BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (334 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P06974 Flagellar motor switch protein fliM n=208 Tax=Pr... 677 0.0 UniRef50_D2T5W7 Flagellar motor switch protein FliM n=2 Tax=Erwi... 434 e-120 UniRef50_Q0K3R1 Flagellar motor switch protein n=57 Tax=Proteoba... 378 e-103 UniRef50_Q2NX04 Flagellar motor switch protein FliM n=1 Tax=Soda... 296 8e-79 UniRef50_UPI0001910677 flagellar motor switch protein FliM n=2 T... 289 1e-76 UniRef50_Q51465 Flagellar motor switch protein fliM n=158 Tax=Pr... 245 2e-63 UniRef50_B2TXI0 Flagellar motor switch protein FliM n=4 Tax=Ente... 234 4e-60 UniRef50_B5YIZ4 Flagellar motor switch protein FliM n=1 Tax=Ther... 224 2e-57 UniRef50_Q31FP9 Flagellar motor switch protein FliM n=1 Tax=Thio... 211 3e-53 UniRef50_C0QAJ4 FliM n=1 Tax=Desulfobacterium autotrophicum HRM2... 206 8e-52 UniRef50_A3EQZ9 Flagellar motor switch protein FliM n=2 Tax=Lept... 198 2e-49 UniRef50_C6NYG8 Flagellar motor switch protein FliM n=1 Tax=Acid... 193 6e-48 UniRef50_C6HWH3 Flagellar motor switch protein FliM n=1 Tax=Lept... 189 2e-46 UniRef50_B8FK38 Flagellar motor switch protein FliM n=1 Tax=Desu... 188 2e-46 UniRef50_Q2LT03 Flagellar motor switch protein n=1 Tax=Syntrophu... 187 6e-46 UniRef50_Q1NVK6 Surface presentation of antigens (SPOA) protein:... 184 6e-45 UniRef50_Q6MI46 Flagellar motor switch protein FliM n=1 Tax=Bdel... 181 3e-44 UniRef50_C6BTE8 Flagellar motor switch protein FliM n=13 Tax=Des... 174 6e-42 UniRef50_Q1YV70 Flagellar motor switch protein FliM n=1 Tax=gamm... 162 1e-38 UniRef50_Q8D3E8 FliM protein n=1 Tax=Wigglesworthia glossinidia ... 157 6e-37 UniRef50_C6N2P9 Flagellar motor switch protein FliM n=1 Tax=Legi... 149 1e-34 UniRef50_Q5ZUK6 Flagellar protein n=4 Tax=Legionella pneumophila... 147 5e-34 UniRef50_B8FTQ9 Flagellar motor switch protein FliM n=3 Tax=Clos... 140 5e-32 UniRef50_D2R066 Flagellar motor switch protein FliM n=4 Tax=Plan... 137 4e-31 UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natr... 136 8e-31 UniRef50_C1TKI5 Flagellar motor switch protein FliM n=1 Tax=Deth... 135 3e-30 UniRef50_B0THB4 Flagellar motor switch protein flim n=5 Tax=Clos... 134 6e-30 UniRef50_P23453 Flagellar motor switch protein fliM n=32 Tax=Bac... 132 1e-29 UniRef50_C8WWF8 Flagellar motor switch protein FliM n=2 Tax=Alic... 130 6e-29 UniRef50_C1SNF9 Flagellar motor switch protein FliM n=1 Tax=Deni... 128 3e-28 UniRef50_Q57511 Flagellar motor switch protein fliM n=33 Tax=Spi... 128 3e-28 UniRef50_C8WYW2 Flagellar motor switch protein FliM n=1 Tax=Desu... 127 7e-28 UniRef50_A6Q2L2 Flagellar motor switch protein FliM n=4 Tax=Bact... 126 1e-27 UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halo... 125 2e-27 UniRef50_A0Y177 Flagellar motor switch protein M n=1 Tax=Alterom... 124 5e-27 UniRef50_Q5FT23 Flagellar motor switch protein FliM n=1 Tax=Gluc... 124 6e-27 UniRef50_A9KNE7 Flagellar motor switch protein FliM n=1 Tax=Clos... 121 3e-26 UniRef50_B3EAW6 Flagellar motor switch protein FliM n=9 Tax=Desu... 120 5e-26 UniRef50_Q30SP5 Surface presentation of antigens (SPOA) protein:... 118 3e-25 UniRef50_A8UVU1 Flagellar motor switch protein FliM n=1 Tax=Hydr... 115 2e-24 UniRef50_B0P9Y0 Putative uncharacterized protein n=1 Tax=Anaerot... 115 2e-24 UniRef50_B9KJD8 Flagellar switch protein n=8 Tax=Rhodobacterales... 114 5e-24 UniRef50_A6TKX0 Flagellar motor switch protein FliM n=4 Tax=Clos... 114 6e-24 UniRef50_Q3ADB8 Flagellar motor switch protein FliM n=6 Tax=Clos... 113 9e-24 UniRef50_C4Z5H1 Flagellar motor switch protein FliM n=7 Tax=Bact... 112 2e-23 UniRef50_A9HHK3 Flagellar motor switch protein FliM n=1 Tax=Gluc... 112 2e-23 UniRef50_A6BA62 Flagellar motor switch protein FliM n=1 Tax=Vibr... 110 9e-23 UniRef50_C0GJF2 Flagellar motor switch protein FliM n=1 Tax=Deth... 109 1e-22 UniRef50_B5Y7E9 Flagellar motor switch protein FliM n=1 Tax=Copr... 109 2e-22 UniRef50_Q2RZE2 Flagellar motor switch protein FliM n=2 Tax=Rhod... 108 3e-22 UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clo... 108 3e-22 UniRef50_A5D0K2 Flagellar motor switch protein n=1 Tax=Pelotomac... 108 3e-22 UniRef50_A5V6A6 Flagellar motor switch protein FliM n=1 Tax=Sphi... 106 1e-21 UniRef50_A6M1D3 Flagellar motor switch protein FliM n=26 Tax=Clo... 105 2e-21 UniRef50_A8ERA3 Flagellar motor switch protein FliM n=1 Tax=Arco... 105 2e-21 UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Ther... 105 2e-21 UniRef50_Q4JMS1 Predicted flagellar motor switch protein n=2 Tax... 105 2e-21 UniRef50_B8I3P2 Flagellar motor switch protein FliM n=2 Tax=Clos... 105 2e-21 UniRef50_Q3A5D9 Flagellar biosynthesis protein, component of mot... 105 3e-21 UniRef50_B2V6S5 Flagellar motor switch protein FliM n=2 Tax=Sulf... 104 5e-21 UniRef50_Q7UNV1 Flagellar motor switch protein fliM n=1 Tax=Rhod... 103 7e-21 UniRef50_B4U6V4 Flagellar motor switch protein FliM n=1 Tax=Hydr... 103 1e-20 UniRef50_A8F895 Flagellar motor switch protein FliM n=10 Tax=The... 103 1e-20 UniRef50_C8WBT4 Surface presentation of antigens (SPOA) protein ... 102 1e-20 UniRef50_B6IQ99 Flagellar motor switch protein FliM n=2 Tax=Rhod... 102 3e-20 UniRef50_A0LDL0 Flagellar motor switch protein FliM n=4 Tax=cell... 100 1e-19 UniRef50_B0MPD5 Putative uncharacterized protein n=1 Tax=Eubacte... 99 2e-19 UniRef50_C8W1I5 Flagellar motor switch protein FliM n=1 Tax=Desu... 99 2e-19 UniRef50_Q01VK1 Flagellar motor switch protein FliM n=1 Tax=Cand... 98 4e-19 UniRef50_C2ED82 Flagellar motor switch protein FliM n=5 Tax=Lact... 98 5e-19 UniRef50_A0LT67 Flagellar motor switch protein FliM n=1 Tax=Acid... 98 5e-19 UniRef50_Q1JZS7 Flagellar motor switch protein FliM n=1 Tax=Desu... 97 7e-19 UniRef50_A9BEY4 Flagellar motor switch protein FliM n=1 Tax=Petr... 97 9e-19 UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobac... 96 1e-18 UniRef50_A6DWS9 Flagellar switch protein FliM n=1 Tax=Roseovariu... 94 5e-18 UniRef50_P34009 Flagellar motor switch protein fliM n=45 Tax=Alp... 94 7e-18 UniRef50_B4UFI3 Flagellar motor switch protein FliM n=3 Tax=Anae... 93 1e-17 UniRef50_Q12PK7 Surface presentation of antigens (SPOA) protein ... 93 1e-17 UniRef50_P57182 Flagellar motor switch protein fliM n=4 Tax=Buch... 92 2e-17 UniRef50_UPI00016C0DBD flagellar motor switch protein FliM n=1 T... 92 3e-17 UniRef50_B6R823 Flagellar motor switch protein FliM n=1 Tax=Pseu... 90 1e-16 UniRef50_A4A5Y9 Flagellar motor switch protein FliM n=2 Tax=uncl... 89 2e-16 UniRef50_B1ZR35 Flagellar motor switch protein FliM n=3 Tax=Verr... 87 6e-16 UniRef50_Q6AJS9 Related to flagellar motor switch protein (FliM)... 86 2e-15 UniRef50_A8U604 Flagellar motor switch protein fliM n=1 Tax=Carn... 85 4e-15 UniRef50_A3U1I7 Flagellar motor switch protein FliM n=1 Tax=Ocea... 84 5e-15 UniRef50_C5EFH3 Flagellar motor switch protein FliM n=3 Tax=Clos... 84 8e-15 UniRef50_D2S983 Flagellar motor switch protein FliM n=1 Tax=Geod... 82 2e-14 UniRef50_A6W8L0 Flagellar motor switch protein FliM n=1 Tax=Kine... 81 5e-14 UniRef50_Q1Q6R4 Similar to flagellar motor switch n=1 Tax=Candid... 81 6e-14 UniRef50_A5FX59 Flagellar motor switch protein FliM n=1 Tax=Acid... 80 8e-14 UniRef50_Q1NGL0 Flagellar switch protein n=1 Tax=Sphingomonas sp... 80 1e-13 UniRef50_A9DR47 Flagellar motor switch protein n=1 Tax=Oceanibul... 79 3e-13 UniRef50_C1A553 Flagellar motor switch protein FliM n=1 Tax=Gemm... 78 5e-13 UniRef50_B8HEJ5 Surface presentation of antigens (SPOA) protein ... 77 1e-12 UniRef50_Q0EZ62 Flagellar motor switch protein FliM n=1 Tax=Mari... 76 2e-12 UniRef50_Q89AZ4 Flagellar motor switch protein fliM n=1 Tax=Buch... 75 3e-12 UniRef50_A9W0F0 Flagellar motor switch protein FliM n=7 Tax=Alph... 75 4e-12 UniRef50_D0I456 Flagellar motor switch protein FliM n=2 Tax=Vibr... 74 7e-12 UniRef50_C6WJP9 Flagellar motor switch protein FliM n=1 Tax=Acti... 74 7e-12 UniRef50_Q1IR62 Flagellar motor switch protein FliM n=1 Tax=Cand... 73 1e-11 UniRef50_C1F3H9 Putative flagellar motor switch protein FliM n=1... 72 2e-11 UniRef50_B1M7I2 Flagellar motor switch protein FliM n=4 Tax=Alph... 72 2e-11 UniRef50_Q2CGI2 Possible flagellar motor switch protein FliM n=1... 72 4e-11 UniRef50_Q0FMH0 Flagellar motor switch protein fliM n=1 Tax=Rose... 70 1e-10 UniRef50_C2KZ05 Flagellar motor switch protein FliM n=1 Tax=Orib... 70 1e-10 UniRef50_B2IJZ9 Flagellar motor switch protein FliM n=1 Tax=Beij... 69 3e-10 UniRef50_C0C1P2 Putative uncharacterized protein n=1 Tax=Clostri... 67 9e-10 UniRef50_D1BCL9 Flagellar motor switch protein n=1 Tax=Sanguibac... 65 4e-09 UniRef50_A1SEN6 Flagellar motor switch protein FliM n=1 Tax=Noca... 64 6e-09 UniRef50_Q8KA39 Flagellar motor switch protein fliM n=1 Tax=Buch... 63 2e-08 UniRef50_C2KTP4 Flagellar motor switch protein FliM n=3 Tax=Mobi... 61 6e-08 UniRef50_C6QEZ9 Surface presentation of antigens (SPOA) protein ... 60 8e-08 UniRef50_C7M221 Surface presentation of antigens (SPOA) protein ... 60 1e-07 UniRef50_A3T063 Flagellar motor switch protein n=2 Tax=Sulfitoba... 60 1e-07 UniRef50_B9L5A2 Flagellar motor switch protein FliM n=2 Tax=Ther... 60 2e-07 UniRef50_D2LCZ9 Flagellar motor switch protein FliM n=1 Tax=Rhod... 59 2e-07 UniRef50_Q8GKQ6 FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP... 59 3e-07 UniRef50_B9IWG1 Flagellar motor switch protein FliM n=70 Tax=Bac... 58 6e-07 UniRef50_Q1GNY8 Surface presentation of antigens (SPOA) protein ... 57 7e-07 UniRef50_B8EL07 Surface presentation of antigens (SPOA) protein ... 56 2e-06 UniRef50_B9T9Y1 Putative uncharacterized protein n=1 Tax=Ricinus... 56 2e-06 UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=... 54 9e-06 UniRef50_UPI000169865A flagellar motor switch protein FliM n=1 T... 54 1e-05 UniRef50_Q21AD3 Flagellar motor switch protein FliM n=3 Tax=Brad... 51 5e-05 UniRef50_C7R0I8 Flagellar motor switch protein FliM n=1 Tax=Jone... 50 1e-04 UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmi... 50 1e-04 UniRef50_B8DI83 Flagellar motor switch protein n=18 Tax=Listeria... 49 3e-04 UniRef50_Q0G106 Putative uncharacterized protein n=1 Tax=Fulvima... 48 6e-04 UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion... 47 7e-04 UniRef50_Q44457 Flagellar motor switch protein fliM n=11 Tax=Rhi... 47 0.001 UniRef50_D2UDN4 Probable xanthomonas secretion apparatus protein... 46 0.002 UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brev... 45 0.003 UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion... 45 0.003 UniRef50_A0Z384 Flagellar motor switch protein n=1 Tax=marine ga... 45 0.003 UniRef50_Q1YLL0 Possible flagellar motor switch protein fliM n=1... 45 0.005 UniRef50_Q18D13 Putative flagellar motor switch protein n=5 Tax=... 45 0.005 UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Therm... 43 0.013 UniRef50_A9CYK4 Flagellar motor switch transmembrane protein n=1... 42 0.023 UniRef50_Q11LL7 Surface presentation of antigens (SPOA) protein ... 42 0.042 UniRef50_O54246 Flagellar motor switch protein fliM n=3 Tax=Rhiz... 40 0.093 >UniRef50_P06974 Flagellar motor switch protein fliM n=208 Tax=Proteobacteria RepID=FLIM_ECOLI Length = 334 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/334 (100%), Positives = 334/334 (100%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER Sbjct: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP Sbjct: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV Sbjct: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR Sbjct: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP Sbjct: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK Sbjct: 301 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 >UniRef50_D2T5W7 Flagellar motor switch protein FliM n=2 Tax=Erwinia pyrifoliae RepID=D2T5W7_ERWPY Length = 334 Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust. Identities = 218/334 (65%), Positives = 267/334 (79%), Gaps = 5/334 (1%) Query: 1 MGDSILSQAEIDALLN---GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 M D+ LSQAEID LLN GD +E + SV+ E+ +PYDP+TQRRV+RERL +LEII Sbjct: 3 MSDNFLSQAEIDHLLNADGGDDRQVEEQSGSVTREA--QPYDPHTQRRVIRERLHSLEII 60 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 NERFAR FRMGLFNLLRRSPDIT G I+IQPYHEFARNLPVPTNLNL+HL PLRGT L+ Sbjct: 61 NERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMA 120 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 FSP +VF+AVDNLFGGDGRFPTK +GREFT TEQRVI+RML +A E Y AW I ++ Sbjct: 121 FSPGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKT 180 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 EY+RSE+QVKFTNIT+SPND+VV TPF +EIG+ GEFNIC+PFS IEPLRELL NPP+E Sbjct: 181 EYIRSEIQVKFTNITSSPNDVVVTTPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPME 240 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVD 297 NS ED WR LV Q++ ++LELVA F D+ RL+ ++K GDV+P++KP+ I A V Sbjct: 241 NSGQEDTQWRGLLVSQMRETELELVATFPDVPTRLTNVMKFKKGDVIPLDKPELIAASVG 300 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINPILNSLNEE 331 GVPV T++YG++N Q+AL++E +I L+SLN+E Sbjct: 301 GVPVFTAKYGSVNNQFALKVEQMIPSALHSLNKE 334 >UniRef50_Q0K3R1 Flagellar motor switch protein n=57 Tax=Proteobacteria RepID=Q0K3R1_RALEH Length = 339 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 176/322 (54%), Positives = 237/322 (73%), Gaps = 4/322 (1%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTAS--VSGESDIRPYDPNTQRRVVRERLQALEIINER 60 D LSQ E+D LL G S D P AS E +RPY+ TQ R++R RL LEIINER Sbjct: 4 DKFLSQDEVDELLKGVSGEADTPKASEPALDEGGVRPYNLATQERIIRGRLHTLEIINER 63 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FAR R LFN +RR DITVG+IRI+ + +FARNLP+PTNLNL+HLKPLRGT L V+ P Sbjct: 64 FARSMRTALFNFIRRGADITVGSIRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFVYDP 123 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 +LVF+ VDNLFGGDGRF T+VEGR+FT TEQR+I RML+L L Y +AW+ ++P+E EY+ Sbjct: 124 NLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVHPIETEYI 183 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 RSEM KF N+ T N+ VV T FH+E+G + G+ ++CLP++MIEPL++LL+N PL++ + Sbjct: 184 RSEMHPKFANVATH-NEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMN-PLQDEK 241 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 D+ W L Q++ +++ELVA FA + ++++L + GDVLPIE P+++ VDGVP Sbjct: 242 EVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEKVFGKVDGVP 301 Query: 301 VLTSQYGTLNGQYALRIEHLIN 322 V+ +GT+NGQYALR+E +IN Sbjct: 302 VMQCGFGTMNGQYALRVERMIN 323 >UniRef50_Q2NX04 Flagellar motor switch protein FliM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NX04_SODGM Length = 340 Score = 296 bits (758), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 149/293 (50%), Positives = 197/293 (67%), Gaps = 3/293 (1%) Query: 37 PYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL 96 P+D +RR ERL+ LE+IN+ FA FR LF L++R DI+ AI IQPY EFA L Sbjct: 44 PFDAAQRRRQGGERLKGLEMINQDFAGRFRSALFILMQRRTDISAEAILIQPYREFAAQL 103 Query: 97 PVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINR 156 P +LNLI LKPLRG L F+P L+F +D LFGG GR P E R FT EQRVI+R Sbjct: 104 RPPASLNLIDLKPLRGNTLFAFTPGLIFTTLDTLFGGSGRLPDAQE-RAFTPAEQRVIDR 162 Query: 157 MLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFN 216 +LKL L+ Y DAW ++PLE E++ +E +FT S ++VV +PF V IG + GEF Sbjct: 163 LLKLMLQAYGDAWLGLHPLEPEFITAETSCRFTGF--SDGEMVVISPFRVAIGAMQGEFA 220 Query: 217 ICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL 276 I + +EPL E+L P E+ R + +WR NL RQ+Q ++LELVA FAD+ L LS+++ Sbjct: 221 IVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARQLQGTELELVARFADLPLCLSRVM 280 Query: 277 KLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 +L GD+LPI +PDR+ A VDGVPV YG+LNG+YALR+EH+IN ++ LN Sbjct: 281 ELRRGDILPIPRPDRLTACVDGVPVFLGNYGSLNGRYALRVEHVINQGIDQLN 333 >UniRef50_UPI0001910677 flagellar motor switch protein FliM n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001910677 Length = 147 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 141/147 (95%), Positives = 145/147 (98%) Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR Sbjct: 1 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 60 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 +EDQNWRDNLVRQVQHS+LELVANFADI LRLSQILKL PGDVLPIEKPDRIIAHVDGVP Sbjct: 61 HEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPDRIIAHVDGVP 120 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNS 327 VLTSQYGT+NGQYALR+EHLINPILNS Sbjct: 121 VLTSQYGTVNGQYALRVEHLINPILNS 147 >UniRef50_Q51465 Flagellar motor switch protein fliM n=158 Tax=Proteobacteria RepID=FLIM_PSEAE Length = 323 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 134/315 (42%), Positives = 193/315 (61%), Gaps = 7/315 (2%) Query: 5 ILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 +LSQ EIDALL+G D V+ E A+ ++ YD +Q R+VR R+ LE+INERFA Sbjct: 6 LLSQDEIDALLHGVDDGLVETEVEAT---PGSVKSYDLTSQDRIVRGRMPTLEMINERFA 62 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R+ R+ +FNLLRRS D+ VG +++ + E+ +L VPT+LNL+ +KPLRGT L + L Sbjct: 63 RYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKL 122 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 VF VDN FGGDGR K+EGREFT TE RV+ +L+ A +AW+A+ + EYV S Sbjct: 123 VFKLVDNFFGGDGRH-AKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMNFEYVNS 181 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242 E+ NI + +VV+T FH+E+ G+ +I +P+SMIEP+RE+L + ++ Sbjct: 182 EVNPAMANIVSPSEVVVVST-FHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQ 240 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVL 302 D+ W L V Q+ L A L+L IL + PGDV+P+E P+ ++ +GVP Sbjct: 241 DERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPEHMVMRANGVPAF 300 Query: 303 TSQYGTLNGQYALRI 317 + G G AL+I Sbjct: 301 KVKLGAHKGNLALQI 315 >UniRef50_B2TXI0 Flagellar motor switch protein FliM n=4 Tax=Enterobacteriaceae RepID=B2TXI0_SHIB3 Length = 122 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/117 (98%), Positives = 115/117 (98%) Query: 218 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 277 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV NFADISLRLSQILK Sbjct: 6 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVTNFADISLRLSQILK 65 Query: 278 LNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 L PGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK Sbjct: 66 LKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 122 >UniRef50_B5YIZ4 Flagellar motor switch protein FliM n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIZ4_THEYD Length = 322 Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 194/321 (60%), Gaps = 12/321 (3%) Query: 3 DSILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 D ILSQ EIDALL G S EV+ E + SG +RPYD +Q ++VR ++ +L+IINER Sbjct: 4 DEILSQDEIDALLKGISGGEVETETAEAPSG---VRPYDFTSQEKIVRGKMPSLDIINER 60 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 AR FR+ L + +R+ D+ + I +++F R++P P++LN+I L+PLRG LVVF Sbjct: 61 LARSFRVSLASDIRKIVDVINVNVNITKFYDFLRSVPFPSSLNIIKLEPLRGFSLVVFDA 120 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 ++F ++ FGG G+ K EGREFT EQR+I++++ + LE +AWK I ++ ++ Sbjct: 121 PMIFTLIEFYFGGSGKGYYKPEGREFTPIEQRIIHKVVMMFLESMEEAWKPIFQIKPHFI 180 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 R+EM +F I T P D+V+ T F +EI + +C+P+S +EP++E L + L + Sbjct: 181 RTEMNPQFVTIVT-PVDVVIETEFTLEIETRECKIMVCIPYSSVEPIKEKLYSAFLADRD 239 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVD--- 297 D W L Q++++ +++ A +++ +L L GD++ +++ RI VD Sbjct: 240 EMDMKWIGRLKAQIKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQR--RIDEEVDLLV 297 Query: 298 -GVPVLTSQYGTLNGQYALRI 317 GVP + GT G YA++I Sbjct: 298 EGVPKFKGKLGTFKGNYAIKI 318 >UniRef50_Q31FP9 Flagellar motor switch protein FliM n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FP9_THICR Length = 339 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 184/326 (56%), Gaps = 14/326 (4%) Query: 3 DSILSQAEIDALLNG------DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEI 56 D ILSQ E+DALL G D+E D P S + YD Q R+VR RL AL+I Sbjct: 2 DDILSQDEVDALLKGMGGGDVDTE-GDNPAEGTSA----KVYDFTNQERIVRGRLPALDI 56 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 INERFAR F+ ++ S ++T G ++I ++ RNL VPT+LN+ + PL G L Sbjct: 57 INERFARGFQRHFNEMIMSSVEVTAGEVKIIKMIDYLRNLFVPTSLNIYRINPLNGVSLF 116 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 L+F AVD FGG G P K+EGRE+T E ++ +L ++ + AW + +E Sbjct: 117 TLDSKLIFTAVDMYFGGTGLLPFKIEGREYTPVEMSMVRSILDMSSDNLRKAWAPVMDIE 176 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 ++Y+ SEM KF +I + D++V +P +V + G +I +P++M+EP+R+ L + Sbjct: 177 IDYMHSEMNPKFASIVDA-TDMIVVSPINVRFEGVEGRVDIVMPYAMLEPVRDKL-EEGM 234 Query: 237 ENSRNEDQN-WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAH 295 N + E N W L + ++ ++EL N ++ + + ++K+ GD++PIE P+ + Sbjct: 235 SNLQGESDNRWSRTLKEETKNIEIELAVNLLELQMSMDDLMKMEKGDIIPIEMPELVTVK 294 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLI 321 +G+ VL + G + A++IE ++ Sbjct: 295 AEGIGVLKGKVGESRDRKAVKIEQIL 320 >UniRef50_C0QAJ4 FliM n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAJ4_DESAH Length = 326 Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 114/319 (35%), Positives = 172/319 (53%), Gaps = 5/319 (1%) Query: 5 ILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 ILSQ E+D+LL G EV+ E +S I YD +Q +VVR R+ ++INER + Sbjct: 4 ILSQDEVDSLLAGLDSGEVESETEVELSDPEGIVTYDFTSQDKVVRARMPTFDVINERLS 63 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R R L LL+ + D+T + + EF R+LPVPT+L++ ++PLRG GLVV L Sbjct: 64 REIRTSLSGLLQTNVDVTANPLDTLKFTEFVRSLPVPTSLHVFRMEPLRGHGLVVLESQL 123 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 V+ +D FGG+G +VEGREFT E+ +I +++ L+ AW I P++ +RS Sbjct: 124 VYNLIDTFFGGEGLGKARVEGREFTAIEEVMIKKVVVACLKDIEKAWLPIEPVKTSLIRS 183 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242 EM +F I P D+V+ T F +E+ G +CLP++MIEPLR L + + Sbjct: 184 EMNPQFAAIVL-PTDLVIVTRFEIELEQAAGNLVLCLPYAMIEPLRAKLASGFQAETEEI 242 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDGVP 300 D WR L + S + L + +++ L PGDV+ + + D + +VDG+P Sbjct: 243 DVAWRKRLQEIILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTGYVDGLP 302 Query: 301 VLTSQYGTLNGQYALRIEH 319 + G G A R+E Sbjct: 303 KVRGFAGVQRGFQAFRVEK 321 >UniRef50_A3EQZ9 Flagellar motor switch protein FliM n=2 Tax=Leptospirillum sp. Group II RepID=A3EQZ9_9BACT Length = 338 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 107/327 (32%), Positives = 187/327 (57%), Gaps = 6/327 (1%) Query: 1 MGDSILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M +SILSQ E++ALL G + E++ + A+ SGE ++ Y+ +Q RV+R R+ LEIIN Sbjct: 1 MSESILSQEEVNALLRGLSEGEIETQAKAADSGEP-VKQYNLASQERVIRGRMPTLEIIN 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 ERFAR F++ L LR++ + + I + + +F + +P+P+N+N++ L+ LR L++ Sbjct: 60 ERFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLII 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +V++ VD++FGG GR K+EGR+F+ E R+ ++ LA+ + AW ++P+ + Sbjct: 120 DARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPVHPMPIT 179 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 Y+RSE+ +F I +P ++VV + +EI IC+P+S IEP++E L + Sbjct: 180 YIRSEINPQFAAI-VAPTEMVVTMAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSD 238 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 D W + L +V+ + LE+ A + L IL GDV +++ + + V Sbjct: 239 QYEVDSRWINRLQERVEEAPLEIEAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRV 298 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLINP 323 +G+ ++ G A+RIE + P Sbjct: 299 EGIVRFLARPGIFRHHRAIRIERRVPP 325 >UniRef50_C6NYG8 Flagellar motor switch protein FliM n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG8_9GAMM Length = 366 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 107/341 (31%), Positives = 183/341 (53%), Gaps = 24/341 (7%) Query: 6 LSQAEIDALLNGDS------EVKDEPTASVSGES-----------------DIRPYDPNT 42 LSQ EIDA++ G S + D P +V E+ I P D Sbjct: 8 LSQEEIDAMMGGGSPSEKNTDADDGPGKTVGTEARRTDQASTSQAPTSSGPTIVPLDLLN 67 Query: 43 QRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL 102 Q R+ R R+ +E++N+RFAR FR LFN LR + DI + +IQ Y E+ + +P+ Sbjct: 68 QDRMNRSRMPTMEVLNDRFARSFRGSLFNYLRVNADIISLSAQIQKYGEYIGKIALPSYF 127 Query: 103 NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLAL 162 ++ L PLRG+ L + P L + ++ FGG+GR K+EGR+F+ EQRV N+++ A+ Sbjct: 128 VMVSLTPLRGSMLFIMDPYLCYAVIEAFFGGNGRLEPKLEGRDFSVIEQRVFNKIIDHAV 187 Query: 163 EGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS 222 E ++ AW+ I L + +RS+++ +F +I +S + VV + F +E+ +G+ C+P++ Sbjct: 188 EDFTSAWEPIIKLRPKVLRSDVKSQFVSIASS-TEGVVGSVFEIEMERWSGKLYTCIPYN 246 Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 +EPLRE LV+ + D +W+ L +Q++ +++ A + LS+ L GD Sbjct: 247 TVEPLREQLVSGVAADQSEMDPSWKQMLHMDIQNAMVDVSVILASQDIPLSRARTLQKGD 306 Query: 283 VLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 VL ++ +V+ + + +YG QYA+++ P Sbjct: 307 VLSFDRVQDARVYVEDILIGEGRYGAFKNQYAVKLVSYRTP 347 >UniRef50_C6HWH3 Flagellar motor switch protein FliM n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWH3_9BACT Length = 341 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/334 (31%), Positives = 184/334 (55%), Gaps = 6/334 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDE---PTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 M ++ILSQ E++ALL G E E P + R Y+ +Q RV+R R+ LEI+ Sbjct: 1 MAENILSQDEVNALLRGIVEGDVETSKPEVTEEAGKKTREYNLASQERVIRGRMPTLEIV 60 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 NERFAR F++ L + LR++ + + + + + EF + +P+P+N+N++ L+P++ L++ Sbjct: 61 NERFARFFQITLSSTLRKAVEFSPVSTEMIKFGEFIKKIPLPSNINILRLEPMKRNFLLI 120 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 +V++ VD+LFGG GR KVEGR+F+ E R+ +L A+ + AW ++ + V Sbjct: 121 IDARMVYLLVDHLFGGVGRGHVKVEGRDFSPIENRITRNILNQAIGDFEKAWAPVHHIGV 180 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 Y+RSE+ +F+ I SP ++V+ + ++I IC+P+S IEP++E L Sbjct: 181 SYIRSEINPQFSAI-VSPTEMVIALTYRLDIDGQGRPVYICIPYSTIEPIKEKLYTGFQS 239 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 + D W L +Q+ +++VA RLS++L PGD++ +++ D I Sbjct: 240 DQYEVDHRWILRLRQQIDSVPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKIT 299 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 V+ ++ G A+RIE + P L + Sbjct: 300 VEKALRFKARPGVYRSSRAVRIEERVFPDLTDVK 333 >UniRef50_B8FK38 Flagellar motor switch protein FliM n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FK38_DESAA Length = 325 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 5/325 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESD-IRPYDPNTQRRVVRERLQALEIINE 59 MGD ILSQ E+D+LL G S + E D + YD Q RV+R R+ LE++N+ Sbjct: 1 MGD-ILSQDEVDSLLQGISSGEIETEPEEEVSEDGVALYDFANQDRVIRGRMPTLEVVNK 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R AR F L +R + DI+V + + EF ++PVP N+++ ++PLRG L+V Sbjct: 60 RLARMFSSSLSATMRGAADISVRDTNMIKFSEFQSSIPVPANIHMFKMEPLRGHALLVVD 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LVF ++ FGG KVEGR+FT E ++I +++ + L+ + DAW I P++ Y Sbjct: 120 TPLVFQLIEYYFGGTPGGALKVEGRDFTRIENQIIRKVVGIFLKDFDDAWAPIFPIKPVY 179 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 VRSEM +F I P D+++ F VE+ G + +P+SM+EP+R+ L + ++ Sbjct: 180 VRSEMNPQFAVIGL-PIDLMIIVRFQVELETTEGGMTLAIPYSMLEPIRDKLYSGFQSDN 238 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 D +WR + QVQ +E+ + +++ L GDV+ +++ + + A + Sbjct: 239 LEADASWRKRVESQVQEVLVEICVELGTAVITAERLMSLRKGDVISLDQFADEPLTAKIQ 298 Query: 298 GVPVLTSQYGTLNGQYALRIEHLIN 322 GVP + + G + G A+ +E I Sbjct: 299 GVPKIAGKAGVVKGSKAIAVEGRIT 323 >UniRef50_Q2LT03 Flagellar motor switch protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT03_SYNAS Length = 333 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 172/321 (53%), Gaps = 4/321 (1%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASVSGE-SDIRPYDPNTQRRVVRERLQALEIINERFAR 63 IL+Q E+DALL G + + + E SDI YD +Q R++R R+ LE+ NE+FAR Sbjct: 4 ILTQEEVDALLRGITGGQIDTEIDEEEEPSDIVIYDLASQDRIIRGRMPTLEMTNEKFAR 63 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLV 123 FR L ++LR+ + ++ + + EF + LPVPT+L++ ++PLRG + V ++ Sbjct: 64 MFRTTLSSMLRKVVAVNSMSVDMIKFGEFLKTLPVPTSLHIFRMEPLRGNAIFVMESKVI 123 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 F VD LFGG G+ KVEGREFT E +I +++ AL AWK ++ + V Y RSE Sbjct: 124 FTLVDVLFGGAGKELFKVEGREFTAIETNLIKKVILSALSDLEKAWKTMHDIRVIYQRSE 183 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNED 243 + +F I P D+V F +E+ +TG +C+P+S +EP+RE L D Sbjct: 184 INPQFAQI-VPPTDLVFVVDFEIEVEYITGILKLCIPYSTVEPIREKLQAGFQSEQLEVD 242 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPV 301 + W + + L+++ + ++ L PGDV+ +++ D + V+G+ Sbjct: 243 KVWMKRFRDNLMLAHLDILIELGSTLISAKDVVNLKPGDVITLDQYCTDPVNIFVEGMMK 302 Query: 302 LTSQYGTLNGQYALRIEHLIN 322 GT G A+RI ++ Sbjct: 303 FKGYPGTYKGNQAVRISEIVQ 323 >UniRef50_Q1NVK6 Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM n=2 Tax=Deltaproteobacteria RepID=Q1NVK6_9DELT Length = 330 Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 159/290 (54%), Gaps = 3/290 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGES-DIRPYDPNTQRRVVRERLQALEIIN 58 M + ILSQ E+DALL G S DEP +V ES PYD Q+R+V+ ++ A++ I+ Sbjct: 1 MAEQILSQDEVDALLKGISGGDIDEPEEAVDAESLGYTPYDFTRQQRIVQVKMPAMDAIS 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + F R R L LRR DIT + ++ + F R LPVP++L + + P RG L+V Sbjct: 61 DTFMRSVRTSLSAALRRILDITAAPMEMERFGAFVRTLPVPSSLQVFKMAPFRGHALIVL 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 P LVF V++ GG G +VEGR+FT EQR+I R++ L L AW ++ PL+V+ Sbjct: 121 EPKLVFTLVESFLGGSGARNVRVEGRDFTAIEQRLIRRVVNLLLTDLEKAWYSLQPLKVQ 180 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 YVRSE+ +F I P D+VV + V++ G C+P + +E ++ L+ Sbjct: 181 YVRSEINPQFAKI-CQPEDVVVINRYDVDMDRAAGSITTCIPLANLESVKSKLMTTFQRE 239 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 ED + +V ++++++++ + + I+ L GD + +E+ Sbjct: 240 QSEEDIAIQRTIVDNIKNAEVDIKVELGKTKVPAADIINLAVGDTIQLER 289 >UniRef50_Q6MI46 Flagellar motor switch protein FliM n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI46_BDEBA Length = 333 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 102/327 (31%), Positives = 178/327 (54%), Gaps = 13/327 (3%) Query: 3 DSILSQAEIDALL----NGD--SEVKDEPTASVSGESD---IRPYDPNTQRRVVRERLQA 53 + +LSQ+E+DALL +GD S +P G+ D I YD +Q R++R RL Sbjct: 2 NQVLSQSEVDALLAAVSDGDVGSPEASKPETQNVGKVDERKIVSYDLTSQDRIIRGRLPQ 61 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 LE+I E+F R FR+ L + LR+ IT+ + + EF LP+PT ++++ LRG+ Sbjct: 62 LEVIYEKFMRAFRVSLSSALRKIASITLTSTEFLKFGEFINTLPMPTCMSVLRFGNLRGS 121 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 L V L + VD+ FGG R TK++G++FT E ++ +++ LA+ AW +I Sbjct: 122 ALFVIESKLAYALVDSFFGGADRPYTKIDGKDFTPIELSIVQKVVGLAINDMEMAWASIE 181 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRE-LLV 232 + +VR+E+ +F I P D+V+ + F VE+ N TG +I +P++ IEP+++ L Sbjct: 182 KIGCSFVRTEVNPQFVGI-VPPTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQT 240 Query: 233 NPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PD 290 +E + + + W + Q+ + +E+ N + ++L ++ L GDV+P+++ Sbjct: 241 GFQVETDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASG 300 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRI 317 V+GV YG +G A+++ Sbjct: 301 EFDVAVEGVRKFKGYYGIHHGTVAVQV 327 >UniRef50_C6BTE8 Flagellar motor switch protein FliM n=13 Tax=Desulfovibrionales RepID=C6BTE8_DESAD Length = 326 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 110/323 (34%), Positives = 175/323 (54%), Gaps = 7/323 (2%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASV-SGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 IL Q E+DALL G S + E + +S + +D Q R++R R+ LEI+N+RFAR Sbjct: 4 ILQQDEVDALLRGLSGGEVEAEQDIPDDDSGVVSFDLANQDRIIRGRMPVLEIVNDRFAR 63 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLV 123 L N +R+ DI +I + + +F R+LPVPT+L++ + PLRG ++V LV Sbjct: 64 LATNNLANTMRKRVDINPISIDMSKFGDFMRSLPVPTSLSIFKMDPLRGNAILVVDSRLV 123 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 F V++ FGG G P KVEGR+FT EQ +++R++K+AL D+W+ ++ + +E VRSE Sbjct: 124 FALVESFFGGSGSQP-KVEGRDFTPIEQAIVDRVVKIALSNLEDSWRPVHEVHLELVRSE 182 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE- 242 + +F I P+D+VV F VE+ N G +CLP+S +EP+R L + ++ R E Sbjct: 183 VNPQFAAI-VPPSDVVVVITFEVELENAIGSLIVCLPYSTLEPIRSKL-HASFQSERLEI 240 Query: 243 DQNWRDNLVRQVQHSQLELVANFA--DISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 D W ++ + ++L+ I+ R L+ +L ++ D + V GV Sbjct: 241 DHVWVSRFKERLLETPVDLLVRLGKTKITGRQLLNLEEGDLLLLDTDEEDMLECEVGGVL 300 Query: 301 VLTSQYGTLNGQYALRIEHLINP 323 G + A +I I P Sbjct: 301 KYLGSPGRVKANRAFQIAQAIEP 323 >UniRef50_Q1YV70 Flagellar motor switch protein FliM n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV70_9GAMM Length = 330 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/326 (31%), Positives = 173/326 (53%), Gaps = 5/326 (1%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 +++LS E+DAL G + E ++ E +D + + + A+++INERF Sbjct: 5 NNLLSPEELDALTAGLQDGSIEADTGLNSEVKAMRHDLTNEDSSLGVNIGAVDMINERFI 64 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R FR+GL +LR +P + +G ++I + E+ R+L P ++N I L PLRG + V PS+ Sbjct: 65 RQFRLGLLEVLRTTPKVGMGDVKIMKFGEYLRDLSAPLSVNTIRLNPLRGYSMAVIEPSI 124 Query: 123 VFIAVDNLFGGDGRFPTKV-EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 VF A+DN FGG GR K+ GR FT TE +I ML + +AW I + E+V Sbjct: 125 VFAALDNFFGGFGRGFDKLPPGRLFTPTETSIIKIMLDVLFGSLKEAWAPILAINCEHVN 184 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 SE+ +F I ND+VV + F ++G N++G ++ P++ ++P+R+LL + Sbjct: 185 SEINPQFAQIADE-NDLVVVSRFGADLGRNISGNIDLVYPYNSLKPIRDLLRSRVQTGDG 243 Query: 241 NE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDG 298 ++ D+ W L ++LE+ +I LS+ ++ GD++ K + +V+ Sbjct: 244 DDISDKEWSAELQSAAVDAELEVTVELGEIETTLSKFEAMSEGDIVYFSKSEHARVYVNS 303 Query: 299 VPVLTSQYGTLNGQYALRIEHLINPI 324 VPV + G Q A RI + P+ Sbjct: 304 VPVFDADVGANGSQMAARIIKPLAPL 329 >UniRef50_Q8D3E8 FliM protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3E8_WIGBR Length = 319 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 167/317 (52%), Gaps = 5/317 (1%) Query: 16 NGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRR 75 N D E+ +E + S S + N + + ++ L +N++F + + + N ++ Sbjct: 5 NYDVEINNEKKNNFSEISKNIFLNKNKSKECNKSIIEKLNNVNQKFTGYIKKEITNYIKE 64 Query: 76 SPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDG 135 DIT I Q Y +F ++ ++NLI + +++ + V I +D FGG G Sbjct: 65 PIDITSKEIYTQKYCDFIKDFNTLVSINLIKTNLFKNDLVIILTTEFVSIILDIFFGGTG 124 Query: 136 RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK-AINPLEVEYVRSEMQVKFTNITTS 194 + EF+ +E+R+I+ + KL + Y + K IN + +E V S+ ++ N Sbjct: 125 NSFGRKNLNEFSISEKRIIDILNKLIINCYQKSLKDNINSINLELVTSDTCIQLINF--D 182 Query: 195 PNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQN-WRDNLVRQ 253 N+ + + F+ NL F I +E L L N++ ++QN W++ LV + Sbjct: 183 KNEKIFISKFNFHYKNLKINFFIIFSTFSVEN-ENLFYEKKLSNNKEKEQNKWKNKLVNE 241 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQY 313 ++ S+L + FAD+S+ +S ++ LN G+++PI K ++ A+VD +PV + YG+LNG Y Sbjct: 242 IKSSKLLIQVKFADLSICVSDLINLNKGEIIPIVKTKKLTAYVDCIPVFSGSYGSLNGHY 301 Query: 314 ALRIEHLINPILNSLNE 330 ALR+E++IN +N +++ Sbjct: 302 ALRVENIINSYINKIDK 318 >UniRef50_C6N2P9 Flagellar motor switch protein FliM n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N2P9_9GAMM Length = 358 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 173/351 (49%), Gaps = 42/351 (11%) Query: 5 ILSQAEIDALLN-------GDS-EVKDEPTASVSG------------------------- 31 +LSQ EIDALL G++ E + + TA V Sbjct: 6 VLSQEEIDALLQSVDESSEGEAQEAETQETADVKSPRKKTPRAGKYAESESDSSIESTVV 65 Query: 32 --ESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPY 89 +S+++ + ++Q R+V+ +L L+ I +R R F ++ L + +IT + I + Sbjct: 66 FDDSEVKTLNFSSQERIVKGKLPVLDRIYDRAVRSFATDIYQLTAKDFEITQDQMLIIKH 125 Query: 90 HEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHT 149 +F +LP P+ +++ KPLRG G+++F + V+ VD FGG +F + + +FT T Sbjct: 126 RDFMESLPNPSLMSIYKFKPLRGKGIIMFDSTFVYDLVDYYFGGSTQFLAQKDRTDFTAT 185 Query: 150 EQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG 209 E RV+ + + + AWK I L++ E + NI P+++++ F ++ G Sbjct: 186 ELRVMEAVTTKLIANLTLAWKPIIQLDISKFNDETNPQLVNI-AEPDEMLLVVRFSLDFG 244 Query: 210 NLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQ---NWRDNLVRQVQHSQLELVANFA 266 TG+F LP++M+EP++E L L SR +D+ NW +L ++ +L + + A Sbjct: 245 KETGDFYFILPYTMVEPIKEQL---ELGASRPDDEIDPNWVKSLKEELMDVELVISSAMA 301 Query: 267 DISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 L ++ GD +P+E + + V+G P T+ GT N + AL+I Sbjct: 302 QTKSTLGTVMSWQAGDFIPMEMKEIVTLDVEGTPGYTATLGTANEKRALKI 352 >UniRef50_Q5ZUK6 Flagellar protein n=4 Tax=Legionella pneumophila RepID=Q5ZUK6_LEGPH Length = 355 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 170/350 (48%), Gaps = 37/350 (10%) Query: 5 ILSQAEIDALLNG-----DSEVKDEPTASVSGESDIRPYDPNTQR--------------- 44 +LSQ EIDALL+ D E DE +S +P D +Q Sbjct: 8 VLSQEEIDALLDSVDESIDDETNDEELSSRDQPVRKKPEDTTSQELNSNFDSDKKVAEEG 67 Query: 45 ----------RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 R+V+ +L L+ I +R R F +++L R +I + I + EF R Sbjct: 68 VKTLNFTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMR 127 Query: 95 NLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVI 154 +LP P+ + + KPLRG G+++F + V+ VD FGG+ +F + + +FT TE RV+ Sbjct: 128 SLPNPSLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVM 187 Query: 155 NRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGE 214 + K + A + I L+V E + NI P ++++ F + G TG Sbjct: 188 EVVTKKLVTNLIHACEPIIQLDVTKFNDETNPQLVNI-AEPEEMLLVARFVLNFGKETGA 246 Query: 215 FNICLPFSMIEPLRELLVNPPLENSRNEDQ---NWRDNLVRQVQHSQLELVANFADISLR 271 F LP+SM+EP+++ L L SR +D+ NW ++L ++ +L + A+ A+ Sbjct: 247 FYFILPYSMLEPIKQQL---ELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVST 303 Query: 272 LSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 L Q++ GD +P+E + + ++G P T+ G+ N + AL++ +I Sbjct: 304 LGQVMAWKVGDFVPLEINEEVTLDIEGTPSFTATLGSANEKRALKVIKII 353 >UniRef50_B8FTQ9 Flagellar motor switch protein FliM n=3 Tax=Clostridiales RepID=B8FTQ9_DESHD Length = 331 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 165/324 (50%), Gaps = 13/324 (4%) Query: 1 MGDSILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 MG+ +LSQ EIDALLN D +V E + + +R YD + ++++ +L+ I Sbjct: 1 MGE-VLSQDEIDALLNALSDGQVDAEEIKTTKVQKKVRVYDFRRPNKFSKDQIHSLQNIY 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E + R L L + V +I Y EF R+LP PT L+L L PL GT L+ Sbjct: 60 ENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYTLNPLEGTLLMEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 SP+L F +D L GG G+ K R+ T E+ +I+ + + +AW + E E Sbjct: 120 SPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIGEAWSEVISNEPE 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 Y+ E +FT I +PN++++ V++G + G N+CLP+ ++EP+ + L L + Sbjct: 178 YIVLETNPQFTQI-VAPNEMIILVTLEVQVGEMVGMVNMCLPYLVLEPVLDKLSTLFLFS 236 Query: 239 SRNE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHV 296 ++ + + + + R+++ +++++ + + +L+L PGDV+P+ + + Sbjct: 237 TQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVK----- 291 Query: 297 DGVPVLTSQYGTLNGQYALRIEHL 320 + +PV + G L EHL Sbjct: 292 EALPVYVGNFRKFKGIPGLHGEHL 315 >UniRef50_D2R066 Flagellar motor switch protein FliM n=4 Tax=Planctomycetaceae RepID=D2R066_9PLAN Length = 362 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 170/349 (48%), Gaps = 40/349 (11%) Query: 1 MGDSILSQAEIDALLNG-DSEVKDEPTASVSGES-------------DIRPYDPNTQRRV 46 M D +LSQAE+++LL+ ++ +A++S S + PYD RV Sbjct: 1 MADEVLSQAEVESLLSAMEASGPRTSSAAISTASVAPPSKGAIRTREKVTPYDFKRPERV 60 Query: 47 VRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIH 106 +E+++AL+ ++E F R+F L LLR ++ + ++ Y EF +L PT NL+ Sbjct: 61 GKEQMRALQSLHEGFGRNFGAALSALLRSIVEVKLTSVDQLTYSEFVFSLENPTCFNLLR 120 Query: 107 LKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYS 166 +PL G ++ +PS+++ +D L GG G+ V R T E R+++R+ L L+ Sbjct: 121 AEPLEGNLILDINPSILYPIIDRLLGG-GKEAGPVARRPLTEIELRLVSRITHLFLQELK 179 Query: 167 DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP 226 AW+ + PL++ R E + I PN++VV F + + ++ G N+C+PF+ IE Sbjct: 180 HAWEGVLPLKLSVDRVESNPQLVQI-VPPNEVVVLISFELTLNDVRGMINLCIPFNSIER 238 Query: 227 LRELLVNPPLENSRNEDQNWR------------DNLVRQVQHSQLELVANFADISLRLSQ 274 + S+ NW + +++ S++ELV A+ ++ Sbjct: 239 I----------GSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKVELVVTLAETTITTGD 288 Query: 275 ILKLNPGDVLPIEKPDR--IIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 ++ L GD++ +K R + V G+ + G L G A+RIE I Sbjct: 289 MIGLRVGDIITTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRIEQSI 337 >UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A358_NATTJ Length = 333 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 163/339 (48%), Gaps = 22/339 (6%) Query: 5 ILSQAEIDALLN----GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 +LSQ+EID LL+ GD V+D + ++PYD + +++++ L++INE Sbjct: 4 VLSQSEIDDLLSAISTGDLNVEDAKQQDT--QQKVKPYDFRRPAKFSKDQIRTLQMINEN 61 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FAR L LR +I + ++ Y EF R+L PT + + P+ G L+ +P Sbjct: 62 FARLLSTYLSAYLRSYVEIELASVDQVTYDEFMRSLTNPTIMGIFSAPPMEGKSLMEMNP 121 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 ++ F +D L GG G T E T E+ V ++ L+ +AWK + LE E+ Sbjct: 122 NIAFAVIDRLMGGPGE--TFESTGELTEIEEAVARKIFNRMLDSMLEAWKNVGELEPEFE 179 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-------VN 233 R E +FT I SPN+IV F V++G G FN+CLP+ +EP+ + L Sbjct: 180 RIENNPQFTQI-ISPNEIVAVVAFSVKVGEAEGLFNVCLPYIFLEPVIDRLSARFWFATG 238 Query: 234 PPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DR 291 + + E Q ++ L +Q+ + A A + + + L L GDV+ + KP Sbjct: 239 HQKKITEEESQALKNRL----HKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESE 294 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 I V + G++ + A++I ++ +SL E Sbjct: 295 IDLIVGKKTKFKGKPGSIKNKLAVQITQIVREGDDSLGE 333 >UniRef50_C1TKI5 Flagellar motor switch protein FliM n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKI5_9BACT Length = 334 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 160/323 (49%), Gaps = 9/323 (2%) Query: 1 MGDSILSQAEIDALLN--GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M +LSQ+EID+LL+ EV E + S E +++ YD + +++L+A+++I+ Sbjct: 1 MTPDVLSQSEIDSLLDVLTSGEVDFEEISQASAEKNVKGYDFRRPDKFSKDQLRAIQMIH 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E F+R L ++R V ++ Y EF R++ PT + ++ + PL G +V Sbjct: 61 ESFSRQLTTSLSTMVRSIVTCEVASVDQVAYEEFVRSMVQPTVMGVLEMYPLEGNAVVEM 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P+LVF +D L GG G K R+ T E VI R+ LE D+W + + Sbjct: 121 NPNLVFAIIDRLLGGKGEVFGK--PRDLTDIESTVIERVFMRMLELLEDSWSTVIDVRFR 178 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL-- 236 + E F I D+V+ V IG++ G ++C+P+ ++EP+ + L + Sbjct: 179 FDSMESNPFFVQICPG-TDMVLLVTLRVSIGDVEGMVSLCIPYFVMEPVMDKLSSQIWFA 237 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIA 294 +N+DQ+ R L + ++ + D L L +++L GDV+ ++ D + Sbjct: 238 STGKNKDQDHRGFLTASLGTVKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRV 297 Query: 295 HVDGVPVLTSQYGTLNGQYALRI 317 V T + GT++G+Y++ + Sbjct: 298 RVGSRIKFTGRPGTVDGRYSVEV 320 >UniRef50_B0THB4 Flagellar motor switch protein flim n=5 Tax=Clostridiales RepID=B0THB4_HELMI Length = 331 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 147/306 (48%), Gaps = 39/306 (12%) Query: 1 MGDSILSQAEIDALLNGDS-------EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQA 53 M D ILSQAEIDALL + +VKD+ T S IR YD + ++++ Sbjct: 1 MSD-ILSQAEIDALLAALASGQVTPEDVKDDLT------SKIRVYDFKRPNKFSKDQIHT 53 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 L++I E + R L LR I+V ++ Y EF R++P PT +N+ + PL G Sbjct: 54 LQVIYENYCRSLTTYLAANLRTLVQISVQSLDQLTYEEFIRSIPNPTIVNIFTMSPLNGN 113 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 G++ P++ F +D LFGG G P K+ G T EQ V R + L+ +++AW I Sbjct: 114 GIMEIHPNIAFAVIDRLFGGTGNPPDKIRG--LTEIEQSVFQRTTRRMLDSFTEAWDNIA 171 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN 233 ++ E +F I +P ++VV +IG++ G NICLP+ ++EP+ Sbjct: 172 QVKARLEMIETNPQFIQI-VAPTEMVVVITLACKIGDVEGMINICLPYILLEPII----- 225 Query: 234 PPLENSRNEDQNWRDNLVRQVQHSQLELVAN------------FADISLRLSQILKLNPG 281 S+ W N ++ QLE + N +L +S++L L G Sbjct: 226 -----SKLSAHFWFSNAAKERTTEQLEALRNRLERALVPITVLLGRTTLSVSELLDLQLG 280 Query: 282 DVLPIE 287 DV+ ++ Sbjct: 281 DVIQLD 286 >UniRef50_P23453 Flagellar motor switch protein fliM n=32 Tax=Bacillales RepID=FLIM_BACSU Length = 332 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 168/323 (52%), Gaps = 9/323 (2%) Query: 1 MGDSILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M +LSQ EIDALL+ S E+ E E ++ YD R ++++++L I+ Sbjct: 1 MSGEVLSQNEIDALLSAISTGEMDAEELKKEEKEKKVKVYDFKRALRFSKDQIRSLTRIH 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + FAR LR I+V ++ PY EF R++P T LNL + P+ G ++ Sbjct: 61 DNFARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEV 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P++ + +D + GG G KV+ T E ++I+ + + AL Y +AW++I +E E Sbjct: 121 NPTIAYTMMDRVMGGIGISHNKVDS--LTEIETKIISNLFENALGNYKEAWQSIADIEPE 178 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR-ELLVNPPLE 237 E+ +F + SPN+ VV + +IG ++G N+C+P ++EPL +L V+ ++ Sbjct: 179 MTEFEVNPQFVQM-VSPNETVVVISLNTQIGEISGVINLCIPHIVLEPLIPKLSVHYWMQ 237 Query: 238 NSRNEDQ-NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 + RNE + +L +++ +Q+ +VA L + + L L GD + ++K D + Sbjct: 238 SDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTV 297 Query: 295 HVDGVPVLTSQYGTLNGQYALRI 317 V P Q G +N + A++I Sbjct: 298 LVGDKPKFLGQAGRVNRKQAVQI 320 >UniRef50_C8WWF8 Flagellar motor switch protein FliM n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWF8_ALIAD Length = 331 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 94/322 (29%), Positives = 153/322 (47%), Gaps = 15/322 (4%) Query: 5 ILSQAEIDALLNGDSEVKDEPTAS--VSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 +LSQ+EIDALL + +P A + +R YD R ++ L+ L ++E F Sbjct: 4 VLSQSEIDALLYAIRTGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMHEHFC 63 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R L LR P I V ++ PY EF R++P T L + + PL G ++ +P + Sbjct: 64 RLLTSQLSGQLRSVPQIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEMNPQV 123 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 VF +D GGD P +V RE T E + R+ + ++AWK++ L+ ++V Sbjct: 124 VFAMLDKYMGGDSAGPYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQFVSL 181 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN-----PPLE 237 E +F +TT PN+ V+ V +G TG N+C+P IEP+ L N P + Sbjct: 182 ESNPQFLQLTT-PNETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMDPAFQ 240 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAH 295 + R + D L ++ +++ L + ++L L GD + + + D + + Sbjct: 241 SGRRQVN---DELRAKLLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVY 297 Query: 296 VDGVPVLTSQYGTLNGQYALRI 317 VDG P G N YA++I Sbjct: 298 VDGRPAFWGSVGKRNRVYAVKI 319 >UniRef50_C1SNF9 Flagellar motor switch protein FliM n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNF9_9BACT Length = 336 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 102/333 (30%), Positives = 168/333 (50%), Gaps = 17/333 (5%) Query: 1 MGDSILSQAEIDALLNG---DSEVKDEPTASVSG-ESDIRPYDPNTQRRVVRERLQALEI 56 M D ILSQ EIDALL+ D E+ DE + I YD RV +E+L+++ Sbjct: 1 MAD-ILSQEEIDALLSTVSTDEEIADEKVEQLDFVPKKISVYDFRRPDRVSKEQLRSIRN 59 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 ++++FAR+F L N LR DIT+ ++ Y EF +LP PT+ N+I + P+ G ++ Sbjct: 60 LHDKFARNFSSTLSNYLRTITDITLTSVDQMTYGEFLMSLPDPTSFNIISMIPMEGNAVL 119 Query: 117 VFSPSLVFIAVDNLFGGDGR--FPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 +PSLVF VD L GG G+ F T RE T EQ +++ +L L L+ + W+ I P Sbjct: 120 EINPSLVFPIVDKLLGGTGKPLFQT----RELTSLEQHIMDGILGLILKDLEEVWRQIIP 175 Query: 175 -LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP-LRELLV 232 + ++ SE I S N++V+ V+ G + G N+C+P ++EP L ++ Sbjct: 176 NIRLKKELSENSPHIIQI-VSQNEVVILVVCEVKFGEVLGMMNLCIPAIVLEPVLGKISS 234 Query: 233 NPPLENSRNEDQNWR-DNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE-KPD 290 + L ++ Q + D ++ + +++ L + +L L GD++ K D Sbjct: 235 SDWLIGAKKGLQGEKEDEIMHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQD 294 Query: 291 R-IIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 R + H + + GTL + A++I I Sbjct: 295 RPVEIHFNNKQKFLGEVGTLGVKKAVKITQFIT 327 >UniRef50_Q57511 Flagellar motor switch protein fliM n=33 Tax=Spirochaetales RepID=FLIM_BORBU Length = 352 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 21/297 (7%) Query: 6 LSQAEIDALLNG------------DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQA 53 LSQ +ID+LL S V PT + ++ YD + +E+++ Sbjct: 8 LSQDDIDSLLESINSSESLSLDESLSNVISSPTGK---KQKVKVYDFKRPDKFSKEQVRT 64 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 + +E FAR+ L LLR+ + V ++ Y EF R++P PT L +I++ PL+G+ Sbjct: 65 VSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLKGS 124 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 + P++ F VD LFGGDG K + R+ T EQ V+ ++ L +AW + Sbjct: 125 AIFEVDPTIAFAIVDRLFGGDGD-TIKDKSRDLTEIEQSVMESVIIRILANMREAWSQVV 183 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN 233 L + E+ +F I P ++++ V+IG + G N CLP+ IEP+ L Sbjct: 184 DLRPRFGHIEVNPQFAQI-VPPTEMIILVTLEVKIGKVEGLMNFCLPYITIEPIVSKLST 242 Query: 234 ---PPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 L +N D L +++++ + LVA ++ L++ +IL L+ GDVL +E Sbjct: 243 RYWHSLIGVGTTSENL-DALREKLENTAMPLVAEIGEVKLKVREILSLDKGDVLNLE 298 >UniRef50_C8WYW2 Flagellar motor switch protein FliM n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYW2_DESRD Length = 336 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 166/324 (51%), Gaps = 12/324 (3%) Query: 3 DSILSQAEIDALL----NGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 D +L+Q EI+ LL +G+ ++ E S D++ D + R R+ +II Sbjct: 2 DKLLTQDEINDLLEAIESGEVDIDAEADEPSSSNRDLQRLDLFRGQTSARWRVANFDIIL 61 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + FAR+ + + N L+RS + AI + + F ++L + + ++ +PLR GL++F Sbjct: 62 DAFARNSGISMANRLKRSVSVKRVAIETETFENFLQDLQEQSLIGIVSFEPLRSGGLLIF 121 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 L F ++ +FGG+ + RE T E V+ +++ + + + A++ ++ L+ Sbjct: 122 DCPLSFCLLEVMFGGNSEAGISIPDRELTSIEINVLKNVMRDSCQDWEAAFEPLDELKTN 181 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 V++E+ + +I SP V+ + F V+ GN+ G+ ++ +PF IEP +E L N + Sbjct: 182 LVQAEINPRLVSI-VSPETEVLVSRFSVKAGNIFGQMSLVIPFFAIEPYKEKLKNRMFDV 240 Query: 239 -SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI----EKPDRII 293 + + Q W + ++ + E+ A FA SL + +IL L GD++ + + R++ Sbjct: 241 ITVSGGQAWTKTIHDEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQRVL 300 Query: 294 AHVDGVPVLTSQYGTLNGQYALRI 317 V+ P + GT G+ A+RI Sbjct: 301 --VEQKPKFQAVAGTRKGKKAVRI 322 >UniRef50_A6Q2L2 Flagellar motor switch protein FliM n=4 Tax=Bacteria RepID=A6Q2L2_NITSB Length = 326 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 155/319 (48%), Gaps = 10/319 (3%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARH 64 LSQ EIDALL GD ++E + + SDIRP+D + + + LE+I ER+ + Sbjct: 6 FLSQEEIDALLGGDGSEQEEESGTEEL-SDIRPFDFDELESIKKGGFPGLELIYERWVKL 64 Query: 65 FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVF 124 FR + +L + ++ +I I ++ F N+P+P++ ++PL+ T L+V LVF Sbjct: 65 FREEVRKVLPKINMVSKESIYITRFNNFMFNIPMPSSYTTFTMRPLKETALLVIDSRLVF 124 Query: 125 IAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184 + +FGG + P KVEGREFT E VI + +ALE + + A+ P++VE E+ Sbjct: 125 TVISVMFGGPAK-PFKVEGREFTKLETYVIKDFIDIALESLQEVFSAVYPVDVEKRSIEL 183 Query: 185 QVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244 I TS N+ V+ + V+I C P M P++E++ + E D Sbjct: 184 NPALARI-TSGNEKVIISECIVDIDGFEAPIYFCFPHGMFLPIKEIIYS---EFQGEIDP 239 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD--VLPIEKPDRIIAHVDGVPVL 302 W+ + + + +E+ + + +L+ G +L IEK + + Sbjct: 240 VWKRRVNEILLQTNVEVALELPKQTYLMRDVLQWKEGMELILDIEKEEDAYLRISDKYKF 299 Query: 303 TSQYGTLNGQYA--LRIEH 319 + G + +YA L+ EH Sbjct: 300 RCKVGKIKEKYAALLKNEH 318 >UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ6_HALOH Length = 334 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/328 (28%), Positives = 165/328 (50%), Gaps = 10/328 (3%) Query: 1 MGDSILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D +LSQ+EID+LL+ S +V E + E ++ YD ++ +E+++ LE+I+ Sbjct: 1 MAD-VLSQSEIDSLLSALSSGDVDVEEIKKETEEEKVKVYDFRRPDKLSKEQMRTLEMIH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E FAR L LR D V +I Y EF R+LP PT + + ++P G + Sbjct: 60 ENFARILTTTLSTQLRSRVDFEVASIEQLTYEEFIRSLPEPTIIGISEMEPFNGQFIFEI 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P + F +D LFGG G +V R +T E+ V+ +++ L G +AW+ I ++ Sbjct: 120 NPDIGFAIIDRLFGGMGNPLDRV--RTYTDIEKVVLRKVISWFLSGLPEAWENIIRVKPR 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR-ELLVNPPLE 237 E +FT + S ND+ + +I N G N+C+P+ MIEP+ +L Sbjct: 178 LREIESNPQFTQVVPS-NDMTILITMSAKIANSEGLVNVCIPYIMIEPIVPQLNAQQWFS 236 Query: 238 NSRNEDQNWR-DNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 N+R E + + ++++ + LE++A L ++ +L L PGDV+ ++K +++ Sbjct: 237 NTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVDI 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + G N A++I +I+ Sbjct: 297 RIGKNVKFQGVAGVSNKHMAVKITDVIS 324 >UniRef50_A0Y177 Flagellar motor switch protein M n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y177_9GAMM Length = 230 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 104/183 (56%), Gaps = 1/183 (0%) Query: 140 KVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIV 199 K++ EFT TE+R++ +LK+ E Y +AW + + EY+ SE+ NI SP ++V Sbjct: 7 KLKAGEFTPTERRIVQMLLKIIFEDYKEAWAPVMDVSFEYLDSEVNPAMANIV-SPTEVV 65 Query: 200 VNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQL 259 V + FH+E+ G+F+I LP+SM+EP+RELL ++ + D W L ++ ++ Sbjct: 66 VISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEV 125 Query: 260 ELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 ++ ++ L L QI++L GD++P+E P+ I V+ +P ++ G AL+I Sbjct: 126 DMSTQLLEVDLTLQQIMELKAGDIIPVEMPEHITVFVEELPTFRAKMGRSRDNVALQISE 185 Query: 320 LIN 322 I Sbjct: 186 KIK 188 >UniRef50_Q5FT23 Flagellar motor switch protein FliM n=1 Tax=Gluconobacter oxydans RepID=Q5FT23_GLUOX Length = 343 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 93/329 (28%), Positives = 158/329 (48%), Gaps = 17/329 (5%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQAEID+ DS V A SG + + V ERL LE++ +RF Sbjct: 11 DHVLSQAEIDSFFGKDSVVT--GAADSSGIERVV-----STSGVSSERLPMLEVVFDRFT 63 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R L N + + ++ + Q + ++ N+P + + G+VV S SL Sbjct: 64 RILTTSLRNFTSDNVEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSL 123 Query: 123 VFIAVDNLFGGDGRF-------PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 ++ VD L GG R ++ GR T E+ +I M+++ L+ ++ + + Sbjct: 124 IYSIVDALLGGHVRGDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFSPLCAV 183 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + R EM +F I + N VV F +++ G+ +I LP + +EP+R++L+ Sbjct: 184 NFHFERLEMNSRFAMICRAGNG-VVTARFGIDMEGRGGDVDIVLPHATLEPVRDILLQQF 242 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI-EKPDRIIA 294 + D W ++L R++ + L L A + ++ L I+KL PGD L + KPD ++ Sbjct: 243 MGEKFGHDGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVS 302 Query: 295 HVDGVPVL-TSQYGTLNGQYALRIEHLIN 322 G VL T + G GQ A++IE ++N Sbjct: 303 LRCGEHVLFTGRVGRKQGQVAVKIEDVLN 331 >UniRef50_A9KNE7 Flagellar motor switch protein FliM n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KNE7_CLOPH Length = 325 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/326 (26%), Positives = 161/326 (49%), Gaps = 9/326 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MGD +LSQ+EID LL S + D SGE ++ YD + + +E L+ L+II E Sbjct: 1 MGD-VLSQSEIDNLLAALSSGELDADEFRDSGEKAVKNYDFHRPSKFSKEHLRTLDIIFE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 + R L LR++ + V Y EF L P L +I PL G ++ + Sbjct: 60 HYGRLLSTHLPAYLRKNVQVEVINSEAVVYQEFTNALSNPVLLGIIDFAPLEGNIIIELA 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 ++ + VD + GG G P + + R+F+ E +I R+ + ++ W + L Sbjct: 120 ENVGYAIVDRMLGGSGN-PLE-KSRDFSEIELVIIERIFTVMTNILAEPWANVVKLNPRL 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +R E +F I SP+D+ +++IGN+ G N+CLP++ +E + + L ++ Sbjct: 178 IRIETNSQFAQI-ISPSDMASIVTLNIKIGNIEGMMNVCLPYACLEVIIDKLNTKYWYST 236 Query: 240 RNE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAH 295 E D N+++ + + +++ + A S+ L++++ + GD++ +++ D + + Sbjct: 237 MQEKGDSNYQEFIETAISRARIPVKAVLGKSSISLNELINMQKGDIIKLDRKIDDELSVY 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLI 321 V + T+ G + YA++I +I Sbjct: 297 VGNIKKFTALPGASSDSYAVKISTII 322 >UniRef50_B3EAW6 Flagellar motor switch protein FliM n=9 Tax=Desulfuromonadales RepID=B3EAW6_GEOLS Length = 331 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 150/324 (46%), Gaps = 8/324 (2%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVS-GESDIRPYDP-NTQRRVVRERLQALEIINER 60 + IL++AEI+ALLN + + EP +S E YD NT+ R + L+I+ + Sbjct: 2 EKILTKAEIEALLNAVFDGRIEPEKELSKSEGTAVSYDLFNTE--AYRGFVPNLDIVYDG 59 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 F R R+ L N LR+ +I R + +F + LP P + + L PL+G L+ Sbjct: 60 FIRFNRITLSNRLRKVVEIKKVGARSYKFDDFLQTLPSPVCMAIFKLDPLKGAALIAMDS 119 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 SL F VD++ GG R + R FT E R++ +L L +W + P ++ + Sbjct: 120 SLAFAIVDSVLGGTSRTALAL-NRLFTTLELRLVEMVLADVLADLEKSWAPLYPAKLSLL 178 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 R EM + I P VV V I G +P IEP+R+ L + Sbjct: 179 RMEMNPRLVTI-VPPEYQVVTMTVKVHIEENVGTMIFVVPIMTIEPIRDKLKEGMQFDLM 237 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDG 298 D W L ++ + +EL + ++ L ++L L GD + ++KP ++ V+G Sbjct: 238 AIDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELLVKVEG 297 Query: 299 VPVLTSQYGTLNGQYALRIEHLIN 322 VP G +G A++I +I+ Sbjct: 298 VPKYQGIPGIRHGNKAMQISDIIS 321 >UniRef50_Q30SP5 Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM n=48 Tax=Epsilonproteobacteria RepID=Q30SP5_SULDN Length = 372 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 163/333 (48%), Gaps = 23/333 (6%) Query: 5 ILSQAEIDALLN------GDSEVKDE-PTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 ILSQ EIDALL+ G ++ DE + S + + YD RV +E+L+A + I Sbjct: 4 ILSQEEIDALLDVVDDEDGGGDLFDEMGSDSHTSNRQVTLYDFKRPNRVSKEQLRAFKGI 63 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 +++ AR + +++R +I + ++ Y EF +LP PT+ N+ +KPL G+G++ Sbjct: 64 HDKMARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLEGSGVIE 123 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 +PS+ F +D L GG G P REF+ E + +L++ + DAW + + Sbjct: 124 INPSIAFPMLDRLLGGKGE-PFDA-SREFSDIELSLFETILRVMMSTLKDAWGPVMEIFP 181 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL------RELL 231 E I + N+IVV + IG +G NIC P +EP+ R+L+ Sbjct: 182 NIESKESSPNVVQI-VAQNEIVVMVVMEIIIGQSSGMMNICYPVIALEPVLPKLASRDLM 240 Query: 232 VNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP-- 289 +N E S + +N +++ +E + A+++LR +L L GD++ + P Sbjct: 241 LN---ETSTKKSRNTELHVLLGGAKVGIEAMLGNAELTLR--DVLDLQAGDIVRLTSPAD 295 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 D + VDG + G + ++++ +I+ Sbjct: 296 DIVTICVDGKDRFRGKIGLRRFRKSVQVTEIID 328 >UniRef50_A8UVU1 Flagellar motor switch protein FliM n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVU1_9AQUI Length = 322 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/329 (25%), Positives = 160/329 (48%), Gaps = 28/329 (8%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 + LSQ EID LL + ++E V +P+D N R+ RL LE + R+ Sbjct: 4 EDFLSQDEIDMLLQSLGKEEEEAEEEVK----YKPFDINELERISPTRLIKLEQVINRWI 59 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 L ++ +I++ I+ + +F +P+P + +++++ L G +V L Sbjct: 60 ASATAELRGIIFNLDNISLSEIKTEKISDFVLKIPLPAAIAVLNVEALNGRLYMVLDTRL 119 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 ++ + +FGG + P KVEG+ FT EQ++IN ++++ + + AW VE +R Sbjct: 120 IYTIISIIFGGPAQ-PYKVEGKSFTKFEQKIINNLVEVLVRHLNTAW-------VELIR- 170 Query: 183 EMQVKFTN--------ITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 E +V+F IT S N+IV+ VEI G + +P I+P++++ Sbjct: 171 EGEVQFVGIEDNPRRLITISRNEIVIVITLEVEIEGFKGYVYLAIPMKTIDPIKDI---- 226 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRI 292 L + E ++RD ++ + + + L A + + + ++L++ GD +P++ D I Sbjct: 227 -LRTADTESGDFRDVILSNLMGTPVLLEAILPTLVMNVHELLEMKEGDFIPLDPRATDSI 285 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 V GVP+ G G+ A++I+ + Sbjct: 286 TVKVAGVPMFKGILGESAGRKAVKIKSFV 314 >UniRef50_B0P9Y0 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9Y0_9FIRM Length = 329 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/317 (27%), Positives = 154/317 (48%), Gaps = 26/317 (8%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LSQA+IDALL S + +V + I+ YD + ++ +E+L+A++ ++E F+R Sbjct: 5 LSQAQIDALLKKMSSGE----VAVEEKQTIKEYDFKSPKKFTKEQLKAMDGLHETFSRLL 60 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKP-----LRGTGLVVFSP 120 L +LR D+ V I + Y+E+ LP + ++ + P GT ++ S Sbjct: 61 SSYLSGILRIGCDVQVLQIDEERYYEYNNALPDTALIGIVGMDPEGEDYSEGTMIIDVST 120 Query: 121 SLVFIAVDNLFGGDG---RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 ++ F VD L GG G F R++T E +I+ + K + D+WK N +EV Sbjct: 121 TMGFYLVDRLLGGSGDDFNFT-----RDYTEIEMAIIHTIFKEIVGKLEDSWK--NSIEV 173 Query: 178 EYVRSEMQVKFTNITT-SPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + ++ + +P D V+ +++ G L +IC+P +E + + Sbjct: 174 KMTLDSIETNSRLLQIFAPEDTVIIVVINIKAGKLNATMSICMPADNMEEIIDKFSMKYS 233 Query: 237 ENSRNED----QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--D 290 +++R D Q ++ L+R V + L + A F + L IL+L P D++P+ K D Sbjct: 234 KSNRRTDPEKEQMRKEVLLRGVCDTDLPIKATFDQFKMDLKDILQLQPSDIIPLNKKITD 293 Query: 291 RIIAHVDGVPVLTSQYG 307 I +DG+P T++ G Sbjct: 294 DIQVTLDGLPWFTAKLG 310 >UniRef50_B9KJD8 Flagellar switch protein n=8 Tax=Rhodobacterales RepID=B9KJD8_RHOSK Length = 323 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 150/317 (47%), Gaps = 13/317 (4%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS E+ AL+ E + + S+ ++RPY AL IINERF R Sbjct: 8 LSSKEVAALVGNLMEASE--STSLENGLEVRPYAFGENELNQLGDYHALRIINERFCRTA 65 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R +LR P I+ ++ + ++ + ++ ++ LRG ++V P + + Sbjct: 66 RDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVIPPPFISL 125 Query: 126 AVDNLFGGDGR-FPTKVEGREFTHTEQRVINRM---LKLALEGYSDAWKAINPLEVEYVR 181 D+ +GG R PT EFT TE+RVI + L +AL+ AW+ + L V Sbjct: 126 LTDSYYGGQIRHVPTT--RTEFTATEERVIELVTDRLNVALQV---AWRDLMALTFTVVS 180 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPLENSR 240 E ++F + D+VVN F V++ N F+I P ++P+ L + + Sbjct: 181 REESMQFASFVDG-EDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQLRSRMQSDFV 239 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 ++D++WR+ L R + L L A + + L Q++++ PGDVLP+ + + V+G P Sbjct: 240 DDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTEAVSLLVEGQP 299 Query: 301 VLTSQYGTLNGQYALRI 317 + + G GQ AL + Sbjct: 300 IFEAAPGERGGQAALNL 316 >UniRef50_A6TKX0 Flagellar motor switch protein FliM n=4 Tax=Clostridia RepID=A6TKX0_ALKMQ Length = 331 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 146/289 (50%), Gaps = 7/289 (2%) Query: 5 ILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 +LSQ EID L EV+ + E I+ YD + +++ +++L+ L+II++ F+ Sbjct: 4 VLSQNEIDDLFQALNSGEVEIDEMKDEKIEKKIKSYDFKSPKKLAKDQLRTLQIIHDNFS 63 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 L LR V + Y+EF+ ++ P L++I+ PL G +V SPS+ Sbjct: 64 GMLNTFLAGYLRTYVQAEVLTVEELSYYEFSNSVVNPAVLSIINFTPLEGQIIVDISPSI 123 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 F ++ + GG G+ ++ R FT E +I +++ + D W+ + L+ + + Sbjct: 124 SFTLIERILGGMGKETEEI--RPFTEIETTLIKNLMRQVINLMIDPWENVIELQPKLDKI 181 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242 E +F I SPND V +++IG++ G NIC+P +IEP+ + L ++ ++ Sbjct: 182 ETNSQFAQI-VSPNDTVALITLNLKIGDVEGMMNICIPHIVIEPILDKLSTKLWFSNSSK 240 Query: 243 DQNWRDN--LVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP 289 RD L ++V+ S +++ A + + L+L GDV+ ++ P Sbjct: 241 PVTERDKKALQKRVEKSAVDITAQLGSTCVTVKDFLELQMGDVIMLDNP 289 >UniRef50_Q3ADB8 Flagellar motor switch protein FliM n=6 Tax=Clostridia RepID=Q3ADB8_CARHZ Length = 335 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 140/292 (47%), Gaps = 14/292 (4%) Query: 1 MGDS--ILSQAEIDALLNG-DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 +GDS ILSQ EID LL S DE T E R YD + +E L+ L +I Sbjct: 4 LGDSKEILSQEEIDRLLAALASGNIDEVTEKKKEEIRYRKYDFRRPNKFSKENLRTLHLI 63 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 ++ +AR L LR + + V ++ Y +F ++P PT + L PL+G+ ++ Sbjct: 64 HDNYARLISNFLTGYLRTNISVKVASVDQATYEDFLVSVPTPTLITTFKLHPLKGSMVME 123 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 + +F + LFGG G P +V RE T E VI ++ LE + AW I +E Sbjct: 124 TNLQFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLAQAWAEIIKVEP 181 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP-LRELLVNPPL 236 E E + + SPN+IV F EI G N+CLPF +++P L +L + Sbjct: 182 EIEALENNPRLHQV-LSPNEIVAIITFTTEILGNNGLINLCLPFEVLDPLLAKLSASYWF 240 Query: 237 ENSRNEDQNWRDNLVRQVQ----HSQLELVANFADISLRLSQILKLNPGDVL 284 ++ D R+ R ++ S+LE+ A LR+ + LK+ GD++ Sbjct: 241 SHATAAD---REAFARHMEGFLAESELEVSAILGGTELRVREFLKIEVGDIV 289 >UniRef50_C4Z5H1 Flagellar motor switch protein FliM n=7 Tax=Bacteria RepID=C4Z5H1_EUBE2 Length = 327 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/326 (26%), Positives = 153/326 (46%), Gaps = 9/326 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MG+ +LSQ+EID LL S + D + E ++ YD + +E L+ LEII E Sbjct: 1 MGE-VLSQSEIDNLLKALSSGELDVDEMKNTEEKQVKNYDFARPSKFSKEHLRTLEIIFE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F R L LR+S + V + Y EF+ L P L ++ ++PL G ++ + Sbjct: 60 HFGRLLATNLPAYLRKSVSVDVVNSEVVIYSEFSNALSNPVLLGVVGMQPLSGNIIMEMA 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 +L F VD L GG G K R+F+ E ++ R+ + + + W+ + + Sbjct: 120 SNLGFAIVDRLLGGAGNSLDK--ERDFSEIELSILERIFTVCVNLMQEPWENVVKVNPRL 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-VNPPLEN 238 R E +F I SP++ + +++IG++ G NICLPF+ +EP+ + L N Sbjct: 178 ERIETNSQFAQI-ISPSETIAIVTINLKIGDVEGLVNICLPFATLEPVMDKLNTKYWFSN 236 Query: 239 SRNEDQN-WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAH 295 + +D N + D + + + + + A + +S L GD++ I+K + Sbjct: 237 MQEKDTNTYEDAIETVIDKAMIPVKAVLGTSKISVSDFANLQIGDIIRIDKKVDQELEVF 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLI 321 V + + G +YA+R+ +I Sbjct: 297 VGNIKKFKALPGYYEDKYAVRVTEVI 322 >UniRef50_A9HHK3 Flagellar motor switch protein FliM n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HHK3_GLUDA Length = 395 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 158/339 (46%), Gaps = 20/339 (5%) Query: 1 MGDSILSQAEIDALLN---GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 MG +L Q+EID+LL G +K+E ++ Y ERL LEI+ Sbjct: 52 MGGHVLDQSEIDSLLGNAFGGLPIKEESGLERVIKAGFVAY----------ERLPMLEIV 101 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 +R R L + + +IT+ +R + ++ +P + + GL+V Sbjct: 102 FDRLVRMLSSTLRSFTNDNVEITIDGMRSMSFGDYMNAVPSSSLFAVFKAVQWENYGLIV 161 Query: 118 FSPSLVFIAVDNLFGG-DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 +L + +D L GG G VE R T E+ +I +++ L L S A+ + ++ Sbjct: 162 IDSALSYSIIDILMGGPRGVGYAGVEARPHTAIERALIEKLVTLTLNDLSTAFNPVCTID 221 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + + R E+ +F I + N +V+ T H+++ + +G ++ +P+ +EP+R+ L + Sbjct: 222 LTFERLEVSARFAAIARASNAVVM-TKLHIDMEDRSGSLDLIIPYVTLEPVRDQLSQQFM 280 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHV 296 D W +LV ++ + +++ A F + ++ LS++L L PG ++ + HV Sbjct: 281 GERFGRDSKWEGHLVSEILETDIQVSAVFEEKTILLSEVLGLRPGMLISFPHQNGTPIHV 340 Query: 297 ----DGVPVLTSQYGTLNGQYALRIEH-LINPILNSLNE 330 P+ + G L + A++IE L+ P +NE Sbjct: 341 RLQCGQTPLFEGRLGKLQDKAAVKIEKRLVPPAGPHMNE 379 >UniRef50_A6BA62 Flagellar motor switch protein FliM n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BA62_VIBPA Length = 168 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 81/127 (63%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARH 64 +LSQ EIDALL+G +V D + +D ++Q R+VR R+ LE+INERFARH Sbjct: 4 LLSQDEIDALLHGVDDVDDIDEPLDNDTEGAVSFDFSSQDRIVRGRMPTLELINERFARH 63 Query: 65 FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVF 124 R+ LFN+LR++ ++++ +++ + E+ L VPT+LN++ +PL+GT L+ LVF Sbjct: 64 MRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVF 123 Query: 125 IAVDNLF 131 I VD Sbjct: 124 ILVDKFL 130 >UniRef50_C0GJF2 Flagellar motor switch protein FliM n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF2_9FIRM Length = 325 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/323 (26%), Positives = 155/323 (47%), Gaps = 16/323 (4%) Query: 5 ILSQAEIDALLNGDSE---VKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 +LSQ EID+L++ S ++EP S ++ ++ YD + +++++ L+I++E F Sbjct: 4 VLSQNEIDSLIHALSTGEIAEEEPQTS---DTPVQVYDFRRPNKFSKDQMRTLQIVHENF 60 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR L LR +T+ ++ + EF +LP PT +++ G+ ++ +P Sbjct: 61 ARILSNFLTAYLRTPVQVTLASVSQVTFEEFIFSLPTPTLMSIFKASDNMGSAMLETNPQ 120 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 VF +D LFGG+G+ P ++ RE T E V+ R++ LE AW+ IN L + Sbjct: 121 FVFPIIDLLFGGEGKTPKQI--RELTEIELTVMRRIVNKILENLRYAWEDINELSPQIEN 178 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP-LRELLVNPPLENSR 240 + +F + S N+ V +I + G N+C PF +EP + L NS+ Sbjct: 179 MDTNPQFNQMIAS-NETVALLTLSTKIRDSEGLINVCFPFITLEPVIANLTAQHWFSNSQ 237 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK----PDRIIAHV 296 L ++ +EL A ++++ L+ GDV+ +++ P ++ V Sbjct: 238 ISGGVHSRMLETGLEDVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLL--V 295 Query: 297 DGVPVLTSQYGTLNGQYALRIEH 319 + P+ Q G G+ A++ H Sbjct: 296 EEKPMFKIQAGVSKGRRAVQFLH 318 >UniRef50_B5Y7E9 Flagellar motor switch protein FliM n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7E9_COPPD Length = 326 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 144/286 (50%), Gaps = 11/286 (3%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LSQ EID LL+ + E + E +R YD ++ +E+L+ +++++E FAR Sbjct: 5 LSQEEIDTLLSAIKAGQAELVQT--KEKVVRKYDFRRPDKLSKEQLRTIQMLHENFARGA 62 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL--V 123 L LR + I++ ++ Y E+ R+L PT ++L P+ V+F SL V Sbjct: 63 STELAGYLRSAMSISIVSVDQVTYQEYIRSLSDPT---FMYLVPIIDVTSVIFEMSLDFV 119 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 F +D L GG G+ P + E RE T E ++NR++ + L+ + +AWK I + E Sbjct: 120 FAIIDKLLGGPGK-PLR-EVRELTSVEATLMNRVMDVYLKHWLEAWKPIVQWNLGKPTLE 177 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP-LRELLVNPPLENSRNE 242 F I +D+V+ + ++G T IC+P+ +E ++ L + S+ Sbjct: 178 YSPGFVQIMPG-SDVVIVITYEEKLGEKTAIGTICVPYMAMEGFVQNLTAHRWFGVSKPT 236 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 +W+ L+ ++ +E+ A + S+ + +ILK N GDV+ + + Sbjct: 237 PDDWKTTLMEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSR 282 >UniRef50_Q2RZE2 Flagellar motor switch protein FliM n=2 Tax=Rhodothermaceae RepID=Q2RZE2_SALRD Length = 372 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 16/331 (4%) Query: 6 LSQAEIDALL-NGDSEVKDEPTASVSGESDIR--------PYDPNTQRRVVRERLQALEI 56 LSQ EID LL + D+E ++ PT E D + PY+ R + + + L Sbjct: 5 LSQEEIDVLLGDADAEEQEVPTGGAGDEQDAQAEKEKQAQPYNFKRPRLFSQTQKRILNQ 64 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 ++E FAR + L LR DI++ A+ Y EF + P+ L ++ L + Sbjct: 65 VHESFARDLSVYLSAQLRTIVDISLTAVDQVLYSEFVMSSAPPSALYVLREDELEYRSIF 124 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 P LV ++ L GGDG+ E RE + EQR+++R++K A ++W+ L Sbjct: 125 EIDPRLVVYTIEKLMGGDGQLMD--ESREVSPIEQRIMSRVMKRAYRKLEESWRKAYELS 182 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL--RELLVNP 234 VE V E +F I + +V + F V + + NIC P+ M+E + R + Sbjct: 183 VEEVAFESNAEFVQIIPAAEPALVAS-FDVRVYDEPSFINICYPYLMLEQMLGRSGMEQW 241 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRI 292 ++ + RD ++ +++ L A L ++++ +L GDV+P+ E D I Sbjct: 242 ISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPI 301 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 V+G + G Q ALRI +P Sbjct: 302 KVFVNGEQKFEAVPGRSGRQRALRITAAESP 332 >UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clostridia RepID=B0K1R9_THEPX Length = 332 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/330 (25%), Positives = 155/330 (46%), Gaps = 22/330 (6%) Query: 5 ILSQAEIDALL----NGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 ILSQ+EID LL +G +V++ + IR YD + +E+L+ L++I E Sbjct: 4 ILSQSEIDELLKAFSSGGLDVQEIEEVEETKSKKIRNYDFRRPNKFSKEQLRTLQMIFEN 63 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 +R L LR ++TV ++ Y+EF+ +L P + +I PL G L+ F+ Sbjct: 64 LSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIIDAAPLEGLFLLEFNN 123 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 + + +D + GG G+ ++ R++T E ++ +++K L + + W I + + Sbjct: 124 NTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQMLSLFKEPWSNILDINPSLI 181 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 R E +F I SPN+ V ++I G N C+P +EP+ L +S Sbjct: 182 RVETNSQFAQI-ISPNETVALCTLSIKINETEGIMNFCMPHLTLEPIVPKLTTKFWFSSM 240 Query: 241 NEDQNWRDNLVR-QVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK----PDRII-- 293 +++ L++ ++ + + L A ++ + + L GD++ ++K P II Sbjct: 241 KKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIID 300 Query: 294 --AHVDGVPVLTSQYGTLNGQYALRIEHLI 321 G+P G N +Y++RI +I Sbjct: 301 KKVKFRGIP------GIKNNKYSVRITEVI 324 >UniRef50_A5D0K2 Flagellar motor switch protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0K2_PELTS Length = 330 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 144/293 (49%), Gaps = 16/293 (5%) Query: 5 ILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 +LSQ+EIDALL+ S EVK E + + + YD + +++L+ L++++ FA Sbjct: 3 VLSQSEIDALLSALSTGEVKIEELKETQQQVEYKRYDFRRPNKFSKDQLRTLQVLHGVFA 62 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R L LR + I V ++ Y +F R++P PT L + L PL+GT + Sbjct: 63 RLLSNFLTGYLRSNVQIEVASVDQLTYEDFIRSIPTPTVLAIFSLNPLKGTAIAQLDSMF 122 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE--VEYV 180 +F +D FGG+G P V RE T E V+ ++ LE + AWK I +E +E V Sbjct: 123 LFPIIDLFFGGNGEAPKAV--RELTDIELSVVRKISMKILEHLALAWKDIVHVEPVIETV 180 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRELLVNP----P 235 + + + S ++IV ++G + G N+CLPF +++P+ L P Sbjct: 181 ETN---PYLHQIFSFSEIVALITLTTQVGESARGFINLCLPFPLLDPVVSQLSFQRRFGP 237 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 ++ N+++ R L + ++EL + + L+L GDVL ++K Sbjct: 238 QTSAVNDEEVKR--LQYWLGFPKIELTVLAGQTQITVDDFLQLQEGDVLILDK 288 >UniRef50_A5V6A6 Flagellar motor switch protein FliM n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V6A6_SPHWW Length = 331 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/328 (25%), Positives = 148/328 (45%), Gaps = 7/328 (2%) Query: 4 SILSQAEIDALLNGDSEVKDEPTA----SVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 S LS E+ AL++ S++ + V D+ PY ++ L LE +NE Sbjct: 6 SSLSGDEVAALMDELSDISFDQEGVEPPKVRQVRDVEPYALGQRKDRPVAHLAHLERMNE 65 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R AR R + + + + + + + E+ RN +L+L ++P++G +V Sbjct: 66 RIARRLRDVIEPIAQTRSKVDPIPLETRRFDEWQRNQADHMSLSLFRVRPVKGMMMVAVE 125 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 PS V VD +GG G T +G EFT +EQR+ R+ +E + W PL+ ++ Sbjct: 126 PSFVTNMVDAFYGGTGNGLT-TKGGEFTPSEQRLQRRLTDAIVEVLTRVWSDTFPLQFDF 184 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRELLVNPPLEN 238 E F N+ + +VV + F ++ G + + I P S+++P+ + + Sbjct: 185 STHETNAAFANMVRADEPVVVQS-FTIKPGMSRSTRVEILYPLSLLQPIEDQIAARTQAG 243 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDG 298 + +D W+ L+ + L + + A + ++Q+L L PGDV+P+ + V Sbjct: 244 ADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDVIPVNLSQTVPLLVGN 303 Query: 299 VPVLTSQYGTLNGQYALRIEHLINPILN 326 G +G+ AL IE L +L Sbjct: 304 RRFAEGTIGEQDGRAALMIESLNKEVLK 331 >UniRef50_A6M1D3 Flagellar motor switch protein FliM n=26 Tax=Clostridium RepID=A6M1D3_CLOB8 Length = 332 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 12/293 (4%) Query: 1 MGDSILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D +LSQ EIDALL+ S E+ E + ++ YD + ++ +E ++ LE+I+ Sbjct: 1 MAD-VLSQNEIDALLSALSTGELGSEDVGKDEEKHKVKLYDFRSPQKFSKEHIRTLELIH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + +AR L R++ + + + Y EF ++ PT + + + PL GT + Sbjct: 60 DNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITIFKMAPLSGTIIFET 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL--E 176 +P +D L GG G K + +EFT ++ ++ ++ + AW ++ + E Sbjct: 120 NPQFSLQVIDVLLGGKG--DRKAQAKEFTDIDKNIMRQVTTGMISNLKLAWDSVLEVEPE 177 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP-LRELLVNPP 235 VE + + + N T SPND V F VE+ + N+CLP+ +E L +L+V Sbjct: 178 VETIETNPAI---NQTLSPNDPVALITFSVEMNKRSTFINMCLPYLSVEKILDKLVVQYA 234 Query: 236 LENSRNEDQ-NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 +N R+ L + + +E+VA ++ + LKL GDV+ ++ Sbjct: 235 FKNDNEASMAESREKLEKGINKVDVEIVAELGTANITVDDFLKLTVGDVIKLD 287 >UniRef50_A8ERA3 Flagellar motor switch protein FliM n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERA3_ARCB4 Length = 368 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 9/321 (2%) Query: 6 LSQAEIDALLN----GDSEVKDEPTASVSG-ESDIRPYDPNTQRRVVRERLQALEIINER 60 LSQ EIDALL+ GD P + E + YD RV ++L+AL ++++ Sbjct: 5 LSQDEIDALLDIAEQGDDIDGTNPLDKFTAKEKNYSIYDFKKPNRVTLDQLKALTTMHDK 64 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 R F L ++LR+ DI + I Y EF ++P T+L+ + +KPL G ++ +P Sbjct: 65 MLREFINDLSSMLRKIVDIKLTTIEQMTYGEFILSIPQVTSLSTLSMKPLDGRIVIECNP 124 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 ++ + +L G RE T E +V+ K+ ++ W I+ L Sbjct: 125 TISHKVIADLLGSGAVNTMDNLDRELTEIEIKVLEHFYKMFIKILYKTWSDISSLNFRIE 184 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 S+ I S +DIV+ F + I +G +IC P S IEPL +V+ + Sbjct: 185 SSDTNANAIQI-VSDHDIVLLVVFEITIDEDSGFLSICYPISYIEPLLNKIVDKIFSEGK 243 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK---PDRIIAHVD 297 N+ + ++++ + +++++ A A+ L ++IL L D++ K +++ Sbjct: 244 NKKLSRKEDIKTLISGARMKVEAIMAETELTTAEILNLKENDIIVFNKNASSSSATVYIN 303 Query: 298 GVPVLTSQYGTLNGQYALRIE 318 ++ G N + A++I+ Sbjct: 304 KKEKFSAVSGISNNRKAVQIK 324 >UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6B3_THEAS Length = 335 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/328 (26%), Positives = 152/328 (46%), Gaps = 28/328 (8%) Query: 5 ILSQAEIDALLNG-DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 +LSQ EID+LL S D + I+ YD + +++L+A+++I++ FAR Sbjct: 5 VLSQNEIDSLLQALSSGSVDLAAIESKDDRKIKVYDFRRPDKFSKDQLRAIQMIHDSFAR 64 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLV 123 L L+R V ++ Y EF R+L PT + ++ + PL G ++ +P LV Sbjct: 65 QLTTSLSTLVRSMVSSEVVSVDQLAYDEFIRSLVQPTVIGVLEMYPLSGNAVLEMNPHLV 124 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 F +D + GG G P + + R+ T E+ V+ R++ LE ++W + + + E Sbjct: 125 FAIIDRMLGGKGE-PIR-KPRDLTDIERTVVERVMLKILEHLEESWSTVVDIRFRFESME 182 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNED 243 F I D+V+ V++G G N+C+P+ ++EP+ + L + Sbjct: 183 SNPFFVQICPG-TDMVLLVTLKVQVGEAEGIMNLCIPYFVMEPMIDKLSS---------- 231 Query: 244 QNW-----RDNL--VRQVQHSQLELVA-----NFADISLRLSQILKLNPGDVLPIEK--P 289 Q+W R N+ R++ ++L VA L L +L+L GDV+ ++ Sbjct: 232 QHWFASTGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDVIRLDAKTS 291 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRI 317 D + V + G+ N YA R+ Sbjct: 292 DPLGLRVGNRVKFLCEAGSFNKHYAARV 319 >UniRef50_Q4JMS1 Predicted flagellar motor switch protein n=2 Tax=Bacteria RepID=Q4JMS1_9BACT Length = 321 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/316 (23%), Positives = 146/316 (46%), Gaps = 6/316 (1%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS E++AL++G + P+ + G+ ++RP+ + + AL IINERFAR Sbjct: 7 LSSDEVNALIDGLGAETNAPSGIMDGD-EVRPFQFGSDDLSLLGDYHALRIINERFARLA 65 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R +LR P I+ ++ + E+ + +LN+ ++ LRG L V +P+ + + Sbjct: 66 RSVFLPMLRIQPRISSFPPEVKTFDEYTAGIENFMSLNISRIEELRGNMLSVMTPNFISV 125 Query: 126 AVDNLFGGD-GRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184 ++ +GG P+K EFT TE+R+I + E AW+ + P+++ Y E+ Sbjct: 126 LTNSYYGGKITALPSK--KSEFTATEERIIELVTDGLNETLQVAWRDLMPIKITYQNREI 183 Query: 185 QVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRELLVNPPLENSRNED 243 +F + + V+ F V++ + F+I P ++P+ L + + ++ Sbjct: 184 NPQFASFVDGA-EFVIICSFVVQLPDTDAASFDIIYPLQTLKPIAAQLRSRLQADVAEDN 242 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLT 303 WR+ + R V + L + A + + ++ + GD PI + + +D Sbjct: 243 HTWREKMERAVLNIPLPVTARLGQPVVSMYNLINMQVGDTFPITIGEGVEVRIDTEDAFI 302 Query: 304 SQYGTLNGQYALRIEH 319 G + G A+ ++ Sbjct: 303 GDLGDVGGNAAVNLKS 318 >UniRef50_B8I3P2 Flagellar motor switch protein FliM n=2 Tax=Clostridium RepID=B8I3P2_CLOCE Length = 328 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 142/293 (48%), Gaps = 12/293 (4%) Query: 1 MGDSILSQAEID----ALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEI 56 MGD ILSQ EID AL GD +V+ S E ++ +D + + + L+ Sbjct: 1 MGD-ILSQNEIDELLKALTTGDIDVQQ--IQSTKTEKKVKIHDFKKPPKFANDHKRTLQF 57 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 INE +AR + L LR + V ++ Y EF+ +L P L ++ PL G+ + Sbjct: 58 INENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPVILGIVDFTPLNGSVIF 117 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 PS+ + +D + GG G +V R FT E +I R++ L + W++I ++ Sbjct: 118 EMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWESIIAIK 175 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR-ELLVNPP 235 + E +F I PN++V +V +G + G NIC+P +EP+ +L Sbjct: 176 PRLEKIETNAQFAQI-IHPNEMVALITLNVVVGEVKGLINICIPHITVEPIMPKLSTKLW 234 Query: 236 LENSRNED-QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 N NE ++ + ++ ++ H+ + + A S+ +S+ L L GDVLP++ Sbjct: 235 FTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLD 287 >UniRef50_Q3A5D9 Flagellar biosynthesis protein, component of motor switch n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5D9_PELCD Length = 331 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 151/340 (44%), Gaps = 34/340 (10%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRE------------- 49 + ILS+ EI LL S V D GE +R +P V RE Sbjct: 2 ERILSKEEIAELL---SAVHD-------GEIPLRDEEPEPPAEVKREISSLNLVALQGPR 51 Query: 50 --RLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL 107 +++ +++ + ARH + L N ++RS + +++ Y F + L L +I L Sbjct: 52 HCKIENFDLVLDTLARHLGISLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRL 111 Query: 108 KPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSD 167 PLR G+ +F L F +++L GG + GR T E V+ + A + Sbjct: 112 DPLRWRGVFIFKEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNK 171 Query: 168 AWKAINPLEVEYVRSEMQVKFTNITTSPNDI-VVNTPFHVEIGNLTGEFNICLPFSMIEP 226 + + +E V+ E + NI P D V+ F V NL E + LP +M++P Sbjct: 172 TFAPLEKIESSLVKIESSTRLINIV--PGDASVLAAHFVVTGNNLEDEIVLVLPMAMLDP 229 Query: 227 LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI 286 L+E + S ++D+ W+ L ++++ ++L A A ++L + IL GD+L + Sbjct: 230 LKEKMREGSAVFSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDL 289 Query: 287 ----EKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 P ++ A G P + GT G+ A+RI IN Sbjct: 290 GCAPSSPLQVRAA--GQPKFQAIAGTHQGKKAVRISGRIN 327 >UniRef50_B2V6S5 Flagellar motor switch protein FliM n=2 Tax=Sulfurihydrogenibium RepID=B2V6S5_SULSY Length = 322 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/321 (23%), Positives = 150/321 (46%), Gaps = 15/321 (4%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRP--YDPNTQRRVVRERLQALEIINERFAR 63 LSQ EIDAL+ G +S + E I+ +D N ++ + Q LE++ E++ + Sbjct: 5 LSQDEIDALIGGGK-------SSATAEEKIKEKLFDFNRLEKIQKGGFQGLEVLFEKWVK 57 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLV 123 FR + ++ G I + +F +P+P + + ++KPL+ + L++ +V Sbjct: 58 IFREEIRTEFPVVNMVSKGKIVTMRFGDFIGKIPLPASYTIFNMKPLKDSSLLIIDSRVV 117 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 F V LFGG R P K+EGREFT E R+I +++ + L + WK + P+E+E E Sbjct: 118 FNLVSALFGGGAR-PFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDVYPIEIERKSIE 176 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNED 243 I + ++V ++I L P + P++++L + + + Sbjct: 177 FNPILVRIVSHAEKVIV-AEIMIDIEGLEVPLTFAFPQMLFLPIKDILFTDTFGSEVSPE 235 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD--VLPIEKPDRIIAHVDGVPV 301 WR L++++ L+L+ S+ + + L + G +L ++ + + V+ Sbjct: 236 --WRKELIKKLLKVNLKLILELDKFSVLVKEFLNYDVGTEIILNKKQSEELDLKVEDKVK 293 Query: 302 LTSQYGTLNGQYALRIEHLIN 322 + G L+ ++A I +I Sbjct: 294 FKASLGKLDKKFAAMITKVIK 314 >UniRef50_Q7UNV1 Flagellar motor switch protein fliM n=1 Tax=Rhodopirellula baltica RepID=Q7UNV1_RHOBA Length = 428 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/303 (25%), Positives = 138/303 (45%), Gaps = 26/303 (8%) Query: 35 IRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 + YD RV +++++A+ ++E AR+F + LLR ++ + ++ Y EF Sbjct: 76 VTAYDFKRPERVGKDQMRAMHSLHESIARNFGASISGLLRTMIEVKLLSVDQLTYSEFVF 135 Query: 95 NLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVI 154 +L P+ N+I PL G ++ +P L + +D + GGD P + R T E R++ Sbjct: 136 SLDNPSCFNVIKPLPLEGHWVLDIAPGLAYAIIDRMLGGD-PVPGETIRRPLTEIETRLM 194 Query: 155 NRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGE 214 R+++L LE AW+ + LE +E + I PN++ + F V +G G Sbjct: 195 CRVVELFLEQIVPAWENVIQLEPSIHTTESNPQLAQI-VPPNEVAILVGFEVLLGKNRGM 253 Query: 215 FNICLPFSMIEPLRELLVNPPLENSRNEDQNW------------RDNLVRQVQHSQLELV 262 N+C+PF+ IE L SRN W R + + + +++V Sbjct: 254 MNLCIPFNSIEKYNAKL-------SRN---GWVGYGKTNPTPQSRRKIADSIDAAPVDVV 303 Query: 263 ANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 A +R S +L LN GD++ E+ + V V + G G+ A++++ Sbjct: 304 VTLARSKIRTSDLLDLNVGDIITTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQST 363 Query: 321 INP 323 + P Sbjct: 364 VEP 366 >UniRef50_B4U6V4 Flagellar motor switch protein FliM n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6V4_HYDS0 Length = 321 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/326 (22%), Positives = 161/326 (49%), Gaps = 14/326 (4%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + +L Q E+D LL + ++ S+ E +D + R+ + LEII E+ Sbjct: 1 MAEQVLGQEEVDLLLKSLGKEEEVEEKSLEYE----KFDIDDLERISLGTIAGLEIILEK 56 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 ++R R+ L +L+ +I + + + LPVP+ +N+ ++ L+GT ++ P Sbjct: 57 WSRLSRVKLSSLIVAINNIYKAETSLIRFEDLITKLPVPSCINMFNITGLKGTHFLILDP 116 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 +++ V +FGG + P ++EG+EFT E ++I +++ L L + ++W +I EV Y+ Sbjct: 117 RMIYSIVSVIFGGSAK-PYRIEGKEFTKLELKIIKKVVDLLLSAFQESWNSILSGEVMYL 175 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 +E+ S ++ + ++EI + + + S +EP+ + L N + Sbjct: 176 ETEVNPALIAPMNSKKEMFIQAHINIEIDGIDYPIFLAIQNSSLEPVVDRLRNVSEVSDY 235 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE----KPDRIIAHV 296 + + NL++ + S L + + D ++ IL+ GD + ++ +P ++ ++ Sbjct: 236 VDYDSINKNLIKNLTVS-LSVAIDGGDFMVK--DILEWEVGDTITLKTSANRPVKV--NI 290 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLIN 322 +G+ + G N + A++I L++ Sbjct: 291 EGMLKMYGVLGRSNSKKAVKILKLLD 316 >UniRef50_A8F895 Flagellar motor switch protein FliM n=10 Tax=Thermotogaceae RepID=A8F895_THELT Length = 330 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 158/339 (46%), Gaps = 32/339 (9%) Query: 1 MGDSILSQAEIDALLNGDS-------EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQA 53 M D +LSQ EID LL S E+K E T V + YD + +E ++ Sbjct: 1 MSD-VLSQDEIDKLLQAISSGEVTVDEIKKEETKKV------KLYDFRRPSKFSKEHIRV 53 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 ++I+E FAR L +R +I + +I Y EF R+LP P+ + + G+ Sbjct: 54 FDMIHENFARSISTYLSGRVRTFTNINLASIDQISYEEFIRSLPAPSFITVFSAPEFVGS 113 Query: 114 GLVVFSPSLVFIAVDNLFGGDG-----RFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 ++ + + + +D + GG G R P+ + E + + V+N + L+ + +S+ Sbjct: 114 AILEMNLEIFYTILDLILGGPGIPNVKRTPSDI---ELSIMRKEVMNILTNLS-QAWSEV 169 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 ++ + +E E +F I PN++++ +V I G NIC P S+ EP Sbjct: 170 YQFVPTIE----SVENNPQFVQI-APPNEMILLVSLYVTIAKTEGFLNICWPSSLTEPFM 224 Query: 229 ELLVNPPLENSRNE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI 286 + L + ++ E + ++L + V+ ++++ A + L + +IL L GDV+ + Sbjct: 225 DKLSSRTWFTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVKEILDLEVGDVIRL 284 Query: 287 E--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 + K D ++ V P ++ G G A+++ ++ P Sbjct: 285 QTHKDDDVMVEVQSKPKFMARPGVFKGHRAVKVTRILKP 323 >UniRef50_C8WBT4 Surface presentation of antigens (SPOA) protein n=3 Tax=Zymomonas mobilis RepID=C8WBT4_ZYMMN Length = 332 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 19/322 (5%) Query: 6 LSQAEIDALL---NGD---SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 LS AE+DALL GD E E T V G+ + P R+ LE I E Sbjct: 17 LSGAEMDALLAELGGDDIEEESPQEKTEFVFGQETLNPI----------VRMAGLERIAE 66 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 + AR R+ + R +TV + I + ++ R+LP +++L L PL+G ++V Sbjct: 67 KLARRLRLIIEPFARARTQVTVDGVDIHHFEKWRRDLPEFVSISLYRLAPLKGGAMIVMD 126 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P + VD +GG G T +EFT E+R++ R+ + ++W + L+ ++ Sbjct: 127 PQFITGLVDAFYGGTG-IVTPSRAKEFTPAEERLLVRLSDTIADSVVESWSDVVQLQSQF 185 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLEN 238 + E + + + +VV F + GN +I P + + P L ++ Sbjct: 186 LSRETNGAYVTMIRNDEAVVVQR-FTIVPGNGRAARISIVYPRATLRPFEMHLDTKVHDD 244 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDG 298 + D+NW + + + A + + Q+ L G+V+PIE P+++ Sbjct: 245 AGPADENWTKRMRLAASAIPIPIKTILARPQITMGQLKNLKVGEVIPIEMPEQLPLIAGT 304 Query: 299 VPVLTSQYGTLNGQYALRIEHL 320 + G +G+ AL IE L Sbjct: 305 KKIAYGSIGDRDGKTALLIEKL 326 >UniRef50_B6IQ99 Flagellar motor switch protein FliM n=2 Tax=Rhodospirillum centenum RepID=B6IQ99_RHOCS Length = 352 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/318 (24%), Positives = 148/318 (46%), Gaps = 17/318 (5%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGE---SDIRPYDPNTQRRVVRERLQALEIINERFA 62 LSQ EID LL+ D + K T SV + S YD RL L+++ +R Sbjct: 31 LSQTEIDRLLDVD-DSKSVRTRSVIDQIVNSSFVNYD----------RLPMLDVVFDRLV 79 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R NL + ++TV I + ++ +P+P+ + ++ + L+ L Sbjct: 80 RLLNTSFRNLTSGTVEVTVQQIASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSEL 139 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 ++ VD L GG P ++GR +T E+ + R+++ L+ A+ ++ + R Sbjct: 140 IYSIVDILLGGRRSDPAPIDGRPYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACERV 199 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242 E +F IT S N+ ++ F V + G ++ +P++ +EP+R+LL+ + Sbjct: 200 ETTPQFAVITRS-NNACISARFQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFGR 258 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE-KPD-RIIAHVDGVP 300 D W +L +++ + ++L A + L+ +L G L ++ +PD + + VP Sbjct: 259 DSMWETHLKNELRRTSVDLSAVLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVP 318 Query: 301 VLTSQYGTLNGQYALRIE 318 + + G NG A+RI+ Sbjct: 319 MFVGEMGQRNGNVAIRID 336 >UniRef50_A0LDL0 Flagellar motor switch protein FliM n=4 Tax=cellular organisms RepID=A0LDL0_MAGSM Length = 332 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/331 (23%), Positives = 146/331 (44%), Gaps = 16/331 (4%) Query: 5 ILSQAEIDALLNG--------DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEI 56 ILS EIDAL+ G D +D P+AS E P+ + + L L++ Sbjct: 4 ILSTDEIDALMMGLEEGTIDLDEIDEDMPSAS-KDEKKTTPFTFGQKTAIRVGALPGLDL 62 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 INE A L + R + Q + F + P +N++ ++P + L+ Sbjct: 63 INEHLASQLSFKLTQKVGREVHVQPKTTTNQVFGRFLHTVEPPIFINILRVEPSQSMALI 122 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP-L 175 +++ ++ FGG G ++ R F+ E +VI+R++ +A E +WK ++P Sbjct: 123 SIDGDVMYTVLEGFFGGPG--DSERPFRNFSPFEMKVIDRIMDVAREQIELSWKKLDPSF 180 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + R E Q +F + + + T F VE+G+ G IC P ++E ++ L Sbjct: 181 RLVLARWENQPQFAAVMPLDETVFLIT-FSVEVGDAEGNITICFPAVILELFKQQLKQGF 239 Query: 236 LENSRNEDQN-WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD--VLPIEKPDRI 292 + E + W D L ++ ++++ + + + Q+L L GD +L + + + Sbjct: 240 QQKEEVEGASAWMDALKNELSLVRVDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMSEEM 299 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 + G+ G ++G+ A+RI + P Sbjct: 300 AVQIGGMDKFMCHAGVVDGKRAIRITRTVQP 330 >UniRef50_B0MPD5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPD5_9FIRM Length = 331 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/339 (25%), Positives = 160/339 (47%), Gaps = 28/339 (8%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSG---ESDIRPYDPNTQRRVVRERLQALEII 57 M D+ L+Q +IDA+L+ S + TAS+ + +I+ YD T ++ +E+++ LE I Sbjct: 1 MADT-LTQEQIDAMLS--SVLSGGDTASLDTHEEKEEIKEYDFRTPKKFTKEQIKILERI 57 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL-----KPLRG 112 E ++RH + LLR +++ +I Q Y EF+ LP T + ++ L Sbjct: 58 FENYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEES 117 Query: 113 TGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA- 171 ++ S SL F +D + GG G + R+FT E V+ +++ S AW Sbjct: 118 NAILQLSNSLTFTMIDRMLGGRGTYQDT--DRDFTEIEINVMRGIVERFTSLMSQAWDGY 175 Query: 172 --INPLEVEYVRSEMQVKFTNITTSPND-IVVNTPFHVEIGNLTGEFNICL-PFSMIEPL 227 NP ++E + + +V I+ + D ++ V + + + C+ +M + + Sbjct: 176 VDTNP-KLESIETNSRV----ISAADADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIM 230 Query: 228 REL---LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 ++ + S ++ ++NL+ + S+L + A D L L +L L D++ Sbjct: 231 KKFSAKFSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDII 290 Query: 285 PIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 P+ KP D + V + GTLNG+ A RI++++ Sbjct: 291 PLNKPITDNVQLKVGSTCWFDGKLGTLNGKKAFRIDNIL 329 >UniRef50_C8W1I5 Flagellar motor switch protein FliM n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1I5_DESAS Length = 334 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 16/302 (5%) Query: 5 ILSQAEIDALLNGDS----EVKDEPTASVSG-ESDIRPYDPNTQRRVVRERLQALEIINE 59 +LSQ EID LL+G + +D A + + YD + +L+ L++++E Sbjct: 4 VLSQKEIDRLLDGLKSGIIKAEDLKEAEIQELRMRYKSYDFRRPNKFSENQLRTLQMLHE 63 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 + R L LR S + V ++ + +F ++P PT L + L PL G ++ + Sbjct: 64 GYGRLLSSYLTGYLRASIVVRVISVDQFTFDDFVGSVPSPTLLTVFSLPPLTGPAVLETN 123 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P +F +D LFGG G+ +V RE T E VI +++ LE AW+ + + E Sbjct: 124 PQFLFPIIDLLFGGTGKMSDRV--RELTDIELSVIKKLIPKLLEQLVLAWQDLYEVTAEL 181 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPLEN 238 E + + +P +I+ F IG + G N+CLP+ M+EP+ L + N Sbjct: 182 QSIETNPRLMQV-MNPGEIIALLTFSTVIGGTSRGLINLCLPYLMLEPVLSKL-SIHYRN 239 Query: 239 SRNEDQNWRDNLVR---QVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAH 295 +R +D D+L R + ++L L A + + + L+L GDVL +++ RI Sbjct: 240 TR-KDMAKEDDLRRLEYWMGQAELTLTAVAGETKISVRDFLQLQEGDVLTLDR--RIDED 296 Query: 296 VD 297 VD Sbjct: 297 VD 298 >UniRef50_Q01VK1 Flagellar motor switch protein FliM n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VK1_SOLUE Length = 293 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 135/271 (49%), Gaps = 8/271 (2%) Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 ++A+ ++++ F R+ L LR + + ++ Y EF LP PT + + L P Sbjct: 1 MRAIHLLHDTFVRNLVSSLSAYLRSYLTVNLVSVEQLSYAEFLDGLPSPTCIVSLGLSPY 60 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK 170 G G++ +PSLVF ++ L GG G+ ++ R+ T EQR+++ + ++ L+ +AWK Sbjct: 61 DGNGVLELNPSLVFPILEMLLGGTGKSSATIQ-RDITEIEQRLLDGLFRIILQDLREAWK 119 Query: 171 AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 230 A+ ++ E + + ++ +PN+ VV+ V IG G NI +P +I+ +R+ Sbjct: 120 AVTNVDFTIESMETEPQLLHL-LAPNEAVVSIGIEVRIGETVGMMNIAMPSIVIKMMRQK 178 Query: 231 LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL----PI 286 + + + ++R ++ + L + A +L + +L L G++L P+ Sbjct: 179 FDQQWSVRKTHASEAEQFRVLRVLRQATLTVEALMEGPTLSVGDLLSLREGNLLTFDFPV 238 Query: 287 EKPDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 E+P ++ V+G T Q + + A +I Sbjct: 239 ERPIELV--VNGACKFTGQVVSTGRKRACQI 267 >UniRef50_C2ED82 Flagellar motor switch protein FliM n=5 Tax=Lactobacillales RepID=C2ED82_9LACO Length = 336 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 85/337 (25%), Positives = 158/337 (46%), Gaps = 34/337 (10%) Query: 3 DSILSQAEIDALLNG--DSEVKDEPTASVSGES-DIRPYDPNTQRRVVRERLQALEIINE 59 D +LSQ EIDALLN E+ ++ ++ +R YD R+ +E + L +I E Sbjct: 2 DQVLSQEEIDALLNAMNTGEISEDTIEEEKNDAPKVREYDFRRPTRLSKEYINTLHMIFE 61 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F++ L LR + + + AI Y EF ++P T L + H +PL+G+ L+ + Sbjct: 62 DFSKMTGNVLSTQLRTNVSVDLAAIEQISYDEFMHSIPRVTLLGMFHSEPLKGSQLLEIN 121 Query: 120 PSLVFIAVDNLFGG--------DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA 171 P L + V+ L GG D + P+ +E F+ + ++ + K + Y +WK Sbjct: 122 PQLCSLMVELLCGGLDVRTQHPDEKIPS-IES--FSDIDLALMRELFKEIVNVYKTSWKD 178 Query: 172 INPLEVEYVRSEMQVKFTNITT--------SPNDIVVNTPFHVEIGNLTGEFNICLPFSM 223 I E+ KF I T SPN+ VV F V++ ++ N+C+P+ Sbjct: 179 I---------VELNSKFDTIDTNPQLSQAMSPNEPVVLVTFTVKVFGISTFINLCIPYVF 229 Query: 224 IEP-LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 E L +L + ++S +++++ + R + + ++ + D + + L L GD Sbjct: 230 FEGILDKLSIRNWFDSSSDDNEDDSLEIKRGLNNVEMVIETKLGDAQMSFADFLNLEAGD 289 Query: 283 VLPIEKPDR--IIAHVDGVPVLTSQYGTLNGQYALRI 317 V+ ++K + +++G P + G +GQ A+ + Sbjct: 290 VIRLDKKTTSPLETYIEGEPFFYVKPGQKDGQLAIEL 326 >UniRef50_A0LT67 Flagellar motor switch protein FliM n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT67_ACIC1 Length = 314 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 134/287 (46%), Gaps = 18/287 (6%) Query: 36 RPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARN 95 +PYD ++ R ++ L I E F R F L + L + + A+ Y ++ + Sbjct: 23 KPYDFRRPNKLNRAHVRTLHIAYETFCRQFTTVLTSTLGVFSLVELVAVEQMSYVDYVES 82 Query: 96 LPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDG------RFPTKVEGREFTHT 149 LP PT L LI L PL+GTG++ + VD + GG G R PT VE Sbjct: 83 LPTPTFLALISLDPLQGTGILQLPLETAMLCVDRVLGGPGSAQQPTRLPTDVETEIMKMV 142 Query: 150 EQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG 209 +R + L+ A EG ++P + + E +F P+DIVV +++G Sbjct: 143 TRRAVQE-LRYAFEGLVQ----VSP---DVIGIETNPQFAQAAV-PSDIVVVASLEIKVG 193 Query: 210 NLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADIS 269 + G + +PF+ + P+ E +P + R+ + + L +++ ++E+ F ++ Sbjct: 194 DQDGAATLMIPFTGLYPVLEAAASPKRGDRRDLLERSQAALRARLEDVEIEVAVQFPYVA 253 Query: 270 LRLSQILKLNPGDVLPIEKPDR--IIAHVDGVPVLTSQYGTLNGQYA 314 L ++L L+ GDVL + P ++ +G+P + G+ NG+ A Sbjct: 254 LTPHELLNLSVGDVLSLRHPTNAPLLITAEGIPFAYAVPGS-NGRQA 299 >UniRef50_Q1JZS7 Flagellar motor switch protein FliM n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZS7_DESAC Length = 329 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 83/327 (25%), Positives = 150/327 (45%), Gaps = 23/327 (7%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPN----TQRRVVRERLQA------L 