BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (171 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P41069 Protein traV n=41 Tax=root RepID=TRAV_ECOLI 350 1e-95 UniRef50_A6TIT8 F pilus assembly protein n=5 Tax=Enterobacteriac... 183 3e-45 UniRef50_A4SUD2 TraV protein n=1 Tax=Aeromonas salmonicida subsp... 119 6e-26 UniRef50_B6ICF5 TraV protein n=1 Tax=Escherichia coli SE11 RepID... 97 3e-19 UniRef50_Q8KNL2 TraV n=4 Tax=Enterobacteriaceae RepID=Q8KNL2_SALTI 87 3e-16 UniRef50_B2VB10 TraV protein n=1 Tax=Erwinia tasmaniensis RepID=... 82 1e-14 UniRef50_A4WGS6 Membrane lipoprotein lipid attachment site n=3 T... 81 2e-14 UniRef50_D2TZZ9 Conjugal transfer protein TraV n=1 Tax=Arsenopho... 52 5e-06 UniRef50_Q5ZTS3 Conjugative transfer: assembly n=1 Tax=Legionell... 51 2e-05 UniRef50_A4JTP1 Membrane lipoprotein lipid attachment site n=1 T... 47 2e-04 UniRef50_Q0F362 Putative uncharacterized protein n=1 Tax=Maripro... 42 0.008 UniRef50_A2SNK5 Sex pilus assembly protein n=1 Tax=Methylibium p... 40 0.023 UniRef50_C5SIK6 Putative uncharacterized protein n=1 Tax=Asticca... 40 0.025 >UniRef50_P41069 Protein traV n=41 Tax=root RepID=TRAV_ECOLI Length = 171 Score = 350 bits (898), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 171/171 (100%), Positives = 171/171 (100%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA Sbjct: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV Sbjct: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN 171 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN Sbjct: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN 171 >UniRef50_A6TIT8 F pilus assembly protein n=5 Tax=Enterobacteriaceae RepID=A6TIT8_KLEP7 Length = 194 Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 102/194 (52%), Positives = 119/194 (61%), Gaps = 23/194 (11%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MK+ IPL G LLL GCAGT TEF+CNATTSDTCMTMEQANEKAK E S+AKP AA Sbjct: 1 MKELMLLIPLGGALLLTGCAGTETEFQCNATTSDTCMTMEQANEKAKLKEERSDAKPAAA 60 Query: 61 SLPRLAEGNFRTMPV------------QTVTATTPSGSRPAV----TAHPEQKLLAPRPL 104 LP+LAEGNFRT V Q A +R TA E Sbjct: 61 GLPQLAEGNFRTTSVNSYPLPPQSNLTQARVAAEKDRARAVYLNNPTAKNEATYFETEKR 120 Query: 105 FTAAREVKTVVPVSSVT---PVTP----PRPLRTGEQTAALWIAPYIDNQDVYHQPSSVF 157 + VK +PV + T P TP PRPLR GE+T +LWIAPY+D+ DVYHQP++V Sbjct: 121 LQSLPVVKMSLPVVASTFTSPSTPPGNYPRPLRKGEETTSLWIAPYVDSDDVYHQPATVL 180 Query: 158 FVIKPSAWGKPRIN 171 FV+KPSAWG+PR+N Sbjct: 181 FVVKPSAWGQPRLN 194 >UniRef50_A4SUD2 TraV protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUD2_AERS4 Length = 183 Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 103/180 (57%), Gaps = 22/180 (12%) Query: 5 SFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKA-KKLERSSEAKPVAASLP 63 S F LLG GCAG+++EFECNATTSD CMTMEQANE A KK E + K A LP Sbjct: 8 SVFCALLG-----GCAGSASEFECNATTSDRCMTMEQANEMARKKTEGDTRGKQAAGGLP 62 Query: 64 RLAEGNFRTM-PVQT-VTATTPSGSRPAVTAHPEQKLL-APRPLFTAA---REVKTVVPV 117 L E ++ P++T V + P+ S A T P ++ PRPL T A ++T +PV Sbjct: 63 ALVELPAPSVSPLETPVMTSVPAQS--ATTMPPSARISPTPRPLTTDAPSSSPLRTTLPV 120 Query: 118 SSVTPVTPPR--------PLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPR 169 S PPR PLR + TA++WIAP+ID DV+HQP V FV+ P W P+ Sbjct: 121 LSNEVCAPPRCDNLGEATPLRLIDATASVWIAPWIDASDVFHQPGRVSFVVTPGTWQLPQ 180 >UniRef50_B6ICF5 TraV protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF5_ECOSE Length = 177 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 20/174 (11%) Query: 5 SFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAAS--L 62 + + L G L+L GCAG +EF+CN T S+ CMTM++AN KA+ + + + K L Sbjct: 4 ALLMVLAGGLMLTGCAGMKSEFDCNDTASNGCMTMDEANNKARTMTENQKGKAAEGRRIL 63 Query: 63 PRLAEGNFRTMPVQTVTATTPSGS----------RPAVTA-HPEQKLLAPRPLFTAAREV 111 P LA +PV +AT+ GS P TA +P + +A Sbjct: 64 PPLA-----AVPVIKASATSAGGSPVTKNAAAAVTPGATARNPFRGSVAGTGGVAVTSGG 118 Query: 112 KTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 + PV S +T RP+R TA +WIA ++D+Q V+HQPS V F ++P+ W Sbjct: 119 AQISPVWSDIGMT--RPVRLPSTTARMWIAAWVDDQAVWHQPSVVSFEVEPARW 170 >UniRef50_Q8KNL2 TraV n=4 Tax=Enterobacteriaceae RepID=Q8KNL2_SALTI Length = 204 Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 87/187 (46%), Gaps = 34/187 (18%) Query: 19 CAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAE---GNFRTMPV 75 CAG + F+C+ATTSDTCMTM +AN+ A+ KP A LP L + +P Sbjct: 18 CAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPS 77 Query: 76 QTVTATT-PSGSRPAVTAHP-------------EQKLLAPRPL----FTAAREVKTVVPV 117 + +A T PSG+R T P L PRP+ T PV Sbjct: 78 ASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPV 137 Query: 118 SSVTPVTPP------------RPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 SV TP P R+ +Q A +WIAP++D+ + +HQP V FV+ P+ W Sbjct: 138 VSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADW 197 Query: 166 GKP-RIN 171 P R+N Sbjct: 198 VLPARVN 204 >UniRef50_B2VB10 TraV protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB10_ERWT9 Length = 177 Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 39/187 (20%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MK+ F + T LL GCAG + +F+CN T +D C+TMEQA A + Sbjct: 1 MKKIIFLLST--TALLSGCAGMNDDFDCNKTATDQCLTMEQAQGLASQ----------GK 48 Query: 61 SLPRL--AEGNFRTMPVQTVTATTP-SGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPV 117 SL L ++G V AT P S ++P + ++ P+ + + ++ P Sbjct: 49 SLDDLDASKGGSEKKVVSETVATKPLSNNKPVINSY-------INPVESGSTVKSSLFPQ 101 Query: 118 SSVTPVTPPRPLRTGEQ-----------------TAALWIAPYIDNQDVYHQPSSVFFVI 160 +V PV P+R E+ T +WI+P++D D +HQPS V FV Sbjct: 102 QNVHPVISTTPMRVIEKVNPNSAGSVNSVRYQDVTQRIWISPWVDKDDSFHQPSIVEFVT 161 Query: 161 KPSAWGK 167 + S+W K Sbjct: 162 EHSSWKK 168 >UniRef50_A4WGS6 Membrane lipoprotein lipid attachment site n=3 Tax=Enterobacteriaceae RepID=A4WGS6_ENT38 Length = 185 Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 22/174 (12%) Query: 10 LLGTLLLY----GCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRL 65 LLG LL GCAG +++F+CN T +D C+T +AN+ A + + A+ Sbjct: 4 LLGAALLCSALTGCAGLNSDFDCNKTATDQCLTTGEANKLAAQGKNLDSLAADKAAKKPA 63 Query: 66 AEGNFRTMPVQTVTATTPSGSRP---AVTAHPEQKLLAPRPLFTA--AREVKTVVPVSSV 120 E T+P TA + RP A T K +APRPL TA V P+++ Sbjct: 64 GE----TLPALRNTAPVVNPGRPVSVAATGTAIAKPIAPRPLATAPSGSTGSLVTPLTTA 119 Query: 121 TPVTPPRPLRTG---------EQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 VTP P+ T + T LWIAP++D D +HQP+ V FV S W Sbjct: 120 GHVTPVTPVNTAGRVPVQRIPDATQRLWIAPWVDTDDNFHQPAVVEFVKNKSHW 173 >UniRef50_D2TZZ9 Conjugal transfer protein TraV n=1 Tax=Arsenophonus nasoniae RepID=D2TZZ9_9ENTR Length = 176 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 68/168 (40%), Gaps = 18/168 (10%) Query: 12 GTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAK---------KLERSSEAKPVAASL 62 G +LL GCAG ++EFE D+ M +A+E K E AK S Sbjct: 11 GIVLLSGCAGMNSEFEFGKPAKDSGYWMSEADEMTNTASDLVAQHKGEVVKSAKGFNLSA 70 Query: 63 PRLAEGNFRTMPVQTVTATTPSGSRPAV--TAHPEQKLLAPRPLFTAAREVKTVVPVS-S 119 RL + + PV +T S + P P + L FTA + T P S Sbjct: 71 YRLIQLSNLQTPVTLLTERAISANNPNSMKVKSPASRWLTNN--FTA--QSPTACPASPC 126 Query: 120 VTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 + VT P R E+ WIAPY+ +V H V+FV S W Sbjct: 127 LGEVTAPS--RQAERITRAWIAPYVSPDEVVHTGEVVYFVTTSSTWAN 172 >UniRef50_Q5ZTS3 Conjugative transfer: assembly n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTS3_LEGPH Length = 116 Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 57/156 (36%) Query: 10 LLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGN 69 LL ++L GCA + +F+C A TC M+Q + + G Sbjct: 9 LLPCVVLTGCAKLNEDFDCPAPNGGTCKRMDQVYD--------------------MVNGK 48 Query: 70 FRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPL 129 +++ A TPS + PL R P +P+ Sbjct: 49 GKSL------AVTPSRN----------------PLVMDGR---------------PGQPV 71 Query: 130 RTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 R GE LWIAPY D YHQ + V+ V+K W Sbjct: 72 RYGEGVMPLWIAPYEDTDGNYHQANRVYSVVKEGQW 107 >UniRef50_A4JTP1 Membrane lipoprotein lipid attachment site n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTP1_BURVG Length = 222 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 95 EQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPS 154 + ++ P +AA + + PVS+ RP+RT Q +WIAP+ID++D H PS Sbjct: 79 QGNVVRPELAASAASSLPGLTPVSATASA---RPVRTPAQVMRIWIAPWIDSKDDLHYPS 135 Query: 155 SVFFVIKPSAW 165 +F ++P W Sbjct: 136 YLFTEVQPRRW 146 >UniRef50_Q0F362 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F362_9PROT Length = 154 Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 25/43 (58%) Query: 123 VTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 + P P+R+GE+ +W+AP++D YH + V+ V+ W Sbjct: 71 IRPGDPIRSGERVLRVWMAPWVDVDGDYHDQTYVYLVLDHGRW 113 >UniRef50_A2SNK5 Sex pilus assembly protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNK5_METPP Length = 230 Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 22/39 (56%) Query: 127 RPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 RP+R Q +WIAP+ID D H PS +F ++ W Sbjct: 130 RPVREPAQVMRIWIAPWIDKNDDLHYPSYLFTEVQARRW 168 >UniRef50_C5SIK6 Putative uncharacterized protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIK6_9CAUL Length = 148 Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 12/101 (11%) Query: 65 LAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVT 124 +AEG+ T T+ T RP + L+ P+ A+ + P + T Sbjct: 28 IAEGDHCT----TIADTDSRKDRP--------QRLSGDPVIFDAKPARWWQPNAPGTATR 75 Query: 125 PPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P R G+Q + +APY+D Q YH S +F V++ + W Sbjct: 76 DFDPRRDGDQVMRVIVAPYVDAQGDYHARSEIFAVVRRAQW 116 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P41069 Protein traV n=41 Tax=root RepID=TRAV_ECOLI 222 5e-57 UniRef50_A6TIT8 F pilus assembly protein n=5 Tax=Enterobacteriac... 