54 d2hoxa1 Probab=99.96   E-value=4.7e-27  Score=180.28  Aligned_columns=303  Identities=17%

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHC--------CCCEEEEECCHHHHHHHHHHHHCCCCCE--------EEEECCCCHH
Q ss_conf             32244413578867999999999970--------8987999899899999999996289989--------9983887335
Q batch____        40 EPRAHDYSRRGNPTRDVVQRALAELE--------GGAGAVLTNTGMSAIHLVTTVFLKPGDL--------LVAPHDCYGG  103 (386)
Q Consensus        40 ~~~~~~y~r~~~p~~~~le~~~a~~~--------g~e~~i~~~sG~~Ai~~~l~al~~~Gd~--------Vi~~~~~~~~  103 (386)
                      +...|+|.+.++|+.+.|++.++++.        ..+++++++|+++++++++.+|++|||.        |++..|.|..
T Consensus        88 ~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~  167 (425)
T d2hoxa1          88 HRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV  167 (425)
T ss_dssp             TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf             54565456643445289999999998850886788776999468899999999986488861235677435730023778


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-CCC
Q ss_conf             6776565313550488972899999998731136762143002333211454899999998669289997885347-322
Q batch____       104 SYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSP-ALQ  182 (386)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~~v~~~~~~n~~g~~~~l~~i~~la~~~g~~vivD~a~a~g-~~~  182 (386)
                      .............--..     |.+.++..++++++++++++|+||+|.+.+       |.++|+++|+|++|..+ ...
T Consensus       168 ~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~~~~~~~  235 (425)
T d2hoxa1         168 FREQTKYFDKKGYVWAG-----NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTP  235 (425)
T ss_dssp             HHHHHHHSCCTTEEEEE-----EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSC
T ss_pred             HHHHHHHCCCCCCCCCC-----CHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCCCCCCCCC
T ss_conf             99999855997444247-----988999724888579998178888560654-------232396899714323433233


Q ss_pred             CHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH---------------H
Q ss_conf             1033189879972243467875401027862878998877620014587678677898871332---------------1
Q batch____       183 NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---------------T  247 (386)
Q Consensus       183 ~~~~~g~D~~~~s~~K~~~g~~~~~~g~~~~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~---------------~  247 (386)
                      .+....-++++.|.+|.+ +..|.+.||++..++.+...+...+.......+..........++               .
T Consensus       236 ~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~  314 (425)
T d2hoxa1         236 IKYKADEDILLFTMSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDL  314 (425)
T ss_dssp             CCSCBCCSEEEEEHHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSH
T ss_pred             CCCCCCCEEEEEECCCCC-CCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             334568549998155101-2332310189968989999999864105777368999999999602013456555548999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEECCC
Q ss_conf             79899999999999999984068878620100266813366433104788479999429888999999851124847434
Q batch____       248 LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESL  327 (386)
Q Consensus       248 ~~~~~~~~~~~a~~l~~~L~~~~~i~~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~L~~~~i~~s~  327 (386)
                      +........++...+...|...   .....+.++...............+..+|+.++.  ...+.+...|+..||.++.
T Consensus       315 ~~~~r~~l~~r~~~l~~~L~~~---~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~--~~~~~~~~lL~e~GI~v~p  389 (425)
T d2hoxa1         315 NTFGFKKLRERWVNITALLDQS---DRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCYQTFQNGRINTQN  389 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS---SSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--GGGCSHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC--CCHHHHHHHHHHCCEEEEC
T ss_conf             9999999999999999998635---7630034565543221001377876169986789--8089999999966949971


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEC--CCHHHHHHHHHHHHHH
Q ss_conf             744442122321135657878998669996759999834--9989999999999998
Q batch____       328 GGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRA  382 (386)
Q Consensus       328 G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~dli~~L~~Al~a  382 (386)
                      |..+                      |..+++||||+..  |+.++++++|++.+++
T Consensus       390 Gs~F----------------------G~~~~~vRiSl~~~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         390 GVGF----------------------EASSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             GGGG----------------------TSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             CCCC----------------------CCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             7023----------------------8988659999139989999999999998726