54 ILS+ EI LL S VKD T ES Y P + +V+ + QA Sbjct: 4 ILSKDEIAELL---SAVKD-GTLDAELESSDEDYSPEPRAVSSFSLVQSKGQATMRLANF 59 Query: 55 EIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTG 114 +I+ + FAR+ L N L+R+ + +I Y ++ L PL+ G Sbjct: 60 DILLDGFARNLSFSLSNRLQRAVSVLRESISSMEYETLIHECSNHELYGILSLDPLKKNG 119 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 L++F S+ F V+ + GG + R T E ++ +++ + + A+ I Sbjct: 120 LLIFDSSISFAQVEIMLGGVAEHSGDLPQRGMTTIETNILKEVIRESCLELNKAFSPIEG 179 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 LE + VR E + I + +++V F V+I ++G + +P+S ++P+RE L + Sbjct: 180 LESDLVRVESNPRLVTIVPADTEMMV-AAFRVKINEISGLLRLVIPYSSLDPIREKLKSE 238 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL----PIEKPD 290 + WR +L +V+ + + A A I+L + +IL L GD+L +++P Sbjct: 239 L--GASGPGGQWRSHLAHEVEDMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPV 296 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRI 317 ++ V+G + G +G+ A+R+ Sbjct: 297 SVM--VEGKGKFSGLAGLRDGKKAVRV 321 >UniRef50_A9BEY4 Flagellar motor switch protein FliM n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEY4_PETMO Length = 359 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 142/330 (43%), Gaps = 28/330 (8%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGES-------------DIRPYDPNTQRRVVRE 49 D L+Q EID++L S SGES I+ YD + RE Sbjct: 4 DETLTQEEIDSILKSMS----------SGESPEEVLEEYQEEERRIKDYDFRRPMKFSRE 53 Query: 50 RLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKP 109 +L+ L++I+E FAR L R D+ +I + EF ++L PT + + + Sbjct: 54 QLRTLQLIHESFARELSTYLSGRSRTFVDVKYASIDQITFSEFQKSLNSPTFIVIFSSEA 113 Query: 110 LRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW 169 G+ ++ L ++ +D L GG G T E R T E ++ + + L S +W Sbjct: 114 FSGSAILQMGLDLGYVIIDRLLGGPGN--TLEEIRPPTEIEMNILRKESAVMLRMLSKSW 171 Query: 170 KAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRE 229 I + E +F + PN++ + V I N+ G N+C P S +EPL + Sbjct: 172 SNIEEFDANLENLETNPQFVQVA-PPNEMTILITLSVTIKNVQGFVNLCFPSSSLEPLND 230 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK- 288 L S + +++NL + + S+L L A + L+ L L GDV+ ++ Sbjct: 231 KLTTRMWTTSYRHTEEFKENLRQSLLLSKLNLSAILGKTEIYLNDFLNLEVGDVIRLDSF 290 Query: 289 -PDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 + I ++ P+ G G Y+++I Sbjct: 291 YDEPIDLEIEERPIFKVNVGKSKGFYSVKI 320 >UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67K08_SYMTH Length = 308 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 132/294 (44%), Gaps = 23/294 (7%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LSQAEIDAL+ +S ++IR YD + ++ ++ L +++E AR Sbjct: 5 LSQAEIDALV-------------MSTGTNIRTYDFRRPSKFNKDLIRTLVLVHENLARLL 51 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 + L LR ITV + + EF + LP PT L PL G L+ S ++ F Sbjct: 52 QSYLSAGLRTWVQITVRSTNQYTFSEFTQLLPNPTIALSFRLNPLPGMCLLEISHNIAFA 111 Query: 126 AVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQ 185 V+ +FGG G RE T E +I R+++ +AW+ + ++ E Sbjct: 112 IVERVFGGPGS--DLQPQRELTEIELGIIQRVVRDTFGPMKEAWRNVAEIDPAIEAVETN 169 Query: 186 VKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP-LRELLVNPPLENSRNEDQ 244 F I +P ++V VEIG G P+S +EP L L L ++++ Sbjct: 170 PVFIQI-ENPTEVVAAITLAVEIGEHLGHMTFAFPYSTVEPVLSRLSPQSWLAETKHKSP 228 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDG 298 + ++L R VQ + L + A +RL + L L GDV+ R+ A V G Sbjct: 229 SDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDVI------RLDARVGG 276 >UniRef50_A6DWS9 Flagellar switch protein FliM n=1 Tax=Roseovarius sp. TM1035 RepID=A6DWS9_9RHOB Length = 325 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 8/320 (2%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS E+ AL++G +++ E T G ++ Y + + L ++NERF R Sbjct: 12 LSSNEVAALVDGLLDMEKEQT---HGTESVKRYKFGSDNLSIMGDYHGLRMVNERFCRLA 68 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R LR P I+ ++ + + L +L + LR L++ P+ V + Sbjct: 69 RPVFLPFLRMHPRISAFPPEVKSFSHYCDELENFVSLTTARVDALRSNQLIMLPPNFVSL 128 Query: 126 AVDNLFGGDGRFPTKVEGR-EFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184 + +GG+ + GR EFT +E RVI + K AW+ + PL+ E Sbjct: 129 LTNAYYGGNIAYLPG--GRAEFTASETRVIEIVTKGIYRALEAAWRDLIPLDFANPVHED 186 Query: 185 QVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPLENSRNED 243 ++F S +V + F +++ ++ P ++P+ L + + +D Sbjct: 187 NLQFATFVESEEKVVCCS-FIIQLPEADPATLDLIYPLQALKPIAARLRSRMQSDQVADD 245 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLT 303 WR L V L + A A+ ++ +S + L PG V+P++ R V+G P+ Sbjct: 246 LRWRSRLREAVMAVPLNVTARLAEPNVPISALTGLRPGRVVPVDLTLRPQLLVEGTPLFD 305 Query: 304 SQYGTLNGQYALRIEHLINP 323 ++ G NG+ AL + I P Sbjct: 306 AEPGAQNGRAALSLTRRIEP 325 >UniRef50_P34009 Flagellar motor switch protein fliM n=45 Tax=Alphaproteobacteria RepID=FLIM_CAUCR Length = 373 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 149/326 (45%), Gaps = 25/326 (7%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVV-------RERLQALE 55 + IL+Q EID+LL D +SG+ D T R + ERL LE Sbjct: 49 ERILNQDEIDSLLGFD----------LSGDGS----DDRTGIRAIINSALVSYERLPMLE 94 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 I+ +R R L N + ++++ I + ++ ++P+P L + + L GL Sbjct: 95 IVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPGILAVFRAEELDNYGL 154 Query: 116 VVFSPSLVFIAVDNLFGGD-GRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 + +L++ VD L GG G ++EGR +T E+ ++ RM+ + L A++ ++P Sbjct: 155 LTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMIDVVLHDLKSAFEPLHP 214 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + R E F I N ++ +++ + G + LP++ +EP+R++L+ Sbjct: 215 VSFSLDRLETNPPFAAIARPANAAIL-VKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQ 273 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRI-- 292 + D W +L ++ +Q+E+ A + + LS++L + GD L + R Sbjct: 274 FMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATSRQPG 333 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIE 318 A +P+ + G N A+R E Sbjct: 334 GAARRRIPLTRGRMGRRNHSIAVRAE 359 >UniRef50_B4UFI3 Flagellar motor switch protein FliM n=3 Tax=Anaeromyxobacter RepID=B4UFI3_ANASK Length = 338 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 138/291 (47%), Gaps = 20/291 (6%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 ++L+ EI AL+ + + + S + + PYD +Q R++R ++ L+ INE+ A Sbjct: 7 AVLTSDEIKALMGAIQDGRLATEGAPSSRAQVAPYDLTSQDRIIRGQMPTLDAINEQVAS 66 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLV 123 +GL R++ IT + + + A L P ++ ++ L G L V L Sbjct: 67 MLGIGLAGRTRQALRITSAPATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLA 126 Query: 124 FIAVDNLF----------GGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 + GGD R RE T EQ V+ R+L+L E + AW + Sbjct: 127 EALLAAALGDRRVRQPEEGGDTR-------RELTSVEQLVLRRLLRLLAEAMTQAWAPVL 179 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN 233 P E E +R E + +I SP D+ + + F ++ G + G ++ +P++ +E ++ L + Sbjct: 180 PFEPEVLRLEPDPRMASI-ASPTDVGIVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSS 237 Query: 234 PPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 P S+ D+ + D L R+V+ +E+ + + +++L+L G+VL Sbjct: 238 -PRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLLELAEGEVL 287 >UniRef50_Q12PK7 Surface presentation of antigens (SPOA) protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12PK7_SHEDO Length = 181 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 1/147 (0%) Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 +E +Y+ SE+ NI SP ++VV FH+E+ G+F+I +P+SMIEP+RELL Sbjct: 11 VEFDYLDSEVNPAMANIV-SPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAG 69 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIA 294 + ++ D W L ++ Q+ AN + L L ++ L GD++PIE P+ I+ Sbjct: 70 VQSDKQDTDMRWSQALRDEIMDVQVGFDANIVEHELTLRDVMGLRAGDIIPIELPEHIMM 129 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLI 321 ++ +P + G AL+I I Sbjct: 130 RIEDLPTYRCKMGKSRDHLALKISEKI 156 >UniRef50_P57182 Flagellar motor switch protein fliM n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=FLIM_BUCAI Length = 315 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 131/288 (45%), Gaps = 10/288 (3%) Query: 43 QRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL 102 + + + + ++ LE IN F+ F N L+ S ++ +I+I N + TNL Sbjct: 18 ESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSC---TSNKEIITNL 74 Query: 103 ---NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG-REFTHTEQRVINRML 158 NLI + P + ++F + + +D LFGG G F + R+ T TE V +++ Sbjct: 75 RCLNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIM 134 Query: 159 KLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC 218 K +S+ +K E+ + ++ F N + + F+ +I N FN Sbjct: 135 KFITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINCFNFKINNTEIFFNFL 194 Query: 219 LPFSMIEPLRELLVNPPLENSRNE--DQNWRDNL-VRQVQHSQLELVANFADISLRLSQI 275 +P S+++ E ++ +N ++N + + + + + ++ +++ IS+ +I Sbjct: 195 IPKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKI 254 Query: 276 LKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 L+ GDVL I+KP++I + + Y N Q + IE I+ Sbjct: 255 YNLSIGDVLSIKKPNKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDS 302 >UniRef50_UPI00016C0DBD flagellar motor switch protein FliM n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0DBD Length = 327 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/324 (23%), Positives = 156/324 (48%), Gaps = 10/324 (3%) Query: 5 ILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 +LSQ EIDAL E+ E E ++ Y+ + RE L+ LE++ E +A Sbjct: 4 LLSQEEIDALFAALDTGELDVEEMKEKDKERIVKEYNFARPTKFSREHLRTLELMGENYA 63 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R L L+R I V + + +F +L P L ++ PL+ L+ S ++ Sbjct: 64 RLISQYLSGLMRTLVPIKVVSSEAITFSDFTSSLSNPIALAIVDPYPLKNNMLLELSTNV 123 Query: 123 VFIAVDNLFGGDGRFPTKVEG-REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 F ++ L GG+G T++E REFT E ++ R+L+ ++ + W+ + L+ R Sbjct: 124 AFAFLERLLGGEG---TELEHVREFTSIELVILIRVLEHFVDYMREPWENMVALKPRMSR 180 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-VNPPLENSR 240 E + N+ +P ++V F ++ G + G N+C+P+ +EP+ + L + ++S Sbjct: 181 VETNSQILNM-IAPTEMVALITFSIQFGAVDGLMNLCIPYLTVEPIMDKLNTSYQFQSSD 239 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP-DRII-AHVDG 298 ++ N+ ++ + + + A + + + ++L GD++ ++ D +I +V Sbjct: 240 DKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIELQIGDIIRLDTTIDSLIDVYVGN 299 Query: 299 VPVLTSQYGTLNGQYALRIEHLIN 322 V + G + A++I+ +++ Sbjct: 300 VVKFKAVPGIHKNKSAVQIKQILD 323 >UniRef50_B6R823 Flagellar motor switch protein FliM n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R823_9RHOB Length = 321 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 121/275 (44%), Gaps = 3/275 (1%) Query: 49 ERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 +RL L ++ +R AR + L + +P + V ++ + + + ++H + Sbjct: 35 DRLPMLHVVFDRMARQYIDTLRQMAATAPYLAVQSVSNERIGDALEQYEDRAVVAVLHAQ 94 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 L+ F + +F V+ L GGDG +E R T+ EQR+ RM + A A Sbjct: 95 EWDARILLGFDRTFIFSMVEVLLGGDGEEEPFLEDRSLTNVEQRLAYRMFEEAATALETA 154 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 ++AI ++ R E +++F N V+ EI GE I +P S++ PLR Sbjct: 155 FEAIADTSLKVERLENRMEFAQTGRKSNPCVL-AKMTAEIIGREGEIFIIIPQSVLNPLR 213 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 E L D W ++VQ ++++L A + + L ++ + G VL + Sbjct: 214 ENLTQVLSGEVAGRDTRWTKQFQQEVQRTEVKLTAILEEQRMTLEEVAQFEVGLVLELNA 273 Query: 289 PDRIIAHVD--GVPVLTSQYGTLNGQYALRIEHLI 321 + ++ P+ + G + G Y +R+E LI Sbjct: 274 TPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELI 308 >UniRef50_A4A5Y9 Flagellar motor switch protein FliM n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5Y9_9GAMM Length = 327 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/328 (23%), Positives = 141/328 (42%), Gaps = 19/328 (5%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 + +L++ EIDAL+ + A+ G+ R +D + + + AL + ER A Sbjct: 4 EDVLTEGEIDALMESVDDDTSAADAADDGQ--FRRFDFAAREQSLLREFTALGPLVERHA 61 Query: 63 RHFRMGL-------FNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 L F + +P + A + R + V T L PL G Sbjct: 62 EALGEALESGFSIEFTVRGDTPSLLTVADAVASLE---RTVAVSTT----TLSPLAGPVF 114 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + L+ V+ FGG P + T TE R+ R+ + L ++W PL Sbjct: 115 AIAPADLLSFVVNAYFGGGSGGPAESARSNLTPTELRLAERIAEFQLSSMINSWVDKLPL 174 Query: 176 EVEYVRS-EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 E + + M + + S ++++ F + G+ + ++ LPF+ +EP RE P Sbjct: 175 EAGEINTLGMPDRLEMLPAS--EMLLRIAFTLSAGDFSSALSVMLPFAALEPYRERFAPP 232 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIA 294 ++ E Q W R++ +LE+ A S+ L+ +L+L G V+P+ +++ Sbjct: 233 RKQDDVFEGQTWEPFFRRELPGIELEVAGVLATQSIALADLLELEAGAVIPLAPAEQVSL 292 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLIN 322 VD V + +YG+ +G A+++ L + Sbjct: 293 KVDNVTLAEGRYGSFDGVKAVQLHRLAS 320 >UniRef50_B1ZR35 Flagellar motor switch protein FliM n=3 Tax=Verrucomicrobia RepID=B1ZR35_OPITP Length = 351 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 13/290 (4%) Query: 4 SILSQAEIDALLNGDSEV--------KDEPTASVSGESDIRPYDPNTQRRVVRERLQALE 55 SIL Q+EID LL + V + E + + PYD + L+ L Sbjct: 11 SILDQSEIDKLLAQEMAVAPPKQFLLRPEGARGPTPVLKVEPYDFRNPVFLSEVELRRLR 70 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 +++E F R+ L LR + + + Y +F +LP PT+L L ++PL G G+ Sbjct: 71 LLHEDFIRYLAARLSLYLRMELGLKMAKLTTATYAKFTDSLPSPTHLCLFKVEPLIGVGI 130 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + +P L D L GG G K E R T E ++ ++ + LE + WK L Sbjct: 131 LDINPRLALTIADRLLGGRGH-SVKAE-RYLTEIEIALLEDVVNIVLEEWCTQWKTEQEL 188 Query: 176 EVEYVRSEMQVKFTNITTSPND-IVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + + E +F + TSP D IV+ G+ + + I +P+ IEP+ + + Sbjct: 189 RPQIIGHENNGRF--LQTSPKDAIVLILTLEANFGDCSEQIQIGVPYYTIEPVVKKMQAR 246 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 +++ + +H ++ + A ++ + + L +++ L GDV Sbjct: 247 RQKDTAVSTTAKKAEWQAAYEHIKVPVRAEWSAMDISLREVVSLRVGDVF 296 >UniRef50_Q6AJS9 Related to flagellar motor switch protein (FliM) n=1 Tax=Desulfotalea psychrophila RepID=Q6AJS9_DESPS Length = 323 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 133/274 (48%), Gaps = 12/274 (4%) Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPY--HEFARNLPVPTNLNLIHLKPLR 111 +II + FARH+ + L N L+R+ I++ I+++ + + + P + ++ L PL+ Sbjct: 56 FDIIMDSFARHYSILLSNQLQRT--ISIERIKLESFDFQDVFDKIAHPGAIGMLDLPPLQ 113 Query: 112 GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA 171 GL++F+PSL F V+ L G T R+ T E V+ ++ A G A+ Sbjct: 114 QGGLILFNPSLSFSLVERLLGASLDLETVCLNRDPTTIELNVLKVIIDHACLGLDKAFSP 173 Query: 172 INPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL 231 + + V+ + + + +I T P+D V+ F V +G +GE + +P + +E L E L Sbjct: 174 LVNMNSSLVKIDSKPRLMSI-TDPDDEVIACTFRVILGKDSGEILLLIPLAALEVLHEDL 232 Query: 232 VNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE---- 287 + L S W+ + +V+ ++ A + L + IL L GD+L ++ Sbjct: 233 QH-LLRASAKRTTTWQGTIAAEVKKMTADITAQPGRLELSVGDILGLQVGDILEVDYDPS 291 Query: 288 KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 KP +++ V+ P GT NG+ A+ + I Sbjct: 292 KPLKVL--VENSPKFYGIPGTHNGKKAISLTERI 323 >UniRef50_A8U604 Flagellar motor switch protein fliM n=1 Tax=Carnobacterium sp. AT7 RepID=A8U604_9LACT Length = 333 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 75/307 (24%), Positives = 139/307 (45%), Gaps = 15/307 (4%) Query: 5 ILSQAEIDALLNG------DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 +LSQ EID+LL D+ DE ++ ++ YD R+ +E + L +I Sbjct: 4 VLSQQEIDSLLQAVESGEIDAAGIDEQEQE---KNKVKSYDFRRPARLSKEYITTLNMIF 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E FA+ L +R + D+ + +I + EF ++P T + L PL GT ++ Sbjct: 61 EEFAKIIGNILSTQIRTNVDVKLASIEQVSFDEFVHSVPRFTLMGLFRSAPLEGTQIIEL 120 Query: 119 SPSLVFIAVDNLFG-GDGRFPTKVEGR-EFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 +P L VD L G + R +V + FT E ++ +L + + AW+ + L+ Sbjct: 121 NPQLCLQLVDLLCGSSEIRKNDEVMSKNSFTDIEMAILEEILTNFSQSFELAWRDVVDLK 180 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP-LRELLVNPP 235 V+ +E + T SPN+ VV VE+ + N+C+P+ E L +L + Sbjct: 181 VKIDSTETNPQILQ-TMSPNEPVVLVTLTVELHGVKTFINVCVPYIFFEGILEKLSLRNW 239 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRII 293 + + D L + + + + + + + L L+L GD++P++ D ++ Sbjct: 240 FHSEKETDHTDSGKLEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLV 299 Query: 294 AHVDGVP 300 V+ +P Sbjct: 300 LSVEELP 306 >UniRef50_A3U1I7 Flagellar motor switch protein FliM n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U1I7_9RHOB Length = 317 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 67/276 (24%), Positives = 127/276 (46%), Gaps = 12/276 (4%) Query: 49 ERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 ERL LE+I ERF+ + + + + ++ AI P + ++P P +++I Sbjct: 31 ERLPILEVILERFSLAVGPAIKHYVGAICESSIDAIDYLPTGDALESMPSPALISVIESP 90 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 G +V PS + ++ FGG ++ R FT E+++ + +L L S+ Sbjct: 91 DWDGPFALVIDPSFLISTLEITFGGRMAGRSEWVPRSFTAIEKKIGTEVTQLMLNELSET 150 Query: 169 WKAINPLE--VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP 226 + + +E + ++ + Q + PN V HV + + G F I +PF+ + Sbjct: 151 FGQLAQIEFTISHIETNAQAM---VLAPPNTGCVRLRMHVTMDDRDGYFYIVMPFNALSN 207 Query: 227 LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL-- 284 +R +LV P S D++WR N+ + + + + A D + L ++L+ G VL Sbjct: 208 IRNMLVQPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVLDL 267 Query: 285 --PIEKPDRIIAHVDGVPVLTSQYGT-LNGQYALRI 317 +++P +I G + +Q G NG+ AL+I Sbjct: 268 GIEVDQPVSLIC--SGHEMYMAQTGKRKNGRMALKI 301 >UniRef50_C5EFH3 Flagellar motor switch protein FliM n=3 Tax=Clostridiales RepID=C5EFH3_9FIRM Length = 296 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 72/303 (23%), Positives = 136/303 (44%), Gaps = 32/303 (10%) Query: 35 IRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 I+ YD + ++ +ER+ +E + + FAR L LL+ +I++ I + Y EF+ Sbjct: 2 IKSYDFKSPKKFTKERMSTVENLYDSFARALAPYLTGLLQSYCEISINGIVEKRYQEFSN 61 Query: 95 NLPVPTNLNLIHLKPL-----RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVE-GREFTH 148 ++P + +I L P + L F ++ L GG G ++ E R+FT Sbjct: 62 SVPDHSLFGMITLSPANKDYNEAPLTMEVDTRLAFFMIERLLGGVG---SEYELTRDFTD 118 Query: 149 TEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPN--------DIVV 200 E+ ++ +L E +AW +Y+ ++Q T + T+P+ D+V+ Sbjct: 119 IEKAILQYVLGKITEFLGEAWG-------QYL--DVQASLTGLQTNPHLLQMSAQEDVVI 169 Query: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQ----NWRDNLVRQVQH 256 V I L+ N+ +P +E L + + +D+ + R + + + Sbjct: 170 QVELEVVIDKLSARLNMVMPAPNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLE 229 Query: 257 SQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYA 314 S++EL A + +L IL+L PGDV+P+ K I +V+ V ++ G + A Sbjct: 230 SEVELRAILHEFTLDAQDILQLTPGDVIPLNKKVDSGISIYVEDVACFEAKAGHTRLRKA 289 Query: 315 LRI 317 + I Sbjct: 290 VEI 292 >UniRef50_D2S983 Flagellar motor switch protein FliM n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S983_9ACTO Length = 321 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 4/255 (1%) Query: 36 RPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARN 95 R YD ++ RE ++ L+I E FAR L +LR + + I Y ++ + Sbjct: 24 RTYDFRRPTKLSREHVRVLQIAQEAFARQTTTVLTTMLRAGARLELLGIEQHSYDDYVAS 83 Query: 96 LPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIN 155 LP P L ++PL G G++ + + AVD++ GG G R T E + N Sbjct: 84 LPDPCFLATFTIEPLAGKGVLAYPLDIAMAAVDHMLGGSGS--ADQPDRPMTVMETAITN 141 Query: 156 RMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEF 215 +L L + ++ I L+ E E + S +D V+ + + IG+ +GE Sbjct: 142 HLLGRLLSELAGSFSHIIELQPELSEIEYNPQLAQ-AASGSDTVMVASYTIGIGSRSGEA 200 Query: 216 NICLPFSMIEPLRELLVNPPL-ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQ 274 + LPFS + +P L E+++ + + + L ++ +++ FA + + Sbjct: 201 TLVLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLTQVPVDVGVRFAPLEVSSED 260 Query: 275 ILKLNPGDVLPIEKP 289 +L L GDVL + P Sbjct: 261 LLSLAVGDVLLLRHP 275 >UniRef50_A6W8L0 Flagellar motor switch protein FliM n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L0_KINRD Length = 314 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 26/260 (10%) Query: 37 PYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL 96 PYD ++ R+ + LEI E F R + L + LR + + + I+ Y E+A +L Sbjct: 25 PYDFRRPTKLSRQHARVLEITYEGFCRQWATLLSSTLRTTVQVELDGIQQYSYDEYAASL 84 Query: 97 PVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINR 156 P+PT + + +PL G ++ + V ++ + GG G R+ T E + Sbjct: 85 PMPTVMAVFDPEPLVGAAVLHMDMAFVLSCIERMLGGTGH--NAQPERQLTDIEAVLARG 142 Query: 157 MLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSP--------NDIVVNTPFHVEI 208 M++ L + + + ++++ K T I +P D+++ + FH+E+ Sbjct: 143 MVERTLVELASSLVTV---------TDLKPKLTAIDQNPAFAQAAAATDVMIVSSFHLEV 193 Query: 209 GNLTGEFNICLPFSMIEPLRELLVNPPLENSRNED----QNWRDNLVRQVQHSQLELVAN 264 + G + +P ++PL L L + E+ + RD L ++H +E+ Sbjct: 194 DGVAGTATLAMP---LDPLSTALTAAELRVASPEELRIRRLMRDRLDDHLEHIPVEVSVR 250 Query: 265 FADISLRLSQILKLNPGDVL 284 +R +IL L PGDVL Sbjct: 251 MKAAQMRPDEILGLVPGDVL 270 >UniRef50_Q1Q6R4 Similar to flagellar motor switch n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6R4_9BACT Length = 318 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 76/326 (23%), Positives = 143/326 (43%), Gaps = 22/326 (6%) Query: 1 MGDSILSQAEIDALLN----GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEI 56 M D+ILS E+DALLN G V ++ V + ++ YD R RE+ + L+ Sbjct: 1 MSDAILSNEEVDALLNAIESGQVLVGEQIEQKVVKK--VQHYDFRRPDRFPREQKRQLQK 58 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 I+E A + + +R + + + AI Y F + +++ L P RG G + Sbjct: 59 ISENMAVNMGLTFSQYVRTTVGVELIAIEEFSYELFLNSFTDLVCASVVDLTPYRGKGCL 118 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 +D GG G+ K+ R T E+ V++++L L W + +E Sbjct: 119 TLDAGFCLAMIDRGLGGPGKIQQKI--RPLTIIEESVVSQVLSNVLHSMCLCWNDVAEIE 176 Query: 177 VEYVRSEMQVKFTNIT-TSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + +++M ++ + + + I +N E+G TG CLP + +E + + Sbjct: 177 WQIAKTDMDLRSLQVAHNTESMIAINFAISGELG--TGTLVFCLPVATLEAVMGKITEAT 234 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVAN--FADISLRLSQILKLNPGDVLPIEKP--DR 291 L +R E+ +++Q + Q+ L+ N L ++++ L GDV+ ++ D Sbjct: 235 L--NREEEI----VIIKQTLN-QVPLLVNTILGTTQLSFNELINLRVGDVISLDNKITDH 287 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRI 317 + +D VP G + A++I Sbjct: 288 LSLEIDEVPKFFGTPGVSGKKLAIKI 313 >UniRef50_A5FX59 Flagellar motor switch protein FliM n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FX59_ACICJ Length = 337 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 72/333 (21%), Positives = 143/333 (42%), Gaps = 31/333 (9%) Query: 6 LSQAEIDALLNGDSEVKD---EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 L+Q EID++L+G ++D +P E+ Y R ERL E++ ER + Sbjct: 16 LAQEEIDSILSGGGALEDDALQPEPEAEQEASRLLYG----RADSYERLPMAEVVFERLS 71 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHE-FARNLPVP----------TNLNLIHLKPLR 111 R L NL + + ++ + + + + FA P+ NL LIH+ Sbjct: 72 RILAGSLRNLFQDNVEVRLTRLASRRLADSFAEIAPMALLGVFRAREWDNLGLIHVD--- 128 Query: 112 GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA 171 + V + + + + + G+ P V T + + R++++ L +++ Sbjct: 129 --AMTVSNLTEILLGGRRVAAATGQLPKPV-----TSISRNLTERLIRVVLHDLRNSFAP 181 Query: 172 INPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL 231 I + ++ R+E +F I + + + + +I LPF+ +EP+RELL Sbjct: 182 ICDVTFDFERTETDPRFATIGRNSG-VALTARLSLHSAGRNCMIDIILPFATLEPVRELL 240 Query: 232 VNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP-- 289 + + D W +L ++ H+ +EL A + +++L ++ L GD++PI P Sbjct: 241 LQQFMGEKFGRDSIWESHLAEELWHTDIELEAVLDEQTMKLGAVMDLRVGDIIPINAPRG 300 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + V + + G +G+ A I I+ Sbjct: 301 SDVTLRCGSVDLFAGRLGVRHGRLAAEIRGWIS 333 >UniRef50_Q1NGL0 Flagellar switch protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGL0_9SPHN Length = 295 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/279 (22%), Positives = 122/279 (43%), Gaps = 19/279 (6%) Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 L L+ + ++ R R + + P++ R+ + ++ +P T+++L + PL Sbjct: 21 LSGLDRLGDKLGRRIRALIEPIAGVRPNVQAQDARVLDFAAWSAQVPSFTSISLYRILPL 80 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK 170 +G L+ ++ VD +GG G P V G EFT TE R+I R+ + + ++W Sbjct: 81 KGQMLLRLDAGMISTLVDCFYGGIGNRPLPVRG-EFTPTEDRLIARISETLMVRMVESWA 139 Query: 171 AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRE 229 + PL+ + E V + P D +V F V + + ++ P S + + Sbjct: 140 DVLPLDASLILRETGVGYAA-AAQPADQMVLQRFVVTLTRDQEWPIDLLFPLSALRAVEA 198 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE-- 287 L + D W+ + R+++ +L A +L L+ +++L GDV+P+ Sbjct: 199 LTGAKVPADDDQADPVWQGRIARRMRDIRLPARTVLARPNLSLADLMELKVGDVIPVTIG 258 Query: 288 ------KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 +RI+AH G +G+ A +IE L Sbjct: 259 RALPLIVGNRIVAH--------GTIGEQDGRAAFQIEKL 289 >UniRef50_A9DR47 Flagellar motor switch protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DR47_9RHOB Length = 315 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/280 (20%), Positives = 128/280 (45%), Gaps = 8/280 (2%) Query: 43 QRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL 102 Q R +RL LEII +R L + +P+I + ++ PY + ++ P+ + Sbjct: 19 QARESFQRLPTLEIIIDRLLLALVPDLKSYCTIAPEIELTSLEYMPYEDAMESIQSPSLI 78 Query: 103 NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLAL 162 + + + V P L+F ++ + GG + + R T EQ++ R+ +L+L Sbjct: 79 AIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLGRRLAELSL 138 Query: 163 EGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS 222 +G + + ++P++ + E + + + +P V H++ + +G + LP+ Sbjct: 139 KGLAQCLQDVSPVQFDIQSLESNPR-SVMLAAPRTATVLVRMHMQFEDRSGHMALVLPYG 197 Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 ++ + L P L D N R ++ Q+ + + + ++++ L ++L+ G Sbjct: 198 TLDEVSAQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQ 257 Query: 283 V----LPIEKPDRIIAHVDGVPVLTSQYGT-LNGQYALRI 317 V + ++ P ++ V+ P+ + +G NG ALR+ Sbjct: 258 VIDLGMTVDTP--VVGMVNAQPMFQAAFGQRSNGALALRV 295 >UniRef50_C1A553 Flagellar motor switch protein FliM n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A553_GEMAT Length = 331 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 36/334 (10%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M LSQ +ID LL G S A+ S D++ YD RV +ERL+ LE + ER Sbjct: 1 MTSETLSQTDIDRLLGGASR----GNAAASAGLDVQVYDFRRPHRVSKERLRTLEAMYER 56 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 + F L + +R ++ + ++ + EF +LP+P + + + G++ P Sbjct: 57 LVKGFEAWLISRVRGQIEVRLQSVEQFSFGEFTLSLPMPCSSYIFDIAGTGQKGVIDVGP 116 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 VD LFGG+G G T R + + ++A+ +D + E+ Sbjct: 117 EFSTYIVDRLFGGEG------TGSALT----RALTPIERMAVRNVADKITGLLQ-EIWQD 165 Query: 181 RSEMQVKFTNITTSP--------NDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL----- 227 M + T +SP D V+ V G+++ +CLPFS+++ Sbjct: 166 HVAMDLNITGFESSPEILQVVNREDPVLVANVEVNTGSVSSLLLLCLPFSVLDKFFTSNG 225 Query: 228 --RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 R L+N + E + R ++ +++ L A D L + + ++ G V+P Sbjct: 226 QQRLALLN----TNEQEREATRQRSEAALRATKVPLTARLPDFQLSMRDLAQITEGSVIP 281 Query: 286 --IEKPDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 I K R++ G +NG A+RI Sbjct: 282 TAIPKDARVLIRAGTQERFIGHAGRVNGNLAVRI 315 >UniRef50_B8HEJ5 Surface presentation of antigens (SPOA) protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ5_ARTCA Length = 298 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 15/246 (6%) Query: 48 RERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL 107 R+ + LE+ E FAR + L +R T+ + +Q Y E+A +LP T++ L + Sbjct: 28 RQHSRVLEVAFETFARQWGTQLTAKVRVKSSATLEQLSMQSYDEYAASLPSVTSMVLCRI 87 Query: 108 KPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALE--GY 165 ++ F + + + GG G V R+FT E ++ RM++ +LE Y Sbjct: 88 DGSESRLVLQFPATAALAWISRMLGGSGD--ADVPERKFTQIEHALVRRMVEDSLEDLKY 145 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 S PL ++ V+ Q F +P ++++ F V++G L + +P ++ Sbjct: 146 SLGSLLAAPLAMDVVQYNSQ--FAQ-AAAPGELMIVATFSVQVGELPSAATLAIPADVLL 202 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVR-QVQHSQLELVANFADISLRLSQILKLNPGDVL 284 P VNP + D LVR QV +++ A S+ +QIL L GDVL Sbjct: 203 PGLG-AVNP---TAPTADAG---ALVRAQVAQVPVDVAVQLARTSVTPAQILGLAVGDVL 255 Query: 285 PIEKPD 290 P+ P+ Sbjct: 256 PLPHPE 261 >UniRef50_Q0EZ62 Flagellar motor switch protein FliM n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ62_9PROT Length = 330 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/331 (22%), Positives = 135/331 (40%), Gaps = 13/331 (3%) Query: 1 MGDSILSQAEIDALLN--GDSEVKDEPTAS---VSGESDIRPYDPNTQRRVVRERLQALE 55 M + IL+ EI+AL+ +E D AS V + Y N ER Sbjct: 1 MSEPILAPEEIEALMAEVAPAEQTDAMFASLPPVVQPEHVEVYRFNVNDEDSPERYPMFV 60 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 + ER F L +R + V ++ Y + ++ P + + G L Sbjct: 61 NLQERLIEMFDEQWHELFKRDVSVQVSSLESLFYKDIV-SVDAP-QVYFVFEADGYGRML 118 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 V F +L+ VD + GGDG + + E R+ R+ + D W+ + PL Sbjct: 119 VSFDTALIVAFVDAMLGGDGD--ADDNPQTLSAVELRLSERIADKISKTLGDLWQPVYPL 176 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNP 234 + + + +F +T + + +T F +++ + L G+ I P S +EP+ ++L Sbjct: 177 DFSLHKLDYDPQFLAVTGA-MEKCFSTFFDIKLNDELNGQMGIYYPRSFLEPMLDVLRVT 235 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRI 292 + S + D W + L++++ + L + + LK+ PGD LPI D Sbjct: 236 VTDESGDTDMEWTNGLMQRLSQTPAALRFELGRCQIDIGAFLKMMPGDFLPISTRANDPC 295 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 +D +P+ + G NG A I + P Sbjct: 296 SLWIDEIPLFQATPGEKNGGLAAEITEPVQP 326 >UniRef50_Q89AZ4 Flagellar motor switch protein fliM n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=FLIM_BUCBP Length = 331 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 32/320 (10%) Query: 32 ESDIRPYDPNTQRRVVRERLQ-ALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYH 90 S I PY T + ++ LE ++E F + F + I+ IQ + Sbjct: 21 SSKIFPYYQTTDYYLTYHNMKDRLENMHECFLKQFTKHISEYSDVDCKISFYKFIIQKFK 80 Query: 91 EFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGG-------DGRFPTKVEG 143 +N+ + + + P + G++ S ++ ++ LFGG +G F Sbjct: 81 NIKKNIKNNSISDCFEISPYKKLGIIFVSDNISDYLIEYLFGGCELKNSSNGLF------ 134 Query: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQ-------VKFTNITTSPN 196 ++ T + ++ +M K+ LE Y W ++ +++ + + +Q V F N Sbjct: 135 KKLTLSTINIVKKMFKIILEQYYFLWNKVSLCKMKLILNRLQNLNEISNVNFIN----SK 190 Query: 197 DIVVNTPFHVEIGNLTGEFNICLPFSM-IEPLRELLVNPPLENSRNEDQNWRDNLVRQ-- 253 D V F + I N G ICLP S+ + E VN S N + +R+ Sbjct: 191 DTFVTFLFRLRIANKFGMLGICLPTSLSFQCNNEADVNSVHNVSHISYDNVVNTEIRKRL 250 Query: 254 ----VQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTL 309 V + ++ L + + LS+I+ GD+LPI D ++A+ + VP+L +Y Sbjct: 251 FQVIVYNCKIVLKIVLIENYITLSKIIAFKVGDILPIHMLDNVVAYSENVPILIGKYKMF 310 Query: 310 NGQYALRIEHLINPILNSLN 329 +Y + N LN N Sbjct: 311 KNKYVFCVVDYYNSTLNYKN 330 >UniRef50_A9W0F0 Flagellar motor switch protein FliM n=7 Tax=Alphaproteobacteria RepID=A9W0F0_METEP Length = 344 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 3/277 (1%) Query: 49 ERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 +RL L ++ +R A +L + ++ + + EF + + Sbjct: 59 DRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLDAYDANAVVGIFQAP 118 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 G LV ++ V+ LFG DG P + R F+ E R+ + + + + Sbjct: 119 EWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIAQMVFEQVGKALESS 178 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 + ++ R E +++F I N V F ++ N GE + +P +++ PLR Sbjct: 179 FGLVSQTAFRLERMETRMEFAVIGRRSNK-AVQAKFLLQALNRGGEMFLIIPQTVLNPLR 237 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 L S D W + + +VQ + + L A + L L +I L G VL ++ Sbjct: 238 PALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDA 297 Query: 289 --PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 RI + P+ + G G Y LR+E INP Sbjct: 298 TPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 334 >UniRef50_D0I456 Flagellar motor switch protein FliM n=2 Tax=Vibrionaceae RepID=D0I456_VIBHO Length = 296 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/290 (20%), Positives = 127/290 (43%), Gaps = 10/290 (3%) Query: 33 SDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEF 92 +D+RPYD + + L ++ + ++F + ++LR + T + + Sbjct: 14 ADVRPYDLTSPEHRIGAVLATIDNVCKQFETLAKQAFQHILRCPVEFTYQQQHTETLQDH 73 Query: 93 ARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR 152 + + + + P G++V L F+ VD FGG G + + TE R Sbjct: 74 LKAMGEQSLYREFTVSPHHFNGVLVIEKELQFLLVDLFFGGKGIVKARTT---ISDTEWR 130 Query: 153 VINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPFHVEIGNL 211 ++ R L+ Y+ AW++++P + + E + ++ T + + I F + + Sbjct: 131 MMARFFGQMLDQYAIAWQSVSPWQCQLQPKENLDLENTRQDSQLHQIC---RFTMNVCGH 187 Query: 212 TGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLR 271 G +I LP + ++ LR + E Q+ + +++ + + L++ + L Sbjct: 188 QGWIDISLPLNGLDFLRHRHATDDDAATAPELQHIVNATLKK---APIRLLSTLCERQLS 244 Query: 272 LSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 L I+ L GDV+P+E P ++ P+ T++ N L+++++I Sbjct: 245 LGDIMALKVGDVIPVELPGEVVVRAGRTPLFTAKVAEQNATLVLQVQNVI 294 >UniRef50_C6WJP9 Flagellar motor switch protein FliM n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP9_ACTMD Length = 320 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 6/260 (2%) Query: 29 VSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQP 88 V+ D +D ++ RE L+ L++ E F+ L + LR + +I Sbjct: 21 VANPGDPEVFDFTRPVKLPRELLRVLQLCYETFSHRMATLLTSTLRVVCHAELISIEQLS 80 Query: 89 YHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTH 148 Y E L PT L + L+PL GT L+ + S ++D+L GG G R + Sbjct: 81 YAEHMAELANPTLLAPVVLEPLPGTALLEMTLSTAMTSMDHLLGGKG---GPQPARPLSD 137 Query: 149 TEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEI 208 E ++ +L ALE +++ + E E + T++P D VV F + + Sbjct: 138 IETPLLRDLLDQALEQLRVGMESVADVRPELEGLEYNPQLVQ-TSTPTDAVVVGYFELNV 196 Query: 209 GNLTGEFNICLPFSMIEP-LRELLVNPPLENS-RNEDQNWRDNLVRQVQHSQLELVANFA 266 G G+ ++C+P I P LR + S R + R+ + +Q+ + + F Sbjct: 197 GEEQGQVSLCIPLQTILPSLRSYRDKVAVSASERATREAARNAITAGLQNVPVAVSVKFQ 256 Query: 267 DISLRLSQILKLNPGDVLPI 286 + L S ++ L PGDV+P+ Sbjct: 257 SVRLEPSDLVDLQPGDVIPL 276 >UniRef50_Q1IR62 Flagellar motor switch protein FliM n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR62_ACIBL Length = 329 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/291 (21%), Positives = 124/291 (42%), Gaps = 13/291 (4%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESD----IRPYDPNTQRRVVRERLQALEIIN 58 D +L+Q EIDA+ V+ A E + + P++ ++ RE+++++ ++ Sbjct: 2 DKLLNQEEIDAIFRA---VRTGENAGSGSEGERGRKVEPWNYRQAGQINREQVRSISSLH 58 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E FAR+ L LR + + ++ Y E LP + + G + Sbjct: 59 EGFARNLTHSLGAYLRVPFEANLVSVEQLTYRELLGRLPEVAYYSTFRIGTADNIGAMEM 118 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 SL F +D L GG G +V RE T E++++ + K+ + AW+ PL +E Sbjct: 119 DLSLAFPMIDILLGGQGGHDEQV--REITEIEEQILEVVAKVVCKELETAWQ---PLGME 173 Query: 179 YV-RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 + + Q P + ++ F +E+ G N+ + L L Sbjct: 174 FAFEARQQAAQLQRLMPPTEKILALCFELEMPGCRGSLNLAFSAVVSNALLRKLSKDWGY 233 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 ++ + + L R++ + D S+R+ ++L+L GD+LP+++ Sbjct: 234 RRQSRESDGDGKLHRKLLGCPFPVSLGLVDASVRVRELLQLRAGDILPLKR 284 >UniRef50_C1F3H9 Putative flagellar motor switch protein FliM n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3H9_ACIC5 Length = 316 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/307 (25%), Positives = 145/307 (47%), Gaps = 16/307 (5%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D L+Q +IDAL ++ +P A ++++RPY+ + ++ RE+L+++ +N+ FA Sbjct: 2 DKSLAQEQIDALFK-SAKATAQP-AQPEADANVRPYNYSRAGQISREQLRSISSLNDLFA 59 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R+ + L L I + + P+ EF + + + L+PLR ++ + Sbjct: 60 RNLGINLGAWLGMQCRIQLVSAEQIPFEEFVMRGADLSFIASLRLEPLRAVAILQMELAP 119 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 V +D L GG G+ P +V RE T E+ ++ +++L S AW++I L + Sbjct: 120 VPSMIDALLGGIGQ-PGEV--RELTSIEEAIVAHVVELICRELSSAWQSIG-LSFYFESR 175 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF----SMIEPLRELLVNPPLEN 238 +MQ + + + + F + + + +G +I LP +++ LR L +P E+ Sbjct: 176 QMQTQMARLLPI-KERALCLSFEIRLPSASGLLHIALPAVVSNTVLRSLRGDL-HPQKEH 233 Query: 239 SRNEDQNWRDNLVRQVQ-HSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVD 297 S R LV++V + L+L A I +R + L+ V P+ R V Sbjct: 234 SEETRAKMR-GLVKKVSVGTALQLAP--ARIPMRELEGLEAGQVVVFPVTAKTRPELLVA 290 Query: 298 GVPVLTS 304 GVP+ + Sbjct: 291 GVPLFQA 297 >UniRef50_B1M7I2 Flagellar motor switch protein FliM n=4 Tax=Alphaproteobacteria RepID=B1M7I2_METRJ Length = 309 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 3/210 (1%) Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 LV F +F V+ L G DG P E R F++ E R+ R+ + A+ + Sbjct: 89 LVGFDRDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIAQRLFEQVGRAVQSAFALVAD 148 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + R+E+++ F I N+ V F ++ N GE I +P S++ P+R+ L Sbjct: 149 TPFKLERTELRMDFAVIGRR-NNQAVAAKFLLQALNRGGEMFIVIPQSVLNPMRQSLARI 207 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIA 294 + + D W + +VQ + + L A + L L +I L G VL + R Sbjct: 208 LVGETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLELRATPRSRV 267 Query: 295 HVDG--VPVLTSQYGTLNGQYALRIEHLIN 322 + G + G +G LR++H I+ Sbjct: 268 KLVGNDRDLFWCDVGQEDGAIVLRVDHFID 297 >UniRef50_Q2CGI2 Possible flagellar motor switch protein FliM n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGI2_9RHOB Length = 316 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/276 (21%), Positives = 121/276 (43%), Gaps = 11/276 (3%) Query: 49 ERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 ER+ LE++ +R+ + + D+T+ + LP P+ L Sbjct: 28 ERMPMLEVVFDRYVMALASAMKSFSGMPFDVTLRSFDYVTCGTALSGLPAPSLSALTTAT 87 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGG-DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSD 167 P G L+ SP L+F ++ + GG +GR + R FT E+R R+ ++ L+ +S Sbjct: 88 PWSGNVLMTLSPDLLFSVLEVMLGGREGRGRQLWKPRSFTAIERRFGGRLARMILDEFSQ 147 Query: 168 AWKAINPLEVEYVRSEMQVKFTNITTSPNDI-VVNTPFHVEIGNLTGEFNICLPFSMIEP 226 +++ ++ EV + ++ I +P+ V + +G G +P++ ++ Sbjct: 148 SFRQLS--EVSFEIDSLESAPETIAIAPSGSPAVWVTLDLTVGERGGALYFLIPYTALDT 205 Query: 227 LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI 286 +R +L P L D +WR +L +++ + + L A+ + + + + L G + + Sbjct: 206 VRPVLNQPFLGGKIGGDTSWRKDLEEKIEDTTVTLTASLHRLRVPVQEALGWRKGQTIDL 265 Query: 287 ----EKPDRIIAHVDGVPVLTSQYG-TLNGQYALRI 317 E+P ++ + Q G GQ ALR+ Sbjct: 266 GISAEQPVDVVCGER--RMFRGQMGRRATGQVALRL 299 >UniRef50_Q0FMH0 Flagellar motor switch protein fliM n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FMH0_9RHOB Length = 313 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 4/273 (1%) Query: 50 RLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKP 109 RL LE++ +RF+ L + L ++++G I + ++ P P+ +++ + Sbjct: 28 RLPMLEVVFDRFSLSLAQTLKSYLGAMAEVSLGGIDYLSCQDALKDQPDPSLISVTTAEE 87 Query: 110 LRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW 169 GT + +P L+F ++ FGG + + R FT E+R+ + L S+A+ Sbjct: 88 WGGTIAAIMTPELLFGIIEITFGGRTVATGEKKTRNFTSIEKRIGQNFTETVLTELSNAF 147 Query: 170 KAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRE 229 + P+ + E K + P V ++I GE LP + E + Sbjct: 148 AKVTPVNFDISHLETNPK-ALLLAPPTSACVRARLTIDIEGRIGEMVFVLPNTAFEKVSH 206 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDV--LPIE 287 +L D WR + + + + + A L + +L PG V L I+ Sbjct: 207 ILSQQFTGGQLGGDSGWRLKMTDMLGSTNVPMSAVMGQAVLPMRDVLAWAPGQVLDLGIQ 266 Query: 288 KPDRIIAHVDGVPVLTSQYG-TLNGQYALRIEH 319 D + G + ++ G NG+ AL++ Sbjct: 267 VDDPVTLCCAGKEIARAEVGHRKNGRIALKLSE 299 >UniRef50_C2KZ05 Flagellar motor switch protein FliM n=1 Tax=Oribacterium sinus F0268 RepID=C2KZ05_9FIRM Length = 395 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 75/353 (21%), Positives = 145/353 (41%), Gaps = 43/353 (12%) Query: 1 MGDSILSQAEIDALLNG-------DSEVKDEPTASVSGESD--------IRPYDPNTQRR 45 M D +LSQ++IDALL + +V+++P + + + YD + R+ Sbjct: 1 MAD-VLSQSQIDALLKSMQDGPPKEEKVEEKPAEVLETKKEEVQKEEETYSKYDFYSPRK 59 Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 +++++ L I + +AR + + R DITV +R Y+E+ + ++ Sbjct: 60 FTKDKIRLLRSIFDNYARILTSQVNGIFRTMTDITVLELRETRYYEYVNAFHENDCMTIV 119 Query: 106 HLKPLRGTG------LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLK 159 ++ G + SP L V ++ GG E +T E + R+++ Sbjct: 120 D-TYVQDKGKSNVPMMSYISPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIME 178 Query: 160 LALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSP--------NDIVVNTPFHVEIGNL 211 + D + Y+ +E K I T+P ++ VV +V+I L Sbjct: 179 YIVHALGDGFS-------NYISAEF--KIAKIETNPSMVQEVGLDETVVLAVMNVDISGL 229 Query: 212 TGE-FNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISL 270 E ICLP +++E + +++ N +N +D ++ ++ S + + L Sbjct: 230 AMERIRICLPGTLLEHMFKIIDNRKHLARGFAYENNQDTIMEHLKASSFPMTGQLGVVKL 289 Query: 271 RLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 + + L GDV+ + K + +V P T + G A+RIE I Sbjct: 290 DIEDLYHLKVGDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRI 342 >UniRef50_B2IJZ9 Flagellar motor switch protein FliM n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJZ9_BEII9 Length = 313 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 3/276 (1%) Query: 49 ERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 +R+ L +I +R L TV +I + + T + +IH++ Sbjct: 27 DRMPMLHVIFDRMVAQCSESLRQYSAAPAVFTVSSIGTERIGDILDAYENNTVVAIIHVQ 86 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 LV F + + ++ +GGDG P +E R ++ E ++ + L + + Sbjct: 87 AWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLSNIEIKLAQTIFDLLPKALQTS 146 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 + I+ ++ R E ++ F I N T ++ I GE + +P S + +R Sbjct: 147 FSTISETVFKFERLETKLDFAVIAPR-NTFGFITRINLRILGRHGEMFVVIPQSSLNSIR 205 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 + L ++ D W + ++ +++E+ A D L +L G VLP++ Sbjct: 206 QELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIEDSHFVLGDFTELKIGQVLPLQA 265 Query: 289 PDRIIAHVD--GVPVLTSQYGTLNGQYALRIEHLIN 322 + A ++ P+ Q G +G Y LR+E I+ Sbjct: 266 TTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFID 301 >UniRef50_C0C1P2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1P2_9CLOT Length = 336 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 77/338 (22%), Positives = 157/338 (46%), Gaps = 34/338 (10%) Query: 5 ILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 +LSQ++IDALLN +S+ E E + + YD + ++ +++L+ L+ I + + Sbjct: 4 VLSQSQIDALLNSMMNSDAA-EEPKEEKPEKNWKKYDFKSPKKFTKDKLKLLKGIYDNYG 62 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK-PLRGTG---LVVF 118 R L +LR + ++ V ++ Q Y EF+ L + +++LK P ++ Sbjct: 63 RLASSRLNGVLRTACEMEVLSVEEQRYFEFSNILSENDVMMMLNLKLPDESKNPPMMIHI 122 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 S L+ +D + GG G ++ E + +++K L+ DAW N +++ Sbjct: 123 SQKLMVNMIDRMLGGTGDDDDVDSSYTYSEIESALYKKVMKYLLDITRDAWG--NYIKIN 180 Query: 179 YVRSEMQVK---FTNIT-TSPNDIVVNTPFHVEIGNLTGEFNICLP-------FSMIEPL 227 ++ F I+ P IV+ +V++ N+ G IC+P F++I+ Sbjct: 181 LGDQRLEENPGLFQEISLDEPVAIVL---LNVKMQNIDGRITICIPGNLLMNIFNIIDKR 237 Query: 228 REL--LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 + + L + + NS R+ ++ ++ S +E+ A A+ L + ++ L GDV+ Sbjct: 238 KHVDGLYDEGIANS-------RELIMTRLNRSTMEIKAELAEAQLSMKEVCGLKVGDVID 290 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 + K ++ +V+ P + G N A++I+ I Sbjct: 291 LNKSRESDVVLYVEEQPWFRGKLGAHNKNAAVKIKQCI 328 >UniRef50_D1BCL9 Flagellar motor switch protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCL9_SANKS Length = 315 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 70/306 (22%), Positives = 132/306 (43%), Gaps = 14/306 (4%) Query: 21 VKDEPTASVSGESDIRP--YDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPD 78 V+D+ +V + +P YD + RE +A E+ E FAR + L + LR Sbjct: 7 VQDKARPAVRRQRPAQPEAYDFRRPMTLAREHGRAFEMAFETFARQWGTQLTSRLRVMVG 66 Query: 79 ITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP 138 + + + + Y E+ R LP T + L ++ R T ++ + + VD + GG G Sbjct: 67 VGLDGVEMVSYDEYVRRLPNHTTMVLCSIETTRSTAVLQVASETSMLWVDYVLGGPGLVR 126 Query: 139 TKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI 198 ++ RE T E +I ML AL A+ A+ PL+V + +F + + Sbjct: 127 EELP-RELTEIETTLITDMLSGALADLRYAFVAVVPLDVRVKAIQYNPQFVQAAPASEAV 185 Query: 199 VVNTPFHVEIGNLTGEFNICLPFS-MIEPLR--ELLVNPPLENSRNEDQNWRDNLVRQVQ 255 +V T F + + + +P ++ P+R E +V ++ E D L R + Sbjct: 186 IVAT-FTLTVAERPTTATLMIPADVLLAPMRAGEGVVQRS-KDELAEAAAASDRLHRTMS 243 Query: 256 HSQLELVANFADISLRLSQILKLNPGDVL----PIEKPDRIIAHVDGVPVLTSQYGTLNG 311 +++ +++ ++ L G+V+ P+ +P ++ VDG+ + G Sbjct: 244 TVPVDVHVRMRPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVV--VDGIVLAHGVAGNNGR 301 Query: 312 QYALRI 317 Q A +I Sbjct: 302 QLACKI 307 >UniRef50_A1SEN6 Flagellar motor switch protein FliM n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN6_NOCSJ Length = 335 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 11/279 (3%) Query: 36 RPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARN 95 +PYD ++ RE + L++ + F R + LR +++ +I + Y E+ + Sbjct: 45 QPYDFRRPIQLSREHSRMLQLAFDDFCRQATTVFTSSLRTVCGVSLASIEQRTYAEYIDS 104 Query: 96 LPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIN 155 L T L +PL G+ V VD++ GG GR + R T E V + Sbjct: 105 LDASTYLTSFSAEPLFDRGVFEIPLLAVMTCVDHMLGGPGRL--EQPERPLTEIEAGVAS 162 Query: 156 RMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEF 215 M++ L + +I E E +F + + +D++V + I + T Sbjct: 163 GMIERLLGELRYSMASIVAFEPVVKGVEYSPQFVQVAGA-SDVMVAASLELRINDRTFRM 221 Query: 216 NICLPFSMIEP--LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLS 273 +C+PFS + P LR P E R + L Q Q +E+ + +L Sbjct: 222 TMCMPFSSLLPHLLRAAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSPM 281 Query: 274 QILKLNPGDVL----PIEKPDRIIAHVDGVPVLTSQYGT 308 ++ L PGD L P P ++ VDG + GT Sbjct: 282 ELAALRPGDALRLRHPAAAPLEVV--VDGTCFAHATPGT 318 >UniRef50_Q8KA39 Flagellar motor switch protein fliM n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=FLIM_BUCAP Length = 311 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/304 (19%), Positives = 139/304 (45%), Gaps = 32/304 (10%) Query: 35 IRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPY----- 89 I + N R + + ++ LE IN++F + M + ++ + ++ ++I Y Sbjct: 18 IYKREKNLDRFLDQNEMKKLEKINKKFIQKIIMIFSSFIKSNIELNFYTVKINSYTNDDK 77 Query: 90 ---HEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVE-GRE 145 H +A +L + T L + FSP+ + + +D LFGG G +++ +E Sbjct: 78 NFKHLYANSLKIET---------LEKKSFIFFSPNFLSVFIDFLFGGKGNSIIRMDIKKE 128 Query: 146 FTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFH 205 T+TE + +++ ++ Y ++ K ++++++ + +K ND+ + F Sbjct: 129 ITYTEHVINKKIVGFIIDAYCESCKDFFYIDIKFLDFNI-IKLNKHFFYTNDLFITNYFS 187 Query: 206 VEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANF 265 + + +I +P S+I+ + ++N +N ++ ++N + S +EL Sbjct: 188 FNLNGIKIFLSILIPVSIIKEKNKKIINFLDKNIFSKKTILKENFFIE-NLSNIEL---- 242 Query: 266 ADISLRL--SQILK-----LNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 D+++ L S I K L GDV+ IE P ++ ++ P+ ++ + + + +E Sbjct: 243 -DVTVELIPSYISKHTFDNLREGDVITIEDPGKVTVCIEKKPIFLGKHKIFDEKSIIFLE 301 Query: 319 HLIN 322 ++ Sbjct: 302 KFLH 305 >UniRef50_C2KTP4 Flagellar motor switch protein FliM n=3 Tax=Mobiluncus RepID=C2KTP4_9ACTO Length = 307 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/266 (22%), Positives = 118/266 (44%), Gaps = 17/266 (6%) Query: 33 SDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEF 92 ++ + YD + ++ RE + +E+ E F R + L L + G + ++ Y ++ Sbjct: 11 AEAKVYDFSKPMKLPREYARIMELALEAFTRSWINQLVGRLHVVITGSAGDLVMRSYDDY 70 Query: 93 ARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR 152 +P T + ++ + R G++ F VD+L GG G + + R+ T E Sbjct: 71 IAKMPSTTCMVIMDFQNGRNKGILQFPRQTALAWVDHLLGGQGDIESTPD-RQLTEVEVS 129 Query: 153 VINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT 212 +++ LK + A+ + PLE + + E +F I+ P + G Sbjct: 130 ILSDFLKRVMMDLDMAFAGMLPLETKLLNLEYAPQFVQAYDGSTPILF-APITLTTGEHV 188 Query: 213 GEFNICLPFSMI-EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLR 271 + +I +P +MI + + + N ++R+E+Q ++RQ LE + ++++R Sbjct: 189 DDCSIMMPVAMITDAIHKGDANA---DTRSEEQKREAAIMRQRLVDNLEEIP--VEVAVR 243 Query: 272 LSQILKLNP--------GDVLPIEKP 289 S+ K+NP GD LP+ P Sbjct: 244 FSR-RKINPRELDGLAVGDTLPLIHP 268 >UniRef50_C6QEZ9 Surface presentation of antigens (SPOA) protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEZ9_9RHIZ Length = 322 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 18/238 (7%) Query: 95 NLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVI 154 NLP T ++ + R + P+L + V++ G +G PT + R T T+ ++ Sbjct: 73 NLPPNTYAGVVRAERWRNWLYFISDPTLTALFVESALGCEGLPPTGLTERRLTKTDANIL 132 Query: 155 NRMLKLALEGYSDAWKAINPLEVEY--VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT 212 M + S A+ + ++++ V +++++ T+SP V++ +E T Sbjct: 133 RVMFRRVTRALSHAFSILVDVQLDLGDVVDKIELEPQLSTSSP---VISARLAIEYFGQT 189 Query: 213 GEFNICLPFSMIEPLRELL----------VNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 G I +P + IEP+R+LL PP + + D +W L ++ + + L Sbjct: 190 GILTIVIPQAAIEPVRDLLAVASAGEAVGAAPPSARAYD-DTSWSKQLSEEIARAFIGLN 248 Query: 263 ANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIE 318 + + L ++ + G V+ + R+ D +P+ + G +G LRIE Sbjct: 249 GILEERPISLGEVQRFAVGSVVELTSTSLARVRLDADEIPLFWCELGKRDGTLTLRIE 306 >UniRef50_C7M221 Surface presentation of antigens (SPOA) protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M221_ACIFD Length = 302 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 110/256 (42%), Gaps = 5/256 (1%) Query: 32 ESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHE 91 E +R D R + LE++ E R + LRR + +G + P+ + Sbjct: 9 ERQVRTVDFRLPHSFDRAEQRGLELLVENALRPAATLMGASLRRGVRLELGRMDQLPWEQ 68 Query: 92 FARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQ 151 P + L PL G++ F +D G + +E R T EQ Sbjct: 69 VVAQQDGPALVISFALVPLGSRGVLRFGADAALRLLDLRLG---GDGSPIEPRALTELEQ 125 Query: 152 RVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN- 210 ++ ++ L + + + + + ++ V +E ++F + SP ++ + P + IG+ Sbjct: 126 GLLVQVFSDLLVQLASSLQTLLDVRLDRVGAETSLEFVQVI-SPGEMCLVVPIALGIGDE 184 Query: 211 LTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISL 270 L E + LP+SM+ P+ EL+ + +RD L ++ +LE+ F S+ Sbjct: 185 LESELTLYLPYSMLRPVVELIAQRAIVAVDRGGDTFRDLLAARLHDVRLEVSVRFEPTSI 244 Query: 271 RLSQILKLNPGDVLPI 286 +L+L PGDV+P+ Sbjct: 245 SSRTLLELAPGDVVPL 260 >UniRef50_A3T063 Flagellar motor switch protein n=2 Tax=Sulfitobacter RepID=A3T063_9RHOB Length = 318 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/268 (19%), Positives = 105/268 (39%), Gaps = 5/268 (1%) Query: 49 ERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 +RL L+II +R + + L +L+R + ++ ++ P + LP PT L + Sbjct: 31 DRLPMLDIIGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEGLPKPTFLAVGTGH 90 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 P G LVV +++ AV+ + GG+ + FT E R+ + Sbjct: 91 PFVGEILVVMDQTVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGERLASAVFAELERS 150 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 + +E R E + + I + + + + + TG ++ +P+ +E + Sbjct: 151 LSVVGAANLELDRIETEAEGAAIAKNTS-LCARLRLSLTLAGNTGNLDLVIPYDALEQIL 209 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI-- 286 L + WR + Q++ + ++L ++ L +I+ PGD + Sbjct: 210 PDLGKVYFGDRMVSQDQWRGLIGAQIERANVDLDVVLSENVFPLQKIMSWRPGDTIDFGI 269 Query: 287 -EKPDRIIAHVDGVPVLTSQYGTLNGQY 313 E D + D P+ G N Y Sbjct: 270 EEGRDATVTCAD-TPMFNVSLGKRNNGY 296 >UniRef50_B9L5A2 Flagellar motor switch protein FliM n=2 Tax=Thermomicrobia (class) RepID=B9L5A2_THERP Length = 334 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 26/309 (8%) Query: 37 PYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL 96 PYD + ++ +++++ I+E F R L +R + +G I ++ L Sbjct: 22 PYDFRRPDKFSKDHIRSIQSIHEAFDRFASNYLSAQVRSAVHCELGPIEQTTLGDYLDRL 81 Query: 97 PVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINR 156 P L + L+PL G ++ + VD + GG G T E ++ Sbjct: 82 PSQVVLCIAELEPLVGRIVLEIDFATASRLVDRMLGGAGEERPPFTATTITEIELLLLRE 141 Query: 157 MLKLALEGYSDAWKAI---NPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTG 213 + + AW+ + P E V S Q++ P++IV+ V + G Sbjct: 142 LGNGLFGELAAAWEQVIRLQPQPCEVVLSGQQIQ----GMMPSEIVLLVQHQVRLFESEG 197 Query: 214 EFNICLPFSMIEPL------RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFAD 267 F + LP S +EP+ R L NP R +L+ Q++ L+L Sbjct: 198 TFTVVLPASTLEPVLPRLNARVLFANP----RRATSPQVIADLMAQLEEVSLQLRVELGR 253 Query: 268 ISLRLSQILKLNPGDVLPIEKPDR--IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPIL 325 L + ++L L PGDVL +++ + +V+ P + G A+RI Sbjct: 254 ARLTVRELLALEPGDVLVLDQDVSFPLAVYVENEPCFYAFPGQRGRSLAIRIA------- 306 Query: 326 NSLNEEQPK 334 +L E+ P+ Sbjct: 307 GTLTEDWPR 315 >UniRef50_D2LCZ9 Flagellar motor switch protein FliM n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCZ9_RHOVA Length = 314 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/204 (20%), Positives = 94/204 (46%), Gaps = 2/204 (0%) Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 LVF VD ++GGDG + R FT E ++ + + ++++++ + + + R Sbjct: 101 LVFSIVDAMYGGDGSELPYEDKRSFTALETKIGRVICEFGARSFTESFRTVGEITLAPER 160 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 +E + F ++ N ++++ ++ ++ G + +P +++ P+R+ L + Sbjct: 161 TETALDFASL-GQHNMMLIHAQILFQVLDVGGVMFVLIPQNVLLPVRQKLERQRAPMLSS 219 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDR-IIAHVDGVP 300 D W L ++V +++ + A + L Q+ KL G L +E +R I +G Sbjct: 220 VDPRWTSLLSQRVSRAEVTMDAVILGKEIELGQMFKLEVGKTLELEGTERNIFFEYEGDR 279 Query: 301 VLTSQYGTLNGQYALRIEHLINPI 324 + G G Y + I+ ++ I Sbjct: 280 LFRGCLGRERGTYTVTIDEALSDI 303 >UniRef50_Q8GKQ6 FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP RepID=Q8GKQ6_9THEM Length = 165 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Query: 168 AWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL 227 AW +++P +E +F I S +++V+ F V G + G ++C P S+IEP+ Sbjct: 1 AWMSVHPFIPVVESTETNPQFVQIVPS-SEMVLAITFFVSFGKVEGYMSLCWPSSVIEPI 59 Query: 228 RELLVNPPLENSRNED--QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 E L + ++ + + L +Q ++++++A + L L +IL L GDV+ Sbjct: 60 GEKLTTQSWFKVKQKEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVIR 119 Query: 286 I----EKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + ++P R+ V+G + G G YA++I +I Sbjct: 120 LKEHYDEPIRV--EVNGRTKFLGKPGQYKGNYAVKITEVIE 158 >UniRef50_B9IWG1 Flagellar motor switch protein FliM n=70 Tax=Bacillales RepID=B9IWG1_BACCQ Length = 328 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 134/309 (43%), Gaps = 16/309 (5%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPT-ASVSGESD-IRPYDPNTQRRVVRERLQALEIIN 58 M LSQ +IDALL +E ++ P A +G+ D + YD N + E L++L+ I Sbjct: 1 MSGDKLSQEQIDALLKAVNEGEEMPAFAQEAGKQDKFQEYDFNRPEKFGVEHLRSLQAIA 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPY-HEFARNLPVPTNLNLIHLKPLRGTGLVV 117 F + L +R D+ + P+ E+ +P L + L G +V Sbjct: 61 STFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIV 120 Query: 118 FSPSLVFIAV--DNLFGGDGR--FPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 L F+ + GGD + F + R T E ++ + L + +++++ Sbjct: 121 IEIDLAFVIYIHECWLGGDSKRNFTMR---RPLTAFEFLTLDNIFALLCKNLEQSFESVV 177 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDI-VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV 232 ++ +V +E ITT+ + I ++N + N T I +PF +E + + L Sbjct: 178 AIKPTFVTTETDPNALKITTASDIISLLNVNMKTDFWNTT--VRIGIPFLSVEEIMDKLT 235 Query: 233 NPPL-ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--P 289 + + E+S ++ + + + +V + + + + +I ++ GD++P+ Sbjct: 236 SENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDIIPLHTKVS 295 Query: 290 DRIIAHVDG 298 D ++ VDG Sbjct: 296 DELLGFVDG 304 >UniRef50_Q1GNY8 Surface presentation of antigens (SPOA) protein n=1 Tax=Sphingopyxis alaskensis RepID=Q1GNY8_SPHAL Length = 312 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 21/287 (7%) Query: 43 QRRVVRERLQALEIINERFARHFRMGLFNLLRR--SPDITV---GAIRIQPYHEFARNLP 97 +R ALE + +FAR R +L+R +P + V GA ++ + E++ Sbjct: 31 RRAAASYAFPALESVANQFARSLR----DLVRALGAPGVQVERSGAEQLS-FAEWS-GAA 84 Query: 98 VPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRM 157 P H PL+G L+ + L+ VD +GG G+ + E E T E R R+ Sbjct: 85 APAIFWRYHAPPLKGPLLIAAARPLLLQLVDIFYGGRGQLGGERE--ELTDAEDRFAARL 142 Query: 158 LKLALEGYSDAWK---AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGE 214 + + AW+ I P E++ V + K + +D + F + L G Sbjct: 143 GRDIGMQIAAAWRDKLVIEP-ELDCVTGD-PAKLAAVRA--DDELFVQRFTLRGAPLDGR 198 Query: 215 FNIC-LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLS 273 C P + + + + P ++ D W L + ++ +L + + A + L Sbjct: 199 TIACAYPVAALRGIAGDELLPDMQGGNGGDPAWTGALDKALRGVRLPVRSVLARPEISLV 258 Query: 274 QILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 ++L L GD++P+ P + V G G NG A+ I+H+ Sbjct: 259 KLLALEVGDIIPLSMPRHVPVTVAGRSFAFGSIGEANGNAAILIDHI 305 >UniRef50_B8EL07 Surface presentation of antigens (SPOA) protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EL07_METSB Length = 314 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 3/206 (1%) Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 L+ +F + LFGGDG +GR+ + E R+ ++ L L A+ ++ Sbjct: 94 LIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKALDLFGRALQSAFSTVSD 153 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + R E ++ F I N V + I GE I +P + + +R+ L Sbjct: 154 TAFKLERVETRLDFAVIAPR-NAFGVTAKIKLRILGRHGEMFILIPQAALNSVRQQLGRN 212 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRI 292 +++ D W + ++ +++E+ + L I L G +L ++ R+ Sbjct: 213 LSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDIADLKVGGILQLKSTPSTRV 272 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIE 318 + P+ G +G Y LRI+ Sbjct: 273 RLECNAEPLFWCNLGQGDGVYTLRID 298 >UniRef50_B9T9Y1 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9T9Y1_RICCO Length = 104 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 52/95 (54%) Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 MIEP+RE L + + D+ W +L V + + + A+ + L I+ L PGD Sbjct: 1 MIEPIRETLDAGMQSDVDDIDERWVRSLREDVMSASVVVNGTIAEKDVALRDIIDLEPGD 60 Query: 283 VLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 V+P++ ++I+ +GVP++ ++ G G AL+I Sbjct: 61 VIPVDLGEKIVLTANGVPIMYARLGQSRGNLALQI 95 >UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=Bacteria RepID=FLIY_BACSU Length = 378 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 21/211 (9%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LSQ EIDALLNG DEP P ER EI N F Sbjct: 6 LSQDEIDALLNGTGSTLDEPEI------------PEVDDLSEMERDAIGEIGNISFGSS- 52 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPSLVF 124 L LL + DIT ++ + P + + P P + + + + G+ L+V S Sbjct: 53 ATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGFSGSNLLVVEQSDAA 112 Query: 125 IAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA---INPLEVEYVR 181 I D + GGDG+ G Q +N+M+ A S + I+P VE + Sbjct: 113 IIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFSKKIDISPPRVELLD 172 Query: 182 SEMQVKFTNITTSPND-IVVNTPFHVEIGNL 211 + I P+D ++V F++++G L Sbjct: 173 VTEEKGTDRI---PDDEMLVKVSFNLKVGEL 200 >UniRef50_UPI000169865A flagellar motor switch protein FliM n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169865A Length = 111 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 224 IEPLRELLVNPPLENSRNE-DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 +EP+RELL + +++ R E D+ W +L ++ +++EL + + + L ++ KL+ GD Sbjct: 1 MEPIRELL-DAGVQSDRGERDERWERSLREEILGAKIELKSILTETCVTLRELSKLDKGD 59 Query: 283 VLPIEKPDRIIAHVDGVPVLTSQYGTL 309 ++PIE P+ + VPVL Q G L Sbjct: 60 IIPIELPEEVEVTAAEVPVLPRQAGGL 86 >UniRef50_Q21AD3 Flagellar motor switch protein FliM n=3 Tax=Bradyrhizobiaceae RepID=Q21AD3_RHOPB Length = 311 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/206 (19%), Positives = 91/206 (44%), Gaps = 3/206 (1%) Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 L+ F ++ ++ LFG DG P R F++ E V + + + ++ + Sbjct: 91 LIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVEMHVAQALFERFGKALQSSFSRASD 150 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + R E ++ + + N++ V ++ + GE I +P + + P+R+ L Sbjct: 151 VNFTLERVETRMDYLAVG-RLNNMAVCANILLQGLDRGGEMFIVIPHAALNPIRQALSQI 209 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI-EKPDRII 293 S + D NW L +++ +++ L A + L ++ + G V+ + P+ ++ Sbjct: 210 VTGESASTDPNWSRQLHSEIKRTEVVLKAVLEERPFTLGEVAGFHVGQVIKLNATPNTMV 269 Query: 294 -AHVDGVPVLTSQYGTLNGQYALRIE 318 + + Q G LNG Y+L+++ Sbjct: 270 RLECNNQRLFWCQLGQLNGVYSLQVK 295 >UniRef50_C7R0I8 Flagellar motor switch protein FliM n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0I8_JONDD Length = 308 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 12/287 (4%) Query: 38 YDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLP 97 YD + RE + +E+ E FAR + L + LR I + + + Y E+ L Sbjct: 20 YDFRRPMTIAREHARIVEMACETFARQWATQLTSRLRVMASIELDKLEMVTYDEYIATLD 79 Query: 98 VPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRM 157 T L L R T L+ + + +D L GG G + RE T E + + Sbjct: 80 PHTTLVLFTADETRSTALLQIPSNTTMLWLDYLLGGPG-LERQENPRELTEIETALFRSL 138 Query: 158 LKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNI 217 L +L A+ +I P+ + + +F + ++V + + +G+ + Sbjct: 139 LDSSLADMRYAFSSITPMNPKIRGLQYNPQFVQAVPASEAVLVAN-YSLTVGDRVSAATM 197 Query: 218 CLPF-SMIEPLR--ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQ 274 +++ PL+ E +P R E + + L + +++ F I++R Sbjct: 198 MFAADALLNPLKVGEGEADPSAAQ-REEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRD 256 Query: 275 ILKLNPGDVLPI----EKPDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 I+ + GDV+ + KP RI+ V+G + G Q A+++ Sbjct: 257 IIDMAVGDVIELRHAASKPLRIV--VEGRTIGHGVPGNNGKQLAVKV 301 >UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmicutes RepID=Q0AYM4_SYNWW Length = 398 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 104/260 (40%), Gaps = 40/260 (15%) Query: 1 MGDSILSQAEIDALLNGDSEVKD----EPTASVSGESDIRPYDPNTQRRVVRERLQALEI 56 M D ILSQ EIDALL G S V D + ++ ++ +T V Sbjct: 1 MNDGILSQEEIDALLTGSSPVTDTIGSSSDPVSTSSINLSDFEKDTLGEV---------- 50 Query: 57 INERFARHFRMG-----LFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPL 110 + MG L LLR+ IT + + E P+P + + + + + Sbjct: 51 ------GNISMGTAATTLSTLLRKKVSITTPDVSVTNPEELQLLYPLPFLVVEVSYTQGV 104 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVI----NRMLKLALEGYS 166 GT ++V I D + GGDG EG+ E + N+M+ A S Sbjct: 105 TGTNVLVIKEEDAAIIADLMMGGDG---LSAEGKNLGDLELSAVGEAMNQMMGSATTSLS 161 Query: 167 DAWKA---INPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFS 222 + I P ++ + +M +F ++TS +D VV F +EI NL E +P Sbjct: 162 SMFNQRIDIAPPQLTVI--DMGKEFLQLSTSFDD-VVKIKFKMEIENLINSEIMQIIPME 218 Query: 223 MIEPLRELLVNPPLENSRNE 242 +E + +L+ E S E Sbjct: 219 AVENIMSILLGSTAEESSAE 238 >UniRef50_B8DI83 Flagellar motor switch protein n=18 Tax=Listeria RepID=B8DI83_LISMH Length = 330 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 12/293 (4%) Query: 1 MGDSILSQAEIDALLNGDSEVK--DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D LSQ +IDALL+ SE K DE T + PYD + + E L++L+ I Sbjct: 1 MSDK-LSQEQIDALLSQISEGKVVDEST-EIGDFGRFHPYDFHKPEKFGAEHLESLKTIA 58 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRG--TGLV 116 F + M + R P T + Q +P + + + L G + Sbjct: 59 SAFTKK-SMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELGQI 117 Query: 117 VFSPSLVFIAV--DNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 + L +I + L GG+ + E R + E+ + +L+ E D++K+++P Sbjct: 118 IIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSVHP 176 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + E V E + TSPND++ ++ I +PF +E + L N Sbjct: 177 ISPEIVNIETNPALLRV-TSPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN- 234 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 +E + ++ +N+ + +++ + E +I ++ KL GDVL E Sbjct: 235 VVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTE 287 >UniRef50_Q0G106 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G106_9RHIZ Length = 321 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%) Query: 215 FNICLPFSMIEPLRELLVNP-PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLS 273 + LP S + R +L P PL + D+ W + +VR + S L L A A + L+ Sbjct: 200 LTLALPSSYLSLHRRVLSEPLPLPQP-SPDETWSEAMVRNFEKSGLHLEAVLARKQVPLA 258 Query: 274 QILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 ++ G L ++ + I +G P+ SQ G G Y R E ++P +N Sbjct: 259 EVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSYVARFEEAVDPTQEFIN 316 >UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion protein n=3 Tax=Clostridiales RepID=C7ILI0_9CLOT Length = 400 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 36/255 (14%) Query: 1 MGDSILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 MGD +L+QAEIDALLNG SE DE T S S NT+ +E + AL I Sbjct: 1 MGD-MLTQAEIDALLNGTSSSEEPDEATGSNS----------NTETLTSQE-IDALGEIG 48 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVV 117 LF LL + IT + + + E +++ + + + L G+ L++ Sbjct: 49 NISMGTSATTLFTLLSQKVTITTPNVTLSTWEELSKSYSSQYVAVKVEYTDGLIGSNLLI 108 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVI----NRMLKLALEGYSDAWKA-- 171 V I D + GG+G K+EG + T I N+M+ + S + Sbjct: 109 LKQDDVKIITDLMMGGEG---VKIEG-DLTDLHLSAISEAMNQMIGSSATSMSSMFSKRI 164 Query: 172 -INP---LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEP 226 I+P V + S+ +F P++ +V F + +GNL E LP + Sbjct: 165 DISPPKAYTVSFDSSDPYGEF-----RPDEYLVKIAFKMVVGNLIDSEIMQLLPIKFAKE 219 Query: 227 LRELLVNPPLENSRN 241 L L+N E+ R+ Sbjct: 220 LVSSLLNST-EDKRD 233 >UniRef50_Q44457 Flagellar motor switch protein fliM n=11 Tax=Rhizobium/Agrobacterium group RepID=FLIM_AGRT5 Length = 321 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Query: 200 VNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR--NEDQNWRDNLVRQVQHS 257 V ++IG ++ EF++ +P PL + + P +++ + + W D + +QV+ S Sbjct: 185 VTIRMKIDIGKVSSEFSLIVPQ---RPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRS 241 Query: 258 QLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHV--DGVPVLTSQYGTLNGQY 313 Q+ L A +L L I +L GDV+P + K D I V +G + ++G +Y Sbjct: 242 QVTLEARIKLETLTLRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRY 301 Query: 314 ALRIEH 319 +R+++ Sbjct: 302 MVRVKN 307 >UniRef50_D2UDN4 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDN4_XANAL Length = 346 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 52/99 (52%) Query: 219 LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKL 278 LPF E + + PP+ +S ++D ++ V +EL F ++L+L+++ L Sbjct: 239 LPFPYQEQVSQTPSVPPVAHSVDDDPAPNESSPIWVGELPVELSFAFEPLALKLAELSAL 298 Query: 279 NPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 PGDV+P+E R++ H +G PV ++ + G A + Sbjct: 299 RPGDVVPLESGVRLLIHANGRPVGEAELVEVEGVLAAEV 337 >UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF88_BREBN Length = 455 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 10/168 (5%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M +LSQ EIDALL ++ V+DE A + D+ + ++ + EI N Sbjct: 1 MSRDMLSQDEIDALLRANNLVEDEEEAVSAVTQDVAEFLSPFEQDALG------EIGNIS 54 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 F L LL + DIT + + E P+P +++ + +G L+V Sbjct: 55 FGSA-ATALSTLLSQKVDITTPTVSVVNVDELESEFPIPHVAVHVEYTDGFKGINLLVIR 113 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREF-THTEQRVINRMLKLALEGYS 166 + D + GGDGR P E E Q +N+M+ A S Sbjct: 114 MEDAAVIADLMMGGDGR-PASTEMSELHISAVQEAMNQMMGSAATSMS 160 >UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSG7_BACS4 Length = 398 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 15/248 (6%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQAL-EIINERFAR 63 +LSQ EI+ALLNG + +D+ ES I N + + AL EI N F Sbjct: 4 MLSQEEINALLNGINLDEDDKDTEEKQESTI-----NIEDYLSSIEQDALGEIGNISFGS 58 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPSL 122 L LL + DIT + I E + P P +++ + G L+V + Sbjct: 59 S-ATALSTLLNQKVDITTPRVSIVKSSELDQQFPKPHIAVSVQYTVGFEGMNLLVIKNTD 117 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA---INPLEVEY 179 I D + G DG + G Q +N+M+ A S + I+P +VE Sbjct: 118 AAIIADLMLGNDGTNAGEELGEMQISAVQEAMNQMMGSASTSMSQIFNKRVDISPPDVEQ 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRELLVNP-PLE 237 + ++ +T +D+++ F +++G L + + + + + L+NP P+E Sbjct: 178 LN--LKEDPDKVTFPDDDVMLQISFDLKVGTLIDSKIMQLVSVEFAKDMVDQLLNPEPIE 235 Query: 238 NSRNEDQN 245 + +D N Sbjct: 236 DITEKDAN 243 >UniRef50_A0Z384 Flagellar motor switch protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z384_9GAMM Length = 323 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 22/223 (9%) Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 +KPL G + F + V+ FGG K+ G+ T +EQR+ ++ K L Sbjct: 105 EIKPLEGESHLEFPGDFLSFLVNQYFGGSTVASPKLAGK-VTPSEQRLSEQLAKDVLRTL 163 Query: 166 SDAWK---AINPLEVEYVRSEMQVKFTNITTS-----PNDI-VVNTPFHVEIG-NLTGEF 215 + W A+ P ++ + +ITT P D+ V + V G + GEF Sbjct: 164 VEVWSDRLALEPGDL----------YVDITTDRLSLLPADMGYVVLTYSVACGSDYQGEF 213 Query: 216 NICLPF-SMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQ 274 + LP+ SM L+ E + W L V +EL + + L Sbjct: 214 RLLLPYESMALQAPRLMPARREEPEVVVEPEWEARLQSAVPEIDVELCGVVSLLETSLRN 273 Query: 275 ILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 +L G V+PI++P V+G + +YG + A++I Sbjct: 274 LLAFKVGTVIPIDEPQTAQLMVEGRGIARGKYGAHDSSRAVQI 316 >UniRef50_Q1YLL0 Possible flagellar motor switch protein fliM n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YLL0_MOBAS Length = 348 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 204 FHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVA 263 F + + +L+ LP ++ P L PP + +++W + + S L L A Sbjct: 216 FDLTVASLSTTITFALPGALFAPHLRFLREPPKMPPPDREESWSNAIKESFAKSDLRLSA 275 Query: 264 NFADISLRLSQILKLNPGDVLPIE-KPDRIIA-HVDGVPVLTSQYGTLNGQYALRIEHLI 321 + L I GD +P++ + +IA + P+ + G Y +RIE I Sbjct: 276 IVTKKKIDLGTIAGFAVGDTIPLDVSANSLIAIECEDQPLFRAHMGRSRDSYVVRIEERI 335 Query: 322 NP 323 +P Sbjct: 336 DP 337 >UniRef50_Q18D13 Putative flagellar motor switch protein n=5 Tax=Clostridium difficile RepID=Q18D13_CLOD6 Length = 293 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/294 (19%), Positives = 120/294 (40%), Gaps = 19/294 (6%) Query: 33 SDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEF 92 +D++ YD + RE L L + F + ++ + L+ + + V +I Y F Sbjct: 2 NDMKEYDFGKPQSYSRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTF 61 Query: 93 ARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR 152 + + ++P+ S+ + +D GG G K RE T +++ Sbjct: 62 LDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITSGGTG--VVKDNDRELTELDKK 119 Query: 153 VINRMLKLALEGYSDAWKAINPLE----VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEI 208 V+ ++ D + ++ E ++ + + + + SP V V Sbjct: 120 VLLHLM-------DDLVRNMHLFEGFENIQVLDTHTHINLPQLC-SPTAPVCVVDLKVLN 171 Query: 209 GN-LTGEFNICLPFSMIEPLRELL-VNPPLENSRNED-QNWRDNLVRQVQHSQLELVANF 265 N G ++C P++ +E L E + V +N +D + + + V + +L ++A Sbjct: 172 DNECIGSVSLCFPYNGLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEI 231 Query: 266 ADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRI 317 +S+ + +LKL GDV+ K D I V+ T+ G ++ + ++I Sbjct: 232 GKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKI 285 >UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Thermotogaceae RepID=A6LMJ7_THEM4 Length = 370 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 95/239 (39%), Gaps = 30/239 (12%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MGD LSQ E+D+LL+ E ++E T + ++ + E I Sbjct: 2 MGDEQFLSQEELDSLLSQIDESQNELT--------------DLEKDMFGE-------IGN 40 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK-PLRGTGLVVF 118 L LL R DITV A+ I+ E + + I+ K + G +V Sbjct: 41 IIMGSGTTALSTLLGRKVDITVPAVEIKKLKEIREEVKGKNAVVSINFKGEIEGLNALVL 100 Query: 119 SPSLVFIAVDN-LFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA---INP 174 P + + N + GGDG T +N+M+ A SD K I P Sbjct: 101 -PQMAVARIANIMMGGDGNVETDEVDEISLSAVSEAMNQMMGAAATSLSDMLKKTVDITP 159 Query: 175 LEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELL 231 VE + E VKF + ++ +DIV F +EI L +F + + ++ L LL Sbjct: 160 PTVELLDFDEEDVKFPPVVSNDDDIVAKVNFKLEIEGLEPADFFLTMSPPFVKKLYRLL 218 >UniRef50_A9CYK4 Flagellar motor switch transmembrane protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CYK4_9RHIZ Length = 315 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 204 FHVEIGNLTGEF-NICLPFSMIEPLRELLVNPPLENSRNE----DQNWRDNLVRQVQHSQ 258 FH L +F ++ P ++I P LL P+ + +N D +W + L +V SQ Sbjct: 180 FHAAAITLELQFGSVVTPLTLILPQSILLKTKPITSKKNAPNAVDDDWAERLNARVSRSQ 239 Query: 259 LELVANFADISLRLSQILKLNPGDVLPIEKPDRI--IAHVDGVPVLTSQYGTLNGQYALR 316 + L A A L + +I +L GD++ + I +G + T G +Y ++ Sbjct: 240 INLQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVK 299 Query: 317 IEHLINP 323 +E P Sbjct: 300 VEGDAGP 306 >UniRef50_Q11LL7 Surface presentation of antigens (SPOA) protein n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LL7_MESSB Length = 311 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 6/118 (5%) Query: 204 FHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVA 263 F + G ++G LP +I R P E+ W+ +V+ S +++ A Sbjct: 183 FSLGAGPVSGILTAWLPHRIILKARA----PAAEDDSPAHTQWKQRFGEEVRRSTVQVTA 238 Query: 264 NFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 L L + L PG VL +++ P V PV ++G L Y +RI Sbjct: 239 TIPLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQ 296 >UniRef50_O54246 Flagellar motor switch protein fliM n=3 Tax=Rhizobiaceae RepID=FLIM_RHIME Length = 315 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 206 VEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANF 265 + +G + F++ +P S + R + E+ RN W + L QV+ S + L A Sbjct: 187 IGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGED-RNAKTEWTEQLEEQVRRSAVALEARI 245 Query: 266 ADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIE 318 SL L + +L GDV+P R+ +G + ++G +Y +R++ Sbjct: 246 RLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVK 300 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P06974 Flagellar motor switch protein fliM n=208 Tax=Pr... 433 e-120 UniRef50_D2T5W7 Flagellar motor switch protein FliM n=2 Tax=Erwi... 360 3e-98 UniRef50_Q0K3R1 Flagellar motor switch protein n=57 Tax=Proteoba... 356 9e-97 UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natr... 352 1e-95 UniRef50_A3EQZ9 Flagellar motor switch protein FliM n=2 Tax=Lept... 346 5e-94 UniRef50_B5YIZ4 Flagellar motor switch protein FliM n=1 Tax=Ther... 340 5e-92 UniRef50_C6HWH3 Flagellar motor switch protein FliM n=1 Tax=Lept... 335 2e-90 UniRef50_Q2LT03 Flagellar motor switch protein n=1 Tax=Syntrophu... 331 3e-89 UniRef50_B0THB4 Flagellar motor switch protein flim n=5 Tax=Clos... 326 6e-88 UniRef50_C1TKI5 Flagellar motor switch protein FliM n=1 Tax=Deth... 326 9e-88 UniRef50_Q6MI46 Flagellar motor switch protein FliM n=1 Tax=Bdel... 324 3e-87 UniRef50_C0QAJ4 FliM n=1 Tax=Desulfobacterium autotrophicum HRM2... 324 3e-87 UniRef50_C8WWF8 Flagellar motor switch protein FliM n=2 Tax=Alic... 324 4e-87 UniRef50_B8FTQ9 Flagellar motor switch protein FliM n=3 Tax=Clos... 323 5e-87 UniRef50_Q51465 Flagellar motor switch protein fliM n=158 Tax=Pr... 323 6e-87 UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clo... 321 2e-86 UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halo... 319 9e-86 UniRef50_D2R066 Flagellar motor switch protein FliM n=4 Tax=Plan... 318 1e-85 UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Ther... 317 2e-85 UniRef50_B8FK38 Flagellar motor switch protein FliM n=1 Tax=Desu... 317 3e-85 UniRef50_A9KNE7 Flagellar motor switch protein FliM n=1 Tax=Clos... 316 5e-85 UniRef50_C0GJF2 Flagellar motor switch protein FliM n=1 Tax=Deth... 315 2e-84 UniRef50_P23453 Flagellar motor switch protein fliM n=32 Tax=Bac... 313 4e-84 UniRef50_C4Z5H1 Flagellar motor switch protein FliM n=7 Tax=Bact... 313 5e-84 UniRef50_Q1NVK6 Surface presentation of antigens (SPOA) protein:... 312 1e-83 UniRef50_A8F895 Flagellar motor switch protein FliM n=10 Tax=The... 311 3e-83 UniRef50_Q31FP9 Flagellar motor switch protein FliM n=1 Tax=Thio... 307 2e-82 UniRef50_C6BTE8 Flagellar motor switch protein FliM n=13 Tax=Des... 307 3e-82 UniRef50_Q57511 Flagellar motor switch protein fliM n=33 Tax=Spi... 307 4e-82 UniRef50_Q3ADB8 Flagellar motor switch protein FliM n=6 Tax=Clos... 303 6e-81 UniRef50_A6M1D3 Flagellar motor switch protein FliM n=26 Tax=Clo... 300 4e-80 UniRef50_B8I3P2 Flagellar motor switch protein FliM n=2 Tax=Clos... 299 9e-80 UniRef50_A6TKX0 Flagellar motor switch protein FliM n=4 Tax=Clos... 296 7e-79 UniRef50_C1SNF9 Flagellar motor switch protein FliM n=1 Tax=Deni... 295 1e-78 UniRef50_A5D0K2 Flagellar motor switch protein n=1 Tax=Pelotomac... 295 1e-78 UniRef50_Q30SP5 Surface presentation of antigens (SPOA) protein:... 295 2e-78 UniRef50_A9BEY4 Flagellar motor switch protein FliM n=1 Tax=Petr... 294 4e-78 UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobac... 293 7e-78 UniRef50_UPI00016C0DBD flagellar motor switch protein FliM n=1 T... 291 2e-77 UniRef50_C6NYG8 Flagellar motor switch protein FliM n=1 Tax=Acid... 288 2e-76 UniRef50_Q7UNV1 Flagellar motor switch protein fliM n=1 Tax=Rhod... 288 2e-76 UniRef50_C8W1I5 Flagellar motor switch protein FliM n=1 Tax=Desu... 287 3e-76 UniRef50_Q2NX04 Flagellar motor switch protein FliM n=1 Tax=Soda... 283 8e-75 UniRef50_B3EAW6 Flagellar motor switch protein FliM n=9 Tax=Desu... 281 2e-74 UniRef50_A8U604 Flagellar motor switch protein fliM n=1 Tax=Carn... 281 2e-74 UniRef50_C2ED82 Flagellar motor switch protein FliM n=5 Tax=Lact... 280 4e-74 UniRef50_A9HHK3 Flagellar motor switch protein FliM n=1 Tax=Gluc... 280 6e-74 UniRef50_B5Y7E9 Flagellar motor switch protein FliM n=1 Tax=Copr... 278 2e-73 UniRef50_Q5ZUK6 Flagellar protein n=4 Tax=Legionella pneumophila... 277 3e-73 UniRef50_Q2RZE2 Flagellar motor switch protein FliM n=2 Tax=Rhod... 276 7e-73 UniRef50_B0MPD5 Putative uncharacterized protein n=1 Tax=Eubacte... 275 1e-72 UniRef50_C6N2P9 Flagellar motor switch protein FliM n=1 Tax=Legi... 274 3e-72 UniRef50_Q5FT23 Flagellar motor switch protein FliM n=1 Tax=Gluc... 272 1e-71 UniRef50_B6IQ99 Flagellar motor switch protein FliM n=2 Tax=Rhod... 271 3e-71 UniRef50_C8WYW2 Flagellar motor switch protein FliM n=1 Tax=Desu... 265 2e-69 UniRef50_A8ERA3 Flagellar motor switch protein FliM n=1 Tax=Arco... 260 4e-68 UniRef50_P34009 Flagellar motor switch protein fliM n=45 Tax=Alp... 259 8e-68 UniRef50_A0LT67 Flagellar motor switch protein FliM n=1 Tax=Acid... 259 2e-67 UniRef50_B0P9Y0 Putative uncharacterized protein n=1 Tax=Anaerot... 256 8e-67 UniRef50_Q1Q6R4 Similar to flagellar motor switch n=1 Tax=Candid... 256 9e-67 UniRef50_Q1YV70 Flagellar motor switch protein FliM n=1 Tax=gamm... 252 9e-66 UniRef50_Q1JZS7 Flagellar motor switch protein FliM n=1 Tax=Desu... 248 2e-64 UniRef50_A6Q2L2 Flagellar motor switch protein FliM n=4 Tax=Bact... 247 6e-64 UniRef50_B9KJD8 Flagellar switch protein n=8 Tax=Rhodobacterales... 247 6e-64 UniRef50_A6DWS9 Flagellar switch protein FliM n=1 Tax=Roseovariu... 246 1e-63 UniRef50_Q4JMS1 Predicted flagellar motor switch protein n=2 Tax... 244 2e-63 UniRef50_A5FX59 Flagellar motor switch protein FliM n=1 Tax=Acid... 244 3e-63 UniRef50_A0LDL0 Flagellar motor switch protein FliM n=4 Tax=cell... 244 3e-63 UniRef50_A5V6A6 Flagellar motor switch protein FliM n=1 Tax=Sphi... 241 2e-62 UniRef50_D2S983 Flagellar motor switch protein FliM n=1 Tax=Geod... 241 3e-62 UniRef50_B1ZR35 Flagellar motor switch protein FliM n=3 Tax=Verr... 238 2e-61 UniRef50_B9L5A2 Flagellar motor switch protein FliM n=2 Tax=Ther... 237 4e-61 UniRef50_C2KZ05 Flagellar motor switch protein FliM n=1 Tax=Orib... 237 5e-61 UniRef50_Q01VK1 Flagellar motor switch protein FliM n=1 Tax=Cand... 236 9e-61 UniRef50_A9W0F0 Flagellar motor switch protein FliM n=7 Tax=Alph... 235 1e-60 UniRef50_C0C1P2 Putative uncharacterized protein n=1 Tax=Clostri... 234 3e-60 UniRef50_Q1IR62 Flagellar motor switch protein FliM n=1 Tax=Cand... 234 4e-60 UniRef50_A1SEN6 Flagellar motor switch protein FliM n=1 Tax=Noca... 233 9e-60 UniRef50_C5EFH3 Flagellar motor switch protein FliM n=3 Tax=Clos... 231 2e-59 UniRef50_B9IWG1 Flagellar motor switch protein FliM n=70 Tax=Bac... 231 2e-59 UniRef50_Q0FMH0 Flagellar motor switch protein fliM n=1 Tax=Rose... 230 5e-59 UniRef50_C8WBT4 Surface presentation of antigens (SPOA) protein ... 230 6e-59 UniRef50_C1A553 Flagellar motor switch protein FliM n=1 Tax=Gemm... 229 8e-59 UniRef50_Q3A5D9 Flagellar biosynthesis protein, component of mot... 228 2e-58 UniRef50_B4U6V4 Flagellar motor switch protein FliM n=1 Tax=Hydr... 227 4e-58 UniRef50_B2V6S5 Flagellar motor switch protein FliM n=2 Tax=Sulf... 227 6e-58 UniRef50_Q0EZ62 Flagellar motor switch protein FliM n=1 Tax=Mari... 226 7e-58 UniRef50_A8UVU1 Flagellar motor switch protein FliM n=1 Tax=Hydr... 226 8e-58 UniRef50_D1BCL9 Flagellar motor switch protein n=1 Tax=Sanguibac... 225 1e-57 UniRef50_B2IJZ9 Flagellar motor switch protein FliM n=1 Tax=Beij... 225 2e-57 UniRef50_B6R823 Flagellar motor switch protein FliM n=1 Tax=Pseu... 224 3e-57 UniRef50_C7R0I8 Flagellar motor switch protein FliM n=1 Tax=Jone... 224 3e-57 UniRef50_C6WJP9 Flagellar motor switch protein FliM n=1 Tax=Acti... 224 3e-57 UniRef50_B1M7I2 Flagellar motor switch protein FliM n=4 Tax=Alph... 222 1e-56 UniRef50_A3U1I7 Flagellar motor switch protein FliM n=1 Tax=Ocea... 222 1e-56 UniRef50_A6W8L0 Flagellar motor switch protein FliM n=1 Tax=Kine... 218 2e-55 UniRef50_A9DR47 Flagellar motor switch protein n=1 Tax=Oceanibul... 218 3e-55 UniRef50_B8HEJ5 Surface presentation of antigens (SPOA) protein ... 215 2e-54 UniRef50_Q2CGI2 Possible flagellar motor switch protein FliM n=1... 215 2e-54 UniRef50_Q21AD3 Flagellar motor switch protein FliM n=3 Tax=Brad... 213 6e-54 UniRef50_C1F3H9 Putative flagellar motor switch protein FliM n=1... 213 9e-54 UniRef50_B8EL07 Surface presentation of antigens (SPOA) protein ... 207 4e-52 UniRef50_B8DI83 Flagellar motor switch protein n=18 Tax=Listeria... 206 1e-51 UniRef50_B4UFI3 Flagellar motor switch protein FliM n=3 Tax=Anae... 206 1e-51 UniRef50_Q6AJS9 Related to flagellar motor switch protein (FliM)... 205 1e-51 UniRef50_Q1NGL0 Flagellar switch protein n=1 Tax=Sphingomonas sp... 200 8e-50 UniRef50_Q8D3E8 FliM protein n=1 Tax=Wigglesworthia glossinidia ... 199 9e-50 UniRef50_D0I456 Flagellar motor switch protein FliM n=2 Tax=Vibr... 198 2e-49 UniRef50_A3T063 Flagellar motor switch protein n=2 Tax=Sulfitoba... 196 9e-49 UniRef50_A4A5Y9 Flagellar motor switch protein FliM n=2 Tax=uncl... 192 2e-47 UniRef50_C2KTP4 Flagellar motor switch protein FliM n=3 Tax=Mobi... 188 2e-46 UniRef50_UPI0001910677 flagellar motor switch protein FliM n=2 T... 187 4e-46 UniRef50_A0Y177 Flagellar motor switch protein M n=1 Tax=Alterom... 186 8e-46 UniRef50_Q1GNY8 Surface presentation of antigens (SPOA) protein ... 180 9e-44 UniRef50_P57182 Flagellar motor switch protein fliM n=4 Tax=Buch... 174 4e-42 UniRef50_D2LCZ9 Flagellar motor switch protein FliM n=1 Tax=Rhod... 173 8e-42 UniRef50_C6QEZ9 Surface presentation of antigens (SPOA) protein ... 171 4e-41 UniRef50_C7M221 Surface presentation of antigens (SPOA) protein ... 163 9e-39 UniRef50_Q8GKQ6 FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP... 157 6e-37 UniRef50_Q89AZ4 Flagellar motor switch protein fliM n=1 Tax=Buch... 156 1e-36 UniRef50_Q8KA39 Flagellar motor switch protein fliM n=1 Tax=Buch... 153 8e-36 UniRef50_B2TXI0 Flagellar motor switch protein FliM n=4 Tax=Ente... 152 1e-35 UniRef50_Q12PK7 Surface presentation of antigens (SPOA) protein ... 147 6e-34 UniRef50_A6BA62 Flagellar motor switch protein FliM n=1 Tax=Vibr... 140 7e-32 UniRef50_Q0G106 Putative uncharacterized protein n=1 Tax=Fulvima... 123 1e-26 UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=... 118 2e-25 UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmi... 112 1e-23 UniRef50_Q44457 Flagellar motor switch protein fliM n=11 Tax=Rhi... 108 3e-22 UniRef50_B9T9Y1 Putative uncharacterized protein n=1 Tax=Ricinus... 93 1e-17 UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion... 93 2e-17 UniRef50_UPI000169865A flagellar motor switch protein FliM n=1 T... 79 3e-13 Sequences not found previously or not previously below threshold: UniRef50_UPI0001C312B7 surface presentation of antigens (SPOA) p... 169 1e-40 UniRef50_Q18D13 Putative flagellar motor switch protein n=5 Tax=... 143 8e-33 UniRef50_A1UTV5 Flagellar motor switch protein FliM n=1 Tax=Bart... 141 4e-32 UniRef50_A0Z384 Flagellar motor switch protein n=1 Tax=marine ga... 132 1e-29 UniRef50_A6X6R4 Surface presentation of antigens (SPOA) protein ... 130 7e-29 UniRef50_Q1YLL0 Possible flagellar motor switch protein fliM n=1... 124 4e-27 UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion... 123 6e-27 UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=... 121 3e-26 UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotro... 119 1e-25 UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Therm... 117 6e-25 UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desul... 116 1e-24 UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion... 115 2e-24 UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydo... 114 4e-24 UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ... 114 5e-24 UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridiu... 113 8e-24 UniRef50_Q98HE6 Flagellar motor switch protein; FliM n=2 Tax=Mes... 113 8e-24 UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobaci... 109 2e-22 UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion... 107 5e-22 UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Therm... 107 5e-22 UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halot... 107 7e-22 UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion... 105 2e-21 UniRef50_C6XFK7 Flagellar C-ring protein n=1 Tax=Candidatus Libe... 103 7e-21 UniRef50_O54246 Flagellar motor switch protein fliM n=3 Tax=Rhiz... 103 1e-20 UniRef50_Q11LL7 Surface presentation of antigens (SPOA) protein ... 102 2e-20 UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Baci... 101 4e-20 UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion... 101 5e-20 UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brev... 100 7e-20 UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Ther... 100 9e-20 UniRef50_A4J3G9 CheC, inhibitor of MCP methylation n=2 Tax=Desul... 99 2e-19 UniRef50_A9CYK4 Flagellar motor switch transmembrane protein n=1... 98 4e-19 UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax... 98 6e-19 UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion... 96 2e-18 UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clos... 95 5e-18 UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion... 94 6e-18 UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicute... 91 6e-17 UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clost... 90 2e-16 UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moore... 88 3e-16 UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion... 88 5e-16 UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion... 88 6e-16 UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion... 86 1e-15 UniRef50_O67283 Putative uncharacterized protein n=1 Tax=Aquifex... 86 2e-15 UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema... 85 3e-15 UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion... 85 5e-15 UniRef50_Q87FY0 Lateral flagellar FliM-like motor switch protein... 84 9e-15 UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria ... 84 9e-15 UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridi... 83 9e-15 UniRef50_B1I5G4 CheC, inhibitor of MCP methylation n=1 Tax=Candi... 83 1e-14 UniRef50_A4SI06 Lateral flagellar motor switch protein, LfiM n=2... 83 2e-14 UniRef50_B6WWJ4 Putative uncharacterized protein n=1 Tax=Desulfo... 82 3e-14 UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clos... 80 2e-13 UniRef50_UPI00016C4202 hypothetical protein GobsU_09169 n=1 Tax=... 79 2e-13 UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion... 77 7e-13 UniRef50_Q0C4V9 SPOA domain protein n=1 Tax=Hyphomonas neptunium... 77 8e-13 UniRef50_A3WGR7 Putative uncharacterized protein n=1 Tax=Erythro... 74 6e-12 UniRef50_B9KJS2 Surface presentation of antigens (SPOA) protein ... 74 9e-12 UniRef50_Q1ZWR7 Putative flagellar motor switch protein n=2 Tax=... 73 2e-11 UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lact... 72 3e-11 UniRef50_B9Z4S5 Surface presentation of antigens (SPOA) protein ... 71 5e-11 UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Ther... 71 6e-11 UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campyloba... 70 9e-11 UniRef50_A8GYM9 Putative uncharacterized protein n=3 Tax=Shewane... 70 1e-10 UniRef50_B8CVM7 Putative uncharacterized protein n=1 Tax=Shewane... 70 1e-10 UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibac... 70 1e-10 UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria... 70 2e-10 UniRef50_Q7NTQ3 Putative uncharacterized protein n=1 Tax=Chromob... 69 2e-10 UniRef50_Q165H9 Putative uncharacterized protein n=2 Tax=Roseoba... 69 3e-10 UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=... 69 3e-10 UniRef50_A7H8B4 Type III secretion system apparatus protein YscQ... 67 7e-10 UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulf... 67 8e-10 UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Heli... 66 1e-09 UniRef50_A3VIM0 Possible flagellar switch protein FliM n=1 Tax=R... 66 1e-09 UniRef50_A6F9R6 Putative uncharacterized protein n=1 Tax=Moritel... 66 1e-09 UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding... 66 2e-09 UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Hel... 66 2e-09 UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspi... 66 2e-09 UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kine... 66 2e-09 UniRef50_Q28NV3 Putative uncharacterized protein n=1 Tax=Jannasc... 66 2e-09 UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas... 65 4e-09 UniRef50_Q1D0N5 Type III secretion system apparatus protein YscQ... 63 2e-08 UniRef50_A9FKL0 Surface presentation of antigens (SPOA) protein ... 62 2e-08 UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobac... 62 3e-08 UniRef50_A1RF66 Putative uncharacterized protein n=3 Tax=Shewane... 61 4e-08 UniRef50_A6D5X8 Flagellar basal-body rod protein B n=1 Tax=Vibri... 61 4e-08 UniRef50_A6Q2L3 Flagellar motor switch protein FliN n=1 Tax=Nitr... 61 6e-08 UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pp... 61 8e-08 UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Ta... 60 8e-08 UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Delt... 60 8e-08 UniRef50_Q2CBY5 Possible flagellar switch protein FliM n=1 Tax=O... 60 1e-07 UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Acti... 60 1e-07 UniRef50_A8LJC9 Putative uncharacterized protein n=1 Tax=Dinoros... 60 1e-07 UniRef50_A6D2B3 Putative flagellar motor switch protein n=1 Tax=... 60 1e-07 UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pp... 60 1e-07 UniRef50_C4Z8X6 Flagellar motor switch protein n=1 Tax=Eubacteri... 60 1e-07 UniRef50_A6CER1 Flagellar motor switch protein fliN n=1 Tax=Plan... 60 1e-07 UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 T... 60 2e-07 UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivir... 60 2e-07 UniRef50_B5KD54 Surface presentation of antigens protein n=2 Tax... 59 2e-07 UniRef50_D0YPX2 Flagellar motor switch protein FliN n=2 Tax=Mobi... 59 2e-07 UniRef50_B8HEJ4 Flagellar motor switch protein FliN n=1 Tax=Arth... 59 2e-07 UniRef50_Q30RD7 Surface presentation of antigens (SPOA) protein ... 59 2e-07 UniRef50_A0LT68 Flagellar motor switch protein FliN n=1 Tax=Acid... 59 2e-07 UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein ... 59 2e-07 UniRef50_B7RGB2 Surface presentation of antigens protein n=1 Tax... 59 2e-07 UniRef50_A5P6I7 Putative uncharacterized protein n=1 Tax=Erythro... 59 2e-07 UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Spha... 59 3e-07 UniRef50_C2BUL2 Flagellar motor switch protein FliN n=1 Tax=Mobi... 59 3e-07 UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Deth... 59 3e-07 UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Pro... 59 3e-07 UniRef50_C1ZEF0 Flagellar motor switch protein FliN n=1 Tax=Plan... 58 3e-07 UniRef50_A4Y0Q1 Surface presentation of antigens (SPOA) protein ... 58 3e-07 UniRef50_Q2RKD7 Flagellar motor switch FliN n=1 Tax=Moorella the... 58 4e-07 UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundi... 58 5e-07 UniRef50_A4ENM8 Possible flagellar switch protein FliM n=2 Tax=R... 58 5e-07 UniRef50_Q67MU5 Putative uncharacterized protein n=1 Tax=Symbiob... 58 5e-07 UniRef50_Q3ADD4 Flagellar motor switch protein FliN n=1 Tax=Carb... 58 5e-07 UniRef50_C9R9Y4 Surface presentation of antigens (SPOA) protein ... 58 5e-07 UniRef50_Q12HY9 Putative uncharacterized protein n=1 Tax=Shewane... 58 6e-07 UniRef50_Q0C2D2 Flagellar motor switch protein FliN n=1 Tax=Hyph... 58 6e-07 UniRef50_B1K3A5 Surface presentation of antigens (SPOA) protein ... 