BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1122 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P07648 Exodeoxyribonuclease V gamma chain n=185 Tax=cel... 2295 0.0 UniRef50_C4K849 Exonuclease V, gamma chain with recB and recD: 5... 1245 0.0 UniRef50_Q1LST9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ba... 993 0.0 UniRef50_D0ICS0 Exodeoxyribonuclease V gamma chain n=1 Tax=Grimo... 954 0.0 UniRef50_C9PLM5 Exodeoxyribonuclease V gamma chain n=5 Tax=Gamma... 932 0.0 UniRef50_A6FE97 Putative exodeoxyribonuclease V n=1 Tax=Moritell... 900 0.0 UniRef50_B6EGE9 Exodeoxyribonuclease V gamma chain n=1 Tax=Aliiv... 887 0.0 UniRef50_Q2BKD9 Exodeoxyribonuclease V, 125 kDa subunit n=2 Tax=... 852 0.0 UniRef50_A1SUW0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ps... 848 0.0 UniRef50_C4L7B2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=To... 818 0.0 UniRef50_A4SSU8 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ae... 814 0.0 UniRef50_Q65UM5 RecC protein n=9 Tax=Gammaproteobacteria RepID=Q... 757 0.0 UniRef50_Q9CM76 RecC n=1 Tax=Pasteurella multocida RepID=Q9CM76_... 749 0.0 UniRef50_A6W0B0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ma... 736 0.0 UniRef50_Q7VRF1 Exonuclease V, subunit n=2 Tax=Candidatus Blochm... 709 0.0 UniRef50_A6VQ90 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ac... 682 0.0 UniRef50_Q3IJ13 Exonuclease V, gamma chain with recB and recD: 5... 672 0.0 UniRef50_A1S6U9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Sh... 670 0.0 UniRef50_P44945 Exodeoxyribonuclease V gamma chain n=21 Tax=Haem... 669 0.0 UniRef50_B8CMV5 Exodeoxyribonuclease V, RecC subunit n=1 Tax=She... 657 0.0 UniRef50_Q15V11 DNA helicase/exodeoxyribonuclease V, gamma subun... 655 0.0 UniRef50_A5GC93 DNA helicase/exodeoxyribonuclease V, gamma subun... 653 0.0 UniRef50_A3QEU7 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Sh... 651 0.0 UniRef50_B8E565 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Sh... 636 e-180 UniRef50_B0BTG3 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Pa... 625 e-177 UniRef50_B9CWC7 Exodeoxyribonuclease V gamma chain n=2 Tax=Actin... 623 e-176 UniRef50_Q080D9 Exodeoxyribonuclease V, gamma subunit n=6 Tax=Sh... 618 e-175 UniRef50_Q12LP5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ba... 616 e-174 UniRef50_Q3ASJ4 DNA helicase/exodeoxyribonuclease V, gamma subun... 615 e-174 UniRef50_Q7NQR0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ch... 613 e-173 UniRef50_A1AQY6 DNA helicase/exodeoxyribonuclease V, gamma subun... 607 e-172 UniRef50_C1DMH2 Exodeoxyribonuclease V, gamma subunit n=18 Tax=G... 607 e-172 UniRef50_C0N788 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Me... 600 e-169 UniRef50_Q2LTC9 Exodeoxyribonuclease V gamma chain n=2 Tax=Bacte... 598 e-169 UniRef50_Q3B473 DNA helicase/exodeoxyribonuclease V, gamma subun... 591 e-167 UniRef50_A1TWK1 DNA helicase/exodeoxyribonuclease V, gamma subun... 587 e-166 UniRef50_D2BZV3 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ga... 585 e-165 UniRef50_Q0VNI2 Exodeoxyribonuclease V gamma chain n=3 Tax=Gamma... 578 e-163 UniRef50_A4VRQ6 Exodeoxyribonuclease V gamma chain n=1 Tax=Pseud... 578 e-163 UniRef50_C5S7Q0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Al... 574 e-162 UniRef50_A8ZX08 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 573 e-161 UniRef50_P57528 Exodeoxyribonuclease V gamma chain n=4 Tax=Buchn... 571 e-161 UniRef50_A4JS85 DNA helicase/exodeoxyribonuclease V, gamma subun... 568 e-160 UniRef50_Q2SQD5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ha... 558 e-157 UniRef50_A3JIN1 Exodeoxyribonuclease V gamma chain n=2 Tax=cellu... 555 e-156 UniRef50_C1D6T7 RecC n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 552 e-155 UniRef50_C5JAU6 DNA helicase/exodeoxyribonuclease V, gamma subun... 552 e-155 UniRef50_Q5QUQ7 Exonuclease V gamma subunit n=2 Tax=Idiomarina R... 548 e-154 UniRef50_C0QI08 RecC n=1 Tax=Desulfobacterium autotrophicum HRM2... 545 e-153 UniRef50_B5JRL4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=ga... 532 e-149 UniRef50_Q1QYD4 DNA helicase/exodeoxyribonuclease V, gamma subun... 526 e-147 UniRef50_Q1N2R1 Exonuclease V gamma subunit n=1 Tax=Bermanella m... 524 e-147 UniRef50_B8FB93 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 523 e-146 UniRef50_C7I4N7 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Th... 514 e-144 UniRef50_D0KY94 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ha... 511 e-143 UniRef50_Q8D2T9 RecC protein n=1 Tax=Wigglesworthia glossinidia ... 502 e-140 UniRef50_Q480N8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Co... 497 e-138 UniRef50_C8R0F3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 494 e-138 UniRef50_C7LVF8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 488 e-136 UniRef50_A1KVC5 Exodeoxyribonuclease V n=23 Tax=Neisseria RepID=... 469 e-130 UniRef50_C6MAC3 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Ne... 460 e-127 UniRef50_Q89AB4 Exodeoxyribonuclease V gamma chain n=1 Tax=Buchn... 452 e-125 UniRef50_B1XZ24 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 444 e-122 UniRef50_A4B914 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Re... 444 e-122 UniRef50_D0IXL5 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Co... 443 e-122 UniRef50_C5TL47 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Ne... 441 e-122 UniRef50_B5EPU5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ac... 439 e-121 UniRef50_C4ZM87 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Th... 434 e-120 UniRef50_D1N1Q2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Vi... 426 e-117 UniRef50_B4RTM0 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Al... 425 e-117 UniRef50_C4GHY2 Putative uncharacterized protein n=1 Tax=Kingell... 421 e-115 UniRef50_Q1NSB7 Exodeoxyribonuclease V, RecC subunit n=3 Tax=Pro... 419 e-115 UniRef50_Q60AZ6 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Me... 416 e-114 UniRef50_A6DNF3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 408 e-112 UniRef50_UPI0000E0F593 exodeoxyribonuclease V, gamma subunit n=1... 403 e-110 UniRef50_B0TXZ0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Fr... 402 e-110 UniRef50_Q14GK3 Exodeoxyribonuclease V gamma chain n=16 Tax=Fran... 398 e-109 UniRef50_A1KCB8 DNA helicase, ATP-dependent dsDNA/ssDNA exonucle... 396 e-108 UniRef50_Q3BM39 Exodeoxyribonuclease V, gamma chain n=19 Tax=Xan... 396 e-108 UniRef50_D2U882 Probable exodeoxyribonuclease v, gamma chain pro... 389 e-106 UniRef50_Q6ANK2 Related to exodeoxyribonuclease V, gamma chain n... 388 e-106 UniRef50_C1ACJ2 Exodeoxyribonuclease V gamma subunit n=1 Tax=Gem... 387 e-105 UniRef50_C1SHH5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 385 e-105 UniRef50_A1V2S0 Exodeoxyribonuclease V, gamma subunit n=90 Tax=c... 378 e-103 UniRef50_C3X2X1 Exodeoxyribonuclease V n=2 Tax=Oxalobacter formi... 376 e-102 UniRef50_A1SDB1 DNA helicase/exodeoxyribonuclease V, gamma subun... 374 e-101 UniRef50_C6NU56 Exodeoxyribonuclease V gamma chain n=1 Tax=Acidi... 374 e-101 UniRef50_Q9RNX7 RecC1001 (Fragment) n=71 Tax=Bacteria RepID=Q9RN... 367 1e-99 UniRef50_C6HV34 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 360 3e-97 UniRef50_UPI0001C32181 exodeoxyribonuclease V, gamma subunit n=1... 357 2e-96 UniRef50_C7PDT3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ch... 353 3e-95 UniRef50_P96921 Exodeoxyribonuclease V gamma chain n=23 Tax=Myco... 333 2e-89 UniRef50_B5JHV1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ve... 332 5e-89 UniRef50_D2PR48 Exodeoxyribonuclease V, gamma subunit n=12 Tax=A... 326 3e-87 UniRef50_C0ZQ87 Exodeoxyribonuclease V gamma chain n=6 Tax=Coryn... 323 3e-86 UniRef50_C8XGX0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Na... 318 6e-85 UniRef50_D0L8X4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Go... 288 6e-76 UniRef50_C8SXN2 Exodeoxyribonuclease subunit V gamma (Fragment) ... 258 1e-66 UniRef50_Q6FF17 Exonuclease V, gamma chain n=3 Tax=Acinetobacter... 253 3e-65 UniRef50_A6W6P1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ki... 250 2e-64 UniRef50_A5GU99 Exodeoxyribonuclease V gamma chain n=1 Tax=Synec... 248 1e-63 UniRef50_A3ETY6 Putative exodeoxyribonuclease V, gamma subunit n... 247 2e-63 UniRef50_B2I2P5 Exonuclease V gamma subunit n=14 Tax=Acinetobact... 242 5e-62 UniRef50_D0SSR5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ac... 232 6e-59 UniRef50_A5GLW8 Exodeoxyribonuclease V gamma chain n=4 Tax=Synec... 231 9e-59 UniRef50_A7BX05 Exodeoxyribonuclease V gamma chain n=1 Tax=Beggi... 231 1e-58 UniRef50_Q7VBK2 Exonuclease V gamma subunit n=1 Tax=Prochlorococ... 228 1e-57 UniRef50_A9BB00 Possible exodeoxyribonuclease V subunit C 125 kD... 224 1e-56 UniRef50_Q3AJ30 Exodeoxyribonuclease V, gamma subunit n=5 Tax=Sy... 224 1e-56 UniRef50_Q6MFB7 Putative exodeoxyribonuclease V gamma chain n=1 ... 222 6e-56 UniRef50_D1R7X4 Putative uncharacterized protein n=1 Tax=Parachl... 222 7e-56 UniRef50_A2C3H2 Possible exodeoxyribonuclease V subunit C 125 kD... 213 4e-53 UniRef50_Q05XZ7 Possible exodeoxyribonuclease V gamma chain n=1 ... 213 4e-53 UniRef50_A2C8A0 Possible exodeoxyribonuclease V gamma chain n=4 ... 213 5e-53 UniRef50_A5EWC3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Di... 194 2e-47 UniRef50_D0LXX8 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 182 4e-44 UniRef50_Q4FSM9 Possible exoribodeoxynuclease V, gamma subunit n... 163 5e-38 UniRef50_UPI0001699EF8 Exodeoxyribonuclease V, RecC subunit n=1 ... 156 4e-36 UniRef50_Q057F6 Exodeoxyribonuclease V, g chain n=1 Tax=Buchnera... 138 1e-30 UniRef50_C8NCI0 Exoribodeoxynuclease V, gamma subunit n=1 Tax=Ca... 130 3e-28 UniRef50_C9RQA7 Exodeoxyribonuclease V RecC subunit n=1 Tax=Fibr... 130 4e-28 UniRef50_C8PVF1 Putative exoribodeoxynuclease V, gamma subunit n... 125 7e-27 UniRef50_A2BX92 Possible exodeoxyribonuclease V subunit C 125 kD... 124 2e-26 UniRef50_C1RHS2 Exonuclease V gamma subunit n=1 Tax=Cellulomonas... 115 1e-23 UniRef50_Q6A851 Exodeoxyribonuclease V gamma chain n=3 Tax=Propi... 102 1e-19 UniRef50_Q04UR0 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Le... 99 8e-19 UniRef50_B0SIS7 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Le... 75 2e-11 UniRef50_A2PDE9 Putative uncharacterized protein (Fragment) n=1 ... 64 4e-08 UniRef50_Q8ERW6 ATP-dependent helicase/deoxyribonuclease subunit... 59 1e-06 UniRef50_A4J4E2 ATP-dependent helicase/deoxyribonuclease subunit... 52 2e-04 UniRef50_B7J2J0 Exodeoxyribonuclease V, gamma chain n=26 Tax=Bor... 49 0.001 UniRef50_D1BPP0 ATP-dependent nuclease subunit B-like protein n=... 48 0.002 UniRef50_B5E4P4 ATP-dependent helicase/deoxyribonuclease subunit... 48 0.002 UniRef50_B6G1B7 Putative uncharacterized protein n=1 Tax=Clostri... 48 0.002 UniRef50_Q9RNX8 RecC73 (Fragment) n=1 Tax=Escherichia coli RepID... 48 0.002 UniRef50_Q24WW7 ATP-dependent helicase/deoxyribonuclease subunit... 47 0.004 UniRef50_Q0AXV2 DNA helicase/exodeoxyribonuclease V, subunit B n... 45 0.017 UniRef50_C8W206 ATP-dependent DNA helicase PcrA n=2 Tax=Clostrid... 45 0.021 UniRef50_Q04T79 ATP-dependent DNA helicase n=6 Tax=Leptospira Re... 45 0.024 UniRef50_Q3DPK7 Exonuclease RexB (Fragment) n=3 Tax=Streptococcu... 44 0.031 UniRef50_A3CVM8 ATP-dependent nuclease subunit B-like protein n=... 44 0.034 UniRef50_Q038V6 ATP-dependent helicase/deoxyribonuclease subunit... 