182 6e-45 UniRef50_B2VB10 TraV protein n=1 Tax=Erwinia tasmaniensis RepID=... 160 1e-38 UniRef50_B6ICF5 TraV protein n=1 Tax=Escherichia coli SE11 RepID... 155 7e-37 UniRef50_A4SUD2 TraV protein n=1 Tax=Aeromonas salmonicida subsp... 153 2e-36 UniRef50_A4WGS6 Membrane lipoprotein lipid attachment site n=3 T... 145 5e-34 UniRef50_D2TZZ9 Conjugal transfer protein TraV n=1 Tax=Arsenopho... 143 2e-33 UniRef50_Q8KNL2 TraV n=4 Tax=Enterobacteriaceae RepID=Q8KNL2_SALTI 122 4e-27 UniRef50_Q5ZTS3 Conjugative transfer: assembly n=1 Tax=Legionell... 117 2e-25 UniRef50_A4JTP1 Membrane lipoprotein lipid attachment site n=1 T... 79 8e-14 Sequences not found previously or not previously below threshold: UniRef50_A2SNK5 Sex pilus assembly protein n=1 Tax=Methylibium p... 67 2e-10 UniRef50_Q0F362 Putative uncharacterized protein n=1 Tax=Maripro... 63 4e-09 UniRef50_A1WDF5 Membrane lipoprotein lipid attachment site n=1 T... 62 9e-09 UniRef50_C3NU44 Conjugative transfer protein TraV n=17 Tax=Gamma... 61 1e-08 UniRef50_C4NUX0 TraV n=11 Tax=Gammaproteobacteria RepID=C4NUX0_E... 60 2e-08 UniRef50_Q3IUW5 Putative uncharacterized protein traV n=1 Tax=Rh... 60 4e-08 UniRef50_D2U0R1 Conjugative transfer pilus assembly protein TraV... 59 7e-08 UniRef50_Q8L276 Pilus biogenesis protein n=2 Tax=Enterobacteriac... 58 8e-08 UniRef50_A0B4N5 Putative uncharacterized protein n=1 Tax=Burkhol... 57 2e-07 UniRef50_B3EB61 Putative uncharacterized protein n=2 Tax=Desulfu... 56 5e-07 UniRef50_C5ANL3 Putative uncharacterized protein n=1 Tax=Burkhol... 54 2e-06 UniRef50_UPI00016ACDCC membrane lipoprotein lipid attachment sit... 53 5e-06 UniRef50_Q5NX54 Pilus assembly protein n=1 Tax=Aromatoleum aroma... 52 8e-06 UniRef50_Q5NYG1 Similar to plasmid-like pilus assembly protein t... 51 2e-05 UniRef50_B7J830 Conjugal transfer protein TraV, putative n=1 Tax... 50 4e-05 UniRef50_B4RLR9 TraV n=9 Tax=Neisseria gonorrhoeae RepID=B4RLR9_... 48 1e-04 UniRef50_B4EQI0 Putative uncharacterized protein n=1 Tax=Burkhol... 47 3e-04 UniRef50_C5SIK6 Putative uncharacterized protein n=1 Tax=Asticca... 47 3e-04 UniRef50_C0QUW7 Type IV conjugative transfer system protein TraV... 47 3e-04 UniRef50_B7XGQ8 Putative pilus assembly protein n=2 Tax=Pseudomo... 45 0.001 UniRef50_B2I3Z1 Membrane lipoprotein lipid attachment site n=1 T... 42 0.008 UniRef50_C7YTX6 Putative uncharacterized protein (Fragment) n=1 ... 41 0.018 UniRef50_A9AU13 Putative uncharacterized protein n=1 Tax=Burkhol... 41 0.021 UniRef50_A3VN22 Putative uncharacterized protein n=1 Tax=Parvula... 40 0.048 UniRef50_B8P447 Predicted protein (Fragment) n=1 Tax=Postia plac... 39 0.069 UniRef50_A4V9A7 Plasmid transfer protein n=8 Tax=Enterobacteriac... 39 0.078 UniRef50_C7PR71 Mannosyl-glycoproteinendo-beta-N-acetylglucosami... 38 0.096 >UniRef50_P41069 Protein traV n=41 Tax=root RepID=TRAV_ECOLI Length = 171 Score = 222 bits (564), Expect = 5e-57, Method: Composition-based stats. Identities = 171/171 (100%), Positives = 171/171 (100%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA Sbjct: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV Sbjct: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN 171 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN Sbjct: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN 171 >UniRef50_A6TIT8 F pilus assembly protein n=5 Tax=Enterobacteriaceae RepID=A6TIT8_KLEP7 Length = 194 Score = 182 bits (460), Expect = 6e-45, Method: Composition-based stats. Identities = 100/194 (51%), Positives = 118/194 (60%), Gaps = 23/194 (11%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MK+ IPL G LLL GCAGT TEF+CNATTSDTCMTMEQANEKAK E S+AKP AA Sbjct: 1 MKELMLLIPLGGALLLTGCAGTETEFQCNATTSDTCMTMEQANEKAKLKEERSDAKPAAA 60 Query: 61 SLPRLAEGNFRTMPV------------QTVTATTPSGSRPAV----TAHPEQKLLAPRPL 104 LP+LAEGNFRT V Q A +R TA E Sbjct: 61 GLPQLAEGNFRTTSVNSYPLPPQSNLTQARVAAEKDRARAVYLNNPTAKNEATYFETEKR 120 Query: 105 FTAAREVKTVVPVSSVTPVTP-------PRPLRTGEQTAALWIAPYIDNQDVYHQPSSVF 157 + VK +PV + T +P PRPLR GE+T +LWIAPY+D+ DVYHQP++V Sbjct: 121 LQSLPVVKMSLPVVASTFTSPSTPPGNYPRPLRKGEETTSLWIAPYVDSDDVYHQPATVL 180 Query: 158 FVIKPSAWGKPRIN 171 FV+KPSAWG+PR+N Sbjct: 181 FVVKPSAWGQPRLN 194 >UniRef50_B2VB10 TraV protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB10_ERWT9 Length = 177 Score = 160 bits (404), Expect = 1e-38, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 35/185 (18%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MK+ F + T LL GCAG + +F+CN T +D C+TMEQA A + + + Sbjct: 1 MKKIIFLLST--TALLSGCAGMNDDFDCNKTATDQCLTMEQAQGLASQGKSLDDL----- 53 Query: 61 SLPRLAEGNFRTMPVQTVTATTP-SGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSS 119 ++G V AT P S ++P + ++ P+ + + ++ P + Sbjct: 54 ---DASKGGSEKKVVSETVATKPLSNNKPVINSY-------INPVESGSTVKSSLFPQQN 103 Query: 120 VTPVTPPRPLRTGEQ-----------------TAALWIAPYIDNQDVYHQPSSVFFVIKP 162 V PV P+R E+ T +WI+P++D D +HQPS V FV + Sbjct: 104 VHPVISTTPMRVIEKVNPNSAGSVNSVRYQDVTQRIWISPWVDKDDSFHQPSIVEFVTEH 163 Query: 163 SAWGK 167 S+W K Sbjct: 164 SSWKK 168 >UniRef50_B6ICF5 TraV protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF5_ECOSE Length = 177 Score = 155 bits (390), Expect = 7e-37, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 20/181 (11%) Query: 3 QTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAAS- 61 + + + L G L+L GCAG +EF+CN T S+ CMTM++AN KA+ + + + K Sbjct: 2 KPALLMVLAGGLMLTGCAGMKSEFDCNDTASNGCMTMDEANNKARTMTENQKGKAAEGRR 61 Query: 62 -LPRLAEGNFRTMPVQTVTATTPSGS----------RPAVTA-HPEQKLLAPRPLFTAAR 109 LP LA +PV +AT+ GS P TA +P + +A Sbjct: 62 ILPPLA-----AVPVIKASATSAGGSPVTKNAAAAVTPGATARNPFRGSVAGTGGVAVTS 116 Query: 110 EVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPR 169 + PV S +T RP+R TA +WIA ++D+Q V+HQPS V F ++P+ W Sbjct: 117 GGAQISPVWSDIGMT--RPVRLPSTTARMWIAAWVDDQAVWHQPSVVSFEVEPARWQHQE 174 Query: 170 I 170 + Sbjct: 175 V 175 >UniRef50_A4SUD2 TraV protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUD2_AERS4 Length = 183 Score = 153 bits (385), Expect = 2e-36, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 94/177 (53%), Gaps = 13/177 (7%) Query: 6 FFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKL-ERSSEAKPVAASLPR 64 F + LL GCAG+++EFECNATTSD CMTMEQANE A+K E + K A LP Sbjct: 4 FLCLSVFCALLGGCAGSASEFECNATTSDRCMTMEQANEMARKKTEGDTRGKQAAGGLPA 63 Query: 65 LAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLL-APRPLFTAAREVK---TVVPVSSV 120 L E ++ T ++ A T P ++ PRPL T A T +PV S Sbjct: 64 LVELPAPSVSPLETPVMTSVPAQSATTMPPSARISPTPRPLTTDAPSSSPLRTTLPVLSN 123 Query: 121 TPVTPPR--------PLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPR 169 PPR PLR + TA++WIAP+ID DV+HQP V FV+ P W P+ Sbjct: 124 EVCAPPRCDNLGEATPLRLIDATASVWIAPWIDASDVFHQPGRVSFVVTPGTWQLPQ 180 >UniRef50_A4WGS6 Membrane lipoprotein lipid attachment site n=3 Tax=Enterobacteriaceae RepID=A4WGS6_ENT38 Length = 185 Score = 145 bits (365), Expect = 5e-34, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 82/179 (45%), Gaps = 20/179 (11%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MK+ L L GCAG +++F+CN T +D C+T +AN+ A + + A Sbjct: 1 MKK--LLGAALLCSALTGCAGLNSDFDCNKTATDQCLTTGEANKLAAQGKNLDSLAADKA 58 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAV---TAHPEQKLLAPRPLFTA--AREVKTVV 115 + E T+P TA + RP T K +APRPL TA V Sbjct: 59 AKKPAGE----TLPALRNTAPVVNPGRPVSVAATGTAIAKPIAPRPLATAPSGSTGSLVT 114 Query: 116 PVSSVTPVTPPRPL---------RTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P+++ VTP P+ R + T LWIAP++D D +HQP+ V FV S W Sbjct: 115 PLTTAGHVTPVTPVNTAGRVPVQRIPDATQRLWIAPWVDTDDNFHQPAVVEFVKNKSHW 173 >UniRef50_D2TZZ9 Conjugal transfer protein TraV n=1 Tax=Arsenophonus nasoniae RepID=D2TZZ9_9ENTR Length = 176 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 66/170 (38%), Gaps = 18/170 (10%) Query: 10 LLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAK---------KLERSSEAKPVAA 60 + G +LL GCAG ++EFE D+ M +A+E K E AK Sbjct: 9 ISGIVLLSGCAGMNSEFEFGKPAKDSGYWMSEADEMTNTASDLVAQHKGEVVKSAKGFNL 68 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAV--TAHPEQKLLAPRPLFTAAREVKTVVPVS 118 S RL + + PV +T S + P P + L + T P S Sbjct: 69 SAYRLIQLSNLQTPVTLLTERAISANNPNSMKVKSPASRWLTNNF----TAQSPTACPAS 124 Query: 119 -SVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 + VT P R E+ WIAPY+ +V H V+FV S W Sbjct: 125 PCLGEVTAPS--RQAERITRAWIAPYVSPDEVVHTGEVVYFVTTSSTWAN 172 >UniRef50_Q8KNL2 TraV n=4 Tax=Enterobacteriaceae RepID=Q8KNL2_SALTI Length = 204 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 84/183 (45%), Gaps = 33/183 (18%) Query: 19 CAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGNFRT---MPV 75 CAG + F+C+ATTSDTCMTM +AN+ A+ KP A LP L + +P Sbjct: 18 CAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPS 77 Query: 76 QTVTATT-PSGSRPAVTAHPEQ-------------KLLAPRPL----FTAAREVKTVVPV 117 + +A T PSG+R T P L PRP+ T PV Sbjct: 78 ASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPV 137 Query: 118 SSVTPVTPP------------RPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 