16/01/2012 22:09:29 : INFO  : Run start: Mon Jan 16 22:09:27 GMT 2012
16/01/2012 22:09:38 : INFO  : Initialised job
16/01/2012 22:09:41 : INFO  : Renaming log file 'phyre2_20120116_220926.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/phyre_20120116_220926.log'
16/01/2012 22:09:43 : INFO  : Initialised job:
Sequence
>batch____
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGR
VLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEP
LLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINI
PMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVL
EHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKV
VNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA

16/01/2012 22:09:47 : INFO  : Checked sequence
16/01/2012 22:09:52 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 22:09:54 : INFO  : PSI-BLAST 3 iterations
16/01/2012 22:12:53 : INFO  : PSI-BLAST 5 iterations
16/01/2012 22:17:21 : INFO  : Finished PSI-BLAST
16/01/2012 22:17:25 : INFO  : Running Buildali to generate a3m file
17/01/2012 00:36:55 : INFO  : Converting to HMM
17/01/2012 00:37:28 : INFO  : Calibrating HMM
17/01/2012 00:37:47 : INFO  : Searching HMM database
17/01/2012 00:45:23 : INFO  : Finished buildali
17/01/2012 00:45:26 : INFO  : Predicting secondary structure
17/01/2012 00:45:37 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 00:45:39 : INFO  : Predicting Disordered regions
17/01/2012 00:45:45 : INFO  : Predicted Disorder (Disopred)
17/01/2012 00:45:48 : INFO  : Running memsat_svm check
17/01/2012 00:48:28 : INFO  : Globular protein
17/01/2012 00:48:29 : INFO  : Predicted Transmembrane (memsat_svm) ID 'cb9ffff8ce1937c3'
17/01/2012 00:48:31 : INFO  : Initialising fold library search
17/01/2012 00:48:36 : INFO  : Initialised search input
17/01/2012 00:48:39 : INFO  : Building Ensemble models
17/01/2012 00:48:44 : INFO  : Building hh.c3d31B_.model.1.pdb
17/01/2012 00:49:06 : INFO  : Building hh.c2yyzA_.model.2.pdb
17/01/2012 00:49:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/hh.c2yyzA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/c2yyzA_.2.pdb
17/01/2012 00:49:30 : INFO  : Building hh.c3fvqB_.model.3.pdb
17/01/2012 00:49:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/hh.c3fvqB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/c3fvqB_.3.pdb
17/01/2012 00:49:53 : INFO  : Building hh.c2it1B_.model.4.pdb
17/01/2012 00:50:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/hh.c2it1B_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/c2it1B_.4.pdb
17/01/2012 00:50:19 : INFO  : Building hh.c1vciA_.model.5.pdb
17/01/2012 00:50:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/hh.c1vciA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/c1vciA_.5.pdb
17/01/2012 00:50:42 : INFO  : Building hh.c1oxtB_.model.6.pdb
17/01/2012 00:51:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/hh.c1oxtB_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb9ffff8ce1937c3/c1oxtB_.6.pdb
17/01/2012 00:51:05 : INFO  : Building c3d31B_.1.pdb
17/01/2012 00:51:26 : INFO  : Building c2yyzA_.2.pdb
17/01/2012 00:51:46 : INFO  : Building c3fvqB_.3.pdb
17/01/2012 00:52:06 : INFO  : Building c2it1B_.4.pdb
17/01/2012 00:52:26 : INFO  : Building c1vciA_.5.pdb
17/01/2012 00:52:46 : INFO  : Building c1oxtB_.6.pdb
17/01/2012 00:53:06 : INFO  : Building c1q1bD_.7.pdb
17/01/2012 00:53:25 : INFO  : Building c1z47B_.8.pdb
17/01/2012 00:53:45 : INFO  : Building c2d62A_.9.pdb
17/01/2012 00:54:04 : INFO  : Building c3gd7C_.10.pdb
17/01/2012 00:54:27 : INFO  : Building d1g2912.11.pdb
17/01/2012 00:54:45 : INFO  : Building c2olkD_.12.pdb
17/01/2012 00:55:05 : INFO  : Building d3dhwc1.13.pdb
17/01/2012 00:55:25 : INFO  : Building d1oxxk2.14.pdb
17/01/2012 00:55:45 : INFO  : Building c3dhwC_.15.pdb
17/01/2012 00:56:04 : INFO  : Building d3d31a2.16.pdb
17/01/2012 00:56:22 : INFO  : Building d1v43a3.17.pdb
17/01/2012 00:56:40 : INFO  : Building d1b0ua_.18.pdb
17/01/2012 00:56:59 : INFO  : Building c3gfoA_.19.pdb
17/01/2012 00:57:17 : INFO  : Building d1vpla_.20.pdb
17/01/2012 00:59:44 : INFO  : Finished HH model building
17/01/2012 00:59:46 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 01:01:00 : INFO  : html domain output complete ID 'cb9ffff8ce1937c3'
17/01/2012 02:33:58 : INFO  : Run end  : Tue Jan 17 02:33:56 GMT 2012
