Phyre 2 Results for P21338

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P21338
Date | Thu Jan 5 11:38:03 GMT 2012
Unique Job ID | ccadd883d79760cc

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2pqxA_
Top template information
PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease i; PDBTitle: e. coli rnase 1 (in vivo folded)
Confidence and coverage
Confidence: | 100.0% | Coverage: | 91%
245 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | A | F | W | R | N | A | A | L | L | A | V | S | L | L | P | F | S | S | A | N | A | L | A | L | Q | A | K | Q | Y | G | D | F | D | R | Y | V | L | A | L | S | W | Q | T | G | F | C | Q | S | Q | H | D | R | N | R | N | E | R | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | C | R | L | Q | T | E | T | T | N | K | A | D | F | L | T | V | H | G | L | W | P | G | L | P | K | S | V | A | A | R | G | V | D | E | R | R | W | M | R | F | G | C | A | T | R | P | I | P | N | L | P | E | A | R | A | S | R | M | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  | ? | ? | ? | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | S | S | P | E | T | G | L | S | L | E | T | A | A | K | L | S | E | V | M | P | G | A | G | G | R | S | C | L | E | R | Y | E | Y | A | K | H | G | A | C | F | G | F | D | P | D | A | Y | F | G | T | M | V | R | L | N | Q | E | I | K | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | S | E | A | G | K | F | L | A | D | N | Y | G | K | T | V | S | R | R | D | F | D | A | A | F | A | K | S | W | G | K | E | N | V | K | A | V | K | L | T | C | Q | G | N | P | A | Y | L | T | E | I | Q | I | S | I | K | A | D | A | I | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | .
Sequence |  | A | P | L | S | A | N | S | F | L | P | Q | P | H | P | G | N | C | G | K | T | F | V | I | D | K | A | G | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2pqxA_ |

### PDB 2pqx chain A

Region: 24 - 268
Aligned: 245
Modelled: 245
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease i;
PDBTitle: e. coli rnase 1 (in vivo folded)

Phyre2
2 |
| d1sgla_ |

### PDB 1sgl chain A

Region: 33 - 266
Aligned: 190
Modelled: 203
Confidence: 100.0%
Identity: 20%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
3 |
| d1iyba_ |

### PDB 1iyb chain A

Region: 29 - 265
Aligned: 198
Modelled: 228
Confidence: 100.0%
Identity: 23%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
4 |
| d1dixa_ |

### PDB 1dix chain A

Region: 28 - 265
Aligned: 196
Modelled: 205
Confidence: 100.0%
Identity: 19%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
5 |
| c1vd3A_ |

### PDB 1vd3 chain A

Region: 31 - 266
Aligned: 194
Modelled: 207
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:rnase ngr3;
PDBTitle: ribonuclease nt in complex with 2'-ump

Phyre2
6 |
| d1jy5a_ |

### PDB 1jy5 chain A

Region: 31 - 264
Aligned: 185
Modelled: 199
Confidence: 100.0%
Identity: 21%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
7 |
| d1iooa_ |

### PDB 1ioo chain A

Region: 33 - 263
Aligned: 180
Modelled: 187
Confidence: 100.0%
Identity: 24%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
8 |
| d1ucda_ |

### PDB 1ucd chain A

Region: 34 - 263
Aligned: 181
Modelled: 202
Confidence: 100.0%
Identity: 24%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
9 |
| d1iqqa_ |

### PDB 1iqq chain A

Region: 34 - 263
Aligned: 187
Modelled: 192
Confidence: 100.0%
Identity: 20%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
10 |
| c3d3zA_ |

### PDB 3d3z chain A

Region: 31 - 267
Aligned: 192
Modelled: 200
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:actibind;
PDBTitle: crystal structure of actibind a t2 rnase

Phyre2
11 |
| d1bola_ |

### PDB 1bol chain A

Region: 37 - 265
Aligned: 181
Modelled: 199
Confidence: 100.0%
Identity: 19%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
12 |
| d2ciwa1 |

### PDB 2ciw chain A domain 1

Region: 183 - 209
Aligned: 27
Modelled: 27
Confidence: 26.8%
Identity: 26%
Fold: EF Hand-like
Superfamily: Cloroperoxidase
Family: Cloroperoxidase

