIGEERTRRIDVRIIAATNRNLRTEAEAGRFRQDLFYRLSVFPMELPPLR 396 Query: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 R EDIPLLA+H+ + +R + R + ++ L + WPGNVREL++V+ERA ++ Sbjct: 397 KRVEDIPLLAEHYLDRFSRQLGRPRPRLTLAHVQDLQRYPWPGNVRELQHVLERACIVAT 456 Query: 580 GNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVA 639 L Q + E S+ + + E E E I + L +NG + Sbjct: 457 DGKLQFDFPKDQLKRREEPAEPSSPQHILTAA------ELRELEASNIRKALAASNGKIY 510 Query: 640 GPRGAATRLGMKRTTLLSRMQRLGIS 665 G GAA+RL MK TTL SR++ LGI Sbjct: 511 GKNGAASRLAMKPTTLASRIKALGIR 536 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 178/524 (33%), Positives = 272/524 (51%), Gaps = 48/524 (9%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN 200 + + +H R+L++ + + LD + L V G + ++ Sbjct: 2 SPTKSPINQVSEHQRLLLESMSEGVYGLDENGLATFVNLAAERLTGWEANDLIGKSIHDF 61 Query: 201 EKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLA 260 H R P + Q LQ +T ++ W++D + Sbjct: 62 HH-----------HSHADGRHYPQADCPIYQCLQDG---ITRTKENEVFWRKDGTSFAVE 107 Query: 261 SNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSM 320 + P+ GA+++ ++I++R I A Sbjct: 108 YSAT------PILQEGSIQGAIVV---------------FKNISERKRIESALQKALTEN 146 Query: 321 TDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTG 380 L+E L+ EN L ++ SN DII QS A+E L Q+ + A + + +LI GE+GTG Sbjct: 147 RFLKEKLEAENSYLQSEIESNYQ-SDIIGQSPAIEHLQTQISLSAPTSANILIQGESGTG 205 Query: 381 KEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 KE++ARAIHQ S R+ + LVK+NC AIP L++SELFGH+KGAFTGA+ GRFE+A+ Sbjct: 206 KELVARAIHQQSERQAQTLVKLNCGAIPEGLVDSELFGHEKGAFTGAVKQRIGRFELANK 265 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDE+ +LPL+ Q KLLRVLQE E ER+GG++TI V+VR+IAA+N++L Q V D F Sbjct: 266 GTLFLDEVSELPLDAQVKLLRVLQEGEFERVGGNKTIRVDVRIIAASNKNLEQAVHDGSF 325 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R DL+YRLNVF +++PPLR+R D+P+L+ F +K M ++ + +L+ + + W Sbjct: 326 RLDLYYRLNVFSVQVPPLRERKSDLPILSHFFAKKACADMGKSFKGLHMPSLKWMSHYQW 385 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 PGN+REL N IE +L G ++H +++ ++ Sbjct: 386 PGNIRELSNWIEHNAILHTGGLFHIHPMAHARHDHSVEHDNESI------------VSLA 433 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E E+Q I + L NG +AG GAA L + +TL S+M++LGI Sbjct: 434 EAEKQHIQKALLHCNGRIAGANGAAQLLQLPASTLRSKMKKLGI 477 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 178/501 (35%), Positives = 275/501 (54%), Gaps = 13/501 (2%) Query: 165 LSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPG 224 +S L + + V I ++ + R L + +A+ Sbjct: 5 ISTLTCEKTMDIVLTAIRELIEYELAVVLSCEGRS-RLRVLKAAGPAATKILEGYTFSLE 63 Query: 225 ESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLL 284 + + +Q +P L D D ++ S ++ PL + G L L Sbjct: 64 DRKDIAAIVQEGKPYLF----DEAEPHVDTYAGVVDFPADHSCMVTPLYLDDTLQGVLTL 119 Query: 285 AHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGI 344 H S F+ +N +L+ ++ I++A+ ++ ++ ++ QE + L E+ + Sbjct: 120 DHHSCNRFTPQNVRLVGTLSKLISLAIAQSNDKEALEKEHLAILQERNFLLERNAGA--L 177 Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 ++I S + + +VA S + VLI GETGTGKEV+ARA+H+LS R+ P + +NC Sbjct: 178 SELIGNSVSWNRVKDAAAMVAASQTPVLIQGETGTGKEVVARAVHRLSDRKGGPFIPVNC 237 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 +AI A + ESELFGH+KG FTGA+++ +GRFE+ADGGTLFLDEIGDLPLE+QPKLLR LQ Sbjct: 238 SAISAGVAESELFGHEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRALQ 297 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 E+++ER+GG TI V+VR+IAA++ DL+ V + +FR DL+YRLNVFP+ LPPLR+R D Sbjct: 298 EKKLERIGGESTISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGSD 357 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 I +LA++FT ++ A+ E++ L+ DWPGNVR+L+N +ERA +L+RG + Sbjct: 358 ILILAEYFTGQIRARAGHKDLALAPESVDILLQADWPGNVRQLQNTLERAAILSRGGVIR 417 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 + + + A L D + + +VL T G V G GA Sbjct: 418 AEHI------VADETPEDSFCLPGADLDATALLRFDVMVKAYLQKVLTRTGGKVYGKGGA 471 Query: 645 ATRLGMKRTTLLSRMQRLGIS 665 A L +K TTL S++++ GI Sbjct: 472 AEILDLKPTTLHSKLKKYGIR 492 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 164/479 (34%), Positives = 248/479 (51%), Gaps = 27/479 (5%) Query: 188 ASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDL 247 +++ + K + L + + L+ + D+ Sbjct: 6 DFPKLLIIEDEKRTRMGLVMALGEEF-----DTYEASDLSSAMAILENEPIDIV--LADI 58 Query: 248 FLWQRDPLLLLLASNGCE-SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADR 306 L + +L + +T A+ + + + L ++ Sbjct: 59 RLGKESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDL-----EK 113 Query: 307 IAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAK 366 + I + R + + EN QL QL G+ II S AM+ + +++ VA Sbjct: 114 LEITLKRIYQSRKV-------EVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVAS 166 Query: 367 SDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTG 426 S +TVL+ GE+GTGKE++A AIHQLSPR++ P V ++CAA+ LLESELFGH+KGAFTG Sbjct: 167 SKATVLLEGESGTGKELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTG 226 Query: 427 AINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAA 486 AI GRFE A GTLFLDEIG++ L Q KLLR L E+ I+R+G ++ + V+VRVIAA Sbjct: 227 AIERRIGRFEEAARGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAA 286 Query: 487 TNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDA 546 TN++L +MVE+ +FR DLF+RLNV + +PPLR+R EDIPLLA+ F + A + ID Sbjct: 287 TNKNLEKMVEEGKFREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDR 346 Query: 547 IPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRS 606 + EA++ L+ +DWPGNVREL+ IE V+L +G + + R+ L Sbjct: 347 LSPEAMKILLEYDWPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVE 406 Query: 607 SMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 S P E E++ I+ LR G AA +LG+ R TL ++++ ++ Sbjct: 407 S----SEPDCFNLKEAEKRLILHALRVCQGK---KTSAAKKLGISRKTLQRKIKQFELT 458 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 171/480 (35%), Positives = 264/480 (55%), Gaps = 32/480 (6%) Query: 185 FGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRA 244 ++ +++ D + + SL + + + + T Sbjct: 1 MSVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESA------NEALSRVAEQTYDLAL 54 Query: 245 DDLFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHI 303 D+ + D + L + L++ + G A+ + + + Sbjct: 55 LDIKMRGTDGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLD----- 109 Query: 304 ADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDI 363 + A V A A + +QEN +L EQ+ + + ++++S AM+ + ++ Sbjct: 110 PEETAHLVSKALAH-------KRTEQENVRLKEQIEEHAHVD-LVWRSDAMKKINDAIET 161 Query: 364 VAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGA 423 VA +D+TVLI GE+GTGKEV+ARAIH LS RR P+V ++C A+ +LLESELFGH+KGA Sbjct: 162 VAPTDATVLITGESGTGKEVVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGA 221 Query: 424 FTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRV 483 FTGA +G+FE+A+GGT+FLDEIGD+ L+ Q LLRVLQEREI R+GG++ I V+ R+ Sbjct: 222 FTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRI 281 Query: 484 IAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA 543 +AATN+DL +++E+ FR DLFYRLNVF +ELPPLRDR EDIPLL HFT+K A MN+ Sbjct: 282 VAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKR 341 Query: 544 IDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSA 603 + + + A+ L + WPGNVRELEN +ERA+++ + L V + + T++ + Sbjct: 342 VTRVASPAMNMLQQYPWPGNVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNG 401 Query: 604 LRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + ++ E++ I+ VL ETN AA L + R TL +++R G Sbjct: 402 TGTP---------KTLEDIEKEHILHVLDETNW---NQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 173/565 (30%), Positives = 268/565 (47%), Gaps = 33/565 (5%) Query: 115 QDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLD----- 169 + + +A +I Q + + +R +R L+ + ++ D Sbjct: 13 DEGGIHARVAAMIVQRAQELCERYDCHLYIRSERSERCEMHSLMKLVALKVAQGDSVFVS 72 Query: 170 -LDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVL 228 D E+ F + + +K + + L G Sbjct: 73 SEGDNGRQAVIEMVRFLESDFIMNEASEIHGVDKLLHENALMQERLQMILESVQDG---- 128 Query: 229 LTQTLQTRQPTLTHRADDLFLWQRDPLLLLLA--SNGCESALLIPLTFGNHTPGALLLAH 286 + ++ + T + + + + +++ + L G G++ Sbjct: 129 ICVVDRSGEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAVLRSGIARIGSIRHKK 188 Query: 287 TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ---ENHQLSEQL----L 339 +T+ + N + IA V + L E L Q + L ++L Sbjct: 189 DGTTIVANVNPIF---VDGEIAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKK 245 Query: 340 SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPL 399 + + I +S + D+L A S + VLI GE+GTGKEVIA IH S RR P Sbjct: 246 TAQAFANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPF 305 Query: 400 VKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKL 459 +++NC AIP +LLESELFGH+KGAFTGA+ G+FE+A+ GT+FLDEIG+L LQ KL Sbjct: 306 IRVNCGAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKL 365 Query: 460 LRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLR 519 LRVLQ++E +R+GG TI V+VR+IAATNRDL MV + FR DL+YRLNV P+ LPPLR Sbjct: 366 LRVLQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLR 425 Query: 520 DRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579 DRP+DIPLL +HF +K+++ + + I +A++ M + WPGNVRELENVIER + L Sbjct: 426 DRPDDIPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMD 485 Query: 580 GNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVA 639 + + + + + L T +E E+Q I LR+ Sbjct: 486 TDLITAAMLPSYIK-------GDIAGREVQSLADDTVLPWEEYEKQIIANALRQ----GT 534 Query: 640 GPRGAATRLGMKRTTLLSRMQRLGI 664 GAA L + T+ ++ ++ G+ Sbjct: 535 SFNGAAKLLRISHKTVAAKARKYGL 559 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 182/573 (31%), Positives = 287/573 (50%), Gaps = 28/573 (4%) Query: 108 HGSRFTSQDCTLFNWLARI-ITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLS 166 ++ T L + +L +Q + + + + V Sbjct: 90 EAAKATLPYGFLVKPFREKDLLVMLDIAQYRHDQHLKY----NHNEAPGFQKQVEHIVGK 145 Query: 167 HLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFS--------LWCSDLSASHCACL 218 + I +A + + + R + S S A + Sbjct: 146 QETTAEKIKQLASAMQSLLPYDFLWVTRSSRRGAAGDLNLFRYDSQHYKSYSSEELQADM 205 Query: 219 PRCMPGESVLLTQTLQ-TRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNH 277 + ++ L + + + + +L ESAL++ L Sbjct: 206 ELSQRDFKLWNSKALVFDGKAIFNGYEFRKLRMENEWIKVLSDHFSLESALVVELKCEEE 265 Query: 278 TPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSE- 336 + T + L+++ + ++ +A+ + + + + + L E Sbjct: 266 PFQFI-FFSTIADLYTKVHQGIVNQFHKSLAL-IAQDIFYNKREISVAAAEPKPQPLKEV 323 Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 Q+ II QS ++D+ +++ +VA D++VLI GE+GTGKE +A IH+LSPR+ Sbjct: 324 QVPLESDFHGIIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTIHKLSPRKS 383 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 KP+V +NCAA+P +L+ESELFGH+KGAFTGA + G+FE ADGG++FLDEIG+LPLE Q Sbjct: 384 KPMVTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEIGELPLEAQ 443 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 KLLRVLQE+EIERLGG+ T +NVR+I ATNR+L + V + +FR DL+YRLNVFP+ELP Sbjct: 444 VKLLRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELP 503 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 LR R EDIPLL+ HF +K +++ + I + ++ +L +DWPGN+RELE++IER+VL Sbjct: 504 SLRQRKEDIPLLSHHFIKKYSKNASAQIGGVSAASMEELQQYDWPGNIRELEHLIERSVL 563 Query: 577 LTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 L++ + + + L N +E ER I+ +L+ G Sbjct: 564 LSKEEEITTIIVPTTTPSLAGSNSGEF-----------RIKTMEEMERDHILSILKMCKG 612 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 V GP GAA L M TTL S++++LGI + Sbjct: 613 KVFGPGGAAEILNMPSTTLNSKIKKLGIKYEYI 645 >UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCN8_DESAA Length = 529 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 166/515 (32%), Positives = 267/515 (51%), Gaps = 15/515 (2%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 + D + + + S L+++ + + + +S+ L + ++ + Sbjct: 2 NPDPNEFFKNTVLRICSSLEVEKALWHSLLYVREHIPASQMSLHLYNPVTGIAETVAQAT 61 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 + + ++ + ++++ +R D + + + +SAL+ Sbjct: 62 PGKYGRLSVKTHLSEKARRQVEAQRSQRLRRVNRVSDDPVAEE---VSRYFGGAVQSALI 118 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + L G L L ++ + QL + + + A+A+ N+ R + L+E L Sbjct: 119 LDLVIEGRLIGVLTLHGEVGKTYTARHEQLFRLLNEPFAVALSNSMRQRELNKLKELLTD 178 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 +N ++ +++ + +++ VA +S VL+ GETG GKE+IA A+H Sbjct: 179 DNPYF-QENEEAFSENEVVGADYGLRGVMEMARQVAPLESPVLLLGETGVGKELIASAVH 237 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 + SPRR+ PL+K+NC AIP +L++SELFGH+KGAFTGA + RGRFE AD GT+FLDE+ Sbjct: 238 RASPRRNGPLIKVNCGAIPDTLIDSELFGHEKGAFTGASSMKRGRFERADEGTIFLDEVA 297 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +L E Q +LLRVLQE+EIER+G + T V++RVIAAT+R+L +V +FR DL +RL Sbjct: 298 ELSPEAQVRLLRVLQEKEIERVGAAETTHVDIRVIAATHRNLDGLVSMGRFRQDLLFRLK 357 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMSWDWPGNVRELE 568 VFP+ +PPLRDR DIP L +HF + + M I + A+ +LM + WPGNVRELE Sbjct: 358 VFPIVIPPLRDRKGDIPSLVQHFVRIKSLDMKLGTIPPLAPGAMDKLMDYSWPGNVRELE 417 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 N +ERA++L+ G + P +L P D+ + Sbjct: 418 NAVERALILSGGKKPVFQEFDLGLKPGPKTKNVESLS----------LPTMDQAMADLMR 467 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + L G V G GAA LGM TL +RM++LG Sbjct: 468 KALVLAKGRVEGKGGAAEILGMHPMTLRNRMKKLG 502 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 161/480 (33%), Positives = 245/480 (51%), Gaps = 28/480 (5%) Query: 196 DHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPT-------LTHRADDLF 248 ++R+ + + D S L + + L+ +Q D+ Sbjct: 21 ENRQENQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIK 80 Query: 249 LWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRI 307 + + D LL ++ + + + A+ + + + + + I Sbjct: 81 MPRLDGFGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFK-----NEEI 135 Query: 308 AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 + V NA L++EN QL ++L +II +S+ M+ + ++ V+ S Sbjct: 136 RLVVENALERMD-------LRRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSAS 188 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 VLI GE+GTGKE++ARAIH S R D+P V I C AIP +LLESELFGH+KGAFTGA Sbjct: 189 KVNVLITGESGTGKELVARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGA 248 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 + +G FE+ADGGTLFLDEI +LP +Q KLLRV+QE E ++GG+R + V+VR++AAT Sbjct: 249 VQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAAT 308 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 N+DL Q V + QFR DL+YRLNV + LPPLRDR EDIPLL HF QK+ + I Sbjct: 309 NKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS---TTI 365 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 P +R+ + + WPGN+RELEN +ER V+L + +L + Sbjct: 366 PDGVMRRFLDYHWPGNIRELENTVERCVVLGGKGEITEDSLPP--HMLCISGTGDQQLTE 423 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + + E+ +++ L T G+ + AA L + ++ R+ + GI Sbjct: 424 LPEEGLDLDDYLGAIEKDILLKALDRTGGV---RKRAAELLHITFRSIRYRLAKFGIEAE 480 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 172/571 (30%), Positives = 276/571 (48%), Gaps = 43/571 (7%) Query: 133 SWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSM 192 +WL++ +++ + + K L I+ +++ L+ +A+V + + ++ Sbjct: 33 NWLDECMTELSPKTMHKRDLGCSGLYRISKVLITSASLEIKLANVINTLPALLPMRRGAI 92 Query: 193 VLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQR 252 V+ + + + + P + L+Q Sbjct: 93 VVVGAEGEP----ETTATFGVEPPSSGARHIAAKAAIDRIVAKGAPLVVPDTCKSELFQ- 147 Query: 253 DPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFS----EENCQLLQHIADRIA 308 D L +++ G + + +P+ T G L + + EE + L +A+ A Sbjct: 148 DELQSIVSGTGQVTFIGVPMKADQETLGTLWIDRAKDGAATRTQFEEEVRFLSMVANLAA 207 Query: 309 IAVGN----ADAWRSM-TDLQESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLLQQVD 362 AV + R + + + + +L E I I+ +S A+ +++ V Sbjct: 208 RAVRLNGHESRDSRPIGEEGDRKISGGDKELPEPTRQRPTRIDWIVGESPALRQVVESVK 267 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 +VA+++S VL+ GE+GTGKE A+AIH+LSPRR KP VK+NCAA+ A +LESELFGH+KG Sbjct: 268 VVAQTNSAVLLRGESGTGKEFFAKAIHELSPRRKKPFVKLNCAALSAGVLESELFGHEKG 327 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 AFTGAI+ GRFE+ADGGTL LDEIG++ Q KLLRVLQE E+ER+GG++T+ V+VR Sbjct: 328 AFTGAISQRAGRFELADGGTLLLDEIGEISPAFQAKLLRVLQEGELERVGGTKTLKVDVR 387 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 +I ATN+DL V + +FR+DL+YR+NV PL LPPLR+R DIP LAK F + R NR Sbjct: 388 LICATNKDLETAVAEGEFRADLYYRINVVPLFLPPLRERNGDIPRLAKVFLDRFNRENNR 447 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN-------------- 588 ++ AL L +PGNVRELEN + R L R ++ Sbjct: 448 NLE-FTPAALEILSRCKFPGNVRELENCVRRTATLARSATIVPSDFSCQNDQCFSSMLGK 506 Query: 589 ----------VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIV 638 + + L +S T +R+ ++ + + + Sbjct: 507 TADRPLGSHSLNGLAMSKRLPVESPASLGYPAGPGGLTVAPHLSDRELLISAMEKAGWV- 565 Query: 639 AGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 AA LG+ + ++R I V+++ Sbjct: 566 --QAKAARILGLTPRQVGYALRRHHIQVKKI 594 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 160/473 (33%), Positives = 238/473 (50%), Gaps = 29/473 (6%) Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPT-------LTHRADDLFLWQRDP 254 ++ + S L + E + + + D + D Sbjct: 3 SLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMDG 62 Query: 255 LLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGN 313 + +L ++ +T A+ + + + + + + +A Sbjct: 63 MQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVA--- 119 Query: 314 ADAWRSMTDLQESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVL 372 + +L +EN L QL + II+ SQ M L VA S +TVL Sbjct: 120 ---------ERRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVL 170 Query: 373 ICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR 432 + GE+GTGKE++AR IHQLSPR +P++ +NC A+P SL+ESELFGH+KGAFTGA + Sbjct: 171 LQGESGTGKELLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRI 230 Query: 433 GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLW 492 GRFE ADGGTLFLDEIG+L + +Q KLLR LQERE +R+GG+ I +VR+I+ATNRDL Sbjct: 231 GRFEEADGGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLE 290 Query: 493 QMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEAL 552 MV++ +FR DL+YRLNV + +PPLR+R EDIP L HF ++ A + I I +EA Sbjct: 291 TMVKEEKFREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEAR 350 Query: 553 RQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLL 612 LM +D+PGNVRELEN+IERAV++ R + + + L + Sbjct: 351 DLLMKYDYPGNVRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGE----- 405 Query: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + E+Q I + + AA LG+ L ++++ G+ Sbjct: 406 GRLRGAIENLEKQMIQDAMEKAGDH---QTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEG0_ANADE Length = 520 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 187/517 (36%), Positives = 276/517 (53%), Gaps = 13/517 (2%) Query: 155 RVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE--KFSLWCSDLSA 212 + ++T + S LD+ I V + L + + + D + + + + Sbjct: 5 QFFRELTLRICSTLDIQKAIERVFPVLRARVPLDELRLEVLDRKLGAVRQIARVSTAGQG 64 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPL 272 + + P L + + D + ++ +L +S L +PL Sbjct: 65 RAGERITQVKPAIIPLPARLWRWADAMRGPILMDEASGEDMRMMRVLTKAEHDSDLAVPL 124 Query: 273 TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENH 332 + G LLL ++ + +LL +AD A+A+ NA A + + +++ L + Sbjct: 125 RVESTQLGFLLLRAAGKGRYTAAHAELLATVADPCAVALANALAHQELVQVRDELLDDKR 184 Query: 333 QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLS 392 L+ +L ++I S + +++ V A +STVL+ GETG GK+VIA +H S Sbjct: 185 FLNRELFHATA-DEVIGGSTGLRSVMELVRQAAPLNSTVLLLGETGVGKDVIANVLHDAS 243 Query: 393 PRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLP 452 PRR+ P +K+NC AIP L++SE+FGH+ GAFTGA HRGRFE ADGGT+FLDEIGDLP Sbjct: 244 PRREGPFIKVNCGAIPEGLVDSEMFGHEAGAFTGARAAHRGRFERADGGTIFLDEIGDLP 303 Query: 453 LELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFP 512 Q +LLRVLQ REIER+GG+R + V++RVIAAT+++L QMV + +FR DLF+RLNV P Sbjct: 304 KGAQVRLLRVLQSREIERVGGTRPLKVDIRVIAATHQNLQQMVTEGRFREDLFFRLNVLP 363 Query: 513 LELPPLRDRPEDIPLLAKHFTQKMARHMN-RAIDAIPTEALRQLMSWDWPGNVRELENVI 571 + +PPLR R EDIP L +HF R + R I AL +L ++ WPGNVRELENV+ Sbjct: 364 INIPPLRLRAEDIPALVRHFVAVKRRGLGIRGTPTISPGALARLQAYAWPGNVRELENVV 423 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVL 631 ER ++ + G R L S RS+ ++ P + I VL Sbjct: 424 ERELVRSAG---------RGRELSFEELARSQARSAPSRHEAPPPRTLADVMAAHIEDVL 474 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 T G + GP GAA LG+ +TL +RM RLGI+ Sbjct: 475 AATGGKIHGPGGAAELLGVNESTLRNRMNRLGITYGR 511 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 171/374 (45%), Positives = 241/374 (64%), Gaps = 16/374 (4%) Query: 294 EENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQA 353 E +C ++ + A + L+ L+ EN L ++ + +I+ + Sbjct: 112 EYSCSFIKDMTQHFQTQEALRRALDEVQTLKNRLEAENVYLMNEIKLSNNFDEIVTGNPI 171 Query: 354 MEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE 413 LQ V+ VA +D++VLI GETG GKE+IARAIH LS RRD+PL+++NCAA+PA+L+E Sbjct: 172 FMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATLME 231 Query: 414 SELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 +ELFGH++GAFTGA GRF++ADGGTLFLDE+GDLP+ELQ KLLRVLQE E ERLGG Sbjct: 232 NELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGG 291 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 + TI V+VR++AAT+ DL ++ + +FRSDL+YRLNVFP++ PPLR+R EDIPLL +HF Sbjct: 292 AETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFV 351 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 + ++I+ IP + L + WPGN+REL+NVIERAV+++RGN L + + Sbjct: 352 KASCEKNGKSIELIPRHVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEIDSLPKMVI 411 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 + ER+ I++ L T V GP+GAA LG+KRT Sbjct: 412 AADAAPISP----------------LEVTEREHIIRALETTAWRVGGPKGAAEILGLKRT 455 Query: 654 TLLSRMQRLGISVR 667 TL +RM++LGI+ + Sbjct: 456 TLQARMRKLGINRQ 469 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 180/490 (36%), Positives = 263/490 (53%), Gaps = 26/490 (5%) Query: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 ++ + + L + + + S + + Q LQ Sbjct: 50 LNRINNYDLILLDLQMPKMDGFEVMAALKADHSMDYLPVLVLTAQPNHKLQALQAGAKDF 109 Query: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLA---HTSSTLFSEENC 297 P L+ + L + L + + L + ++ N Sbjct: 110 I----------SKPFDLVEVKTRIHNMLEVRLLYKKLEKNNITLEDIVQKRTVELTKTNL 159 Query: 298 QLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDL 357 QL I +R D + + L++ LQ EN L +++ +II S+ + + Sbjct: 160 QLGLEIEERKKAEASLRDTYTQIKQLKDKLQAENTYLQKEVARQFNFDEIIGSSKLLSQV 219 Query: 358 LQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELF 417 Q+V+ VA +TVL+ GETGTGK V+ARAIH S R+ +PL+ ++C +P +L+ESELF Sbjct: 220 FQKVEQVAPMHATVLLLGETGTGKGVVARAIHSRSSRKKRPLITVDCTTLPVALIESELF 279 Query: 418 GHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTI 477 G ++GAFTG+ + GRFE+ADGGTLFLDEIG++PLE+Q KLLRV+Q+ E ERLG RTI Sbjct: 280 GRERGAFTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRVIQDGEFERLGSPRTI 339 Query: 478 PVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMA 537 V+VR+IAATNR+L + V + +FR DL+YRLNVFP+ LPPLR R EDI LL HF K Sbjct: 340 KVDVRIIAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRKEDISLLVNHFLIKFN 399 Query: 538 RHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPT 597 + + + ID I +AL L WPGNVRELE+ IERAV+L+ G SL + L T Sbjct: 400 KKIGKQIDIITQDALNTLQQHQWPGNVRELESAIERAVILSEGKSLQILDRFESFDKLAT 459 Query: 598 LNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS 657 + E P+ E E + IV+VL++T + G +GAA LG+ +TL + Sbjct: 460 IEE-------------PSMKALVELEYEHIVKVLQQTGWRIEGNKGAALILGLNPSTLRA 506 Query: 658 RMQRLGISVR 667 RM++ GI+ + Sbjct: 507 RMRKQGITRQ 516 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 149/476 (31%), Positives = 243/476 (51%), Gaps = 28/476 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ + + + + L + DL L Sbjct: 5 IIIVEDDPAMRLGMNH----FLRAYGYEATSCDDGAKALSILDSE--IFDIAIVDLKLPG 58 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D L LL + + A+ + + + + + + Sbjct: 59 VDGLTLLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFT-----NEELLLV 113 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + +R +L++E LSE + I+ S M+++ ++D VAK+D Sbjct: 114 IERFLKFR-------TLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVP 166 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IA AI + S R++KP +KINCAAIP +L ESELFG++KGAFTGA T Sbjct: 167 VLIQGESGTGKELIANAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATET 226 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G+FE+A+GGT+F DEIGD+PL LQ KLLRV+++ + RLGG I +NVR I AT+++ Sbjct: 227 KKGKFELANGGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKN 286 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L ++++ +FR DLFYR+NV P+ +PPL++R EDIP+L + F + + + I Sbjct: 287 LKELIKAEKFREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPS 346 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A L+S+D+PGNVREL++ IERA+LL++ +++ + L + + + + Sbjct: 347 AYEALLSYDYPGNVRELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISN---- 402 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 + E+ I++ L+E AA +LG+ R L +++ GI Sbjct: 403 --FSLKECIENFEKNLIIKALQECGWK---KTEAAKKLGISRKALWEKIKFYGIEP 453 >UniRef50_Q7UK84 Probable two-component response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UK84_RHOBA Length = 654 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 171/558 (30%), Positives = 269/558 (48%), Gaps = 38/558 (6%) Query: 114 SQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLD-D 172 D LA + L WL Q A RL + + AV LD D Sbjct: 124 PADSDTLKMLATALGRFL--WLQRNHQNDARRLWQTSKMLQHA------AVWQQLDSDAQ 175 Query: 173 LIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQT 232 L+A +A ++ L D R + + + + ++ + Sbjct: 176 LLASMADCACEVLNCERATIFLWDKRTKKLIGRPAIGIEGGVLE-----VEDNAGIVGEA 230 Query: 233 LQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT-FGNHTPGALLLAHTSSTL 291 L + P A + + + + S L +P+ + G + Sbjct: 231 LHSGSPRW-WSAGGTDEGRVNRRIDQAQNFTTRSLLAVPMVNSRDQVIGVFEGINARPGD 289 Query: 292 -----FSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGD 346 F + + L +A +IA+ + +T+ ++ L ++ Q Sbjct: 290 HRNESFDAADVRTLTELAMHASIAIDSYRTRTDLTETRDRLVEQAAQSKP---------- 339 Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 +I +++++ + VA +D +VL+ G GTGKEV+A+ IH S RR+ P V +NCAA Sbjct: 340 LIGNHHSIQEIRRNATKVAPTDLSVLVLGSNGTGKEVLAQHIHYQSERRNGPFVAVNCAA 399 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 + +LLESELFGH+KGAFT A +T G+FE+A+GGTLFLDE+GD+ Q KLLRVL+E+ Sbjct: 400 LVETLLESELFGHEKGAFTDASDTRVGKFELANGGTLFLDEVGDMSAGGQAKLLRVLEEK 459 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 + R+GGSR IPV+VRVIAATN+ L +++ ++FR DLF+RLNV L LPPL R +D+ Sbjct: 460 VVVRVGGSRPIPVDVRVIAATNQPLQELISAKRFREDLFFRLNVVSLTLPPLSHRGDDVM 519 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LA+HF R + RA+ A ++S DWPGNVREL N +ER LT + + Sbjct: 520 ELAEHFLVDFCRQIGRAVPTFAASARDAMLSHDWPGNVRELRNTVERICYLTTTDVVEAS 579 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAAT 646 + + P+ S + +M + E + Q I +++ G + AA Sbjct: 580 DLM----MSPSATRASTVSPTMDDVDGNLNSATREFQIQHIERLIASCGGNM---TEAAG 632 Query: 647 RLGMKRTTLLSRMQRLGI 664 +LG+ R+ L +M++LG+ Sbjct: 633 KLGLHRSNLYRKMRQLGM 650 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 171/484 (35%), Positives = 252/484 (52%), Gaps = 36/484 (7%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D N + L + GE L + DL + + Sbjct: 4 VLVIDDEANLRKVLAAMLRRDGFDVTVAEN--GEQGLAE--FHKNGADIV--VTDLVMPK 57 Query: 252 RDPLLLLLASNGCESALLIPL-TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 + +L + + + T A+ + + + + + A Sbjct: 58 VGGMEVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAA 117 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 N A RS+ ++ II S ++++ + +D VA + ST Sbjct: 118 KTNESARRSVRPDVKARAA-----------------IIGDSSTIQEVYKIIDKVADTPST 160 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IA A+H S RRDKP +KINCAAIP +LLESELFG+++GAFTGA+ + Sbjct: 161 VLITGESGTGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTS 220 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+AD GTLFLDEIG++P+E+Q KLLR +QE E ER+GG +T V+VR++AATNRD Sbjct: 221 KPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRD 280 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L +E +FR DL+YRL V P+ LP LR+R D+P+LA+HF +K R +N+ I+ I + Sbjct: 281 LQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADD 340 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L + WPGN+RELEN+IER +L G + R + + L S++A Sbjct: 341 AMALLQGYAWPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVAS 400 Query: 611 LLHPTTPEN---------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 + PT E ER IV+ L ET G V AA L + R +L ++M+ Sbjct: 401 IDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGNV---TRAARLLQISRKSLQTKMKE 457 Query: 662 LGIS 665 G+ Sbjct: 458 FGLR 461 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 176/490 (35%), Positives = 257/490 (52%), Gaps = 31/490 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D N + L + E ++ + DL + + Sbjct: 8 ILVVDDEANLRRVLSAQLSRDGY-----EVHTAEDGEEGLAF-LKEHHIDLVITDLRMPK 61 Query: 252 RDPLLLLLAS-NGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + LL A+ S ++ LT A+ T + + + + + + Sbjct: 62 VDGMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFD-----QNEVRVV 116 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V A R + + + Q II +S +++L ++ VA + +T Sbjct: 117 VKKALRTRDLASADAT----RDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTT 172 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE++ARA+H+ S RRD+P +K+NCAAIP L+ESELFG+++GAFTGA+ + Sbjct: 173 VLISGESGTGKELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVAS 232 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+A GGTLFLDEIG++P E+Q KLLRVLQE E ER+GG +TI V+VR++AATNRD Sbjct: 233 KPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRD 292 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + + FR DLFYRLNV P+ LP LRDR DIP L HF K + ++I++I E Sbjct: 293 LKREIAAGTFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPE 352 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPT------------L 598 AL +L S WPGN+RELENV+ERA+L G + L + R T Sbjct: 353 ALERLASHAWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAA 412 Query: 599 NEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSR 658 + SA S+ L + ER I + L++T+G V AA L + R L + Sbjct: 413 ADTSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTHGNV---THAARLLKISRKGLQLK 469 Query: 659 MQRLGISVRE 668 M+ L + R+ Sbjct: 470 MKELNLRERD 479 >UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMI0_DESAH Length = 524 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 175/513 (34%), Positives = 274/513 (53%), Gaps = 7/513 (1%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 D + ++T + L++D + + I F ++ V+ + ++ +DL+ Sbjct: 3 DENVFFKNVTRLICGDLEIDKALKECLDYIRAFIPADAMGFVIYLPEQKMFETIARADLA 62 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 + + +T + D + + +G SA++I Sbjct: 63 GADTRSVKFPADTFYQNRMKTDFSAPRITVAHPGDPEDYTLKFIRQAGWMDGL-SAIMIE 121 Query: 272 LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQEN 331 + GAL + + +++ +L+ + + IA+ N +R + +L+ L + Sbjct: 122 MVLTGKRMGALPMISKKQIRYEKKHIRLISLLNEPFGIALTNCLRYRKVKELKNRLLDDK 181 Query: 332 HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 L ++L ++ I +I+ ++ +++ V VA +S VL+ GETG GKEVIA+AIH Sbjct: 182 RYLEKELF-HVNIQEIVGSDGGLKGVMESVAQVAALNSPVLLLGETGVGKEVIAKAIHMA 240 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S RR P +K+NC AIP SL++SELFGH+KGAFTGA++ GRFE A GT+FLDEIG+L Sbjct: 241 SGRRSGPFIKVNCGAIPESLIDSELFGHEKGAFTGALSRKLGRFERAHLGTIFLDEIGEL 300 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 PL+ Q +LLRVL++ EIER+GG T+ ++ RV+AATNRDL M+++RQFR DL++RL VF Sbjct: 301 PLDAQTRLLRVLEDMEIERVGGDETVSIDSRVLAATNRDLDAMIKNRQFREDLYFRLKVF 360 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRA-IDAIPTEALRQLMSWDWPGNVRELENV 570 P+E+PPLRDR DIP L +F K A+ + I A+ +L LM++DWPGN+RELEN Sbjct: 361 PIEIPPLRDRKTDIPALVHYFMHKKAKEIAFPGIPALALNSLPILMAYDWPGNIRELENA 420 Query: 571 IERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQV 630 +ERA++ RG L+ + L I + Sbjct: 421 VERALITCRGMPLSFDDLATAIGPKKGMIAPKDTDVEATDGLSTLNAAAA----SHIRKA 476 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 L++ G V GP GAA L + TL +M+RLG Sbjct: 477 LQKCRGRVEGPHGAAVLLDVHPATLRQKMRRLG 509 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 157/471 (33%), Positives = 240/471 (50%), Gaps = 8/471 (1%) Query: 198 RKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLL 257 + + + E + + D L Sbjct: 6 QGGIMTYRVLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLK 65 Query: 258 LLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAW 317 + SN + + + L + + ++ + Sbjct: 66 VPGSNSIDFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVK 125 Query: 318 RSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGET 377 R++ SL EN L + L G+II S ++ + L+ V V ++DSTVL+ GE+ Sbjct: 126 RALK--VSSLTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGES 183 Query: 378 GTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEI 437 GTGKE+++RAIH S R+ P V +NCAAIP +LLESELFG++KGAFTGA T +GRFE+ Sbjct: 184 GTGKELVSRAIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFEL 243 Query: 438 ADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVED 497 A GGT FLDEI ++ +Q K+LR+++ +E+ERLGG+ TI V+VR+I ATNRDL QMV++ Sbjct: 244 AAGGTFFLDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKE 303 Query: 498 RQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557 +FR DL+YR++VFP+ LP LR+R DI L+KHF + M + + +E + L+ Sbjct: 304 GKFRDDLYYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIK 363 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRL---LPTLNEDSALRSSMAQLLHP 614 W GN+REL+N+IERAV+L + + P LNE+ + +S+ + P Sbjct: 364 HKWEGNIRELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPP 423 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 D+ E+Q + + L + + AA LG+ R T R+Q+ GIS Sbjct: 424 NGLSLDDLEKQLVAKALERSKNNI---TKAAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 142/480 (29%), Positives = 235/480 (48%), Gaps = 24/480 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ + + + SL + + GE + + DL + + Sbjct: 7 ILVVEDQDAMRESLLIAFKD--EGYHVECVSSGEGAIKKL---SDGNVYDLVVTDLKMKK 61 Query: 252 RDPLLLLLASN-GCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 + L +L A + +I +T A+ + + + + Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRY----------- 110 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 ++ L++ L ++ + II S M ++L+ V++++ST Sbjct: 111 -QEMLKVAKNALEKKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTEST 169 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IARAIH PR P V INC A+P +L ESELFGH KG+FTGA+ Sbjct: 170 VLITGESGTGKELIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKE 229 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G F A GT+FLDEIG+ Q KLLR LQ+ EI ++GG+++I V+VR+IAATN + Sbjct: 230 KVGLFHHAHKGTIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNEN 289 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + V +FR DLFYR+NV + LP L++R EDIPLL +F + + + Sbjct: 290 LERAVNQGRFRKDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGS 349 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L+++DWPGN+REL+N++ERAV L++ + + + N + ++ Sbjct: 350 AMAVLLNYDWPGNIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKS 409 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 + E+E+ IV+ + + G + LG+ TTL ++++ I + + Sbjct: 410 SI---VETLSEQEKNAIVEAMNKYGG---NQTKVSQVLGISTTTLWRKIKKYKIKPQHEI 463 >UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRC3_9SPHI Length = 657 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 170/574 (29%), Positives = 269/574 (46%), Gaps = 21/574 (3%) Query: 108 HGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSH 167 ++ T L V + L ++ R L++I+ + Sbjct: 90 EEAKKTEPYGFLVKPFREKDLLVALDIALYLHKNRLESKLRQEALLERQLLEISQ---NA 146 Query: 168 LDLDDLIADVAREIHHFFGLASVSMVL--GDHRKNEKFSLWCSDLSASHCACLPRCMPGE 225 L+ +AR I + + + L + Sbjct: 147 LNAKQTFLQIARAIRTVIPFDLIVCGTRPFTASRFGDYGYLRVGLDDYQFIGRDELLTIS 206 Query: 226 SV---LLTQTLQTRQPT-----LTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNH 277 + L+ ++ + A + L L ES L+ P+ + Sbjct: 207 GLKSDALSNIIENSHTDTHVATYNNNATTDVVHLTPLQKLWLTIYNLESYLVFPVALSDG 266 Query: 278 TPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ--QENHQLS 335 + ++++ + +L + A + L +++ + Sbjct: 267 SWVHYTFYSRRREMYTQSHLAMLTGFISSLTKATEKLVQSDLSSTYTTRLSVDRKHDRAQ 326 Query: 336 EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 + S II + L V VA +++VLI GE+GTGKE IA+AIH LS R+ Sbjct: 327 DSQGSVPKFKGIIGNHPLLLAALDLVTQVAPYNTSVLILGESGTGKESIAQAIHSLSVRK 386 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 P +K+NCAAIPA+L+ESELFGH+KGAFTGAI +G+FE + GTLFLDEIG++PL++ Sbjct: 387 TGPFIKVNCAAIPAALIESELFGHEKGAFTGAIEKRKGKFEQSHEGTLFLDEIGEMPLDM 446 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q +LLRVLQE+EI+ +GG V+VRV+AATNR+L + V + +FR DL+YRLNVFP+ L Sbjct: 447 QVRLLRVLQEKEIDPVGGKSPKKVDVRVVAATNRNLEREVAEGRFRLDLYYRLNVFPITL 506 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLR+R DI L+ + + + ++ + I + +L + WPGN+RELENV+ER+V Sbjct: 507 PPLRERKSDIQALSVYVANRFCKEFSKDFNGISAGMMDELEGYTWPGNIRELENVLERSV 566 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETN 635 +L G S + + D + L E ER+ ++ VL+ T Sbjct: 567 ILNDGQS------ELELKQSLLGTTDKVPSKVAIETLGDVRRIQRETEREYLISVLKNTK 620 Query: 636 GIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 G++ G GAA L +K TTL +R+ +LGI ++ Sbjct: 621 GLIRGANGAAELLHIKPTTLEARLAKLGIQREDL 654 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 185/516 (35%), Positives = 269/516 (52%), Gaps = 13/516 (2%) Query: 155 RVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH 214 R L+++ A S D L+ + ++ L K + + S ++ Sbjct: 16 RDLLELATAEDSVGD---LLRRGLDWLTRVVRFDLATVFLL---KEGRLVAVAARGSLAN 69 Query: 215 CACLPRCMPGESVL-LTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT 273 +P L Q L+TR+ +D DP +L S +++PL Sbjct: 70 AKVRQHSLPLSEFPSLRQALETRRAK-AFTEEDHAHGDGDPFDGVLDLPPGHSCMVVPLC 128 Query: 274 FGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQ 333 G+ G L L + + L++ +A A+ +A+ + L + Sbjct: 129 AGDRCYGVLSLDRAECETYPQPVVDLVEVYGQMLATAIQSAEQRATFERLHRQDHEHAKL 188 Query: 334 LSEQLLSNLGIGDII--YQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 L QL + I+ +S M DL ++ VA++D+ VLI GETGTGKE +ARAIH+ Sbjct: 189 LEAQLGGDS--EGILETSKSPVMRDLARRARQVAETDTPVLITGETGTGKERLARAIHRW 246 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 S R D+P V +NCAAIPA LLESELFGH KGAFTGA GRF++A GGTL LDE+G+L Sbjct: 247 SARADQPFVTLNCAAIPAGLLESELFGHVKGAFTGATKDRAGRFQMAHGGTLLLDEVGEL 306 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 P +LQ KLLR LQE+ E +G +T+ +VR++AAT+ DL Q + ++FR DL+YRL+VF Sbjct: 307 PFDLQAKLLRALQEKTFEPVGSDKTVRADVRILAATHVDLQQAIAQKRFREDLYYRLSVF 366 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 PL LPPLR+R ED+P L ++ A R + E L +L +++WPGN+REL N + Sbjct: 367 PLRLPPLRERREDLPQLCAFLLEEQANRTGRRGMRVTPEGLVRLEAYEWPGNLRELANAL 426 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNE-DSALRSSMAQLLHPTTPENDEEERQRIVQV 630 ERA +LTRG L +R + + +R+ I++V Sbjct: 427 ERATILTRGTELGPESFDVPTRGAAVVAALPEEPAPAAGGPKRGPVLTLAAVQREHIMRV 486 Query: 631 LRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 L T G V G GAA LG+K +TL SRM++LGI+ Sbjct: 487 LTLTRGRVYGANGAAALLGLKPSTLQSRMKKLGIAR 522 >UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 Tax=Proteobacteria RepID=A0L6X2_MAGSM Length = 550 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 170/533 (31%), Positives = 268/533 (50%), Gaps = 28/533 (5%) Query: 152 DHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLS 211 L + + +L ++ V + G++ + L D D + Sbjct: 27 SQLEALYQVGRILAEEGNLTAVLDGVLEAVEKMGGMSKSIITLSDPETGRLLVRAVHDSN 86 Query: 212 ASHCACLPR---CMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 PGE V+ +Q + + + LL + Sbjct: 87 EGFAPLGGDDIVYRPGEGVM-GSIMQNGNTFICELPANEQRFLHRLGLLDPTL----PFI 141 Query: 269 LIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDL--QE 325 +PL G L + F E L+ +A+ ++ V + + + L + Sbjct: 142 GVPLFLDAKPIGVLAAQPVFGNRAFLREQAHFLEMVANLVSQKVRSNQRYEQLQALLSSQ 201 Query: 326 SLQQENHQLSEQLLSNLGIGDI----IYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 ++ + +S + + + ++ +M+ ++ A+ DSTVL+ GE+GTGK Sbjct: 202 AVGRSTTAMSTAIRIENERSGMQPVLLGKAASMKQVVNMALKAAQFDSTVLVLGESGTGK 261 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E++A +H S R +P VK+NCA++ +LLESELFGH+KGAFTGAI T +GRFE+ADGG Sbjct: 262 ELVANTVHYNSARASRPFVKVNCASLSDNLLESELFGHEKGAFTGAIATRKGRFEMADGG 321 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDEIG++ Q KLLRVLQE E ER+GG+RTI VNVRV+AATNRDL V+ FR Sbjct: 322 TLFLDEIGEISPSFQAKLLRVLQEGEFERVGGARTIKVNVRVVAATNRDLSAEVQKGNFR 381 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 +DLFYRL+V P+E+P LR+R ED+PLL + ++++ +R + +I EALR+LM ++W Sbjct: 382 ADLFYRLHVLPIEIPALRERMEDLPLLTEALLERISTKQHRPL-SITKEALRRLMMYEWA 440 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNED-------SALRSSMAQLLHP 614 GNVRELEN +ERA +L+ ++ + S +A ++ Sbjct: 441 GNVRELENCLERAAVLSDEGHIDASHIIFSSGANREPMPALTNHRIHNASSCALPSSADL 500 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + P + ER+R++ L ++ + AA LGM + R++ L I +R Sbjct: 501 SDPTLE--ERERVMGALEQSGWV---QAKAARLLGMTPRQVAYRIKILNIPMR 548 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 163/478 (34%), Positives = 245/478 (51%), Gaps = 28/478 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D +N + L + ++ +QP D+ + + Sbjct: 11 VLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVA-----KQP-FDFILCDIKMPR 64 Query: 252 RDPLLLLL-ASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D L L + A +I ++ A+ + + + + +D + +A Sbjct: 65 MDGLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFK-----SDEVLLA 119 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQ---LLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 + A +E L++EN L +Q L G II +S+AM+ + + VA Sbjct: 120 LKKA-------SERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAH 172 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 D+TVL+ GE+GTGKE++AR++H SPR L+ +NC IP +LLESELFGH KGAFTGA Sbjct: 173 DTTVLVTGESGTGKELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGA 232 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 G EIA GTLFLDEIG+LP LQ KLLR+LQ+REI +G S T +++R++AAT Sbjct: 233 DKNKTGLCEIAHKGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAAT 292 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 R+L V + FR DLFYRLNV + LPPLRDR EDIPLL + F Q+ + +++ I + Sbjct: 293 ARNLEADVAEGVFREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGL 352 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 AL +L++ WPGNVRELEN+IERAV+L G+++ AL Sbjct: 353 APAALSRLLAHTWPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGF 412 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + E++ I + L +T G + L + +LL++M+ GI Sbjct: 413 DGYSIKAAQKI---FEKRLIEKALAKTGG---NRTRTSKLLEISHPSLLAKMKEYGIE 464 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 163/478 (34%), Positives = 255/478 (53%), Gaps = 20/478 (4%) Query: 193 VLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQR 252 ++ D + S+ S ++ +Q L D+ + + Sbjct: 8 LIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLV--LMDVKMPEM 65 Query: 253 DPLLLLLASNGCES-ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV 311 + L L A + ++ +T ++ A++ + + E+ Q ++A V Sbjct: 66 NGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQ-----PQQLAEIV 120 Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 + R + SL N + + S +I+ S M+++ + + K D+TV Sbjct: 121 RKSLEARDLI---SSLAMSNPVFDDDIES-----EIVGGSSKMKEVFNLIYRLCKVDTTV 172 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 L+ GE GTGKE++ARAIH SPR+ V INC AIP +L+ESELFGH+KGAFTGA+ Sbjct: 173 LVRGENGTGKELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERK 232 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 G+F++A+ GTLFLDEIG+L ++Q KLLRVLQER+ +G +R + R+IAATNR+L Sbjct: 233 IGKFQLANNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNL 292 Query: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 +M+E+ +FR DLFYRLNV P+ LPPLR+R +DI LA +F +K ++ R I AI EA Sbjct: 293 EKMMEEGEFREDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEA 352 Query: 552 LRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQL 611 L L S+ WPGN+RELEN+IER+ ++ + + + +L P D + Sbjct: 353 LDMLKSYRWPGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGP 412 Query: 612 LHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 L +E E++ IV L+ NG + A + + TLL ++++ GI+V+E Sbjct: 413 L-DFDAFKEEMEKEFIVSALKANNGRINQTVAQA---NIPKNTLLRKIRKYGINVKEY 466 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 159/453 (35%), Positives = 244/453 (53%), Gaps = 16/453 (3%) Query: 141 QVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN 200 ++ E L +++ + S LDL+ + DV + + + + L D ++ Sbjct: 12 RLPPSPAEDSSLPLLTLYEVSKILGSTLDLEHSLHDVLNVLASYMQMRRGVVTLKDAQR- 70 Query: 201 EKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLA 260 + + S ++ + P + + + T P + + Sbjct: 71 QLEVVAVSGMTLRNAVEGEARYPLA--VAQEVVSTAMPMIVPSMAADPRFAAFAAEADGL 128 Query: 261 SNGCESALLIPLTFGNHTPGALLLAH---TSSTLFSEENCQLLQHIADRIAIAVGNADAW 317 + +S + +P+ G G+L + + E + + L +A IA V Sbjct: 129 DDEVQSMICVPIKGGVKPFGSLSIERHRDRGTRFKFEHDVRFLTMVATLIAQTVS---LE 185 Query: 318 RSMTDLQESLQQENHQLSEQLLSNLG------IGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 R + ++ L +E +L + L + +++ +S AM + QV +A S +TV Sbjct: 186 RRVVGDRDRLIEEKARLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATV 245 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 L+ GE+GTGKE+IA+AIH LSPR DKP +K+NCAA+P +LLESELFGH+KGAFTGA Sbjct: 246 LLRGESGTGKELIAQAIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTGATTER 305 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 +GRFE+A GGTLFLDEIG++ + Q KLLRVLQE E ER+GG +TI V+VR++AATN+DL Sbjct: 306 KGRFEMASGGTLFLDEIGEITVHFQAKLLRVLQEGEFERVGGGKTIKVDVRLVAATNKDL 365 Query: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 V +FR+DL+YR+NV P+ LP LR+R ED+PLLA+ F K R++ A Sbjct: 366 EDAVTRGEFRADLYYRINVVPIFLPALRERREDVPLLAQFFLTKFNEENGRSL-RFSEGA 424 Query: 552 LRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 L + ++PGNVRELEN + RA L + + Sbjct: 425 LTAMGGCNFPGNVRELENCVCRAATLAQDEVIQ 457 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%) Query: 591 QSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGM 650 + + SA + A E+D +R+RIV + + + AA LGM Sbjct: 525 PGESADSPSSPSAPPPAAAPAAEDGEDESDAGQRERIVHAMEKAGWV---QAKAARLLGM 581 Query: 651 KRTTLLSRMQRLGISVREV 669 + +++ I ++ + Sbjct: 582 TPRQIGYALKKHDIPLKRM 600 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 155/471 (32%), Positives = 245/471 (52%), Gaps = 37/471 (7%) Query: 194 LGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRD 253 + S + + E + T + L D L D Sbjct: 4 ILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILL----DYRLPGMD 59 Query: 254 PLLLLLASNGCE-SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVG 312 + LL CE S + LT A+ + + + + + + I A+ Sbjct: 60 GIDLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDT-ELLLNVIKEAIE 118 Query: 313 NADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVL 372 + + + ++ +II +S+ ++++ + +VA+S++ VL Sbjct: 119 KSKGIQKLEKIE-----------------TPFPEIIGKSKTIQEIFYIMQMVAESNANVL 161 Query: 373 ICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR 432 I GE+GTGKE++ARAIH+ S R+ KP + ++C IP +LLESELFGH+KGAFTGA Sbjct: 162 ITGESGTGKELVARAIHKNSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKT 221 Query: 433 GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLW 492 G E+A+ GT+FLDEIG+LP+ LQ KLLR LQE+EI+R+G ++ I V+VRVI+ATN+DL Sbjct: 222 GLIELANEGTVFLDEIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLE 281 Query: 493 QMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEAL 552 + +++ FR DL++RLNV + LPPLR+R EDIPLL HF K ++ N+ I + E + Sbjct: 282 KAIKEGSFREDLYWRLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVM 341 Query: 553 RQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLL 612 L+++ WPGN+REL NVIERAV+L+ +++ R+ + ++ ++ Sbjct: 342 NALINYYWPGNIRELANVIERAVVLSPSGLISIKHLPRRIQ-----------ENTGWTII 390 Query: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 T E E+ I++ L T AA LG+ R L ++M+ G Sbjct: 391 KENTFNLLEVEKALILKALNSTGW---NQTKAAEILGISRKQLRTKMKHHG 438 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 165/542 (30%), Positives = 268/542 (49%), Gaps = 32/542 (5%) Query: 122 WLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREI 181 + + S + ++ + ++ R L + +L DL+ L+ + E Sbjct: 102 PASPPRELIHTSNPDSHTSEL-PGVPGRELLLLRRLTAFSERLLGLYDLERLLEGLMDEA 160 Query: 182 HHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLT 241 ++L ++ + ++S + ++ + ++ ++ + Sbjct: 161 IEVTRADKGFLILMEN--GDPRVKVARNVSRENIEDAVEKDKISDSIIAKVVKEQKALIV 218 Query: 242 HRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTS-STLFSEENCQLL 300 A D + + ++ L S + +PL G L + + F ++ +L Sbjct: 219 ADALDSPEFNKSESVVNLR---VHSVMCVPLMQKGDLFGVLYVGNDRLVNRFEPKSADML 275 Query: 301 QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQ 360 A + ++ + NA L+ +N +L +L GDI+ Q M D+ ++ Sbjct: 276 TIFAAQASLILQNAMLVSD-------LKLDNTELRRKLEDQ-RYGDIVGACQGMRDVYKR 327 Query: 361 VDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHD 420 +D +A +D +VLI GETGTGKE+IAR IH+ S R P + INC AIP +LLESELFGH Sbjct: 328 IDKIAPTDISVLITGETGTGKELIAREIHRRSTRAKGPFITINCGAIPENLLESELFGHV 387 Query: 421 KGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVN 480 KGAFTGA+ T G+F+ A GGTLFLDEIG++PL+LQ KLLR LQE+ + ++G +R PV+ Sbjct: 388 KGAFTGAVATKAGKFQAAIGGTLFLDEIGEMPLQLQVKLLRALQEKVVYKVGDNRGEPVD 447 Query: 481 VRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHM 540 +RV+AATN+ L V+ FR DL+YRLNV L+LPPLR+R ED+ +L + F QK AR Sbjct: 448 IRVVAATNKVLEDEVKKNTFREDLYYRLNVVTLKLPPLRERGEDVVVLGRFFLQKYAREF 507 Query: 541 NRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE 600 + A + + WPGN+RELEN +++AV+L L + L Sbjct: 508 SSKARGFTPSATVSMRKYGWPGNIRELENRLKKAVVLADKPLLGPDDLDLKPENL----- 562 Query: 601 DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 + + P +E +++ I +VL NG A LG+ T+ ++ Sbjct: 563 ---------EPIMPLLQAKEEFQKRYINEVLARNNG---NRTKTAKDLGVDPRTIFRHLE 610 Query: 661 RL 662 +L Sbjct: 611 KL 612 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 165/556 (29%), Positives = 263/556 (47%), Gaps = 50/556 (8%) Query: 128 TPVLQSWLNDEEQQVALRLLEKDRDHH---RVLVDITNAVLSHLDLDDLIADVAREIHHF 184 P +Q L + + R L + +++ +D+L+ + ++ Sbjct: 102 APTVQERLPACDGGAERPAPLQGSSELAGVRKLFAFSEKLINRRSVDELLEAMLDDVIEL 161 Query: 185 FGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMP------------------GES 226 ++L + + + A+ A R + Sbjct: 162 THADKGFLLLLEGAEAAADTAVNGGAPAAPAAGGDRKLAVRASRNIRKEAITDAAGGISD 221 Query: 227 VLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAH 286 ++ Q + + +P + A + R ++ + S + PL GAL + + Sbjct: 222 SIVRQVIVSGRPVIVSDALADTQFGRSDSVI---AMKLSSVMCAPLLSQGQIIGALYVGN 278 Query: 287 TS-STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG 345 LF LL A + ++ + NA ++ + L E H + G Sbjct: 279 DKIKHLFDRAQLDLLSIFASQASLILQNAMLLNALRADKAKLVAELH--------DKKFG 330 Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +II +M ++ +++ VA +D +VLI GETGTGKE+IAR +H+ SPR P V INC Sbjct: 331 EIIGACPSMLEVFRKLQKVAATDISVLITGETGTGKELIARELHRRSPRDGGPFVTINCG 390 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 AIP +L+ESELFGH KGAFTGAI + G+F+IAD GTLFLDEIG+LPL LQ KLLR LQE Sbjct: 391 AIPENLIESELFGHVKGAFTGAIASRPGKFQIADKGTLFLDEIGELPLNLQVKLLRALQE 450 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 R + R+G S+ V++R++AATNR+L + + FR DL+YRLNV L LPPLR+R +D+ Sbjct: 451 RVVFRVGDSKPEKVDIRIVAATNRNLEEEIRAGNFREDLYYRLNVVNLWLPPLRERGDDV 510 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 ++AK K A + A+ AL + + WPGN+R+LEN I++A++L L + Sbjct: 511 LIIAKVLLSKYADELGSAVRGFSPAALSAIKKYPWPGNIRQLENRIKKALVLCDQALLAV 570 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 L + P +E +R+ +++ L NG A Sbjct: 571 EDL--------------DLGPGAETAIMPLEKAKEEFQRRYVLEALERNNG---NRTQTA 613 Query: 646 TRLGMKRTTLLSRMQR 661 LG+ T+ +++ Sbjct: 614 RDLGVDPRTIFRYLEK 629 >UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=C5BI62_TERTT Length = 642 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 179/583 (30%), Positives = 293/583 (50%), Gaps = 40/583 (6%) Query: 86 DYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALR 145 Y + + + + ++ ++ + + A ++++ L E + + Sbjct: 100 SYMAAELHAARAVLKKREYLVVTLRSISNDELSRNKAEAD---RLVRNGL-LEWKHLESV 155 Query: 146 LLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSL 205 + +R++ +L + + + +D L + G D + Sbjct: 156 FRQGERENLLMLTSVGDGIY-CVDTHGLCTFINPAAKRLLG-------RTDSDVLGQNIH 207 Query: 206 WCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE 265 + H P E + ++ + H W+ D + Sbjct: 208 YVHH----HTHEDGSHYPVEECPIYAAIRDG---IVHEGRQEVFWKHDGTPFPVE----- 255 Query: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 P+ + GA+++ + I++RI +A R +++L+ Sbjct: 256 -FTSTPIIANSTIIGAVVV---------------FRDISERIETQRQLENALRELSELKA 299 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 L+ EN L ++ L II + ++ + QQ+++VA++++ VL+ GE+GTGKE+IA Sbjct: 300 RLEDENAYLQQEYLIERNYHGIIGEGAGIKRIKQQIELVAQTEANVLVYGESGTGKELIA 359 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 +AIHQ S R DKP++++NCAAI L ESE FGH KGAFTGA+ GRFE+A+GGTLFL Sbjct: 360 QAIHQASRRADKPMIRVNCAAIAHELFESEFFGHIKGAFTGALRDRIGRFELANGGTLFL 419 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DE+G++PLELQ KLLRVLQE ++ER+G +T V+VR+IAATNRDL + +FR DL+ Sbjct: 420 DEVGEIPLELQSKLLRVLQEGQLERVGEEKTREVDVRIIAATNRDLKAEADQGRFREDLY 479 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +RLNVFP++ PLRDR EDI LLA H+ +++ R + L+QL + WPGNVR Sbjct: 480 FRLNVFPIQAVPLRDRREDIGLLAAHYLEQLCHKFPRQQCKLTQRDLKQLRDYAWPGNVR 539 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 EL+NV+ERAV+ +R LNL L + + S+ + + + + Sbjct: 540 ELQNVLERAVITSRAGRLNLDLPQHNHQDNAQPTLPALNTESITETEILSDDDMQALVKH 599 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 ++ L ++ + G GAA LGMK TTL SR++R+G+ Sbjct: 600 NMLAALEKSGWKLFGSDGAAALLGMKPTTLASRIKRMGLKPSR 642 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 171/476 (35%), Positives = 248/476 (52%), Gaps = 21/476 (4%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 +++ D + + + H R R+ DL + Sbjct: 29 ARILIADDHDAVREGMAIALSRLGHDVLAVR------GGAEAIAAYRKKPADVVVTDLRM 82 Query: 250 WQRDPLLLLLASNGCES-ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 D + ++ + A ++ ++ A+ + F E+ D + Sbjct: 83 VPVDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFS-----PDVLR 137 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 V + + + L E L + ++ S+ M +L QV VA + Sbjct: 138 ARVEKSIEIARERKGARTARARAEALEEDLGRDRA-HGLVGSSEPMRRVLDQVRKVASTG 196 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 +TVL+ GE+GTGKE++ARAIH SPRR++P V I+CAAIP LLESELFGH+KGAFTGAI Sbjct: 197 ATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAI 256 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 GRFE+A+GGTLFLDE+G++P +Q KLLRVLQER+ ER+GG T+ V+VRV++ATN Sbjct: 257 RRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATN 316 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 R+L QMVE +FR DL+YRLNV P+ LPPLRDRP D+ LA+ F ++A M+RA+ + Sbjct: 317 RNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLA 376 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 EAL L WPGNVRELENVIE+A++ G + R P A + Sbjct: 377 PEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAP-----PAPSLPV 431 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 T ++ ERQ I+ + G+ A LG+K + L ++++ GI Sbjct: 432 PSGDRSLTDILEDLERQLILAAYEKARGV---KAETARLLGIKPSALYYKLEKYGI 484 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 155/449 (34%), Positives = 232/449 (51%), Gaps = 16/449 (3%) Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 + + + PT+ D+ + + LL + + + Sbjct: 27 QREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDVEVIMMTA 86 Query: 276 -NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 A+ + + + + + ++ +A A +++L+ L Sbjct: 87 FATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKA-----------AERKALKDRTRAL 135 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 E L D+I QS M + + V+ V+ S +TVLI GE+GTGKE++ARAIH S R Sbjct: 136 EEALTVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSAR 195 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 +DKP V +NC+A+ +LLESELFGH KG+FTGA +G FE ADGGT+FLDEIGD+P Sbjct: 196 KDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPA 255 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 Q +LLRVLQE E++R+G + + V+VRVIAAT+ DL + E +FR DLFYRLNV ++ Sbjct: 256 TQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITID 315 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 LPPLRDRPED+PLLA HF + A ++ + I A+ L W GNVRELENVIERA Sbjct: 316 LPPLRDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERA 375 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSAL-RSSMAQLLHPTTPENDEEERQRIVQVLRE 633 V+LT +++ + P + + + ER+ + +L + Sbjct: 376 VVLTGNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEK 435 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 N V+ AA G+ R+ +++ Sbjct: 436 NNQNVSS---AARAAGVDRSNFRRLLKQY 461 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 202/522 (38%), Positives = 289/522 (55%), Gaps = 42/522 (8%) Query: 158 VDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCAC 217 VD A+ S + +DL A + + + ++S+++G N S WC Sbjct: 26 VDWRGAIGSIRNENDLFAFIHTVLRPYLH--TISVLIGIADGNGTISRWCHKTEGLTLLP 83 Query: 218 LPRCMPGE--SVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 LP+ + ++ L+ P +R L L ++G L++PL Sbjct: 84 LPQKVSEHFMQDNISGVLEMYAPD-----------RRSALQTTLFNSGVREMLILPLRNH 132 Query: 276 NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE----- 330 ++ G L L F + ++ A ++ A + L + LQ+E Sbjct: 133 TNSFGFLCLLAKHHNTFPKSLQISVKRYAGLLSAA---TLKLMLLDALPQWLQEEDMGGD 189 Query: 331 --NHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 L LL + I A+ ++QQV VA +D+TVL+ GETGTGKE+ A AI Sbjct: 190 GAELLLYNDLLPAKLVSGI-----ALRPVIQQVRQVAPTDATVLLTGETGTGKELFAEAI 244 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H S RR K VKINCAA+P L+ESELFGH+KGAFTGAI+ G+FE+A+GGTLFLDEI Sbjct: 245 HLSSMRRQKAFVKINCAALPPQLIESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEI 304 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+LPL++Q KLLRV+QE+EIER+GG+ TIPVNVR+IAATNR L + V +FR DL+YRL Sbjct: 305 GELPLDMQAKLLRVIQEKEIERIGGTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRL 364 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 VFP+ LP LR+R EDIPLL +HF + A + I I + ++ LM + WPGN+RE+E Sbjct: 365 YVFPIHLPALRERREDIPLLLQHFARNAAMKYGKPIRHIASGSVLALMDYTWPGNIREME 424 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIV 628 +++ERAV+ + + + + + L N S L E ERQ I+ Sbjct: 425 HMVERAVISSDEPQITIAVPGNRKALEADGNSLSPL------------LTLAETERQTII 472 Query: 629 QVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 + LR +NG + GP+GAA L +K TTL +RM++LGI V+ Sbjct: 473 RALRYSNGRIRGPQGAADLLDIKPTTLEARMKKLGIVKEHVV 514 >UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphaproteobacteria RepID=NIFA_RHIEC Length = 584 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 162/572 (28%), Positives = 279/572 (48%), Gaps = 59/572 (10%) Query: 147 LEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLW 206 + + + +I+ + + L+ +A+V + F + ++V+ D + Sbjct: 23 MRQAGTQRSGIYEISKVLTAPARLEITLANVVNVLSSFLQIRCGAIVVLDAE-GQPEIAA 81 Query: 207 CSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCES 266 D+ S + +P ++ T P + L+Q +P + S Sbjct: 82 TGDIPPSSQSAARGVIP--KAVIDHIATTGMPLIVKDVSKSELFQAEPQPPWSSGTVPIS 139 Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLFS---EENCQLLQHIADRIAIAVGNADAWRSMTDL 323 + +P+ N G + + + +E+ + L +A+ ++ + R + Sbjct: 140 FIGVPVKADNKILGTISIDRVRNDAAPFPADEDVRFLTMVANLVSRTI---RLHRFLNLE 196 Query: 324 QESLQQENHQLSEQLLSNLG---------IGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 E + + +++ G I II S A++ +++ V +VA+++STVL+ Sbjct: 197 GRRPIGEQERPEKPIIAQRGAPGRHPPVKIDGIIGDSPALQQVVETVSVVARTNSTVLLR 256 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GE+GTGKE A+AIH+LSPR++KP VK+NCAA+P +LESELFGH+KGAFTGAI GR Sbjct: 257 GESGTGKEFFAQAIHELSPRKNKPFVKLNCAALPEGVLESELFGHEKGAFTGAIAQRAGR 316 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 FE+A+GGTL LDEIG++ Q KLLRVLQE E+ER+GG++T+ V+VR+I ATN++L Sbjct: 317 FELANGGTLLLDEIGEISPAFQAKLLRVLQEGELERVGGTKTLAVDVRLICATNKNLEMA 376 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 V + +FR+DL+YR++V P+ LPPLR+RP DIP LA + + R + + A+ Sbjct: 377 VANAEFRADLYYRISVVPIVLPPLRERPGDIPRLANALLDRFNKENQREL-TFSSSAIEV 435 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN-------------------------- 588 + +PGNVRELEN + R L R +S+ Sbjct: 436 MSQCYFPGNVRELENCVRRTATLARSSSIVSSDFACKNSQCLSSLLWKTDGSPGGITVDG 495 Query: 589 -----------VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGI 637 R + +E S++++ E+ +R R+++ + + + Sbjct: 496 HARSNVMPTSSPRSGGSIGASDEVSSVKACDPHGSGCPAMESRLTQRDRLIEAMEKAGWV 555 Query: 638 VAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 AA LG+ + +++ I V+++ Sbjct: 556 ---QAKAARILGLTPRQVGYALRQHRIEVKKL 584 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 155/527 (29%), Positives = 245/527 (46%), Gaps = 51/527 (9%) Query: 137 DEEQQVALRLLE-KDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFG-LASVSMVL 194 + + + L+E + + ++ +L + ++ + + ++ Sbjct: 83 RQIRGNSTALMEAQAANLMMAILKEKEELLEFKRIQGELSAILNSMQEAIEVADINGVIK 142 Query: 195 GDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDP 254 + + + + L L+T + R Sbjct: 143 YVNPAFSRIT----GIPEKERIGQNIFEASPDGALATVLKTGKVVFGQR----------- 187 Query: 255 LLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNA 314 + SN + P+ GA+ + + + Sbjct: 188 -TKVGGSNADVVSNSAPIVVDGKMEGAVCVFQHFTDI----------------------M 224 Query: 315 DAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374 + + ++ +L + S DII S + + + A+S+STVLI Sbjct: 225 NLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVLIL 284 Query: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434 GE+GTGKE++A AIH S RR+ P +K+NCAAIP +LLESE FG+ KGAFTGA+ + G+ Sbjct: 285 GESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKSKIGK 344 Query: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 FE+A GGT+FLDEIGD+ L LQ KLLRVLQE E ER+GG++TI V+VRVIAATNR+L ++ Sbjct: 345 FELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLREL 404 Query: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554 + +FR DL+YRLNV + +PPLR R ED+P L H + R + + + I +A Sbjct: 405 IRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDAEEV 464 Query: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 L S+DWPGNVRELENVIER ++ L ++ + M+ Sbjct: 465 LFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVN-----------QFRMSSERDV 513 Query: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 ++ E I + + + V G R AA L + TL +++++ Sbjct: 514 DLMPIEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 171/522 (32%), Positives = 249/522 (47%), Gaps = 36/522 (6%) Query: 164 VLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMP 223 + ++LD L+ V I ++ L D R S+ + Sbjct: 76 LTRGVELDALLVTVVDSIVEHLDAERGTLYLVDGRSRTLTSVVAHLPELERIR-----LD 130 Query: 224 GESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT-FGNHTPGAL 282 + Q + +D + D + S L +P+ G L Sbjct: 131 FGQGVAGTVAAQGQ--IIAVSDPGADPRFDASIDRQTGFSTRSMLALPIRDSAGEVIGVL 188 Query: 283 LLAHTSSTLFSEEN---CQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL 339 L + F+ + L A ++ A R+ + L+ E + E+ Sbjct: 189 QLLNAGRGQFTLADQAKATTLATSAGQVLQATSLYADLRARSPLEREADPEPSEAVEEPD 248 Query: 340 S---------NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQ 390 I+ +S+AM + V A +D+TVLI GE+GTGKE+IARA+H Sbjct: 249 PSQSQIRPGPKYTFNQIVGESRAMRQVYAIVRKAAGTDATVLITGESGTGKELIARAVHV 308 Query: 391 LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD 450 SPRR++ VK++C +P +L+E+ELFGH++GAFTGA T G+FE+ADGGTLF+DEIG+ Sbjct: 309 NSPRREQAFVKVDCTTLPEALIENELFGHERGAFTGAHRTAPGKFEVADGGTLFIDEIGE 368 Query: 451 LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510 LPL LQ KLLRVLQ+RE ER+GG+ TI ++RVI AT+RDL MV+ FR DL+YR+ V Sbjct: 369 LPLTLQGKLLRVLQDREFERVGGTTTIRTDIRVICATHRDLPAMVDAGAFREDLYYRVRV 428 Query: 511 FPLELPPLRDRPE-DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 P+ELPPLRDR D L +HF + R R I + A +L+ D+PGN+RELEN Sbjct: 429 VPIELPPLRDRGSADRLRLIEHFVDRYGRRHGRPIHRVTKAAQARLLEHDFPGNIRELEN 488 Query: 570 VIERAVLLTRGNSLNLHLNVRQSR------------LLPTLNEDSALRSSMAQLLHPTTP 617 IE AV+L+ ++++ R T ++ L T Sbjct: 489 CIESAVVLSDEGTIDVDDLPLAPRKAKRGRTQQGSVPTETGQSSGHSGPNLGLQLGDPTL 548 Query: 618 ENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 ER I V++ G AA RLG+ R TL ++ Sbjct: 549 SLAAIERAHIEAVVQACEG---NQSEAARRLGIGRNTLARKL 587 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 221/379 (58%), Gaps = 21/379 (5%) Query: 285 AHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGI 344 T N LL+ + V + + L ++L Sbjct: 117 DRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAE-----------LKKELKGRYAF 165 Query: 345 GDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404 G II QS+ M +L + +VA+S STVLI GE+GTGKE+IA AIH+ SPR+D P +K+NC Sbjct: 166 GKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVNC 225 Query: 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AA+ +LESELFGH +GAFTGA+++ GRFE+A GGTLFLDEIG++ +Q KLLRVLQ Sbjct: 226 AALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVLQ 285 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 E E ER+GG++T+ V+VRVIAATNRDL ++ FR DL+YRL V PL LPPLR+R ED Sbjct: 286 EEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERRED 345 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 IPLL F + + + + EA LM+ +PGN+REL+N+IE AVLL+ G ++ Sbjct: 346 IPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIG 405 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 + R +P SS A + + E I + + +T G ++ A Sbjct: 406 VRELPRDLAPIPE-------ESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMS---QA 455 Query: 645 ATRLGMKRTTLLSRMQRLG 663 A LG+ R+TL +++ +G Sbjct: 456 AKLLGIGRSTLWRKLREMG 474 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 160/470 (34%), Positives = 246/470 (52%), Gaps = 22/470 (4%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 + + +++ D K + + + + Q ++ + + D Sbjct: 1 METPKILIADDDKKTRDFVAAFLSYKGYQV----YQAFDGQDALQKIELHEVQMV--ITD 54 Query: 247 LFLWQRDPLLLLLASNGCESALLIPLTFGNHTPG-ALLLAHTSSTLFSEENCQLLQHIAD 305 + + + + L + ++ L + + E+ L + Sbjct: 55 IMMPRVNGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNL-----E 109 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 + V ++LQ ++ + + + + +II +S+ M L + ++ VA Sbjct: 110 ELETHVKRGLEH-------QALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVA 162 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 SDSTVLI GE+GTGKE++ARAIH LS R DK V +NCAAIP LLESELFGH KG+FT Sbjct: 163 TSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFT 222 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA+ + GRFE+AD GTLFLDEIGD+ LQ KLLRVLQ RE+E +G +R+ V+VR+IA Sbjct: 223 GAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIA 282 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATN++L MV ++FR DL+YRL+V P+ LPPLR+R D+PLL F +K R R + Sbjct: 283 ATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQ 342 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 + + L ++DWPGNVRELEN++ER V++ +++H + R T Sbjct: 343 GFDKQVMEILSNYDWPGNVRELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEP 402 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 ++ +E E + I+Q L ++ G + AA L +KRTTL Sbjct: 403 MTLPDDGFCLNSAVEEFENRLILQALEKSGG---NKKEAAELLNLKRTTL 449 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 147/423 (34%), Positives = 226/423 (53%), Gaps = 14/423 (3%) Query: 244 ADDLFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQH 302 D+ + + D L + + L I L + A+ + + + L Sbjct: 63 ILDIRMPEVDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNL--- 119 Query: 303 IADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362 D + I V A + +T L QE ++ ++ + G I+ +S ++++ + + Sbjct: 120 --DEVKIIVSRAIRMQQLTKEVVYLTQEVQEMG---MTAMTPGKIVGESSKIQEVYKIIG 174 Query: 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKG 422 VA S +TVL+ GE+GTGK ++A+AIH S RR+KP +++NC +IP LLESE+FGH+KG Sbjct: 175 RVANSKATVLLTGESGTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKG 234 Query: 423 AFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482 AFT A G+FE+A+GGTLFLDEI ++ LQ KLLRVLQE+E ER+GG++T NVR Sbjct: 235 AFTSAFFQKPGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVR 294 Query: 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR 542 +IAATNRDL + + ++ FR DL+YRLNV + LPPL +R EDI LLA +F ++ + + R Sbjct: 295 IIAATNRDLNKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGR 354 Query: 543 AIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 E L ++ WPGN+RELEN +E A++++ + ++ E Sbjct: 355 NGMFFAPEVLDIFRNYSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKV--EDVEAD 412 Query: 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 P E E++ I + + T G AA L + R LL ++ Sbjct: 413 GTIILGDDSFKPLREVLLEVEKRHISEAIERTGG---NRTQAAKLLQISRRALLYKINEN 469 Query: 663 GIS 665 I Sbjct: 470 NID 472 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 158/475 (33%), Positives = 248/475 (52%), Gaps = 32/475 (6%) Query: 189 SVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF 248 S+++ D KN + L + + + L DL Sbjct: 2 KFSILVLDDEKNIREGLQMALEDEG----YEVFTAEDGNTGVEIALKGDIDLI--ITDLK 55 Query: 249 LWQRDPLLLLLASNGCESALLIPL-TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRI 307 + + L+L + + I + T A+ H + F + L +R+ Sbjct: 56 MPRMSGELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDL-----NRL 110 Query: 308 AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 ++ V A R L ++ +L +Q+ + +I+ +S AM + V A S Sbjct: 111 SLLVRRALQNRE-------LIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAAS 163 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 ++VLI GE+G GKE+IA AIH LSPR+ KPL+K++CA+ +LESELFGH++GAFTGA Sbjct: 164 KASVLITGESGVGKELIANAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGA 223 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 +N +GRFE+A G++FLDEIG++ + +Q KLLRVLQER ER+GG TI V+VRVI+AT Sbjct: 224 VNRMKGRFELAHEGSMFLDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISAT 283 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 NR+L + ++ FR DL+YRLNV + +P LR+R ED+PLL F +++A + I +I Sbjct: 284 NRNLLEEIKRNLFREDLYYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSI 343 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 +A L ++DWPGN+R+L N IE AV+++ G +++ R L Sbjct: 344 DPQAQSALHAYDWPGNIRQLRNCIESAVIMSSGPVIHIEDLSEPIRSL----------GE 393 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + + P ++ E++ I+Q L G A LG+ R TL ++ + Sbjct: 394 TSSIRIPIGVSMEDAEKEIILQTLEAQKG---NKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 155/472 (32%), Positives = 245/472 (51%), Gaps = 31/472 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ + KN L + A G S Q + + D+ L Sbjct: 6 LLVVEDDKNTLDGLIQILRRDGYTAV------GVSSGYDALNQLSRESFDIVITDMKLPG 59 Query: 252 RDPLLLLLASNGCESALL-IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 L LL S++ + +T + A+ + + + + Sbjct: 60 MGGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDV----------- 108 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + ++ L +N L E+L +++ S M + + ++ VA S ++ Sbjct: 109 -EELELVLEKLREKQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTAS 167 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GETGTGKE++A AIH S R KP V ++CAA+ +LESELFGH+KGAFTGAI + Sbjct: 168 VLIMGETGTGKELVAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQS 227 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +GRFE+ADGGTLFLDE+ ++ L++Q KLLRVL++ E ER+GG +TI V+VR IAATNR+ Sbjct: 228 RKGRFELADGGTLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRN 287 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + V + +FR DLFYRLNV +++PPLR+R +DIP+L+ +F K A+ + I E Sbjct: 288 LEEEVSEGRFREDLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPE 347 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A++ L+S W GN+REL+N IERA++L + +++++ + Sbjct: 348 AIKALLSHHWQGNIRELQNTIERAIVLCKSDTISVDHLPESIM---------PDNEYIPV 398 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + P E E++ I + L+ TNG + AA LG+ + + + Sbjct: 399 IKIPIGTTLKEAEKEIIQRTLQITNG---SKQSAAKILGISTRKIEYKTKEW 447 >UniRef50_C0QC42 Putative transcriptional activator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QC42_DESAH Length = 922 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 202/581 (34%), Positives = 290/581 (49%), Gaps = 41/581 (7%) Query: 91 AVLLGSSGMAELRFIRTHGSRFTSQDCTL-----FNWLARIITPVLQSWLNDEEQQVALR 145 V L + + R GS+ ++ I P L E Sbjct: 377 PVQLAKTRIEIARLSIKQGSQPQARHMAQKAWKGLAGYGDIFFPDDLQHLLGVENGRDPD 436 Query: 146 LLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSL 205 L E + R I VLS+ DL++L+ + + F G + + +K + Sbjct: 437 LKEPETMLQRFTEMIDELVLSN-DLNELLTHTVKATNRFLGAERGGVFWFEDKKTPRLIA 495 Query: 206 WCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE 265 + ES + +T ++ + D + ++ + Sbjct: 496 AHNLF--------------ESDINNKTFRSSLELIFKAFHDNTPLIKHCKVVETLVGRTK 541 Query: 266 SALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQ 324 + L +P G L + FS N L +A ++ V + + +L Sbjct: 542 AMLAVPFEVKGTAKGILYHDNAYIDDCFSYFNKNELAGMASYLSKYVNH------LLNLT 595 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 ++++ + +L G +IIYQS M+ L+QVD +A +DSTVLI GETG GKE+I Sbjct: 596 RRIEEKTSKNYTRLGEISG-ENIIYQSLIMKKKLKQVDKIAGTDSTVLILGETGVGKELI 654 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 AR IH+ S R+D PLV ++ +IP +L+ESELFGH+KGAFTGA GR E+A GTLF Sbjct: 655 ARRIHERSLRKDYPLVVVDPTSIPETLIESELFGHEKGAFTGADKQRTGRVELAHKGTLF 714 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 +DE+G++PL +Q KLLR LQE+ I RLGGS TI + R+IAATNRDL + V FR DL Sbjct: 715 IDEVGEIPLSIQVKLLRALQEKTIVRLGGSTTIHSDFRLIAATNRDLQKEVAKGNFREDL 774 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 FYRLNV P+E+PPLR R EDI L+A++F +K N E L+ ++WPGN+ Sbjct: 775 FYRLNVIPIEIPPLRKRGEDILLIAEYFLKKFRMKYNFPTIEFTPENKVMLIEYNWPGNI 834 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER 624 REL N+IERAVLL+ + L + L + + P P DE +R Sbjct: 835 RELNNIIERAVLLSEEDQLEIELKTKNNSSHP-------------DDFFRDRPSLDEMQR 881 Query: 625 QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + I VL E NG + GP GAA RLGMKRT+L +RM+ LG+ Sbjct: 882 RYIGTVLEECNGQIGGPGGAAERLGMKRTSLYARMRTLGMR 922 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 171/394 (43%), Positives = 248/394 (62%), Gaps = 24/394 (6%) Query: 285 AHTSSTLFSEENCQLLQHIADRIAIAVGNADA--------WRSMTDLQESLQQENHQLSE 336 T + L++ + +A+ A+ + L++ L+ E L E Sbjct: 132 DVTDRVSYRRNLEGLVKKKTAELTVALEEAEEKNRIAETSLSEIKKLKQQLEAERAYLQE 191 Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 ++ II QS ++ +L +++ +A SD+TVL+ GETGTGKE++ARAIH LS R++ Sbjct: 192 EIKLEYNHEHIIGQSDGLKYVLYKIEQIADSDTTVLVLGETGTGKELVARAIHNLSRRKN 251 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 + ++K+NCAA+P +L+ESELFGH+KGAFTGA H GRFE+A+G TLFLDEIG+LPLELQ Sbjct: 252 RTMLKVNCAALPTNLIESELFGHEKGAFTGAHARHTGRFEVANGTTLFLDEIGELPLELQ 311 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 PKLLRVLQ+ E ERLG S + V+ R+IAATNR+L + V + FR DL+YRLNVFP+ +P Sbjct: 312 PKLLRVLQDGEFERLGSSHSTKVDARIIAATNRNLEEEVRNGNFREDLWYRLNVFPITMP 371 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 PLRDR +DIPLL + + +K++R M + I+ IP++ + L ++ WPGNVRELENV+ERAV+ Sbjct: 372 PLRDRLDDIPLLVEFYVKKISRRMGKTIETIPSKIMETLQAYPWPGNVRELENVLERAVI 431 Query: 577 LTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 + G L L +++ + L + ER IV+VL +T Sbjct: 432 NSSGTKLRLVDELKR----------------PFRGLSSSEKTLAAVERDHIVRVLEQTQW 475 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 V G AA LG+ R+TL +RM++L IS + + Sbjct: 476 KVGGKNSAAEILGLDRSTLRARMRKLNISPPKTI 509 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 164/477 (34%), Positives = 250/477 (52%), Gaps = 32/477 (6%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 + S ++ D ++ +L +D+ ++ + G L + +P + D Sbjct: 1 MGSARILAVDDERDTCEAL--ADMLSAWGHKVEIAFDGHDAL--RKANEFRPDVV--LSD 54 Query: 247 LFLWQRDPLLLLL-ASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 L + + D L LL ++ LT A+ + F + Sbjct: 55 LAMPETDGLWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLD-----TA 109 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 R+ + + A + ++L++ QL G D+I QS M +++ V+ VA Sbjct: 110 RLKVCIDRALEKKETMREVQTLRRRLKQL--------GSSDLIAQSVGMRKVIELVEKVA 161 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 S ++V I GE+GTGKEV++RA+H LS RRDKP + INCA+IPA+L+ESELFGH++GAFT Sbjct: 162 PSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFT 221 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA G FE+A GGTLFLDE+G++P+ELQ KLLRVL+E ++ RLGG I V+VRV+ Sbjct: 222 GADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLC 281 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATNRDL Q +++ +FR DL++RLNVF + LPPLR+R +D+P+L +HF K + + Sbjct: 282 ATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVS 341 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 + EA+ L ++DWPGN+REL N +ERAV+L G + + Sbjct: 342 GVHPEAMEVLKNYDWPGNIRELRNAVERAVILCDGELITREHLPPDM---------AGKS 392 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 P D ER+ I+ L+ A LG+ TL +++ R Sbjct: 393 PERHTFRLPFGLSLDAVEREYILGSLQRNGN---NKARTAEVLGVSEKTLYNKLNRY 446 >UniRef50_Q2LRC8 Transcriptional regulator containing sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRC8_SYNAS Length = 697 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 180/518 (34%), Positives = 269/518 (51%), Gaps = 33/518 (6%) Query: 153 HHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSA 212 R+L +I L + + ++ A + + D + + Sbjct: 210 RLRLLGEIFVNALERSRAWKALQESEERLNLATVAAGAGLWILDTNTGQFWV-------T 262 Query: 213 SHCACLPRCMPGESVLLTQTLQTRQPT---LTHRADDLFLWQRDPLLLLLASNGCESALL 269 L +PGE + + +T P L ++ L + + + Sbjct: 263 QMLRKLFNFLPGEELSFERYEKTIHPDDRKGVRELVQRSLKTQNDLTIEYRILKPDGNVC 322 Query: 270 IPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 + G +T + I +R + + L+ L++ Sbjct: 323 W-IMTRGRPYG-------GATGIPLRLMGICMDITERKEMENELRKQLAEINKLKLQLEK 374 Query: 330 ENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389 EN L ++ + G G II S + +L +V VA +D+TVLI GETG GK ++A AIH Sbjct: 375 ENIYLRNEIKTERGFGGIIGHSDTLRYVLFRVQQVAPTDATVLILGETGVGKGMVAHAIH 434 Query: 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIG 449 ++S R+DK +V +NCAA+P++L+ESELFG +KGAFTGA GRFE+ADGGT+FLDEIG Sbjct: 435 EMSARKDKTMVTVNCAALPSNLIESELFGREKGAFTGAYARQAGRFEVADGGTIFLDEIG 494 Query: 450 DLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLN 509 +LPLELQ KLLRVLQ+ E ERLG RT+ V+VRVIA+T+RDL + + +FR DL+YRLN Sbjct: 495 ELPLELQTKLLRVLQDGEFERLGSPRTVKVDVRVIASTSRDLKVEMHNGRFREDLYYRLN 554 Query: 510 VFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELEN 569 FP+ LPPLR R EDIP LA+HF K +R +N+ +++ + ++ L ++ WPGNVRELE+ Sbjct: 555 TFPVTLPPLRMRVEDIPELARHFIDKYSRKLNKQFESLSKDTMQMLQAYAWPGNVRELEH 614 Query: 570 VIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQ 629 VIER V+ + V Q P + D ++ + R+ I+Q Sbjct: 615 VIERGVITSPEPVFQ---LVEQLEQGPGMEADKPIKG------------FETMAREHILQ 659 Query: 630 VLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 VL +T + G GAA LG+ +TL R+++LGI Sbjct: 660 VLHKTGWKIEGKGGAAAILGLNPSTLRFRLKKLGIKRP 697 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 161/479 (33%), Positives = 241/479 (50%), Gaps = 25/479 (5%) Query: 188 ASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDL 247 +++ D KN L + + L + + D+ Sbjct: 3 EKAHILIIDDEKNYLLVL----QTLLEDEGYTVTAISDPETALAFLDESEVDVV--VTDM 56 Query: 248 FLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADR 306 + + +L + + + A+ L + + + D Sbjct: 57 KMPKVTGRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFS-----NDE 111 Query: 307 IAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAK 366 + +++ NA ++ L E + G+ I+ +S+A+ D+L V+ A Sbjct: 112 LLLSIHNAVEL-------ARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAP 164 Query: 367 SDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTG 426 S STVLI GE+GTGKE+IARAIH SPR+D P V +NC A+ +LESELFGH+KG+FTG Sbjct: 165 SRSTVLITGESGTGKELIARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTG 224 Query: 427 AINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAA 486 A+ RGRFE ADGGTLFLDEI +L +LQ KLLRVLQER ER+GG I V++RV+AA Sbjct: 225 AVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAA 284 Query: 487 TNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDA 546 TN+DL MVE FR DL+YRLNV + LPPLR+R EDIPLL HF K+ Sbjct: 285 TNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKT 344 Query: 547 IPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRS 606 TEAL L ++WPGN+R+LENV+E ++L G +N+ + R + + + Sbjct: 345 FSTEALNYLTGYEWPGNIRQLENVVESCLVLVPGTVINVDNLPAEIRDEESQFKSA---V 401 Query: 607 SMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + + ++ E I + L + + AA LG+ ++ L ++++ I+ Sbjct: 402 DLLPVQLDLADTLEKIEAALIRRALVRADLV---QVKAAEYLGISKSLLQYKLKKYAIT 457 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 258/500 (51%), Gaps = 29/500 (5%) Query: 170 LDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLL 229 + ++ + +++ D + SL L + + G L Sbjct: 2 PEIAVSRTSNSARELSAA--GVVLIIDDEAAIRESL--QTLLELEGYQVDTAVDGGDGL- 56 Query: 230 TQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTS 288 +Q D L R+ + +L ++ + + + A+ Sbjct: 57 ---MQMAAHPYDLVLLDFALPDRNGIEILKEIRSRDTEISVIMITAYGTVENAVNAMQAG 113 Query: 289 STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDII 348 +T F ++ + +AD + A+ + +++EN QL L +II Sbjct: 114 ATNFIQKPWDNEKLLAD-VGAAIA-----------RRRVEEENLQLKRALKQRYNFENII 161 Query: 349 YQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIP 408 +S+ M + V +A S STVL+ GE+GTGKE+IA+AIH S R+D+ V IN ++P Sbjct: 162 GKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAIHMNSTRKDRAFVPINTGSMP 221 Query: 409 ASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREI 468 LLES LFGH KGAFT AI + +G FE+ADGGTLFLDEIG + +E Q K+LRVLQ+R+ Sbjct: 222 TDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEIGTMSMETQAKILRVLQDRKF 281 Query: 469 ERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLL 528 LGG + I V+VR+IAATN DL Q+V++ +FR DLFYRLNV ++LPPLR R D+PLL Sbjct: 282 MHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRLNVITIDLPPLRQRRLDVPLL 341 Query: 529 AKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN 588 +HF +K + + + EALR L+ ++W GNVRELENVIERAV+L G S+ + L Sbjct: 342 CEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRELENVIERAVVLANGPSITIDLL 401 Query: 589 VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRL 648 + S+L + ++ ER+ IV +L + AA + Sbjct: 402 PDNV-----VGRGSSLSFVETRPDASLFEIMEDCERRIIVDMLEKVGW---NQTEAAEKF 453 Query: 649 GMKRTTLLSRMQRLGISVRE 668 + +TL +++RL I +++ Sbjct: 454 RIPLSTLNQKIKRLSIEIKK 473 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 146/475 (30%), Positives = 240/475 (50%), Gaps = 26/475 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D + L + G + + D+ + Sbjct: 6 IMVVDDDALGREYLC------ETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPG 59 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + L G S ++ L A+ + + + D+I + Sbjct: 60 MDGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFS-----PDQIELL 114 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + + ++ L EN + + ++ M + +Q+ +A+S ++ Sbjct: 115 ISRV-------NERQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKAS 167 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE++ARAIH SPR +KP +++NCAA+ SLLESELFGH++GA+TGA+ Sbjct: 168 VLIQGESGTGKELVARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAK 227 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+A+ GTL LDE+ ++ +Q KLLRVL+E E ER+GG +TI ++VR++A TNRD Sbjct: 228 RIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRD 287 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + ++ FR DLFYRLNV P+ LPPLR+R EDIPLLA + +K + N ++ +I Sbjct: 288 LAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKR 347 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L ++WPGNVREL+N+++RAV++ L L + + + + Sbjct: 348 AMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVN--- 404 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + ++ E++ I L +T G AA L + TL +++ + I+ Sbjct: 405 -IKKNGQSIEDAEKELIFTTLEKTGG---NKTKAAGLLKITTRTLRNKLNKYVIA 455 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 164/484 (33%), Positives = 257/484 (53%), Gaps = 35/484 (7%) Query: 185 FGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRA 244 + +++ D + + SL + + + + + Sbjct: 1 MPTETTRILVVDDEEIVRESL------GGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMI 54 Query: 245 DDLFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHI 303 DL + D L +L A+ + L + + A+ + + + Sbjct: 55 VDLKMPGMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFD----- 109 Query: 304 ADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDI 363 + ++I + + Q+SL +EN L + L D++ +S AM+ + + Sbjct: 110 PEELSIMMQKIVS-------QQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELART 162 Query: 364 VAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGA 423 A+S+ST+L+ GE+G+GKEV+ARA+H SPR P V ++CAA+ SLLESELFGH+KG+ Sbjct: 163 AARSNSTILVLGESGSGKEVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGS 222 Query: 424 FTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRV 483 FTGAI+ +G+FE A GGTLFLDE+GD+ +LQ LLRVL+ER R+GG+ I V+VR+ Sbjct: 223 FTGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRI 282 Query: 484 IAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA 543 IAATNRDL + + +FR DLFYRLNV P+ +PPLR+R EDIPLL ++F ++++ M R Sbjct: 283 IAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRR 342 Query: 544 IDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSA 603 I+ + +A+ LM+ DWPGNVREL NV+ER ++ G + L +RL Sbjct: 343 IEGVSPDAMGALMAHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPG-- 400 Query: 604 LRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 T +E E++ + VL NG V+ +A LG+ R TL ++M++ G Sbjct: 401 -----------TLASLEEVEKRHVAAVLAHANGNVS---QSARILGIDRVTLYNKMRKYG 446 Query: 664 ISVR 667 + Sbjct: 447 LRRD 450 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 150/482 (31%), Positives = 260/482 (53%), Gaps = 22/482 (4%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 + + S+++ D K ++ + + + Q + T QP L D Sbjct: 7 MHTNSILIVDDEKAARYGMKKILQRD----HGSIFEATNGIDVLQKIHTLQPALIFL--D 60 Query: 247 LFLWQRDPLLLLLASNGC-ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 + + Q D L L L++ +T A+ + + + ++ + Sbjct: 61 INMPQLDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEM-----E 115 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 + I NA + +LQ+EN +L ++ G G+++ QS+ M+++ +++ V Sbjct: 116 ELRIITRNAL-------EKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVV 168 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 +D TVL+ GE+G+GKE+ A IH+ S R++ P + +NCAA+P +L+ESELFGH++G+FT Sbjct: 169 TADVTVLLQGESGSGKELAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFT 228 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA G+FE+A+ GT+ LDEIGD+ L Q KLLRVLQE++ ERLGG+ T+ V+VR+I+ Sbjct: 229 GATERRMGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIIS 288 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 AT+RDL + +E+ +FR DL+YR+NV +++PPLR R EDIPLL F Q ++ + + Sbjct: 289 ATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVV 348 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 +I +A+++L +++WPGN+R+L+N IE A++LT + L++ + + Sbjct: 349 SISNDAMKKLSAYNWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKNV 408 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + E+ I + L E G ++ A L M R L +++ L ++ Sbjct: 409 HYHLSFREAKKILIENFEKDFISKKLEECGGNIS---HTAEALDMHRQNLQQKIKDLQLN 465 Query: 666 VR 667 Sbjct: 466 KD 467 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 157/482 (32%), Positives = 242/482 (50%), Gaps = 25/482 (5%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 ++ + + D + + L S + G+ +LL + Q L D Sbjct: 6 MSETRIFICDDEEGIL--KYMKKLLESQGLVVETFTSGK-MLLARLQQGPNADLL--LQD 60 Query: 247 LFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 + + D L +L L + + A+ + + + + Sbjct: 61 VKMPDMDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFP-----KE 115 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 +I + N +E L++EN QL E+L I++ S ++ + VA Sbjct: 116 KILGVLENVL-------ERELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVA 168 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 S++ +LI GE+GTGKE+IA AIH+ S RR + ++ INCAA+ +LLES+LFGH +GAFT Sbjct: 169 ASEANILILGESGTGKELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFT 228 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA +G E AD GTLF+DEIGD+ L LQ KLLRV+QE + +G +R V++R +A Sbjct: 229 GATTNQKGLLEEADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVA 288 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATN++L + V + +FR DL+YRLNV + LPPLR+R EDI LA+HF +K + MN+ +D Sbjct: 289 ATNKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVD 348 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 EAL ++ + WPGN+RELENV+ERAV+L R + + + + Sbjct: 349 RFTREALDLMLGYSWPGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPAS 408 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + + L + ER+ I Q L T A LG+ R TL ++ G+ Sbjct: 409 ALSSHQL----VSLENVEREHIRQTLARTGFH---KSRTAEILGISRKTLDRKIAEFGLK 461 Query: 666 VR 667 Sbjct: 462 PE 463 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 184/625 (29%), Positives = 279/625 (44%), Gaps = 46/625 (7%) Query: 57 HVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSS-GMAELRFIRTHGSRFTSQ 115 H + T GE++ R + + RF+ Sbjct: 50 HAEVFAAEGGWFVRDLGSLNGTHLNGELLRSDR-PLRPQDELRLGRTRFVFVDEMSQLPD 108 Query: 116 DCTLFNWLARIITPV-----LQSWLNDEEQQVALRLLE-------KDRDHHRVLVDITNA 163 + A + + L ++ VL + Sbjct: 109 PPQVAPAPAEHVDGLEIRKRLGQTRYQQQPSTTPDAEATLPAARVPPPQAVGVLYRLALD 168 Query: 164 VLSHLDLDDLIADVAREIHHFFGLASVSMV-LGDHRKNEKFSLWCSDLSASHCACLPRCM 222 + + D L A + V+++ L + R+ E + + + + + + Sbjct: 169 MAAAADKPALCVLAADAVFRATPAEVVAVLALKEGRELELVTHRVRNGGPATYHKVSQFV 228 Query: 223 PGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGAL 282 E L RQ L + + +A S + P+ + G L Sbjct: 229 SSE------VLSDRQAILAENVATDRMLKDRDS---IAELKVASLICAPIMADDKVLGLL 279 Query: 283 LLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSN 341 L T + ++ + +A + Q SL EN L QL Sbjct: 280 HLYRTIGHAPLNADDLEFTLAVARHLGTVWHRF-------SRQASLSAENRSLRSQLKIE 332 Query: 342 LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 +I+ +S ++ + QV VA++ +TVL+ GE+G+GKE++ARAIH SPRR+ + Sbjct: 333 ---SEIVGESAVLQQIESQVVRVAETRATVLVRGESGSGKELVARAIHLHSPRREGAFIC 389 Query: 402 INCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 +NCAA+ +LLESELFGH+KGAFTGA G+FE AD GT+FLDEIG++ L Q K LR Sbjct: 390 LNCAALTETLLESELFGHEKGAFTGATERMVGKFEAADNGTIFLDEIGEMALSTQAKFLR 449 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 VL+ ER+GG+ I V+VRV+AATNR L + V FR DLFYRL V L++PPLRDR Sbjct: 450 VLEGHPFERVGGNTAIKVDVRVVAATNRPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDR 509 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 +D+PLLA+HF ++ AR R EAL +L ++ WPGNVREL NVIERAV L G Sbjct: 510 LDDVPLLAEHFLKRFARETARKFKGFTPEALDKLRAYRWPGNVRELRNVIERAVALGNGP 569 Query: 582 SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGP 641 L+ + +AL +E E++ I++ L+ T+ Sbjct: 570 QLDAADIWLSGLDVGAPVVSAALVYKP--------ETIEEVEKRHILETLKHTDW---NK 618 Query: 642 RGAATRLGMKRTTLLSRMQRLGISV 666 AAT LG++R+TL ++ R G++ Sbjct: 619 SRAATILGIERSTLDRKIDRYGLTK 643 >UniRef50_B8IZ98 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfovibrio RepID=B8IZ98_DESDA Length = 554 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 169/444 (38%), Positives = 249/444 (56%), Gaps = 4/444 (0%) Query: 221 CMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPG 280 P + T +P + W P +A+ G S PL T G Sbjct: 95 RFPLGHRKVGAIAMTNRPLEVSHIEGNEDWIAAP--EWIAAEGIVSFAGQPLVCRGETLG 152 Query: 281 ALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS 340 + ++ ++L+ +AD IA A+ NA + + + + EN L E+L Sbjct: 153 VIAFFSR--DTLAQGAMEMLRMVADHIAYAITNARLFEITRSITQRRELENAHLREELYE 210 Query: 341 NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLV 400 II +S A++ + +Q+ +V+++++TVLI G +GTGKE++A +H+ S R++ P + Sbjct: 211 ARQFTGIIGKSAAIKAIREQILVVSETEATVLIQGASGTGKELVAHELHKNSKRKNNPFI 270 Query: 401 KINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLL 460 KINCAAIP L ESE FGH KGAFTGAI+ G F++ADGGTLFLDEI ++PLELQ KLL Sbjct: 271 KINCAAIPHHLFESEFFGHVKGAFTGAIHDRMGFFQLADGGTLFLDEIAEIPLELQGKLL 330 Query: 461 RVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRD 520 RVLQE E R+G + ++R+IAATN+DL + R FR DL+YRL VFPL +P L++ Sbjct: 331 RVLQEGEFRRVGEEKNRHTDIRLIAATNKDLKAAIRKRTFRDDLYYRLQVFPLTVPTLKE 390 Query: 521 RPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRG 580 R EDIPLL +HF + R R + +P + +L +DWPGN+REL+N +ER V+ R Sbjct: 391 REEDIPLLVRHFIRIFCRKNGRRVFDVPEAQMNRLRQYDWPGNIRELQNFVERMVITGRP 450 Query: 581 NSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAG 640 +L + ++ L +S T + + E+ + L TN ++ G Sbjct: 451 EQALAYLALCEAASPEAEEAAPELCASFGIPKILTEKQMRQLEKDNMKAALERTNWLIYG 510 Query: 641 PRGAATRLGMKRTTLLSRMQRLGI 664 RGAA LGMK TTL+SR++R + Sbjct: 511 NRGAAALLGMKPTTLISRLKRFDL 534 >UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUG3_SYNAS Length = 535 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 156/370 (42%), Positives = 238/370 (64%), Gaps = 7/370 (1%) Query: 298 QLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDL 357 + + + ++ + A A+ + L++ L+ EN L +++ G G+II S ++ Sbjct: 170 SMARDVTEQHRLEAELAKAFDEIKRLKDQLEAENIYLRDEIKLKEGFGEIIGASDVIKST 229 Query: 358 LQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELF 417 + ++ VA S +TVL GETGTGK + AR +H+ S RRD+P V +NCA++PA+L+ESELF Sbjct: 230 IHKIRQVAPSKTTVLFAGETGTGKGIFARFLHRESDRRDRPFVNVNCASLPANLIESELF 289 Query: 418 GHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTI 477 G +KGA+TG+ GRFE+A+ GT+FLDEIG++P+ELQ KLL+V++E E ER+G I Sbjct: 290 GREKGAYTGSTARQIGRFELANNGTIFLDEIGEVPMELQAKLLKVIEEGEFERIGSPHPI 349 Query: 478 PVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMA 537 V+VR+IAATNRDL + ++ +FR DL++RLN+FP+ +PPLRDR DIPLL K F K + Sbjct: 350 KVDVRIIAATNRDLQEEIKKGRFRQDLYFRLNIFPINIPPLRDRKGDIPLLVKAFVAKFS 409 Query: 538 RHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPT 597 + NR I IP + + L ++ WPGNVREL NV+ERAV+++ G+ L L + L + Sbjct: 410 KSHNRDIKRIPAKIMESLKNYAWPGNVRELINVMERAVIVSEGSELQLAEKIDAIPLDSS 469 Query: 598 LNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS 657 + D + + + ER+ I++ L++T + GPRGAA L ++ TL + Sbjct: 470 IRGDESFSTGS-------GETLADAEREHILKALQQTGWRIEGPRGAAQILDLQPNTLRA 522 Query: 658 RMQRLGISVR 667 RM++LGI Sbjct: 523 RMKKLGIKRP 532 >UniRef50_Q01S08 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01S08_SOLUE Length = 509 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 165/518 (31%), Positives = 254/518 (49%), Gaps = 18/518 (3%) Query: 149 KDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 + + ++ I+ + S DL +L+ +ARE S+ L D NE +S Sbjct: 8 ELNERLAAILAISQKMNSQRDLSELLDLIAREATSLLDCDRASIFLLDRDTNELWSKVAL 67 Query: 209 DLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESAL 268 R + +T A + + + L Sbjct: 68 GSDEILRFEASR------GIAGNAARTGDTINVRDAYSDPRF--YTGIDGKTGYRTRNLL 119 Query: 269 LIPLT-FGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 + + GA + +F+ + + L +A A+A+ A + Q+ L Sbjct: 120 AVAVRNQRGEIIGAFEALNKRVGVFTARDEESLAALASHAAVAIETAQLIGELRRNQDEL 179 Query: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 Q+N L ++ S I+ Q ++ +++ V+ + S VLI GETGTGKE+ A+A Sbjct: 180 AQQNAHLWREVESRYATHGIVGSGQRIQQVVRLVERIRDSVVNVLITGETGTGKELAAKA 239 Query: 388 IHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDE 447 IH SPR KP V +NCAA+P +LLESELFG +KG TG +N+ G+F+ ADGGTLFLDE Sbjct: 240 IHYNSPRVRKPFVALNCAALPETLLESELFGIEKGVATG-VNSRVGQFQKADGGTLFLDE 298 Query: 448 IGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507 IGDL L Q K+LRVLQER +ER+GG I V+VR++AATN+DL + FR DL+YR Sbjct: 299 IGDLSLTAQAKILRVLQERVLERVGGRAPIAVDVRLLAATNKDLEAEIAKGNFREDLYYR 358 Query: 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVREL 567 + V + +PPLR+ E+IPLLA+HF ++ R R + +R+L++ WPGNVR+L Sbjct: 359 IKVIHIHMPPLREIREEIPLLARHFLKEYCRETGREAMEFAPDVMRKLVNSPWPGNVRQL 418 Query: 568 ENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRI 627 N + R R + + L+ + ++ L E E + I Sbjct: 419 RNEVTRLAACARLSLIEEEDLWEGIPLVARH-----VPTAEPVKLQSLKKAVAEMEGRMI 473 Query: 628 VQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + L+ET + AA LG+ R L+++M+R I+ Sbjct: 474 AEALQETRN---NQQQAAKLLGLSRQGLINKMKRYAIA 508 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 194/537 (36%), Positives = 275/537 (51%), Gaps = 43/537 (8%) Query: 143 ALRLLEKDRDHH--RVLVDITNAVLSHLDLDDLIADVAREIHH-FFGLASVSMVLGDHRK 199 R LE + L + A D++ + R + +G+ + + Sbjct: 184 HRRDLEARAEAFMHEGLAEWQRADRLFADIERENRLILRAVGEGIYGVNAEGRTTFVNPA 243 Query: 200 NEKFSLWCSDLSASHC--------ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 E+ W ++ P + + + H ++ W Sbjct: 244 AEQILGWTAEEMIGRDMHAMVHHHHHDGSAYPNTTCPIYAAFRDGA---VHHVENEVFWH 300 Query: 252 RDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV 311 R + + PL GA+++ + + + Sbjct: 301 RSGRPVWVEYTST------PLRDRGRLIGAVVV---------------FRDVTQKREANE 339 Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 A + L+E L+ EN L E++ + II +S+A++ +L+QVD+VA +D+TV Sbjct: 340 QLRAALAEVDRLRERLEMENAYLQEEIRAETSHRGIIGRSEAIKKVLRQVDLVAPTDATV 399 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 LI GE+GTGKE+IARAIH S RR++PL+++NCAAIP L ESE FGH +GAFTGA+ Sbjct: 400 LITGESGTGKELIARAIHDASERRERPLIRVNCAAIPRELFESEFFGHVRGAFTGALRDR 459 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 GRFE+AD GTLFLDE+G++PLELQ KLLRVLQE + ER+G RT V+VR+IAATNRDL Sbjct: 460 VGRFELADRGTLFLDEVGEIPLELQSKLLRVLQEGQFERIGEERTRQVDVRIIAATNRDL 519 Query: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 V +FR DLFYRL+V P+E PLR+R EDIPLLA HF + R + Sbjct: 520 KAAVRAGRFREDLFYRLDVMPIESVPLRERREDIPLLAAHFLDGVRRKPADGPLQLSAGD 579 Query: 552 LRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQL 611 +R+L ++DWPGNVREL+NVIER ++L R L++ L R++ SA + A Sbjct: 580 MRRLQTYDWPGNVRELQNVIERGIILARNGRLHIDLPDREAPATAQPVPPSAELETEADR 639 Query: 612 LHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 R I+ L G V+GP GAA RLG+K TTL SRM+ LGI+ Sbjct: 640 RLRL--------RTSILAALEAAGGKVSGPGGAAERLGLKPTTLASRMKTLGITPGR 688 >UniRef50_A3ZU96 Probable two-component response regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZU96_9PLAN Length = 651 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 175/555 (31%), Positives = 266/555 (47%), Gaps = 35/555 (6%) Query: 111 RFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDL 170 R T + + A + +L + Q+VA L+ I + D+ Sbjct: 120 RSTPELIKTLQYRAALTAHLLGYGVGLIRQRVARSA---RLKRLEQLLTIIESWQKTRDM 176 Query: 171 DDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLT 230 L+ ++A FG S+ L D K + +P + ++ Sbjct: 177 HTLLTEMAEAAAELFGSERASIFLWDRPKKTLVGRPALGIEGGELR-----VPDDRGVVG 231 Query: 231 QTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSS 289 +QT +P D + + + + + L +PL GA L + Sbjct: 232 HVVQTGEPRRVDELDKDEINRD---IDQSLAFHTRNLLCVPLVGRRGRIFGAFELINKQL 288 Query: 290 TLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIY 349 F+ E+ L +A + A+ N + + L + ++I Sbjct: 289 GNFTAEDQLGLTELAAHASSALENTQETERILASRNRLA----------DAAAAAAELIG 338 Query: 350 QSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPA 409 A+ L + VA+S+ VL+ GE GTGKEV++++IH S RR +PLV +NCAA+P Sbjct: 339 DCPAIATLRGTIRRVAESNLPVLVLGENGTGKEVVSQSIHFRSDRRAQPLVAVNCAAVPD 398 Query: 410 SLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIE 469 +LLESELFG +KGAFTGA T G+FE+ADGGTLFLDEIGDL L Q KLLRVL+++ I Sbjct: 399 TLLESELFGREKGAFTGADETRPGKFEMADGGTLFLDEIGDLSLSGQSKLLRVLEDQLIM 458 Query: 470 RLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLA 529 R+GG+ I V+VR+IAATNRDL ++V +++FR DLF+RL+V +ELPPLR+R DI LA Sbjct: 459 RVGGTSEIQVDVRIIAATNRDLGELVREKKFREDLFFRLHVVTIELPPLRERGTDILTLA 518 Query: 530 KHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNV 589 HF + R + A R+L++ WPGNVREL N +ER + L + Sbjct: 519 NHFLHHFSLKTGRQTPTLSEAAQRRLLAHAWPGNVRELRNTMERVIFLHSDEVIQPESLQ 578 Query: 590 RQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLG 649 S A + P E +R+ I + + G ++ AA ++G Sbjct: 579 FH----------SLDSHDDAPMNLPLNDATAEFQRRYIQRHVDAAQGNIS---AAAEKIG 625 Query: 650 MKRTTLLSRMQRLGI 664 M R+ L +M++L + Sbjct: 626 MHRSNLYRKMKQLEM 640 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 160/490 (32%), Positives = 251/490 (51%), Gaps = 32/490 (6%) Query: 191 SMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLW 250 S+++ D + S+ + + + + G S + + DL + Sbjct: 4 SVLIIDDEPLMRLSMLDALKAEGY------HVQGASNGEDGIQKIKTSRYDLVITDLRMP 57 Query: 251 QRDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAI 309 D L ++ S +I +T A+ + + + + D + + Sbjct: 58 GSDGLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPM-----DELLM 112 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 V A ++L+QEN L ++L ++ +++ M +L++V +VA +D+ Sbjct: 113 TVDRATKV-------QALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDA 165 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKEVIA AIH+ SPR + L+K++CAA+P +LLE+ELFGH++GAFTGA+ Sbjct: 166 TVLIFGESGTGKEVIANAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALK 225 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 GRFE+A GTLFLDEIG++ +Q KLLRVLQE+ ER+GG+ TI +VR++ AT + Sbjct: 226 QRLGRFELAHKGTLFLDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQK 285 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 +L + VE +FR DLFYRLNV + LPPLR+R EDI +LA+H Q+ + R + Sbjct: 286 NLKEEVEAGRFREDLFYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSV 345 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLT-RGNSLNLHLNVRQSRLLPTLNE-------- 600 A L+ + +PGNVRELEN IERAV L G+ + Q+ Sbjct: 346 AARDVLLHYSFPGNVRELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFC 405 Query: 601 -DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659 + + A+ + ER+ I+ VL A+ LG+ R L + Sbjct: 406 QEGVSNVTNARQTGTLAEVRERCEREYILAVLEREGW---SRTAASKSLGLSRKALWEKC 462 Query: 660 QRLGISVREV 669 +R G++ + Sbjct: 463 KRYGLATPDT 472 >UniRef50_B8GQ33 NifA subfamily transcriptional regulator n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GQ33_THISH Length = 547 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 173/538 (32%), Positives = 260/538 (48%), Gaps = 30/538 (5%) Query: 151 RDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDL 210 + V+ +I + LD + + R + GL ++ D + L Sbjct: 13 KQQLSVIQEIAKLLDRPLDPPRTVQSILRLLSQMLGLNCGRVLAPDSSGLVLEVKYSYGL 72 Query: 211 SASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLI 270 + + A + + ++T L D L+ + S+ + + + Sbjct: 73 THARLAQGAFSVGYHEGVTGFVMRTGTIGLVTDIDQEPLYLQRITERSGGSHSPIAFIAV 132 Query: 271 PLTFGNHTPGALLLAHTS-STLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQ 329 P+ G L + + + +L+ A I + + + E L Q Sbjct: 133 PILESGTPIGVLSVQREGIRHRAFDSDIAVLRVAASAIGQVM---RIRQFLNQQTEHLMQ 189 Query: 330 ENHQLS-----EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 EN L E +L II S+++ ++Q VA S++ V++ GE+GTGKE Sbjct: 190 ENQSLKNSIVMEGMLQKSLSHGIIGSSESLMKAVKQCMQVAHSEAPVMLLGESGTGKEKF 249 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 AR IHQ S R + P V INCAAIP LLE+ELFG++KG+FTGA +G+ +ADGGTLF Sbjct: 250 ARMIHQQSDRSEHPFVCINCAAIPPDLLEAELFGYEKGSFTGANGAKKGKIMLADGGTLF 309 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGD+PL+LQ KLLRVLQER+++ +G +R +PVN R+I AT+ ++ + V FR DL Sbjct: 310 LDEIGDMPLQLQAKLLRVLQERQVDPIGSTRGVPVNFRLITATHVNMQEHVNAGHFRLDL 369 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 FYRLNV P+ LPPLR R EDI LA HF ++ R I + AL L + WPGNV Sbjct: 370 FYRLNVVPVYLPPLRTRHEDIRPLALHFLNELNHRYRRNI-TLHPAALHVLERYSWPGNV 428 Query: 565 RELENVIERAVLLTRGNSLNLHLNVR-----QSRLLPTLNEDSALRSSMAQLLHPTTPE- 618 R+L+NV+ERA+L+ ++ R + LP D + + MA+ Sbjct: 429 RQLQNVLERAMLMVEDEVIDQEQMTRILAEQSAVKLPKQGPDRPVEAGMAEERGVRGEAF 488 Query: 619 -----------NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 +++ QRI L +T G GAA L + L RM++LG+ Sbjct: 489 LTGAMPRAYQWVHQDDAQRIRNALEQTRG---NQAGAARLLNLTTRQLRYRMEKLGLR 543 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 150/480 (31%), Positives = 237/480 (49%), Gaps = 24/480 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D + L + + L+ + D+ + Sbjct: 4 ILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLI------KDTPFDMVITDMKMPD 57 Query: 252 RDPLLLLLASNGCES-ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 + +L +++ +T A+ + + + Sbjct: 58 LTGIDILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFS------------ 105 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGD--IIYQSQAMEDLLQQVDIVAKSD 368 +A SL QEN L +Q+ + II +S M+ +L+ V VA+S+ Sbjct: 106 PDTIEAIIEKAKEHLSLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSN 165 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 ++V I GE+GTGKEVIA+AIH S R P +K+NCAAIP +L+ESE FGH+KGAFTGA Sbjct: 166 ASVFINGESGTGKEVIAQAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGAN 225 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 GRFE+A GTL LDEI ++PL +Q KLLR +QE+E ER+GGS+ I V+VR+I+ +N Sbjct: 226 FKRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSN 285 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 RD+ + + R DL+YRLNV P+ LPPLRDRPEDI LA +F +KM ++ Sbjct: 286 RDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFS 345 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 E++++L+ + WPGNVREL N++ERAV++T + + ++ ++ S Sbjct: 346 KESIKKLVGYAWPGNVRELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQN 405 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 P E E++ I++ L+ + A LG+ TL +++ + Sbjct: 406 TLTSLPVGMTLQELEKRLIIETLQAQHN---NRTKTAEVLGISVRTLRNKLNEYNMKNER 462 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 172/480 (35%), Positives = 248/480 (51%), Gaps = 31/480 (6%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 V +++ D + + L + G + + PTL DL + Sbjct: 9 VRVLIVDDDVSLRRVLEYNLQEEG----YEVLTAGSGEEGLRLFEDGAPTLV--VTDLKM 62 Query: 250 WQRDPLLLLLASNGC-ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 LL ++I +T A+ + F + + + Sbjct: 63 PGMGGFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNR-----EALK 117 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 + V A + L +EN +L E+L II S ME++ + +D VA +D Sbjct: 118 LTVRKALDM-------QGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTD 170 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 +TVLI GE+GTGKE++ARAIH S RR P V INCAAIP LLESELFGH KGAFTGA+ Sbjct: 171 ATVLITGESGTGKELVARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAV 230 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 G+F A+ GTLFLDE+G+LP+ELQ KLLR LQE+E++ +GG+ TI ++VRV+AATN Sbjct: 231 QDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATN 290 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 DL + + + +FR DLFYRL+V P+ LPPLR+R EDIPLL +HF A A Sbjct: 291 ADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFS 346 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 E L + ++ WPGNVRELEN +ER +++ ++++ + R S R Sbjct: 347 PEILAVMAAYGWPGNVRELENTVERILIMRNADTIHPDDLPEKVR-----RGRSPQRECR 401 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 L ++ ER+ +V+ L N + AA L + R TL+ RM++ I+ E Sbjct: 402 VINLPDEGYSLEQLEREIVVEALERNNWNQSS---AARFLRIPRHTLIYRMEKYSITTPE 458 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 162/470 (34%), Positives = 247/470 (52%), Gaps = 24/470 (5%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 + S +++ D K + + + + + ++ + D Sbjct: 1 MDSARILIADDDKKTRDFVAAFLSYKGYQV----FQASDGQDALEKIELNDVHMV--ITD 54 Query: 247 LFLWQRDPLLLLLASNGCESALLIPLTFGNHTPG-ALLLAHTSSTLFSEENCQLLQHIAD 305 + + + + L + ++ L + + E+ L + Sbjct: 55 IMMPRVNGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNL-----E 109 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 + V ++LQ+++ + + + + +II +S M L + ++ VA Sbjct: 110 ELETHVKRGLEH-------QALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVA 162 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 SDSTVLI GE+GTGKE++ARAIH LS R K V +NCAAIP LLESELFGH KG+FT Sbjct: 163 GSDSTVLIQGESGTGKELVARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFT 222 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA+ T GRFE+AD GTLFLDEIGD+ LQ KLLRVLQ +E+E +G +RT V+VR+IA Sbjct: 