BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (83 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AB63 Protein yciN n=209 Tax=cellular organisms RepID=... 172 3e-42 UniRef50_D1NYM1 Protein YciN n=2 Tax=Providencia RepID=D1NYM1_9ENTR 92 4e-18 UniRef50_D0IBD1 Protein YciN n=1 Tax=Grimontia hollisae CIP 1018... 90 2e-17 UniRef50_Q5E601 Protein YciN n=9 Tax=Vibrionales RepID=Q5E601_VIBF1 87 2e-16 >UniRef50_P0AB63 Protein yciN n=209 Tax=cellular organisms RepID=YCIN_ECO57 Length = 83 Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK 60 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK Sbjct: 1 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK 60 Query: 61 STAVFNMFKHLAHVLSEKYHLVD 83 STAVFNMFKHLAHVLSEKYHLVD Sbjct: 61 STAVFNMFKHLAHVLSEKYHLVD 83 >UniRef50_D1NYM1 Protein YciN n=2 Tax=Providencia RepID=D1NYM1_9ENTR Length = 85 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 58/83 (69%) Query: 1 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK 60 M+ E Q I ++ LL++AN II+ H+D + G+ V Q + VLVF G++FLDE G+P+ K Sbjct: 1 MSNEIQYISKQELLEKANDIIKNHDDYIHGMFVDNVEQHSDVLVFKGEFFLDENGIPSFK 60 Query: 61 STAVFNMFKHLAHVLSEKYHLVD 83 S A FNM+KHL H+ SEKY L D Sbjct: 61 SAAAFNMYKHLTHLFSEKYRLND 83 >UniRef50_D0IBD1 Protein YciN n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IBD1_VIBHO Length = 94 Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/78 (56%), Positives = 57/78 (73%) Query: 4 ETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTA 63 E I E LLK AN++IREH+ + G+ A V ++ GV+VF G+YFLD GLPT K+TA Sbjct: 15 EKTSICAEDLLKIANQMIREHDAYIDGMHADSVEEKAGVMVFKGEYFLDGNGLPTPKTTA 74 Query: 64 VFNMFKHLAHVLSEKYHL 81 VFNMFK+LAH LS++Y L Sbjct: 75 VFNMFKYLAHHLSKQYTL 92 >UniRef50_Q5E601 Protein YciN n=9 Tax=Vibrionales RepID=Q5E601_VIBF1 Length = 81 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 41/76 (53%), Positives = 58/76 (76%) Query: 4 ETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTA 63 + + I LL AN+II++HE+ L G+ AT V +++ VLVF G+YFL +QGLPT K+TA Sbjct: 3 DKKSISEADLLLIANQIIQDHENYLEGMRATSVEEKDEVLVFKGEYFLSDQGLPTEKTTA 62 Query: 64 VFNMFKHLAHVLSEKY 79 VFNMFK+LAH LS+++ Sbjct: 63 VFNMFKYLAHHLSKEF 78 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AB63 Protein yciN n=209 Tax=cellular organisms RepID=... 127 1e-28 UniRef50_D0IBD1 Protein YciN n=1 Tax=Grimontia hollisae CIP 1018... 125 5e-28 UniRef50_D1NYM1 Protein YciN n=2 Tax=Providencia RepID=D1NYM1_9ENTR 120 1e-26 UniRef50_Q5E601 Protein YciN n=9 Tax=Vibrionales RepID=Q5E601_VIBF1 112 3e-24 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0AB63 Protein yciN n=209 Tax=cellular organisms RepID=YCIN_ECO57 Length = 83 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK 60 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK Sbjct: 1 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK 60 Query: 61 STAVFNMFKHLAHVLSEKYHLVD 83 STAVFNMFKHLAHVLSEKYHLVD Sbjct: 61 STAVFNMFKHLAHVLSEKYHLVD 83 >UniRef50_D0IBD1 Protein YciN n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IBD1_VIBHO Length = 94 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 57/78 (73%) Query: 4 ETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTA 63 E I E LLK AN++IREH+ + G+ A V ++ GV+VF G+YFLD GLPT K+TA Sbjct: 15 EKTSICAEDLLKIANQMIREHDAYIDGMHADSVEEKAGVMVFKGEYFLDGNGLPTPKTTA 74 Query: 64 VFNMFKHLAHVLSEKYHL 81 VFNMFK+LAH LS++Y L Sbjct: 75 VFNMFKYLAHHLSKQYTL 92 >UniRef50_D1NYM1 Protein YciN n=2 Tax=Providencia RepID=D1NYM1_9ENTR Length = 85 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 42/83 (50%), Positives = 58/83 (69%) Query: 1 MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAK 60 M+ E Q I ++ LL++AN II+ H+D + G+ V Q + VLVF G++FLDE G+P+ K Sbjct: 1 MSNEIQYISKQELLEKANDIIKNHDDYIHGMFVDNVEQHSDVLVFKGEFFLDENGIPSFK 60 Query: 61 STAVFNMFKHLAHVLSEKYHLVD 83 S A FNM+KHL H+ SEKY L D Sbjct: 61 SAAAFNMYKHLTHLFSEKYRLND 83 >UniRef50_Q5E601 Protein YciN n=9 Tax=Vibrionales RepID=Q5E601_VIBF1 Length = 81 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 41/79 (51%), Positives = 59/79 (74%) Query: 3 KETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKST 62 + + I LL AN+II++HE+ L G+ AT V +++ VLVF G+YFL +QGLPT K+T Sbjct: 2 SDKKSISEADLLLIANQIIQDHENYLEGMRATSVEEKDEVLVFKGEYFLSDQGLPTEKTT 61 Query: 63 AVFNMFKHLAHVLSEKYHL 81 AVFNMFK+LAH LS+++ + Sbjct: 62 AVFNMFKYLAHHLSKEFTV 80 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.139 0.363 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 304,547,379 Number of Sequences: 3077464 Number of extensions: 10405014 Number of successful extensions: 28073 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28065 Number of HSP's gapped (non-prelim): 8 length of query: 83 length of database: 1,040,396,356 effective HSP length: 53 effective length of query: 30 effective length of database: 877,290,764 effective search space: 26318722920 effective search space used: 26318722920 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 87 (38.1 bits)