SV TP P R+ +Q A +WIAP++D+ + +HQP V FV+ P+ W Sbjct: 138 VSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADW 197 Query: 166 GKP 168 P Sbjct: 198 VLP 200 >UniRef50_Q5ZTS3 Conjugative transfer: assembly n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTS3_LEGPH Length = 116 Score = 117 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 59/165 (35%), Gaps = 57/165 (34%) Query: 3 QTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASL 62 + + LL ++L GCA + +F+C A TC M+Q + Sbjct: 2 KILTTLLLLPCVVLTGCAKLNEDFDCPAPNGGTCKRMDQVYDM----------------- 44 Query: 63 PRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTP 122 G +++ A TPS + PL R Sbjct: 45 ---VNGKGKSL------AVTPSRN----------------PLVMDGR------------- 66 Query: 123 VTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P +P+R GE LWIAPY D YHQ + V+ V+K W + Sbjct: 67 --PGQPVRYGEGVMPLWIAPYEDTDGNYHQANRVYSVVKEGQWMQ 109 >UniRef50_A4JTP1 Membrane lipoprotein lipid attachment site n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTP1_BURVG Length = 222 Score = 78.5 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 95 EQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPS 154 + ++ P +AA + + PVS+ RP+RT Q +WIAP+ID++D H PS Sbjct: 79 QGNVVRPELAASAASSLPGLTPVSATASA---RPVRTPAQVMRIWIAPWIDSKDDLHYPS 135 Query: 155 SVFFVIKPSAW 165 +F ++P W Sbjct: 136 YLFTEVQPRRW 146 >UniRef50_A2SNK5 Sex pilus assembly protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNK5_METPP Length = 230 Score = 67.3 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 51/166 (30%), Gaps = 11/166 (6%) Query: 6 FFIPLLGTLLLYGCAGT-----STEFEC-NATTSDTCMTMEQANEKAKKLERSSEAKPVA 59 + + TLL GC S E+ C TC T Sbjct: 8 LLLAMGVTLLASGCGTILNTAGSDEYGCTPGEAKVTCRTPTAIYRSTN-GSPPVAETDSP 66 Query: 60 ASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSS 119 + +L G + + A P P V P + + + Sbjct: 67 VAWSKLIRGTSGALVEEQPDAAAP---IPGVARSDASGGERRTPNERSVPGLNAQT-LGL 122 Query: 120 VTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 V RP+R Q +WIAP+ID D H PS +F ++ W Sbjct: 123 VGATIGGRPVREPAQVMRIWIAPWIDKNDDLHYPSYLFTEVQARRW 168 >UniRef50_Q0F362 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F362_9PROT Length = 154 Score = 62.7 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 107 AAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 + + T +P + P P+R+GE+ +W+AP++D YH + V+ V+ W Sbjct: 59 GSPDSPTGMPAI----IRPGDPIRSGERVLRVWMAPWVDVDGDYHDQTYVYLVLDHGRWY 114 Query: 167 KPR 169 R Sbjct: 115 IDR 117 >UniRef50_A1WDF5 Membrane lipoprotein lipid attachment site n=1 Tax=Acidovorax sp. JS42 RepID=A1WDF5_ACISJ Length = 216 Score = 61.6 bits (147), Expect = 9e-09, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 47/170 (27%), Gaps = 48/170 (28%) Query: 1 MKQTSFFIPLLGTLLLYGCAGT-----STEFECNATTSDTCMTMEQANEKAKKLERSSEA 55 MK + + + L GC+ +EF C A C +M Sbjct: 1 MKALALTFGIGAVVALSGCSSMSGFDAKSEFACKAPDGILCESMSGIY------------ 48 Query: 56 KPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVV 115 A + +P Q V A G P + + Sbjct: 49 ----------ANAQAKNLPGQRVNAR---GEAPVELSQAKAGSN---------------- 79 Query: 116 PVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P+ P+R+ + +W AP+ D H S V+ + W Sbjct: 80 --VMTKPIYSGTPIRSAPRLLRVWFAPWEDTDGDLHDQSYVYLPVDSGRW 127 >UniRef50_C3NU44 Conjugative transfer protein TraV n=17 Tax=Gammaproteobacteria RepID=C3NU44_VIBCJ Length = 216 Score = 61.2 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 41/167 (24%) Query: 3 QTSFFIPLLGTLLLYGCAGT---STEFECNA-TTSDTCMTMEQANEKAKKLERSSEAKPV 58 + + +G+ LL GC+ S+E+ C C++ + E V Sbjct: 44 KAGLLLLAVGSTLLSGCSSLGLGSSEYGCPGMPDGVRCLSAREVYELTSNGAAPKTIDAV 103 Query: 59 AASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVS 118 A + G+ + + L P ++ Sbjct: 104 ATRI----------------------GAPSGYSQSDLETGLLSHPALPETQQSA------ 135 Query: 119 SVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P+R + +WIAP+ D++ + S VF I+P W Sbjct: 136 ---------PIRIPSRVMRIWIAPWEDDRGDLNLSSYVFTEIEPRRW 173 >UniRef50_C4NUX0 TraV n=11 Tax=Gammaproteobacteria RepID=C4NUX0_ECOLX Length = 192 Score = 60.4 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 32/157 (20%) Query: 14 LLLYGCAGTS---TEFECNA-TTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGN 69 L+L GC+ + E+ C CM+ KP A+G Sbjct: 36 LILSGCSTFNIGKDEYSCPGMPNGVQCMSARDVYAATNDGNVPRPMKPEEVEAKAEADGE 95 Query: 70 FRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPL 129 + + + +APR P P+ Sbjct: 96 GSSNVSANSS---------SSGDPVIDNYVAPRL-------------------PDRPIPI 127 Query: 130 RTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 RT Q +W+AP+ D V+ I+P W Sbjct: 128 RTPAQVMRIWVAPWEDTNGDLIVTGYVYTEIEPRRWV 164 >UniRef50_Q3IUW5 Putative uncharacterized protein traV n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUW5_RHOS4 Length = 142 Score = 59.6 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 36/160 (22%) Query: 11 LGTLLLYGCAG-TSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGN 69 L L L GC G T +F C A C T+ +A+ Sbjct: 13 LAILALAGCGGNTQKDFLCPAQEGIACATISEAD-------------------------- 46 Query: 70 FRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPP--- 126 V + +A TP + T E +P + + TVV SS+ P Sbjct: 47 -----VGSGSAVTPVRETFSDTLGKEMSQ-SPLGVGSGKGGKLTVVSQSSMGDGGAPYRA 100 Query: 127 RPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 + R E+ LWIAP+ D + ++ S V FV++ + W Sbjct: 101 QQYRVPEEVGTLWIAPHRDADGLLYEASFVHFVVREARWA 140 >UniRef50_D2U0R1 Conjugative transfer pilus assembly protein TraV n=1 Tax=Arsenophonus nasoniae RepID=D2U0R1_9ENTR Length = 165 Score = 58.9 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 54/165 (32%), Gaps = 29/165 (17%) Query: 6 FFIPLLG--TLLLYGCAGT--STEFEC-NATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 F+PLLG L L C+ ++EF C S TCM++ ++ E E Sbjct: 1 MFMPLLGWVALSLTACSSLVGNSEFGCKGMPNSVTCMSVRDVHKLT-DGEDYQE------ 53 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 + + + VT Q L A E PV Sbjct: 54 ---------------KINLVSKKQQNGEVVTKDEIQSLTKGNKNKRIAIESGQYTPVPK- 97 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P P+P+R+ + I PY + ++ I P AW Sbjct: 98 -PAADPQPIRSESMVMRILIDPYENTDGDLVVAGYIYTEIVPRAW 141 >UniRef50_Q8L276 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae RepID=Q8L276_PROVU Length = 196 Score = 58.5 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 31/169 (18%) Query: 2 KQTSF-FIPLLGTLLLYGCA---GTSTEFEC-NATTSDTCMTMEQANEKAKKLERSSEAK 56 K+ + + + L GC+ G +E+ C + TCM+M + E Sbjct: 4 KRIMLALLGVASAVALTGCSSLVGGESEYGCKGMPDAVTCMSMGEVYELTDGSNYKERVS 63 Query: 57 PVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVP 116 V+ + + + + V+ VTA G+ P +A V Sbjct: 64 EVSQQ-----QLSGKQVNVKQVTA---GGNGAG-------------PSVSAGAAYVPVPV 102 Query: 117 VSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 S P+P+RT Q + + Y + P V+ I+P W Sbjct: 103 PVSN-----PQPIRTPSQVMRVLVDSYESADGDLNVPGYVYTEIEPRRW 146 >UniRef50_A0B4N5 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0B4N5_BURCH Length = 226 Score = 56.9 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 57/171 (33%), Gaps = 27/171 (15%) Query: 1 MKQTSFFIPLLGTLLLYGCA----GTSTEFECNATTSDTCMTME--QANEKAKKLERSSE 54 MK L L L GC+ S++F C A C +M AN A L Sbjct: 1 MKNKIMLATLSALLTLTGCSFSGYDASSQFACKAPEGVLCSSMSGIYANAMAHNLP-DQR 59 Query: 55 AKPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTV 114 A + +A G++ Q +A + A RP+ AA + Sbjct: 60 VHTGAGATTNIALGSYAGDFSQASSAPGAAVGGNA------------RPVVGAAGILPKA 107 Query: 115 VPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 + P+ T + +W AP+ D H V+ ++ P W Sbjct: 108 L--------DSGAPVHTASREMRIWFAPWQDADSDLHDQEYVYLIVDPGHW 150 >UniRef50_B3EB61 Putative uncharacterized protein n=2 Tax=Desulfuromonadales RepID=B3EB61_GEOLS Length = 164 Score = 55.8 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 16/161 (9%) Query: 8 IPLLGTLLLYGCAGTS---TEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPR 64 + +G L + GCA + + F C T++ C++++ A +++ S P Sbjct: 5 LITIGMLTMSGCALLNPYESSFSCPETSNGKCVSVQTAYKESTASPGKSSEAPAEHKEDD 64 Query: 65 LAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVT 124 N A + + ++ HP K T R + S Sbjct: 65 CNADNA--------AAGLCTEGKKDISLHPSAKENG-----TYNRYQSALFDKFSGLLKE 111 Query: 125 PPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P P+ +T + + PY + ++ V+F + W Sbjct: 112 PVTPVVAPPKTMRVLLLPYTGQDNEFYMLRYVYFFVDEPRW 152 >UniRef50_C5ANL3 Putative uncharacterized protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5ANL3_BURGB Length = 232 Score = 54.2 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 50/161 (31%), Gaps = 28/161 (17%) Query: 11 LGTLLLYGCAGT----STEFECNATTSDTCMTME--QANEKAKKLERSSEAKPVAASLPR 64 L L C+ T S+ F C A C +M AN A L A+ Sbjct: 17 AAVLALSACSFTGYDASSSFACKAPAGVLCNSMSGIYANAMAHNLPDQRVHAGSGAATNL 76 Query: 65 LAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVT 124 P + + + + A P + PR L + A Sbjct: 77 TLGSYADDSPADRASGSRKAAAGGARATSPG---ILPRALDSGA---------------- 117 Query: 125 PPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P+RT + +W AP+ D H V+ V+ P W Sbjct: 118 ---PVRTAPRELRVWFAPWQDADSDLHDQEYVYLVVDPGHW 155 >UniRef50_UPI00016ACDCC membrane lipoprotein lipid attachment site n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016ACDCC Length = 215 Score = 52.7 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 50/165 (30%), Gaps = 47/165 (28%) Query: 5 SFFIPLLGTLLLYGCA----GTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 +F + ++ C+ ++F C A C +M Sbjct: 5 TFLMASATVAVVSACSFSGLDAESKFACKAPDGVVCDSMT-------------------G 45 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 SL L GN R + A + S+ P Q + RPLF+ + Sbjct: 46 SLANLQAGNARGTRTSQLAAASAPTSK-----TPAQGAVLARPLFSGS------------ 88 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P+R+ WIAP+ D H S V+ W Sbjct: 89 -------PIRSAPHVVRAWIAPWEDADGDLHDQSYVYLTTDTGRW 126 >UniRef50_Q5NX54 Pilus assembly protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX54_AZOSE Length = 218 Score = 51.9 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 20/60 (33%) Query: 106 TAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 TA +P P+R Q + + P+ D D H V+ I+ W Sbjct: 92 TATSSSVGTMPPELAIHSDGVAPVRMPAQVMRIRVFPWTDKNDNLHSGGYVYTEIEQRKW 151 >UniRef50_Q5NYG1 Similar to plasmid-like pilus assembly protein traV n=5 Tax=Betaproteobacteria RepID=Q5NYG1_AZOSE Length = 195 Score = 50.8 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 11/132 (8%) Query: 34 DTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAH 93 CM M +K ++ E + A +P Q + + + Sbjct: 18 GACMNMSGLGGDSKYACKAPEGVACDSVSGTYANALHHNLPSQRARRSPAARQEESDERA 77 Query: 94 PEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQP 153 P+ A P TA +V P PLR+ + LWI P+ D + Sbjct: 78 PQATTRAASP-ATAGDAGTSVTP----------SPLRSQARVLRLWIKPWEDADGDLYDQ 126 Query: 154 SSVFFVIKPSAW 165 V+ + W Sbjct: 127 GYVYVQVDNGQW 138 >UniRef50_B7J830 Conjugal transfer protein TraV, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J830_ACIF2 Length = 165 Score = 49.6 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 14/155 (9%) Query: 13 TLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGNFRT 72 + L GCA T C C+ + + + P +L A+ R Sbjct: 11 IIALGGCA---TSHPCIHGKGGVCVGPRETWGITR---HRDQVNPDKRTLK--AQNEARK 62 Query: 73 MPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTG 132 + + +A + TA +Q L + P P+PL T Sbjct: 63 LLHTSPSARDQLPNIHPQTAPSQQTLDGGKAAQYTTGNQPLQAP------TGYPKPLLTQ 116 Query: 133 EQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 + +W+APY + H P V+ +I+P +W Sbjct: 117 PRVLRVWVAPYRGPEGNLHFPGMVYSIIQPQSWTL 151 >UniRef50_B4RLR9 TraV n=9 Tax=Neisseria gonorrhoeae RepID=B4RLR9_NEIG2 Length = 201 Score = 48.1 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 124 TPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 + P+R+ + A +W+APY+D + S + V+ W Sbjct: 96 SSGTPVRSQSEIARIWVAPYLDTDGDLNDQSFTYVVLNQGDW 137 >UniRef50_B4EQI0 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EQI0_BURCJ Length = 175 Score = 46.9 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 104 LFTAAREVKTVVPVSSVT--PVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIK 161 + A KT P S+V P+ P+R+ + LW AP+ D + S + VI Sbjct: 21 GASLATTTKTPAPGSAVLSRPLFSGSPIRSAPRELRLWFAPWEDADGDLYDQSYAYLVID 80 Query: 162 PSAW 165 W Sbjct: 81 NGQW 84 >UniRef50_C5SIK6 Putative uncharacterized protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIK6_9CAUL Length = 148 Score = 46.5 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%) Query: 99 LAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFF 158 L+ P+ A+ + P + T P R G+Q + +APY+D Q YH S +F Sbjct: 50 LSGDPVIFDAKPARWWQPNAPGTATRDFDPRRDGDQVMRVIVAPYVDAQGDYHARSEIFA 109 Query: 159 VIKPSAW 165 V++ + W Sbjct: 110 VVRRAQW 116 >UniRef50_C0QUW7 Type IV conjugative transfer system protein TraV n=1 Tax=Persephonella marina EX-H1 RepID=C0QUW7_PERMH Length = 171 Score = 46.5 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 127 RPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKP 168 +P+R + A +WI PY+D ++ ++K W P Sbjct: 116 QPIRIQPKIAKIWIQPYVDENGNLVDGRYIYVIVKKGGWLLP 157 >UniRef50_B7XGQ8 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGQ8_PSEPU Length = 166 Score = 44.6 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 36/165 (21%) Query: 6 FFIPLLGTLLLYGCAGT----STEFEC-NATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 + + L GC S E+ C TCM+ AK + ++E Sbjct: 5 LILAIAVAALTSGCTSIMGLGSDEYACKGMPNGVTCMS-------AKDVYSATEGDDYKT 57 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 L + EG T ++ PS E AP P+ Sbjct: 58 QLKKEQEGG-------TASSDKPSTGNATRVLIAEGSDNAPVPM---------------- 94 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P P+R+ + I P+ D + + P ++ ++ W Sbjct: 95 -RARNPLPIRSQAVVMRIAIDPWEDEKGDLYVPGFIYTEVEARRW 138 >UniRef50_B2I3Z1 Membrane lipoprotein lipid attachment site n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I3Z1_ACIBC Length = 214 Score = 41.9 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 49/174 (28%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTS---------TEFECNATTSDTCMTMEQANEKAKKLER 51 MK+ + L + L GCA + + F C A C +M Sbjct: 1 MKRKGILLCL--AINLSGCAAFNGGFDGLNGQSSFSCKAPDGILCDSMSGV--------- 49 Query: 52 SSEAKPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREV 111 +A N +P Q V ++++A + Sbjct: 50 -------------MANLNANNLPSQQV------------KHGNSKEVIANTYMQRTRATK 84 Query: 112 KTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 +PV+ PL +T +W+AP+ + + VI W Sbjct: 85 DNAMPVA----PYADEPLLRQPKTLRIWVAPWESSDRTLFDQQYFYLVIDNWKW 134 >UniRef50_C7YTX6 Putative uncharacterized protein (Fragment) n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YTX6_NECH7 Length = 1349 Score = 40.8 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 3/108 (2%) Query: 33 SDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGNFRTM---PVQTVTATTPSGSRPA 89 +D + QA S+ P ++ P G+ + + + + P Sbjct: 626 TDEPEPVTQAQPVESSKPNSTTTNPFSSFKPNGVLGSNNAVNGNSGTLLNGNASASASPF 685 Query: 90 VTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAA 137 + P+Q AP P TA V P +S T T P P G T + Sbjct: 686 QQSTPQQNPFAPTPAPTAEPAKPAVNPFASATTSTAPSPFSNGVATTS 733 >UniRef50_A9AU13 Putative uncharacterized protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU13_BURM1 Length = 229 Score = 40.8 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 8/87 (9%) Query: 87 RPAVTAHPEQKLLAPRPLFTAA-------REVKTVVPVSSV-TPVTPPRPLRTGEQTAAL 138 + A P ++ L PL TA P + TP+ P+R G Sbjct: 69 KATDIAPPNRRDLTAPPLLTAGGQPVQLGSGGAASQPAPADATPLHAEMPVRMGPVIQRT 128 Query: 139 WIAPYIDNQDVYHQPSSVFFVIKPSAW 165 WI ++D D++ +V I PS W Sbjct: 129 WIKRFVDENDMWTSDLTVLKEIAPSRW 155 >UniRef50_A3VN22 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN22_9PROT Length = 153 Score = 39.6 bits (90), Expect = 0.048, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 13/109 (11%) Query: 72 TMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPL-- 129 + V ++T + + P + V P+ P TP PL Sbjct: 11 ALAVTGCSSTMRLENVAGTWSCPRVDGVCADIAAIDRSVVGETGPLPIRGPATPSSPLVT 70 Query: 130 -----------RTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 RTG++ A + +AP ID YH ++ V+ W + Sbjct: 71 VGLEEDGMALTRTGDEVARIVLAPMIDAHGHYHASRVIYAVMSTGGWAR 119 >UniRef50_B8P447 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R RepID=B8P447_POSPM Length = 922 Score = 38.8 bits (88), Expect = 0.069, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 32/95 (33%) Query: 40 EQANEKAKKLERSSEAKPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLL 99 ++ A + + K S P L EG PV T+ PS R P + + Sbjct: 362 DELEGIAPRSAQEQYLKKFGFSPPPLPEGFSHQNPVVVDTSRQPSAGRMTPPPSPGRAVS 421 Query: 100 APRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQ 134 PRP T +V S V R ++ Sbjct: 422 EPRPAQTQTGFGASVNGSGSGEHVNQLVAKRKKDK 456 >UniRef50_A4V9A7 Plasmid transfer protein n=8 Tax=Enterobacteriaceae RepID=A4V9A7_SALPK Length = 316 Score = 38.8 bits (88), Expect = 0.078, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 20/112 (17%) Query: 74 PVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAR------EVKTVVPVSSVTPV---- 123 P +A + VT P + +AP A++ + V P S V Sbjct: 160 PFLHPSAEVVKKTTQVVTPAPAPRYVAPNSDINASKDLYSINNGQPVNPTLSSGQVQQYR 219 Query: 124 --------TPPRPLRTGEQ--TAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P PL +Q + APY D+ D + P V+ +KP W Sbjct: 220 TQGYKQAVVAPEPLAVLQQGRVMRITFAPYTDDNDALNLPGFVYVNVKPQTW 271 >UniRef50_C7PR71 Mannosyl-glycoproteinendo-beta-N-acetylglucosami dase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PR71_CHIPD Length = 619 Score = 38.4 bits (87), Expect = 0.096, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 1/105 (0%) Query: 38 TMEQANEKAKKLERSSEAKPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQK 97 T Q A K + + P + + T P+ + P T + Sbjct: 407 TAAQGTPAASKPATTQSSAPAQTTPTGTQPTQSANTQPSSPAQTKPAQTTPTGTQPAQTT 466 Query: 98 LLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAP 142 +A +P +++R T + P +P+ T T AP Sbjct: 467 PVASQP-VSSSRPENTTPSNTEPAPPVQTQPVTTPASTTPAQTAP 510 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P41069 Protein traV n=41 Tax=root RepID=TRAV_ECOLI 186 3e-46 UniRef50_A6TIT8 F pilus assembly protein n=5 Tax=Enterobacteriac... 149 4e-35 UniRef50_B2VB10 TraV protein n=1 Tax=Erwinia tasmaniensis RepID=... 133 3e-30 UniRef50_A4SUD2 TraV protein n=1 Tax=Aeromonas salmonicida subsp... 130 2e-29 UniRef50_B6ICF5 TraV protein n=1 Tax=Escherichia coli SE11 RepID... 130 2e-29 UniRef50_A4WGS6 Membrane lipoprotein lipid attachment site n=3 T... 122 3e-27 UniRef50_B3EB61 Putative uncharacterized protein n=2 Tax=Desulfu... 117 1e-25 UniRef50_D2TZZ9 Conjugal transfer protein TraV n=1 Tax=Arsenopho... 