Phyre2
13 |
| d1dfxa1 |

### PDB 1dfx chain A domain 1

Region: 76 - 81
Aligned: 6
Modelled: 6
Confidence: 26.8%
Identity: 50%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Superoxide reductase-like
Family: Superoxide reductase-like

Phyre2
14 |
| c2amuA_ |

### PDB 2amu chain A

Region: 77 - 81
Aligned: 5
Modelled: 5
Confidence: 25.3%
Identity: 80%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative superoxide reductase;
PDBTitle: crystal structure of a putative superoxide reductase (tm0658) from2 thermotoga maritima at 2.00 a resolution

Phyre2
15 |
| d1dqia_ |

### PDB 1dqi chain A

Region: 77 - 81
Aligned: 5
Modelled: 5
Confidence: 24.9%
Identity: 80%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Superoxide reductase-like
Family: Superoxide reductase-like

Phyre2
16 |
| c1y07A_ |

### PDB 1y07 chain A

Region: 76 - 81
Aligned: 6
Modelled: 6
Confidence: 23.7%
Identity: 50%
PDB header:oxidoreductase
Chain: A: PDB Molecule:desulfoferrodoxin (rbo);
PDBTitle: crystal structure of the superoxide reductase from2 treponema pallidum

Phyre2
17 |
| d1vzia1 |

### PDB 1vzi chain A domain 1

Region: 77 - 81
Aligned: 5
Modelled: 5
Confidence: 23.7%
Identity: 60%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Superoxide reductase-like
Family: Superoxide reductase-like

Phyre2
18 |
| c1vzhB_ |

### PDB 1vzh chain B

Region: 77 - 81
Aligned: 5
Modelled: 5
Confidence: 20.2%
Identity: 60%
PDB header:oxidoreductase
Chain: B: PDB Molecule:desulfoferrodoxin;
PDBTitle: structure of superoxide reductase bound to ferrocyanide and2 active site expansion upon x-ray induced photoreduction

Phyre2
19 |
| c3oqgA_ |

### PDB 3oqg chain A

Region: 152 - 175
Aligned: 21
Modelled: 24
Confidence: 14.4%
Identity: 38%
PDB header:hydrolase/dna
Chain: A: PDB Molecule:hpy188i;
PDBTitle: restriction endonuclease hpy188i in complex with substrate dna

Phyre2
20 |
| c2cj0A_ |

### PDB 2cj0 chain A

Region: 183 - 209
Aligned: 27
Modelled: 27
Confidence: 14.1%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:chloroperoxidase;
PDBTitle: chloroperoxidase complexed with nitrate

