5 c2vsqA_ Probab=100.00  E-value=0  Score=507.18  Aligned_columns=488  Identities=24%

Q ss_pred             HCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             38899888799999999986599779992799078398999999999999998589998789998488999999999999
Q batch____        17 QQGLWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACL   96 (548)
Q Consensus        17 ~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~Gd~V~i~~~ns~~~~~~~lA~~   96 (548)
                      .....++.+++++|+++|+++||++|+++++ +++||+||.++++++|+.|++.|+++||+|++++++++++++++|||+
T Consensus       457 ~~~~~~~~~~~~~~~~~a~~~P~~~Al~~~~-~~lTy~~L~~~~~~la~~L~~~g~~~~~~V~i~~~~s~~~iv~~la~l  535 (1274)
T c2vsqA_         457 PAQAHETKPLTYWFKEAVNANPDAPALTYSG-QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVL  535 (1274)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHCTTSEEEESSS-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEEEECC-CEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             3345722120248999999789960899669-389541132333345889997688998889998379989999999999


Q ss_pred             HHCCEEEECCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHCCC
Q ss_conf             84849997489889999999998669979997214421210001233322085310331156766654435656630267
Q batch____        97 KIGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADN  176 (548)
Q Consensus        97 ~~G~~~vpi~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (548)
                      ++|++++|+++.++.+++.++++++++++++++.......                    ....................
T Consensus       536 ~aG~~~vpld~~~p~~rl~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  595 (1274)
T c2vsqA_         536 KAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQA--------------------AELPYTGTTLFIDDQTRFEE  595 (1274)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTS--------------------TTCCCCSEEEESSCGGGGGS
T ss_pred             HHCCEEEECCCCCCHHHHHHHHHHCCCCEEEECHHHHHHH--------------------HCCCCCCCCCCCCCCCCCCC
T ss_conf             8378535036116489999999966997999877786543--------------------01543461114554333455


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCE
Q ss_conf             75566556777861898402356766115753110256787742001226721122223661001331000010233211
Q batch____       177 TSLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGA  256 (548)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (548)
                      ....+.....+++++++.+|||+||.||++..+|+++.+.... ...+........+...++.+..+....+.....++.
T Consensus       596 ~~~~~~~~~~~~~~a~ii~TSGsTG~PKgV~i~h~~l~~~~~~-~~~~~~~~~~~~l~~~~~~fd~~~~~i~~~l~~G~~  674 (1274)
T c2vsqA_         596 QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKH-VDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAAR  674 (1274)
T ss_dssp             CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHSS-CCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCE
T ss_pred             CCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECHHHHHHHHHH-HHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCE
T ss_conf             5657665689987189997248898621799748999999999-873499988589960744678899999999984888


Q ss_pred             EEE--CCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC--CCEEEE
Q ss_conf             341--1466797899886631374066400488998763122123446430122103543211013567645--974781
Q batch____       257 RSV--LLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLS  332 (548)
Q Consensus       257 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  332 (548)
                      ...  .....++..+...+...+++.....+.............   .+.++.+..+|.+.+..+.+++...  +..++|
T Consensus       675 ~v~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~---~~~lr~v~~gGe~~~~~~~~~~~~~~~~~~l~n  751 (1274)
T c2vsqA_         675 LIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW---MKGLRCILFGGERASVPHVRKALRIMGPGKLIN  751 (1274)
T ss_dssp             EEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH---HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEE
T ss_pred             EEECCHHCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCHHH---CCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             99818010389999999998828975003699999997132242---776329998776489999999998619977997


Q ss_pred             EECCCHHHCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             210520101000254774333--554334112430110126642053589730486307843246378723447763157
Q batch____       333 VYGSTESSPHAVVNLDDPLSR--FMHTDGYAAAGVEIKVVDDARKTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEE  410 (548)
Q Consensus       333 ~yG~TE~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~g~~g~i~~~~~~~~~gy~~~~~~t~~~~~~~  410 (548)
                      .||+||++..++.........  ...++|.++++....+.+.+++.++.|..||+++.|+.++.||+|+++.|+..|..+
T Consensus       752 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~i~d~~~~~~p~G~~GEL~i~G~~va~GY~~~~~~T~~~F~~~  831 (1274)
T c2vsqA_         752 CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIEN  831 (1274)
T ss_dssp             EECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEEC
T ss_pred             CCCCCCHHHEEEEEECCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             45765023113731257664346654211007983289876788788889723799706861054168977738652158


Q ss_pred             ------CCCCCCCEEEECCCCEEEEEEECCCEEEECCEEECHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf             ------53446631211377379993103784898899935899999998198802799998676888857999999778
Q batch____       411 ------GWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYVVLKA  484 (548)
Q Consensus       411 ------~~~~tgd~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~g~~~~~~g~~~~a~v~~~~  484 (548)
                            .||+|||++++++||.|+|+||.|++||++|+||+|.|||+++.+||+|.+|+|++.+++.+++.++|||+...
T Consensus       832 p~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~riel~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~v~~~~  911 (1274)
T c2vsqA_         832 PFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT  911 (1274)
T ss_dssp             TTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS
T ss_pred             CCCCCCEEEECCCEEEECCCCEEEEECCCCCEEEECCEECCHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCC
T ss_conf             78689805872817898799759998313670888889915899988760696500799998665899707999994487


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCHHCCCEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             8888898999999997239811188589982638898985204788279
Q batch____       485 PHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLRK  533 (548)
Q Consensus       485 ~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~  533 (548)
                      .    ...+.++.+++++||.||+|..++.+++||+|++|||||++|.+
T Consensus       912 ~----~~~~~~~~~l~~~lp~~m~P~~~~~~~~lP~t~~GKvdr~~l~~  956 (1274)
T c2vsqA_         912 Q----LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPK  956 (1274)
T ss_dssp             S----SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCC
T ss_pred             C----CCCHHHHHHHHHHCCCCCCCCCEEEHHHCCCCCCCCCCHHHHHH
T ss_conf             7----65001234564301200367502442117678986421222221