116 3e-25 UniRef50_B7J830 Conjugal transfer protein TraV, putative n=1 Tax... 110 3e-23 UniRef50_A2SNK5 Sex pilus assembly protein n=1 Tax=Methylibium p... 109 5e-23 UniRef50_C4NUX0 TraV n=11 Tax=Gammaproteobacteria RepID=C4NUX0_E... 109 5e-23 UniRef50_A1WDF5 Membrane lipoprotein lipid attachment site n=1 T... 108 8e-23 UniRef50_D2U0R1 Conjugative transfer pilus assembly protein TraV... 106 3e-22 UniRef50_C3NU44 Conjugative transfer protein TraV n=17 Tax=Gamma... 104 1e-21 UniRef50_A0B4N5 Putative uncharacterized protein n=1 Tax=Burkhol... 104 1e-21 UniRef50_Q5ZTS3 Conjugative transfer: assembly n=1 Tax=Legionell... 104 2e-21 UniRef50_Q8KNL2 TraV n=4 Tax=Enterobacteriaceae RepID=Q8KNL2_SALTI 102 4e-21 UniRef50_Q8L276 Pilus biogenesis protein n=2 Tax=Enterobacteriac... 100 3e-20 UniRef50_C5ANL3 Putative uncharacterized protein n=1 Tax=Burkhol... 97 3e-19 UniRef50_Q5NYG1 Similar to plasmid-like pilus assembly protein t... 94 2e-18 UniRef50_B7XGQ8 Putative pilus assembly protein n=2 Tax=Pseudomo... 93 4e-18 UniRef50_Q3IUW5 Putative uncharacterized protein traV n=1 Tax=Rh... 92 7e-18 UniRef50_UPI00016ACDCC membrane lipoprotein lipid attachment sit... 88 1e-16 UniRef50_A4JTP1 Membrane lipoprotein lipid attachment site n=1 T... 88 1e-16 UniRef50_Q5NX54 Pilus assembly protein n=1 Tax=Aromatoleum aroma... 85 1e-15 UniRef50_Q0F362 Putative uncharacterized protein n=1 Tax=Maripro... 82 9e-15 UniRef50_C0QUW7 Type IV conjugative transfer system protein TraV... 74 1e-12 UniRef50_C5SIK6 Putative uncharacterized protein n=1 Tax=Asticca... 70 3e-11 UniRef50_B4RLR9 TraV n=9 Tax=Neisseria gonorrhoeae RepID=B4RLR9_... 69 5e-11 UniRef50_B4EQI0 Putative uncharacterized protein n=1 Tax=Burkhol... 69 5e-11 Sequences not found previously or not previously below threshold: UniRef50_D0SGY5 Membrane lipoprotein lipid attachment site n=1 T... 79 5e-14 UniRef50_B2I3Z1 Membrane lipoprotein lipid attachment site n=1 T... 77 3e-13 UniRef50_A0R7Q9 Putative uncharacterized protein n=1 Tax=Pelobac... 73 3e-12 UniRef50_Q2LU00 Hypothetical exported protein n=1 Tax=Syntrophus... 70 3e-11 UniRef50_B8EFV4 Type IV conjugative transfer system protein TraV... 62 7e-09 UniRef50_Q1MY40 Putative uncharacterized protein n=1 Tax=Bermane... 60 3e-08 UniRef50_B2LS60 TraV type IV conjugative transfer system lipopro... 54 3e-06 UniRef50_A0L304 Putative uncharacterized protein n=1 Tax=Shewane... 52 9e-06 UniRef50_A9AU13 Putative uncharacterized protein n=1 Tax=Burkhol... 51 2e-05 UniRef50_A4V9A7 Plasmid transfer protein n=8 Tax=Enterobacteriac... 49 9e-05 UniRef50_B6ESX8 Putative lipoprotein, putative TraV protein n=1 ... 48 1e-04 UniRef50_Q1NGT4 Putative uncharacterized protein n=1 Tax=Sphingo... 48 2e-04 UniRef50_A5L095 Putative uncharacterized protein n=1 Tax=Vibrion... 47 3e-04 UniRef50_A5VGR2 Type IV conjugative transfer system protein TraV... 47 3e-04 UniRef50_A4V6R0 Putative conjugative transfer protein n=1 Tax=Ps... 42 0.010 UniRef50_C1SHE2 Type IV conjugative transfer system lipoprotein ... 42 0.010 UniRef50_A3VN22 Putative uncharacterized protein n=1 Tax=Parvula... 39 0.054 UniRef50_A8JAX3 Predicted protein n=2 Tax=Chlamydomonas reinhard... 39 0.058 >UniRef50_P41069 Protein traV n=41 Tax=root RepID=TRAV_ECOLI Length = 171 Score = 186 bits (471), Expect = 3e-46, Method: Composition-based stats. Identities = 171/171 (100%), Positives = 171/171 (100%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA Sbjct: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV Sbjct: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN 171 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN Sbjct: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN 171 >UniRef50_A6TIT8 F pilus assembly protein n=5 Tax=Enterobacteriaceae RepID=A6TIT8_KLEP7 Length = 194 Score = 149 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 100/194 (51%), Positives = 118/194 (60%), Gaps = 23/194 (11%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MK+ IPL G LLL GCAGT TEF+CNATTSDTCMTMEQANEKAK E S+AKP AA Sbjct: 1 MKELMLLIPLGGALLLTGCAGTETEFQCNATTSDTCMTMEQANEKAKLKEERSDAKPAAA 60 Query: 61 SLPRLAEGNFRTMPV------------QTVTATTPSGSRPAV----TAHPEQKLLAPRPL 104 LP+LAEGNFRT V Q A +R TA E Sbjct: 61 GLPQLAEGNFRTTSVNSYPLPPQSNLTQARVAAEKDRARAVYLNNPTAKNEATYFETEKR 120 Query: 105 FTAAREVKTVVPVSSVTPVTP-------PRPLRTGEQTAALWIAPYIDNQDVYHQPSSVF 157 + VK +PV + T +P PRPLR GE+T +LWIAPY+D+ DVYHQP++V Sbjct: 121 LQSLPVVKMSLPVVASTFTSPSTPPGNYPRPLRKGEETTSLWIAPYVDSDDVYHQPATVL 180 Query: 158 FVIKPSAWGKPRIN 171 FV+KPSAWG+PR+N Sbjct: 181 FVVKPSAWGQPRLN 194 >UniRef50_B2VB10 TraV protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB10_ERWT9 Length = 177 Score = 133 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 33/184 (17%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MK+ F + T LL GCAG + +F+CN T +D C+TMEQA A + + + Sbjct: 1 MKKIIFLLST--TALLSGCAGMNDDFDCNKTATDQCLTMEQAQGLASQGKSLDDLDASKG 58 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 G+ + + +TV S ++P + ++ P+ + + ++ P +V Sbjct: 59 -------GSEKKVVSETVATKPLSNNKPVINSY-------INPVESGSTVKSSLFPQQNV 104 Query: 121 TPVTPPRPLRTGEQT-----------------AALWIAPYIDNQDVYHQPSSVFFVIKPS 163 PV P+R E+ +WI+P++D D +HQPS V FV + S Sbjct: 105 HPVISTTPMRVIEKVNPNSAGSVNSVRYQDVTQRIWISPWVDKDDSFHQPSIVEFVTEHS 164 Query: 164 AWGK 167 +W K Sbjct: 165 SWKK 168 >UniRef50_A4SUD2 TraV protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUD2_AERS4 Length = 183 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 76/182 (41%), Positives = 97/182 (53%), Gaps = 15/182 (8%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKL-ERSSEAKPVA 59 MK+ F + LL GCAG+++EFECNATTSD CMTMEQANE A+K E + K A Sbjct: 1 MKR--FLCLSVFCALLGGCAGSASEFECNATTSDRCMTMEQANEMARKKTEGDTRGKQAA 58 Query: 60 ASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLL-APRPLFTAAREVK---TVV 115 LP L E ++ T ++ A T P ++ PRPL T A T + Sbjct: 59 GGLPALVELPAPSVSPLETPVMTSVPAQSATTMPPSARISPTPRPLTTDAPSSSPLRTTL 118 Query: 116 PVSSVTPVTPPR--------PLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 PV S PPR PLR + TA++WIAP+ID DV+HQP V FV+ P W Sbjct: 119 PVLSNEVCAPPRCDNLGEATPLRLIDATASVWIAPWIDASDVFHQPGRVSFVVTPGTWQL 178 Query: 168 PR 169 P+ Sbjct: 179 PQ 180 >UniRef50_B6ICF5 TraV protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF5_ECOSE Length = 177 Score = 130 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 14/178 (7%) Query: 3 QTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAAS- 61 + + + L G L+L GCAG +EF+CN T S+ CMTM++AN KA+ + + + K Sbjct: 2 KPALLMVLAGGLMLTGCAGMKSEFDCNDTASNGCMTMDEANNKARTMTENQKGKAAEGRR 61 Query: 62 -LPRLA--------EGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVK 112 LP LA + PV A + A +P + +A Sbjct: 62 ILPPLAAVPVIKASATSAGGSPVTKNAAAAVTPG--ATARNPFRGSVAGTGGVAVTSGGA 119 Query: 113 TVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRI 170 + PV S +T RP+R TA +WIA ++D+Q V+HQPS V F ++P+ W + Sbjct: 120 QISPVWSDIGMT--RPVRLPSTTARMWIAAWVDDQAVWHQPSVVSFEVEPARWQHQEV 175 >UniRef50_A4WGS6 Membrane lipoprotein lipid attachment site n=3 Tax=Enterobacteriaceae RepID=A4WGS6_ENT38 Length = 185 Score = 122 bits (306), Expect = 3e-27, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 82/179 (45%), Gaps = 20/179 (11%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 MK+ L L GCAG +++F+CN T +D C+T +AN+ A + + A Sbjct: 1 MKK--LLGAALLCSALTGCAGLNSDFDCNKTATDQCLTTGEANKLAAQGKNLDSLAADKA 58 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAV---TAHPEQKLLAPRPLFTA--AREVKTVV 115 + E T+P TA + RP T K +APRPL TA V Sbjct: 59 AKKPAGE----TLPALRNTAPVVNPGRPVSVAATGTAIAKPIAPRPLATAPSGSTGSLVT 114 Query: 116 PVSSVTPVTPPRPL---------RTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P+++ VTP P+ R + T LWIAP++D D +HQP+ V FV S W Sbjct: 115 PLTTAGHVTPVTPVNTAGRVPVQRIPDATQRLWIAPWVDTDDNFHQPAVVEFVKNKSHW 173 >UniRef50_B3EB61 Putative uncharacterized protein n=2 Tax=Desulfuromonadales RepID=B3EB61_GEOLS Length = 164 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTS---TEFECNATTSDTCMTMEQANEKAKKLERSSEAKP 57 MK+ + +G L + GCA + + F C T++ C++++ A +++ S P Sbjct: 1 MKKA---LITIGMLTMSGCALLNPYESSFSCPETSNGKCVSVQTAYKESTASPGKSSEAP 57 Query: 58 VAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPV 117 N A + + ++ HP K T R + Sbjct: 58 AEHKEDDCNADNA--------AAGLCTEGKKDISLHPSAKENG-----TYNRYQSALFDK 104 Query: 118 SSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 S P P+ +T + + PY + ++ V+F + W Sbjct: 105 FSGLLKEPVTPVVAPPKTMRVLLLPYTGQDNEFYMLRYVYFFVDEPRWLM 154 >UniRef50_D2TZZ9 Conjugal transfer protein TraV n=1 Tax=Arsenophonus nasoniae RepID=D2TZZ9_9ENTR Length = 176 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 63/172 (36%), Gaps = 16/172 (9%) Query: 7 FIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKA---------KKLERSSEAKP 57 + G +LL GCAG ++EFE D+ M +A+E K E AK Sbjct: 6 IGLISGIVLLSGCAGMNSEFEFGKPAKDSGYWMSEADEMTNTASDLVAQHKGEVVKSAKG 65 Query: 58 VAASLPRLAEGNFRTMPVQTVTATTPSGSRPAV--TAHPEQKLLAPRPLFTAAREVKTVV 115 S RL + + PV +T S + P P + L + T Sbjct: 66 FNLSAYRLIQLSNLQTPVTLLTERAISANNPNSMKVKSPASRWLTNNF----TAQSPTAC 121 Query: 116 PVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P S P R E+ WIAPY+ +V H V+FV S W Sbjct: 122 PASPCL-GEVTAPSRQAERITRAWIAPYVSPDEVVHTGEVVYFVTTSSTWAN 172 >UniRef50_B7J830 Conjugal transfer protein TraV, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J830_ACIF2 Length = 165 Score = 110 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 14/161 (8%) Query: 7 FIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLA 66 F + L GCA T C C+ + + + P +L A Sbjct: 5 FALASAIIALGGCA---TSHPCIHGKGGVCVGPRETWGITR---HRDQVNPDKRTLK--A 56 Query: 67 EGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPP 126 + R + + +A + TA +Q L + P P Sbjct: 57 QNEARKLLHTSPSARDQLPNIHPQTAPSQQTLDGGKAAQYTTGNQPLQAP------TGYP 110 Query: 127 RPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 +PL T + +W+APY + H P V+ +I+P +W Sbjct: 111 KPLLTQPRVLRVWVAPYRGPEGNLHFPGMVYSIIQPQSWTL 151 >UniRef50_A2SNK5 Sex pilus assembly protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNK5_METPP Length = 230 Score = 109 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 51/167 (30%), Gaps = 11/167 (6%) Query: 6 FFIPLLGTLLLYGCAGT-----STEFEC-NATTSDTCMTMEQANEKAKKLERSSEAKPVA 59 + + TLL GC S E+ C TC T Sbjct: 8 LLLAMGVTLLASGCGTILNTAGSDEYGCTPGEAKVTCRTPTAIYRSTN-GSPPVAETDSP 66 Query: 60 ASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSS 119 + +L G + + A P P V P + + + Sbjct: 67 VAWSKLIRGTSGALVEEQPDAAAP---IPGVARSDASGGERRTPNERSVPGLNAQT-LGL 122 Query: 120 VTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 V RP+R Q +WIAP+ID D H PS +F ++ W Sbjct: 123 VGATIGGRPVREPAQVMRIWIAPWIDKNDDLHYPSYLFTEVQARRWT 169 >UniRef50_C4NUX0 TraV n=11 Tax=Gammaproteobacteria RepID=C4NUX0_ECOLX Length = 192 Score = 109 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 47/171 (27%), Gaps = 32/171 (18%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTS---TEFECN-ATTSDTCMTMEQANEKAKKLERSSEAK 56 ++ L+L GC+ + E+ C CM+ K Sbjct: 23 VRSAKMLGVGAALLILSGCSTFNIGKDEYSCPGMPNGVQCMSARDVYAATNDGNVPRPMK 82 Query: 57 PVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVP 116 P A+G + S + + +APR Sbjct: 83 PEEVEAKAEADGEGS---------SNVSANSSSSGDPVIDNYVAPR-------------- 119 Query: 117 VSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P P+RT Q +W+AP+ D V+ I+P W Sbjct: 120 -----LPDRPIPIRTPAQVMRIWVAPWEDTNGDLIVTGYVYTEIEPRRWVI 165 >UniRef50_A1WDF5 Membrane lipoprotein lipid attachment site n=1 Tax=Acidovorax sp. JS42 RepID=A1WDF5_ACISJ Length = 216 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 48/172 (27%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTS-----TEFECNATTSDTCMTMEQANEKAKKLERSSEA 55 MK + + + L GC+ S +EF C A C +M Sbjct: 1 MKALALTFGIGAVVALSGCSSMSGFDAKSEFACKAPDGILCESMSGIY------------ 48 Query: 56 KPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVV 115 A + +P Q V A G P + + Sbjct: 49 ----------ANAQAKNLPGQRVNAR---GEAPVELSQAKAGSN---------------- 79 Query: 116 PVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P+ P+R+ + +W AP+ D H S V+ + W Sbjct: 80 --VMTKPIYSGTPIRSAPRLLRVWFAPWEDTDGDLHDQSYVYLPVDSGRWLI 129 >UniRef50_D2U0R1 Conjugative transfer pilus assembly protein TraV n=1 Tax=Arsenophonus nasoniae RepID=D2U0R1_9ENTR Length = 165 Score = 106 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 55/171 (32%), Gaps = 29/171 (16%) Query: 6 FFIPLLG--TLLLYGCAGT--STEFEC-NATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 F+PLLG L L C+ ++EF C S TCM++ ++ E E Sbjct: 1 MFMPLLGWVALSLTACSSLVGNSEFGCKGMPNSVTCMSVRDVHKLT-DGEDYQE------ 53 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 + + + VT Q L A E PV Sbjct: 54 ---------------KINLVSKKQQNGEVVTKDEIQSLTKGNKNKRIAIESGQYTPVPK- 97 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRIN 171 P P+P+R+ + I PY + ++ I P AW N Sbjct: 98 -PAADPQPIRSESMVMRILIDPYENTDGDLVVAGYIYTEIVPRAWDVGEPN 147 >UniRef50_C3NU44 Conjugative transfer protein TraV n=17 Tax=Gammaproteobacteria RepID=C3NU44_VIBCJ Length = 216 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 41/167 (24%) Query: 3 QTSFFIPLLGTLLLYGCAGT---STEFECN-ATTSDTCMTMEQANEKAKKLERSSEAKPV 58 + + +G+ LL GC+ S+E+ C C++ + E V Sbjct: 44 KAGLLLLAVGSTLLSGCSSLGLGSSEYGCPGMPDGVRCLSAREVYELTSNGAAPKTIDAV 103 Query: 59 AASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVS 118 A + G+ + + L P ++ Sbjct: 104 ATRI----------------------GAPSGYSQSDLETGLLSHPALPETQQSA------ 135 Query: 119 SVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P+R + +WIAP+ D++ + S VF I+P W Sbjct: 136 ---------PIRIPSRVMRIWIAPWEDDRGDLNLSSYVFTEIEPRRW 173 >UniRef50_A0B4N5 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0B4N5_BURCH Length = 226 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 27/173 (15%) Query: 1 MKQTSFFIPLLGTLLLYGCA----GTSTEFECNATTSDTCMTME--QANEKAKKLERSSE 54 MK L L L GC+ S++F C A C +M AN A L Sbjct: 1 MKNKIMLATLSALLTLTGCSFSGYDASSQFACKAPEGVLCSSMSGIYANAMAHNLPD-QR 59 Query: 55 AKPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTV 114 A + +A G++ Q +A + A RP+ AA + Sbjct: 60 VHTGAGATTNIALGSYAGDFSQASSAPGAAVGGNA------------RPVVGAAGILPKA 107 Query: 115 VPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 + P+ T + +W AP+ D H V+ ++ P W Sbjct: 108 L--------DSGAPVHTASREMRIWFAPWQDADSDLHDQEYVYLIVDPGHWSI 152 >UniRef50_Q5ZTS3 Conjugative transfer: assembly n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTS3_LEGPH Length = 116 Score = 104 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 53/166 (31%), Gaps = 57/166 (34%) Query: 3 QTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASL 62 + + LL ++L GCA + +F+C A TC M+Q + Sbjct: 2 KILTTLLLLPCVVLTGCAKLNEDFDCPAPNGGTCKRMDQVYDMVNGK------------- 48 Query: 63 PRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTP 122 A TPS + V Sbjct: 49 -------------GKSLAVTPSRN-------------------------------PLVMD 64 Query: 123 VTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKP 168 P +P+R GE LWIAPY D YHQ + V+ V+K W + Sbjct: 65 GRPGQPVRYGEGVMPLWIAPYEDTDGNYHQANRVYSVVKEGQWMQQ 110 >UniRef50_Q8KNL2 TraV n=4 Tax=Enterobacteriaceae RepID=Q8KNL2_SALTI Length = 204 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 79/183 (43%), Gaps = 33/183 (18%) Query: 19 CAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGNFRTMP---- 74 CAG + F+C+ATTSDTCMTM +AN+ A+ KP A LP L + Sbjct: 18 CAGVKSSFDCDATTSDTCMTMTKANQLARDKAAKQAGKPAAGGLPSLVNLPATSAVEVPS 77 Query: 75 VQTVTATTPSGSRPAVTAHPEQKLLA-------------PRPL----FTAAREVKTVVPV 117 T PSG+R T P + PRP+ T PV Sbjct: 78 ASRSAVTPPSGTRTVSTTPPVSAGTSAGVNTNTTTSTLTPRPVAGTPVTTTPSSVAYRPV 137 Query: 118 SSVTPVTP------------PRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 SV TP P R+ +Q A +WIAP++D+ + +HQP V FV+ P+ W Sbjct: 138 VSVVTPTPSCQNVRCDNPGTVHPQRSRDQIATVWIAPWVDSDNAFHQPGRVSFVVSPADW 197 Query: 166 GKP 168 P Sbjct: 198 VLP 200 >UniRef50_Q8L276 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae RepID=Q8L276_PROVU Length = 196 Score = 100 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 31/169 (18%) Query: 2 KQTSF-FIPLLGTLLLYGCAGT---STEFEC-NATTSDTCMTMEQANEKAKKLERSSEAK 56 K+ + + + L GC+ +E+ C + TCM+M + E Sbjct: 4 KRIMLALLGVASAVALTGCSSLVGGESEYGCKGMPDAVTCMSMGEVYELTDGSNYKERVS 63 Query: 57 PVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVP 116 V+ + + + + V+ VTA P +A V Sbjct: 64 EVSQQ-----QLSGKQVNVKQVTA----------------GGNGAGPSVSAGAAYVPVPV 102 Query: 117 VSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 S P+P+RT Q + + Y + P V+ I+P W Sbjct: 103 PVSN-----PQPIRTPSQVMRVLVDSYESADGDLNVPGYVYTEIEPRRW 146 >UniRef50_C5ANL3 Putative uncharacterized protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5ANL3_BURGB Length = 232 Score = 96.7 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 50/163 (30%), Gaps = 28/163 (17%) Query: 11 LGTLLLYGCAGT----STEFECNATTSDTCMTME--QANEKAKKLERSSEAKPVAASLPR 64 L L C+ T S+ F C A C +M AN A L A+ Sbjct: 17 AAVLALSACSFTGYDASSSFACKAPAGVLCNSMSGIYANAMAHNLPDQRVHAGSGAATNL 76 Query: 65 LAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVT 124 P + + + + A P + PR L + A Sbjct: 77 TLGSYADDSPADRASGSRKAAAGGARATSP---GILPRALDSGA---------------- 117 Query: 125 PPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P+RT + +W AP+ D H V+ V+ P W Sbjct: 118 ---PVRTAPRELRVWFAPWQDADSDLHDQEYVYLVVDPGHWSI 157 >UniRef50_Q5NYG1 Similar to plasmid-like pilus assembly protein traV n=5 Tax=Betaproteobacteria RepID=Q5NYG1_AZOSE Length = 195 Score = 94.0 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 44/165 (26%), Gaps = 34/165 (20%) Query: 6 FFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRL 65 +PL + + G G +++ C A C ++ Sbjct: 13 LLLPLGACMNMSGLGG-DSKYACKAPEGVACDSVSGTY---------------------- 49 Query: 66 AEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTP 125 A +P Q + + + P+ A P Sbjct: 50 ANALHHNLPSQRARRSPAARQEESDERAPQATTRAASPATAGDAGTSVT----------- 98 Query: 126 PRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRI 170 P PLR+ + LWI P+ D + V+ + W + Sbjct: 99 PSPLRSQARVLRLWIKPWEDADGDLYDQGYVYVQVDNGQWLIDHV 143 >UniRef50_B7XGQ8 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGQ8_PSEPU Length = 166 Score = 92.8 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 36/165 (21%) Query: 6 FFIPLLGTLLLYGCAGT----STEFEC-NATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 + + L GC S E+ C TCM+ + E Sbjct: 5 LILAIAVAALTSGCTSIMGLGSDEYACKGMPNGVTCMSAKDVYSAT-------EGDDYKT 57 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 L + EG T ++ PS E AP P+ Sbjct: 58 QLKKEQEGG-------TASSDKPSTGNATRVLIAEGSDNAPVPM---------------- 94 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P P+R+ + I P+ D + + P ++ ++ W Sbjct: 95 -RARNPLPIRSQAVVMRIAIDPWEDEKGDLYVPGFIYTEVEARRW 138 >UniRef50_Q3IUW5 Putative uncharacterized protein traV n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUW5_RHOS4 Length = 142 Score = 92.1 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 36/162 (22%) Query: 11 