28 c1ltxR_ Probab=99.75   E-value=8.1e-15  Score=115.18  Aligned_columns=351  Identities=14%

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH--------------------------------
Q ss_conf             779828999971899999999998898699995798632545532043--------------------------------
Q batch____       262 SSKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQG--------------------------------  309 (668)
Q Consensus       262 ~~~~~VvVIGAGIaGls~A~~La~rG~~VtVlE~~~~~~~gASg~~aG--------------------------------  309 (668)
                      ++..|||||||||+||++|+.|+++|++|+|||+.+.+|+.++...-.                                
T Consensus         5 p~~~DVvVIGaG~aGL~aA~~La~~G~~V~vlEa~~~~GG~~~s~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   84 (494)
T c1ltxR_           5 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENTENSMWQEQILENEEAIPLS   84 (494)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHTTTCCCCCCCGGGGSCTTEEEEEBC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             74378899989888999999999879809999678899712799852770432146322565421222223442001133


Q ss_pred             ------------------------------------EEECCCCCCCCHHHHHHHH-------------------------
Q ss_conf             ------------------------------------0204368888989999999-------------------------
Q batch____       310 ------------------------------------ALYPLLSKHDEALNRFFSN-------------------------  328 (668)
Q Consensus       310 ------------------------------------~l~p~l~~~~~~~~rl~~~-------------------------  328 (668)
                                                          -+.|........+......                         
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (494)
T c1ltxR_          85 SKDKTIQHVEVFCYASQDKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQ  164 (494)
T ss_dssp             SSCCCEEEEEEEECSTTCCCCCCHHHHHHTGGGCCEESSCCCEETTSHHHHHHHHHTGGGGCCEEEEEEEEEEETTEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             22333332331111465554312223211010023331213444014888976442856556556444210200140211


Q ss_pred             -----------------HHHHHHHHHHHCCCCCCEEECC-----------EEEECCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             -----------------9999999998729766655337-----------799818999999999999769876511427
Q batch____       329 -----------------AFTFARRFYDQLPVKFDHDWCG-----------VTQLGWDEKSQHKIAQMLSMDLPAELAVAV  380 (668)
Q Consensus       329 -----------------a~~~~~~l~~~l~~~~~~~~~G-----------~l~la~~~~~~~~~~~~~~~~~~~~~~~~~  380 (668)
                                       ......++...+..........           +-....++...+.+......-.........
T Consensus       165 ~p~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (494)
T c1ltxR_         165 VPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSTSCTVDGL  244 (494)
T ss_dssp             CCCSHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGCGGGTGGGTTSBHHHHHHHSSCCHHHHHHHHTTTSCCCCCBHHHHH
T ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             45896787216564303444345677775235667588643215968899988389999999999999751478824799


Q ss_pred             CHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCC---CCCEEEEEECCEEEEECCCH
Q ss_conf             988856654887555568833523236699998778888856947965431023210---58358876110136611420
Q batch____       381 EANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSR---KDDCWLLNFAGDQQATHSVV  457 (668)
Q Consensus       381 ~~~~~~~~~~~~~~~~gl~~p~~g~i~p~~l~~al~~~~~~~g~~i~~~~~v~~i~~---~~~~~~~~~~~~~~~~ad~V  457 (668)
                      ......-..-.....+...++.+|.   ..+.+++++.+...|.++..++.|..+..   .+....+.+.++..+.+|+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~gG~---~~l~~~l~~~l~~~Gg~i~l~~~V~~I~~~~~~~~~~~v~~~~g~~~~a~~V  321 (494)
T c1ltxR_         245 KATKKFLQCLGRYGNTPFLFPLYGQ---GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHF  321 (494)
T ss_dssp             HHHHHHHTTTTSSSSSSEEEETTCT---THHHHHHHHHHHHTTCEEETTCCEEEEEEETTTCCEEEEEETTCCEEECSEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCH---HHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCEEEEEEECCCCEEEECEE
T ss_conf             9999999996530668558864887---8999999999740487088304226999838897699999379839990789


Q ss_pred             HHCCCCCHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCC-------
Q ss_conf             1115722134355418853432158999966866544836872797699972799849996221248888899-------
Q batch____       458 VLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDTAY-------  530 (668)
Q Consensus       458 V~AaG~~a~~L~~~~~lpl~pvRGqv~~l~~~~~~~~~~~~i~~~gy~~p~~~~~g~~iiGaT~~~~~~~~~~-------  530 (668)
                      |+++++.......  ..+...+...+..+..+............-..-..........++-.+++....+..-       
T Consensus       322 I~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~g~~~l~~~~  399 (494)
T c1ltxR_         322 IIEDSYLSENTCS--RVQYRQISRAVLITDGSVLKTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTC  399 (494)
T ss_dssp             EEEGGGBCTTTTS--SCCCEEEEEEEEEESSCSSCCSSCCCEEEEEECCCSSSCCCEEEEEECGGGSSSCTTCEEEEEEE
T ss_pred             EECCCCCCHHHHC--CCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf             9868403636431--35555304799997023456777652699963635587771899981388674887857999998


Q ss_pred             --CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             --889999999999987310013344576445754565300589882253136432233444555665545555677897
Q batch____       531 --SEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDD  608 (668)
Q Consensus       531 --~~~~~~~~l~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~TpD~lPivG~v~~~~~~~~~y~~~~~~~~~~~~~p~~~g  608 (668)
                        ...+.+...+.+.++++...................+...+-..|.--..+                         +|
T Consensus       400 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~g  454 (494)
T c1ltxR_         400 MSSKTAREDLERVVQKLFTPYTEIEEKPRLLWALYFNMRDSSDISRDCYNDLP-------------------------SN  454 (494)
T ss_dssp             ECSSCHHHHHHHHHHHHCEECCSCCCCCEEEEEEEEEEEECCSCCGGGSSSCC-------------------------TT
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC-------------------------CC
T ss_conf             17998089999999998641145554746998655512677765555443668-------------------------88


Q ss_pred             EEEEEC-CCCCHHHHHHHHHHHHHHHHCCCCC-CCC
Q ss_conf             799967-8862589999999999999837499-999
Q batch____       609 LFMFAA-LGSRGLCSAPLCAEILAAQMSDEPI-PMD  642 (668)
Q Consensus       609 l~v~~G-~gs~Gl~~Apl~ae~LA~~i~G~p~-Pl~  642 (668)
                      ||++.+ .++-|+-.+.-.|+-+++.|+|+.. |-+
T Consensus       455 l~~~g~~~~~~~~~~av~sa~~~~e~i~~~~~~~~~  490 (494)
T c1ltxR_         455 VYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFPED  490 (494)
T ss_dssp             EEEECCCCSSSSSHHHHHHHHHHHHHHSSSCCCCCC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             899778888899889999999999997489998710