11 c3lr1A_ Probab=99.65   E-value=1.6e-15  Score=103.51  Aligned_columns=227  Identities=19%

Q ss_pred             CCCCEEEEEECCHHHH--HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEECCCCCCCHHHHCCCCE--EEEEE
Q ss_conf             5574489971013899--9999999998757967999806616899998738864101344488667413551--44457
Q batch____        24 FAEASLTGAGATFPAP--VYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGL--FQFPT   99 (346)
Q Consensus        24 ~a~~~i~~~GSt~~~p--~~~~~~~~~~~~~~~~i~~~~~GSg~Gi~~~~~g~~dia~ssr~l~~~e~~~~~~--~~~~i   99 (346)
                      .+..+|++++++++.+  +++.+++.|++++|++|.+..+||+.+++++.++.+|+..+..+...+++....+  ...++
T Consensus         1 ~a~~~l~~~~~~s~~~~~~~~~i~~~Fe~~~gi~V~~~~~~S~~l~~~l~~~~aDi~~~~~~~~~~~l~~~~~~~~~~~~   80 (232)
T c3lr1A_           1 NAEERLKXSTTTSTQDSGLLKVLLPPFEKKNNVKVDVIAVGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDV   80 (232)
T ss_dssp             CCSCEEEEEEEHHHHHHCHHHHHHHHHHHHHTCEEEEEEECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCEEE
T ss_conf             93101365454045435689999999998749779999678289999984377859995696789999852276870464


Q ss_pred             EEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCH
Q ss_conf             73004799825777766322799999787439541367720002477889886636998379888679999999630350
Q batch____       100 VIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNE  179 (346)
Q Consensus       100 a~~~i~i~v~~~~~~~~~~~Lt~~ql~~If~G~it~W~d~~~~~~n~~~~~p~~~I~v~~R~~~SGT~~~F~~~l~~~~~  179 (346)
                      ..+.++|+||   ..++....+.++|.+++...+..+..                  +..|...+++...+.....    
T Consensus        81 ~~~~~~i~~~---~~~~~~~~~~~dL~~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~----  135 (232)
T c3lr1A_          81 XYNDFVIVGP---KNDPAGIAKAKTAAEALKLLATKGAT------------------FISRGDKSGTHTKELDLWK----  135 (232)
T ss_dssp             EECCEEEEEC---TTCTTCGGGCSSHHHHHHHHHHHTCC------------------EEECCSSSHHHHHHHHHHH----
T ss_pred             ECCCEEEEEE---CCCCCCCCCHHHHHHHHHCCCCCCCC------------------CCCCCCHHHHHHHHHHHHH----
T ss_conf             3065799970---76777889988975233112225766------------------5554105899999866787----


Q ss_pred             HHHCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCEEEEEHHHHHCCCCCEEEEEECCCCEEECCHHHHHHHHCCCCCC
Q ss_conf             00001245655555530102560789999753898137730012100278303564056652412667865431013445
Q batch____       180 EWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWS  259 (346)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~~gaIGY~~~~~~~~~~~~~~~i~~~~g~~v~Pt~~~i~~a~~~~~~~  259 (346)
                              .................+...+......+++....+....     ......+..+.|.....          
T Consensus       136 --------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----------  192 (232)
T c3lr1A_         136 --------SAGVDPKGNWYVEAGQGXGPVITXATERRAYTLTDRGTYN-----AFKGAKTDLVILFQGLF----------  192 (232)
T ss_dssp             --------HTTCCCCSSSEEECCSCHHHHHHHHHHHTCEEEEEHHHHH-----HHBTTTBCCEEEEECCC----------
T ss_pred             --------HCCCCCCCCEEECCCHHHHHHHHCCCCCCEEEEECCHHHH-----HCCCCCCCCCCCCCCCC----------
T ss_conf             --------4032211111202201166664303444024531100111-----01235653101575655----------


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH-HHHHHHHHC
Q ss_conf             454444345678998840124799982688881135999999999961-089999976
Q batch____       260 KTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYK-TGAKQANDL  316 (346)
Q Consensus       260 ~~~~~~~~~~~~~g~YPl~~~~y~~~~~~~~~~~~~~~v~~Fl~~~ls-egq~~~~~~  316 (346)
                                   +.||+.     .+....++....++.++|++|++| |||++++++
T Consensus       193 -------------~~~~~~-----~~~~~~~~~~~~~~A~~FidfllS~egQ~il~~y  232 (232)
T c3lr1A_         193 -------------NPYGIX-----AVNPKKFPHVKYDLAXKLIDYVTGPEGLKIISDY  232 (232)
T ss_dssp             -------------EEEEEE-----EECTTTCTTSCHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred             -------------CCCCHH-----HHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf             -------------542001-----1111015777856789999987499999997519