LGTLLLYGCAG-TSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGN 69 L L L GC G T +F C A C T+ +A+ Sbjct: 13 LAILALAGCGGNTQKDFLCPAQEGIACATISEAD-------------------------- 46 Query: 70 FRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPP--- 126 V + +A TP + T E +P + + TVV SS+ P Sbjct: 47 -----VGSGSAVTPVRETFSDTLGKEMSQ-SPLGVGSGKGGKLTVVSQSSMGDGGAPYRA 100 Query: 127 RPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKP 168 + R E+ LWIAP+ D + ++ S V FV++ + W Sbjct: 101 QQYRVPEEVGTLWIAPHRDADGLLYEASFVHFVVREARWASQ 142 >UniRef50_UPI00016ACDCC membrane lipoprotein lipid attachment site n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016ACDCC Length = 215 Score = 88.2 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 51/170 (30%), Gaps = 47/170 (27%) Query: 1 MKQTSFFIPLLGTLLLYGCA----GTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAK 56 M +F + ++ C+ ++F C A C +M Sbjct: 1 MIPRTFLMASATVAVVSACSFSGLDAESKFACKAPDGVVCDSMT---------------- 44 Query: 57 PVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVP 116 SL L GN R + A + S+ P Q + RPLF+ + Sbjct: 45 ---GSLANLQAGNARGTRTSQLAAASAPTSK-----TPAQGAVLARPLFSGS-------- 88 Query: 117 VSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 P+R+ WIAP+ D H S V+ W Sbjct: 89 -----------PIRSAPHVVRAWIAPWEDADGDLHDQSYVYLTTDTGRWL 127 >UniRef50_A4JTP1 Membrane lipoprotein lipid attachment site n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTP1_BURVG Length = 222 Score = 87.8 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 30/155 (19%) Query: 17 YGCAGT-----STEFECN-ATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGNF 70 GC+ + F C C T + + ++ + F Sbjct: 16 TGCSSVFNTADNDSFSCPGMPQGIICKTPMAVYKSTNHMPAPTDNDTPYGPNVKQVGVKF 75 Query: 71 RTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLR 130 + ++ P +AA + + PVS+ RP+R Sbjct: 76 GD---------------------DQGNVVRPELAASAASSLPGLTPVSA---TASARPVR 111 Query: 131 TGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 T Q +WIAP+ID++D H PS +F ++P W Sbjct: 112 TPAQVMRIWIAPWIDSKDDLHYPSYLFTEVQPRRW 146 >UniRef50_Q5NX54 Pilus assembly protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX54_AZOSE Length = 218 Score = 84.8 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 39/169 (23%), Gaps = 23/169 (13%) Query: 3 QTSFFIPLLGTLLLYGCAGT-----STEFECNATTSDTCMTMEQANEKAKKLERSSEAKP 57 + L + L GCA C C + E + Sbjct: 2 KPHALAIALSVIALTGCASALNTAGRDSSSCPGIGPGACASPGDVYAITSGSIDEFEERI 61 Query: 58 VAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPV 117 + + + + E + L TA +P Sbjct: 62 ANHTTENKIDVDA------------------VIRKQKEGERLPSVISSTATSSSVGTMPP 103 Query: 118 SSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 P+R Q + + P+ D D H V+ I+ W Sbjct: 104 ELAIHSDGVAPVRMPAQVMRIRVFPWTDKNDNLHSGGYVYTEIEQRKWT 152 >UniRef50_Q0F362 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F362_9PROT Length = 154 Score = 81.7 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 107 AAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 + + T +P + P P+R+GE+ +W+AP++D YH + V+ V+ W Sbjct: 59 GSPDSPTGMPAI----IRPGDPIRSGERVLRVWMAPWVDVDGDYHDQTYVYLVLDHGRWY 114 Query: 167 KPR 169 R Sbjct: 115 IDR 117 >UniRef50_D0SGY5 Membrane lipoprotein lipid attachment site n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGY5_ACIJO Length = 231 Score = 79.4 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 43/165 (26%) Query: 6 FFIPLLGTLLLYGCAGT-----STEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 F + L + L GCA + F+C A C +M Sbjct: 5 FLVLSLFCIGLSGCATFDGLDGKSSFDCKAPDGVVCDSMTGV------------------ 46 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 +A +P Q V ++ + + + +TA R T + ++ Sbjct: 47 ----MANAKANNLPGQQVNRSSKTPEKGSE--------------YTAVRSKPTSSVLPTM 88 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 P+ +T +W+AP+ + VI W Sbjct: 89 EYT--GAPILRNPKTLRVWVAPWESADRTLFDQQFFYIVIDNWKW 131 >UniRef50_B2I3Z1 Membrane lipoprotein lipid attachment site n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I3Z1_ACIBC Length = 214 Score = 76.7 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 46/176 (26%), Gaps = 49/176 (27%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTS---------TEFECNATTSDTCMTMEQANEKAKKLER 51 MK+ + L + L GCA + + F C A C +M Sbjct: 1 MKRKGILLCLA--INLSGCAAFNGGFDGLNGQSSFSCKAPDGILCDSMSGV--------- 49 Query: 52 SSEAKPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREV 111 +A N +P Q V + + T + Sbjct: 50 -------------MANLNANNLPSQQV--------KHGNSKEVIAN--------TYMQRT 80 Query: 112 KTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 + + PL +T +W+AP+ + + VI W Sbjct: 81 RATKDNAMPVAPYADEPLLRQPKTLRIWVAPWESSDRTLFDQQYFYLVIDNWKWMI 136 >UniRef50_C0QUW7 Type IV conjugative transfer system protein TraV n=1 Tax=Persephonella marina EX-H1 RepID=C0QUW7_PERMH Length = 171 Score = 74.4 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 50/173 (28%), Gaps = 21/173 (12%) Query: 1 MKQTSFFIPLLGTLLLYGCAGT----STEFECNATT-SDTCMTMEQANEKAKKLERSSEA 55 MK+ + + L GC+ F C T C +++ + L + Sbjct: 1 MKRHVLAL-IFVVPFLTGCSSILGIGHENFRCEGTDKGGVCAPVDKVYKDRHLLGNQKDT 59 Query: 56 KPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVV 115 ++E + + G + L P+ + Sbjct: 60 VIDREKEKEISEEKEEGVFYE-----GCYGEVKISKDGKPKCNLKPKAEIKVRVIKEKPF 114 Query: 116 PVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKP 168 +P+R + A +WI PY+D ++ ++K W P Sbjct: 115 ----------AQPIRIQPKIAKIWIQPYVDENGNLVDGRYIYVIVKKGGWLLP 157 >UniRef50_A0R7Q9 Putative uncharacterized protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7Q9_PELPD Length = 161 Score = 73.2 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 21/170 (12%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTS---TEFECNATTSDTCMTMEQANEKAKKLERSSEAKP 57 MK+ + +L TL GC+ S +EF C + C ++ + ++ + Sbjct: 1 MKRVRIALMILLTLTGCGCSILSPYDSEFPCKGGYAGKCSSVRGTHVESLAGL---DGGV 57 Query: 58 VAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPV 117 P EG TA SG + E ++ Sbjct: 58 KEQKNPPPCEGESCQ------TAKYQSGEQRVGLYPQESAE---------GAYKTSLYKR 102 Query: 118 SSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P P+ + + + PY + ++ +F + W Sbjct: 103 LDNLLQEPKMPVVAPPKVMRILMLPYKGQEGEFYMMRHTYFFVDEPRWVL 152 >UniRef50_Q2LU00 Hypothetical exported protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU00_SYNAS Length = 147 Score = 70.1 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 34/154 (22%) Query: 17 YGCAGTS---TEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLAEGNFRTM 73 GC+ + +EF C + C+ +E A ++ + + E Sbjct: 15 GGCSVLNPYKSEFTCPQKENGKCVGVETAYGESLQKKNKDE------------------- 55 Query: 74 PVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGE 133 AT S + + LL + V + P PL Sbjct: 56 --SLEPATKNSPGKAVTGPAQKVNLL----------YQEEVYRKLTGLLRDPVTPLVAPP 103 Query: 134 QTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 + + + PY + P V+F+ + W Sbjct: 104 RVMRVLLLPYKGDGGELFMPRYVYFMADDARWIM 137 >UniRef50_C5SIK6 Putative uncharacterized protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIK6_9CAUL Length = 148 Score = 69.7 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%) Query: 62 LPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVT 121 L A N T + + + L+ P+ A+ + P + T Sbjct: 13 LSACASSNTSTKWTCIAEGDHCTTIADTDSRKDRPQRLSGDPVIFDAKPARWWQPNAPGT 72 Query: 122 PVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P R G+Q + +APY+D Q YH S +F V++ + W Sbjct: 73 ATRDFDPRRDGDQVMRVIVAPYVDAQGDYHARSEIFAVVRRAQWWL 118 >UniRef50_B4RLR9 TraV n=9 Tax=Neisseria gonorrhoeae RepID=B4RLR9_NEIG2 Length = 201 Score = 69.0 bits (166), Expect = 5e-11, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 40/167 (23%), Gaps = 36/167 (21%) Query: 1 MKQTSFFIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAA 60 M + L+L GC+ TM K ++ Sbjct: 9 MMRLKALSITAAILILSGCSTL---------------TMSGIGGSEKFRCPNARNSDDPY 53 Query: 61 SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSV 120 + + A P + T A Sbjct: 54 C-------ESISSNYKASVAGVLKDGMKRQVGQPYTDQSVRTLMLTQAYSS--------- 97 Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P+R+ + A +W+APY+D + S + V+ W Sbjct: 98 -----GTPVRSQSEIARIWVAPYLDTDGDLNDQSFTYVVLNQGDWLI 139 >UniRef50_B4EQI0 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EQI0_BURCJ Length = 175 Score = 69.0 bits (166), Expect = 5e-11, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 20/63 (31%) Query: 105 FTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSA 164 + P+ P+R+ + LW AP+ D + S + VI Sbjct: 24 LATTTKTPAPGSAVLSRPLFSGSPIRSAPRELRLWFAPWEDADGDLYDQSYAYLVIDNGQ 83 Query: 165 WGK 167 W Sbjct: 84 WLI 86 >UniRef50_B8EFV4 Type IV conjugative transfer system protein TraV n=6 Tax=Shewanella baltica RepID=B8EFV4_SHEB2 Length = 152 Score = 62.0 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 44/161 (27%), Gaps = 36/161 (22%) Query: 8 IPLLGTLLLYGCA-GTSTEFECNATTSD-TCMTMEQANEKAKKLERSSEAKPVAASLPRL 65 I L + LL GCA G +++ C+ C M + + + Sbjct: 16 IIALASWLLSGCAAGLDSDYSCDKVGGINGCTNMMEVRQLTDSGVFNQ------------ 63 Query: 66 AEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTP 125 P A T + + Sbjct: 64 --------PQAQSPAVTALSGQSTTALPKLASQ--------------QQDFIPLPRRDRH 101 Query: 126 PRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 PLRT E + I PY++ Q Y S V+ V+ S W Sbjct: 102 GVPLRTSESVQKVTIFPYLNEQGDYVDTSDVYIVVDKSRWT 142 >UniRef50_Q1MY40 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MY40_9GAMM Length = 133 Score = 60.1 