18/01/2012 15:24:43 : INFO  : Run start: Wed Jan 18 15:24:43 GMT 2012
18/01/2012 15:24:43 : INFO  : Initialised job
18/01/2012 15:24:43 : INFO  : Renaming log file 'phyre2_20120118_152443.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/phyre_20120118_152443.log'
18/01/2012 15:24:44 : INFO  : Initialised job:
Sequence
>batch____
MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIRENQRLRLSPA
GHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAVRIPATLAEFNRRYPKIQF
SLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQV
NGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE
SMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVPDSARQGYQ

18/01/2012 15:24:44 : INFO  : Checked sequence
18/01/2012 15:24:44 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 15:24:44 : INFO  : PSI-BLAST 3 iterations
18/01/2012 15:27:17 : INFO  : PSI-BLAST 5 iterations
18/01/2012 15:31:28 : INFO  : Finished PSI-BLAST
18/01/2012 15:31:29 : INFO  : Running Buildali to generate a3m file
18/01/2012 21:14:39 : INFO  : Converting to HMM
18/01/2012 21:14:57 : INFO  : Calibrating HMM
18/01/2012 21:15:05 : INFO  : Searching HMM database
18/01/2012 21:20:39 : INFO  : Finished buildali
18/01/2012 21:20:39 : INFO  : Predicting secondary structure
18/01/2012 21:20:40 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 21:20:40 : INFO  : Predicting Disordered regions
18/01/2012 21:20:40 : INFO  : Predicted Disorder (Disopred)
18/01/2012 21:20:40 : INFO  : Running memsat_svm check
18/01/2012 21:22:48 : INFO  : Running memsat_svm full
18/01/2012 21:33:10 : INFO  : Predicted Transmembrane (memsat_svm) ID 'cb26341661cb4476'
18/01/2012 21:33:10 : INFO  : Initialising fold library search
18/01/2012 21:33:10 : INFO  : Initialised search input
18/01/2012 21:33:10 : INFO  : Building Ensemble models
18/01/2012 21:33:10 : INFO  : Building hh.c3fzjC_.model.1.pdb
18/01/2012 21:33:11 : INFO  : Building hh.c2esnC_.model.2.pdb
18/01/2012 21:33:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/hh.c2esnC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/c2esnC_.1.pdb
18/01/2012 21:33:12 : INFO  : Building hh.c1iz1B_.model.3.pdb
18/01/2012 21:33:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/hh.c1iz1B_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/c1iz1B_.3.pdb
18/01/2012 21:33:13 : INFO  : Building hh.c3hhgF_.model.4.pdb
18/01/2012 21:33:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/hh.c3hhgF_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/c3hhgF_.4.pdb
18/01/2012 21:33:15 : INFO  : Building hh.c3t1bB_.model.5.pdb
18/01/2012 21:33:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/hh.c3t1bB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/c3t1bB_.5.pdb
18/01/2012 21:33:16 : INFO  : Building hh.c3fzvC_.model.6.pdb
18/01/2012 21:33:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/hh.c3fzvC_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cb26341661cb4476/c3fzvC_.6.pdb
18/01/2012 21:33:16 : INFO  : Building c2esnC_.1.pdb
18/01/2012 21:33:18 : INFO  : Building c3fzjC_.2.pdb
18/01/2012 21:33:19 : INFO  : Building c1iz1B_.3.pdb
18/01/2012 21:33:19 : INFO  : Building c3hhgF_.4.pdb
18/01/2012 21:33:20 : INFO  : Building c3t1bB_.5.pdb
18/01/2012 21:33:21 : INFO  : Building c3fzvC_.6.pdb
18/01/2012 21:33:21 : INFO  : Building c3ispA_.7.pdb
18/01/2012 21:33:21 : INFO  : Building c1b9nA_.8.pdb
18/01/2012 21:33:22 : INFO  : Building c3m1eA_.9.pdb
18/01/2012 21:33:22 : INFO  : Building d2esna1.10.pdb
18/01/2012 21:33:23 : INFO  : Building d1b9ma1.11.pdb
18/01/2012 21:33:23 : INFO  : Building d1ixca1.12.pdb
18/01/2012 21:33:24 : INFO  : Building c2hxrA_.13.pdb
18/01/2012 21:33:24 : INFO  : Building c2ijlB_.14.pdb
18/01/2012 21:33:24 : INFO  : Building c3oxnD_.15.pdb
18/01/2012 21:33:25 : INFO  : Building d1utha_.16.pdb
18/01/2012 21:33:25 : INFO  : Building c2uyeA_.17.pdb
18/01/2012 21:33:26 : INFO  : Building d1i6aa_.18.pdb
18/01/2012 21:33:26 : INFO  : Building c3jv9B_.19.pdb
18/01/2012 21:33:26 : INFO  : Building d2fyia1.20.pdb
18/01/2012 21:33:40 : INFO  : Finished HH model building
18/01/2012 21:33:40 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 21:33:47 : INFO  : html domain output complete ID 'cb26341661cb4476'
18/01/2012 22:12:39 : INFO  : Run end  : Wed Jan 18 22:12:39 GMT 2012