223 GAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIA 282 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATN++L +V + FR DL+YRL+V P+ LPPLR+R DIPLL +F +K R+ R + Sbjct: 283 ATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQ 342 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 + + L ++DWPGNVRELEN++ER V+L ++ + R + + + R Sbjct: 343 SFDKNTMDILCNFDWPGNVRELENLVERLVILKGSGTITFQDLPEKYRGIKS--APKSER 400 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTL 655 ++ ++ E Q I+Q L +T G + AAT L +KRTTL Sbjct: 401 LTLPDTGFCLNSAVEDFENQLILQALEKTGG---NKKEAATLLNLKRTTL 447 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 156/476 (32%), Positives = 232/476 (48%), Gaps = 35/476 (7%) Query: 191 SMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLW 250 +++ D + + + + + + ++ D+ + Sbjct: 6 TILFTDDEGTFRNIM------SKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMP 59 Query: 251 QRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAI 309 + + L E + + G A+ + + + CQL + + Sbjct: 60 VMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQL-----KELDL 114 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 + A + L +EN L + +I S A++ + + +D A SD Sbjct: 115 LLQRAL-------EKRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDV 167 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKE+ A+ IHQ S R DKP V +NCA + SLLESELFGH KGAFTGA Sbjct: 168 TVLIQGESGTGKELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAE 227 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 + G FEIA+GGTLFLDEIG+L + Q KLLRV+Q EI R+G +R I V+ R+IAAT++ Sbjct: 228 SRVGLFEIAEGGTLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHK 287 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 +L V++ +FR DL++RLNV L LP LR+R +D+ L +HF QK + + Sbjct: 288 NLPLEVKEGRFREDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHP 345 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 EAL + +DWPGN+RELEN IER V+L GN +++ R + Sbjct: 346 EALHAMTLYDWPGNIRELENTIERTVVLADGNIISIEELPDNIRGR-----------TYE 394 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 E E+ I+QVL+E N AA LG+ TL ++M+ I Sbjct: 395 HYGKNGEIALSEVEKNHIIQVLKEKNWH---KPLAAKTLGISLKTLYNKMKMYNID 447 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 165/500 (33%), Positives = 244/500 (48%), Gaps = 39/500 (7%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 + +++ D ++ ++ L A + + +Q L D Sbjct: 1 MTLTRILVADDEESMRWVL----SKALKRKGFTVDLADDGRQALALIQENSYDLA--ILD 54 Query: 247 LFLWQRDPLLLLLASNGCES-ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 + + L LL +S L++ +T A+ + + + L D Sbjct: 55 IKMPGMSGLDLLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDL-----D 109 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG-DIIYQSQAMEDLLQQVDIV 364 I V R + + L ++L + + +II S AM+ + + + V Sbjct: 110 VIDAIVEKVGRAREI-------AGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKV 162 Query: 365 AKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAF 424 A SD T+LI GE+GTGKE++ARAIH S R KP V INCAAIP LLESELFG ++GAF Sbjct: 163 ADSDITILIQGESGTGKEMVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAF 222 Query: 425 TGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484 TGA +G+FE A+ GT+FLDEIGD+PL+LQ K+LRVLQE E+ R+GG+++I VNVR++ Sbjct: 223 TGASERKQGKFEQANQGTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIV 282 Query: 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI 544 AATN++L + V R+FR DL+YRLNV P+ L PLR+R +DIP L ++F + ++ Sbjct: 283 AATNQELQERVRQREFREDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPP 342 Query: 545 DAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL 604 + EA+ L WPGNVRELEN I+RAV+L+ L Sbjct: 343 KQLTPEAMALLSRHSWPGNVRELENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQD 402 Query: 605 RSSMAQLLHPTT----------------PENDEEERQRIVQVLRETNGIVAGPRGAATRL 648 S A + + ER I +L +T AA L Sbjct: 403 ASLEAIVEAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRW---NQVKAADIL 459 Query: 649 GMKRTTLLSRMQRLGISVRE 668 G+ R TL ++ L I ++ Sbjct: 460 GINRNTLRKKIHDLEIELKR 479 >UniRef50_C1ZGY0 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGY0_PLALI Length = 675 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 172/623 (27%), Positives = 272/623 (43%), Gaps = 36/623 (5%) Query: 67 YHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHG--SRFTSQDCTLFNWLA 124 + T+ +GE + S + F R+ D Sbjct: 65 WRLRDCGSRNGTKLRGERISGDVELKFGQSFQIGSTIFGLAGSLTQRWDDDDG----LDE 120 Query: 125 RIITPVLQSWLNDEEQQVALRLLEKDRD-----------------HHRVLVDITNAVLSH 167 I + + + E +L + R L + + S Sbjct: 121 PIESDTVDALRERHESDSNPEILHRRRQSRFRQPVDAAARDKTSLELSRLYRLALEMGSA 180 Query: 168 LDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE-KFSLWCSDLSASHCACLPRCMPGES 226 L V + + +++L + + A P Sbjct: 181 TTAQGLSEIVLEGLLNASSATIGAILLMSSSLAKNSGGNDQLSVVAYRAQNHQPYHPVSD 240 Query: 227 VLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAH 286 L L+ ++ L + L + + +S + P+ G + L Sbjct: 241 SLSQIVLKDQEAVLARDISSDDRFLDRDSLGEIEA---QSVICAPVRTAEKVYGLIHLYS 297 Query: 287 TSSTLFSE-ENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG 345 T + E ++ + +AD++A + + + + EN L EQL S + Sbjct: 298 TDNVSQLEVDDLEFTLAVADQMAAGLEQLQRVEKLQAGLQRAEVENQTLREQLRSEM--- 354 Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 D+I +S AM+ L ++ +A +D+T LI GE+G+GKE+IARAIH S RR P + +NCA Sbjct: 355 DLIGESPAMQQLKNRIARIAPTDATALIRGESGSGKELIARAIHLHSNRRGGPFITMNCA 414 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 A+ SLLESELFGH+KG+FTGA+ G+FE A GT+FLDE+G++ +Q K LRVL+ Sbjct: 415 ALSESLLESELFGHEKGSFTGAVGRKLGKFEQAHQGTIFLDEVGEMSPGVQAKFLRVLEG 474 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 ER+GG + +VRV+AATNRDL + V + FR DL++RL V L + PLR R DI Sbjct: 475 HPFERVGGGDPVHADVRVVAATNRDLEKAVSEGTFRQDLYFRLQVVELVVEPLRRRKLDI 534 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 PLLA +F + AR M R + A++ L+ +DWPGNVREL++ IERAV+L ++ Sbjct: 535 PLLANYFLNRFARKMARNMVGFTPGAMQALIEYDWPGNVRELQHTIERAVILCPHEAVGQ 594 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 L T + ++ + E+Q I+ L T AA Sbjct: 595 ADL--HLSALGTTGKSVEPTRDISTRQTFEALPLEIVEQQHILATLEWTGW---NKSQAA 649 Query: 646 TRLGMKRTTLLSRMQRLGISVRE 668 LG++R+TL +++R + Sbjct: 650 QILGIERSTLDRKLKRYDVERPR 672 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 155/403 (38%), Positives = 230/403 (57%), Gaps = 23/403 (5%) Query: 269 LIPLTFGNHTP-GALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESL 327 IP+ G G L ++ + R+ + ++ + + L + L Sbjct: 124 CIPILDGGGVLQGVLSISK---------------DVTKRVYKEIQYQESQKMLKALFQEL 168 Query: 328 QQEN---HQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 + +N L L +I +S M+++ ++ V+++DSTVLI GETGTGKE++ Sbjct: 169 EVKNTTIRSLQTSLRERYSFHSLIGKSYLMQNIYDLIEKVSQTDSTVLITGETGTGKELV 228 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 ARAIH S R+D LV +NCAA+P +LLESELFGH KG+FTGAI +G+FE+AD GT+F Sbjct: 229 ARAIHYNSHRKDYNLVAVNCAALPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIF 288 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIG+L + Q KLLRVLQER IER+G +TI V++R+IAATN+D+ +++E FR DL Sbjct: 289 LDEIGELSIPTQVKLLRVLQERYIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDL 348 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564 FYRLN+ + LP L++R +DIPLL HF +K + I+ I ALR+L+++ WPGN+ Sbjct: 349 FYRLNIISIRLPSLKERTDDIPLLVNHFIEKFNIRFKKNINGISPNALRKLLAYSWPGNI 408 Query: 565 RELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA-QLLHPTTPENDEEE 623 RELE VIE+AVLL ++ L L + D E Sbjct: 409 RELEGVIEKAVLLEESETIENIELPTDHSATTNLCLPKPLNAGPDISSYEDLQKRLDMLE 468 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 R+ V V ++ +G + A G+ R T+L++M++ + Sbjct: 469 REYFVSVFQKHHGRIGSI---AACTGLNRRTILNKMKKFSLKK 508 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 156/492 (31%), Positives = 239/492 (48%), Gaps = 23/492 (4%) Query: 175 ADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQ 234 + + + ++ D + + ++ + R E +T+ Sbjct: 262 EQIIETLESLTNNRTSGVLFYDL-LFCRGCIDGPEIDSELTYIERRQYLLELSKGNKTIL 320 Query: 235 TRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSE 294 +++P T R ++ PL + T L E Sbjct: 321 SKKPAGTFRVRYTVKARKLPLPTEEEIREILAY-----TDKFTPEDELNCGACGYNSCRE 375 Query: 295 ENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAM 354 + + Q +A+ + + + + ++ + + I Q++ + Sbjct: 376 KAIAVYQGLAEI------DMCLPFLLKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEKI 429 Query: 355 EDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLES 414 ++ + ++ A SD VLI GE+G GKE+ AR IH LS R DKP V INCAAIP +LLES Sbjct: 430 IEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLES 489 Query: 415 ELFGHDKGAFTGAINT-HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 ELFG+++GAFTGA G+ E ADGGTLFLDEIGD+PL +Q KLLR +Q RE ER+G Sbjct: 490 ELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGS 549 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 + V++R+IAATN+ L ++V++ +FR DL+YRLNVF + +PPLR+R +DIPLL F Sbjct: 550 NTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFM 609 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 + A + +EA+ LM++ WPGN+REL+NVIERA L GN + Q Sbjct: 610 NEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGNLIKPEHLPAQL- 668 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 AL + E E++ I++ L+ TN A LG+ R Sbjct: 669 ------TSKALSGERITKITTFKEAVAEVEKKLIIEGLKATN---YNKLACAKLLGIPRA 719 Query: 654 TLLSRMQRLGIS 665 TL +++ GI Sbjct: 720 TLYQKIKEYGIE 731 >UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZC1_DESOH Length = 926 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 189/585 (32%), Positives = 278/585 (47%), Gaps = 42/585 (7%) Query: 91 AVLLGSSGMAELRFIRTHGSRFTSQDC-----TLFNWLARIITPVLQSWLNDEEQQVALR 145 V L + +R ++ P L EE Sbjct: 377 PVQLAKTRFTLMRIHLKRDDPAEARRQARKAWKELAGYGETFFPDDLRHLLAEEPAREPT 436 Query: 146 LLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSL 205 K+ R + DI + ++ D L + + + +FG ++ + +L Sbjct: 437 PEVKEEFLLRFI-DIISELMPGPAPDRLFTRLVQATNRYFGAERGALFWFSDTPKQTPAL 495 Query: 206 WCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCE 265 + + L+ + + L R D R+ + Sbjct: 496 RAACNL-TETEIFSNAFRSNLALVFDAWREGRSILVRRGDRSDDPYRE-----------K 543 Query: 266 SALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNA-DAWRSMTDL 323 + L +P G L + + F+ + L + + + +A D R L Sbjct: 544 AILCLPFQIEGKPRGVLYHDNAYVTDCFNFLDPAQLNRLVHTLGSYIEHAWDLSRGFEKL 603 Query: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 + L + G +I+ +S ++ +L QVD VA +DSTVLI GETG GKE+ Sbjct: 604 RPPLAV--------PSTVTGTVEIVGESSRIKAVLTQVDQVAPTDSTVLILGETGVGKEL 655 Query: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443 +AR IHQ S R D PL+ ++ AIP L+ESELFGH+KGAFTGA +G E+A GTL Sbjct: 656 VARRIHQQSRRCDMPLIVVDPTAIPEGLVESELFGHEKGAFTGADRQKKGLLELAHQGTL 715 Query: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503 F+DE+G++P +Q KLLR LQE+ I+RLGG++ + + R+IAATNRDL V +FR D Sbjct: 716 FIDEVGEIPKSIQVKLLRALQEKTIQRLGGTKPLFSDFRLIAATNRDLAGQVAAGRFRED 775 Query: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563 L+YRLNV P+ +PPLR+R +DI LLA F ++ + NR + E ++L ++ WPGN Sbjct: 776 LYYRLNVIPITVPPLRERKQDIVLLAACFLRRHSLRHNRPAMVLSPEVQQRLCAYPWPGN 835 Query: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623 VRELENVIER VLL+ G+ L L L A + P DE + Sbjct: 836 VRELENVIERGVLLSTGDHLELDL--------------PAGHTRPGADPFTDLPTLDELQ 881 Query: 624 RQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 R+ I VL +T G +AGP GAA LGMKRT+L +RM+RL + Sbjct: 882 RRYIHHVLEKTGGKIAGPDGAAKILGMKRTSLYNRMKRLNVRGNR 926 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 167/476 (35%), Positives = 252/476 (52%), Gaps = 24/476 (5%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 +++ D KN + L S H L Q L DL + Sbjct: 2 AHILIVDDEKNYRIVLGQLLESVGHHVT----RADNPYAALDILSGEQIDLI--ISDLKM 55 Query: 250 WQRDPLLLLL-ASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 + + L ++ I LT AL + + + + + Sbjct: 56 PRMSGIDFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFD-----NEEML 110 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 + V A + LQ EN L +L N ++ S AME L Q+ VA + Sbjct: 111 LTVDKALDY-------SKLQNENWLLRRELEQNRDRT-LVGNSPAMESLRNQIAQVAPAK 162 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 +++LI GE+GTGKE++A+A+H+LSPR +K LV INCAA +LLESELFGH++GAFTGA+ Sbjct: 163 TSILITGESGTGKELVAQALHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGAL 222 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 +G E++DGGTLFLDEIG+ PL LQPKLLRVLQE+ R+GG+ I ++R+IAAT+ Sbjct: 223 ERKKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATH 282 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 R+L QM+ + FR DL+YRLNV L LPPLR R EDIPLL++ F ++++R M + + Sbjct: 283 RNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLS 342 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 ++A L ++WPGNVREL+N++ER +L G +L + +Q + + ++M Sbjct: 343 SQAQHDLYHYEWPGNVRELQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAM 402 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 L P + E++ I L + G+ AA LG+ R+ L ++++ + Sbjct: 403 P-LQQPLPEHLETIEQKLIQAALIDARGV---QAKAAELLGISRSNLQYKLKKYHL 454 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 170/470 (36%), Positives = 245/470 (52%), Gaps = 26/470 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D + + L DL + + GE V+ +Q P L D+ + + Sbjct: 8 ILVADDDPSIRTIL--RDLLEDEGYQVSIALDGEQVIDQ--VQQSSPDLI--LMDVRMPK 61 Query: 252 RDPLLLLLASNGCESALLIP-LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + +L + + +T ++ + + + + L D I Sbjct: 62 IDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDL-----DDITRT 116 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + Q+ L + +E+ ++ II S M+++ + + +VA SD+T Sbjct: 117 INRF-------FEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDAT 169 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GETGTGKE++A IH S PLVK+NCAA+P +LLESELFGH+KG+FTGA Sbjct: 170 VLITGETGTGKELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQ 229 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +GRFE+A GT+FLDEIG++ L Q KLLRVLQERE ER+GGS TI V+ RVIAATN+ Sbjct: 230 RKGRFELAHKGTIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKK 289 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + V +FR DLFYRLNV + LPPLR+R EDIPLL +F QK H + +I E Sbjct: 290 LEEEVAAGKFREDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEE 349 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A++ LM DWPGNVRELEN IERAV+L +G + H V + S + Sbjct: 350 AIKVLMEHDWPGNVRELENTIERAVILAQGGVITTHHLVFSQ----IRTGRNIDLSEVID 405 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 E + I++ L + G AA L + + L +++ Sbjct: 406 KTRSLDEAMRIIESKIILEALEKAKG---DHALAAEILDISESELKRKLR 452 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 163/472 (34%), Positives = 253/472 (53%), Gaps = 28/472 (5%) Query: 204 SLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD-------DLFLWQRDPLL 256 S+ D S C L + E + + D D++L D + Sbjct: 4 SILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDGME 63 Query: 257 LLLASNGCESALLIPLTF-GNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNAD 315 +L L + + A+ + F E+ L ++I + + +A Sbjct: 64 VLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSL-----EKIILTLKHAL 118 Query: 316 AWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICG 375 L++EN L +++ + ++ +S + +L++ + IVA +++ +LI G Sbjct: 119 DL-------SRLEEENVLLKQKINRDY---ELTGKSPPIIELMEMISIVAPTNAWILIMG 168 Query: 376 ETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435 E GTGKE++ARAIH+ S R DKP+V++NCAAIP L+ESELFGH+KGAFTGA RG+F Sbjct: 169 ENGTGKELVARAIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKF 228 Query: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 +IA GT+FLDE+ D+ L+ Q K+LR+LQE++ ER+GG++ I ++VRV+AATN+DL + + Sbjct: 229 DIAHEGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEM 288 Query: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555 E+ +FR DLFYRLNV PL++PPLR R EDIPLLA+ F A I +AL L Sbjct: 289 EEGRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALL 348 Query: 556 MSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPT 615 M WPGNVREL+N IER ++T N + +H R + L Sbjct: 349 MEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPPLPRD--GHKVEPFREPGFELLAGSF 406 Query: 616 TPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + E+Q I + LRE +G ++ A +G++R+ L +++ G+ + Sbjct: 407 REAKMDFEKQYISRKLREFDGNIS---KTAESIGLERSNLHKKIKAYGLESK 455 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 157/477 (32%), Positives = 238/477 (49%), Gaps = 29/477 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 ++ D G + LQ + DL + Sbjct: 7 ILFVDDEPAYCRIF---SKRIGADPRFRVETAGSGAEALERLQHSPADIV--ITDLSMPL 61 Query: 252 RDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + LL + ++ LT + T + + + + + + + Sbjct: 62 MDGIELLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDF-----EMVERS 116 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + + + +Q L E ++I Q + M ++ + + VA++ +T Sbjct: 117 IATILSHK--AAVQAGLCPECLS-----GEQYCFENLIGQDRKMFEIYEMISQVAQTSAT 169 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IA AIH S R+DKP ++INCAA+ L+ SELFGH+KGAFTGA+ Sbjct: 170 VLITGESGTGKELIASAIHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVAR 229 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G FE A GGTLFLDEIGD+ Q LLR+L+ +R+GG+ TI +VR+I ATNRD Sbjct: 230 KKGLFEQASGGTLFLDEIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRD 289 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L ++QFR DL+YRLNV L+ PPLRDR DIPLL ++F ++ N+ ID + + Sbjct: 290 LAAAAREKQFREDLYYRLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRD 349 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L ++DWPGN REL N+IE AV+ +RG +L+ Q R ++ R S Sbjct: 350 AMTLLCNYDWPGNCRELANIIEHAVIFSRGRTLDKDSLPSQIR--------TSDRHSSGL 401 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 L+ T + E I +VL E+N + AA L + R TL +M++ ++ Sbjct: 402 TLNLATATLADAESALIKKVLEESNW---NLKKAAELLDIARGTLYGKMEKYHLTKP 455 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 159/567 (28%), Positives = 280/567 (49%), Gaps = 50/567 (8%) Query: 107 THGSRFTSQDCTLF-NWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVL 165 T G + + + + L+ I TP+++ + ++ + E D ++ +++NA Sbjct: 61 TEGKKESQRRINYYGKTLSVIKTPIIEPTIENQCHLGNYYIFEDISDSVKLKRELSNARS 120 Query: 166 SHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGE 225 S +++++ I + ++ + ++F+ +S E Sbjct: 121 SANAMENVLEKAYDGIVM---IDHNGIITKFNSAYQQFT----GISEQEALGKHVTEVIE 173 Query: 226 SVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLA 285 + + + L+T +P + + A +P+ G L Sbjct: 174 NTRMHKVLETGKPEI--------------GEIQKIKGCEMVATRVPIYEEGEIVGVL--- 216 Query: 286 HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG 345 + + ++ +A+R+ A L ++ + S Sbjct: 217 ----GKVLFRDIKEVKALAERLDAA-------------TNELDYYKGEVRKLKGSKYNFE 259 Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 +I+ S+ + + + I ++SDSTVLI GE+GTGKE+ A AIH S RR +++NCA Sbjct: 260 NIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRVNCA 319 Query: 406 AIPASLLESELFGHDKGAFTGAIN-THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 AIP +LLE+ELFG++KGAFTGA G+FE+A+GGT+FLDEIGD+P ++Q KLLR LQ Sbjct: 320 AIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQ 379 Query: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 ERE++R+G R I ++VR+IA+TNR+L Q++ +FR DL+YRLNVF + +PPLR+ +D Sbjct: 380 EREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDD 439 Query: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 + L + + M ++ + +EA + L S+ WPGN+REL+NV+ER++ + +GN + Sbjct: 440 LEKLINFIIKDLNDEMGLNVNGVSSEANKILNSYHWPGNIRELKNVLERSMNVAKGNIIT 499 Query: 585 LHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND----EEERQRIVQVLRETNGIVAG 640 + E +S + ++ E E E+ I L++TN Sbjct: 500 KDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNN---N 556 Query: 641 PRGAATRLGMKRTTLLSRMQRLGISVR 667 + AA L + R+ L +++ IS + Sbjct: 557 KKKAAELLNIHRSGLYKKLEEYNISDQ 583 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 160/336 (47%), Positives = 218/336 (64%), Gaps = 11/336 (3%) Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 E + II S M+ + + + VA D++VL+ GETGTGKE +A IH LSPR Sbjct: 157 KEVVPPIPNFEGIIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHLSPR 216 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 + KP VK+NCAA+P L+ESELFGH+KGAFTGA+ G+FE ADGGT+FLDEIGD+P + Sbjct: 217 KAKPFVKVNCAALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPAD 276 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 LQ KLLRVLQE+EIER+GG+ I VNVR+IAATNR+L + + + +FR DL+YRL+VFP+ Sbjct: 277 LQVKLLRVLQEKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIM 336 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 L LR+R +DIPLL HF + A + + I ALRQLM + WPGNVREL+N+IER+ Sbjct: 337 LSALRERRDDIPLLIAHFIRLYASATGKGVSDIAPAALRQLMDYAWPGNVRELQNLIERS 396 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 VLL+R + + + + + + E ER+ I+ VL++ Sbjct: 397 VLLSRESIIREVILPVSVK-----------KETTVVSTETDIKTIVELEREHILTVLKKC 445 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 N ++GP GAA L + +TL S+M++LGI R L Sbjct: 446 NHKISGPGGAAELLNLPPSTLASKMKKLGIVKRHTL 481 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 168/476 (35%), Positives = 245/476 (51%), Gaps = 36/476 (7%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 + + + + L + G L Q R+ D Sbjct: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALA----QVREKVFDLVLCD 56 Query: 247 LFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 + + + D + L A+ I + + A+ + + + D Sbjct: 57 VRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDF-----D 111 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 R+ + A A ++ +L + +I S AM+ LL ++ +VA Sbjct: 112 RLQETLEKALAHT---------RETGAELPSASAAQF---GMIGSSPAMQHLLNEIAMVA 159 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 SD+TVLI G++GTGKE++ARA+H S R DKPLV +NCAA+ SLLESELFGH+KGAFT Sbjct: 160 PSDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFT 219 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA GRF ADGGTLFLDEIGD+ +Q +LLR +QERE++R+G ++TI V+V +IA Sbjct: 220 GADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIA 279 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 AT+RDL + V +FR DL+YRLNV +E+P LR R EDIPLLA HF ++ A +A+ Sbjct: 280 ATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVK 339 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 +A+ L+ +DWPGN+RELEN IERAV+L G ++ P E+SA Sbjct: 340 GFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIKAENSA-- 397 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 + E++ I+ L +T G AA +LG+ R TLL+++ R Sbjct: 398 ---------EIQPLVDVEKEVILAALEKTGG---NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 164/372 (44%), Positives = 238/372 (63%), Gaps = 17/372 (4%) Query: 297 CQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMED 356 +++ + +R + + + L+ L+Q+N L E++ DI+ +S AM Sbjct: 784 LAVIEDVTERKLMQEQLQNRLLEIERLKGQLEQDNIALREEVSLLSPHDDIVARSPAMRQ 843 Query: 357 LLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESEL 416 +L +V+ VA +DSTVLI GETGTGKE+IARA+H LS R+ +PLV +NCA++P +L+ESEL Sbjct: 844 VLLRVEQVAPTDSTVLITGETGTGKELIARAVHNLSARKGRPLVTVNCASLPPTLMESEL 903 Query: 417 FGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476 FG +KGA+TGA++ GRFE+ADGGTLFLDE+G+LP ELQ K+LRVL+E ERLG +++ Sbjct: 904 FGREKGAYTGALSRMAGRFEVADGGTLFLDEVGELPPELQAKMLRVLEEGRFERLGSTKS 963 Query: 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKM 536 + VNVR++AATNRDL Q+V+ +FR DL+YRLNVFP+ +PPLR+RPEDIP L F + Sbjct: 964 LHVNVRILAATNRDLAQLVQAGRFRRDLYYRLNVFPIAIPPLRERPEDIPPLVWAFIHQF 1023 Query: 537 ARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLP 596 + M + + + ++ L WPGNVREL NVIE A++++ G++L + Sbjct: 1024 EKRMGKHVQRVLKRSMDALERHAWPGNVRELRNVIEHAMIVSSGSTLKV----------- 1072 Query: 597 TLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL 656 A+ +E ER+ I++VL VAG GAA LG+K TTL Sbjct: 1073 ------FPPMIRAEDSSAEVLNLEESERRHILRVLTLAGWRVAGKGGAAEILGLKPTTLE 1126 Query: 657 SRMQRLGISVRE 668 +RM++LG+ Sbjct: 1127 ARMKKLGVRRPR 1138 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 161/475 (33%), Positives = 247/475 (52%), Gaps = 36/475 (7%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 ++L D K + L + + G+ + L + L D+ + + Sbjct: 4 ILLVDDDKGHRTMLKVNLGELGYQVI----TAGDGDEVLAKLTKNKIDLI--LLDMKMPR 57 Query: 252 RDPLLLLLASNGCESALLIP-LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D L L + + + + +T + A+ + + + + D + IA Sbjct: 58 IDGLATLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDI-----DNLHIA 112 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A + L + ++ +II +S M++L Q+ ++A SD+T Sbjct: 113 ISKALHQKISPPL---------SPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDAT 163 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 +L+ GE+GTGKE++A AIH+ S R++ L++INCAA+ +LLESELFGH+ GAFTGA Sbjct: 164 ILLSGESGTGKELVATAIHRHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQ 223 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G FE AD GTLFLDEIGD+ L Q K+LRVLQE E ER+GG+ +I VNVR+IAA++R+ Sbjct: 224 KKGLFERADKGTLFLDEIGDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRN 283 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L +++E+ FR DLF+RL+V PL LP LR+R DIP+LA F + + I E Sbjct: 284 LEKLIEEGTFRQDLFFRLSVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQE 343 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 AL LM + WPGN+RELEN IER V+L G + H Q + E S+ Sbjct: 344 ALDLLMEYPWPGNIRELENSIERGVILCLGEQITAHELPPQFFRNRSPGELSS------- 396 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + E++ I Q L + A +LG+ R TLL++++ G+ Sbjct: 397 -----RDTLRDVEKRAIQQALARSG---FNKSATAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 247/480 (51%), Gaps = 28/480 (5%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 S+++ D + ++ L + +PG L Q + + DL + Sbjct: 8 GSILIVDDERGQRDILKLILRKEGYDIV---DVPGVGEALEQLDRREFDLIL---TDLKM 61 Query: 250 WQRDPLLLLLASNGCESALLIP-LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 + L LL + + +T A+ + + E+ + Sbjct: 62 QGQSGLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLER--------- 112 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 N + L +EN L +++ S I ++ M ++ + V +A + Sbjct: 113 ---DNLVLTLQRAFERIGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATT 169 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 STVLI GE+GTGKE++ARAIH+ S RRD P + INCAAIP +L+ESELFGH+KG+FTGA Sbjct: 170 STVLIVGESGTGKELVARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAH 229 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 G FE A+GGT+FLDEIG++ + +Q KLLR +QE+E+ R+GG IP++VR+I+ATN Sbjct: 230 ARELGVFEAANGGTVFLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATN 289 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 ++L Q + FR DL+YRLNV + LPPLR+R D+ LA+ F +K + ++ I Sbjct: 290 KELEQEIRRGSFREDLYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGIS 349 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 AL+ LM++ WPGNVR+LE+VIERAVL+ + + + S L + Sbjct: 350 RPALKLLMNYSWPGNVRQLESVIERAVLMAESSVIEPGDLP------AEITSTSLLAGVV 403 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 L P + + E+ I++ + + ++ AA LGM TL R+++ I + Sbjct: 404 