58 7e-07 >UniRef50_P06974 Flagellar motor switch protein fliM n=208 Tax=Proteobacteria RepID=FLIM_ECOLI Length = 334 Score = 433 bits (1113), Expect = e-120, Method: Composition-based stats. Identities = 334/334 (100%), Positives = 334/334 (100%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER Sbjct: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP Sbjct: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV Sbjct: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR Sbjct: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP Sbjct: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK Sbjct: 301 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 >UniRef50_D2T5W7 Flagellar motor switch protein FliM n=2 Tax=Erwinia pyrifoliae RepID=D2T5W7_ERWPY Length = 334 Score = 360 bits (925), Expect = 3e-98, Method: Composition-based stats. Identities = 215/332 (64%), Positives = 263/332 (79%), Gaps = 1/332 (0%) Query: 1 MGDSILSQAEIDALLNGDS-EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D+ LSQAEID LLN D + + S S + +PYDP+TQRRV+RERL +LEIINE Sbjct: 3 MSDNFLSQAEIDHLLNADGGDDRQVEEQSGSVTREAQPYDPHTQRRVIRERLHSLEIINE 62 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 RFAR FRMGLFNLLRRSPDIT G I+IQPYHEFARNLPVPTNLNL+HL PLRGT L+ FS Sbjct: 63 RFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFS 122 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P +VF+AVDNLFGGDGRFPTK +GREFT TEQRVI+RML +A E Y AW I ++ EY Sbjct: 123 PGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEY 182 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +RSE+QVKFTNIT+SPND+VV TPF +EIG+ GEFNIC+PFS IEPLRELL NPP+ENS Sbjct: 183 IRSEIQVKFTNITSSPNDVVVTTPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENS 242 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGV 299 ED WR LV Q++ ++LELVA F D+ RL+ ++K GDV+P++KP+ I A V GV Sbjct: 243 GQEDTQWRGLLVSQMRETELELVATFPDVPTRLTNVMKFKKGDVIPLDKPELIAASVGGV 302 Query: 300 PVLTSQYGTLNGQYALRIEHLINPILNSLNEE 331 PV T++YG++N Q+AL++E +I L+SLN+E Sbjct: 303 PVFTAKYGSVNNQFALKVEQMIPSALHSLNKE 334 >UniRef50_Q0K3R1 Flagellar motor switch protein n=57 Tax=Proteobacteria RepID=Q0K3R1_RALEH Length = 339 Score = 356 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 179/336 (53%), Positives = 242/336 (72%), Gaps = 7/336 (2%) Query: 1 MG-DSILSQAEIDALLNGDSEVKDEPTASVS--GESDIRPYDPNTQRRVVRERLQALEII 57 M D LSQ E+D LL G S D P AS E +RPY+ TQ R++R RL LEII Sbjct: 1 MAYDKFLSQDEVDELLKGVSGEADTPKASEPALDEGGVRPYNLATQERIIRGRLHTLEII 60 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 NERFAR R LFN +RR DITVG+IRI+ + +FARNLP+PTNLNL+HLKPLRGT L V Sbjct: 61 NERFARSMRTALFNFIRRGADITVGSIRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFV 120 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 + P+LVF+ VDNLFGGDGRF T+VEGR+FT TEQR+I RML+L L Y +AW+ ++P+E Sbjct: 121 YDPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVHPIET 180 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 EY+RSEM KF N+ T N+ VV T FH+E+G + G+ ++CLP++MIEPL++LL+NP L+ Sbjct: 181 EYIRSEMHPKFANVATH-NEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNP-LQ 238 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVD 297 + + D+ W L Q++ +++ELVA FA + ++++L + GDVLPIE P+++ VD Sbjct: 239 DEKEVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEKVFGKVD 298 Query: 298 GVPVLTSQYGTLNGQYALRIEHLIN--PILNSLNEE 331 GVPV+ +GT+NGQYALR+E +IN + L+ E Sbjct: 299 GVPVMQCGFGTMNGQYALRVERMINHQDGDSHLDTE 334 >UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A358_NATTJ Length = 333 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 11/337 (3%) Query: 1 MGDSILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M + +LSQ+EID LL+ S ++ E + ++PYD + +++++ L++IN Sbjct: 1 MSE-VLSQSEIDDLLSAISTGDLNVEDAKQQDTQQKVKPYDFRRPAKFSKDQIRTLQMIN 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E FAR L LR +I + ++ Y EF R+L PT + + P+ G L+ Sbjct: 60 ENFARLLSTYLSAYLRSYVEIELASVDQVTYDEFMRSLTNPTIMGIFSAPPMEGKSLMEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P++ F +D L GG G T E T E+ V ++ L+ +AWK + LE E Sbjct: 120 NPNIAFAVIDRLMGGPGE--TFESTGELTEIEEAVARKIFNRMLDSMLEAWKNVGELEPE 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL-- 236 + R E +FT I SPN+IV F V++G G FN+CLP+ +EP+ + L Sbjct: 178 FERIENNPQFTQI-ISPNEIVAVVAFSVKVGEAEGLFNVCLPYIFLEPVIDRLSARFWFA 236 Query: 237 -ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRII 293 + + + L ++ +Q+ + A A + + + L L GDV+ + KP I Sbjct: 237 TGHQKKITEEESQALKNRLHKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEID 296 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 V + G++ + A++I ++ +SL E Sbjct: 297 LIVGKKTKFKGKPGSIKNKLAVQITQIVREGDDSLGE 333 >UniRef50_A3EQZ9 Flagellar motor switch protein FliM n=2 Tax=Leptospirillum sp. Group II RepID=A3EQZ9_9BACT Length = 338 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 107/335 (31%), Positives = 187/335 (55%), Gaps = 4/335 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESD-IRPYDPNTQRRVVRERLQALEIINE 59 M +SILSQ E++ALL G SE + E A + + ++ Y+ +Q RV+R R+ LEIINE Sbjct: 1 MSESILSQEEVNALLRGLSEGEIETQAKAADSGEPVKQYNLASQERVIRGRMPTLEIINE 60 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 RFAR F++ L LR++ + + I + + +F + +P+P+N+N++ L+ LR L++ Sbjct: 61 RFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLIID 120 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 +V++ VD++FGG GR K+EGR+F+ E R+ ++ LA+ + AW ++P+ + Y Sbjct: 121 ARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPVHPMPITY 180 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +RSE+ +F I +P ++VV + +EI IC+P+S IEP++E L + Sbjct: 181 IRSEINPQFAAIV-APTEMVVTMAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSDQ 239 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 D W + L +V+ + LE+ A + L IL GDV +++ + + V+ Sbjct: 240 YEVDSRWINRLQERVEEAPLEIEAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVE 299 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQ 332 G+ ++ G A+RIE + P E++ Sbjct: 300 GIVRFLARPGIFRHHRAIRIERRVPPPTRYEEEDE 334 >UniRef50_B5YIZ4 Flagellar motor switch protein FliM n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIZ4_THEYD Length = 322 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 192/319 (60%), Gaps = 4/319 (1%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D ILSQ EIDALL G S + E T + S +RPYD +Q ++VR ++ +L+IINER A Sbjct: 4 DEILSQDEIDALLKGISGGEVE-TETAEAPSGVRPYDFTSQEKIVRGKMPSLDIINERLA 62 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R FR+ L + +R+ D+ + I +++F R++P P++LN+I L+PLRG LVVF + Sbjct: 63 RSFRVSLASDIRKIVDVINVNVNITKFYDFLRSVPFPSSLNIIKLEPLRGFSLVVFDAPM 122 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 +F ++ FGG G+ K EGREFT EQR+I++++ + LE +AWK I ++ ++R+ Sbjct: 123 IFTLIEFYFGGSGKGYYKPEGREFTPIEQRIIHKVVMMFLESMEEAWKPIFQIKPHFIRT 182 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242 EM +F I T P D+V+ T F +EI + +C+P+S +EP++E L + L + Sbjct: 183 EMNPQFVTIVT-PVDVVIETEFTLEIETRECKIMVCIPYSSVEPIKEKLYSAFLADRDEM 241 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVP 300 D W L Q++++ +++ A +++ +L L GD++ +++ + + V+GVP Sbjct: 242 DMKWIGRLKAQIKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVP 301 Query: 301 VLTSQYGTLNGQYALRIEH 319 + GT G YA++I Sbjct: 302 KFKGKLGTFKGNYAIKIIK 320 >UniRef50_C6HWH3 Flagellar motor switch protein FliM n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWH3_9BACT Length = 341 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 106/335 (31%), Positives = 184/335 (54%), Gaps = 6/335 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDE---PTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 M ++ILSQ E++ALL G E E P + R Y+ +Q RV+R R+ LEI+ Sbjct: 1 MAENILSQDEVNALLRGIVEGDVETSKPEVTEEAGKKTREYNLASQERVIRGRMPTLEIV 60 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 NERFAR F++ L + LR++ + + + + + EF + +P+P+N+N++ L+P++ L++ Sbjct: 61 NERFARFFQITLSSTLRKAVEFSPVSTEMIKFGEFIKKIPLPSNINILRLEPMKRNFLLI 120 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 +V++ VD+LFGG GR KVEGR+F+ E R+ +L A+ + AW ++ + V Sbjct: 121 IDARMVYLLVDHLFGGVGRGHVKVEGRDFSPIENRITRNILNQAIGDFEKAWAPVHHIGV 180 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 Y+RSE+ +F+ I SP ++V+ + ++I IC+P+S IEP++E L Sbjct: 181 SYIRSEINPQFSAIV-SPTEMVIALTYRLDIDGQGRPVYICIPYSTIEPIKEKLYTGFQS 239 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 + D W L +Q+ +++VA RLS++L PGD++ +++ D I Sbjct: 240 DQYEVDHRWILRLRQQIDSVPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKIT 299 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 V+ ++ G A+RIE + P L + Sbjct: 300 VEKALRFKARPGVYRSSRAVRIEERVFPDLTDVKR 334 >UniRef50_Q2LT03 Flagellar motor switch protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT03_SYNAS Length = 333 Score = 331 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 172/326 (52%), Gaps = 5/326 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSG-ESDIRPYDPNTQRRVVRERLQALEIINE 59 M IL+Q E+DALL G + + + SDI YD +Q R++R R+ LE+ NE Sbjct: 1 MS-QILTQEEVDALLRGITGGQIDTEIDEEEEPSDIVIYDLASQDRIIRGRMPTLEMTNE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 +FAR FR L ++LR+ + ++ + + EF + LPVPT+L++ ++PLRG + V Sbjct: 60 KFARMFRTTLSSMLRKVVAVNSMSVDMIKFGEFLKTLPVPTSLHIFRMEPLRGNAIFVME 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 ++F VD LFGG G+ KVEGREFT E +I +++ AL AWK ++ + V Y Sbjct: 120 SKVIFTLVDVLFGGAGKELFKVEGREFTAIETNLIKKVILSALSDLEKAWKTMHDIRVIY 179 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 RSE+ +F I P D+V F +E+ +TG +C+P+S +EP+RE L Sbjct: 180 QRSEINPQFAQIV-PPTDLVFVVDFEIEVEYITGILKLCIPYSTVEPIREKLQAGFQSEQ 238 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 D+ W + + L+++ + ++ L PGDV+ +++ D + V+ Sbjct: 239 LEVDKVWMKRFRDNLMLAHLDILIELGSTLISAKDVVNLKPGDVITLDQYCTDPVNIFVE 298 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINP 323 G+ GT G A+RI ++ Sbjct: 299 GMMKFKGYPGTYKGNQAVRISEIVQD 324 >UniRef50_B0THB4 Flagellar motor switch protein flim n=5 Tax=Clostridiales RepID=B0THB4_HELMI Length = 331 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 159/335 (47%), Gaps = 9/335 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTA-SVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D ILSQAEIDALL + + P S IR YD + ++++ L++I E Sbjct: 1 MSD-ILSQAEIDALLAALASGQVTPEDVKDDLTSKIRVYDFKRPNKFSKDQIHTLQVIYE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 + R L LR I+V ++ Y EF R++P PT +N+ + PL G G++ Sbjct: 60 NYCRSLTTYLAANLRTLVQISVQSLDQLTYEEFIRSIPNPTIVNIFTMSPLNGNGIMEIH 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P++ F +D LFGG G P K+ R T EQ V R + L+ +++AW I ++ Sbjct: 120 PNIAFAVIDRLFGGTGNPPDKI--RGLTEIEQSVFQRTTRRMLDSFTEAWDNIAQVKARL 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E +F I +P ++VV +IG++ G NICLP+ ++EP+ L ++ Sbjct: 178 EMIETNPQFIQIV-APTEMVVVITLACKIGDVEGMINICLPYILLEPIISKLSAHFWFSN 236 Query: 240 RNEDQNWR--DNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAH 295 +++ + L +++ + + + +L +S++L L GDV+ ++ + Sbjct: 237 AAKERTTEQLEALRNRLERALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELEVL 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 + ++ G + ++I + + +E Sbjct: 297 IGQRVKYLARPGLSGSKLGIQITATYEKGVETDDE 331 >UniRef50_C1TKI5 Flagellar motor switch protein FliM n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKI5_9BACT Length = 334 Score = 326 bits (835), Expect = 9e-88, Method: Composition-based stats. Identities = 89/330 (26%), Positives = 163/330 (49%), Gaps = 9/330 (2%) Query: 1 MGDSILSQAEIDALLN--GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M +LSQ+EID+LL+ EV E + S E +++ YD + +++L+A+++I+ Sbjct: 1 MTPDVLSQSEIDSLLDVLTSGEVDFEEISQASAEKNVKGYDFRRPDKFSKDQLRAIQMIH 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E F+R L ++R V ++ Y EF R++ PT + ++ + PL G +V Sbjct: 61 ESFSRQLTTSLSTMVRSIVTCEVASVDQVAYEEFVRSMVQPTVMGVLEMYPLEGNAVVEM 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P+LVF +D L GG G K R+ T E VI R+ LE D+W + + Sbjct: 121 NPNLVFAIIDRLLGGKGEVFGK--PRDLTDIESTVIERVFMRMLELLEDSWSTVIDVRFR 178 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 + E F I D+V+ V IG++ G ++C+P+ ++EP+ + L + Sbjct: 179 FDSMESNPFFVQICPG-TDMVLLVTLRVSIGDVEGMVSLCIPYFVMEPVMDKLSSQIWFA 237 Query: 239 S--RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIA 294 S +N+DQ+ R L + ++ + D L L +++L GDV+ ++ D + Sbjct: 238 STGKNKDQDHRGFLTASLGTVKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRV 297 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 V T + GT++G+Y++ + + + Sbjct: 298 RVGSRIKFTGRPGTVDGRYSVEVLEVADDG 327 >UniRef50_Q6MI46 Flagellar motor switch protein FliM n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI46_BDEBA Length = 333 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 98/332 (29%), Positives = 172/332 (51%), Gaps = 13/332 (3%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVS---------GESDIRPYDPNTQRRVVRERLQA 53 + +LSQ+E+DALL S+ + E I YD +Q R++R RL Sbjct: 2 NQVLSQSEVDALLAAVSDGDVGSPEASKPETQNVGKVDERKIVSYDLTSQDRIIRGRLPQ 61 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 LE+I E+F R FR+ L + LR+ IT+ + + EF LP+PT ++++ LRG+ Sbjct: 62 LEVIYEKFMRAFRVSLSSALRKIASITLTSTEFLKFGEFINTLPMPTCMSVLRFGNLRGS 121 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 L V L + VD+ FGG R TK++G++FT E ++ +++ LA+ AW +I Sbjct: 122 ALFVIESKLAYALVDSFFGGADRPYTKIDGKDFTPIELSIVQKVVGLAINDMEMAWASIE 181 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN 233 + +VR+E+ +F I P D+V+ + F VE+ N TG +I +P++ IEP+++ L Sbjct: 182 KIGCSFVRTEVNPQFVGIV-PPTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQT 240 Query: 234 PPLENSRNEDQN-WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PD 290 + D+ W + Q+ + +E+ N + ++L ++ L GDV+P+++ Sbjct: 241 GFQVETDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASG 300 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 V+GV YG +G A+++ + Sbjct: 301 EFDVAVEGVRKFKGYYGIHHGTVAVQVTRPVE 332 >UniRef50_C0QAJ4 FliM n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAJ4_DESAH Length = 326 Score = 324 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 116/325 (35%), Positives = 175/325 (53%), Gaps = 6/325 (1%) Query: 1 MGDSILSQAEIDALLNGD--SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D ILSQ E+D+LL G EV+ E +S I YD +Q +VVR R+ ++IN Sbjct: 1 MSD-ILSQDEVDSLLAGLDSGEVESETEVELSDPEGIVTYDFTSQDKVVRARMPTFDVIN 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 ER +R R L LL+ + D+T + + EF R+LPVPT+L++ ++PLRG GLVV Sbjct: 60 ERLSREIRTSLSGLLQTNVDVTANPLDTLKFTEFVRSLPVPTSLHVFRMEPLRGHGLVVL 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 LV+ +D FGG+G +VEGREFT E+ +I +++ L+ AW I P++ Sbjct: 120 ESQLVYNLIDTFFGGEGLGKARVEGREFTAIEEVMIKKVVVACLKDIEKAWLPIEPVKTS 179 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +RSEM +F I P D+V+ T F +E+ G +CLP++MIEPLR L + Sbjct: 180 LIRSEMNPQFAAIVL-PTDLVIVTRFEIELEQAAGNLVLCLPYAMIEPLRAKLASGFQAE 238 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHV 296 + D WR L + S + L + +++ L PGDV+ + + D + +V Sbjct: 239 TEEIDVAWRKRLQEIILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTGYV 298 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLI 321 DG+P + G G A R+E + Sbjct: 299 DGLPKVRGFAGVQRGFQAFRVEKKL 323 >UniRef50_C8WWF8 Flagellar motor switch protein FliM n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWF8_ALIAD Length = 331 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 154/323 (47%), Gaps = 10/323 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGES--DIRPYDPNTQRRVVRERLQALEIIN 58 M + +LSQ+EIDALL + +P A + +R YD R ++ L+ L ++ Sbjct: 1 MSE-VLSQSEIDALLYAIRTGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E F R L LR P I V ++ PY EF R++P T L + + PL G ++ Sbjct: 60 EHFCRLLTSQLSGQLRSVPQIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P +VF +D GGD P +V RE T E + R+ + ++AWK++ L+ + Sbjct: 120 NPQVVFAMLDKYMGGDSAGPYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQ 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +V E +F +TT PN+ V+ V +G TG N+C+P IEP+ L N + Sbjct: 178 FVSLESNPQFLQLTT-PNETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMD 236 Query: 239 S--RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 ++ + D L ++ +++ L + ++L L GD + + + D + Sbjct: 237 PAFQSGRRQVNDELRAKLLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALV 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRI 317 +VDG P G N YA++I Sbjct: 297 YVDGRPAFWGSVGKRNRVYAVKI 319 >UniRef50_B8FTQ9 Flagellar motor switch protein FliM n=3 Tax=Clostridiales RepID=B8FTQ9_DESHD Length = 331 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 165/333 (49%), Gaps = 10/333 (3%) Query: 1 MGDSILSQAEIDALLNGDSE--VKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 MG+ +LSQ EIDALLN S+ V E + + +R YD + ++++ +L+ I Sbjct: 1 MGE-VLSQDEIDALLNALSDGQVDAEEIKTTKVQKKVRVYDFRRPNKFSKDQIHSLQNIY 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E + R L L + V +I Y EF R+LP PT L+L L PL GT L+ Sbjct: 60 ENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYTLNPLEGTLLMEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 SP+L F +D L GG G+ K R+ T E+ +I+ + + +AW + E E Sbjct: 120 SPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIGEAWSEVISNEPE 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 Y+ E +FT I +PN++++ V++G + G N+CLP+ ++EP+ + L L + Sbjct: 178 YIVLETNPQFTQIV-APNEMIILVTLEVQVGEMVGMVNMCLPYLVLEPVLDKLSTLFLFS 236 Query: 239 SRNE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIA 294 ++ + + + + R+++ +++++ + + +L+L PGDV+P+ + + Sbjct: 237 TQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPV 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 +V G A++I ++ + Sbjct: 297 YVGNFRKFKGIPGLHGEHLAVQITEIVEEGRDQ 329 >UniRef50_Q51465 Flagellar motor switch protein fliM n=158 Tax=Proteobacteria RepID=FLIM_PSEAE Length = 323 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 129/319 (40%), Positives = 189/319 (59%), Gaps = 3/319 (0%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 +LSQ EIDALL+G + E + ++ YD +Q R+VR R+ LE+INERFAR Sbjct: 5 DLLSQDEIDALLHGVDDGLVETEVEAT-PGSVKSYDLTSQDRIVRGRMPTLEMINERFAR 63 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLV 123 + R+ +FNLLRRS D+ VG +++ + E+ +L VPT+LNL+ +KPLRGT L + LV Sbjct: 64 YTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLV 123 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 F VDN FGGDGR K+EGREFT TE RV+ +L+ A +AW+A+ + EYV SE Sbjct: 124 FKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMNFEYVNSE 182 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNED 243 + NI + +V + FH+E+ G+ +I +P+SMIEP+RE+L + ++D Sbjct: 183 VNPAMANIVSPSEVVV-VSTFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQD 241 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLT 303 + W L V Q+ L A L+L IL + PGDV+P+E P+ ++ +GVP Sbjct: 242 ERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPEHMVMRANGVPAFK 301 Query: 304 SQYGTLNGQYALRIEHLIN 322 + G G AL+I + Sbjct: 302 VKLGAHKGNLALQILEAVE 320 >UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clostridia RepID=B0K1R9_THEPX Length = 332 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 80/328 (24%), Positives = 154/328 (46%), Gaps = 11/328 (3%) Query: 1 MGDSILSQAEIDALLNGDS----EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEI 56 M + ILSQ+EID LL S +V++ + IR YD + +E+L+ L++ Sbjct: 1 MAE-ILSQSEIDELLKAFSSGGLDVQEIEEVEETKSKKIRNYDFRRPNKFSKEQLRTLQM 59 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 I E +R L LR ++TV ++ Y+EF+ +L P + +I PL G L+ Sbjct: 60 IFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIIDAAPLEGLFLL 119 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 F+ + + +D + GG G+ ++ R++T E ++ +++K L + + W I + Sbjct: 120 EFNNNTTYAILDRILGGMGKG--ELLDRDYTEIEISLLTKIVKQMLSLFKEPWSNILDIN 177 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 +R E +F I SPN+ V ++I G N C+P +EP+ L Sbjct: 178 PSLIRVETNSQFAQI-ISPNETVALCTLSIKINETEGIMNFCMPHLTLEPIVPKLTTKFW 236 Query: 237 ENSRNEDQNWRDNLVR-QVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRII 293 +S +++ L++ ++ + + L A ++ + + L GD++ ++K + + Sbjct: 237 FSSMKKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVD 296 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLI 321 +D G N +Y++RI +I Sbjct: 297 IIIDKKVKFRGIPGIKNNKYSVRITEVI 324 >UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ6_HALOH Length = 334 Score = 319 bits (818), Expect = 9e-86, Method: Composition-based stats. Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 10/328 (3%) Query: 1 MGDSILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D +LSQ+EID+LL+ S +V E + E ++ YD ++ +E+++ LE+I+ Sbjct: 1 MAD-VLSQSEIDSLLSALSSGDVDVEEIKKETEEEKVKVYDFRRPDKLSKEQMRTLEMIH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E FAR L LR D V +I Y EF R+LP PT + + ++P G + Sbjct: 60 ENFARILTTTLSTQLRSRVDFEVASIEQLTYEEFIRSLPEPTIIGISEMEPFNGQFIFEI 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P + F +D LFGG G +V R +T E+ V+ +++ L G +AW+ I ++ Sbjct: 120 NPDIGFAIIDRLFGGMGNPLDRV--RTYTDIEKVVLRKVISWFLSGLPEAWENIIRVKPR 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-VNPPLE 237 E +FT + S ND+ + +I N G N+C+P+ MIEP+ L Sbjct: 178 LREIESNPQFTQVVPS-NDMTILITMSAKIANSEGLVNVCIPYIMIEPIVPQLNAQQWFS 236 Query: 238 NSRNEDQN-WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 N+R E + + ++++ + LE++A L ++ +L L PGDV+ ++K +++ Sbjct: 237 NTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVDI 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + G N A++I +I+ Sbjct: 297 RIGKNVKFQGVAGVSNKHMAVKITDVIS 324 >UniRef50_D2R066 Flagellar motor switch protein FliM n=4 Tax=Planctomycetaceae RepID=D2R066_9PLAN Length = 362 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 92/339 (27%), Positives = 163/339 (48%), Gaps = 20/339 (5%) Query: 1 MGDSILSQAEIDALLNGD--------------SEVKDEPTASVSGESDIRPYDPNTQRRV 46 M D +LSQAE+++LL+ + V ++ + PYD RV Sbjct: 1 MADEVLSQAEVESLLSAMEASGPRTSSAAISTASVAPPSKGAIRTREKVTPYDFKRPERV 60 Query: 47 VRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIH 106 +E+++AL+ ++E F R+F L LLR ++ + ++ Y EF +L PT NL+ Sbjct: 61 GKEQMRALQSLHEGFGRNFGAALSALLRSIVEVKLTSVDQLTYSEFVFSLENPTCFNLLR 120 Query: 107 LKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYS 166 +PL G ++ +PS+++ +D L GG G+ V R T E R+++R+ L L+ Sbjct: 121 AEPLEGNLILDINPSILYPIIDRLLGG-GKEAGPVARRPLTEIELRLVSRITHLFLQELK 179 Query: 167 DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP 226 AW+ + PL++ R E + I PN++VV F + + ++ G N+C+PF+ IE Sbjct: 180 HAWEGVLPLKLSVDRVESNPQLVQIV-PPNEVVVLISFELTLNDVRGMINLCIPFNSIER 238 Query: 227 LRELLV--NPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 + L N + +++ S++ELV A+ ++ ++ L GD++ Sbjct: 239 IGSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKVELVVTLAETTITTGDMIGLRVGDII 298 Query: 285 PIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 +K + V G+ + G L G A+RIE I Sbjct: 299 TTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRIEQSI 337 >UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6B3_THEAS Length = 335 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 152/338 (44%), Gaps = 10/338 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M +LSQ EID+LL S D + I+ YD + +++L+A+++I++ Sbjct: 1 MVPEVLSQNEIDSLLQALSSGSVDLAAIESKDDRKIKVYDFRRPDKFSKDQLRAIQMIHD 60 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 FAR L L+R V ++ Y EF R+L PT + ++ + PL G ++ + Sbjct: 61 SFARQLTTSLSTLVRSMVSSEVVSVDQLAYDEFIRSLVQPTVIGVLEMYPLSGNAVLEMN 120 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P LVF +D + GG G K R+ T E+ V+ R++ LE ++W + + + Sbjct: 121 PHLVFAIIDRMLGGKGEPIRK--PRDLTDIERTVVERVMLKILEHLEESWSTVVDIRFRF 178 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E F I D+V+ V++G G N+C+P+ ++EP+ + L + S Sbjct: 179 ESMESNPFFVQICPG-TDMVLLVTLKVQVGEAEGIMNLCIPYFVMEPMIDKLSSQHWFAS 237 Query: 240 RNED--QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 + R+ + ++ + + L L +L+L GDV+ ++ D + Sbjct: 238 TGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLR 297 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINP--ILNSLNEE 331 V + G+ N YA R+ +++ L E+ Sbjct: 298 VGNRVKFLCEAGSFNKHYAARVLEVLSSEEGLAHQGED 335 >UniRef50_B8FK38 Flagellar motor switch protein FliM n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FK38_DESAA Length = 325 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 5/325 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESD-IRPYDPNTQRRVVRERLQALEIINE 59 MGD ILSQ E+D+LL G S + E D + YD Q RV+R R+ LE++N+ Sbjct: 1 MGD-ILSQDEVDSLLQGISSGEIETEPEEEVSEDGVALYDFANQDRVIRGRMPTLEVVNK 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R AR F L +R + DI+V + + EF ++PVP N+++ ++PLRG L+V Sbjct: 60 RLARMFSSSLSATMRGAADISVRDTNMIKFSEFQSSIPVPANIHMFKMEPLRGHALLVVD 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LVF ++ FGG KVEGR+FT E ++I +++ + L+ + DAW I P++ Y Sbjct: 120 TPLVFQLIEYYFGGTPGGALKVEGRDFTRIENQIIRKVVGIFLKDFDDAWAPIFPIKPVY 179 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 VRSEM +F I P D+++ F VE+ G + +P+SM+EP+R+ L + ++ Sbjct: 180 VRSEMNPQFAVIGL-PIDLMIIVRFQVELETTEGGMTLAIPYSMLEPIRDKLYSGFQSDN 238 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 D +WR + QVQ +E+ + +++ L GDV+ +++ + + A + Sbjct: 239 LEADASWRKRVESQVQEVLVEICVELGTAVITAERLMSLRKGDVISLDQFADEPLTAKIQ 298 Query: 298 GVPVLTSQYGTLNGQYALRIEHLIN 322 GVP + + G + G A+ +E I Sbjct: 299 GVPKIAGKAGVVKGSKAIAVEGRIT 323 >UniRef50_A9KNE7 Flagellar motor switch protein FliM n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KNE7_CLOPH Length = 325 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 159/328 (48%), Gaps = 9/328 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MGD +LSQ+EID LL S + D SGE ++ YD + + +E L+ L+II E Sbjct: 1 MGD-VLSQSEIDNLLAALSSGELDADEFRDSGEKAVKNYDFHRPSKFSKEHLRTLDIIFE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 + R L LR++ + V Y EF L P L +I PL G ++ + Sbjct: 60 HYGRLLSTHLPAYLRKNVQVEVINSEAVVYQEFTNALSNPVLLGIIDFAPLEGNIIIELA 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 ++ + VD + GG G + R+F+ E +I R+ + ++ W + L Sbjct: 120 ENVGYAIVDRMLGGSGN--PLEKSRDFSEIELVIIERIFTVMTNILAEPWANVVKLNPRL 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +R E +F I SP+D+ +++IGN+ G N+CLP++ +E + + L ++ Sbjct: 178 IRIETNSQFAQI-ISPSDMASIVTLNIKIGNIEGMMNVCLPYACLEVIIDKLNTKYWYST 236 Query: 240 RNE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAH 295 E D N+++ + + +++ + A S+ L++++ + GD++ +++ D + + Sbjct: 237 MQEKGDSNYQEFIETAISRARIPVKAVLGKSSISLNELINMQKGDIIKLDRKIDDELSVY 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINP 323 V + T+ G + YA++I +I Sbjct: 297 VGNIKKFTALPGASSDSYAVKISTIIRE 324 >UniRef50_C0GJF2 Flagellar motor switch protein FliM n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF2_9FIRM Length = 325 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 152/322 (47%), Gaps = 7/322 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EID+L++ S + + ++ ++ YD + +++++ L+I++E Sbjct: 1 MKD-VLSQNEIDSLIHALSTGEIAEEEPQTSDTPVQVYDFRRPNKFSKDQMRTLQIVHEN 59 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FAR L LR +T+ ++ + EF +LP PT +++ G+ ++ +P Sbjct: 60 FARILSNFLTAYLRTPVQVTLASVSQVTFEEFIFSLPTPTLMSIFKASDNMGSAMLETNP 119 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 VF +D LFGG+G+ P ++ RE T E V+ R++ LE AW+ IN L + Sbjct: 120 QFVFPIIDLLFGGEGKTPKQI--RELTEIELTVMRRIVNKILENLRYAWEDINELSPQIE 177 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-VNPPLENS 239 + +F + S N+ V +I + G N+C PF +EP+ L NS Sbjct: 178 NMDTNPQFNQMIAS-NETVALLTLSTKIRDSEGLINVCFPFITLEPVIANLTAQHWFSNS 236 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVD 297 + L ++ +EL A ++++ L+ GDV+ +++ + V+ Sbjct: 237 QISGGVHSRMLETGLEDVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVE 296 Query: 298 GVPVLTSQYGTLNGQYALRIEH 319 P+ Q G G+ A++ H Sbjct: 297 EKPMFKIQAGVSKGRRAVQFLH 318 >UniRef50_P23453 Flagellar motor switch protein fliM n=32 Tax=Bacillales RepID=FLIM_BACSU Length = 332 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 159/323 (49%), Gaps = 9/323 (2%) Query: 1 MGDSILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M +LSQ EIDALL+ S E+ E E ++ YD R ++++++L I+ Sbjct: 1 MSGEVLSQNEIDALLSAISTGEMDAEELKKEEKEKKVKVYDFKRALRFSKDQIRSLTRIH 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + FAR LR I+V ++ PY EF R++P T LNL + P+ G ++ Sbjct: 61 DNFARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEV 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P++ + +D + GG G KV+ T E ++I+ + + AL Y +AW++I +E E Sbjct: 121 NPTIAYTMMDRVMGGIGISHNKVD--SLTEIETKIISNLFENALGNYKEAWQSIADIEPE 178 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL-- 236 E+ +F + SPN+ VV + +IG ++G N+C+P ++EPL L Sbjct: 179 MTEFEVNPQFVQMV-SPNETVVVISLNTQIGEISGVINLCIPHIVLEPLIPKLSVHYWMQ 237 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 + +L +++ +Q+ +VA L + + L L GD + ++K D + Sbjct: 238 SDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTV 297 Query: 295 HVDGVPVLTSQYGTLNGQYALRI 317 V P Q G +N + A++I Sbjct: 298 LVGDKPKFLGQAGRVNRKQAVQI 320 >UniRef50_C4Z5H1 Flagellar motor switch protein FliM n=7 Tax=Bacteria RepID=C4Z5H1_EUBE2 Length = 327 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 87/326 (26%), Positives = 153/326 (46%), Gaps = 9/326 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MG+ +LSQ+EID LL S + D + E ++ YD + +E L+ LEII E Sbjct: 1 MGE-VLSQSEIDNLLKALSSGELDVDEMKNTEEKQVKNYDFARPSKFSKEHLRTLEIIFE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F R L LR+S + V + Y EF+ L P L ++ ++PL G ++ + Sbjct: 60 HFGRLLATNLPAYLRKSVSVDVVNSEVVIYSEFSNALSNPVLLGVVGMQPLSGNIIMEMA 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 +L F VD L GG G K R+F+ E ++ R+ + + + W+ + + Sbjct: 120 SNLGFAIVDRLLGGAGNSLDK--ERDFSEIELSILERIFTVCVNLMQEPWENVVKVNPRL 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-VNPPLEN 238 R E +F I SP++ + +++IG++ G NICLPF+ +EP+ + L N Sbjct: 178 ERIETNSQFAQI-ISPSETIAIVTINLKIGDVEGLVNICLPFATLEPVMDKLNTKYWFSN 236 Query: 239 SRNEDQN-WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAH 295 + +D N + D + + + + + A + +S L GD++ I+K + Sbjct: 237 MQEKDTNTYEDAIETVIDKAMIPVKAVLGTSKISVSDFANLQIGDIIRIDKKVDQELEVF 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLI 321 V + + G +YA+R+ +I Sbjct: 297 VGNIKKFKALPGYYEDKYAVRVTEVI 322 >UniRef50_Q1NVK6 Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM n=2 Tax=Deltaproteobacteria RepID=Q1NVK6_9DELT Length = 330 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 105/328 (32%), Positives = 176/328 (53%), Gaps = 6/328 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGES-DIRPYDPNTQRRVVRERLQALEIIN 58 M + ILSQ E+DALL G S DEP +V ES PYD Q+R+V+ ++ A++ I+ Sbjct: 1 MAEQILSQDEVDALLKGISGGDIDEPEEAVDAESLGYTPYDFTRQQRIVQVKMPAMDAIS 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + F R R L LRR DIT + ++ + F R LPVP++L + + P RG L+V Sbjct: 61 DTFMRSVRTSLSAALRRILDITAAPMEMERFGAFVRTLPVPSSLQVFKMAPFRGHALIVL 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 P LVF V++ GG G +VEGR+FT EQR+I R++ L L AW ++ PL+V+ Sbjct: 121 EPKLVFTLVESFLGGSGARNVRVEGRDFTAIEQRLIRRVVNLLLTDLEKAWYSLQPLKVQ 180 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 YVRSE+ +F I P D+VV + V++ G C+P + +E ++ L+ Sbjct: 181 YVRSEINPQFAKIC-QPEDVVVINRYDVDMDRAAGSITTCIPLANLESVKSKLMTTFQRE 239 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 ED + +V ++++++++ + + I+ L GD + +E+ +++ +V Sbjct: 240 QSEEDIAIQRTIVDNIKNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYV 299 Query: 297 DGVPVLTSQYGTLNGQYALRIE-HLINP 323 G+ + G A+ I+ +++P Sbjct: 300 AGMRKYMATPGVHRNNNAVLIKRKVLDP 327 >UniRef50_A8F895 Flagellar motor switch protein FliM n=10 Tax=Thermotogaceae RepID=A8F895_THELT Length = 330 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 144/328 (43%), Gaps = 10/328 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D +LSQ EID LL S + ++ YD + +E ++ ++I+E Sbjct: 1 MSD-VLSQDEIDKLLQAISSGEVTVDEIKKEETKKVKLYDFRRPSKFSKEHIRVFDMIHE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 FAR L +R +I + +I Y EF R+LP P+ + + G+ ++ + Sbjct: 60 NFARSISTYLSGRVRTFTNINLASIDQISYEEFIRSLPAPSFITVFSAPEFVGSAILEMN 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 + + +D + GG G K R + E ++ + + L S AW + Sbjct: 120 LEIFYTILDLILGGPGIPNVK---RTPSDIELSIMRKEVMNILTNLSQAWSEVYQFVPTI 176 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E +F I PN++++ +V I G NIC P S+ EP + L + + Sbjct: 177 ESVENNPQFVQIA-PPNEMILLVSLYVTIAKTEGFLNICWPSSLTEPFMDKLSSRTWFTA 235 Query: 240 RNE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAH 295 + E + ++L + V+ ++++ A + L + +IL L GDV+ + K D ++ Sbjct: 236 KREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVKEILDLEVGDVIRLQTHKDDDVMVE 295 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINP 323 V P ++ G G A+++ ++ P Sbjct: 296 VQSKPKFMARPGVFKGHRAVKVTRILKP 323 >UniRef50_Q31FP9 Flagellar motor switch protein FliM n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FP9_THICR Length = 339 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 176/320 (55%), Gaps = 2/320 (0%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGES-DIRPYDPNTQRRVVRERLQALEIINERF 61 D ILSQ E+DALL G + E + YD Q R+VR RL AL+IINERF Sbjct: 2 DDILSQDEVDALLKGMGGGDVDTEGDNPAEGTSAKVYDFTNQERIVRGRLPALDIINERF 61 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR F+ ++ S ++T G ++I ++ RNL VPT+LN+ + PL G L Sbjct: 62 ARGFQRHFNEMIMSSVEVTAGEVKIIKMIDYLRNLFVPTSLNIYRINPLNGVSLFTLDSK 121 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L+F AVD FGG G P K+EGRE+T E ++ +L ++ + AW + +E++Y+ Sbjct: 122 LIFTAVDMYFGGTGLLPFKIEGREYTPVEMSMVRSILDMSSDNLRKAWAPVMDIEIDYMH 181 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 SEM KF +I + D++V +P +V + G +I +P++M+EP+R+ L Sbjct: 182 SEMNPKFASIVDA-TDMIVVSPINVRFEGVEGRVDIVMPYAMLEPVRDKLEEGMSNLQGE 240 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPV 301 D W L + ++ ++EL N ++ + + ++K+ GD++PIE P+ + +G+ V Sbjct: 241 SDNRWSRTLKEETKNIEIELAVNLLELQMSMDDLMKMEKGDIIPIEMPELVTVKAEGIGV 300 Query: 302 LTSQYGTLNGQYALRIEHLI 321 L + G + A++IE ++ Sbjct: 301 LKGKVGESRDRKAVKIEQIL 320 >UniRef50_C6BTE8 Flagellar motor switch protein FliM n=13 Tax=Desulfovibrionales RepID=C6BTE8_DESAD Length = 326 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 169/326 (51%), Gaps = 6/326 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTAS-VSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M IL Q E+DALL G S + E +S + +D Q R++R R+ LEI+N+ Sbjct: 1 MS-KILQQDEVDALLRGLSGGEVEAEQDIPDDDSGVVSFDLANQDRIIRGRMPVLEIVND 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 RFAR L N +R+ DI +I + + +F R+LPVPT+L++ + PLRG ++V Sbjct: 60 RFARLATNNLANTMRKRVDINPISIDMSKFGDFMRSLPVPTSLSIFKMDPLRGNAILVVD 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LVF V++ FGG G P KVEGR+FT EQ +++R++K+AL D+W+ ++ + +E Sbjct: 120 SRLVFALVESFFGGSGSQP-KVEGRDFTPIEQAIVDRVVKIALSNLEDSWRPVHEVHLEL 178 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 VRSE+ +F I P+D+VV F VE+ N G +CLP+S +EP+R L Sbjct: 179 VRSEVNPQFAAIV-PPSDVVVVITFEVELENAIGSLIVCLPYSTLEPIRSKLHASFQSER 237 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQ--ILKLNPGDVLPIEKPDRIIAHVD 297 D W ++ + ++L+ + Q L+ +L ++ D + V Sbjct: 238 LEIDHVWVSRFKERLLETPVDLLVRLGKTKITGRQLLNLEEGDLLLLDTDEEDMLECEVG 297 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINP 323 GV G + A +I I P Sbjct: 298 GVLKYLGSPGRVKANRAFQIAQAIEP 323 >UniRef50_Q57511 Flagellar motor switch protein fliM n=33 Tax=Spirochaetales RepID=FLIM_BORBU Length = 352 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 86/336 (25%), Positives = 156/336 (46%), Gaps = 16/336 (4%) Query: 6 LSQAEIDALLNGDSEVKDEP---------TASVSGESDIRPYDPNTQRRVVRERLQALEI 56 LSQ +ID+LL + + ++ + ++ YD + +E+++ + Sbjct: 8 LSQDDIDSLLESINSSESLSLDESLSNVISSPTGKKQKVKVYDFKRPDKFSKEQVRTVSS 67 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 +E FAR+ L LLR+ + V ++ Y EF R++P PT L +I++ PL+G+ + Sbjct: 68 FHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLKGSAIF 127 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 P++ F VD LFGGDG K + R+ T EQ V+ ++ L +AW + L Sbjct: 128 EVDPTIAFAIVDRLFGGDGD-TIKDKSRDLTEIEQSVMESVIIRILANMREAWSQVVDLR 186 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + E+ +F I P ++++ V+IG + G N CLP+ IEP+ L Sbjct: 187 PRFGHIEVNPQFAQIV-PPTEMIILVTLEVKIGKVEGLMNFCLPYITIEPIVSKLSTRYW 245 Query: 237 EN--SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD---R 291 + D L +++++ + LVA ++ L++ +IL L+ GDVL +E Sbjct: 246 HSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDVLNLESSLINKD 305 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 + V + G + + +++I I I Sbjct: 306 LTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGF 341 >UniRef50_Q3ADB8 Flagellar motor switch protein FliM n=6 Tax=Clostridia RepID=Q3ADB8_CARHZ Length = 335 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 89/326 (27%), Positives = 149/326 (45%), Gaps = 8/326 (2%) Query: 2 GDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 ILSQ EID LL + DE T E R YD + +E L+ L +I++ Sbjct: 7 SKEILSQEEIDRLLAALASGNIDEVTEKKKEEIRYRKYDFRRPNKFSKENLRTLHLIHDN 66 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 +AR L LR + + V ++ Y +F ++P PT + L PL+G+ ++ + Sbjct: 67 YARLISNFLTGYLRTNISVKVASVDQATYEDFLVSVPTPTLITTFKLHPLKGSMVMETNL 126 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 +F + LFGG G P +V RE T E VI ++ LE + AW I +E E Sbjct: 127 QFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLAQAWAEIIKVEPEIE 184 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN-- 238 E + + SPN+IV F EI G N+CLPF +++PL L + Sbjct: 185 ALENNPRLHQVL-SPNEIVAIITFTTEILGNNGLINLCLPFEVLDPLLAKLSASYWFSHA 243 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHV 296 + + + + ++ + S+LE+ A LR+ + LK+ GD++ + + + + V Sbjct: 244 TAADREAFARHMEGFLAESELEVSAILGGTELRVREFLKIEVGDIVVLNRKVDEELELFV 303 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLIN 322 + + Q G + + +I +I Sbjct: 304 EDQKLFKVQPGRVGEKLCCQITGMIE 329 >UniRef50_A6M1D3 Flagellar motor switch protein FliM n=26 Tax=Clostridium RepID=A6M1D3_CLOB8 Length = 332 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 79/332 (23%), Positives = 148/332 (44%), Gaps = 10/332 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVK--DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D +LSQ EIDALL+ S + E + ++ YD + ++ +E ++ LE+I+ Sbjct: 1 MAD-VLSQNEIDALLSALSTGELGSEDVGKDEEKHKVKLYDFRSPQKFSKEHIRTLELIH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + +AR L R++ + + + Y EF ++ PT + + + PL GT + Sbjct: 60 DNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITIFKMAPLSGTIIFET 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P +D L GG G K + +EFT ++ ++ ++ + AW ++ +E E Sbjct: 120 NPQFSLQVIDVLLGGKGDR--KAQAKEFTDIDKNIMRQVTTGMISNLKLAWDSVLEVEPE 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP--PL 236 E T SPND V F VE+ + N+CLP+ +E + + LV Sbjct: 178 VETIETNPAINQ-TLSPNDPVALITFSVEMNKRSTFINMCLPYLSVEKILDKLVVQYAFK 236 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIA 294 ++ R+ L + + +E+VA ++ + LKL GDV+ ++ I Sbjct: 237 NDNEASMAESREKLEKGINKVDVEIVAELGTANITVDDFLKLTVGDVIKLDNKSSSPIKV 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 +V ++ G + + I + + +N Sbjct: 297 YVGNEECYYAKPGVVGKNAGVMILDITDKEVN 328 >UniRef50_B8I3P2 Flagellar motor switch protein FliM n=2 Tax=Clostridium RepID=B8I3P2_CLOCE Length = 328 Score = 299 bits (766), Expect = 9e-80, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 152/327 (46%), Gaps = 10/327 (3%) Query: 1 MGDSILSQAEIDALLNGD--SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 MGD ILSQ EID LL ++ + S E ++ +D + + + L+ IN Sbjct: 1 MGD-ILSQNEIDELLKALTTGDIDVQQIQSTKTEKKVKIHDFKKPPKFANDHKRTLQFIN 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E +AR + L LR + V ++ Y EF+ +L P L ++ PL G+ + Sbjct: 60 ENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPVILGIVDFTPLNGSVIFEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 PS+ + +D + GG G +V R FT E +I R++ L + W++I ++ Sbjct: 120 DPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWESIIAIKPR 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 + E +F I PN++V +V +G + G NIC+P +EP+ L Sbjct: 178 LEKIETNAQFAQI-IHPNEMVALITLNVVVGEVKGLINICIPHITVEPIMPKLSTKLWFT 236 Query: 239 SRNED--QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIA 294 + + ++ + ++ ++ H+ + + A S+ +S+ L L GDVLP++ + Sbjct: 237 NVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLDTNVNGDLEI 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLI 321 V +P ++ G + A++I ++ Sbjct: 297 LVGDLPKFKAKPGVKKNKVAIKITEVL 323 >UniRef50_A6TKX0 Flagellar motor switch protein FliM n=4 Tax=Clostridia RepID=A6TKX0_ALKMQ Length = 331 Score = 296 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 157/326 (48%), Gaps = 10/326 (3%) Query: 1 MGDSILSQAEIDALLNGD--SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D +LSQ EID L EV+ + E I+ YD + +++ +++L+ L+II+ Sbjct: 1 MSD-VLSQNEIDDLFQALNSGEVEIDEMKDEKIEKKIKSYDFKSPKKLAKDQLRTLQIIH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + F+ L LR V + Y+EF+ ++ P L++I+ PL G +V Sbjct: 60 DNFSGMLNTFLAGYLRTYVQAEVLTVEELSYYEFSNSVVNPAVLSIINFTPLEGQIIVDI 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 SPS+ F ++ + GG G+ ++ R FT E +I +++ + D W+ + L+ + Sbjct: 120 SPSISFTLIERILGGMGKETEEI--RPFTEIETTLIKNLMRQVINLMIDPWENVIELQPK 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL-- 236 + E +F I SPND V +++IG++ G NIC+P +IEP+ + L Sbjct: 178 LDKIETNSQFAQIV-SPNDTVALITLNLKIGDVEGMMNICIPHIVIEPILDKLSTKLWFS 236 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIA 294 +S+ + + L ++V+ S +++ A + + L+L GDV+ ++ P + Sbjct: 237 NSSKPVTERDKKALQKRVEKSAVDITAQLGSTCVTVKDFLELQMGDVIMLDNPVDKELQI 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHL 320 V GT + A+++ + Sbjct: 297 LVGDKIRYRGLPGTSKNKLAVKVTGI 322 >UniRef50_C1SNF9 Flagellar motor switch protein FliM n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNF9_9BACT Length = 336 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 92/335 (27%), Positives = 159/335 (47%), Gaps = 13/335 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSG----ESDIRPYDPNTQRRVVRERLQALEI 56 M D ILSQ EIDALL+ S ++ V I YD RV +E+L+++ Sbjct: 1 MAD-ILSQEEIDALLSTVSTDEEIADEKVEQLDFVPKKISVYDFRRPDRVSKEQLRSIRN 59 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 ++++FAR+F L N LR DIT+ ++ Y EF +LP PT+ N+I + P+ G ++ Sbjct: 60 LHDKFARNFSSTLSNYLRTITDITLTSVDQMTYGEFLMSLPDPTSFNIISMIPMEGNAVL 119 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP-L 175 +PSLVF VD L GG G+ + RE T EQ +++ +L L L+ + W+ I P + Sbjct: 120 EINPSLVFPIVDKLLGGTGK--PLFQTRELTSLEQHIMDGILGLILKDLEEVWRQIIPNI 177 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 ++ SE I S N++V+ V+ G + G N+C+P ++EP+ + + Sbjct: 178 RLKKELSENSPHIIQIV-SQNEVVILVVCEVKFGEVLGMMNLCIPAIVLEPVLGKISSSD 236 Query: 236 L--ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDR 291 + D ++ + +++ L + +L L GD++ + Sbjct: 237 WLIGAKKGLQGEKEDEIMHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRP 296 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + H + + GTL + A++I I + Sbjct: 297 VEIHFNNKQKFLGEVGTLGVKKAVKITQFITESDD 331 >UniRef50_A5D0K2 Flagellar motor switch protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0K2_PELTS Length = 330 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 10/332 (3%) Query: 4 SILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 +LSQ+EIDALL+ S EVK E + + + YD + +++L+ L++++ F Sbjct: 2 DVLSQSEIDALLSALSTGEVKIEELKETQQQVEYKRYDFRRPNKFSKDQLRTLQVLHGVF 61 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR L LR + I V ++ Y +F R++P PT L + L PL+GT + Sbjct: 62 ARLLSNFLTGYLRSNVQIEVASVDQLTYEDFIRSIPTPTVLAIFSLNPLKGTAIAQLDSM 121 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 +F +D FGG+G P V RE T E V+ ++ LE + AWK I +E Sbjct: 122 FLFPIIDLFFGGNGEAPKAV--RELTDIELSVVRKISMKILEHLALAWKDIVHVEPVIET 179 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLV--NPPLEN 238 E I S ++IV ++G G N+CLPF +++P+ L Sbjct: 180 VETNPYLHQI-FSFSEIVALITLTTQVGESARGFINLCLPFPLLDPVVSQLSFQRRFGPQ 238 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHV 296 + + L + ++EL + + L+L GDVL ++K + ++ Sbjct: 239 TSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGDVLILDKKVDQDLDLYI 298 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 Q G L + A++I L ++ Sbjct: 299 GEHLKFKVQAGALGSKLAVQITALATEGEKNV 330 >UniRef50_Q30SP5 Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM n=48 Tax=Epsilonproteobacteria RepID=Q30SP5_SULDN Length = 372 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 86/332 (25%), Positives = 154/332 (46%), Gaps = 14/332 (4%) Query: 1 MGDSILSQAEIDALLNGDSEVK-------DEPTASVSGESDIRPYDPNTQRRVVRERLQA 53 M D ILSQ EIDALL+ + + + S + + YD RV +E+L+A Sbjct: 1 MAD-ILSQEEIDALLDVVDDEDGGGDLFDEMGSDSHTSNRQVTLYDFKRPNRVSKEQLRA 59 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 + I+++ AR + +++R +I + ++ Y EF +LP PT+ N+ +KPL G+ Sbjct: 60 FKGIHDKMARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLEGS 119 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 G++ +PS+ F +D L GG G REF+ E + +L++ + DAW + Sbjct: 120 GVIEINPSIAFPMLDRLLGGKGEPFDA--SREFSDIELSLFETILRVMMSTLKDAWGPVM 177 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN 233 + E I N+IVV + IG +G NIC P +EP+ L + Sbjct: 178 EIFPNIESKESSPNVVQIVAQ-NEIVVMVVMEIIIGQSSGMMNICYPVIALEPVLPKLAS 236 Query: 234 P-PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--D 290 + N + ++ L + +++ + A + L L +L L GD++ + P D Sbjct: 237 RDLMLNETSTKKSRNTELHVLLGGAKVGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADD 296 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + VDG + G + ++++ +I+ Sbjct: 297 IVTICVDGKDRFRGKIGLRRFRKSVQVTEIID 328 >UniRef50_A9BEY4 Flagellar motor switch protein FliM n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEY4_PETMO Length = 359 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 8/322 (2%) Query: 3 DSILSQAEIDALLNGDSEVKD---EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 D L+Q EID++L S + E I+ YD + RE+L+ L++I+E Sbjct: 4 DETLTQEEIDSILKSMSSGESPEEVLEEYQEEERRIKDYDFRRPMKFSREQLRTLQLIHE 63 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 FAR L R D+ +I + EF ++L PT + + + G+ ++ Sbjct: 64 SFARELSTYLSGRSRTFVDVKYASIDQITFSEFQKSLNSPTFIVIFSSEAFSGSAILQMG 123 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 L ++ +D L GG G ++ R T E ++ + + L S +W I + Sbjct: 124 LDLGYVIIDRLLGGPGNTLEEI--RPPTEIEMNILRKESAVMLRMLSKSWSNIEEFDANL 181 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E +F + PN++ + V I N+ G N+C P S +EPL + L S Sbjct: 182 ENLETNPQFVQVA-PPNEMTILITLSVTIKNVQGFVNLCFPSSSLEPLNDKLTTRMWTTS 240 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 + +++NL + + S+L L A + L+ L L GDV+ ++ + I ++ Sbjct: 241 YRHTEEFKENLRQSLLLSKLNLSAILGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDLEIE 300 Query: 298 GVPVLTSQYGTLNGQYALRIEH 319 P+ G G Y+++I Sbjct: 301 ERPIFKVNVGKSKGFYSVKIVE 322 >UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67K08_SYMTH Length = 308 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 141/323 (43%), Gaps = 19/323 (5%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 ++ LSQAEIDAL+ ++IR YD + ++ ++ L +++E A Sbjct: 2 ENPLSQAEIDALVMSTG-------------TNIRTYDFRRPSKFNKDLIRTLVLVHENLA 48 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R + L LR ITV + + EF + LP PT L PL G L+ S ++ Sbjct: 49 RLLQSYLSAGLRTWVQITVRSTNQYTFSEFTQLLPNPTIALSFRLNPLPGMCLLEISHNI 108 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 F V+ +FGG G RE T E +I R+++ +AW+ + ++ Sbjct: 109 AFAIVERVFGGPGS--DLQPQRELTEIELGIIQRVVRDTFGPMKEAWRNVAEIDPAIEAV 166 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV-NPPLENSRN 241 E F I +P ++V VEIG G P+S +EP+ L L +++ Sbjct: 167 ETNPVFIQIE-NPTEVVAAITLAVEIGEHLGHMTFAFPYSTVEPVLSRLSPQSWLAETKH 225 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGV 299 + + ++L R VQ + L + A +RL + L L GDV+ ++ + V Sbjct: 226 KSPSDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNK 285 Query: 300 PVLTSQYGTLNGQYALRIEHLIN 322 ++ G + + A++I + Sbjct: 286 LAFQAKPGVVGERMAVQITRRVT 308 >UniRef50_UPI00016C0DBD flagellar motor switch protein FliM n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0DBD Length = 327 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 75/327 (22%), Positives = 153/327 (46%), Gaps = 9/327 (2%) Query: 1 MGDSILSQAEIDALLNGD--SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M + +LSQ EIDAL E+ E E ++ Y+ + RE L+ LE++ Sbjct: 1 MSE-LLSQEEIDALFAALDTGELDVEEMKEKDKERIVKEYNFARPTKFSREHLRTLELMG 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E +AR L L+R I V + + +F +L P L ++ PL+ L+ Sbjct: 60 ENYARLISQYLSGLMRTLVPIKVVSSEAITFSDFTSSLSNPIALAIVDPYPLKNNMLLEL 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 S ++ F ++ L GG+G V REFT E ++ R+L+ ++ + W+ + L+ Sbjct: 120 STNVAFAFLERLLGGEGTELEHV--REFTSIELVILIRVLEHFVDYMREPWENMVALKPR 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-VNPPLE 237 R E + N+ +P ++V F ++ G + G N+C+P+ +EP+ + L + + Sbjct: 178 MSRVETNSQILNM-IAPTEMVALITFSIQFGAVDGLMNLCIPYLTVEPIMDKLNTSYQFQ 236 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDR--IIAH 295 +S ++ N+ ++ + + + A + + + ++L GD++ ++ I + Sbjct: 237 SSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIELQIGDIIRLDTTIDSLIDVY 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLIN 322 V V + G + A++I+ +++ Sbjct: 297 VGNVVKFKAVPGIHKNKSAVQIKQILD 323 >UniRef50_C6NYG8 Flagellar motor switch protein FliM n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG8_9GAMM Length = 366 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 183/346 (52%), Gaps = 24/346 (6%) Query: 6 LSQAEIDALLNGDS------EVKDEPTASVSGESD-----------------IRPYDPNT 42 LSQ EIDA++ G S + D P +V E+ I P D Sbjct: 8 LSQEEIDAMMGGGSPSEKNTDADDGPGKTVGTEARRTDQASTSQAPTSSGPTIVPLDLLN 67 Query: 43 QRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL 102 Q R+ R R+ +E++N+RFAR FR LFN LR + DI + +IQ Y E+ + +P+ Sbjct: 68 QDRMNRSRMPTMEVLNDRFARSFRGSLFNYLRVNADIISLSAQIQKYGEYIGKIALPSYF 127 Query: 103 NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLAL 162 ++ L PLRG+ L + P L + ++ FGG+GR K+EGR+F+ EQRV N+++ A+ Sbjct: 128 VMVSLTPLRGSMLFIMDPYLCYAVIEAFFGGNGRLEPKLEGRDFSVIEQRVFNKIIDHAV 187 Query: 163 EGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS 222 E ++ AW+ I L + +RS+++ +F +I S + VV + F +E+ +G+ C+P++ Sbjct: 188 EDFTSAWEPIIKLRPKVLRSDVKSQFVSIA-SSTEGVVGSVFEIEMERWSGKLYTCIPYN 246 Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 +EPLRE LV+ + D +W+ L +Q++ +++ A + LS+ L GD Sbjct: 247 TVEPLREQLVSGVAADQSEMDPSWKQMLHMDIQNAMVDVSVILASQDIPLSRARTLQKGD 306 Query: 283 VLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 VL ++ +V+ + + +YG QYA+++ P + Sbjct: 307 VLSFDRVQDARVYVEDILIGEGRYGAFKNQYAVKLVSYRTPSEEDV 352 >UniRef50_Q7UNV1 Flagellar motor switch protein fliM n=1 Tax=Rhodopirellula baltica RepID=Q7UNV1_RHOBA Length = 428 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 152/368 (41%), Gaps = 47/368 (12%) Query: 1 MGDSILSQAEIDALLNG------DSEVKDEPTASVSG----------------------- 31 M + LSQ +++ LL D E D PT + Sbjct: 1 MSNESLSQNQVENLLKAMETADLDEEGTDAPTETKDSAESKDAENATVGSSAPVVGAAHP 60 Query: 32 ------------ESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDI 79 + + YD RV +++++A+ ++E AR+F + LLR ++ Sbjct: 61 ADSKPYSPGVPTGARVTAYDFKRPERVGKDQMRAMHSLHESIARNFGASISGLLRTMIEV 120 Query: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139 + ++ Y EF +L P+ N+I PL G ++ +P L + +D + GGD P Sbjct: 121 KLLSVDQLTYSEFVFSLDNPSCFNVIKPLPLEGHWVLDIAPGLAYAIIDRMLGGDP-VPG 179 Query: 140 KVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIV 199 + R T E R++ R+++L LE AW+ + LE +E + I PN++ Sbjct: 180 ETIRRPLTEIETRLMCRVVELFLEQIVPAWENVIQLEPSIHTTESNPQLAQIV-PPNEVA 238 Query: 200 VNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL--ENSRNEDQNWRDNLVRQVQHS 257 + F V +G G N+C+PF+ IE L N R + + + Sbjct: 239 ILVGFEVLLGKNRGMMNLCIPFNSIEKYNAKLSRNGWVGYGKTNPTPQSRRKIADSIDAA 298 Query: 258 QLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYAL 315 +++V A +R S +L LN GD++ E+ + V V + G G+ A+ Sbjct: 299 PVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALELSVQDVHKFAAVAGAYKGKKAV 358 Query: 316 RIEHLINP 323 +++ + P Sbjct: 359 QVQSTVEP 366 >UniRef50_C8W1I5 Flagellar motor switch protein FliM n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1I5_DESAS Length = 334 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 147/329 (44%), Gaps = 13/329 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGES-----DIRPYDPNTQRRVVRERLQALE 55 M D +LSQ EID LL+G + E + YD + +L+ L+ Sbjct: 1 MSD-VLSQKEIDRLLDGLKSGIIKAEDLKEAEIQELRMRYKSYDFRRPNKFSENQLRTLQ 59 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 +++E + R L LR S + V ++ + +F ++P PT L + L PL G + Sbjct: 60 MLHEGYGRLLSSYLTGYLRASIVVRVISVDQFTFDDFVGSVPSPTLLTVFSLPPLTGPAV 119 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + +P +F +D LFGG G+ +V RE T E VI +++ LE AW+ + + Sbjct: 120 LETNPQFLFPIIDLLFGGTGKMSDRV--RELTDIELSVIKKLIPKLLEQLVLAWQDLYEV 177 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNP 234 E E + + +P +I+ F IG + G N+CLP+ M+EP+ L Sbjct: 178 TAELQSIETNPRLMQV-MNPGEIIALLTFSTVIGGTSRGLINLCLPYLMLEPVLSKLSIH 236 Query: 235 PLENSRN-EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDR 291 ++ ++ L + ++L L A + + + L+L GDVL +++ + Sbjct: 237 YRNTRKDMAKEDDLRRLEYWMGQAELTLTAVAGETKISVRDFLQLQEGDVLTLDRRIDED 296 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + ++ Q GT+ A++I L Sbjct: 297 VDLFLEEKLKYKVQPGTMGRFMAVQITSL 325 >UniRef50_Q2NX04 Flagellar motor switch protein FliM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NX04_SODGM Length = 340 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 150/298 (50%), Positives = 200/298 (67%), Gaps = 4/298 (1%) Query: 37 PYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL 96 P+D +RR ERL+ LE+IN+ FA FR LF L++R DI+ AI IQPY EFA L Sbjct: 44 PFDAAQRRRQGGERLKGLEMINQDFAGRFRSALFILMQRRTDISAEAILIQPYREFAAQL 103 Query: 97 PVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINR 156 P +LNLI LKPLRG L F+P L+F +D LFGG GR P E R FT EQRVI+R Sbjct: 104 RPPASLNLIDLKPLRGNTLFAFTPGLIFTTLDTLFGGSGRLPDAQE-RAFTPAEQRVIDR 162 Query: 157 MLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFN 216 +LKL L+ Y DAW ++PLE E++ +E +FT S ++VV +PF V IG + GEF Sbjct: 163 LLKLMLQAYGDAWLGLHPLEPEFITAETSCRFTGF--SDGEMVVISPFRVAIGAMQGEFA 220 Query: 217 ICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL 276 I + +EPL E+L P E+ R + +WR NL RQ+Q ++LELVA FAD+ L LS+++ Sbjct: 221 IVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARQLQGTELELVARFADLPLCLSRVM 280 Query: 277 KLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSL-NEEQP 333 +L GD+LPI +PDR+ A VDGVPV YG+LNG+YALR+EH+IN ++ L N++ P Sbjct: 281 ELRRGDILPIPRPDRLTACVDGVPVFLGNYGSLNGRYALRVEHVINQGIDQLNNKDIP 338 >UniRef50_B3EAW6 Flagellar motor switch protein FliM n=9 Tax=Desulfuromonadales RepID=B3EAW6_GEOLS Length = 331 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 147/323 (45%), Gaps = 6/323 (1%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVS-GESDIRPYDPNTQRRVVRERLQALEIINERF 61 + IL++AEI+ALLN + + EP +S E YD R + L+I+ + F Sbjct: 2 EKILTKAEIEALLNAVFDGRIEPEKELSKSEGTAVSYDLFNTEAY-RGFVPNLDIVYDGF 60 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 R R+ L N LR+ +I R + +F + LP P + + L PL+G L+ S Sbjct: 61 IRFNRITLSNRLRKVVEIKKVGARSYKFDDFLQTLPSPVCMAIFKLDPLKGAALIAMDSS 120 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L F VD++ GG R + R FT E R++ +L L +W + P ++ +R Sbjct: 121 LAFAIVDSVLGGTSRTALALN-RLFTTLELRLVEMVLADVLADLEKSWAPLYPAKLSLLR 179 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 EM + I P VV V I G +P IEP+R+ L + Sbjct: 180 MEMNPRLVTIV-PPEYQVVTMTVKVHIEENVGTMIFVVPIMTIEPIRDKLKEGMQFDLMA 238 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGV 299 D W L ++ + +EL + ++ L ++L L GD + ++KP ++ V+GV Sbjct: 239 IDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELLVKVEGV 298 Query: 300 PVLTSQYGTLNGQYALRIEHLIN 322 P G +G A++I +I+ Sbjct: 299 PKYQGIPGIRHGNKAMQISDIIS 321 >UniRef50_A8U604 Flagellar motor switch protein fliM n=1 Tax=Carnobacterium sp. AT7 RepID=A8U604_9LACT Length = 333 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 9/326 (2%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGES---DIRPYDPNTQRRVVRERLQALEIINER 60 +LSQ EID+LL + + E ++ YD R+ +E + L +I E Sbjct: 3 QVLSQQEIDSLLQAVESGEIDAAGIDEQEQEKNKVKSYDFRRPARLSKEYITTLNMIFEE 62 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FA+ L +R + D+ + +I + EF ++P T + L PL GT ++ +P Sbjct: 63 FAKIIGNILSTQIRTNVDVKLASIEQVSFDEFVHSVPRFTLMGLFRSAPLEGTQIIELNP 122 Query: 121 SLVFIAVDNLFGGD--GRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 L VD L G + + FT E ++ +L + + AW+ + L+V+ Sbjct: 123 QLCLQLVDLLCGSSEIRKNDEVMSKNSFTDIEMAILEEILTNFSQSFELAWRDVVDLKVK 182 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV-NPPLE 237 +E + T SPN+ VV VE+ + N+C+P+ E + E L Sbjct: 183 IDSTETNPQILQ-TMSPNEPVVLVTLTVELHGVKTFINVCVPYIFFEGILEKLSLRNWFH 241 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAH 295 + + D L + + + + + + + L L+L GD++P++ D ++ Sbjct: 242 SEKETDHTDSGKLEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLS 301 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLI 321 V+ +P + G A+ + I Sbjct: 302 VEELPRYFVKPGLKGKNMAVEVLQYI 327 >UniRef50_C2ED82 Flagellar motor switch protein FliM n=5 Tax=Lactobacillales RepID=C2ED82_9LACO Length = 336 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 12/326 (3%) Query: 3 DSILSQAEIDALLNGDSEVK---DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 D +LSQ EIDALLN + + D + +R YD R+ +E + L +I E Sbjct: 2 DQVLSQEEIDALLNAMNTGEISEDTIEEEKNDAPKVREYDFRRPTRLSKEYINTLHMIFE 61 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F++ L LR + + + AI Y EF ++P T L + H +PL+G+ L+ + Sbjct: 62 DFSKMTGNVLSTQLRTNVSVDLAAIEQISYDEFMHSIPRVTLLGMFHSEPLKGSQLLEIN 121 Query: 120 PSLVFIAVDNLFGG---DGRFPTKVEG--REFTHTEQRVINRMLKLALEGYSDAWKAINP 174 P L + V+ L GG + P + F+ + ++ + K + Y +WK I Sbjct: 122 PQLCSLMVELLCGGLDVRTQHPDEKIPSIESFSDIDLALMRELFKEIVNVYKTSWKDIVE 181 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV-N 233 L ++ + + + SPN+ VV F V++ ++ N+C+P+ E + + L Sbjct: 182 LNSKFDTIDTNPQLSQ-AMSPNEPVVLVTFTVKVFGISTFINLCIPYVFFEGILDKLSIR 240 Query: 234 PPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDR 291 ++S +++++ + R + + ++ + D + + L L GDV+ ++K Sbjct: 241 NWFDSSSDDNEDDSLEIKRGLNNVEMVIETKLGDAQMSFADFLNLEAGDVIRLDKKTTSP 300 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRI 317 + +++G P + G +GQ A+ + Sbjct: 301 LETYIEGEPFFYVKPGQKDGQLAIEL 326 >UniRef50_A9HHK3 Flagellar motor switch protein FliM n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HHK3_GLUDA Length = 395 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 83/339 (24%), Positives = 156/339 (46%), Gaps = 20/339 (5%) Query: 1 MGDSILSQAEIDALLN---GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 MG +L Q+EID+LL G +K+E ++ Y ERL LEI+ Sbjct: 52 MGGHVLDQSEIDSLLGNAFGGLPIKEESGLERVIKAGFVAY----------ERLPMLEIV 101 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 +R R L + + +IT+ +R + ++ +P + + GL+V Sbjct: 102 FDRLVRMLSSTLRSFTNDNVEITIDGMRSMSFGDYMNAVPSSSLFAVFKAVQWENYGLIV 161 Query: 118 FSPSLVFIAVDNLFGGD-GRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 +L + +D L GG G VE R T E+ +I +++ L L S A+ + ++ Sbjct: 162 IDSALSYSIIDILMGGPRGVGYAGVEARPHTAIERALIEKLVTLTLNDLSTAFNPVCTID 221 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + + R E+ +F I + N VV T H+++ + +G ++ +P+ +EP+R+ L + Sbjct: 222 LTFERLEVSARFAAIARASN-AVVMTKLHIDMEDRSGSLDLIIPYVTLEPVRDQLSQQFM 280 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK----PDRI 292 D W +LV ++ + +++ A F + ++ LS++L L PG ++ P + Sbjct: 281 GERFGRDSKWEGHLVSEILETDIQVSAVFEEKTILLSEVLGLRPGMLISFPHQNGTPIHV 340 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEH-LINPILNSLNE 330 P+ + G L + A++IE L+ P +NE Sbjct: 341 RLQCGQTPLFEGRLGKLQDKAAVKIEKRLVPPAGPHMNE 379 >UniRef50_B5Y7E9 Flagellar motor switch protein FliM n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7E9_COPPD Length = 326 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 152/321 (47%), Gaps = 10/321 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M ++ LSQ EID LL+ + E + E +R YD ++ +E+L+ +++++E Sbjct: 1 MAET-LSQEEIDTLLSAIKAGQAELVQ--TKEKVVRKYDFRRPDKLSKEQLRTIQMLHEN 57 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FAR L LR + I++ ++ Y E+ R+L PT + L+ + + + S Sbjct: 58 FARGASTELAGYLRSAMSISIVSVDQVTYQEYIRSLSDPTFMYLVPIIDVTS-VIFEMSL 116 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 VF +D L GG G+ +V RE T E ++NR++ + L+ + +AWK I + Sbjct: 117 DFVFAIIDKLLGGPGKPLREV--RELTSVEATLMNRVMDVYLKHWLEAWKPIVQWNLGKP 174 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-VNPPLENS 239 E F I +D+V+ + ++G T IC+P+ +E + L + S Sbjct: 175 TLEYSPGFVQIMPG-SDVVIVITYEEKLGEKTAIGTICVPYMAMEGFVQNLTAHRWFGVS 233 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 + +W+ L+ ++ +E+ A + S+ + +ILK N GDV+ + + + + V+ Sbjct: 234 KPTPDDWKTTLMEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRSDEEVDLLVE 293 Query: 298 GVPVLTSQYGTLNGQYALRIE 318 G G + AL + Sbjct: 294 GNLFAKGIPGIYQRRKALLVT 314 >UniRef50_Q5ZUK6 Flagellar protein n=4 Tax=Legionella pneumophila RepID=Q5ZUK6_LEGPH Length = 355 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 165/352 (46%), Gaps = 32/352 (9%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVS----------------------------- 30 M + +LSQ EIDALL+ E D+ T Sbjct: 3 MTEKDVLSQEEIDALLDSVDESIDDETNDEELSSRDQPVRKKPEDTTSQELNSNFDSDKK 62 Query: 31 -GESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPY 89 E ++ + Q R+V+ +L L+ I +R R F +++L R +I + I + Sbjct: 63 VAEEGVKTLNFTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKH 122 Query: 90 HEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHT 149 EF R+LP P+ + + KPLRG G+++F + V+ VD FGG+ +F + + +FT T Sbjct: 123 KEFMRSLPNPSLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTAT 182 Query: 150 EQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG 209 E RV+ + K + A + I L+V E + NI P ++++ F + G Sbjct: 183 ELRVMEVVTKKLVTNLIHACEPIIQLDVTKFNDETNPQLVNIA-EPEEMLLVARFVLNFG 241 Query: 210 NLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADIS 269 TG F LP+SM+EP+++ L D NW ++L ++ +L + A+ A+ Sbjct: 242 KETGAFYFILPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETV 301 Query: 270 LRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 L Q++ GD +P+E + + ++G P T+ G+ N + AL++ +I Sbjct: 302 STLGQVMAWKVGDFVPLEINEEVTLDIEGTPSFTATLGSANEKRALKVIKII 353 >UniRef50_Q2RZE2 Flagellar motor switch protein FliM n=2 Tax=Rhodothermaceae RepID=Q2RZE2_SALRD Length = 372 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 150/331 (45%), Gaps = 16/331 (4%) Query: 6 LSQAEIDALL-NGDSEVK--------DEPTASVSGESDIRPYDPNTQRRVVRERLQALEI 56 LSQ EID LL + D+E + DE A E +PY+ R + + + L Sbjct: 5 LSQEEIDVLLGDADAEEQEVPTGGAGDEQDAQAEKEKQAQPYNFKRPRLFSQTQKRILNQ 64 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 ++E FAR + L LR DI++ A+ Y EF + P+ L ++ L + Sbjct: 65 VHESFARDLSVYLSAQLRTIVDISLTAVDQVLYSEFVMSSAPPSALYVLREDELEYRSIF 124 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 P LV ++ L GGDG+ E RE + EQR+++R++K A ++W+ L Sbjct: 125 EIDPRLVVYTIEKLMGGDGQLMD--ESREVSPIEQRIMSRVMKRAYRKLEESWRKAYELS 182 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL--RELLVNP 234 VE V E +F I + + + F V + + NIC P+ M+E + R + Sbjct: 183 VEEVAFESNAEFVQIIPAA-EPALVASFDVRVYDEPSFINICYPYLMLEQMLGRSGMEQW 241 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRI 292 ++ + RD ++ +++ L A L ++++ +L GDV+P+++ D I Sbjct: 242 ISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPI 301 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 V+G + G Q ALRI +P Sbjct: 302 KVFVNGEQKFEAVPGRSGRQRALRITAAESP 332 >UniRef50_B0MPD5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPD5_9FIRM Length = 331 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 147/334 (44%), Gaps = 16/334 (4%) Query: 1 MGDSILSQAEIDALLNG-DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D+ L+Q +IDA+L+ S + + +I+ YD T ++ +E+++ LE I E Sbjct: 1 MADT-LTQEQIDAMLSSVLSGGDTASLDTHEEKEEIKEYDFRTPKKFTKEQIKILERIFE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL-----KPLRGTG 114 ++RH + LLR +++ +I Q Y EF+ LP T + ++ L Sbjct: 60 NYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNA 119 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 ++ S SL F +D + GG G + R+FT E V+ +++ S AW Sbjct: 120 ILQLSNSLTFTMIDRMLGGRG--TYQDTDRDFTEIEINVMRGIVERFTSLMSQAWDGYVD 177 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + E + + + ++ ++ V + + + C+ ++ + + Sbjct: 178 TNPKLESIETNSRVISAADA-DETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAK 236 Query: 235 PLENSRN----EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP- 289 R ++ ++NL+ + S+L + A D L L +L L D++P+ KP Sbjct: 237 FSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPI 296 Query: 290 -DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 D + V + GTLNG+ A RI++++ Sbjct: 297 TDNVQLKVGSTCWFDGKLGTLNGKKAFRIDNILK 330 >UniRef50_C6N2P9 Flagellar motor switch protein FliM n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N2P9_9GAMM Length = 358 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 165/358 (46%), Gaps = 37/358 (10%) Query: 1 MGDS-ILSQAEIDALLNGDSEVKDEPTASVS----------------------------- 30 M + +LSQ EIDALL E + Sbjct: 1 MAEKNVLSQEEIDALLQSVDESSEGEAQEAETQETADVKSPRKKTPRAGKYAESESDSSI 60 Query: 31 ------GESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAI 84 +S+++ + ++Q R+V+ +L L+ I +R R F ++ L + +IT + Sbjct: 61 ESTVVFDDSEVKTLNFSSQERIVKGKLPVLDRIYDRAVRSFATDIYQLTAKDFEITQDQM 120 Query: 85 RIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGR 144 I + +F +LP P+ +++ KPLRG G+++F + V+ VD FGG +F + + Sbjct: 121 LIIKHRDFMESLPNPSLMSIYKFKPLRGKGIIMFDSTFVYDLVDYYFGGSTQFLAQKDRT 180 Query: 145 EFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPF 204 +FT TE RV+ + + + AWK I L++ E + NI P+++++ F Sbjct: 181 DFTATELRVMEAVTTKLIANLTLAWKPIIQLDISKFNDETNPQLVNIA-EPDEMLLVVRF 239 Query: 205 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVAN 264 ++ G TG+F LP++M+EP++E L D NW +L ++ +L + + Sbjct: 240 SLDFGKETGDFYFILPYTMVEPIKEQLELGASRPDDEIDPNWVKSLKEELMDVELVISSA 299 Query: 265 FADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 A L ++ GD +P+E + + V+G P T+ GT N + AL+I I+ Sbjct: 300 MAQTKSTLGTVMSWQAGDFIPMEMKEIVTLDVEGTPGYTATLGTANEKRALKIIKNIS 357 >UniRef50_Q5FT23 Flagellar motor switch protein FliM n=1 Tax=Gluconobacter oxydans RepID=Q5FT23_GLUOX Length = 343 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 87/329 (26%), Positives = 153/329 (46%), Gaps = 17/329 (5%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQAEID+ DS V A SG + + V ERL LE++ +RF Sbjct: 11 DHVLSQAEIDSFFGKDSVVT--GAADSSGIERVV-----STSGVSSERLPMLEVVFDRFT 63 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R L N + + ++ + Q + ++ N+P + + G+VV S SL Sbjct: 64 RILTTSLRNFTSDNVEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSL 123 Query: 123 VFIAVDNLFGGDGRFPT-------KVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 ++ VD L GG R + + GR T E+ +I M+++ L+ ++ + + Sbjct: 124 IYSIVDALLGGHVRGDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFSPLCAV 183 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + R EM +F I + N VV F +++ G+ +I LP + +EP+R++L+ Sbjct: 184 NFHFERLEMNSRFAMICRAGNG-VVTARFGIDMEGRGGDVDIVLPHATLEPVRDILLQQF 242 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDR--II 293 + D W ++L R++ + L L A + ++ L I+KL PGD L + + + Sbjct: 243 MGEKFGHDGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVS 302 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + T + G GQ A++IE ++N Sbjct: 303 LRCGEHVLFTGRVGRKQGQVAVKIEDVLN 331 >UniRef50_B6IQ99 Flagellar motor switch protein FliM n=2 Tax=Rhodospirillum centenum RepID=B6IQ99_RHOCS Length = 352 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 75/319 (23%), Positives = 147/319 (46%), Gaps = 11/319 (3%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 + LSQ EID LL+ + K T SV + + V +RL L+++ +R Sbjct: 27 SEKTLSQTEIDRLLD-VDDSKSVRTRSVIDQIVNSSF-------VNYDRLPMLDVVFDRL 78 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 R NL + ++TV I + ++ +P+P+ + ++ + L+ Sbjct: 79 VRLLNTSFRNLTSGTVEVTVQQIASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSE 138 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L++ VD L GG P ++GR +T E+ + R+++ L+ A+ ++ + R Sbjct: 139 LIYSIVDILLGGRRSDPAPIDGRPYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACER 198 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 E +F IT S N+ ++ F V + G ++ +P++ +EP+R+LL+ + Sbjct: 199 VETTPQFAVITRS-NNACISARFQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFG 257 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK-PD-RIIAHVDGV 299 D W +L +++ + ++L A + L+ +L G L ++ PD + + V Sbjct: 258 RDSMWETHLKNELRRTSVDLSAVLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHV 317 Query: 300 PVLTSQYGTLNGQYALRIE 318 P+ + G NG A+RI+ Sbjct: 318 PMFVGEMGQRNGNVAIRID 336 >UniRef50_C8WYW2 Flagellar motor switch protein FliM n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYW2_DESRD Length = 336 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 163/323 (50%), Gaps = 8/323 (2%) Query: 3 DSILSQAEIDALL----NGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 D +L+Q EI+ LL +G+ ++ E S D++ D + R R+ +II Sbjct: 2 DKLLTQDEINDLLEAIESGEVDIDAEADEPSSSNRDLQRLDLFRGQTSARWRVANFDIIL 61 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + FAR+ + + N L+RS + AI + + F ++L + + ++ +PLR GL++F Sbjct: 62 DAFARNSGISMANRLKRSVSVKRVAIETETFENFLQDLQEQSLIGIVSFEPLRSGGLLIF 121 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 L F ++ +FGG+ + RE T E V+ +++ + + + A++ ++ L+ Sbjct: 122 DCPLSFCLLEVMFGGNSEAGISIPDRELTSIEINVLKNVMRDSCQDWEAAFEPLDELKTN 181 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 V++E+ + +I SP V+ + F V+ GN+ G+ ++ +PF IEP +E L N + Sbjct: 182 LVQAEINPRLVSIV-SPETEVLVSRFSVKAGNIFGQMSLVIPFFAIEPYKEKLKNRMFDV 240 Query: 239 -SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRI--IAH 295 + + Q W + ++ + E+ A FA SL + +IL L GD++ + + Sbjct: 241 ITVSGGQAWTKTIHDEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQRVL 300 Query: 296 VDGVPVLTSQYGTLNGQYALRIE 318 V+ P + GT G+ A+RI Sbjct: 301 VEQKPKFQAVAGTRKGKKAVRIT 323 >UniRef50_A8ERA3 Flagellar motor switch protein FliM n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERA3_ARCB4 Length = 368 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 157/342 (45%), Gaps = 14/342 (4%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEP-----TASVSGESDIRPYDPNTQRRVVRERLQALE 55 M + LSQ EIDALL+ + D + E + YD RV ++L+AL Sbjct: 1 MAE-FLSQDEIDALLDIAEQGDDIDGTNPLDKFTAKEKNYSIYDFKKPNRVTLDQLKALT 59 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 ++++ R F L ++LR+ DI + I Y EF ++P T+L+ + +KPL G + Sbjct: 60 TMHDKMLREFINDLSSMLRKIVDIKLTTIEQMTYGEFILSIPQVTSLSTLSMKPLDGRIV 119 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + +P++ + +L G RE T E +V+ K+ ++ W I+ L Sbjct: 120 IECNPTISHKVIADLLGSGAVNTMDNLDRELTEIEIKVLEHFYKMFIKILYKTWSDISSL 179 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 S+ I S +DIV+ F + I +G +IC P S IEPL +V+ Sbjct: 180 NFRIESSDTNANAIQIV-SDHDIVLLVVFEITIDEDSGFLSICYPISYIEPLLNKIVDKI 238 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK---PDRI 292 +N+ + ++++ + +++++ A A+ L ++IL L D++ K Sbjct: 239 FSEGKNKKLSRKEDIKTLISGARMKVEAIMAETELTTAEILNLKENDIIVFNKNASSSSA 298 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLIN----PILNSLNE 330 +++ ++ G N + A++I+ ++ L++L E Sbjct: 299 TVYINKKEKFSAVSGISNNRKAVQIKANLDREKQETLDTLRE 340 >UniRef50_P34009 Flagellar motor switch protein fliM n=45 Tax=Alphaproteobacteria RepID=FLIM_CAUCR Length = 373 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 148/326 (45%), Gaps = 15/326 (4%) Query: 2 GDSILSQAEIDALLNGD--SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 + IL+Q EID+LL D + D+ T + + V ERL LEI+ + Sbjct: 48 SERILNQDEIDSLLGFDLSGDGSDDRTGIRAIINSA---------LVSYERLPMLEIVFD 98 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R R L N + ++++ I + ++ ++P+P L + + L GL+ Sbjct: 99 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPGILAVFRAEELDNYGLLTVD 158 Query: 120 PSLVFIAVDNLFGG-DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +L++ VD L GG G ++EGR +T E+ ++ RM+ + L A++ ++P+ Sbjct: 159 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMIDVVLHDLKSAFEPLHPVSFS 218 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 R E F I N + +++ + G + LP++ +EP+R++L+ + Sbjct: 219 LDRLETNPPFAAIARPANAA-ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGE 277 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVD- 297 D W +L ++ +Q+E+ A + + LS++L + GD L + R Sbjct: 278 KFGRDNIWEGHLATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATSRQPGGAAR 337 Query: 298 -GVPVLTSQYGTLNGQYALRIEHLIN 322 +P+ + G N A+R E ++ Sbjct: 338 RRIPLTRGRMGRRNHSIAVRAEAPVD 363 >UniRef50_A0LT67 Flagellar motor switch protein FliM n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT67_ACIC1 Length = 314 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 5/290 (1%) Query: 32 ESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHE 91 + +PYD ++ R ++ L I E F R F L + L + + A+ Y + Sbjct: 19 SREPKPYDFRRPNKLNRAHVRTLHIAYETFCRQFTTVLTSTLGVFSLVELVAVEQMSYVD 78 Query: 92 FARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQ 151 + +LP PT L LI L PL+GTG++ + VD + GG G + R T E Sbjct: 79 YVESLPTPTFLALISLDPLQGTGILQLPLETAMLCVDRVLGGPGS--AQQPTRLPTDVET 136 Query: 152 RVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL 211 ++ + + A++ A++ + + + + E +F P+DIVV +++G+ Sbjct: 137 EIMKMVTRRAVQELRYAFEGLVQVSPDVIGIETNPQFAQAAV-PSDIVVVASLEIKVGDQ 195 Query: 212 TGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLR 271 G + +PF+ + P+ E +P + R+ + + L +++ ++E+ F ++L Sbjct: 196 DGAATLMIPFTGLYPVLEAAASPKRGDRRDLLERSQAALRARLEDVEIEVAVQFPYVALT 255 Query: 272 LSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 ++L L+ GDVL + P ++ +G+P + G+ Q A + Sbjct: 256 PHELLNLSVGDVLSLRHPTNAPLLITAEGIPFAYAVPGSNGRQAACLVVE 305 >UniRef50_B0P9Y0 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9Y0_9FIRM Length = 329 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 152/319 (47%), Gaps = 19/319 (5%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + LSQA+IDALL S + +V + I+ YD + ++ +E+L+A++ ++E Sbjct: 1 MPEQ-LSQAQIDALLKKMSSGE----VAVEEKQTIKEYDFKSPKKFTKEQLKAMDGLHET 55 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKP-----LRGTGL 115 F+R L +LR D+ V I + Y+E+ LP + ++ + P GT + Sbjct: 56 FSRLLSSYLSGILRIGCDVQVLQIDEERYYEYNNALPDTALIGIVGMDPEGEDYSEGTMI 115 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + S ++ F VD L GG G R++T E +I+ + K + D+WK + Sbjct: 116 IDVSTTMGFYLVDRLLGGSGDDFNFT--RDYTEIEMAIIHTIFKEIVGKLEDSWKNSIEV 173 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 ++ E + I +P D V+ +++ G L +IC+P +E + + Sbjct: 174 KMTLDSIETNSRLLQI-FAPEDTVIIVVINIKAGKLNATMSICMPADNMEEIIDKFSMKY 232 Query: 236 LENSRNEDQN----WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--P 289 +++R D ++ L+R V + L + A F + L IL+L P D++P+ K Sbjct: 233 SKSNRRTDPEKEQMRKEVLLRGVCDTDLPIKATFDQFKMDLKDILQLQPSDIIPLNKKIT 292 Query: 290 DRIIAHVDGVPVLTSQYGT 308 D I +DG+P T++ G Sbjct: 293 DDIQVTLDGLPWFTAKLGE 311 >UniRef50_Q1Q6R4 Similar to flagellar motor switch n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6R4_9BACT Length = 318 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 131/324 (40%), Gaps = 12/324 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGE--SDIRPYDPNTQRRVVRERLQALEIIN 58 M D+ILS E+DALLN + + + ++ YD R RE+ + L+ I+ Sbjct: 1 MSDAILSNEEVDALLNAIESGQVLVGEQIEQKVVKKVQHYDFRRPDRFPREQKRQLQKIS 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E A + + +R + + + AI Y F + +++ L P RG G + Sbjct: 61 ENMAVNMGLTFSQYVRTTVGVELIAIEEFSYELFLNSFTDLVCASVVDLTPYRGKGCLTL 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +D GG G+ K+ R T E+ V++++L L W + +E + Sbjct: 121 DAGFCLAMIDRGLGGPGKIQQKI--RPLTIIEESVVSQVLSNVLHSMCLCWNDVAEIEWQ 178 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +++M ++ + + + ++ F + TG CLP + +E + + L Sbjct: 179 IAKTDMDLRSLQVAHN-TESMIAINFAISGELGTGTLVFCLPVATLEAVMGKITEATLN- 236 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 + + + + L + L ++++ L GDV+ ++ D + + Sbjct: 237 ----REEEIVIIKQTLNQVPLLVNTILGTTQLSFNELINLRVGDVISLDNKITDHLSLEI 292 Query: 297 DGVPVLTSQYGTLNGQYALRIEHL 320 D VP G + A++I + Sbjct: 293 DEVPKFFGTPGVSGKKLAIKITSV 316 >UniRef50_Q1YV70 Flagellar motor switch protein FliM n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV70_9GAMM Length = 330 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 174/330 (52%), Gaps = 7/330 (2%) Query: 1 MGD--SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D ++LS E+DAL G + E ++ E +D + + + A+++IN Sbjct: 1 MADINNLLSPEELDALTAGLQDGSIEADTGLNSEVKAMRHDLTNEDSSLGVNIGAVDMIN 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 ERF R FR+GL +LR +P + +G ++I + E+ R+L P ++N I L PLRG + V Sbjct: 61 ERFIRQFRLGLLEVLRTTPKVGMGDVKIMKFGEYLRDLSAPLSVNTIRLNPLRGYSMAVI 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKV-EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 PS+VF A+DN FGG GR K+ GR FT TE +I ML + +AW I + Sbjct: 121 EPSIVFAALDNFFGGFGRGFDKLPPGRLFTPTETSIIKIMLDVLFGSLKEAWAPILAINC 180 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRELLVNPPL 236 E+V SE+ +F I ND+VV + F ++G N++G ++ P++ ++P+R+LL + Sbjct: 181 EHVNSEINPQFAQIADE-NDLVVVSRFGADLGRNISGNIDLVYPYNSLKPIRDLLRSRVQ 239 Query: 237 ENSRNE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIA 294 ++ D+ W L ++LE+ +I LS+ ++ GD++ K + Sbjct: 240 TGDGDDISDKEWSAELQSAAVDAELEVTVELGEIETTLSKFEAMSEGDIVYFSKSEHARV 299 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 +V+ VPV + G Q A RI + P+ Sbjct: 300 YVNSVPVFDADVGANGSQMAARIIKPLAPL 329 >UniRef50_Q1JZS7 Flagellar motor switch protein FliM n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZS7_DESAC Length = 329 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 74/328 (22%), Positives = 144/328 (43%), Gaps = 11/328 (3%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGE------SDIRPYDPNTQRRVVRERLQALEI 56 + ILS+ EI LL+ + + S E + + + RL +I Sbjct: 2 ERILSKDEIAELLSAVKDGTLDAELESSDEDYSPEPRAVSSFSLVQSKGQATMRLANFDI 61 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 + + FAR+ L N L+R+ + +I Y ++ L PL+ GL+ Sbjct: 62 LLDGFARNLSFSLSNRLQRAVSVLRESISSMEYETLIHECSNHELYGILSLDPLKKNGLL 121 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 +F S+ F V+ + GG + R T E ++ +++ + + A+ I LE Sbjct: 122 IFDSSISFAQVEIMLGGVAEHSGDLPQRGMTTIETNILKEVIRESCLELNKAFSPIEGLE 181 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + VR E + I + +++V F V+I ++G + +P+S ++P+RE L + Sbjct: 182 SDLVRVESNPRLVTIVPADTEMMVAA-FRVKINEISGLLRLVIPYSSLDPIREKLKSEL- 239 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIA 294 + WR +L +V+ + + A A I+L + +IL L GD+L ++ + Sbjct: 240 -GASGPGGQWRSHLAHEVEDMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPVSV 298 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLIN 322 V+G + G +G+ A+R+ ++ Sbjct: 299 MVEGKGKFSGLAGLRDGKKAVRVLERLH 326 >UniRef50_A6Q2L2 Flagellar motor switch protein FliM n=4 Tax=Bacteria RepID=A6Q2L2_NITSB Length = 326 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 9/322 (2%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M + LSQ EIDALL GD ++E + + SDIRP+D + + + LE+I E Sbjct: 1 MSEQDFLSQEEIDALLGGDGSEQEEESGTEEL-SDIRPFDFDELESIKKGGFPGLELIYE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R+ + FR + +L + ++ +I I ++ F N+P+P++ ++PL+ T L+V Sbjct: 60 RWVKLFREEVRKVLPKINMVSKESIYITRFNNFMFNIPMPSSYTTFTMRPLKETALLVID 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LVF + +FGG + P KVEGREFT E VI + +ALE + + A+ P++VE Sbjct: 120 SRLVFTVISVMFGGPAK-PFKVEGREFTKLETYVIKDFIDIALESLQEVFSAVYPVDVEK 178 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E+ I TS N+ V+ + V+I C P M P++E++ + Sbjct: 179 RSIELNPALARI-TSGNEKVIISECIVDIDGFEAPIYFCFPHGMFLPIKEIIYSEFQG-- 235 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD--VLPIEKPDRIIAHVD 297 D W+ + + + +E+ + + +L+ G +L IEK + + Sbjct: 236 -EIDPVWKRRVNEILLQTNVEVALELPKQTYLMRDVLQWKEGMELILDIEKEEDAYLRIS 294 Query: 298 GVPVLTSQYGTLNGQYALRIEH 319 + G + +YA +++ Sbjct: 295 DKYKFRCKVGKIKEKYAALLKN 316 >UniRef50_B9KJD8 Flagellar switch protein n=8 Tax=Rhodobacterales RepID=B9KJD8_RHOSK Length = 323 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 143/316 (45%), Gaps = 5/316 (1%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS E+ AL+ E + + S+ ++RPY AL IINERF R Sbjct: 8 LSSKEVAALVGNLMEASE--STSLENGLEVRPYAFGENELNQLGDYHALRIINERFCRTA 65 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R +LR P I+ ++ + ++ + ++ ++ LRG ++V P + + Sbjct: 66 RDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVIPPPFISL 125 Query: 126 AVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQ 185 D+ +GG R EFT TE+RVI + AW+ + L V E Sbjct: 126 LTDSYYGGQIR-HVPTTRTEFTATEERVIELVTDRLNVALQVAWRDLMALTFTVVSREES 184 Query: 186 VKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244 ++F + D+VVN F V++ N F+I P ++P+ L + + ++D+ Sbjct: 185 MQFASFVDG-EDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQLRSRMQSDFVDDDR 243 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTS 304 +WR+ L R + L L A + + L Q++++ PGDVLP+ + + V+G P+ + Sbjct: 244 SWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTEAVSLLVEGQPIFEA 303 Query: 305 QYGTLNGQYALRIEHL 320 G GQ AL + Sbjct: 304 APGERGGQAALNLTRR 319 >UniRef50_A6DWS9 Flagellar switch protein FliM n=1 Tax=Roseovarius sp. TM1035 RepID=A6DWS9_9RHOB Length = 325 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 78/320 (24%), Positives = 139/320 (43%), Gaps = 8/320 (2%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS E+ AL++G +++ E T G ++ Y + + L ++NERF R Sbjct: 12 LSSNEVAALVDGLLDMEKEQT---HGTESVKRYKFGSDNLSIMGDYHGLRMVNERFCRLA 68 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R LR P I+ ++ + + L +L + LR L++ P+ V + Sbjct: 69 RPVFLPFLRMHPRISAFPPEVKSFSHYCDELENFVSLTTARVDALRSNQLIMLPPNFVSL 128 Query: 126 AVDNLFGGDGRFPTKVEGR-EFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184 + +GG+ + GR EFT +E RVI + K AW+ + PL+ E Sbjct: 129 LTNAYYGGNIAYLPG--GRAEFTASETRVIEIVTKGIYRALEAAWRDLIPLDFANPVHED 186 Query: 185 QVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPLENSRNED 243 ++F S + VV F +++ ++ P ++P+ L + + +D Sbjct: 187 NLQFATFVES-EEKVVCCSFIIQLPEADPATLDLIYPLQALKPIAARLRSRMQSDQVADD 245 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLT 303 WR L V L + A A+ ++ +S + L PG V+P++ R V+G P+ Sbjct: 246 LRWRSRLREAVMAVPLNVTARLAEPNVPISALTGLRPGRVVPVDLTLRPQLLVEGTPLFD 305 Query: 304 SQYGTLNGQYALRIEHLINP 323 ++ G NG+ AL + I P Sbjct: 306 AEPGAQNGRAALSLTRRIEP 325 >UniRef50_Q4JMS1 Predicted flagellar motor switch protein n=2 Tax=Bacteria RepID=Q4JMS1_9BACT Length = 321 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 145/318 (45%), Gaps = 4/318 (1%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS E++AL++G + P+ + G+ ++RP+ + + AL IINERFAR Sbjct: 7 LSSDEVNALIDGLGAETNAPSGIMDGD-EVRPFQFGSDDLSLLGDYHALRIINERFARLA 65 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R +LR P I+ ++ + E+ + +LN+ ++ LRG L V +P+ + + Sbjct: 66 RSVFLPMLRIQPRISSFPPEVKTFDEYTAGIENFMSLNISRIEELRGNMLSVMTPNFISV 125 Query: 126 AVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQ 185 ++ +GG + EFT TE+R+I + E AW+ + P+++ Y E+ Sbjct: 126 LTNSYYGGK-ITALPSKKSEFTATEERIIELVTDGLNETLQVAWRDLMPIKITYQNREIN 184 Query: 186 VKFTNITTSPNDIVVNTPFHVEIGNLTG-EFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244 +F + + V+ F V++ + F+I P ++P+ L + + ++ Sbjct: 185 PQFASFVDGA-EFVIICSFVVQLPDTDAASFDIIYPLQTLKPIAAQLRSRLQADVAEDNH 243 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTS 304 WR+ + R V + L + A + + ++ + GD PI + + +D Sbjct: 244 TWREKMERAVLNIPLPVTARLGQPVVSMYNLINMQVGDTFPITIGEGVEVRIDTEDAFIG 303 Query: 305 QYGTLNGQYALRIEHLIN 322 G + G A+ ++ + Sbjct: 304 DLGDVGGNAAVNLKSRLK 321 >UniRef50_A5FX59 Flagellar motor switch protein FliM n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FX59_ACICJ Length = 337 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 136/323 (42%), Gaps = 11/323 (3%) Query: 6 LSQAEIDALLNGDSEVKD---EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 L+Q EID++L+G ++D +P E+ Y R ERL E++ ER + Sbjct: 16 LAQEEIDSILSGGGALEDDALQPEPEAEQEASRLLYG----RADSYERLPMAEVVFERLS 71 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R L NL + + ++ + + + + + L + + GL+ Sbjct: 72 RILAGSLRNLFQDNVEVRLTRLASRRLADSFAEIAPMALLGVFRAREWDNLGLIHVDAMT 131 Query: 123 VFIAVDNLFGGDG-RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 V + L GG T + T + + R++++ L +++ I + ++ R Sbjct: 132 VSNLTEILLGGRRVAAATGQLPKPVTSISRNLTERLIRVVLHDLRNSFAPICDVTFDFER 191 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 +E +F I + + + + +I LPF+ +EP+RELL+ + Sbjct: 192 TETDPRFATIGRNSG-VALTARLSLHSAGRNCMIDIILPFATLEPVRELLLQQFMGEKFG 250 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGV 299 D W +L ++ H+ +EL A + +++L ++ L GD++PI P + V Sbjct: 251 RDSIWESHLAEELWHTDIELEAVLDEQTMKLGAVMDLRVGDIIPINAPRGSDVTLRCGSV 310 Query: 300 PVLTSQYGTLNGQYALRIEHLIN 322 + + G +G+ A I I+ Sbjct: 311 DLFAGRLGVRHGRLAAEIRGWIS 333 >UniRef50_A0LDL0 Flagellar motor switch protein FliM n=4 Tax=cellular organisms RepID=A0LDL0_MAGSM Length = 332 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 144/334 (43%), Gaps = 15/334 (4%) Query: 1 MGDSILSQAEIDALLNGDSEV-------KDEPTASVSGESDIRPYDPNTQRRVVRERLQA 53 M ILS EIDAL+ G E ++ ++ E P+ + + L Sbjct: 1 MS-QILSTDEIDALMMGLEEGTIDLDEIDEDMPSASKDEKKTTPFTFGQKTAIRVGALPG 59 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 L++INE A L + R + Q + F + P +N++ ++P + Sbjct: 60 LDLINEHLASQLSFKLTQKVGREVHVQPKTTTNQVFGRFLHTVEPPIFINILRVEPSQSM 119 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 L+ +++ ++ FGG G ++ R F+ E +VI+R++ +A E +WK ++ Sbjct: 120 ALISIDGDVMYTVLEGFFGGPGD--SERPFRNFSPFEMKVIDRIMDVAREQIELSWKKLD 177 Query: 174 P-LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV 232 P + R E Q +F + ++ V F VE+G+ G IC P ++E ++ L Sbjct: 178 PSFRLVLARWENQPQFAAV-MPLDETVFLITFSVEVGDAEGNITICFPAVILELFKQQLK 236 Query: 233 NPPLENSRNED-QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD--VLPIEKP 289 + E W D L ++ ++++ + + + Q+L L GD +L + Sbjct: 237 QGFQQKEEVEGASAWMDALKNELSLVRVDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMS 296 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 + + + G+ G ++G+ A+RI + P Sbjct: 297 EEMAVQIGGMDKFMCHAGVVDGKRAIRITRTVQP 330 >UniRef50_A5V6A6 Flagellar motor switch protein FliM n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V6A6_SPHWW Length = 331 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 147/326 (45%), Gaps = 7/326 (2%) Query: 6 LSQAEIDALLNGDSEVKDEPT----ASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 LS E+ AL++ S++ + V D+ PY ++ L LE +NER Sbjct: 8 LSGDEVAALMDELSDISFDQEGVEPPKVRQVRDVEPYALGQRKDRPVAHLAHLERMNERI 67 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR R + + + + + + + E+ RN +L+L ++P++G +V PS Sbjct: 68 ARRLRDVIEPIAQTRSKVDPIPLETRRFDEWQRNQADHMSLSLFRVRPVKGMMMVAVEPS 127 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 V VD +GG G T +G EFT +EQR+ R+ +E + W PL+ ++ Sbjct: 128 FVTNMVDAFYGGTGNGLT-TKGGEFTPSEQRLQRRLTDAIVEVLTRVWSDTFPLQFDFST 186 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 E F N+ + ++ VV F ++ G + + I P S+++P+ + + + Sbjct: 187 HETNAAFANMVRA-DEPVVVQSFTIKPGMSRSTRVEILYPLSLLQPIEDQIAARTQAGAD 245 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 +D W+ L+ + L + + A + ++Q+L L PGDV+P+ + V Sbjct: 246 GDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDVIPVNLSQTVPLLVGNRR 305 Query: 301 VLTSQYGTLNGQYALRIEHLINPILN 326 G +G+ AL IE L +L Sbjct: 306 FAEGTIGEQDGRAALMIESLNKEVLK 331 >UniRef50_D2S983 Flagellar motor switch protein FliM n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S983_9ACTO Length = 321 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 6/291 (2%) Query: 30 SGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPY 89 S + R YD ++ RE ++ L+I E FAR L +LR + + I Y Sbjct: 18 SRRGEPRTYDFRRPTKLSREHVRVLQIAQEAFARQTTTVLTTMLRAGARLELLGIEQHSY 77 Query: 90 HEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHT 149 ++ +LP P L ++PL G G++ + + AVD++ GG G R T Sbjct: 78 DDYVASLPDPCFLATFTIEPLAGKGVLAYPLDIAMAAVDHMLGGSGS--ADQPDRPMTVM 135 Query: 150 EQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG 209 E + N +L L + ++ I L+ E E + S +D V+ + + IG Sbjct: 136 ETAITNHLLGRLLSELAGSFSHIIELQPELSEIEYNPQLAQ-AASGSDTVMVASYTIGIG 194 Query: 210 NLTGEFNICLPFSMIE-PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADI 268 + +GE + LPFS + PL E+++ + + + L ++ +++ FA + Sbjct: 195 SRSGEATLVLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLTQVPVDVGVRFAPL 254 Query: 269 SLRLSQILKLNPGDVLPIEKPDRIIAHV--DGVPVLTSQYGTLNGQYALRI 317 + +L L GDVL + P V + V + + A I Sbjct: 255 EVSSEDLLSLAVGDVLLLRHPQDAPLEVTTNEVTFAYAIASNHRRRLAAAI 305 >UniRef50_B1ZR35 Flagellar motor switch protein FliM n=3 Tax=Verrucomicrobia RepID=B1ZR35_OPITP Length = 351 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 139/341 (40%), Gaps = 20/341 (5%) Query: 1 MGDS-------ILSQAEIDALLNGDSEV--------KDEPTASVSGESDIRPYDPNTQRR 45 M D IL Q+EID LL + V + E + + PYD Sbjct: 1 MADDPSNSTGSILDQSEIDKLLAQEMAVAPPKQFLLRPEGARGPTPVLKVEPYDFRNPVF 60 Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + L+ L +++E F R+ L LR + + + Y +F +LP PT+L L Sbjct: 61 LSEVELRRLRLLHEDFIRYLAARLSLYLRMELGLKMAKLTTATYAKFTDSLPSPTHLCLF 120 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 ++PL G G++ +P L D L GG G + R T E ++ ++ + LE + Sbjct: 121 KVEPLIGVGILDINPRLALTIADRLLGGRG--HSVKAERYLTEIEIALLEDVVNIVLEEW 178 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 WK L + + E +F T+ + IV+ G+ + + I +P+ IE Sbjct: 179 CTQWKTEQELRPQIIGHENNGRFLQ-TSPKDAIVLILTLEANFGDCSEQIQIGVPYYTIE 237 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 P+ + + +++ + +H ++ + A ++ + + L +++ L GDV Sbjct: 238 PVVKKMQARRQKDTAVSTTAKKAEWQAAYEHIKVPVRAEWSAMDISLREVVSLRVGDVFE 297 Query: 286 IEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 + ++ VP G + + A+++ P Sbjct: 298 LPASIFHETRVLLNNVPKFVGTVGLDSDRVAVQLTRKTVPG 338 >UniRef50_B9L5A2 Flagellar motor switch protein FliM n=2 Tax=Thermomicrobia (class) RepID=B9L5A2_THERP Length = 334 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 123/322 (38%), Gaps = 12/322 (3%) Query: 17 GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRS 76 S + A+ PYD + ++ +++++ I+E F R L +R + Sbjct: 2 SLSRTRPTTRAARRERGKPIPYDFRRPDKFSKDHIRSIQSIHEAFDRFASNYLSAQVRSA 61 Query: 77 PDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGR 136 +G I ++ LP L + L+PL G ++ + VD + GG G Sbjct: 62 VHCELGPIEQTTLGDYLDRLPSQVVLCIAELEPLVGRIVLEIDFATASRLVDRMLGGAGE 121 Query: 137 FPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPN 196 T E ++ + + AW+ + L+ + + + P+ Sbjct: 122 ERPPFTATTITEIELLLLRELGNGLFGELAAAWEQVIRLQPQPCEVVLSGQQIQ-GMMPS 180 Query: 197 DIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN--SRNEDQNWRDNLVRQV 254 +IV+ V + G F + LP S +EP+ L L R +L+ Q+ Sbjct: 181 EIVLLVQHQVRLFESEGTFTVVLPASTLEPVLPRLNARVLFANPRRATSPQVIADLMAQL 240 Query: 255 QHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQ 312 + L+L L + ++L L PGDVL +++ + +V+ P + G Sbjct: 241 EEVSLQLRVELGRARLTVRELLALEPGDVLVLDQDVSFPLAVYVENEPCFYAFPGQRGRS 300 Query: 313 YALRIEHLINPILNSLNEEQPK 334 A+RI +L E+ P+ Sbjct: 301 LAIRIA-------GTLTEDWPR 315 >UniRef50_C2KZ05 Flagellar motor switch protein FliM n=1 Tax=Oribacterium sinus F0268 RepID=C2KZ05_9FIRM Length = 395 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 68/344 (19%), Positives = 132/344 (38%), Gaps = 25/344 (7%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDI---------------RPYDPNTQRR 45 M D +LSQ++IDALL + + +++ YD + R+ Sbjct: 1 MAD-VLSQSQIDALLKSMQDGPPKEEKVEEKPAEVLETKKEEVQKEEETYSKYDFYSPRK 59 Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 +++++ L I + +AR + + R DITV +R Y+E+ + ++ Sbjct: 60 FTKDKIRLLRSIFDNYARILTSQVNGIFRTMTDITVLELRETRYYEYVNAFHENDCMTIV 119 Query: 106 HLKPLRG-----TGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL 160 + SP L V ++ GG E +T E + R+++ Sbjct: 120 DTYVQDKGKSNVPMMSYISPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEY 179 Query: 161 ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGE-FNICL 219 + D + E + + E ++ VV +V+I L E ICL Sbjct: 180 IVHALGDGFSNYISAEFKIAKIETNPSMVQ-EVGLDETVVLAVMNVDISGLAMERIRICL 238 Query: 220 PFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLN 279 P +++E + +++ N +N +D ++ ++ S + + L + + L Sbjct: 239 PGTLLEHMFKIIDNRKHLARGFAYENNQDTIMEHLKASSFPMTGQLGVVKLDIEDLYHLK 298 Query: 280 PGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 GDV+ + K + +V P T + G A+RIE I Sbjct: 299 VGDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRI 342 >UniRef50_Q01VK1 Flagellar motor switch protein FliM n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VK1_SOLUE Length = 293 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 131/269 (48%), Gaps = 4/269 (1%) Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 ++A+ ++++ F R+ L LR + + ++ Y EF LP PT + + L P Sbjct: 1 MRAIHLLHDTFVRNLVSSLSAYLRSYLTVNLVSVEQLSYAEFLDGLPSPTCIVSLGLSPY 60 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK 170 G G++ +PSLVF ++ L GG G+ ++ R+ T EQR+++ + ++ L+ +AWK Sbjct: 61 DGNGVLELNPSLVFPILEMLLGGTGKSSATIQ-RDITEIEQRLLDGLFRIILQDLREAWK 119 Query: 171 AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 230 A+ ++ E + + ++ +PN+ VV+ V IG G NI +P +I+ +R+ Sbjct: 120 AVTNVDFTIESMETEPQLLHLL-APNEAVVSIGIEVRIGETVGMMNIAMPSIVIKMMRQK 178 Query: 231 LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD 290 + + + ++R ++ + L + A +L + +L L G++L + P Sbjct: 179 FDQQWSVRKTHASEAEQFRVLRVLRQATLTVEALMEGPTLSVGDLLSLREGNLLTFDFPV 238 Query: 291 --RIIAHVDGVPVLTSQYGTLNGQYALRI 317 I V+G T Q + + A +I Sbjct: 239 ERPIELVVNGACKFTGQVVSTGRKRACQI 267 >UniRef50_A9W0F0 Flagellar motor switch protein FliM n=7 Tax=Alphaproteobacteria RepID=A9W0F0_METEP Length = 344 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 3/280 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + +RL L ++ +R A +L + ++ + + EF + + Sbjct: 56 LSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLDAYDANAVVGIF 115 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 G LV ++ V+ LFG DG P + R F+ E R+ + + + Sbjct: 116 QAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIAQMVFEQVGKAL 175 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 ++ ++ R E +++F I N V F ++ N GE + +P +++ Sbjct: 176 ESSFGLVSQTAFRLERMETRMEFAVIGRRSNKAV-QAKFLLQALNRGGEMFLIIPQTVLN 234 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 PLR L S D W + + +VQ + + L A + L L +I L G VL Sbjct: 235 PLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLT 294 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 ++ RI + P+ + G G Y LR+E INP Sbjct: 295 LDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 334 >UniRef50_C0C1P2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1P2_9CLOT Length = 336 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 147/332 (44%), Gaps = 11/332 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGES-DIRPYDPNTQRRVVRERLQALEIINE 59 M + +LSQ++IDALLN + + YD + ++ +++L+ L+ I + Sbjct: 1 MAE-VLSQSQIDALLNSMMNSDAAEEPKEEKPEKNWKKYDFKSPKKFTKDKLKLLKGIYD 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK-PLRGT---GL 115 + R L +LR + ++ V ++ Q Y EF+ L + +++LK P + Sbjct: 60 NYGRLASSRLNGVLRTACEMEVLSVEEQRYFEFSNILSENDVMMMLNLKLPDESKNPPMM 119 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + S L+ +D + GG G ++ E + +++K L+ DAW + Sbjct: 120 IHISQKLMVNMIDRMLGGTGDDDDVDSSYTYSEIESALYKKVMKYLLDITRDAWGNYIKI 179 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + R E S ++ V +V++ N+ G IC+P +++ + ++ Sbjct: 180 NLGDQRLEENPGLFQ-EISLDEPVAIVLLNVKMQNIDGRITICIPGNLLMNIFNIIDKRK 238 Query: 236 LENSRNED--QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DR 291 + ++ N R+ ++ ++ S +E+ A A+ L + ++ L GDV+ + K Sbjct: 239 HVDGLYDEGIANSRELIMTRLNRSTMEIKAELAEAQLSMKEVCGLKVGDVIDLNKSRESD 298 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 ++ +V+ P + G N A++I+ I Sbjct: 299 VVLYVEEQPWFRGKLGAHNKNAAVKIKQCIQE 330 >UniRef50_Q1IR62 Flagellar motor switch protein FliM n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR62_ACIBL Length = 329 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 132/323 (40%), Gaps = 7/323 (2%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASV-SGESDIRPYDPNTQRRVVRERLQALEIINERF 61 D +L+Q EIDA+ ++ + S + P++ ++ RE+++++ ++E F Sbjct: 2 DKLLNQEEIDAIFRAVRTGENAGSGSEGERGRKVEPWNYRQAGQINREQVRSISSLHEGF 61 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR+ L LR + + ++ Y E LP + + G + S Sbjct: 62 ARNLTHSLGAYLRVPFEANLVSVEQLTYRELLGRLPEVAYYSTFRIGTADNIGAMEMDLS 121 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L F +D L GG G +V RE T E++++ + K+ + AW+ + +E + Sbjct: 122 LAFPMIDILLGGQGGHDEQV--REITEIEEQILEVVAKVVCKELETAWQPLG-MEFAFEA 178 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 + + P + ++ F +E+ G N+ + L L ++ Sbjct: 179 RQQAAQL-QRLMPPTEKILALCFELEMPGCRGSLNLAFSAVVSNALLRKLSKDWGYRRQS 237 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGV 299 + + L R++ + D S+R+ ++L+L GD+LP+++ I V G Sbjct: 238 RESDGDGKLHRKLLGCPFPVSLGLVDASVRVRELLQLRAGDILPLKRSAESAIELSVGGR 297 Query: 300 PVLTSQYGTLNGQYALRIEHLIN 322 ++ A +I I+ Sbjct: 298 ASFRARPVRSGNWRAAQILGRIS 320 >UniRef50_A1SEN6 Flagellar motor switch protein FliM n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN6_NOCSJ Length = 335 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 115/286 (40%), Gaps = 7/286 (2%) Query: 36 RPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARN 95 +PYD ++ RE + L++ + F R + LR +++ +I + Y E+ + Sbjct: 45 QPYDFRRPIQLSREHSRMLQLAFDDFCRQATTVFTSSLRTVCGVSLASIEQRTYAEYIDS 104 Query: 96 LPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIN 155 L T L +PL G+ V VD++ GG GR + R T E V + Sbjct: 105 LDASTYLTSFSAEPLFDRGVFEIPLLAVMTCVDHMLGGPGRL--EQPERPLTEIEAGVAS 162 Query: 156 RMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEF 215 M++ L + +I E E +F + + +D++V + I + T Sbjct: 163 GMIERLLGELRYSMASIVAFEPVVKGVEYSPQFVQVAGA-SDVMVAASLELRINDRTFRM 221 Query: 216 NICLPFSMIEP--LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLS 273 +C+PFS + P LR P E R + L Q Q +E+ + +L Sbjct: 222 TMCMPFSSLLPHLLRAAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSPM 281 Query: 274 QILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRI 317 ++ L PGD L + P + VDG + GT + A I Sbjct: 282 ELAALRPGDALRLRHPAAAPLEVVVDGTCFAHATPGTSGFRLAALI 327 >UniRef50_C5EFH3 Flagellar motor switch protein FliM n=3 Tax=Clostridiales RepID=C5EFH3_9FIRM Length = 296 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 127/296 (42%), Gaps = 14/296 (4%) Query: 35 IRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 I+ YD + ++ +ER+ +E + + FAR L LL+ +I++ I + Y EF+ Sbjct: 2 IKSYDFKSPKKFTKERMSTVENLYDSFARALAPYLTGLLQSYCEISINGIVEKRYQEFSN 61 Query: 95 NLPVPTNLNLIHLKPL-----RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHT 149 ++P + +I L P + L F ++ L GG G R+FT Sbjct: 62 SVPDHSLFGMITLSPANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYELT--RDFTDI 119 Query: 150 EQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG 209 E+ ++ +L E +AW ++ + ++ D+V+ V I Sbjct: 120 EKAILQYVLGKITEFLGEAWGQYLDVQASLTGLQTNPHLLQMSAQ-EDVVIQVELEVVID 178 Query: 210 NLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDN----LVRQVQHSQLELVANF 265 L+ N+ +P +E L + + +D+ + + + + + S++EL A Sbjct: 179 KLSARLNMVMPAPNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLESEVELRAIL 238 Query: 266 ADISLRLSQILKLNPGDVLPIEKPDR--IIAHVDGVPVLTSQYGTLNGQYALRIEH 319 + +L IL+L PGDV+P+ K I +V+ V ++ G + A+ I + Sbjct: 239 HEFTLDAQDILQLTPGDVIPLNKKVDSGISIYVEDVACFEAKAGHTRLRKAVEISN 294 >UniRef50_B9IWG1 Flagellar motor switch protein FliM n=70 Tax=Bacillales RepID=B9IWG1_BACCQ Length = 328 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 133/330 (40%), Gaps = 10/330 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPT--ASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M LSQ +IDALL +E ++ P + + YD N + E L++L+ I Sbjct: 1 MSGDKLSQEQIDALLKAVNEGEEMPAFAQEAGKQDKFQEYDFNRPEKFGVEHLRSLQAIA 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPY-HEFARNLPVPTNLNLIHLKPLR--GTGL 115 F + L +R D+ + P+ E+ +P L + L G + Sbjct: 61 STFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIV 120 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + + V + GGD + + R T E ++ + L + +++++ + Sbjct: 121 IEIDLAFVIYIHECWLGGDSKRNFTM-RRPLTAFEFLTLDNIFALLCKNLEQSFESVVAI 179 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP- 234 + +V +E ITT+ +DI+ +++ I +PF +E + + L + Sbjct: 180 KPTFVTTETDPNALKITTA-SDIISLLNVNMKTDFWNTTVRIGIPFLSVEEIMDKLTSEN 238 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRI 292 +E+S ++ + + + +V + + + + +I ++ GD++P+ D + Sbjct: 239 IVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDIIPLHTKVSDEL 298 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + VDG G + AL + + Sbjct: 299 LGFVDGKHKFNCFIGKDGTRKALLFKSFVE 328 >UniRef50_Q0FMH0 Flagellar motor switch protein fliM n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FMH0_9RHOB Length = 313 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 114/280 (40%), Gaps = 4/280 (1%) Query: 45 RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNL 104 ++ RL LE++ +RF+ L + L ++++G I + ++ P P+ +++ Sbjct: 23 KLSYARLPMLEVVFDRFSLSLAQTLKSYLGAMAEVSLGGIDYLSCQDALKDQPDPSLISV 82 Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEG 164 + GT + +P L+F ++ FGG + + R FT E+R+ + L Sbjct: 83 TTAEEWGGTIAAIMTPELLFGIIEITFGGRTVATGEKKTRNFTSIEKRIGQNFTETVLTE 142 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMI 224 S+A+ + P+ + E K + P V ++I GE LP + Sbjct: 143 LSNAFAKVTPVNFDISHLETNPK-ALLLAPPTSACVRARLTIDIEGRIGEMVFVLPNTAF 201 Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 E + +L D WR + + + + + A L + +L PG VL Sbjct: 202 EKVSHILSQQFTGGQLGGDSGWRLKMTDMLGSTNVPMSAVMGQAVLPMRDVLAWAPGQVL 261 Query: 285 PI--EKPDRIIAHVDGVPVLTSQYG-TLNGQYALRIEHLI 321 + + D + G + ++ G NG+ AL++ + Sbjct: 262 DLGIQVDDPVTLCCAGKEIARAEVGHRKNGRIALKLSEKL 301 >UniRef50_C8WBT4 Surface presentation of antigens (SPOA) protein n=3 Tax=Zymomonas mobilis RepID=C8WBT4_ZYMMN Length = 332 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 74/316 (23%), Positives = 136/316 (43%), Gaps = 7/316 (2%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS AE+DALL E + + + R+ LE I E+ AR Sbjct: 17 LSGAEMDALLAELGGDDIEEESPQEKTEFV----FGQETLNPIVRMAGLERIAEKLARRL 72 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R+ + R +TV + I + ++ R+LP +++L L PL+G ++V P + Sbjct: 73 RLIIEPFARARTQVTVDGVDIHHFEKWRRDLPEFVSISLYRLAPLKGGAMIVMDPQFITG 132 Query: 126 AVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQ 185 VD +GG G T +EFT E+R++ R+ + ++W + L+ +++ E Sbjct: 133 LVDAFYGGTG-IVTPSRAKEFTPAEERLLVRLSDTIADSVVESWSDVVQLQSQFLSRETN 191 Query: 186 VKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244 + + + ++ VV F + GN +I P + + P L +++ D+ Sbjct: 192 GAYVTMIRN-DEAVVVQRFTIVPGNGRAARISIVYPRATLRPFEMHLDTKVHDDAGPADE 250 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTS 304 NW + + + A + + Q+ L G+V+PIE P+++ + Sbjct: 251 NWTKRMRLAASAIPIPIKTILARPQITMGQLKNLKVGEVIPIEMPEQLPLIAGTKKIAYG 310 Query: 305 QYGTLNGQYALRIEHL 320 G +G+ AL IE L Sbjct: 311 SIGDRDGKTALLIEKL 326 >UniRef50_C1A553 Flagellar motor switch protein FliM n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A553_GEMAT Length = 331 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 134/329 (40%), Gaps = 12/329 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M LSQ +ID LL G S +A + D++ YD RV +ERL+ LE + ER Sbjct: 1 MTSETLSQTDIDRLLGGASRGNAAASAGL----DVQVYDFRRPHRVSKERLRTLEAMYER 56 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 + F L + +R ++ + ++ + EF +LP+P + + + G++ P Sbjct: 57 LVKGFEAWLISRVRGQIEVRLQSVEQFSFGEFTLSLPMPCSSYIFDIAGTGQKGVIDVGP 116 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 VD LFGG+G R T E+ + + + W+ +++ Sbjct: 117 EFSTYIVDRLFGGEGTGSALT--RALTPIERMAVRNVADKITGLLQEIWQDHVAMDLNIT 174 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE--- 237 E + + D V+ V G+++ +CLPFS+++ L Sbjct: 175 GFESSPEILQVVNR-EDPVLVANVEVNTGSVSSLLLLCLPFSVLDKFFTSNGQQRLALLN 233 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP--IEKPDRIIAH 295 + E + R ++ +++ L A D L + + ++ G V+P I K R++ Sbjct: 234 TNEQEREATRQRSEAALRATKVPLTARLPDFQLSMRDLAQITEGSVIPTAIPKDARVLIR 293 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPI 324 G +NG A+RI + + Sbjct: 294 AGTQERFIGHAGRVNGNLAVRIVDALPSV 322 >UniRef50_Q3A5D9 Flagellar biosynthesis protein, component of motor switch n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5D9_PELCD Length = 331 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 8/327 (2%) Query: 3 DSILSQAEIDALLNGDSEVK-----DEPTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 + ILS+ EI LL+ + + +EP + +I + + +++ +++ Sbjct: 2 ERILSKEEIAELLSAVHDGEIPLRDEEPEPPAEVKREISSLNLVALQGPRHCKIENFDLV 61 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 + ARH + L N ++RS + +++ Y F + L L +I L PLR G+ + Sbjct: 62 LDTLARHLGISLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRLDPLRWRGVFI 121 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 F L F +++L GG + GR T E V+ + A + + + +E Sbjct: 122 FKEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTFAPLEKIES 181 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 V+ E + NI + V+ F V NL E + LP +M++PL+E + Sbjct: 182 SLVKIESSTRLINIVPG-DASVLAAHFVVTGNNLEDEIVLVLPMAMLDPLKEKMREGSAV 240 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAH 295 S ++D+ W+ L ++++ ++L A A ++L + IL GD+L + + Sbjct: 241 FSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQVR 300 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLIN 322 G P + GT G+ A+RI IN Sbjct: 301 AAGQPKFQAIAGTHQGKKAVRISGRIN 327 >UniRef50_B4U6V4 Flagellar motor switch protein FliM n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6V4_HYDS0 Length = 321 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 154/324 (47%), Gaps = 10/324 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + +L Q E+D LL + ++ S+ E +D + R+ + LEII E+ Sbjct: 1 MAEQVLGQEEVDLLLKSLGKEEEVEEKSLEYEK----FDIDDLERISLGTIAGLEIILEK 56 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 ++R R+ L +L+ +I + + + LPVP+ +N+ ++ L+GT ++ P Sbjct: 57 WSRLSRVKLSSLIVAINNIYKAETSLIRFEDLITKLPVPSCINMFNITGLKGTHFLILDP 116 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 +++ V +FGG + P ++EG+EFT E ++I +++ L L + ++W +I EV Y+ Sbjct: 117 RMIYSIVSVIFGGSAK-PYRIEGKEFTKLELKIIKKVVDLLLSAFQESWNSILSGEVMYL 175 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 +E+ S ++ + ++EI + + + S +EP+ + L N + Sbjct: 176 ETEVNPALIAPMNSKKEMFIQAHINIEIDGIDYPIFLAIQNSSLEPVVDRLRNVSEVSDY 235 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDG 298 + + NL++ + + L + IL+ GD + ++ + +++G Sbjct: 236 VDYDSINKNLIKNL---TVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANRPVKVNIEG 292 Query: 299 VPVLTSQYGTLNGQYALRIEHLIN 322 + + G N + A++I L++ Sbjct: 293 MLKMYGVLGRSNSKKAVKILKLLD 316 >UniRef50_B2V6S5 Flagellar motor switch protein FliM n=2 Tax=Sulfurihydrogenibium RepID=B2V6S5_SULSY Length = 322 Score = 227 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 78/328 (23%), Positives = 150/328 (45%), Gaps = 12/328 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D LSQ EIDAL+ G + +A+ + + +D N ++ + Q LE++ E+ Sbjct: 1 MSD-FLSQDEIDALIGGG-----KSSATAEEKIKEKLFDFNRLEKIQKGGFQGLEVLFEK 54 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 + + FR + ++ G I + +F +P+P + + ++KPL+ + L++ Sbjct: 55 WVKIFREEIRTEFPVVNMVSKGKIVTMRFGDFIGKIPLPASYTIFNMKPLKDSSLLIIDS 114 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 +VF V LFGG G P K+EGREFT E R+I +++ + L + WK + P+E+E Sbjct: 115 RVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDVYPIEIERK 173 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 E I S + V+ ++I L P + P++++L + Sbjct: 174 SIEFNPILVRIV-SHAEKVIVAEIMIDIEGLEVPLTFAFPQMLFLPIKDILFTDTFGS-- 230 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDG 298 WR L++++ L+L+ S+ + + L + G + + K + + V+ Sbjct: 231 EVSPEWRKELIKKLLKVNLKLILELDKFSVLVKEFLNYDVGTEIILNKKQSEELDLKVED 290 Query: 299 VPVLTSQYGTLNGQYALRIEHLINPILN 326 + G L+ ++A I +I + Sbjct: 291 KVKFKASLGKLDKKFAAMITKVIKENDD 318 >UniRef50_Q0EZ62 Flagellar motor switch protein FliM n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ62_9PROT Length = 330 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 131/333 (39%), Gaps = 13/333 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKD-----EPTASVSGESDIRPYDPNTQRRVVRERLQALE 55 M + IL+ EI+AL+ + + V + Y N ER Sbjct: 1 MSEPILAPEEIEALMAEVAPAEQTDAMFASLPPVVQPEHVEVYRFNVNDEDSPERYPMFV 60 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 + ER F L +R + V ++ Y + ++ P + G L Sbjct: 61 NLQERLIEMFDEQWHELFKRDVSVQVSSLESLFYKDIV-SVDAPQVYFVFEADGY-GRML 118 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 V F +L+ VD + GGDG + + E R+ R+ + D W+ + PL Sbjct: 119 VSFDTALIVAFVDAMLGGDGD--ADDNPQTLSAVELRLSERIADKISKTLGDLWQPVYPL 176 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNP 234 + + + +F +T + + +T F +++ + L G+ I P S +EP+ ++L Sbjct: 177 DFSLHKLDYDPQFLAVTGA-MEKCFSTFFDIKLNDELNGQMGIYYPRSFLEPMLDVLRVT 235 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRI 292 + S + D W + L++++ + L + + LK+ PGD LPI D Sbjct: 236 VTDESGDTDMEWTNGLMQRLSQTPAALRFELGRCQIDIGAFLKMMPGDFLPISTRANDPC 295 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINPIL 325 +D +P+ + G NG A I + P Sbjct: 296 SLWIDEIPLFQATPGEKNGGLAAEITEPVQPGG 328 >UniRef50_A8UVU1 Flagellar motor switch protein FliM n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVU1_9AQUI Length = 322 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 84/326 (25%), Positives = 161/326 (49%), Gaps = 15/326 (4%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M + LSQ EID LL + ++E V +P+D N R+ RL LE + Sbjct: 1 MAEEDFLSQDEIDMLLQSLGKEEEEAEEEV----KYKPFDINELERISPTRLIKLEQVIN 56 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R+ L ++ +I++ I+ + +F +P+P + +++++ L G +V Sbjct: 57 RWIASATAELRGIIFNLDNISLSEIKTEKISDFVLKIPLPAAIAVLNVEALNGRLYMVLD 116 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW-KAINPLEVE 178 L++ + +FGG + P KVEG+ FT EQ++IN ++++ + + AW + I EV+ Sbjct: 117 TRLIYTIISIIFGGPAQ-PYKVEGKSFTKFEQKIINNLVEVLVRHLNTAWVELIREGEVQ 175 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +V E + IT S N+IV+ VEI G + +P I+P++++L Sbjct: 176 FVGIEDNPR-RLITISRNEIVIVITLEVEIEGFKGYVYLAIPMKTIDPIKDILRT----- 229 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHV 296 + E ++RD ++ + + + L A + + + ++L++ GD +P++ D I V Sbjct: 230 ADTESGDFRDVILSNLMGTPVLLEAILPTLVMNVHELLEMKEGDFIPLDPRATDSITVKV 289 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLIN 322 GVP+ G G+ A++I+ + Sbjct: 290 AGVPMFKGILGESAGRKAVKIKSFVE 315 >UniRef50_D1BCL9 Flagellar motor switch protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCL9_SANKS Length = 315 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 8/305 (2%) Query: 21 VKDEPTASVSGESDIRP--YDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPD 78 V+D+ +V + +P YD + RE +A E+ E FAR + L + LR Sbjct: 7 VQDKARPAVRRQRPAQPEAYDFRRPMTLAREHGRAFEMAFETFARQWGTQLTSRLRVMVG 66 Query: 79 ITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP 138 + + + + Y E+ R LP T + L ++ R T ++ + + VD + GG G Sbjct: 67 VGLDGVEMVSYDEYVRRLPNHTTMVLCSIETTRSTAVLQVASETSMLWVDYVLGGPGLVR 126 Query: 139 TKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI 198 ++ RE T E +I ML AL A+ A+ PL+V + +F + ++ Sbjct: 127 EELP-RELTEIETTLITDMLSGALADLRYAFVAVVPLDVRVKAIQYNPQFVQAAPA-SEA 184 Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIE-PLRELL-VNPPLENSRNEDQNWRDNLVRQVQH 256 V+ F + + + +P ++ P+R V ++ E D L R + Sbjct: 185 VIVATFTLTVAERPTTATLMIPADVLLAPMRAGEGVVQRSKDELAEAAAASDRLHRTMST 244 Query: 257 SQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYA 314 +++ +++ ++ L G+V+ + P + VDG+ + G Q A Sbjct: 245 VPVDVHVRMRPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHGVAGNNGRQLA 304 Query: 315 LRIEH 319 +I Sbjct: 305 CKIVD 309 >UniRef50_B2IJZ9 Flagellar motor switch protein FliM n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJZ9_BEII9 Length = 313 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 115/285 (40%), Gaps = 3/285 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 V +R+ L +I +R L TV +I + + T + +I Sbjct: 24 VSIDRMPMLHVIFDRMVAQCSESLRQYSAAPAVFTVSSIGTERIGDILDAYENNTVVAII 83 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 H++ LV F + + ++ +GGDG P +E R ++ E ++ + L + Sbjct: 84 HVQAWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLSNIEIKLAQTIFDLLPKAL 143 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 ++ I+ ++ R E ++ F I N T ++ I GE + +P S + Sbjct: 144 QTSFSTISETVFKFERLETKLDFAVIAPR-NTFGFITRINLRILGRHGEMFVVIPQSSLN 202 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 +R+ L ++ D W + ++ +++E+ A D L +L G VLP Sbjct: 203 SIRQELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIEDSHFVLGDFTELKIGQVLP 262 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 ++ R + P+ Q G +G Y LR+E I+ + + Sbjct: 263 LQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQEKDFI 307 >UniRef50_B6R823 Flagellar motor switch protein FliM n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R823_9RHOB Length = 321 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 124/287 (43%), Gaps = 3/287 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + +RL L ++ +R AR + L + +P + V ++ + + + ++ Sbjct: 32 LGVDRLPMLHVVFDRMARQYIDTLRQMAATAPYLAVQSVSNERIGDALEQYEDRAVVAVL 91 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 H + L+ F + +F V+ L GGDG +E R T+ EQR+ RM + A Sbjct: 92 HAQEWDARILLGFDRTFIFSMVEVLLGGDGEEEPFLEDRSLTNVEQRLAYRMFEEAATAL 151 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 A++AI ++ R E +++F N V EI GE I +P S++ Sbjct: 152 ETAFEAIADTSLKVERLENRMEFAQTGRKSNP-CVLAKMTAEIIGREGEIFIIIPQSVLN 210 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 PLRE L D W ++VQ ++++L A + + L ++ + G VL Sbjct: 211 PLRENLTQVLSGEVAGRDTRWTKQFQQEVQRTEVKLTAILEEQRMTLEEVAQFEVGLVLE 270 Query: 286 IEKPDR--IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 + + + + P+ + G + G Y +R+E LI L++ Sbjct: 271 LNATPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELIEQEGELLDD 317 >UniRef50_C7R0I8 Flagellar motor switch protein FliM n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0I8_JONDD Length = 308 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 117/303 (38%), Gaps = 6/303 (1%) Query: 21 VKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDIT 80 D TA + YD + RE + +E+ E FAR + L + LR I Sbjct: 3 ASDTSTARRHRKGPPERYDFRRPMTIAREHARIVEMACETFARQWATQLTSRLRVMASIE 62 Query: 81 VGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTK 140 + + + Y E+ L T L L R T L+ + + +D L GG G + Sbjct: 63 LDKLEMVTYDEYIATLDPHTTLVLFTADETRSTALLQIPSNTTMLWLDYLLGGPGLERQE 122 Query: 141 VEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVV 200 RE T E + +L +L A+ +I P+ + + +F + ++ V+ Sbjct: 123 -NPRELTEIETALFRSLLDSSLADMRYAFSSITPMNPKIRGLQYNPQFVQAVPA-SEAVL 180 Query: 201 NTPFHVEIGNLTGEFNICLPF-SMIEPLRELLVNPPLENSRNEDQNWR-DNLVRQVQHSQ 258 + + +G+ + +++ PL+ ++ E+Q + L + Sbjct: 181 VANYSLTVGDRVSAATMMFAADALLNPLKVGEGEADPSAAQREEQRVSFERLRLSMNDVP 240 Query: 259 LELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALR 316 +++ F I++R I+ + GDV+ + + V+G + G Q A++ Sbjct: 241 VDVGVRFNSITVRPRDIIDMAVGDVIELRHAASKPLRIVVEGRTIGHGVPGNNGKQLAVK 300 Query: 317 IEH 319 + Sbjct: 301 VTD 303 >UniRef50_C6WJP9 Flagellar motor switch protein FliM n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP9_ACTMD Length = 320 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 124/310 (40%), Gaps = 12/310 (3%) Query: 14 LLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLL 73 LL S V+ D +D ++ RE L+ L++ E F+ L + L Sbjct: 6 LLTSSSGGASRSPGLVANPGDPEVFDFTRPVKLPRELLRVLQLCYETFSHRMATLLTSTL 65 Query: 74 RRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGG 133 R + +I Y E L PT L + L+PL GT L+ + S ++D+L GG Sbjct: 66 RVVCHAELISIEQLSYAEHMAELANPTLLAPVVLEPLPGTALLEMTLSTAMTSMDHLLGG 125 Query: 134 DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITT 193 G R + E ++ +L ALE +++ + E E + T+ Sbjct: 126 KG---GPQPARPLSDIETPLLRDLLDQALEQLRVGMESVADVRPELEGLEYNPQLVQ-TS 181 Query: 194 SPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP----LRELLVNPPLENSRNEDQNWRDN 249 +P D VV F + +G G+ ++C+P I P R+ + + R + R+ Sbjct: 182 TPTDAVVVGYFELNVGEEQGQVSLCIPLQTILPSLRSYRDKVA--VSASERATREAARNA 239 Query: 250 LVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYG 307 + +Q+ + + F + L S ++ L PGDV+P+ + + G + Sbjct: 240 ITAGLQNVPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFANAVAT 299 Query: 308 TLNGQYALRI 317 + A + Sbjct: 300 KRGTRLACLV 309 >UniRef50_B1M7I2 Flagellar motor switch protein FliM n=4 Tax=Alphaproteobacteria RepID=B1M7I2_METRJ Length = 309 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 3/287 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + ERL L +I +R A L + ++ + Q + + + Sbjct: 20 LSLERLPMLHVILDRVATFCADQLRHFAASPVYFSLSNVESQRFGDILEPYESNAIAGIF 79 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 LV F +F V+ L G DG P E R F++ E R+ R+ + Sbjct: 80 QAPEWDSHILVGFDRDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIAQRLFEQVGRAV 139 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 A+ + + R+E+++ F I N+ V F ++ N GE I +P S++ Sbjct: 140 QSAFALVADTPFKLERTELRMDFAVIGRR-NNQAVAAKFLLQALNRGGEMFIVIPQSVLN 198 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 P+R+ L + + D W + +VQ + + L A + L L +I L G VL Sbjct: 199 PMRQSLARILVGETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLE 258 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 + R+ + + G +G LR++H I+ +++ Sbjct: 259 LRATPRSRVKLVGNDRDLFWCDVGQEDGAIVLRVDHFIDQDQEFIDD 305 >UniRef50_A3U1I7 Flagellar motor switch protein FliM n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U1I7_9RHOB Length = 317 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 123/282 (43%), Gaps = 4/282 (1%) Query: 45 RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNL 104 + ERL LE+I ERF+ + + + + ++ AI P + ++P P +++ Sbjct: 27 KRSYERLPILEVILERFSLAVGPAIKHYVGAICESSIDAIDYLPTGDALESMPSPALISV 86 Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEG 164 I G +V PS + ++ FGG ++ R FT E+++ + +L L Sbjct: 87 IESPDWDGPFALVIDPSFLISTLEITFGGRMAGRSEWVPRSFTAIEKKIGTEVTQLMLNE 146 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMI 224 S+ + + +E E + + PN V HV + + G F I +PF+ + Sbjct: 147 LSETFGQLAQIEFTISHIETNAQ-AMVLAPPNTGCVRLRMHVTMDDRDGYFYIVMPFNAL 205 Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 +R +LV P S D++WR N+ + + + + A D + L ++L+ G VL Sbjct: 206 SNIRNMLVQPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVL 265 Query: 285 PI--EKPDRIIAHVDGVPVLTSQYGTL-NGQYALRIEHLINP 323 + E + G + +Q G NG+ AL+I + Sbjct: 266 DLGIEVDQPVSLICSGHEMYMAQTGKRKNGRMALKITEQLKD 307 >UniRef50_A6W8L0 Flagellar motor switch protein FliM n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L0_KINRD Length = 314 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 122/287 (42%), Gaps = 12/287 (4%) Query: 37 PYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL 96 PYD ++ R+ + LEI E F R + L + LR + + + I+ Y E+A +L Sbjct: 25 PYDFRRPTKLSRQHARVLEITYEGFCRQWATLLSSTLRTTVQVELDGIQQYSYDEYAASL 84 Query: 97 PVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINR 156 P+PT + + +PL G ++ + V ++ + GG G R+ T E + Sbjct: 85 PMPTVMAVFDPEPLVGAAVLHMDMAFVLSCIERMLGGTGHNA--QPERQLTDIEAVLARG 142 Query: 157 MLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFN 216 M++ L + + + L+ + + + D+++ + FH+E+ + G Sbjct: 143 MVERTLVELASSLVTVTDLKPKLTAIDQNPA-FAQAAAATDVMIVSSFHLEVDGVAGTAT 201 Query: 217 ICLPFSMIEPLRELLVNPPLENSRNEDQN----WRDNLVRQVQHSQLELVANFADISLRL 272 + +P ++PL L L + E+ RD L ++H +E+ +R Sbjct: 202 LAMP---LDPLSTALTAAELRVASPEELRIRRLMRDRLDDHLEHIPVEVSVRMKAAQMRP 258 Query: 273 SQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 +IL L PGDVL + + + V ++ G+ + A I Sbjct: 259 DEILGLVPGDVLRLPHRADEPLEVVSSDAHVASAVAGSRGAKLACLI 305 >UniRef50_A9DR47 Flagellar motor switch protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DR47_9RHOB Length = 315 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 131/294 (44%), Gaps = 7/294 (2%) Query: 42 TQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN 101 Q R +RL LEII +R L + +P+I + ++ PY + ++ P+ Sbjct: 18 RQARESFQRLPTLEIIIDRLLLALVPDLKSYCTIAPEIELTSLEYMPYEDAMESIQSPSL 77 Query: 102 LNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLA 161 + + + + V P L+F ++ + GG + + R T EQ++ R+ +L+ Sbjct: 78 IAIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLGRRLAELS 137 Query: 162 LEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF 221 L+G + + ++P++ + E + + +P V H++ + +G + LP+ Sbjct: 138 LKGLAQCLQDVSPVQFDIQSLESNPRSV-MLAAPRTATVLVRMHMQFEDRSGHMALVLPY 196 Query: 222 SMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPG 281 ++ + L P L D N R ++ Q+ + + + ++++ L ++L+ G Sbjct: 197 GTLDEVSAQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTG 256 Query: 282 DVLPIEKP--DRIIAHVDGVPVLTSQYG-TLNGQYALRIEHLINPILNSLNEEQ 332 V+ + ++ V+ P+ + +G NG ALR+ I +L +E+ Sbjct: 257 QVIDLGMTVDTPVVGMVNAQPMFQAAFGQRSNGALALRV---IQSLLPKETKEE 307 >UniRef50_B8HEJ5 Surface presentation of antigens (SPOA) protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ5_ARTCA Length = 298 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 122/299 (40%), Gaps = 11/299 (3%) Query: 21 VKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDIT 80 + + + + YD + R+ + LE+ E FAR + L +R T Sbjct: 1 MSELEDRQAPRQRSVDVYDFRRPTTLPRQHSRVLEVAFETFARQWGTQLTAKVRVKSSAT 60 Query: 81 VGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTK 140 + + +Q Y E+A +LP T++ L + ++ F + + + GG G Sbjct: 61 LEQLSMQSYDEYAASLPSVTSMVLCRIDGSESRLVLQFPATAALAWISRMLGGSGD--AD 118 Query: 141 VEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVV 200 V R+FT E ++ RM++ +LE + ++ + + +F +P ++++ Sbjct: 119 VPERKFTQIEHALVRRMVEDSLEDLKYSLGSLLAAPLAMDVVQYNSQFAQ-AAAPGELMI 177 Query: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLE 260 F V++G L + +P ++ P VNP + + QV ++ Sbjct: 178 VATFSVQVGELPSAATLAIPADVLLPGLGA-VNPTAPTADAG-----ALVRAQVAQVPVD 231 Query: 261 LVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRI 317 + A S+ +QIL L GDVLP+ P+ V+G + T+ + A I Sbjct: 232 VAVQLARTSVTPAQILGLAVGDVLPLPHPENSPFDVTVNGTRLATAAPARNGSRAAAVI 290 >UniRef50_Q2CGI2 Possible flagellar motor switch protein FliM n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGI2_9RHOB Length = 316 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 115/282 (40%), Gaps = 5/282 (1%) Query: 42 TQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN 101 + ER+ LE++ +R+ + + D+T+ + LP P+ Sbjct: 21 RLSSLNFERMPMLEVVFDRYVMALASAMKSFSGMPFDVTLRSFDYVTCGTALSGLPAPSL 80 Query: 102 LNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGD-GRFPTKVEGREFTHTEQRVINRMLKL 160 L P G L+ SP L+F ++ + GG GR + R FT E+R R+ ++ Sbjct: 81 SALTTATPWSGNVLMTLSPDLLFSVLEVMLGGREGRGRQLWKPRSFTAIERRFGGRLARM 140 Query: 161 ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLP 220 L+ +S +++ ++ + E E + I S + V + +G G +P Sbjct: 141 ILDEFSQSFRQLSEVSFEIDSLESAPETIAIAPSGSPAV-WVTLDLTVGERGGALYFLIP 199 Query: 221 FSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNP 280 ++ ++ +R +L P L D +WR +L +++ + + L A+ + + + + L Sbjct: 200 YTALDTVRPVLNQPFLGGKIGGDTSWRKDLEEKIEDTTVTLTASLHRLRVPVQEALGWRK 259 Query: 281 GDVLPI--EKPDRIIAHVDGVPVLTSQYGTL-NGQYALRIEH 319 G + + + + Q G GQ ALR+ Sbjct: 260 GQTIDLGISAEQPVDVVCGERRMFRGQMGRRATGQVALRLIE 301 >UniRef50_Q21AD3 Flagellar motor switch protein FliM n=3 Tax=Bradyrhizobiaceae RepID=Q21AD3_RHOPB Length = 311 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 110/286 (38%), Gaps = 3/286 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + ER+ L +I ++ L ++ ++ + + + Sbjct: 22 ISVERMPMLHVIFDQMTNLCAEALRSMSPSQSYFSLSGVGSDRLSDIVDRYEGEAIAAVF 81 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 + + L+ F ++ ++ LFG DG P R F++ E V + + + Sbjct: 82 YAQAWDARVLIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVEMHVAQALFERFGKAL 141 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 ++ + + R E ++ + + N++ V ++ + GE I +P + + Sbjct: 142 QSSFSRASDVNFTLERVETRMDYLAVGR-LNNMAVCANILLQGLDRGGEMFIVIPHAALN 200 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 P+R+ L S + D NW L +++ +++ L A + L ++ + G V+ Sbjct: 201 PIRQALSQIVTGESASTDPNWSRQLHSEIKRTEVVLKAVLEERPFTLGEVAGFHVGQVIK 260 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 + + + + Q G LNG Y+L+++ + ++ Sbjct: 261 LNATPNTMVRLECNNQRLFWCQLGQLNGVYSLQVKESADQKREFID 306 >UniRef50_C1F3H9 Putative flagellar motor switch protein FliM n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3H9_ACIC5 Length = 316 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 135/320 (42%), Gaps = 10/320 (3%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D L+Q +IDAL S A ++++RPY+ + ++ RE+L+++ +N+ FA Sbjct: 2 DKSLAQEQIDALFK--SAKATAQPAQPEADANVRPYNYSRAGQISREQLRSISSLNDLFA 59 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R+ + L L I + + P+ EF + + + L+PLR ++ + Sbjct: 60 RNLGINLGAWLGMQCRIQLVSAEQIPFEEFVMRGADLSFIASLRLEPLRAVAILQMELAP 119 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 V +D L GG G+ E RE T E+ ++ +++L S AW++I L + Sbjct: 120 VPSMIDALLGGIGQPG---EVRELTSIEEAIVAHVVELICRELSSAWQSIG-LSFYFESR 175 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242 +MQ + + + + F + + + +G +I LP + + L + Sbjct: 176 QMQTQMARLLPI-KERALCLSFEIRLPSASGLLHIALPAVVSNTVLRSLRGDLHP-QKEH 233 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL--PIEKPDRIIAHVDGVP 300 + R + V+ + A + + ++ L G V+ P+ R V GVP Sbjct: 234 SEETRAKMRGLVKKVSVGTALQLAPARIPMRELEGLEAGQVVVFPVTAKTRPELLVAGVP 293 Query: 301 VLTSQYGTLNGQYALRIEHL 320 + + + A IE L Sbjct: 294 LFQAVPVRSGERRAAHIESL 313 >UniRef50_B8EL07 Surface presentation of antigens (SPOA) protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EL07_METSB Length = 314 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 3/284 (1%) Query: 49 ERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 +R+ L +I +R L L +V + + + + + H Sbjct: 28 DRMPMLHVILDRMIAQCSENLRQLSAPPAFFSVDTVAARRVGDVLDAYENKVAIGVYHAL 87 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 L+ +F + LFGGDG +GR+ + E R+ ++ L L A Sbjct: 88 AWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKALDLFGRALQSA 147 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 + ++ + R E ++ F I N V + I GE I +P + + +R Sbjct: 148 FSTVSDTAFKLERVETRLDFAVIAPR-NAFGVTAKIKLRILGRHGEMFILIPQAALNSVR 206 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 + L +++ D W + ++ +++E+ + L I L G +L ++ Sbjct: 207 QQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDIADLKVGGILQLKS 266 Query: 289 --PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 R+ + P+ G +G Y LRI+ ++ ++E Sbjct: 267 TPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSREQEFVDE 310 >UniRef50_B8DI83 Flagellar motor switch protein n=18 Tax=Listeria RepID=B8DI83_LISMH Length = 330 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 10/322 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKD-EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D LSQ +IDALL+ SE K + + + PYD + + E L++L+ I Sbjct: 1 MSDK-LSQEQIDALLSQISEGKVVDESTEIGDFGRFHPYDFHKPEKFGAEHLESLKTIAS 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHE-FARNLPVPTNL-NLIHL-KPLRGTGLV 116 F + + +R + + +P + + +I L P G ++ Sbjct: 60 AFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELGQIII 119 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 + + + L GG+ + E R + E+ + +L+ E D++K+++P+ Sbjct: 120 ELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEALKDSFKSVHPIS 178 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 E V E + TSPND++ ++ I +PF +E + L N + Sbjct: 179 PEIVNIETNPALLRV-TSPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN-VV 236 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIA 294 E + ++ +N+ + +++ + E +I ++ KL GDVL E D + Sbjct: 237 EYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRDTLKG 296 Query: 295 HVDGVPVLTSQYGTLNGQYALR 316 +V G Q A++ Sbjct: 297 YVTEKWKFECYMGKSGNQKAVK 318 >UniRef50_B4UFI3 Flagellar motor switch protein FliM n=3 Tax=Anaeromyxobacter RepID=B4UFI3_ANASK Length = 338 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 82/331 (24%), Positives = 151/331 (45%), Gaps = 22/331 (6%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARH 64 +L+ EI AL+ + + + S + + PYD +Q R++R ++ L+ INE+ A Sbjct: 8 VLTSDEIKALMGAIQDGRLATEGAPSSRAQVAPYDLTSQDRIIRGQMPTLDAINEQVASM 67 Query: 65 FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV-----FS 119 +GL R++ IT + + + A L P ++ ++ L G L V Sbjct: 68 LGIGLAGRTRQALRITSAPATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLAE 127 Query: 120 PSLVFIAVDNLF-----GGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 L D GGD R RE T EQ V+ R+L+L E + AW + P Sbjct: 128 ALLAAALGDRRVRQPEEGGDTR-------RELTSVEQLVLRRLLRLLAEAMTQAWAPVLP 180 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 E E +R E + +I SP D+ + + F ++ G + G ++ +P++ +E ++ L +P Sbjct: 181 FEPEVLRLEPDPRMASIA-SPTDVGIVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSSP 238 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RI 292 + R D+ + D L R+V+ +E+ + + +++L+L G+VL ++ + + Sbjct: 239 RRLSQRA-DERFADALAREVEQVPVEIRGLYGRARIPFARLLELAEGEVLLLDTDEGRPV 297 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 V G L G AL ++ + P Sbjct: 298 PVVVQGREKLLGTPTVSGGSLALVVDQPLRP 328 >UniRef50_Q6AJS9 Related to flagellar motor switch protein (FliM) n=1 Tax=Desulfotalea psychrophila RepID=Q6AJS9_DESPS Length = 323 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 140/325 (43%), Gaps = 9/325 (2%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVS----GESDIRPYDPNTQRRVVRERLQALEIIN 58 + ILS+ EI LL + K + ++ + ++ +II Sbjct: 2 EPILSKTEIAELLRAIRQGKISLDGGREVNSIDYEKVNLFELTPPV-DDKVKIPNFDIIM 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + FARH+ + L N L+R+ I + + + + P + ++ L PL+ GL++F Sbjct: 61 DSFARHYSILLSNQLQRTISIERIKLESFDFQDVFDKIAHPGAIGMLDLPPLQQGGLILF 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +PSL F V+ L G T R+ T E V+ ++ A G A+ + + Sbjct: 121 NPSLSFSLVERLLGASLDLETVCLNRDPTTIELNVLKVIIDHACLGLDKAFSPLVNMNSS 180 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 V+ + + + +I T P+D V+ F V +G +GE + +P + +E L E L L Sbjct: 181 LVKIDSKPRLMSI-TDPDDEVIACTFRVILGKDSGEILLLIPLAALEVLHEDL-QHLLRA 238 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHV 296 S W+ + +V+ ++ A + L + IL L GD+L + + + V Sbjct: 239 SAKRTTTWQGTIAAEVKKMTADITAQPGRLELSVGDILGLQVGDILEVDYDPSKPLKVLV 298 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLI 321 + P GT NG+ A+ + I Sbjct: 299 ENSPKFYGIPGTHNGKKAISLTERI 323 >UniRef50_Q1NGL0 Flagellar switch protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGL0_9SPHN Length = 295 Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 123/293 (41%), Gaps = 3/293 (1%) Query: 34 DIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFA 93 D++ + L L+ + ++ R R + + P++ R+ + ++ Sbjct: 4 DVQSFAFGRGELQAPVMLSGLDRLGDKLGRRIRALIEPIAGVRPNVQAQDARVLDFAAWS 63 Query: 94 RNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV 153 +P T+++L + PL+G L+ ++ VD +GG G P V G EFT TE R+ Sbjct: 64 AQVPSFTSISLYRILPLKGQMLLRLDAGMISTLVDCFYGGIGNRPLPVRG-EFTPTEDRL 122 Query: 154 INRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG-NLT 212 I R+ + + ++W + PL+ + E V + P D +V F V + + Sbjct: 123 IARISETLMVRMVESWADVLPLDASLILRETGVGYAA-AAQPADQMVLQRFVVTLTRDQE 181 Query: 213 GEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRL 272 ++ P S + + L + D W+ + R+++ +L A +L L Sbjct: 182 WPIDLLFPLSALRAVEALTGAKVPADDDQADPVWQGRIARRMRDIRLPARTVLARPNLSL 241 Query: 273 SQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPIL 325 + +++L GDV+P+ + V V G +G+ A +IE L Sbjct: 242 ADLMELKVGDVIPVTIGRALPLIVGNRIVAHGTIGEQDGRAAFQIEKLAQETD 294 >UniRef50_Q8D3E8 FliM protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3E8_WIGBR Length = 319 Score = 199 bits (507), Expect = 9e-50, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 167/317 (52%), Gaps = 5/317 (1%) Query: 16 NGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRR 75 N D E+ +E + S S + N + + ++ L +N++F + + + N ++ Sbjct: 5 NYDVEINNEKKNNFSEISKNIFLNKNKSKECNKSIIEKLNNVNQKFTGYIKKEITNYIKE 64 Query: 76 SPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDG 135 DIT I Q Y +F ++ ++NLI + +++ + V I +D FGG G Sbjct: 65 PIDITSKEIYTQKYCDFIKDFNTLVSINLIKTNLFKNDLVIILTTEFVSIILDIFFGGTG 124 Query: 136 RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA-INPLEVEYVRSEMQVKFTNITTS 194 + EF+ +E+R+I+ + KL + Y + K IN + +E V S+ ++ I Sbjct: 125 NSFGRKNLNEFSISEKRIIDILNKLIINCYQKSLKDNINSINLELVTSDTCIQL--INFD 182 Query: 195 PNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQN-WRDNLVRQ 253 N+ + + F+ NL F I +E L L N++ ++QN W++ LV + Sbjct: 183 KNEKIFISKFNFHYKNLKINFFIIFSTFSVEN-ENLFYEKKLSNNKEKEQNKWKNKLVNE 241 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQY 313 ++ S+L + FAD+S+ +S ++ LN G+++PI K ++ A+VD +PV + YG+LNG Y Sbjct: 242 IKSSKLLIQVKFADLSICVSDLINLNKGEIIPIVKTKKLTAYVDCIPVFSGSYGSLNGHY 301 Query: 314 ALRIEHLINPILNSLNE 330 ALR+E++IN +N +++ Sbjct: 302 ALRVENIINSYINKIDK 318 >UniRef50_D0I456 Flagellar motor switch protein FliM n=2 Tax=Vibrionaceae RepID=D0I456_VIBHO Length = 296 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 128/296 (43%), Gaps = 10/296 (3%) Query: 28 SVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQ 87 + + +D+RPYD + + L ++ + ++F + ++LR + T + Sbjct: 9 AENDLADVRPYDLTSPEHRIGAVLATIDNVCKQFETLAKQAFQHILRCPVEFTYQQQHTE 68 Query: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 + + + + + P G++V L F+ VD FGG G + + Sbjct: 69 TLQDHLKAMGEQSLYREFTVSPHHFNGVLVIEKELQFLLVDLFFGGKGIVKARTT---IS 125 Query: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPFHV 206 TE R++ R L+ Y+ AW++++P + + E + ++ T + + I F + Sbjct: 126 DTEWRMMARFFGQMLDQYAIAWQSVSPWQCQLQPKENLDLENTRQDSQLHQIC---RFTM 182 Query: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 + G +I LP + ++ LR + E Q+ + ++ + + L++ Sbjct: 183 NVCGHQGWIDISLPLNGLDFLRHRHATDDDAATAPELQHIVNA---TLKKAPIRLLSTLC 239 Query: 267 DISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + L L I+ L GDV+P+E P ++ P+ T++ N L+++++I Sbjct: 240 ERQLSLGDIMALKVGDVIPVELPGEVVVRAGRTPLFTAKVAEQNATLVLQVQNVIE 295 >UniRef50_A3T063 Flagellar motor switch protein n=2 Tax=Sulfitobacter RepID=A3T063_9RHOB Length = 318 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 113/288 (39%), Gaps = 4/288 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 +RL L+II +R + + L +L+R + ++ ++ P + LP PT L + Sbjct: 28 FTFDRLPMLDIIGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEGLPKPTFLAVG 87 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 P G LVV +++ AV+ + GG+ + FT E R+ Sbjct: 88 TGHPFVGEILVVMDQTVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGERLASAVFAEL 147 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 + + +E R E + + I + + + + + TG ++ +P+ +E Sbjct: 148 ERSLSVVGAANLELDRIETEAEGAAIAKNTS-LCARLRLSLTLAGNTGNLDLVIPYDALE 206 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 + L + WR + Q++ + ++L ++ L +I+ PGD + Sbjct: 207 QILPDLGKVYFGDRMVSQDQWRGLIGAQIERANVDLDVVLSENVFPLQKIMSWRPGDTID 266 Query: 286 --IEKPDRIIAHVDGVPVLTSQYGTLNGQY-ALRIEHLINPILNSLNE 330 IE+ P+ G N Y A++I + + + ++ Sbjct: 267 FGIEEGRDATVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314 >UniRef50_A4A5Y9 Flagellar motor switch protein FliM n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5Y9_9GAMM Length = 327 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 136/319 (42%), Gaps = 3/319 (0%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 + +L++ EIDAL+ + A+ G+ R +D + + + AL + ER Sbjct: 3 SEDVLTEGEIDALMESVDDDTSAADAADDGQ--FRRFDFAAREQSLLREFTALGPLVERH 60 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 A L + + + + +L ++ L PL G + Sbjct: 61 AEALGEALESGFSIEFTVRGDTPSLLTVADAVASLERTVAVSTTTLSPLAGPVFAIAPAD 120 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L+ V+ FGG P + T TE R+ R+ + L ++W PLE + Sbjct: 121 LLSFVVNAYFGGGSGGPAESARSNLTPTELRLAERIAEFQLSSMINSWVDKLPLEAGEIN 180 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 + + + +++++ F + G+ + ++ LPF+ +EP RE P ++ Sbjct: 181 TLGMPDRLEMLPA-SEMLLRIAFTLSAGDFSSALSVMLPFAALEPYRERFAPPRKQDDVF 239 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPV 301 E Q W R++ +LE+ A S+ L+ +L+L G V+P+ +++ VD V + Sbjct: 240 EGQTWEPFFRRELPGIELEVAGVLATQSIALADLLELEAGAVIPLAPAEQVSLKVDNVTL 299 Query: 302 LTSQYGTLNGQYALRIEHL 320 +YG+ +G A+++ L Sbjct: 300 AEGRYGSFDGVKAVQLHRL 318 >UniRef50_C2KTP4 Flagellar motor switch protein FliM n=3 Tax=Mobiluncus RepID=C2KTP4_9ACTO Length = 307 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 122/302 (40%), Gaps = 7/302 (2%) Query: 24 EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 + ++ + YD + ++ RE + +E+ E F R + L L + G Sbjct: 2 AKQSKADRAAEAKVYDFSKPMKLPREYARIMELALEAFTRSWINQLVGRLHVVITGSAGD 61 Query: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 + ++ Y ++ +P T + ++ + R G++ F VD+L GG G + Sbjct: 62 LVMRSYDDYIAKMPSTTCMVIMDFQNGRNKGILQFPRQTALAWVDHLLGGQGDIES-TPD 120 Query: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTP 203 R+ T E +++ LK + A+ + PLE + + E +F I+ P Sbjct: 121 RQLTEVEVSILSDFLKRVMMDLDMAFAGMLPLETKLLNLEYAPQFVQAYDGSTPILF-AP 179 Query: 204 FHVEIGNLTGEFNICLPFSMI-EPLRELLVNPPLENSRNEDQN--WRDNLVRQVQHSQLE 260 + G + +I +P +MI + + + N + + + R LV ++ +E Sbjct: 180 ITLTTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLEEIPVE 239 Query: 261 LVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIE 318 + F+ + ++ L GD LP+ P + VD + + + GT + A + Sbjct: 240 VAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILAEAAAGTSGSRLAAMVV 299 Query: 319 HL 320 + Sbjct: 300 SV 301 >UniRef50_UPI0001910677 flagellar motor switch protein FliM n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001910677 Length = 147 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 141/147 (95%), Positives = 145/147 (98%) Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR Sbjct: 1 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 60 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 +EDQNWRDNLVRQVQHS+LELVANFADI LRLSQILKL PGDVLPIEKPDRIIAHVDGVP Sbjct: 61 HEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPDRIIAHVDGVP 120 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNS 327 VLTSQYGT+NGQYALR+EHLINPILNS Sbjct: 121 VLTSQYGTVNGQYALRVEHLINPILNS 147 >UniRef50_A0Y177 Flagellar motor switch protein M n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y177_9GAMM Length = 230 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 104/183 (56%), Gaps = 1/183 (0%) Query: 140 KVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIV 199 K++ EFT TE+R++ +LK+ E Y +AW + + EY+ SE+ NI SP ++V Sbjct: 7 KLKAGEFTPTERRIVQMLLKIIFEDYKEAWAPVMDVSFEYLDSEVNPAMANIV-SPTEVV 65 Query: 200 VNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQL 259 V + FH+E+ G+F+I LP+SM+EP+RELL ++ + D W L ++ ++ Sbjct: 66 VISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEV 125 Query: 260 ELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 ++ ++ L L QI++L GD++P+E P+ I V+ +P ++ G AL+I Sbjct: 126 DMSTQLLEVDLTLQQIMELKAGDIIPVEMPEHITVFVEELPTFRAKMGRSRDNVALQISE 185 Query: 320 LIN 322 I Sbjct: 186 KIK 188 >UniRef50_Q1GNY8 Surface presentation of antigens (SPOA) protein n=1 Tax=Sphingopyxis alaskensis RepID=Q1GNY8_SPHAL Length = 312 Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 104/271 (38%), Gaps = 5/271 (1%) Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 ALE + +FAR R + L + + E++ P H PL Sbjct: 39 FPALESVANQFARSLRDLVRALGAPGVQVERSGAEQLSFAEWSGA-AAPAIFWRYHAPPL 97 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK 170 +G L+ + L+ VD +GG G+ + E E T E R R+ + + AW+ Sbjct: 98 KGPLLIAAARPLLLQLVDIFYGGRGQLGGERE--ELTDAEDRFAARLGRDIGMQIAAAWR 155 Query: 171 AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC-LPFSMIEPLRE 229 +E E + +++ V F + L G C P + + + Sbjct: 156 DKLVIEPELDCVTGDPAKLAAVRADDELFVQ-RFTLRGAPLDGRTIACAYPVAALRGIAG 214 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP 289 + P ++ D W L + ++ +L + + A + L ++L L GD++P+ P Sbjct: 215 DELLPDMQGGNGGDPAWTGALDKALRGVRLPVRSVLARPEISLVKLLALEVGDIIPLSMP 274 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + V G G NG A+ I+H+ Sbjct: 275 RHVPVTVAGRSFAFGSIGEANGNAAILIDHI 305 >UniRef50_P57182 Flagellar motor switch protein fliM n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=FLIM_BUCAI Length = 315 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 64/289 (22%), Positives = 128/289 (44%), Gaps = 4/289 (1%) Query: 43 QRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL 102 + + + + ++ LE IN F+ F N L+ S ++ +I+I + L Sbjct: 18 ESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRCL 77 Query: 103 NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG-REFTHTEQRVINRMLKLA 161 NLI + P + ++F + + +D LFGG G F + R+ T TE V +++K Sbjct: 78 NLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFI 137 Query: 162 LEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF 221 +S+ +K E+ + ++ F N + + F+ +I N FN +P Sbjct: 138 TNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINCFNFKINNTEIFFNFLIPK 197 Query: 222 SMIEPLRELLVNPPLENSRNE--DQNWRDNLV-RQVQHSQLELVANFADISLRLSQILKL 278 S+++ E ++ +N ++N + + + + ++ +++ IS+ +I L Sbjct: 198 SILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNL 257 Query: 279 NPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 + GDVL I+KP++I + + Y N Q + IE I+ S Sbjct: 258 SIGDVLSIKKPNKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSES 306 >UniRef50_D2LCZ9 Flagellar motor switch protein FliM n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCZ9_RHOVA Length = 314 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 122/312 (39%), Gaps = 4/312 (1%) Query: 25 PTASVSGESDIRPYD-PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 + + + + D ++ +RL L I E A + V Sbjct: 4 QSPDAATGAGVEIIDKLKELSKLSLDRLPVLTSIFEGMALSCCDEFREYCSPAVTAFVNQ 63 Query: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 I + ++ + + + ++ LVF VD ++GGDG + Sbjct: 64 IVSGDSWDLLEACSDGVSV-IFYCREWDARIVIGVERRLVFSIVDAMYGGDGSELPYEDK 122 Query: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTP 203 R FT E ++ + + ++++++ + + + R+E + F ++ N ++++ Sbjct: 123 RSFTALETKIGRVICEFGARSFTESFRTVGEITLAPERTETALDFASLG-QHNMMLIHAQ 181 Query: 204 FHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVA 263 ++ ++ G + +P +++ P+R+ L + D W L ++V +++ + A Sbjct: 182 ILFQVLDVGGVMFVLIPQNVLLPVRQKLERQRAPMLSSVDPRWTSLLSQRVSRAEVTMDA 241 Query: 264 NFADISLRLSQILKLNPGDVLPIEKPDR-IIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + L Q+ KL G L +E +R I +G + G G Y + I+ ++ Sbjct: 242 VILGKEIELGQMFKLEVGKTLELEGTERNIFFEYEGDRLFRGCLGRERGTYTVTIDEALS 301 Query: 323 PILNSLNEEQPK 334 I E + + Sbjct: 302 DIDVEETESRHR 313 >UniRef50_C6QEZ9 Surface presentation of antigens (SPOA) protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEZ9_9RHIZ Length = 322 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 117/297 (39%), Gaps = 21/297 (7%) Query: 49 ERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 +RL L+ I + R L ++ + + E LP T ++ + Sbjct: 28 DRLPGLQTIFGQLPRVMVEELGSVSSFPVKARLLDLSASTIGESCN-LPPNTYAGVVRAE 86 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 R + P+L + V++ G +G PT + R T T+ ++ M + S A Sbjct: 87 RWRNWLYFISDPTLTALFVESALGCEGLPPTGLTERRLTKTDANILRVMFRRVTRALSHA 146 Query: 169 WKAINPLEVEY----VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMI 224 + + ++++ + E++ + S + V++ +E TG I +P + I Sbjct: 147 FSILVDVQLDLGDVVDKIELEPQL-----STSSPVISARLAIEYFGQTGILTIVIPQAAI 201 Query: 225 EPLRELLVNPPLENSRN---------EDQNWRDNLVRQVQHSQLELVANFADISLRLSQI 275 EP+R+LL + +D +W L ++ + + L + + L ++ Sbjct: 202 EPVRDLLAVASAGEAVGAAPPSARAYDDTSWSKQLSEEIARAFIGLNGILEERPISLGEV 261 Query: 276 LKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 + G V+ + R+ D +P+ + G +G LRIE + +++E Sbjct: 262 QRFAVGSVVELTSTSLARVRLDADEIPLFWCELGKRDGTLTLRIEDDFDQNKETIDE 318 >UniRef50_UPI0001C312B7 surface presentation of antigens (SPOA) protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B7 Length = 322 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 49/323 (15%), Positives = 124/323 (38%), Gaps = 8/323 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M + IL+ +I AL+ + + +A+ ++ D + E+ + + + Sbjct: 1 MSE-ILTNDQIAALVEAAKHGELPDDSAATRRGRRLKTVDFARPTKFTSEQERRIVRTLD 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F + L LR ++ V + + LP + + + P L+ Sbjct: 60 MFCQTAAARLTAELRVPLELEVINTTQLTWSAAQQQLPPASLGTPLEVAPHDTRMLMTAE 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 V +A++ L GG P + R+ + + + R+ + S W+ + + Sbjct: 120 LPFVLMAIEYLLGGAPERPPRQ--RKLSEIDWVLSKRLFETLTTQLSIVWQDLAGQTLAA 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 + V+ + + ++ + I + + +P+ I+P+ + + L + Sbjct: 178 QEVDSHVEGMQVA-AISEPTLTITLESRINRHSSTLALLIPWVSIDPVADQIAGRDLR-T 235 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVD 297 R +D + + + + + A + + + +L L PGD++ + D ++ + + Sbjct: 236 RADDPRAAALVQAALSGAHVTMRAEVGSVEMAIDDVLGLAPGDLVKLSSLAADGVVVYAE 295 Query: 298 GVPVLTSQYGTLNGQYALRIEHL 320 VP+ +Q G + A++I Sbjct: 296 DVPIHHAQPGRSGARRAVQIVDR 318 >UniRef50_C7M221 Surface presentation of antigens (SPOA) protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M221_ACIFD Length = 302 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 61/289 (21%), Positives = 119/289 (41%), Gaps = 7/289 (2%) Query: 27 ASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRI 86 + + E +R D R + LE++ E R + LRR + +G + Sbjct: 4 ENEARERQVRTVDFRLPHSFDRAEQRGLELLVENALRPAATLMGASLRRGVRLELGRMDQ 63 Query: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF 146 P+ + P + L PL G++ F +D G + +E R Sbjct: 64 LPWEQVVAQQDGPALVISFALVPLGSRGVLRFGADAALRLLDLR---LGGDGSPIEPRAL 120 Query: 147 THTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHV 206 T EQ ++ ++ L + + + + + ++ V +E ++F + SP ++ + P + Sbjct: 121 TELEQGLLVQVFSDLLVQLASSLQTLLDVRLDRVGAETSLEFVQV-ISPGEMCLVVPIAL 179 Query: 207 EIGN-LTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANF 265 IG+ L E + LP+SM+ P+ EL+ + +RD L ++ +LE+ F Sbjct: 180 GIGDELESELTLYLPYSMLRPVVELIAQRAIVAVDRGGDTFRDLLAARLHDVRLEVSVRF 239 Query: 266 ADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDGVPVLTSQYGTLNGQ 312 S+ +L+L PGDV+P+ + VD + + G + Sbjct: 240 EPTSISSRTLLELAPGDVVPLGHRQGQPAWVIVDRTRLHRAVMGQSGSR 288 >UniRef50_Q8GKQ6 FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP RepID=Q8GKQ6_9THEM Length = 165 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 5/160 (3%) Query: 168 AWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL 227 AW +++P +E +F I S +++V+ F V G + G ++C P S+IEP+ Sbjct: 1 AWMSVHPFIPVVESTETNPQFVQIVPS-SEMVLAITFFVSFGKVEGYMSLCWPSSVIEPI 59 Query: 228 RELLVNPPLENSRNED--QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 E L + ++ + + L +Q ++++++A + L L +IL L GDV+ Sbjct: 60 GEKLTTQSWFKVKQKEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVIR 119 Query: 286 IEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 +++ + I V+G + G G YA++I +I Sbjct: 120 LKEHYDEPIRVEVNGRTKFLGKPGQYKGNYAVKITEVIEE 159 >UniRef50_Q89AZ4 Flagellar motor switch protein fliM n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=FLIM_BUCBP Length = 331 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 130/315 (41%), Gaps = 14/315 (4%) Query: 28 SVSGESDIRPYDPNTQRRVVRERLQ-ALEIINERFARHFRMGLFNLLRRSPDITVGAIRI 86 + S I PY T + ++ LE ++E F + F + I+ I Sbjct: 17 KIDISSKIFPYYQTTDYYLTYHNMKDRLENMHECFLKQFTKHISEYSDVDCKISFYKFII 76 Query: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGG-DGRFPTKVEGRE 145 Q + +N+ + + + P + G++ S ++ ++ LFGG + + + ++ Sbjct: 77 QKFKNIKKNIKNNSISDCFEISPYKKLGIIFVSDNISDYLIEYLFGGCELKNSSNGLFKK 136 Query: 146 FTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNIT----TSPNDIVVN 201 T + ++ +M K+ LE Y W ++ +++ + + +Q I+ + D V Sbjct: 137 LTLSTINIVKKMFKIILEQYYFLWNKVSLCKMKLILNRLQ-NLNEISNVNFINSKDTFVT 195 Query: 202 TPFHVEIGNLTGEFNICLPFS-MIEPLRELLVNPPLENSRNEDQNWRD-NLVRQVQHS-- 257 F + I N G ICLP S + E VN S N + + +++ Sbjct: 196 FLFRLRIANKFGMLGICLPTSLSFQCNNEADVNSVHNVSHISYDNVVNTEIRKRLFQVIV 255 Query: 258 ---QLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYA 314 ++ L + + LS+I+ GD+LPI D ++A+ + VP+L +Y +Y Sbjct: 256 YNCKIVLKIVLIENYITLSKIIAFKVGDILPIHMLDNVVAYSENVPILIGKYKMFKNKYV 315 Query: 315 LRIEHLINPILNSLN 329 + N LN N Sbjct: 316 FCVVDYYNSTLNYKN 330 >UniRef50_Q8KA39 Flagellar motor switch protein fliM n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=FLIM_BUCAP Length = 311 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 134/296 (45%), Gaps = 4/296 (1%) Query: 35 IRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 I + N R + + ++ LE IN++F + M + ++ + ++ ++I Y + Sbjct: 18 IYKREKNLDRFLDQNEMKKLEKINKKFIQKIIMIFSSFIKSNIELNFYTVKINSYTNDDK 77 Query: 95 NLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVE-GREFTHTEQRV 153 N N + ++ L + FSP+ + + +D LFGG G +++ +E T+TE + Sbjct: 78 NF-KHLYANSLKIETLEKKSFIFFSPNFLSVFIDFLFGGKGNSIIRMDIKKEITYTEHVI 136 Query: 154 INRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTG 213 +++ ++ Y ++ K ++++++ + +K ND+ + F + + Sbjct: 137 NKKIVGFIIDAYCESCKDFFYIDIKFLDFNI-IKLNKHFFYTNDLFITNYFSFNLNGIKI 195 Query: 214 EFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNL-VRQVQHSQLELVANFADISLRL 272 +I +P S+I+ + ++N +N ++ ++N + + + +L++ + Sbjct: 196 FLSILIPVSIIKEKNKKIINFLDKNIFSKKTILKENFFIENLSNIELDVTVELIPSYISK 255 Query: 273 SQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 L GDV+ IE P ++ ++ P+ ++ + + + +E ++ L Sbjct: 256 HTFDNLREGDVITIEDPGKVTVCIEKKPIFLGKHKIFDEKSIIFLEKFLHQNLEKK 311 >UniRef50_B2TXI0 Flagellar motor switch protein FliM n=4 Tax=Enterobacteriaceae RepID=B2TXI0_SHIB3 Length = 122 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 115/117 (98%), Positives = 115/117 (98%) Query: 218 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 277 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV NFADISLRLSQILK Sbjct: 6 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVTNFADISLRLSQILK 65 Query: 278 LNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 L PGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK Sbjct: 66 LKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 122 >UniRef50_Q12PK7 Surface presentation of antigens (SPOA) protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12PK7_SHEDO Length = 181 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 1/149 (0%) Query: 173 NPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV 232 +E +Y+ SE+ NI SP ++VV FH+E+ G+F+I +P+SMIEP+RELL Sbjct: 9 IYVEFDYLDSEVNPAMANIV-SPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLD 67 Query: 233 NPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRI 292 + ++ D W L ++ Q+ AN + L L ++ L GD++PIE P+ I Sbjct: 68 AGVQSDKQDTDMRWSQALRDEIMDVQVGFDANIVEHELTLRDVMGLRAGDIIPIELPEHI 127 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 + ++ +P + G AL+I I Sbjct: 128 MMRIEDLPTYRCKMGKSRDHLALKISEKI 156 >UniRef50_Q18D13 Putative flagellar motor switch protein n=5 Tax=Clostridium difficile RepID=Q18D13_CLOD6 Length = 293 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 116/295 (39%), Gaps = 15/295 (5%) Query: 34 DIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFA 93 D++ YD + RE L L + F + ++ + L+ + + V +I Y F Sbjct: 3 DMKEYDFGKPQSYSRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTFL 62 Query: 94 RNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV 153 + + ++P+ S+ + +D GG G K RE T +++V Sbjct: 63 DRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKV 120 Query: 154 INRMLKLALEGYS--DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHV-EIGN 210 + ++ + + ++ I + + + + + SP V V Sbjct: 121 LLHLMDDLVRNMHLFEGFENI-----QVLDTHTHINLPQLC-SPTAPVCVVDLKVLNDNE 174 Query: 211 LTGEFNICLPFSMIEPLRELLV--NPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADI 268 G ++C P++ +E L E + + ++ + + + V + +L ++A + Sbjct: 175 CIGSVSLCFPYNGLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKV 234 Query: 269 SLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 S+ + +LKL GDV+ K D I V+ T+ G ++ + ++I + Sbjct: 235 SINVEDLLKLEVGDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAV 289 >UniRef50_A1UTV5 Flagellar motor switch protein FliM n=1 Tax=Bartonella bacilliformis KC583 RepID=A1UTV5_BARBK Length = 323 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 105/309 (33%), Gaps = 3/309 (0%) Query: 24 EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 E + + D+ + + L + + I A H + + I V + Sbjct: 12 ETQENEEKKQDVLAQHILRAAGLSSDDLMSFQYIFRDAASHLCSQINHYTPLEFTIDVVS 71 Query: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 + + + + T L + V LV + + FG G Sbjct: 72 LDTLKIDKITQTIGTDTLLIDFSSDRWGNDVIFVLDSVLVELITETFFGATEPKIINRNG 131 Query: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTP 203 R F+ TE + KL + + + + ++ +F T + + + Sbjct: 132 RPFSPTECSISEHFGKLLANAMDSVFGTGDKSLLIFTQTRKAQEFNTETFHQSQM-FSCT 190 Query: 204 FHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVA 263 ++ G NI +P S P+ E + + D W L ++V + +++ A Sbjct: 191 LSIKCGEAEAHLNILMPRSCHRPIHEAITRALRAPEKRMDPLWTKRLRKEVSQAHVQIEA 250 Query: 264 NFADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 S+ L+++L L G VLP+ ++ + G + +++R+ I Sbjct: 251 FMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGKIGKNFSIRVTDPI 310 Query: 322 NPILNSLNE 330 + +NE Sbjct: 311 DEEKEMINE 319 >UniRef50_A6BA62 Flagellar motor switch protein FliM n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BA62_VIBPA Length = 168 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 83/131 (63%), Gaps = 1/131 (0%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EIDALL+G +V D + +D ++Q R+VR R+ LE+INER Sbjct: 1 MTD-LLSQDEIDALLHGVDDVDDIDEPLDNDTEGAVSFDFSSQDRIVRGRMPTLELINER 59 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FARH R+ LFN+LR++ ++++ +++ + E+ L VPT+LN++ +PL+GT L+ Sbjct: 60 FARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEA 119 Query: 121 SLVFIAVDNLF 131 LVFI VD Sbjct: 120 RLVFILVDKFL 130 >UniRef50_A0Z384 Flagellar motor switch protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z384_9GAMM Length = 323 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 121/328 (36%), Gaps = 17/328 (5%) Query: 1 MGD-----SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALE 55 M + +LS+ EI+AL V T +V + + +D + + L+ Sbjct: 1 MSEADDNQPVLSEEEIEAL------VDHAVTDNVFDDGQFKSHDFGAGEALTLSKWSELD 54 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 + A + L + I A + + L +KPL G Sbjct: 55 GLLRAHAEVLQGVLLRNFGQQATIEPFAPLFARVGDLIPAMSDRIALITTEIKPLEGESH 114 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + F + V+ FGG K+ G+ T +EQR+ ++ K L + W L Sbjct: 115 LEFPGDFLSFLVNQYFGGSTVASPKLAGK-VTPSEQRLSEQLAKDVLRTLVEVWSDRLAL 173 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPF--SMIEPLRELLV 232 E + ++ ++ + VV + V G + GEF + LP+ ++ R L+ Sbjct: 174 EPGDLYVDITTDRLSLLPADMGYVVL-TYSVACGSDYQGEFRLLLPYESMALQAPR-LMP 231 Query: 233 NPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRI 292 E + W L V +EL + + L +L G V+PI++P Sbjct: 232 ARREEPEVVVEPEWEARLQSAVPEIDVELCGVVSLLETSLRNLLAFKVGTVIPIDEPQTA 291 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHL 320 V+G + +YG + A++I Sbjct: 292 QLMVEGRGIARGKYGAHDSSRAVQITDF 319 >UniRef50_A6X6R4 Surface presentation of antigens (SPOA) protein n=30 Tax=Brucellaceae RepID=A6X6R4_OCHA4 Length = 317 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 112/311 (36%), Gaps = 3/311 (0%) Query: 22 KDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITV 81 D T + +SD+ + + + L++L + + + HF L + + D+ Sbjct: 4 PDTATLGQNRKSDVLAENLLRAAGLSGDDLKSLAHVFKDASTHFCDRLKHGCAAAFDVEA 63 Query: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 G + FA L + + + T + +LVF ++ ++G G + Sbjct: 64 GQVESTDDAAFADILDKAAIIAPLKAERWGSTLYLTADATLVFSVIEAMYGAQGHVGSVD 123 Query: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVN 201 E R F EQ++ + + A +F + + Sbjct: 124 EDRPFGMLEQKISALLAGHLASSLDQVFAANGQALFTAGECTDTAEFDRENFERS-RLFA 182 Query: 202 TPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLEL 261 V TG+ ++ LP S +P+++ + D +W + ++V +++EL Sbjct: 183 CRIDVTAAGKTGQVHLLLPRSTHKPMQDAVAAFLRRPMNQTDPSWAKKMRQEVSRARIEL 242 Query: 262 VANFADISLRLSQILKLNPGDV--LPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 A S+ L + L G V LP++ ++ + G + +++ Sbjct: 243 EAFIQQGSMTLDALSMLEIGQVLKLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGD 302 Query: 320 LINPILNSLNE 330 +N + ++E Sbjct: 303 PVNQEEDFIDE 313 >UniRef50_Q1YLL0 Possible flagellar motor switch protein fliM n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YLL0_MOBAS Length = 348 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 3/293 (1%) Query: 40 PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP 99 RL L+ + E +A + + S D+T+ + E Sbjct: 53 LRNAAEFEPRRLPRLKHMAETWAASAATKISAIAGASLDLTLREVESDFGPELDEAEDDG 112 Query: 100 TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLK 159 T + R G + + + LF + P ++ ++ L Sbjct: 113 TMYAPLSSPRFRSPGYAMLDHEALEALISALFAAEPSPPGTPPRTPT-DLDRSIVKLGLA 171 Query: 160 LALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICL 219 + ++ I L + + D + F + + +L+ L Sbjct: 172 TIADSALSVFEMIGELRLSVGNIINAAELGEQLAGETDRFILFRFDLTVASLSTTITFAL 231 Query: 220 PFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLN 279 P ++ P L PP + +++W + + S L L A + L I Sbjct: 232 PGALFAPHLRFLREPPKMPPPDREESWSNAIKESFAKSDLRLSAIVTKKKIDLGTIAGFA 291 Query: 280 PGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 GD +P++ I + P+ + G Y +RIE I+P +++ Sbjct: 292 VGDTIPLDVSANSLIAIECEDQPLFRAHMGRSRDSYVVRIEERIDPAEEFIDD 344 >UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R9W6_AMMDK Length = 360 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 64/358 (17%), Positives = 121/358 (33%), Gaps = 51/358 (14%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 + LSQ EIDALL G DE + + + + E AL I Sbjct: 4 EHFLSQEEIDALLKGFGASPDEGSGTAKENPE-----------LTEEEKDALGEIGNIAM 52 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI-HLKPLRGTGLVVFSPS 121 L +L R IT +++ E ++ VP + + + + L G L+V Sbjct: 53 GAAATALSEILGRRVTITSPHVQVTTKEELLKSFTVPYLIVSVPYTEGLEGLSLLVVKVE 112 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW---KAINPLEVE 178 + D + GG+G+ + E + +N+M+ A +D + I P +V Sbjct: 113 DASVIADLMMGGEGKRSPTLGEIEISAV-AEAMNQMMGAAATSLADIYHRTVGIAPPQVR 171 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLE 237 E + ++ D + F + I + L E L S + LL Sbjct: 172 IFSKEGEAATNDLGV--EDPIAVISFRMTIEDLLDTEIMRVLSVSTAKEEASLLWQGVYG 229 Query: 238 NSRNEDQNWRDN------------------------------LVRQVQHSQLELVANFAD 267 ++ + + + + L++ Sbjct: 230 EEEKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRLELILDIPLKVSVVLGR 289 Query: 268 ISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 + +IL L PG +L ++ + + V+GV V + + + +RI ++ P Sbjct: 290 TRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEENFGVRITSIVTP 347 >UniRef50_Q0G106 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G106_9RHIZ Length = 321 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 55/305 (18%), Positives = 108/305 (35%), Gaps = 20/305 (6%) Query: 40 PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP 99 + + +L L I E A + L L +T + + + Sbjct: 17 LKSASELEPSKLHRLAAIVEETAEELTLALNRLSIDKVAVTFRDFEMGQGADGIGDAGDD 76 Query: 100 TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLK 159 + K + +L + + FG + + R T ++ ++ K Sbjct: 77 VLFATLTSKRFGRPAYLAAPETLADVCISAYFG--AKPAERAGKRALTDLDRALVKTTFK 134 Query: 160 LALEGYSDAWKAINPLEVE---YVRSEMQVKFTNITTSPND-IVVNTPFHV-EIGNLT-- 212 +E ++ A+ I+ + +V E + + PN V+ F + + G+ + Sbjct: 135 TFVETFASAFAPIDEAGLAAGGFVECE---ELDELLGGPNAGRYVSMTFGLSKAGDRSAT 191 Query: 213 ------GEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 + LP S + R +L P + D+ W + +VR + S L L A A Sbjct: 192 AEEEPLSTLTLALPSSYLSLHRRVLSEPLPLPQPSPDETWSEAMVRNFEKSGLHLEAVLA 251 Query: 267 DISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 + L+++ G L ++ + I +G P+ SQ G G Y R E ++P Sbjct: 252 RKQVPLAEVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSYVARFEEAVDPT 311 Query: 325 LNSLN 329 +N Sbjct: 312 QEFIN 316 >UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VT98_CLOBO Length = 394 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 55/384 (14%), Positives = 124/384 (32%), Gaps = 68/384 (17%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPN---TQRRVVRERLQALEIINE 59 + LSQ EID+LLNGD + + S E +++ + ++ ++ + L I Sbjct: 5 NGFLSQDEIDSLLNGDENNDVQENSDESTEENVKDVENAQESSEDKITDIEMDLLGEIGN 64 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVF 118 L ++ +IT + + VP L + + + G L+V Sbjct: 65 ISMGSASTALSTIIGNVVNITTPQVSSTTLEKLRNTFEVPNIALEVKYTSGIVGGNLLVM 124 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINP 174 + + + GGDGR E E T E+ +N+M+ A + + Sbjct: 125 KIPDAAVIANLMMGGDGRI---EEKSELTEIEESAVSEAMNQMIGSAATSMATMFSREVN 181 Query: 175 LEVEYVRS--EMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLREL- 230 + + + + T ND ++ F + IG+ + P + + + Sbjct: 182 ISPPVYKIWKDTSMPLCE-TIKENDDIIKVSFKLTIGDLVDSNIMQIFPIKTAKKIVSIM 240 Query: 231 LVNPPLENSRNEDQNWRDNLVRQ------------------------------------- 253 + + + N + + Sbjct: 241 MGQEEKGEAVEQSSNKTQQINKMQNQETSSNSQVEPKPVETYTKSQPQVNIQKASFAPLQ 300 Query: 254 -------------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDG 298 + LE+ + IL L G ++ ++K + + +V+G Sbjct: 301 ESNINGAPQNIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNG 360 Query: 299 VPVLTSQYGTLNGQYALRIEHLIN 322 + + ++ + +RI ++++ Sbjct: 361 KKIAYGEVVVVDENFGVRIVNIVS 384 >UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G689_ABIDE Length = 370 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 61/380 (16%), Positives = 120/380 (31%), Gaps = 71/380 (18%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQ EI+ALL G E ++ P + E A+ I+ Sbjct: 2 DGMLSQEEINALLGGMGEDSGSDSSDTQTLGGADP--------LSGEEKDAIGEISNISM 53 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPS 121 L LL + +IT + I + + +++ P + + +++ L G +++ Sbjct: 54 GTAATTLSTLLNQRVNITTPNVSIANWDDISQSYDRPCVFIQISYIEGLDGNNILILREK 113 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK-------AINP 174 V I D + GG G T V+ E T I + + + + I+P Sbjct: 114 DVKIITDLMMGGSG---TDVDATELTELHLSAICEAMNQMMGSAATSISSVLEKKVDISP 170 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVN 233 + E + + V F +EIG+ + E P + L ++ Sbjct: 171 PTASLIDLEGTIDEEGLGDFLKGQFVKVAFRLEIGSLIDSELMQLYPIDFAKELYSKFMS 230 Query: 234 PPLENSRNE---------------------------------------------DQNWRD 248 D N Sbjct: 231 STETEQPAPAAQQPAAPTPQPVAQQPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINP 290 Query: 249 NLVRQ----VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVL 302 + ++ + LE+ + + +IL +PG ++ + K + I V+G V Sbjct: 291 LMQQENIGLIMDVPLEVTVELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVA 350 Query: 303 TSQYGTLNGQYALRIEHLIN 322 + + + +RI ++ Sbjct: 351 KGEVVVIEDNFGIRITEIVK 370 >UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=Bacteria RepID=FLIY_BACSU Length = 378 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 71/389 (18%), Positives = 133/389 (34%), Gaps = 83/389 (21%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M ++ LSQ EIDALLNG DEP ER EI N Sbjct: 1 MENNRLSQDEIDALLNGTGSTLDEPEIPEVD------------DLSEMERDAIGEIGNIS 48 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 F L LL + DIT ++ + P + + P P + + + + G+ L+V Sbjct: 49 FGSS-ATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGFSGSNLLVVE 107 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK---AINPLE 176 S I D + GGDG+ G Q +N+M+ A S + I+P Sbjct: 108 QSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFSKKIDISPPR 167 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPP 235 VE + + I ++++V F++++G + P + ++L+ + Sbjct: 168 VELLDVTEEKGTDRI--PDDEMLVKVSFNLKVGELIDSSIMQLYPLTF---AKDLISSLM 222 Query: 236 LENSRNEDQNWRDNLVRQ--------------------------------VQHSQLELVA 263 S E++ + + + VQ S +E A Sbjct: 223 NSESAEEEETVQPEVTYEQPKEPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSA 282 Query: 264 --------------------------NFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 + +IL+L+ G ++ ++K + + Sbjct: 283 FDPNEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDIL 342 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPI 324 V+ V + + + +R+ +++ Sbjct: 343 VNQRIVAKGEVVVIEENFGVRVTDILSQA 371 >UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Thermotogaceae RepID=A5IJA7_THEP1 Length = 346 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 62/363 (17%), Positives = 125/363 (34%), Gaps = 66/363 (18%) Query: 1 MGDS-ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M + LSQ EID LL G + E + I Sbjct: 1 MTEKEFLSQEEIDKLLGGSDTGGV----------------------LTLEEKDMIGEIGN 38 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLP-VPTNLNLIHLKPLRGTGLVVF 118 L +L R ITV +R + + +++ +++ L G ++V Sbjct: 39 IAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYIEGLEGLNVLVL 98 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV----INRMLKLALEGYSDAWK---A 171 + LV + D + GG G +VE E + +N+M+ A S+ Sbjct: 99 NKKLVAVIADLMMGGSG----EVETEELDEIKLSAVGEAMNQMMGSAATSLSELLGITIN 154 Query: 172 INPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRE 229 I+P +VE + + +F +T +P V F +EI L +F + +++ + E Sbjct: 155 ISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEIEIEGLPKSKFYQVISADLVKKMYE 214 Query: 230 LLVNPPLEN---------------------------SRNEDQNWRDNLVRQVQHSQLELV 262 E S + + + L + Sbjct: 215 YFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLLDIPLRVT 274 Query: 263 ANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + L ++L++ PG ++ ++K + + V+G + + ++ + +RI + Sbjct: 275 VELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEI 334 Query: 321 INP 323 ++P Sbjct: 335 VSP 337 >UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J737_DESRM Length = 411 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 68/407 (16%), Positives = 134/407 (32%), Gaps = 91/407 (22%) Query: 1 MGDSILSQAEIDALLNGDSEVKD--------EPTASVSGESDIRPYDPNTQRRV------ 46 M +LSQ EIDAL+ G + E + +V + +P + + Sbjct: 1 MS-KLLSQEEIDALMKGQDLGNEPDPLGNQSEMSDTVIEPENTQP-NLAKPEALAEEANY 58 Query: 47 ----VRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL 102 E + AL I L LL + +IT ++IQ + + +P + Sbjct: 59 CSLMTLEEMDALGEIGNISMGSASTTLSELLSQKVNITSPRVKIQTKQQLFDSFNIPYLV 118 Query: 103 NLIHL-KPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRM 157 + + L G ++V + + GGDG ++ E + E +N M Sbjct: 119 IKVDFNEGLNGYNVLVIKLNDAATMASLMMGGDGTPMSE----EISELEISAASEAMNMM 174 Query: 158 LKLALEGYSDAWK---AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTG 213 + A S ++ I+P + +RS+ D++V F ++IG+ + Sbjct: 175 IGTAATSLSQMFQRTINISPPQTNLLRSKGDP-LAQPPQDIEDVIVVVSFDMKIGDLVDT 233 Query: 214 EFNICLPFSMIEPLRELLVNPPLENSRNE--------------------DQNWRDNLV-- 251 E + + LL+ + + + D D L Sbjct: 234 EIMQIMSVETAKEEAHLLLKDIMGGTEEQVEAPMVPTEAATSATSIPGSDDRESDELAGI 293 Query: 252 ---------------------------------RQVQHSQLELVANFADISLRLSQILKL 278 + L++ + +LK+ Sbjct: 294 MMQETAPPPTPAMPPQAAPIKQTSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKI 353 Query: 279 NPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 PG V+ ++ + + V+G V T + +N + +RI ++I+P Sbjct: 354 APGSVVELDSLADEPVDILVNGTLVATGEVVVVNENFGIRITNIISP 400 >UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEY5_PETMO Length = 372 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 126/371 (33%), Gaps = 64/371 (17%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D IL+Q+E+D+LL G + D + + ++ L + I Sbjct: 6 DRILNQSELDSLLKGLNNTDDPKESEETS---------TVDEKLD-ALLDMIGEIANITM 55 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLP-VPTNLNLIHLKPLRGTGLVVFSPS 121 L LLRR +I I + N + + + K L G +V + Sbjct: 56 GSGATTLSTLLRRKIEIQYPQTDIIKFKNIITNFEGENVVVTVEYKKGLYGLNTLVLPLN 115 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L I D + G + +E RE ++ + + S A ++ Sbjct: 116 LTNIIADLMLG---KDLENIEERELDDISLSAVSEAMNQMMGTASTALSDFLKTNIDISP 172 Query: 182 --------SEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRELLV 232 SE ++F I T V++ F+V+I + F +P + +REL+ Sbjct: 173 PSSRVVNFSEANIEFPPIETDKEAYVISIKFNVKINGIAETTFWQFIPMKFAQKIRELVE 232 Query: 233 NPPLENSRNEDQNWRDNLVRQ--------------------------------------- 253 + + +E+ + N ++ Sbjct: 233 KTFGKTTEDEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEEPISPNIDLSKLEL 292 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + LEL L L +IL+L+ G ++ + K + + + +G + + ++ Sbjct: 293 LLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVVIDE 352 Query: 312 QYALRIEHLIN 322 + +R+ +++ Sbjct: 353 NFGIRVTEIVS 363 >UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADB7_CARHZ Length = 347 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 55/362 (15%), Positives = 117/362 (32%), Gaps = 61/362 (16%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + LSQ EIDALL + P+ S + I D + Sbjct: 1 MDNQFLSQEEIDALLRS----EPVPSESEGSGTGIILTDAEKDALGEAGNISM------- 49 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 L L+ R IT + +Q EF + P + + + L G +++ Sbjct: 50 --GSAATSLSQLVGRKVIITSPRVEVQKEKEFFASFREPYMVIEVEFTEGLSGKNVLIIK 107 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 + V + + GGDG E T EQ + + + A I ++ Sbjct: 108 ENEVGVIASLMMGGDGTHSG-----EITELEQSAAQEAMNQMIASSATALSEIFKRKINI 162 Query: 180 VRSEMQVKFTNITTSPNDI--------VVNTPFHVEIGN-LTGEFNICLPFSMIEPLREL 230 + I + ND VV F+++I + + + + + + + ++ Sbjct: 163 ----SPPRSKMINSRENDTYEPFGGHEVVVIYFNMQIEDLVDTDIMQVMEPATAKEVAQM 218 Query: 231 LVNPPLENSRNEDQNWRDNLVRQ---------------------------VQHSQLELVA 263 L+ + E ++ + L++ Sbjct: 219 LLAKVYGSPETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEV 278 Query: 264 NFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 + +IL PG ++ +++ + + V+G V + + + ++I ++ Sbjct: 279 VLGRTRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQIL 338 Query: 322 NP 323 +P Sbjct: 339 SP 340 >UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ/HrcQ n=2 Tax=Cystobacterineae RepID=Q1D9K8_MYXXD Length = 467 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 110/321 (34%), Gaps = 26/321 (8%) Query: 20 EVKDEPTASVSGESDIRPYDPNTQRRVVR------ERLQALEIINERFARHFRMGLFNLL 73 E S E RP+ +V R ERL+ L + A L L Sbjct: 34 ESPASQEPPASQEQRWRPFAFRNLEKVSRAQGLLAERLRWLTP-ADGTAVAVAARLTELF 92 Query: 74 RRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGG 133 +TV +++++P E R L PT L ++ L+G ++ +L +AVD L GG Sbjct: 93 DAEVRLTVESVQVRPMAELRRFLGDPTFLAVLAPGALQGRAVLEVELALAHVAVDLLLGG 152 Query: 134 DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITT 193 G R T E+ V+ ++ L+ +A P V + Sbjct: 153 AGETVGL---RPLTDIEEGVMAYVVLEGLKLLVPGLQAAVP-RPRLDGVARGVDEVSARL 208 Query: 194 SPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQ 253 + ++ +G +G + +P ++++ + + D + + Sbjct: 209 GDDGPMLAVHLQATLGPHSGMVRLVVPAAVLDAAEPAVESTQRRARGKADL---EAFASR 265 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIE----KPDRIIAHVDGVPVLTSQYG-- 307 + + L A + + L DVL ++ + D+ A + V G Sbjct: 266 LSAVRSWLRAEIGSAEISGQDLASLRVKDVLLVDALSARTDKGEAGTARLRVGKGTAGWA 325 Query: 308 ------TLNGQYALRIEHLIN 322 +G+Y RI + Sbjct: 326 EAEVFVGEDGRYQARITDFVQ 346 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNG 311 + L++ A + + Q++ L G VL + + + + V+G V + L G Sbjct: 397 LGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELVELEG 456 Query: 312 QYALRI 317 Q +RI Sbjct: 457 QLGVRI 462 >UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I888_9CLOT Length = 370 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 124/383 (32%), Gaps = 85/383 (22%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + LSQ EID+LLNG ++ + L I Sbjct: 3 MSNGFLSQEEIDSLLNGGADSV-------------------KPELISEIEKDLLGEIGNI 43 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL-NLIHLKPLRGTGLVVFS 119 L+ L+ + +IT +++ E P + ++ ++ + G +++ Sbjct: 44 SMGSASTALYQLINKQVNITTPKVKVTTLKEIKDGFEYPNIILDVEYVSGITGRNILIMQ 103 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTE----QRVINRMLKLALEGYSDAWKAINPL 175 + + + + GGDG+ V E + E Q +N+M+ A + + + Sbjct: 104 TTDAAVIANLMMGGDGQ----VNTSELSEIEVSAVQEAMNQMIGSAATSMATMFAREVNI 159 Query: 176 EV--EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLV 232 + +M + T ++ +V F + I L LP + + + +++ Sbjct: 160 SPPKSKIWKDMNENISE-TIPEDEPIVEVCFDLTIEGLLQSNMMQILPINTAKKIVSIMM 218 Query: 233 NPPLENSRNED-------------------------QNWRDNLVRQ-------------- 253 E + D + N+V + Sbjct: 219 GEDQEVANEIDDSYDSSDIYKEEYNIEEKPIINTVEERAVKNIVEKPVEVHGATFEPLSQ 278 Query: 254 ------------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGV 299 + LE+ + IL L+ G ++ ++K + + ++G Sbjct: 279 GVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVEVLINGK 338 Query: 300 PVLTSQYGTLNGQYALRIEHLIN 322 + + ++ + +RI +++ Sbjct: 339 KIAYGEVVVVDENFGVRITSIVS 361 >UniRef50_Q98HE6 Flagellar motor switch protein; FliM n=2 Tax=Mesorhizobium RepID=Q98HE6_RHILO Length = 315 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 12/282 (4%) Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 + ER A + L + L + + A+ + E + ++ + Sbjct: 35 MAERAAPLLQKSLTSELGVPVTVDLRAVEVSRVAEARSRAGDTFAMTIVASSTSSDAMTL 94 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 V + I V LFGGD P R+ + E V + + + + + + L Sbjct: 95 VIDAPAIAIMVCTLFGGDPETPASPIERDLSQIEVDVSTMLFQQVAQALNGSGRRSLDLR 154 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + R+ + + + +G + +P R +L + Sbjct: 155 LPVPRAMSGTEAKRHVLRDG-AALRIVLGISTPADSGTVTVTMPQ------RIVLASRDS 207 Query: 237 ENSRNED---QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DR 291 S D +WR+ +V S + L A L L + L G V+ ++ R Sbjct: 208 AASTAGDDHGPSWRERFSEEVMRSTVALEATMPLARLTLGDLASLEVGQVIDFDETAQSR 267 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQP 333 G + ++G L Y +RI H + + ++ P Sbjct: 268 ARLSARGQTLFVCEFGKLGQNYTVRIRHPFDAGQDFIDGLMP 309 >UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmicutes RepID=Q0AYM4_SYNWW Length = 398 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 27/269 (10%) Query: 1 MGDSILSQAEIDALLNGDSEVKD--EPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D ILSQ EIDALL G S V D ++ S I D L + Sbjct: 1 MNDGILSQEEIDALLTGSSPVTDTIGSSSDPVSTSSINLSDFEKD---------TLGEVG 51 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVV 117 L LLR+ IT + + E P+P + + + + + GT ++V Sbjct: 52 NISMGTAATTLSTLLRKKVSITTPDVSVTNPEELQLLYPLPFLVVEVSYTQGVTGTNVLV 111 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAIN 173 I D + GGDG EG+ E +N+M+ A S + Sbjct: 112 IKEEDAAIIADLMMGGDGLSA---EGKNLGDLELSAVGEAMNQMMGSATTSLSSMFNQRI 168 Query: 174 PL-EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELL 231 + + +M +F ++TS +D VV F +EI N + E +P +E + +L Sbjct: 169 DIAPPQLTVIDMGKEFLQLSTSFDD-VVKIKFKMEIENLINSEIMQIIPMEAVENIMSIL 227 Query: 232 VNPPLENSRNEDQNWRDNLVRQVQHSQLE 260 + S E+ + + + L Sbjct: 228 L-----GSTAEESSAEAVMEEPLVGMPLP 251 >UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobacillales RepID=A8U602_9LACT Length = 360 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 67/373 (17%), Positives = 124/373 (33%), Gaps = 73/373 (19%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M L+Q EIDA+LNG S EPT + + + ++ + I Sbjct: 1 MSSEKLTQEEIDAMLNG-SASTPEPTPT---------------DTLDQTQVDIIGEIGNI 44 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK-PLRGTGLVVFS 119 L ++L IT + + E P + I K L G+ L++ + Sbjct: 45 SMSQAATTLSDILNHRVTITTPVVSTLKFQEIIDASVTPKVVTTIEFKKGLEGSNLLMMN 104 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV----INRMLKLALEGYSDAWK---AI 172 I D + GDG E +EFT E +N+M+ A + + I Sbjct: 105 ERDAIIIADLMMDGDGNP----ENKEFTELELSAVGEAMNQMMGSAATAMATMLERIVDI 160 Query: 173 NPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIE------ 225 P +VE + + V + I S + +V F + +G+ + E + Sbjct: 161 LPPDVEVWKDQNNVTYDRI--SGDTMVCKIAFQMTVGDFIESEIMQVFTLDTVRNISKIV 218 Query: 226 -------------PLRELLVNPPLENSRNEDQNWRDNLVRQ------------------- 253 P E + P + Q + Q Sbjct: 219 LADEGEVIQDRQLPQAEEMTAPIAPAANQPTQETAGKIGIQKPEFQELTHAGSLKTPRNL 278 Query: 254 --VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTL 309 + L+ + + IL L G V+ + K + + +V+G + + + Sbjct: 279 DLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVI 338 Query: 310 NGQYALRIEHLIN 322 N + +RI ++++ Sbjct: 339 NESFGIRITNILS 351 >UniRef50_Q44457 Flagellar motor switch protein fliM n=11 Tax=Rhizobium/Agrobacterium group RepID=FLIM_AGRT5 Length = 321 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 18/279 (6%) Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 ++ + + D+ + N+ + L+ ++ Sbjct: 45 YSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIANVGQNVAVADCSLRNWCPNFMMAVGN 104 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 V ++ + G + R +H E + +L A E Sbjct: 105 GFVIALMERMLGASPDSIGDPDERNLSHIELDLAAMVLGRIAGVLRSGVNAPGGFEATID 164 Query: 181 RSEMQVKFTNITTSPNDIV-----VNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 N ++ ++++ V ++IG ++ EF++ +P PL + + P Sbjct: 165 ----PPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSEFSLIVPQ---RPLLKTSIVAP 217 Query: 236 LENSRN--EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDR 291 +++ + + W D + +QV+ SQ+ L A +L L I +L GDV+P + K D Sbjct: 218 KASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTISRLVAGDVIPFQDLKQDD 277 Query: 292 IIAHV--DGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 I V +G + ++G +Y +R+++ ++ L Sbjct: 278 IGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEIL 316 >UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion protein n=2 Tax=Exiguobacterium RepID=B1YI92_EXIS2 Length = 376 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 63/381 (16%), Positives = 126/381 (33%), Gaps = 72/381 (18%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EIDALL G ++ ++ D + + + AL + Sbjct: 1 MSD-MLSQDEIDALLRGTPSAEEPADTHLTD-------DLHQLDEM---EIDALGEVGNI 49 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 + L LL + +IT +R+ E P+P L + + + +G +++ + Sbjct: 50 SLGNSATALSALLNQKVEITTPHVRMITMEELRSRYPIPHVALRVGYTEGFKGENVLILT 109 Query: 120 PSLVFIAVDNLFGGDG--RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 + + + GGDG ++E + Q +N+M+ A S + + Sbjct: 110 QRDASVIANLMMGGDGVVDESLEMEPIALSAV-QEAMNQMMGAAATSMSTVFSMRIDISP 168 Query: 178 EYVRSEMQVKFTNITTSPN--DIVVNTPFHVEIGNLT-------GEFNI----------- 217 V + I S + + +V F ++IG L + Sbjct: 169 PAVEIFDFSQEKTIVDSFSLWESMVIIEFDLKIGTLIDSKIVQLAPLDFSKQLIQKLFSA 228 Query: 218 ---------CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQL--------- 259 P S EP+RE P + + + V S + Sbjct: 229 STTTTESAPIAPTSSQEPVREQ-PTAPQQQPEPRYEAPPEQKKEPVGVSPVQFGQFSEVQ 287 Query: 260 ----------------ELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPV 301 + + IL+L G ++ ++K + + V+ + Sbjct: 288 QEGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLI 347 Query: 302 LTSQYGTLNGQYALRIEHLIN 322 T + + + +RI ++N Sbjct: 348 ATGEVVVIEENFGVRITEIVN 368 >UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Thermotogaceae RepID=A6LMJ7_THEM4 Length = 370 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 132/383 (34%), Gaps = 82/383 (21%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MGD LSQ E+D+LL+ E ++E T I Sbjct: 2 MGDEQFLSQEELDSLLSQIDESQNELTDLEKD---------------------MFGEIGN 40 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLP-VPTNLNLIHLKPLRGTGLVVF 118 L LL R DITV A+ I+ E + +++ + G +V Sbjct: 41 IIMGSGTTALSTLLGRKVDITVPAVEIKKLKEIREEVKGKNAVVSINFKGEIEGLNALVL 100 Query: 119 SPSLVFIAVDNLFGGDGR-FPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 V + + GGDG +V+ + + +N+M+ A SD K + Sbjct: 101 PQMAVARIANIMMGGDGNVETDEVDEISLSAVSEA-MNQMMGAAATSLSDMLKKTVDITP 159 Query: 178 EYVRS----EMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLV 232 V E VKF + ++ +DIV F +EI L +F + + ++ L LL Sbjct: 160 PTVELLDFDEEDVKFPPVVSNDDDIVAKVNFKLEIEGLEPADFFLTMSPPFVKKLYRLLF 219 Query: 233 --------------------NPPLENSRNEDQNWRDNLVRQ------------------- 253 P EN ++ +N+ + Sbjct: 220 GEEKKQASPQQQAQPSTPQQAPTTENENIQNVKMSENIQKNPVSVSPVQFQSFESGGIVK 279 Query: 254 -----------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVP 300 + L +V L L Q+++L+ G ++ ++K + + V+G Sbjct: 280 STSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKL 339 Query: 301 VLTSQYGTLNGQYALRIEHLINP 323 + + ++ + +RI +++P Sbjct: 340 IARGEVVVIDENFGVRITEIVSP 362 >UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ5_HALOH Length = 375 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 61/386 (15%), Positives = 121/386 (31%), Gaps = 91/386 (23%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 ILSQ EIDAL++ E +E T L I Sbjct: 8 DILSQEEIDALMDNSDEDSNELTHEERD---------------------VLGEIGNIAMG 46 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIH-LKPLRGTGLVVFSPSL 122 L +L + +IT + + + E ++ P L + + L G L++ Sbjct: 47 SAATALSTILDQKVEITTPKVEVVTFKELSQEYERPCVLVRVKYISGLEGINLLIIKEED 106 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIN------RMLKLALEGYSDAWKAINPLE 176 + D + GGDG K++ + + + + L I+P E Sbjct: 107 AMVIADLMMGGDGTSDEKLDEIHLSAIGEAMNQMMGSSSTSMSSILNEVV----NISPPE 162 Query: 177 VEYVRS-EMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNP 234 +Y+ E+ K S ++ VV+ F +++G+ + F P + L LV Sbjct: 163 TKYLDIDELNGKREKYLGSDDEKVVSISFRLKVGDLIDSSFKQIAPMGFTKQLAVKLVEE 222 Query: 235 PLENSRNEDQNWRDNLVRQVQHS------------------------------------- 257 + + + + + V + Sbjct: 223 MGGLTAKDAEEEKGEARKTVAATASTGSASTTGQPVSGSANRVSAGEENVDVKRAQFPSF 282 Query: 258 ----------------QLEL--VANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 + L + + QIL L G ++ +EK + + V+ Sbjct: 283 DNGNTAPLPQNMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVDLLVN 342 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINP 323 G + + ++ + R++ +I+P Sbjct: 343 GKLIAKGEVVVIDENFGFRVKDIISP 368 >UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion protein n=5 Tax=Thermoanaerobacterales RepID=B0K9T5_THEP3 Length = 375 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 63/384 (16%), Positives = 124/384 (32%), Gaps = 80/384 (20%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D LSQ EI+ALL G +E E + E + E L I Sbjct: 1 MND-FLSQEEINALLKGLTEESKENQSQSGKE-------------LTEEEQDILGEIGNI 46 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVFS 119 L+ LLR IT + + + E + +P + + + + L+G L++ Sbjct: 47 SFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNIPYIGVEVEYTEGLKGHNLLILK 106 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 V D + GG+G KVE E T I + + + + + + Sbjct: 107 KEDVLKMTDLMMGGEG----KVEDGEITDLHLSAIGEAMNQMIGSAATSLSTLLNKTINI 162 Query: 180 -----VRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELL-- 231 + + P VV F +E+G + E LP + L + + Sbjct: 163 SPPKAFVVDFTASLPTDISFPEGDVVKIAFKMEVGEIIDSEIMQLLPLDFAKELVQSVLS 222 Query: 232 -----------------------------------------------VNPPLENSRNEDQ 244 V+P + S +ED Sbjct: 223 KNEEKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDS 282 Query: 245 NWRDNLVRQ----VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDG 298 + + ++ + L + + IL+L+ G ++ ++K + + +G Sbjct: 283 SSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANG 342 Query: 299 VPVLTSQYGTLNGQYALRIEHLIN 322 + + ++ + +RI +++ Sbjct: 343 KYIAKGEVVVIDENFGVRIIDIVH 366 >UniRef50_C6XFK7 Flagellar C-ring protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFK7_LIBAP Length = 318 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 99/296 (33%), Gaps = 15/296 (5%) Query: 39 DPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPV 98 D T ++ +L + ++F + DI+ + + + + Sbjct: 27 DKKTIEKISS----SLGYLYKKF---LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 Query: 99 PTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRML 158 + L + S +LV ++NL G ++ R + E+++ R + Sbjct: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 Query: 159 KLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTS--PNDIVVNTPFHVEIGNLTGEFN 216 + + + T+ N+ V ++ I N+ F Sbjct: 140 AQISAVLNQCISTTQESSPNLEDF-YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 Query: 217 ICLPFSMIEPLRELLVN-PPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQI 275 + +P + L+ L++ S N+ ++ D R+ + + L + Sbjct: 199 LIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 Query: 276 LKLNPGDVLPIEKPDR--IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 + L G V+P ++ I +G + + + G + Y +RI IN SL Sbjct: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 >UniRef50_O54246 Flagellar motor switch protein fliM n=3 Tax=Rhizobiaceae RepID=FLIM_RHIME Length = 315 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 86/262 (32%), Gaps = 4/262 (1%) Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 F L + I R +E L L + L+ V Sbjct: 41 FDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDS 100 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 ++ V+ L G + + R + E V + E A A E Sbjct: 101 PVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVG 160 Query: 181 RSEMQVKFTNITTSPNDIVVN-TPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 R + D+ + +G + F++ +P S + R ++ Sbjct: 161 RPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLSTFSVIVPQSTLLKTR-VVSRKGAGED 219 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVD 297 RN W + L QV+ S + L A SL L + +L GDV+P + R+ + Sbjct: 220 RNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSAN 279 Query: 298 GVPVLTSQYGTLNGQYALRIEH 319 G + ++G +Y +R++ Sbjct: 280 GRDLYVCEFGRSGSRYTVRVKD 301 >UniRef50_Q11LL7 Surface presentation of antigens (SPOA) protein n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LL7_MESSB Length = 311 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 86/282 (30%), Gaps = 16/282 (5%) Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 +++L ++ + F F L + + + + E L +I Sbjct: 38 MRSLPVLQDIFQAKFSAPLV--------LDIAGVEVVRLAELKPEPDSFDALVVIPATDS 89 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY-SDAW 169 R + + + V L GGD P R + E V + + Sbjct: 90 RDALTMRLDAQALSLLVSILLGGDPDIPPSPLDRPPSRIELDVARLVFGAFAQALNGTGS 149 Query: 170 KAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRE 229 +++ F + F + G ++G LP +I Sbjct: 150 RSLGLRLPAPQPLAGPGDFKRFLVRDGPG-IRIAFSLGAGPVSGILTAWLPHRIIL---- 204 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--E 287 P E+ W+ +V+ S +++ A L L + L PG VL + Sbjct: 205 KARAPAAEDDSPAHTQWKQRFGEEVRRSTVQVTATIPLTKLPLGALANLKPGQVLELQEN 264 Query: 288 KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 P V PV ++G L Y +RI + L+ Sbjct: 265 APRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDDRQAVLD 306 >UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Bacillales RepID=A7GNF7_BACCN Length = 554 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 62/348 (17%), Positives = 134/348 (38%), Gaps = 48/348 (13%) Query: 15 LNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLR 74 L+G E + +P Q ++ +E L I L LL Sbjct: 214 LSGGGEQELIEEVQEEENKQELVEEPPFQEKLTQEEKDVLGEIANISIGSASTVLSTLLN 273 Query: 75 RSPDITVGAIRIQ--PYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLF 131 + I+ + Y++ +PVP LN+ ++ L+ + VF+ + VD + Sbjct: 274 QPVSISTPNVETIDVRYYD---GVPVPFVILNVDFVEGLKSENVFVFTKDVALTMVDLMM 330 Query: 132 GGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAW---KAINPLEVEYVRSEM 184 G G ++ E T E ++N+M+ A S+ + I P V++V + Sbjct: 331 MGTGEIDSEQ---ELTEMELSGVKEIMNQMMGHAATAMSEMFMEKMDITPPTVKFVTLKE 387 Query: 185 QVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVN-------PPL 236 ++++ + +D +V F++EIG+ + + LP S + + + L++ Sbjct: 388 EMEYLG-KEADSDELVQITFNLEIGDLVQSKMYQILPLSEAKEMVKRLLHVDVEESIELE 446 Query: 237 ENSRNEDQNWRD------------NLVRQ---------VQHSQLELVANFADISLRLSQI 275 E + +++N + + +Q+ ++ + F + I Sbjct: 447 EEASIKEENVEEIPEPAVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDI 506 Query: 276 LKLNPGD--VLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 L L+ D VL E + I +V+ V V + ++G + +++ + Sbjct: 507 LSLHENDAVVLDEEVDEPIRIYVNNVLVAYGELVNVDGFFGVKVTKSL 554 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 4/158 (2%) Query: 55 EIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTG 114 EI N F L +L R IT + + ++ LN+ K L Sbjct: 32 EIANISFG-SASTVLSTILNRQVSITTPHVEVVDLYDTRDIEVPHVVLNIQFTKGLDMEN 90 Query: 115 LVVFSPSLVFIAVDNLFGGDGRF-PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 L+V + D + G G K G Q +N+M+ A S+ ++ Sbjct: 91 LLVLQQDVALAIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQDTV 150 Query: 174 PLE-VEYVRSEMQVKFTNI-TTSPNDIVVNTPFHVEIG 209 + ++ + I ++ ++ F ++I Sbjct: 151 DMSPPTIKVVKLFEEIEKISGVDESNTIIKVSFDLKID 188 >UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion protein n=4 Tax=Bacteria RepID=B8FTQ8_DESHD Length = 417 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 95/241 (39%), Gaps = 27/241 (11%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MG+ +LSQ EIDALL G+ + + E + R + + + Sbjct: 1 MGNGMLSQEEIDALLGGNQQTDPPAQKEPAVE-------FSDMERDAIGEIANISM---- 49 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK-PLRGTGLVVFS 119 L LL + +IT + + + ++ P+P+ + + K + G+ L++ S Sbjct: 50 --GTAATTLSQLLGKKVEITTPKVDMASAEQIRKDYPIPSVIVDVRYKAGIEGSNLLILS 107 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPL 175 + VD + GG G P E + +N+M+ A S + ++ + Sbjct: 108 QRDGAVIVDLMMGGTGENPPT----ELSELSISGISEAMNQMMGSAATSMSTMFNSVVDI 163 Query: 176 E-VEYVRSEMQVKFTNITTS---PNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLREL 230 + V ++M + +I T+ ++ +V F + + ++ +P + + + Sbjct: 164 TPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMVVEDVIDSILVQVIPIHVAKGMVGK 223 Query: 231 L 231 L Sbjct: 224 L 224 Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + +IL+L PG V+ +++ + + V+G + + +N Sbjct: 335 ILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKCEVVVINE 394 Query: 312 QYALRIEHLINPI 324 + +RI ++ P Sbjct: 395 TFGIRITDIVQPG 407 >UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF88_BREBN Length = 455 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 16/240 (6%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M +LSQ EIDALL ++ V+DE A + D+ + E+ EI N Sbjct: 1 MSRDMLSQDEIDALLRANNLVEDEEEAVSAVTQDVAEF------LSPFEQDALGEIGNIS 54 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 F L LL + DIT + + E P+P +++ + +G L+V Sbjct: 55 FG-SAATALSTLLSQKVDITTPTVSVVNVDELESEFPIPHVAVHVEYTDGFKGINLLVIR 113 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 + D + GGDGR + Q +N+M+ A S + + Sbjct: 114 MEDAAVIADLMMGGDGRPASTEMSELHISAVQEAMNQMMGSAATSMSTIFNQFINITPPG 173 Query: 180 VRSEMQVKFTNITTSPND---IVVNTPFHVEIGNL----TGEFNICLPFSMIEPLRELLV 232 + M + S +D +V F +++G LP S + + + LV Sbjct: 174 IDV-MDLAQGKGGDSFSDDDSPLVKVSFRLKVGEHGELIDSNIMQLLPLSFAKKMIDRLV 232 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + +IL L+ G ++ ++K + + V+ + + ++ Sbjct: 376 LHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVVVIDE 435 Query: 312 QYALRIEHLINPIL 325 + +R+ +I+ I Sbjct: 436 NFGVRVTDIISQID 449 >UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Thermotoga RepID=A8F896_THELT Length = 343 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 51/359 (14%), Positives = 125/359 (34%), Gaps = 65/359 (18%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M L+Q E++ LL G S+ E E D Sbjct: 1 MNSDFLTQDELNELLKGLSDTLSEHDQEAIKEISNLIID--------------------- 39 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 L ++ R +T+ I + + + + + L+G L++F Sbjct: 40 ---SSTAALGIVIGREVKVTLVEISQKTLKDLLSSFDETIVAVQIEFSDGLKGEFLILFP 96 Query: 120 PSLVFIAVDNLFGGDGRFPT-KVEGREFTHTEQRVINRMLKLALEGYSDAWK---AINPL 175 SL D + GG G + +++ + + +N+M+ + S+ K +I+ L Sbjct: 97 QSLGARIADMMMGGSGEPESFELDEVRLSAITET-MNQMMGSSTTSLSEQTKKKVSISKL 155 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMI---------- 224 +V+ V+ + + + + ++ + +++ N + + P Sbjct: 156 KVDLVKKDEEP---VLNFNLAQVLAYVAYEIDLENSHKSKILLIAPALFFKDIYKIIHPA 212 Query: 225 ------------------EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 +P++ + + + + D L + L++V Sbjct: 213 QEPEKEKEQKREEEKVKVQPVQFQEFDQSQRAAVSTPSEFSDKLEL-LLDVPLKVVVELG 271 Query: 267 DISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 + L Q+L++N G ++ ++K + + V+G + + ++ + +RI ++ P Sbjct: 272 RAKMTLKQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTP 330 >UniRef50_A4J3G9 CheC, inhibitor of MCP methylation n=2 Tax=Desulfotomaculum RepID=A4J3G9_DESRM Length = 333 Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 64/356 (17%), Positives = 121/356 (33%), Gaps = 53/356 (14%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + +L+Q EID L E + A + + L + I Sbjct: 1 MSEKVLTQKEIDELFARYEEQPIKQEAK---------------DLLNMQELDIIGEIGNI 45 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL-KPLRGTGLVVFS 119 L LL + I I + E + P + + + L G ++V + Sbjct: 46 CMGTAATTLSQLLSQRVIIGYPKIIVCQQDEVFGSFSTPYLIIEVQFKEGLNGFNVLVIN 105 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWK---AI 172 + I D + GG+G+ V T E +N+M+ + +D + I Sbjct: 106 EEEIAIIADIMMGGNGQVTKPVM---ITEMELSASTEAMNQMIGSSATAMADLFGIGIDI 162 Query: 173 NPLEVEYVRSEMQVKFTNITTSPNDI-VVNTPFHVEIGNLTGEFNICLPFSMIEPLRE-- 229 P + V + + T P D VV F + IG++ + + ++ R+ Sbjct: 163 APPKATMVEDLLN---ASHTPLPTDKPVVVARFEITIGDIIKTTF--MQITNVDAARDQA 217 Query: 230 --LLVNPPLENSRNEDQNWRDN-LVRQVQHS---------------QLELVANFADISLR 271 LL+ ++ N ++ D +++ + ++L + I Sbjct: 218 NYLLMKAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLGKIRCT 277 Query: 272 LSQILKLNPGDVLPIE-KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + KL GD L I +I V G+PV + T + ++I L + Sbjct: 278 AGDLAKLKKGDTLAIPFSSQQIKLLVGGIPVALGELQTHAEETKIKISRLYQKSIK 333 >UniRef50_A9CYK4 Flagellar motor switch transmembrane protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CYK4_9RHIZ Length = 315 Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 18/229 (7%) Query: 107 LKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYS 166 ++ + LV V+ L GG + R + E + + + + Sbjct: 90 IEGWSRDISALCGTKLVIAMVECLLGGSDPEELDIAARPLSGIELDMSLVVFEQLNDTLR 149 Query: 167 D-------AWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICL 219 + A ++ +E K P+ ++ G++ + L Sbjct: 150 EVASKDPTAKAGAGKPMLDIPEAEDDPK-------PDFHAAAITLELQFGSVVTPLTLIL 202 Query: 220 PFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLN 279 P S++ L+ + D +W + L +V SQ+ L A A L + +I +L Sbjct: 203 PQSIL--LKTKPITSKKNAPNAVDDDWAERLNARVSRSQINLQAAVALAPLPVGEISRLQ 260 Query: 280 PGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 GD++ + + +G + T G +Y +++E P N Sbjct: 261 VGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVEGDAGPDEN 309 >UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax=Bacteria RepID=C4Z5H2_EUBE2 Length = 437 Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 21/256 (8%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRP--------YDPNTQRRVVRERLQAL 54 D +LSQ EI+ALL+G D+ ++ + P + + + + Sbjct: 2 DGMLSQDEINALLSGMGSGGDDAESTGTATVTDTPDNNSAEDSFTLTESEKDAVGEISNI 61 Query: 55 EIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-LIHLKPLRGT 113 + L +LL + +IT + + + + +R P + + + + L G Sbjct: 62 SM------GTAATTLSSLLSQKVNITTPKVEVATWDDLSREYDRPCVMMQISYKEGLAGN 115 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE--FTHTEQRVINRMLKLALEGYSDAWKA 171 +++ + V I D + GG G E + + +N+M+ A S + Sbjct: 116 NVLILKENDVKIITDLMMGGTGTANPDEPLSELHLSAIGEA-MNQMMGSAATSMSSMFNR 174 Query: 172 INPLEVEYVR-SEMQVKFTNITTS-PNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLR 228 + E + + N V F ++IG+ + E P + L Sbjct: 175 KIDISPPVANLVETYNELDEGMPAFLNKPFVKVAFKMQIGDLIDSEIMQLYPKEFAQELL 234 Query: 229 ELLVNPPLENSRNEDQ 244 + ++S ++ Q Sbjct: 235 NMFTPSSDDSSNSQPQ 250 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 ++ LE+ + + IL+ PG ++ + K + + V+G V + + Sbjct: 367 IKDVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEE 426 Query: 312 QYALRIEHLIN 322 + +RI +I Sbjct: 427 SFGVRITEIIK 437 >UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion protein n=15 Tax=Bacteria RepID=C6D2V9_PAESJ Length = 421 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 15/235 (6%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 LSQ EIDALLN + E +S S S+ + D + E+ EI N F Sbjct: 3 SKDYLSQEEIDALLNQTAS---ELASSQSQASEYQLSDFLSPI----EQDALGEIGNITF 55 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSP 120 L LL + DIT + + A P P +++ ++ +G +V Sbjct: 56 G-SAATALSTLLGKKVDITTPQVTFIKREDLANEFPKPHVAVSVQYVDGFQGINSLVIKT 114 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK---AINPLEV 177 + D + GG+G + Q +N+M+ + S + I+P + Sbjct: 115 KDAQVIADLMLGGEGDVTLQELNEIHISAVQEAMNQMMGSSATSMSTIFNRFVNISPPGI 174 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELL 231 + + + + D+ + F + IG+ + LP + + +L Sbjct: 175 DILDVDSGGGMGQL--PTEDVFIKISFRLTIGDLIDSTIMQLLPVPFAKQMVAIL 227 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ ++ IL+L+ G ++ ++K + + V+ + + ++ Sbjct: 342 LLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE 401 Query: 312 QYALRIEHLIN 322 + +R+ +++ Sbjct: 402 NFGVRVTDIVS 412 >UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clostridia RepID=A6TRP4_ALKMQ Length = 393 Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 101/283 (35%), Gaps = 35/283 (12%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EIDALL+G++ + G + V + + + Sbjct: 1 MSD-MLSQEEIDALLSGNANTPSDNDGIDEG--------FTDDEKDVIGEVGNISM---- 47 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 L LL + IT + + + E A+ P+P +++ + + L G L++ Sbjct: 48 --GTAATTLSTLLGQKVKITTPRVSVLTFEEIAQEYPLPFVAVDVKYKEGLEGVNLLILR 105 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPL 175 V I D + GG+G + + +N+M+ + S+ + + Sbjct: 106 EKDVKIITDLMMGGEGVASEE----PLSELHLSAIGEAMNQMVGSSSTSLSEMFGKKIDI 161 Query: 176 EV------EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLR 228 + +F SP+ V F + IG + E +P + + Sbjct: 162 SPPHAFTLDLTSDVNAPEFIEHFQSPDKNFVRIAFRMVIGELIDSEIMQLIPLDFAKEIT 221 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLR 271 L L ++ ++ + + + H++ AN + + Sbjct: 222 STL----LRGAQYTEEMPSEEIPNERMHTEPIAHANSEENRIT 260 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 +Q L + ++S++L+ PG ++ +EK + + V+G V + ++ Sbjct: 315 IQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDE 374 Query: 312 QYALRIEHLINPI 324 Y +RI ++ P Sbjct: 375 NYGIRITDIVAPA 387 >UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSG7_BACS4 Length = 398 Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 14/251 (5%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EI+ALLNG + +D+ ES I D + E+ EI N Sbjct: 1 MSD-MLSQEEINALLNGINLDEDDKDTEEKQESTINIEDYLS----SIEQDALGEIGNIS 55 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 F L LL + DIT + I E + P P +++ + G L+V Sbjct: 56 FGSS-ATALSTLLNQKVDITTPRVSIVKSSELDQQFPKPHIAVSVQYTVGFEGMNLLVIK 114 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK---AINPLE 176 + I D + G DG + G Q +N+M+ A S + I+P + Sbjct: 115 NTDAAIIADLMLGNDGTNAGEELGEMQISAVQEAMNQMMGSASTSMSQIFNKRVDISPPD 174 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNP- 234 VE + + +T +D+++ F +++G + + + + + + L+NP Sbjct: 175 VEQLNLKEDPD--KVTFPDDDVMLQISFDLKVGTLIDSKIMQLVSVEFAKDMVDQLLNPE 232 Query: 235 PLENSRNEDQN 245 P+E+ +D N Sbjct: 233 PIEDITEKDAN 243 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 27/287 (9%), Positives = 89/287 (31%), Gaps = 51/287 (17%) Query: 50 RLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK- 108 ++ A++ + + + + DI+ + E + P + ++ + Sbjct: 141 QISAVQEAMNQMMGSASTSMSQIFNKRVDISPPDVEQLNLKEDPDKVTFPDDDVMLQISF 200 Query: 109 ------PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLAL 162 + + + S VD L + T + V + ++ + Sbjct: 201 DLKVGTLIDSKIMQLVSVEFAKDMVDQLL-------NPEPIEDITEKDANVNTQPVEETV 253 Query: 163 EGYSDAW-----KAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNI 217 A+ + ++ + + +F + + + + + E Sbjct: 254 TQ--QAFPQTNEQPQMDATNQHQSARQEPQFVSNGS-------------RLPDRSAEVQ- 297 Query: 218 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 277 P + P L N+ ++ + + LE+ + IL+ Sbjct: 298 --PAAF-----SNFETPQLGNNEAKN-------LDMLLDIPLEVTVELGRTKRSIKDILE 343 Query: 278 LNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 L G ++ ++K + + V+ + + ++ + +R+ +++ Sbjct: 344 LTQGSIIELDKLAGEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVS 390 >UniRef50_B9T9Y1 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9T9Y1_RICCO Length = 104 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 52/97 (53%) Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 MIEP+RE L + + D+ W +L V + + + A+ + L I+ L PGD Sbjct: 1 MIEPIRETLDAGMQSDVDDIDERWVRSLREDVMSASVVVNGTIAEKDVALRDIIDLEPGD 60 Query: 283 VLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 V+P++ ++I+ +GVP++ ++ G G AL+I Sbjct: 61 VIPVDLGEKIVLTANGVPIMYARLGQSRGNLALQILE 97 >UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion protein n=3 Tax=Clostridiales RepID=C7ILI0_9CLOT Length = 400 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 99/247 (40%), Gaps = 31/247 (12%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MGD +L+QAEIDALLNG S ++ A+ S + + + + AL I Sbjct: 1 MGD-MLTQAEIDALLNGTSSSEEPDEATGSNSNT---------ETLTSQEIDALGEIGNI 50 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 LF LL + IT + + + E +++ + + + L G+ L++ Sbjct: 51 SMGTSATTLFTLLSQKVTITTPNVTLSTWEELSKSYSSQYVAVKVEYTDGLIGSNLLILK 110 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPL 175 V I D + GG+G K+EG + T +N+M+ + S + + Sbjct: 111 QDDVKIITDLMMGGEG---VKIEG-DLTDLHLSAISEAMNQMIGSSATSMSSMFSKRIDI 166 Query: 176 EV------EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLR 228 + S+ +F P++ +V F + +GN + E LP + L Sbjct: 167 SPPKAYTVSFDSSDPYGEF-----RPDEYLVKIAFKMVVGNLIDSEIMQLLPIKFAKELV 221 Query: 229 ELLVNPP 235 L+N Sbjct: 222 SSLLNST 228 Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + IL+ G V+ ++K + + V+G + + ++ Sbjct: 325 IMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDE 384 Query: 312 QYALRIEHLINP 323 + +RI +I+P Sbjct: 385 SFGVRITDIIHP 396 >UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicutes RepID=A4IMA6_GEOTN Length = 393 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 20/250 (8%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EIDALL G + P +D T E+ EI N Sbjct: 1 MNDGMLSQDEIDALLRGMDDSDHVPA----------LHDIFTP----LEQDAIGEIGNIS 46 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 F L LL + +IT ++ + A P P + + + + GT L+V Sbjct: 47 FGSS-ATALSTLLNQKVEITTPSVSVVERKRVADEFPRPYVAIQVNYTEGFLGTNLLVIE 105 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE-VE 178 + D + GGDG G Q +N+M+ A S + + Sbjct: 106 QQDAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPT 165 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELL--VNPP 235 ++ D + F ++IG + LP + L L + Sbjct: 166 LHLLDLTEGKGLEYLPDEDFFIKVSFRLKIGALVDSNIMQLLPIDFAKELVTHLLGSSAE 225 Query: 236 LENSRNEDQN 245 + +++N Sbjct: 226 AAGTLEKEEN 235 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 87/286 (30%), Gaps = 46/286 (16%) Query: 50 RLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEF--ARNLPVPTNL--NLI 105 +L A++ + + + + DI+ + + E LP Sbjct: 132 QLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPTLHLLDLTEGKGLEYLPDEDFFIKVSF 191 Query: 106 HLKP---LRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLAL 162 LK + + + V +L G +E E Sbjct: 192 RLKIGALVDSNIMQLLPIDFAKELVTHLLGSSAEAAGTLEKEE----------------- 234 Query: 163 EGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVV---NTPFHVE-IGNLTGEFNIC 218 I+P V E + + +D V + F E +G + E Sbjct: 235 --------NIDPSSAGAVPRE-EPQPAPAYAHASDGVFSSAASRFTNETVGGRSKEEE-- 283 Query: 219 LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKL 278 S+ E + ++ R+ + + L++ + +IL+L Sbjct: 284 ---SVAERHIQAADFAEFDDPPLAATEARN--LELLFDVPLQVTVELGRTKRSVQEILQL 338 Query: 279 NPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + G ++ ++K + + V+ + + ++ + +RI +++ Sbjct: 339 SAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVRITDIVS 384 >UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clostridium thermocellum RepID=A3DCN7_CLOTH Length = 406 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 25/257 (9%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 + +LSQAEIDALLNG S +E ++ + + + AL I Sbjct: 2 EDMLSQAEIDALLNGSSSEGNEENSAN--------------EELTSQEIDALGEIGNISM 47 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL-PVPTNLNLIHLKPLRGTGLVVFSPS 121 L +LL + IT + + + E A+ + + + + L G L++ Sbjct: 48 GTSATTLNSLLGQRVVITTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKED 107 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPLE- 176 + D + GGDG + E T +N+M+ A S + + Sbjct: 108 DAKVITDLMMGGDGSN----KEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISP 163 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPP 235 + + D +V F + IG + + LP + + ++N Sbjct: 164 PKVFPMTLDAAVPEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSK 223 Query: 236 LENSRNEDQNWRDNLVR 252 E+++ ++ + Sbjct: 224 PEDNQVIEEVAASAVQE 240 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + + IL+ PG ++ ++K + + V+G + + ++ Sbjct: 331 IMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDE 390 Query: 312 QYALRIEHLINP 323 + +RI +++P Sbjct: 391 SFGVRITDILHP 402 >UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKB6_MOOTA Length = 395 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 12/249 (4%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MGD LSQ EIDALL G ++++ A + T + ++ L I Sbjct: 1 MGD-FLSQEEIDALLKGHTDIETAAPAEPEAAAAPEA----TLSDLEKD---TLGEIGNI 52 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL-KPLRGTGLVVFS 119 L +L + IT I+I E + VP L ++ + L+G+ L++ Sbjct: 53 SMGSAATALSQILNKRVLITTPTIKIMTPEELFASFQVPYVLVEVNFTEGLQGSNLLIIK 112 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK-AINPLEVE 178 S I D + GG G T + +N+M+ A + ++ ++ Sbjct: 113 VSDAAIIADLMMGGSGENVTPELDEIKSSAVAEAMNQMVGSAATSMATIFQRSVKITPPH 172 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPF-SMIEPLRELLVNPPL 236 + + +V F +EI + + +P + +R L+ + P Sbjct: 173 LTAVNFNNESYTSPWATAQSIVVVCFKMEIEGLVDSQIMQVMPMEIAKDEVRMLMGSEPA 232 Query: 237 ENSRNEDQN 245 + + Sbjct: 233 AGASTGAET 241 Score = 60.7 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ R+ IL L PG ++ +++ + + V+G P+ + +N Sbjct: 315 ILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEVVIVNE 374 Query: 312 QYALRIEHLINPI 324 + +RI H++ P Sbjct: 375 NFGVRITHILEPY 387 >UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion protein n=2 Tax=Bacteria RepID=A9KNE6_CLOPH Length = 401 Score = 88.0 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 86/272 (31%), Gaps = 37/272 (13%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQ EI+ALLNG E A + + + AL ++ Sbjct: 2 DGMLSQEEINALLNGMGTENVETAADLES--------------LTDSEIDALGEMSNISM 47 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPS 121 L +L+ + IT + + + P + + + L G ++V Sbjct: 48 GTAATTLSSLVNQKVTITTPKVCYAEWEDLLSAYDRPCVFIQIYYKDGLDGNNILVLKEK 107 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 V I D + GGDG + T I+ + + S + ++ +V+ Sbjct: 108 DVKIITDLMMGGDGLNSEG----DLTELHLSAISEAMNQMMGSASTSLSSMLEKKVDIT- 162 Query: 182 SEMQVKFTNITTSPNDI------------VVNTPFHVEIGN-LTGEFNICLPFSMIEPLR 228 +I P I V F + IG+ + E PF L Sbjct: 163 ----PPVASIVDIPEVIDGGDIAEFLKSRFVKVSFRMVIGDLVDSELMQLYPFDFARELY 218 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLE 260 E + + D + + V +E Sbjct: 219 EQFMKYTETETNAADGYSKPKKEKTVTPDPVE 250 Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 41/302 (13%) Query: 40 PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDIT--VGAIRIQP-------YH 90 N++ + L A+ + L ++L + DIT V +I P Sbjct: 122 LNSEGDLTELHLSAISEAMNQMMGSASTSLSSMLEKKVDITPPVASIVDIPEVIDGGDIA 181 Query: 91 EFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 150 EF ++ V + ++ + + ++ + ++T TE Sbjct: 182 EFLKSRFVKVSFRMVIGDLVDSELMQLYPFDFARELYEQFM-------------KYTETE 228 Query: 151 QRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTN-ITTSPNDIVVNTPFHVEIG 209 A +GYS K + + V + FT I + N + Sbjct: 229 TN--------AADGYSKP-KKEKTVTPDPVETSNNNSFTQDIGKNMNMQTPQMQPQMAQM 279 Query: 210 NLTGEFNICLPFSMIEPLRELLVN-------PPLENSRNEDQNWRDNLVRQVQHSQLELV 262 + +P ++ + + +V + + + LE+ Sbjct: 280 QGMSLQGMAMPGMSMQQVPQGMVQNVNIAPAQFQPFVNTGSPLLQTENIDLLLDVPLEVT 339 Query: 263 ANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 S + +IL PG ++ + + + I V+G V + + + +R+ + Sbjct: 340 VELGRTSKSIREILDFAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEAFGIRVTDI 399 Query: 321 IN 322 I Sbjct: 400 IK 401 >UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1I6_DESAS Length = 572 Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 57/330 (17%), Positives = 103/330 (31%), Gaps = 69/330 (20%) Query: 53 ALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLR 111 AL + L LL + IT I I E + +P + + + + + Sbjct: 243 ALGEVGNISTGSASTTLSALLNQRVQITSPRISILTETELLSSFELPFMTVKVQYTEGII 302 Query: 112 GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSD 167 G L V + I D + GG+G + E T E +N+M+ A + Sbjct: 303 GFNLWVVTLRDALIIADLMMGGEGIPASN----EITELEISAASEAMNQMIGTAATSLAA 358 Query: 168 AWK---AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICL---- 219 + I+P E +R+ + I T P +V F + +G++ E + Sbjct: 359 IFNRIINISPPETHIIRARENLGEI-IDTHP---LVVISFRMIVGDVMDTEIMQIMSVET 414 Query: 220 -------------------------PFSMIEPLREL-------------------LVNPP 235 P EP+ V Sbjct: 415 AKYEVGLLLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEE 474 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRII 293 + D NW + + L + + +L L PG V+ + + + Sbjct: 475 RVSQTPADVNWDK--INLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVE 532 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 V+G V + +N + +RI ++I P Sbjct: 533 VLVNGTLVARGEVVVVNENFGVRITNVITP 562 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 103/285 (36%), Gaps = 28/285 (9%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 G +LSQ EIDALL+ + + E +R + + AL ++ Sbjct: 5 GGKLLSQEEIDALLSSSG----QTEPVIVEEQVLRS-----------DEIDALGEVSNIS 49 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL-PVPTNLNLIHLKPLRGTGLVVFSP 120 L +LL + I+ +I I EF + + + +K L G L + Sbjct: 50 MGTSSTTLSSLLNQQVQISGASISIMSEEEFMSSYRASYMAVRVQFVKGLSGFNLWLVKL 109 Query: 121 SLVFIAVDNLFGGDGRF-PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 + + + G +G ++ E + + +N+M+ ++ G + + + Sbjct: 110 HDALVMANLMMGVEGTPVTGEINELEISAASEA-MNQMISTSVTGLAGMFNRTIDISP-- 166 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEF--NICLPFSMIEPLRELLVNPPL 236 Q + N + ++VV PF V +T G+ + +E +E + + Sbjct: 167 ----PQTRIINEGDTLEELVVEGPFVVLFFKMTVGDMLDTEIIQIISVETAKEAVSSLMN 222 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLEL-VANFADISLRLSQILKLNP 280 + + + L Q + + E+ + S LS +L Sbjct: 223 AMDVSAGVSLENILESQEKDALGEVGNISTGSASTTLSALLNQRV 267 >UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF0_9FIRM Length = 541 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 39/323 (12%), Positives = 99/323 (30%), Gaps = 46/323 (14%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNL 104 + + + I L LL +IT I I + P P +N+ Sbjct: 216 ISADEGDTIAEIGNISMGAAATALSTLLDNRVNITTPRISITTLRQVREQYPQPCVVVNV 275 Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP-TKVEGREFTHTEQRVINRMLKLALE 163 + L G +++ + + G P +++ + + +N+M+ + Sbjct: 276 RYRTGLSGENVLIMGEQDAALIAAVMMGEPTDGPLGELDEIRLSAVSEA-MNQMMGSSST 334 Query: 164 GYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFS 222 ++ + + + ++T + +D +V F +E+ ++ + +P Sbjct: 335 ALAEMFSREVDITPPVTEYGNPAEEADLTVNIDDPMVQVSFRMEVADILDSDLIQLIPLK 394 Query: 223 M--------------------------------------IEPLRELLVNPPLENSRNED- 243 +EP+ L+ S E Sbjct: 395 FAREMAGVLLGAFAGEEENHDFAQETEPVVEPLLPNVEDVEPVMSTEPQDWLQESSPEST 454 Query: 244 -QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVP 300 R + ++ +E+ L L +++ G V+ + P + +G Sbjct: 455 LPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDILANGKL 514 Query: 301 VLTSQYGTLNGQYALRIEHLINP 323 V + N ++ ++I ++ Sbjct: 515 VARGEVVHYNERFGIKITEIMQD 537 Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 11/196 (5%) Query: 54 LEIINER---FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIH-LKP 109 L+ + E L NLL +IT + + PVP L + K Sbjct: 9 LDALAENGNIAMGAAATALSNLLGHRVEITTPTLTYTSMGKIREAYPVPCVLARVRYSKG 68 Query: 110 LRGTGLVVFSPSLVFIAVDNLFG-GDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 + G+ + + S + + + G D P ++ + + +N+M+ + S+ Sbjct: 69 IEGSNMFILSRCDAGVIANMMMGDADLPVPEVLDELYLSAISEA-MNQMMGSSATAMSEM 127 Query: 169 WKAINPLEV----EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSM 223 + + Q K +D V+ F + IG+ + LP Sbjct: 128 LGRLVDITPPDLTYVEDLSTQEKQIGEFALDSDEVIKVSFDLSIGDYVNSTMLQVLPLEF 187 Query: 224 IEPLRELLVNPPLENS 239 E + L+ + + Sbjct: 188 AENMVAELLGSFTDGT 203 >UniRef50_O67283 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67283_AQUAE Length = 182 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 76/199 (38%), Gaps = 25/199 (12%) Query: 130 LFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW-----KAINPLEVEYVRSEM 184 + GG+ P ++EG+ F+ E ++ ++ + + + W + + E+ E+ Sbjct: 2 MLGGE---PYELEGKPFSRLEMSMLTKLSESFCSTFREVWNEFFTRDVTDCELSENVYEL 58 Query: 185 QVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244 + +D VE L + P +++ ++E L R D Sbjct: 59 DL---------DDDHYVAELGVENETLKRSLFLAFPLYLLKEIKEELSM------RKPDP 103 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVL 302 R+ L+ + + L +L++++ + G V+ K + + V G Sbjct: 104 KEREELLSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGKTPQEEVEVLVQGRLKF 163 Query: 303 TSQYGTLNGQYALRIEHLI 321 G NG+ A++I ++ Sbjct: 164 LGILGEKNGKRAVKISKIL 182 >UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema pallidum RepID=B2S3V9_TREPS Length = 348 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 51/360 (14%), Positives = 119/360 (33%), Gaps = 54/360 (15%) Query: 1 MGDSILSQAEIDALLNG-DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D +SQAEIDALL+G + D P A S + + + L+ + Sbjct: 1 MSDGSISQAEIDALLSGVEMGAGDSPAAGASFSGG----------GLSSAQSELLQSFCQ 50 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK-PLRGTGLVVF 118 F L +L ++ I+ + I EF+R +P +I + G L + Sbjct: 51 ANVGSFCPSLESLTGKTVSISPPRVEISSKEEFSRVIPDMLVATVIDFEGEFAGDHLFLM 110 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P V+ + +++ + + + + L + + + V Sbjct: 111 APEFAQKLVNLV---SHEDNDQIDDMGLSVVSETITQYVSAQ-LSTLEA--RNVQNVSVA 164 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV------ 232 S K + P + V + VE+ + + ++ + E + Sbjct: 165 PAESVQVPK-AMVRFPPQRLCV-FTYTVELDGTSYTLWELVSEQLMVRIIERMGGAMQRP 222 Query: 233 NPPLENSRNEDQNWRDNLVRQ--------------------------VQHSQLELVANFA 266 + NS+ N + + + +E+ Sbjct: 223 QAQVGNSQMGGVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFMEVTVELG 282 Query: 267 DISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 + + IL + G ++ ++K + + V+ + + ++ + +R+ +++P Sbjct: 283 RTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDENFGVRVTEILSPG 342 >UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWF9_ALIAD Length = 381 Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 88/273 (32%), Gaps = 31/273 (11%) Query: 1 MGDS--ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D LSQAEIDALL + + + Q R+ + + L I Sbjct: 1 MVDDEMKLSQAEIDALLRAGAAEQAASR--------------DRQERLTADEIDVLGEIG 46 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL-KPLRGTGLVV 117 L +LL R DIT + I P E P P L + + L+GT + Sbjct: 47 NICFGSAATSLSSLLGRRVDITTPVVSILPRSEVESRFPTPYVLVQVDFTEGLQGTNALA 106 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAIN 173 D + G R P++ G E E +N+M+ A S + Sbjct: 107 IEIEDARRIADLMMG---REPSESTG-ELGELELSAVGEAMNQMMGSAATAMSQLFGRYI 162 Query: 174 PLEVEYVRSEMQ-VKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELL 231 + VR P + +VN F + + + +P P L Sbjct: 163 NISPPSVRVVTFTPDEAQAAFGPAEELVNVEFRLHVHELIDSHIMQLMPI----PFAREL 218 Query: 232 VNPPLENSRNEDQNWRDNLVRQVQHSQLELVAN 264 V ++ R+ R+ + + A Sbjct: 219 VRSMQVHTDAIVPEPREGDERRDGDAPVSAGAE 251 >UniRef50_Q87FY0 Lateral flagellar FliM-like motor switch protein n=14 Tax=Vibrio RepID=Q87FY0_VIBPA Length = 272 Score = 83.8 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 105/298 (35%), Gaps = 42/298 (14%) Query: 24 EPTASVSGESDIRPYD---PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRS-PDI 79 T SDI+P D ++R++L+ L I+E L N L + + Sbjct: 1 METRVSESISDIKPLDVELLGKPIHIIRDKLENL--ISES-CSSLTNELQNWLSTNKVEA 57 Query: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139 ++ ++ + + + + H G V + D +G + Sbjct: 58 SLTSVDLHRFSPAMMDKDQTST----HKHQEGGMVFVHGDTQTLVKLADRFYGANTERSV 113 Query: 140 KVEGREFTHTEQRVINRMLKLALEGY--SDAWKAINPLEVEYVRSEMQVKFTNITTSPND 197 T ++ R+ R+ ++ + D W+A EY +P Sbjct: 114 AT----LTASDLRLQERISRIIIGWLAPQDMWEA-----CEYE-------------APRG 151 Query: 198 IVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHS 257 I + ++ G + L +I+ L E L D + + R ++ + Sbjct: 152 IGLCVQLNITFEGYQGSMYLKLDTHLIQTLIEQL-------ELQSDVDLYEPFCRSLEST 204 Query: 258 QLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYAL 315 + L + ++ LS ++ L P D++PIE + + + P+ T + +GQ L Sbjct: 205 PVRLNVVLSKKTMALSDVVSLKPDDIMPIELLNTVPVSIGNQPLFTGRIAEQDGQLVL 262 >UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria RepID=A5D0K1_PELTS Length = 422 Score = 83.8 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 88/264 (33%), Gaps = 25/264 (9%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTA----SVSGESDIRPYDPNTQ------RRVVRER 50 M + +L Q EIDALLN P V ++ + E Sbjct: 1 MSNRLLKQEEIDALLNARLAEPALPEEGEYSGVQQPGGTGGNGAGSEQLGANVEMLTEEE 60 Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKP 109 AL I L LL ++ IT + I EF ++ +P + + + Sbjct: 61 KDALGEIGNICMGSAATTLSVLLNQTVSITSPRVTITTMEEFVKSFTIPHMTIYVRFTEG 120 Query: 110 LRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW 169 L G L+ + D + GGDG ++ + T + + + S + Sbjct: 121 LSGYNLLFMKLRDAAVMADLMMGGDGSQASE----DLTEISISAASEAMNQMIGTASTSM 176 Query: 170 K-------AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPF 221 I+P E V + + + + +V F + IGN+ + + Sbjct: 177 AAMIGRPVNISPPETRIVNKDNEAR--VFDLVQEEHIVVVWFKMTIGNILDTQIMQVMGI 234 Query: 222 SMIEPLRELLVNPPLENSRNEDQN 245 + + ++N L+ E+ + Sbjct: 235 NTAKEEANFILNRFLQVGSEEEPS 258 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + IL L PG V+ ++ + + V+GV V + +N Sbjct: 342 ILDIPLKVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNE 401 Query: 312 QYALRIEHLINP 323 + +RI +I P Sbjct: 402 NFGVRITSIIGP 413 >UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridiales RepID=C4ZAN3_EUBR3 Length = 404 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 94/249 (37%), Gaps = 25/249 (10%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQ EI+ALLN + E D A+ I Sbjct: 2 DGVLSQEEINALLNNNDAADSSDEILTESEKD------------------AIGEIANISM 43 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPS 121 LF+L+ R +I+ + + + P + + + + L G+ ++V Sbjct: 44 GTAATTLFSLVNRRVEISTPVVSFSNWDKIVDEYEKPCVFIKIGYTQGLNGSNILVLKEK 103 Query: 122 LVFIAVDNLFGGDG-RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK---AINPLEV 177 V I D + GGDG ++ + + +N+M+ + S I+P Sbjct: 104 DVKIITDLMMGGDGTNINGEIGELHLSAISEA-MNQMMGSSATSLSSMLNRTIDISPPIA 162 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPL 236 E V + + I + ++ V FH+EIG+ + E P + ++ + + + Sbjct: 163 EVVDLKNTLNEGEIDSFLSEEFVKISFHMEIGDLVDSEIMQLYPPAFVKEMCKGVSQNME 222 Query: 237 ENSRNEDQN 245 ++++ ++ Sbjct: 223 LDTQSVTED 231 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + LE+ +S+IL PG ++ + K + I V+G V + + Sbjct: 325 IMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEE 384 Query: 312 QYALRIEHLINPILNS 327 + +RI ++N +N+ Sbjct: 385 SFGVRITEIVNSKINT 400 >UniRef50_B1I5G4 CheC, inhibitor of MCP methylation n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5G4_DESAP Length = 369 Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 68/215 (31%), Gaps = 19/215 (8%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D IL Q EIDALL V + D L I Sbjct: 2 DKILDQEEIDALLKAGGAKAPGEREGVRKDPAGELTDVEKD---------TLGEIGNICM 52 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVFSPS 121 L LL + IT + ++P E + VP + + L G+ L+V Sbjct: 53 GSAATTLSALLGQKVSITSPVVTVKPREELLKQFTVPYLAIEVKFTAGLEGSVLLVIEVK 112 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 + D + G DG+ P E E + + + + A + V Sbjct: 113 DAAVVADLMMGNDGKNPPP----ELGEMEISAASEAMNQMIGTSATALAQLVGRTVSISP 168 Query: 182 -----SEMQVKFTNITTSPNDIVVNTPFHVEIGNL 211 ++ + ++V F++++G+L Sbjct: 169 PRARVLQINADAEKVVGEFEAVMVVVSFNMQVGDL 203 >UniRef50_A4SI06 Lateral flagellar motor switch protein, LfiM n=2 Tax=Aeromonas RepID=A4SI06_AERS4 Length = 236 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 81/245 (33%), Gaps = 26/245 (10%) Query: 86 IQPYHEFAR-NLPVPT--NLNLI--HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTK 140 Y EF + P + + L + SPS+++ FGG R + Sbjct: 11 ELTYQEFIAVSSPEHDDGLIWVEARSLLDTQRVAYFSISPSVIYRLAVLFFGGSLRNQGE 70 Query: 141 VEG--REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI 198 + T TEQR++ R+ + ++ +S + + LE + + Sbjct: 71 TASHSKGLTDTEQRLVLRLCQYQVDIWS-SCLGLGDLEWQLTLITRD-----VLPVSRLW 124 Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQ 258 + V + + + P P +D L + + H Sbjct: 125 MAAATLTVGSFSHGWQLWLVPPAE---------STGPAAGHALQD----GTLEQALTHIP 171 Query: 259 LELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 L +S+ L+ + L GDVL ++ P+ + A + P + + G ++ Sbjct: 172 TRLRVVMGQLSMTLADLECLKVGDVLSLDLPELVPALIGNRPCFSGRIAEHKGSLVYQVA 231 Query: 319 HLINP 323 ++ Sbjct: 232 TVVEE 236 >UniRef50_B6WWJ4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WWJ4_9DELT Length = 234 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 85/238 (35%), Gaps = 24/238 (10%) Query: 1 MGDSILSQAEIDALLNGD--SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M SILSQ EI ALL+G + KD P A + +D L+ + Sbjct: 1 MS-SILSQEEIAALLHGLPAAGGKDVPPAEAAAPADGE---------------ARLDALA 44 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 R AR + R ++T +R +P+ A + + + L+ L L+V Sbjct: 45 ARCARLCAASMEEQRGRLLELTPLPVRRRPFGSVADGIREASCCCAVDLEGLEEPALLVL 104 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 + VF ++ FG G R T E + + L + A K + Sbjct: 105 DRAFVFSLLEEFFGAGGFERPG--RRPLTALETMLARKFADRFLAAFDLAGKP-SSWHPR 161 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLP--FSMIEPLRELLVNP 234 S + + V + F +G G ++CLP FS +R L P Sbjct: 162 CGHSLSLPRLA-VLVPDEQPVWHLAFRSLLGGRPGALHLCLPEDFSTHLAVRSALPGP 218 >UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clostridium RepID=A6M1D2_CLOB8 Length = 398 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 20/268 (7%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M +S LSQ EI+ALL G+ E + + S D + ++ L I Sbjct: 3 MSNSFLSQEEINALLAGEDLSSSEGANTSTESSKS---DEGVITDIDKD---LLGEIGNI 56 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVFS 119 L+ L+ + +IT + + E P L++ ++ + G +++ Sbjct: 57 SMGSASTALYQLINQQVNITTPVVSVTTLREIKEGFETPNIVLDIEYVAGIIGRNILIIK 116 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWK---AI 172 + + + GGDG+ E + + E +N+M+ A + + I Sbjct: 117 TLDGLVISNLMMGGDGKVG---ETHDLSEIEISAVSEAMNQMIGSAATSMATMFGRKVDI 173 Query: 173 NPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELL 231 +P + V I + +V F + IG+ + P + + ++ Sbjct: 174 SPPTAKVVVDGSIPISEAI--PEDQPIVRVSFRMTIGDIVDSNIMQIFPIETAKNIVAIM 231 Query: 232 VNPPLENSRNEDQNWRDNLVRQVQHSQL 259 + +DN + + ++ Sbjct: 232 TGEDKGKEVAASEPAKDNKKDAIVNKEI 259 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 42/106 (39%), Gaps = 14/106 (13%) Query: 221 FSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNP 280 + EPL PP++N + + L++ + IL L Sbjct: 298 AATFEPLMPQNSVPPIKN------------IDLILDVPLDISVVLGRTKKSIQDILNLGT 345 Query: 281 GDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 G ++ ++K + + V+G + + ++ + +RI ++++ + Sbjct: 346 GSLIELDKLAEEPVEILVNGKQIALGEVVVVDENFGIRITNIVSSV 391 >UniRef50_UPI00016C4202 hypothetical protein GobsU_09169 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4202 Length = 283 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 88/291 (30%), Gaps = 22/291 (7%) Query: 37 PYDPNTQ--RRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 YD + R L + R LR + + + P + Sbjct: 5 EYDFRKPPPGDIERNVTAWLTLA----CRRTNEAAVQALRYPATLQIAKVET-PSAAYCL 59 Query: 95 NLPVPTNLNLIHLKPL--RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR 152 +++ P G L+VF ++ + L G RE T E Sbjct: 60 AFFPEGAISVPLAPPDAPGGGALLVFPNPVLIALLSGLIG--EAPEALPADREPTPMESA 117 Query: 153 VINRML-KLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL 211 +I ++ + + + +W + PL V + T N+ + F + Sbjct: 118 LIPHLVREFFVTPFLKSWPGVEPL---VVDIGAPAAPAAVWTGGNEHNIFVTFTLSAPYG 174 Query: 212 TGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLR 271 + L S E L + S + + V+ +E+ L Sbjct: 175 EHPIYLLLTRS---GRWEQLAA--IGLSPPVTPAPKSEIESVVRAMSVEMSVILGRADLT 229 Query: 272 LSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + + L GDV+ ++ + + V G G + + A+ ++ + Sbjct: 230 MRDVSDLTTGDVIVFDQKVTEPLDGLVSGARKFRVWPGVVGDRAAVVVDTI 280 >UniRef50_UPI000169865A flagellar motor switch protein FliM n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169865A Length = 111 Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 224 IEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDV 283 +EP+RELL + D+ W +L ++ +++EL + + + L ++ KL+ GD+ Sbjct: 1 MEPIRELLDAGVQSDRGERDERWERSLREEILGAKIELKSILTETCVTLRELSKLDKGDI 60 Query: 284 LPIEKPDRIIAHVDGVPVLTSQYG 307 +PIE P+ + VPVL Q G Sbjct: 61 IPIELPEEVEVTAAEVPVLPRQAG 84 >UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion protein n=5 Tax=Bacteria RepID=B2A359_NATTJ Length = 422 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 82/235 (34%), Gaps = 20/235 (8%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER--- 60 ILSQ EIDALL G + G S + +NE Sbjct: 6 DILSQEEIDALLKGSGDDDSGDDGDNHGGSGGSGSGNDGNGGNGNNGDNGDNSLNETEKD 65 Query: 61 --------FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLR 111 L LL + IT + + Y P P + + +L+ L Sbjct: 66 TVGEIGNISMGTAATTLSVLLNQKVSITTPRVEVTDYATLREEFPKPHVAVEVEYLEGLE 125 Query: 112 GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF-THTEQRVINRMLKLALEGYSDAWK 170 G +++ + + + GGDG + E EF +N+M+ A SD + Sbjct: 126 GINVLILKQEDAKMIANLMMGGDGTDIAEGEIEEFHLSAVGEAMNQMMGSASTSMSDMFD 185 Query: 171 ---AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPF 221 I+P V+ + + + P + ++ F ++IG+ + E +PF Sbjct: 186 KTINISPPSVKMLDLGSEEALEEL---PKEPMIKVAFDLKIGDLIDSEIMQLIPF 237 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + LE+ ++ +IL+L PG ++ ++K + + V+G + + ++ Sbjct: 343 IMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVIDE 402 Query: 312 QYALRIEHLINPI 324 + +RI +I+P+ Sbjct: 403 NFGIRITEIISPV 415 >UniRef50_Q0C4V9 SPOA domain protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C4V9_HYPNA Length = 325 Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 53/337 (15%), Positives = 104/337 (30%), Gaps = 45/337 (13%) Query: 5 ILSQAEIDALLNGD-SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 +L+ AEI+ LL D S++ D P + T + + E AR Sbjct: 17 VLTAAEIEMLLRPDLSDMDDLPETEPEAVPAPKLVQEFTPAPPAQGEAR------EEAAR 70 Query: 64 HFRMGLFNLLRRSPDI----TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT--GLVV 117 L +R + +V + + P ++ G ++V Sbjct: 71 RISARLSRAMREHCGLAAAFSVKRVSPASLAQAVSARDEPGQ-AIVCCSGADGDVAAMLV 129 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 L I ++ GG + + + + ++ + + + Sbjct: 130 IGAGLAQIMIETACGGP---VPNGQPKALSPIDLALVEGLTRPL--------APFIGRGL 178 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 + E F +P + V G + +++P Sbjct: 179 GFAGVETDPLFAASIAAPG-VAYEITLSVRAGGADWPARLL----VLKPFLAEAPEAEAA 233 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL----PIEKPDR-I 292 +R + L + + A A + + +S++ L PG L P ++P + Sbjct: 234 PTRGA--HASGAL-------TVLMTARVARVEMPISRLTSLRPGVTLLLGVPADQPVELL 284 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 +DG +Q G + ALRI P L +LN Sbjct: 285 SGGLDGDVAAEAQIGRKGNRMALRISKR-GPALRALN 320 >UniRef50_A3WGR7 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGR7_9SPHN Length = 343 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 85/276 (30%), Gaps = 14/276 (5%) Query: 49 ERLQALEIINERFARHFRMGLFNLL-RRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL 107 ER QA+ A+ L LL ++++ + + L+ Sbjct: 33 ERAQAISTWCRDLAQELAQELAPLLSGGRLNVSIAEPEQVGAQDVFDLIGPIAVNCLLRC 92 Query: 108 KPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGR-EFTH---TEQRVINRMLKLALE 163 T L + D FGG+G P + + + EQ + + + Sbjct: 93 GEGDQTVLFSLDYATAIGLTDCSFGGEGTLPDEAPSQLPHSAAMLVEQ-FAATVAQAIVM 151 Query: 164 GYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNI-CLPFS 222 A +A + VRSE + V + G + + Sbjct: 152 TNGSAERARGDV---LVRSESVTRLKPFGADAE--VALFKLTINRGESANWCALFAVASD 206 Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 ++ L L + + E + L L A +I L L ++ +L PGD Sbjct: 207 RVDGLLPGLEAVRIRSRSLEGSGDFER--SGFAAMPLTLEAVVGEIDLTLGRLEQLRPGD 264 Query: 283 VLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 +P+ + + + G L+ ALR+ Sbjct: 265 KIPLTISRDLPLRIGETVFARGKVGRLDSNLALRVT 300 >UniRef50_B9KJS2 Surface presentation of antigens (SPOA) protein n=5 Tax=Rhodobacter RepID=B9KJS2_RHOSK Length = 331 Score = 73.8 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 88/238 (36%), Gaps = 22/238 (9%) Query: 93 ARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR 152 +P + + P G GL+ +P L+ V+ G R P R+ + T+ Sbjct: 72 LLEMPEDLSFYAVLEGPGEGLGLIALAPPLLAGLVEVQTVGRVR-PQPAATRKPSRTDAA 130 Query: 153 VINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI----------VVNT 202 ++ + AL + +E E ++ + P + V+ Sbjct: 131 MVQDFIDRALAEL-----DLLLIEDEDRVWAGGFRYASFLDDPRPLGLLLEDCPYRVLVA 185 Query: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 + +G TG+ + +P + EL + + + ++ + QV L Sbjct: 186 EVDLALGAKTGQLLLAVPA---DGRGELPHHGGQDEAPPPLSDFGAAMAEQVMAVDCRLE 242 Query: 263 ANFADISLRLSQILKLNPGDVLPIEKPD---RIIAHVDGVPVLTSQYGTLNGQYALRI 317 A I+L L+ +L PGD +P+ + + +DG PV + G G A+R+ Sbjct: 243 AVLGRITLPLAHVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 300 >UniRef50_Q1ZWR7 Putative flagellar motor switch protein n=2 Tax=Photobacterium RepID=Q1ZWR7_PHOAS Length = 257 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 86/269 (31%), Gaps = 32/269 (11%) Query: 54 LEIINERFARHFRMGL---FNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 + II + A L + +++ + + + ++H Sbjct: 10 IHIIKDELANILNNSLLGLTDQIQKWVKTHELTMSVTSIDFQSPKQGQHAAFTVLHNDG- 68 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY--SDA 168 G S L+ D + + + T ++ R+ R+ +L D Sbjct: 69 -GMMNFRCSAPLLIALADRFYHSPVNRLNSTKSQTITTSDLRLQERIGRLFSAQIAPEDM 127 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 W+ + + +DI + V G+ IC+ ++I+ L Sbjct: 128 WQPCD------------------NSLSDDIGLFIQLSVTCEETIGDIIICIDSALIQTLT 169 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 ++ P +Q++ ++++L + + L Q+L+L PGD+ I+ Sbjct: 170 SVIGLQPTSELNA-------LFSQQLESTKVKLNTVLCEKQMPLDQVLQLKPGDIFDIDL 222 Query: 289 PDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 + + NGQ L I Sbjct: 223 LQSSPISIGQEHLFNGHVAEQNGQLVLII 251 >UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ED81_9LACO Length = 409 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 29/244 (11%) Query: 1 MGDSILSQAEIDALLNGDSEVKDE-------------PTASVSGESDIRPYDPNTQRRVV 47 M D LSQAEIDAL+NG S ++ + + + + + ++ Sbjct: 1 MSDG-LSQAEIDALMNGGSAAAEDDSKEEKVEEKTEEQSEAEIEKEAVEDATLDVDDEII 59 Query: 48 -----RERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL 102 + R+ + + L ++L IT + + + P Sbjct: 60 AGMDEQARMDLIGEVGNISMSQAATTLSSILNHRVSITTPRVTKIRFASLMEGIKTPKVA 119 Query: 103 NLIHL-KPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRM 157 + + + GT L++ I D + GG G E EF E +N+M Sbjct: 120 TTVEYKEGVIGTNLMLLQVRDASIIADLMMGGPGNAK---EDAEFGDLELSAVAEAMNQM 176 Query: 158 LKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNI-TTSPNDIVVNTPFHVEIGN-LTGEF 215 + A + + V+ + + +P+ IV F++++ + E Sbjct: 177 IGSASTSMATMINRKVDILPPMVKLWGEPDNISYDGINPDSIVYRISFNLDVEGLIESEI 236 Query: 216 NICL 219 Sbjct: 237 MQIF 240 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L L + +IL N G V+ +EK + + ++G + + +N Sbjct: 330 LMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEVVVIND 389 Query: 312 QYALRIEHLINPIL 325 + +RI ++++ Sbjct: 390 NFGVRITNILSQSQ 403 >UniRef50_B9Z4S5 Surface presentation of antigens (SPOA) protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z4S5_9NEIS Length = 291 Score = 71.4 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 14/211 (6%) Query: 110 LRGTGL-VVFSPSLVFIAVDNLFGGDGR--FPTKVEGREFTHTEQRVINRMLKLALEGYS 166 L G G+ V + L+ +D +GG P RE T TE+R+ + + Sbjct: 79 LDGAGIGVNVARPLLLRILDYRYGGRASPALPAAQPPRE-TETERRLARMLGERLTARLV 137 Query: 167 DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTG----EFNICLPFS 222 A + ++ + + P D + +G + + L + Sbjct: 138 QAVRRLS--RRPLPTLKAPPAVETLPFPPGDAPAW-HMQLTLGEAGSGGASQIGLALDAA 194 Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 + + L + Q+ + L A + L L +IL L G Sbjct: 195 VFAQVLRQLPLQAALPGPAAGKTLARPFAEQLS---IRLSARLMEKRLTLGEILDLRVGS 251 Query: 283 VLPIEKPDRIIAHVDGVPVLTSQYGTLNGQY 313 VLP+ + ++ V T+ +G+ Sbjct: 252 VLPVSLQQQADVYIGRTRVFTAAVAESHGKL 282 >UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6B2_THEAS Length = 375 Score = 71.1 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 51/391 (13%), Positives = 114/391 (29%), Gaps = 95/391 (24%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MG+ LSQ EIDALL+G P+ S + ++ L + Sbjct: 1 MGEDFLSQDEIDALLSGGKPSGGGPSGGGSIGG---------------DEMEILREVAST 45 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRG----TGLV 116 A + L RS + V + P + + + + +K G + Sbjct: 46 AASSVGNVMGMLAGRSVSVNVTNCEVAPQNSVVEKVGAMSIF-VFSMK-WDGLDDAPARL 103 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 V S D + GGD + + + Q ++++ AL S K Sbjct: 104 VTSDKGALTLADLMMGGDAKELPEEPNDLYLSASQEGFSQLIGSALTSISGLLKG----- 158 Query: 177 VEYVRSEMQVKFTNITTSP------NDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRE 229 + + + + P D V + ++ + LP P + Sbjct: 159 AKLAPKDTSGGLADFSWVPFDQLAVTDEAWIAGMEVAVDDVAPFPLFLVLPA----PNAK 214 Query: 230 LLVNPPLENSRNEDQNWRDNLV--------------------------RQVQHSQLELV- 262 L E S +++ ++ + + +++ Sbjct: 215 DLAERIREVSVPKEEPKQEARAPQAAAAPRAPQPAAPARDEGFYAPRSASISTAPVDVRP 274 Query: 263 -----------------------------ANFADISLRLSQILKLNPGDVLPIEK--PDR 291 + +IL ++PG V+ + + + Sbjct: 275 AEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEP 334 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + V+G + + ++ + +R+ +++ Sbjct: 335 VDVLVNGKLIARGEVVVIDENFGVRVTEIVS 365 >UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campylobacterales RepID=Q17WT1_HELAH Length = 283 Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 28/271 (10%), Positives = 84/271 (30%), Gaps = 18/271 (6%) Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 F + L L+ ++P + + + E + + + + ++ Sbjct: 8 FIQEVVSTLEGLVGKTPSVGLEK-EVSNNEEASLISTPYARVMISAIDKGESHIELLAPV 66 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 LV D + GG+G +++ + M + + K+ L + Sbjct: 67 GLVTTLSDLMLGGEGASKEEMDNDDL-----DAFKEMASNIFGAIATSLKS-QELLPKLN 120 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRELLVNPPLENS 239 + + D F ++ L + + + I + Sbjct: 121 FTTTNAEIAKELPKKEDYAKAVVFSFKMEALKESQMILLVTTDFINQFETKKEHNEEGTK 180 Query: 240 RNEDQNWRDNLVRQVQ--------HSQLELVANFADISLRLSQILKLNPGDVLPIEK--P 289 + +D + ++ +L + + L ++ ++ G V+ +++ Sbjct: 181 VVREDKIQDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 240 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 D + VD + + ++G + ++I + Sbjct: 241 DPLEILVDDKVIAKGEVVIVDGNFGIQITDI 271 >UniRef50_A8GYM9 Putative uncharacterized protein n=3 Tax=Shewanella RepID=A8GYM9_SHEPA Length = 293 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 16/187 (8%) Query: 133 GDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNIT 192 G K R + +E R++ R++ A++ + LE+E + +E +K Sbjct: 112 GAFASTPKSPLRSPSQSEFRLVKRLMIAAIKRLPITEIDEDALELELLSNETPIK----- 166 Query: 193 TSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVR 252 + F +G + F M E L L+ L + D + L Sbjct: 167 ---APVCCELSF---PAAHSGPPML---FFMSEYLLGLMAE--LPSQYQADPALSEKLAH 215 Query: 253 QVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQ 312 +++ L ++ S L+ + L GDVLP+ R V P+ + T GQ Sbjct: 216 RLRQIPLRVLLELGHQSTSLTSLQNLAVGDVLPMNLHSRCPVTVGKRPLFYATVHTHEGQ 275 Query: 313 YALRIEH 319 ++ Sbjct: 276 MVAKLTQ 282 >UniRef50_B8CVM7 Putative uncharacterized protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CVM7_SHEPW Length = 308 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 16/187 (8%) Query: 133 GDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNIT 192 G K R + +E R++ R++ A+ + ++ + + E+ T I Sbjct: 127 GSFTSAAKSPLRAPSQSEFRLVKRLMLAAINTL-----PVADIDTDELELELITNTTPIK 181 Query: 193 TSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVR 252 + F + F + E L L+ P + D + D L + Sbjct: 182 AP---VCCELNFPIAHIGPGIRFYMA------EYLLGLMAEQP--SQYQADPDLNDKLAK 230 Query: 253 QVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQ 312 ++ ++ S+ ++ + +L GD+LP+ R V P+ + GQ Sbjct: 231 SLKQLPFRVMLELGQQSIPVTGLQQLKVGDILPMNLHSRCPVTVGKRPIFYATVHAHEGQ 290 Query: 313 YALRIEH 319 ++ Sbjct: 291 MVAKLTQ 297 >UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBQ2_9PROT Length = 269 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 86/236 (36%), Gaps = 17/236 (7%) Query: 90 HEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHT 149 + +P +N+ + P +G + + +P + D + GG+G T + + Sbjct: 33 EKIVDIIPPFIKVNV-SVSP-KGEIVFILTPEIATALGDMMLGGEGEARTDINDEDL-DA 89 Query: 150 EQRVINRMLKLALEGYSDAWKAINPLEVEYVRS---EMQVKFTNITTSPNDIVVNTPFHV 206 + +++ + +A + L + E F+ + I Sbjct: 90 TKEIVSNIFGSLTSTL-EAQDNMENLTFKVEDIAFVETNEDFSKYAYFLDLIC------- 141 Query: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 ++ ++ E + + + + E+S ++ L + +L+L Sbjct: 142 KVASVEKECFVLFDKDFVSIFNNDIKDKISESSHELNKEIPSQL-DMLMDVKLQLRVRIG 200 Query: 267 DISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 ++ L ++ ++ G ++ +++ + + ++ + + ++G + ++I + Sbjct: 201 KKTMLLKDVISMDIGSIVELDQLANEPLDILIEDKKIGEGEVVIVDGNFGIQITSI 256 >UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria RepID=B8DI82_LISMH Length = 515 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 48/297 (16%), Positives = 101/297 (34%), Gaps = 46/297 (15%) Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 L LL R + + R+ EF N ++ ++ LR + + S + Sbjct: 227 IGSASTVLSKLLNRKVSLQIPTARVIDSKEFEFNERPCLVTSVEFVEGLRSSNTFIISKN 286 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTE----QRVINRMLKLALEGYSDAWK---AINP 174 I D + GDG E E T E Q ++N+M+ + S+ I+P Sbjct: 287 AALIMADLMMMGDGLV---QEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISP 343 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICL-------------- 219 +E+ + NI V+ F +E+ L Sbjct: 344 PTMEFCNFGDTMIQKNIEEGKTVEVI---FPLEVEGLLKTPMYQIFNPAAAKEMAQLMLG 400 Query: 220 -------------PFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 P +IEP E P + E + + + + ++ + L F Sbjct: 401 IQAKEVAEKEATTPAEIIEP--EKPAEPVHQAVIEEKETLSE-MEQILEDIPVTLEVVFG 457 Query: 267 DISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 ++L + + DV+ ++ + ++ ++GV + ++ + +++ L+ Sbjct: 458 TAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELV 514 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 18/242 (7%) Query: 55 EIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTG 114 EI N F L +LL + I+ + I + L + K + Sbjct: 19 EIANISFG-SASTVLSDLLHQQVTISTPKVEIVDLYNTKDIDIPHVVLEVNFHKGIEMRN 77 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF-THTEQRVINRMLKLALEGYSDAWKAIN 173 L V + D + GDG E E Q +N+M+ + S+ + + Sbjct: 78 LFVLQSEVAAAIADLMMMGDGNIDPNEELSELHLSAVQEAMNQMMGHSATAMSNMFGEMI 137 Query: 174 PL---EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRE 229 + +++ + + + + + ++ F + IG+ +T +P Sbjct: 138 DITTPDIKVIALK-----EQLEDTNDQTMIKVGFDLIIGDLITSNLMQLIPID----KGH 188 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVA---NFADISLRLSQILKLNPGDVLPI 286 L L ++ E + ++ + + + L S LS++L +P Sbjct: 189 ELAKRLLGDAVPEPEPVKEEISLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLQIPT 248 Query: 287 EK 288 + Sbjct: 249 AR 250 >UniRef50_Q7NTQ3 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTQ3_CHRVO Length = 280 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 14/197 (7%) Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 F L+ +D FG E T TE+R+ + + L + A I+ L Sbjct: 88 FDRGLLLGILDYRFGARAGASDGELPAE-TETERRLGRTLAERLLPRLARA---IHQLSR 143 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPL 236 + + + P+ + G+ G + L + + L + L Sbjct: 144 ASLPDASRPQPLGY---PDQAAWQLEVDLSDGDAKLGTLRLRLNAAAFDALLQNLSGQRP 200 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHV 296 N D + ++ L A + L L +L L PG VLP+ Sbjct: 201 RLLGNPDSANFA------ERVRIRLDARLLEQELPLGAVLDLRPGSVLPVAMQPHAEVCA 254 Query: 297 DGVPVLTSQYGTLNGQY 313 G P+ +Q G+ Sbjct: 255 QGSPLFRAQVVERQGKL 271 >UniRef50_Q165H9 Putative uncharacterized protein n=2 Tax=Roseobacter RepID=Q165H9_ROSDO Length = 382 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 84/262 (32%), Gaps = 19/262 (7%) Query: 81 VGAIRIQPY--HEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP 138 V + + + + + L L+ P TG V +LV V G P Sbjct: 44 VIGVTQERCAAENLSDKIEDDSLLVLLD-GPAGVTGGAVIGANLVNALVQQQTMGR-VLP 101 Query: 139 TKVEGREFTHTEQRVINRMLKLAL----EGYSDAWKAINPLEVEY-VRSEMQVKFTNITT 193 R T T+ + +L ++ R++ Q F Sbjct: 102 PTSASRPLTETDAALCAPVLDALFIRANGLLETPEDKRVLPAFKFGARADSQRLFALALE 161 Query: 194 SPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQ 253 P V+ V G ++ LP L + + S D L + Sbjct: 162 EPEYTVLKLTIDVSGGITQSTLSLILP------LPKAVPERQSSESETADPGSPATLEKS 215 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDV--LPIEKPDRIIAH-VDGVPVLTSQYGTLN 310 V EL A + + LS++ +L PG +P + + ++G V G ++ Sbjct: 216 VMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPANAFESVELLSIEGARVARGSMGQID 275 Query: 311 GQYALRIEHLINPI-LNSLNEE 331 G+ AL + L P L E+ Sbjct: 276 GKRALMLGQLQTPASGGDLAED 297 >UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=5 Tax=Bacteria RepID=B0THB7_HELMI Length = 375 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 9/169 (5%) Query: 73 LRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLF 131 + + DIT + + ++ P P +++ + L G +++ S V I VD + Sbjct: 1 MGKKVDITTPRVYVTTKAALQKDYPSPFVVVDVTYTAGLEGNNVLIIRESDVAIIVDLMM 60 Query: 132 GGDG-RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTN 190 GGDG P ++ F+ + +N+M+ A + + + + + + Sbjct: 61 GGDGMSPPAELNEIHFSAISEA-MNQMMGSAATSMATMLQKKIDISPPMLNT-IDFASEK 118 Query: 191 ITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLEN 238 + D V+ F + I + E P P + LV+ + + Sbjct: 119 LPRPDVDPVIKVSFRMVIEGLVDSELMQIYPI----PFAKQLVSGLMGD 163 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + IL L PG V+ ++K + + V+G + + ++ Sbjct: 296 IMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVVVIDE 355 Query: 312 QYALRIEHLINPI 324 + +RI +++PI Sbjct: 356 NFGVRITDIVSPI 368 >UniRef50_A7H8B4 Type III secretion system apparatus protein YscQ/HrcQ n=4 Tax=Anaeromyxobacter RepID=A7H8B4_ANADF Length = 334 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 81/270 (30%), Gaps = 67/270 (24%) Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEG 164 + L L GT V P+LV VD L GG G T E + AL+G Sbjct: 74 VDLPALPGTASVEVEPALVVALVDRLAGGKGEALGAT---SLTSVESAALELFALAALDG 130 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMI 224 ++ V + + T P+ + + G L+G + LP + + Sbjct: 131 ---------ACQLAAVEETLSPRLCRATPEPS-AALAVELTLTAGELSGRARLLLPAAAV 180 Query: 225 EPLREL-----------LVNPPLENSRNEDQNWRDNLV---------------------- 251 LR LV + + L Sbjct: 181 RALRGAPAFDGDAAGIGLVASVRGGAAALRTEELEALAAGDVVVLDGGAGPRALVLPGGA 240 Query: 252 -------------------RQVQHSQLELVANFADISLRLSQILKLNPGDVLP--IEKPD 290 +++ + L A + + L+++ +L PG +LP +++ Sbjct: 241 RLSGRHEDGTFHVEEIEMTQRMAQLPVVLEVELARVEVTLAELARLEPGGILPLALDRRG 300 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + V + ++G +RI L Sbjct: 301 LVTLRAGERAVARGELVDVDGAVGVRIIDL 330 >UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B0L6_SULD5 Length = 286 Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 91/266 (34%), Gaps = 16/266 (6%) Query: 67 MGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIA 126 + L +P + + R P L++ + G V + S+ Sbjct: 14 STIEGLTGIAPQVELNKEESTESK--LRLSPPLARLDVSVGGDMHGRMRVTVATSIATAI 71 Query: 127 VDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQV 186 D + GG+G +++ + + +++ +L + K + LE + E Sbjct: 72 GDMMLGGEGLEKEEMDAEDL-DATKEIVSNILSSFSRSLASQ-KNMPKLEFDIESVEYID 129 Query: 187 KFTNITTSPNDIVVNTPFHVEIGNLTGEFNI---CLPFSMIEPLRELLVNPPLENSRNED 243 + I + + + + + T F I P P + E++ E Sbjct: 130 ANSEIEFRGYEKLFIYNLAIHMSHDTIAFAISSELTPLVEDMPRMDTPKESIPESALIEP 189 Query: 244 QNWRDNLVRQ-------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIA 294 + ++ + ++ +L + + L +L ++ G V+ +++ D + Sbjct: 190 KKVVPSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEI 249 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHL 320 V + + ++G + ++I + Sbjct: 250 LVGDKVIAMGEVVIVDGNFGVQIGEI 275 >UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XES1_9HELI Length = 283 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 77/215 (35%), Gaps = 12/215 (5%) Query: 112 GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA 171 T + +L D + GG+G + ++ + + + + A Sbjct: 63 STLCFIMPENLATALPDLMMGGEGDTGKDMMD----DDDKDGLKEVFQSITGALATALGG 118 Query: 172 INPLE-VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 230 L + +++ S +D + F V I ++ E + ++ + + Sbjct: 119 HEKLPHFSFAIADVS--NVESEGSLSDFDTASRFDVGIDSVKSELIMLTKNDLLTHVPKD 176 Query: 231 LVNPPLENSRNEDQNWRDNLVRQV---QHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 L P S N+D + D +R + L + + L ++ ++ G V+ + Sbjct: 177 LKAPASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELN 236 Query: 288 K--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + D + V+ + + ++G +A++I + Sbjct: 237 QLASDPLEILVNDKIIGKGEVVVVDGNFAIQITEI 271 >UniRef50_A3VIM0 Possible flagellar switch protein FliM n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VIM0_9RHOB Length = 378 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 92/274 (33%), Gaps = 31/274 (11%) Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHE-------FARNLPVPTNLNLIHLKPLRGTG 114 AR R + ++ D+ +I E + + LI P G Sbjct: 29 ARILRTAI---MQAGEDVAALSIVAGQPEEMRTTLAPIVEGIGEHALMALIE-GPEGRYG 84 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSD--AWKAI 172 L++ P + ++ G P R T T+ + + LE D A I Sbjct: 85 LILVDPDTLAALIEIQTTGR-VVPRPATARPPTRTDAIMCADFIDRVLELLEDRTAEADI 143 Query: 173 NPLEVEYVRSEMQVKFTNITTSPN--DIVVNTPFHVEI----GNLTGEFNICLPFSMIEP 226 + + + P D V FHV + G G ++ LPF+ Sbjct: 144 -DIAPALGGFRYALALSEARAIPMTLDDVPYRRFHVSLDLGRGAKQGTLDVILPFN---- 198 Query: 227 LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI 286 + + + + L V +++ L + + L+++ L+ G V+PI Sbjct: 199 ---AAPSGAAAATNADPAGFTQALAEVVGEAEVLLRGTLHRLQMPLAEVAGLSVGSVIPI 255 Query: 287 EKP--DRIIAH-VDGVPVLTSQYGTLNGQYALRI 317 + ++ ++G V + G G A+RI Sbjct: 256 PREALGQVAIEDINGRTVKHGRLGMSGGHRAIRI 289 >UniRef50_A6F9R6 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F9R6_9GAMM Length = 306 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 96/271 (35%), Gaps = 26/271 (9%) Query: 54 LEIINERFA---RHFRMGLFNLLRRSPDITVGAIRIQPY-HEFARNLPVPTNLNLIHLKP 109 LE+IN + R L L I +Q + HE + + TN+ + + Sbjct: 54 LEVINSDLSLAHREIERRLSQLFNEY----EYRITLQKFTHERVNPVDLGTNIIWLQAQN 109 Query: 110 LRG-TGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 G L+ + ++++ + G + K + + +E R++ R+L + L+ + Sbjct: 110 NVGLKVLLSINNAMLYTLTEIFLGAT-KPSNKDNLAQPSDSEYRLLKRILTIQLDALDNQ 168 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 + + + + D +++ I + I P E + Sbjct: 169 LSHHHEWTISHTN----------QPTIGDEFISSTIDCTIKEYLSSWRIWYPK---EFIN 215 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 + L + ++ + + L + + A L L Q+ +L GD + ++ Sbjct: 216 QTLSS---NRTKPDYELLAAKLANAATNIPTNINVILAKTQLNLVQLTQLKSGDFIMMDL 272 Query: 289 PDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 P+ + A + + +G+ +++ Sbjct: 273 PEIVSACTGNHVIAHGRVVVQSGRLVMQVTD 303 >UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding protein n=20 Tax=Campylobacter RepID=A7GZX6_CAMC5 Length = 286 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 88/273 (32%), Gaps = 27/273 (9%) Query: 69 LFNLLRRSPD-ITVGAIRIQPYHEF----ARNLPVPTNLNLIHLKP-LRGTGLVVFSPSL 122 N L+ + + +T + ++F + P + + L + +V +P L Sbjct: 9 FTNELKATVEGLTGRTPEVGERNDFDAPTQNGIKPPVVMASVMLSGDVNAKAEIVCTPVL 68 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW---KAINPLEVEY 179 V + + G + + G + E + L +S + K + + E Sbjct: 69 VSAISEWMMGEEEISRNEALGAD----ELDAAKEIFSNLLSAFSTSLGAQKGMPKISFEI 124 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS---MIEPLRELLVNPPL 236 V + + + S + + F V+I ++ + EP + Sbjct: 125 VNVNFLDENSALDFSVYEKLFL--FSVKIEDINEHIGFVCDHTLMKFFEPTKVGESESQS 182 Query: 237 ENSRNEDQNWRDNLVRQ-------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK- 288 + R + + +L + + L +L ++ G V+ + + Sbjct: 183 GDQAKATHGSRSEFSAEEMRNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQL 242 Query: 289 -PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 D + + + + ++G + ++I + Sbjct: 243 ANDPLEILIGDKVIALGEVVIIDGNFGIQITQI 275 >UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Helicobacter pylori RepID=B2USQ1_HELPS Length = 288 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 86/275 (31%), Gaps = 21/275 (7%) Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIH-LKPLRGTGLVVFS 119 F + L L+ ++P + + + + P ++ ++ + +V Sbjct: 8 FIQEVVSTLEGLVGKAPSVGLEKEVSNSEEAWESLISAPYARVMVSAIEKEESSIELVAP 67 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LV D + GG+G +++ + M + + K+ L + Sbjct: 68 VVLVTALSDLMLGGEGASKEEMDNDDL-----DAFKEMASNIFGAIATSLKS-QELLPKL 121 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE------------PL 227 + + D F ++ L I L + E Sbjct: 122 NFTTTNAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEEE 181 Query: 228 RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 + ++ +N + + +L + + L ++ ++ G V+ ++ Sbjct: 182 TKKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 241 Query: 288 K--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + D + VD + + ++G + ++I + Sbjct: 242 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITDI 276 >UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspira RepID=C0R179_BRAHW Length = 360 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + + + ++ + IL L G ++ ++K + + V+G + + ++ Sbjct: 280 LMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE 339 Query: 312 QYALRIEHLINPILNSLNE 330 + +R+ +INP+ N+ Sbjct: 340 NFGVRVTDIINPMDRLTNK 358 >UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L1_KINRD Length = 249 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 248 DNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQ 305 + ++ Q+++ S+ + +L L PG V+ +++ V+G + + Sbjct: 168 RRTMDLLRDVQMDVTVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGE 227 Query: 306 YGTLNGQYALRIEHLINP 323 ++ YA+RI ++ P Sbjct: 228 VVVVDEDYAIRITEIVTP 245 >UniRef50_Q28NV3 Putative uncharacterized protein n=1 Tax=Jannaschia sp. CCS1 RepID=Q28NV3_JANSC Length = 388 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 89/271 (32%), Gaps = 25/271 (9%) Query: 61 FARHFRMGLFNLLRRSPDITVGAIRI-QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R R +P + A+ + +P + R GLV Sbjct: 35 LTRAIRRASLPYAVLAPQVEDAAVTSGASLQDALDTMPEQGLTAAVEDAEGR-RGLVALD 93 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA--------WKA 171 LV ++ G+ T R+ T ++ + L L L ++ W Sbjct: 94 HPLVDALIEVQATGE-VEKTNHPARKVTRIDEALCRDFLDLVLAAFAQETAGQAGRDW-- 150 Query: 172 INPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEP-LRE 229 P + Y + N+ V V +G TG+ + LP +P + Sbjct: 151 --PDRMRYGSIITERAQLNLLMPERGYRVLRT-SVTMGGHKTGDLVLVLPS---DPAIAR 204 Query: 230 LLVNPPLENSRNEDQN-WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 + ++ E W D ++ + + + L A + L ++ L GD++P + Sbjct: 205 RGGSVEQPSAPAEAPKGWGDRMLGAISTAPMALDAVLMRTIMPLGKVEDLAQGDLVPFDH 264 Query: 289 PDRIIAHVD---GVPVLTSQYGTLNGQYALR 316 D ++ G G ++G+ A+R Sbjct: 265 NDLSAISLEDEIGHVFARGALGQVSGRRAVR 295 >UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30SP4_SULDN Length = 283 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 88/271 (32%), Gaps = 18/271 (6%) Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 F + L+ ++P + + + + +P LN+ + ++ +P Sbjct: 8 FESETVGTIEALIGQAPSMELKERQELSI--ISSIVPPIVLLNVSVSGDTNSSAMLALTP 65 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 LV D + G D V + + + + + A K + L Sbjct: 66 RLVASLSDMMMGEDQSNREDVSEDDL-DAAKEIASNIFGAISNSLG-AQKELPKLSFNID 123 Query: 181 RSEM-QVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLP--FSMIEPLRELLVNPPLE 237 E + + + V +H IG + + S I ++ + + Sbjct: 124 NIEYIDENKDVSLENYSKMFV---YHFVIGETNSLLMLIMDENLSNILFQKDKTLGDDRK 180 Query: 238 NSRNEDQNWRDNLVRQ------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--P 289 N N++ + + +L + + L +L ++ G V+ + + Sbjct: 181 NESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLAN 240 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 D + VD + + ++G + ++I + Sbjct: 241 DPLDILVDDNVIAEGEVVIVDGNFGVQITSI 271 >UniRef50_Q1D0N5 Type III secretion system apparatus protein YscQ/HrcQ n=2 Tax=Cystobacterineae RepID=Q1D0N5_MYXXD Length = 416 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 91/286 (31%), Gaps = 37/286 (12%) Query: 15 LNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERL-------------QALEIINERF 61 L+ +E + +RP RR+ R L +AL+ + Sbjct: 28 LDAAAEPPMNTRIEHAASRKVRPLRRLGARRLTRAHLVLAERPQAGSLGREALDAVMAAL 87 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 R + R + ++ L P L+ L + GT ++ P+ Sbjct: 88 TRELGCPVHAEARILESVVSPSV----------GLGEPAIFALLELSAVGGTAVLELEPA 137 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L F+ ++ + G G+ P V E E+ + +L +AL A A L Sbjct: 138 LAFMGLERIAG-AGQRPGVVT--ELARLEEATLAYVLLVALSAVRAAGGAYPWLGPRLAG 194 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 M P + +V V +G + LP +++ + + L Sbjct: 195 VTMSRSDVVARLDPREPLVGIELMVTVGESRAGARLLLPSQVVQTVFQALPVERAPG--- 251 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 + +V + LE L + + L GDV+ E Sbjct: 252 --------IAPEVLAASLEARCLVGQTPLSANALDALVVGDVVVFE 289 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHVD 297 + D + + +++ + + LS++ L PG +LP+ + ++ V Sbjct: 332 QESDMVVVNKQEEGMPPLPVDVEIELTRVMIPLSELAALKPGALLPLHINASEPVVLRVG 391 Query: 298 GVPVLTSQYGTLNGQYALRI 317 V ++ + G+ R+ Sbjct: 392 DRAVARAELVEIEGEVGARV 411 >UniRef50_A9FKL0 Surface presentation of antigens (SPOA) protein n=8 Tax=Rhodobacterales RepID=A9FKL0_9RHOB Length = 460 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 12/137 (8%) Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQ 258 V+ + G + G + LP EP E L + L + + Sbjct: 181 VIELTLDLACGAMQGGLTLILP----EPSPEDLGEAGQNAHQAGPS-----LGSNMGSMR 231 Query: 259 LELVANFADISLRLSQILKLNPGDVLPIEKP---DRIIAHVDGVPVLTSQYGTLNGQYAL 315 EL A + + ++ L GD+LP+++ + + + G + + G +NG A+ Sbjct: 232 AELRAVLCRMKVPANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAV 291 Query: 316 RIEHLINPILNSLNEEQ 332 R+ ++N ++ Sbjct: 292 RLTDPRTKLVNDRAADE 308 >UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67K24_SYMTH Length = 126 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + +LEL L +IL + PG VL ++K + + V+G V + + Sbjct: 49 LADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGE 108 Query: 312 QYALRIEHLINP 323 Y +RI LINP Sbjct: 109 NYGIRITELINP 120 >UniRef50_A1RF66 Putative uncharacterized protein n=3 Tax=Shewanella RepID=A1RF66_SHESW Length = 293 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 21/278 (7%) Query: 43 QRRVVRERL-QALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN 101 Q ++ R RL Q L ++ L LLR+ + +P +P Sbjct: 25 QEKLARTRLLQQLVQLHRPLIDAINNILSPLLRQGHSAVSSSHLTEPRK---PIIPEHYY 81 Query: 102 LNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLA 161 I G + N +G P R+ + +E R+ ++L Sbjct: 82 AWFILKHQQNILGYWRIDRCTLDQLASNYYG-SMSTPLNSPLRDPSQSEFRLARKLLLSV 140 Query: 162 LEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF 221 ++ + + LEVE ++ +M++ + + F+ + T CL Sbjct: 141 VDKLPNNTIDTSALEVELIKGQMELAVSAVW----------SFNFSQESQTPPMLFCL-- 188 Query: 222 SMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPG 281 E L L P ++ + D L +++ +++ ++ + + +LN G Sbjct: 189 --TEHLLGHLAEQPKKSEVSADLP--AKLAIWLKNLPVKIQVTLGQHNIPVHSLGQLNTG 244 Query: 282 DVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 D+LPI + + + P+ + + G ++ Sbjct: 245 DILPINLYPKTLLSIGSTPLFHATVHSHEGLMVAKLTQ 282 >UniRef50_A6D5X8 Flagellar basal-body rod protein B n=1 Tax=Vibrio shilonii AK1 RepID=A6D5X8_9VIBR Length = 255 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 33/236 (13%) Query: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE-- 145 + E A P + +++++ G P I + + PT+ R Sbjct: 47 SFSE-AHKPPKNSIKTVLNIEDF-GHVFFFIEPQAADILLYKHL--NTPSPTRKSKRSSS 102 Query: 146 ---FTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNT 202 T T R+ ++ + + VE+ P+DI Sbjct: 103 DTTLTQTHLRLFQKLTMAITNILT---ADASHYAVEHTDH-----------QPSDIGTTI 148 Query: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 F + L ++ LR+++ + + R+ ++ +++ +EL Sbjct: 149 TFS--FDEQQIDITFMLDDRYVKKLRDVMESNETFD--------REEILNNLRYQPVELG 198 Query: 263 ANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 L ++ KL PGD +P+ + V+G P + ++N + + I+ Sbjct: 199 CVMLHGQCTLHELSKLQPGDFMPMTLCKNLTVKVNGHPTFFGKLQSINSELGVEID 254 >UniRef50_A6Q2L3 Flagellar motor switch protein FliN n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2L3_NITSB Length = 133 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 2/101 (1%) Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 E + + + E+ + + L+++ + L ++LKLNP V+ Sbjct: 24 ELMAQQFAQESYGSETEEEDRIEKSKFSILLDVPLDVIVEIGSTQMPLEEVLKLNPNSVV 83 Query: 285 PIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 + + + + V+G + + T+ + L+I H++ P Sbjct: 84 ELNRFIHEPVDLKVNGKVIAKGELYTVKNNFGLKITHVVTP 124 >UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L5A1_THERP Length = 128 Score = 60.7 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 ++ ++EL A +R+ IL L PG V+ +++ + + ++ + + ++ Sbjct: 47 LRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDE 106 Query: 312 QYALRIEHLINP 323 ++A+RI +++P Sbjct: 107 KFAVRITEIVSP 118 >UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B8 Length = 301 Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 95/277 (34%), Gaps = 27/277 (9%) Query: 62 ARHFRMGLFNLLRRSPD---ITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVV 117 A L +L + + V P+ L P +++ ++ + G + V Sbjct: 15 AEAIAKVLDSLCPDQVERGDVAVLNPDTNPFA----TLEAPAVAVSVAYVDGVTGANVFV 70 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 + ++ G + P + + E + E + + + A + +V Sbjct: 71 MTAKGARRIAASMMG---QPPPEDDASELSVLELSAVAEAANQMMAAAAAAIGVVLGQDV 127 Query: 178 EYVRSEMQV-KFTNITTSPNDIV---VNTPFHVEIGNLTGEFNICLPFS-------MIEP 226 E E ++ + ++ F V + +P + ++ Sbjct: 128 EIAPPETRLFNSASEAIDAYEMAPHGARATFRV--CDEPCRLVQLVPNAFVVRMTRALDE 185 Query: 227 LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI 286 + V+ + D + + L ++ ++ + A + L Q + G VL + Sbjct: 186 MGVEHVSGGASDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLEL 245 Query: 287 EKP--DRIIAHVDGVPVLTSQYG-TLNGQYALRIEHL 320 ++ D + +V+G+ + T +G++ALR+ + Sbjct: 246 DRKADDPVDLYVNGLRFASGTLVLTDDGEWALRLAEV 282 >UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Deltaproteobacteria RepID=Q6MI47_BDEBA Length = 122 Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 44/111 (39%), Gaps = 9/111 (8%) Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQ-------VQHSQLELVANFADISLRLSQI 275 ++ L + LV + + + + + L++ + +S++ Sbjct: 5 TLDNLADQLVAEAAGMAESSGRKASSEMPTHKDRNLSLILDIPLKVSVELGRTKMPVSEL 64 Query: 276 LKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 L L G V+ + K + + +V+ + + +N ++ +R+ +I+P Sbjct: 65 LNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNEKFGVRLTDIISPA 115 >UniRef50_Q2CBY5 Possible flagellar switch protein FliM n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CBY5_9RHOB Length = 381 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 67/233 (28%), Gaps = 34/233 (14%) Query: 113 TGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA---- 168 +GL P L V+ G P R + + + ++ LE A Sbjct: 75 SGLAALDPELRSALVECQTTG-AVSPEPAPERPVSVADAALTRPVVDAFLEELLAAAAPT 133 Query: 169 ----WKAINPLEVEYVRSEMQVKFTNITTSPNDI-VVNTPFHVEIGNLTGEFNICLPFSM 223 W + ++ + +V + G G + LP Sbjct: 134 ALAGWGEGVATAGRLDG----ARGAGLSLAEAGYRLVALTVDLGAGTREGRLLVALPA-- 187 Query: 224 IEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDV 283 E +W R VQ + EL A L L + L PG V Sbjct: 188 ------------REAPAPTASDWSGQFARAVQAAPAELRAVLHRFELPLERAEALAPGQV 235 Query: 284 LPIEKPDRIIAHVDGVPVL---TSQYGTLNGQYALRIEHLINPILNSLNEEQP 333 LP+E ++G ++ G G A+R+ P L E P Sbjct: 236 LPLEGVTVASVRLEGAERALVGHARLGQSAGLKAIRLG---PPPRPELTERSP 285 >UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP8_ACTMD Length = 250 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNG 311 + ++E+ A L + ++L L+ G V+ +++ V+G + + ++ Sbjct: 171 LHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVVIDE 230 Query: 312 QYALRIEHLINPILN 326 + +R+ +I P Sbjct: 231 NFGIRVTEIIKPGDT 245 >UniRef50_A8LJC9 Putative uncharacterized protein n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LJC9_DINSH Length = 349 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 17/193 (8%) Query: 138 PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN--PLEVEYVRSEMQVKFTNITTSP 195 P + E R+ + +Q + ++ E + + + Y ++ ++ ++ S Sbjct: 117 PGEPEPRDASSIDQLLCRGFIERFFEAWGELLAGTSHEAWLAGYAPTDGMMQPDVLSVSA 176 Query: 196 NDI-----VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNL 250 DI ++ F G F++ LP S P LV ++ W + Sbjct: 177 PDIPYRLYLITAQFD---GLREVAFSVALPVS--RPRPADLVE--TGDAARSTGEWAKDW 229 Query: 251 VRQVQHSQLELVANFADISLRLSQILKLNPGD--VLPIEKPDRIIA-HVDGVPVLTSQYG 307 V S EL A + L L ++ + PGD +P + +G V T++ G Sbjct: 230 RAAVLESPAELDAVLCKLELSLDEVRRWAPGDRVSIPASALSSVSLGRRNGPSVATARLG 289 Query: 308 TLNGQYALRIEHL 320 G ALR+ + Sbjct: 290 QARGVRALRLNEI 302 >UniRef50_A6D2B3 Putative flagellar motor switch protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D2B3_9VIBR Length = 270 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 37/278 (13%) Query: 40 PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP 99 ++R + LE + + + L L+ + + + E + Sbjct: 18 LGKPIHIIRNK---LEELLINSCQQLSLELQAWLKTQ-QV-LVELDHVSLTELPQTNVDV 72 Query: 100 TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLK 159 T+++++ G V P+++ D + + G E T+++ R++ R+ K Sbjct: 73 TSVSVLKHSD-DGMLYVSMEPTMLMRLSDQFY----STSMERSGGELTNSDLRLLQRIAK 127 Query: 160 LALEGY--SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNI 217 A + WK Q +F I I + + + + + Sbjct: 128 CASQWIAPETTWK--------------QHEFEVIPG----IGIAAKLSIYVRSQQALLAV 169 Query: 218 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 277 L ++I+ L + L + + + + + + L + L L+Q+LK Sbjct: 170 TLDSALIQTLIDEL-------ELTPNPHMASDFNHALHKTPVRLNVQLSKTVLPLTQVLK 222 Query: 278 LNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYAL 315 L D+LPIE + ++ + T + GQ L Sbjct: 223 LKADDILPIELLNNAPVNIGKETLFTGRVAEQEGQLVL 260 >UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F0_COPPD Length = 287 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + ++ + + + +L L G ++ ++K + + V+G P+ + ++ Sbjct: 208 LLDVKVNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDE 267 Query: 312 QYALRIEHLINP 323 + +RI +I P Sbjct: 268 SFGVRILDIIAP 279 >UniRef50_C4Z8X6 Flagellar motor switch protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z8X6_EUBR3 Length = 197 Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 70/193 (36%), Gaps = 14/193 (7%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + RE + + + L +L++ +IT + + + + + + Sbjct: 9 ISRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVP 67 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT--HTEQRVINRMLKLALE 163 + K L GT L++ + + + + GG+G + + E T + +N+M Sbjct: 68 YTKGLDGTNLLIIKLNDALVIANLMMGGNGSNVSDMTLDEITLSAISEA-MNQMCGTIAT 126 Query: 164 GYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIV-----VNTPFHVEIGN-LTGEFNI 217 S + + S Q F P+++ V F + +G+ + + Sbjct: 127 SMSSLLNEPTDIGFPLINSSYQKTF----DIPDELCNGTDIVKVTFRLTVGDLIDSDLLQ 182 Query: 218 CLPFSMIEPLREL 230 P S+++ + + Sbjct: 183 LYPISIVKQIIKQ 195 >UniRef50_A6CER1 Flagellar motor switch protein fliN n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CER1_9PLAN Length = 226 Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 +Q+ +L+L L + ++LK+ G V+P++K D + V+G + + LN Sbjct: 153 LQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVLND 212 Query: 312 QYALRIEHLINPIL 325 + +R+ +I+P L Sbjct: 213 NFCVRVAEIISPEL 226 >UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B0 Length = 130 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 253 QVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLN 310 ++ +EL + + + L+L PG ++ + + + + V+G P+ + ++ Sbjct: 28 RLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVID 87 Query: 311 GQYALRIEHLI 321 ++ LRI ++ Sbjct: 88 EEFGLRITDVL 98 >UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UW94_9AQUI Length = 164 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPV 301 + L+ ++ L + + +++ +++ L PG VL +++ + + V+G + Sbjct: 67 ERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRETTEPVDIKVNGKLI 126 Query: 302 LTSQYGTLNGQYALRIEHLINPILNSLNEE 331 + + ++ +RI + + S+ + Sbjct: 127 AKGELVVVGEKFGVRITEIYSEERKSVFRD 156 >UniRef50_B5KD54 Surface presentation of antigens protein n=2 Tax=Octadecabacter antarcticus RepID=B5KD54_9RHOB Length = 330 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 19/214 (8%) Query: 113 TGLVVFSPSLVFIAVDN-LFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA 171 TGL + L V+ G P + R T + + L ++ Sbjct: 86 TGLFLLDQPLRSALVEMQTMG--SLLPPSDDQRRVTRVDAVMTLPFASQVLAELAEVGFG 143 Query: 172 INPLEVEYVRSEMQVKFTN---ITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 LE + N + + G GE I + P Sbjct: 144 AADLEPAAYDIGPIDDLRTAGLVMVQGNYRICRITIQMGGGETQGEMLIAM-----RPKV 198 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 ++ P + S W L VQ + EL A +++ + ++ G VL + Sbjct: 199 SVVTAPVKDTSG-----WSVALRDAVQEAPAELDAILTRMTMPIHKLEGFEVGQVLNLAG 253 Query: 289 PDRIIAHV---DGVPVLTSQYGTLNGQYALRIEH 319 + G+ + T++ G + G+ A+R++H Sbjct: 254 TTVGSVTLTGPGGIIITTARLGQVAGKRAVRVQH 287 >UniRef50_D0YPX2 Flagellar motor switch protein FliN n=2 Tax=Mobiluncus mulieris RepID=D0YPX2_9ACTO Length = 254 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 2/93 (2%) Query: 232 VNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP-- 289 P + R ++ + ++ L A L + +L L+PG V+ +++ Sbjct: 154 ATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAG 213 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 V+G + + ++ +Y +RI +++ Sbjct: 214 SAADVMVNGRLIAHGEIVVVDEEYGIRITEIVS 246 >UniRef50_B8HEJ4 Flagellar motor switch protein FliN n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ4_ARTCA Length = 238 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNG 311 + + ++ L + + L L PG V+ +++ ++G + + ++ Sbjct: 162 ISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVVVVDQ 221 Query: 312 QYALRIEHLIN 322 YA+RI +++ Sbjct: 222 DYAVRITRILD 232 >UniRef50_Q30RD7 Surface presentation of antigens (SPOA) protein n=15 Tax=Epsilonproteobacteria RepID=Q30RD7_SULDN Length = 111 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNG 311 + ++E +++ + L + +IL+L G ++ ++KP + + +V+G + + Sbjct: 29 LLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNGRILGRGEVMVYEK 88 Query: 312 QYALRIEHLINP--ILNSLNEE 331 A+RI +++ +L L++E Sbjct: 89 NLAIRINEVLDSSAVLYHLSKE 110 >UniRef50_A0LT68 Flagellar motor switch protein FliN n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT68_ACIC1 Length = 123 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 44/107 (41%), Gaps = 12/107 (11%) Query: 220 PFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLN 279 P + P+ + SR + +Q+ ++ + A + + ++L L Sbjct: 21 PAESVSPVNSAASAQTVRASR----------LELLQNVEMGVTAELGRTRMTVRELLSLA 70 Query: 280 PGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 PG V+ + + I +V+G + + ++ ++ +RI ++ P Sbjct: 71 PGMVVELNRAAGSPIDLYVNGTLIARGEVVVIDEEFGVRISEIVGPD 117 >UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein n=4 Tax=Deltaproteobacteria RepID=Q30VB8_DESDG Length = 175 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Query: 228 RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 R++ E +++ + + + L++ A L ++++L+L G V+ + Sbjct: 70 RDMEFKDLTEEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELN 129 Query: 288 K--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 K + + +V+G V + +N ++ +R+ +I+PI Sbjct: 130 KLAGEPLEIYVNGKLVARGEAVVINEKFGVRLTDIISPI 168 >UniRef50_B7RGB2 Surface presentation of antigens protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RGB2_9RHOB Length = 413 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%) Query: 201 NTPFHVEI--GNLTGEFNICLPFSMIEPLRELLVNPPLEN--SRNEDQNWRDNLVRQVQH 256 V++ G GE +CLP P R + P + S D L V Sbjct: 173 IIRMTVDMAQGARQGELVLCLPV----PPRHAVAAPTSPDAGSAAADPVAPRTLSASVLQ 228 Query: 257 SQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHV---DGVPVLTSQYGTLNGQY 313 + EL+ + A +++ + L+ G VLP+ A V DG + G +G Sbjct: 229 LKAELMVSLAQVTMSIRDAGGLHVGQVLPLGSVSFDAAQVRTKDGRILGVGSLGQSDGMR 288 Query: 314 ALRIEHLIN 322 A+R++H + Sbjct: 289 AMRLKHRVK 297 >UniRef50_A5P6I7 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6I7_9SPHN Length = 298 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 80/275 (29%), Gaps = 16/275 (5%) Query: 52 QALEIINERFARHFRMGLFNLLRRSPD-----ITVGAIRIQPYHEFARNLPVPTNLNLIH 106 L+I RF F L D +V A + P ++ + + Sbjct: 28 PELDIEFARFVSGFAENAQLQLAELCDDRGIATSVVATELLPVGDWYEQMGNARRHSYFS 87 Query: 107 LKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYS 166 L LV + + + GG G ++ + R ++ E Sbjct: 88 LGQESRGILVSVGIGELVAQFERILGGSGEVDERLGILPASA--ARFAHQFDDRVCEAMR 145 Query: 167 DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG--NLTGEFNICLPFSMI 224 + + E + + + V + + + + SMI Sbjct: 146 RT-SDRREISASAIGDEAE---DVAPFALGEKVWTATIAISSSKSDRPWQVRLAACQSMI 201 Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 L E P + + L L A D+ + ++++ L PG V+ Sbjct: 202 AELVEKRAASPATGRTIGARGIGG---SAIADVDLPLRAVLVDVPMSIARLASLEPGAVI 258 Query: 285 PIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 + + + + + G L+ + AL + H Sbjct: 259 QVAVNRSVPLQIGQLTIAHGCVGELDDRVALELTH 293 >UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1A4_SPHTD Length = 144 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 ++ ++EL A +++ IL L PG V+ + + + + V+ + + ++ Sbjct: 66 LRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDE 125 Query: 312 QYALRIEHLINP 323 ++A+R+ ++ P Sbjct: 126 KFAVRVVEIVPP 137 >UniRef50_C2BUL2 Flagellar motor switch protein FliN n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BUL2_9ACTO Length = 250 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAH 295 R ++ + ++ L A L + +L L+PG V+ +++ Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLIN 322 V+G + + ++ +Y +RI +++ Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240 >UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKI4_9BACT Length = 384 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 15/221 (6%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EI+ALL G + + + +L+ALE + Sbjct: 1 MSDELLSQDEINALLEGSLAGGSDDGGGGDSPG------------LTQAQLEALEDLAGM 48 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL-PVPTNLNLIHLKPLRGTGL-VVF 118 F+ + L R + + I + + ++ L + + VV Sbjct: 49 FSDATTGVIGMLAGREVSVQISEIGEKGQSDVVGSIGGNRNLLFSVRCDGFDDAPVSVVM 108 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 + V + D + GG+G+ F + Q +++++ A+ S K + + Sbjct: 109 NEGGVVLLADLMMGGEGKDLPDEANELFVNAAQEGLSQVVGSAMTSLSGKLKGRKAIPTD 168 Query: 179 YVRSEMQVKFTNITTSPNDIVVN-TPFHVEIGNLTGEFNIC 218 + + +D+ V V I L + Sbjct: 169 PASEVTEDDWLLFPNMESDVPVWYISMEVTIEGLDSFKSFI 209 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + + + + ++L PG V+ ++K + + V+G + + ++ Sbjct: 304 IADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE 363 Query: 312 QYALRIEHLIN 322 + +R+ ++N Sbjct: 364 NFGVRVTEILN 374 >UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Proteobacteria RepID=C6BUR6_DESAD Length = 229 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 228 RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 R+ ++N + + + L++ A + ++++L+L G V+ + Sbjct: 124 RDADFKDLTNEAKNPRHDGSRRDLDFILDIPLDVSAELGRAKMLINELLQLGTGSVVELT 183 Query: 288 K--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 K + + +V+G V + +N ++ +R+ +I+PI Sbjct: 184 KLAGEPLEIYVNGKLVARGEAVVINEKFGIRLTDIISPI 222 >UniRef50_C1ZEF0 Flagellar motor switch protein FliN n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEF0_PLALI Length = 193 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 252 RQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTL 309 +Q +L++ L + ++++L G V+P++K D + V+G + + L Sbjct: 118 DALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVL 177 Query: 310 NGQYALRIEHLINPIL 325 N + +RI ++ Sbjct: 178 NDNFCVRIAEILTQDG 193 >UniRef50_A4Y0Q1 Surface presentation of antigens (SPOA) protein n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0Q1_PSEMY Length = 321 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 85/256 (33%), Gaps = 46/256 (17%) Query: 55 EIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTG 114 II++ F R++R+ L LLR V L L G Sbjct: 86 RIISDYFLRNYRINL-ELLRVDVHEQVDKEAE--------------CLYRSTL----GKV 126 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA------ 168 +L+ A++ +GG E + +EQR+ R+ + ++ + Sbjct: 127 GFAIDRALLTEALECYYGGT--CLPNHEAPPVSTSEQRMRTRLGLDVSQLFARSILAGQT 184 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 + + P + Y + + V F I I L +++ L Sbjct: 185 FGKLEPYDNAYEE------------ATWEYVAEFHFTSHITGSQASIFIYLDTQLVDELT 232 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 L P + Q++ + L A + + L+Q+L L PGD+LP+ Sbjct: 233 NRLTPPAPVAQSGNS-------LNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPMRL 285 Query: 289 PDRIIAHVDGVPVLTS 304 +R ++ + Sbjct: 286 LERCDVQINQQKLFRG 301 >UniRef50_Q2RKD7 Flagellar motor switch FliN n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKD7_MOOTA Length = 124 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 252 RQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTL 309 +++ L L A + + +IL L G V+ ++K + + V+ +P+ + + Sbjct: 45 KRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVI 104 Query: 310 NGQYALRI 317 N + +RI Sbjct: 105 NDAFGVRI 112 >UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundicola AmH RepID=B9L5V0_NAUPA Length = 270 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/268 (9%), Positives = 92/268 (34%), Gaps = 21/268 (7%) Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E + + L+ +P+I++ + + P + +I +KP +G L + Sbjct: 6 ELLINEIKSTIEGLIGIAPEISILSET----RDLGPTKPPYAKI-VIRVKP-KGEILFLI 59 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 + D + G+G T++ + + +I+ + A + L+ E Sbjct: 60 PAEIATALGDLMLAGEGTPKTELNDDDLDAI-KEIISNVFGALKTTLG-AQDNMPNLDFE 117 Query: 179 YVRSEMQVKFTNITTSP-NDIVVNTPFHVEIGNLTGEFNICLP---FSMIEPLRELLVNP 234 F ++ ++ ++ + + ++ P + + Sbjct: 118 IANV-----FAVDKEEDISEYAYAINMECKVNDVVKVCQVVFDESVYDILNPSTKSEGSS 172 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRI 292 + ++ + + +L+L + L ++ ++ G ++ + + + + Sbjct: 173 TPSKAVELKGEMKN--LEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEPL 230 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHL 320 ++ + + ++G + ++I + Sbjct: 231 DILIEDKKIGEGEVVIVDGNFGIQITSI 258 >UniRef50_A4ENM8 Possible flagellar switch protein FliM n=2 Tax=Rhodobacteraceae RepID=A4ENM8_9RHOB Length = 364 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 88/281 (31%), Gaps = 32/281 (11%) Query: 62 ARHFRMGLFNLLRRSPD----ITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLV 116 +R R+ L + + A + + L + L L G + Sbjct: 29 SRAVRLALTKAANDTVGLVLTVQSVAEEVTSLDDMLGTLADELMLVALERDGGLAGLIAL 88 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA-------- 168 + ++ + E R T T++ + + +L+ L + A Sbjct: 89 DMEMRAAVLEMETM---GAVLAHPAEARAPTLTDKTLCDPLLQAFLSAFPLAVLDTPLEG 145 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDI-VVNTPFHVEIGNLTGEFNICLPFSMIEPL 227 W L + + + + + D +V + + E I LP Sbjct: 146 WMDSVVLGHKIEST----RAAGLVLADRDYRIVRLSVDLGVAERQAELVIVLPV------ 195 Query: 228 RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 + P E + +W + +V + L A + L+ L G VLP+ Sbjct: 196 --VQHAPEPETTPETFFDWDSDFQDRVSDAPARLDALLHRFPISLATAQGLQVGSVLPLP 253 Query: 288 --KPDRIIAHV-DGVPVLTSQYGTLNGQYALRIEHLINPIL 325 + + DG V ++ G + G A+R+E P L Sbjct: 254 GCTVNSVRLLSPDGHEVAQAKLGQIGGYRAVRLEAAPAPQL 294 >UniRef50_Q67MU5 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67MU5_SYMTH Length = 227 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 249 NLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQY 306 L + +L L L L +IL + PG V+ +++ + + V+G+P +T++ Sbjct: 145 ALRGVLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEV 204 Query: 307 GTLNGQYALRIEH 319 + +Y +RI Sbjct: 205 IAIGEKYGIRIVE 217 >UniRef50_Q3ADD4 Flagellar motor switch protein FliN n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADD4_CARHZ Length = 124 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNG 311 + + ++E+VA L + Q+L L GDVL ++K D I +DG + +N Sbjct: 43 LNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINE 102 Query: 312 QYALRIE 318 Y +RI Sbjct: 103 MYGVRIT 109 >UniRef50_C9R9Y4 Surface presentation of antigens (SPOA) protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R9Y4_AMMDK Length = 114 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 228 RELLVNPPLENSRNEDQNWRDNLVRQVQ---HSQLELVANFADISLRLSQILKLNPGDVL 284 + ++ + + + ++ W ++ LE+ A + +L + ++L+L G V+ Sbjct: 1 MQAKISKVVFSPFSTEKAWEPKATTALELLHGVTLEVTALLGEATLTVQELLELREGSVI 60 Query: 285 PIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 +++ + + +DG + LN ++ +R+ + P Sbjct: 61 RLDRVAGEAVDLLLDGQKFGRGEVMVLNERFVVRVLQVFPP 101 >UniRef50_Q12HY9 Putative uncharacterized protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12HY9_SHEDO Length = 293 Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 16/187 (8%) Query: 133 GDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNIT 192 G + P R+ + +E R+I R+ E + P E + N Sbjct: 112 GSQKNPLSSPLRQPSQSEFRLIKRLFINVFE--------VLPFEELDLEELEIELVKNHA 163 Query: 193 TSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVR 252 T D V F G+L +I + S++ ++++ P+ L Sbjct: 164 TIEADAVWALEFT--QGSLAPALHIYMASSLLGLVQDMPNQKPISTDLPT------KLAN 215 Query: 253 QVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQ 312 + ++L + + I ++ GD+LPI + + V + ++ + +GQ Sbjct: 216 WLTQMPVKLRLTLGHQDIPVDSIDQMKAGDILPINLYPKSVLAVGTKALFSATVHSHDGQ 275 Query: 313 YALRIEH 319 ++ Sbjct: 276 MLAKLTQ 282 >UniRef50_Q0C2D2 Flagellar motor switch protein FliN n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C2D2_HYPNA Length = 89 Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 249 NLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQY 306 L + + + + + + + +++ L+PG+++ +E+ + + +V G V + Sbjct: 8 ALEKMLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKL 67 Query: 307 GTLNGQYALRIEHLINP 323 +GQ + + +I+ Sbjct: 68 VVTDGQLGVTLSEIIDS 84 >UniRef50_B1K3A5 Surface presentation of antigens (SPOA) protein n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1K3A5_BURCC Length = 290 Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 18/210 (8%) Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK 170 RG V L+ + +G T E+R + L ++ A Sbjct: 95 RGQISVRCDRELLLALLACHYGTSLDEAVPTAPAPETGAERRFSAQQHTALLTAFASAML 154 Query: 171 AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 230 ++E ++ P V+ + + G+ L ++ L Sbjct: 155 G--------DQAEPFSPNGDMLPGPGVRVLRMTISDRLRKVGGDVEFALDDMWLDHLFAR 206 Query: 231 LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD 290 L L + + Q + + + ++RL ++L++ PGDVLP+ P+ Sbjct: 207 LDAQHLRPAPDSAQANVS--------IPVTISVHVLSKNMRLDELLRMRPGDVLPVRLPE 258 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + V+ V + + G AL I Sbjct: 259 TVDVLVNNVRLYRAALAEHQG--ALWITSF 286 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P06974 Flagellar motor switch protein fliM n=208 Tax=Pr... 331 2e-89 UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natr... 305 2e-81 UniRef50_A3EQZ9 Flagellar motor switch protein FliM n=2 Tax=Lept... 297 3e-79 UniRef50_B5YIZ4 Flagellar motor switch protein FliM n=1 Tax=Ther... 293 8e-78 UniRef50_Q0K3R1 Flagellar motor switch protein n=57 Tax=Proteoba... 289 7e-77 UniRef50_D2T5W7 Flagellar motor switch protein FliM n=2 Tax=Erwi... 286 7e-76 UniRef50_Q2LT03 Flagellar motor switch protein n=1 Tax=Syntrophu... 286 9e-76 UniRef50_C6HWH3 Flagellar motor switch protein FliM n=1 Tax=Lept... 286 9e-76 UniRef50_B0THB4 Flagellar motor switch protein flim n=5 Tax=Clos... 286 1e-75 UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clo... 283 6e-75 UniRef50_Q6MI46 Flagellar motor switch protein FliM n=1 Tax=Bdel... 279 9e-74 UniRef50_C8WWF8 Flagellar motor switch protein FliM n=2 Tax=Alic... 279 1e-73 UniRef50_B8FTQ9 Flagellar motor switch protein FliM n=3 Tax=Clos... 279 1e-73 UniRef50_C1TKI5 Flagellar motor switch protein FliM n=1 Tax=Deth... 277 4e-73 UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halo... 275 1e-72 UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Ther... 274 3e-72 UniRef50_Q51465 Flagellar motor switch protein fliM n=158 Tax=Pr... 273 9e-72 UniRef50_A8F895 Flagellar motor switch protein FliM n=10 Tax=The... 271 3e-71 UniRef50_C0GJF2 Flagellar motor switch protein FliM n=1 Tax=Deth... 269 9e-71 UniRef50_C4Z5H1 Flagellar motor switch protein FliM n=7 Tax=Bact... 268 2e-70 UniRef50_Q1NVK6 Surface presentation of antigens (SPOA) protein:... 266 6e-70 UniRef50_P23453 Flagellar motor switch protein fliM n=32 Tax=Bac... 266 7e-70 UniRef50_A5D0K2 Flagellar motor switch protein n=1 Tax=Pelotomac... 266 7e-70 UniRef50_A6M1D3 Flagellar motor switch protein FliM n=26 Tax=Clo... 266 7e-70 UniRef50_A9KNE7 Flagellar motor switch protein FliM n=1 Tax=Clos... 266 1e-69 UniRef50_C0QAJ4 FliM n=1 Tax=Desulfobacterium autotrophicum HRM2... 265 1e-69 UniRef50_D2R066 Flagellar motor switch protein FliM n=4 Tax=Plan... 264 3e-69 UniRef50_Q3ADB8 Flagellar motor switch protein FliM n=6 Tax=Clos... 262 9e-69 UniRef50_B8FK38 Flagellar motor switch protein FliM n=1 Tax=Desu... 262 1e-68 UniRef50_B8I3P2 Flagellar motor switch protein FliM n=2 Tax=Clos... 261 2e-68 UniRef50_Q57511 Flagellar motor switch protein fliM n=33 Tax=Spi... 260 5e-68 UniRef50_C6BTE8 Flagellar motor switch protein FliM n=13 Tax=Des... 258 2e-67 UniRef50_Q31FP9 Flagellar motor switch protein FliM n=1 Tax=Thio... 258 2e-67 UniRef50_C1SNF9 Flagellar motor switch protein FliM n=1 Tax=Deni... 258 2e-67 UniRef50_A6TKX0 Flagellar motor switch protein FliM n=4 Tax=Clos... 256 1e-66 UniRef50_A9BEY4 Flagellar motor switch protein FliM n=1 Tax=Petr... 254 2e-66 UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobac... 254 3e-66 UniRef50_UPI00016C0DBD flagellar motor switch protein FliM n=1 T... 251 2e-65 UniRef50_Q30SP5 Surface presentation of antigens (SPOA) protein:... 249 1e-64 UniRef50_C2ED82 Flagellar motor switch protein FliM n=5 Tax=Lact... 246 9e-64 UniRef50_B5Y7E9 Flagellar motor switch protein FliM n=1 Tax=Copr... 246 1e-63 UniRef50_C8W1I5 Flagellar motor switch protein FliM n=1 Tax=Desu... 245 2e-63 UniRef50_C6NYG8 Flagellar motor switch protein FliM n=1 Tax=Acid... 244 2e-63 UniRef50_Q2RZE2 Flagellar motor switch protein FliM n=2 Tax=Rhod... 242 1e-62 UniRef50_B3EAW6 Flagellar motor switch protein FliM n=9 Tax=Desu... 241 3e-62 UniRef50_Q7UNV1 Flagellar motor switch protein fliM n=1 Tax=Rhod... 240 6e-62 UniRef50_A8U604 Flagellar motor switch protein fliM n=1 Tax=Carn... 239 1e-61 UniRef50_C6N2P9 Flagellar motor switch protein FliM n=1 Tax=Legi... 235 2e-60 UniRef50_Q5ZUK6 Flagellar protein n=4 Tax=Legionella pneumophila... 232 9e-60 UniRef50_B0MPD5 Putative uncharacterized protein n=1 Tax=Eubacte... 231 3e-59 UniRef50_Q1Q6R4 Similar to flagellar motor switch n=1 Tax=Candid... 229 1e-58 UniRef50_Q2NX04 Flagellar motor switch protein FliM n=1 Tax=Soda... 229 1e-58 UniRef50_B6IQ99 Flagellar motor switch protein FliM n=2 Tax=Rhod... 226 7e-58 UniRef50_A9HHK3 Flagellar motor switch protein FliM n=1 Tax=Gluc... 224 2e-57 UniRef50_A8ERA3 Flagellar motor switch protein FliM n=1 Tax=Arco... 222 1e-56 UniRef50_Q5FT23 Flagellar motor switch protein FliM n=1 Tax=Gluc... 221 4e-56 UniRef50_C8WYW2 Flagellar motor switch protein FliM n=1 Tax=Desu... 220 6e-56 UniRef50_A0LT67 Flagellar motor switch protein FliM n=1 Tax=Acid... 216 7e-55 UniRef50_P34009 Flagellar motor switch protein fliM n=45 Tax=Alp... 214 3e-54 UniRef50_B0P9Y0 Putative uncharacterized protein n=1 Tax=Anaerot... 213 7e-54 UniRef50_B1ZR35 Flagellar motor switch protein FliM n=3 Tax=Verr... 212 1e-53 UniRef50_Q1IR62 Flagellar motor switch protein FliM n=1 Tax=Cand... 212 2e-53 UniRef50_Q1JZS7 Flagellar motor switch protein FliM n=1 Tax=Desu... 211 2e-53 UniRef50_B9L5A2 Flagellar motor switch protein FliM n=2 Tax=Ther... 210 4e-53 UniRef50_A5V6A6 Flagellar motor switch protein FliM n=1 Tax=Sphi... 210 4e-53 UniRef50_C2KZ05 Flagellar motor switch protein FliM n=1 Tax=Orib... 210 4e-53 UniRef50_Q0FMH0 Flagellar motor switch protein fliM n=1 Tax=Rose... 209 1e-52 UniRef50_B9KJD8 Flagellar switch protein n=8 Tax=Rhodobacterales... 209 1e-52 UniRef50_A0LDL0 Flagellar motor switch protein FliM n=4 Tax=cell... 209 1e-52 UniRef50_B9IWG1 Flagellar motor switch protein FliM n=70 Tax=Bac... 208 2e-52 UniRef50_Q1YV70 Flagellar motor switch protein FliM n=1 Tax=gamm... 207 6e-52 UniRef50_A6Q2L2 Flagellar motor switch protein FliM n=4 Tax=Bact... 207 6e-52 UniRef50_A6DWS9 Flagellar switch protein FliM n=1 Tax=Roseovariu... 206 1e-51 UniRef50_D2S983 Flagellar motor switch protein FliM n=1 Tax=Geod... 205 1e-51 UniRef50_Q4JMS1 Predicted flagellar motor switch protein n=2 Tax... 205 1e-51 UniRef50_C1A553 Flagellar motor switch protein FliM n=1 Tax=Gemm... 204 3e-51 UniRef50_C8WBT4 Surface presentation of antigens (SPOA) protein ... 204 5e-51 UniRef50_Q0EZ62 Flagellar motor switch protein FliM n=1 Tax=Mari... 203 9e-51 UniRef50_B2V6S5 Flagellar motor switch protein FliM n=2 Tax=Sulf... 203 9e-51 UniRef50_B6R823 Flagellar motor switch protein FliM n=1 Tax=Pseu... 202 1e-50 UniRef50_Q01VK1 Flagellar motor switch protein FliM n=1 Tax=Cand... 202 2e-50 UniRef50_A9W0F0 Flagellar motor switch protein FliM n=7 Tax=Alph... 202 2e-50 UniRef50_C7R0I8 Flagellar motor switch protein FliM n=1 Tax=Jone... 201 3e-50 UniRef50_Q3A5D9 Flagellar biosynthesis protein, component of mot... 200 5e-50 UniRef50_A5FX59 Flagellar motor switch protein FliM n=1 Tax=Acid... 199 9e-50 UniRef50_A1SEN6 Flagellar motor switch protein FliM n=1 Tax=Noca... 199 9e-50 UniRef50_C0C1P2 Putative uncharacterized protein n=1 Tax=Clostri... 199 1e-49 UniRef50_B4U6V4 Flagellar motor switch protein FliM n=1 Tax=Hydr... 199 2e-49 UniRef50_A8UVU1 Flagellar motor switch protein FliM n=1 Tax=Hydr... 198 3e-49 UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion... 198 3e-49 UniRef50_B2IJZ9 Flagellar motor switch protein FliM n=1 Tax=Beij... 195 1e-48 UniRef50_B1M7I2 Flagellar motor switch protein FliM n=4 Tax=Alph... 195 2e-48 UniRef50_D1BCL9 Flagellar motor switch protein n=1 Tax=Sanguibac... 194 4e-48 UniRef50_C6WJP9 Flagellar motor switch protein FliM n=1 Tax=Acti... 193 1e-47 UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotro... 192 1e-47 UniRef50_B8HEJ5 Surface presentation of antigens (SPOA) protein ... 191 2e-47 UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=... 191 3e-47 UniRef50_A3U1I7 Flagellar motor switch protein FliM n=1 Tax=Ocea... 191 3e-47 UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Therm... 190 6e-47 UniRef50_Q6AJS9 Related to flagellar motor switch protein (FliM)... 190 8e-47 UniRef50_A6W8L0 Flagellar motor switch protein FliM n=1 Tax=Kine... 190 8e-47 UniRef50_B8DI83 Flagellar motor switch protein n=18 Tax=Listeria... 188 2e-46 UniRef50_C5EFH3 Flagellar motor switch protein FliM n=3 Tax=Clos... 188 3e-46 UniRef50_Q21AD3 Flagellar motor switch protein FliM n=3 Tax=Brad... 187 6e-46 UniRef50_Q2CGI2 Possible flagellar motor switch protein FliM n=1... 187 6e-46 UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion... 186 7e-46 UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridiu... 185 1e-45 UniRef50_C1F3H9 Putative flagellar motor switch protein FliM n=1... 185 2e-45 UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydo... 184 3e-45 UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=... 184 4e-45 UniRef50_B8EL07 Surface presentation of antigens (SPOA) protein ... 182 1e-44 UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion... 179 1e-43 UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobaci... 179 1e-43 UniRef50_A9DR47 Flagellar motor switch protein n=1 Tax=Oceanibul... 178 3e-43 UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desul... 177 6e-43 UniRef50_Q1NGL0 Flagellar switch protein n=1 Tax=Sphingomonas sp... 176 8e-43 UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Therm... 176 1e-42 UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion... 175 2e-42 UniRef50_B4UFI3 Flagellar motor switch protein FliM n=3 Tax=Anae... 175 2e-42 UniRef50_D0I456 Flagellar motor switch protein FliM n=2 Tax=Vibr... 175 2e-42 UniRef50_UPI0001C312B7 surface presentation of antigens (SPOA) p... 172 1e-41 UniRef50_A4A5Y9 Flagellar motor switch protein FliM n=2 Tax=uncl... 170 5e-41 UniRef50_A3T063 Flagellar motor switch protein n=2 Tax=Sulfitoba... 170 6e-41 UniRef50_A1UTV5 Flagellar motor switch protein FliM n=1 Tax=Bart... 169 1e-40 UniRef50_Q8D3E8 FliM protein n=1 Tax=Wigglesworthia glossinidia ... 167 4e-40 UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halot... 167 5e-40 UniRef50_D2LCZ9 Flagellar motor switch protein FliM n=1 Tax=Rhod... 165 2e-39 UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmi... 164 3e-39 UniRef50_Q1GNY8 Surface presentation of antigens (SPOA) protein ... 164 4e-39 UniRef50_C2KTP4 Flagellar motor switch protein FliM n=3 Tax=Mobi... 164 4e-39 UniRef50_A6X6R4 Surface presentation of antigens (SPOA) protein ... 158 2e-37 UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Ther... 157 6e-37 UniRef50_A0Z384 Flagellar motor switch protein n=1 Tax=marine ga... 157 8e-37 UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion... 155 3e-36 UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema... 153 9e-36 UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion... 152 2e-35 UniRef50_A4J3G9 CheC, inhibitor of MCP methylation n=2 Tax=Desul... 147 6e-34 UniRef50_A0Y177 Flagellar motor switch protein M n=1 Tax=Alterom... 146 1e-33 UniRef50_C6QEZ9 Surface presentation of antigens (SPOA) protein ... 145 1e-33 UniRef50_C7M221 Surface presentation of antigens (SPOA) protein ... 144 3e-33 UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Baci... 144 3e-33 UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax... 144 4e-33 UniRef50_Q18D13 Putative flagellar motor switch protein n=5 Tax=... 144 4e-33 UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brev... 142 1e-32 UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion... 142 1e-32 UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion... 142 2e-32 UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion... 139 2e-31 UniRef50_Q1YLL0 Possible flagellar motor switch protein fliM n=1... 138 2e-31 UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lact... 138 3e-31 UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clos... 137 4e-31 UniRef50_P57182 Flagellar motor switch protein fliM n=4 Tax=Buch... 137 5e-31 UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion... 137 5e-31 UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clost... 137 8e-31 UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion... 135 2e-30 UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicute... 135 2e-30 UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Ther... 134 4e-30 UniRef50_Q8GKQ6 FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP... 134 5e-30 UniRef50_Q98HE6 Flagellar motor switch protein; FliM n=2 Tax=Mes... 133 6e-30 UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridi... 132 2e-29 UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion... 130 5e-29 UniRef50_UPI0001910677 flagellar motor switch protein FliM n=2 T... 130 9e-29 UniRef50_Q0G106 Putative uncharacterized protein n=1 Tax=Fulvima... 129 1e-28 UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ... 128 3e-28 UniRef50_Q11LL7 Surface presentation of antigens (SPOA) protein ... 128 3e-28 UniRef50_Q8KA39 Flagellar motor switch protein fliM n=1 Tax=Buch... 128 4e-28 UniRef50_A6BA62 Flagellar motor switch protein FliM n=1 Tax=Vibr... 126 1e-27 UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moore... 125 2e-27 UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria ... 125 2e-27 UniRef50_B1I5G4 CheC, inhibitor of MCP methylation n=1 Tax=Candi... 125 2e-27 UniRef50_C6XFK7 Flagellar C-ring protein n=1 Tax=Candidatus Libe... 125 3e-27 UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspi... 125 3e-27 UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clos... 124 3e-27 UniRef50_O54246 Flagellar motor switch protein fliM n=3 Tax=Rhiz... 121 4e-26 UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campyloba... 121 4e-26 UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria... 120 6e-26 UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion... 119 2e-25 UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Hel... 119 2e-25 UniRef50_Q44457 Flagellar motor switch protein fliM n=11 Tax=Rhi... 117 6e-25 UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulf... 117 9e-25 UniRef50_Q12PK7 Surface presentation of antigens (SPOA) protein ... 115 2e-24 UniRef50_A9CYK4 Flagellar motor switch transmembrane protein n=1... 114 4e-24 UniRef50_Q89AZ4 Flagellar motor switch protein fliM n=1 Tax=Buch... 113 1e-23 UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas... 113 1e-23 UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Heli... 113 1e-23 UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding... 113 1e-23 UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibac... 113 1e-23 UniRef50_Q87FY0 Lateral flagellar FliM-like motor switch protein... 111 4e-23 UniRef50_UPI00016C4202 hypothetical protein GobsU_09169 n=1 Tax=... 110 9e-23 UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundi... 106 9e-22 UniRef50_B2TXI0 Flagellar motor switch protein FliM n=4 Tax=Ente... 106 1e-21 UniRef50_A3WGR7 Putative uncharacterized protein n=1 Tax=Erythro... 106 1e-21 UniRef50_Q0C4V9 SPOA domain protein n=1 Tax=Hyphomonas neptunium... 105 2e-21 UniRef50_A4SI06 Lateral flagellar motor switch protein, LfiM n=2... 103 1e-20 UniRef50_A6F9R6 Putative uncharacterized protein n=1 Tax=Moritel... 101 2e-20 UniRef50_B9KJS2 Surface presentation of antigens (SPOA) protein ... 101 4e-20 UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=... 100 6e-20 UniRef50_A1RF66 Putative uncharacterized protein n=3 Tax=Shewane... 100 1e-19 UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Ta... 100 1e-19 UniRef50_Q165H9 Putative uncharacterized protein n=2 Tax=Roseoba... 99 2e-19 UniRef50_D0MGA9 Flagellar motor switch protein FliN n=1 Tax=Rhod... 99 2e-19 UniRef50_A4Y0Q1 Surface presentation of antigens (SPOA) protein ... 99 3e-19 UniRef50_Q28NV3 Putative uncharacterized protein n=1 Tax=Jannasc... 98 4e-19 UniRef50_C4Z8X6 Flagellar motor switch protein n=1 Tax=Eubacteri... 96 1e-18 UniRef50_B8CVM7 Putative uncharacterized protein n=1 Tax=Shewane... 96 2e-18 UniRef50_C1SNF8 Flagellar motor switch protein FliN n=1 Tax=Deni... 96 2e-18 UniRef50_B0MPD4 Putative uncharacterized protein n=1 Tax=Eubacte... 95 2e-18 UniRef50_B0P9X9 Putative uncharacterized protein n=1 Tax=Anaerot... 95 3e-18 UniRef50_B6BN04 Flagellar motor switch FliN n=1 Tax=Campylobacte... 95 4e-18 UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Deth... 95 4e-18 UniRef50_B1K3A5 Surface presentation of antigens (SPOA) protein ... 94 6e-18 UniRef50_A8GYM9 Putative uncharacterized protein n=3 Tax=Shewane... 94 6e-18 UniRef50_Q1ZWR7 Putative flagellar motor switch protein n=2 Tax=... 94 1e-17 UniRef50_O67283 Putative uncharacterized protein n=1 Tax=Aquifex... 93 1e-17 UniRef50_A8EW52 Flagellar motor switch protein FliY n=1 Tax=Arco... 93 1e-17 UniRef50_A1WGY8 Flagellar motor switch protein FliN n=19 Tax=Pro... 93 2e-17 UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kine... 92 2e-17 UniRef50_A5P6I7 Putative uncharacterized protein n=1 Tax=Erythro... 92 3e-17 UniRef50_B9Z4S5 Surface presentation of antigens (SPOA) protein ... 92 3e-17 UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pp... 92 4e-17 UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pp... 91 4e-17 UniRef50_A1SEN5 Flagellar motor switch protein FliN n=1 Tax=Noca... 91 6e-17 UniRef50_B6WWJ4 Putative uncharacterized protein n=1 Tax=Desulfo... 91 7e-17 UniRef50_A3VIM0 Possible flagellar switch protein FliM n=1 Tax=R... 90 1e-16 UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Delt... 90 1e-16 UniRef50_C7R0I7 Flagellar motor switch protein FliN n=1 Tax=Jone... 89 2e-16 UniRef50_C7DD19 Putative uncharacterized protein n=1 Tax=Thalass... 88 3e-16 UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Pro... 88 3e-16 UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein ... 88 3e-16 UniRef50_A9FKL0 Surface presentation of antigens (SPOA) protein ... 88 3e-16 UniRef50_P26419 Flagellar motor switch protein fliN n=125 Tax=En... 88 4e-16 UniRef50_P15070 Flagellar motor switch protein fliN n=15 Tax=Pro... 88 4e-16 UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivir... 87 7e-16 UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobac... 87 7e-16 UniRef50_Q3BU42 Flagellar motor switch/type III secretory pathwa... 87 8e-16 UniRef50_Q0AEF2 Flagellar motor switch protein FliN n=12 Tax=Pro... 87 9e-16 UniRef50_B9PA59 Predicted protein n=2 Tax=cellular organisms Rep... 87 1e-15 UniRef50_B5KD54 Surface presentation of antigens protein n=2 Tax... 87 1e-15 UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 T... 87 1e-15 UniRef50_P35539 Flagellar motor switch protein fliN (Fragment) n... 87 1e-15 UniRef50_Q51466 Flagellar motor switch protein fliN n=23 Tax=Pro... 87 1e-15 UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Spha... 86 1e-15 UniRef50_Q1D0N5 Type III secretion system apparatus protein YscQ... 86 1e-15 UniRef50_Q0FKH8 Possible flagellar switch protein FliM n=3 Tax=R... 86 2e-15 UniRef50_A6D2B3 Putative flagellar motor switch protein n=1 Tax=... 86 2e-15 UniRef50_A6D5X8 Flagellar basal-body rod protein B n=1 Tax=Vibri... 86 2e-15 UniRef50_Q3SIG7 Flagellar motor switch/type III secretory pathwa... 