44 0.047 >UniRef50_P07648 Exodeoxyribonuclease V gamma chain n=185 Tax=cellular organisms RepID=EX5C_ECOLI Length = 1122 Score = 2295 bits (5947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1122/1122 (100%), Positives = 1122/1122 (100%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI Sbjct: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD Sbjct: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG Sbjct: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF Sbjct: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL Sbjct: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR Sbjct: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP Sbjct: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA Sbjct: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA Sbjct: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL Sbjct: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN Sbjct: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL Sbjct: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL Sbjct: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 Query: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF Sbjct: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR Sbjct: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ 960 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ Sbjct: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ 960 Query: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL Sbjct: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 Query: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM Sbjct: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 Query: 1081 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS Sbjct: 1081 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 >UniRef50_C4K849 Exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K849_HAMD5 Length = 1123 Score = 1245 bits (3221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 621/1137 (54%), Positives = 803/1137 (70%), Gaps = 45/1137 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M YHSN+LD+L+ L ++E+E L +PF+ E+ILVQS GMAQWLQ+ L+Q GI+ANI Sbjct: 1 MFITYHSNQLDLLKTLTSTLIEKEPLKNPFQKEIILVQSPGMAQWLQIQLAQSLGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPA+FIWDMF +VL IPKES FNK +M+WKLM LLP LL+ F ++HYL DD D Sbjct: 61 QFPLPATFIWDMFTKVLKNIPKESPFNKDAMTWKLMCLLPDLLQNPIFASIKHYLQDDED 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K+K+ QL+ + ADLFDQYLVYR +WL WE G + L + Q WQA LW +L+ Y+ QL Sbjct: 121 KQKIHQLAIRIADLFDQYLVYRSEWLDGWENGKKFDDLNKNQDWQAALWVSLIRYSRQLE 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 QP WHRA LYQRFI+ L LP RVFI GIS LPP+YL+ L+AL +H++IH +F Sbjct: 181 QPEWHRARLYQRFIQALNKNDVDSDLLPKRVFIFGISTLPPIYLKGLEALSRHMDIHFMF 240 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPCRY+WGDI++ LAKL + + L N + EQ NPLL Sbjct: 241 NNPCRYFWGDIQNYDILAKLNIKN-----------------TSSDLRNIEEEQI--NPLL 281 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 ASWG+LGRD++YLLS +E QE+ AFVD+ PDNLLH +Q D+LE +N+A + E S Sbjct: 282 ASWGRLGRDHLYLLSQIEGLQEIHAFVDIEPDNLLHALQHDMLEFKNQATRHFS-ESNSH 340 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + KR LD D SI H CHS QREVE+L D+LL + EDP LTPRD+IVMVADID+Y+P Sbjct: 341 HNKKRLLDINDRSIGVHSCHSQQREVEILQDQLLNLFSEDPALTPRDVIVMVADIDNYAP 400 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +IQAVF +A +RYLP+AISDR+ Q HPVL+ FI LL LP SRF SE VL LL++ L+ Sbjct: 401 YIQAVFSNASLERYLPFAISDRKMTQVHPVLQTFIKLLDLPQSRFSSEQVLGLLEISALS 460 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 +F+I E+ L LR+WV SGIRWG+D++NV++L LP TGQHTW+FGL RM LGYAM+S Sbjct: 461 QKFEIQEKELSLLREWVEGSGIRWGLDNENVQDLSLPITGQHTWQFGLKRMFLGYAMDSQ 520 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 G+W+ VLPYDES+GL AEL+G LA LLM L+IWR+ L R L EWLP+CRD+ AFF Sbjct: 521 AGDWEGVLPYDESTGLAAELIGKLARLLMMLSIWRKKLKTSRLLSEWLPLCRDLFYAFFE 580 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 +AETE+ LI+QQWQ II GL AQY + VP+SL+R +L R + +RISQRFLAGP+N Sbjct: 581 SNAETESIFILIDQQWQNIIQYGLSAQYANTVPVSLIRHDLVTRFENQRISQRFLAGPIN 640 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 CTLMPMRSIPFKVVCLLGMN+G+YPR L PLGFDLM++K ++GDRSRRDDDRYLFLEAL Sbjct: 641 FCTLMPMRSIPFKVVCLLGMNEGIYPRILPPLGFDLMAKKRQKGDRSRRDDDRYLFLEAL 700 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 +SAQQ LYISYIGRSIQDNS+R+PSVLV EL++YIG S+ LPGDE N DES ARV HL Sbjct: 701 LSAQQYLYISYIGRSIQDNSQRYPSVLVSELLEYIGNSYVLPGDENRNSDESMARVIQHL 760 Query: 781 TCLHTRMPFDPQNYQPG-ERQSYAREWLPAASQAGKAHSE----FVQPL---PFTLPETV 832 HTRMPF +N+ G E+QSYA EWL AA + + + F++PL PF+ + Sbjct: 761 LFCHTRMPFSAKNFIKGTEQQSYAIEWLEAAKKHTQEQKQPQDDFIKPLVSEPFS---EI 817 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 L+ L F+ HP++AFFQ+RL V FR E E+ + EPFIL L+RYQ N +LLNAL+EQ Sbjct: 818 TLDELINFYRHPIKAFFQLRLGVQFRVEQKELSNEEPFILAPLARYQFNTELLNALIEQK 877 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA-------CRQPGQSMEIDL 945 + ++L+ R +A+G LP+G FGEI+W+ Q EM +A ++ CR +E++ Sbjct: 878 NVDQLYARMQASGRLPFGHFGEIYWQQQKNEMGLIAKKIQTETGHTEFCR-----LEVNT 932 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGE 1005 ++GW+ Q DGL+RWRPS L++ G+ LW+EHL YC SGG GESR++ +K+ Sbjct: 933 TLGERTLSGWIAHAQTDGLIRWRPSTLTIVDGLLLWIEHLAYCLSGGKGESRIYGKKESV 992 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 WRF L+ +A +LS IEGY++GM PLL+L SG AWL CYD +N +L D+ T Sbjct: 993 WRFSALSQSEAEQHLSLFIEGYQKGMIQPLLLLNHSGWAWLTKCYDLKNRHILWDEKTQA 1052 Query: 1066 KARTKFLQAYEGN--MMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFN 1120 KA+ L ++GN VRGEGDD + QRL+R + ++ I+++++ +LLP+ N Sbjct: 1053 KAKDHLLTVFQGNPKTGVRGEGDDPYIQRLFRSINDTHVDRILQEAKNYLLPIAHHN 1109 >UniRef50_Q1LST9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LST9_BAUCH Length = 1098 Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/1132 (44%), Positives = 717/1132 (63%), Gaps = 51/1132 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SN+LDV+ +++ ++ +L + +PE+ILVQ+ + QWLQ+ L+ GIAANI Sbjct: 1 MFTIYQSNKLDVITSILISLISERKLRETLQPEIILVQNHNITQWLQVELAMSLGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F P FI+ + +LPE+ E F++ +SWK+ +LP ++ + +L+R YL +D D Sbjct: 61 RFSTPTIFIYKLLSSILPEMNLEMFFSRSLISWKIRLILPHFYDQPNCSLIRQYLHNDVD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 KRK F LS K ADLF QY +YRPDWL W+ G V LG Q WQA LW+AL+E Sbjct: 121 KRKQFHLSEKIADLFYQYFLYRPDWLEIWQQGKRVASLGPDQNWQALLWRALIE------ 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 NLYQ FI+ ++ T P GLP R+FI +S+LPP+YLQ LQAL HI+IH + Sbjct: 175 -ENMLSTNLYQLFIQAMKHMTVRPSGLPDRIFIYAVSSLPPIYLQVLQALSNHIDIHFML 233 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NP R+ R + S+ + + ++++ Q NPLL Sbjct: 234 VNPYRF---------------NRINKQSYTQQPI------------YSTNTNQKSINPLL 266 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 WGK G+D I LLS+L++ Q++DAFV+++ + +S + L+ + + Sbjct: 267 EYWGKQGKDTISLLSELKNIQKIDAFVELSQE------KSLLSLLQLDILEDNIVCHLHN 320 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + KR L D S++ +VCHSPQRE+EVLHD +LAM+ ++ +L P +IIVMV DI+ Y P Sbjct: 321 AKVKRLLQHNDHSLSINVCHSPQREIEVLHDAILAMIAQEQSLLPCEIIVMVTDINLYIP 380 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 I+AVFG+A DRYLP+ I DR + ++PVL F+ LL LP SR E+VL+LLD VLA Sbjct: 381 AIKAVFGNATTDRYLPFTIYDRTVKHTNPVLSVFLRLLKLPFSRLTIEEVLSLLDTSVLA 440 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 F I++ L LR+W+ ESGIRWG+DDD R+L LP T QHTW FGL RMLLGYA++S+ Sbjct: 441 KHFSISQIDLTILRKWIVESGIRWGLDDDTQRDLMLPTTSQHTWEFGLNRMLLGYAIDSS 500 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 G WQ +LPYDESSG AEL+G+LA L+M+L WR+ L + R L EWL DM+ FF+ Sbjct: 501 NGIWQGILPYDESSGKRAELIGNLAELIMRLRRWRKNLKKPRKLTEWLHCASDMIKDFFV 560 Query: 601 PDA--ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 + E E A+ +I QWQ I+ G+ A Y V ++ L DEL RL Q+ ++Q F++ Sbjct: 561 TNVNKEVETALVIILDQWQQILQCGIKANYDQPVSIARLYDELNMRLQQKHLNQSFISSN 620 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 + CT+MP SIPFKV+CLLGMNDG+YP + PL FDLM Q+P+RGD +R D+DRY+FLE Sbjct: 621 IIFCTIMPTSSIPFKVICLLGMNDGIYPHSILPLNFDLMKQQPRRGDYNRYDEDRYIFLE 680 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 L+SAQQKLYIS+IG IQDN+ R PS+L+ EL +YI Q+ YL GDE L+ ++ Sbjct: 681 LLLSAQQKLYISFIGYFIQDNTLRSPSILISELTNYITQNFYLSGDEQLDEHTCNLHIRK 740 Query: 779 HLTCLHTRMPFDPQNYQPGE-RQSYAREWLPAASQAGKAHSE----FVQPLPFTLPE--T 831 HL H+RMPF P+N+ PG QS+A+EWL AA + ++++ F+ T + Sbjct: 741 HLWQWHSRMPFAPENFIPGSINQSFAKEWLLAAKASFRSNNTQNRFFMNKSLATKKQENM 800 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ 891 + L L++F+ HPVR +FQ RL + E +I + EPFI++G+S Y+I +++LNAL+E Sbjct: 801 LLLANLKKFYQHPVRTWFQQRLDLWLYNEPQDISENEPFIVKGISHYKIKEKILNALIEG 860 Query: 892 DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSME-IDLACNGV 950 + + ++++ RAAG L YGAFG+++W QC +M L D++ P Q E I L + Sbjct: 861 KNLDVIYQQVRAAGLLAYGAFGKLYWTKQCSKMIYLVDQIRTYILPEQHTEKIQLNIDNT 920 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPP 1010 + GWL ++Q +GL+RW P LS+ G+QLW+EHL YCA GGNG+SR+F + +W FP Sbjct: 921 VLIGWLSKIQCNGLVRWYPHNLSMKHGLQLWIEHLAYCAIGGNGQSRMF-GTNSQWCFPV 979 Query: 1011 LAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTK 1070 L++++A YL LI+GY +GMS PLL+L SGGAWL C++ + + + + AR Sbjct: 980 LSSDEAKKYLLTLIKGYWQGMSEPLLLLNRSGGAWLTHCFNKKTRMINWEKDCQRTARNY 1039 Query: 1071 FLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 ++A+EGN + GE D++ Q+L QL + AI++ + + LP +FN S Sbjct: 1040 MIKAWEGNHLFPGESSDLYLQKLILQLNENYIIAIIKAVECYFLPPLKFNIS 1091 >UniRef50_D0ICS0 Exodeoxyribonuclease V gamma chain n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0ICS0_VIBHO Length = 1131 Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/1138 (46%), Positives = 724/1138 (63%), Gaps = 39/1138 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN+LD+L++L+ I++ + LD+PF+ E+ILVQS GMAQWL++ ++++ GIAAN+ Sbjct: 1 MFTVYHSNQLDLLKSLLVAIIQSKPLDNPFQKELILVQSPGMAQWLKLEMAKEQGIAANV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +FPLPA+FIW MF ++L ++P+ S FNK++M+WKLMT+LP+ L+ DF LR YL D D Sbjct: 61 EFPLPATFIWQMFTQILDDVPQRSFFNKEAMTWKLMTVLPEKLDEPDFDELRRYLDGDDD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 ++KL+QL+ K AD++DQYLVYRP+W+ WE V+ L E + WQA LW+AL +YT QLG Sbjct: 121 QQKLYQLAGKIADIYDQYLVYRPEWIKAWENEQPVDELAEEKRWQAVLWQALYDYTLQLG 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPS--RVFICGISALPPVYLQALQALGKHIEIHL 238 Q +HRANLY+ FI+ L S P GL RVF+ GISALPP YL AL+ALG+HI++H Sbjct: 181 QSPFHRANLYEEFIDVLSSHKEKPEGLQGIDRVFVFGISALPPRYLDALKALGEHIDVHY 240 Query: 239 LFTNPCRYYWGDIKDPAYLAK----LLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 +FTNPCRYYWGDI+D YLAK + R R S D E P ++ A L D + Sbjct: 241 MFTNPCRYYWGDIRDKRYLAKRAASMAPRISRAS--DTEEP----AQFALPLMGEDDTAE 294 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVN 354 VGN LLAS GKLGRD + L+S+L+ + FV+V D+LLH+IQ+DIL+L V N Sbjct: 295 VGNSLLASMGKLGRDNLLLISELQCHEVDQGFVEVPRDSLLHHIQADILDL----VEPEN 350 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 I+E S++K P+ D S+ VCHSP REVEVLHDRLL MLE DPTL+PRDIIVMVAD Sbjct: 351 IQETLTSESKLPVSADDRSLMVEVCHSPMREVEVLHDRLLDMLESDPTLSPRDIIVMVAD 410 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 I++YSP IQAVFG+AP +R++P++ISDR A Q P+L F+ LLSLPDSR + ++L +L Sbjct: 411 INAYSPAIQAVFGNAPGERFIPFSISDRTADQESPILTTFLRLLSLPDSRCSAAELLEIL 470 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 ++P + +F ++ WV E+GIRWG+DD+ LP Q+TW FGL RMLLG Sbjct: 471 ELPAVMRKFGFDNRQFEKVKLWVEEAGIRWGLDDNTASHFSLPHQHQNTWLFGLNRMLLG 530 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 YAM S+ G + VL YDE GL AEL G L + + + L + E W+ + Sbjct: 531 YAMPSSAGLYNDVLAYDEVQGLEAELAGKLGAFFRVMTATQTALLDTKNGEGWIQTLTSL 590 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 + F D + E A LI Q + + A + + L ++RD L ++L ER+SQRF Sbjct: 591 FDDMFALDTDEELAGQLIRTQLDNWLTQLDDAGFTQTLALPIVRDYLKEKLGGERVSQRF 650 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 LAG VN CTLMPMRSIPF+VVCLLGMNDG YPR +AP+GFDLM+ + + GDRSRRDDDRY Sbjct: 651 LAGQVNFCTLMPMRSIPFQVVCLLGMNDGDYPRTIAPVGFDLMAGRTRAGDRSRRDDDRY 710 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEAL SAQQ+LYISY+GRS+QDNSE+ PSVLV EL+DY Q + L GD++L ES Sbjct: 711 LFLEALQSAQQRLYISYVGRSVQDNSEKVPSVLVTELLDYCRQGYCLAGDQSLPEHESGQ 770 Query: 775 RVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF-----VQPLPFTLP 829 R+ L + +PF Q + R+SYA EWLPAA G A + F + P P Sbjct: 771 RLLGTLVHHNPLVPFSKQAFSQN-RRSYAAEWLPAARGEGHAAAPFLDGRALNPAPDLDI 829 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 + L LQRFW PV+ FF RL+V F + + + + EPF L+ L RYQ+ LL+ ++ Sbjct: 830 GVIELAELQRFWRLPVQYFFNRRLKVFFESPEGAMEEAEPFALDNLRRYQLRDALLSHVM 889 Query: 890 EQDDAE----RLFRRFRAAGDLPYGAFGEIFWETQ----CQEMQQLADRVIACRQPGQSM 941 + D+E F++ +A+G LP FGE+ E++ + Q+L + R Q++ Sbjct: 890 AKGDSEASLDAFFKQQKASGALPLSHFGELALESEQAGILAQYQRLKPMIADKR---QAL 946 Query: 942 EIDLAC----NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR 997 EI+L V++ GWL + G + +R + + W++HL CA+G ++ Sbjct: 947 EINLTLVTSRGTVKLQGWLDERYRAGRILYRSGKVRAQDRLSAWIDHLCQCAAGEALDT- 1005 Query: 998 LFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAM 1057 F+ D + + ++AE A+ L +E Y G APL LP + A L C D ++ Sbjct: 1006 CFIGVDEDVVWSAVSAESAITALVDYVEYYLAGTEAPLAFLPNTAMAGLSACID-KDGHW 1064 Query: 1058 LDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLP 1115 +DD T+ KAR+K A+EG MV GEG++ + R+W Q ++ + E + LLP Sbjct: 1065 SEDDVTMDKARSKMRAAFEGGYMVSGEGENTYIARVWPQADDALLDTVFELGKAVLLP 1122 >UniRef50_C9PLM5 Exodeoxyribonuclease V gamma chain n=5 Tax=Gammaproteobacteria RepID=C9PLM5_VIBFU Length = 1173 Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/1151 (45%), Positives = 725/1151 (62%), Gaps = 64/1151 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYH+N++D L+ L+ +++ + L +PFE E ILVQS GM+QWL+M L+Q+ G+AAN+ Sbjct: 1 MFTVYHANKVDTLKILLVHLIKNDPLANPFEKEQILVQSPGMSQWLKMALAQELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPA+FIW+MF +VLP +PK SAFNK++M+WKLM LLP L+++ F LR YL DD+D Sbjct: 61 DFPLPATFIWEMFTQVLPNVPKRSAFNKEAMTWKLMELLPSQLDQDVFAPLRRYLQDDTD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + KL+QL+ K AD+FD YLVYRPDW+A WE G V + WQ LWKAL +YT G Sbjct: 121 QSKLYQLAEKIADIFDGYLVYRPDWIAHWEAGESVAEIDGEHPWQPVLWKALYDYTLAQG 180 Query: 181 QPRWHRANLYQRFIETLESA-----TTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Q +HRANLYQ FI+ L LP R+FI GIS+LPP Y+ AL+ALG+HI+ Sbjct: 181 QSHYHRANLYQSFIDALAHIDLTHDEALRAALPKRLFIFGISSLPPRYMDALKALGEHID 240 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRR----------HSF--EDRELPLFRDSEN- 282 +HL+FTNPC++YWGDI+D YLA++ +++R+ H+F E PL + ++ Sbjct: 241 VHLMFTNPCQHYWGDIRDRKYLARVESQRRKQLVLHPNAETHTFTVEGEVSPLKGELDDY 300 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDI 342 AG ++ Q VGN LLAS GKLGRD +YLL+ ++E + F+DV D+LLH +Q+DI Sbjct: 301 AGDELHT--AQAVGNSLLASMGKLGRDNLYLLAQ-SDNEEHELFIDVPRDSLLHQLQADI 357 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 L LE + S +K L D S+T H CHSP REVEVLHD LLAM + DP Sbjct: 358 LHLEEHQDDTL----LDSSAHKPALPHGDRSLTLHACHSPMREVEVLHDELLAMFDRDPE 413 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 L PRDIIVMVADI++YSP+IQAVFG+AP +R++PY+ISDR A Q P+L AF+ L++LP Sbjct: 414 LKPRDIIVMVADINAYSPYIQAVFGNAPGERFIPYSISDRTADQESPILNAFMQLVALPQ 473 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 SR ++ ++L LL+ P + ARF + ++WV ESGIRWG++D +E ELP T Q+ Sbjct: 474 SRCLASELLELLETPAMMARFALDASEFDTAKRWVEESGIRWGLNDATAQEFELPQTHQN 533 Query: 523 TWRFGLTRMLLGYAMESAQGEWQS----VLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 TW+FG+ RMLLGYAM S+ G +++ + PY+E G+ AEL G LA + ++ +R+ L Sbjct: 534 TWQFGIARMLLGYAMPSSVGLFEAGGHAMAPYNEVQGMSAELAGKLAHFIDTISDYRQRL 593 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 AQ +P+E W + +L+ F D + E A+ I A+ + A Y DA+ +++ Sbjct: 594 AQTQPIEAWRELLSSLLDDCFSVDLDGEMALKSIRDTLAALKEQLADAGYADAISPAIMG 653 Query: 639 DELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS 698 L +L R+SQRFLAG VN CTLMPMRSIPF VVCLLGMNDGVYPR + P GFDLM+ Sbjct: 654 QYLHDKLSGTRVSQRFLAGQVNFCTLMPMRSIPFNVVCLLGMNDGVYPRSMPPEGFDLMN 713 Query: 699 QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 + + GDRSRRDDDRYLFLEA++SAQ LYISY+GRSIQDN+ER PSVLV EL++Y Q+ Sbjct: 714 GRTRPGDRSRRDDDRYLFLEAMLSAQHTLYISYVGRSIQDNTERVPSVLVTELLEYCQQN 773 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHS 818 + L GDEAL DES AR+ L H +PF PQ + + SYA+EWLPAA + G A Sbjct: 774 YCLAGDEALPSDESGARLIEQLQFTHAMVPFSPQAFLT-DVGSYAKEWLPAALRQGTASG 832 Query: 819 EFVQPL-PFTLPETVPLE----TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 F + L + L PLE LQRFW PV+ FF RL+V F + D EPF L Sbjct: 833 TFHRALDDYLLDAIYPLELDLVELQRFWRLPVQYFFNRRLKVVFEPPLPVMEDDEPFALG 892 Query: 874 GLSRYQINQQLLNALVEQDDAE-------RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQ 926 GL+ YQ+ LL+ L+ A+ + ++ RA G LP GAFGE+ +ET + ++ Sbjct: 893 GLASYQLRDALLDGLLNAPSAQARDEVLAQFNKQQRAQGKLPVGAFGELEFETNRVQAEE 952 Query: 927 LADRV-IACRQPGQSMEIDLACNG------VQITGWLPQVQPDGLLRWRPSLLSVAQGMQ 979 L ++V C+ P ++++L V ++GWL + GL+R+R + + Sbjct: 953 LVEKVQFLCQAPLDDLDVNLTLTALGQSRPVHLSGWLTRRYQSGLVRYRSGAIRSEDMLA 1012 Query: 980 LWLEHLVYCASGGNGESRL--FLRKDG--EWRFPPLAAEQALHY------LSQLIEGYRE 1029 W++HL ASG N + + + RKDG PPL A + L++L Y + Sbjct: 1013 AWIDHLAAAASGANLITHVIGYDRKDGVVHQVLPPLNANASESAALALAQLNELARLYYQ 1072 Query: 1030 GMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIW 1089 GM+APL P++ A ++ + +DD+ +K+ K + + M GEG++ + Sbjct: 1073 GMTAPLAYFPKTALASVEAGF--SRGQWVDDE---EKSLKKMAETFNDGFMTSGEGNNHY 1127 Query: 1090 YQRLWRQLTPE 1100 RLW Q T E Sbjct: 1128 IARLWPQWTDE 1138 >UniRef50_A6FE97 Putative exodeoxyribonuclease V n=1 Tax=Moritella sp. PE36 RepID=A6FE97_9GAMM Length = 1130 Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/1139 (44%), Positives = 687/1139 (60%), Gaps = 34/1139 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +YHSN+LD+L+ LM + ++ L DPF E +LVQS GMAQW++M L++ GI+ANI Sbjct: 1 MFNLYHSNQLDILKELMAHFIAKDPLADPFVEEQVLVQSPGMAQWVKMELAKSMGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPASFIW MF +VLP+IP +SAFNK++MSWKLM +LP+LL +F L+HYL DD D Sbjct: 61 TFPLPASFIWKMFQKVLPDIPDKSAFNKEAMSWKLMLILPELLVLAEFESLKHYLADDQD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 +LFQL K +D FDQYLVYRP+W+A WE G + + WQ LW+ LV T LG Sbjct: 121 DYRLFQLCQKISDTFDQYLVYRPEWIAGWEGGDNMHA--DTHPWQPLLWRELVAKTEVLG 178 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q +HRANLY +FI L S+T LP R+F+ G+SALPP YL ALQAL H EIH + Sbjct: 179 QSHYHRANLYDQFIARLNSSTFDAKLLPDRIFVFGVSALPPRYLDALQALAMHTEIHFML 238 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHS----FEDRELPLFRDSENAGQLFNSDGEQDVG 296 +NPCR YWGD+ DP +L K T H+ D+ D + LF+ D VG Sbjct: 239 SNPCRLYWGDLIDPKWLLKQRTMVNHHNVTLGMSDKVSA--NDEQTVRALFDEDDAFKVG 296 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 NPLLAS GKLGRD + LL+ QELD FV+ T D LL +IQ DIL+L +R++A N+ Sbjct: 297 NPLLASMGKLGRDNLALLTGF-GCQELDVFVEPTDDGLLASIQRDILDLADRSMAEFNVS 355 Query: 357 E----FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV 412 + S K P++P DSS+ H CHSP RE+EVLH+ LL M E+P L PRD+++M+ Sbjct: 356 QQDTNTRDSRYKLPINPADSSLELHSCHSPMREIEVLHNNLLTMFSENPDLNPRDVVIMM 415 Query: 413 ADIDSYSPFIQAVFGSAPA--DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 D++ YSP+IQAVFG+ +RY+P++ISD A+ +P+L +F+ LL+LP SR ++ Sbjct: 416 PDVNGYSPYIQAVFGAMDRYDERYIPFSISDSGAQYDNPILLSFLQLLTLPLSRCNVSEL 475 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 L+LL+VP + ARF IT + LRQW++ESGIRWG+D+D+ +LP Q+TW FGL R Sbjct: 476 LSLLEVPAVLARFAITPDEFNRLRQWIDESGIRWGLDEDDATRFDLPGMKQNTWLFGLHR 535 Query: 531 MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPV 590 MLLGYA +Q +LPY E G+ AEL+G LA + L L + + +W+ + Sbjct: 536 MLLGYAY-GGDDIYQGILPYQEVQGIEAELLGKLAHFIEALLDSLTSLQDPKSIADWIKL 594 Query: 591 CRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERI 650 +++ F+ D + E ++ +I + + + A Y + +LR L L Q Sbjct: 595 GNTLIDNFYKIDVDDEQSIKMIRDAFSHLDEQLKSASYDKHITPLVLRHYLNNALSQVGA 654 Query: 651 SQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD 710 SQ+FLAG VN CTLMPMRSIPFKV+CLLGMNDGVYPR + P+GFDLM+ K+GDRSRRD Sbjct: 655 SQKFLAGQVNFCTLMPMRSIPFKVICLLGMNDGVYPRSIPPMGFDLMANDLKQGDRSRRD 714 Query: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 DDRYLFLEALISAQ KLYISYIG SI+D SER PSVL+ EL+ Y QS + GDE L+ D Sbjct: 715 DDRYLFLEALISAQSKLYISYIGSSIRDKSERLPSVLITELLQYCQQSFCITGDEGLSPD 774 Query: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP- 829 ES A++ HL H PFD + + P S+A+EWLPA + + +PLP + Sbjct: 775 ESAAQLLTHLIQHHALQPFDARYFNPQAPTSFAKEWLPALAPVVELRQFLTEPLPALISN 834 Query: 830 ---ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN 886 + V L L RF+ HP + FF RL+V F ++ D EPF ++ L +Y + QLL Sbjct: 835 DDMQEVELAELLRFYRHPTKYFFNRRLKVYFNQASLDVLDDEPFDVDNLEKYHLKAQLLE 894 Query: 887 ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDL 945 + D + R A+G LP G FG+I + + + QLA ++ +E+D+ Sbjct: 895 TELMGGDISLVTERLVASGSLPLGRFGKISLDKEVSTVSQLAQVLMPLLTNSNDDIEVDI 954 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLR---- 1001 ++ GWL + GL+R +PS + +Q+WLEHL +C S N + + Sbjct: 955 PLVSGRLFGWLKHIYNGGLVRHKPSGFNGKDYLQVWLEHLCFCISIKNPAATTLVHLTAG 1014 Query: 1002 KDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKT-CYDAQNDAMLDD 1060 K R + +A L QL E Y +G PL + P++G W KT C A LDD Sbjct: 1015 KPVVQRLRVIDQSRARELLFQLFEVYNDGCCQPLALFPKTGWGWAKTKC----TTAALDD 1070 Query: 1061 DSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 K R + + +EG GE D + QR + +L E + + S+ L P+F + Sbjct: 1071 ----YKLRAEAVLNFEGGYNRMGENADDYLQRSFPRLNDEVYKLMSASSESVLFPIFEY 1125 >UniRef50_B6EGE9 Exodeoxyribonuclease V gamma chain n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EGE9_ALISL Length = 1127 Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/1131 (43%), Positives = 701/1131 (61%), Gaps = 34/1131 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN+LDVL++L+ ++ LD+PFE E ILVQS GM+QWL++ L+++ GIAAN+ Sbjct: 1 MFTVYHSNQLDVLKSLVVELIRLNPLDNPFEQEQILVQSPGMSQWLKIELAKELGIAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPA+FIWD+F +VL ++PK SAFNK++M+WK++TLLP+LL++++F L+ YL +D Sbjct: 61 TFPLPATFIWDLFTQVLDDVPKRSAFNKEAMTWKIVTLLPELLKQDEFAPLQRYLENDDK 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + K +QL++K AD+FDQYLV+RP+W+ +WE G V L WQ LW+AL + T LG Sbjct: 121 QLKCYQLAAKIADIFDQYLVFRPEWIQKWEAGEEVIELEGEHPWQPILWQALYDQTLALG 180 Query: 181 QPRWHRANLYQRFIETLES---ATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 +HRAN+++ FIETLE+ T P G+P R+F+ GI++LPP YL AL ALG+HI++H Sbjct: 181 HSPYHRANMFEHFIETLENYLQTGTLPKGMPKRLFVVGITSLPPRYLDALAALGQHIDVH 240 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 L+FTNPC++YWGD++D YLAKL + R +L + ++ LF + E N Sbjct: 241 LMFTNPCQHYWGDLRDNKYLAKLDRQNRIAKRLSSDLSTLENDDS--DLFTNKSE----N 294 Query: 298 PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LLASWGKLGRD LL DLE + E FV ++LLH+IQSDIL LE R+ V Sbjct: 295 SLLASWGKLGRDNFQLLLDLEPN-EYKIFVPTGREDLLHSIQSDILNLEERSRDDV---- 349 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 S++K+P+ P D SI H CHSP REVEVLHD+LL M DP L PRDIIVMVADI+ Sbjct: 350 LDNSEHKQPISPDDRSILLHSCHSPMREVEVLHDQLLDMFANDPELKPRDIIVMVADINV 409 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 YS IQAVFG+A DRY+P+AISD+ A Q +PVL AF++L++LP++R ++L+LL+VP Sbjct: 410 YSAAIQAVFGNAAFDRYIPFAISDQSAEQENPVLLAFMNLMALPENRCGLSELLSLLEVP 469 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + +RF E +++W E+GIRWG+D+ +LP Q++W FG+ RMLLGYAM Sbjct: 470 AVMSRFKFNAEQFEIVKRWAEETGIRWGLDNSTSAHFDLPEHNQNSWLFGIQRMLLGYAM 529 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 E G ++ + Y++ G+ AE+ G+LA + QL ++ L Q + + W + +++ Sbjct: 530 EQDAGLFEGMASYEQVQGMNAEIAGNLAHFIDQLLTYQITLGQAQKINAWRTIINQLMDD 589 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F L + E E + I Q Q + A + + ++ + L L + SQRFLAG Sbjct: 590 FLLVELEGELVVKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLAG 649 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 VN CTLMPMRSIPF V+CLLGM DG YPR + GFDLM ++ K GDRSRRDDDRYLFL Sbjct: 650 KVNFCTLMPMRSIPFDVICLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRYLFL 709 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 EAL SA + Y+SYIGRSI+DN+E+ PSVLV EL++Y QS+ L GD LN +ES + Sbjct: 710 EALQSANKAFYLSYIGRSIRDNTEKAPSVLVSELLEYCQQSYCLDGDSELNPEESAKHLV 769 Query: 778 AHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF-VQPLPFTLPETVPLE- 835 LT H +P+ Q++ G+ SYA EWLP A G+A EF +PL F PE+ LE Sbjct: 770 KKLTIEHPLVPYSQQSF-VGDNTSYASEWLPTAKLEGQAAPEFQTEPLVFA-PESKELEL 827 Query: 836 -TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDA 894 LQRFW PV FF L+V F T +S + D EPF ++G + Y + +LL L+ DD Sbjct: 828 TELQRFWRLPVAYFFNRGLKVFFETVESRVEDDEPFSIDGRTGYGMKSELLEELLAYDDP 887 Query: 895 ERLF---RRF----RAAGDLPYGAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDLA 946 ++F R F +A G LP G+FGEI + + +++L D + P + E+ L Sbjct: 888 NQVFQLSREFYQQQKAQGKLPIGSFGEIAADKEVNTVKELVDHIQPLTTSPLEDQEVRLR 947 Query: 947 CN----GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRK 1002 +++ GWL Q +G+LR+R + + + W++HL CA + LF Sbjct: 948 FTFPHGEMELQGWLKQRYKEGMLRYRGGKIRSHEVLATWIDHLCLCAMKQQQFTHLF-GT 1006 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 D + F P+ E+A +L ++ Y G APL LP++ A L+ D + DDD Sbjct: 1007 DAIYHFEPIETEKAYQHLEVILSLYISGNCAPLPYLPKAALAGLEAHIDKKG-VWNDDDE 1065 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFL 1113 T +KA K Y G GE + + R+W + E + I + ++ L Sbjct: 1066 THEKALKKMADEYSGTRYA-GENSNDYVMRMWPEWNDELGQTIFDNAKNVL 1115 >UniRef50_Q2BKD9 Exodeoxyribonuclease V, 125 kDa subunit n=2 Tax=Neptuniibacter caesariensis RepID=Q2BKD9_9GAMM Length = 1092 Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/1038 (45%), Positives = 646/1038 (62%), Gaps = 30/1038 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +VYHSN L VL+ L+ ++ R+ + DPF E ILVQS GMAQWL++ L+ K GIAA+I Sbjct: 1 MFQVYHSNSLLVLKDLLTELIRRDPISDPFVAEQILVQSPGMAQWLKLELADKSGIAASI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASF+W F VLP++P+ SA+NK++MSWKLM +LP +L++ F+ L+ YL DD D Sbjct: 61 DFPLPASFLWKHFSEVLPDVPERSAYNKEAMSWKLMAVLPAMLKQPVFSALQQYLADDDD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + +L+QL +K AD++DQYLVYRPDW+ WE G + WQ LW+ L YT L Sbjct: 121 RFRLYQLCNKIADIYDQYLVYRPDWIEDWEQGGDIAA--ARHPWQPVLWRELKSYTEDLQ 178 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q WHRAN++ F++ L++ + LP R+F+ GISALP Y+ ALQALGK I++HL+ Sbjct: 179 QSHWHRANMFSAFVDGLKNPSAAE-KLPRRLFVFGISALPQNYVHALQALGKRIDVHLMV 237 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPCRYYWGDI D + +A+L R F +L +E GNPLL Sbjct: 238 MNPCRYYWGDILDQSQIARL----NRRWFSKPDLDFSDYAE--------------GNPLL 279 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS GKLGRDY+Y L D + E+DA+ D +LL IQ DIL+LEN E+ Sbjct: 280 ASMGKLGRDYLYQLQD-NALDEIDAYADPERGSLLSAIQQDILDLENPTRLP---EQIDN 335 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 S K LD D SI H CHS RE+EVLHD+LL M E++P L PRD+IVM+ D+ +Y+P Sbjct: 336 SHGKHRLDREDRSIELHSCHSALREIEVLHDQLLDMFEKNPLLKPRDVIVMMPDVAAYAP 395 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I+AVF +APA+RY+PY+ISDR RQ +P+L +F +L L SRF DVL LL+VP + Sbjct: 396 YIEAVFANAPAERYIPYSISDRSNRQENPLLLSFEKILKLNSSRFTVSDVLELLEVPAVM 455 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 R + E+ + LR WV++ IRWG+D + ELP Q++WRFG+ RML+GYA+ Sbjct: 456 RRVGLDEKSFQKLRFWVDQVNIRWGMDSEQRSIWELPLFEQNSWRFGIKRMLVGYALGEG 515 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 WQ V PY E GL +EL+G LA + L+ R Q+ W+ V +L +F Sbjct: 516 SEYWQGVAPYTEIEGLESELLGKLAGFIDLLDETRLHFTQDHEFSTWIEVINQILENYFT 575 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 D + E ++ I + Q + + A Y A+ S++ L ++Q+R SQRF+ G VN Sbjct: 576 ADEQDEISLNTIRKTLQGLQEQLKDANYSQALSPSVIAHYLIDGINQQRSSQRFMVGSVN 635 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 CTLMPMRSIPF VVCLLGMNDG YPR + P+GFDLM+ P+RGDRSRRDDDRYLF+EAL Sbjct: 636 FCTLMPMRSIPFSVVCLLGMNDGTYPRSIPPVGFDLMTDYPRRGDRSRRDDDRYLFMEAL 695 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 +SAQ+KLYISYIGRSI+DN+E+ PSVLV EL+DY Q + L GDE L+C S +++AH+ Sbjct: 696 LSAQEKLYISYIGRSIRDNNEKIPSVLVSELLDYAEQGYVLEGDEELSCSNSGEKLRAHI 755 Query: 781 TCLHTRMPFDPQNYQ-PGERQSYAREWLPAASQAGKAHSEFVQP--LPFTLPETVPLETL 837 H + F P+ ++ G+ S+A EWLPAA +A F+ LPE + L+ L Sbjct: 756 KTQHPLVAFSPEYFKSAGDYFSFASEWLPAAQAESRAAEVFLTEDLTSEALPE-LELKQL 814 Query: 838 QRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERL 897 F P R+FF RL+V F + E D EPF L+ LS Y + Q+ L + ++ D ERL Sbjct: 815 ISFLRDPCRSFFNNRLKVYFGNSEIEAQDEEPFSLDNLSSYLLKQRYLQSALQDRDLERL 874 Query: 898 FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG-QSMEIDLACNGVQITGWL 956 + A G LP GE+ + +LA+++ + Q +EI+L+ V++ GWL Sbjct: 875 DKAILAEGRLPLARAGELNLNKLRHDSLELAEKLKPLSEGTPQRIEINLSIGEVKLQGWL 934 Query: 957 PQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQA 1016 PD LLR+RP+ ++ + W+EHL CAS + ++ G+ + + AE+A Sbjct: 935 DSCYPDHLLRYRPAQVNARDRLSTWVEHLALCASNQACRNTVYRGLSGKVFYKAVPAEKA 994 Query: 1017 LHYLSQLIEGYREGMSAP 1034 L+ LI Y++G +AP Sbjct: 995 TELLADLIRFYQQGQTAP 1012 >UniRef50_A1SUW0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Psychromonas RepID=A1SUW0_PSYIN Length = 1149 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/1131 (42%), Positives = 674/1131 (59%), Gaps = 50/1131 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M RVYHSN+L +L+ L+ +++ +L DPF E ILVQS GMAQWLQ+ ++Q GI+ANI Sbjct: 1 MFRVYHSNQLALLKDLLVALMQGAKLTDPFASETILVQSPGMAQWLQLEIAQSTGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASFIW F VL ++P +S FNK SM+W++M LLP LE DF+ L HYL DD Sbjct: 61 DFPLPASFIWQQFKHVLKDVPDKSPFNKMSMTWQIMRLLPDCLEDPDFSALLHYLEDDLY 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETG-------------HLVEGLGEAQAWQAP 167 RK FQLS K AD+FDQYLVYRP+W+A WE + E Q WQA Sbjct: 121 LRKRFQLSQKIADIFDQYLVYRPEWIAAWENASEQEISQWHAENTESIPAWLEDQRWQAK 180 Query: 168 LWKAL---VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYL 224 LWK L + + + +HRA LY+ F++TL + T LP R+F+ GISALP YL Sbjct: 181 LWKKLTLTIAESFKAQGKAYHRAGLYKDFLDTLATKKTLE-HLPKRIFVFGISALPESYL 239 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRH----SFEDRELPLFRDS 280 QAL L +H ++H L TNPCRYYW DI DP LAK + R+ E + LP Sbjct: 240 QALLGLAEHCDVHFLLTNPCRYYWADIVDPKLLAKRFAQSRQKLTVSGGEIKNLPDSSWQ 299 Query: 281 ENAGQLF---NSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHN 337 ++A L ++D + +VGNPLLAS GK+GRD+++ L LE QE+DAFVD+T D+LLH+ Sbjct: 300 KDASHLQWSQSNDPDNEVGNPLLASMGKMGRDFLFQLYSLEQ-QEVDAFVDITRDSLLHH 358 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKR-PLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 IQ+D+L+L++ + A S+ + R L P +S+T H+CHS REVE+LHD LLAM Sbjct: 359 IQADVLDLQDSSQA------LSKDPSARISLAPEGNSLTLHLCHSVMREVEILHDNLLAM 412 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFIS 456 D LTP+DIIVMV DID Y+P++QAVF S +RY+P++ISD A+Q +P+L +F+ Sbjct: 413 FAADNNLTPKDIIVMVPDIDQYAPYVQAVFASVEQNRYIPFSISDVSAQQENPILISFLQ 472 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL+L +R+ ED+LALL+VP + RF++ ++ L++W+NESGIRWG+D+ + + +L Sbjct: 473 LLNLNQTRYTREDILALLEVPAILQRFNLNQDEFVLLQKWINESGIRWGLDEKSAAQWDL 532 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 P Q++W FG+ RMLLGYA+ ++ + YDE GL +L+G + L + Sbjct: 533 PRLSQNSWLFGIRRMLLGYAISDTL--FEGISAYDEIQGLQGDLLGRFIDFIDALIKLQE 590 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 GL Q +W +L F+ D + ++LI + ++ A + + L + Sbjct: 591 GLKQSYNANQWQAFVYQLLEDFYQEDDDNTMVLSLIRNEMDNLLDHTGQADFTQPISLFV 650 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 L + L Q L + SQRFLAG VN CTLMPMRSIPFKVVCLLGMNDG YPR + P+GFDL Sbjct: 651 LIEHLEQHLSDQGNSQRFLAGQVNFCTLMPMRSIPFKVVCLLGMNDGQYPRNIVPMGFDL 710 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 M+ KRGDRSRR++DRYLFLEAL+SAQ+K YISYIGR I DNSE+ PSVLV EL++Y Sbjct: 711 MAGHRKRGDRSRREEDRYLFLEALLSAQEKFYISYIGRDINDNSEKMPSVLVSELLNYCQ 770 Query: 757 QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREW---LPAASQA 813 QS L ++ +E +KA ++ + F + YQ G+ ++Y W L A A Sbjct: 771 QSFVLKDNQQDQNRVAEKALKAFISFHYPMQSFSERYYQ-GDVKTYNPNWWAALKDAKNA 829 Query: 814 GKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 G+ + + L +L E VPLE L++F HP + FF RL V F +D + + EPF Sbjct: 830 GEKSHKRLLTLDQSLTE-VPLEQLKQFLKHPCKVFFNQRLDVYFELDDDQQENDEPFSFN 888 Query: 874 GLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA 933 L +Y + + +E + LF RAAG LP+G F + + + M+ LAD + Sbjct: 889 HLQQYVLKHEQFEYALEGKSLDNLFIEKRAAGKLPFGEFAALIFTKDLEPMENLADLTTS 948 Query: 934 CR-QPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYC-ASG 991 +++ ID+ ++ G L GL+R + + + LWLEHL YC ASG Sbjct: 949 YFIGEIETINIDIQFAEKRLFGELNDHCEKGLVRVKTGNIKGKDILTLWLEHLCYCIASG 1008 Query: 992 GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYD 1051 N S L +K+G + F L A+ A + +S+L+ Y G+ PL +S AW + + Sbjct: 1009 QNLNSTLLGQKEG-FYFKELPADYAYNRISELLALYEAGLQQPLPFFIQSAFAWCEQVHK 1067 Query: 1052 AQNDAMLDDD---STLQKARTKFLQAYEGNMMVRG--EGDDIWYQRLWRQL 1097 + + + DD +T+ +A+ + + RG EG D + R + L Sbjct: 1068 LEPNCFVFDDLEFATIAEAQQVASLCFSND---RGFSEGQDPYINRCYENL 1115 >UniRef50_C4L7B2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B2_TOLAT Length = 1130 Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/1148 (42%), Positives = 674/1148 (58%), Gaps = 59/1148 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M RVYHSN+LDVL++L+ +++ L E ILVQS GMAQWL+ L+Q G+AANI Sbjct: 1 MFRVYHSNQLDVLKSLLAHLIQLSPLQPALAAETILVQSPGMAQWLKQALAQDLGVAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLP+SFIW MF +VLPE+P+E+ + K +M W+LM LLPQ ++ F L YL +D D Sbjct: 61 TFPLPSSFIWQMFHQVLPEVPQENPYTKPAMLWRLMQLLPQCMDDVLFAPLAGYLAEDHD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 R+ +QL + ADLFDQYLVYRPDW+ WE+G +G E Q WQ LW+ LV T Q Sbjct: 121 GRRCYQLCQRIADLFDQYLVYRPDWIVDWESGG-AQG-AETQLWQPVLWRKLVALTEQQA 178 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HR NL+ FI TL++ LP R+F+ GIS+LPP YL+AL ALG+H E+HLL Sbjct: 179 S-HLHRVNLFSSFINTLKAGKP-KAVLPQRLFVFGISSLPPHYLEALMALGEHCEVHLLL 236 Query: 241 TNPCRYYWGDIKDPA-----YLAKLLTRQRRHSFEDRE--LPLFRDSENAGQLFNSDGEQ 293 TNPCRYYWGD+++ L KLL QRR ++ E PL ++ + QLF+ +GEQ Sbjct: 237 TNPCRYYWGDLQEENQINQRVLNKLLA-QRREQWQQAEQHKPLLPET-DWQQLFSDEGEQ 294 Query: 294 DVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGV 353 GNPLL S GK GRDY+ LL+++ S+ E+DAF ++ D+ L + Sbjct: 295 Q-GNPLLVSLGKQGRDYLSLLAEI-SAAEIDAFAEINGDS----------LLHLLQQDLL 342 Query: 354 NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA 413 +++ +R KRP+ D S+ H CHSP REVEVLHD+LL DPTLTP++++VMVA Sbjct: 343 ELQDGTRLRPKRPISASDRSLVLHGCHSPLREVEVLHDQLLQRFAADPTLTPKEVVVMVA 402 Query: 414 DIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLAL 473 DI+ Y P++QAVFG+A +RY+P++ISDR A Q +P+L++F++LLSLPD R + ++L L Sbjct: 403 DINRYGPYVQAVFGNATGERYIPFSISDRSATQENPLLQSFLTLLSLPDQRCTATELLEL 462 Query: 474 LDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLL 533 L VP L RF + E L LR+W ESG+RWG++ + ELP +HTW FGL RMLL Sbjct: 463 LAVPALLKRFGLAEADLTTLRRWAMESGVRWGLESGDGERFELPPRERHTWSFGLERMLL 522 Query: 534 GYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRD 593 G+A + + V PY G A +G LA + Q+ R L RP+ EW + Sbjct: 523 GFA-SGNETLFADVAPYTAIEGQNAVKLGQLARFIAQVMALRDELETARPITEWQNLVDR 581 Query: 594 MLNAFFLPDAETE----AAMTLIE---QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD 646 +L F+LP + E AA+ LI Q WQ +++ QY + +PL++ D L L+ Sbjct: 582 LLLDFYLPQEQLEEDDAAALNLIRSTLQSWQQRLSQ---MQYQEPLPLTVFHDHLQSELN 638 Query: 647 QERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR 706 R Q+FLAG VN CTLMPMR+IPF++VCLLGMNDG+YPR + PLGFDLM+ +P++GDR Sbjct: 639 AVRGGQQFLAGRVNFCTLMPMRAIPFRLVCLLGMNDGLYPRSMPPLGFDLMADQPRKGDR 698 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEA 766 SRR+DDRYLFLEAL++AQQ+LYISY+ S DN + PSVLV EL++Y ++ LP DE Sbjct: 699 SRREDDRYLFLEALLAAQQQLYISYVAHSAIDNRDLMPSVLVTELVEYCQRAFLLPEDEE 758 Query: 767 LNCDESEARVKAHLTCLHTRMPFDPQNYQP------GERQSYAREWLPA---ASQAGKAH 817 E E + HL H +P+D + + P + SYA EWLPA QAG Sbjct: 759 KAETEQETALHQHLLTGHPLVPYDRRYFSPTVPPATADLFSYAAEWLPALTPTGQAGFFD 818 Query: 818 SEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSR 877 + P + L RF+ +PV FF+ RL+V F ++ + +TEPF L+ L + Sbjct: 819 ARLSLPEELQGKPEIELADWLRFFRNPVAGFFRRRLRVQFVEREAALEETEPFWLDKLQQ 878 Query: 878 YQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV----IA 933 YQ+ ++LL D R A G LP G FG + + + + LA + +A Sbjct: 879 YQLRERLLRYQRLDVDQAVWQARLLAEGMLPDGEFGRLALQADAKNLAPLAAALQTWPLA 938 Query: 934 CRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN 993 Q ++ +D A G Q+ G + +V L+R R S L + + +WLEHL A+G Sbjct: 939 TAQ-RETFHLDFA--GWQLLGSVGEVYAGQLVRHRVSKLKASWLVAIWLEHLALSAAGKL 995 Query: 994 GESRLFLRKD----GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTC 1049 + L D GEW L+A+ A L + + EGM PL + + WL+ Sbjct: 996 TQPTRLLALDNGKLGEWLLAVLSADAAREQLLLWWQAFTEGMQRPLCLPVNTAWQWLEKA 1055 Query: 1050 YDAQNDAMLDDDSTLQKARTKFLQAYEGN-MMVRGEGDDIWYQRLWRQLTPETMEAIVEQ 1108 L DD+ +AR + Y G+ V GEG D + R + +L+ E E I E Sbjct: 1056 --TTESGCLGDDAQQLQAREAAQKTYTGDGTFVSGEGQDTYLARCFPELSSEYWEEIEEW 1113 Query: 1109 SQRFLLPL 1116 + + LLPL Sbjct: 1114 AVQLLLPL 1121 >UniRef50_A4SSU8 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Aeromonas RepID=A4SSU8_AERS4 Length = 1134 Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/1159 (42%), Positives = 673/1159 (58%), Gaps = 92/1159 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +YHSN+LD+L+ L+ + + L PFE E +LVQS GMAQWL++ L++ FGIAANI Sbjct: 1 MFTLYHSNQLDLLKELLVNHIRQAPLAHPFEQEQVLVQSPGMAQWLKLELAKAFGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL----- 115 +FPLPASFIW+MF RVL ++P++S +NK +MSW+LMT+LP LL+R F L YL Sbjct: 61 EFPLPASFIWEMFTRVLADVPRQSPYNKGAMSWQLMTILPALLDRPAFAPLAAYLGGGDE 120 Query: 116 ---TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE-------AQAWQ 165 D ++ +L+QL K ADLFDQYLVYRPDW+A+WE G + G Q WQ Sbjct: 121 QDPAGDPEQVRLWQLCQKVADLFDQYLVYRPDWIARWEEGEGLVGTESQDLAGVSGQDWQ 180 Query: 166 APLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 LW+ LV T L +HRANLY+ FI L+ P LP RVF+ GISALPP Y++ Sbjct: 181 PELWRELVARTLALSPSGYHRANLYEEFIHELQRTRDLPGKLPQRVFVFGISALPPRYVE 240 Query: 226 ALQALGK--HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENA 283 AL ALG +E+HL TNPCRYYWGD+ D LA+L + + + Sbjct: 241 ALLALGSRPEVEVHLFVTNPCRYYWGDLLDRKTLARLENKLKPGT--------------- 285 Query: 284 GQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDN------LLHN 337 + D Q NPLLAS GKLGRDY++ L +LE SQ ++AFVD+ + LL Sbjct: 286 ----DLDTLQGPANPLLASMGKLGRDYLHQLMELEVSQ-IEAFVDIDEVDASGNVRLLRA 340 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 IQ D+LEL +R +++ S +K P+DP D S+ H CH P RE+EVLHDRLLA+ Sbjct: 341 IQKDVLELGSRGEGQFDLDS---SYHKSPIDPADGSLQIHACHGPMRELEVLHDRLLALF 397 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 E DP+LTP+D++VM+ D++SY P+IQAVFG A +P+A+SDR A Q P+L++F++L Sbjct: 398 ERDPSLTPKDVVVMMPDVNSYGPYIQAVFG---ARGQIPFAVSDRAASQESPLLQSFLAL 454 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L LP +R + ++LA+L+VP + RF++ ++ LR WV E+GIRWG+DD ELP Sbjct: 455 