PFDLPPEGIDMETLEKNLIIKAMERADWVIG---KAAPLLGMSYKTLQYRLEKFAIERPD 460 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 164/478 (34%), Positives = 236/478 (49%), Gaps = 23/478 (4%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D+ + S H + M + D+ L Sbjct: 8 LLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLG-------KFDLSLLDVRLPD 60 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 + + L+ + + I + G A+ + F ++ + D + + Sbjct: 61 GNGIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDI-----DEMLVR 115 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + R + + +N L E + S +I Q A++ L + V ++A SDST Sbjct: 116 IDELIKTRQI-------KADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDST 168 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+G GKEV+A+A+H+ R KPLV INC AIP LLESELFGH KGAFTGA+ Sbjct: 169 VLITGESGCGKEVLAKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRA 228 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFEIA+GGT+FLDEIGD+ +LQ KLLRVLQER E +G ++I V+VRVIAAT+RD Sbjct: 229 RPGRFEIANGGTIFLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRD 288 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + +FR DL+YRLNV PL LPPLR+R +DI LL HF + + I + E Sbjct: 289 LEAEIAAGRFREDLYYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDE 348 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 R ++++ WPGNVREL+N+IER L R + L + S Sbjct: 349 VKRIILNYQWPGNVRELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENA 408 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 DE E I+ L+ AA L M RTTL+ ++++ G+ + Sbjct: 409 ECIDLKSTVDEFESHLILSALQRFQW---NKNQAANFLAMNRTTLVEKIKKKGLQPTK 463 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 155/476 (32%), Positives = 229/476 (48%), Gaps = 28/476 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D + L A + + Q LQ+R + + + Sbjct: 8 ILVIDDDLRMRQLLR----DTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMPHFS 63 Query: 252 RDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV 311 +L + +S +++ +T A+ + + ++ + D + + V Sbjct: 64 GIEILEQALAANPDS-MVVLVTGHGTVESAVEAIKKGAYDYIQKPFE-----PDELLLTV 117 Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 A L+QEN +L +Q+ G +++ +S ++ L + + VA +TV Sbjct: 118 QRATEH-------ARLRQENRRLQQQVAGCRG-DELVGESPPLKKLKELIAQVAPFSTTV 169 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 LI GETGTGKE+ A+ IH+ S R +P + INC A+P +LLESELFGH KGAFTGA Sbjct: 170 LINGETGTGKELAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDK 229 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDL 491 G FE D GTLFLDEI + L Q KLLRVLQE ++GG + +VRVIAA++R L Sbjct: 230 PGLFETVDQGTLFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPL 289 Query: 492 WQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEA 551 + V FR DLFYRLNV LELPPLR R EDIPLLA HF K ++ + IP Sbjct: 290 SEGVAAGSFRRDLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPV 349 Query: 552 LRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQL 611 + +L+ WPGNVRELEN +ERA+L G L L Sbjct: 350 ITRLLDHSWPGNVRELENAVERALLFCPGQELQAEHLPP-------LETGGEEAELHTTA 402 Query: 612 LHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + E++ I++ L+ NG A LG+ +L ++++ I+ Sbjct: 403 DDAKSLTMASMEKKLIIKALQRANGH---RGKTAELLGISPASLWRKIKKYEINTP 455 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 147/383 (38%), Positives = 224/383 (58%), Gaps = 14/383 (3%) Query: 286 HTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIG 345 S + + +L + AV M L L+Q L+ L Sbjct: 92 KDGSYITVLKTAAVLSDDQGQTMGAVEIVTDISEMDRLDRQLRQ----LTRTLDEESSFQ 147 Query: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 I+ S+ M++L + V+ A+SD V ICGE+GTGKE++A+AIH LSPR ++P +++NCA Sbjct: 148 GIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQVNCA 207 Query: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 A+ SLLESELFGH KGAFTGA+ +GRFE A G +FLDEIGDLP+ +Q KLLRVL+ Sbjct: 208 ALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLET 267 Query: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 + ER+G +RTI V++R I ATN++L ++ FR DLFYR+NV P+ LPPLR+R ED+ Sbjct: 268 KTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDV 327 Query: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585 P L F ++++R + I + EA+R M + WPGNVREL++ +E + +L G+ + Sbjct: 328 PHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGDRIRS 387 Query: 586 HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAA 645 + + L + A + ++Q +++ L++++G AA Sbjct: 388 ENLPEYLKDGGNDFQAVDLPPAPA-------ENLQQRQKQELIEALKQSSG---NKSQAA 437 Query: 646 TRLGMKRTTLLSRMQRLGISVRE 668 LG+ R T+L+RM++ GI ++ Sbjct: 438 RLLGINRVTVLNRMRKYGIDLQR 460 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 165/472 (34%), Positives = 238/472 (50%), Gaps = 26/472 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D + L + P E T++ D+ + Sbjct: 10 ILIADDDPGIRGLLCEVFDEEGYLTE-----PAEHGGEVLAKMTKKHPYDLLIMDVRMPG 64 Query: 252 RDPLLLLLASNGC-ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 +D L +L + +I +T + A+ + + + + + + + Sbjct: 65 QDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDV-----EEVTLV 119 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V + + L+ S +I S AM+++ +Q+ VA +D+T Sbjct: 120 VKRLFDHQQLASKVRELEA---------KSFDPRDKMIGNSPAMQEIYKQIGRVAHTDAT 170 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GETGTGKEV+A IH S RR+ P+VK+NCAA+P SLLESELFGH+KGAFTGA+ Sbjct: 171 VLITGETGTGKEVLANLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQ 230 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +GRFE+A G++FLDEIG++ L Q KLLR+LQERE ER+GG+ T+ V+VRVIAATNRD Sbjct: 231 RKGRFELAHKGSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRD 290 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L V FR DL+YRLNV L LP LR R DIPLLA+ F K + I E Sbjct: 291 LEADVRAGTFREDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEE 350 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ +L ++DWPGNVR+LE+ IERAV+L+RGN + L D A R Sbjct: 351 AMERLNNYDWPGNVRQLEHEIERAVILSRGNVITSEHMSLVPSSRSALQVDIAARLR--- 407 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + ER + + L + + + AA LG+ R ++ Sbjct: 408 EKSTLEELLADVERLALQEALVQHD---DDLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 173/480 (36%), Positives = 247/480 (51%), Gaps = 34/480 (7%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 +++ D +KN + + A H + + T + + + DL + Sbjct: 29 GKVLVVDDQKNMRATTAILLRQAGH------VVEEAEDGASATQRVQHESFDVVLTDLRM 82 Query: 250 WQRDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 D + +L A +I +T A+ + F + + + Sbjct: 83 PTVDGMEVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFK-----ESEVL 137 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 + V A + L E + +E+ G+ I+ +S AM ++L +V VA +D Sbjct: 138 LRVAKAL-------EKRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTD 190 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 +TVL+ GE+GTGKE++ARA+H S R DKP V +NCAAI +LLESELFGH +GAFTGA Sbjct: 191 ATVLVTGESGTGKELVARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGAT 250 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 RG FE A+GGTLF+DEIG+ Q KLLR LQE EI R+G S + VNVR+IAATN Sbjct: 251 RARRGMFEEANGGTLFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATN 310 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 +DL + + +R+FR DLFYRLNV PL +PPLR+R ED+PLLA HF Q+ + + Sbjct: 311 QDLRRAIAERRFREDLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLT 369 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 EA+ L++ DWPGNVRELEN+IE+A L G + ++R P Sbjct: 370 PEAVASLVAHDWPGNVRELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVT----- 424 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 ++ ER+ I L + A LG+ TTL +M+RLGI RE Sbjct: 425 ------LADAVEDTERRAITAALARCGNDLG---RVARDLGISGTTLWRKMKRLGIEARE 475 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 163/471 (34%), Positives = 246/471 (52%), Gaps = 37/471 (7%) Query: 199 KNEKFSLWCSDLSASHCACLPRCMPGESVLLTQT-------LQTRQPTLTHRADDLFLWQ 251 E+ + D SHC L + G + + R+ D+ + + Sbjct: 2 SGEQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAE 61 Query: 252 RDPLLLLLASNGCESALLI-PLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + L ++ + +T + A+ + + + + D++ + Sbjct: 62 MDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDF-----DKLQLT 116 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A A +++ S + ++ S AM LL + +VA SD+T Sbjct: 117 LSEALAHTRLSE------------SPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDAT 164 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE++ARA+H S R +PLV +NCAA+ SLLESELFGH+KGAFTGA Sbjct: 165 VLIHGESGTGKELVARALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKR 224 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRF ADGGTLFLDEIGD+ +Q +LLR +QERE++R+G ++T+ V+VR+IAAT+RD Sbjct: 225 REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRD 284 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + V +FR DL+YRLNV +++PPLR R EDIP LA++F Q+ A +A+ + Sbjct: 285 LAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQ 344 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L+ + WPGN+RELEN +ERAV+L G ++ P + Sbjct: 345 AMDLLIHYAWPGNIRELENAVERAVVLLTGEYISERELPLAITGTPVADAPHG------- 397 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 + E E++ I+ L T G AA RLG+ R TLL+++ R Sbjct: 398 --DDSIQPLVEVEKEAILAALERTGG---NKTEAARRLGITRKTLLAKLSR 443 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 162/479 (33%), Positives = 237/479 (49%), Gaps = 23/479 (4%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 +++ D + + L H + + RQ D+ + Sbjct: 2 GRILVVDDELSMREFLKILLEEEGHG------VCCAGDGEAALARLRQEDFDLLISDIRM 55 Query: 250 WQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 + L LL + + L + L A+L + + + ++ I D ++ Sbjct: 56 PPPNGLELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKV-DEIKDIVS 114 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 A+ + + L + + + ++ +N G II S M + + + VA + Sbjct: 115 TALSS----------RRQLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQ 164 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 + VLI GE+GTGKE++ARAIHQLSP V I C+AIP SL ESELFGH KGAFTGA Sbjct: 165 ANVLIHGESGTGKELVARAIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGAT 224 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 G FE A+ GT FLDEIG+L Q KLLRVLQEREI+R+G S I +N R+I+ATN Sbjct: 225 TNRTGLFEQANYGTAFLDEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATN 284 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 RDL + V +FR DLFYRL V P+ +PPLR+R D+PLL +HF K +R + I I Sbjct: 285 RDLEEEVAAGRFREDLFYRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKIS 344 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 + AL LM++D+PGNVRELEN+IER V + + R + R S+ Sbjct: 345 SYALELLMNYDFPGNVRELENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSL 404 Query: 609 AQLL--HPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + P + ERQ I++ L++ AA L +L ++++ I Sbjct: 405 EADVFNRGLEPALTDFERQMIIKALQKAGN---SKTRAAELLNTSFRSLRYKIKKYEID 460 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 148/331 (44%), Positives = 211/331 (63%), Gaps = 18/331 (5%) Query: 334 LSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSP 393 LS++ SN +I +S M +L VA + + VL+ GE+GTGK V+A+ IH S Sbjct: 218 LSQEAASNKS--RLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSS 275 Query: 394 RRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPL 453 RRDKP VKINCAAIP +LLESELFG+ KGAFTGA+ G+ E+ADGGTLFLDEIG+LP Sbjct: 276 RRDKPFVKINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPT 335 Query: 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPL 513 LQ KLL ++QE+E ERLG ++T V+VR+IAATN+DL Q+V++ +FR DL+YRL V + Sbjct: 336 YLQSKLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISI 395 Query: 514 ELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIER 573 ++P LR+R EDIP L +F ++ N+ I I EA+R L+++D+PGN+RELEN+IER Sbjct: 396 KVPALRERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIER 455 Query: 574 AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRE 633 AV+L +G + + + + + L + E+Q+I++VL Sbjct: 456 AVILAKGKFIEVSDLPDEIVYNTKILTQNDLDEEID-------------EKQKILRVLES 502 Query: 634 TNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 N AA L + R TL ++++ G+ Sbjct: 503 VNW---NKSKAAKILNIDRVTLWRKLKKYGL 530 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 235/479 (49%), Gaps = 28/479 (5%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ + + + L + +A + L+ + D+ L Sbjct: 4 ILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLI------GKQRFDVVVTDMRLPG 57 Query: 252 RDPLLLLLASNGCESAL-LIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D L +L A + ++ +T A+ + + + + + Sbjct: 58 ADGLEVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFE-----PAHLLSL 112 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V Q + +++ +L E++ + +I+ S +M + + + AK+DS+ Sbjct: 113 VERFL-------CQTAHVEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSS 165 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 V+I GE+GTGKE++A A+H SPR DKP +K+NCAAIP +LLE+E+ G++KGAFTGA+ Sbjct: 166 VIIYGESGTGKELVANAVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQR 225 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G+ E ADGGT F DEIGD+ LQ KLLRVL+ R ER+GG+ + V++R I AT R Sbjct: 226 KKGKLETADGGTFFFDEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRR 285 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + +FR DL+YR+NV P+ LPPLR+R +DIPLL F R R + I E Sbjct: 286 LPDEIRKGKFREDLYYRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPE 345 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L S+ +PGNVREL++ +E AV + + R E S Sbjct: 346 AMELLRSYPYPGNVRELKHAVEMAVTFCSDRVITPSCLPGEIR------EGSPALQGWRG 399 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREV 669 E ERQ I+ VL++T G AA LG+ R TL +++ + + Sbjct: 400 DAGALESSRKETERQTIINVLKKTGGR---KMAAAKALGISRETLWRKLKEYNVDTDAI 455 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 165/484 (34%), Positives = 252/484 (52%), Gaps = 26/484 (5%) Query: 189 SVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF 248 +++ D + + S+ + G + + T P L DL Sbjct: 4 KGIILIVDDEETIRLSVREFLDAQG----YEAIAAGSCEEALEKMDTFMPDLI--LLDLR 57 Query: 249 LWQRDPLLLLLASNGCES-ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRI 307 L + + L+ + AL++ +T A+ + + + E+ +L DR+ Sbjct: 58 LPNINGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKL-----DRL 112 Query: 308 AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 V A + + ++++ E+ II S M+++ + VAKS Sbjct: 113 RSVVEKALRRQGLRQEVLEIKEKQWTFDEESDGI-----IIGNSPQMKEIYSLIKQVAKS 167 Query: 368 DST-VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTG 426 ST VLI GE+GTGKE++ARA+H+LS R+ V INCAA+ SLLE+ELFG++KGAFTG Sbjct: 168 SSTTVLIQGESGTGKELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTG 227 Query: 427 A-INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 A G FEIAD GT+FLDEIG++ + LQ KLLR+LQER+ +R+GG + I ++VR+IA Sbjct: 228 AATAGKPGLFEIADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIA 287 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 +TNR+L + + FR DL+YRL V P+ +PPLR+R EDI LL K+F K + I Sbjct: 288 STNRNLEEEIASGNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNIC 347 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 IP + R L+ + WPGN+REL+NV+ER VL+ G++L+ S + + Sbjct: 348 DIPPDTERILLEYGWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGIT 407 Query: 606 SSMA----QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 E+Q I VL+ET+ AA LG+ RTTL ++++ Sbjct: 408 VDGNTDCVSSDGLDARSLAFMEKQHIENVLKETSWR---RTEAARVLGINRTTLYNKIKE 464 Query: 662 LGIS 665 GI+ Sbjct: 465 YGIA 468 >UniRef50_B4ULZ7 Transcriptional regulator, NifA, Fis Family n=2 Tax=Anaeromyxobacter RepID=B4ULZ7_ANASK Length = 535 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 165/545 (30%), Positives = 250/545 (45%), Gaps = 36/545 (6%) Query: 148 EKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC 207 + L +I + DL+ + + G+ + ++ L D E F Sbjct: 4 RRAELEAETLYEIGKVLSLSTDLNKAFTSALNLLALYLGMENGTLSLFDPVTGEVFIEAA 63 Query: 208 SDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESA 267 ++ L R PGE L+ + P ++ + Sbjct: 64 PEMRDEE-RILGRFRPGEG-LVGRIFANGMPVAIPDIAREPVFLNRTGSWRDLERDPRAF 121 Query: 268 LLIPLTFGNHTPGALLLAH--TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325 + +P+ G G L + L + +LL +A + V + Sbjct: 122 VGVPVQDGRAVLGVLTVDRPHRGGPLSLGRDVRLLTAVAHLMGARVRLMQLESPQRRAAQ 181 Query: 326 SLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIA 385 L +L ++ Q M ++L+ V VA+S +TVL+ GE+GTGKE+ A Sbjct: 182 DLPPVAPELER-------FPGVVGHGQRMREVLRLVSRVARSRATVLLRGESGTGKELFA 234 Query: 386 RAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFL 445 A+H+ SPR ++P V +NCAA+P +L+ESELFGH+KGAFTGA GRFE ADGGTLFL Sbjct: 235 HALHEASPRAERPFVAVNCAALPEALVESELFGHEKGAFTGAAAARPGRFEQADGGTLFL 294 Query: 446 DEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505 DE+G+L Q KLLR LQER+ ER+GG RT+ V+VR++AATNRDL +MV FR DL+ Sbjct: 295 DEVGELSPGAQAKLLRALQERQFERIGGRRTVTVDVRLVAATNRDLEEMVRAGTFRLDLY 354 Query: 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVR 565 +RL+V LELPPLRDRPED+ LA+HF +A R ++ L L + GN R Sbjct: 355 HRLSVVTLELPPLRDRPEDLAALAQHFLAALAEEHGRPA-SLGPGVLEVLRACRLSGNAR 413 Query: 566 ELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEN------ 619 +L N +ERA++ + G++L + L + + P Sbjct: 414 QLRNCLERALVSSTGDALGRDDFPCARAGGVPCMLERVLEPAAPRAAAPAPLPLPPPASP 473 Query: 620 ---------------DEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + +R R++ L AA LGM + R+++ GI Sbjct: 474 AAPPAPGPAGAAPGTEAADRARVLAALERCG---YVQAKAARLLGMTYRQVAYRVRKYGI 530 Query: 665 SVREV 669 ++ + Sbjct: 531 AMERL 535 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 149/386 (38%), Positives = 226/386 (58%), Gaps = 12/386 (3%) Query: 283 LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNL 342 + S+ +F + I V + + L+QE + + + Sbjct: 207 HVLINSAPVFDSGKVIGGLAVEKDITEIVQLNQELNKASTQVKLLEQE---IRKISGQDC 263 Query: 343 GIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402 +I +S+A++ L+ ++ +++TVL+ GE+GTGKE++ARAIHQ SPR P + + Sbjct: 264 AFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVV 323 Query: 403 NCAAIPASLLESELFGHDKGAFTGAI-NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLR 461 NC AIP +L ESELFG++ GAFTGA G FE+A+GGTLFLDE+G++P+E+Q KLLR Sbjct: 324 NCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLR 383 Query: 462 VLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDR 521 VLQE R+GGS+++ VNVRV+AAT+R+L M+ RQFR DL+YRLNV LE+PPLRDR Sbjct: 384 VLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDR 443 Query: 522 PEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581 EDIP L F Q+ + ++ I I + + + WPGNVREL+N +ER V+LT G+ Sbjct: 444 REDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDGD 503 Query: 582 SLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGP 641 ++ R ++ ++ S + E E+Q I++ L++ G Sbjct: 504 IIDEAALPENLRRNTYISLVTSPVSQGKLMNVAV-----EAEKQLILKTLQQVRG---NR 555 Query: 642 RGAATRLGMKRTTLLSRMQRLGISVR 667 AA LG+ R+TL ++++LGI + Sbjct: 556 SEAARVLGIPRSTLYYKLRQLGIPAK 581 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 233/482 (48%), Gaps = 29/482 (6%) Query: 187 LASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADD 246 + + +++L D ++ S+ L H E+ + R D Sbjct: 1 MKNSTILLVDDDRHLLESM-ALWLREQHVEVETAASCQEA-----IAKMRDRAFDIVLSD 54 Query: 247 LFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIAD 305 + L D +L S + L G A+ + + I + Sbjct: 55 IRLDDGDGFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPL-----IDE 109 Query: 306 RIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVA 365 + +++ A + Q + +EN QL QL G+ +I+ M+ + V+ +A Sbjct: 110 ELLLSIERALS-------QRKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIA 162 Query: 366 KSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425 + +TVLI GE+GTGK ++ARAIH+ RRD+ V++ C A+P SLLESELFGH G+FT Sbjct: 163 DTRATVLITGESGTGKSLLARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFT 222 Query: 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIA 485 GA G+F AD GT+FLDEIG LQ KLLRVLQE E E +G ++T V+ RVI Sbjct: 223 GATGDKIGKFTQADKGTIFLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVIL 282 Query: 486 ATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAID 545 ATN L Q V +FR DL+YR+NV +E+PPLR+R DIPLLA HF Q+ + Sbjct: 283 ATNEKLEQAVAAGRFRQDLYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQ 342 Query: 546 AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 + + + ++WPGNVREL+NV+ERAVLL RG + + + Sbjct: 343 GFSDDVITAMQRYNWPGNVRELQNVVERAVLLGRGPKVQVEDLTPAI-------ASGQIV 395 Query: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 S + ER I+ VL A LG+ RTTL +M+RLG+ Sbjct: 396 SIDPVGNKALKEALESPERAIILDVLEMHQW---NRNATADALGINRTTLYKKMKRLGLD 452 Query: 666 VR 667 + Sbjct: 453 KQ 454 >UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis Family n=8 Tax=Desulfovibrio RepID=B8DQY9_DESVM Length = 579 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 159/454 (35%), Positives = 238/454 (52%), Gaps = 9/454 (1%) Query: 150 DRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD 209 + L I+ LDL+ + +V R + + ++ L D + Sbjct: 6 QSLKLKALYAISQVFDRALDLEQALGEVLRVLSETLSMKRATITLPDRETGQLVIAASHG 65 Query: 210 LSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALL 269 L+ + + QT +P + L+ D G S L Sbjct: 66 LTPEERGRG--VYRLDEGVTGTIFQTARPYIVRDVRTDPLFL-DRTGARKVEKGKISFLG 122 Query: 270 IPLTFGNHTPGALLLAHTSSTLF-SEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQ 328 +P+ G L + S + E+ + L +A +A + + + ++L+ Sbjct: 123 VPILKQGAPIGVLNVDRLFSDDVSTSEDVEFLGIVATLVAQFLS---LNEQLNERVDTLR 179 Query: 329 QENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAI 388 +EN +L ++L G I+ +S AM D+ +Q++ VA + +TVL+ GE+G GK +IAR + Sbjct: 180 RENVKLRTRVLDERG-DYIVGRSAAMLDVQRQIERVAPTRATVLLLGESGVGKTLIARLL 238 Query: 389 HQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEI 448 H LS R P VK+NCA+IP +LLE+ELFGH+KGAFTGA GRFE A GT+FLDEI Sbjct: 239 HNLSDRMVHPFVKVNCASIPETLLEAELFGHEKGAFTGAAAVRAGRFEEAHRGTIFLDEI 298 Query: 449 GDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL 508 G+LP +Q KLLRV+Q+RE ERLG ++T V+VR++AATNRDL + E +FR DL+YRL Sbjct: 299 GELPPGIQAKLLRVIQDREFERLGSNQTHRVDVRIVAATNRDLALLSEQGRFRQDLYYRL 358 Query: 509 NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELE 568 VFP+ +P LR+RP+D+ L HF K AR R + + +AL L +WPGNVRE+E Sbjct: 359 CVFPIRVPSLRERPDDVERLLNHFLAKAARDY-RRVITLAPDALGLLRRHEWPGNVREME 417 Query: 569 NVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602 N+IER +L+ ++ T N Sbjct: 418 NLIERLAILSESGQIDRRFLEPLLEHSATENAQP 451 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%) Query: 591 QSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGM 650 ++ A + ER I+ LR + AA LG+ Sbjct: 496 APHGATAAHDAHAGHGDADLHGDAHPTTLRDIERNEIIAALRRNGWV---QHRAAAALGI 552 Query: 651 KRTTLLSRMQRLGIS 665 + R++++G+S Sbjct: 553 TPRQMGYRIRKMGLS 567 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 168/471 (35%), Positives = 243/471 (51%), Gaps = 39/471 (8%) Query: 199 KNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQ-------PTLTHRADDLFLWQ 251 EK + D SHC L + G + R+ D+ + + Sbjct: 2 TGEKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMAE 61 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + L A+ + + + A+ T + + + DR+ Sbjct: 62 MDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDF-----DRLQET 116 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + + A E + ++ +S AM+ LL ++ +VA SD+T Sbjct: 117 LEKSLAHAQEVAG------------ELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDAT 164 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI G++GTGKE++ARA+H S R DKPLV +NCAA+ SLLESELFGH+KGAFTGA Sbjct: 165 VLIHGDSGTGKELVARALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKR 224 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRF ADGGTLFLDEIGD+ +Q +LLR +QERE++R+G ++T+ V+VR+IAAT+RD Sbjct: 225 REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRD 284 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L Q +FR DL+YRLNV +E P LR R EDIPLLA+HF Q+ A +A+ + Sbjct: 285 LAQEASAGRFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQ 344 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L+ + WPGN+RELEN IERAV+L G ++ +M Sbjct: 345 AMDLLIHYAWPGNIRELENAIERAVVLLTGEYISERELPLAI-----------ANQAMPL 393 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQR 661 + E E++ I+ L +T G AA +LG+ R TLL+++ R Sbjct: 394 MPAQAIQPLVEVEKEVILAALEKTGG---NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 186/514 (36%), Positives = 258/514 (50%), Gaps = 14/514 (2%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 VL I N V + + + + + + S + + +L S Sbjct: 9 VLQAIANGVAAET-GEAFFDALVQHLAGALNVQSAWVTEWHPEASRLRAL----SFWSRG 63 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLT-F 274 +P + + + Q + + L+ DP L S + +PL Sbjct: 64 RFVPDYEYPIHGTPCEAVISGQRLVVVPERVVELYPDDPD---LPGQDAVSYMGMPLRDT 120 Query: 275 GNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL 334 G L + + + R A + R + L + E L Sbjct: 121 DGTVLGNLAVLDSRPLEADATCQAVFGIFGARAAAELARLRRDRRLRALND----EAAAL 176 Query: 335 SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPR 394 +L S G +I+ +S A+ LL + VA S++TVLI GETGTGKE+IARAIH+ S R Sbjct: 177 RAELGSLRGFEEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIHRHSRR 236 Query: 395 RDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLE 454 PL+K+NCAAI A+L ESE FGH+KGAFTGA GRF++ADGGTLFLDE+G++PL+ Sbjct: 237 SQGPLIKVNCAAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGEMPLD 296 Query: 455 LQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLE 514 LQ KLLRVLQE E E +G RT+ V+VRVIAAT+RDL QMV + FR DL YRLNVFPL Sbjct: 297 LQAKLLRVLQEGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNVFPLH 356 Query: 515 LPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERA 574 PPLR+R ED+ LLA+ ++AR + + +L + WPGNVRELENVIERA Sbjct: 357 APPLRERGEDVVLLAEAIATRLARQEGATLAPLSPADRARLKAHPWPGNVRELENVIERA 416 Query: 575 VLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRET 634 + T ++ + + L + + T E + ER I + L Sbjct: 417 WI-TGTDTPDGRVLNLVRALPGSEVTPRTPGLAADPDAVFTAAEMLQMERSNIERALVSC 475 Query: 635 NGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 ++G GAA LG+ TL SRM+ LGI + Sbjct: 476 QWKLSGVGGAARLLGLHPNTLASRMKSLGIRRPD 509 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 155/472 (32%), Positives = 232/472 (49%), Gaps = 24/472 (5%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 +++ D + H G+ L + + Q + DL + Sbjct: 2 ARILIIDDDPAMVSVISDICQERGHQTVA--YASGQKALESLAVHAPQLVI----TDLRM 55 Query: 250 WQRDPLLLLLASNGCESALLIP-LTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 + L +L + +T AL + + + ++ D + Sbjct: 56 DKVGGLDILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKV-----DELQ 110 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 + + A +SL +EN L + + +II S M+++ + VA +D Sbjct: 111 LTIQRALD-------NQSLVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTD 163 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 ST+LI GE+GTGKE++ARA+H S R+ +P V INC+A+P +LLESELFGH KG+FTGA+ Sbjct: 164 STILIQGESGTGKELVARALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAV 223 