86 2e-15 UniRef50_Q01PP4 Flagellar motor switch protein FliN n=1 Tax=Cand... 86 2e-15 UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Acti... 85 2e-15 UniRef50_D0CWA9 Surface presentation of antigens protein n=1 Tax... 85 3e-15 UniRef50_D1BCL8 Flagellar motor switch protein FliN n=1 Tax=Sang... 85 4e-15 Sequences not found previously or not previously below threshold: >UniRef50_P06974 Flagellar motor switch protein fliM n=208 Tax=Proteobacteria RepID=FLIM_ECOLI Length = 334 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 334/334 (100%), Positives = 334/334 (100%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER Sbjct: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP Sbjct: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV Sbjct: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR Sbjct: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP Sbjct: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK Sbjct: 301 VLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 >UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A358_NATTJ Length = 333 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 11/337 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVK--DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M + +LSQ+EID LL+ S E + ++PYD + +++++ L++IN Sbjct: 1 MSE-VLSQSEIDDLLSAISTGDLNVEDAKQQDTQQKVKPYDFRRPAKFSKDQIRTLQMIN 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E FAR L LR +I + ++ Y EF R+L PT + + P+ G L+ Sbjct: 60 ENFARLLSTYLSAYLRSYVEIELASVDQVTYDEFMRSLTNPTIMGIFSAPPMEGKSLMEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P++ F +D L GG G E T E+ V ++ L+ +AWK + LE E Sbjct: 120 NPNIAFAVIDRLMGGPGETFESTG--ELTEIEEAVARKIFNRMLDSMLEAWKNVGELEPE 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL-- 236 + R E +FT I SPN+IV F V++G G FN+CLP+ +EP+ + L Sbjct: 178 FERIENNPQFTQI-ISPNEIVAVVAFSVKVGEAEGLFNVCLPYIFLEPVIDRLSARFWFA 236 Query: 237 -ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRII 293 + + + L ++ +Q+ + A A + + + L L GDV+ + KP I Sbjct: 237 TGHQKKITEEESQALKNRLHKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEID 296 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 V + G++ + A++I ++ +SL E Sbjct: 297 LIVGKKTKFKGKPGSIKNKLAVQITQIVREGDDSLGE 333 >UniRef50_A3EQZ9 Flagellar motor switch protein FliM n=2 Tax=Leptospirillum sp. Group II RepID=A3EQZ9_9BACT Length = 338 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 107/335 (31%), Positives = 187/335 (55%), Gaps = 4/335 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESD-IRPYDPNTQRRVVRERLQALEIINE 59 M +SILSQ E++ALL G SE + E A + + ++ Y+ +Q RV+R R+ LEIINE Sbjct: 1 MSESILSQEEVNALLRGLSEGEIETQAKAADSGEPVKQYNLASQERVIRGRMPTLEIINE 60 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 RFAR F++ L LR++ + + I + + +F + +P+P+N+N++ L+ LR L++ Sbjct: 61 RFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLIID 120 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 +V++ VD++FGG GR K+EGR+F+ E R+ ++ LA+ + AW ++P+ + Y Sbjct: 121 ARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPVHPMPITY 180 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +RSE+ +F I +P ++VV + +EI IC+P+S IEP++E L + Sbjct: 181 IRSEINPQFAAIV-APTEMVVTMAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSDQ 239 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 D W + L +V+ + LE+ A + L IL GDV +++ + + V+ Sbjct: 240 YEVDSRWINRLQERVEEAPLEIEAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVE 299 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQ 332 G+ ++ G A+RIE + P E++ Sbjct: 300 GIVRFLARPGIFRHHRAIRIERRVPPPTRYEEEDE 334 >UniRef50_B5YIZ4 Flagellar motor switch protein FliM n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIZ4_THEYD Length = 322 Score = 293 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 114/319 (35%), Positives = 191/319 (59%), Gaps = 4/319 (1%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D ILSQ EIDALL G S + E + S +RPYD +Q ++VR ++ +L+IINER A Sbjct: 4 DEILSQDEIDALLKGISGGEVETE-TAEAPSGVRPYDFTSQEKIVRGKMPSLDIINERLA 62 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R FR+ L + +R+ D+ + I +++F R++P P++LN+I L+PLRG LVVF + Sbjct: 63 RSFRVSLASDIRKIVDVINVNVNITKFYDFLRSVPFPSSLNIIKLEPLRGFSLVVFDAPM 122 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 +F ++ FGG G+ K EGREFT EQR+I++++ + LE +AWK I ++ ++R+ Sbjct: 123 IFTLIEFYFGGSGKGYYKPEGREFTPIEQRIIHKVVMMFLESMEEAWKPIFQIKPHFIRT 182 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242 EM +F I T P D+V+ T F +EI + +C+P+S +EP++E L + L + Sbjct: 183 EMNPQFVTIVT-PVDVVIETEFTLEIETRECKIMVCIPYSSVEPIKEKLYSAFLADRDEM 241 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVP 300 D W L Q++++ +++ A +++ +L L GD++ +++ + + V+GVP Sbjct: 242 DMKWIGRLKAQIKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVP 301 Query: 301 VLTSQYGTLNGQYALRIEH 319 + GT G YA++I Sbjct: 302 KFKGKLGTFKGNYAIKIIK 320 >UniRef50_Q0K3R1 Flagellar motor switch protein n=57 Tax=Proteobacteria RepID=Q0K3R1_RALEH Length = 339 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 178/336 (52%), Positives = 240/336 (71%), Gaps = 7/336 (2%) Query: 1 MG-DSILSQAEIDALLNGDSEVKDEPTASVS--GESDIRPYDPNTQRRVVRERLQALEII 57 M D LSQ E+D LL G S D P AS E +RPY+ TQ R++R RL LEII Sbjct: 1 MAYDKFLSQDEVDELLKGVSGEADTPKASEPALDEGGVRPYNLATQERIIRGRLHTLEII 60 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 NERFAR R LFN +RR DITVG+IRI+ + +FARNLP+PTNLNL+HLKPLRGT L V Sbjct: 61 NERFARSMRTALFNFIRRGADITVGSIRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFV 120 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 + P+LVF+ VDNLFGGDGRF T+VEGR+FT TEQR+I RML+L L Y +AW+ ++P+E Sbjct: 121 YDPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVHPIET 180 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 EY+RSEM KF N+ T N+ VV T FH+E+G + G+ ++CLP++MIEPL++LL+NP Sbjct: 181 EYIRSEMHPKFANVATH-NEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQ- 238 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVD 297 + + D+ W L Q++ +++ELVA FA + ++++L + GDVLPIE P+++ VD Sbjct: 239 DEKEVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEKVFGKVD 298 Query: 298 GVPVLTSQYGTLNGQYALRIEHLIN--PILNSLNEE 331 GVPV+ +GT+NGQYALR+E +IN + L+ E Sbjct: 299 GVPVMQCGFGTMNGQYALRVERMINHQDGDSHLDTE 334 >UniRef50_D2T5W7 Flagellar motor switch protein FliM n=2 Tax=Erwinia pyrifoliae RepID=D2T5W7_ERWPY Length = 334 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 215/332 (64%), Positives = 261/332 (78%), Gaps = 1/332 (0%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D+ LSQAEID LLN D S S + +PYDP+TQRRV+RERL +LEIINE Sbjct: 3 MSDNFLSQAEIDHLLNADGGDDRQVEEQSGSVTREAQPYDPHTQRRVIRERLHSLEIINE 62 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 RFAR FRMGLFNLLRRSPDIT G I+IQPYHEFARNLPVPTNLNL+HL PLRGT L+ FS Sbjct: 63 RFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFS 122 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P +VF+AVDNLFGGDGRFPTK +GREFT TEQRVI+RML +A E Y AW I ++ EY Sbjct: 123 PGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEY 182 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +RSE+QVKFTNIT+SPND+VV TPF +EIG+ GEFNIC+PFS IEPLRELL NPP+ENS Sbjct: 183 IRSEIQVKFTNITSSPNDVVVTTPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENS 242 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGV 299 ED WR LV Q++ ++LELVA F D+ RL+ ++K GDV+P++KP+ I A V GV Sbjct: 243 GQEDTQWRGLLVSQMRETELELVATFPDVPTRLTNVMKFKKGDVIPLDKPELIAASVGGV 302 Query: 300 PVLTSQYGTLNGQYALRIEHLINPILNSLNEE 331 PV T++YG++N Q+AL++E +I L+SLN+E Sbjct: 303 PVFTAKYGSVNNQFALKVEQMIPSALHSLNKE 334 >UniRef50_Q2LT03 Flagellar motor switch protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT03_SYNAS Length = 333 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 106/328 (32%), Positives = 172/328 (52%), Gaps = 5/328 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSG-ESDIRPYDPNTQRRVVRERLQALEIINE 59 M IL+Q E+DALL G + + + SDI YD +Q R++R R+ LE+ NE Sbjct: 1 MS-QILTQEEVDALLRGITGGQIDTEIDEEEEPSDIVIYDLASQDRIIRGRMPTLEMTNE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 +FAR FR L ++LR+ + ++ + + EF + LPVPT+L++ ++PLRG + V Sbjct: 60 KFARMFRTTLSSMLRKVVAVNSMSVDMIKFGEFLKTLPVPTSLHIFRMEPLRGNAIFVME 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 ++F VD LFGG G+ KVEGREFT E +I +++ AL AWK ++ + V Y Sbjct: 120 SKVIFTLVDVLFGGAGKELFKVEGREFTAIETNLIKKVILSALSDLEKAWKTMHDIRVIY 179 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 RSE+ +F I P D+V F +E+ +TG +C+P+S +EP+RE L Sbjct: 180 QRSEINPQFAQIVP-PTDLVFVVDFEIEVEYITGILKLCIPYSTVEPIREKLQAGFQSEQ 238 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 D+ W + + L+++ + ++ L PGDV+ +++ D + V+ Sbjct: 239 LEVDKVWMKRFRDNLMLAHLDILIELGSTLISAKDVVNLKPGDVITLDQYCTDPVNIFVE 298 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINPIL 325 G+ GT G A+RI ++ Sbjct: 299 GMMKFKGYPGTYKGNQAVRISEIVQDKE 326 >UniRef50_C6HWH3 Flagellar motor switch protein FliM n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWH3_9BACT Length = 341 Score = 286 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 188/340 (55%), Gaps = 9/340 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVKDE---PTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 M ++ILSQ E++ALL G E E P + R Y+ +Q RV+R R+ LEI+ Sbjct: 1 MAENILSQDEVNALLRGIVEGDVETSKPEVTEEAGKKTREYNLASQERVIRGRMPTLEIV 60 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 NERFAR F++ L + LR++ + + + + + EF + +P+P+N+N++ L+P++ L++ Sbjct: 61 NERFARFFQITLSSTLRKAVEFSPVSTEMIKFGEFIKKIPLPSNINILRLEPMKRNFLLI 120 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 +V++ VD+LFGG GR KVEGR+F+ E R+ +L A+ + AW ++ + V Sbjct: 121 IDARMVYLLVDHLFGGVGRGHVKVEGRDFSPIENRITRNILNQAIGDFEKAWAPVHHIGV 180 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 Y+RSE+ +F+ I SP ++V+ + ++I IC+P+S IEP++E L Sbjct: 181 SYIRSEINPQFSAIV-SPTEMVIALTYRLDIDGQGRPVYICIPYSTIEPIKEKLYTGFQS 239 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 + D W L +Q+ +++VA RLS++L PGD++ +++ D I Sbjct: 240 DQYEVDHRWILRLRQQIDSVPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKIT 299 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILNSL---NEEQ 332 V+ ++ G A+RIE + P L + +EE+ Sbjct: 300 VEKALRFKARPGVYRSSRAVRIEERVFPDLTDVKRGDEEE 339 >UniRef50_B0THB4 Flagellar motor switch protein flim n=5 Tax=Clostridiales RepID=B0THB4_HELMI Length = 331 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 159/335 (47%), Gaps = 9/335 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSG-ESDIRPYDPNTQRRVVRERLQALEIINE 59 M D ILSQAEIDALL + + P S IR YD + ++++ L++I E Sbjct: 1 MSD-ILSQAEIDALLAALASGQVTPEDVKDDLTSKIRVYDFKRPNKFSKDQIHTLQVIYE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 + R L LR I+V ++ Y EF R++P PT +N+ + PL G G++ Sbjct: 60 NYCRSLTTYLAANLRTLVQISVQSLDQLTYEEFIRSIPNPTIVNIFTMSPLNGNGIMEIH 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P++ F +D LFGG G P K+ R T EQ V R + L+ +++AW I ++ Sbjct: 120 PNIAFAVIDRLFGGTGNPPDKI--RGLTEIEQSVFQRTTRRMLDSFTEAWDNIAQVKARL 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E +F I +P ++VV +IG++ G NICLP+ ++EP+ L ++ Sbjct: 178 EMIETNPQFIQIV-APTEMVVVITLACKIGDVEGMINICLPYILLEPIISKLSAHFWFSN 236 Query: 240 RNEDQNWR--DNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAH 295 +++ + L +++ + + + +L +S++L L GDV+ ++ + Sbjct: 237 AAKERTTEQLEALRNRLERALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELEVL 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 + ++ G + ++I + + +E Sbjct: 297 IGQRVKYLARPGLSGSKLGIQITATYEKGVETDDE 331 >UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clostridia RepID=B0K1R9_THEPX Length = 332 Score = 283 bits (724), Expect = 6e-75, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 150/333 (45%), Gaps = 11/333 (3%) Query: 1 MGDSILSQAEIDALLNGDSEV----KDEPTASVSGESDIRPYDPNTQRRVVRERLQALEI 56 M + ILSQ+EID LL S ++ + IR YD + +E+L+ L++ Sbjct: 1 MAE-ILSQSEIDELLKAFSSGGLDVQEIEEVEETKSKKIRNYDFRRPNKFSKEQLRTLQM 59 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 I E +R L LR ++TV ++ Y+EF+ +L P + +I PL G L+ Sbjct: 60 IFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIIDAAPLEGLFLL 119 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 F+ + + +D + GG G+ ++ R++T E ++ +++K L + + W I + Sbjct: 120 EFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQMLSLFKEPWSNILDIN 177 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 +R E +F I SPN+ V ++I G N C+P +EP+ L Sbjct: 178 PSLIRVETNSQFAQI-ISPNETVALCTLSIKINETEGIMNFCMPHLTLEPIVPKLTTKFW 236 Query: 237 ENSRNEDQNWRDNL-VRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRII 293 +S +++ L ++ + + L A ++ + + L GD++ ++K + + Sbjct: 237 FSSMKKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVD 296 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 +D G N +Y++RI +I Sbjct: 297 IIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329 >UniRef50_Q6MI46 Flagellar motor switch protein FliM n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI46_BDEBA Length = 333 Score = 279 bits (714), Expect = 9e-74, Method: Composition-based stats. Identities = 98/332 (29%), Positives = 172/332 (51%), Gaps = 13/332 (3%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVS---------GESDIRPYDPNTQRRVVRERLQA 53 + +LSQ+E+DALL S+ + E I YD +Q R++R RL Sbjct: 2 NQVLSQSEVDALLAAVSDGDVGSPEASKPETQNVGKVDERKIVSYDLTSQDRIIRGRLPQ 61 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 LE+I E+F R FR+ L + LR+ IT+ + + EF LP+PT ++++ LRG+ Sbjct: 62 LEVIYEKFMRAFRVSLSSALRKIASITLTSTEFLKFGEFINTLPMPTCMSVLRFGNLRGS 121 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 L V L + VD+ FGG R TK++G++FT E ++ +++ LA+ AW +I Sbjct: 122 ALFVIESKLAYALVDSFFGGADRPYTKIDGKDFTPIELSIVQKVVGLAINDMEMAWASIE 181 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN 233 + +VR+E+ +F I P D+V+ + F VE+ N TG +I +P++ IEP+++ L Sbjct: 182 KIGCSFVRTEVNPQFVGIVP-PTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQT 240 Query: 234 PPLENSRNEDQN-WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD-- 290 + D+ W + Q+ + +E+ N + ++L ++ L GDV+P+++ Sbjct: 241 GFQVETDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASG 300 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 V+GV YG +G A+++ + Sbjct: 301 EFDVAVEGVRKFKGYYGIHHGTVAVQVTRPVE 332 >UniRef50_C8WWF8 Flagellar motor switch protein FliM n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWF8_ALIAD Length = 331 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 154/323 (47%), Gaps = 10/323 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGES--DIRPYDPNTQRRVVRERLQALEIIN 58 M + +LSQ+EIDALL + +P A + +R YD R ++ L+ L ++ Sbjct: 1 MSE-VLSQSEIDALLYAIRTGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E F R L LR P I V ++ PY EF R++P T L + + PL G ++ Sbjct: 60 EHFCRLLTSQLSGQLRSVPQIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P +VF +D GGD P +V RE T E + R+ + ++AWK++ L+ + Sbjct: 120 NPQVVFAMLDKYMGGDSAGPYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQ 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +V E +F +TT PN+ V+ V +G TG N+C+P IEP+ L N + Sbjct: 178 FVSLESNPQFLQLTT-PNETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMD 236 Query: 239 S--RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 ++ + D L ++ +++ L + ++L L GD + + + D + Sbjct: 237 PAFQSGRRQVNDELRAKLLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALV 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRI 317 +VDG P G N YA++I Sbjct: 297 YVDGRPAFWGSVGKRNRVYAVKI 319 >UniRef50_B8FTQ9 Flagellar motor switch protein FliM n=3 Tax=Clostridiales RepID=B8FTQ9_DESHD Length = 331 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 164/333 (49%), Gaps = 10/333 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTA--SVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 MG+ +LSQ EIDALLN S+ + + + + +R YD + ++++ +L+ I Sbjct: 1 MGE-VLSQDEIDALLNALSDGQVDAEEIKTTKVQKKVRVYDFRRPNKFSKDQIHSLQNIY 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E + R L L + V +I Y EF R+LP PT L+L L PL GT L+ Sbjct: 60 ENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYTLNPLEGTLLMEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 SP+L F +D L GG G+ K R+ T E+ +I+ + + +AW + E E Sbjct: 120 SPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIGEAWSEVISNEPE 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 Y+ E +FT I +PN++++ V++G + G N+CLP+ ++EP+ + L L + Sbjct: 178 YIVLETNPQFTQIV-APNEMIILVTLEVQVGEMVGMVNMCLPYLVLEPVLDKLSTLFLFS 236 Query: 239 SRN--EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIA 294 ++ + + + R+++ +++++ + + +L+L PGDV+P+ + + Sbjct: 237 TQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPV 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 +V G A++I ++ + Sbjct: 297 YVGNFRKFKGIPGLHGEHLAVQITEIVEEGRDQ 329 >UniRef50_C1TKI5 Flagellar motor switch protein FliM n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKI5_9BACT Length = 334 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 87/330 (26%), Positives = 163/330 (49%), Gaps = 9/330 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVKD--EPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M +LSQ+EID+LL+ + + E + S E +++ YD + +++L+A+++I+ Sbjct: 1 MTPDVLSQSEIDSLLDVLTSGEVDFEEISQASAEKNVKGYDFRRPDKFSKDQLRAIQMIH 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E F+R L ++R V ++ Y EF R++ PT + ++ + PL G +V Sbjct: 61 ESFSRQLTTSLSTMVRSIVTCEVASVDQVAYEEFVRSMVQPTVMGVLEMYPLEGNAVVEM 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P+LVF +D L GG G K R+ T E VI R+ LE D+W + + Sbjct: 121 NPNLVFAIIDRLLGGKGEVFGK--PRDLTDIESTVIERVFMRMLELLEDSWSTVIDVRFR 178 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 + E F I D+V+ V IG++ G ++C+P+ ++EP+ + L + Sbjct: 179 FDSMESNPFFVQICPG-TDMVLLVTLRVSIGDVEGMVSLCIPYFVMEPVMDKLSSQIWFA 237 Query: 239 S--RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIA 294 S +N+DQ+ R L + ++ + D L L +++L GDV+ ++ D + Sbjct: 238 STGKNKDQDHRGFLTASLGTVKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRV 297 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 V T + GT++G+Y++ + + + Sbjct: 298 RVGSRIKFTGRPGTVDGRYSVEVLEVADDG 327 >UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ6_HALOH Length = 334 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 88/328 (26%), Positives = 156/328 (47%), Gaps = 10/328 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRP--YDPNTQRRVVRERLQALEIIN 58 M D +LSQ+EID+LL+ S + + + YD ++ +E+++ LE+I+ Sbjct: 1 MAD-VLSQSEIDSLLSALSSGDVDVEEIKKETEEEKVKVYDFRRPDKLSKEQMRTLEMIH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E FAR L LR D V +I Y EF R+LP PT + + ++P G + Sbjct: 60 ENFARILTTTLSTQLRSRVDFEVASIEQLTYEEFIRSLPEPTIIGISEMEPFNGQFIFEI 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P + F +D LFGG G +V R +T E+ V+ +++ L G +AW+ I ++ Sbjct: 120 NPDIGFAIIDRLFGGMGNPLDRV--RTYTDIEKVVLRKVISWFLSGLPEAWENIIRVKPR 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL-- 236 E +FT + S ND+ + +I N G N+C+P+ MIEP+ L Sbjct: 178 LREIESNPQFTQVVPS-NDMTILITMSAKIANSEGLVNVCIPYIMIEPIVPQLNAQQWFS 236 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 + + ++++ + LE++A L ++ +L L PGDV+ ++K +++ Sbjct: 237 NTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVDI 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + G N A++I +I+ Sbjct: 297 RIGKNVKFQGVAGVSNKHMAVKITDVIS 324 >UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6B3_THEAS Length = 335 Score = 274 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 80/330 (24%), Positives = 148/330 (44%), Gaps = 8/330 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVKDE-PTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M +LSQ EID+LL S + + I+ YD + +++L+A+++I++ Sbjct: 1 MVPEVLSQNEIDSLLQALSSGSVDLAAIESKDDRKIKVYDFRRPDKFSKDQLRAIQMIHD 60 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 FAR L L+R V ++ Y EF R+L PT + ++ + PL G ++ + Sbjct: 61 SFARQLTTSLSTLVRSMVSSEVVSVDQLAYDEFIRSLVQPTVIGVLEMYPLSGNAVLEMN 120 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P LVF +D + GG G K R+ T E+ V+ R++ LE ++W + + + Sbjct: 121 PHLVFAIIDRMLGGKGEPIRK--PRDLTDIERTVVERVMLKILEHLEESWSTVVDIRFRF 178 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E F I D+V+ V++G G N+C+P+ ++EP+ + L + S Sbjct: 179 ESMESNPFFVQICPG-TDMVLLVTLKVQVGEAEGIMNLCIPYFVMEPMIDKLSSQHWFAS 237 Query: 240 RNEDQNW--RDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 R+ + ++ + + L L +L+L GDV+ ++ D + Sbjct: 238 TGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLR 297 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPIL 325 V + G+ N YA R+ +++ Sbjct: 298 VGNRVKFLCEAGSFNKHYAARVLEVLSSEE 327 >UniRef50_Q51465 Flagellar motor switch protein fliM n=158 Tax=Proteobacteria RepID=FLIM_PSEAE Length = 323 Score = 273 bits (697), Expect = 9e-72, Method: Composition-based stats. Identities = 129/319 (40%), Positives = 189/319 (59%), Gaps = 3/319 (0%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 +LSQ EIDALL+G + E + ++ YD +Q R+VR R+ LE+INERFAR Sbjct: 5 DLLSQDEIDALLHGVDDGLVETEVEAT-PGSVKSYDLTSQDRIVRGRMPTLEMINERFAR 63 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLV 123 + R+ +FNLLRRS D+ VG +++ + E+ +L VPT+LNL+ +KPLRGT L + LV Sbjct: 64 YTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLV 123 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 F VDN FGGDGR K+EGREFT TE RV+ +L+ A +AW+A+ + EYV SE Sbjct: 124 FKLVDNFFGGDGRH-AKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMNFEYVNSE 182 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNED 243 + NI + +V + FH+E+ G+ +I +P+SMIEP+RE+L + ++D Sbjct: 183 VNPAMANIVSPSEVVV-VSTFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQD 241 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLT 303 + W L V Q+ L A L+L IL + PGDV+P+E P+ ++ +GVP Sbjct: 242 ERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPEHMVMRANGVPAFK 301 Query: 304 SQYGTLNGQYALRIEHLIN 322 + G G AL+I + Sbjct: 302 VKLGAHKGNLALQILEAVE 320 >UniRef50_A8F895 Flagellar motor switch protein FliM n=10 Tax=Thermotogaceae RepID=A8F895_THELT Length = 330 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 77/331 (23%), Positives = 146/331 (44%), Gaps = 10/331 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKD-EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D +LSQ EID LL S + ++ YD + +E ++ ++I+E Sbjct: 1 MSD-VLSQDEIDKLLQAISSGEVTVDEIKKEETKKVKLYDFRRPSKFSKEHIRVFDMIHE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 FAR L +R +I + +I Y EF R+LP P+ + + G+ ++ + Sbjct: 60 NFARSISTYLSGRVRTFTNINLASIDQISYEEFIRSLPAPSFITVFSAPEFVGSAILEMN 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 + + +D + GG G K R + E ++ + + L S AW + Sbjct: 120 LEIFYTILDLILGGPGIPNVK---RTPSDIELSIMRKEVMNILTNLSQAWSEVYQFVPTI 176 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E +F I PN++++ +V I G NIC P S+ EP + L + + Sbjct: 177 ESVENNPQFVQIAP-PNEMILLVSLYVTIAKTEGFLNICWPSSLTEPFMDKLSSRTWFTA 235 Query: 240 RNED--QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAH 295 + E + ++L + V+ ++++ A + L + +IL L GDV+ ++ K D ++ Sbjct: 236 KREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVKEILDLEVGDVIRLQTHKDDDVMVE 295 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V P ++ G G A+++ ++ P + Sbjct: 296 VQSKPKFMARPGVFKGHRAVKVTRILKPEVE 326 >UniRef50_C0GJF2 Flagellar motor switch protein FliM n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF2_9FIRM Length = 325 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 150/319 (47%), Gaps = 6/319 (1%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 +LSQ EID+L++ S + + ++ ++ YD + +++++ L+I++E FAR Sbjct: 3 DVLSQNEIDSLIHALSTGEIAEEEPQTSDTPVQVYDFRRPNKFSKDQMRTLQIVHENFAR 62 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLV 123 L LR +T+ ++ + EF +LP PT +++ G+ ++ +P V Sbjct: 63 ILSNFLTAYLRTPVQVTLASVSQVTFEEFIFSLPTPTLMSIFKASDNMGSAMLETNPQFV 122 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 F +D LFGG+G+ P ++ RE T E V+ R++ LE AW+ IN L + + Sbjct: 123 FPIIDLLFGGEGKTPKQI--RELTEIELTVMRRIVNKILENLRYAWEDINELSPQIENMD 180 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV-NPPLENSRNE 242 +F + S N+ V +I + G N+C PF +EP+ L NS+ Sbjct: 181 TNPQFNQMIAS-NETVALLTLSTKIRDSEGLINVCFPFITLEPVIANLTAQHWFSNSQIS 239 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVP 300 L ++ +EL A ++++ L+ GDV+ +++ + V+ P Sbjct: 240 GGVHSRMLETGLEDVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKP 299 Query: 301 VLTSQYGTLNGQYALRIEH 319 + Q G G+ A++ H Sbjct: 300 MFKIQAGVSKGRRAVQFLH 318 >UniRef50_C4Z5H1 Flagellar motor switch protein FliM n=7 Tax=Bacteria RepID=C4Z5H1_EUBE2 Length = 327 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 9/331 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MG+ +LSQ+EID LL S + D + E ++ YD + +E L+ LEII E Sbjct: 1 MGE-VLSQSEIDNLLKALSSGELDVDEMKNTEEKQVKNYDFARPSKFSKEHLRTLEIIFE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F R L LR+S + V + Y EF+ L P L ++ ++PL G ++ + Sbjct: 60 HFGRLLATNLPAYLRKSVSVDVVNSEVVIYSEFSNALSNPVLLGVVGMQPLSGNIIMEMA 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 +L F VD L GG G K R+F+ E ++ R+ + + + W+ + + Sbjct: 120 SNLGFAIVDRLLGGAGNSLDK--ERDFSEIELSILERIFTVCVNLMQEPWENVVKVNPRL 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL--E 237 R E +F I SP++ + +++IG++ G NICLPF+ +EP+ + L Sbjct: 178 ERIETNSQFAQI-ISPSETIAIVTINLKIGDVEGLVNICLPFATLEPVMDKLNTKYWFSN 236 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 + + D + + + + + A + +S L GD++ I+K + Sbjct: 237 MQEKDTNTYEDAIETVIDKAMIPVKAVLGTSKISVSDFANLQIGDIIRIDKKVDQELEVF 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V + + G +YA+R+ +I Sbjct: 297 VGNIKKFKALPGYYEDKYAVRVTEVIRKESE 327 >UniRef50_Q1NVK6 Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM n=2 Tax=Deltaproteobacteria RepID=Q1NVK6_9DELT Length = 330 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 99/331 (29%), Positives = 171/331 (51%), Gaps = 6/331 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGES--DIRPYDPNTQRRVVRERLQALEIIN 58 M + ILSQ E+DALL G S + PYD Q+R+V+ ++ A++ I+ Sbjct: 1 MAEQILSQDEVDALLKGISGGDIDEPEEAVDAESLGYTPYDFTRQQRIVQVKMPAMDAIS 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + F R R L LRR DIT + ++ + F R LPVP++L + + P RG L+V Sbjct: 61 DTFMRSVRTSLSAALRRILDITAAPMEMERFGAFVRTLPVPSSLQVFKMAPFRGHALIVL 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 P LVF V++ GG G +VEGR+FT EQR+I R++ L L AW ++ PL+V+ Sbjct: 121 EPKLVFTLVESFLGGSGARNVRVEGRDFTAIEQRLIRRVVNLLLTDLEKAWYSLQPLKVQ 180 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 YVRSE+ +F I P D+VV + V++ G C+P + +E ++ L+ Sbjct: 181 YVRSEINPQFAKIC-QPEDVVVINRYDVDMDRAAGSITTCIPLANLESVKSKLMTTFQRE 239 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 ED + +V ++++++++ + + I+ L GD + +E+ +++ +V Sbjct: 240 QSEEDIAIQRTIVDNIKNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYV 299 Query: 297 DGVPVLTSQYGTLNGQYALRIE-HLINPILN 326 G+ + G A+ I+ +++P + Sbjct: 300 AGMRKYMATPGVHRNNNAVLIKRKVLDPNRD 330 >UniRef50_P23453 Flagellar motor switch protein fliM n=32 Tax=Bacillales RepID=FLIM_BACSU Length = 332 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 90/325 (27%), Positives = 158/325 (48%), Gaps = 9/325 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRP--YDPNTQRRVVRERLQALEIIN 58 M +LSQ EIDALL+ S + + E + + YD R ++++++L I+ Sbjct: 1 MSGEVLSQNEIDALLSAISTGEMDAEELKKEEKEKKVKVYDFKRALRFSKDQIRSLTRIH 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + FAR LR I+V ++ PY EF R++P T LNL + P+ G ++ Sbjct: 61 DNFARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEV 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P++ + +D + GG G KV+ T E ++I+ + + AL Y +AW++I +E E Sbjct: 121 NPTIAYTMMDRVMGGIGISHNKVD--SLTEIETKIISNLFENALGNYKEAWQSIADIEPE 178 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 E+ +F + SPN+ VV + +IG ++G N+C+P ++EPL L Sbjct: 179 MTEFEVNPQFVQMV-SPNETVVVISLNTQIGEISGVINLCIPHIVLEPLIPKLSVHYWMQ 237 Query: 239 SR--NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIA 294 S +L +++ +Q+ +VA L + + L L GD + ++K D + Sbjct: 238 SDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTV 297 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEH 319 V P Q G +N + A++I Sbjct: 298 LVGDKPKFLGQAGRVNRKQAVQILD 322 >UniRef50_A5D0K2 Flagellar motor switch protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0K2_PELTS Length = 330 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 84/332 (25%), Positives = 145/332 (43%), Gaps = 10/332 (3%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDI--RPYDPNTQRRVVRERLQALEIINERF 61 +LSQ+EIDALL+ S + + + + + YD + +++L+ L++++ F Sbjct: 2 DVLSQSEIDALLSALSTGEVKIEELKETQQQVEYKRYDFRRPNKFSKDQLRTLQVLHGVF 61 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR L LR + I V ++ Y +F R++P PT L + L PL+GT + Sbjct: 62 ARLLSNFLTGYLRSNVQIEVASVDQLTYEDFIRSIPTPTVLAIFSLNPLKGTAIAQLDSM 121 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 +F +D FGG+G P V RE T E V+ ++ LE + AWK I +E Sbjct: 122 FLFPIIDLFFGGNGEAPKAV--RELTDIELSVVRKISMKILEHLALAWKDIVHVEPVIET 179 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELL--VNPPLEN 238 E I S ++IV ++G G N+CLPF +++P+ L Sbjct: 180 VETNPYLHQI-FSFSEIVALITLTTQVGESARGFINLCLPFPLLDPVVSQLSFQRRFGPQ 238 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 + + L + ++EL + + L+L GDVL ++K + ++ Sbjct: 239 TSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGDVLILDKKVDQDLDLYI 298 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 Q G L + A++I L ++ Sbjct: 299 GEHLKFKVQAGALGSKLAVQITALATEGEKNV 330 >UniRef50_A6M1D3 Flagellar motor switch protein FliM n=26 Tax=Clostridium RepID=A6M1D3_CLOB8 Length = 332 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 78/332 (23%), Positives = 147/332 (44%), Gaps = 10/332 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVK--DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D +LSQ EIDALL+ S + E + ++ YD + ++ +E ++ LE+I+ Sbjct: 1 MAD-VLSQNEIDALLSALSTGELGSEDVGKDEEKHKVKLYDFRSPQKFSKEHIRTLELIH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + +AR L R++ + + + Y EF ++ PT + + + PL GT + Sbjct: 60 DNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITIFKMAPLSGTIIFET 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P +D L GG G + +EFT ++ ++ ++ + AW ++ +E E Sbjct: 120 NPQFSLQVIDVLLGGKGDRKAQ--AKEFTDIDKNIMRQVTTGMISNLKLAWDSVLEVEPE 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL-- 236 E T SPND V F VE+ + N+CLP+ +E + + LV Sbjct: 178 VETIETNPAINQ-TLSPNDPVALITFSVEMNKRSTFINMCLPYLSVEKILDKLVVQYAFK 236 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIA 294 ++ R+ L + + +E+VA ++ + LKL GDV+ ++ I Sbjct: 237 NDNEASMAESREKLEKGINKVDVEIVAELGTANITVDDFLKLTVGDVIKLDNKSSSPIKV 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 +V ++ G + + I + + +N Sbjct: 297 YVGNEECYYAKPGVVGKNAGVMILDITDKEVN 328 >UniRef50_A9KNE7 Flagellar motor switch protein FliM n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KNE7_CLOPH Length = 325 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 85/329 (25%), Positives = 159/329 (48%), Gaps = 9/329 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MGD +LSQ+EID LL S + D SGE ++ YD + + +E L+ L+II E Sbjct: 1 MGD-VLSQSEIDNLLAALSSGELDADEFRDSGEKAVKNYDFHRPSKFSKEHLRTLDIIFE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 + R L LR++ + V Y EF L P L +I PL G ++ + Sbjct: 60 HYGRLLSTHLPAYLRKNVQVEVINSEAVVYQEFTNALSNPVLLGIIDFAPLEGNIIIELA 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 ++ + VD + GG G K R+F+ E +I R+ + ++ W + L Sbjct: 120 ENVGYAIVDRMLGGSGNPLEKS--RDFSEIELVIIERIFTVMTNILAEPWANVVKLNPRL 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +R E +F I SP+D+ +++IGN+ G N+CLP++ +E + + L ++ Sbjct: 178 IRIETNSQFAQI-ISPSDMASIVTLNIKIGNIEGMMNVCLPYACLEVIIDKLNTKYWYST 236 Query: 240 RNE--DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 E D N+++ + + +++ + A S+ L++++ + GD++ +++ D + + Sbjct: 237 MQEKGDSNYQEFIETAISRARIPVKAVLGKSSISLNELINMQKGDIIKLDRKIDDELSVY 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPI 324 V + T+ G + YA++I +I Sbjct: 297 VGNIKKFTALPGASSDSYAVKISTIIREE 325 >UniRef50_C0QAJ4 FliM n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAJ4_DESAH Length = 326 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 114/325 (35%), Positives = 172/325 (52%), Gaps = 6/325 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVS--GESDIRPYDPNTQRRVVRERLQALEIIN 58 M D ILSQ E+D+LL G + E V I YD +Q +VVR R+ ++IN Sbjct: 1 MSD-ILSQDEVDSLLAGLDSGEVESETEVELSDPEGIVTYDFTSQDKVVRARMPTFDVIN 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 ER +R R L LL+ + D+T + + EF R+LPVPT+L++ ++PLRG GLVV Sbjct: 60 ERLSREIRTSLSGLLQTNVDVTANPLDTLKFTEFVRSLPVPTSLHVFRMEPLRGHGLVVL 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 LV+ +D FGG+G +VEGREFT E+ +I +++ L+ AW I P++ Sbjct: 120 ESQLVYNLIDTFFGGEGLGKARVEGREFTAIEEVMIKKVVVACLKDIEKAWLPIEPVKTS 179 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +RSEM +F I P D+V+ T F +E+ G +CLP++MIEPLR L + Sbjct: 180 LIRSEMNPQFAAIVL-PTDLVIVTRFEIELEQAAGNLVLCLPYAMIEPLRAKLASGFQAE 238 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHV 296 + D WR L + S + L + +++ L PGDV+ + + D + +V Sbjct: 239 TEEIDVAWRKRLQEIILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTGYV 298 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLI 321 DG+P + G G A R+E + Sbjct: 299 DGLPKVRGFAGVQRGFQAFRVEKKL 323 >UniRef50_D2R066 Flagellar motor switch protein FliM n=4 Tax=Planctomycetaceae RepID=D2R066_9PLAN Length = 362 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 162/339 (47%), Gaps = 20/339 (5%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASV--------------SGESDIRPYDPNTQRRV 46 M D +LSQAE+++LL+ +++ + PYD RV Sbjct: 1 MADEVLSQAEVESLLSAMEASGPRTSSAAISTASVAPPSKGAIRTREKVTPYDFKRPERV 60 Query: 47 VRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIH 106 +E+++AL+ ++E F R+F L LLR ++ + ++ Y EF +L PT NL+ Sbjct: 61 GKEQMRALQSLHEGFGRNFGAALSALLRSIVEVKLTSVDQLTYSEFVFSLENPTCFNLLR 120 Query: 107 LKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYS 166 +PL G ++ +PS+++ +D L GG G+ V R T E R+++R+ L L+ Sbjct: 121 AEPLEGNLILDINPSILYPIIDRLLGG-GKEAGPVARRPLTEIELRLVSRITHLFLQELK 179 Query: 167 DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEP 226 AW+ + PL++ R E + I PN++VV F + + ++ G N+C+PF+ IE Sbjct: 180 HAWEGVLPLKLSVDRVESNPQLVQIVP-PNEVVVLISFELTLNDVRGMINLCIPFNSIER 238 Query: 227 LRELLVNPPL--ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 + L + + +++ S++ELV A+ ++ ++ L GD++ Sbjct: 239 IGSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKVELVVTLAETTITTGDMIGLRVGDII 298 Query: 285 PIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 +K + V G+ + G L G A+RIE I Sbjct: 299 TTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRIEQSI 337 >UniRef50_Q3ADB8 Flagellar motor switch protein FliM n=6 Tax=Clostridia RepID=Q3ADB8_CARHZ Length = 335 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 148/329 (44%), Gaps = 8/329 (2%) Query: 2 GDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 ILSQ EID LL + DE T E R YD + +E L+ L +I++ Sbjct: 7 SKEILSQEEIDRLLAALASGNIDEVTEKKKEEIRYRKYDFRRPNKFSKENLRTLHLIHDN 66 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 +AR L LR + + V ++ Y +F ++P PT + L PL+G+ ++ + Sbjct: 67 YARLISNFLTGYLRTNISVKVASVDQATYEDFLVSVPTPTLITTFKLHPLKGSMVMETNL 126 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 +F + LFGG G P +V RE T E VI ++ LE + AW I +E E Sbjct: 127 QFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLAQAWAEIIKVEPEIE 184 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL--EN 238 E + + SPN+IV F EI G N+CLPF +++PL L Sbjct: 185 ALENNPRLHQVL-SPNEIVAIITFTTEILGNNGLINLCLPFEVLDPLLAKLSASYWFSHA 243 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 + + + + ++ + S+LE+ A LR+ + LK+ GD++ + + + + V Sbjct: 244 TAADREAFARHMEGFLAESELEVSAILGGTELRVREFLKIEVGDIVVLNRKVDEELELFV 303 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLINPIL 325 + + Q G + + +I +I Sbjct: 304 EDQKLFKVQPGRVGEKLCCQITGMIERDE 332 >UniRef50_B8FK38 Flagellar motor switch protein FliM n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FK38_DESAA Length = 325 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 5/325 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESD-IRPYDPNTQRRVVRERLQALEIINE 59 MGD ILSQ E+D+LL G S + E D + YD Q RV+R R+ LE++N+ Sbjct: 1 MGD-ILSQDEVDSLLQGISSGEIETEPEEEVSEDGVALYDFANQDRVIRGRMPTLEVVNK 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R AR F L +R + DI+V + + EF ++PVP N+++ ++PLRG L+V Sbjct: 60 RLARMFSSSLSATMRGAADISVRDTNMIKFSEFQSSIPVPANIHMFKMEPLRGHALLVVD 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LVF ++ FGG KVEGR+FT E ++I +++ + L+ + DAW I P++ Y Sbjct: 120 TPLVFQLIEYYFGGTPGGALKVEGRDFTRIENQIIRKVVGIFLKDFDDAWAPIFPIKPVY 179 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 VRSEM +F I P D+++ F VE+ G + +P+SM+EP+R+ L + ++ Sbjct: 180 VRSEMNPQFAVIGL-PIDLMIIVRFQVELETTEGGMTLAIPYSMLEPIRDKLYSGFQSDN 238 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 D +WR + QVQ +E+ + +++ L GDV+ +++ + + A + Sbjct: 239 LEADASWRKRVESQVQEVLVEICVELGTAVITAERLMSLRKGDVISLDQFADEPLTAKIQ 298 Query: 298 GVPVLTSQYGTLNGQYALRIEHLIN 322 GVP + + G + G A+ +E I Sbjct: 299 GVPKIAGKAGVVKGSKAIAVEGRIT 323 >UniRef50_B8I3P2 Flagellar motor switch protein FliM n=2 Tax=Clostridium RepID=B8I3P2_CLOCE Length = 328 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 10/332 (3%) Query: 1 MGDSILSQAEIDALLNGD--SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 MGD ILSQ EID LL ++ + S E ++ +D + + + L+ IN Sbjct: 1 MGD-ILSQNEIDELLKALTTGDIDVQQIQSTKTEKKVKIHDFKKPPKFANDHKRTLQFIN 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E +AR + L LR + V ++ Y EF+ +L P L ++ PL G+ + Sbjct: 60 ENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPVILGIVDFTPLNGSVIFEM 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 PS+ + +D + GG G +V R FT E +I R++ L + W++I ++ Sbjct: 120 DPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWESIIAIKPR 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 + E +F I PN++V +V +G + G NIC+P +EP+ L Sbjct: 178 LEKIETNAQFAQI-IHPNEMVALITLNVVVGEVKGLINICIPHITVEPIMPKLSTKLWFT 236 Query: 239 SRNED--QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIA 294 + + ++ + ++ ++ H+ + + A S+ +S+ L L GDVLP++ + Sbjct: 237 NVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLDTNVNGDLEI 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V +P ++ G + A++I ++ + Sbjct: 297 LVGDLPKFKAKPGVKKNKVAIKITEVLRREED 328 >UniRef50_Q57511 Flagellar motor switch protein fliM n=33 Tax=Spirochaetales RepID=FLIM_BORBU Length = 352 Score = 260 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 86/336 (25%), Positives = 156/336 (46%), Gaps = 16/336 (4%) Query: 6 LSQAEIDALLNGDSEVKDEP---------TASVSGESDIRPYDPNTQRRVVRERLQALEI 56 LSQ +ID+LL + + ++ + ++ YD + +E+++ + Sbjct: 8 LSQDDIDSLLESINSSESLSLDESLSNVISSPTGKKQKVKVYDFKRPDKFSKEQVRTVSS 67 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 +E FAR+ L LLR+ + V ++ Y EF R++P PT L +I++ PL+G+ + Sbjct: 68 FHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLKGSAIF 127 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 P++ F VD LFGGDG K + R+ T EQ V+ ++ L +AW + L Sbjct: 128 EVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQVVDLR 186 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + E+ +F I P ++++ V+IG + G N CLP+ IEP+ L Sbjct: 187 PRFGHIEVNPQFAQIVP-PTEMIILVTLEVKIGKVEGLMNFCLPYITIEPIVSKLSTRYW 245 Query: 237 EN--SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP---DR 291 + D L +++++ + LVA ++ L++ +IL L+ GDVL +E Sbjct: 246 HSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDVLNLESSLINKD 305 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 + V + G + + +++I I I Sbjct: 306 LTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGF 341 >UniRef50_C6BTE8 Flagellar motor switch protein FliM n=13 Tax=Desulfovibrionales RepID=C6BTE8_DESAD Length = 326 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 169/326 (51%), Gaps = 6/326 (1%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTAS-VSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M IL Q E+DALL G S + E +S + +D Q R++R R+ LEI+N+ Sbjct: 1 MS-KILQQDEVDALLRGLSGGEVEAEQDIPDDDSGVVSFDLANQDRIIRGRMPVLEIVND 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 RFAR L N +R+ DI +I + + +F R+LPVPT+L++ + PLRG ++V Sbjct: 60 RFARLATNNLANTMRKRVDINPISIDMSKFGDFMRSLPVPTSLSIFKMDPLRGNAILVVD 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LVF V++ FGG G P KVEGR+FT EQ +++R++K+AL D+W+ ++ + +E Sbjct: 120 SRLVFALVESFFGGSGSQP-KVEGRDFTPIEQAIVDRVVKIALSNLEDSWRPVHEVHLEL 178 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 VRSE+ +F I P+D+VV F VE+ N G +CLP+S +EP+R L Sbjct: 179 VRSEVNPQFAAIVP-PSDVVVVITFEVELENAIGSLIVCLPYSTLEPIRSKLHASFQSER 237 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQ--ILKLNPGDVLPIEKPDRIIAHVD 297 D W ++ + ++L+ + Q L+ +L ++ D + V Sbjct: 238 LEIDHVWVSRFKERLLETPVDLLVRLGKTKITGRQLLNLEEGDLLLLDTDEEDMLECEVG 297 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINP 323 GV G + A +I I P Sbjct: 298 GVLKYLGSPGRVKANRAFQIAQAIEP 323 >UniRef50_Q31FP9 Flagellar motor switch protein FliM n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FP9_THICR Length = 339 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 176/320 (55%), Gaps = 2/320 (0%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGES-DIRPYDPNTQRRVVRERLQALEIINERF 61 D ILSQ E+DALL G + E + YD Q R+VR RL AL+IINERF Sbjct: 2 DDILSQDEVDALLKGMGGGDVDTEGDNPAEGTSAKVYDFTNQERIVRGRLPALDIINERF 61 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR F+ ++ S ++T G ++I ++ RNL VPT+LN+ + PL G L Sbjct: 62 ARGFQRHFNEMIMSSVEVTAGEVKIIKMIDYLRNLFVPTSLNIYRINPLNGVSLFTLDSK 121 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L+F AVD FGG G P K+EGRE+T E ++ +L ++ + AW + +E++Y+ Sbjct: 122 LIFTAVDMYFGGTGLLPFKIEGREYTPVEMSMVRSILDMSSDNLRKAWAPVMDIEIDYMH 181 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 SEM KF +I + D++V +P +V + G +I +P++M+EP+R+ L Sbjct: 182 SEMNPKFASIVDA-TDMIVVSPINVRFEGVEGRVDIVMPYAMLEPVRDKLEEGMSNLQGE 240 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPV 301 D W L + ++ ++EL N ++ + + ++K+ GD++PIE P+ + +G+ V Sbjct: 241 SDNRWSRTLKEETKNIEIELAVNLLELQMSMDDLMKMEKGDIIPIEMPELVTVKAEGIGV 300 Query: 302 LTSQYGTLNGQYALRIEHLI 321 L + G + A++IE ++ Sbjct: 301 LKGKVGESRDRKAVKIEQIL 320 >UniRef50_C1SNF9 Flagellar motor switch protein FliM n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNF9_9BACT Length = 336 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 92/335 (27%), Positives = 159/335 (47%), Gaps = 13/335 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSG----ESDIRPYDPNTQRRVVRERLQALEI 56 M D ILSQ EIDALL+ S ++ V I YD RV +E+L+++ Sbjct: 1 MAD-ILSQEEIDALLSTVSTDEEIADEKVEQLDFVPKKISVYDFRRPDRVSKEQLRSIRN 59 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 ++++FAR+F L N LR DIT+ ++ Y EF +LP PT+ N+I + P+ G ++ Sbjct: 60 LHDKFARNFSSTLSNYLRTITDITLTSVDQMTYGEFLMSLPDPTSFNIISMIPMEGNAVL 119 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP-L 175 +PSLVF VD L GG G+ + RE T EQ +++ +L L L+ + W+ I P + Sbjct: 120 EINPSLVFPIVDKLLGGTGKPLFQT--RELTSLEQHIMDGILGLILKDLEEVWRQIIPNI 177 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 ++ SE I S N++V+ V+ G + G N+C+P ++EP+ + + Sbjct: 178 RLKKELSENSPHIIQIV-SQNEVVILVVCEVKFGEVLGMMNLCIPAIVLEPVLGKISSSD 236 Query: 236 L--ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDR 291 + D ++ + +++ L + +L L GD++ + Sbjct: 237 WLIGAKKGLQGEKEDEIMHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRP 296 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + H + + GTL + A++I I + Sbjct: 297 VEIHFNNKQKFLGEVGTLGVKKAVKITQFITESDD 331 >UniRef50_A6TKX0 Flagellar motor switch protein FliM n=4 Tax=Clostridia RepID=A6TKX0_ALKMQ Length = 331 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 157/332 (47%), Gaps = 10/332 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDE--PTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D +LSQ EID L + + E E I+ YD + +++ +++L+ L+II+ Sbjct: 1 MSD-VLSQNEIDDLFQALNSGEVEIDEMKDEKIEKKIKSYDFKSPKKLAKDQLRTLQIIH 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + F+ L LR V + Y+EF+ ++ P L++I+ PL G +V Sbjct: 60 DNFSGMLNTFLAGYLRTYVQAEVLTVEELSYYEFSNSVVNPAVLSIINFTPLEGQIIVDI 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 SPS+ F ++ + GG G+ ++ R FT E +I +++ + D W+ + L+ + Sbjct: 120 SPSISFTLIERILGGMGKETEEI--RPFTEIETTLIKNLMRQVINLMIDPWENVIELQPK 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 + E +F I SPND V +++IG++ G NIC+P +IEP+ + L + Sbjct: 178 LDKIETNSQFAQIV-SPNDTVALITLNLKIGDVEGMMNICIPHIVIEPILDKLSTKLWFS 236 Query: 239 SRNEDQNWRDN--LVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 + ++ RD L ++V+ S +++ A + + L+L GDV+ ++ P + Sbjct: 237 NSSKPVTERDKKALQKRVEKSAVDITAQLGSTCVTVKDFLELQMGDVIMLDNPVDKELQI 296 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V GT + A+++ + Sbjct: 297 LVGDKIRYRGLPGTSKNKLAVKVTGIDQKGDE 328 >UniRef50_A9BEY4 Flagellar motor switch protein FliM n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEY4_PETMO Length = 359 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 8/322 (2%) Query: 3 DSILSQAEIDALLNGDSEVKD---EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 D L+Q EID++L S + E I+ YD + RE+L+ L++I+E Sbjct: 4 DETLTQEEIDSILKSMSSGESPEEVLEEYQEEERRIKDYDFRRPMKFSREQLRTLQLIHE 63 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 FAR L R D+ +I + EF ++L PT + + + G+ ++ Sbjct: 64 SFARELSTYLSGRSRTFVDVKYASIDQITFSEFQKSLNSPTFIVIFSSEAFSGSAILQMG 123 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 L ++ +D L GG G ++ R T E ++ + + L S +W I + Sbjct: 124 LDLGYVIIDRLLGGPGNTLEEI--RPPTEIEMNILRKESAVMLRMLSKSWSNIEEFDANL 181 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E +F + PN++ + V I N+ G N+C P S +EPL + L S Sbjct: 182 ENLETNPQFVQVAP-PNEMTILITLSVTIKNVQGFVNLCFPSSSLEPLNDKLTTRMWTTS 240 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 + +++NL + + S+L L A + L+ L L GDV+ ++ + I ++ Sbjct: 241 YRHTEEFKENLRQSLLLSKLNLSAILGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDLEIE 300 Query: 298 GVPVLTSQYGTLNGQYALRIEH 319 P+ G G Y+++I Sbjct: 301 ERPIFKVNVGKSKGFYSVKIVE 322 >UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67K08_SYMTH Length = 308 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 19/323 (5%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 ++ LSQAEIDAL+ +IR YD + ++ ++ L +++E A Sbjct: 2 ENPLSQAEIDALVMSTGT-------------NIRTYDFRRPSKFNKDLIRTLVLVHENLA 48 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R + L LR ITV + + EF + LP PT L PL G L+ S ++ Sbjct: 49 RLLQSYLSAGLRTWVQITVRSTNQYTFSEFTQLLPNPTIALSFRLNPLPGMCLLEISHNI 108 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 F V+ +FGG G RE T E +I R+++ +AW+ + ++ Sbjct: 109 AFAIVERVFGGPGS--DLQPQRELTEIELGIIQRVVRDTFGPMKEAWRNVAEIDPAIEAV 166 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELL-VNPPLENSRN 241 E F I +P ++V VEIG G P+S +EP+ L L +++ Sbjct: 167 ETNPVFIQI-ENPTEVVAAITLAVEIGEHLGHMTFAFPYSTVEPVLSRLSPQSWLAETKH 225 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGV 299 + + ++L R VQ + L + A +RL + L L GDV+ ++ + V Sbjct: 226 KSPSDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNK 285 Query: 300 PVLTSQYGTLNGQYALRIEHLIN 322 ++ G + + A++I + Sbjct: 286 LAFQAKPGVVGERMAVQITRRVT 308 >UniRef50_UPI00016C0DBD flagellar motor switch protein FliM n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0DBD Length = 327 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 75/331 (22%), Positives = 153/331 (46%), Gaps = 9/331 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK--DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M + +LSQ EIDAL + E E ++ Y+ + RE L+ LE++ Sbjct: 1 MSE-LLSQEEIDALFAALDTGELDVEEMKEKDKERIVKEYNFARPTKFSREHLRTLELMG 59 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E +AR L L+R I V + + +F +L P L ++ PL+ L+ Sbjct: 60 ENYARLISQYLSGLMRTLVPIKVVSSEAITFSDFTSSLSNPIALAIVDPYPLKNNMLLEL 119 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 S ++ F ++ L GG+G V REFT E ++ R+L+ ++ + W+ + L+ Sbjct: 120 STNVAFAFLERLLGGEGTELEHV--REFTSIELVILIRVLEHFVDYMREPWENMVALKPR 177 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 R E + N+ +P ++V F ++ G + G N+C+P+ +EP+ + L Sbjct: 178 MSRVETNSQILNM-IAPTEMVALITFSIQFGAVDGLMNLCIPYLTVEPIMDKLNTSYQFQ 236 Query: 239 SRNEDQNWRD-NLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 S ++ + R+ N+ ++ + + + A + + + ++L GD++ ++ I + Sbjct: 237 SSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIELQIGDIIRLDTTIDSLIDVY 296 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V V + G + A++I+ +++ + Sbjct: 297 VGNVVKFKAVPGIHKNKSAVQIKQILDKEDD 327 >UniRef50_Q30SP5 Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM n=48 Tax=Epsilonproteobacteria RepID=Q30SP5_SULDN Length = 372 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 86/340 (25%), Positives = 156/340 (45%), Gaps = 14/340 (4%) Query: 1 MGDSILSQAEIDALLNGDSEVK-------DEPTASVSGESDIRPYDPNTQRRVVRERLQA 53 M D ILSQ EIDALL+ + + + S + + YD RV +E+L+A Sbjct: 1 MAD-ILSQEEIDALLDVVDDEDGGGDLFDEMGSDSHTSNRQVTLYDFKRPNRVSKEQLRA 59 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 + I+++ AR + +++R +I + ++ Y EF +LP PT+ N+ +KPL G+ Sbjct: 60 FKGIHDKMARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLEGS 119 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 G++ +PS+ F +D L GG G REF+ E + +L++ + DAW + Sbjct: 120 GVIEINPSIAFPMLDRLLGGKGEPFD--ASREFSDIELSLFETILRVMMSTLKDAWGPVM 177 Query: 174 PLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN 233 + E I N+IVV + IG +G NIC P +EP+ L + Sbjct: 178 EIFPNIESKESSPNVVQIVAQ-NEIVVMVVMEIIIGQSSGMMNICYPVIALEPVLPKLAS 236 Query: 234 PPLENSRNEDQNWRD-NLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPD 290 L + + R+ L + +++ + A + L L +L L GD++ + D Sbjct: 237 RDLMLNETSTKKSRNTELHVLLGGAKVGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADD 296 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 + VDG + G + ++++ +I+ +++ Sbjct: 297 IVTICVDGKDRFRGKIGLRRFRKSVQVTEIIDTERDAVKR 336 >UniRef50_C2ED82 Flagellar motor switch protein FliM n=5 Tax=Lactobacillales RepID=C2ED82_9LACO Length = 336 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 149/336 (44%), Gaps = 12/336 (3%) Query: 3 DSILSQAEIDALLNGDSEVKDEP---TASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 D +LSQ EIDALLN + + + +R YD R+ +E + L +I E Sbjct: 2 DQVLSQEEIDALLNAMNTGEISEDTIEEEKNDAPKVREYDFRRPTRLSKEYINTLHMIFE 61 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F++ L LR + + + AI Y EF ++P T L + H +PL+G+ L+ + Sbjct: 62 DFSKMTGNVLSTQLRTNVSVDLAAIEQISYDEFMHSIPRVTLLGMFHSEPLKGSQLLEIN 121 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGR-----EFTHTEQRVINRMLKLALEGYSDAWKAINP 174 P L + V+ L GG + + F+ + ++ + K + Y +WK I Sbjct: 122 PQLCSLMVELLCGGLDVRTQHPDEKIPSIESFSDIDLALMRELFKEIVNVYKTSWKDIVE 181 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 L ++ + + + SPN+ VV F V++ ++ N+C+P+ E + + L Sbjct: 182 LNSKFDTIDTNPQLSQ-AMSPNEPVVLVTFTVKVFGISTFINLCIPYVFFEGILDKLSIR 240 Query: 235 PLENSRNEDQNWRD-NLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDR 291 +S ++D + R + + ++ + D + + L L GDV+ ++K Sbjct: 241 NWFDSSSDDNEDDSLEIKRGLNNVEMVIETKLGDAQMSFADFLNLEAGDVIRLDKKTTSP 300 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 + +++G P + G +GQ A+ + + + Sbjct: 301 LETYIEGEPFFYVKPGQKDGQLAIELLDKMEGEEDQ 336 >UniRef50_B5Y7E9 Flagellar motor switch protein FliM n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7E9_COPPD Length = 326 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 80/331 (24%), Positives = 150/331 (45%), Gaps = 10/331 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M ++ LSQ EID LL+ + + E +R YD ++ +E+L+ +++++E Sbjct: 1 MAET-LSQEEIDTLLSAIKAGQ--AELVQTKEKVVRKYDFRRPDKLSKEQLRTIQMLHEN 57 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FAR L LR + I++ ++ Y E+ R+L PT + L+ + + + S Sbjct: 58 FARGASTELAGYLRSAMSISIVSVDQVTYQEYIRSLSDPTFMYLVPIIDVTS-VIFEMSL 116 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 VF +D L GG G+ +V RE T E ++NR++ + L+ + +AWK I + Sbjct: 117 DFVFAIIDKLLGGPGKPLREV--RELTSVEATLMNRVMDVYLKHWLEAWKPIVQWNLGKP 174 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL-ENS 239 E F I +D+V+ + ++G T IC+P+ +E + L S Sbjct: 175 TLEYSPGFVQIMPG-SDVVIVITYEEKLGEKTAIGTICVPYMAMEGFVQNLTAHRWFGVS 233 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVD 297 + +W+ L+ ++ +E+ A + S+ + +ILK N GDV+ + + + + V+ Sbjct: 234 KPTPDDWKTTLMEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRSDEEVDLLVE 293 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 G G + AL + Sbjct: 294 GNLFAKGIPGIYQRRKALLVTGRSEEDRKEE 324 >UniRef50_C8W1I5 Flagellar motor switch protein FliM n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1I5_DESAS Length = 334 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 83/331 (25%), Positives = 147/331 (44%), Gaps = 13/331 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESD-----IRPYDPNTQRRVVRERLQALE 55 M D +LSQ EID LL+G + E + YD + +L+ L+ Sbjct: 1 MSD-VLSQKEIDRLLDGLKSGIIKAEDLKEAEIQELRMRYKSYDFRRPNKFSENQLRTLQ 59 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 +++E + R L LR S + V ++ + +F ++P PT L + L PL G + Sbjct: 60 MLHEGYGRLLSSYLTGYLRASIVVRVISVDQFTFDDFVGSVPSPTLLTVFSLPPLTGPAV 119 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + +P +F +D LFGG G+ +V RE T E VI +++ LE AW+ + + Sbjct: 120 LETNPQFLFPIIDLLFGGTGKMSDRV--RELTDIELSVIKKLIPKLLEQLVLAWQDLYEV 177 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNP 234 E E + + +P +I+ F IG + G N+CLP+ M+EP+ L Sbjct: 178 TAELQSIETNPRLMQV-MNPGEIIALLTFSTVIGGTSRGLINLCLPYLMLEPVLSKLSIH 236 Query: 235 PLENSRN-EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDR 291 ++ ++ L + ++L L A + + + L+L GDVL +++ + Sbjct: 237 YRNTRKDMAKEDDLRRLEYWMGQAELTLTAVAGETKISVRDFLQLQEGDVLTLDRRIDED 296 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + ++ Q GT+ A++I L Sbjct: 297 VDLFLEEKLKYKVQPGTMGRFMAVQITSLTE 327 >UniRef50_C6NYG8 Flagellar motor switch protein FliM n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG8_9GAMM Length = 366 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 179/346 (51%), Gaps = 24/346 (6%) Query: 6 LSQAEIDALLNGDSEVK-----------------------DEPTASVSGESDIRPYDPNT 42 LSQ EIDA++ G S + A S I P D Sbjct: 8 LSQEEIDAMMGGGSPSEKNTDADDGPGKTVGTEARRTDQASTSQAPTSSGPTIVPLDLLN 67 Query: 43 QRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL 102 Q R+ R R+ +E++N+RFAR FR LFN LR + DI + +IQ Y E+ + +P+ Sbjct: 68 QDRMNRSRMPTMEVLNDRFARSFRGSLFNYLRVNADIISLSAQIQKYGEYIGKIALPSYF 127 Query: 103 NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLAL 162 ++ L PLRG+ L + P L + ++ FGG+GR K+EGR+F+ EQRV N+++ A+ Sbjct: 128 VMVSLTPLRGSMLFIMDPYLCYAVIEAFFGGNGRLEPKLEGRDFSVIEQRVFNKIIDHAV 187 Query: 163 EGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS 222 E ++ AW+ I L + +RS+++ +F +I S + VV + F +E+ +G+ C+P++ Sbjct: 188 EDFTSAWEPIIKLRPKVLRSDVKSQFVSIA-SSTEGVVGSVFEIEMERWSGKLYTCIPYN 246 Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 +EPLRE LV+ + D +W+ L +Q++ +++ A + LS+ L GD Sbjct: 247 TVEPLREQLVSGVAADQSEMDPSWKQMLHMDIQNAMVDVSVILASQDIPLSRARTLQKGD 306 Query: 283 VLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 VL ++ +V+ + + +YG QYA+++ P + Sbjct: 307 VLSFDRVQDARVYVEDILIGEGRYGAFKNQYAVKLVSYRTPSEEDV 352 >UniRef50_Q2RZE2 Flagellar motor switch protein FliM n=2 Tax=Rhodothermaceae RepID=Q2RZE2_SALRD Length = 372 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 149/346 (43%), Gaps = 17/346 (4%) Query: 1 MGDSILSQAEIDALLNGDSEVK---------DEPTASVSGESDIRPYDPNTQRRVVRERL 51 M LSQ EID LL + DE A E +PY+ R + + Sbjct: 1 MSKP-LSQEEIDVLLGDADAEEQEVPTGGAGDEQDAQAEKEKQAQPYNFKRPRLFSQTQK 59 Query: 52 QALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLR 111 + L ++E FAR + L LR DI++ A+ Y EF + P+ L ++ L Sbjct: 60 RILNQVHESFARDLSVYLSAQLRTIVDISLTAVDQVLYSEFVMSSAPPSALYVLREDELE 119 Query: 112 GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA 171 + P LV ++ L GGDG+ E RE + EQR+++R++K A ++W+ Sbjct: 120 YRSIFEIDPRLVVYTIEKLMGGDGQLMD--ESREVSPIEQRIMSRVMKRAYRKLEESWRK 177 Query: 172 INPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL--RE 229 L VE V E +F I + + + F V + + NIC P+ M+E + R Sbjct: 178 AYELSVEEVAFESNAEFVQIIPAA-EPALVASFDVRVYDEPSFINICYPYLMLEQMLGRS 236 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK- 288 + ++ + RD ++ +++ L A L ++++ +L GDV+P+++ Sbjct: 237 GMEQWISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDVIPLDRE 296 Query: 289 -PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQP 333 D I V+G + G Q ALRI +P + P Sbjct: 297 TDDPIKVFVNGEQKFEAVPGRSGRQRALRITAAESPENVEFDSLTP 342 >UniRef50_B3EAW6 Flagellar motor switch protein FliM n=9 Tax=Desulfuromonadales RepID=B3EAW6_GEOLS Length = 331 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 147/323 (45%), Gaps = 6/323 (1%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSG-ESDIRPYDPNTQRRVVRERLQALEIINERF 61 + IL++AEI+ALLN + + EP +S E YD R + L+I+ + F Sbjct: 2 EKILTKAEIEALLNAVFDGRIEPEKELSKSEGTAVSYDLFNTEAY-RGFVPNLDIVYDGF 60 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 R R+ L N LR+ +I R + +F + LP P + + L PL+G L+ S Sbjct: 61 IRFNRITLSNRLRKVVEIKKVGARSYKFDDFLQTLPSPVCMAIFKLDPLKGAALIAMDSS 120 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L F VD++ GG R + R FT E R++ +L L +W + P ++ +R Sbjct: 121 LAFAIVDSVLGGTSRTALALN-RLFTTLELRLVEMVLADVLADLEKSWAPLYPAKLSLLR 179 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 EM + I P VV V I G +P IEP+R+ L + Sbjct: 180 MEMNPRLVTIVP-PEYQVVTMTVKVHIEENVGTMIFVVPIMTIEPIRDKLKEGMQFDLMA 238 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGV 299 D W L ++ + +EL + ++ L ++L L GD + ++KP ++ V+GV Sbjct: 239 IDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELLVKVEGV 298 Query: 300 PVLTSQYGTLNGQYALRIEHLIN 322 P G +G A++I +I+ Sbjct: 299 PKYQGIPGIRHGNKAMQISDIIS 321 >UniRef50_Q7UNV1 Flagellar motor switch protein fliM n=1 Tax=Rhodopirellula baltica RepID=Q7UNV1_RHOBA Length = 428 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 153/379 (40%), Gaps = 49/379 (12%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVS------------------------------ 30 M + LSQ +++ LL + + + Sbjct: 1 MSNESLSQNQVENLLKAMETADLDEEGTDAPTETKDSAESKDAENATVGSSAPVVGAAHP 60 Query: 31 -----------GESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDI 79 + + YD RV +++++A+ ++E AR+F + LLR ++ Sbjct: 61 ADSKPYSPGVPTGARVTAYDFKRPERVGKDQMRAMHSLHESIARNFGASISGLLRTMIEV 120 Query: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139 + ++ Y EF +L P+ N+I PL G ++ +P L + +D + GGD P Sbjct: 121 KLLSVDQLTYSEFVFSLDNPSCFNVIKPLPLEGHWVLDIAPGLAYAIIDRMLGGDPV-PG 179 Query: 140 KVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIV 199 + R T E R++ R+++L LE AW+ + LE +E + I PN++ Sbjct: 180 ETIRRPLTEIETRLMCRVVELFLEQIVPAWENVIQLEPSIHTTESNPQLAQIVP-PNEVA 238 Query: 200 VNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL--ENSRNEDQNWRDNLVRQVQHS 257 + F V +G G N+C+PF+ IE L N R + + + Sbjct: 239 ILVGFEVLLGKNRGMMNLCIPFNSIEKYNAKLSRNGWVGYGKTNPTPQSRRKIADSIDAA 298 Query: 258 QLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYAL 315 +++V A +R S +L LN GD++ E+ + V V + G G+ A+ Sbjct: 299 PVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALELSVQDVHKFAAVAGAYKGKKAV 358 Query: 316 RIEHLINPI--LNSLNEEQ 332 +++ + P ++ E+ Sbjct: 359 QVQSTVEPKYCEPEVDPEE 377 >UniRef50_A8U604 Flagellar motor switch protein fliM n=1 Tax=Carnobacterium sp. AT7 RepID=A8U604_9LACT Length = 333 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 9/326 (2%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGES---DIRPYDPNTQRRVVRERLQALEIINER 60 +LSQ EID+LL + + E ++ YD R+ +E + L +I E Sbjct: 3 QVLSQQEIDSLLQAVESGEIDAAGIDEQEQEKNKVKSYDFRRPARLSKEYITTLNMIFEE 62 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FA+ L +R + D+ + +I + EF ++P T + L PL GT ++ +P Sbjct: 63 FAKIIGNILSTQIRTNVDVKLASIEQVSFDEFVHSVPRFTLMGLFRSAPLEGTQIIELNP 122 Query: 121 SLVFIAVDNLFGGDG--RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 L VD L G + + FT E ++ +L + + AW+ + L+V+ Sbjct: 123 QLCLQLVDLLCGSSEIRKNDEVMSKNSFTDIEMAILEEILTNFSQSFELAWRDVVDLKVK 182 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +E + T SPN+ VV VE+ + N+C+P+ E + E L + Sbjct: 183 IDSTETNPQILQ-TMSPNEPVVLVTLTVELHGVKTFINVCVPYIFFEGILEKLSLRNWFH 241 Query: 239 SR-NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAH 295 S D L + + + + + + + L L+L GD++P++ D ++ Sbjct: 242 SEKETDHTDSGKLEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLS 301 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLI 321 V+ +P + G A+ + I Sbjct: 302 VEELPRYFVKPGLKGKNMAVEVLQYI 327 >UniRef50_C6N2P9 Flagellar motor switch protein FliM n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N2P9_9GAMM Length = 358 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 165/358 (46%), Gaps = 37/358 (10%) Query: 1 MGDS-ILSQAEIDALLNGDSEVKDEPTASVS----------------------------- 30 M + +LSQ EIDALL E + Sbjct: 1 MAEKNVLSQEEIDALLQSVDESSEGEAQEAETQETADVKSPRKKTPRAGKYAESESDSSI 60 Query: 31 ------GESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAI 84 +S+++ + ++Q R+V+ +L L+ I +R R F ++ L + +IT + Sbjct: 61 ESTVVFDDSEVKTLNFSSQERIVKGKLPVLDRIYDRAVRSFATDIYQLTAKDFEITQDQM 120 Query: 85 RIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGR 144 I + +F +LP P+ +++ KPLRG G+++F + V+ VD FGG +F + + Sbjct: 121 LIIKHRDFMESLPNPSLMSIYKFKPLRGKGIIMFDSTFVYDLVDYYFGGSTQFLAQKDRT 180 Query: 145 EFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPF 204 +FT TE RV+ + + + AWK I L++ E + NI P+++++ F Sbjct: 181 DFTATELRVMEAVTTKLIANLTLAWKPIIQLDISKFNDETNPQLVNIAE-PDEMLLVVRF 239 Query: 205 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVAN 264 ++ G TG+F LP++M+EP++E L D NW +L ++ +L + + Sbjct: 240 SLDFGKETGDFYFILPYTMVEPIKEQLELGASRPDDEIDPNWVKSLKEELMDVELVISSA 299 Query: 265 FADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 A L ++ GD +P+E + + V+G P T+ GT N + AL+I I+ Sbjct: 300 MAQTKSTLGTVMSWQAGDFIPMEMKEIVTLDVEGTPGYTATLGTANEKRALKIIKNIS 357 >UniRef50_Q5ZUK6 Flagellar protein n=4 Tax=Legionella pneumophila RepID=Q5ZUK6_LEGPH Length = 355 Score = 232 bits (593), Expect = 9e-60, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 165/352 (46%), Gaps = 32/352 (9%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVS----------------------------- 30 M + +LSQ EIDALL+ E D+ T Sbjct: 3 MTEKDVLSQEEIDALLDSVDESIDDETNDEELSSRDQPVRKKPEDTTSQELNSNFDSDKK 62 Query: 31 -GESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPY 89 E ++ + Q R+V+ +L L+ I +R R F +++L R +I + I + Sbjct: 63 VAEEGVKTLNFTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKH 122 Query: 90 HEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHT 149 EF R+LP P+ + + KPLRG G+++F + V+ VD FGG+ +F + + +FT T Sbjct: 123 KEFMRSLPNPSLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTAT 182 Query: 150 EQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG 209 E RV+ + K + A + I L+V E + NI P ++++ F + G Sbjct: 183 ELRVMEVVTKKLVTNLIHACEPIIQLDVTKFNDETNPQLVNIAE-PEEMLLVARFVLNFG 241 Query: 210 NLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADIS 269 TG F LP+SM+EP+++ L D NW ++L ++ +L + A+ A+ Sbjct: 242 KETGAFYFILPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETV 301 Query: 270 LRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 L Q++ GD +P+E + + ++G P T+ G+ N + AL++ +I Sbjct: 302 STLGQVMAWKVGDFVPLEINEEVTLDIEGTPSFTATLGSANEKRALKVIKII 353 >UniRef50_B0MPD5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPD5_9FIRM Length = 331 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 147/334 (44%), Gaps = 16/334 (4%) Query: 1 MGDSILSQAEIDALLNG-DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D+ L+Q +IDA+L+ S + + +I+ YD T ++ +E+++ LE I E Sbjct: 1 MADT-LTQEQIDAMLSSVLSGGDTASLDTHEEKEEIKEYDFRTPKKFTKEQIKILERIFE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL-----KPLRGTG 114 ++RH + LLR +++ +I Q Y EF+ LP T + ++ L Sbjct: 60 NYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNA 119 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 ++ S SL F +D + GG G + R+FT E V+ +++ S AW Sbjct: 120 ILQLSNSLTFTMIDRMLGGRGT--YQDTDRDFTEIEINVMRGIVERFTSLMSQAWDGYVD 177 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + E + + + ++ ++ V + + + C+ ++ + + Sbjct: 178 TNPKLESIETNSRVISAADA-DETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAK 236 Query: 235 PLE----NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP- 289 S ++ ++NL+ + S+L + A D L L +L L D++P+ KP Sbjct: 237 FSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPI 296 Query: 290 -DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 D + V + GTLNG+ A RI++++ Sbjct: 297 TDNVQLKVGSTCWFDGKLGTLNGKKAFRIDNILK 330 >UniRef50_Q1Q6R4 Similar to flagellar motor switch n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6R4_9BACT Length = 318 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 130/324 (40%), Gaps = 12/324 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGE--SDIRPYDPNTQRRVVRERLQALEIIN 58 M D+ILS E+DALLN + + + ++ YD R RE+ + L+ I+ Sbjct: 1 MSDAILSNEEVDALLNAIESGQVLVGEQIEQKVVKKVQHYDFRRPDRFPREQKRQLQKIS 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E A + + +R + + + AI Y F + +++ L P RG G + Sbjct: 61 ENMAVNMGLTFSQYVRTTVGVELIAIEEFSYELFLNSFTDLVCASVVDLTPYRGKGCLTL 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +D GG G+ K+ R T E+ V++++L L W + +E + Sbjct: 121 DAGFCLAMIDRGLGGPGKIQQKI--RPLTIIEESVVSQVLSNVLHSMCLCWNDVAEIEWQ 178 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +++M ++ + + + ++ F + TG CLP + +E + + L Sbjct: 179 IAKTDMDLRSLQVAHN-TESMIAINFAISGELGTGTLVFCLPVATLEAVMGKITEATLNR 237 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 + + + L + L ++++ L GDV+ ++ D + + Sbjct: 238 EEEIVI-----IKQTLNQVPLLVNTILGTTQLSFNELINLRVGDVISLDNKITDHLSLEI 292 Query: 297 DGVPVLTSQYGTLNGQYALRIEHL 320 D VP G + A++I + Sbjct: 293 DEVPKFFGTPGVSGKKLAIKITSV 316 >UniRef50_Q2NX04 Flagellar motor switch protein FliM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NX04_SODGM Length = 340 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 150/307 (48%), Positives = 200/307 (65%), Gaps = 4/307 (1%) Query: 28 SVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQ 87 P+D +RR ERL+ LE+IN+ FA FR LF L++R DI+ AI IQ Sbjct: 35 PSPKTGSGSPFDAAQRRRQGGERLKGLEMINQDFAGRFRSALFILMQRRTDISAEAILIQ 94 Query: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 PY EFA L P +LNLI LKPLRG L F+P L+F +D LFGG GR P E R FT Sbjct: 95 PYREFAAQLRPPASLNLIDLKPLRGNTLFAFTPGLIFTTLDTLFGGSGRLPDAQE-RAFT 153 Query: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVE 207 EQRVI+R+LKL L+ Y DAW ++PLE E++ +E +FT S ++VV +PF V Sbjct: 154 PAEQRVIDRLLKLMLQAYGDAWLGLHPLEPEFITAETSCRFT--GFSDGEMVVISPFRVA 211 Query: 208 IGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFAD 267 IG + GEF I + +EPL E+L P E+ R + +WR NL RQ+Q ++LELVA FAD Sbjct: 212 IGAMQGEFAIVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARQLQGTELELVARFAD 271 Query: 268 ISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 + L LS++++L GD+LPI +PDR+ A VDGVPV YG+LNG+YALR+EH+IN ++ Sbjct: 272 LPLCLSRVMELRRGDILPIPRPDRLTACVDGVPVFLGNYGSLNGRYALRVEHVINQGIDQ 331 Query: 328 L-NEEQP 333 L N++ P Sbjct: 332 LNNKDIP 338 >UniRef50_B6IQ99 Flagellar motor switch protein FliM n=2 Tax=Rhodospirillum centenum RepID=B6IQ99_RHOCS Length = 352 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 145/319 (45%), Gaps = 11/319 (3%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 + LSQ EID LL+ + K T SV + + V +RL L+++ +R Sbjct: 27 SEKTLSQTEIDRLLD-VDDSKSVRTRSVIDQIVNSSF-------VNYDRLPMLDVVFDRL 78 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 R NL + ++TV I + ++ +P+P+ + ++ + L+ Sbjct: 79 VRLLNTSFRNLTSGTVEVTVQQIASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSE 138 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L++ VD L GG P ++GR +T E+ + R+++ L+ A+ ++ + R Sbjct: 139 LIYSIVDILLGGRRSDPAPIDGRPYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACER 198 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 E +F IT S N+ ++ F V + G ++ +P++ +EP+R+LL+ + Sbjct: 199 VETTPQFAVITRS-NNACISARFQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFG 257 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGV 299 D W +L +++ + ++L A + L+ +L G L ++ + + V Sbjct: 258 RDSMWETHLKNELRRTSVDLSAVLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHV 317 Query: 300 PVLTSQYGTLNGQYALRIE 318 P+ + G NG A+RI+ Sbjct: 318 PMFVGEMGQRNGNVAIRID 336 >UniRef50_A9HHK3 Flagellar motor switch protein FliM n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HHK3_GLUDA Length = 395 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 154/337 (45%), Gaps = 16/337 (4%) Query: 1 MGDSILSQAEIDALL-NGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MG +L Q+EID+LL N + + + + V ERL LEI+ + Sbjct: 52 MGGHVLDQSEIDSLLGNAFGGLPIKEESGLERVIK--------AGFVAYERLPMLEIVFD 103 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R R L + + +IT+ +R + ++ +P + + GL+V Sbjct: 104 RLVRMLSSTLRSFTNDNVEITIDGMRSMSFGDYMNAVPSSSLFAVFKAVQWENYGLIVID 163 Query: 120 PSLVFIAVDNLFGGD-GRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +L + +D L GG G VE R T E+ +I +++ L L S A+ + +++ Sbjct: 164 SALSYSIIDILMGGPRGVGYAGVEARPHTAIERALIEKLVTLTLNDLSTAFNPVCTIDLT 223 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 + R E+ +F I + N VV T H+++ + +G ++ +P+ +EP+R+ L + Sbjct: 224 FERLEVSARFAAIARASN-AVVMTKLHIDMEDRSGSLDLIIPYVTLEPVRDQLSQQFMGE 282 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK----PDRIIA 294 D W +LV ++ + +++ A F + ++ LS++L L PG ++ P + Sbjct: 283 RFGRDSKWEGHLVSEILETDIQVSAVFEEKTILLSEVLGLRPGMLISFPHQNGTPIHVRL 342 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEH-LINPILNSLNE 330 P+ + G L + A++IE L+ P +NE Sbjct: 343 QCGQTPLFEGRLGKLQDKAAVKIEKRLVPPAGPHMNE 379 >UniRef50_A8ERA3 Flagellar motor switch protein FliM n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERA3_ARCB4 Length = 368 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 156/338 (46%), Gaps = 11/338 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASV-----SGESDIRPYDPNTQRRVVRERLQALE 55 M + LSQ EIDALL+ + D + + E + YD RV ++L+AL Sbjct: 1 MAE-FLSQDEIDALLDIAEQGDDIDGTNPLDKFTAKEKNYSIYDFKKPNRVTLDQLKALT 59 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 ++++ R F L ++LR+ DI + I Y EF ++P T+L+ + +KPL G + Sbjct: 60 TMHDKMLREFINDLSSMLRKIVDIKLTTIEQMTYGEFILSIPQVTSLSTLSMKPLDGRIV 119 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + +P++ + +L G RE T E +V+ K+ ++ W I+ L Sbjct: 120 IECNPTISHKVIADLLGSGAVNTMDNLDRELTEIEIKVLEHFYKMFIKILYKTWSDISSL 179 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 S+ I S +DIV+ F + I +G +IC P S IEPL +V+ Sbjct: 180 NFRIESSDTNANAIQIV-SDHDIVLLVVFEITIDEDSGFLSICYPISYIEPLLNKIVDKI 238 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK---PDRI 292 +N+ + ++++ + +++++ A A+ L ++IL L D++ K Sbjct: 239 FSEGKNKKLSRKEDIKTLISGARMKVEAIMAETELTTAEILNLKENDIIVFNKNASSSSA 298 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLIN-PILNSLN 329 +++ ++ G N + A++I+ ++ +L+ Sbjct: 299 TVYINKKEKFSAVSGISNNRKAVQIKANLDREKQETLD 336 >UniRef50_Q5FT23 Flagellar motor switch protein FliM n=1 Tax=Gluconobacter oxydans RepID=Q5FT23_GLUOX Length = 343 Score = 221 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 151/330 (45%), Gaps = 17/330 (5%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQAEID+ KD + S I + V ERL LE++ +RF Sbjct: 11 DHVLSQAEIDSFF-----GKDSVVTGAADSSGIERV--VSTSGVSSERLPMLEVVFDRFT 63 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R L N + + ++ + Q + ++ N+P + + G+VV S SL Sbjct: 64 RILTTSLRNFTSDNVEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSL 123 Query: 123 VFIAVDNLFGGDGR-------FPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 ++ VD L GG R ++ GR T E+ +I M+++ L+ ++ + + Sbjct: 124 IYSIVDALLGGHVRGDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFSPLCAV 183 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + R EM +F I + N VV F +++ G+ +I LP + +EP+R++L+ Sbjct: 184 NFHFERLEMNSRFAMICRAGNG-VVTARFGIDMEGRGGDVDIVLPHATLEPVRDILLQQF 242 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRII 293 + D W ++L R++ + L L A + ++ L I+KL PGD L + + + Sbjct: 243 MGEKFGHDGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVS 302 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 + T + G GQ A++IE ++N Sbjct: 303 LRCGEHVLFTGRVGRKQGQVAVKIEDVLNQ 332 >UniRef50_C8WYW2 Flagellar motor switch protein FliM n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYW2_DESRD Length = 336 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 159/323 (49%), Gaps = 8/323 (2%) Query: 3 DSILSQAEIDALLNGDSEVKD----EPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 D +L+Q EI+ LL + E S D++ D + R R+ +II Sbjct: 2 DKLLTQDEINDLLEAIESGEVDIDAEADEPSSSNRDLQRLDLFRGQTSARWRVANFDIIL 61 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + FAR+ + + N L+RS + AI + + F ++L + + ++ +PLR GL++F Sbjct: 62 DAFARNSGISMANRLKRSVSVKRVAIETETFENFLQDLQEQSLIGIVSFEPLRSGGLLIF 121 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 L F ++ +FGG+ + RE T E V+ +++ + + + A++ ++ L+ Sbjct: 122 DCPLSFCLLEVMFGGNSEAGISIPDRELTSIEINVLKNVMRDSCQDWEAAFEPLDELKTN 181 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE- 237 V++E+ + +I + + V+ + F V+ GN+ G+ ++ +PF IEP +E L N + Sbjct: 182 LVQAEINPRLVSIVSPETE-VLVSRFSVKAGNIFGQMSLVIPFFAIEPYKEKLKNRMFDV 240 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRI--IAH 295 + + Q W + ++ + E+ A FA SL + +IL L GD++ + + Sbjct: 241 ITVSGGQAWTKTIHDEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQRVL 300 Query: 296 VDGVPVLTSQYGTLNGQYALRIE 318 V+ P + GT G+ A+RI Sbjct: 301 VEQKPKFQAVAGTRKGKKAVRIT 323 >UniRef50_A0LT67 Flagellar motor switch protein FliM n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT67_ACIC1 Length = 314 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 136/301 (45%), Gaps = 5/301 (1%) Query: 26 TASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIR 85 + + + +PYD ++ R ++ L I E F R F L + L + + A+ Sbjct: 13 PRTHARSREPKPYDFRRPNKLNRAHVRTLHIAYETFCRQFTTVLTSTLGVFSLVELVAVE 72 Query: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145 Y ++ +LP PT L LI L PL+GTG++ + VD + GG G + R Sbjct: 73 QMSYVDYVESLPTPTFLALISLDPLQGTGILQLPLETAMLCVDRVLGGPGS--AQQPTRL 130 Query: 146 FTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFH 205 T E ++ + + A++ A++ + + + + E +F P+DIVV Sbjct: 131 PTDVETEIMKMVTRRAVQELRYAFEGLVQVSPDVIGIETNPQFAQAAV-PSDIVVVASLE 189 Query: 206 VEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANF 265 +++G+ G + +PF+ + P+ E +P + R+ + + L +++ ++E+ F Sbjct: 190 IKVGDQDGAATLMIPFTGLYPVLEAAASPKRGDRRDLLERSQAALRARLEDVEIEVAVQF 249 Query: 266 ADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 ++L ++L L+ GDVL + P ++ +G+P + G+ Q A + Sbjct: 250 PYVALTPHELLNLSVGDVLSLRHPTNAPLLITAEGIPFAYAVPGSNGRQAACLVVEPPQE 309 Query: 324 I 324 Sbjct: 310 G 310 >UniRef50_P34009 Flagellar motor switch protein fliM n=45 Tax=Alphaproteobacteria RepID=FLIM_CAUCR Length = 373 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 142/324 (43%), Gaps = 11/324 (3%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 + IL+Q EID+LL D + V ERL LEI+ +R Sbjct: 48 SERILNQDEIDSLLGFDLSGDGSDDRTGIRA-------IINSALVSYERLPMLEIVFDRL 100 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 R L N + ++++ I + ++ ++P+P L + + L GL+ + Sbjct: 101 VRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPGILAVFRAEELDNYGLLTVDSN 160 Query: 122 LVFIAVDNLFGG-DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 L++ VD L GG G ++EGR +T E+ ++ RM+ + L A++ ++P+ Sbjct: 161 LIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMIDVVLHDLKSAFEPLHPVSFSLD 220 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 R E F I N + +++ + G + LP++ +EP+R++L+ + Sbjct: 221 RLETNPPFAAIARPANAA-ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKF 279 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGV- 299 D W +L ++ +Q+E+ A + + LS++L + GD L + R Sbjct: 280 GRDNIWEGHLATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATSRQPGGAARRR 339 Query: 300 -PVLTSQYGTLNGQYALRIEHLIN 322 P+ + G N A+R E ++ Sbjct: 340 IPLTRGRMGRRNHSIAVRAEAPVD 363 >UniRef50_B0P9Y0 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9Y0_9FIRM Length = 329 Score = 213 bits (542), Expect = 7e-54, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 149/319 (46%), Gaps = 19/319 (5%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + LSQA+IDALL S + V + I+ YD + ++ +E+L+A++ ++E Sbjct: 1 MPEQ-LSQAQIDALLKKMSSGEVA----VEEKQTIKEYDFKSPKKFTKEQLKAMDGLHET 55 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKP-----LRGTGL 115 F+R L +LR D+ V I + Y+E+ LP + ++ + P GT + Sbjct: 56 FSRLLSSYLSGILRIGCDVQVLQIDEERYYEYNNALPDTALIGIVGMDPEGEDYSEGTMI 115 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + S ++ F VD L GG G R++T E +I+ + K + D+WK + Sbjct: 116 IDVSTTMGFYLVDRLLGGSGDDFNFT--RDYTEIEMAIIHTIFKEIVGKLEDSWKNSIEV 173 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 ++ E + I +P D V+ +++ G L +IC+P +E + + Sbjct: 174 KMTLDSIETNSRLLQI-FAPEDTVIIVVINIKAGKLNATMSICMPADNMEEIIDKFSMKY 232 Query: 236 LENSRNEDQNWRDN----LVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--P 289 +++R D L+R V + L + A F + L IL+L P D++P+ K Sbjct: 233 SKSNRRTDPEKEQMRKEVLLRGVCDTDLPIKATFDQFKMDLKDILQLQPSDIIPLNKKIT 292 Query: 290 DRIIAHVDGVPVLTSQYGT 308 D I +DG+P T++ G Sbjct: 293 DDIQVTLDGLPWFTAKLGE 311 >UniRef50_B1ZR35 Flagellar motor switch protein FliM n=3 Tax=Verrucomicrobia RepID=B1ZR35_OPITP Length = 351 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 139/341 (40%), Gaps = 20/341 (5%) Query: 1 MGDS-------ILSQAEIDALLNGDSEV--------KDEPTASVSGESDIRPYDPNTQRR 45 M D IL Q+EID LL + V + E + + PYD Sbjct: 1 MADDPSNSTGSILDQSEIDKLLAQEMAVAPPKQFLLRPEGARGPTPVLKVEPYDFRNPVF 60 Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + L+ L +++E F R+ L LR + + + Y +F +LP PT+L L Sbjct: 61 LSEVELRRLRLLHEDFIRYLAARLSLYLRMELGLKMAKLTTATYAKFTDSLPSPTHLCLF 120 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 ++PL G G++ +P L D L GG G + R T E ++ ++ + LE + Sbjct: 121 KVEPLIGVGILDINPRLALTIADRLLGGRG--HSVKAERYLTEIEIALLEDVVNIVLEEW 178 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 WK L + + E +F T+ + IV+ G+ + + I +P+ IE Sbjct: 179 CTQWKTEQELRPQIIGHENNGRFLQ-TSPKDAIVLILTLEANFGDCSEQIQIGVPYYTIE 237 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 P+ + + +++ + +H ++ + A ++ + + L +++ L GDV Sbjct: 238 PVVKKMQARRQKDTAVSTTAKKAEWQAAYEHIKVPVRAEWSAMDISLREVVSLRVGDVFE 297 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 + ++ VP G + + A+++ P Sbjct: 298 LPASIFHETRVLLNNVPKFVGTVGLDSDRVAVQLTRKTVPG 338 >UniRef50_Q1IR62 Flagellar motor switch protein FliM n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR62_ACIBL Length = 329 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 132/323 (40%), Gaps = 7/323 (2%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASV-SGESDIRPYDPNTQRRVVRERLQALEIINERF 61 D +L+Q EIDA+ ++ + S + P++ ++ RE+++++ ++E F Sbjct: 2 DKLLNQEEIDAIFRAVRTGENAGSGSEGERGRKVEPWNYRQAGQINREQVRSISSLHEGF 61 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR+ L LR + + ++ Y E LP + + G + S Sbjct: 62 ARNLTHSLGAYLRVPFEANLVSVEQLTYRELLGRLPEVAYYSTFRIGTADNIGAMEMDLS 121 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L F +D L GG G +V RE T E++++ + K+ + AW+ + +E + Sbjct: 122 LAFPMIDILLGGQGGHDEQV--REITEIEEQILEVVAKVVCKELETAWQPLG-MEFAFEA 178 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 + + P + ++ F +E+ G N+ + L L ++ Sbjct: 179 RQQAAQL-QRLMPPTEKILALCFELEMPGCRGSLNLAFSAVVSNALLRKLSKDWGYRRQS 237 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDR--IIAHVDGV 299 + + L R++ + D S+R+ ++L+L GD+LP+++ I V G Sbjct: 238 RESDGDGKLHRKLLGCPFPVSLGLVDASVRVRELLQLRAGDILPLKRSAESAIELSVGGR 297 Query: 300 PVLTSQYGTLNGQYALRIEHLIN 322 ++ A +I I+ Sbjct: 298 ASFRARPVRSGNWRAAQILGRIS 320 >UniRef50_Q1JZS7 Flagellar motor switch protein FliM n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZS7_DESAC Length = 329 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 74/328 (22%), Positives = 144/328 (43%), Gaps = 11/328 (3%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGE------SDIRPYDPNTQRRVVRERLQALEI 56 + ILS+ EI LL+ + + S E + + + RL +I Sbjct: 2 ERILSKDEIAELLSAVKDGTLDAELESSDEDYSPEPRAVSSFSLVQSKGQATMRLANFDI 61 Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 + + FAR+ L N L+R+ + +I Y ++ L PL+ GL+ Sbjct: 62 LLDGFARNLSFSLSNRLQRAVSVLRESISSMEYETLIHECSNHELYGILSLDPLKKNGLL 121 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 +F S+ F V+ + GG + R T E ++ +++ + + A+ I LE Sbjct: 122 IFDSSISFAQVEIMLGGVAEHSGDLPQRGMTTIETNILKEVIRESCLELNKAFSPIEGLE 181 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + VR E + I + +++V F V+I ++G + +P+S ++P+RE L + Sbjct: 182 SDLVRVESNPRLVTIVPADTEMMVAA-FRVKINEISGLLRLVIPYSSLDPIREKLKSEL- 239 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIA 294 + WR +L +V+ + + A A I+L + +IL L GD+L ++ + Sbjct: 240 -GASGPGGQWRSHLAHEVEDMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPVSV 298 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLIN 322 V+G + G +G+ A+R+ ++ Sbjct: 299 MVEGKGKFSGLAGLRDGKKAVRVLERLH 326 >UniRef50_B9L5A2 Flagellar motor switch protein FliM n=2 Tax=Thermomicrobia (class) RepID=B9L5A2_THERP Length = 334 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 122/322 (37%), Gaps = 12/322 (3%) Query: 17 GDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRS 76 S + A+ PYD + ++ +++++ I+E F R L +R + Sbjct: 2 SLSRTRPTTRAARRERGKPIPYDFRRPDKFSKDHIRSIQSIHEAFDRFASNYLSAQVRSA 61 Query: 77 PDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGR 136 +G I ++ LP L + L+PL G ++ + VD + GG G Sbjct: 62 VHCELGPIEQTTLGDYLDRLPSQVVLCIAELEPLVGRIVLEIDFATASRLVDRMLGGAGE 121 Query: 137 FPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPN 196 T E ++ + + AW+ + L+ + + + P+ Sbjct: 122 ERPPFTATTITEIELLLLRELGNGLFGELAAAWEQVIRLQPQPCEVVLSGQQIQ-GMMPS 180 Query: 197 DIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP--PLENSRNEDQNWRDNLVRQV 254 +IV+ V + G F + LP S +EP+ L R +L+ Q+ Sbjct: 181 EIVLLVQHQVRLFESEGTFTVVLPASTLEPVLPRLNARVLFANPRRATSPQVIADLMAQL 240 Query: 255 QHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQ 312 + L+L L + ++L L PGDVL +++ + +V+ P + G Sbjct: 241 EEVSLQLRVELGRARLTVRELLALEPGDVLVLDQDVSFPLAVYVENEPCFYAFPGQRGRS 300 Query: 313 YALRIEHLINPILNSLNEEQPK 334 A+RI +L E+ P+ Sbjct: 301 LAIRIA-------GTLTEDWPR 315 >UniRef50_A5V6A6 Flagellar motor switch protein FliM n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V6A6_SPHWW Length = 331 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 147/326 (45%), Gaps = 7/326 (2%) Query: 6 LSQAEIDALLNGDSEVKDEPT----ASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 LS E+ AL++ S++ + V D+ PY ++ L LE +NER Sbjct: 8 LSGDEVAALMDELSDISFDQEGVEPPKVRQVRDVEPYALGQRKDRPVAHLAHLERMNERI 67 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR R + + + + + + + E+ RN +L+L ++P++G +V PS Sbjct: 68 ARRLRDVIEPIAQTRSKVDPIPLETRRFDEWQRNQADHMSLSLFRVRPVKGMMMVAVEPS 127 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 V VD +GG G T +G EFT +EQR+ R+ +E + W PL+ ++ Sbjct: 128 FVTNMVDAFYGGTGNGLT-TKGGEFTPSEQRLQRRLTDAIVEVLTRVWSDTFPLQFDFST 186 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 E F N+ + ++ VV F ++ G + + I P S+++P+ + + + Sbjct: 187 HETNAAFANMVRA-DEPVVVQSFTIKPGMSRSTRVEILYPLSLLQPIEDQIAARTQAGAD 245 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 +D W+ L+ + L + + A + ++Q+L L PGDV+P+ + V Sbjct: 246 GDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDVIPVNLSQTVPLLVGNRR 305 Query: 301 VLTSQYGTLNGQYALRIEHLINPILN 326 G +G+ AL IE L +L Sbjct: 306 FAEGTIGEQDGRAALMIESLNKEVLK 331 >UniRef50_C2KZ05 Flagellar motor switch protein FliM n=1 Tax=Oribacterium sinus F0268 RepID=C2KZ05_9FIRM Length = 395 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 68/349 (19%), Positives = 133/349 (38%), Gaps = 25/349 (7%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDI---------------RPYDPNTQRR 45 M D +LSQ++IDALL + + +++ YD + R+ Sbjct: 1 MAD-VLSQSQIDALLKSMQDGPPKEEKVEEKPAEVLETKKEEVQKEEETYSKYDFYSPRK 59 Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 +++++ L I + +AR + + R DITV +R Y+E+ + ++ Sbjct: 60 FTKDKIRLLRSIFDNYARILTSQVNGIFRTMTDITVLELRETRYYEYVNAFHENDCMTIV 119 Query: 106 HLKPLRG-----TGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL 160 + SP L V ++ GG E +T E + R+++ Sbjct: 120 DTYVQDKGKSNVPMMSYISPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEY 179 Query: 161 ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGE-FNICL 219 + D + E + + E ++ VV +V+I L E ICL Sbjct: 180 IVHALGDGFSNYISAEFKIAKIETNPSMVQEV-GLDETVVLAVMNVDISGLAMERIRICL 238 Query: 220 PFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLN 279 P +++E + +++ N +N +D ++ ++ S + + L + + L Sbjct: 239 PGTLLEHMFKIIDNRKHLARGFAYENNQDTIMEHLKASSFPMTGQLGVVKLDIEDLYHLK 298 Query: 280 PGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 GDV+ + K + +V P T + G A+RIE I + Sbjct: 299 VGDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRIIQKDD 347 >UniRef50_Q0FMH0 Flagellar motor switch protein fliM n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FMH0_9RHOB Length = 313 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 118/289 (40%), Gaps = 4/289 (1%) Query: 45 RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNL 104 ++ RL LE++ +RF+ L + L ++++G I + ++ P P+ +++ Sbjct: 23 KLSYARLPMLEVVFDRFSLSLAQTLKSYLGAMAEVSLGGIDYLSCQDALKDQPDPSLISV 82 Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEG 164 + GT + +P L+F ++ FGG + + R FT E+R+ + L Sbjct: 83 TTAEEWGGTIAAIMTPELLFGIIEITFGGRTVATGEKKTRNFTSIEKRIGQNFTETVLTE 142 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMI 224 S+A+ + P+ + E K + P V ++I GE LP + Sbjct: 143 LSNAFAKVTPVNFDISHLETNPK-ALLLAPPTSACVRARLTIDIEGRIGEMVFVLPNTAF 201 Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 E + +L D WR + + + + + A L + +L PG VL Sbjct: 202 EKVSHILSQQFTGGQLGGDSGWRLKMTDMLGSTNVPMSAVMGQAVLPMRDVLAWAPGQVL 261 Query: 285 PI--EKPDRIIAHVDGVPVLTSQYG-TLNGQYALRIEHLINPILNSLNE 330 + + D + G + ++ G NG+ AL++ + +S ++ Sbjct: 262 DLGIQVDDPVTLCCAGKEIARAEVGHRKNGRIALKLSEKLYEEKDSPDD 310 >UniRef50_B9KJD8 Flagellar switch protein n=8 Tax=Rhodobacterales RepID=B9KJD8_RHOSK Length = 323 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 142/316 (44%), Gaps = 5/316 (1%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS E+ AL+ E + S+ ++RPY AL IINERF R Sbjct: 8 LSSKEVAALVGNLMEAS--ESTSLENGLEVRPYAFGENELNQLGDYHALRIINERFCRTA 65 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R +LR P I+ ++ + ++ + ++ ++ LRG ++V P + + Sbjct: 66 RDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVIPPPFISL 125 Query: 126 AVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQ 185 D+ +GG R EFT TE+RVI + AW+ + L V E Sbjct: 126 LTDSYYGGQIRHVP-TTRTEFTATEERVIELVTDRLNVALQVAWRDLMALTFTVVSREES 184 Query: 186 VKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244 ++F + D+VVN F V++ N F+I P ++P+ L + + ++D+ Sbjct: 185 MQFASFVDG-EDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQLRSRMQSDFVDDDR 243 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTS 304 +WR+ L R + L L A + + L Q++++ PGDVLP+ + + V+G P+ + Sbjct: 244 SWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTEAVSLLVEGQPIFEA 303 Query: 305 QYGTLNGQYALRIEHL 320 G GQ AL + Sbjct: 304 APGERGGQAALNLTRR 319 >UniRef50_A0LDL0 Flagellar motor switch protein FliM n=4 Tax=cellular organisms RepID=A0LDL0_MAGSM Length = 332 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 142/334 (42%), Gaps = 15/334 (4%) Query: 1 MGDSILSQAEIDALLNGDSEV-------KDEPTASVSGESDIRPYDPNTQRRVVRERLQA 53 M ILS EIDAL+ G E ++ ++ E P+ + + L Sbjct: 1 MS-QILSTDEIDALMMGLEEGTIDLDEIDEDMPSASKDEKKTTPFTFGQKTAIRVGALPG 59 Query: 54 LEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT 113 L++INE A L + R + Q + F + P +N++ ++P + Sbjct: 60 LDLINEHLASQLSFKLTQKVGREVHVQPKTTTNQVFGRFLHTVEPPIFINILRVEPSQSM 119 Query: 114 GLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAIN 173 L+ +++ ++ FGG G + R F+ E +VI+R++ +A E +WK ++ Sbjct: 120 ALISIDGDVMYTVLEGFFGGPGDS--ERPFRNFSPFEMKVIDRIMDVAREQIELSWKKLD 177 Query: 174 P-LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV 232 P + R E Q +F + ++ V F VE+G+ G IC P ++E ++ L Sbjct: 178 PSFRLVLARWENQPQFAAV-MPLDETVFLITFSVEVGDAEGNITICFPAVILELFKQQLK 236 Query: 233 NPPLENSR-NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD--VLPIEKP 289 + W D L ++ ++++ + + + Q+L L GD +L + Sbjct: 237 QGFQQKEEVEGASAWMDALKNELSLVRVDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMS 296 Query: 290 DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 + + + G+ G ++G+ A+RI + P Sbjct: 297 EEMAVQIGGMDKFMCHAGVVDGKRAIRITRTVQP 330 >UniRef50_B9IWG1 Flagellar motor switch protein FliM n=70 Tax=Bacillales RepID=B9IWG1_BACCQ Length = 328 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 133/330 (40%), Gaps = 10/330 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPT--ASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M LSQ +IDALL +E ++ P + + YD N + E L++L+ I Sbjct: 1 MSGDKLSQEQIDALLKAVNEGEEMPAFAQEAGKQDKFQEYDFNRPEKFGVEHLRSLQAIA 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPY-HEFARNLPVPTNLNLIHLKPLR--GTGL 115 F + L +R D+ + P+ E+ +P L + L G + Sbjct: 61 STFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIV 120 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + + V + GGD + + R T E ++ + L + +++++ + Sbjct: 121 IEIDLAFVIYIHECWLGGDSKRNFTM-RRPLTAFEFLTLDNIFALLCKNLEQSFESVVAI 179 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + +V +E ITT+ +DI+ +++ I +PF +E + + L + Sbjct: 180 KPTFVTTETDPNALKITTA-SDIISLLNVNMKTDFWNTTVRIGIPFLSVEEIMDKLTSEN 238 Query: 236 -LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRI 292 +E+S ++ + + + +V + + + + +I ++ GD++P+ D + Sbjct: 239 IVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDIIPLHTKVSDEL 298 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + VDG G + AL + + Sbjct: 299 LGFVDGKHKFNCFIGKDGTRKALLFKSFVE 328 >UniRef50_Q1YV70 Flagellar motor switch protein FliM n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV70_9GAMM Length = 330 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 105/329 (31%), Positives = 171/329 (51%), Gaps = 7/329 (2%) Query: 1 MGD--SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D ++LS E+DAL G + E ++ E +D + + + A+++IN Sbjct: 1 MADINNLLSPEELDALTAGLQDGSIEADTGLNSEVKAMRHDLTNEDSSLGVNIGAVDMIN 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 ERF R FR+GL +LR +P + +G ++I + E+ R+L P ++N I L PLRG + V Sbjct: 61 ERFIRQFRLGLLEVLRTTPKVGMGDVKIMKFGEYLRDLSAPLSVNTIRLNPLRGYSMAVI 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTK-VEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 PS+VF A+DN FGG GR K GR FT TE +I ML + +AW I + Sbjct: 121 EPSIVFAALDNFFGGFGRGFDKLPPGRLFTPTETSIIKIMLDVLFGSLKEAWAPILAINC 180 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRELLVNPPL 236 E+V SE+ +F I ND+VV + F ++G N++G ++ P++ ++P+R+LL + Sbjct: 181 EHVNSEINPQFAQIA-DENDLVVVSRFGADLGRNISGNIDLVYPYNSLKPIRDLLRSRVQ 239 Query: 237 ENSRN--EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIA 294 + D+ W L ++LE+ +I LS+ ++ GD++ K + Sbjct: 240 TGDGDDISDKEWSAELQSAAVDAELEVTVELGEIETTLSKFEAMSEGDIVYFSKSEHARV 299 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINP 323 +V+ VPV + G Q A RI + P Sbjct: 300 YVNSVPVFDADVGANGSQMAARIIKPLAP 328 >UniRef50_A6Q2L2 Flagellar motor switch protein FliM n=4 Tax=Bacteria RepID=A6Q2L2_NITSB Length = 326 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 153/322 (47%), Gaps = 9/322 (2%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M + LSQ EIDALL GD E + SDIRP+D + + + LE+I E Sbjct: 1 MSEQDFLSQEEIDALLGGDGSE-QEEESGTEELSDIRPFDFDELESIKKGGFPGLELIYE 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R+ + FR + +L + ++ +I I ++ F N+P+P++ ++PL+ T L+V Sbjct: 60 RWVKLFREEVRKVLPKINMVSKESIYITRFNNFMFNIPMPSSYTTFTMRPLKETALLVID 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LVF + +FGG + P KVEGREFT E VI + +ALE + + A+ P++VE Sbjct: 120 SRLVFTVISVMFGGPAK-PFKVEGREFTKLETYVIKDFIDIALESLQEVFSAVYPVDVEK 178 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 E+ IT S N+ V+ + V+I C P M P++E++ + E Sbjct: 179 RSIELNPALARIT-SGNEKVIISECIVDIDGFEAPIYFCFPHGMFLPIKEIIYS---EFQ 234 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD--VLPIEKPDRIIAHVD 297 D W+ + + + +E+ + + +L+ G +L IEK + + Sbjct: 235 GEIDPVWKRRVNEILLQTNVEVALELPKQTYLMRDVLQWKEGMELILDIEKEEDAYLRIS 294 Query: 298 GVPVLTSQYGTLNGQYALRIEH 319 + G + +YA +++ Sbjct: 295 DKYKFRCKVGKIKEKYAALLKN 316 >UniRef50_A6DWS9 Flagellar switch protein FliM n=1 Tax=Roseovarius sp. TM1035 RepID=A6DWS9_9RHOB Length = 325 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 75/319 (23%), Positives = 135/319 (42%), Gaps = 6/319 (1%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS E+ AL++G +++ E T ++ Y + + L ++NERF R Sbjct: 12 LSSNEVAALVDGLLDMEKEQTHGTES---VKRYKFGSDNLSIMGDYHGLRMVNERFCRLA 68 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R LR P I+ ++ + + L +L + LR L++ P+ V + Sbjct: 69 RPVFLPFLRMHPRISAFPPEVKSFSHYCDELENFVSLTTARVDALRSNQLIMLPPNFVSL 128 Query: 126 AVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQ 185 + +GG+ EFT +E RVI + K AW+ + PL+ E Sbjct: 129 LTNAYYGGN-IAYLPGGRAEFTASETRVIEIVTKGIYRALEAAWRDLIPLDFANPVHEDN 187 Query: 186 VKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244 ++F S + VV F +++ ++ P ++P+ L + + +D Sbjct: 188 LQFATFVES-EEKVVCCSFIIQLPEADPATLDLIYPLQALKPIAARLRSRMQSDQVADDL 246 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTS 304 WR L V L + A A+ ++ +S + L PG V+P++ R V+G P+ + Sbjct: 247 RWRSRLREAVMAVPLNVTARLAEPNVPISALTGLRPGRVVPVDLTLRPQLLVEGTPLFDA 306 Query: 305 QYGTLNGQYALRIEHLINP 323 + G NG+ AL + I P Sbjct: 307 EPGAQNGRAALSLTRRIEP 325 >UniRef50_D2S983 Flagellar motor switch protein FliM n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S983_9ACTO Length = 321 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 6/296 (2%) Query: 25 PTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAI 84 S + R YD ++ RE ++ L+I E FAR L +LR + + I Sbjct: 13 APTGRSRRGEPRTYDFRRPTKLSREHVRVLQIAQEAFARQTTTVLTTMLRAGARLELLGI 72 Query: 85 RIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGR 144 Y ++ +LP P L ++PL G G++ + + AVD++ GG G R Sbjct: 73 EQHSYDDYVASLPDPCFLATFTIEPLAGKGVLAYPLDIAMAAVDHMLGGSGS--ADQPDR 130 Query: 145 EFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPF 204 T E + N +L L + ++ I L+ E E + S +D V+ + Sbjct: 131 PMTVMETAITNHLLGRLLSELAGSFSHIIELQPELSEIEYNPQLAQ-AASGSDTVMVASY 189 Query: 205 HVEIGNLTGEFNICLPFSMIE-PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVA 263 + IG+ +GE + LPFS + PL E+++ + + + L ++ +++ Sbjct: 190 TIGIGSRSGEATLVLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLTQVPVDVGV 249 Query: 264 NFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRI 317 FA + + +L L GDVL + P + + V + + A I Sbjct: 250 RFAPLEVSSEDLLSLAVGDVLLLRHPQDAPLEVTTNEVTFAYAIASNHRRRLAAAI 305 >UniRef50_Q4JMS1 Predicted flagellar motor switch protein n=2 Tax=Bacteria RepID=Q4JMS1_9BACT Length = 321 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 72/322 (22%), Positives = 144/322 (44%), Gaps = 4/322 (1%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 LS E++AL++G + P+ + G+ +RP+ + + AL IINERF Sbjct: 3 STRKLSSDEVNALIDGLGAETNAPSGIMDGDE-VRPFQFGSDDLSLLGDYHALRIINERF 61 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 AR R +LR P I+ ++ + E+ + +LN+ ++ LRG L V +P+ Sbjct: 62 ARLARSVFLPMLRIQPRISSFPPEVKTFDEYTAGIENFMSLNISRIEELRGNMLSVMTPN 121 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 + + ++ +GG + EFT TE+R+I + E AW+ + P+++ Y Sbjct: 122 FISVLTNSYYGGK-ITALPSKKSEFTATEERIIELVTDGLNETLQVAWRDLMPIKITYQN 180 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELLVNPPLENSR 240 E+ +F + + V+ F V++ + F+I P ++P+ L + + Sbjct: 181 REINPQFASFVDGA-EFVIICSFVVQLPDTDAASFDIIYPLQTLKPIAAQLRSRLQADVA 239 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 ++ WR+ + R V + L + A + + ++ + GD PI + + +D Sbjct: 240 EDNHTWREKMERAVLNIPLPVTARLGQPVVSMYNLINMQVGDTFPITIGEGVEVRIDTED 299 Query: 301 VLTSQYGTLNGQYALRIEHLIN 322 G + G A+ ++ + Sbjct: 300 AFIGDLGDVGGNAAVNLKSRLK 321 >UniRef50_C1A553 Flagellar motor switch protein FliM n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A553_GEMAT Length = 331 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 134/329 (40%), Gaps = 12/329 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M LSQ +ID LL G S +A + D++ YD RV +ERL+ LE + ER Sbjct: 1 MTSETLSQTDIDRLLGGASRGNAAASAGL----DVQVYDFRRPHRVSKERLRTLEAMYER 56 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 + F L + +R ++ + ++ + EF +LP+P + + + G++ P Sbjct: 57 LVKGFEAWLISRVRGQIEVRLQSVEQFSFGEFTLSLPMPCSSYIFDIAGTGQKGVIDVGP 116 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 VD LFGG+G R T E+ + + + W+ +++ Sbjct: 117 EFSTYIVDRLFGGEGTGSALT--RALTPIERMAVRNVADKITGLLQEIWQDHVAMDLNIT 174 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP---LE 237 E + + D V+ V G+++ +CLPFS+++ L Sbjct: 175 GFESSPEILQVVNR-EDPVLVANVEVNTGSVSSLLLLCLPFSVLDKFFTSNGQQRLALLN 233 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP--IEKPDRIIAH 295 + E + R ++ +++ L A D L + + ++ G V+P I K R++ Sbjct: 234 TNEQEREATRQRSEAALRATKVPLTARLPDFQLSMRDLAQITEGSVIPTAIPKDARVLIR 293 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPI 324 G +NG A+RI + + Sbjct: 294 AGTQERFIGHAGRVNGNLAVRIVDALPSV 322 >UniRef50_C8WBT4 Surface presentation of antigens (SPOA) protein n=3 Tax=Zymomonas mobilis RepID=C8WBT4_ZYMMN Length = 332 Score = 204 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 134/321 (41%), Gaps = 7/321 (2%) Query: 6 LSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHF 65 LS AE+DALL E + + + R+ LE I E+ AR Sbjct: 17 LSGAEMDALLAELGGDDIEEESPQEKTEFV----FGQETLNPIVRMAGLERIAEKLARRL 72 Query: 66 RMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFI 125 R+ + R +TV + I + ++ R+LP +++L L PL+G ++V P + Sbjct: 73 RLIIEPFARARTQVTVDGVDIHHFEKWRRDLPEFVSISLYRLAPLKGGAMIVMDPQFITG 132 Query: 126 AVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQ 185 VD +GG G +EFT E+R++ R+ + ++W + L+ +++ E Sbjct: 133 LVDAFYGGTGIVTPSRA-KEFTPAEERLLVRLSDTIADSVVESWSDVVQLQSQFLSRETN 191 Query: 186 VKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244 + + + ++ VV F + G +I P + + P L +++ D+ Sbjct: 192 GAYVTMIRN-DEAVVVQRFTIVPGNGRAARISIVYPRATLRPFEMHLDTKVHDDAGPADE 250 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTS 304 NW + + + A + + Q+ L G+V+PIE P+++ + Sbjct: 251 NWTKRMRLAASAIPIPIKTILARPQITMGQLKNLKVGEVIPIEMPEQLPLIAGTKKIAYG 310 Query: 305 QYGTLNGQYALRIEHLINPIL 325 G +G+ AL IE L Sbjct: 311 SIGDRDGKTALLIEKLEEEPE 331 >UniRef50_Q0EZ62 Flagellar motor switch protein FliM n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ62_9PROT Length = 330 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 131/332 (39%), Gaps = 13/332 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPT-----ASVSGESDIRPYDPNTQRRVVRERLQALE 55 M + IL+ EI+AL+ + + V + Y N ER Sbjct: 1 MSEPILAPEEIEALMAEVAPAEQTDAMFASLPPVVQPEHVEVYRFNVNDEDSPERYPMFV 60 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 + ER F L +R + V ++ Y + ++ P + G L Sbjct: 61 NLQERLIEMFDEQWHELFKRDVSVQVSSLESLFYKDIV-SVDAPQVYFVFEADGY-GRML 118 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 V F +L+ VD + GGDG + + E R+ R+ + D W+ + PL Sbjct: 119 VSFDTALIVAFVDAMLGGDGD--ADDNPQTLSAVELRLSERIADKISKTLGDLWQPVYPL 176 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNP 234 + + + +F +T + + +T F +++ + L G+ I P S +EP+ ++L Sbjct: 177 DFSLHKLDYDPQFLAVTGA-MEKCFSTFFDIKLNDELNGQMGIYYPRSFLEPMLDVLRVT 235 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRI 292 + S + D W + L++++ + L + + LK+ PGD LPI D Sbjct: 236 VTDESGDTDMEWTNGLMQRLSQTPAALRFELGRCQIDIGAFLKMMPGDFLPISTRANDPC 295 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 +D +P+ + G NG A I + P Sbjct: 296 SLWIDEIPLFQATPGEKNGGLAAEITEPVQPG 327 >UniRef50_B2V6S5 Flagellar motor switch protein FliM n=2 Tax=Sulfurihydrogenibium RepID=B2V6S5_SULSY Length = 322 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 78/328 (23%), Positives = 148/328 (45%), Gaps = 12/328 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D LSQ EIDAL+ G +A+ + + +D N ++ + Q LE++ E+ Sbjct: 1 MSD-FLSQDEIDALIGGGKS-----SATAEEKIKEKLFDFNRLEKIQKGGFQGLEVLFEK 54 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 + + FR + ++ G I + +F +P+P + + ++KPL+ + L++ Sbjct: 55 WVKIFREEIRTEFPVVNMVSKGKIVTMRFGDFIGKIPLPASYTIFNMKPLKDSSLLIIDS 114 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 +VF V LFGG G P K+EGREFT E R+I +++ + L + WK + P+E+E Sbjct: 115 RVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDVYPIEIERK 173 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 E I S + V+ ++I L P + P++++L Sbjct: 174 SIEFNPILVRIV-SHAEKVIVAEIMIDIEGLEVPLTFAFPQMLFLPIKDILFTDTFG--S 230 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDG 298 WR L++++ L+L+ S+ + + L + G + + K + + V+ Sbjct: 231 EVSPEWRKELIKKLLKVNLKLILELDKFSVLVKEFLNYDVGTEIILNKKQSEELDLKVED 290 Query: 299 VPVLTSQYGTLNGQYALRIEHLINPILN 326 + G L+ ++A I +I + Sbjct: 291 KVKFKASLGKLDKKFAAMITKVIKENDD 318 >UniRef50_B6R823 Flagellar motor switch protein FliM n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R823_9RHOB Length = 321 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 128/314 (40%), Gaps = 4/314 (1%) Query: 20 EVKDEPTASVSGESDI-RPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPD 78 ++ + + P + +RL L ++ +R AR + L + +P Sbjct: 5 DLDVGDEVISPQNAKVDLPSRLLDAAGLGVDRLPMLHVVFDRMARQYIDTLRQMAATAPY 64 Query: 79 ITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP 138 + V ++ + + + ++H + L+ F + +F V+ L GGDG Sbjct: 65 LAVQSVSNERIGDALEQYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEE 124 Query: 139 TKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI 198 +E R T+ EQR+ RM + A A++AI ++ R E +++F N Sbjct: 125 PFLEDRSLTNVEQRLAYRMFEEAATALETAFEAIADTSLKVERLENRMEFAQTGRKSN-P 183 Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQ 258 V EI GE I +P S++ PLRE L D W ++VQ ++ Sbjct: 184 CVLAKMTAEIIGREGEIFIIIPQSVLNPLRENLTQVLSGEVAGRDTRWTKQFQQEVQRTE 243 Query: 259 LELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALR 316 ++L A + + L ++ + G VL + + + P+ + G + G Y +R Sbjct: 244 VKLTAILEEQRMTLEEVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSYTVR 303 Query: 317 IEHLINPILNSLNE 