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2pqxA_ |
|  | 100.0 | 100 | PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease i; PDBTitle: e. coli rnase 1 (in vivo folded)
2 | d1sgla_ |
|  | 100.0 | 20 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
3 | d1iyba_ |
|  | 100.0 | 23 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
4 | d1dixa_ |
|  | 100.0 | 19 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
5 | c1vd3A_ |
|  | 100.0 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:rnase ngr3; PDBTitle: ribonuclease nt in complex with 2'-ump
6 | d1jy5a_ |
|  | 100.0 | 21 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
7 | d1iooa_ |
|  | 100.0 | 24 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
8 | d1ucda_ |
|  | 100.0 | 24 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
9 | d1iqqa_ |
|  | 100.0 | 20 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
10 | c3d3zA_ |
|  | 100.0 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:actibind; PDBTitle: crystal structure of actibind a t2 rnase
11 | d1bola_ |
|  | 100.0 | 19 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
12 | d2ciwa1 |
|  | 26.8 | 26 | Fold:EF Hand-like Superfamily:Cloroperoxidase Family:Cloroperoxidase
13 | d1dfxa1 |
|  | 26.8 | 50 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Superoxide reductase-like Family:Superoxide reductase-like
14 | c2amuA_ |
|  | 25.3 | 80 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative superoxide reductase; PDBTitle: crystal structure of a putative superoxide reductase (tm0658) from2 thermotoga maritima at 2.00 a resolution
15 | d1dqia_ |
|  | 24.9 | 80 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Superoxide reductase-like Family:Superoxide reductase-like
16 | c1y07A_ |
|  | 23.7 | 50 | PDB header:oxidoreductase Chain: A: PDB Molecule:desulfoferrodoxin (rbo); PDBTitle: crystal structure of the superoxide reductase from2 treponema pallidum
17 | d1vzia1 |
|  | 23.7 | 60 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Superoxide reductase-like Family:Superoxide reductase-like
18 | c1vzhB_ |
|  | 20.2 | 60 | PDB header:oxidoreductase Chain: B: PDB Molecule:desulfoferrodoxin; PDBTitle: structure of superoxide reductase bound to ferrocyanide and2 active site expansion upon x-ray induced photoreduction
19 | c3oqgA_ |
|  | 14.4 | 38 | PDB header:hydrolase/dna Chain: A: PDB Molecule:hpy188i; PDBTitle: restriction endonuclease hpy188i in complex with substrate dna
20 | c2cj0A_ |
|  | 14.1 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:chloroperoxidase; PDBTitle: chloroperoxidase complexed with nitrate
21 | c2zkrs_ |
| not modelled | 12.8 | 14 | PDB header:ribosomal protein/rna Chain: S: PDB Molecule:rna expansion segment es39 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
22 | c1s1iT_ |
| not modelled | 10.3 | 11 | PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l25; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
23 | c2cfaB_ |
| not modelled | 9.3 | 7 | PDB header:transferase Chain: B: PDB Molecule:thymidylate synthase; PDBTitle: structure of viral flavin-dependant thymidylate synthase2 thyx
24 | c3bboV_ |
| not modelled | 9.2 | 11 | PDB header:ribosome Chain: V: PDB Molecule:ribosomal protein l23; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome
25 | d2dl2a1 |
| not modelled | 8.8 | 10 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
26 | c4a10A_ |
| not modelled | 8.5 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:octenoyl-coa reductase/carboxylase; PDBTitle: apo-structure of 2-octenoyl-coa carboxylase reductase cinf from2 streptomyces sp.
27 | d1m4ka1 |
| not modelled | 8.3 | 10 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
28 | c2j42A_ |
| not modelled | 8.2 | 23 | PDB header:toxin Chain: A: PDB Molecule:c2 toxin component-ii; PDBTitle: low quality crystal structure of the transport component c2-2 ii of the c2-toxin from clostridium botulinum
29 | c4a17R_ |
| not modelled | 7.8 | 15 | PDB header:ribosome Chain: R: PDB Molecule:rpl23a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
30 | c3q13A_ |
| not modelled | 7.7 | 22 | PDB header:cell adhesion Chain: A: PDB Molecule:spondin-1; PDBTitle: the structure of the ca2+-binding, glycosylated f-spondin domain of f-2 spondin, a c2-domain variant from extracellular matrix
31 | d1nkra1 |
| not modelled | 7.2 | 10 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
32 | d1h7na_ |
| not modelled | 6.7 | 20 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
33 | c3f9xA_ |
| not modelled | 6.7 | 25 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd8; PDBTitle: structural insights into lysine multiple methylation by set2 domain methyltransferases, set8-y334f / h4-lys20me2 /3 adohcy
34 | d1vqos1 |
| not modelled | 6.2 | 11 | Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p
35 | c1xa0B_ |
| not modelled | 5.8 | 7 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative nadph dependent oxidoreductases; PDBTitle: crystal structure of mcsg target apc35536 from bacillus2 stearothermophilus
36 | d1f66c_ |
| not modelled | 5.6 | 16 | Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones
37 | c1f66C_ |
| not modelled | 5.6 | 16 | PDB header:structural protein/dna Chain: C: PDB Molecule:histone h2a.z; PDBTitle: 2.6 a crystal structure of a nucleosome core particle2 containing the variant histone h2a.z
38 | d2qamt1 |
| not modelled | 5.5 | 9 | Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p
39 | d1tp6a_ |
| not modelled | 5.5 | 9 | Fold:Cystatin-like Superfamily:NTF2-like Family:PA1314-like
40 | d1xtpa_ |
| not modelled | 5.2 | 9 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:AD-003 protein-like
41 | d1m4ua_ |
| not modelled | 5.2 | 56 | Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Noggin
42 | c2ww9K_ |
| not modelled | 5.1 | 13 | PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l25; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0