LHLPSARLGAGELLAILEVPAVLRRFELDDDEFNQLRVWVQETGIRWGLDDAYPERFELP 514 Query: 518 ATGQHTWRFGLTRMLLGYAMESA----------------QGEWQSVLPYDESSGLIAELV 561 ++W FGL RMLLG+AM QG S+LPY E G + Sbjct: 515 RMSGNSWLFGLRRMLLGFAMGDGEPVAGMSFCADHGAGQQGAVASILPYAEIEGQQGLAL 574 Query: 562 GHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQ---WQA 618 G LA + L + L +E+ L EW D+L+ F+L D E E + LI Q WQ Sbjct: 575 GKLAWFVDSLAEFLPRLQREQSLPEWSACLLDLLDRFYLADEEEERLLQLIRSQLADWQT 634 Query: 619 IIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLL 678 + E A++ + LL+D L + L + R SQRFLAG VN CTLMPMRSIPFK VCLL Sbjct: 635 QLGE---ARFDQPITADLLQDYLGKVLGESRSSQRFLAGQVNFCTLMPMRSIPFKQVCLL 691 Query: 679 GMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQD 738 GMNDGVYPR LAP+GFDLM+ +RGDRSRRDDDRYLFLEAL+SAQQ LYISY G S QD Sbjct: 692 GMNDGVYPRTLAPMGFDLMAVASRRGDRSRRDDDRYLFLEALLSAQQGLYISYQGFSAQD 751 Query: 739 NSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE 798 NS++ PSVL+ ELIDY+ Q L GDE L+ + S R+ HL H P+ + P Sbjct: 752 NSDKVPSVLLAELIDYVRQGFVLAGDERLDDEASGERLLKHLVVEHPLTPYSRSYFYPEA 811 Query: 799 RQ---SYAREWLPAASQAGKA----HSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQM 851 +YA +WLPA + A E P + + + L L RF+ P + F Sbjct: 812 ESRLFTYAADWLPALNPVRGAANFQSGELPLPPEWGREQGLELAELLRFYRQPAKYFLNR 871 Query: 852 RLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGA 911 RL+V F ++ I D+EPF L+GL YQ+ LL++ + + D+ R + G LP G Sbjct: 872 RLKVWFELNEANIEDSEPFELDGLQHYQLKALLLDSHLAEGDSAVRRERLQLTGLLPQGW 931 Query: 912 FGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSL 971 FG + + EM +LA+R+ Q++EID++ Q+ GW+ Q LL +P Sbjct: 932 FGSLLLDDLDAEMGKLAERLRPWVSEKQAVEIDISLAQGQLQGWI-DTQKGRLLVVKPGS 990 Query: 972 LSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGM 1031 + + W++HL S G++ LF K R P L+A++A L+ L+ + +GM Sbjct: 991 FNGKDLLLGWIQHLCLSLSCAPGDTLLFDAKQ-SLRLPKLSADEARPKLAALVALWAQGM 1049 Query: 1032 SAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQ 1091 PL P + WLK AM + A L + G MV GEG D++ Sbjct: 1050 KRPLPFFPNTAWDWLK--------AMEKEPDKPDAADKAALTRFNGGWMVTGEGQDVYVA 1101 Query: 1092 RLWRQLTPETMEAIVEQSQ 1110 R + PE EA++ Q Q Sbjct: 1102 RCF----PELDEAVLSQLQ 1116 >UniRef50_Q65UM5 RecC protein n=9 Tax=Gammaproteobacteria RepID=Q65UM5_MANSM Length = 1167 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/1150 (38%), Positives = 660/1150 (57%), Gaps = 87/1150 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 + VYHSNRLDV + ++ +++ DDPF+ E+ILVQS GMAQWLQ+ +++K GIAAN+ Sbjct: 21 VFTVYHSNRLDVQKDILIELMQLLPPDDPFQTEIILVQSPGMAQWLQLKIAEKKGIAANL 80 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD-- 118 FP+PASFIW ++ VL ++ +++ FNK +M+W+LM L+PQ L F L +YL + Sbjct: 81 KFPMPASFIWQQYINVLEDVSQQTQFNKDAMTWRLMQLIPQFLSEPCFQALENYLKNSPY 140 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH---LVEGLGEAQA------------ 163 S+++KL+QL+ K ADLFDQYLVYRP+W+ WE + + +G Q Sbjct: 141 SEQQKLYQLARKVADLFDQYLVYRPNWIHAWENNQPESIEQAIGTYQKDDNPELITQIKR 200 Query: 164 ---WQAPLWKALV-EYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISAL 219 WQ LW+AL+ E G HRANL+Q FI+ L SA P LP R+FI GISAL Sbjct: 201 DIKWQGILWRALIDEVQRGAGYKVRHRANLHQAFIDKLRSAK--PENLPQRIFIFGISAL 258 Query: 220 PPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD 279 P YL+ +A+ ++ +IHL F NP R YWGDI D +L KL TRQR +E+ L Sbjct: 259 PQSYLETFEAMSRYCDIHLFFNNPSREYWGDIVDDRFLQKLQTRQRFDHYENNHTALLSS 318 Query: 280 S-----ENAGQLFNSDGEQD-VGNPLLASWGKLGRDYIYLLSDL-----ESSQELDAFVD 328 + + F+ D E+ VGNPLLA WGKLGRD+ YLL+DL E ++E+ AFVD Sbjct: 319 ATLTNMQQENYEFSPDNEKLLVGNPLLAGWGKLGRDFFYLLTDLMTRAEEHNREIIAFVD 378 Query: 329 VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEV 388 + LL +Q IL+L AV +N +P + D+S+T H CHS REVEV Sbjct: 379 LDDKTLLSQVQGHILDLIPMAVKKLN----------KPQE--DNSLTIHACHSVMREVEV 426 Query: 389 LHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD-----------RYLPY 437 LHD LL++ E D LTP+DI+VMVADID Y+P+IQAVFG D RY+P+ Sbjct: 427 LHDYLLSLFELDKNLTPKDIVVMVADIDKYAPYIQAVFGQYQKDLQTNQFYQADKRYIPF 486 Query: 438 AISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWV 497 +ISD + +S ++ +F+ LL+L +S+F +E+VLA LD+P + RF I E L +R+WV Sbjct: 487 SISDNKLTESDVLIASFLMLLNLKESQFSAEEVLAYLDIPAIRMRFQIELEDLETIREWV 546 Query: 498 NESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLI 557 SGIR+G++ L+ + W+ GL RMLLGYAM + G WQ L +D+S GL Sbjct: 547 KNSGIRFGLEKRTDNSLK----NYNAWQSGLERMLLGYAMRAENGIWQDSLGFDDSHGLQ 602 Query: 558 AELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQ 617 +L G LA+ + +L W++ L EEW ++++ FFL + ++ A+ +++ Q Sbjct: 603 GKLAGLLAAFIERLYQWQQFLRNPHSYEEWGQALLELVDHFFLENEQSLEAILYLKEIIQ 662 Query: 618 AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCL 677 + + + + + ++ + +A++L+ + S +FL G V+ CTL+PMR+IPFK VCL Sbjct: 663 QLHEQLDEVNFTSKLEIDVIAEVMAEQLNDKNTSLKFLVGKVSFCTLLPMRAIPFKAVCL 722 Query: 678 LGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQ 737 LGMNDG YPRQ P FDLM ++GDR RRDDDRYLFLEAL++A+ Y+SY+G+SI Sbjct: 723 LGMNDGEYPRQQTPNSFDLMQYHRQKGDRFRRDDDRYLFLEALLAAENYFYVSYVGQSII 782 Query: 738 DNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG 797 DN +R PSVLV +L+DY+ ++ N DE +++ L H+ F P N+ Sbjct: 783 DNQQREPSVLVSQLLDYLAEN-------LANNDEEIEQIRTSLVQYHSMTIFSPDNFSAM 835 Query: 798 ERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQ--RFWAHPVRAFFQMRLQV 855 R SYA+EWLP ++ +F Q + + E ++ LQ +F HPV+ FF+ RL V Sbjct: 836 HR-SYAKEWLPLVNRNQYPVPDFTQQISGEIDEVREIDILQLVQFVQHPVKFFFEKRLGV 894 Query: 856 NFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEI 915 F+ D +IP+TE F L+ L + I +L+ D+ + F R + G LPYG FG+I Sbjct: 895 YFQQTDEQIPETENFTLDNLDNFLIKDELIR--FADDETDNYFERLKLEGILPYGHFGDI 952 Query: 916 FWETQCQEMQQLADRVIA--CRQPGQ---SMEIDLACNGVQITGWLPQV-QPDG-LLRWR 968 + E +L +++ A ++P + +D+ V +TG L + QP ++WR Sbjct: 953 YKRRLQNEAAELKNKISAYLSQEPAHQFVEITLDMGEQSVLLTGHLDHLYQPFAQRVKWR 1012 Query: 969 PSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYR 1028 + ++ WL +L+ + N L+ K+G F L AL L ++ Y Sbjct: 1013 VGEVKDKHIIENWLYYLLQLCTTDNVNPPLYYGKNGCIGFKTLEKSTALSILKLYVKAYL 1072 Query: 1029 EGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDI 1088 +G+ +V +LK+C Q + D S R F + + E +DI Sbjct: 1073 QGLKQVQIVPTYKIDDYLKSC---QPETEFDTLSAFNNLRDLF----KSSNNYTNEKEDI 1125 Query: 1089 WYQRLWRQLT 1098 ++ R+++Q T Sbjct: 1126 YWTRVFQQAT 1135 >UniRef50_Q9CM76 RecC n=1 Tax=Pasteurella multocida RepID=Q9CM76_PASMU Length = 1124 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1166 (37%), Positives = 666/1166 (57%), Gaps = 96/1166 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y+SN LDV + ++ + ++ LDDPF+ ++ILVQS GMAQWLQ ++++ GI++NI Sbjct: 1 MFTIYYSNDLDVQKNIL-LTLMQDTLDDPFQSDVILVQSPGMAQWLQWKIAEQQGISSNI 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD-- 118 FP+PASFIW +V LP ++S FNK SM+W+LM L+P+ LE+ +F LRHYL+ Sbjct: 60 KFPMPASFIWQQYVDNLPNTEEQSQFNKASMTWRLMRLIPEHLEQVEFQSLRHYLSSSHQ 119 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQ---------------- 162 ++++KL+QL+ + ADLFDQYLVYRP+W+A WE G + + + Sbjct: 120 TEQQKLYQLAYQIADLFDQYLVYRPEWIACWERGDEATMMAQLERKLKDTRLPIGNAFSQ 179 Query: 163 --AWQAPLWKALV-EYTHQLGQPR-WHRANLYQRFIETLESATTCPPGLPSRVFICGISA 218 WQA LW+ALV + + GQ HRA L +F++ L+ T P LP R+FI GISA Sbjct: 180 DVKWQAILWRALVADILAESGQTVPLHRAYLQTQFLQFLQ--TQHPVNLPPRLFIFGISA 237 Query: 219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFR 278 LP YL+ A+ ++ E+HL FTN CR YWGD+ DP ++ +L QR +P+F Sbjct: 238 LPKGYLEIFYAMSQYCEVHLFFTNGCREYWGDLIDPRFMQRLSQMQRTGYHTALPIPVFH 297 Query: 279 DSENAGQLFNSDGEQDV-GNPLLASWGKLGRDYIYLLSDLE---SSQELDAFVDVTPDNL 334 ++NA + D E G+PLL+SWGKLGRD++YLL++LE + +DA+ ++T +L Sbjct: 298 HTDNARFESSYDHEHLFEGHPLLSSWGKLGRDFLYLLTELEQLEGVRSIDAYTELTSQHL 357 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 L +Q+ IL LE + G+N+ E RS +TFH CHSP REVEVLHD LL Sbjct: 358 LSQVQARILHLEGKQ--GLNLAENDRS------------LTFHSCHSPMREVEVLHDYLL 403 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG--SAPADRYLPYAISDRRARQSHPVLE 452 + ++D TLTP+DI+VMVADID Y+P+IQAVFG + A R +P++ISD R ++ ++ Sbjct: 404 HLFQQDSTLTPKDIVVMVADIDKYTPYIQAVFGQYNQVAQRQIPFSISDNRLSENDVLIA 463 Query: 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVR 512 +FI LL+L +S+F +ED+LALLD+P + RF I L +R WV +GIR+G++ + + Sbjct: 464 SFIHLLALKESQFSAEDILALLDIPAIRNRFQIELMELEQIRHWVAHAGIRFGVEKEQGK 523 Query: 513 ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 + ++W+ GL RMLLGYAM G WQ L +D GL +L G LA + +L+ Sbjct: 524 Q----EKNTNSWQAGLERMLLGYAMREENGIWQGNLGFDPCYGLQGQLAGRLAEFIARLS 579 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 W + L +P+E+W +L FF D + I++ ++ + + + Sbjct: 580 AWYQFLQTPQPIEKWQQHLLTLLTDFFAEDETNITTLRYIQETIVQMVTDIQQTHFDQPL 639 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 ++ D L+ L+ + S +FLAG VN CTL+PMRSIPFKVVCLLGMN+G YPRQ P Sbjct: 640 SSEVVSDVLSALLEDDPNSMKFLAGKVNFCTLLPMRSIPFKVVCLLGMNEGDYPRQQTPN 699 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FDLM ++ DR RRDDD YLFLEAL+SAQ+ Y+S++GRSI DN + PSVLV +LI Sbjct: 700 SFDLMQYDRRKADRFRRDDDCYLFLEALLSAQEAFYVSFVGRSIVDNQSKPPSVLVSQLI 759 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ 812 DY+ + L+ E++ +A L H F P N++ GE S+A +WLP A+ Sbjct: 760 DYLV--------DKLSSAETQ-DWQARLIEQHPMTAFSPDNFR-GENGSFANQWLPLANI 809 Query: 813 AGKAHSEFVQPLPFTL---PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 + ++FVQP+ T+ + L L F HPV FF+ L V+F ++ I D+E Sbjct: 810 QKQERADFVQPIAQTVLAEDREIVLADLIAFIQHPVAFFFKRHLGVSFAKQEERIEDSEN 869 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L+GL RYQIN+QLL +++ + + + + G LP G F +IF Q +++ L Sbjct: 870 FTLDGLMRYQINEQLL--YCDEEKSAEVLAQLKVKGMLPRGEFAQIFALQQQEDIAALKT 927 Query: 930 RVI-ACRQPGQSMEIDLAC----NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEH 984 V +Q +E+DL +++ G L Q+ + WR + ++ W+ + Sbjct: 928 TVADYLKQEAHVVEVDLTIPSGYGDIRLIGLLDQLYAQRRVMWRVGQIQEKHLIENWVYY 987 Query: 985 LVYCASGGNGESRLFLRKDGEWRFPPLAAEQALH-----------YLSQLIEGYREGMSA 1033 L+ CA E ++ K+G+ F L A ++L Y+ ++GY++ Sbjct: 988 LIQCAMLAQHEPPIYYGKNGQATFQALCASESLSVKEIALAQLQIYVESYLQGYQQMQMV 1047 Query: 1034 PLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRL 1093 P+ + A+ T + + RT EG+ G DI++QR+ Sbjct: 1048 PMKNIQRYLEAYGHT-----------ETPDFEMIRTLLHHLAEGDYASDG---DIYWQRV 1093 Query: 1094 WRQ--LTPETMEAIVEQSQRFLLPLF 1117 Q L E + AI E++ + +F Sbjct: 1094 LAQQVLDEERLNAIGERTTSWFKLMF 1119 >UniRef50_A6W0B0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Marinomonas RepID=A6W0B0_MARMS Length = 1131 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1154 (38%), Positives = 650/1154 (56%), Gaps = 65/1154 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M ++Y SNRL+ L L+ I+ ++PF+ E ILVQ+ GMAQWL+M L++ IAA + Sbjct: 1 MFQLYTSNRLEDLAVLLAKILAVSPPENPFDDEFILVQNPGMAQWLKMFLAESHSIAAGL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLP++F+W F + L +IP +S FNK + W+LM LL L +F L YL +D Sbjct: 61 VFPLPSTFVWQTFAQSLDDIPAQSEFNKPFLVWRLMRLLDSRLGDPEFQALSWYLEEDDT 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL----VEGLGEAQAWQAPLWKALVEYT 176 + + FQL S AD++DQYLVYRPDW+ WE G + + E Q WQA LW+ LV Sbjct: 121 QIRRFQLCSSIADIYDQYLVYRPDWIKSWEGGEAQDPKLTAIFEQQPWQAILWRDLVADV 180 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH--I 234 Q G +HR NL + + +S+ P G+P R+FI G+S+LPP L++L+ L I Sbjct: 181 SQRGTSLYHRGNLIEALHDKTQSSAR-PVGVPERIFIFGVSSLPPNTLESLRVLAASGWI 239 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++HL NPCR+YWGD+ D YL + + RQ + G ++D Sbjct: 240 DVHLFLQNPCRFYWGDVVDKHYLGREIKRQ---------------TLKPG--LSTDTLHL 282 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPD---NLLHNIQSDILELENRAVA 351 NPLLASWG+LGRDYI L ++ + EL F D + LL IQ D+L LEN Sbjct: 283 DANPLLASWGRLGRDYIAQLQEM-ADNELVVFEDYRTEQSTGLLQWIQQDVLTLENHGSQ 341 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 + + + P+ D SI H+CHSP REVEVLHD+LL M E DP+LTP+DIIVM Sbjct: 342 QERDAKIRDASYRHPIAADDQSIRVHLCHSPLREVEVLHDQLLQMFESDPSLTPKDIIVM 401 Query: 412 VADIDSYSPFIQAVFGS----APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 + D+++YSPF++AVFGS A +++P+A+ D+ +P+++A++ LL L +SRF Sbjct: 402 LPDVNTYSPFVKAVFGSVKGSAQGRKHIPFALIDQSGGMENPIVDAYLYLLGLGESRFTL 461 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 +++++L+VP + ARF++T + L +RQW E GIRWG+D ++ +LP HTW G Sbjct: 462 SELISVLEVPAVLARFELTADELERIRQWSTEVGIRWGLDGKTAQQHDLPMQESHTWLNG 521 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 + RMLLGYAM W+ L Y + GL A + G LA L+ +N + L + +EW Sbjct: 522 VRRMLLGYAM-GHDHIWEGTLSYGDVEGLEASVAGKLAEFLVAINDAQAKLMESLAPKEW 580 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 + + FFL D E +A L+ +Q A+ + A + + +LR L+ L + Sbjct: 581 ISTLYYLAERFFLVD-EDDAFPALLSKQLDALTLQWQQAHFDAPLDQQVLRQLLSPLLQE 639 