330 +E LI L++ Sbjct: 304 VEELIEQEGELLDD 317 >UniRef50_Q01VK1 Flagellar motor switch protein FliM n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VK1_SOLUE Length = 293 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 129/269 (47%), Gaps = 4/269 (1%) Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 ++A+ ++++ F R+ L LR + + ++ Y EF LP PT + + L P Sbjct: 1 MRAIHLLHDTFVRNLVSSLSAYLRSYLTVNLVSVEQLSYAEFLDGLPSPTCIVSLGLSPY 60 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK 170 G G++ +PSLVF ++ L GG G+ ++ R+ T EQR+++ + ++ L+ +AWK Sbjct: 61 DGNGVLELNPSLVFPILEMLLGGTGKSSATIQ-RDITEIEQRLLDGLFRIILQDLREAWK 119 Query: 171 AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 230 A+ ++ E + + +PN+ VV+ V IG G NI +P +I+ +R+ Sbjct: 120 AVTNVDFTIESMETEPQLL-HLLAPNEAVVSIGIEVRIGETVGMMNIAMPSIVIKMMRQK 178 Query: 231 LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP- 289 + + + ++R ++ + L + A +L + +L L G++L + P Sbjct: 179 FDQQWSVRKTHASEAEQFRVLRVLRQATLTVEALMEGPTLSVGDLLSLREGNLLTFDFPV 238 Query: 290 -DRIIAHVDGVPVLTSQYGTLNGQYALRI 317 I V+G T Q + + A +I Sbjct: 239 ERPIELVVNGACKFTGQVVSTGRKRACQI 267 >UniRef50_A9W0F0 Flagellar motor switch protein FliM n=7 Tax=Alphaproteobacteria RepID=A9W0F0_METEP Length = 344 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 112/283 (39%), Gaps = 3/283 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + +RL L ++ +R A +L + ++ + + EF + + Sbjct: 56 LSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLDAYDANAVVGIF 115 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 G LV ++ V+ LFG DG P + R F+ E R+ + + + Sbjct: 116 QAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIAQMVFEQVGKAL 175 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 ++ ++ R E +++F I N V F ++ N GE + +P +++ Sbjct: 176 ESSFGLVSQTAFRLERMETRMEFAVIGRRSNKAV-QAKFLLQALNRGGEMFLIIPQTVLN 234 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 PLR L S D W + + +VQ + + L A + L L +I L G VL Sbjct: 235 PLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLT 294 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 ++ RI + P+ + G G Y LR+E INP Sbjct: 295 LDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKE 337 >UniRef50_C7R0I8 Flagellar motor switch protein FliM n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0I8_JONDD Length = 308 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 112/305 (36%), Gaps = 6/305 (1%) Query: 19 SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPD 78 D TA + YD + RE + +E+ E FAR + L + LR Sbjct: 1 MTASDTSTARRHRKGPPERYDFRRPMTIAREHARIVEMACETFARQWATQLTSRLRVMAS 60 Query: 79 ITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP 138 I + + + Y E+ L T L L R T L+ + + +D L GG G Sbjct: 61 IELDKLEMVTYDEYIATLDPHTTLVLFTADETRSTALLQIPSNTTMLWLDYLLGGPGLER 120 Query: 139 TKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI 198 + RE T E + +L +L A+ +I P+ + + +F + ++ Sbjct: 121 QE-NPRELTEIETALFRSLLDSSLADMRYAFSSITPMNPKIRGLQYNPQFVQAVPA-SEA 178 Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRE--LLVNPPLENSRNEDQNWRDNLVRQVQH 256 V+ + + +G+ + + + P R E + + L + Sbjct: 179 VLVANYSLTVGDRVSAATMMFAADALLNPLKVGEGEADPSAAQREEQRVSFERLRLSMND 238 Query: 257 SQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYA 314 +++ F I++R I+ + GDV+ + + V+G + G Q A Sbjct: 239 VPVDVGVRFNSITVRPRDIIDMAVGDVIELRHAASKPLRIVVEGRTIGHGVPGNNGKQLA 298 Query: 315 LRIEH 319 +++ Sbjct: 299 VKVTD 303 >UniRef50_Q3A5D9 Flagellar biosynthesis protein, component of motor switch n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5D9_PELCD Length = 331 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 8/327 (2%) Query: 3 DSILSQAEIDALLNGDSEVK-----DEPTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 + ILS+ EI LL+ + + +EP + +I + + +++ +++ Sbjct: 2 ERILSKEEIAELLSAVHDGEIPLRDEEPEPPAEVKREISSLNLVALQGPRHCKIENFDLV 61 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV 117 + ARH + L N ++RS + +++ Y F + L L +I L PLR G+ + Sbjct: 62 LDTLARHLGISLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRLDPLRWRGVFI 121 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 F L F +++L GG + GR T E V+ + A + + + +E Sbjct: 122 FKEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTFAPLEKIES 181 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLE 237 V+ E + NI + V+ F V NL E + LP +M++PL+E + Sbjct: 182 SLVKIESSTRLINIVPG-DASVLAAHFVVTGNNLEDEIVLVLPMAMLDPLKEKMREGSAV 240 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAH 295 S ++D+ W+ L ++++ ++L A A ++L + IL GD+L + + Sbjct: 241 FSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQVR 300 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLIN 322 G P + GT G+ A+RI IN Sbjct: 301 AAGQPKFQAIAGTHQGKKAVRISGRIN 327 >UniRef50_A5FX59 Flagellar motor switch protein FliM n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FX59_ACICJ Length = 337 Score = 199 bits (507), Expect = 9e-50, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 132/325 (40%), Gaps = 7/325 (2%) Query: 6 LSQAEIDALLNGDSEVKDEP-TASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARH 64 L+Q EID++L+G ++D+ E + ERL E++ ER +R Sbjct: 16 LAQEEIDSILSGGGALEDDALQPEPEAEQEASRLLYGRAD--SYERLPMAEVVFERLSRI 73 Query: 65 FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVF 124 L NL + + ++ + + + + + L + + GL+ V Sbjct: 74 LAGSLRNLFQDNVEVRLTRLASRRLADSFAEIAPMALLGVFRAREWDNLGLIHVDAMTVS 133 Query: 125 IAVDNLFGGDGRFPTK-VEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 + L GG + T + + R++++ L +++ I + ++ R+E Sbjct: 134 NLTEILLGGRRVAAATGQLPKPVTSISRNLTERLIRVVLHDLRNSFAPICDVTFDFERTE 193 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNED 243 +F I + + + + +I LPF+ +EP+RELL+ + D Sbjct: 194 TDPRFATIGRNSG-VALTARLSLHSAGRNCMIDIILPFATLEPVRELLLQQFMGEKFGRD 252 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPV 301 W +L ++ H+ +EL A + +++L ++ L GD++PI + + V + Sbjct: 253 SIWESHLAEELWHTDIELEAVLDEQTMKLGAVMDLRVGDIIPINAPRGSDVTLRCGSVDL 312 Query: 302 LTSQYGTLNGQYALRIEHLINPILN 326 + G +G+ A I I+ Sbjct: 313 FAGRLGVRHGRLAAEIRGWISRERE 337 >UniRef50_A1SEN6 Flagellar motor switch protein FliM n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN6_NOCSJ Length = 335 Score = 199 bits (507), Expect = 9e-50, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 115/287 (40%), Gaps = 7/287 (2%) Query: 35 IRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 +PYD ++ RE + L++ + F R + LR +++ +I + Y E+ Sbjct: 44 PQPYDFRRPIQLSREHSRMLQLAFDDFCRQATTVFTSSLRTVCGVSLASIEQRTYAEYID 103 Query: 95 NLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVI 154 +L T L +PL G+ V VD++ GG GR + R T E V Sbjct: 104 SLDASTYLTSFSAEPLFDRGVFEIPLLAVMTCVDHMLGGPGRL--EQPERPLTEIEAGVA 161 Query: 155 NRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGE 214 + M++ L + +I E E +F + + +D++V + I + T Sbjct: 162 SGMIERLLGELRYSMASIVAFEPVVKGVEYSPQFVQVAGA-SDVMVAASLELRINDRTFR 220 Query: 215 FNICLPFSMIEP--LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRL 272 +C+PFS + P LR P E R + L Q Q +E+ + +L Sbjct: 221 MTMCMPFSSLLPHLLRAAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSP 280 Query: 273 SQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRI 317 ++ L PGD L + P + VDG + GT + A I Sbjct: 281 MELAALRPGDALRLRHPAAAPLEVVVDGTCFAHATPGTSGFRLAALI 327 >UniRef50_C0C1P2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1P2_9CLOT Length = 336 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 144/333 (43%), Gaps = 11/333 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGES-DIRPYDPNTQRRVVRERLQALEIINE 59 M + +LSQ++IDALLN + + YD + ++ +++L+ L+ I + Sbjct: 1 MAE-VLSQSQIDALLNSMMNSDAAEEPKEEKPEKNWKKYDFKSPKKFTKDKLKLLKGIYD 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK-PLRGT---GL 115 + R L +LR + ++ V ++ Q Y EF+ L + +++LK P + Sbjct: 60 NYGRLASSRLNGVLRTACEMEVLSVEEQRYFEFSNILSENDVMMMLNLKLPDESKNPPMM 119 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + S L+ +D + GG G ++ E + +++K L+ DAW + Sbjct: 120 IHISQKLMVNMIDRMLGGTGDDDDVDSSYTYSEIESALYKKVMKYLLDITRDAWGNYIKI 179 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + R E S ++ V +V++ N+ G IC+P +++ + ++ Sbjct: 180 NLGDQRLEENPGLFQ-EISLDEPVAIVLLNVKMQNIDGRITICIPGNLLMNIFNIIDKRK 238 Query: 236 L--ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DR 291 N R+ ++ ++ S +E+ A A+ L + ++ L GDV+ + K Sbjct: 239 HVDGLYDEGIANSRELIMTRLNRSTMEIKAELAEAQLSMKEVCGLKVGDVIDLNKSRESD 298 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 ++ +V+ P + G N A++I+ I Sbjct: 299 VVLYVEEQPWFRGKLGAHNKNAAVKIKQCIQEE 331 >UniRef50_B4U6V4 Flagellar motor switch protein FliM n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6V4_HYDS0 Length = 321 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 153/324 (47%), Gaps = 10/324 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + +L Q E+D LL + ++ S+ E +D + R+ + LEII E+ Sbjct: 1 MAEQVLGQEEVDLLLKSLGKEEEVEEKSLEYEK----FDIDDLERISLGTIAGLEIILEK 56 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 ++R R+ L +L+ +I + + + LPVP+ +N+ ++ L+GT ++ P Sbjct: 57 WSRLSRVKLSSLIVAINNIYKAETSLIRFEDLITKLPVPSCINMFNITGLKGTHFLILDP 116 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 +++ V +FGG + P ++EG+EFT E ++I +++ L L + ++W +I EV Y+ Sbjct: 117 RMIYSIVSVIFGGSAK-PYRIEGKEFTKLELKIIKKVVDLLLSAFQESWNSILSGEVMYL 175 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 +E+ S ++ + ++EI + + + S +EP+ + L N + Sbjct: 176 ETEVNPALIAPMNSKKEMFIQAHINIEIDGIDYPIFLAIQNSSLEPVVDRLRNVSEVSDY 235 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDG 298 + + NL +++ + L + IL+ GD + + + +++G Sbjct: 236 VDYDSINKNL---IKNLTVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANRPVKVNIEG 292 Query: 299 VPVLTSQYGTLNGQYALRIEHLIN 322 + + G N + A++I L++ Sbjct: 293 MLKMYGVLGRSNSKKAVKILKLLD 316 >UniRef50_A8UVU1 Flagellar motor switch protein FliM n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVU1_9AQUI Length = 322 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 84/326 (25%), Positives = 161/326 (49%), Gaps = 15/326 (4%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M + LSQ EID LL + ++E V +P+D N R+ RL LE + Sbjct: 1 MAEEDFLSQDEIDMLLQSLGKEEEEAEEEV----KYKPFDINELERISPTRLIKLEQVIN 56 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R+ L ++ +I++ I+ + +F +P+P + +++++ L G +V Sbjct: 57 RWIASATAELRGIIFNLDNISLSEIKTEKISDFVLKIPLPAAIAVLNVEALNGRLYMVLD 116 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW-KAINPLEVE 178 L++ + +FGG + P KVEG+ FT EQ++IN ++++ + + AW + I EV+ Sbjct: 117 TRLIYTIISIIFGGPAQ-PYKVEGKSFTKFEQKIINNLVEVLVRHLNTAWVELIREGEVQ 175 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 +V E + IT S N+IV+ VEI G + +P I+P++++L Sbjct: 176 FVGIEDNPRRL-ITISRNEIVIVITLEVEIEGFKGYVYLAIPMKTIDPIKDILRT----- 229 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHV 296 + E ++RD ++ + + + L A + + + ++L++ GD +P++ D I V Sbjct: 230 ADTESGDFRDVILSNLMGTPVLLEAILPTLVMNVHELLEMKEGDFIPLDPRATDSITVKV 289 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLIN 322 GVP+ G G+ A++I+ + Sbjct: 290 AGVPMFKGILGESAGRKAVKIKSFVE 315 >UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R9W6_AMMDK Length = 360 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 63/367 (17%), Positives = 122/367 (33%), Gaps = 47/367 (12%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 + LSQ EIDALL G DE + + + + E AL I Sbjct: 4 EHFLSQEEIDALLKGFGASPDEGSGTAKENPE-----------LTEEEKDALGEIGNIAM 52 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL-NLIHLKPLRGTGLVVFSPS 121 L +L R IT +++ E ++ VP + ++ + + L G L+V Sbjct: 53 GAAATALSEILGRRVTITSPHVQVTTKEELLKSFTVPYLIVSVPYTEGLEGLSLLVVKVE 112 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 + D + GG+G+ + E + +N+M+ A +D + + VR Sbjct: 113 DASVIADLMMGGEGKRSPTLGEIEISAV-AEAMNQMMGAAATSLADIYHRTVGIAPPQVR 171 Query: 182 SEM-QVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRELLVNPPLENS 239 + + D + F + I +L E L S + LL Sbjct: 172 IFSKEGEAATNDLGVEDPIAVISFRMTIEDLLDTEIMRVLSVSTAKEEASLLWQGVYGEE 231 Query: 240 RNEDQNWRDN------------------------------LVRQVQHSQLELVANFADIS 269 ++ + + + + L++ Sbjct: 232 EKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRLELILDIPLKVSVVLGRTR 291 Query: 270 LRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 + +IL L PG +L ++ + + V+GV V + + + +RI ++ P Sbjct: 292 RPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEENFGVRITSIVTPQERL 351 Query: 328 LNEEQPK 334 +P+ Sbjct: 352 RYLARPR 358 >UniRef50_B2IJZ9 Flagellar motor switch protein FliM n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJZ9_BEII9 Length = 313 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 116/294 (39%), Gaps = 3/294 (1%) Query: 37 PYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL 96 P V +R+ L +I +R L TV +I + + Sbjct: 15 PERLLDTAGVSIDRMPMLHVIFDRMVAQCSESLRQYSAAPAVFTVSSIGTERIGDILDAY 74 Query: 97 PVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINR 156 T + +IH++ LV F + + ++ +GGDG P +E R ++ E ++ Sbjct: 75 ENNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLSNIEIKLAQT 134 Query: 157 MLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFN 216 + L + ++ I+ ++ R E ++ F I N T ++ I GE Sbjct: 135 IFDLLPKALQTSFSTISETVFKFERLETKLDFAVIAPR-NTFGFITRINLRILGRHGEMF 193 Query: 217 ICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL 276 + +P S + +R+ L ++ D W + ++ +++E+ A D L Sbjct: 194 VVIPQSSLNSIRQELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIEDSHFVLGDFT 253 Query: 277 KLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 +L G VLP++ R + P+ Q G +G Y LR+E I+ + + Sbjct: 254 ELKIGQVLPLQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQEKDFI 307 >UniRef50_B1M7I2 Flagellar motor switch protein FliM n=4 Tax=Alphaproteobacteria RepID=B1M7I2_METRJ Length = 309 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 3/291 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + ERL L +I +R A L + ++ + Q + + + Sbjct: 20 LSLERLPMLHVILDRVATFCADQLRHFAASPVYFSLSNVESQRFGDILEPYESNAIAGIF 79 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 LV F +F V+ L G DG P E R F++ E R+ R+ + Sbjct: 80 QAPEWDSHILVGFDRDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIAQRLFEQVGRAV 139 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 A+ + + R+E+++ F I N V F ++ N GE I +P S++ Sbjct: 140 QSAFALVADTPFKLERTELRMDFAVIGRRNNQAVA-AKFLLQALNRGGEMFIVIPQSVLN 198 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 P+R+ L + + D W + +VQ + + L A + L L +I L G VL Sbjct: 199 PMRQSLARILVGETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLE 258 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 + R+ + + G +G LR++H I+ +++ + Sbjct: 259 LRATPRSRVKLVGNDRDLFWCDVGQEDGAIVLRVDHFIDQDQEFIDDVLAR 309 >UniRef50_D1BCL9 Flagellar motor switch protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCL9_SANKS Length = 315 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 120/299 (40%), Gaps = 6/299 (2%) Query: 25 PTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAI 84 P + YD + RE +A E+ E FAR + L + LR + + + Sbjct: 13 PAVRRQRPAQPEAYDFRRPMTLAREHGRAFEMAFETFARQWGTQLTSRLRVMVGVGLDGV 72 Query: 85 RIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGR 144 + Y E+ R LP T + L ++ R T ++ + + VD + GG G ++ R Sbjct: 73 EMVSYDEYVRRLPNHTTMVLCSIETTRSTAVLQVASETSMLWVDYVLGGPGLVREELP-R 131 Query: 145 EFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPF 204 E T E +I ML AL A+ A+ PL+V + +F + ++ V+ F Sbjct: 132 ELTEIETTLITDMLSGALADLRYAFVAVVPLDVRVKAIQYNPQFVQAAPA-SEAVIVATF 190 Query: 205 HVEIGNLTGEFNICLPFSM-IEPLRELL-VNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 + + + +P + + P+R V ++ E D L R + +++ Sbjct: 191 TLTVAERPTTATLMIPADVLLAPMRAGEGVVQRSKDELAEAAAASDRLHRTMSTVPVDVH 250 Query: 263 ANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 +++ ++ L G+V+ + P + VDG+ + G Q A +I Sbjct: 251 VRMRPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHGVAGNNGRQLACKIVD 309 >UniRef50_C6WJP9 Flagellar motor switch protein FliM n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP9_ACTMD Length = 320 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 124/317 (39%), Gaps = 8/317 (2%) Query: 14 LLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLL 73 LL S V+ D +D ++ RE L+ L++ E F+ L + L Sbjct: 6 LLTSSSGGASRSPGLVANPGDPEVFDFTRPVKLPRELLRVLQLCYETFSHRMATLLTSTL 65 Query: 74 RRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGG 133 R + +I Y E L PT L + L+PL GT L+ + S ++D+L GG Sbjct: 66 RVVCHAELISIEQLSYAEHMAELANPTLLAPVVLEPLPGTALLEMTLSTAMTSMDHLLGG 125 Query: 134 DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITT 193 G R + E ++ +L ALE +++ + E E + T+ Sbjct: 126 KG---GPQPARPLSDIETPLLRDLLDQALEQLRVGMESVADVRPELEGLEYNPQLVQ-TS 181 Query: 194 SPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN--EDQNWRDNLV 251 +P D VV F + +G G+ ++C+P I P + ++ + R+ + Sbjct: 182 TPTDAVVVGYFELNVGEEQGQVSLCIPLQTILPSLRSYRDKVAVSASERATREAARNAIT 241 Query: 252 RQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTL 309 +Q+ + + F + L S ++ L PGDV+P+ + + G + Sbjct: 242 AGLQNVPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFANAVATKR 301 Query: 310 NGQYALRIEHLINPILN 326 + A + + N Sbjct: 302 GTRLACLVVAGADSEEN 318 >UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G689_ABIDE Length = 370 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 63/380 (16%), Positives = 122/380 (32%), Gaps = 71/380 (18%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQ EI+ALL G E ++ P + E A+ I+ Sbjct: 2 DGMLSQEEINALLGGMGEDSGSDSSDTQTLGGADP--------LSGEEKDAIGEISNISM 53 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPS 121 L LL + +IT + I + + +++ P + + +++ L G +++ Sbjct: 54 GTAATTLSTLLNQRVNITTPNVSIANWDDISQSYDRPCVFIQISYIEGLDGNNILILREK 113 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWK---AINP 174 V I D + GG G T V+ E T +N+M+ A S + I+P Sbjct: 114 DVKIITDLMMGGSG---TDVDATELTELHLSAICEAMNQMMGSAATSISSVLEKKVDISP 170 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVN 233 + E + + V F +EIG+ + E P + L ++ Sbjct: 171 PTASLIDLEGTIDEEGLGDFLKGQFVKVAFRLEIGSLIDSELMQLYPIDFAKELYSKFMS 230 Query: 234 -------------------------------------------------PPLENSRNEDQ 244 N + Sbjct: 231 STETEQPAPAAQQPAAPTPQPVAQQPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINP 290 Query: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVL 302 + + + LE+ + + +IL +PG ++ + K + I V+G V Sbjct: 291 LMQQENIGLIMDVPLEVTVELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVA 350 Query: 303 TSQYGTLNGQYALRIEHLIN 322 + + + +RI ++ Sbjct: 351 KGEVVVIEDNFGIRITEIVK 370 >UniRef50_B8HEJ5 Surface presentation of antigens (SPOA) protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ5_ARTCA Length = 298 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 120/299 (40%), Gaps = 11/299 (3%) Query: 21 VKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDIT 80 + + + + YD + R+ + LE+ E FAR + L +R T Sbjct: 1 MSELEDRQAPRQRSVDVYDFRRPTTLPRQHSRVLEVAFETFARQWGTQLTAKVRVKSSAT 60 Query: 81 VGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTK 140 + + +Q Y E+A +LP T++ L + ++ F + + + GG G Sbjct: 61 LEQLSMQSYDEYAASLPSVTSMVLCRIDGSESRLVLQFPATAALAWISRMLGGSGD--AD 118 Query: 141 VEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVV 200 V R+FT E ++ RM++ +LE + ++ + + +F +P ++++ Sbjct: 119 VPERKFTQIEHALVRRMVEDSLEDLKYSLGSLLAAPLAMDVVQYNSQFAQ-AAAPGELMI 177 Query: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLE 260 F V++G L + +P ++ P N + + QV ++ Sbjct: 178 VATFSVQVGELPSAATLAIPADVLLPGLG------AVNPTAPTADAGALVRAQVAQVPVD 231 Query: 261 LVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRI 317 + A S+ +QIL L GDVLP+ P+ V+G + T+ + A I Sbjct: 232 VAVQLARTSVTPAQILGLAVGDVLPLPHPENSPFDVTVNGTRLATAAPARNGSRAAAVI 290 >UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VT98_CLOBO Length = 394 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 55/384 (14%), Positives = 125/384 (32%), Gaps = 68/384 (17%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPN---TQRRVVRERLQALEIINE 59 + LSQ EID+LLNGD + + S E +++ + ++ ++ + L I Sbjct: 5 NGFLSQDEIDSLLNGDENNDVQENSDESTEENVKDVENAQESSEDKITDIEMDLLGEIGN 64 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVF 118 L ++ +IT + + VP L + + + G L+V Sbjct: 65 ISMGSASTALSTIIGNVVNITTPQVSSTTLEKLRNTFEVPNIALEVKYTSGIVGGNLLVM 124 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINP 174 + + + GGDGR K E T E+ +N+M+ A + + Sbjct: 125 KIPDAAVIANLMMGGDGRIEEKS---ELTEIEESAVSEAMNQMIGSAATSMATMFSREVN 181 Query: 175 LEVEYVRS--EMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELL 231 + + + + T ND ++ F + IG+ + P + + ++ Sbjct: 182 ISPPVYKIWKDTSMPLCE-TIKENDDIIKVSFKLTIGDLVDSNIMQIFPIKTAKKIVSIM 240 Query: 232 VNPPLENS---------------------------------------------------R 240 + + + Sbjct: 241 MGQEEKGEAVEQSSNKTQQINKMQNQETSSNSQVEPKPVETYTKSQPQVNIQKASFAPLQ 300 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDG 298 + N + + LE+ + IL L G ++ ++K + + +V+G Sbjct: 301 ESNINGAPQNIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNG 360 Query: 299 VPVLTSQYGTLNGQYALRIEHLIN 322 + + ++ + +RI ++++ Sbjct: 361 KKIAYGEVVVVDENFGVRIVNIVS 384 >UniRef50_A3U1I7 Flagellar motor switch protein FliM n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U1I7_9RHOB Length = 317 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 4/288 (1%) Query: 45 RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNL 104 + ERL LE+I ERF+ + + + + ++ AI P + ++P P +++ Sbjct: 27 KRSYERLPILEVILERFSLAVGPAIKHYVGAICESSIDAIDYLPTGDALESMPSPALISV 86 Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEG 164 I G +V PS + ++ FGG ++ R FT E+++ + +L L Sbjct: 87 IESPDWDGPFALVIDPSFLISTLEITFGGRMAGRSEWVPRSFTAIEKKIGTEVTQLMLNE 146 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMI 224 S+ + + +E E + + PN V HV + + G F I +PF+ + Sbjct: 147 LSETFGQLAQIEFTISHIETNAQ-AMVLAPPNTGCVRLRMHVTMDDRDGYFYIVMPFNAL 205 Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 +R +LV P S D++WR N+ + + + + A D + L ++L+ G VL Sbjct: 206 SNIRNMLVQPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVL 265 Query: 285 PI--EKPDRIIAHVDGVPVLTSQYG-TLNGQYALRIEHLINPILNSLN 329 + E + G + +Q G NG+ AL+I + + Sbjct: 266 DLGIEVDQPVSLICSGHEMYMAQTGKRKNGRMALKITEQLKDEEEMTD 313 >UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Thermotogaceae RepID=A5IJA7_THEP1 Length = 346 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 61/368 (16%), Positives = 121/368 (32%), Gaps = 60/368 (16%) Query: 1 MGDS-ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M + LSQ EID LL G + E + I Sbjct: 1 MTEKEFLSQEEIDKLLGGSDTGGV----------------------LTLEEKDMIGEIGN 38 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL-PVPTNLNLIHLKPLRGTGLVVF 118 L +L R ITV +R + + +++ +++ L G ++V Sbjct: 39 IAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYIEGLEGLNVLVL 98 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 + LV + D + GG G T+ +N+M+ A S+ + Sbjct: 99 NKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSELLGITINISPP 158 Query: 179 YVRS----EMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRELLVN 233 V + +F +T +P V F +EI L +F + +++ + E Sbjct: 159 KVEILNFDDPSTQFPPVTDNPEKDVAVVEFEIEIEGLPKSKFYQVISADLVKKMYEYFTK 218 Query: 234 PPLE---------------------------NSRNEDQNWRDNLVRQVQHSQLELVANFA 266 E S + + + L + Sbjct: 219 KQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLLDIPLRVTVELG 278 Query: 267 DISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 + L ++L++ PG ++ ++K + + V+G + + ++ + +RI +++P Sbjct: 279 RTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPK 338 Query: 325 --LNSLNE 330 L LNE Sbjct: 339 ERLELLNE 346 >UniRef50_Q6AJS9 Related to flagellar motor switch protein (FliM) n=1 Tax=Desulfotalea psychrophila RepID=Q6AJS9_DESPS Length = 323 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 140/325 (43%), Gaps = 9/325 (2%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVS----GESDIRPYDPNTQRRVVRERLQALEIIN 58 + ILS+ EI LL + K + ++ + ++ +II Sbjct: 2 EPILSKTEIAELLRAIRQGKISLDGGREVNSIDYEKVNLFELTPPVD-DKVKIPNFDIIM 60 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + FARH+ + L N L+R+ I + + + + P + ++ L PL+ GL++F Sbjct: 61 DSFARHYSILLSNQLQRTISIERIKLESFDFQDVFDKIAHPGAIGMLDLPPLQQGGLILF 120 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +PSL F V+ L G T R+ T E V+ ++ A G A+ + + Sbjct: 121 NPSLSFSLVERLLGASLDLETVCLNRDPTTIELNVLKVIIDHACLGLDKAFSPLVNMNSS 180 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 V+ + + + +IT P+D V+ F V +G +GE + +P + +E L E L L Sbjct: 181 LVKIDSKPRLMSIT-DPDDEVIACTFRVILGKDSGEILLLIPLAALEVLHEDL-QHLLRA 238 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHV 296 S W+ + +V+ ++ A + L + IL L GD+L + + + V Sbjct: 239 SAKRTTTWQGTIAAEVKKMTADITAQPGRLELSVGDILGLQVGDILEVDYDPSKPLKVLV 298 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLI 321 + P GT NG+ A+ + I Sbjct: 299 ENSPKFYGIPGTHNGKKAISLTERI 323 >UniRef50_A6W8L0 Flagellar motor switch protein FliM n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L0_KINRD Length = 314 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 125/305 (40%), Gaps = 12/305 (3%) Query: 19 SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPD 78 S + T PYD ++ R+ + LEI E F R + L + LR + Sbjct: 7 STAERTGTRRSRRRGVPVPYDFRRPTKLSRQHARVLEITYEGFCRQWATLLSSTLRTTVQ 66 Query: 79 ITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP 138 + + I+ Y E+A +LP+PT + + +PL G ++ + V ++ + GG G Sbjct: 67 VELDGIQQYSYDEYAASLPMPTVMAVFDPEPLVGAAVLHMDMAFVLSCIERMLGGTGHNA 126 Query: 139 TKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI 198 R+ T E + M++ L + + + L+ + + + D+ Sbjct: 127 --QPERQLTDIEAVLARGMVERTLVELASSLVTVTDLKPKLTAIDQNPA-FAQAAAATDV 183 Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQN----WRDNLVRQV 254 ++ + FH+E+ + G + +P ++PL L L + E+ RD L + Sbjct: 184 MIVSSFHLEVDGVAGTATLAMP---LDPLSTALTAAELRVASPEELRIRRLMRDRLDDHL 240 Query: 255 QHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQ 312 +H +E+ +R +IL L PGDVL + + + V ++ G+ + Sbjct: 241 EHIPVEVSVRMKAAQMRPDEILGLVPGDVLRLPHRADEPLEVVSSDAHVASAVAGSRGAK 300 Query: 313 YALRI 317 A I Sbjct: 301 LACLI 305 >UniRef50_B8DI83 Flagellar motor switch protein n=18 Tax=Listeria RepID=B8DI83_LISMH Length = 330 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 130/322 (40%), Gaps = 10/322 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKD-EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M D LSQ +IDALL+ SE K + + + PYD + + E L++L+ I Sbjct: 1 MSDK-LSQEQIDALLSQISEGKVVDESTEIGDFGRFHPYDFHKPEKFGAEHLESLKTIAS 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHE-FARNLPVPTNL-NLIHLK-PLRGTGLV 116 F + + +R + + +P + + +I L P G ++ Sbjct: 60 AFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELGQIII 119 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 + + + L GG+ + E R + E+ + +L+ E D++K+++P+ Sbjct: 120 ELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEALKDSFKSVHPIS 178 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 E V E +T SPND++ ++ I +PF +E + L N + Sbjct: 179 PEIVNIETNPALLRVT-SPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN-VV 236 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL--PIEKPDRIIA 294 E + ++ +N+ + +++ + E +I ++ KL GDVL D + Sbjct: 237 EYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRDTLKG 296 Query: 295 HVDGVPVLTSQYGTLNGQYALR 316 +V G Q A++ Sbjct: 297 YVTEKWKFECYMGKSGNQKAVK 318 >UniRef50_C5EFH3 Flagellar motor switch protein FliM n=3 Tax=Clostridiales RepID=C5EFH3_9FIRM Length = 296 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 127/296 (42%), Gaps = 14/296 (4%) Query: 35 IRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 I+ YD + ++ +ER+ +E + + FAR L LL+ +I++ I + Y EF+ Sbjct: 2 IKSYDFKSPKKFTKERMSTVENLYDSFARALAPYLTGLLQSYCEISINGIVEKRYQEFSN 61 Query: 95 NLPVPTNLNLIHLKPL-----RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHT 149 ++P + +I L P + L F ++ L GG G R+FT Sbjct: 62 SVPDHSLFGMITLSPANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYELT--RDFTDI 119 Query: 150 EQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG 209 E+ ++ +L E +AW ++ + ++ D+V+ V I Sbjct: 120 EKAILQYVLGKITEFLGEAWGQYLDVQASLTGLQTNPHLLQMSAQ-EDVVIQVELEVVID 178 Query: 210 NLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDN----LVRQVQHSQLELVANF 265 L+ N+ +P +E L + + +D+ + + + + + S++EL A Sbjct: 179 KLSARLNMVMPAPNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLESEVELRAIL 238 Query: 266 ADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 + +L IL+L PGDV+P+ K I +V+ V ++ G + A+ I + Sbjct: 239 HEFTLDAQDILQLTPGDVIPLNKKVDSGISIYVEDVACFEAKAGHTRLRKAVEISN 294 >UniRef50_Q21AD3 Flagellar motor switch protein FliM n=3 Tax=Bradyrhizobiaceae RepID=Q21AD3_RHOPB Length = 311 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 110/286 (38%), Gaps = 3/286 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + ER+ L +I ++ L ++ ++ + + + Sbjct: 22 ISVERMPMLHVIFDQMTNLCAEALRSMSPSQSYFSLSGVGSDRLSDIVDRYEGEAIAAVF 81 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 + + L+ F ++ ++ LFG DG P R F++ E V + + + Sbjct: 82 YAQAWDARVLIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVEMHVAQALFERFGKAL 141 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 ++ + + R E ++ + + N++ V ++ + GE I +P + + Sbjct: 142 QSSFSRASDVNFTLERVETRMDYLAVGR-LNNMAVCANILLQGLDRGGEMFIVIPHAALN 200 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 P+R+ L S + D NW L +++ +++ L A + L ++ + G V+ Sbjct: 201 PIRQALSQIVTGESASTDPNWSRQLHSEIKRTEVVLKAVLEERPFTLGEVAGFHVGQVIK 260 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 + + + + Q G LNG Y+L+++ + ++ Sbjct: 261 LNATPNTMVRLECNNQRLFWCQLGQLNGVYSLQVKESADQKREFID 306 >UniRef50_Q2CGI2 Possible flagellar motor switch protein FliM n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGI2_9RHOB Length = 316 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 119/301 (39%), Gaps = 5/301 (1%) Query: 23 DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVG 82 + ++ + ER+ LE++ +R+ + + D+T+ Sbjct: 2 NAHAPQPEDGAETVEEQIIRLSSLNFERMPMLEVVFDRYVMALASAMKSFSGMPFDVTLR 61 Query: 83 AIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGG-DGRFPTKV 141 + LP P+ L P G L+ SP L+F ++ + GG +GR Sbjct: 62 SFDYVTCGTALSGLPAPSLSALTTATPWSGNVLMTLSPDLLFSVLEVMLGGREGRGRQLW 121 Query: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVN 201 + R FT E+R R+ ++ L+ +S +++ ++ + E E + I S + V Sbjct: 122 KPRSFTAIERRFGGRLARMILDEFSQSFRQLSEVSFEIDSLESAPETIAIAPSGSPAVW- 180 Query: 202 TPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLEL 261 + +G G +P++ ++ +R +L P L D +WR +L +++ + + L Sbjct: 181 VTLDLTVGERGGALYFLIPYTALDTVRPVLNQPFLGGKIGGDTSWRKDLEEKIEDTTVTL 240 Query: 262 VANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDGVPVLTSQYGTLN-GQYALRIE 318 A+ + + + + L G + + + + Q G GQ ALR+ Sbjct: 241 TASLHRLRVPVQEALGWRKGQTIDLGISAEQPVDVVCGERRMFRGQMGRRATGQVALRLI 300 Query: 319 H 319 Sbjct: 301 E 301 >UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion protein n=2 Tax=Exiguobacterium RepID=B1YI92_EXIS2 Length = 376 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 60/380 (15%), Positives = 124/380 (32%), Gaps = 70/380 (18%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EIDALL G ++ ++ + ++ + AL + Sbjct: 1 MSD-MLSQDEIDALLRGTPSAEEPADTHLTDD----------LHQLDEMEIDALGEVGNI 49 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 + L LL + +IT +R+ E P+P L + + + +G +++ + Sbjct: 50 SLGNSATALSALLNQKVEITTPHVRMITMEELRSRYPIPHVALRVGYTEGFKGENVLILT 109 Query: 120 PSLVFIAVDNLFGGDG--RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 + + + GGDG ++E + Q +N+M+ A S + + Sbjct: 110 QRDASVIANLMMGGDGVVDESLEMEPIALSAV-QEAMNQMMGAAATSMSTVFSMRIDISP 168 Query: 178 EYVRSEMQVKFTNITTSPN--DIVVNTPFHVEIGN-LTGEFNI----------------- 217 V + I S + + +V F ++IG + + Sbjct: 169 PAVEIFDFSQEKTIVDSFSLWESMVIIEFDLKIGTLIDSKIVQLAPLDFSKQLIQKLFSA 228 Query: 218 ---------CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVR---------------- 252 P S EP+RE P + + Sbjct: 229 STTTTESAPIAPTSSQEPVREQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQFGQFSEVQQ 288 Query: 253 --------QVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVL 302 + L + + IL+L G ++ ++K + + V+ + Sbjct: 289 EGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIA 348 Query: 303 TSQYGTLNGQYALRIEHLIN 322 T + + + +RI ++N Sbjct: 349 TGEVVVIEENFGVRITEIVN 368 >UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I888_9CLOT Length = 370 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 50/382 (13%), Positives = 122/382 (31%), Gaps = 83/382 (21%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + LSQ EID+LLNG ++ + L I Sbjct: 3 MSNGFLSQEEIDSLLNGGADS-------------------VKPELISEIEKDLLGEIGNI 43 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL-NLIHLKPLRGTGLVVFS 119 L+ L+ + +IT +++ E P + ++ ++ + G +++ Sbjct: 44 SMGSASTALYQLINKQVNITTPKVKVTTLKEIKDGFEYPNIILDVEYVSGITGRNILIMQ 103 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTE----QRVINRMLKLALEGYSDAWKAINPL 175 + + + + GGDG+ V E + E Q +N+M+ A + + + Sbjct: 104 TTDAAVIANLMMGGDGQ----VNTSELSEIEVSAVQEAMNQMIGSAATSMATMFAREVNI 159 Query: 176 EVEYVRSEMQV-KFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVN 233 + + + + T ++ +V F + I L LP + + + +++ Sbjct: 160 SPPKSKIWKDMNENISETIPEDEPIVEVCFDLTIEGLLQSNMMQILPINTAKKIVSIMMG 219 Query: 234 PPLENSRNEDQNW----------------------------------------------- 246 E + D ++ Sbjct: 220 EDQEVANEIDDSYDSSDIYKEEYNIEEKPIINTVEERAVKNIVEKPVEVHGATFEPLSQG 279 Query: 247 ----RDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVP 300 + + LE+ + IL L+ G ++ ++K + + ++G Sbjct: 280 VVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVEVLINGKK 339 Query: 301 VLTSQYGTLNGQYALRIEHLIN 322 + + ++ + +RI +++ Sbjct: 340 IAYGEVVVVDENFGVRITSIVS 361 >UniRef50_C1F3H9 Putative flagellar motor switch protein FliM n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3H9_ACIC5 Length = 316 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 135/320 (42%), Gaps = 10/320 (3%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D L+Q +IDAL A ++++RPY+ + ++ RE+L+++ +N+ FA Sbjct: 2 DKSLAQEQIDALFKSAKAT--AQPAQPEADANVRPYNYSRAGQISREQLRSISSLNDLFA 59 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R+ + L L I + + P+ EF + + + L+PLR ++ + Sbjct: 60 RNLGINLGAWLGMQCRIQLVSAEQIPFEEFVMRGADLSFIASLRLEPLRAVAILQMELAP 119 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182 V +D L GG G+ E RE T E+ ++ +++L S AW++I L + Sbjct: 120 VPSMIDALLGGIGQPG---EVRELTSIEEAIVAHVVELICRELSSAWQSIG-LSFYFESR 175 Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242 +MQ + + + + F + + + +G +I LP + + L L + Sbjct: 176 QMQTQMARLLPIK-ERALCLSFEIRLPSASGLLHIALPAVVSNTVLRSL-RGDLHPQKEH 233 Query: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL--PIEKPDRIIAHVDGVP 300 + R + V+ + A + + ++ L G V+ P+ R V GVP Sbjct: 234 SEETRAKMRGLVKKVSVGTALQLAPARIPMRELEGLEAGQVVVFPVTAKTRPELLVAGVP 293 Query: 301 VLTSQYGTLNGQYALRIEHL 320 + + + A IE L Sbjct: 294 LFQAVPVRSGERRAAHIESL 313 >UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADB7_CARHZ Length = 347 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 55/357 (15%), Positives = 122/357 (34%), Gaps = 45/357 (12%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + LSQ EIDALL + P+ S + I D AL Sbjct: 1 MDNQFLSQEEIDALLRS----EPVPSESEGSGTGIILTD---------AEKDALGEAGNI 47 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPT-NLNLIHLKPLRGTGLVVFS 119 L L+ R IT + +Q EF + P + + + L G +++ Sbjct: 48 SMGSAATSLSQLVGRKVIITSPRVEVQKEKEFFASFREPYMVIEVEFTEGLSGKNVLIIK 107 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 + V + + GGDG ++ E + Q +N+M+ + S+ +K + Sbjct: 108 ENEVGVIASLMMGGDGTHSGEITELEQSAA-QEAMNQMIASSATALSEIFKRKINISPPR 166 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELL------- 231 + + VV F+++I + + + + + + + ++L Sbjct: 167 SKMINSRENDTYEPFGGHEVVVIYFNMQIEDLVDTDIMQVMEPATAKEVAQMLLAKVYGS 226 Query: 232 --------------------VNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLR 271 + +E + + D + + L++ Sbjct: 227 PETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTRRP 286 Query: 272 LSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + +IL PG ++ +++ + + V+G V + + + ++I +++P Sbjct: 287 IKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQILSPKER 343 >UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=Bacteria RepID=FLIY_BACSU Length = 378 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 62/386 (16%), Positives = 122/386 (31%), Gaps = 73/386 (18%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M ++ LSQ EIDALLNG DEP + + A+ I Sbjct: 1 MENNRLSQDEIDALLNGTGSTLDEPEIPEVDD-------------LSEMERDAIGEIGNI 47 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVFS 119 L LL + DIT ++ + P + + P P + + + + G+ L+V Sbjct: 48 SFGSSATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGFSGSNLLVVE 107 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE-VE 178 S I D + GGDG+ G Q +N+M+ A S + + Sbjct: 108 QSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFSKKIDISPPR 167 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLE 237 ++ + ++++V F++++G + P + + L L+N Sbjct: 168 VELLDVTEEKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLISSLMNSESA 227 Query: 238 NSRNEDQNW-----------------------------RDNLVRQVQHSQLE-------- 260 Q VQ S +E Sbjct: 228 EEEETVQPEVTYEQPKEPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNE 287 Query: 261 ------------------LVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVP 300 + + +IL+L+ G ++ ++K + + V+ Sbjct: 288 AVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRI 347 Query: 301 VLTSQYGTLNGQYALRIEHLINPILN 326 V + + + +R+ +++ Sbjct: 348 VAKGEVVVIEENFGVRVTDILSQAER 373 >UniRef50_B8EL07 Surface presentation of antigens (SPOA) protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EL07_METSB Length = 314 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 108/287 (37%), Gaps = 3/287 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + +R+ L +I +R L L +V + + + + + Sbjct: 25 IAIDRMPMLHVILDRMIAQCSENLRQLSAPPAFFSVDTVAARRVGDVLDAYENKVAIGVY 84 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGY 165 H L+ +F + LFGGDG +GR+ + E R+ ++ L L Sbjct: 85 HALAWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKALDLFGRAL 144 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE 225 A+ ++ + R E ++ F I N V + I GE I +P + + Sbjct: 145 QSAFSTVSDTAFKLERVETRLDFAVIAPR-NAFGVTAKIKLRILGRHGEMFILIPQAALN 203 Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 +R+ L +++ D W + ++ +++E+ + L I L G +L Sbjct: 204 SVRQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDIADLKVGGILQ 263 Query: 286 IEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 ++ R+ + P+ G +G Y LRI+ ++ ++E Sbjct: 264 LKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSREQEFVDE 310 >UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEY5_PETMO Length = 372 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 66/371 (17%), Positives = 128/371 (34%), Gaps = 64/371 (17%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D IL+Q+E+D+LL G + D + + D + L + I Sbjct: 6 DRILNQSELDSLLKGLNNTDDPKESEETSTVDEKLDAL----------LDMIGEIANITM 55 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLP-VPTNLNLIHLKPLRGTGLVVFSPS 121 L LLRR +I I + N + + + K L G +V + Sbjct: 56 GSGATTLSTLLRRKIEIQYPQTDIIKFKNIITNFEGENVVVTVEYKKGLYGLNTLVLPLN 115 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPLEV 177 L I D + G + +E RE +N+M+ A SD K + Sbjct: 116 LTNIIADLMLG---KDLENIEERELDDISLSAVSEAMNQMMGTASTALSDFLKTNIDISP 172 Query: 178 EYVRS----EMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRELLV 232 R E ++F I T V++ F+V+I + F +P + +REL+ Sbjct: 173 PSSRVVNFSEANIEFPPIETDKEAYVISIKFNVKINGIAETTFWQFIPMKFAQKIRELVE 232 Query: 233 NPPLENSRNEDQNWRDNLVRQ--------------------------------------- 253 + + +E+ + N ++ Sbjct: 233 KTFGKTTEDEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEEPISPNIDLSKLEL 292 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + LEL L L +IL+L+ G ++ + K + + + +G + + ++ Sbjct: 293 LLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVVIDE 352 Query: 312 QYALRIEHLIN 322 + +R+ +++ Sbjct: 353 NFGIRVTEIVS 363 >UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobacillales RepID=A8U602_9LACT Length = 360 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 54/375 (14%), Positives = 115/375 (30%), Gaps = 69/375 (18%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M L+Q EIDA+LNG + + + + ++ + I Sbjct: 1 MSSEKLTQEEIDAMLNGSASTPEPTPT----------------DTLDQTQVDIIGEIGNI 44 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-LIHLKPLRGTGLVVFS 119 L ++L IT + + E P + + K L G+ L++ + Sbjct: 45 SMSQAATTLSDILNHRVTITTPVVSTLKFQEIIDASVTPKVVTTIEFKKGLEGSNLLMMN 104 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV----INRMLKLALEGYSDAWKAINPL 175 I D + GDG E +EFT E +N+M+ A + + I + Sbjct: 105 ERDAIIIADLMMDGDGNP----ENKEFTELELSAVGEAMNQMMGSAATAMATMLERIVDI 160 Query: 176 EVEYVRSEMQVKFTNITTSPND-IVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVN 233 V D +V F + +G+ + E + + ++++ Sbjct: 161 LPPDVEVWKDQNNVTYDRISGDTMVCKIAFQMTVGDFIESEIMQVFTLDTVRNISKIVLA 220 Query: 234 PPLENSRNEDQNWRDNLV----------------------------------------RQ 253 E ++ + + Sbjct: 221 DEGEVIQDRQLPQAEEMTAPIAPAANQPTQETAGKIGIQKPEFQELTHAGSLKTPRNLDL 280 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L+ + + IL L G V+ + K + + +V+G + + +N Sbjct: 281 IMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVINE 340 Query: 312 QYALRIEHLINPILN 326 + +RI ++++ Sbjct: 341 SFGIRITNILSKEQR 355 >UniRef50_A9DR47 Flagellar motor switch protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DR47_9RHOB Length = 315 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 129/293 (44%), Gaps = 4/293 (1%) Query: 42 TQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN 101 Q R +RL LEII +R L + +P+I + ++ PY + ++ P+ Sbjct: 18 RQARESFQRLPTLEIIIDRLLLALVPDLKSYCTIAPEIELTSLEYMPYEDAMESIQSPSL 77 Query: 102 LNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLA 161 + + + + V P L+F ++ + GG + + R T EQ++ R+ +L+ Sbjct: 78 IAIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLGRRLAELS 137 Query: 162 LEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF 221 L+G + + ++P++ + E + + + +P V H++ + +G + LP+ Sbjct: 138 LKGLAQCLQDVSPVQFDIQSLESNPR-SVMLAAPRTATVLVRMHMQFEDRSGHMALVLPY 196 Query: 222 SMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPG 281 ++ + L P L D N R ++ Q+ + + + ++++ L ++L+ G Sbjct: 197 GTLDEVSAQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTG 256 Query: 282 DVLPIEK--PDRIIAHVDGVPVLTSQYGT-LNGQYALRIEHLINPILNSLNEE 331 V+ + ++ V+ P+ + +G NG ALR+ + P + Sbjct: 257 QVIDLGMTVDTPVVGMVNAQPMFQAAFGQRSNGALALRVIQSLLPKETKEESD 309 >UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J737_DESRM Length = 411 Score = 177 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 65/410 (15%), Positives = 129/410 (31%), Gaps = 91/410 (22%) Query: 1 MGDSILSQAEIDALLNGDSEVKD--------EPTASVSGESDIRPYDPNTQRRV------ 46 M +LSQ EIDAL+ G + E + +V + +P + + Sbjct: 1 MS-KLLSQEEIDALMKGQDLGNEPDPLGNQSEMSDTVIEPENTQP-NLAKPEALAEEANY 58 Query: 47 ----VRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPT-N 101 E + AL I L LL + +IT ++IQ + + +P Sbjct: 59 CSLMTLEEMDALGEIGNISMGSASTTLSELLSQKVNITSPRVKIQTKQQLFDSFNIPYLV 118 Query: 102 LNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRM 157 + + + L G ++V + + GGDG ++ E + E +N M Sbjct: 119 IKVDFNEGLNGYNVLVIKLNDAATMASLMMGGDGTPMSE----EISELEISAASEAMNMM 174 Query: 158 LKLALEGYSDAWKAINPLEVE---YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTG 213 + A S ++ + +RS+ D++V F ++IG+ + Sbjct: 175 IGTAATSLSQMFQRTINISPPQTNLLRSKGDP-LAQPPQDIEDVIVVVSFDMKIGDLVDT 233 Query: 214 EFNICLPFSMIE--------------------PLRELLVNPPLENSRNEDQNWRDNLVRQ 253 E + + P+ + D D L Sbjct: 234 EIMQIMSVETAKEEAHLLLKDIMGGTEEQVEAPMVPTEAATSATSIPGSDDRESDELAGI 293 Query: 254 VQ-----------------------------------HSQLELVANFADISLRLSQILKL 278 + L++ + +LK+ Sbjct: 294 MMQETAPPPTPAMPPQAAPIKQTSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKI 353 Query: 279 NPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 PG V+ ++ + + V+G V T + +N + +RI ++I+P+ Sbjct: 354 APGSVVELDSLADEPVDILVNGTLVATGEVVVVNENFGIRITNIISPMER 403 >UniRef50_Q1NGL0 Flagellar switch protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGL0_9SPHN Length = 295 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 123/293 (41%), Gaps = 3/293 (1%) Query: 34 DIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFA 93 D++ + L L+ + ++ R R + + P++ R+ + ++ Sbjct: 4 DVQSFAFGRGELQAPVMLSGLDRLGDKLGRRIRALIEPIAGVRPNVQAQDARVLDFAAWS 63 Query: 94 RNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV 153 +P T+++L + PL+G L+ ++ VD +GG G P V G EFT TE R+ Sbjct: 64 AQVPSFTSISLYRILPLKGQMLLRLDAGMISTLVDCFYGGIGNRPLPVRG-EFTPTEDRL 122 Query: 154 INRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEI-GNLT 212 I R+ + + ++W + PL+ + E V + P D +V F V + + Sbjct: 123 IARISETLMVRMVESWADVLPLDASLILRETGVGYAA-AAQPADQMVLQRFVVTLTRDQE 181 Query: 213 GEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRL 272 ++ P S + + L + D W+ + R+++ +L A +L L Sbjct: 182 WPIDLLFPLSALRAVEALTGAKVPADDDQADPVWQGRIARRMRDIRLPARTVLARPNLSL 241 Query: 273 SQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPIL 325 + +++L GDV+P+ + V V G +G+ A +IE L Sbjct: 242 ADLMELKVGDVIPVTIGRALPLIVGNRIVAHGTIGEQDGRAAFQIEKLAQETD 294 >UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Thermotogaceae RepID=A6LMJ7_THEM4 Length = 370 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 72/387 (18%), Positives = 132/387 (34%), Gaps = 82/387 (21%) Query: 1 MGD-SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 MGD LSQ E+D+LL+ E ++E T I Sbjct: 2 MGDEQFLSQEELDSLLSQIDESQNELTDLEKD---------------------MFGEIGN 40 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL-PVPTNLNLIHLKPLRGTGLVVF 118 L LL R DITV A+ I+ E + +++ + G +V Sbjct: 41 IIMGSGTTALSTLLGRKVDITVPAVEIKKLKEIREEVKGKNAVVSINFKGEIEGLNALVL 100 Query: 119 SPSLVFIAVDNLFGGDGR-FPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 V + + GGDG +V+ + + +N+M+ A SD K + Sbjct: 101 PQMAVARIANIMMGGDGNVETDEVDEISLSAVSEA-MNQMMGAAATSLSDMLKKTVDITP 159 Query: 178 EYVRS----EMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNICLPFSMIEPLRELL- 231 V E VKF + ++ +DIV F +EI L +F + + ++ L LL Sbjct: 160 PTVELLDFDEEDVKFPPVVSNDDDIVAKVNFKLEIEGLEPADFFLTMSPPFVKKLYRLLF 219 Query: 232 -------------------VNPPLENSRNEDQNWRDNLVRQ------------------- 253 P EN ++ +N+ + Sbjct: 220 GEEKKQASPQQQAQPSTPQQAPTTENENIQNVKMSENIQKNPVSVSPVQFQSFESGGIVK 279 Query: 254 -----------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVP 300 + L +V L L Q+++L+ G ++ ++K + + V+G Sbjct: 280 STSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKL 339 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNS 327 + + ++ + +RI +++P Sbjct: 340 IARGEVVVIDENFGVRITEIVSPQERF 366 >UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion protein n=5 Tax=Thermoanaerobacterales RepID=B0K9T5_THEP3 Length = 375 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 62/389 (15%), Positives = 119/389 (30%), Gaps = 79/389 (20%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 + LSQ EI+ALL G +E E + E + E L I Sbjct: 2 NDFLSQEEINALLKGLTEESKENQSQSGKE-------------LTEEEQDILGEIGNISF 48 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVFSPS 121 L+ LLR IT + + + E + +P + + + + L+G L++ Sbjct: 49 GTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNIPYIGVEVEYTEGLKGHNLLILKKE 108 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPLEV 177 V D + GG+G KVE E T +N+M+ A S + Sbjct: 109 DVLKMTDLMMGGEG----KVEDGEITDLHLSAIGEAMNQMIGSAATSLSTLLNKTINISP 164 Query: 178 EYV-RSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPP 235 + + P VV F +E+G + E LP + L + +++ Sbjct: 165 PKAFVVDFTASLPTDISFPEGDVVKIAFKMEVGEIIDSEIMQLLPLDFAKELVQSVLSKN 224 Query: 236 LENSRNEDQNWRD-------------------------NLVRQVQHSQL----------- 259 E ++V S + Sbjct: 225 EEKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSS 284 Query: 260 -----------------ELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVP 300 + + IL+L+ G ++ ++K + + +G Sbjct: 285 KGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKY 344 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNSLN 329 + + ++ + +RI +++ N Sbjct: 345 IAKGEVVVIDENFGVRIIDIVHQSKRISN 373 >UniRef50_B4UFI3 Flagellar motor switch protein FliM n=3 Tax=Anaeromyxobacter RepID=B4UFI3_ANASK Length = 338 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 147/326 (45%), Gaps = 12/326 (3%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARH 64 +L+ EI AL+ + + + S + + PYD +Q R++R ++ L+ INE+ A Sbjct: 8 VLTSDEIKALMGAIQDGRLATEGAPSSRAQVAPYDLTSQDRIIRGQMPTLDAINEQVASM 67 Query: 65 FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVV-----FS 119 +GL R++ IT + + + A L P ++ ++ L G L V Sbjct: 68 LGIGLAGRTRQALRITSAPATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLAE 127 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 L D RE T EQ V+ R+L+L E + AW + P E E Sbjct: 128 ALLAAALGDRRV--RQPEEGGDTRRELTSVEQLVLRRLLRLLAEAMTQAWAPVLPFEPEV 185 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +R E + +I SP D+ + + F ++ G + G ++ +P++ +E ++ L +P S Sbjct: 186 LRLEPDPRMASIA-SPTDVGIVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSSPR-RLS 242 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVD 297 + D+ + D L R+V+ +E+ + + +++L+L G+VL ++ + + V Sbjct: 243 QRADERFADALAREVEQVPVEIRGLYGRARIPFARLLELAEGEVLLLDTDEGRPVPVVVQ 302 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINP 323 G L G AL ++ + P Sbjct: 303 GREKLLGTPTVSGGSLALVVDQPLRP 328 >UniRef50_D0I456 Flagellar motor switch protein FliM n=2 Tax=Vibrionaceae RepID=D0I456_VIBHO Length = 296 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 126/296 (42%), Gaps = 8/296 (2%) Query: 28 SVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQ 87 + + +D+RPYD + + L ++ + ++F + ++LR + T + Sbjct: 9 AENDLADVRPYDLTSPEHRIGAVLATIDNVCKQFETLAKQAFQHILRCPVEFTYQQQHTE 68 Query: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 + + + + + P G++V L F+ VD FGG G + + Sbjct: 69 TLQDHLKAMGEQSLYREFTVSPHHFNGVLVIEKELQFLLVDLFFGGKGIVKARTT---IS 125 Query: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVE 207 TE R++ R L+ Y+ AW++++P + + E + N T + + F + Sbjct: 126 DTEWRMMARFFGQMLDQYAIAWQSVSPWQCQLQPKE-NLDLEN-TRQDSQLHQICRFTMN 183 Query: 208 IGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFAD 267 + G +I LP + ++ LR + E Q+ + ++ + + L++ + Sbjct: 184 VCGHQGWIDISLPLNGLDFLRHRHATDDDAATAPELQHIVNA---TLKKAPIRLLSTLCE 240 Query: 268 ISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 L L I+ L GDV+P+E P ++ P+ T++ N L+++++I Sbjct: 241 RQLSLGDIMALKVGDVIPVELPGEVVVRAGRTPLFTAKVAEQNATLVLQVQNVIEQ 296 >UniRef50_UPI0001C312B7 surface presentation of antigens (SPOA) protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B7 Length = 322 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 123/327 (37%), Gaps = 8/327 (2%) Query: 1 MGDSILSQAEIDALLNGDSEVK-DEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINE 59 M + IL+ +I AL+ + + +A+ ++ D + E+ + + + Sbjct: 1 MSE-ILTNDQIAALVEAAKHGELPDDSAATRRGRRLKTVDFARPTKFTSEQERRIVRTLD 59 Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F + L LR ++ V + + LP + + + P L+ Sbjct: 60 MFCQTAAARLTAELRVPLELEVINTTQLTWSAAQQQLPPASLGTPLEVAPHDTRMLMTAE 119 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 V +A++ L GG P + R+ + + + R+ + S W+ + + Sbjct: 120 LPFVLMAIEYLLGGAPERPPRQ--RKLSEIDWVLSKRLFETLTTQLSIVWQDLAGQTLAA 177 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 + V+ + + ++ + I + + +P+ I+P+ + + + Sbjct: 178 QEVDSHVEGMQVA-AISEPTLTITLESRINRHSSTLALLIPWVSIDPVADQI-AGRDLRT 235 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVD 297 R +D + + + + + A + + + +L L PGD++ + D ++ + + Sbjct: 236 RADDPRAAALVQAALSGAHVTMRAEVGSVEMAIDDVLGLAPGDLVKLSSLAADGVVVYAE 295 Query: 298 GVPVLTSQYGTLNGQYALRIEHLINPI 324 VP+ +Q G + A++I Sbjct: 296 DVPIHHAQPGRSGARRAVQIVDRREQS 322 >UniRef50_A4A5Y9 Flagellar motor switch protein FliM n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5Y9_9GAMM Length = 327 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 137/321 (42%), Gaps = 3/321 (0%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 + +L++ EIDAL+ + D A + + R +D + + + AL + ER Sbjct: 3 SEDVLTEGEIDALMESVDD--DTSAADAADDGQFRRFDFAAREQSLLREFTALGPLVERH 60 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 A L + + + + +L ++ L PL G + Sbjct: 61 AEALGEALESGFSIEFTVRGDTPSLLTVADAVASLERTVAVSTTTLSPLAGPVFAIAPAD 120 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L+ V+ FGG P + T TE R+ R+ + L ++W PLE + Sbjct: 121 LLSFVVNAYFGGGSGGPAESARSNLTPTELRLAERIAEFQLSSMINSWVDKLPLEAGEIN 180 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 + + + +++++ F + G+ + ++ LPF+ +EP RE P ++ Sbjct: 181 TLGMPDRLEMLPA-SEMLLRIAFTLSAGDFSSALSVMLPFAALEPYRERFAPPRKQDDVF 239 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPV 301 E Q W R++ +LE+ A S+ L+ +L+L G V+P+ +++ VD V + Sbjct: 240 EGQTWEPFFRRELPGIELEVAGVLATQSIALADLLELEAGAVIPLAPAEQVSLKVDNVTL 299 Query: 302 LTSQYGTLNGQYALRIEHLIN 322 +YG+ +G A+++ L + Sbjct: 300 AEGRYGSFDGVKAVQLHRLAS 320 >UniRef50_A3T063 Flagellar motor switch protein n=2 Tax=Sulfitobacter RepID=A3T063_9RHOB Length = 318 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 120/314 (38%), Gaps = 5/314 (1%) Query: 21 VKDEPTASVSGESDIRPYD-PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDI 79 + + TA E+ D +RL L+II +R + + L +L+R + Sbjct: 2 SESDTTARRPDEAGSTLIDEIIRMSDFTFDRLPMLDIIGDRMVENLSVALPDLMRAMCEA 61 Query: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139 ++ ++ P + LP PT L + P G LVV +++ AV+ + GG+ + Sbjct: 62 SLASLDYIPMGKVIEGLPKPTFLAVGTGHPFVGEILVVMDQTVLMTAVELMLGGNAKNVD 121 Query: 140 KVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIV 199 FT E R+ + + +E R E + + I + + + Sbjct: 122 LDNTDPFTAIELGFGERLASAVFAELERSLSVVGAANLELDRIETEAEGAAIAKNTS-LC 180 Query: 200 VNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQL 259 + + TG ++ +P+ +E + L + WR + Q++ + + Sbjct: 181 ARLRLSLTLAGNTGNLDLVIPYDALEQILPDLGKVYFGDRMVSQDQWRGLIGAQIERANV 240 Query: 260 ELVANFADISLRLSQILKLNPGDVLP--IEKPDRIIAHVDGVPVLTSQYGTLNGQY-ALR 316 +L ++ L +I+ PGD + IE+ P+ G N Y A++ Sbjct: 241 DLDVVLSENVFPLQKIMSWRPGDTIDFGIEEGRDATVTCADTPMFNVSLGKRNNGYVAVQ 300 Query: 317 IEHLINPILNSLNE 330 I + + + ++ Sbjct: 301 ITEKLEILEDHEDD 314 >UniRef50_A1UTV5 Flagellar motor switch protein FliM n=1 Tax=Bartonella bacilliformis KC583 RepID=A1UTV5_BARBK Length = 323 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 105/314 (33%), Gaps = 3/314 (0%) Query: 22 KDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITV 81 E + + D+ + + L + + I A H + + I V Sbjct: 10 NPETQENEEKKQDVLAQHILRAAGLSSDDLMSFQYIFRDAASHLCSQINHYTPLEFTIDV 69 Query: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 ++ + + + T L + V LV + + FG Sbjct: 70 VSLDTLKIDKITQTIGTDTLLIDFSSDRWGNDVIFVLDSVLVELITETFFGATEPKIINR 129 Query: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVN 201 GR F+ TE + KL + + + + ++ +F T + + + Sbjct: 130 NGRPFSPTECSISEHFGKLLANAMDSVFGTGDKSLLIFTQTRKAQEFNTETFHQSQM-FS 188 Query: 202 TPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLEL 261 ++ G NI +P S P+ E + + D W L ++V + +++ Sbjct: 189 CTLSIKCGEAEAHLNILMPRSCHRPIHEAITRALRAPEKRMDPLWTKRLRKEVSQAHVQI 248 Query: 262 VANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 A S+ L+++L L G VLP+ ++ + G + +++R+ Sbjct: 249 EAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGKIGKNFSIRVTD 308 Query: 320 LINPILNSLNEEQP 333 I+ +NE Sbjct: 309 PIDEEKEMINELVH 322 >UniRef50_Q8D3E8 FliM protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3E8_WIGBR Length = 319 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 160/316 (50%), Gaps = 3/316 (0%) Query: 16 NGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRR 75 N D E+ +E + S S + N + + ++ L +N++F + + + N ++ Sbjct: 5 NYDVEINNEKKNNFSEISKNIFLNKNKSKECNKSIIEKLNNVNQKFTGYIKKEITNYIKE 64 Query: 76 SPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDG 135 DIT I Q Y +F ++ ++NLI + +++ + V I +D FGG G Sbjct: 65 PIDITSKEIYTQKYCDFIKDFNTLVSINLIKTNLFKNDLVIILTTEFVSIILDIFFGGTG 124 Query: 136 RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA-INPLEVEYVRSEMQVKFTNITTS 194 + EF+ +E+R+I+ + KL + Y + K IN + +E V S+ ++ I Sbjct: 125 NSFGRKNLNEFSISEKRIIDILNKLIINCYQKSLKDNINSINLELVTSDTCIQL--INFD 182 Query: 195 PNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQV 254 N+ + + F+ NL F I +E N E W++ LV ++ Sbjct: 183 KNEKIFISKFNFHYKNLKINFFIIFSTFSVENENLFYEKKLSNNKEKEQNKWKNKLVNEI 242 Query: 255 QHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYA 314 + S+L + FAD+S+ +S ++ LN G+++PI K ++ A+VD +PV + YG+LNG YA Sbjct: 243 KSSKLLIQVKFADLSICVSDLINLNKGEIIPIVKTKKLTAYVDCIPVFSGSYGSLNGHYA 302 Query: 315 LRIEHLINPILNSLNE 330 LR+E++IN +N +++ Sbjct: 303 LRVENIINSYINKIDK 318 >UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ5_HALOH Length = 375 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 60/389 (15%), Positives = 124/389 (31%), Gaps = 85/389 (21%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFAR 63 ILSQ EIDAL++ E +E + E L I Sbjct: 8 DILSQEEIDALMDNSDEDSNE---------------------LTHEERDVLGEIGNIAMG 46 Query: 64 HFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-LIHLKPLRGTGLVVFSPSL 122 L +L + +IT + + + E ++ P L + ++ L G L++ Sbjct: 47 SAATALSTILDQKVEITTPKVEVVTFKELSQEYERPCVLVRVKYISGLEGINLLIIKEED 106 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE---- 178 + D + GGDG K++ + + +N+M+ + S + + Sbjct: 107 AMVIADLMMGGDGTSDEKLDEIHLSAIGEA-MNQMMGSSSTSMSSILNEVVNISPPETKY 165 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLE 237 E+ K S ++ VV+ F +++G+ + F P + L LV Sbjct: 166 LDIDELNGKREKYLGSDDEKVVSISFRLKVGDLIDSSFKQIAPMGFTKQLAVKLVEEMGG 225 Query: 238 NSRNEDQNWRDNLVRQVQHS---------------------------------------- 257 + + + + + V + Sbjct: 226 LTAKDAEEEKGEARKTVAATASTGSASTTGQPVSGSANRVSAGEENVDVKRAQFPSFDNG 285 Query: 258 -------------QLELVA--NFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVP 300 + L + + QIL L G ++ +EK + + V+G Sbjct: 286 NTAPLPQNMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKL 345 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNSLN 329 + + ++ + R++ +I+P+ N Sbjct: 346 IAKGEVVVIDENFGFRVKDIISPMERLNN 374 >UniRef50_D2LCZ9 Flagellar motor switch protein FliM n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCZ9_RHOVA Length = 314 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 122/312 (39%), Gaps = 4/312 (1%) Query: 25 PTASVSGESDIRPYD-PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 + + + + D ++ +RL L I E A + V Sbjct: 4 QSPDAATGAGVEIIDKLKELSKLSLDRLPVLTSIFEGMALSCCDEFREYCSPAVTAFVNQ 63 Query: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 I + ++ + + + ++ LVF VD ++GGDG + Sbjct: 64 IVSGDSWDLLEACSDGVSV-IFYCREWDARIVIGVERRLVFSIVDAMYGGDGSELPYEDK 122 Query: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTP 203 R FT E ++ + + ++++++ + + + R+E + F ++ N ++++ Sbjct: 123 RSFTALETKIGRVICEFGARSFTESFRTVGEITLAPERTETALDFASLG-QHNMMLIHAQ 181 Query: 204 FHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVA 263 ++ ++ G + +P +++ P+R+ L + D W L ++V +++ + A Sbjct: 182 ILFQVLDVGGVMFVLIPQNVLLPVRQKLERQRAPMLSSVDPRWTSLLSQRVSRAEVTMDA 241 Query: 264 NFADISLRLSQILKLNPGDVLPIEKPDR-IIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + L Q+ KL G L +E +R I +G + G G Y + I+ ++ Sbjct: 242 VILGKEIELGQMFKLEVGKTLELEGTERNIFFEYEGDRLFRGCLGRERGTYTVTIDEALS 301 Query: 323 PILNSLNEEQPK 334 I E + + Sbjct: 302 DIDVEETESRHR 313 >UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmicutes RepID=Q0AYM4_SYNWW Length = 398 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 68/405 (16%), Positives = 123/405 (30%), Gaps = 91/405 (22%) Query: 1 MGDSILSQAEIDALLNGDSEVKDE--PTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D ILSQ EIDALL G S V D ++ S I D L + Sbjct: 1 MNDGILSQEEIDALLTGSSPVTDTIGSSSDPVSTSSINLSDF---------EKDTLGEVG 51 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-LIHLKPLRGTGLVV 117 L LLR+ IT + + E P+P + + + + + GT ++V Sbjct: 52 NISMGTAATTLSTLLRKKVSITTPDVSVTNPEELQLLYPLPFLVVEVSYTQGVTGTNVLV 111 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV----INRMLKLALEG--------- 164 I D + GGDG EG+ E +N+M+ A Sbjct: 112 IKEEDAAIIADLMMGGDGLSA---EGKNLGDLELSAVGEAMNQMMGSATTSLSSMFNQRI 168 Query: 165 ------------------YSDAWKAINPLEV--EYVRSEMQVKFTNITTSPNDIVVNTPF 204 S ++ + ++ E I + +++ Sbjct: 169 DIAPPQLTVIDMGKEFLQLSTSFDDVVKIKFKMEIENLINSEIMQIIPMEAVENIMSILL 228 Query: 205 HVEIGNLTGEFNICLP--------------------FSMIEPLRELLVNPPLENSRNEDQ 244 + E + P + I P + + + Sbjct: 229 GSTAEESSAEAVMEEPLVGMPLPETKAAAVAAPRQAETAISPPPQEPIYGQAFVQSPREM 288 Query: 245 NWRDNLVRQ---------------------VQHSQLELVANFADISLRLSQILKLNPGDV 283 + R Q + L++ + +IL+LN G + Sbjct: 289 SNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDVPLDVSVELGKTKKTIGEILELNQGAI 348 Query: 284 LPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + ++K + + V+G + + ++ Y +RI +I+PI Sbjct: 349 IQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITTIISPIDR 393 >UniRef50_Q1GNY8 Surface presentation of antigens (SPOA) protein n=1 Tax=Sphingopyxis alaskensis RepID=Q1GNY8_SPHAL Length = 312 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 103/270 (38%), Gaps = 5/270 (1%) Query: 52 QALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLR 111 ALE + +FAR R + L + + E++ P H PL+ Sbjct: 40 PALESVANQFARSLRDLVRALGAPGVQVERSGAEQLSFAEWSGA-AAPAIFWRYHAPPLK 98 Query: 112 GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKA 171 G L+ + L+ VD +GG G+ + E E T E R R+ + + AW+ Sbjct: 99 GPLLIAAARPLLLQLVDIFYGGRGQLGGERE--ELTDAEDRFAARLGRDIGMQIAAAWRD 156 Query: 172 INPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTG-EFNICLPFSMIEPLREL 230 +E E + +++ V F + L G P + + + Sbjct: 157 KLVIEPELDCVTGDPAKLAAVRADDELFVQ-RFTLRGAPLDGRTIACAYPVAALRGIAGD 215 Query: 231 LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD 290 + P ++ D W L + ++ +L + + A + L ++L L GD++P+ P Sbjct: 216 ELLPDMQGGNGGDPAWTGALDKALRGVRLPVRSVLARPEISLVKLLALEVGDIIPLSMPR 275 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + V G G NG A+ I+H+ Sbjct: 276 HVPVTVAGRSFAFGSIGEANGNAAILIDHI 305 >UniRef50_C2KTP4 Flagellar motor switch protein FliM n=3 Tax=Mobiluncus RepID=C2KTP4_9ACTO Length = 307 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 119/302 (39%), Gaps = 7/302 (2%) Query: 24 EPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 + ++ + YD + ++ RE + +E+ E F R + L L + G Sbjct: 2 AKQSKADRAAEAKVYDFSKPMKLPREYARIMELALEAFTRSWINQLVGRLHVVITGSAGD 61 Query: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 + ++ Y ++ +P T + ++ + R G++ F VD+L GG G Sbjct: 62 LVMRSYDDYIAKMPSTTCMVIMDFQNGRNKGILQFPRQTALAWVDHLLGGQGD-IESTPD 120 Query: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTP 203 R+ T E +++ LK + A+ + PLE + + E +F I+ P Sbjct: 121 RQLTEVEVSILSDFLKRVMMDLDMAFAGMLPLETKLLNLEYAPQFVQAYDGSTPILF-AP 179 Query: 204 FHVEIGNLTGEFNICLPFSMIE---PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLE 260 + G + +I +P +MI + + E + E R LV ++ +E Sbjct: 180 ITLTTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLEEIPVE 239 Query: 261 LVANFADISLRLSQILKLNPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIE 318 + F+ + ++ L GD LP+ P + VD + + + GT + A + Sbjct: 240 VAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILAEAAAGTSGSRLAAMVV 299 Query: 319 HL 320 + Sbjct: 300 SV 301 >UniRef50_A6X6R4 Surface presentation of antigens (SPOA) protein n=30 Tax=Brucellaceae RepID=A6X6R4_OCHA4 Length = 317 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 112/314 (35%), Gaps = 3/314 (0%) Query: 19 SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPD 78 D T + +SD+ + + + L++L + + + HF L + + D Sbjct: 1 MTTPDTATLGQNRKSDVLAENLLRAAGLSGDDLKSLAHVFKDASTHFCDRLKHGCAAAFD 60 Query: 79 ITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP 138 + G + FA L + + + T + +LVF ++ ++G G Sbjct: 61 VEAGQVESTDDAAFADILDKAAIIAPLKAERWGSTLYLTADATLVFSVIEAMYGAQGHVG 120 Query: 139 TKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI 198 + E R F EQ++ + + A +F + Sbjct: 121 SVDEDRPFGMLEQKISALLAGHLASSLDQVFAANGQALFTAGECTDTAEFDRENFERS-R 179 Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQ 258 + V TG+ ++ LP S +P+++ + D +W + ++V ++ Sbjct: 180 LFACRIDVTAAGKTGQVHLLLPRSTHKPMQDAVAAFLRRPMNQTDPSWAKKMRQEVSRAR 239 Query: 259 LELVANFADISLRLSQILKLNPGDV--LPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALR 316 +EL A S+ L + L G V LP++ ++ + G + ++ Sbjct: 240 IELEAFIQQGSMTLDALSMLEIGQVLKLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVK 299 Query: 317 IEHLINPILNSLNE 330 + +N + ++E Sbjct: 300 VGDPVNQEEDFIDE 313 >UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Thermotoga RepID=A8F896_THELT Length = 343 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 48/359 (13%), Positives = 120/359 (33%), Gaps = 59/359 (16%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M L+Q E++ LL G S+ E A++ I+ Sbjct: 1 MNSDFLTQDELNELLKGLSDTLSEHDQE------------------------AIKEISNL 36 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 L ++ R +T+ I + + + + + L+G L++F Sbjct: 37 IIDSSTAALGIVIGREVKVTLVEISQKTLKDLLSSFDETIVAVQIEFSDGLKGEFLILFP 96 Query: 120 PSLVFIAVDNLFGGDGRFPT-KVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 SL D + GG G + +++ + +N+M+ + S+ K + Sbjct: 97 QSLGARIADMMMGGSGEPESFELDEVRLSAI-TETMNQMMGSSTTSLSEQTKKKVSISKL 155 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIE------------ 225 V + + + + ++ + +++ N + + P + Sbjct: 156 KVDLVKKDEEPVLNFNLAQVLAYVAYEIDLENSHKSKILLIAPALFFKDIYKIIHPAQEP 215 Query: 226 ----------------PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADIS 269 P++ + + + + D L + L++V Sbjct: 216 EKEKEQKREEEKVKVQPVQFQEFDQSQRAAVSTPSEFSDKLEL-LLDVPLKVVVELGRAK 274 Query: 270 LRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + L Q+L++N G ++ ++K + + V+G + + ++ + +RI ++ P Sbjct: 275 MTLKQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQR 333 >UniRef50_A0Z384 Flagellar motor switch protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z384_9GAMM Length = 323 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 120/327 (36%), Gaps = 15/327 (4%) Query: 1 MGD-----SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALE 55 M + +LS+ EI+AL V T +V + + +D + + L+ Sbjct: 1 MSEADDNQPVLSEEEIEAL------VDHAVTDNVFDDGQFKSHDFGAGEALTLSKWSELD 54 Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 + A + L + I A + + L +KPL G Sbjct: 55 GLLRAHAEVLQGVLLRNFGQQATIEPFAPLFARVGDLIPAMSDRIALITTEIKPLEGESH 114 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + F + V+ FGG K+ G+ T +EQR+ ++ K L + W L Sbjct: 115 LEFPGDFLSFLVNQYFGGSTVASPKLAGK-VTPSEQRLSEQLAKDVLRTLVEVWSDRLAL 173 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG-NLTGEFNICLPF-SMIEPLRELLVN 233 E + ++ ++ + VV + V G + GEF + LP+ SM L+ Sbjct: 174 EPGDLYVDITTDRLSLLPADMGYVV-LTYSVACGSDYQGEFRLLLPYESMALQAPRLMPA 232 Query: 234 PPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRII 293 E + W L V +EL + + L +L G V+PI++P Sbjct: 233 RREEPEVVVEPEWEARLQSAVPEIDVELCGVVSLLETSLRNLLAFKVGTVIPIDEPQTAQ 292 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHL 320 V+G + +YG + A++I Sbjct: 293 LMVEGRGIARGKYGAHDSSRAVQITDF 319 >UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF0_9FIRM Length = 541 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 37/323 (11%), Positives = 98/323 (30%), Gaps = 46/323 (14%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNL 104 + + + I L LL +IT I I + P P +N+ Sbjct: 216 ISADEGDTIAEIGNISMGAAATALSTLLDNRVNITTPRISITTLRQVREQYPQPCVVVNV 275 Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP-TKVEGREFTHTEQRVINRMLKLALE 163 + L G +++ + + G P +++ + + +N+M+ + Sbjct: 276 RYRTGLSGENVLIMGEQDAALIAAVMMGEPTDGPLGELDEIRLSAVSEA-MNQMMGSSST 334 Query: 164 GYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFS 222 ++ + + + ++T + +D +V F +E+ ++ + +P Sbjct: 335 ALAEMFSREVDITPPVTEYGNPAEEADLTVNIDDPMVQVSFRMEVADILDSDLIQLIPLK 394 Query: 223 M--------------------------------------IEPLRELLVNPPLENSRNEDQ 244 +EP+ L+ S E Sbjct: 395 FAREMAGVLLGAFAGEEENHDFAQETEPVVEPLLPNVEDVEPVMSTEPQDWLQESSPEST 454 Query: 245 NWRDN--LVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDGVP 300 + + ++ +E+ L L +++ G V+ + + +G Sbjct: 455 LPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDILANGKL 514 Query: 301 VLTSQYGTLNGQYALRIEHLINP 323 V + N ++ ++I ++ Sbjct: 515 VARGEVVHYNERFGIKITEIMQD 537 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 10/234 (4%) Query: 44 RRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN 103 +++ +L AL L NLL +IT + + PVP L Sbjct: 2 KKLTSLQLDALAENGNIAMGAAATALSNLLGHRVEITTPTLTYTSMGKIREAYPVPCVLA 61 Query: 104 -LIHLKPLRGTGLVVFSPSLVFIAVDNLFG-GDGRFPTKVEGREFTHTEQRVINRMLKLA 161 + + K + G+ + + S + + + G D P ++ + + +N+M+ + Sbjct: 62 RVRYSKGIEGSNMFILSRCDAGVIANMMMGDADLPVPEVLDELYLSAISEA-MNQMMGSS 120 Query: 162 LEGYSDAWKAINPLEVE----YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFN 216 S+ + + Q K +D V+ F + IG+ + Sbjct: 121 ATAMSEMLGRLVDITPPDLTYVEDLSTQEKQIGEFALDSDEVIKVSFDLSIGDYVNSTML 180 Query: 217 ICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISL 270 LP E + L+ + + + + + + + +A +IS+ Sbjct: 181 QVLPLEFAENMVAELLGSFTDGTEEKVEE--GVKEEAISADEGDTIAEIGNISM 232 >UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema pallidum RepID=B2S3V9_TREPS Length = 348 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 114/364 (31%), Gaps = 52/364 (14%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +SQAEIDALL+G + A+ + S + + + L+ + Sbjct: 1 MSDGSISQAEIDALLSGVEMGAGDSPAAGASFSG---------GGLSSAQSELLQSFCQA 51 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKP-LRGTGLVVFS 119 F L +L ++ I+ + I EF+R +P +I + G L + + Sbjct: 52 NVGSFCPSLESLTGKTVSISPPRVEISSKEEFSRVIPDMLVATVIDFEGEFAGDHLFLMA 111 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 P V+ + +++ + + + + +A N V Sbjct: 112 PEFAQKLVNLV---SHEDNDQIDDMGLSVVSETITQYVSAQLST-----LEARNVQNVSV 163 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 +E + P + + VE+ + + ++ + E + Sbjct: 164 APAESVQVPKAMVRFPPQRLCVFTYTVELDGTSYTLWELVSEQLMVRIIERMGGAMQRPQ 223 Query: 240 RNEDQNWRDNLVRQ--------------------------------VQHSQLELVANFAD 267 + + Q + +E+ Sbjct: 224 AQVGNSQMGGVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFMEVTVELGR 283 Query: 268 ISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPIL 325 + + IL + G ++ ++K + + V+ + + ++ + +R+ +++P Sbjct: 284 TRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDENFGVRVTEILSPGE 343 Query: 326 NSLN 329 + Sbjct: 344 RIAD 347 >UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1I6_DESAS Length = 572 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 97/335 (28%), Gaps = 59/335 (17%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNL 104 + + AL + L LL + IT I I E + +P + + Sbjct: 236 LESQEKDALGEVGNISTGSASTTLSALLNQRVQITSPRISILTETELLSSFELPFMTVKV 295 Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKL 160 + + + G L V + I D + GG+G + E T E +N+M+ Sbjct: 296 QYTEGIIGFNLWVVTLRDALIIADLMMGGEGIPASN----EITELEISAASEAMNQMIGT 351 Query: 161 ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICL 219 A + + I + + + +VV F + +G++ E + Sbjct: 352 AATSLAAIFNRIINISPPETHIIRARENLGEIIDTHPLVV-ISFRMIVGDVMDTEIMQIM 410 Query: 220 PFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQ-------------------------- 253 + LL++ + + + Sbjct: 411 SVETAKYEVGLLLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQS 470 Query: 254 --------------------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDR 291 + L + + +L L PG V+ + + Sbjct: 471 VPEERVSQTPADVNWDKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEP 530 Query: 292 IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + V+G V + +N + +RI ++I P Sbjct: 531 VEVLVNGTLVARGEVVVVNENFGVRITNVITPQER 565 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 94/283 (33%), Gaps = 25/283 (8%) Query: 1 MGD---SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 M + +LSQ EIDALL+ + + + + + AL + Sbjct: 1 MSNNGGKLLSQEEIDALLSSSGQTEPVIVEEQV---------------LRSDEIDALGEV 45 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL-PVPTNLNLIHLKPLRGTGLV 116 + L +LL + I+ +I I EF + + + +K L G L Sbjct: 46 SNISMGTSSTTLSSLLNQQVQISGASISIMSEEEFMSSYRASYMAVRVQFVKGLSGFNLW 105 Query: 117 VFSPSLVFIAVDNLFGGDGRF-PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + + + + G +G ++ E + + +N+M+ ++ G + + + Sbjct: 106 LVKLHDALVMANLMMGVEGTPVTGEINELEISAASEA-MNQMISTSVTGLAGMFNRTIDI 164 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNP 234 R + VV F + +G+ L E + + L+N Sbjct: 165 SPPQTRIINEGDTLEELVVEGPFVVLF-FKMTVGDMLDTEIIQIISVETAKEAVSSLMNA 223 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 277 ++ +N ++ + + S LS +L Sbjct: 224 MDVSAGVSLENILESQEKDALGEVGNIST--GSASTTLSALLN 264 >UniRef50_A4J3G9 CheC, inhibitor of MCP methylation n=2 Tax=Desulfotomaculum RepID=A4J3G9_DESRM Length = 333 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 62/351 (17%), Positives = 110/351 (31%), Gaps = 43/351 (12%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M + +L+Q EID L E + A + + L + I Sbjct: 1 MSEKVLTQKEIDELFARYEEQPIKQEAK---------------DLLNMQELDIIGEIGNI 45 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-LIHLKPLRGTGLVVFS 119 L LL + I I + E + P + + + L G ++V + Sbjct: 46 CMGTAATTLSQLLSQRVIIGYPKIIVCQQDEVFGSFSTPYLIIEVQFKEGLNGFNVLVIN 105 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPL 175 + I D + GG+G+ V T E +N+M+ + +D + + Sbjct: 106 EEEIAIIADIMMGGNGQVTKPVM---ITEMELSASTEAMNQMIGSSATAMADLFGIGIDI 162 Query: 176 EVEYVRSEMQVKFTNITTSPND-IVVNTPFHVEIGN-LTGEFNICLPFSMIEPLREL-LV 232 + + T P D VV F + IG+ + F L+ Sbjct: 163 APPKATMVEDLLNASHTPLPTDKPVVVARFEITIGDIIKTTFMQITNVDAARDQANYLLM 222 Query: 233 NPPLENSRNEDQNWRDNLVRQ----------------VQHSQLELVANFADISLRLSQIL 276 ++ N ++ D V Q ++L + I + Sbjct: 223 KAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLGKIRCTAGDLA 282 Query: 277 KLNPGDVLPIE-KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 KL GD L I +I V G+PV + T + ++I L + Sbjct: 283 KLKKGDTLAIPFSSQQIKLLVGGIPVALGELQTHAEETKIKISRLYQKSIK 333 >UniRef50_A0Y177 Flagellar motor switch protein M n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y177_9GAMM Length = 230 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 104/186 (55%), Gaps = 1/186 (0%) Query: 145 EFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPF 204 EFT TE+R++ +LK+ E Y +AW + + EY+ SE+ NI SP ++VV + F Sbjct: 12 EFTPTERRIVQMLLKIIFEDYKEAWAPVMDVSFEYLDSEVNPAMANIV-SPTEVVVISSF 70 Query: 205 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVAN 264 H+E+ G+F+I LP+SM+EP+RELL ++ + D W L ++ ++++ Sbjct: 71 HIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVDMSTQ 130 Query: 265 FADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 ++ L L QI++L GD++P+E P+ I V+ +P ++ G AL+I I Sbjct: 131 LLEVDLTLQQIMELKAGDIIPVEMPEHITVFVEELPTFRAKMGRSRDNVALQISEKIKRP 190 Query: 325 LNSLNE 330 + +E Sbjct: 191 DSVKSE 196 >UniRef50_C6QEZ9 Surface presentation of antigens (SPOA) protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEZ9_9RHIZ Length = 322 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 115/294 (39%), Gaps = 13/294 (4%) Query: 48 RERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL 107 +RL L+ I + R L ++ + + E LP T ++ Sbjct: 27 PDRLPGLQTIFGQLPRVMVEELGSVSSFPVKARLLDLSASTIGESCN-LPPNTYAGVVRA 85 Query: 108 KPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSD 167 + R + P+L + V++ G +G PT + R T T+ ++ M + S Sbjct: 86 ERWRNWLYFISDPTLTALFVESALGCEGLPPTGLTERRLTKTDANILRVMFRRVTRALSH 145 Query: 168 AWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL 227 A+ + ++++ +++ S + V++ +E TG I +P + IEP+ Sbjct: 146 AFSILVDVQLDLGDVVDKIEL-EPQLSTSSPVISARLAIEYFGQTGILTIVIPQAAIEPV 204 Query: 228 RELLVNPPLENSRN---------EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKL 278 R+LL + +D +W L ++ + + L + + L ++ + Sbjct: 205 RDLLAVASAGEAVGAAPPSARAYDDTSWSKQLSEEIARAFIGLNGILEERPISLGEVQRF 264 Query: 279 NPGDVLPIEKPD--RIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 G V+ + R+ D +P+ + G +G LRIE + +++E Sbjct: 265 AVGSVVELTSTSLARVRLDADEIPLFWCELGKRDGTLTLRIEDDFDQNKETIDE 318 >UniRef50_C7M221 Surface presentation of antigens (SPOA) protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M221_ACIFD Length = 302 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 61/289 (21%), Positives = 119/289 (41%), Gaps = 7/289 (2%) Query: 27 ASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRI 86 + + E +R D R + LE++ E R + LRR + +G + Sbjct: 4 ENEARERQVRTVDFRLPHSFDRAEQRGLELLVENALRPAATLMGASLRRGVRLELGRMDQ 63 Query: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF 146 P+ + P + L PL G++ F +D G + +E R Sbjct: 64 LPWEQVVAQQDGPALVISFALVPLGSRGVLRFGADAALRLLDLR---LGGDGSPIEPRAL 120 Query: 147 THTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHV 206 T EQ ++ ++ L + + + + + ++ V +E ++F + SP ++ + P + Sbjct: 121 TELEQGLLVQVFSDLLVQLASSLQTLLDVRLDRVGAETSLEFVQV-ISPGEMCLVVPIAL 179 Query: 207 EIGN-LTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANF 265 IG+ L E + LP+SM+ P+ EL+ + +RD L ++ +LE+ F Sbjct: 180 GIGDELESELTLYLPYSMLRPVVELIAQRAIVAVDRGGDTFRDLLAARLHDVRLEVSVRF 239 Query: 266 ADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDGVPVLTSQYGTLNGQ 312 S+ +L+L PGDV+P+ + VD + + G + Sbjct: 240 EPTSISSRTLLELAPGDVVPLGHRQGQPAWVIVDRTRLHRAVMGQSGSR 288 >UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Bacillales RepID=A7GNF7_BACCN Length = 554 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 119/344 (34%), Gaps = 40/344 (11%) Query: 15 LNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLR 74 L+G E + +P Q ++ +E L I L LL Sbjct: 214 LSGGGEQELIEEVQEEENKQELVEEPPFQEKLTQEEKDVLGEIANISIGSASTVLSTLLN 273 Query: 75 RSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGD 134 + I+ + + LN+ ++ L+ + VF+ + VD + G Sbjct: 274 QPVSISTPNVETIDVRYYDGVPVPFVILNVDFVEGLKSENVFVFTKDVALTMVDLMMMGT 333 Query: 135 GRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTN 190 G ++ E T E ++N+M+ A S+ + + V+ + Sbjct: 334 GEIDSEQ---ELTEMELSGVKEIMNQMMGHAATAMSEMFMEKMDITPPTVKFVTLKEEME 390 Query: 191 IT--TSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWR 247 + +D +V F++EIG+ + + LP S + + + L++ +E S ++ Sbjct: 391 YLGKEADSDELVQITFNLEIGDLVQSKMYQILPLSEAKEMVKRLLHVDVEESIELEEEAS 450 Query: 248 DNLVRQ----------------------------VQHSQLELVANFADISLRLSQILKLN 279 +Q+ ++ + F + IL L+ Sbjct: 451 IKEENVEEIPEPAVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILSLH 510 Query: 280 PGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 D + +++ + I +V+ V V + ++G + +++ + Sbjct: 511 ENDAVVLDEEVDEPIRIYVNNVLVAYGELVNVDGFFGVKVTKSL 554 Score = 83.5 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 10/278 (3%) Query: 26 TASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIR 85 + + E + + + L I L +L R IT + Sbjct: 2 SEQHTKEDKATSVLKKENQLLTSQEYDILGEIANISFGSASTVLSTILNRQVSITTPHVE 61 Query: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGR-FPTKVEGR 144 + ++ LN+ K L L+V + D + G G K G Sbjct: 62 VVDLYDTRDIEVPHVVLNIQFTKGLDMENLLVLQQDVALAIADLMMMGTGEVEEGKELGE 121 Query: 145 EFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPND--IVVNT 202 Q +N+M+ A S+ ++ + ++ + + ++ ++ Sbjct: 122 LELSAVQEAMNQMMGFAATSMSEFFQDTVDMSPPTIKVVKLFEEIEKISGVDESNTIIKV 181 Query: 203 PFHVEIGN-LTGEFNICLPFSMIEPLRELLVN--PPLENSRNEDQNWRDNLVRQVQHSQL 259 F ++I + + + + + + L+ E E+ +N V+ Sbjct: 182 SFDLKIDHLVNSKLVQIVSVEHAKQMISKLLQLSGGGEQELIEEVQEEENKQELVEEPPF 241 Query: 260 ELVANFADISLRLSQILKLNPGD---VLPIEKPDRIIA 294 + + + L +I ++ G VL + Sbjct: 242 QEKLTQEEKDV-LGEIANISIGSASTVLSTLLNQPVSI 278 >UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax=Bacteria RepID=C4Z5H2_EUBE2 Length = 437 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 92/266 (34%), Gaps = 9/266 (3%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVR--ERLQALEIINER 60 D +LSQ EI+ALL+G D+ ++ + P + + + A+ I+ Sbjct: 2 DGMLSQDEINALLSGMGSGGDDAESTGTATVTDTPDNNSAEDSFTLTESEKDAVGEISNI 61 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-LIHLKPLRGTGLVVFS 119 L +LL + +IT + + + + +R P + + + + L G +++ Sbjct: 62 SMGTAATTLSSLLSQKVNITTPKVEVATWDDLSREYDRPCVMMQISYKEGLAGNNVLILK 121 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGRE--FTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 + V I D + GG G E + + +N+M+ A S + + Sbjct: 122 ENDVKIITDLMMGGTGTANPDEPLSELHLSAIGEA-MNQMMGSAATSMSSMFNRKIDISP 180 Query: 178 EYVRS--EMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNP 234 + N V F ++IG+ + E P + L + Sbjct: 181 PVANLVETYNELDEGMPAFLNKPFVKVAFKMQIGDLIDSEIMQLYPKEFAQELLNMFTPS 240 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLE 260 ++S ++ Q + Sbjct: 241 SDDSSNSQPQPEPQPASQAPVQQPAP 266 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/308 (9%), Positives = 83/308 (26%), Gaps = 40/308 (12%) Query: 43 QRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIR-IQPYHEFARNLPVP-- 99 + L A+ + + ++ R DI+ ++ Y+E +P Sbjct: 142 DEPLSELHLSAIGEAMNQMMGSAATSMSSMFNRKIDISPPVANLVETYNELDEGMPAFLN 201 Query: 100 -----TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVI 154 + + + ++ ++ E Q + Sbjct: 202 KPFVKVAFKMQIGDLIDSEIMQLYPKEFAQELLNMFTPSSDDSSNSQPQPEPQPASQAPV 261 Query: 155 NRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGE 214 + A + + + + V ++ G Sbjct: 262 QQPAPQA--------QPVQQPAPQAQSVQQPDMNMQQAGMMGQAVPQQGMAMQ----QGM 309 Query: 215 FNICLPFSMIEPLRELLVNPP------------------LENSRNEDQNWRDNLVRQVQH 256 +P+ P++ ++ P + + + + + ++ Sbjct: 310 PMQGMPYGYGMPMQGMMGQPMPMQGYAQPQDVNVAPAAFQPFATDVNPISQKENIELIKD 369 Query: 257 SQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYA 314 LE+ + + IL+ PG ++ + K + + V+G V + + + Sbjct: 370 VPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEESFG 429 Query: 315 LRIEHLIN 322 +RI +I Sbjct: 430 VRITEIIK 437 >UniRef50_Q18D13 Putative flagellar motor switch protein n=5 Tax=Clostridium difficile RepID=Q18D13_CLOD6 Length = 293 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 117/295 (39%), Gaps = 15/295 (5%) Query: 34 DIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFA 93 D++ YD + RE L L + F + ++ + L+ + + V +I Y F Sbjct: 3 DMKEYDFGKPQSYSRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTFL 62 Query: 94 RNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV 153 + + ++P+ S+ + +D GG G K RE T +++V Sbjct: 63 DRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKV 120 Query: 154 INRMLKLALEGYS--DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHV-EIGN 210 + ++ + + ++ I + + + + + SP V V Sbjct: 121 LLHLMDDLVRNMHLFEGFENI-----QVLDTHTHINLPQLC-SPTAPVCVVDLKVLNDNE 174 Query: 211 LTGEFNICLPFSMIEPLRELL--VNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADI 268 G ++C P++ +E L E + + + ++ + + + V + +L ++A + Sbjct: 175 CIGSVSLCFPYNGLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKV 234 Query: 269 SLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 S+ + +LKL GDV+ K D I V+ T+ G ++ + ++I + Sbjct: 235 SINVEDLLKLEVGDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAV 289 >UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF88_BREBN Length = 455 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 87/238 (36%), Gaps = 14/238 (5%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M +LSQ EIDALL ++ V+DE A + D+ + + AL I Sbjct: 1 MSRDMLSQDEIDALLRANNLVEDEEEAVSAVTQDVAEF-------LSPFEQDALGEIGNI 53 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 L LL + DIT + + E P+P +++ + +G L+V Sbjct: 54 SFGSAATALSTLLSQKVDITTPTVSVVNVDELESEFPIPHVAVHVEYTDGFKGINLLVIR 113 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE- 178 + D + GGDGR + Q +N+M+ A S + + Sbjct: 114 MEDAAVIADLMMGGDGRPASTEMSELHISAVQEAMNQMMGSAATSMSTIFNQFINITPPG 173 Query: 179 YVRSEMQVKFTNITTSPND-IVVNTPFHVEIGNL----TGEFNICLPFSMIEPLRELL 231 ++ + S +D +V F +++G LP S + + + L Sbjct: 174 IDVMDLAQGKGGDSFSDDDSPLVKVSFRLKVGEHGELIDSNIMQLLPLSFAKKMIDRL 231 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + +IL L+ G ++ ++K + + V+ + + ++ Sbjct: 376 LHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVVVIDE 435 Query: 312 QYALRIEHLINPILN 326 + +R+ +I+ I Sbjct: 436 NFGVRVTDIISQIDR 450 >UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion protein n=2 Tax=Bacteria RepID=A9KNE6_CLOPH Length = 401 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 84/266 (31%), Gaps = 21/266 (7%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQ EI+ALLNG E A + + + AL ++ Sbjct: 2 DGMLSQEEINALLNGMGTENVETAADLES--------------LTDSEIDALGEMSNISM 47 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPS 121 L +L+ + IT + + + P + + + L G ++V Sbjct: 48 GTAATTLSSLVNQKVTITTPKVCYAEWEDLLSAYDRPCVFIQIYYKDGLDGNNILVLKEK 107 Query: 122 LVFIAVDNLFGGDG-RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 V I D + GGDG + + + +N+M+ A S + + Sbjct: 108 DVKIITDLMMGGDGLNSEGDLTELHLSAISEA-MNQMMGSASTSLSSMLEKKVDITPPVA 166 Query: 181 RSEMQVKFT---NITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPL 236 + +I V F + IG+ + E PF L E + Sbjct: 167 SIVDIPEVIDGGDIAEFLKSRFVKVSFRMVIGDLVDSELMQLYPFDFARELYEQFMKYTE 226 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELV 262 + D + + V +E Sbjct: 227 TETNAADGYSKPKKEKTVTPDPVETS 252 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 89/300 (29%), Gaps = 37/300 (12%) Query: 40 PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP 99 N++ + L A+ + L ++L + DIT I E Sbjct: 122 LNSEGDLTELHLSAISEAMNQMMGSASTSLSSMLEKKVDITPPVASIVDIPEVID----- 176 Query: 100 TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLK 159 G V ++ + GD ++ F + + + +K Sbjct: 177 -----------GGDIAEFLKSRFVKVSF-RMVIGDLVDSELMQLYPF-DFARELYEQFMK 223 Query: 160 ------LALEGYSDAWKAINPLEVEYVRSEMQVKFTN---------ITTSPNDIVVNTPF 204 A +GYS K + + V + FT + Sbjct: 224 YTETETNAADGYSKP-KKEKTVTPDPVETSNNNSFTQDIGKNMNMQTPQMQPQMAQMQGM 282 Query: 205 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVAN 264 ++ + G +P M++ + + +N+ + LE+ Sbjct: 283 SLQGMAMPGMSMQQVPQGMVQNVNIAPAQFQPFVNTGSPLLQTENI-DLLLDVPLEVTVE 341 Query: 265 FADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 S + +IL PG ++ + + + I V+G V + + + +R+ +I Sbjct: 342 LGRTSKSIREILDFAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEAFGIRVTDIIK 401 >UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWF9_ALIAD Length = 381 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 54/386 (13%), Positives = 108/386 (27%), Gaps = 78/386 (20%) Query: 1 MGDS--ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M D LSQAEIDALL + + + Q R+ + + L I Sbjct: 1 MVDDEMKLSQAEIDALLRAGAAEQAASR--------------DRQERLTADEIDVLGEIG 46 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIH-LKPLRGTGLVV 117 L +LL R DIT + I P E P P L + + L+GT + Sbjct: 47 NICFGSAATSLSSLLGRRVDITTPVVSILPRSEVESRFPTPYVLVQVDFTEGLQGTNALA 106 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGR-EFTHTEQRV----------INRMLKLAL---- 162 D + G + T G E + + + ++++ + Sbjct: 107 IEIEDARRIADLMMGREPSESTGELGELELSAVGEAMNQMMGSAATAMSQLFGRYINISP 166 Query: 163 ----------EGYSDAWKA---INPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPFHVE- 207 + A+ + +E E + + P + V Sbjct: 167 PSVRVVTFTPDEAQAAFGPAEELVNVEFRLHVHELIDSHIMQLMPIPFARELVRSMQVHT 226 Query: 208 ----------IGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDN-------- 249 G+ + R+ Sbjct: 227 DAIVPEPREGDERRDGDAPVSAGAEARGKNRDDAQAANRGREDEGPSVAVRRPAFPDFDE 286 Query: 250 -----------LVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 + + L + + +IL+L PG +L ++K + + +V Sbjct: 287 GVTPRDARPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSILELDKLAGEPVDIYV 346 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLIN 322 + + + ++ + +R+ ++ Sbjct: 347 NQKKIAIGEVVVIDENFGVRVTDIVQ 372 >UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSG7_BACS4 Length = 398 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 92/239 (38%), Gaps = 9/239 (3%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EI+ALLNG + +D+ ES I D + AL I Sbjct: 1 MSD-MLSQEEINALLNGINLDEDDKDTEEKQESTINIEDY-----LSSIEQDALGEIGNI 54 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 L LL + DIT + I E + P P +++ + G L+V Sbjct: 55 SFGSSATALSTLLNQKVDITTPRVSIVKSSELDQQFPKPHIAVSVQYTVGFEGMNLLVIK 114 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE-VE 178 + I D + G DG + G Q +N+M+ A S + + + Sbjct: 115 NTDAAIIADLMLGNDGTNAGEELGEMQISAVQEAMNQMMGSASTSMSQIFNKRVDISPPD 174 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPL 236 + ++ +T +D+++ F +++G + + + + + + L+NP Sbjct: 175 VEQLNLKEDPDKVTFPDDDVMLQISFDLKVGTLIDSKIMQLVSVEFAKDMVDQLLNPEP 233 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 25/288 (8%), Positives = 79/288 (27%), Gaps = 41/288 (14%) Query: 44 RRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN 103 + ++ A++ + + + + DI+ + E + P Sbjct: 135 EELGEMQISAVQEAMNQMMGSASTSMSQIFNKRVDISPPDVEQLNLKEDPDKVTFPD--- 191 Query: 104 LIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALE 163 ++ I+ D G T + +++ + + Sbjct: 192 ---------------DDVMLQISFDLKVG--------------TLIDSKIMQLVSVEFAK 222 Query: 164 GYSDAW---KAINPLEVEYVRSEMQVKFTNIT----TSPNDIVVNTPFHVEIGNLTGEFN 216 D + I + + Q +T N+ + Sbjct: 223 DMVDQLLNPEPIEDITEKDANVNTQPVEETVTQQAFPQTNEQPQMDATNQHQSARQEPQF 282 Query: 217 ICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL 276 + + + E+ + N + + LE+ + IL Sbjct: 283 VSNGSRLPDRSAEVQPAAFSNFETPQLGNNEAKNLDMLLDIPLEVTVELGRTKRSIKDIL 342 Query: 277 KLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 +L G ++ ++K + + V+ + + ++ + +R+ +++ Sbjct: 343 ELTQGSIIELDKLAGEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVS 390 >UniRef50_Q1YLL0 Possible flagellar motor switch protein fliM n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YLL0_MOBAS Length = 348 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 100/315 (31%), Gaps = 4/315 (1%) Query: 19 SEVKDEPTASVSGESDIRP-YDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSP 77 S V+ +P + S RL L+ + E +A + + S Sbjct: 31 SAVEPDPMSQTEQISGADVGERLRNAAEFEPRRLPRLKHMAETWAASAATKISAIAGASL 90 Query: 78 DITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRF 137 D+T+ + E T + R G + + + LF + Sbjct: 91 DLTLREVESDFGPELDEAEDDGTMYAPLSSPRFRSPGYAMLDHEALEALISALFAAEPSP 150 Query: 138 PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPND 197 P ++ ++ L + ++ I L + + D Sbjct: 151 PGTPPRTPT-DLDRSIVKLGLATIADSALSVFEMIGELRLSVGNIINAAELGEQLAGETD 209 Query: 198 IVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHS 257 + F + + +L+ LP ++ P L PP + +++W + + S Sbjct: 210 RFILFRFDLTVASLSTTITFALPGALFAPHLRFLREPPKMPPPDREESWSNAIKESFAKS 269 Query: 258 QLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYAL 315 L L A + L I GD +P++ I + P+ + G Y + Sbjct: 270 DLRLSAIVTKKKIDLGTIAGFAVGDTIPLDVSANSLIAIECEDQPLFRAHMGRSRDSYVV 329 Query: 316 RIEHLINPILNSLNE 330 RIE I+P +++ Sbjct: 330 RIEERIDPAEEFIDD 344 >UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ED81_9LACO Length = 409 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 48/405 (11%), Positives = 113/405 (27%), Gaps = 80/405 (19%) Query: 1 MGDSILSQAEIDALLNGDSEVKDE-------------PTASVSGESDIRPYDPNTQRRVV 47 M D LSQAEIDAL+NG S ++ + + + + + ++ Sbjct: 1 MSDG-LSQAEIDALMNGGSAAAEDDSKEEKVEEKTEEQSEAEIEKEAVEDATLDVDDEII 59 Query: 48 -----RERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TN 101 + R+ + + L ++L IT + + + P Sbjct: 60 AGMDEQARMDLIGEVGNISMSQAATTLSSILNHRVSITTPRVTKIRFASLMEGIKTPKVA 119 Query: 102 LNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVE--GREFTHTEQRV------ 153 + + + + GT L++ I D + GG G E E + + + Sbjct: 120 TTVEYKEGVIGTNLMLLQVRDASIIADLMMGGPGNAKEDAEFGDLELSAVAEAMNQMIGS 179 Query: 154 ----INRMLKL---ALEGYSDAWK-----AINPLEVEYVRSEMQVKFTNITTSPNDIVVN 201 + M+ L W + + + + + + ++I+ Sbjct: 180 ASTSMATMINRKVDILPPMVKLWGEPDNISYDGINPDSIVYRISFNLDVEGLIESEIMQI 239 Query: 202 TPFHVEIGNLTGEFNICLPFSMIEPLRELLV----------------------------- 232 + + Sbjct: 240 FTKEMVNDIAAAMMADKATVVNDREVPAEEQPEPAPAAAPTPQPQPQAQPQPQAAPQPAP 299 Query: 233 ---------NPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDV 283 + P + + + + + L L + +IL N G V Sbjct: 300 QPKQPPVEVSQPSFQTLDGHAQVEGDNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSV 359 Query: 284 LPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + +EK + + ++G + + +N + +RI ++++ Sbjct: 360 IELEKLTDEPLDILLNGKLIAQGEVVVINDNFGVRITNILSQSQR 404 >UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clostridia RepID=A6TRP4_ALKMQ Length = 393 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 35/283 (12%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EIDALL+G++ + + + + Sbjct: 1 MSD-MLSQEEIDALLSGNANTPSDNDGI--------------DEGFTDDEKDVIGEVGNI 45 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 L LL + IT + + + E A+ P+P +++ + + L G L++ Sbjct: 46 SMGTAATTLSTLLGQKVKITTPRVSVLTFEEIAQEYPLPFVAVDVKYKEGLEGVNLLILR 105 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPL 175 V I D + GG+G + + +N+M+ + S+ + + Sbjct: 106 EKDVKIITDLMMGGEGVASEE----PLSELHLSAIGEAMNQMVGSSSTSLSEMFGKKIDI 161 Query: 176 EV------EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLR 228 + +F SP+ V F + IG + E +P + + Sbjct: 162 SPPHAFTLDLTSDVNAPEFIEHFQSPDKNFVRIAFRMVIGELIDSEIMQLIPLDFAKEIT 221 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLR 271 L+ ++ ++ + + + H++ AN + + Sbjct: 222 STLLRG----AQYTEEMPSEEIPNERMHTEPIAHANSEENRIT 260 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 30/290 (10%), Positives = 82/290 (28%), Gaps = 27/290 (9%) Query: 41 NTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPT 100 ++ + L A+ + L + + DI+ + ++ P Sbjct: 123 ASEEPLSELHLSAIGEAMNQMVGSSSTSLSEMFGKKIDISPPHAFTL---DLTSDVNAPE 179 Query: 101 NLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL 160 + + V + G+ ++ + Sbjct: 180 FIEHFQSP----------DKNFV-RIAFRMVIGELIDSEIMQLIPL-----DFAKEITST 223 Query: 161 ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFH--VEIGNLTGEFNIC 218 L G + + E M + S + + + + + Sbjct: 224 LLRGAQYTEEMPSE---EIPNERMHTEPIAHANSEENRITQEKSNQQPHLSDHDAPVQQR 280 Query: 219 LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKL 278 S+ + + ++ +N+ +Q L + ++S++L+ Sbjct: 281 QQPSLENSKINVQPVQFQSFDQQSNRGLPENIAL-IQDVPLSVTVELGRTVKKISEVLEF 339 Query: 279 NPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 PG ++ +EK + + V+G V + ++ Y +RI ++ P Sbjct: 340 GPGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGIRITDIVAPAKR 389 >UniRef50_P57182 Flagellar motor switch protein fliM n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=FLIM_BUCAI Length = 315 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 123/288 (42%), Gaps = 4/288 (1%) Query: 44 RRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN 103 + + + ++ LE IN F+ F N L+ S ++ +I+I + LN Sbjct: 19 SKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRCLN 78 Query: 104 LIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG-REFTHTEQRVINRMLKLAL 162 LI + P + ++F + + +D LFGG G F + R+ T TE V +++K Sbjct: 79 LIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFIT 138 Query: 163 EGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS 222 +S+ +K E+ + ++ F N + + F+ +I N FN +P S Sbjct: 139 NAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINCFNFKINNTEIFFNFLIPKS 198 Query: 223 MIEPLRELLVNPPLENSRNE---DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLN 279 +++ E ++ +N + + + ++ +++ IS+ +I L+ Sbjct: 199 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 258 Query: 280 PGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 GDVL I+KP++I + + Y N Q + IE I+ S Sbjct: 259 IGDVLSIKKPNKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSES 306 >UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion protein n=4 Tax=Bacteria RepID=B8FTQ8_DESHD Length = 417 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 27/241 (11%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MG+ +LSQ EIDALL G+ + + E A+ I Sbjct: 1 MGNGMLSQEEIDALLGGNQQTDPPAQKEPAVE-------------FSDMERDAIGEIANI 47 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-LIHLKPLRGTGLVVFS 119 L LL + +IT + + + ++ P+P+ + + + + G+ L++ S Sbjct: 48 SMGTAATTLSQLLGKKVEITTPKVDMASAEQIRKDYPIPSVIVDVRYKAGIEGSNLLILS 107 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPL 175 + VD + GG G P E + +N+M+ A S + ++ + Sbjct: 108 QRDGAVIVDLMMGGTGENPPT----ELSELSISGISEAMNQMMGSAATSMSTMFNSVVDI 163 Query: 176 E-VEYVRSEMQVKFTNI---TTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLREL 230 + V ++M + +I ++ +V F + + ++ +P + + + Sbjct: 164 TPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMVVEDVIDSILVQVIPIHVAKGMVGK 223 Query: 231 L 231 L Sbjct: 224 L 224 Score = 93.9 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 42/103 (40%), Gaps = 3/103 (2%) Query: 226 PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 P + + + + ++NL + L++ + +IL+L PG V+ Sbjct: 308 PPTPVQPAQFVPLKPGDPLHGQENLEL-ILDVPLQVSVELGKAKKTIKEILELGPGSVIE 366 Query: 286 IEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 +++ + + V+G + + +N + +RI ++ P Sbjct: 367 LDRLAGEPVDMIVNGKLIAKCEVVVINETFGIRITDIVQPGER 409 >UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clostridium thermocellum RepID=A3DCN7_CLOTH Length = 406 Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 19/256 (7%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 + +LSQAEIDALLNG S +E ++ + + + AL I Sbjct: 2 EDMLSQAEIDALLNGSSSEGNEENSANEE--------------LTSQEIDALGEIGNISM 47 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL-PVPTNLNLIHLKPLRGTGLVVFSPS 121 L +LL + IT + + + E A+ + + + + L G L++ Sbjct: 48 GTSATTLNSLLGQRVVITTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKED 107 Query: 122 LVFIAVDNLFGGDGRFPT-KVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE-VEY 179 + D + GGDG ++ + + +N+M+ A S + + + Sbjct: 108 DAKVITDLMMGGDGSNKEGELTDLHLSAISEA-MNQMIGSAATSMSSMFNKRIDISPPKV 166 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLEN 238 + D +V F + IG + + LP + + ++N E+ Sbjct: 167 FPMTLDAAVPEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPED 226 Query: 239 SRNEDQNWRDNLVRQV 254 ++ ++ + V Sbjct: 227 NQVIEEVAASAVQEPV 242 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/295 (9%), Positives = 75/295 (25%), Gaps = 21/295 (7%) Query: 41 NTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP- 99 N + + L A+ + + ++ + DI+ + P Sbjct: 123 NKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAVPEAEFPR 182 Query: 100 ------TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRV 153 ++ + + + + V N+ +E + V Sbjct: 183 GDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAAS----AV 238 Query: 154 INRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTG 213 + E Y A + P + + Q E Sbjct: 239 QEPVAGQHNEQYYHAQPSQQPYQQPPQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPPRQ- 297 Query: 214 EFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLS 273 + + + + L++ + + Sbjct: 298 -------NDGYRNPINVQPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIK 350 Query: 274 QILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 IL+ PG ++ ++K + + V+G + + ++ + +RI +++P Sbjct: 351 DILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPSKR 405 >UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion protein n=15 Tax=Bacteria RepID=C6D2V9_PAESJ Length = 421 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 11/234 (4%) Query: 2 GDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 LSQ EIDALLN + E +S S S+ + D + AL I Sbjct: 3 SKDYLSQEEIDALLNQTAS---ELASSQSQASEYQLSDFLSPI-----EQDALGEIGNIT 54 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSP 120 L LL + DIT + + A P P +++ ++ +G +V Sbjct: 55 FGSAATALSTLLGKKVDITTPQVTFIKREDLANEFPKPHVAVSVQYVDGFQGINSLVIKT 114 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE-Y 179 + D + GG+G + Q +N+M+ + S + + Sbjct: 115 KDAQVIADLMLGGEGDVTLQELNEIHISAVQEAMNQMMGSSATSMSTIFNRFVNISPPGI 174 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLV 232 ++ D+ + F + IG+ + LP + + +L+ Sbjct: 175 DILDVDSGGGMGQLPTEDVFIKISFRLTIGDLIDSTIMQLLPVPFAKQMVAILM 228 Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 30/322 (9%), Positives = 89/322 (27%), Gaps = 24/322 (7%) Query: 11 IDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLF 70 I++L+ + + + GE D+ T + + + A++ + + Sbjct: 107 INSLVIKTKDAQVIADLMLGGEGDV------TLQELNEIHISAVQEAMNQMMGSSATSMS 160 Query: 71 NLLRRSPDITVGAIRIQPYHEF--ARNLPVPTNLNLIHL-----KPLRGTGLVVFSPSLV 123 + R +I+ I I LP I + T + + Sbjct: 161 TIFNRFVNISPPGIDILDVDSGGGMGQLPTEDVFIKISFRLTIGDLIDSTIMQLLPVPFA 220 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 V L G ++ A+ + Sbjct: 221 KQMVAILMG---DVEEEIAAAPAAPVPAPEPTPAPAAAVTPAPAPAPQQAYQDPYQQAPA 277 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNED 243 N +P ++ + ++P+ ++ Sbjct: 278 AAAAQYNQPYNPYQQSAAFDIQMQPQGPQTYGHAANRNVNVQPV------QFANFNQAPY 331 Query: 244 QNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPV 301 + + + L++ ++ IL+L+ G ++ ++K + + V+ + Sbjct: 332 VQTDETNLNLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLI 391 Query: 302 LTSQYGTLNGQYALRIEHLINP 323 + ++ + +R+ +++ Sbjct: 392 AKGEVVVIDENFGVRVTDIVSQ 413 >UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicutes RepID=A4IMA6_GEOTN Length = 393 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 79/242 (32%), Gaps = 18/242 (7%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EIDALL G + P +D T A+ I Sbjct: 1 MNDGMLSQDEIDALLRGMDDSDHVPA----------LHDIFTPL-----EQDAIGEIGNI 45 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVFS 119 L LL + +IT ++ + A P P + + + + GT L+V Sbjct: 46 SFGSSATALSTLLNQKVEITTPSVSVVERKRVADEFPRPYVAIQVNYTEGFLGTNLLVIE 105 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE- 178 + D + GGDG G Q +N+M+ A S + + Sbjct: 106 QQDAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPT 165 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPLE 237 ++ D + F ++IG + LP + L L+ E Sbjct: 166 LHLLDLTEGKGLEYLPDEDFFIKVSFRLKIGALVDSNIMQLLPIDFAKELVTHLLGSSAE 225 Query: 238 NS 239 + Sbjct: 226 AA 227 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 28/286 (9%), Positives = 76/286 (26%), Gaps = 38/286 (13%) Query: 50 RLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEF--ARNLPVPTNLNLIHL 107 +L A++ + + + + DI+ + + E LP + Sbjct: 132 QLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPTLHLLDLTEGKGLEYLPDEDFFIKVSF 191 Query: 108 KP-----LRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLAL 162 + + + + V +L G +E E Sbjct: 192 RLKIGALVDSNIMQLLPIDFAKELVTHLLGSSAEAAGTLEKEE----------------- 234 Query: 163 EGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS 222 I+P V E + + + + + G Sbjct: 235 --------NIDPSSAGAVPREEPQPAPAYAHASDGVFSSAASRFTNETVGGR----SKEE 282 Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 R + E + + L++ + +IL+L+ G Sbjct: 283 ESVAERHIQAADFAEFDDPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSAGS 342 Query: 283 VLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 ++ ++K + + V+ + + ++ + +RI +++ Sbjct: 343 IIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVRITDIVSQNDR 388 >UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6B2_THEAS Length = 375 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 48/391 (12%), Positives = 109/391 (27%), Gaps = 87/391 (22%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MG+ LSQ EIDALL+G P+ S + ++ L + Sbjct: 1 MGEDFLSQDEIDALLSGGKPSGGGPSGGGSIGG---------------DEMEILREVAST 45 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRG----TGLV 116 A + L RS + V + P + + + + G + Sbjct: 46 AASSVGNVMGMLAGRSVSVNVTNCEVAPQNSVVEKVGAMSIF--VFSMKWDGLDDAPARL 103 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 V S D + GGD + + + Q ++++ AL S K Sbjct: 104 VTSDKGALTLADLMMGGDAKELPEEPNDLYLSASQEGFSQLIGSALTSISGLLKG----- 158 Query: 177 VEYVRSEMQVKFTNITTSP------NDIVVNTPFHVEIGNLTG-EFNICLPFSMIEPLRE 229 + + + + P D V + ++ + LP + L E Sbjct: 159 AKLAPKDTSGGLADFSWVPFDQLAVTDEAWIAGMEVAVDDVAPFPLFLVLPAPNAKDLAE 218 Query: 230 LLVNPPLENSRNEDQN-------------------------------------------- 245 + + + + Sbjct: 219 RIREVSVPKEEPKQEARAPQAAAAPRAPQPAAPARDEGFYAPRSASISTAPVDVRPAEFA 278 Query: 246 --------WRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 + + + + + + +IL ++PG V+ + + + + Sbjct: 279 PLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVDVL 338 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V+G + + ++ + +R+ +++ Sbjct: 339 VNGKLIARGEVVVIDENFGVRVTEIVSRAER 369 >UniRef50_Q8GKQ6 FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP RepID=Q8GKQ6_9THEM Length = 165 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 5/163 (3%) Query: 168 AWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPL 227 AW +++P +E +F I S +++V+ F V G + G ++C P S+IEP+ Sbjct: 1 AWMSVHPFIPVVESTETNPQFVQIVPS-SEMVLAITFFVSFGKVEGYMSLCWPSSVIEPI 59 Query: 228 RELLVNPPLENSRNEDQNWR--DNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP 285 E L + ++ + L +Q ++++++A + L L +IL L GDV+ Sbjct: 60 GEKLTTQSWFKVKQKEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVIR 119 Query: 286 IEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 +++ + I V+G + G G YA++I +I Sbjct: 120 LKEHYDEPIRVEVNGRTKFLGKPGQYKGNYAVKITEVIEEPKE 162 >UniRef50_Q98HE6 Flagellar motor switch protein; FliM n=2 Tax=Mesorhizobium RepID=Q98HE6_RHILO Length = 315 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 93/279 (33%), Gaps = 6/279 (2%) Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 + ER A + L + L + + A+ + E + ++ + Sbjct: 35 MAERAAPLLQKSLTSELGVPVTVDLRAVEVSRVAEARSRAGDTFAMTIVASSTSSDAMTL 94 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 V + I V LFGGD P R+ + E V + + + + + + L Sbjct: 95 VIDAPAIAIMVCTLFGGDPETPASPIERDLSQIEVDVSTMLFQQVAQALNGSGRRSLDLR 154 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + R+ + + + +G + +P ++ R+ + Sbjct: 155 LPVPRAMSGTEAKRHVLRDG-AALRIVLGISTPADSGTVTVTMPQRIVLASRDSAASTAG 213 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIA 294 ++ WR+ +V S + L A L L + L G V+ ++ R Sbjct: 214 DDHGPS---WRERFSEEVMRSTVALEATMPLARLTLGDLASLEVGQVIDFDETAQSRARL 270 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQP 333 G + ++G L Y +RI H + + ++ P Sbjct: 271 SARGQTLFVCEFGKLGQNYTVRIRHPFDAGQDFIDGLMP 309 >UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridiales RepID=C4ZAN3_EUBR3 Length = 404 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 97/264 (36%), Gaps = 25/264 (9%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D +LSQ EI+ALLN + E D A+ I Sbjct: 2 DGVLSQEEINALLNNNDAADSSDEILTESEKD------------------AIGEIANISM 43 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPS 121 LF+L+ R +I+ + + + P + + + + L G+ ++V Sbjct: 44 GTAATTLFSLVNRRVEISTPVVSFSNWDKIVDEYEKPCVFIKIGYTQGLNGSNILVLKEK 103 Query: 122 LVFIAVDNLFGGDGRF-PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV--- 177 V I D + GGDG ++ + + +N+M+ + S + Sbjct: 104 DVKIITDLMMGGDGTNINGEIGELHLSAISEA-MNQMMGSSATSLSSMLNRTIDISPPIA 162 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPL 236 E V + + I + ++ V FH+EIG+ + E P + ++ + + + Sbjct: 163 EVVDLKNTLNEGEIDSFLSEEFVKISFHMEIGDLVDSEIMQLYPPAFVKEMCKGVSQNME 222 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLE 260 ++++ ++ + Q + ++ Sbjct: 223 LDTQSVTEDVPQSSNTATQAAPIQ 246 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 86/295 (29%), Gaps = 39/295 (13%) Query: 50 RLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKP 109 L A+ + L ++L R+ DI+ + + + L+ + Sbjct: 128 HLSAISEAMNQMMGSSATSLSSMLNRTIDISPPIAEVVDLKNTLNEGEIDSFLSEEFV-- 185 Query: 110 LRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW 169 GD ++ + M K + Sbjct: 186 ---KISFHMEI------------GDLVDSEIMQLYPP-----AFVKEMCKGVSQNMELDT 225 Query: 170 KAINPLEVEYVRSEMQVKFTNITTSP--------------NDIVVNTPFHVEIGNLTGEF 215 +++ + + Q N+ ++N+ + + G Sbjct: 226 QSVTEDVPQSSNTATQAAPIQQPQDSGSMNNASANSQGMINENMMNSNMNSQNMMNQGMM 285 Query: 216 NICL-PFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQ 274 N + +MI + +Q ++ + + LE+ +S+ Sbjct: 286 NQNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKSISE 345 Query: 275 ILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 IL PG ++ + K + I V+G V + + + +RI ++N +N+ Sbjct: 346 ILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSKINT 400 >UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion protein n=3 Tax=Clostridiales RepID=C7ILI0_9CLOT Length = 400 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 15/246 (6%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MGD +L+QAEIDALLNG S ++ A+ S + + + AL I Sbjct: 1 MGD-MLTQAEIDALLNGTSSSEEPDEATGSNS---------NTETLTSQEIDALGEIGNI 50 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVFS 119 LF LL + IT + + + E +++ + + + L G+ L++ Sbjct: 51 SMGTSATTLFTLLSQKVTITTPNVTLSTWEELSKSYSSQYVAVKVEYTDGLIGSNLLILK 110 Query: 120 PSLVFIAVDNLFGGDG-RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 V I D + GG+G + + + + +N+M+ + S + + Sbjct: 111 QDDVKIITDLMMGGEGVKIEGDLTDLHLSAISEA-MNQMIGSSATSMSSMFSKRIDISPP 169 Query: 179 YVRSEMQVKFTNIT-TSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNPPL 236 + P++ +V F + +GN + E LP + L L+N Sbjct: 170 KAYTVSFDSSDPYGEFRPDEYLVKIAFKMVVGNLIDSEIMQLLPIKFAKELVSSLLNSTE 229 Query: 237 ENSRNE 242 + + Sbjct: 230 DKRDSA 235 Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 87/286 (30%), Gaps = 32/286 (11%) Query: 50 RLQALEIINERFARHFRMGLFNLLRRSPDITVGAI------RIQPYHEFA-RNLPVPTNL 102 L A+ + + ++ + DI+ PY EF V Sbjct: 137 HLSAISEAMNQMIGSSATSMSSMFSKRIDISPPKAYTVSFDSSDPYGEFRPDEYLVKIAF 196 Query: 103 NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLAL 162 ++ + + + V +L + + R+ + + + Sbjct: 197 KMVVGNLIDSEIMQLLPIKFAKELVSSLL------NSTEDKRD-SAIPEPPRTPEPPQQV 249 Query: 163 EGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS 222 +S+ I P ++ +MQ PN F G P S Sbjct: 250 PSFSNQNSYIEPPVQPVMQPQMQQPVMQQQAMPN-----FGFD---GGYQEPQRQRSPVS 301 Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 ++P++ + L + + + L++ + IL+ G Sbjct: 302 -VQPVQFQAFDDGLSAT-------EKKNISLIMDLPLQVTVELGRTQKLIKDILEFGSGS 353 Query: 283 VLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V+ ++K + + V+G + + ++ + +RI +I+P Sbjct: 354 VIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKR 399 >UniRef50_UPI0001910677 flagellar motor switch protein FliM n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001910677 Length = 147 Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 141/147 (95%), Positives = 145/147 (98%) Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR Sbjct: 1 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 60 Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVP 300 +EDQNWRDNLVRQVQHS+LELVANFADI LRLSQILKL PGDVLPIEKPDRIIAHVDGVP Sbjct: 61 HEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPDRIIAHVDGVP 120 Query: 301 VLTSQYGTLNGQYALRIEHLINPILNS 327 VLTSQYGT+NGQYALR+EHLINPILNS Sbjct: 121 VLTSQYGTVNGQYALRVEHLINPILNS 147 >UniRef50_Q0G106 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G106_9RHIZ Length = 321 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 105/302 (34%), Gaps = 14/302 (4%) Query: 40 PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP 99 + + +L L I E A + L L +T + + + Sbjct: 17 LKSASELEPSKLHRLAAIVEETAEELTLALNRLSIDKVAVTFRDFEMGQGADGIGDAGDD 76 Query: 100 TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLK 159 + K + +L + + FG + + R T ++ ++ K Sbjct: 77 VLFATLTSKRFGRPAYLAAPETLADVCISAYFGA--KPAERAGKRALTDLDRALVKTTFK 134 Query: 160 LALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPND-IVVNTPFHV-EIGNLT----- 212 +E ++ A+ I+ + + + PN V+ F + + G+ + Sbjct: 135 TFVETFASAFAPIDEAGLAAGGFVECEELDELLGGPNAGRYVSMTFGLSKAGDRSATAEE 194 Query: 213 ---GEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADIS 269 + LP S + R +L P + D+ W + +VR + S L L A A Sbjct: 195 EPLSTLTLALPSSYLSLHRRVLSEPLPLPQPSPDETWSEAMVRNFEKSGLHLEAVLARKQ 254 Query: 270 LRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNS 327 + L+++ G L ++ + I +G P+ SQ G G Y R E ++P Sbjct: 255 VPLAEVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSYVARFEEAVDPTQEF 314 Query: 328 LN 329 +N Sbjct: 315 IN 316 >UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ/HrcQ n=2 Tax=Cystobacterineae RepID=Q1D9K8_MYXXD Length = 467 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 107/321 (33%), Gaps = 26/321 (8%) Query: 20 EVKDEPTASVSGESDIRPYDPNTQRRVVR------ERLQALEIINERFARHFRMGLFNLL 73 E S E RP+ +V R ERL+ L + A L L Sbjct: 34 ESPASQEPPASQEQRWRPFAFRNLEKVSRAQGLLAERLRWLTP-ADGTAVAVAARLTELF 92 Query: 74 RRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGG 133 +TV +++++P E R L PT L ++ L+G ++ +L +AVD L GG Sbjct: 93 DAEVRLTVESVQVRPMAELRRFLGDPTFLAVLAPGALQGRAVLEVELALAHVAVDLLLGG 152 Query: 134 DGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITT 193 G R T E+ V+ ++ L+ +A P V + Sbjct: 153 AGETVG---LRPLTDIEEGVMAYVVLEGLKLLVPGLQAAVP-RPRLDGVARGVDEVSARL 208 Query: 194 SPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQ 253 + ++ +G +G + +P ++++ + + D + + Sbjct: 209 GDDGPMLAVHLQATLGPHSGMVRLVVPAAVLDAAEPAVESTQRRARGKADL---EAFASR 265 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVL-------PIEKPDR--IIAHVDGVPVLTS 304 + + L A + + L DVL +K + V + Sbjct: 266 LSAVRSWLRAEIGSAEISGQDLASLRVKDVLLVDALSARTDKGEAGTARLRVGKGTAGWA 325 Query: 305 QYGTL---NGQYALRIEHLIN 322 + +G+Y RI + Sbjct: 326 EAEVFVGEDGRYQARITDFVQ 346 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 231 LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP- 289 L PP D + + + L++ A + + Q++ L G VL + + Sbjct: 374 LDVPPELEGAALDDVSKPDGSDLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNRGP 433 Query: 290 -DRIIAHVDGVPVLTSQYGTLNGQYALRI 317 + + V+G V + L GQ +RI Sbjct: 434 GEPVELSVNGKVVARGELVELEGQLGVRI 462 >UniRef50_Q11LL7 Surface presentation of antigens (SPOA) protein n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LL7_MESSB Length = 311 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 86/282 (30%), Gaps = 16/282 (5%) Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 +++L ++ + F F L + + + + E L +I Sbjct: 38 MRSLPVLQDIFQAKFSAPLV--------LDIAGVEVVRLAELKPEPDSFDALVVIPATDS 89 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK 170 R + + + V L GGD P R + E V + + + Sbjct: 90 RDALTMRLDAQALSLLVSILLGGDPDIPPSPLDRPPSRIELDVARLVFGAFAQALNGTGS 149 Query: 171 AINPLE-VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRE 229 L F + F + G ++G LP +I R Sbjct: 150 RSLGLRLPAPQPLAGPGDFKRFLVRDG-PGIRIAFSLGAGPVSGILTAWLPHRIILKAR- 207 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--E 287 P E+ W+ +V+ S +++ A L L + L PG VL + Sbjct: 208 ---APAAEDDSPAHTQWKQRFGEEVRRSTVQVTATIPLTKLPLGALANLKPGQVLELQEN 264 Query: 288 KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 P V PV ++G L Y +RI + L+ Sbjct: 265 APRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDDRQAVLD 306 >UniRef50_Q8KA39 Flagellar motor switch protein fliM n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=FLIM_BUCAP Length = 311 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 129/283 (45%), Gaps = 4/283 (1%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + + ++ LE IN++F + M + ++ + ++ ++I Y +N N + Sbjct: 29 LDQNEMKKLEKINKKFIQKIIMIFSSFIKSNIELNFYTVKINSYTNDDKNF-KHLYANSL 87 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVE-GREFTHTEQRVINRMLKLALEG 164 ++ L + FSP+ + + +D LFGG G +++ +E T+TE + +++ ++ Sbjct: 88 KIETLEKKSFIFFSPNFLSVFIDFLFGGKGNSIIRMDIKKEITYTEHVINKKIVGFIIDA 147 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMI 224 Y ++ K ++++++ +K ND+ + F + + +I +P S+I Sbjct: 148 YCESCKDFFYIDIKFLDF-NIIKLNKHFFYTNDLFITNYFSFNLNGIKIFLSILIPVSII 206 Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQ-VQHSQLELVANFADISLRLSQILKLNPGDV 283 + + ++N +N ++ ++N + + + +L++ + L GDV Sbjct: 207 KEKNKKIINFLDKNIFSKKTILKENFFIENLSNIELDVTVELIPSYISKHTFDNLREGDV 266 Query: 284 LPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + IE P ++ ++ P+ ++ + + + +E ++ L Sbjct: 267 ITIEDPGKVTVCIEKKPIFLGKHKIFDEKSIIFLEKFLHQNLE 309 >UniRef50_A6BA62 Flagellar motor switch protein FliM n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BA62_VIBPA Length = 168 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 83/131 (63%), Gaps = 1/131 (0%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M D +LSQ EIDALL+G +V D + +D ++Q R+VR R+ LE+INER Sbjct: 1 MTD-LLSQDEIDALLHGVDDVDDIDEPLDNDTEGAVSFDFSSQDRIVRGRMPTLELINER 59 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 FARH R+ LFN+LR++ ++++ +++ + E+ L VPT+LN++ +PL+GT L+ Sbjct: 60 FARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEA 119 Query: 121 SLVFIAVDNLF 131 LVFI VD Sbjct: 120 RLVFILVDKFL 130 >UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKB6_MOOTA Length = 395 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 11/235 (4%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 MGD LSQ EIDALL G ++++ A + + L I Sbjct: 1 MGD-FLSQEEIDALLKGHTDIETAAPAEPEAAAAPEA-------TLSDLEKDTLGEIGNI 52 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-LIHLKPLRGTGLVVFS 119 L +L + IT I+I E + VP L + + L+G+ L++ Sbjct: 53 SMGSAATALSQILNKRVLITTPTIKIMTPEELFASFQVPYVLVEVNFTEGLQGSNLLIIK 112 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE- 178 S I D + GG G T + +N+M+ A + ++ + Sbjct: 113 VSDAAIIADLMMGGSGENVTPELDEIKSSAVAEAMNQMVGSAATSMATIFQRSVKITPPH 172 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLV 232 + + +V F +EI + + +P + + +L+ Sbjct: 173 LTAVNFNNESYTSPWATAQSIVVVCFKMEIEGLVDSQIMQVMPMEIAKDEVRMLM 227 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 247 RDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTS 304 + + L++ R+ IL L PG ++ +++ + + V+G P+ Sbjct: 308 SSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQG 367 Query: 305 QYGTLNGQYALRIEHLINPILN 326 + +N + +RI H++ P Sbjct: 368 EVVIVNENFGVRITHILEPYER 389 >UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria RepID=A5D0K1_PELTS Length = 422 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 87/274 (31%), Gaps = 21/274 (7%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASV----------SGESDIRPYDPNTQRRVVRER 50 M + +L Q EIDALLN P G + E Sbjct: 1 MSNRLLKQEEIDALLNARLAEPALPEEGEYSGVQQPGGTGGNGAGSEQLGANVEMLTEEE 60 Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKP 109 AL I L LL ++ IT + I EF ++ +P + + + Sbjct: 61 KDALGEIGNICMGSAATTLSVLLNQTVSITSPRVTITTMEEFVKSFTIPHMTIYVRFTEG 120 Query: 110 LRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGY 165 L G L+ + D + GGDG ++ + T +N+M+ A Sbjct: 121 LSGYNLLFMKLRDAAVMADLMMGGDGSQASE----DLTEISISAASEAMNQMIGTASTSM 176 Query: 166 SDAWKAINPLEVEYVRSEMQVKFTNI-TTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSM 223 + + R + + + +V F + IGN+ + + + Sbjct: 177 AAMIGRPVNISPPETRIVNKDNEARVFDLVQEEHIVVVWFKMTIGNILDTQIMQVMGINT 236 Query: 224 IEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHS 257 + ++N L+ E+ + ++ + Sbjct: 237 AKEEANFILNRFLQVGSEEEPSLPEDYPSARPDA 270 >UniRef50_B1I5G4 CheC, inhibitor of MCP methylation n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5G4_DESAP Length = 369 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 74/235 (31%), Gaps = 12/235 (5%) Query: 3 DSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62 D IL Q EIDALL V + D L I Sbjct: 2 DKILDQEEIDALLKAGGAKAPGEREGVRKDPAGELTD---------VEKDTLGEIGNICM 52 Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVFSPS 121 L LL + IT + ++P E + VP + + L G+ L+V Sbjct: 53 GSAATTLSALLGQKVSITSPVVTVKPREELLKQFTVPYLAIEVKFTAGLEGSVLLVIEVK 112 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 + D + G DG+ P G +N+M+ + + + R Sbjct: 113 DAAVVADLMMGNDGKNPPPELGEMEISAASEAMNQMIGTSATALAQLVGRTVSISPPRAR 172 Query: 182 S-EMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVNP 234 ++ + ++V F++++G+ + + +LL+ Sbjct: 173 VLQINADAEKVVGEFEAVMVVVSFNMQVGDLIDTSIFQIMTVDTARNEADLLLRG 227 >UniRef50_C6XFK7 Flagellar C-ring protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFK7_LIBAP Length = 318 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 97/300 (32%), Gaps = 13/300 (4%) Query: 39 DPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPV 98 D T ++ +L + ++F + DI+ + + + + Sbjct: 27 DKKTIEKISS----SLGYLYKKF---LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 Query: 99 PTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRML 158 + L + S +LV ++NL G ++ R + E+++ R + Sbjct: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 Query: 159 KLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTS--PNDIVVNTPFHVEIGNLTGEFN 216 + + + T+ N+ V ++ I N+ F Sbjct: 140 AQISAVLNQCISTTQESSPNLEDF-YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 Query: 217 ICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL 276 + +P + L+ S N+ ++ D R+ + + L ++ Sbjct: 199 LIIPQETLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 Query: 277 KLNPGDVLPIEKPDR--IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 L G V+P ++ I +G + + + G + Y +RI IN SL K Sbjct: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 >UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspira RepID=C0R179_BRAHW Length = 360 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 48/372 (12%), Positives = 110/372 (29%), Gaps = 57/372 (15%) Query: 1 MGDSILSQAEIDALLNGDSE---VKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEII 57 M D LSQ EI+ALL G E P AS +G ++ N +++ E Sbjct: 2 MSDGALSQDEIEALLKGADEAFGGDTAPKASSNGGGNVDKQLFNEAAKMIAENQ------ 55 Query: 58 NERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNL-PVPTNLNLIHLKPLRGTGLV 116 L ++ ++ IT + + + L + + + G Sbjct: 56 --------AFSLSSISTKTVSITNITTTVGDVNNLHQMLSGKMVEAKVGYTGSINGNVYY 107 Query: 117 VFSPSLVFIAVDNLFG----GDGRFPTKVEGREFTH----TEQRVINRMLKLALEG---- 164 + + + G ++V F+ ++ + +R Sbjct: 108 FMGENEALVVASLMMGQKEAALNDMVSQVLKEAFSQMVGVSDSALSSRFGGSFTNSPIET 167 Query: 165 --YSDAWKAINPLEVEYVR----SEMQVKFTNITTSPNDIVVNTPFHV------------ 206 DA+ P + V E +V + ++ + Sbjct: 168 SILEDAFSINIPGPLAIVSGSLSIEGEVDNAPYVFALELPLLQSLIGSASNNAAAPAAGG 227 Query: 207 ----EIGNLTGEFNICLPFSMIE--PLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLE 260 + + + P + D N+ + + Sbjct: 228 NASNAGASANNSMAGLVDNQAFDSGPQLGVQHAEFNSLMPASDVQGTGNI-GLLMDVTMN 286 Query: 261 LVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 + ++ + IL L G ++ ++K + + V+G + + ++ + +R+ Sbjct: 287 MTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDENFGVRVT 346 Query: 319 HLINPILNSLNE 330 +INP+ N+ Sbjct: 347 DIINPMDRLTNK 358 >UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clostridium RepID=A6M1D2_CLOB8 Length = 398 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 91/266 (34%), Gaps = 16/266 (6%) Query: 1 MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 M +S LSQ EI+ALL G+ E + + S D + ++ L I Sbjct: 3 MSNSFLSQEEINALLAGEDLSSSEGANTSTESSK---SDEGVITDIDKD---LLGEIGNI 56 Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFS 119 L+ L+ + +IT + + E P L++ ++ + G +++ Sbjct: 57 SMGSASTALYQLINQQVNITTPVVSVTTLREIKEGFETPNIVLDIEYVAGIIGRNILIIK 116 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR----VINRMLKLALEGYSDAWKAINPL 175 + + + GGDG+ + + E +N+M+ A + + + Sbjct: 117 TLDGLVISNLMMGGDGKVGETH---DLSEIEISAVSEAMNQMIGSAATSMATMFGRKVDI 173 Query: 176 EVEYVRSEMQVKF-TNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLVN 233 + + + + +V F + IG+ + P + + ++ Sbjct: 174 SPPTAKVVVDGSIPISEAIPEDQPIVRVSFRMTIGDIVDSNIMQIFPIETAKNIVAIMTG 233 Query: 234 PPLENSRNEDQNWRDNLVRQVQHSQL 259 + +DN + + ++ Sbjct: 234 EDKGKEVAASEPAKDNKKDAIVNKEI 259 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + IL L G ++ ++K + + V+G + + ++ Sbjct: 319 ILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGEVVVVDE 378 Query: 312 QYALRIEHLINPILN 326 + +RI ++++ + Sbjct: 379 NFGIRITNIVSSVER 393 >UniRef50_O54246 Flagellar motor switch protein fliM n=3 Tax=Rhizobiaceae RepID=FLIM_RHIME Length = 315 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 90/276 (32%), Gaps = 4/276 (1%) Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGL 115 + + F L + I R +E L L + L+ Sbjct: 36 ELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAALGDGVLLGDLSLRNWCADFQ 95 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 V ++ V+ L G + + R + E V + E A A Sbjct: 96 VGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVALPVFHGIAEVLRTAVNAPGGF 155 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVN-TPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 E R + D+ + +G + F++ +P S + R ++ Sbjct: 156 EPVVGRPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLSTFSVIVPQSTLLKTR-VVSRK 214 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRI 292 RN W + L QV+ S + L A SL L + +L GDV+P + R+ Sbjct: 215 GAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTLSRLQAGDVIPFHDGQDVRV 274 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 +G + ++G +Y +R++ + L Sbjct: 275 EVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDIL 310 >UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campylobacterales RepID=Q17WT1_HELAH Length = 283 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 28/272 (10%), Positives = 83/272 (30%), Gaps = 18/272 (6%) Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 F + L L+ ++P + + + E + + + + ++ Sbjct: 7 IFIQEVVSTLEGLVGKTPSVGLEK-EVSNNEEASLISTPYARVMISAIDKGESHIELLAP 65 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY 179 LV D + GG+G +++ + M + + K+ L + Sbjct: 66 VGLVTTLSDLMLGGEGASKEEMDNDDL-----DAFKEMASNIFGAIATSLKS-QELLPKL 119 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL-TGEFNICLPFSMIEPLRELLVNPPLEN 238 + + D F ++ L + + + I + Sbjct: 120 NFTTTNAEIAKELPKKEDYAKAVVFSFKMEALKESQMILLVTTDFINQFETKKEHNEEGT 179 Query: 239 SRNEDQNWRDNLVRQ--------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK-- 288 + +D + + +L + + L ++ ++ G V+ +++ Sbjct: 180 KVVREDKIQDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 239 Query: 289 PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 D + VD + + ++G + ++I + Sbjct: 240 NDPLEILVDDKVIAKGEVVIVDGNFGIQITDI 271 >UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria RepID=B8DI82_LISMH Length = 515 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 41/307 (13%), Positives = 97/307 (31%), Gaps = 34/307 (11%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + E L + L LL R + + R+ EF N ++ Sbjct: 211 LTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLQIPTARVIDSKEFEFNERPCLVTSVE 270 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE----QRVINRMLKLA 161 ++ LR + + S + I D + GDG E E T E Q ++N+M+ + Sbjct: 271 FVEGLRSSNTFIISKNAALIMADLMMMGDGLV---QEDAELTELEVSAVQELMNQMMGFS 327 Query: 162 LEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLP 220 S+ + + V F +E+ L Sbjct: 328 ATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFN 387 Query: 221 FSMIEPLRELL------------------------VNPPLENSRNEDQNWRDNLVRQVQH 256 + + + +L+ P+ + E++ + + ++ Sbjct: 388 PAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILED 447 Query: 257 SQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRIIAHVDGVPVLTSQYGTLNGQYA 314 + L F ++L + + DV+ + + ++ ++GV + ++ + Sbjct: 448 IPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFG 507 Query: 315 LRIEHLI 321 +++ L+ Sbjct: 508 IQMTELV 514 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 7/246 (2%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + + L + I L +LL + I+ + I + L + Sbjct: 9 ITQMELDVIGEIANISFGSASTVLSDLLHQQVTISTPKVEIVDLYNTKDIDIPHVVLEVN 68 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF-THTEQRVINRMLKLALEG 164 K + L V + D + GDG E E Q +N+M+ + Sbjct: 69 FHKGIEMRNLFVLQSEVAAAIADLMMMGDGNIDPNEELSELHLSAVQEAMNQMMGHSATA 128 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSM 223 S+ + + + ++ + + + ++ F + IG+ +T +P Sbjct: 129 MSNMFGEMIDITTP--DIKVIALKEQLEDTNDQTMIKVGFDLIIGDLITSNLMQLIPIDK 186 Query: 224 IEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV-ANFADISLRLSQILKLNPGD 282 L + L+ + + L + LE+ S LS++L Sbjct: 187 GHELAKRLLGDAVPEPEPVKEEIS--LTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSL 244 Query: 283 VLPIEK 288 +P + Sbjct: 245 QIPTAR 250 >UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion protein n=5 Tax=Bacteria RepID=B2A359_NATTJ Length = 422 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 84/269 (31%), Gaps = 14/269 (5%) Query: 4 SILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRR-----------VVRERLQ 52 ILSQ EIDALL G + G S + + Sbjct: 6 DILSQEEIDALLKGSGDDDSGDDGDNHGGSGGSGSGNDGNGGNGNNGDNGDNSLNETEKD 65 Query: 53 ALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLR 111 + I L LL + IT + + Y P P + + +L+ L Sbjct: 66 TVGEIGNISMGTAATTLSVLLNQKVSITTPRVEVTDYATLREEFPKPHVAVEVEYLEGLE 125 Query: 112 GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF-THTEQRVINRMLKLALEGYSDAWK 170 G +++ + + + GGDG + E EF +N+M+ A SD + Sbjct: 126 GINVLILKQEDAKMIANLMMGGDGTDIAEGEIEEFHLSAVGEAMNQMMGSASTSMSDMFD 185 Query: 171 AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRE 229 + V+ + P + ++ F ++IG+ + E +PF + + Sbjct: 186 KTINISPPSVKMLDLGSEEALEELPKEPMIKVAFDLKIGDLIDSEIMQLIPFEFAKDMVV 245 Query: 230 LLVNPPLENSRNEDQNWRDNLVRQVQHSQ 258 L E Q + Sbjct: 246 SLTGDSAEEVSAGQQEMAASSEGTAAAKP 274 Score = 97.0 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 94/333 (28%), Gaps = 57/333 (17%) Query: 5 ILSQAE---IDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERF 61 IL Q + I L+ G L A+ + Sbjct: 131 ILKQEDAKMIANLMMGGDGTDIAEGEIEEF------------------HLSAVGEAMNQM 172 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPY--HEFARNLP-VPTNLNLIHL---KPLRGTGL 115 + ++ ++ +I+ ++++ E LP P L + + Sbjct: 173 MGSASTSMSDMFDKTINISPPSVKMLDLGSEEALEELPKEPMIKVAFDLKIGDLIDSEIM 232 Query: 116 VVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPL 175 + V +L G + + M + + +A Sbjct: 233 QLIPFEFAKDMVVSLTGDSAEEVSAGQ------------QEMAASSEGTAAAKPQAPTQT 280 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + + + P GE + + + + +P Sbjct: 281 GPGPESGQSPEREVSTQGQPTG--------------QGEQQMKQEQQPKKDYQPVEFSPL 326 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRII 293 + + + + LE+ ++ +IL+L PG ++ ++K + + Sbjct: 327 EGHQSAAKGENSN--IELIMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVD 384 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V+G + + ++ + +RI +I+P+ Sbjct: 385 IKVNGKLIAKGEVVVIDENFGIRITEIISPVER 417 >UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Helicobacter pylori RepID=B2USQ1_HELPS Length = 288 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 31/276 (11%), Positives = 86/276 (31%), Gaps = 21/276 (7%) Query: 60 RFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN-LNLIHLKPLRGTGLVVF 118 F + L L+ ++P + + + + P + + ++ + +V Sbjct: 7 IFIQEVVSTLEGLVGKAPSVGLEKEVSNSEEAWESLISAPYARVMVSAIEKEESSIELVA 66 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 LV D + GG+G +++ + M + + K+ L + Sbjct: 67 PVVLVTALSDLMLGGEGASKEEMDNDDL-----DAFKEMASNIFGAIATSLKS-QELLPK 120 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE------------P 226 + + D F ++ L I L + E Sbjct: 121 LNFTTTNAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEE 180 Query: 227 LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI 286 + ++ +N + + +L + + L ++ ++ G V+ + Sbjct: 181 ETKKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVEL 240 Query: 287 EK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 ++ D + VD + + ++G + ++I + Sbjct: 241 DQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITDI 276 >UniRef50_Q44457 Flagellar motor switch protein fliM n=11 Tax=Rhizobium/Agrobacterium group RepID=FLIM_AGRT5 Length = 321 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 100/281 (35%), Gaps = 14/281 (4%) Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 I ++ + + D+ + N+ + L+ ++ Sbjct: 41 IGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIANVGQNVAVADCSLRNWCPNFMM 100 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 V ++ + G + R +H E + +L A E Sbjct: 101 AVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAAMVLGRIAGVLRSGVNAPGGFE 160 Query: 177 VEYVRSEMQVKFTNITTSPNDIV-----VNTPFHVEIGNLTGEFNICLPFSMIEPLRELL 231 N ++ ++++ V ++IG ++ EF++ +P + ++ Sbjct: 161 ATID----PPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSEFSLIVPQRPLLK-TSIV 215 Query: 232 VNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLP---IEK 288 + + + W D + +QV+ SQ+ L A +L L I +L GDV+P +++ Sbjct: 216 APKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTISRLVAGDVIPFQDLKQ 275 Query: 289 PDR-IIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSL 328 D + +G + ++G +Y +R+++ ++ L Sbjct: 276 DDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEIL 316 >UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B0L6_SULD5 Length = 286 Score = 117 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 93/266 (34%), Gaps = 16/266 (6%) Query: 67 MGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIA 126 + L +P + + R P L++ + G V + S+ Sbjct: 14 STIEGLTGIAPQVELNKEESTESK--LRLSPPLARLDVSVGGDMHGRMRVTVATSIATAI 71 Query: 127 VDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQV 186 D + GG+G +++ + T + +++ +L + + K + LE + E Sbjct: 72 GDMMLGGEGLEKEEMDAEDLDAT-KEIVSNILSSFSRSLA-SQKNMPKLEFDIESVEYID 129 Query: 187 KFTNITTSPNDIVVNTPFHVEIGNLTGEFNI---CLPFSMIEPLRELLVNPPLENSRNED 243 + I + + + + + T F I P P + E++ E Sbjct: 130 ANSEIEFRGYEKLFIYNLAIHMSHDTIAFAISSELTPLVEDMPRMDTPKESIPESALIEP 189 Query: 244 QNWRDNLVRQ-------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIA 294 + ++ + ++ +L + + L +L ++ G V+ +++ D + Sbjct: 190 KKVVPSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEI 249 Query: 295 HVDGVPVLTSQYGTLNGQYALRIEHL 320 V + + ++G + ++I + Sbjct: 250 LVGDKVIAMGEVVIVDGNFGVQIGEI 275 >UniRef50_Q12PK7 Surface presentation of antigens (SPOA) protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12PK7_SHEDO Length = 181 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 1/160 (0%) Query: 173 NPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLV 232 +E +Y+ SE+ NI SP ++VV FH+E+ G+F+I +P+SMIEP+RELL Sbjct: 9 IYVEFDYLDSEVNPAMANIV-SPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLD 67 Query: 233 NPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRI 292 + ++ D W L ++ Q+ AN + L L ++ L GD++PIE P+ I Sbjct: 68 AGVQSDKQDTDMRWSQALRDEIMDVQVGFDANIVEHELTLRDVMGLRAGDIIPIELPEHI 127 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQ 332 + ++ +P + G AL+I I E Q Sbjct: 128 MMRIEDLPTYRCKMGKSRDHLALKISEKIARPETVKTELQ 167 >UniRef50_A9CYK4 Flagellar motor switch transmembrane protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CYK4_9RHIZ Length = 315 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 82/274 (29%), Gaps = 4/274 (1%) Query: 55 EIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTG 114 + G I+ + ++ Sbjct: 38 HSLQSAMCGPLERAFEMATNVHLSARPGEIQQGSRRQLLSVFGQDAVFCDTWIEGWSRDI 97 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 + LV V+ L GG + R + E + + + + + Sbjct: 98 SALCGTKLVIAMVECLLGGSDPEELDIAARPLSGIELDMSLVVFEQLNDTLREVASKDPT 157 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + + + + P+ ++ G++ + LP S++ L+ + Sbjct: 158 AKAGAGKPMLDIPEAEDDPKPDFHAAAITLELQFGSVVTPLTLILPQSIL--LKTKPITS 215 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIA 294 D +W + L +V SQ+ L A A L + +I +L GD++ + I Sbjct: 216 KKNAPNAVDDDWAERLNARVSRSQINLQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEV 275 Query: 295 H--VDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 +G + T G +Y +++E P N Sbjct: 276 TLSANGKALYTCALGKSGARYMVKVEGDAGPDEN 309 >UniRef50_Q89AZ4 Flagellar motor switch protein fliM n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=FLIM_BUCBP Length = 331 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 129/314 (41%), Gaps = 12/314 (3%) Query: 28 SVSGESDIRPYDPNTQRRVVRERL-QALEIINERFARHFRMGLFNLLRRSPDITVGAIRI 86 + S I PY T + + LE ++E F + F + I+ I Sbjct: 17 KIDISSKIFPYYQTTDYYLTYHNMKDRLENMHECFLKQFTKHISEYSDVDCKISFYKFII 76 Query: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGG-DGRFPTKVEGRE 145 Q + +N+ + + + P + G++ S ++ ++ LFGG + + + ++ Sbjct: 77 QKFKNIKKNIKNNSISDCFEISPYKKLGIIFVSDNISDYLIEYLFGGCELKNSSNGLFKK 136 Query: 146 FTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV--RSEMQVKFTNITT-SPNDIVVNT 202 T + ++ +M K+ LE Y W ++ +++ + R + + +N+ + D V Sbjct: 137 LTLSTINIVKKMFKIILEQYYFLWNKVSLCKMKLILNRLQNLNEISNVNFINSKDTFVTF 196 Query: 203 PFHVEIGNLTGEFNICLPFSM-------IEPLRELLVNPPLENSRNEDQNWRDNLVRQVQ 255 F + I N G ICLP S+ + V+ ++ + + V Sbjct: 197 LFRLRIANKFGMLGICLPTSLSFQCNNEADVNSVHNVSHISYDNVVNTEIRKRLFQVIVY 256 Query: 256 HSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYAL 315 + ++ L + + LS+I+ GD+LPI D ++A+ + VP+L +Y +Y Sbjct: 257 NCKIVLKIVLIENYITLSKIIAFKVGDILPIHMLDNVVAYSENVPILIGKYKMFKNKYVF 316 Query: 316 RIEHLINPILNSLN 329 + N LN N Sbjct: 317 CVVDYYNSTLNYKN 330 >UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30SP4_SULDN Length = 283 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 87/270 (32%), Gaps = 16/270 (5%) Query: 61 FARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP 120 F + L+ ++P + + + + +P LN+ + ++ +P Sbjct: 8 FESETVGTIEALIGQAPSMELKERQELSI--ISSIVPPIVLLNVSVSGDTNSSAMLALTP 65 Query: 121 SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYV 180 LV D + G D V + + + + + A K + L Sbjct: 66 RLVASLSDMMMGEDQSNREDVSEDDL-DAAKEIASNIFGAISNSLG-AQKELPKLSFNID 123 Query: 181 RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR 240 E + +++ + F + G + + ++ L + + Sbjct: 124 NIEYIDENKDVSLENYSKMFVYHFVI--GETNSLLMLIMDENLSNILFQKDKTLGDDRKN 181 Query: 241 NEDQNW--------RDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PD 290 ++N + + + +L + + L +L ++ G V+ + + D Sbjct: 182 ESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLAND 241 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + VD + + ++G + ++I + Sbjct: 242 PLDILVDDNVIAEGEVVIVDGNFGVQITSI 271 >UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XES1_9HELI Length = 283 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 89/267 (33%), Gaps = 11/267 (4%) Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E F + + ++ R+ +T +N+ T + Sbjct: 11 ELFIQEMVATIDGMMGRTAVVTHTGDTEVS-DSLLGTPFGKVVVNVSLGASQVSTLCFIM 69 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +L D + GG+G + ++ + + + + A L Sbjct: 70 PENLATALPDLMMGGEGDTGKDMMD----DDDKDGLKEVFQSITGALATALGGHEKL-PH 124 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 + + V S +D + F V I ++ E + ++ + + L P Sbjct: 125 FSFAIADVSNVESEGSLSDFDTASRFDVGIDSVKSELIMLTKNDLLTHVPKDLKAPASTA 184 Query: 239 SRNEDQNWRDNLVRQ---VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRII 293 S N+D + D +R + L + + L ++ ++ G V+ + + D + Sbjct: 185 SGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQLASDPLE 244 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHL 320 V+ + + ++G +A++I + Sbjct: 245 ILVNDKIIGKGEVVVVDGNFAIQITEI 271 >UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding protein n=20 Tax=Campylobacter RepID=A7GZX6_CAMC5 Length = 286 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 88/273 (32%), Gaps = 27/273 (9%) Query: 69 LFNLLRRSPD-ITVGAIRIQPYHEF----ARNLPVPTNLNLIHLKP-LRGTGLVVFSPSL 122 N L+ + + +T + ++F + P + + L + +V +P L Sbjct: 9 FTNELKATVEGLTGRTPEVGERNDFDAPTQNGIKPPVVMASVMLSGDVNAKAEIVCTPVL 68 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW---KAINPLEVEY 179 V + + G + + G + E + L +S + K + + E Sbjct: 69 VSAISEWMMGEEEISRNEALGAD----ELDAAKEIFSNLLSAFSTSLGAQKGMPKISFEI 124 Query: 180 VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFS---MIEPLRELLVNPPL 236 V + + + S + + F V+I ++ + EP + Sbjct: 125 VNVNFLDENSALDFSVYEKLFL--FSVKIEDINEHIGFVCDHTLMKFFEPTKVGESESQS 182 Query: 237 ENSRNEDQNWRDNLVRQ-------VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK- 288 + R + + +L + + L +L ++ G V+ + + Sbjct: 183 GDQAKATHGSRSEFSAEEMRNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQL 242 Query: 289 -PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 D + + + + ++G + ++I + Sbjct: 243 ANDPLEILIGDKVIALGEVVIIDGNFGIQITQI 275 >UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBQ2_9PROT Length = 269 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 92/270 (34%), Gaps = 15/270 (5%) Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + + L SP++ + Q + +P +N+ +G + + Sbjct: 6 NLLVEEIKSVIEGLTGFSPEVEIK----QQGEKIVDIIPPFIKVNVSVSP--KGEIVFIL 59 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +P + D + GG+G T + + T + +++ + +A + L + Sbjct: 60 TPEIATALGDMMLGGEGEARTDINDEDLDAT-KEIVSNIFGSLTSTL-EAQDNMENLTFK 117 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 F + ++ ++ E + + + + E+ Sbjct: 118 VEDI----AFVETNEDFSKYAYFLDLICKVASVEKECFVLFDKDFVSIFNNDIKDKISES 173 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHV 296 S ++ L + +L+L ++ L ++ ++ G ++ +++ + + + Sbjct: 174 SHELNKEIPSQLDM-LMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQLANEPLDILI 232 Query: 297 DGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + + + ++G + ++I + + Sbjct: 233 EDKKIGEGEVVIVDGNFGIQITSIGSKADR 262 >UniRef50_Q87FY0 Lateral flagellar FliM-like motor switch protein n=14 Tax=Vibrio RepID=Q87FY0_VIBPA Length = 272 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 107/310 (34%), Gaps = 46/310 (14%) Query: 24 EPTASVSGESDIRPYD---PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRS-PDI 79 T SDI+P D ++R++L+ L I+E L N L + + Sbjct: 1 METRVSESISDIKPLDVELLGKPIHIIRDKLENL--ISES-CSSLTNELQNWLSTNKVEA 57 Query: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139 ++ ++ + + + + H G V + D +G + Sbjct: 58 SLTSVDLHRFSPAMMDKDQTST----HKHQEGGMVFVHGDTQTLVKLADRFYGANTERSV 113 Query: 140 KVEGREFTHTEQRVINRMLKLALEGYS--DAWKAINPLEVEYVRSEMQVKFTNITTSPND 197 T ++ R+ R+ ++ + + D W+ +P Sbjct: 114 AT----LTASDLRLQERISRIIIGWLAPQDMWE------------------ACEYEAPRG 151 Query: 198 IVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHS 257 I + ++ G + L +I+ L E L D + + R ++ + Sbjct: 152 IGLCVQLNITFEGYQGSMYLKLDTHLIQTLIEQL-------ELQSDVDLYEPFCRSLEST 204 Query: 258 QLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 + L + ++ LS ++ L P D++PIE + + + P+ T + +GQ L Sbjct: 205 PVRLNVVLSKKTMALSDVVSLKPDDIMPIELLNTVPVSIGNQPLFTGRIAEQDGQLVL-- 262 Query: 318 EHLINPILNS 327 + NP + Sbjct: 263 --IFNPDKET 270 >UniRef50_UPI00016C4202 hypothetical protein GobsU_09169 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4202 Length = 283 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 22/291 (7%) Query: 37 PYDPNTQ--RRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFAR 94 YD + R L + R LR + + + P + Sbjct: 5 EYDFRKPPPGDIERNVTAWLTL----ACRRTNEAAVQALRYPATLQIAKVET-PSAAYCL 59 Query: 95 NLPVPTNLNLIHLKPL--RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR 152 +++ P G L+VF ++ + L G RE T E Sbjct: 60 AFFPEGAISVPLAPPDAPGGGALLVFPNPVLIALLSGLIGEAPEALP--ADREPTPMESA 117 Query: 153 VINRML-KLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNL 211 +I ++ + + + +W + PL V + T N+ + F + Sbjct: 118 LIPHLVREFFVTPFLKSWPGVEPL---VVDIGAPAAPAAVWTGGNEHNIFVTFTLSAPYG 174 Query: 212 TGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLR 271 + L S + S + + V+ +E+ L Sbjct: 175 EHPIYLLLTRSG-----RWEQLAAIGLSPPVTPAPKSEIESVVRAMSVEMSVILGRADLT 229 Query: 272 LSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + + L GDV+ ++ + + V G G + + A+ ++ + Sbjct: 230 MRDVSDLTTGDVIVFDQKVTEPLDGLVSGARKFRVWPGVVGDRAAVVVDTI 280 >UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundicola AmH RepID=B9L5V0_NAUPA Length = 270 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 28/265 (10%), Positives = 92/265 (34%), Gaps = 15/265 (5%) Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 E + + L+ +P+I++ + + P + +I +KP +G L + Sbjct: 6 ELLINEIKSTIEGLIGIAPEISILSET----RDLGPTKPPYAKI-VIRVKP-KGEILFLI 59 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 + D + G+G T++ + + +I+ + A + L+ E Sbjct: 60 PAEIATALGDLMLAGEGTPKTELNDDDLDAI-KEIISNVFGALKTTLG-AQDNMPNLDFE 117 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN-PPLE 237 V + ++ ++ ++ + S+ + L + Sbjct: 118 IA----NVFAVDKEEDISEYAYAINMECKVNDVVKVCQVVFDESVYDILNPSTKSEGSST 173 Query: 238 NSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAH 295 S+ + + + +L+L + L ++ ++ G ++ + + + + Sbjct: 174 PSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEPLDIL 233 Query: 296 VDGVPVLTSQYGTLNGQYALRIEHL 320 ++ + + ++G + ++I + Sbjct: 234 IEDKKIGEGEVVIVDGNFGIQITSI 258 >UniRef50_B2TXI0 Flagellar motor switch protein FliM n=4 Tax=Enterobacteriaceae RepID=B2TXI0_SHIB3 Length = 122 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 115/117 (98%), Positives = 115/117 (98%) Query: 218 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 277 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV NFADISLRLSQILK Sbjct: 6 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVTNFADISLRLSQILK 65 Query: 278 LNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 334 L PGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK Sbjct: 66 LKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK 122 >UniRef50_A3WGR7 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGR7_9SPHN Length = 343 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 86/275 (31%), Gaps = 12/275 (4%) Query: 49 ERLQALEIINERFARHFRMGLFNLL-RRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHL 107 ER QA+ A+ L LL ++++ + + L+ Sbjct: 33 ERAQAISTWCRDLAQELAQELAPLLSGGRLNVSIAEPEQVGAQDVFDLIGPIAVNCLLRC 92 Query: 108 KPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGR-EFTH--TEQRVINRMLKLALEG 164 T L + D FGG+G P + + + ++ + + + Sbjct: 93 GEGDQTVLFSLDYATAIGLTDCSFGGEGTLPDEAPSQLPHSAAMLVEQFAATVAQAIVMT 152 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC-LPFSM 223 A +A + VRSE + + V + G + + Sbjct: 153 NGSAERARGDV---LVRSESVTRLK--PFGADAEVALFKLTINRGESANWCALFAVASDR 207 Query: 224 IEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDV 283 ++ L L + + E + L L A +I L L ++ +L PGD Sbjct: 208 VDGLLPGLEAVRIRSRSLEGSGDFERSGFAAM--PLTLEAVVGEIDLTLGRLEQLRPGDK 265 Query: 284 LPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 +P+ + + + G L+ ALR+ Sbjct: 266 IPLTISRDLPLRIGETVFARGKVGRLDSNLALRVT 300 >UniRef50_Q0C4V9 SPOA domain protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C4V9_HYPNA Length = 325 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 100/340 (29%), Gaps = 45/340 (13%) Query: 2 GDSILSQAEIDALLNG-DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINER 60 +L+ AEI+ LL S++ D P + T + + E Sbjct: 14 SRGVLTAAEIEMLLRPDLSDMDDLPETEPEAVPAPKLVQEFTPAPPAQGEAR------EE 67 Query: 61 FARHFRMGLFNLLRRSPDI----TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGT--G 114 AR L +R + +V + + P ++ G Sbjct: 68 AARRISARLSRAMREHCGLAAAFSVKRVSPASLAQAVSARDEPGQ-AIVCCSGADGDVAA 126 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 ++V L I ++ GG + + + + ++ EG + Sbjct: 127 MLVIGAGLAQIMIETACGG---PVPNGQPKALSPIDLALV--------EGLTRPLAPFIG 175 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNP 234 + + E F +P + V G + +++P Sbjct: 176 RGLGFAGVETDPLFAASIAAPG-VAYEITLSVRAGGADWPARLL----VLKPFLAEAPEA 230 Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI--EKPDRI 292 +R + + + A A + + +S++ L PG L + + Sbjct: 231 EAAPTRGAHAS---------GALTVLMTARVARVEMPISRLTSLRPGVTLLLGVPADQPV 281 Query: 293 IAH---VDGVPVLTSQYGTLNGQYALRIEHLINPILNSLN 329 +DG +Q G + ALRI P L +LN Sbjct: 282 ELLSGGLDGDVAAEAQIGRKGNRMALRISKR-GPALRALN 320 >UniRef50_A4SI06 Lateral flagellar motor switch protein, LfiM n=2 Tax=Aeromonas RepID=A4SI06_AERS4 Length = 236 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 78/245 (31%), Gaps = 26/245 (10%) Query: 86 IQPYHEFAR-NLPVPT--NLNLIHLKPLR--GTGLVVFSPSLVFIAVDNLFGGDGRFPTK 140 Y EF + P + + L SPS+++ FGG R + Sbjct: 11 ELTYQEFIAVSSPEHDDGLIWVEARSLLDTQRVAYFSISPSVIYRLAVLFFGGSLRNQGE 70 Query: 141 VEG--REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI 198 + T TEQR++ R+ + ++ +S + LE + + Sbjct: 71 TASHSKGLTDTEQRLVLRLCQYQVDIWSSCLG-LGDLEWQLTLITRD-----VLPVSRLW 124 Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQ 258 + V + + + P P + L + + H Sbjct: 125 MAAATLTVGSFSHGWQLWLVPPAESTGPAAGHALQD-------------GTLEQALTHIP 171 Query: 259 LELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 L +S+ L+ + L GDVL ++ P+ + A + P + + G ++ Sbjct: 172 TRLRVVMGQLSMTLADLECLKVGDVLSLDLPELVPALIGNRPCFSGRIAEHKGSLVYQVA 231 Query: 319 HLINP 323 ++ Sbjct: 232 TVVEE 236 >UniRef50_A6F9R6 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F9R6_9GAMM Length = 306 Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 101/296 (34%), Gaps = 29/296 (9%) Query: 29 VSGESDIRPYDPNTQRRVVRERLQALEIINERFA---RHFRMGLFNLLRRSPDITVGAIR 85 + + I YD +RR + LE+IN + R L L I Sbjct: 32 SAESAGIEKYDLLGERRQWTD---CLEVINSDLSLAHREIERRLSQLFNEY----EYRIT 84 Query: 86 IQPY-HEFARNLPVPTNLNLIHLKPLRG-TGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 +Q + HE + + TN+ + + G L+ + ++++ + G + K Sbjct: 85 LQKFTHERVNPVDLGTNIIWLQAQNNVGLKVLLSINNAMLYTLTEIFLGAT-KPSNKDNL 143 Query: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTP 203 + + +E R++ R+L + L+ + + + + + D +++ Sbjct: 144 AQPSDSEYRLLKRILTIQLDALDNQLSHHHEWTISHTN----------QPTIGDEFISST 193 Query: 204 FHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVA 263 I + I P I ++ + + L + + Sbjct: 194 IDCTIKEYLSSWRIWYPKEFINQTLS------SNRTKPDYELLAAKLANAATNIPTNINV 247 Query: 264 NFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 A L L Q+ +L GD + ++ P+ + A + + +G+ +++ Sbjct: 248 ILAKTQLNLVQLTQLKSGDFIMMDLPEIVSACTGNHVIAHGRVVVQSGRLVMQVTD 303 >UniRef50_B9KJS2 Surface presentation of antigens (SPOA) protein n=5 Tax=Rhodobacter RepID=B9KJS2_RHOSK Length = 331 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 84/239 (35%), Gaps = 13/239 (5%) Query: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF 146 + E +P + + P G GL+ +P L+ V+ G P R+ Sbjct: 67 RSLTELLE-MPEDLSFYAVLEGPGEGLGLIALAPPLLAGLVEVQTVGR-VRPQPAATRKP 124 Query: 147 THTEQRVINRMLKLALEGYSDAW----KAINPLEVEYVRSEMQVKFTNITTSP-NDIVVN 201 + T+ ++ + AL + Y + + V+ Sbjct: 125 SRTDAAMVQDFIDRALAELDLLLIEDEDRVWAGGFRYASFLDDPRPLGLLLEDCPYRVLV 184 Query: 202 TPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLEL 261 + +G TG+ + +P + EL + + + ++ + QV L Sbjct: 185 AEVDLALGAKTGQLLLAVPA---DGRGELPHHGGQDEAPPPLSDFGAAMAEQVMAVDCRL 241 Query: 262 VANFADISLRLSQILKLNPGDVLPIEK---PDRIIAHVDGVPVLTSQYGTLNGQYALRI 317 A I+L L+ +L PGD +P+ + + +DG PV + G G A+R+ Sbjct: 242 EAVLGRITLPLAHVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 300 >UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=5 Tax=Bacteria RepID=B0THB7_HELMI Length = 375 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 5/163 (3%) Query: 73 LRRSPDITVGAIRIQPYHEFARNLPVP-TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLF 131 + + DIT + + ++ P P +++ + L G +++ S V I VD + Sbjct: 1 MGKKVDITTPRVYVTTKAALQKDYPSPFVVVDVTYTAGLEGNNVLIIRESDVAIIVDLMM 60 Query: 132 GGDG-RFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTN 190 GGDG P ++ F+ + +N+M+ A + + + + + + Sbjct: 61 GGDGMSPPAELNEIHFSAISEA-MNQMMGSAATSMATMLQKKIDISPPMLNT-IDFASEK 118 Query: 191 ITTSPNDIVVNTPFHVEIGN-LTGEFNICLPFSMIEPLRELLV 232 + D V+ F + I + E P + L L+ Sbjct: 119 LPRPDVDPVIKVSFRMVIEGLVDSELMQIYPIPFAKQLVSGLM 161 Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ + IL L PG V+ ++K + + V+G + + ++ Sbjct: 296 IMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVVVIDE 355 Query: 312 QYALRIEHLINPILN 326 + +RI +++PI Sbjct: 356 NFGVRITDIVSPIER 370 >UniRef50_A1RF66 Putative uncharacterized protein n=3 Tax=Shewanella RepID=A1RF66_SHESW Length = 293 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 95/285 (33%), Gaps = 21/285 (7%) Query: 43 QRRVVRERL-QALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTN 101 Q ++ R RL Q L ++ L LLR+ + +P +P Sbjct: 25 QEKLARTRLLQQLVQLHRPLIDAINNILSPLLRQGHSAVSSSHLTEPRKPI---IPEHYY 81 Query: 102 LNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLA 161 I G + N +G P R+ + +E R+ ++L Sbjct: 82 AWFILKHQQNILGYWRIDRCTLDQLASNYYG-SMSTPLNSPLRDPSQSEFRLARKLLLSV 140 Query: 162 LEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF 221 ++ + + LEVE ++ +M++ + + F+ + T CL Sbjct: 141 VDKLPNNTIDTSALEVELIKGQMELAVSAVW----------SFNFSQESQTPPMLFCLTE 190 Query: 222 SMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPG 281 ++ L E + L +++ +++ ++ + + +LN G Sbjct: 191 HLLGHLAE------QPKKSEVSADLPAKLAIWLKNLPVKIQVTLGQHNIPVHSLGQLNTG 244 Query: 282 DVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 D+LPI + + + P+ + + G ++ + Sbjct: 245 DILPINLYPKTLLSIGSTPLFHATVHSHEGLMVAKLTQDVYQYEE 289 >UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B8 Length = 301 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 95/286 (33%), Gaps = 25/286 (8%) Query: 52 QALEIINERFARHFRMGLFNLLRRSPD---ITVGAIRIQPYHEFARNLPVPTNLNLIHLK 108 AL + A L +L + + V P+ +++ ++ Sbjct: 5 DALMRLGASTAEAIAKVLDSLCPDQVERGDVAVLNPDTNPFATLEA---PAVAVSVAYVD 61 Query: 109 PLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA 168 + G + V + ++ G + P + + E + E + + + A Sbjct: 62 GVTGANVFVMTAKGARRIAASMMG---QPPPEDDASELSVLELSAVAEAANQMMAAAAAA 118 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVV----NTPFHVEIGNLTGEFNICLPFSM- 223 + +VE E ++ + + F V + +P + Sbjct: 119 IGVVLGQDVEIAPPETRLFNSASEAIDAYEMAPHGARATFRV--CDEPCRLVQLVPNAFV 176 Query: 224 ------IEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 277 ++ + V+ + D + + L ++ ++ + A + L Q Sbjct: 177 VRMTRALDEMGVEHVSGGASDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPD 236 Query: 278 LNPGDVLPIEK--PDRIIAHVDGVPVLTSQYG-TLNGQYALRIEHL 320 + G VL +++ D + +V+G+ + T +G++ALR+ + Sbjct: 237 MPAGSVLELDRKADDPVDLYVNGLRFASGTLVLTDDGEWALRLAEV 282 >UniRef50_Q165H9 Putative uncharacterized protein n=2 Tax=Roseobacter RepID=Q165H9_ROSDO Length = 382 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 81/254 (31%), Gaps = 18/254 (7%) Query: 81 VGAIRIQPY--HEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFP 138 V + + + + + L L+ P TG V +LV V G P Sbjct: 44 VIGVTQERCAAENLSDKIEDDSLLVLLD-GPAGVTGGAVIGANLVNALVQQQTMGR-VLP 101 Query: 139 TKVEGREFTHTEQRVINRMLKLAL----EGYSDAWKAINPLEVEY-VRSEMQVKFTNITT 193 R T T+ + +L ++ R++ Q F Sbjct: 102 PTSASRPLTETDAALCAPVLDALFIRANGLLETPEDKRVLPAFKFGARADSQRLFALALE 161 Query: 194 SPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQ 253 P V+ V G ++ LP L + + S D L + Sbjct: 162 EPEYTVLKLTIDVSGGITQSTLSLILP------LPKAVPERQSSESETADPGSPATLEKS 215 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDV--LPIEKPDRIIAH-VDGVPVLTSQYGTLN 310 V EL A + + LS++ +L PG +P + + ++G V G ++ Sbjct: 216 VMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPANAFESVELLSIEGARVARGSMGQID 275 Query: 311 GQYALRIEHLINPI 324 G+ AL + L P Sbjct: 276 GKRALMLGQLQTPA 289 >UniRef50_D0MGA9 Flagellar motor switch protein FliN n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGA9_RHOM4 Length = 293 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 93/294 (31%), Gaps = 39/294 (13%) Query: 51 LQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPL 110 L LE E + L LL + + +G + L L +P Sbjct: 7 LPRLEATRE----ALQQFLQTLLNQELTLELGTPATIT-TDQLNELAGDRVLIWASSEPF 61 Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAW- 169 + +P + + + G G E T ++ + +A Sbjct: 62 ----AIGLTPDWIPLLSQAMLG-----EALNPGDEGTD---DLLGEVAAQGYGTLRNALA 109 Query: 170 -KAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 + + EV +V + D ++ PF ++IG+ E I LP S+ + Sbjct: 110 AEGVRLPEVSFVVQQPGSGAAQPPVELPDSLLQLPFTLQIGDTRHEGFILLPPSVTQQPT 169 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQ------------------VQHSQLELVANFADISL 270 + + + +LE+V L Sbjct: 170 SRAPKATAAGAAEQAAVEVRPASFGELGPERIGDGGVKGNLELLADVELEIVVELGRRRL 229 Query: 271 RLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 L+ +L+L G ++ +EK + + + +G + + ++ Q+ +RI L+ Sbjct: 230 PLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGEAVVIDEQFGVRITSLVT 283 >UniRef50_A4Y0Q1 Surface presentation of antigens (SPOA) protein n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0Q1_PSEMY Length = 321 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 88/265 (33%), Gaps = 46/265 (17%) Query: 55 EIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTG 114 II++ F R++R+ L LLR V L L G Sbjct: 86 RIISDYFLRNYRINL-ELLRVDVHEQVDKEAE--------------CLYRSTL----GKV 126 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDA------ 168 +L+ A++ +GG E + +EQR+ R+ + ++ + Sbjct: 127 GFAIDRALLTEALECYYGGT--CLPNHEAPPVSTSEQRMRTRLGLDVSQLFARSILAGQT 184 Query: 169 WKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 228 + + P + Y + + V F I I L +++ L Sbjct: 185 FGKLEPYDNAYEE------------ATWEYVAEFHFTSHITGSQASIFIYLDTQLVDELT 232 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK 288 L + N + Q++ + L A + + L+Q+L L PGD+LP+ Sbjct: 233 NRL-------TPPAPVAQSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPMRL 285 Query: 289 PDRIIAHVDGVPVLTSQYGTLNGQY 313 +R ++ + +G Sbjct: 286 LERCDVQINQQKLFRGAIFEDDGSL 310 >UniRef50_Q28NV3 Putative uncharacterized protein n=1 Tax=Jannaschia sp. CCS1 RepID=Q28NV3_JANSC Length = 388 Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 86/264 (32%), Gaps = 11/264 (4%) Query: 61 FARHFRMGLFNLLRRSPDITVGAIRI-QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFS 119 R R +P + A+ + +P + GLV Sbjct: 35 LTRAIRRASLPYAVLAPQVEDAAVTSGASLQDALDTMPEQGLTAAVE-DAEGRRGLVALD 93 Query: 120 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYS--DAWKAINPL-- 175 LV ++ G+ T R+ T ++ + L L L ++ A +A Sbjct: 94 HPLVDALIEVQATGE-VEKTNHPARKVTRIDEALCRDFLDLVLAAFAQETAGQAGRDWPD 152 Query: 176 EVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPP 235 + Y + N+ V G+ TG+ + LP R V P Sbjct: 153 RMRYGSIITERAQLNLLMPERGYRVLRTSVTMGGHKTGDLVLVLPSDPAIARRGGSVEQP 212 Query: 236 LENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAH 295 + + W D ++ + + + L A + L ++ L GD++P + D Sbjct: 213 SAPA-EAPKGWGDRMLGAISTAPMALDAVLMRTIMPLGKVEDLAQGDLVPFDHNDLSAIS 271 Query: 296 VD---GVPVLTSQYGTLNGQYALR 316 ++ G G ++G+ A+R Sbjct: 272 LEDEIGHVFARGALGQVSGRRAVR 295 >UniRef50_C4Z8X6 Flagellar motor switch protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z8X6_EUBR3 Length = 197 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 68/188 (36%), Gaps = 4/188 (2%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLI 105 + RE + + + L +L++ +IT + + + + + + Sbjct: 9 ISRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVP 67 Query: 106 HLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQR-VINRMLKLALEG 164 + K L GT L++ + + + + GG+G + + E T + +N+M Sbjct: 68 YTKGLDGTNLLIIKLNDALVIANLMMGGNGSNVSDMTLDEITLSAISEAMNQMCGTIATS 127 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDI-VVNTPFHVEIGN-LTGEFNICLPFS 222 S + + S Q F N +V F + +G+ + + P S Sbjct: 128 MSSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPIS 187 Query: 223 MIEPLREL 230 +++ + + Sbjct: 188 IVKQIIKQ 195 >UniRef50_B8CVM7 Putative uncharacterized protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CVM7_SHEPW Length = 308 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 92/306 (30%), Gaps = 27/306 (8%) Query: 28 SVSGESDIRPYDPNTQRRVVRERLQA-LEIINERFARHFRMGLFNLLRRSPDITVGAIRI 86 S ++RP ++ R RL L L ++R+ + Sbjct: 26 KQSNNVEVRPVALLK-EKLARSRLLIQLTHCQRPMMDAVNELLNPIIRQGHHALSQVVMS 84 Query: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF 146 L L L G + +G K R Sbjct: 85 AKSDAITPELHHAWFLLSYQRIEL---GWWKIDKCTLDQLASGYYG-SFTSAAKSPLRAP 140 Query: 147 THTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHV 206 + +E R++ R++ A+ + ++ + + E+ T I + F + Sbjct: 141 SQSEFRLVKRLMLAAINTL-----PVADIDTDELELELITNTTPIKAP---VCCELNFPI 192 Query: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 F + E L L+ P + + D N D L + ++ ++ Sbjct: 193 AHIGPGIRFYM------AEYLLGLMAEQPSQYQADPDLN--DKLAKSLKQLPFRVMLELG 244 Query: 267 DISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 S+ ++ + +L GD+LP+ R V P+ + GQ ++ Sbjct: 245 QQSIPVTGLQQLKVGDILPMNLHSRCPVTVGKRPIFYATVHAHEGQMVAKLTQ-----EA 299 Query: 327 SLNEEQ 332 EEQ Sbjct: 300 FQTEEQ 305 >UniRef50_C1SNF8 Flagellar motor switch protein FliN n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNF8_9BACT Length = 299 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 21/280 (7%), Positives = 83/280 (29%), Gaps = 25/280 (8%) Query: 65 FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVF 124 F+ L ++ + ++ + + A + ++ + ++F + + Sbjct: 21 FQSTLNSMFDKDIKVSFSEVSSGGPDDLAGGYEGQVLI-IVTEEKSGLEAGLMFKTADIT 79 Query: 125 IAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184 + + + ++ I + AL + + ++V + ++ Sbjct: 80 FLTNLMM-----MMDEPGKESLEDDDKDAIKELASQALAAVTVPLEEKTQVKVSFRIDDV 134 Query: 185 QVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIE----------------PLR 228 V + ++ + IG+ F +++ Sbjct: 135 MVNDAPALFQSDAYMI-IDADLGIGDQNTTFRFYTDINLMNLFGGGDDEEPDFGSAFTFP 193 Query: 229 ELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE- 287 E P + + + + + + L IL + G+++ ++ Sbjct: 194 EDDDEPATGGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLKDILTMGSGNIIELDE 253 Query: 288 -KPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + + ++ + + ++G + RI+ +++ Sbjct: 254 SADEPVELVINNKVIARGEVVIVDGYFGFRIKEIVSRAER 293 >UniRef50_B0MPD4 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPD4_9FIRM Length = 419 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 37/346 (10%), Positives = 88/346 (25%), Gaps = 42/346 (12%) Query: 5 ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARH 64 IL Q ++ +LN + D + A+ + + Sbjct: 79 ILKQDDVQLILNQLMGKPPVISP-----------DFEFDEL----NISAVSEVMNQMMGA 123 Query: 65 FRMGLFNLLRRSPDITVGA---IRIQPYHEFARNLPVPTNLNLIHLKPLRGTG----LVV 117 L L DI+ + + + + G + V Sbjct: 124 SSTALSEFLGMGIDISTPTPYILSEINIADLQNYEQTDMVAAINFDLTIDGVIKSEFISV 183 Query: 118 FSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV 177 L D + GG + + + A Sbjct: 184 LDIDLAATLADRMIGGATSPEPIATEPAPAPAPAPQPVPQAEPVPQAATVQQAAPVQQAT 243 Query: 178 EYVRSEMQVKFTNITTSPNDIVVNTPF-------HVEIGNLTGEFNICLPFSMIEPLREL 230 + + + P ++ G + P +P++ + Sbjct: 244 PMPQVAPVQQAAAPVPQATPMPQVAPVPQVAPVPQADMYAQQGYYGYPNPAMYGQPVQPV 303 Query: 231 LVNPPLENSRNEDQNWRDNLV-----------RQVQHSQLELVANFADISLRLSQILKLN 279 + P N RN +N + + L++ ++ IL+ + Sbjct: 304 MQPQPAVNYRNAQLAQFENFEAPLGSEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFS 363 Query: 280 PGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 G ++ +E+ + V+G + ++ +A+RI ++ Sbjct: 364 QGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEIVKS 409 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 59/183 (32%), Gaps = 5/183 (2%) Query: 41 NTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEF-ARNLPVP 99 + +L A+ I + LL IT + + E L Sbjct: 2 GKLTTLSGMQLDAIGEIMNISMGSAATAVSELLNAKVWITTPKVTVVQASELNYDRLEPA 61 Query: 100 TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF-THTEQRVINRML 158 + + ++K L G+ L++ V + ++ L G E E V+N+M+ Sbjct: 62 ICVKIEYIKGLSGSNLMILKQDDVQLILNQLMGKPPVISPDFEFDELNISAVSEVMNQMM 121 Query: 159 KLALEGYSDAWKAINPLE--VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFN 216 + S+ + Y+ SE+ + D+V F + I + Sbjct: 122 GASSTALSEFLGMGIDISTPTPYILSEINIADLQ-NYEQTDMVAAINFDLTIDGVIKSEF 180 Query: 217 ICL 219 I + Sbjct: 181 ISV 183 >UniRef50_B0P9X9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9X9_9FIRM Length = 446 Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 31/322 (9%), Positives = 87/322 (27%), Gaps = 46/322 (14%) Query: 56 IINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHE-FARNLPVP-------TNLNLIHL 107 + + L L R +I+ + + + + V + ++ Sbjct: 123 EVMNQMMGAAATALSEFLNRVVNISTPTASVVTSEDSYRDAIGVQEGDEIVAVSFHIDIQ 182 Query: 108 KPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV----------EGREFTHTE-QRVI-- 154 + + + + SL V+ + G + + +E + T Q + Sbjct: 183 DVMNSDFVSILTCSLAKEIVEQIMGNNQESLENIHAPAQPPAAVAAQEQSATSPQSAMQP 242 Query: 155 -----------------NRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTN----ITT 193 ++ A + + + EMQ + Sbjct: 243 PAAAAAPQPPVTQAAPPQPAMQQPAVAMDMAAQQPAMQQPGMMPPEMQHPGMQPAYGMPP 302 Query: 194 SPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQ 253 + + + +P+ P + D + + Sbjct: 303 YGQMPYGYPMYPMPPYPQQAYGMQEPQPATQKPINVQNTQFPQFTVQQTDSPTSNANMDL 362 Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L++ ++ I+ G V+ + K + V+G + ++ Sbjct: 363 LMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDD 422 Query: 312 QYALRIEHLI--NPILNSLNEE 331 + +RI ++ ++ SL E+ Sbjct: 423 NFGVRITEIVGTKELMESLKED 444 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 5/197 (2%) Query: 46 VVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLN-L 104 + A+ + + +LL R +I+ ++ ++ +H + P + + Sbjct: 15 ISMMEQDAIGEVLNISMGSSATAVSSLLDRQVNISTPSVSVREFHTLDYSAMEPALIVKI 74 Query: 105 IHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQ-RVINRMLKLALE 163 +++ + G ++VF + I ++ L G D E E + + V+N+M+ A Sbjct: 75 EYVEGISGNNVMVFRQRDIQIILNLLMGNDDPPSDDFEFDELSMSAACEVMNQMMGAAAT 134 Query: 164 GYSDAWKAINPLEVEYVRSEMQVKF--TNITTSPNDIVVNTPFHVEIGNL-TGEFNICLP 220 S+ + + I D +V FH++I ++ +F L Sbjct: 135 ALSEFLNRVVNISTPTASVVTSEDSYRDAIGVQEGDEIVAVSFHIDIQDVMNSDFVSILT 194 Query: 221 FSMIEPLRELLVNPPLE 237 S+ + + E ++ E Sbjct: 195 CSLAKEIVEQIMGNNQE 211 >UniRef50_B6BN04 Flagellar motor switch FliN n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BN04_9PROT Length = 288 Score = 95.0 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 90/281 (32%), Gaps = 25/281 (8%) Query: 59 ERFARHFRM----GLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTG 114 F + F + L+ ++P + + Q + +P L + T Sbjct: 2 NNFMKLFEDETIGTVEALVGQAPKLEMK--EEQNLSIISNIIPPIVLAKLSVSGDINATA 59 Query: 115 LVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINP 174 +V +P+L D + G + + + +I+ + S A K I Sbjct: 60 MVALTPNLAASLSDMMMG-EDASDRDDVSDDDLDASKEIISNIFGAISNSLS-AQKEIPV 117 Query: 175 LEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLP-------------F 221 L + E + ++++ + F + G+LT F L Sbjct: 118 LSFKIDSIEFVGEDSDVSLEDYSKMYVYKFMI--GDLTSLFMFILDENLNNSLEGNTKDN 175 Query: 222 SMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPG 281 S + S + N + + +L + + L +L ++ G Sbjct: 176 SHDSMSPSMSSVSSDYTSNVKLSGEEMNNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIG 235 Query: 282 DVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 V+ + + D + VD + + ++G + ++I + Sbjct: 236 SVIELNQLANDPLDILVDNHVIAQGEVVIVDGNFGVQITSI 276 >UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKI4_9BACT Length = 384 Score = 95.0 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 11/106 (10%), Positives = 37/106 (34%), Gaps = 2/106 (1%) Query: 219 LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKL 278 P P ++ + + + + + + + ++L Sbjct: 269 PPSGEASPPVDVRPAQFSPLQPAAVDSSLPSNIGLIADIPVRVTVELGRTRKSVGEVLSF 328 Query: 279 NPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 PG V+ ++K + + V+G + + ++ + +R+ ++N Sbjct: 329 APGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDENFGVRVTEILN 374 >UniRef50_B1K3A5 Surface presentation of antigens (SPOA) protein n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1K3A5_BURCC Length = 290 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 18/210 (8%) Query: 111 RGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWK 170 RG V L+ + +G T E+R + L ++ A Sbjct: 95 RGQISVRCDRELLLALLACHYGTSLDEAVPTAPAPETGAERRFSAQQHTALLTAFASAML 154 Query: 171 AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 230 ++E ++ P V+ + + G+ L ++ L Sbjct: 155 G--------DQAEPFSPNGDMLPGPGVRVLRMTISDRLRKVGGDVEFALDDMWLDHLFAR 206 Query: 231 LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPD 290 L L + + Q + + + ++RL ++L++ PGDVLP+ P+ Sbjct: 207 LDAQHLRPAPDSAQANVS--------IPVTISVHVLSKNMRLDELLRMRPGDVLPVRLPE 258 Query: 291 RIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 + V+ V + + G AL I Sbjct: 259 TVDVLVNNVRLYRAALAEHQG--ALWITSF 286 >UniRef50_A8GYM9 Putative uncharacterized protein n=3 Tax=Shewanella RepID=A8GYM9_SHEPA Length = 293 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 88/294 (29%), Gaps = 24/294 (8%) Query: 28 SVSGESDIRPYDPNTQRRVVRERL-QALEIINERFARHFRMGLFNLLRRSPDITVGAIRI 86 + ++RP ++ R RL L+ L ++R+ + Sbjct: 11 KSNQGIEVRPVALIK-EKLARSRLLAQLDQCLRPIMDAVNELLHPIIRQGHH----GLSQ 65 Query: 87 QPYHEFARNLPVPTNLNLIHLKPLR-GTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145 + + L R G + +G P K R Sbjct: 66 VSLTTKTSSYVPELHHAWFLLSYNRIALGWWRIDKCTLDQLASGYYGAFASTP-KSPLRS 124 Query: 146 FTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFH 205 + +E R++ R++ A++ + LE+E + +E + F Sbjct: 125 PSQSEFRLVKRLMIAAIKRLPITEIDEDALELELLSNET--------PIKAPVCCELSFP 176 Query: 206 VEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANF 265 +G + + L L + D + L +++ L ++ Sbjct: 177 ---AAHSGPPMLFFMSEYLLGLMAELPSQYQ-----ADPALSEKLAHRLRQIPLRVLLEL 228 Query: 266 ADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 S L+ + L GDVLP+ R V P+ + T GQ ++ Sbjct: 229 GHQSTSLTSLQNLAVGDVLPMNLHSRCPVTVGKRPLFYATVHTHEGQMVAKLTQ 282 >UniRef50_Q1ZWR7 Putative flagellar motor switch protein n=2 Tax=Photobacterium RepID=Q1ZWR7_PHOAS Length = 257 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 89/281 (31%), Gaps = 36/281 (12%) Query: 40 PNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVP 99 ++++ L + +N L + +++ + + + Sbjct: 6 LGKPIHIIKDELANI--LNNSLLG-----LTDQIQKWVKTHELTMSVTSIDFQSPKQGQH 58 Query: 100 TNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLK 159 ++H G S L+ D + + + T ++ R+ R+ + Sbjct: 59 AAFTVLHNDG--GMMNFRCSAPLLIALADRFYHSPVNRLNSTKSQTITTSDLRLQERIGR 116 Query: 160 LALEGYS--DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNI 217 L + D W+ + + +DI + V G+ I Sbjct: 117 LFSAQIAPEDMWQPCDN------------------SLSDDIGLFIQLSVTCEETIGDIII 158 Query: 218 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 277 C+ ++I+ L ++ +Q++ ++++L + + L Q+L+ Sbjct: 159 CIDSALIQTLTSVIG-------LQPTSELNALFSQQLESTKVKLNTVLCEKQMPLDQVLQ 211 Query: 278 LNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 L PGD+ I+ + + NGQ L I Sbjct: 212 LKPGDIFDIDLLQSSPISIGQEHLFNGHVAEQNGQLVLIIN 252 >UniRef50_O67283 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67283_AQUAE Length = 182 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 15/195 (7%) Query: 129 NLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKF 188 + GG+ P ++EG+ F+ E ++ ++ + + + W +V Sbjct: 1 MMLGGE---PYELEGKPFSRLEMSMLTKLSESFCSTFREVWNEFFTRDVTDCELSEN--- 54 Query: 189 TNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRD 248 +D VE L + P +++ ++E L D R+ Sbjct: 55 -VYELDLDDDHYVAELGVENETLKRSLFLAFPLYLLKEIKEELSMRK------PDPKERE 107 Query: 249 NLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQY 306 L+ + + L +L++++ + G V+ K + + V G Sbjct: 108 ELLSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGKTPQEEVEVLVQGRLKFLGIL 167 Query: 307 GTLNGQYALRIEHLI 321 G NG+ A++I ++ Sbjct: 168 GEKNGKRAVKISKIL 182 >UniRef50_A8EW52 Flagellar motor switch protein FliY n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW52_ARCB4 Length = 289 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 95/286 (33%), Gaps = 27/286 (9%) Query: 57 INERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLV 116 ++ L LL + + ++ + + + +K L Sbjct: 5 LSNILKSELANTLEQLLSKKTKVD----SVEKFKNDTNLTQLIECNVKLDMKGLSSRIHF 60 Query: 117 VFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLE 176 + GG G ++ IN ++ +S A + Sbjct: 61 YIPAVSATKFEYLMLGGMGELKESIDDET-----TDAINEIISNICGSFSTLVNAQGLSD 115 Query: 177 VEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMI------------ 224 V ++SE++ + + F + + + + + ++ Sbjct: 116 VGSIKSEIKSTIKVENSVLSAKDDAYEFTISLDDEKYKLMVVFDKLLLPYFSAITGIYQE 175 Query: 225 EPLRELLVNPPLENSRNEDQNW----RDNLVRQVQHSQLELVANFADISLRLSQILKLNP 280 EP ++ + P+ N+ N + + + +L+L + L IL+ + Sbjct: 176 EPKVQVTPSTPVSNNTGSSNNSSVTPTSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDV 235 Query: 281 GDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 G+++ +E+ + + ++GV + + + G++ L+I+ +IN Sbjct: 236 GEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINED 281 >UniRef50_A1WGY8 Flagellar motor switch protein FliN n=19 Tax=Proteobacteria RepID=A1WGY8_VEREI Length = 163 Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 EP+R L S N + +V ++L + + IL+L G V+ Sbjct: 53 EPVRPPLAGAASGASAVNGGEQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVV 112 Query: 285 PIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 ++ + + V+G + + +N ++ +R+ ++ P Sbjct: 113 ELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSER 156 >UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L1_KINRD Length = 249 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Query: 223 MIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGD 282 +P P + + ++ Q+++ S+ + +L L PG Sbjct: 143 TAQPDTTPAPMPSFAPAGTPAPAGPRRTMDLLRDVQMDVTVELGRTSMTVQDLLALTPGS 202 Query: 283 VLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 V+ +++ V+G + + ++ YA+RI ++ P Sbjct: 203 VVELDRAAGSPADVLVNGQLIARGEVVVVDEDYAIRITEIVTPE 246 >UniRef50_A5P6I7 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6I7_9SPHN Length = 298 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 79/275 (28%), Gaps = 16/275 (5%) Query: 52 QALEIINERFARHFRMGLFNLLRRSPD-----ITVGAIRIQPYHEFARNLPVPTNLNLIH 106 L+I RF F L D +V A + P ++ + + Sbjct: 28 PELDIEFARFVSGFAENAQLQLAELCDDRGIATSVVATELLPVGDWYEQMGNARRHSYFS 87 Query: 107 LKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYS 166 L LV + + + GG G ++ + R ++ E Sbjct: 88 LGQESRGILVSVGIGELVAQFERILGGSGEVDERLGILPASA--ARFAHQFDDRVCEAMR 145 Query: 167 DAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIG--NLTGEFNICLPFSMI 224 + + E + + V + + + + SMI Sbjct: 146 RT-SDRREISASAIGDE---AEDVAPFALGEKVWTATIAISSSKSDRPWQVRLAACQSMI 201 Query: 225 EPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVL 284 L E + R + L L A D+ + ++++ L PG V+ Sbjct: 202 AELVE---KRAASPATGRTIGARGIGGSAIADVDLPLRAVLVDVPMSIARLASLEPGAVI 258 Query: 285 PIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 + + + + + G L+ + AL + H Sbjct: 259 QVAVNRSVPLQIGQLTIAHGCVGELDDRVALELTH 293 >UniRef50_B9Z4S5 Surface presentation of antigens (SPOA) protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z4S5_9NEIS Length = 291 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 12/214 (5%) Query: 108 KPLRGTGL-VVFSPSLVFIAVDNLFGGDGRF--PTKVEGREFTHTEQRVINRMLKLALEG 164 L G G+ V + L+ +D +GG P RE T TE+R+ + + Sbjct: 77 HRLDGAGIGVNVARPLLLRILDYRYGGRASPALPAAQPPRE-TETERRLARMLGERLTAR 135 Query: 165 YSDAWKAINPLEVEYVRSEMQVKFTNITTSPND-IVVNTPFHVEIGNLTG--EFNICLPF 221 A + ++ + + P D + + G + + L Sbjct: 136 LVQAVRRLS--RRPLPTLKAPPAVETLPFPPGDAPAWHMQLTLGEAGSGGASQIGLALDA 193 Query: 222 SMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPG 281 ++ + L + Q+ + L A + L L +IL L G Sbjct: 194 AVFAQVLRQLPLQAALPGPAAGKTLARPFAEQLS---IRLSARLMEKRLTLGEILDLRVG 250 Query: 282 DVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYAL 315 VLP+ + ++ V T+ +G+ L Sbjct: 251 SVLPVSLQQQADVYIGRTRVFTAAVAESHGKLCL 284 >UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L5A1_THERP Length = 128 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 208 IGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFAD 267 + + N S + P + + R++ + ++ ++EL A Sbjct: 1 MADRDDTLNRGQEPSSVRPPETPIQEARFVDLRDQPIGNGRQGIDFLRDVEVELTAELGS 60 Query: 268 ISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPIL 325 +R+ IL L PG V+ +++ + + ++ + + ++ ++A+RI +++P Sbjct: 61 ARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDEKFAVRITEIVSPEK 120 Query: 326 N 326 Sbjct: 121 R 121 >UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F0_COPPD Length = 287 Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 33/286 (11%), Positives = 88/286 (30%), Gaps = 20/286 (6%) Query: 65 FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLK-PLRGTGLVVFSPSLV 123 + +L R +IT GA+++ +++ ++ G G +V S L Sbjct: 1 MSDFIGSLKRLLSEITNGAVKLGNFYKTENLPSEQGEFVIVDFALGDFGDGFIVLSEDLA 60 Query: 124 FIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE 183 + + + T IN+ + A++ ++ + I + V + Sbjct: 61 KTLGNEMLRIFQLTVDNLNDDLVLSTIGEAINQSVNGAVQENAEQFGMIPSVSVGAAQVV 120 Query: 184 MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC-----------------LPFSMIEP 226 + + I V + N + + + Sbjct: 121 TAEALKEKVSGLSFIEVEGGLWFCVPNKLSSILLMGYSDVSERADAVSSEVEKTSASVMQ 180 Query: 227 LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI 286 ++ + D + + ++ + + + +L L G ++ + Sbjct: 181 ENDVEDVTFPQLRPEGDIQPLPRNLELLLDVKVNVSVELGRSRVSIKDLLSLGSGSIITL 240 Query: 287 EK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNE 330 +K + + V+G P+ + ++ + +RI +I P E Sbjct: 241 DKLAGEPVDILVNGKPIAKGEVVVIDESFGVRILDIIAPKERLKAE 286 >UniRef50_A1SEN5 Flagellar motor switch protein FliN n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN5_NOCSJ Length = 246 Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 57/176 (32%), Gaps = 19/176 (10%) Query: 151 QRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGN 210 + L A A ++ + V E+ F + +D+V Sbjct: 85 AAALQPSLDAAATALGARSGAARQVDPDTVVDEIAEPFVIVPLEGSDVVAA--------- 135 Query: 211 LTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISL 270 + +P +++ + P L + + + +E+ + Sbjct: 136 ------LLVPEALLAHPADD--TPALPTTSAAAPTGDRRGIEMLHGVDMEVTVEIGRARM 187 Query: 271 RLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 + ++L L PG VL +++ V+G + + ++ + LRI ++ Sbjct: 188 TVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDEDFGLRITEIVTDS 243 >UniRef50_B6WWJ4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WWJ4_9DELT Length = 234 Score = 90.8 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 79/225 (35%), Gaps = 22/225 (9%) Query: 1 MGDSILSQAEIDALLNGD--SEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIIN 58 M SILSQ EI ALL+G + KD P A + +D L+ + Sbjct: 1 MS-SILSQEEIAALLHGLPAAGGKDVPPAEAAAPADGE---------------ARLDALA 44 Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 R AR + R ++T +R +P+ A + + + L+ L L+V Sbjct: 45 ARCARLCAASMEEQRGRLLELTPLPVRRRPFGSVADGIREASCCCAVDLEGLEEPALLVL 104 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 + VF ++ FG G R T E + + L + A K + Sbjct: 105 DRAFVFSLLEEFFGAGGFERPG--RRPLTALETMLARKFADRFLAAFDLAGKP-SSWHPR 161 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSM 223 S + + V + F +G G ++CLP Sbjct: 162 CGHSLSLPRLA-VLVPDEQPVWHLAFRSLLGGRPGALHLCLPEDF 205 >UniRef50_A3VIM0 Possible flagellar switch protein FliM n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VIM0_9RHOB Length = 378 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 74/242 (30%), Gaps = 21/242 (8%) Query: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREF 146 + + LI P GL++ P + ++ G P R Sbjct: 58 TTLAPIVEGIGEHALMALIE-GPEGRYGLILVDPDTLAALIEIQTTGR-VVPRPATARPP 115 Query: 147 THTEQRVINRMLKLALEGYS--DAWKAINPLEVEYVRSEMQVKFTNITTSPN------DI 198 T T+ + + LE A I + + + P Sbjct: 116 TRTDAIMCADFIDRVLELLEDRTAEADI-DIAPALGGFRYALALSEARAIPMTLDDVPYR 174 Query: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQ 258 + + G G ++ LPF+ + + + + L V ++ Sbjct: 175 RFHVSLDLGRGAKQGTLDVILPFN-------AAPSGAAAATNADPAGFTQALAEVVGEAE 227 Query: 259 LELVANFADISLRLSQILKLNPGDVLPIEKPDRIIA---HVDGVPVLTSQYGTLNGQYAL 315 + L + + L+++ L+ G V+PI + ++G V + G G A+ Sbjct: 228 VLLRGTLHRLQMPLAEVAGLSVGSVIPIPREALGQVAIEDINGRTVKHGRLGMSGGHRAI 287 Query: 316 RI 317 RI Sbjct: 288 RI 289 >UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Deltaproteobacteria RepID=Q6MI47_BDEBA Length = 122 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Query: 231 LVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK-- 288 + + +E +D + + L++ + +S++L L G V+ + K Sbjct: 20 MAESSGRKASSEMPTHKDRNLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLA 79 Query: 289 PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 + + +V+ + + +N ++ +R+ +I+P Sbjct: 80 GEPMEVYVNDKLIARGEAVVVNEKFGVRLTDIISPAER 117 >UniRef50_C7R0I7 Flagellar motor switch protein FliN n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0I7_JONDD Length = 259 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 17/224 (7%) Query: 104 LIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALE 163 + + L G+ F L +D L + T+ R E + + Sbjct: 42 VTYGYQLVGSTHYAFGLYLGQGIIDALSDSSEQINTRAAVRP--ALE-AAAQHFGQGIIN 98 Query: 164 GYSDAWK---AINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLP 220 +A I P+ + V + IT + V T + P Sbjct: 99 DLDEAPSLTEGIAPVSFTLKSGDSTVGW--ITFHNREDVPVEKPSPAASARTAQAEPSAP 156 Query: 221 FSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNP 280 EP P + + +D+ R + ++ L L + Q+L L P Sbjct: 157 SPT-EPEIRPFTPPMMGSGTGDDKL------RLLYDVEMTLTVEIGRAKLPVRQVLDLTP 209 Query: 281 GDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 G ++ +++ V+G V + ++ Y LR+ +I+ Sbjct: 210 GSIVELDRVAGAPADLLVNGHLVARGEVVVVDEDYGLRVTEIID 253 >UniRef50_C7DD19 Putative uncharacterized protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DD19_9RHOB Length = 326 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 87/268 (32%), Gaps = 19/268 (7%) Query: 59 ERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVF 118 + AR R ++ + G E A L L ++ + ++ Sbjct: 28 DVLARAMRRAADFVVGMPVLLKGGEASEVSLVELAEQLNEQD-LTMMLIGRDGARAIMTC 86 Query: 119 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVE 178 +V ++ G R T T+ +I L L S + + Sbjct: 87 DGPMVSALIEMSTIGH-VTTANSAARRMTRTDVALITPFLGQVLVEVSGGDADVPVTSLM 145 Query: 179 YVRSEMQVKFTN-----ITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVN 233 EM I V + + G+ TG +CLP + Sbjct: 146 SGYDEMTRVLDVCTVELIMPQVQYHVYDLSLELGQGSKTGRVMLCLPKRA---------S 196 Query: 234 PPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRII 293 + +++ +NW+ ++ V +L A +S+ LS++ GD++ + Sbjct: 197 QDEKIAQDTAKNWKASVEATVLDLPSQLDAVLHTVSMPLSEVRAFAVGDMIKMAASSLKT 256 Query: 294 AHVDG---VPVLTSQYGTLNGQYALRIE 318 V G + T++ G ++G AL + Sbjct: 257 VQVRGLDSQTITTARLGQVHGTRALCLN 284 >UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Proteobacteria RepID=C6BUR6_DESAD Length = 229 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 228 RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 R+ ++N + + + L++ A + ++++L+L G V+ + Sbjct: 124 RDADFKDLTNEAKNPRHDGSRRDLDFILDIPLDVSAELGRAKMLINELLQLGTGSVVELT 183 Query: 288 K--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 K + + +V+G V + +N ++ +R+ +I+PI Sbjct: 184 KLAGEPLEIYVNGKLVARGEAVVINEKFGIRLTDIISPIER 224 >UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein n=4 Tax=Deltaproteobacteria RepID=Q30VB8_DESDG Length = 175 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Query: 228 RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 R++ E +++ + + + L++ A L ++++L+L G V+ + Sbjct: 70 RDMEFKDLTEEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELN 129 Query: 288 K--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 K + + +V+G V + +N ++ +R+ +I+PI Sbjct: 130 KLAGEPLEIYVNGKLVARGEAVVINEKFGVRLTDIISPIER 170 >UniRef50_A9FKL0 Surface presentation of antigens (SPOA) protein n=8 Tax=Rhodobacterales RepID=A9FKL0_9RHOB Length = 460 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 85/279 (30%), Gaps = 21/279 (7%) Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122 R +L + + + +L L ++ P G Sbjct: 42 RSIARAAADLCDLPVAVLAARQANRIPEDLPPHLSDKHLLVVLD-GPNGRIGAATLDAPT 100 Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEY--- 179 V + G E R +T T+ ++ L+ E + Sbjct: 101 VTALIQQQTMGQVLGKAPSE-RNYTPTDAAMVADFLERTFAKVVSMLAQQKD-EAIFSGY 158 Query: 180 ---VRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPL 236 + E + + V+ + G + G + LP EP E L Sbjct: 159 RFGAQVEDVRSLVLGLEAEDYRVIELTLDLACGAMQGGLTLILP----EPSPEDLGEAGQ 214 Query: 237 ENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKP---DRII 293 + +L + + EL A + + ++ L GD+LP+++ + + Sbjct: 215 NAHQAG-----PSLGSNMGSMRAELRAVLCRMKVPANEFSALEEGDLLPLDQAFLYETEM 269 Query: 294 AHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQ 332 + G + + G +NG A+R+ ++N ++ Sbjct: 270 ISISGQAIAQGRLGQMNGARAVRLTDPRTKLVNDRAADE 308 >UniRef50_P26419 Flagellar motor switch protein fliN n=125 Tax=Enterobacteriaceae RepID=FLIN_SALTY Length = 137 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNG 311 + ++L + + ++L+L G V+ ++ + + ++G + + + Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 312 QYALRIEHLINPILN 326 +Y +RI +I P Sbjct: 117 KYGVRITDIITPSER 131 >UniRef50_P15070 Flagellar motor switch protein fliN n=15 Tax=Proteobacteria RepID=FLIN_ECOLI Length = 137 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNG 311 + ++L + + ++L+L G V+ ++ + + ++G + + + Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 312 QYALRIEHLINPILN 326 +Y +RI +I P Sbjct: 117 KYGVRITDIITPSER 131 >UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UW94_9AQUI Length = 164 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 249 NLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQY 306 L+ ++ L + + +++ +++ L PG VL +++ + + V+G + + Sbjct: 72 KLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRETTEPVDIKVNGKLIAKGEL 131 Query: 307 GTLNGQYALRIEHLINPILNSLNEE 331 + ++ +RI + + S+ + Sbjct: 132 VVVGEKFGVRITEIYSEERKSVFRD 156 >UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67K24_SYMTH Length = 126 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + +LEL L +IL + PG VL ++K + + V+G V + + Sbjct: 49 LADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGE 108 Query: 312 QYALRIEHLINPI 324 Y +RI LINP Sbjct: 109 NYGIRITELINPE 121 >UniRef50_Q3BU42 Flagellar motor switch/type III secretory pathway protein FliN n=9 Tax=Xanthomonas RepID=Q3BU42_XANC5 Length = 112 Score = 87.3 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 227 LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPI 286 + + +DQN D + + + L + + +L+LN G V+ + Sbjct: 6 ILDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVEL 65 Query: 287 EKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 E+ + + +V+G + + +N ++ +R+ +++P Sbjct: 66 ERGAGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSER 107 >UniRef50_Q0AEF2 Flagellar motor switch protein FliN n=12 Tax=Proteobacteria RepID=Q0AEF2_NITEC Length = 157 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Query: 235 PLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRI 292 + SRN N N + + ++L + + +L+L G V+ ++ + + Sbjct: 58 FEQFSRNNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPM 117 Query: 293 IAHVDGVPVLTSQYGTLNGQYALRIEHLINPILN 326 V+G + + +N ++ +R+ +I P Sbjct: 118 DVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSER 151 >UniRef50_B9PA59 Predicted protein n=2 Tax=cellular organisms RepID=B9PA59_POPTR Length = 284 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + L + + + +L+L G V+ ++K + + ++ V + +N Sbjct: 206 LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 265 Query: 312 QYALRIEHLINPILN 326 +Y +R+ +++PI Sbjct: 266 KYGVRLTDIVSPIER 280 >UniRef50_B5KD54 Surface presentation of antigens protein n=2 Tax=Octadecabacter antarcticus RepID=B5KD54_9RHOB Length = 330 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 76/264 (28%), Gaps = 18/264 (6%) Query: 63 RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRG-TGLVVFSPS 121 R S + + P + + L G TGL + Sbjct: 35 RALGRAADKAAGLSVSVLGISEEDMDAESLIEGGPEGWVVLGLRDGSLAGLTGLFLLDQP 94 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEV---E 178 L V+ G P + R T + + L ++ LE + Sbjct: 95 LRSALVEMQTMGS-LLPPSDDQRRVTRVDAVMTLPFASQVLAELAEVGFGAADLEPAAYD 153 Query: 179 YVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLEN 238 + + N + + G GE I + + Sbjct: 154 IGPIDDLRTAGLVMVQGNYRICRITIQMGGGETQGEMLIAM----------RPKVSVVTA 203 Query: 239 SRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHV-- 296 + W L VQ + EL A +++ + ++ G VL + + Sbjct: 204 PVKDTSGWSVALRDAVQEAPAELDAILTRMTMPIHKLEGFEVGQVLNLAGTTVGSVTLTG 263 Query: 297 -DGVPVLTSQYGTLNGQYALRIEH 319 G+ + T++ G + G+ A+R++H Sbjct: 264 PGGIIITTARLGQVAGKRAVRVQH 287 >UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B0 Length = 130 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 228 RELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE 287 E+ + + + N + ++ +EL + + + L+L PG ++ + Sbjct: 3 HEMELPAFDRPTAANGSHTGQNDLGRLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLN 62 Query: 288 K--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLI 321 + + + V+G P+ + ++ ++ LRI ++ Sbjct: 63 RMAGEPVDLLVNGTPIAHGEVVVIDEEFGLRITDVL 98 >UniRef50_P35539 Flagellar motor switch protein fliN (Fragment) n=77 Tax=Proteobacteria RepID=FLIN_PECCC Length = 106 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNG 311 + ++L + + ++L+L G V+ ++ + + ++G + + ++ Sbjct: 26 ILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD 85 Query: 312 QYALRIEHLINPILN 326 +Y +RI +I P Sbjct: 86 KYGVRITDIITPSER 100 >UniRef50_Q51466 Flagellar motor switch protein fliN n=23 Tax=Proteobacteria RepID=FLIN_PSEAE Length = 157 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 4/122 (3%) Query: 209 GNLTGEFNICLPFSMIEP--LRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 ++ + EP R + + + + + Sbjct: 31 DDIDALMAQGGATPVAEPSTPRAPMEEFGASPKAPTISGLEGPNLDVILDIPVTISMEVG 90 Query: 267 DISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPI 324 + + +L+LN G V+ +++ + + V+G + + +N ++ +R+ +I+P Sbjct: 91 HTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPS 150 Query: 325 LN 326 Sbjct: 151 ER 152 >UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1A4_SPHTD Length = 144 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 ++ ++EL A +++ IL L PG V+ + + + + V+ + + ++ Sbjct: 66 LRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDE 125 Query: 312 QYALRIEHLINPILN 326 ++A+R+ ++ P Sbjct: 126 KFAVRVVEIVPPERR 140 >UniRef50_Q1D0N5 Type III secretion system apparatus protein YscQ/HrcQ n=2 Tax=Cystobacterineae RepID=Q1D0N5_MYXXD Length = 416 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 51/309 (16%), Positives = 95/309 (30%), Gaps = 41/309 (13%) Query: 15 LNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERL-------------QALEIINERF 61 L+ +E + +RP RR+ R L +AL+ + Sbjct: 28 LDAAAEPPMNTRIEHAASRKVRPLRRLGARRLTRAHLVLAERPQAGSLGREALDAVMAAL 87 Query: 62 ARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPS 121 R + R + ++ L P L+ L + GT ++ P+ Sbjct: 88 TRELGCPVHAEARILESVVSPSV----------GLGEPAIFALLELSAVGGTAVLELEPA 137 Query: 122 LVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR 181 L F+ ++ + G G+ P V E E+ + +L +AL A A L Sbjct: 138 LAFMGLERIAGA-GQRPGVVT--ELARLEEATLAYVLLVALSAVRAAGGAYPWLGPRLAG 194 Query: 182 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRN 241 M P + +V V +G + LP +++ + + L Sbjct: 195 VTMSRSDVVARLDPREPLVGIELMVTVGESRAGARLLLPSQVVQTVFQALPVERAPG--- 251 Query: 242 EDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPV 301 + +V + LE L + + L GDV+ + + G Sbjct: 252 --------IAPEVLAASLEARCLVGQTPLSANALDALVVGDVVVF---EGVRTQA-GQLF 299 Query: 302 LTSQYGTLN 310 + T Sbjct: 300 GPGRLVTRG 308 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 2/108 (1%) Query: 217 ICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL 276 L + L + D + + +++ + + LS++ Sbjct: 309 FALSGDFLAEGFSLTRAQGRGIPQESDMVVVNKQEEGMPPLPVDVEIELTRVMIPLSELA 368 Query: 277 KLNPGDVLPI--EKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 L PG +LP+ + ++ V V ++ + G+ R+ L+ Sbjct: 369 ALKPGALLPLHINASEPVVLRVGDRAVARAELVEIEGEVGARVLALLP 416 >UniRef50_Q0FKH8 Possible flagellar switch protein FliM n=3 Tax=Rhodobacteraceae RepID=Q0FKH8_9RHOB Length = 396 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 21/226 (9%) Query: 101 NLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL 160 L ++ P G+ ++ ++ VE R T T+ ++ +L Sbjct: 72 ALLILLDGPDGVPGVARIERPVMTGLIEVQTILQ-VTQMPVEERPLTQTDAAMMAPLLDS 130 Query: 161 ALEGYSDAWKAINPLEVEYVR------SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGE 214 ALE + + +PL+ + E + + + +G TGE Sbjct: 131 ALERFERYLED-HPLQPQIAGFRFGAMVEDSRTAGLLLDASGYRAFRVSLDLALGRRTGE 189 Query: 215 FNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQ 274 + LP D ++++ + + A + L LS Sbjct: 190 LALFLPD----------RAEAAAADEAGDLGQEGPHEQKMKLLPVHMDAVLHRLVLPLSA 239 Query: 275 ILKLNPGDVLPI--EKPDRIIAHVD-GVPVLTSQYGTLNGQYALRI 317 KL PGD++P+ E D + G V + G +NG A+R+ Sbjct: 240 AEKLQPGDLIPLPPEALDGVELLAGDGSGVAGGRLGQINGMRAVRL 285 >UniRef50_A6D2B3 Putative flagellar motor switch protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D2B3_9VIBR Length = 270 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 100/297 (33%), Gaps = 38/297 (12%) Query: 27 ASVSGESDIRPYD---PNTQRRVVRERLQALEIINERFARHFRMGLFNLLR-RSPDITVG 82 ++ + ++R + LE + + + L L+ + + + Sbjct: 2 QKTEMPEQVQTLNVELLGKPIHIIRNK---LEELLINSCQQLSLELQAWLKTQQVLVELD 58 Query: 83 AIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVE 142 + E + T+++++ G V P+++ D + + Sbjct: 59 HV---SLTELPQTNVDVTSVSVLKHSD-DGMLYVSMEPTMLMRLSDQFY----STSMERS 110 Query: 143 GREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNT 202 G E T+++ R++ R+ K A + + + E+ I + Sbjct: 111 GGELTNSDLRLLQRIAKCASQWIA------PETTWKQHEFEVIPG----------IGIAA 154 Query: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 + + + + L ++I+ L + L + + + + + + L Sbjct: 155 KLSIYVRSQQALLAVTLDSALIQTLIDEL-------ELTPNPHMASDFNHALHKTPVRLN 207 Query: 263 ANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEH 319 + L L+Q+LKL D+LPIE + ++ + T + GQ L + Sbjct: 208 VQLSKTVLPLTQVLKLKADDILPIELLNNAPVNIGKETLFTGRVAEQEGQLVLILND 264 >UniRef50_A6D5X8 Flagellar basal-body rod protein B n=1 Tax=Vibrio shilonii AK1 RepID=A6D5X8_9VIBR Length = 255 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 33/236 (13%) Query: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE-- 145 + E P + +++++ G P I + + PT+ R Sbjct: 47 SFSEA-HKPPKNSIKTVLNIEDF-GHVFFFIEPQAADILLYKHL--NTPSPTRKSKRSSS 102 Query: 146 ---FTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNT 202 T T R+ ++ + + VE+ P+DI Sbjct: 103 DTTLTQTHLRLFQKLTMAITNILT---ADASHYAVEHTDH-----------QPSDIGTTI 148 Query: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 F + + L ++ LR+++ + + R+ ++ +++ +EL Sbjct: 149 TFSFD--EQQIDITFMLDDRYVKKLRDVMESNETFD--------REEILNNLRYQPVELG 198 Query: 263 ANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIE 318 L ++ KL PGD +P+ + V+G P + ++N + + I+ Sbjct: 199 CVMLHGQCTLHELSKLQPGDFMPMTLCKNLTVKVNGHPTFFGKLQSINSELGVEID 254 >UniRef50_Q3SIG7 Flagellar motor switch/type III secretory pathway protein FliN n=17 Tax=Proteobacteria RepID=Q3SIG7_THIDA Length = 132 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAHVDGVPVLTSQYGTLNG 311 + + L + + +L+L G V+ ++ + + V+G + + +N Sbjct: 52 ILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 111 Query: 312 QYALRIEHLINPILN 326 ++ +R+ +I P Sbjct: 112 KFGVRLTDIITPAER 126 >UniRef50_Q01PP4 Flagellar motor switch protein FliN n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PP4_SOLUE Length = 282 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 59/178 (33%), Gaps = 19/178 (10%) Query: 156 RMLKLALEGYSDAWKAINPLEVEYV-RSEMQVKFTNITTSPNDIVVNTPFHVE------- 207 +L +L G + A + EV +E ++ + Sbjct: 104 EILGQSLSGLALAIGGVLSREVACEAGTERAPDAMP------EMAASVTLSFGETTLVPL 157 Query: 208 -IGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 IG ++ + +P ++ + + + +L + +F Sbjct: 158 WIGFSAPLISVICSPAAGQPEAAPEDAGGEPHTVKRNDM--PPTMELLLDVELPVSISFG 215 Query: 267 DISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 + + +LKL G ++ + + + + V+ + + + G Y +RI+ ++N Sbjct: 216 KTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVVVVEGNYGVRIQQIVN 273 >UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP8_ACTMD Length = 250 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 254 VQHSQLELVANFADISLRLSQILKLNPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNG 311 + ++E+ A L + ++L L+ G V+ +++ V+G + + ++ Sbjct: 171 LHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVVIDE 230 Query: 312 QYALRIEHLINPIL 325 + +R+ +I P Sbjct: 231 NFGIRVTEIIKPGD 244 >UniRef50_D0CWA9 Surface presentation of antigens protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CWA9_9RHOB Length = 331 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 20/263 (7%) Query: 65 FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVF 124 R S + + L + L L+ + + P LV Sbjct: 3 LARAAVERFRLSASVIGAKQSGRRQEAVTEGLDE-SRLFLLFAADEQRVACLAMDPGLVA 61 Query: 125 IAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALE---GYSDAWKAINPLE-VEYV 180 + G+ P R+FT T+ ++ +++ L + + L E++ Sbjct: 62 AVIQKQTIGE-VSPDPPPVRKFTDTDAAIVAPLVEEMLARGAQLVEEPEDKARLSGYEFL 120 Query: 181 RSEMQVKFTNITTSPN-DIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS 239 ++ ++ + V + +E G G ++ LP +P ++ Sbjct: 121 SRASGLRAVSLALVQDVYDVFDLTVELEGGVRQGVVSLLLPPQSAKP----------DSH 170 Query: 240 RNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIE--KPDRIIAH-V 296 + L + EL A A + L LS++ L G VLP+ + DRI + Sbjct: 171 EEQGAEGGAKLADASGVLRAELTAVIAQMHLPLSELSALTEGKVLPLSNARLDRIAMQAI 230 Query: 297 DGVPVLTSQYGTLNGQYALRIEH 319 D V T + G G A+R+ Sbjct: 231 DRTRVATGRLGQCGGMRAVRLNE 253 >UniRef50_D1BCL8 Flagellar motor switch protein FliN n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCL8_SANKS Length = 247 Score = 85.0 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 11/166 (6%) Query: 160 LALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLT-GEFNIC 218 + A +A + E V E Q++ +D+ V F +E + G F + Sbjct: 84 SVADALRPALEAASATLGEGVLGEAQIRDAGTAFGADDVHV---FALEAAGVVRGWFGLR 140 Query: 219 LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKL 278 + ++++ + + +R + ++ L A L + Q+L+L Sbjct: 141 -----LRADQDVVPAAQAGAAGTSKGASVGDNLRLLYDVEMTLSAEIGRAKLPVRQVLEL 195 Query: 279 NPGDVLPIEK--PDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLIN 322 PG V+ +++ V+G + + ++ Y LRI +++ Sbjct: 196 VPGAVIELDRVAGSPADLMVNGRLIARGEVVVIDEDYGLRITEIVD 241 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.142 0.347 Lambda K H 0.267 0.0434 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,778,336,504 Number of Sequences: 3077464 Number of extensions: 68298269 Number of successful extensions: 229348 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 736 Number of HSP's successfully gapped in prelim test: 431 Number of HSP's that attempted gapping in prelim test: 226466 Number of HSP's gapped (non-prelim): 1380 length of query: 334 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 205 effective length of database: 643,403,500 effective search space: 131897717500 effective search space used: 131897717500 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 93 (40.4 bits)