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 15/161 (9%), Positives = 43/161 (26%), Gaps = 35/161 (21%) Query: 7 FIPLLGTLLLYGCAGTSTEFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLPRLA 66 F+ + + GC+ ++ CN C ++ ++ K R Sbjct: 6 FLIVFFLIAAVGCS---DKYSCNGYPDMPCASISGVYDRTKDGVRDYR------------ 50 Query: 67 EGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPP 126 +A+ ++ + + + V V Sbjct: 51 ------------SASNYDEEGNWISEEDKPSVSPNNITVSDTYNALNYVSV--------G 90 Query: 127 RPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 P+ + + + P+ D++ ++ ++ W Sbjct: 91 DPILSEPRILRGLLFPWEDSEKDLQAGGYIYLRVEEPKWIM 131 >UniRef50_B2LS60 TraV type IV conjugative transfer system lipoprotein n=4 Tax=Vibrio RepID=B2LS60_9VIBR Length = 126 Score = 53.6 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 49/167 (29%), Gaps = 54/167 (32%) Query: 1 MKQTSFFIPLLGTLLLYGCA-GTSTEFECNATTSDT-CMTMEQANEKAKKLERSSEAKPV 58 MK+ + L L L GCA G ++ C + C TM+ Sbjct: 1 MKRIIISLTL---LTLSGCAAGLDGDYGCKKIGGTSSCTTMDDI---------------- 41 Query: 59 AASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVS 118 + P A E P A T++P Sbjct: 42 --------------------------RNNPYGHAGQEHGDAILTP---TAPASFTLLPR- 71 Query: 119 SVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAW 165 +P R+ E+ + I P+ D + Y V+FV+ S W Sbjct: 72 ---RDRHGQPTRSRERVKKVTIFPFKDQDNDYVDTMDVYFVLDDSQW 115 >UniRef50_A0L304 Putative uncharacterized protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L304_SHESA Length = 242 Score = 52.0 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 45/174 (25%), Gaps = 13/174 (7%) Query: 2 KQTSFFIPLLGTLLLYGCAGT----STEFECNAT--TSDTCMTMEQANEKAKKLERSSEA 55 + + + ++GC C T + C T + + A Sbjct: 4 RALKLSMVAVSLATIFGCQSMFETGEEPTVCVNTQNSGLPCTTTREILKLADTPGGIEAE 63 Query: 56 KPVAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVV 115 K A+ + + + +G P A + + Sbjct: 64 KARRAAESDEDCPDCKVPKKSVANSGAMAGYGLDANGQPITLNEVTNAYMFTADNNRAL- 122 Query: 116 PVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPR 169 P P +R + + AP+ D++ V+ I+ + R Sbjct: 123 ------PAPEPIAVRQAPKMLRVAFAPWQDDKGRLQNVGYVYTEIETRKYTYGR 170 >UniRef50_A9AU13 Putative uncharacterized protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU13_BURM1 Length = 229 Score = 50.9 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 49/169 (28%), Gaps = 21/169 (12%) Query: 6 FFIPLLGTLLLYGCAGT-----STEFECN---ATTSDTCMTMEQANEKAKKLERSSEAKP 57 I + L C+ S ++CN TS C + Sbjct: 1 MMILPAIAVSLAACSSAFNPIGSNTYDCNRKQDPTSIYCHSFRAVEASTN---------- 50 Query: 58 VAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPV 117 LP +R +TA P +P+ + + Sbjct: 51 --GRLPDSRFDTELKFSEYDKATDIAPPNRRDLTAPPLLTA-GGQPVQLGSGGAASQPAP 107 Query: 118 SSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 + TP+ P+R G WI ++D D++ +V I PS W Sbjct: 108 ADATPLHAEMPVRMGPVIQRTWIKRFVDENDMWTSDLTVLKEIAPSRWT 156 >UniRef50_A4V9A7 Plasmid transfer protein n=8 Tax=Enterobacteriaceae RepID=A4V9A7_SALPK Length = 316 Score = 48.5 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 23/143 (16%) Query: 46 AKKLERSSEAKPVAAS---LPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPR 102 + R PV ++ P +A + VT P + +AP Sbjct: 129 STIGPRPISGNPVNSNVRMTTSYNSNGSSVNPFLHPSAEVVKKTTQVVTPAPAPRYVAPN 188 Query: 103 PLFTAAREVKTV---VPVSSVTPVTPPRPLRTGE-----------------QTAALWIAP 142 A++++ ++ PV+ + RT + + AP Sbjct: 189 SDINASKDLYSINNGQPVNPTLSSGQVQQYRTQGYKQAVVAPEPLAVLQQGRVMRITFAP 248 Query: 143 YIDNQDVYHQPSSVFFVIKPSAW 165 Y D+ D + P V+ +KP W Sbjct: 249 YTDDNDALNLPGFVYVNVKPQTW 271 Score = 39.7 bits (90), Expect = 0.036, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 11/132 (8%) Query: 1 MKQTSFFIPLLGTLL-LYGCAGTSTEFECNA-TTSDTCMTMEQANEKAKKLERSSEAKPV 58 +K+ F ++G+ L GC S E EC C + E + Sbjct: 3 IKKVIFSALVVGSSSYLAGCTIGSAESECPGIEKGVICKGPREVMELTNN-------RDD 55 Query: 59 AASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTV--VP 116 + L + + + + P +P+ +L +P+ EVK V +P Sbjct: 56 LSGLGEEEANSGKGKSAVNDSQYPAQLTPPGAVQYPKSSVLVNKPVTYTTTEVKPVGQLP 115 Query: 117 VSSVTPVTPPRP 128 V + P Sbjct: 116 VMYDQTLKMGAP 127 >UniRef50_B6ESX8 Putative lipoprotein, putative TraV protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ESX8_ALISL Length = 133 Score = 48.2 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 44/152 (28%), Gaps = 49/152 (32%) Query: 17 YGCA-GTSTEFECNATTSDT-CMTMEQANEKAKKLERSSEAKPVAASLPRLAEGNFRTMP 74 GCA G + EF CN + C TM A++ + N + Sbjct: 19 SGCAAGMNEEFSCNEVGGVSGCATMGDI----------------RANMSAYEQHNNK--- 59 Query: 75 VQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQ 134 +R T P T +P R+ ++ Sbjct: 60 -----------NRTTATLQAPSSEFLALPRRT-----------------REGQPTRSEDK 91 Query: 135 TAALWIAPYIDNQDVYHQPSSVFFVIKPSAWG 166 + I P+ + + + ++F++ S W Sbjct: 92 VKKITIFPFTNEHGHFIDTTDIYFILSDSQWQ 123 >UniRef50_Q1NGT4 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGT4_9SPHN Length = 210 Score = 47.8 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 49/169 (28%), Gaps = 29/169 (17%) Query: 9 PLLGTLLLYGCAGTST-------EFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAAS 61 PLL L C + +F C + C+ E+A E A A+ Sbjct: 18 PLLMLASLPACTAIGSVMSPYPEKFSCKNSDHGQCIHPERAYEDA--------VAGAASR 69 Query: 62 LPRLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVT 121 + + M A P+G + A P +V Sbjct: 70 SDPKVTNDRKMMKGSATAAPAPAGRAKSKAATP------------YLGYRDSVYRELQGL 117 Query: 122 PVTPPRPLRTGEQTAALWIAPYIDNQ--DVYHQPSSVFFVIKPSAWGKP 168 P P+ +T I PY + + D + P ++ ++ W Sbjct: 118 VEAPVTPMLRSGRTIRTLILPYANRERPDRLYMPRYIYSILDKPQWVVD 166 >UniRef50_A5L095 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L095_9GAMM Length = 92 Score = 47.0 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 3/80 (3%) Query: 89 AVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVT---PPRPLRTGEQTAALWIAPYID 145 T + + + P + P R+ E+ L + P+ID Sbjct: 2 NEVRDNVYGYTGGSGNATVSSQARLAPPSAFTLLPRRSRDGEPERSQEEVKKLTVFPFID 61 Query: 146 NQDVYHQPSSVFFVIKPSAW 165 + Y V+FV+ S W Sbjct: 62 KDNHYIDTMDVYFVLDDSRW 81 >UniRef50_A5VGR2 Type IV conjugative transfer system protein TraV n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGR2_SPHWW Length = 337 Score = 46.6 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 47/167 (28%), Gaps = 40/167 (23%) Query: 8 IPLLGTLLLYGCAGTST----EFECNATTSDTCMTMEQANEKAKKLERSSEAKPVAASLP 63 + L L+ GCA + F C A + Sbjct: 19 LALAVLPLMGGCASFGSNIAGSFSCPAPDGI-------------------------CAPS 53 Query: 64 RLAEGNFRTMPVQTVTATTPSGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPV 123 + + PS + P P A + +T V PV Sbjct: 54 SSIDDRALALITAEAPDAVPSPAGPYR-----------DPDMGAGKGARTAVASPRRMPV 102 Query: 124 TPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGKPRI 170 + RT E+ + PYID + H+ S+V V+ W + I Sbjct: 103 SIGEAGRTREKVLRIVFQPYIDERGRLHEASAVHAVVAQGEWQQQAI 149 >UniRef50_A4V6R0 Putative conjugative transfer protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V6R0_PSEFS Length = 107 Score = 41.6 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 121 TPVTPPRPLRTGEQTAALWIAPYIDNQ-DVYHQPSSVFFVIKPSAWGK 167 P P+R + A +W+ PY D + V H + +++ + W Sbjct: 60 GSSDPYYPIRNPDVVAPVWVVPYADKRTGVKHGGRWDYVIMEEAGWAN 107 >UniRef50_C1SHE2 Type IV conjugative transfer system lipoprotein (TraV) n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHE2_9BACT Length = 135 Score = 41.6 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 128 PLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKPSAWGK 167 PL T +T + I PY+D+ H SS++ +I+ W Sbjct: 83 PLTTKAKTLKVTILPYVDDAGRLHMLSSLYIIIQKPDWII 122 >UniRef50_A3VN22 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN22_9PROT Length = 153 Score = 39.3 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%) Query: 103 PLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPYIDNQDVYHQPSSVFFVIKP 162 PL + V+ RTG++ A + +AP ID YH ++ V+ Sbjct: 55 PLPIRGPATPSSPLVTVGLEEDGMALTRTGDEVARIVLAPMIDAHGHYHASRVIYAVMST 114 Query: 163 SAWG 166 W Sbjct: 115 GGWA 118 >UniRef50_A8JAX3 Predicted protein n=2 Tax=Chlamydomonas reinhardtii RepID=A8JAX3_CHLRE Length = 1637 Score = 39.3 bits (89), Expect = 0.058, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 7/127 (5%) Query: 29 NATTSDTCMTMEQANEKAKKLERSS-----EAKPVAASLPRLAEGNFRTMPVQTVTATTP 83 +T ++ + + +A P S A + P+ +A P Sbjct: 1507 KGPDGGEAVTAQEEEGDVECICGCDPCACFDAAPSNGSNGAEAGELASSQPISERSALEP 1566 Query: 84 SGSRPAVTAHPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRPLRTGEQTAALWIAPY 143 S + + P+Q + VK P + T P + + + +AP Sbjct: 1567 SAAEHQLPPPPQQSNSGRSHSLSGPEYVKAPEPATYNTAFEQPALICSPPRLLRRAVAP- 1625 Query: 144 IDNQDVY 150 D V Sbjct: 1626 -DQHGVL 1631 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.302 0.101 0.271 Lambda K H 0.267 0.0309 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 705,840,367 Number of Sequences: 3077464 Number of extensions: 22293057 Number of successful extensions: 167144 Number of sequences better than 1.0e-01: 91 Number of HSP's better than 0.1 without gapping: 126 Number of HSP's successfully gapped in prelim test: 119 Number of HSP's that attempted gapping in prelim test: 166318 Number of HSP's gapped (non-prelim): 803 length of query: 171 length of database: 1,040,396,356 effective HSP length: 119 effective length of query: 52 effective length of database: 674,178,140 effective search space: 35057263280 effective search space used: 35057263280 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 87 (38.5 bits)