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + QRFLAG VN CTLMPMRS+PFKV+C+LG+N+G YPR +AP+GFDLM + + GDRS Sbjct: 640 SQGGQRFLAGRVNFCTLMPMRSVPFKVICVLGLNEGDYPRSVAPMGFDLMVGQYRSGDRS 699 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 RR+DD+YLFLEAL+SA+ YISY+GRSIQDNSE+ PS+LV EL++YIGQS GD+AL Sbjct: 700 RREDDKYLFLEALMSARDCFYISYVGRSIQDNSEKNPSILVSELLEYIGQSCVFEGDQAL 759 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNY-QPGERQ------------SYAREWLPA-ASQA 813 D+++ + L H PF+ Y QP SY +WLPA S Sbjct: 760 TPDDAQKALLEKLILEHPLQPFNAAYYFQPQGSSHESTDQFDKRLYSYDEQWLPALLSVP 819 Query: 814 GKAHSEFVQPLP-FTLPET-VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI 871 ++ PL P + L+ L RF HP R F Q RL+ ++ E + EPF Sbjct: 820 VDEEAQAFSPLEGLEQPRIDLALDELSRFIGHPTRYFTQRRLKAYLSLQEEEEKEDEPFA 879 Query: 872 LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV 931 L+GL+ YQ+ + LL A+++ D+ ++ R G LPYGA G + + + +QL + Sbjct: 880 LDGLAGYQLREGLLQAMLKGDE-DQFVERLSLMGALPYGALGRLSLQQSRGQCRQLLSVL 938 Query: 932 IA-CRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS 990 + + +E++LA + + WL L +R LS Q MQ+W+EHL CA Sbjct: 939 QGYALEECEPIEVNLAMGSIVLQAWLDLPTATTRLSYRIGDLSAHQKMQMWIEHLALCAQ 998 Query: 991 GGNGESRLF-LRKDG---EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWL 1046 G E L L K G + F + A YL+ ++ ++G+ P+ + +S AW Sbjct: 999 GTPKEHHLINLTKTGKLLQHSFIIIPPNDAQDYLNTMLALLQQGLCQPIALPAKSADAWC 1058 Query: 1047 KTCYDAQNDAMLDDDSTLQKARTKFLQAYEGN--MMVRGEGDDIWYQRLWRQLTPETMEA 1104 K+ ++ + D D ++A L+ Y+ N R E DD ++QR + L + + Sbjct: 1059 KSYCSSKT--LEDADIAWEQA----LKLYQDNSSAFTRSEVDDAYWQRYFPDLNRQKAQ- 1111 Query: 1105 IVEQSQRFLLPLFR 1118 V ++ LP+ R Sbjct: 1112 FVSLCEQIWLPMHR 1125 >UniRef50_Q7VRF1 Exonuclease V, subunit n=2 Tax=Candidatus Blochmannia RepID=Q7VRF1_BLOFL Length = 1139 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1157 (34%), Positives = 640/1157 (55%), Gaps = 59/1157 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN LD+ L+ ++ ++L +P +PE+IL++ M+QW+++ L+ FGI+ANI Sbjct: 1 MFMVYHSNCLDLFMRLVINVMSNQKLSNPMKPEIILIEHKIMSQWIEIELTNYFGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F SFI + + +L + S F+K M WK M +LP+L + +++ YL D + Sbjct: 61 IFMTIQSFIRKISIELLSDGIFISNFSKNFMYWKFMEILPKLYSSQKCAVIQKYLCFDVN 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG-EAQAWQAPLWKALVEYTHQL 179 ++KL QLS + LF +YL+YRPDWL W++ +++ L E Q WQ+ +W+ + +T Sbjct: 121 QKKLGQLSEQLVSLFLEYLIYRPDWLDMWKSNKIIDNLNIEHQLWQSEVWRMFLTHT--- 177 Query: 180 GQPRWHRANLYQRFIETLESATTCP--PGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Q + + N R I L++ LP R+FI G++A+ P+Y + L+ L HI+I+ Sbjct: 178 -QLQLYEFNSENRCIFLLQNNYQQIDWTKLPDRIFIYGVTAIAPIYWKILKLLSDHIDIY 236 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQ-RRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 L NPC YW + + K + Q HS+E R+ + + N L Sbjct: 237 LWVINPCEKYWNNTDYMDDINKHVYHQSNNHSWEVRKKYYYNNRCNKSIL-------KSN 289 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQ-ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 LL SWG++G ++LLS LE E+ +FV +++LH +Q++IL+ + + V Sbjct: 290 YSLLNSWGEVGFHTLHLLSQLERPLFEIQSFVFPKTNSMLHILQNEILQFKQYSSNEVQK 349 Query: 356 EE--FSRSDN--KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 E F +S N K L D SIT H CHS RE+EVLHD LL M D L P ++IVM Sbjct: 350 ESSIFKKSANMQKNILKSTDQSITIHECHSLYREIEVLHDNLLRMFSNDSALLPGEVIVM 409 Query: 412 VADIDSYSPFIQAVFGSAPADRYLPYAI-SDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 +I+ Y+ I+++F + +R LP++I SD HP++ +++L++P SRF E++ Sbjct: 410 APNINCYTESIKSIFNNM-FNRQLPFSILSDHSDYIHHPIISTILNILAIPTSRFTVEEI 468 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 +LL +P +A++F I +E ++ LR W+ ESG+RWG+D D LP T +TW FG R Sbjct: 469 FSLLSIPSIASKFSIDDEAMKLLRLWIVESGVRWGLDQDTQENFNLPVTEWNTWYFGFKR 528 Query: 531 MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPV 590 MLLGYA+++ G W+++ PY+ S +V L L L WR L L++W+ Sbjct: 529 MLLGYAIKNQNGSWKNIFPYNYISEEYVHVVSGLGEFLEILKKWRNRLNGAYTLQKWMLY 588 Query: 591 CRDMLNAFF---LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 R+M+N FF + E A+ L++ W I+ G+ Y + V +++LRD+L +L Sbjct: 589 FREMINDFFDFSKLNVEENQALFLLKNCWTNILESGIQLGYINTVTINILRDKLLIQLMN 648 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 ++ + +FL +N C + PM I K++C++G++D +PR F+L+S++ + GD + Sbjct: 649 QKKNYQFLPNAINFCNITPMCFISCKILCIIGIHDNEFPRDRFSYDFNLISKRFRIGDNN 708 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGR-SIQDNSERFPSVLVQELIDYIGQSHYLPGDEA 766 D Y FL A + ++KLY+S+I + + + S+ + ELI+YI Q YL GD+ Sbjct: 709 ICGQDYYAFLLACLLPKEKLYLSFINKLAFCYGNSISSSIFIDELIEYIAQRFYLIGDQN 768 Query: 767 LNCDESEARVKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAASQAGKAHSEFVQ--- 822 L+ + R++ +L ++ MPF N+ ++QS+A EWL AA+ A K + F Q Sbjct: 769 LDIISNIKRIRKYLLYKYSCMPFSCSNFIAYSKKQSFANEWL-AAAYADKNITVFTQSQQ 827 Query: 823 -----PLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFR--TEDSEIPDTEPFILEGL 875 LP + T+ L L F+ HPVR +FQ RL+V F T D + D E F + L Sbjct: 828 QFLTTSLPHIIVSTILLRDLYDFYRHPVRMWFQKRLKVYFYQCTHDILLND-ETFFVSNL 886 Query: 876 SRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR 935 R+Q+N +L++ + + + L+R F +G LPYG+FG+++W QC++M +LA ++ Sbjct: 887 RRFQLNVKLIDYFIHNKNIDTLYREFYDSGMLPYGSFGQLYWIEQCEKMYKLASKIKRYY 946 Query: 936 QPGQ-SMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG 994 ++ I +++ G L VQ +GL+RW+P+ LS+ +WLEHL+YC SGGNG Sbjct: 947 SSKIFTLNITFKIETIKLIGELHSVQENGLIRWKPAYLSMRDCFLVWLEHLIYCFSGGNG 1006 Query: 995 ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQN 1054 ES LF D W FP + QA L LI GY G++ PLL+L +SGGAW+ +D N Sbjct: 1007 ESWLF-GTDSTWHFPNFSKIQAQELLFFLISGYCLGINVPLLLLYKSGGAWINYVFDWNN 1065 Query: 1055 DAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRL-------WRQLTP-----ETM 1102 + D +KA + + ++ G DD + L R+L P E + Sbjct: 1066 RVICSDPDIHKKACQRLIYTWQ------GSSDDTQFSYLRESQDPYLRKLIPLYLNEEDI 1119 Query: 1103 EAIVEQSQRFLLPLFRF 1119 I + S+ +LL L R+ Sbjct: 1120 RIITDVSKDYLLDLMRY 1136 >UniRef50_A6VQ90 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VQ90_ACTSZ Length = 1113 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1047 (39%), Positives = 597/1047 (57%), Gaps = 94/1047 (8%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFP 63 +YHSN LDV ++ +++ +R DPF+ E ILVQS GMAQWLQ+ +++ GIAAN+ FP Sbjct: 7 IYHSNDLDVQAGILISLLQ-QRSTDPFQSETILVQSPGMAQWLQLKIAEADGIAANLRFP 65 Query: 64 LPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL-LEREDFTLLRHYLTDDS--D 120 +PASFIW + LP++ ++S F K++M+W LM LL L L R L Y D + + Sbjct: 66 MPASFIWQQYADNLPDVSEQSPFGKEAMTWHLMALLAILPLPR-----LNEYWRDHALGN 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-----------------LVEGLGEAQA 163 + K +QL+ + ADLFDQYLVYRPDW+ WE G L+ + + Sbjct: 121 QEKRYQLARQIADLFDQYLVYRPDWIDAWEKGDDRYIENQLRYALADNPVLLAQIKQDIR 180 Query: 164 WQAPLWKALVEYT--HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPP 221 WQ LW+ LV H P HR NL+ ++ TL AT P LP R+F+ GISALP Sbjct: 181 WQGQLWRELVAAVCRHTKDSPARHRVNLHLTYLNTL--ATGRPKNLPPRIFVFGISALPK 238 Query: 222 VYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSE 281 YL+ LQA+ +H ++HL F NP ++YWGD+ DP ++ +L + R DRE ++E Sbjct: 239 AYLETLQAISRHSQVHLFFNNPSKHYWGDLADPRFIRELSLKTYREHGSDREANWLSETE 298 Query: 282 NAGQLFNSDGEQD-------VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL 334 +L N + E+ +G+PLLA+WGKLGRD+ YLLSDL +++E A+ + +L Sbjct: 299 KV-RLKNGEFERSADDELLQIGHPLLATWGKLGRDFFYLLSDL-NAREFTAYTPLEGADL 356 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDP--LDSSITFHVCHSPQREVEVLHDR 392 L +++ IL L D ++PL P D S+ H CHSP REVEVLHD Sbjct: 357 LTQVKNRILNLV--------------PDKQQPLQPPKADRSVVLHACHSPMREVEVLHDY 402 Query: 393 LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG------------SAPADRYLPYAIS 440 LL + D TLTP+DI+VMVADID Y+P+IQAVFG P +RY+P++IS Sbjct: 403 LLRQFQADETLTPKDIVVMVADIDRYTPYIQAVFGQYQRYTEDRIGKKRPDERYIPFSIS 462 Query: 441 DRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNES 500 D + ++ +L ++SLL L +S+F +E+VLA LDVP + +F+I L +R WV Sbjct: 463 DGKLSENDVLLATYLSLLDLKNSQFSAEEVLAFLDVPAIREKFEIALSDLPQIRHWVARV 522 Query: 501 GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL 560 IR+G+D + + + W+ GL R+LLGYAM +QG WQ L +D+S GL ++ Sbjct: 523 EIRFGLD----KNCDSAVKNYNAWQAGLERLLLGYAMRESQGIWQDSLGFDDSDGLKGQV 578 Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII 620 VG+LA+ L +L W L Q +E+W +L FF+ D +T I +++ Sbjct: 579 VGNLAAFLDRLAQWHTFLQQSHSIEKWQQNLTALLTDFFVADEQTVDIQQYIRDAVRSVT 638 Query: 621 AEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGM 680 + + + ++ + + ++L+ S +FL G V+ CTL+PMRSIPF+VVCLLGM Sbjct: 639 ELLRSMDFQEDISAEVMAEVMTEKLNDNPNSLKFLVGKVSFCTLLPMRSIPFRVVCLLGM 698 Query: 681 NDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS 740 N+ YPR+ P FDLM ++GDRSRRDDDRYLFLEAL++AQ++LYISY+GRSI DN Sbjct: 699 NENDYPRRRTPNSFDLMRYHRRKGDRSRRDDDRYLFLEALLAAQEQLYISYVGRSITDNQ 758 Query: 741 ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ 800 R PSV+V +L DYI + D AL E +H F PQN+ +R Sbjct: 759 PRQPSVVVSQLQDYINDNL---ADNALRLTEK----------VHPMTIFSPQNFYGNDR- 804 Query: 801 SYAREWLPAA-SQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 ++A+EWLP++ + + + V PL L + L+ L +F HPV+ FF+ +L V F+ Sbjct: 805 TFAKEWLPSSPAMPSGENKQAVLPLTEKLTR-IELDQLVKFVRHPVKYFFENQLGVYFQN 863 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 +D IPDTE F L+GL Y+I L ++ R F R G LP G FG+++ Sbjct: 864 DDDLIPDTENFTLDGLDLYRIKDDFLT--YSDEELCRYFERLSVKGILPRGNFGKVYEAK 921 Query: 920 QCQEMQQLADRVI-ACRQPGQSMEIDLACNGVQITGWLPQVQPDG----LLRWRPSLLSV 974 EM+ ++V Q Q+ I+L +GV+ITG L + D + WR LS Sbjct: 922 VRSEMETFREKVRDYLLQTPQTQAIELDIDGVKITGNLTALYGDSPDKRRIAWRVGNLSD 981 Query: 975 AQGMQLWLEHLVYCASGGNGESRLFLR 1001 G++ W+ HL CA+G S + R Sbjct: 982 GFGLENWVYHLAKCATGEVTSSLMITR 1008 >UniRef50_Q3IJ13 Exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=3 Tax=Alteromonadales RepID=Q3IJ13_PSEHT Length = 1099 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1134 (35%), Positives = 620/1134 (54%), Gaps = 63/1134 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML + SNR++ L+A +++ L PF+ E++LVQS GM+QWL++ LS+ G+AA + Sbjct: 1 MLNIIQSNRMEALQAQFHQLLKTNPLASPFDKEVVLVQSPGMSQWLKIGLSENLGVAAQV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLP+SFIW ++ ++LP +PKESAFNK +++WKL +LP ++ + L+ YL D D Sbjct: 61 DFPLPSSFIWQLYQQLLPNVPKESAFNKPNLAWKLFAILPSCIDEPLYLPLKTYLEGDID 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA----WQAPLWKALVEYT 176 +K F L K AD++DQYL+YRP W+A W++G ++ L + WQ LW+ +V+ + Sbjct: 121 GQKTFALCEKIADVYDQYLMYRPHWIATWDSG--IDELDDVDVTIAPWQPDLWRRIVQLS 178 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 +LGQ ++HRAN+ + + LE+ LP R+ + GISA+ L+ AL + E+ Sbjct: 179 LELGQSQFHRANMQGQLLAALETMDNSL--LPQRISLFGISAIASSQLEVFTALSEKTEV 236 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 L F NP +YWGDI D AK+ + + +PL +++ Q + +G Sbjct: 237 FLFFFNPSEHYWGDIIDEKTAAKISAKYAK-------MPLV-EAQQKKQTNPDEEYYFIG 288 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGV-NI 355 NPLL+SWGKLGRDY L L++ + +D F+DV D LL IQS+I +L + + N Sbjct: 289 NPLLSSWGKLGRDYFEQLVQLDA-RWIDGFIDVFDDTLLGQIQSEIYQLAFKGESLTDNK 347 Query: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 E F + K P+ D+SIT CH+P REVE LHD LL + ++P LTP+DIIVM+ D+ Sbjct: 348 EWFINDEGKLPISATDTSITLSDCHTPLREVERLHDYLLNLFNQNPALTPKDIIVMMPDV 407 Query: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 +YSP+I+AVFG A R++PYA++D Q +PVL +F SL +LP SRF D+L LL Sbjct: 408 GTYSPYIEAVFGGAQGSRFIPYALADLAIEQENPVLSSFASLANLPFSRFGVSDILDLLQ 467 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 V +A +F + ++ W+ G++WGI+ D+ +LPA +TW+ GL R+LLG Sbjct: 468 VTQIAEKFGLEAHEYEQIQYWLERVGVKWGINADHKSSFDLPAIDLNTWQHGLNRLLLGI 527 Query: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 AM Q + + DE G+ + + L + L ++ L + L V ++L Sbjct: 528 AMRDEQCPFNGIYSADEVEGMALDTLNKLVHFIDVLQSFKEQLTPDDTLTNKAHVLSELL 587 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 +A + +++ + +++ + + Y AV ++ + Q + ++ + QRFL Sbjct: 588 SAIYESESDDSWDLLVLQNVLEELQKHHNNGDYSKAVSQRIVSYLIKQGIQEKGVGQRFL 647 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRSRRDDDRY 714 G VN CTLMPMR++PFKVVC+LG+ND YPR + P+GFDL+ K ++GDRSR+ DDRY Sbjct: 648 VGQVNFCTLMPMRAVPFKVVCMLGLNDADYPRNVQPIGFDLVPYSKKQKGDRSRKLDDRY 707 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEAL+SA+ LY+SYIGRS DN R PS LV EL++YIG+S L D+SE Sbjct: 708 LFLEALLSARDNLYMSYIGRSCFDNQPRMPSTLVSELLEYIGRSFAL-------SDDSEK 760 Query: 775 RVKAHLTCLHTRMPFDPQNYQPGER-------QSYAREWLPAASQAGKAHSEFVQPLPFT 827 + L PF+ Y E+ SY WLP+ S + V L T Sbjct: 761 TLPECLISQQHLQPFNSHYYLANEQANTVLSNHSYNPIWLPSES----ITPQVVSALNAT 816 Query: 828 LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 PE + L+ R + +F+Q L + + + D EPF L+ L RY ++L A Sbjct: 817 PPEQLELDVFIRSVCNAQESFYQQSLGLRLPQFNEVVKDEEPFSLDALRRYFYLDEILEA 876 Query: 888 LVEQ--DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQS--MEI 943 + + E++ +R G+LP G + +E+ + LA +V + G+S +E+ Sbjct: 877 NINELPLSTEQILQR----GELPQANVGSLIFESMQHRVDALAGQVKEQIKGGKSDPIEV 932 Query: 944 DLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKD 1003 L +I GWL + + +R + + ++ ++ HLV + E+ L L D Sbjct: 933 ALELENTKIEGWLNHIYLQKQVFYRSASIKAKDLIKGFIYHLVAQSMEQQVET-LILGLD 991 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 + F P++ A L E Y+ + P+ P SG ++K+ D Sbjct: 992 KQVTFAPISKTDADALLVDWFELYKALRNEPVAFFPVSGYEYVKSGGD------------ 1039 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 + KA +KF Y G RGEG++ Y RL Q + + ++ S + L PLF Sbjct: 1040 IAKAMSKFSPQYIG----RGEGENP-YIRLTVQSLNDCQDEFIQWSDKLLAPLF 1088 >UniRef50_A1S6U9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6U9_SHEAM Length = 1163 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1123 (37%), Positives = 621/1123 (55%), Gaps = 79/1123 (7%) Query: 33 EMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMS 92 E ILVQS GMA WL++ ++ GIAA + FPLP++FIW + +LP +PKE+AF K +M+ Sbjct: 32 EQILVQSPGMATWLRLEIAAHNGIAAALSFPLPSNFIWSLCYALLPGVPKENAFTKDAMT 91 Query: 93 WKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 WKLM LLP+L+E+ F LR YL+ DS KLFQL+S+ AD+FDQYLVYRPDW+ WE G Sbjct: 92 WKLMALLPRLIEKPHFEPLRDYLSSDS-PLKLFQLASRVADIFDQYLVYRPDWIVTWELG 150 Query: 153 H---------LVEG--LGEAQAWQAPLWKALVEYTH-QLGQPRWHRANLYQRFIETLESA 200 L +G L + WQ LW+ALV+Y +LGQ WHRANL+Q + L + Sbjct: 151 ENDLSPTGSPLTQGAALPDNCLWQPLLWRALVQYNRDELGQSHWHRANLHQALVAALSNP 210 Query: 201 TTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKL 260 T LP R+F+ GIS+LPP L+ L ALG I + +L +PCR YWGDI D AKL Sbjct: 211 NTDISALPRRLFVFGISSLPPQTLEVLYALGSRIPVTMLSLSPCRQYWGDIVDSKLRAKL 270 Query: 261 LTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDL--E 318 + + H + LP E+ + +VGNPLLA+ GK+GR+ + L+ L E Sbjct: 271 ALKYKAH----KMLP-----EHWEETL------EVGNPLLAANGKMGRELLDLVLSLPPE 315 Query: 319 SSQELDAFVDVTPD-NLLHNIQSDILELENRAVAGV----NIEEFSRSDNKRPLDPLDSS 373 D+ + D +LL +Q+DIL++E VAG ++ + ++ K LD D+S Sbjct: 316 HFTLDDSGYETNDDSHLLGRLQNDILDME---VAGAPLCADLARYQSNEGKFLLDEQDNS 372 Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEE-DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD 432 + CHSP REVE LHD LL +L + L+ ++I+VM+ D+ +Y+PFI AVF S + Sbjct: 373 LVLRSCHSPLREVETLHDHLLGLLSDRQGRLSAKNIVVMLPDVAAYAPFIDAVFASRRGE 432 Query: 433 RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRY 492 Y+PYAI+DR A + P++ F++LL + SRF ++L LL++P + A+F + EE L Sbjct: 433 HYIPYAIADRGAVEESPLIHGFLTLLDINHSRFGLSEILGLLEIPAVMAKFKLDEEELSR 492 Query: 493 LRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDE 552 L W++E+G+RWG D + +L LPA +H+W FG+ R+LLG+++ + LP+ Sbjct: 493 LGNWLSEAGVRWGRDAQSREKLGLPAFDKHSWAFGIRRLLLGFSLGDEGDFYHGTLPFAG 552 Query: 553 SSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLI 612 G A+ VG L + L+ + A L + + F P E + + LI Sbjct: 553 VEGQQAQCVGKLLDFIEHLDEFAARFAAADSLTLKFAELSRLTDTLFAPLPEYQEELNLI 612 Query: 613 EQQW----QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMR 668 + +A+ + + L ++ L +L R+ QRFLAG VN CTLMPMR Sbjct: 613 RETLCDTQKALQSSASSESSLSDISLEVICQTLGSKLTDARVGQRFLAGSVNFCTLMPMR 672 Query: 669 SIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP-KRGDRSRRDDDRYLFLEALISAQQKL 727 SIPFKVVCLLGMN+G+YPR P+GFDLM++ P +RGDRSRR DDRYLFLEAL+SA+++L Sbjct: 673 SIPFKVVCLLGMNEGIYPRVQHPVGFDLMAKTPARRGDRSRRLDDRYLFLEALLSAREQL 732 Query: 728 YISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRM 787 YIS+IGRS +D+SER PS+LV EL+D S Y+ S+ ++ L Sbjct: 733 YISFIGRSERDDSERLPSMLVSELLDCCELSAYV----------SQGKLVNRLVKQQPLQ 782 Query: 788 PFDPQNYQPGE--RQSYAREWLPAASQAGKAHSEFV-QPLPFTLPETVPLETLQRFWAHP 844 PFD + Y + S+A +W P ++ K + V + + + L +L RF+ P Sbjct: 783 PFDHRLYLTNQDITASFAAQWCPQETRPPKPFIDAVLDEVDEDEHKVLELASLIRFYRDP 842 Query: 845 VRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD------AERLF 898 R F Q RL+++ + D+EPF ++ L RYQ+ ++LNA +E D+ + L Sbjct: 843 ARFFCQRRLRLDLSHRLDALDDSEPFDVDALGRYQLQDKMLNAALEADEIRQQLAVDTLC 902 Query: 899 RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV--IACRQPGQSMEIDLACN-GVQITGW 955 R AG LP F ++ + + +++ + DR I GQS+ I L N G ++ G Sbjct: 903 DRLAGAGVLPMAPFDKLLFASYQRDLAPILDRCRFIMGETEGQSLRISLVLNQGHKLVGT 962 Query: 956 LPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWR-FPPLAAE 1014 + +V GLL RP + L+L HL CASG S FL G + F PL + Sbjct: 963 IDKVFAKGLLVARPGTAKAKDVLALYLRHLCLCASGYRQSS--FLLDVGNFHAFLPLTPD 1020 Query: 1015 QALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQA 1074 AL L I Y E + P ++P +++ + + ++ +L + TK+ Sbjct: 1021 NALTSLEDFISHYFESVRTPSPLIPALAMTYIEALAEGAS-----EEESLAELSTKW--- 1072 Query: 1075 YEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 +GN M GE + +RL+ A ++R PL Sbjct: 1073 DDGNGM--GEIAEPHNERLFEFPASFATPAFTVVAERLWKPLL 1113 >UniRef50_P44945 Exodeoxyribonuclease V gamma chain n=21 Tax=Haemophilus influenzae RepID=EX5C_HAEIN Length = 1121 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1072 (37%), Positives = 603/1072 (56%), Gaps = 85/1072 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VY+SN+L+ + ++ + + +DPF+ ++ILVQS MAQWLQ+ L+++ GI+AN+ Sbjct: 1 MFIVYYSNQLEKQKEILSSLFKSLPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD-- 118 FP+PASFIW ++ + LP E+ F+K SM W+LM L+P LE+E+F+ LR+YL+ Sbjct: 61 KFPMPASFIWQLYAQNLPATALENPFDKDSMMWRLMRLIPIFLEKENFSPLRNYLSSSPH 120 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH------------------LVEGLGE 160 S++ KL+QLSSK ADLFDQYLVYRP+W+ WE G L + Sbjct: 121 SEQYKLYQLSSKIADLFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQG 180 Query: 161 AQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 WQ LW+ALV HRA L+ +F+ L + P LPSR+FI GI ALP Sbjct: 181 NTKWQGELWRALVVDVKSDVNEATHRAALHNQFLALL-ADKKAPKKLPSRIFIFGIPALP 239 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQR-RHSFEDRELPLFRD 279 YL LQA+ ++IHL F NPC+ YWGDI D L L +RQR + + +D PLF + Sbjct: 240 TAYLNILQAISSEVDIHLFFNNPCQEYWGDISD-LRLDYLRSRQRYQFNKQDENQPLFSE 298 Query: 280 S-----ENAGQLFNSDGEQ-DVGNPLLASWGKLGRDYIYLLSDLES---SQELDAFVDVT 330 ENA E +GNPLLA+WGK+GRD++Y+L E + ++A+ ++ Sbjct: 299 DQLSQLENAQFDVTYQKENLQLGNPLLAAWGKMGRDFLYILVRDEEHIPTYPVNAYQEIE 358 Query: 331 PDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLH 390 ++LL +QS IL LEN+ + NI + R+ +T H CHS REVEVLH Sbjct: 359 SNSLLGQLQSQILHLENKPL---NIAKNDRT------------LTLHSCHSAMREVEVLH 403 Query: 391 DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR-YLPYAISDRRARQSHP 449 D LL + +DP+LTP+D++VMVADI+ Y+P+IQAVFG D +P+++SD + +S Sbjct: 404 DYLLDLFNQDPSLTPKDVVVMVADINQYTPYIQAVFGQKNGDVPQIPFSLSDNKLSESDV 463 Query: 450 VLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDD 509 ++ ++++LL L +S F +EDVL LLD+P + RF+I+ L +R+WV +SGIR+G+ + Sbjct: 464 LVSSYLTLLRLKESNFSAEDVLVLLDIPAMRERFNISLADLPLVREWVTDSGIRFGLQKN 523 Query: 510 NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLM 569 ++W+ GL RM+LGYAM QG WQ L + S GL EL G+L+ Sbjct: 524 Q------DGINFNSWQAGLERMILGYAMREEQGIWQDSLGLNSSYGLKGELAGNLSHFFT 577 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYG 629 L+ L Q +E+W + +L+ FF+ + +T + I+++ + + Sbjct: 578 ALSALHETLQQAHSIEKWQEILTALLSDFFVRNEDTSDMIFYIQEKINELAEHLKTLHFN 637 Query: 630 DAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 + + ++ D + +L+ S +FLAG VN CTL+PMRS+PFKVVCLLGMND YPR Sbjct: 638 EELQAEVIADVITMQLEDAPNSLKFLAGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQ 697 Query: 690 APLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 P FDLM ++GDR RRDDDRYLFLEAL++A+ YISY+GRSI DN + PSVLV Sbjct: 698 TPNSFDLMQYHYQKGDRVRRDDDRYLFLEALLAARDYCYISYVGRSITDNQPKEPSVLVS 757 Query: 750 ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER--QSYAREWL 807 +L+DYI Q + L E H F P N++ E+ +S+A +WL Sbjct: 758 QLLDYINQGQ---KENVLTVIE------------HPMTAFSPDNFKNNEKFTRSFATKWL 802 Query: 808 PAAS-QAGKAHSEFVQPLPFTLP--ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 P A A +SEF + L E V L+ L F +PV+ FF+ +L V FR +D I Sbjct: 803 PIAQFDASSNNSEFAVTMTENLEKIEEVELDALVSFVENPVKFFFEKQLGVYFRDKDERI 862 Query: 865 PDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEM 924 D+E F L GL Y +N L+ L EQ+ A+ FR+ G LP FG+++ E + Sbjct: 863 ADSENFTLSGLDNYSLNNDLI-YLDEQNFAD-YFRQAEVKGVLPRAEFGKVYAENIRDNV 920 Query: 925 QQLADRVIACRQPGQ-SMEIDLACN------GVQITGWLPQVQPDG--LLRWRPSLLSVA 975 + ++ + S++ +L+ + +++ G++ + D ++ W + Sbjct: 921 LEFKKKIADLGEAKHASVDFNLSVDWQNENQKIRLFGYMDALFGDDSQVIHWHFAKYKDR 980 Query: 976 QGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 ++ W+ +L+ C + N + +D PP+ E AL L ++ Y Sbjct: 981 YCIRPWIYYLIQCVTQENAVPAKLITQDKVLELPPIEREVALAQLQIYVKDY 1032 >UniRef50_B8CMV5 Exodeoxyribonuclease V, RecC subunit n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CMV5_SHEPW Length = 1224 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1230 (33%), Positives = 651/1230 (52%), Gaps = 145/1230 (11%) Query: 1 MLRVYHSNRLDVLEALMEF-IVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++ L ++ + PE ILVQS GM+ WL++ ++++ IAA Sbjct: 1 MLYLVQSNQMEALSQILATELTTPLPGAPLLLPEHILVQSPGMSTWLRLEIARQNNIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 ++FPLP+SFIW + +L ++PKE+AF K +++WKLM LLP L++++DF L +YL + + Sbjct: 61 LEFPLPSSFIWQLCHTLLEDVPKENAFTKAAITWKLMELLPSLIDQDDFAPLANYLNNGN 120 Query: 120 DKR---------------------------KLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 KL+QL + AD+FDQYLVYRPDW+A WE Sbjct: 121 QGHGENDLQSQYLEIDTSETISASHPQSPLKLYQLCGQIADIFDQYLVYRPDWIAAWEAN 180 Query: 153 HLV-----EGLGEAQAWQAPLWKALVEYT-HQLGQPRWHRANLYQRFIETLESATTCPPG 206 + L AQAWQ LW+AL+++ + L + ++HRANL+Q + L+ T Sbjct: 181 EPTLPPKGDKLAPAQAWQPILWRALIQFNANTLHKSQYHRANLHQALFDKLDDPNTSMTS 240 Query: 207 LPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKL-LTRQR 265 LP R+F+ GIS++ P L L L K I++ +L +PC++YWGDI DP A++ L Sbjct: 241 LPRRLFVFGISSMAPQTLDVLHHLAKRIDVIMLSLSPCQHYWGDIVDPRLRARMALQYAN 300 Query: 266 RHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDL---ESSQE 322 + E + + +VGNPLLA+ GK+GR+ + L+ +L ++ Sbjct: 301 KQKLE----------------VEWEDKLEVGNPLLANNGKMGRELLDLMLELPEEHTAFN 344 Query: 323 LDAFVDVTPDNLLHNIQSDILELENRA-VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHS 381 LD + D D +LH +Q DIL+L R G + + D +R L D SIT CHS Sbjct: 345 LDCYQDPGIDCMLHGVQHDILQLSTRGQCLGPDASLYLTVDGRRMLQQDDHSITIRSCHS 404 Query: 382 PQREVEVLHDRLLAMLEEDPT-----LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLP 436 P REVE LHD LL ML + L P+DI++M+ D+ +Y+P+I AVF + Y+P Sbjct: 405 PLREVETLHDHLLEMLSKQTDSKGQPLAPKDIVIMMPDVAAYAPYIDAVFSAKQGSHYIP 464 Query: 437 YAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQW 496 YAI+DR A Q P++ +F+ LL++ SRF D++ +L+VP + RF++ ++ L L++W Sbjct: 465 YAIADRGAVQESPLIASFLHLLNINQSRFGLTDIIGILEVPSVLRRFELDDDSLTILKRW 524 Query: 497 VNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGL 556 + ++G+RWG D + E +LPA Q+ W G+ R++LGY+ +Q L + G Sbjct: 525 LEQAGVRWGRDGASRAEHQLPAFEQNAWALGIKRLILGYSFADNSPLYQQTLAVNGIEGQ 584 Query: 557 IAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQW 616 A+ +G L + L+ LAQ L E + +L AF+ D + + + I Sbjct: 585 TAQALGKLLDFIEALDDVHAALAQNCSLTERIEQLEQLLAAFYSVDDDEQVQLQEIRDAI 644 Query: 617 QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVC 676 + E + + +P+ +L++ RL + R+ QR+LAG +N CTLMPMRSIPFK+VC Sbjct: 645 VTLAEELTESGHTTPLPIEVLQNWFNSRLSESRVGQRYLAGSINFCTLMPMRSIPFKIVC 704 Query: 677 LLGMNDGVYPRQLAPLGFDLMSQ-KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 LLGMNDGVYPR P+GFDL++Q P++GDRSRR DDRYLFLEA++SA+Q+LYISYIG S Sbjct: 705 LLGMNDGVYPRVQHPVGFDLVAQMDPRKGDRSRRLDDRYLFLEAILSARQQLYISYIGNS 764 Query: 736 IQDNSERFPSVLVQELIDYIGQSHYLPGDEALN----------------CDESEARVKAH 779 +D+SER PS+LV EL++Y Q YLP AL D+ E + Sbjct: 765 ERDDSERIPSMLVSELVEYC-QLAYLPAKLALESKASADNYSKQEAAVFVDKIEQAISTQ 823 Query: 780 LTCLHTRMPFDPQNYQPGE-------RQSYAREWLPAASQ------AGKAHSEFVQPLPF 826 L C PFD + Y +QSY+ +W P A A K+ + F+ Sbjct: 824 LICKQPLQPFDERLYHSAHISDSFPLQQSYSAQWCPVAVSQTTTDIADKSSNRFINLDTC 883 Query: 827 TLP---------ETVPLETLQRFWAHPVRAFF----QMRLQVNFRTEDSEIPDTEPFILE 873 L E + L L RF+ +P + +F ++ L +N R +D++ EPF L Sbjct: 884 LLNTAQSDSEEVEEIELSALIRFFRNPAQYYFNRTLKVDLSINVRADDND----EPFSLN 939 Query: 874 GLSRYQINQQLLNALVEQD----DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 L RYQ+ L+ +E D E L R +A G++P F ++ ++ L Sbjct: 940 ALERYQLQSILIEHAIENQTESPDGE-LLERLKAQGNIPLKPFDDLLLSQYLHDITPLIG 998 Query: 930 RVIACR-QPGQSME--IDLAC---------NGVQITGWLPQVQPDGLLRWRPSLLSVAQG 977 R + + + QS+E ID+A +++ G + + GL+ +RP + Sbjct: 999 