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 G FE A+GGT+FLDE+ + LQ KLLRVLQER+I R+G ++++P+NVRV+AATN Sbjct: 224 QDKIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATN 283 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 L ++ FR DL+YRL V P+E+P LR+RP+DIPLL HF QK A I Sbjct: 284 EALGDKIKGGNFREDLYYRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKID 343 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 +A+ L + WPGNVRELEN +ERA L + Q T S Sbjct: 344 PKAIEMLAKYRWPGNVRELENAVERACALCDDALIRTTDLPPQVIRHAT--APPVEHSGT 401 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 + E+ER+ I + ++ AA LG+ TL +++ Sbjct: 402 LPVGQTLDEYIREQERRYIEETIKFNGN---SREKAAKMLGISMATLYRKLE 450 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 155/382 (40%), Positives = 231/382 (60%), Gaps = 21/382 (5%) Query: 284 LAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLG 343 + N LL+ + ++ V + L E+L Sbjct: 113 VDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVA-----------LKEELKGRYS 161 Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 G II +S+ M++L + ++A+S STVLI GE+GTGKE++A A+H+ SPRR+ P VK+N Sbjct: 162 FGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFVKLN 221 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAA+ +LESELFGH KGAFTGA+ + GRFE+A GGTLFLDEIG++ +Q KLLRVL Sbjct: 222 CAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRVL 281 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QE E ER+GG++T+ V+VRVIAATNRDL Q +E+ FR DL+YRL V P+ LPPLR+R Sbjct: 282 QEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQG 341 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 D+PLL + F ++ + + I + +EA++ L+++ +PGN+REL+N+IE A LL + + Sbjct: 342 DLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCNDSRI 401 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 +L LLP ++ S L +M + E++ I + E+ G V+ Sbjct: 402 DLRHLP--GDLLPAQSQSSFLELAMMEENP-----VRYVEKELIRLAMAESGGNVS---E 451 Query: 644 AATRLGMKRTTLLSRMQRLGIS 665 A +L M R+TL R++ + ++ Sbjct: 452 VARKLSMGRSTLWRRLKEMKLA 473 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 153/479 (31%), Positives = 239/479 (49%), Gaps = 24/479 (5%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 +++ D ++ + +L + L+ + + DL + Sbjct: 2 ARILVVDDEEDIRTALRIVLSGEG----YEVETAANGRVAIDLLE--KHSFDMVITDLKM 55 Query: 250 WQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 D +L +S + + A+ +T + + + + I Sbjct: 56 ELADGYDVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPF-----LHEDIK 110 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 V N SL+ EN L QL L I+ S+AM + ++ A + Sbjct: 111 FTVRNILEH-------GSLRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTK 163 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 + ++I GE+GTGK ++A A+HQ SPRRDKP + INCAAIP +LLESELFG+ KGAFTGA Sbjct: 164 ANIMITGESGTGKGLLAEAVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGAN 223 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 + G +ADGGTLFLDEIGD+P+ +Q K+L+VL+ E+ LG ++T V++R+I+ATN Sbjct: 224 SNKTGLITMADGGTLFLDEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATN 283 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 +DL + ++ FR DL+YRLNV + +P LR+R EDIPLLA F ++ ++ + Sbjct: 284 KDLESCIREKTFREDLYYRLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFD 343 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 A++ +M++ WPGNVREL+NV+ERAV+ G + + R ++ Sbjct: 344 EGAMKAMMAYPWPGNVRELKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGG--NTE 401 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 L P + E+ I+ L +G A LG+ TTL +M +LGI Sbjct: 402 VSGLQPLKAMVYDYEKDIIINALNRFDG---SKEMVAKTLGIDLTTLYRKMSKLGIDEE 457 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 244/482 (50%), Gaps = 30/482 (6%) Query: 189 SVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF 248 + ++ D +++ + + L T+ P + DL Sbjct: 6 RIRFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALE----TQSPDII--LADLR 59 Query: 249 LWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRI 307 + + + L + + + G A+ + + + + Sbjct: 60 MGELSGIDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFR--------- 110 Query: 308 AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 V + L ENH L E++ + + + I+ S ++D+L+ V + + Sbjct: 111 ---VEELKIILQRMAEKVRLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDT 167 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 + VLICGE+GTGKE++ARA+H +P V ++C ++ +L+ESELFGH+KGAFTGA Sbjct: 168 RTPVLICGESGTGKELVARAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGA 227 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 I G F+ A+GGT+FLDEIG+LPL+LQ KLLRVLQ++++ +G ++++ V+VRVIAAT Sbjct: 228 IKPKEGLFQAANGGTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAAT 287 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 NRDL + FR DL++RLNV + LP LR+R DIP L +HF + + R + Sbjct: 288 NRDLEAGYKTGTFRKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEV 345 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 ++A++ LM +DWPGNVRELEN IERAV L G +++ P+L + +++ Sbjct: 346 TSQAMKSLMQYDWPGNVRELENCIERAVALGNGEVIDVDDLP------PSLQAMAPKKNA 399 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 A + + ++ ER I +V + G A LG+ R TL +++R I + Sbjct: 400 PAVSEGYDSTDLEDIERTTIQRVFDQVGG---DKGLALKMLGISRATLYRKIKRYNIDIS 456 Query: 668 EV 669 Sbjct: 457 RT 458 >UniRef50_A0LLZ8 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Deltaproteobacteria RepID=A0LLZ8_SYNFM Length = 516 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 169/521 (32%), Positives = 258/521 (49%), Gaps = 32/521 (6%) Query: 162 NAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRC 221 V LD + L + + S+ + + S + + Sbjct: 12 RTVSEELDPERLQRKFLSALLDLQNVERGSIWVRRGDGYQCVEAVGSQSESIKGIAISAR 71 Query: 222 MPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPG 280 P ++ ++ T+ D ++ + + S L PL G Sbjct: 72 RP---SIVGWVIKHGSMTVAEPGKDDRHFKEVEDNIAVKS---RLILCFPLFLKSGEVYG 125 Query: 281 ALLLAHTSST----LFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSE 336 A+ L TS+ +++ +LLQH+ D A+A+ N+ + E L+Q L Sbjct: 126 AVQLIDTSAGGNRLNLNQDYLELLQHLVDIGAMALSNSLVYSDQVRENEKLKQTLEALRS 185 Query: 337 QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396 Q ++ + +S A +++ + A++D VLI GE+GTGKE+IAR IH+LS R+ Sbjct: 186 QEIA-------LGRSPAFIKVMKLAEDYARTDFPVLITGESGTGKELIAREIHRLSRRQG 238 Query: 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQ 456 P + NC+AIP +LLESELFG++KGAFTGA+ + G FE ADGGT+FLDEIGD+PL LQ Sbjct: 239 NPFLVQNCSAIPDTLLESELFGYEKGAFTGAVKSKTGIFEAADGGTIFLDEIGDMPLALQ 298 Query: 457 PKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELP 516 ++LRV+Q EI+ LG +R VNVR+I+ATN+DL + FR DLFYRLNV P+ +P Sbjct: 299 ARILRVVQYNEIKPLGENRPRSVNVRIISATNKDLNGAIAGGTFREDLFYRLNVLPIHIP 358 Query: 517 PLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVL 576 PLR+R EDIPLL HF + A + + AL + + W GN+RELEN + ++ Sbjct: 359 PLRERREDIPLLLDHFLAREALRLGVPARRLSPGALEYVCGYPWQGNIRELENFVRHIIV 418 Query: 577 LTRGNSLNLHLN-----------VRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQ 625 ++ G +++ V SR ++ S + S +E ER Sbjct: 419 VSTGETISREELALHFPSVAPSSVESSRPAQSVAPVSTGKGSPPASFSFEGYSWEELERA 478 Query: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 I+ +L + + AA G+ R+T SRM+RL I Sbjct: 479 YILYLLEKNRWHI---TRAAREAGVNRSTFDSRMKRLSIRK 516 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 159/475 (33%), Positives = 244/475 (51%), Gaps = 39/475 (8%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D ++ +L + ES + + + D + + Sbjct: 5 ILIVDDDRDIL------NLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPE 58 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 L + + + L A+L + + + + + I Sbjct: 59 LSGLEFIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINF-----EELKII 113 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A L++E ++L L + DII +S M+ +L+ +A D+T Sbjct: 114 IDQALEVSD-------LKKELNELKSLLST-----DIIAESPQMKQVLETAKKIAPFDTT 161 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+IA IH+ S R+++P + INC AIP+ LLESELFG+ KGAFTGA Sbjct: 162 VLITGESGTGKEMIANFIHKNSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTD 221 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G E A+GGTLFLDEIG+LPL+LQ KLLRVLQE EI+ +G +R ++VR IAATNRD Sbjct: 222 KKGLIEEAEGGTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRD 281 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L +MVE+ +FR DL+YR+NV P+ +PPLR+R EDI LA++F K + + Sbjct: 282 LKKMVEEGKFREDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEK 341 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A +L+++D+ GNVRELEN+IERAVL T G + + + R ++Q Sbjct: 342 AREKLLNYDYKGNVRELENIIERAVLTTEGEEIT------------DIPVTVSKRYILSQ 389 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 L P E E + +L +T+ ++ A+ G+ R + ++R GI Sbjct: 390 ELKPFKEAKKEFEESYLKNLLEKTDFNIS---KASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 150/324 (46%), Positives = 211/324 (65%), Gaps = 6/324 (1%) Query: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406 II QS ++ +L +D ++K+D+T LI GE+GTGKE++A+ IHQ S R +KP + +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466 IP+ LLESELFGH+KGAFTGA N GRFE+A+ GT+FLDEIGD+PL LQ K+LRV+QE+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526 ER+GG+R I VNVR+IAATN+DL V++ +FR DLF+RLNV P+ +PPLR+R EDIP Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586 LL ++F K + ++ I E ++ +++ WPGNVRELEN+IER +L G ++N+ Sbjct: 182 LLCEYFINKFSHKFGYSLQ-IKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINIK 240 Query: 587 LNVRQSRLLPTLNEDSALRSSMAQ--LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGA 644 + R + + + E E++ I+ L I A Sbjct: 241 DIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWI---KSRA 297 Query: 645 ATRLGMKRTTLLSRMQRLGISVRE 668 A L + RTTL+ +M+RL I E Sbjct: 298 AKYLNINRTTLIEKMKRLNIKDNE 321 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 166/476 (34%), Positives = 244/476 (51%), Gaps = 32/476 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D + + + A + L GE L ++ + DL + + Sbjct: 6 ILVVDDDRGLRTLMKARLEGAGYRVTLAE--RGEEALTAA----QEEVYSAAVLDLKMEE 59 Query: 252 RDPLLLLLASNGCESALLIPL-TFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D ++LL + L + + T GA+ + F + + A + Sbjct: 60 MDGMVLLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFE-----AKDLLYR 114 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A SL+ E +L + +II S+ M+ +L QV +A +DST Sbjct: 115 LEKALEV-------GSLRMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDST 167 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 V + GE+GTGKE+IA+ +H S R P V INC AIP LLESELFGH KGAFTGA Sbjct: 168 VCLYGESGTGKELIAKVLHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQA 227 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G + A+ GTLF+DEI +L LQ KLLRV Q+ E +GG + + V+ R++AATN+D Sbjct: 228 KKGLLQQAERGTLFMDEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQD 287 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 LW+ ++D +FR DL+YR++V P+ LPPLR+RPEDIPLLA HF Q MN+ I + Sbjct: 288 LWKAIQDGKFREDLYYRIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPD 347 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ +LM WPGNVREL NV+ERAV+L R ++ + + + S Sbjct: 348 AMHRLMLHRWPGNVRELANVVERAVVLAREGNICAEHLLLEREAV----------SDSGT 397 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 L P T DE ER ++QVL T G V+ AA + G R +++ + Sbjct: 398 ELPPLTAARDEFERAYLIQVLHSTKGNVS---RAAAKAGRYRAEFYKLLRKYDLDP 450 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 142/403 (35%), Positives = 217/403 (53%), Gaps = 16/403 (3%) Query: 267 ALLIPLTFGNHTPGALLLAHTSSTLF---SEENCQLLQHIADRIAIAVGNADAWRS-MTD 322 +P + + + + F ++ +L + I V + A + Sbjct: 180 FCELPESADDIKTEVVEINGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQ 239 Query: 323 LQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKE 382 L L ++L++ II ++ L + + +A ++TVLI GE+GTGKE Sbjct: 240 LNSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKE 299 Query: 383 VIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT-HRGRFEIADGG 441 ++A A+H S R +K+NCAAIP +L E+ELFG+ +GAFTGA G+FE+A+ G Sbjct: 300 LVAHALHVESGR-PGSFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNG 358 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 T+FLDEIGD+PL +Q KLLRVLQE+E+ERLG +T +NVRVIAATN++L ++++ ++FR Sbjct: 359 TIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFR 418 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL+YRLNV L +P LR+R ED+PLL K+F +K + + I E + M++ WP Sbjct: 419 EDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWP 478 Query: 562 GNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDE 621 GN+RELENV+ER L G + N++ L S+ L + Sbjct: 479 GNIRELENVLERCFNLVEGKVIEKKYLPPYILGEELKNKEFPLGQSLTNL-------LEA 531 Query: 622 EERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E++ I L + G AA LG+ R L R++ + Sbjct: 532 YEKELIKAALLKAKG---NKSKAANLLGISRQWLHKRLKYFNL 571 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 155/485 (31%), Positives = 244/485 (50%), Gaps = 28/485 (5%) Query: 190 VSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFL 249 +++ D +FSL + + GE L T D++L Sbjct: 3 ARVLIVDDEDGIRFSL--RGILEDEGYEVAEAETGEEGLKLATETPPDLIFL----DIWL 56 Query: 250 WQRDPLLLLLASNGCESALLIPLTF-GNHTPGALLLAHTSSTLFSEENCQLLQHIADRIA 308 D L +L +++L + + + A+ + F E+ L +++ Sbjct: 57 PGMDGLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSL-----EKVV 111 Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 I+ A + L++EN L +L + + ++ S ++ +L Q+ VA +D Sbjct: 112 ISANKALEYY-------RLRRENQALRSRLTQSTTV-EMTGNSASIVELRGQIGRVAPTD 163 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 + VLI GE GTGKE+ AR+IH S R+DKPLV +NCAAIP L+ESELFGH+KGAFTGA Sbjct: 164 AWVLITGENGTGKEIAARSIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAE 223 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 G+FE+A GTLFLDEI D+ L+ Q K+LR+LQE+ ER+GG +T+ V+VRVIAATN Sbjct: 224 TAKTGKFEMAHQGTLFLDEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATN 283 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 + L + +FR DL+YRL V PL +PPLR R +D+ LL F +M Sbjct: 284 KSLEDEIAAGRFREDLYYRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFA 343 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR-----LLPTLNEDSA 603 +A L+ + WPGNVREL+N +ER +++ G ++ + + R ++P Sbjct: 344 PDACSALLCYHWPGNVRELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGP 403 Query: 604 LRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLG 663 + + + E + + L+E G + A +G++R+ L +++ Sbjct: 404 SDGMIPEGVMDFKAARTAFEARFLEAKLQEFGGNI---TRLAEAIGLERSYLYRKLKSYN 460 Query: 664 ISVRE 668 I E Sbjct: 461 IQTPE 465 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 168/471 (35%), Positives = 246/471 (52%), Gaps = 23/471 (4%) Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPT-------LTHRADDLFLWQRDP 254 + D A C + R + GE L+ ++ + DL L D Sbjct: 1 MEKILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDG 60 Query: 255 LLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGN 313 + +L + + LL+ + G A+ + + ++ + AD + + V Sbjct: 61 IEVLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFK-----ADALRLIVKL 115 Query: 314 ADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373 A ++L++E +L G II +S+A +++ QV +A+ STVLI Sbjct: 116 ALK-------TQTLKREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLI 168 Query: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433 GE+GTGKEV+ARAIH LS R+++ + INCA+IPA LLESELFGH+KGAFTGA +G Sbjct: 169 TGESGTGKEVVARAIHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKG 228 Query: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493 FE A GT+FLDEIG++ + +Q KLLRVLQER I R+G + I ++ RVIAATNR+L + Sbjct: 229 LFEEAHHGTIFLDEIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAK 288 Query: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553 +E++ FR DLFYRLNVFP+ +PPLR+RP DI LA +F +R R + EA + Sbjct: 289 RIEEKSFREDLFYRLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQ 348 Query: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLH 613 + + WPGNVREL NVIER ++ G +L ++ R A Sbjct: 349 LMAQYAWPGNVRELRNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADL 408 Query: 614 PTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E+ I Q L++T V A L + R TL +M++ G+ Sbjct: 409 GLEEAVSAIEKSLIQQALQKTGWNVL---QTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 Length = 1673 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 171/538 (31%), Positives = 259/538 (48%), Gaps = 46/538 (8%) Query: 157 LVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN-----EKFSLWCSDLS 211 L+++ + S LD ++++ G ++L + + Sbjct: 1156 LLEVNRRLSSTLDAEEVLRLAMDAAIELTGAERGFVILASPSPEPGGHAKGRLEVAVARN 1215 Query: 212 ASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIP 271 + + + ++ + LT A + + + L S + +P Sbjct: 1216 LDRERVGKSQLKFSHGIAKRVVERGEAVLTVDALADERFHGNASVHGLR---LRSIVCVP 1272 Query: 272 LTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQE 330 + GA+ L + F+E + LL AD+IA+A+ N + D +L++E Sbjct: 1273 IRAHGAVLGAVYLDNRFQRGKFAEGDADLLGAFADQIAVALHNGRLMAELRDRTRALEEE 1332 Query: 331 NHQL-------------------SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 ++ + + +I +S M +L + VA+SD TV Sbjct: 1333 QRRVAELMRSQADEIERLSHELERTRADARRDFPEIAGRSAPMRAVLALCERVAESDVTV 1392 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTH 431 + GE+GTGKE++ARAIH PRRD P V +NCAA+P +LLESELFGH KGAFTGA+ H Sbjct: 1393 TVTGESGTGKELVARAIHAGGPRRDGPFVAVNCAALPEALLESELFGHVKGAFTGAVRDH 1452 Query: 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPV-NVRVIAATNRD 490 G F A GGTLFLDE+G++PL +Q KLLR LQER I +G R++ V +VRV+ ATNRD Sbjct: 1453 GGLFLSARGGTLFLDELGEVPLGVQAKLLRALQERSIRPVGSDRSVSVADVRVVCATNRD 1512 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L V +FR DL+YR++V + LPPLRDRPEDIP +A+ +K+A R + Sbjct: 1513 LRDEVARGRFREDLYYRVSVIEIRLPPLRDRPEDIPAIAQAIVEKLAARQGRPAFRLSRG 1572 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 ALR+L S+ WPGNVR+LENV+ RA +L+ G + + A Sbjct: 1573 ALRRLSSYGWPGNVRQLENVLSRACVLSPGPEIGAADIQLPAAAPAPRGRSRAEHQGA-- 1630 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 E +RI L + V+ + LG+ R TL ++ R G+ +E Sbjct: 1631 ------------EEERIRAALDLSRWNVS---EVSRSLGIPRMTLYRKLARYGLLRKE 1673 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 138/357 (38%), Positives = 211/357 (59%), Gaps = 16/357 (4%) Query: 312 GNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTV 371 ++ + +++ ++ Q E ++ +II +S + AK++S V Sbjct: 225 ELDLLYKKIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNV 284 Query: 372 LICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN-T 430 LI GE+GTGKE+ A AIH S R +K+NCAAIP LLESELFG++ GAFTGA Sbjct: 285 LIRGESGTGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEG 344 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G+FE+ADGGT+FLDEIGD+PL +Q KLLRVLQERE+ER+G +R+ ++VRVI+ATNRD Sbjct: 345 KIGKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRD 404 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L +M+++ +FR DL+YRLNV + +PPLR+R EDI +L+++ +K+++ + + + E Sbjct: 405 LEKMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKE 464 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTR-GNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 A+ LM++ W G VR+LEN+IERAV L + + EDS Sbjct: 465 AMSCLMNYKWEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDS------- 517 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISV 666 ++ E+ I++ L N AA +L + RT+L ++ + I++ Sbjct: 518 ----DLNKLINQVEKDIILETLIYCNW---NKTLAAKKLNISRTSLYEKIAKHNIAI 567 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 156/475 (32%), Positives = 238/475 (50%), Gaps = 39/475 (8%) Query: 188 ASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDL 247 +++ D + + + L + + + + + D+ Sbjct: 17 EKPVVLVADDEPSIRELVQTVLS----QQSLEVVTASDGEEALKVSEAQ--VVDCALVDI 70 Query: 248 FLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRI 307 + + D L +L ++ +I +T + + + F + + +A+++ Sbjct: 71 RMPKVDGLAVLEQLV-LKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDI-DDLAEKV 128 Query: 308 AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 A+ + + S ++ S AM+++ + + VA + Sbjct: 129 RKALDYSKTTEVLPIK---------------GSKETSSLMVGMSAAMQEVYKLIGRVAST 173 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 D TVLI GE+GTGKE+++RAIH SPR P V +NCAAIP LLESELFG++KGAFTGA Sbjct: 174 DVTVLITGESGTGKELVSRAIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGA 233 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 G+FE+A+ GT+ LDEIGD+ LQ K+LRVLQE IER+GG+R+IPV+VRV+AAT Sbjct: 234 DERKIGKFELANHGTILLDEIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAAT 293 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 N+DL +V+ FR DL++RLNV ++LPPLR+R EDIPLLA HF +K A ++ + + Sbjct: 294 NKDLQSLVKSGSFREDLYFRLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGV 353 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSS 607 E + LM++D+PGNVRELEN+I RAV L G L L + Q Sbjct: 354 TPEVMAALMAYDYPGNVRELENIIARAVALCSGKVLTLDVLPPQVVEP------------ 401 Query: 608 MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 L P E ER+ Q + P+ A L + R++ Sbjct: 402 -KPALRPLKEVLLEAERRAFRQAVAVAG---LDPQAVADLLQVDLDYAKKRLKEW 452 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 240/475 (50%), Gaps = 32/475 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D K +L + V + ++ ++ + D+ + + Sbjct: 4 VLVIDDEKITLKNLEHVLKKEGYDVTGT----DSGVEALKLIEKQEFDIV--LTDIKMEK 57 Query: 252 RDPLLLLLASNGCESALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D +L + + G A+ + + + +L D I Sbjct: 58 VDGFEILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKL-----DIIRKI 112 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A + + L+Q+ + +II Q+ M LL+ +A +D Sbjct: 113 ILEASEKVKLKKEVKQLRQQLDFHEKV--------NIITQNSKMLKLLEIARQIAPTDCN 164 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE+ AR IH S R+ P + +NC A LL +ELFGH+KGAFTGA Sbjct: 165 VLITGESGTGKELFARYIHLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANAL 224 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G E+A G+LFLDEI ++ L +Q KLLRV+QERE RLG + I V+VR IAATNRD Sbjct: 225 KKGLIEMASSGSLFLDEITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRD 284 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 + + V++ +FR DL+YRLNV +E+PPLR+R +DIPLL +F++K + M + I + E Sbjct: 285 IKEEVKNGKFREDLYYRLNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEE 344 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 A+ L+++++PGNVRELEN+IERAV+L + +++ + + L + + Sbjct: 345 AINLLVNYEYPGNVRELENIIERAVVLCNSSQIDVEHLPQDLKEL---------KIEVFT 395 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 +E E++ I +LRE AA LG+ R +L +++ GI Sbjct: 396 KKEGKFMSLEELEKEYIKWILREVGN---NKTVAAQILGIDRVSLWRKLKNYGIE 447 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 166/476 (34%), Positives = 238/476 (50%), Gaps = 30/476 (6%) Query: 191 SMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLW 250 ++++ + ++ + + + + GE L + RQ DL L Sbjct: 5 TILIVEDD--QRMNQALLHILSKKGYAVESVDSGEKALE----RIRQTRFDLVVSDLKLP 58 Query: 251 QRDPLLLLLASNGC-ESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAI 309 D + +L A + L + +T A+ + + + + Sbjct: 59 GMDGMEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDM---------- 108 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 T + L +N +L +QL +I+ S++M + + ++ V +S S Sbjct: 109 --EELRLVVEKTLEKRGLFLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRS 166 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GETGTGKE++ARAIH S R KP + +NCAA+ L+ SELFGH KGAFTGA+ Sbjct: 167 TVLIRGETGTGKELVARAIHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVA 226 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 RG FE ADGGTLFLDEIGD+ LQ LR L++ EI+ +G + V+VR+IAATN+ Sbjct: 227 DKRGLFEAADGGTLFLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNK 286 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 +L MVE FR DL+YRLNV ++LPPLR R EDI LLA HF K A N+ I I Sbjct: 287 NLEAMVEQGGFRKDLYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAP 346 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMA 609 ALR L ++ WPGNVRELEN+IERA L + + T+ + S Sbjct: 347 RALRLLENYSWPGNVRELENIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETT 406 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + R+ IV++L TN A+ LG+ R+TL M RL ++ Sbjct: 407 --------SLEAVSRRHIVRILEMTN---HNKTQASKLLGIDRSTLWRIMNRLKLN 451 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 155/496 (31%), Positives = 243/496 (48%), Gaps = 48/496 (9%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D N + ++ + + + + + D+ + Sbjct: 8 ILIVDDDDNMREAML------ETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMPN 61 Query: 252 RDPLLLL--LASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAI 309 D + ++ + S G + L +T A+ + + + + I Sbjct: 62 VDGMTMMNMIQSAGITTPLCF-VTAFGTVNNAVDALKLGAYDYILKPFA-----PEVIEE 115 Query: 310 AVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDS 369 V + ++N I++S M L VA S++ Sbjct: 116 LVRRVLEIEETAPAVKR--KKNTA--------------IFRSAFMAQLFSLARDVAASEA 159 Query: 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN 429 TVLI GE+GTGKEV AR IH+ S R V +NCAA+P +L+ESELFG++KGAFTGA+N Sbjct: 160 TVLITGESGTGKEVFARYIHENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVN 219 Query: 430 THRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489 G+FE+ADGGT+ LDE+G++PL LQ KLLRVLQE+E+ERLGG++ +NVR++A TN+ Sbjct: 220 RKPGKFELADGGTILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNK 279 Query: 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPT 549 L + V++ FR DL+YRLNV +ELPPLR+R EDI LA F +K A+ + + Sbjct: 280 VLKKEVDEGNFREDLYYRLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTD 339 Query: 550 EALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNV------------RQSRLLPT 597 +A++ L+ +DWPGNVRELE+ IERAV+L R ++ +Q Sbjct: 340 DAVKALLDYDWPGNVRELEHTIERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAAD 399 Query: 598 LNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS 657 E ER+ I++ L+ET G AA LG+ TL + Sbjct: 400 SYTGCETTEDSVSAGIDFAGTIAEMERELIIKTLKETGG---NRTKAADMLGITVRTLRN 456 Query: 658 RMQRL---GISVREVL 670 ++ G+++ +++ Sbjct: 457 KLNEYKENGLNIEDII 472 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 168/481 (34%), Positives = 245/481 (50%), Gaps = 38/481 (7%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 ++ D + L S A + R + + + +Q DL + + Sbjct: 8 ILAVDDEPSMLRLLEISLRQAGYQPLTAR----DGREALEVINAQQVDCV--VTDLHMPR 61 Query: 252 RDPLLLLLASNGCESALLIPLTFGNHTPG-ALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D L LL ++ L + + G A+ ++ + L + +A Sbjct: 62 MDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDL-----AELELA 116 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 + A ++ L EN L E +I S AM+ L + + VA +T Sbjct: 117 IKRALSF-------SRLVVENRFLRE---DKADTTGLIGNSPAMQHLAESIRQVAPEKAT 166 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VL+ GETGTGKE++ARAIH SPR + V +NCAAIP +LESELFGH+KGAFTGA+ Sbjct: 167 VLVAGETGTGKELVARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKE 226 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G+FE+ADGGTLFLDE+ ++P++LQ KLLR LQE IERLGG+R I V++RV+AATNR+ Sbjct: 227 RIGKFELADGGTLFLDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRN 286 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 ++D + R DL+YRLNVF ++LP L+ R DI LLA HF + I + Sbjct: 287 PRDAIKDGKLREDLYYRLNVFRIDLPALKARKSDIELLATHFLA-------KRRVDISAQ 339 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLL------PTLNEDSAL 604 A++ LM +DWPGNVRELENV+ERA +++ + + T +A Sbjct: 340 AVQVLMQYDWPGNVRELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNAD 399 Query: 605 RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + Q ++ ERQ I + L +TNG AA L + +L ++ + GI Sbjct: 400 TAEAPQNPLCLPNAVEQLERQLIAKALAQTNG---NKSKAAKLLEISERSLWYKLSQYGI 456 Query: 665 S 665 S Sbjct: 457 S 457 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 167/474 (35%), Positives = 243/474 (51%), Gaps = 33/474 (6%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ D + + + S A L + + + + L DL + Q Sbjct: 6 ILIVDDDLRMRQLIRDTLASEGINAVL----CSDGAEAAEMVLRQTTDLI--ITDLMMPQ 59 Query: 252 RDPLLLL-LASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + LL LA L++ +T A+ + + ++ + D++ + Sbjct: 60 IDGMELLNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFE-----PDQLLLV 114 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 V A + LQ EN QL +Q+ +++ S+ M L + +A D+T Sbjct: 115 VQRALV-------RLRLQDENRQLRQQVAGCQA-DELLGASKQMTTLKALITRIAPFDTT 166 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GETGTGKE+ AR IH+LS RRD+ + INC A+P +LLESELFGH +GAFTGA Sbjct: 167 VLIQGETGTGKELAARMIHRLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKD 226 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 +G E AD GTLFLDEI Q KLLRVLQE R+G V++RVIAA+N Sbjct: 227 KKGLLESADHGTLFLDEINTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTT 286 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + V+ +FRSDLFYRLNV + LPPLR+R DI LLA +F + AR + +I E Sbjct: 287 LEKEVQTGRFRSDLFYRLNVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPE 346 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 AL+ L ++ WPGNVRELEN+IERAV++ GN L R S + ++ Sbjct: 347 ALQSLRNYHWPGNVRELENIIERAVIMADGNELQPQYLPRF----------SVSDTPLSS 396 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 E ER+ I++VL+ T G A+ LG+ +L ++++ G+ Sbjct: 397 SSDQELLPMAEVERRHIIRVLKATAGH---RGKASKLLGISLASLWRKVKQYGL 447 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 164/512 (32%), Positives = 241/512 (47%), Gaps = 54/512 (10%) Query: 189 SVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF 248 +++ D +FSL + + GE L +T D++ Sbjct: 2 HARILIIDDEDGIRFSL--RGILEDEGFEVLEAPSGEDGLALLARETPDLVFL----DIW 55 Query: 249 LWQRDPLLLLLASNGCESALLIPLTF-GNHTPGALLLAHTSSTLFSEENCQLLQHIADRI 307 + D L +L + L + + A+ + F E+ L +++ Sbjct: 56 MPGMDGLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSL-----EKV 110 Query: 308 AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKS 367 IA A + L++EN L + L + ++ +S ME L Q+ VA + Sbjct: 111 LIAAQRALEYGD-------LRRENEALRDSLPTAHA-DEMNGRSPVMETLRGQIARVAPT 162 Query: 368 DSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA 427 D+ VLI GE GTGKE+ ARAIH S R D+PLV +NCAAIP L+ESELFGH+KGAFTGA Sbjct: 163 DAWVLITGENGTGKELAARAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGA 222 Query: 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAAT 487 + G+FE+A GTLFLDEIGD+ L+ Q K+LR+LQE++ ER+GG RT+ V+VRVIAAT Sbjct: 223 DSAKAGKFEMAHKGTLFLDEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAAT 282 Query: 488 NRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAI 547 N++L + FR DL+YRL VFPL LPPLR+R D+PLL F Q++AR Sbjct: 283 NKNLEDEIAAGTFREDLYYRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATF 342 Query: 548 PTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS----- 602 +A L + WPGNVREL N +ER ++L G + + + + Sbjct: 343 APDAQEALARYPWPGNVRELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAA 402 Query: 603 --------------------------ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNG 636 +++ E Q + L E G Sbjct: 403 TAAGGRAASGTGGATGQGGDPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGG 462 Query: 637 IVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668 V A +G++R+ L +++ I + Sbjct: 463 NV---TRLAEAVGIERSHLYRKLKGYNIQTTD 491 >UniRef50_A9GA77 Protein kinase n=15 Tax=Bacteria RepID=A9GA77_SORC5 Length = 1739 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 167/564 (29%), Positives = 254/564 (45%), Gaps = 46/564 (8%) Query: 126 IITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFF 185 Q + A + L+ + + S +++ D++A Sbjct: 1170 PRRRAAQPARTPAAAEAAAPPAAERTAKLERLLAVFRRLNSSVEIADILAMAMDAAIDLT 1229 Query: 186 GLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRAD 245 +++ + + + + + + T++P +T A Sbjct: 1230 AAERGFLLI---EQPGGELRVAVARNVDREKVGRSHLKFSYGIAERAIATQEPVVTVDAQ 1286 Query: 246 DLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHT-SSTLFSEENCQLLQHIA 304 + + + + S + +P+ + GAL L + F+ E+ LL A Sbjct: 1287 EDPRFHEHASVHAMR---LRSVIAVPIRSPDGVLGALYLDNRFRRARFAPEDVDLLLAFA 1343 Query: 305 DRIAIAVGNADAWRSMTDLQESLQQENHQL---------------------SEQLLSNLG 343 D++A+A+ NA + L+ E ++ + L Sbjct: 1344 DQVALALRNARLVDDLRRRTVELEAERRRVEELLRGQAAEIDRLQEQVLVRQQALEHRYD 1403 Query: 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403 G I+ + A+ + +D V + VL+ GE+GTGKE++ARAIH PR+ P + IN Sbjct: 1404 YGAIVGRGPALRAVFATLDRVVDAPVNVLVTGESGTGKELVARAIHFAGPRKSGPFMGIN 1463 Query: 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL 463 CAA+PA+LLESELFGH +GAFTGA G A GGTLFLDE+G++PLE+Q KLLRVL Sbjct: 1464 CAALPAALLESELFGHVRGAFTGADRDRTGLVVAARGGTLFLDELGEMPLEVQAKLLRVL 1523 Query: 464 QEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPE 523 QERE+ +G + + V+ R++ ATNRDL +FR DL+YR+ V + LP LRDR E Sbjct: 1524 QEREVRPVGSAEAVRVDFRLVCATNRDLLAEAARGRFREDLYYRVAVVQIRLPALRDRLE 1583 Query: 524 DIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL 583 D+P LA HF ++ A + R + EALR+L WPGNVRELENVI +AV+L G + Sbjct: 1584 DLPELALHFVRRAAEQLGRPAPQLSHEALRRLGQHGWPGNVRELENVITKAVVLCDGRRI 1643 Query: 584 NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG 643 LP E + ER ++ L T Sbjct: 1644 GPDDV-----DLPRAQEGGGRGAPRPPRD----------ERAALLAALERTGW---NALQ 1685 Query: 644 AATRLGMKRTTLLSRMQRLGISVR 667 AA GM R T +++RLGI Sbjct: 1686 AAREAGMSRATFYRKLRRLGIERP 1709 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 168/525 (32%), Positives = 246/525 (46%), Gaps = 46/525 (8%) Query: 142 VALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNE 201 + L L + + L++ V I +V+ D + Sbjct: 117 MVTTLFRHSEQDLTDLEHTAKELETVKALNETFDTVLNIIRD-------GIVVVDEKGKI 169 Query: 202 KFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLAS 261 + P ++ + L T + ++ + PL++ + Sbjct: 170 TLVNQAMADFLTLPPEEMIGKPIAEIMSSNQLHHVACTGLSQTSEVLTIRGKPLIVSNS- 228 Query: 262 NGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 P+ G GA+ + + +A A A+ R + Sbjct: 229 ---------PIIKGGKVVGAVG-----------------KAVFPHLAEAQELAEKVRCLE 262 Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 Q+E L + + + D++ +S M+ L ++ IVA S STVLI GE+GTGK Sbjct: 263 HKVTFFQEE---LQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGK 319 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAIN-THRGRFEIADG 440 E +A AIH S R P +K+NCA+IP SL+ESE+FG+ GAFTGA GR E ADG Sbjct: 320 EGVAHAIHLGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADG 379 Query: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 GTLFLDEIG++PL LQ KLLRVLQ+REIERLG + TI VN+R++AATN+ L + +F Sbjct: 380 GTLFLDEIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEF 439 Query: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDW 560 R DL+YRLNV L LPPLR+R EDI L F K + + I A+ L+ + W Sbjct: 440 RQDLYYRLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSW 499 Query: 561 PGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPEND 620 PGN+RELENV+ERAV TR + L Q ++ ++AL M + Sbjct: 500 PGNIRELENVVERAVNYTRSGLIELIHLPHQI-----ISGNTALGQVMNKKTIRHQDRLG 554 Query: 621 EEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + ER I L + G AA L + R+ L ++ + ++ Sbjct: 555 QIERDMIAAALEKAGG---NKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_C9NV48 Sigma-54 dependent transcriptional regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NV48_9VIBR Length = 545 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 168/543 (30%), Positives = 256/543 (47%), Gaps = 31/543 (5%) Query: 149 KDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCS 208 D L+ I+ ++ L + V + + D Sbjct: 5 NQNDLSNALLAISQSLADRTQLAQTLDAVLTAARQMTFSKHGIIYVLDQTGQALIPSIVH 64 Query: 209 DLSASHCACLPRCMPGESV----LLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGC 264 + + + + E +Q + L + + + + + G Sbjct: 65 HNEQALTSHPWQPLSFEQTSQTDPFNYAIQNGEVVLINELYQYNGYDCEAVYETELALGI 124 Query: 265 ES--ALLIPLTFG-NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV---GNADAWR 318 +S L PL T G L L S A+ I AV + Sbjct: 125 KSANLLAWPLVDDSGKTIGLLALFDLSVIDNESALTAFCNMAANSIRQAVWLEEYGHMIK 184 Query: 319 SMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378 S++ +L +EN L ++ S+ I +S+ M ++L++++ V VL+ GETG Sbjct: 185 SLSADNAALVRENQHLKQRKQSHYKGP--IAESEQMLEVLRRLEKVLTLPVDVLLRGETG 242 Query: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438 GKEVIA+ IH+ S R D+PL+ NCAAIP LLESELFGH KG+FTGA G FE A Sbjct: 243 AGKEVIAKYIHENSNRADQPLIVQNCAAIPEQLLESELFGHKKGSFTGADKDKIGLFEAA 302 Query: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 GGTLFLDEIGD+PL LQ KLLRVLQER++ +G S+ + V+VRV+AAT+ L +++ Sbjct: 303 HGGTLFLDEIGDMPLLLQAKLLRVLQERKVRPVGASKEVEVDVRVVAATHCHLMDKIKNG 362 Query: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR-AIDAIPTEALRQLMS 557 +FR+DLFYRLNVFP+ LPPLR+R DI LA+HF ++ A ++ +QL Sbjct: 363 EFRADLFYRLNVFPITLPPLREREADILPLAEHFVKQSASNLGLSQAPGFSANVQKQLQE 422 Query: 558 WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSAL------------- 604 + +PGNVREL+N++ERA+LL+ +++ + L A+ Sbjct: 423 YSYPGNVRELKNIVERALLLSDFETISQIEFGEAAALAEAHQTTPAMVEVMQQPVVESVQ 482 Query: 605 --RSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + A E E+ I+ L +N + + AA +L + +TL +M++ Sbjct: 483 QDAAEQADYSRGLKEAVGEYEKTVILDCLNASNWQI---KRAAEQLSLPVSTLSHKMKKY 539 Query: 663 GIS 665 IS Sbjct: 540 DIS 542 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 154/359 (42%), Positives = 229/359 (63%), Gaps = 6/359 (1%) Query: 309 IAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSD 368 + + N + D L + L +++ DI+ + M+++L V VA +D Sbjct: 263 LILRNIEDRLEAEDQISFLTNQTQYLEDEIKELTSGYDIVAEDPKMQNVLSLVKHVAPTD 322 Query: 369 STVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI 428 +TVLI GETGTGKE+++RAIH+ S R DKPL++INC AIP +L+ESELFGH KGAFTGA Sbjct: 323 ATVLINGETGTGKELVSRAIHEASNRSDKPLIRINCGAIPTNLIESELFGHKKGAFTGAT 382 Query: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 + +GRF +AD GT+FLDEIG++P+ELQPKLLRV+QE E + +G S TI VNVR+IAAT+ Sbjct: 383 SDRKGRFLLADKGTIFLDEIGEMPIELQPKLLRVIQEGEFDPVGSSETIKVNVRIIAATH 442 Query: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 RDL Q D +FR DL+YRLNVFP+E+P LR R ED+ L+A ++ +N+ + + Sbjct: 443 RDLLQHAADGKFREDLYYRLNVFPIEVPALRHRAEDVCLIAGEMINHFSKKLNKPMVELS 502 Query: 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSM 608 LM + WPGNVREL+N+IERA+++++ ++N+ + P + D Sbjct: 503 DIDKSHLMDYHWPGNVRELQNLIERAIIISKSGTINIKDVI------PKMQSDEEHPPKT 556 Query: 609 AQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 + T+ E + E++ I++ L++T ++G GAA L + TTL S+++ LG+ Sbjct: 557 LKDKVYTSQELLKLEKENILKALKQTRWKISGKNGAAELLQLPATTLASKIKVLGLERP 615 >UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4F1_9PLAN Length = 533 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 182/516 (35%), Positives = 282/516 (54%), Gaps = 7/516 (1%) Query: 156 VLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHC 215 +L+ + H++L + + +A + ++ + ++ +L +L+ + Sbjct: 7 LLLAVWRETCRHIELGEAMERIAPLLAPAIPAQAMLVRHVAVDRSVMETLAAVELAGTEQ 66 Query: 216 ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFG 275 A +PR VL + H A D+ + L LL + +PL Sbjct: 67 AAMPRSEMAPEVLDGMLAWWHLRRVRHAAADVII---RELPALLPPETSGDVIAVPLACE 123 Query: 276 NHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLS 335 + ++L +F+E + QL +A+ +A+AV N + + L+E ++ EN +L Sbjct: 124 HGLFAVMILVSRKGVVFTEGHQQLALALAEPLAVAVENDRRLKELVALREKVEAENRRLL 183 Query: 336 EQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395 +L + I+ + +++++ +VA++D VL+ GETG+GKEVIARA+H+ S R Sbjct: 184 SKLGRSDLSETIVGSESGLREVMERATLVARADVPVLLLGETGSGKEVIARAVHRGSRRA 243 Query: 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLEL 455 + P +++NC AIPA L++SELFGH+KG+FTGA +G FE ADGGTLFLDE G+L Sbjct: 244 EGPFLRVNCGAIPAELVDSELFGHEKGSFTGASAIRKGWFERADGGTLFLDECGELTPAA 303 Query: 456 QPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515 Q +LLRVLQ+ ER+GG + + V+VRVIAAT+R+L MV + FR DL+YRL VFP+ L Sbjct: 304 QVRLLRVLQDGTFERVGGEKQLHVDVRVIAATHRNLQGMVREGTFREDLWYRLAVFPVHL 363 Query: 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV 575 PPLRDR EDIP +A HF + A E + L+++ WPGN REL V+ERA Sbjct: 364 PPLRDRREDIPAMAIHFAARAAARYGLRPCNPTEEDMHLLLNYSWPGNARELGAVMERAA 423 Query: 576 LLTRGNSLNLHLNVRQSRLLPTLNEDSALR----SSMAQLLHPTTPENDEEERQRIVQVL 631 +L G+SL++ + LP A R + + T DE R+ I L Sbjct: 424 ILGNGHSLDVATALGNVPALPAATSPPAQRAPAAVASSSASRETVVTLDEANRRHIQSAL 483 Query: 632 RETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVR 667 T+G + G RGAA LG+ TL +RM++LGI+ + Sbjct: 484 AATDGQIEGHRGAAKILGINPHTLRARMRKLGIAWQ 519 >UniRef50_A7JYI2 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=A7JYI2_VIBSE Length = 543 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 167/535 (31%), Positives = 252/535 (47%), Gaps = 29/535 (5%) Query: 155 RVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASH 214 L+ I+ ++ L + V + + D + Sbjct: 11 NALLAISQSLADRSQLTQTLDAVLTAARQMTLAKHGIIYVLDQTGQALIPSTAHHNDKTI 70 Query: 215 C----ACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCES--AL 268 L E+ ++ + L + + + + + G +S L Sbjct: 71 VSHPWEALQLDSASENDPFNFAIRNGEVVLINELYKYNGYDCESIYQTEQTLGLKSENLL 130 Query: 269 LIPLT-FGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV---GNADAWRSMTDLQ 324 PL + T G L+L + + + A I AV +++ Sbjct: 131 AWPLIDSESKTIGLLVLLDLNVIDNEAALTEFCRMAASNIRQAVWLEQYGQVIKNLNADN 190 Query: 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 ++L +EN QL ++ I +S+ M ++L ++D V VL+ GETG GKEVI Sbjct: 191 QALVRENTQLKKRTQKAYQGP--IAESEEMLNVLNRLDKVLSLPVDVLLRGETGAGKEVI 248 Query: 385 ARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLF 444 A+ IH+ S R ++PL+ NCAAIP LLESELFGH KG+FTGA G FE A+GGTLF Sbjct: 249 AKYIHENSNRSEQPLIVQNCAAIPEQLLESELFGHKKGSFTGADKDKVGLFEAANGGTLF 308 Query: 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDL 504 LDEIGD+P+ LQ KLLRVLQER++ +G S+ I V+VRVIAAT+ +L Q + D FR+DL Sbjct: 309 LDEIGDMPMLLQAKLLRVLQERKVRPIGTSKEIEVDVRVIAATHCNLMQQIRDGGFRADL 368 Query: 505 FYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRA-IDAIPTEALRQLMSWDWPGN 563 FYRLNVFP+ LPPLR R DI LA+HF Q + + +QL+++ +PGN Sbjct: 369 FYRLNVFPITLPPLRARKSDIIPLAEHFVQHTTNTLGLPQAPGLSANVRKQLLAYQYPGN 428 Query: 564 VRELENVIERAVLLTRGNSLN-------------LHLNVRQSRLLPTLNEDSALRSSMAQ 610 VREL+N+IER+VLL+ ++ S + ++ + Sbjct: 429 VRELKNIIERSVLLSDFETITHIEFGEQIPESVPSIDMKAASPTPEQPAYEQQAQADLED 488 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665 + + ER I+ L N + AA +L + +TL +M++ IS Sbjct: 489 VSKSLKDVVSQYERTVIIDCLNACNWHT---KKAAEQLALPMSTLNHKMKKYDIS 540 >UniRef50_A6CG13 Ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG13_9PLAN Length = 604 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 145/444 (32%), Positives = 222/444 (50%), Gaps = 7/444 (1%) Query: 143 ALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEK 202 + R ++ L + + + +L V + +++ D + + Sbjct: 167 SDRDRDRTSRELGRLYRLALDMGNVQSEQELSQIVLNGLFEGTSADIGAILYFDPAQQQP 226 Query: 203 FSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASN 262 + A L L H D L + + Sbjct: 227 RKPEHLKVIAFQSVDELPYQKPSHFLSEMVFDEGDAILAHNIADDSKLSTRDSLGKIHA- 285 Query: 263 GCESALLIPLTFGNHTPGALLLAHTSST-LFSEENCQLLQHIADRIAIAVGNADAWRSMT 321 +S + PL G + L T+ ++ + +AD++AI+ N ++ Sbjct: 286 --QSVICAPLRNKRGVAGLIHLYSTNPDNPLDSDDLEFTLALADQLAISFQNLSEKLRLS 343 Query: 322 DLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGK 381 D ++ EN L EQL +++ +S +M + Q+ +A +D++VLI GE+G GK Sbjct: 344 DGLARMEGENKALREQLELE---SELVGKSPSMTAMKAQILRIAPTDASVLIRGESGVGK 400 Query: 382 EVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441 E++ARAIH S R+ +P V +NCAA+ LLESELFGH+KGAFTGA G+FE A G Sbjct: 401 ELVARAIHFNSQRKKQPFVCMNCAALSEGLLESELFGHEKGAFTGATGQKPGKFEQAHKG 460 Query: 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFR 501 TLFLDE+G++ L +Q K LRVL+ ER+GGS +I V+VRV+AATNRD+ + V FR Sbjct: 461 TLFLDEVGEMSLGVQAKFLRVLEGHSFERVGGSVSINVDVRVVAATNRDMEKAVAKGIFR 520 Query: 502 SDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWP 561 DL++RL+V + + PLR R +DI LLA +F + R I EA L ++ WP Sbjct: 521 QDLYFRLHVVEVSVDPLRVRADDILLLADYFLNRFVVKTGRPIRGFTEEAKELLEAYHWP 580 Query: 562 GNVRELENVIERAVLLTRGNSLNL 585 GNVREL+N IERA +L G+ ++ Sbjct: 581 GNVRELQNTIERAFILCTGDVIDA 604 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 153/489 (31%), Positives = 245/489 (50%), Gaps = 25/489 (5%) Query: 181 IHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTL 240 + V +++ D +L + + G + T + Sbjct: 1 MADGTDTKPVRVLVVDDEPTLLRALEALLGQKGYS------VVGLDSPIVATQRLAHEDF 54 Query: 241 THRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN-HTPGALLLAHTSSTLFSEENCQL 299 D+ + Q L LL A + + + G+ AL + + + + + Sbjct: 55 DVALLDIKMPQLSGLELLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFED 114 Query: 300 LQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQ 359 ++ +A +A A + L+ L++ ++ S + ++++ Sbjct: 115 VELVARAVAKAAERKMLFDRNRRLETQLRE---------KEGGAPEGLVGNSAPIREVVR 165 Query: 360 QVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGH 419 ++ VA S +TVL+ GE+GTGKE++ARA+H SPRR +P V +NC A+ +LLESELFGH Sbjct: 166 MIEAVAYSATTVLVTGESGTGKELVARALHARSPRRAQPFVALNCGALTETLLESELFGH 225 Query: 420 DKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPV 479 KGAFTGA +G F+ ADGGT+FLDEIGD+P Q +LLRVLQE E++R+G + ++ V Sbjct: 226 VKGAFTGAQRDQKGLFDAADGGTIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRV 285 Query: 480 NVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARH 539 +VRVIAAT+RDL ++V+ +FR DLFYRLNV + LP LRDR +D+PLLA HF ++ A Sbjct: 286 DVRVIAATHRDLPRLVKAGKFREDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAER 345 Query: 540 MNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLN 599 + + + A+ +A+ L + WPGNVRELEN IERAV+L RG ++ Sbjct: 346 LGKRVRALAPDAIELLCGYRWPGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPL 405 Query: 600 EDSALRSSMAQL------LHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 A + E+ + ++R + ++ AA + GM R+ Sbjct: 406 VREAPAGGDEAVWLTMSYATAKEQSLRRFEKGYVETLMRHCDNNIS---AAARKAGMDRS 462 Query: 654 TLLSRMQRL 662 +++ Sbjct: 463 NFKRVLRKY 471 >UniRef50_Q2LPT8 Transcriptional regulator, sigma-54-dependent n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LPT8_SYNAS Length = 645 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 171/480 (35%), Positives = 259/480 (53%), Gaps = 9/480 (1%) Query: 194 LGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRD 253 L D ++ W D+ + + T + L D + Sbjct: 172 LADAQRIAHLGCWDWDIVTGELFWSDEVYRIFGLRPQEFGATYEDFLARIHPDDRRTVEE 231 Query: 254 PLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRI---AIA 310 + L LA G ++ + + + + + +++ + I Sbjct: 232 RVNLSLADPGIPYSVSHRILLPDGAECKVFEKGEVTFDGFGKPVRMIGTVHPLIMRKQTE 291 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 A+ + L+E L+ EN L E++ G G+II S+A+++ + + VA++ T Sbjct: 292 EELIRAYEEIQALKEKLEAENTYLREEVGLQHGAGEIIGDSEAIKNTMHRALQVARTSVT 351 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VL+ GETGTGK + A +HQ S R DKP V +NCA +P +L+ESELFG +KGAFTG+ Sbjct: 352 VLLTGETGTGKGIFAHFLHQNSGRADKPFVHVNCAGLPHNLIESELFGREKGAFTGSTAR 411 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 GRFE+A GGT+FLDEIG+LPLELQ KLLRV+++ + ERLG +I V+ R+I +TNR+ Sbjct: 412 QIGRFELAHGGTIFLDEIGELPLELQAKLLRVIEDGKFERLGSPHSIKVDARIITSTNRN 471 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 L + + +FR DLF+RL+VFP+ +PPLR+R DIPLL + FT K ++ + I IP + Sbjct: 472 LEDEISEGRFREDLFFRLSVFPIIIPPLRERKADIPLLVEFFTHKCSKVHRKNIRHIPAQ 531 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 ++ L ++ WPGNVREL NVIERAV++T+G L L + L + S + Sbjct: 532 TMKSLENYGWPGNVRELMNVIERAVIVTQGTELQL------AGQLSAHSIRSRKERGIEG 585 Query: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670 P + ER+ I++ L+E + GP GAA RL M +TL +RM++L I E L Sbjct: 586 SEKPAFKGLNGVERRHILETLQEAGWKIEGPGGAAQRLEMNPSTLRTRMKKLQIKRPETL 645 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 162/497 (32%), Positives = 246/497 (49%), Gaps = 33/497 (6%) Query: 175 ADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQ 234 A E+ + + + D + L + C + G++ Sbjct: 30 RRFASELEQVLEASHDGIFITD---GQGVILRVNSAWERICGISRDFVVGKN-------- 78 Query: 235 TRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSE 294 D W + L + + +L G ++A + E Sbjct: 79 ------AQEMVDKGFWSESAAICALKAKKEVTIML--KMTKGEKVGQKIMATGIPVMDDE 130 Query: 295 ENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAM 354 N + + I V D L E E L + + ++ +I+ S Sbjct: 131 GNIKRVVVNVRDITEIVNLRDQLEETQQLNEKYAAE---LEQMRIQHVQYDNIVASSPKT 187 Query: 355 EDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLES 414 + +L VAK DSTVLI GE+G GKE++A IH LS R PL+KINC AIP +LLES Sbjct: 188 KRVLDMAAQVAKVDSTVLITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLES 247 Query: 415 ELFGHDKGAFTGAINT-HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGG 473 ELFG++ GAFTGA G FE+A+ GTLFLDE+G+L L LQ KLLRVLQ+ E+ R+GG Sbjct: 248 ELFGYEPGAFTGARKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGG 307 Query: 474 SRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFT 533 + IPV+VR++AATN+DL +MV +FR DL+YRLNV +E+PPLR+R EDIPLLA HF Sbjct: 308 LKPIPVDVRIVAATNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFL 367 Query: 534 QKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSR 593 +K+ + + + +L ++ WPGN+RELENVIER +++T+ + + + Sbjct: 368 EKINKKYGFN-KRFAPDVIDRLSAYPWPGNIRELENVIERVMVMTKSDEIRTIHLPGNIK 426 Query: 594 LLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRT 653 L +L D + P + E+ I Q L++ R A L + ++ Sbjct: 427 NLSSLQNDIMFSE-----IMPLKKAVEHVEKHLIEQALKKYG----STRKVARALKVNQS 477 Query: 654 TLLSRMQRLGISVREVL 670 T++ ++++ +S + L Sbjct: 478 TIVRKIKKYKLSAGQEL 494 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 160/473 (33%), Positives = 248/473 (52%), Gaps = 23/473 (4%) Query: 192 MVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQ 251 +++ + + L + + R + + + ++ QP + DL + + Sbjct: 27 VLIVEDEPHALTGLAELVSAWDYRTETAR----DGIEALEKVRGWQPAIV--VTDLKMPR 80 Query: 252 RDPLLLLLASNGCE-SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIA 310 D + LL N + S +I LT A+ + + ++ ++ Sbjct: 81 MDGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRL-------- 132 Query: 311 VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST 370 S Q +Q+E +L S G+G ++ SQ M+D+ ++ VA ++ + Sbjct: 133 ----RTILSNVSRQLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVS 188 Query: 371 VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINT 430 VLI GE+GTGKE++A+ +H+LSPR++KP V +NCAAIP +L+ESE+FGH+KGAFTGAI Sbjct: 189 VLITGESGTGKELVAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIER 248 Query: 431 HRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490 G FE+A+ GTL LDEIG++P+ Q KLLRVL++R RLG P++VRV+AATN++ Sbjct: 249 RAGCFELAEEGTLLLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKN 308 Query: 491 LWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE 550 Q V D + R DL+YRLNVF + +PPLR+ EDIP +A+ M +RAI+ + E Sbjct: 309 PDQAVADGELRGDLYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDE 368 Query: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLL-PTLNEDSALRSSMA 609 +L+S+DWPGNVREL N +ERAV+L G+ L P Sbjct: 369 MQARLLSYDWPGNVRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPAN 428 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRL 662 + DE ER I++ L T+ AA LG+ TL ++++ Sbjct: 429 AVQVEVGTTVDEAERLLILKTLESTHN---NKTRAAEILGISLKTLHNKLKEY 478 >UniRef50_A9GQL8 Protein kinase n=3 Tax=Bacteria RepID=A9GQL8_SORC5 Length = 1576 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 179/655 (27%), Positives = 267/655 (40%), Gaps = 71/655 (10%) Query: 68 HDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARII 127 + G + A + + ++ A L + L + Sbjct: 934 TERGHLIRARHDREEALITLEEIASKLPRDLREVFWNDARRKEIRAAAMLELMSSRTVPF 993 Query: 128 TPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGL 187 T A + D +++I + DL L+A V Sbjct: 994 T-------QQSAAAQAGAAPPQGEDRLARVLEINREIAGEHDLTRLLAKVTDHAIALLQA 1046 Query: 188 ASVSMVLGDHRKNEKFSLWCSDL------SASHCACLPRCMPGESVLLTQTLQTRQPTLT 241 ++L ++E + ++ A S + + + T +P +T Sbjct: 1047 ERGFIILQRPPRDELQQVAGEGAVDLSIHASRDQAGDDPHARFSSSIAERVISTGEPVVT 1106 Query: 242 HRADDLFLWQRDPLLLLLASNGCESALLIPLTFG-NHTPGALLLA-HTSSTLFSEENCQL 299 A D + L +S +P+ GAL L S+ E Sbjct: 1107 ASARDDARMSDYVSVHQLM---LQSVACVPIRQRSGQVIGALYLETRLSAAAKFEVELPT 1163 Query: 300 LQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQ---------------------- 337 L +AD++AIA+ A L++ N +L Sbjct: 1164 LSALADQVAIAIETARLVSENERRARELERANEELRAARAKLEELLGHRTAQLAATRRDL 1223 Query: 338 ------LLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQL 391 + + G ++ S+AM + +D V +D +LI GE+GTGKEV+AR IH Sbjct: 1224 RSARAVIRGHFGYEGLVGTSEAMRRVYALIDRVKDTDIPILITGESGTGKEVVARTIHNA 1283 Query: 392 SPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDL 451 SPR KP V +NC AIP LLESELFGH +GAFTGA +G F GGT+ LDEIG++ Sbjct: 1284 SPRAKKPFVGVNCGAIPEHLLESELFGHVRGAFTGADRDRKGLFREVTGGTILLDEIGEM 1343 Query: 452 PLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVF 511 P ++Q LLRVLQE+ + +GG+R PV+ RVIAAT+RDL MV FR DL+YRL+V Sbjct: 1344 PQKMQAGLLRVLQEKVVRPVGGAREEPVDARVIAATHRDLADMVSRGTFREDLYYRLHVV 1403 Query: 512 PLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVI 571 + +P LR R EDIPLL +F A R ++ AL++L ++ WPGNVR+LENV+ Sbjct: 1404 EVRVPSLRQRIEDIPLLIDYFLGIFAARYGRDRRSVSRAALKRLSAYTWPGNVRQLENVL 1463 Query: 572 ERAVLLTRGNSLNLHLNVRQSRLLPTLNED----------------------SALRSSMA 609 A +L+ L +L A SS Sbjct: 1464 LNAWVLSDRPELESEDFELPDAAPRSLRGSLDGGAAPPPRAPAGGGAPASAGRAPPSSDP 1523 Query: 610 QLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGI 664 + + + ER+RI+ L N AA +G+ R T R++ GI Sbjct: 1524 HRVETSLDAHKASERERILVALSSCNW---NRVKAAQVVGLPRRTFYRRLKEYGI 1575 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.155 0.520 Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,360,752,142 Number of Sequences: 3077464 Number of extensions: 274972428 Number of successful extensions: 696976 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7719 Number of HSP's successfully gapped in prelim test: 3593 Number of HSP's that attempted gapping in prelim test: 670899 Number of HSP's gapped (non-prelim): 15102 length of query: 670 length of database: 1,040,396,356 effective HSP length: 136 effective length of query: 534 effective length of database: 621,861,252 effective search space: 332073908568 effective search space used: 332073908568 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 97 (41.7 bits)