12 c1nriA_ Probab=99.90   E-value=6.3e-22  Score=165.23  Aligned_columns=178  Identities=16%

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-----------------
Q ss_conf             7999999999999999999998356--899999999984699599995483599999999998-----------------
Q batch____         4 ALLNAGRQTLMLELQEASRLPERLG--DDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATL-----------------   64 (321)
Q Consensus         4 ~~l~~a~~v~~~~~~~l~~~~~~ld--~~~~~av~~i~~~~~rI~i~G~G~S~~iA~~~~~~l-----------------   64 (321)
                      +..+..+.+.+.+.+..+...+.++  ++..+.+...+..++||+++|.|+|+.+|.+++..|                 
T Consensus        20 ~~~~~l~~~~~~d~~~~~av~~~l~~I~~ai~~~~~~l~~~grI~~~G~GtSg~la~~~A~el~~t~g~~~~~~~~~iag   99 (248)
T c1nriA_          20 STLEIVRLXNEEDKLVPLAIESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEXVKGIIAG   99 (248)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCC
T ss_conf             98999999999999999999999999999999999999619919998260789999999998754217773100133215


Q ss_pred             -----HCCCCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCEEEE
Q ss_conf             -----505985999666146888986089987899982898999999999999977980999977998610321775898
Q batch____        65 -----ASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLD  139 (321)
Q Consensus        65 -----~~~g~~~~~~~~~~~~~~~~~~i~~~DvvI~iS~sG~t~e~~~~~~~ak~~g~~iI~IT~~~~s~la~~aD~~l~  139 (321)
                           .+.+.......+.+........++++|++|+||+||+|+++++++++||++|+++|+||++++||++++||++|.
T Consensus       100 g~~~l~~~~e~~ed~~~~~~~~~~~~~~~~~DvvI~IS~SG~t~~vi~al~~Ak~~Ga~ti~It~~~~s~l~~~aD~~l~  179 (248)
T c1nriA_         100 GECAIRHPVEGAEDNTKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEXAEIADIAIE  179 (248)
T ss_dssp             CTHHHHSCCTTGGGCTTHHHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEE
T ss_pred             CCHHHHEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEE
T ss_conf             32444010234556625899999863899987899992686888999999999977980999954899830100787885


Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             2076536423522079999999999999999998728986687
Q batch____       140 ISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNEEDF  182 (321)
Q Consensus       140 ~~~~~e~~~~~~~pt~S~~~~l~~~dal~~~~~~~~~~~~~~~  182 (321)
                      ++..+|.. .+..++.+.++|..++++|..++|-+.|...+.+
T Consensus       180 ~~~GpE~~-~gstrmk~~taqk~iLn~lsT~~~~~~Gk~~~n~  221 (248)
T c1nriA_         180 TIVGPEIL-TGSSRLKSGTAQKXVLNXLTTASXILLGKCYENL  221 (248)
T ss_dssp             CCCCSCSS-TTCTTTHHHHHHHHHHHHHHHHHHHHTTSCBTTB
T ss_pred             CCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
T ss_conf             68886022-2123445446789999999999999726111575