Phyre 2 alignment of P21338 with c1s1iT_

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Job Description | P21338
Confidence | 10.26% | Date | Thu Jan 5 11:38:03 GMT 2012
Rank | 22 | Aligned Residues | 35
% Identity | 11% | Template | c1s1iT_
PDB info | PDB header:ribosome | Chain: T: PDB Molecule:60s ribosomal protein l25; | PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
Resolution | 11.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | T | M | V | R | L | N | Q | E | I | K | E | S | E | A | G | K | F | L | A | D | N | Y | G | K | T | V | S | R | R | D | F | D | A | A | F | A | K | S | W | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | T | A | M | K | K | V | E | D | G | N | I | L | . | . | . | V | F | Q | V | S | M | K | . | . | . | A | N | K | Y | Q | I | K | K | A | V | K | E | L | Y | E
Template Known Secondary structure |  |  |  |  |  |  |  | T | T | S | S | S |  |  | . | . | . |  |  |  |  |  | S | S | . | . | . |  |  | T | T |  |  |  |  |  |  |  | T | T | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 69 | 70 | . | . | . | . | . | . | . | . | . | 80 | . |  |  |  | . | . | . | . | . | . | . |  |  |  | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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