RSLYLKGESSQSIEIAIDIALVDGSKPVTDQSIKLVGRIDDLSAKGLVNYRPGTANGRDL 1058 Query: 978 MQLWLEHLVYCASGGNGE-SRL------FLRKDGEWR-FPPLAAEQALHYLSQLIEGYRE 1029 ++++L HL CA G+ + +RL +L G + F P+ A QA LS + +++ Sbjct: 1059 IRVYLRHLCLCAMQGSTDITRLNQPINSYLLDIGHFHVFAPITAAQAKSQLSLWLTLFKQ 1118 Query: 1030 GMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIW 1089 G PL+ +P + A++ +A D L++A+ K+L E + + GEG + Sbjct: 1119 GQVQPLMFMPRTALAYV--------EAEGDHTQKLREAQPKWLD--EQSQL--GEGMEPH 1166 Query: 1090 YQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 +QRL+R + + + +Q L PL Sbjct: 1167 FQRLYRFPEDFSEQHFGDTAQTLLSPLISL 1196 >UniRef50_Q15V11 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V11_PSEA6 Length = 1166 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1193 (35%), Positives = 626/1193 (52%), Gaps = 110/1193 (9%) Query: 1 MLRVYHSNRLDVLEA-LMEFIVE-RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 ML + SN+++ L A L+ ++ E + LDD F P+++LVQS GMAQWL++ ++Q GI+A Sbjct: 1 MLHLVQSNKMESLAAYLIGWLGESKSSLDDIFSPDVVLVQSPGMAQWLKIEIAQALGISA 60 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 NIDFPLP+S+IW ++ + ++P++SAF K +M+WKLM++LP++ +R +F + YL DD Sbjct: 61 NIDFPLPSSYIWQLYKGHVNDLPEQSAFTKDNMTWKLMSILPEMSDRTEFASIAQYL-DD 119 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG--HLVEGLGEAQAWQAPLWKALVEYT 176 KL+QL K AD++DQYLVYRP+W+ WE G ++ + AQ WQ LW+ALVEY Sbjct: 120 QQPLKLYQLCQKIADIYDQYLVYRPEWILAWEQGENNVADTDVSAQPWQPILWRALVEYA 179 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 +L + +HRANL+ R + LE + L +F+ G+SA+P L+ AL K ++ Sbjct: 180 KELDESPYHRANLHTRLMAELEDTKSSKDELKP-LFVFGLSAMPVQQLEIFSALAKSRDV 238 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENA-GQLFNSDGEQDV 295 + + NP +YWGDI D K + + + S L + SE+A L D V Sbjct: 239 IIFWFNPSAHYWGDIVD----NKQVLQAKLQSL------LAQASEDAQSGLSGMDDYLLV 288 Query: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENR-AVAGVN 354 GNPLLASWGK GRDY ++ LE DAF++ P++LL ++Q ++L L +R A+ + Sbjct: 289 GNPLLASWGKQGRDYQDMILGLEVELH-DAFIEQEPESLLEHMQHEVLALTHRGAIEPLP 347 Query: 355 IEEFSRSDNKRPLDPL---DSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 +E + + P PL D ++ H CHS RE+EVLHD+LL + + P L P D+IVM Sbjct: 348 AQELLTNGEEYPKIPLAEDDMTLQVHACHSAVRELEVLHDQLLHLFADHPELHPGDVIVM 407 Query: 412 VADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVL 471 + D+ SY+P I VFG ++PYAISDR A+Q P+L +FI L+SL SR DVL Sbjct: 408 MPDVASYAPIIDGVFGGTDKALHIPYAISDRNAQQESPLLNSFIQLMSLHQSRIGLSDVL 467 Query: 472 ALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRM 531 AL +VP + +FDIT E L W+ ++G+RWG D + LP Q+TW FGL R+ Sbjct: 468 ALCEVPAVQRKFDITPEEFDLLSVWLADAGVRWGWDGQDKTRWALPNEPQNTWLFGLQRL 527 Query: 532 LLGYAMESAQ---GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588 L GYAM + + PY+ G +G +L L + Sbjct: 528 LAGYAMGGESMFDDAHEPIAPYEHIEGQHVVALGKFYLFSRELGNALAFCQSAASLHAKI 587 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 ++ +LPD + + + + Q + + Q+ + + EL Q L + Sbjct: 588 KGALSLIEQLYLPDDDDQTYVLQLRQSLEQMTVH--EHQFSGEIVHDVFLAELEQSLSSK 645 Query: 649 RISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRS 707 + QRFLAG VN CTLMPMRS+PFKVVCLLG+NDG YPRQ+ P+GFDLM K +RGDRS Sbjct: 646 GVGQRFLAGYVNFCTLMPMRSVPFKVVCLLGLNDGDYPRQVVPVGFDLMRIGKGRRGDRS 705 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 RR DDRYLFLEA++SA+++LY+S+ G S +DNS R PS+L+ EL++Y Q+ L GDE+L Sbjct: 706 RRLDDRYLFLEAILSARKRLYLSFQGFSAKDNSPRSPSILLSELLEYTQQTFCLAGDESL 765 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQ-----------PGERQSYAREWLPAASQA--G 814 + H+ H PF+P + P S+ WL A Q G Sbjct: 766 ETKTCADNLAKHIYHEHALQPFNPVYFATKRDAHEEEPLPSAMASFQTPWLALAQQLTDG 825 Query: 815 KAHS----EFVQPLPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 HS +F F+LPE V L+ L F+++P +AFF R Q Sbjct: 826 SVHSDKEVDFCPAPLFSLPELAQVTEVELDELLIFFSNPAKAFFSQRWQTRLTRVYDVQS 885 Query: 866 DTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 D EPF L+ LSRY +N++ + +QD RL RA G LP G +I + ++ + Sbjct: 886 DDEPFELDALSRYVLNERFVTT-QQQDWTTRL----RAEGKLPTGNIADISLQPIRKQSR 940 Query: 926 QLADRVIAC------------------------RQPGQSMEIDLACNG------------ 949 L D ++A P + E++ N Sbjct: 941 ALIDALVALIGGPLDEVPPTRAEVNFELSYLLDISPVPASELNANTNSSTQNSVSATSTQ 1000 Query: 950 -VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR----LFLRKDG 1004 +QITGW+ + L+ WRP + +QLWL L CA+G + + + + Sbjct: 1001 RIQITGWVDNLYGGNLVLWRPGKVKGNNVLQLWLTWLALCANGSVAKHQRAYYIGVEDKE 1060 Query: 1005 EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 + + ++A L+ I +R G L P++ WL D+ L Sbjct: 1061 PFSIGAVDKDEAKTQLAIFIRYWRLGQLQVLHFYPKTAYEWLSVG---------DEAKAL 1111 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 KA+ A+ G+ +GEG++ +R+ L + A E S PLF Sbjct: 1112 MKAKN----AFYGSYFAKGEGEEPHIRRVCPDLN-QHFCAFSEVSHALFDPLF 1159 >UniRef50_A5GC93 DNA helicase/exodeoxyribonuclease V, gamma subunit n=7 Tax=Geobacter RepID=A5GC93_GEOUR Length = 1091 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1115 (35%), Positives = 601/1115 (53%), Gaps = 76/1115 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L++Y SNR++ L + +VE+ L PF PE I+VQS GM +WL M L+++FG+ AN + Sbjct: 3 LKIYTSNRMETLVDQLAGVVEKP-LPSPFTPETIVVQSKGMQRWLAMELARRFGVWANGE 61 Query: 62 FPLPASFIWDMFVRVLP---EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 FP P + + +F V+P E P+ S+F+ ++W+LM LLP L F L YL DD Sbjct: 62 FPFPNAVVETLFRAVIPDLAETPQVSSFHPDVLTWRLMELLPSCLGGPGFEPLAGYLADD 121 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQ 178 D K QL+ K AD FDQY +YRP+ L WE G EG WQ LW+ LV Sbjct: 122 GDGLKRLQLAEKIADTFDQYTIYRPELLLSWEEG--AEG-----GWQGLLWRELVRNATD 174 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 HRA L F + T LP R+ + GI LPP +++ L + + EI+L Sbjct: 175 -----RHRAALLAEFRRRINRPDTAAAELPRRISLIGIPTLPPFHMEVLSGIARQTEINL 229 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 NPCR YWG I LA+L +RR ED PL G + GNP Sbjct: 230 FLLNPCREYWGKIVSERELARL---ERRGLDED---PLH-------------GYFETGNP 270 Query: 299 LLASWGKLGRDYI-YLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LLAS G++GRD+ L+ D ++ D F ++ LLH IQ++IL+L +R AG Sbjct: 271 LLASMGRIGRDFFDSLIGDCGDAEFSDTFTEIRGSGLLHAIQANILDLRDRGAAG----- 325 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 ++ ++ D ++ H CHS RE+EVL+D++L++ + DPTL+PRDI+VM DI++ Sbjct: 326 -----DREVIEATDDTLRIHSCHSAMREIEVLYDQILSLFDNDPTLSPRDILVMTPDIEA 380 Query: 418 YSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Y+P+I AVFG+ P R +PY+I+DR R+ E +++L L SRF +VL +L+ Sbjct: 381 YAPYISAVFGTPEQPEQR-IPYSIADRSLRREGETAEVLLAILQLCGSRFAITEVLDILE 439 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 + RF +T++ L + QW+ + IRWGID +PA +++W+ GL R++LGY Sbjct: 440 AAPVCRRFGLTDKDLETVHQWLTATNIRWGIDAMERTGHGVPAFSENSWQAGLDRLILGY 499 Query: 536 AMESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 AM + +LPYD G A L+G L + LA+ R +EEW V R + Sbjct: 500 AMAGEDRHFFGEILPYDHLEGSDALLLGRFLEFCETLFSRVQALARPRQIEEWTAVLRSL 559 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 L F D + E + + + + + A +G V + ++R L ++L E+ F Sbjct: 560 LGTFIKADGDDERDVATLLKVIERLDECRAHANFGGDVGIEIVRAWLGEKLGSEQRGFGF 619 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L G V C ++PMRSIPF+V+ LLGMNDGV+PR+ P GFDL++ P+RGDRS+RD+DRY Sbjct: 620 LTGGVTFCAMLPMRSIPFRVIALLGMNDGVFPRRNRPHGFDLIAASPRRGDRSQRDEDRY 679 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEAL+SA+++ ISY+G+SI+DNSE PSVLV EL+DYI + G+EA DE+ A Sbjct: 680 LFLEALLSARERFSISYVGQSIKDNSELPPSVLVSELLDYIAKGFTRAGEEA---DETAA 736 Query: 775 RVKAHLTCLHTRMPFDPQNYQPGERQ--SYAREWLPAA----SQAGKAHSEFVQPLPFTL 828 V+ ++ H PF ++P + + SY+RE L + + +PLP Sbjct: 737 -VRG-ISVRHPLQPFSRDYFRPNDGRLFSYSRENLHGVLAAIAPPAVPATFLSRPLPPAE 794 Query: 829 PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 V L L F+A+P + F + RL + D ++EPF L+ L +Y + Q+++ AL Sbjct: 795 ETLVTLYDLAEFFANPCKHFLRRRLGIYLEQRDESFAESEPFSLDHLGKYMLGQEIVAAL 854 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR--QPGQSMEIDLA 946 + + + R+ G+LP G G I ++T A++V A P +EIDL Sbjct: 855 LAGESLDNHRAVARSRGELPPGECGTITYDTLASAASDFAEQVAAATVGAPLPPLEIDLE 914 Query: 947 CNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRL--FLRKDG 1004 ++ G + ++ P+GL+ +R + L +++W+EH+ ++ G R L D Sbjct: 915 FKESRLVGRIERIWPEGLVHYRYAKLKAKDRLRIWIEHICLTSAAPTGYPRTASLLASDV 974 Query: 1005 EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 P++ AL L QL+ YR GMSAPL P+S + + D + A L Sbjct: 975 TVAIAPVSDSLAL--LEQLLTIYRRGMSAPLPFFPKSALEYARKANDPKKAA-----KAL 1027 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTP 1099 AR K + G+ GE +D +YQR + P Sbjct: 1028 GDARKK----WHGSEDYPGEKEDPYYQRCFGNEEP 1058 >UniRef50_A3QEU7 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Shewanella RepID=A3QEU7_SHELP Length = 1192 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1184 (35%), Positives = 638/1184 (53%), Gaps = 123/1184 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERL----DDPFEPEMILVQSTGMAQWLQMTLSQKFGI 56 ML + SNR+ EAL E + + P E ILVQS GM+ WL++ ++++ + Sbjct: 1 MLYLVQSNRM---EALAELLANELQTPLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQV 57 Query: 57 AANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT 116 AA ++FPLP+SFIW + ++LP++PKE+AF K +M+WKLM LLP LL +E F L +YL Sbjct: 58 AAALEFPLPSSFIWQLCHQLLPDVPKENAFTKPAMTWKLMELLPGLLSQEVFAPLANYLK 117 Query: 117 DDS--------DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-----LVEGLGEAQA 163 DD+ KLFQL S+ AD+FDQYLVYRPDW+ WE G L Q Sbjct: 118 DDAILTDSAAPHSLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKERPLDANQQ 177 Query: 164 WQAPLWKALVEYTHQ-LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPV 222 WQ+ LW+ L+ Y H L Q R+HRANL+Q + L LP R+F+ GIS++ P Sbjct: 178 WQSLLWRELIHYNHHTLNQSRYHRANLHQALFDALSDPLCDLSKLPPRLFVFGISSMAPQ 237 Query: 223 YLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSEN 282 L+ L L K I++ +L +PC++YWGDI DP KL R + ++L + Sbjct: 238 TLEVLYFLAKRIDVVMLNLSPCQHYWGDIVDP----KLRARMALQYGDKQQLAI------ 287 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDL---ESSQELDAFVDVTPDNLLHNIQ 339 + + + +VGNPLLA+ GK+GR+ + L+ +L +++ + + D ++LLH +Q Sbjct: 288 -----DWESKLEVGNPLLANNGKMGRELLDLILELPENDTNFNFECYQDPGSNSLLHGVQ 342 Query: 340 SDILELENRA-VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 DILEL R G + E + + +R L D S+T CHSP RE+E LHD LL L Sbjct: 343 QDILELCTRGETLGPDAELYLTTKGRRVLKIDDDSLTLRSCHSPLRELETLHDHLLEQLS 402 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458 + L P+DI+VM+ D+ +Y+P+I AVF S D ++PYAI+DR A Q P++ +F+ LL Sbjct: 403 QSDGLAPKDIVVMMPDVAAYAPYIDAVFASKRGDHFIPYAIADRGAAQESPLINSFLHLL 462 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 L SRF D+L +L+VP + RFD+ ++ L +R+W+ ++G+RWG D + + +LPA Sbjct: 463 GLNKSRFALTDILGILEVPAVMRRFDLDDDDLLLIRRWLEQAGVRWGRDQHSRQAQQLPA 522 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 ++W FG+ R++LGY+ + L G A+ +G L + + ++ + L Sbjct: 523 FEHNSWAFGIKRLILGYSFSDEAPIYHDSLALPGVEGQSAQALGKLLNFIEAIDEFNLAL 582 Query: 579 AQERPLEEWLPVCRDMLNAFF-LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 + PL + + ++ F+ D E L+ Q + E QY + L ++ Sbjct: 583 GEHCPLSVRITQLQTLVETFYDCVDEELSQKQELL-QAITRLSEELTATQYQSELELEVM 641 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 ++ + L + R+ QR+LAG VN CTLMPMRSIPF +VCLLGMNDGVYPR P+GFDL+ Sbjct: 642 QNWFTRHLTESRVGQRYLAGSVNFCTLMPMRSIPFMLVCLLGMNDGVYPRVQHPVGFDLV 701 Query: 698 SQK-PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 +Q+ P++GDRSRR DDRYLFLEAL+SA+++LYISYIG S +DNSER PS+LV ELI+Y Sbjct: 702 AQEGPRKGDRSRRLDDRYLFLEALLSAREQLYISYIGHSERDNSERIPSMLVSELIEYC- 760 Query: 757 QSHYLPGD-----EALNCDES--------EARVKAHLTCLHTRMPFDPQNYQPGE----- 798 Q YLP + + N D++ E + L PFD + Y E Sbjct: 761 QLCYLPENCAHLLKGSNADDTSTADIAKIELAILDQLIITMPLQPFDERLYLADESEGAE 820 Query: 799 -----------RQSYAREWLP-AASQAGKAH-----------SEFVQPLPFTL------P 829 RQSY+ +W P A ++ K H F++ P +L Sbjct: 821 CEGAKSEPRRLRQSYSEQWCPRALTEQDKQHDGEQGAKPASAGHFIEA-PLSLVADEDKG 879 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 E + L L RF+ +P + FF L+++ + EPF L LSRYQ+ L+ V Sbjct: 880 EPLELSALIRFYRNPAQYFFNRTLKLDLNLSIQADENDEPFALNPLSRYQLQSTLIEDAV 939 Query: 890 EQDD---AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR-QPGQSMEIDL 945 + D + L R R +G LP F ++ + +++ L R + + + + +IDL Sbjct: 940 KSGDERPSSELLERLRLSGQLPLAPFDDLLLKQYQHDIRALVGRTLYLQGESSHTQDIDL 999 Query: 946 ACN---GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG-------- 994 + + G + V GL+ +RP + ++++L HL AS + Sbjct: 1000 LLSDSAATALVGRIDGVSAKGLVNYRPGTANARDLIRVYLRHLCLNASVSDNSDVERHEA 1059 Query: 995 ---ESRLFLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCY 1050 + +L G + F P+ EQAL+ LS E Y +G S PL +P + A++ Sbjct: 1060 TPWQRHSYLLDIGHFHAFAPITPEQALNQLSLWAEHYHQGQSQPLPFMPRTAFAYV---- 1115 Query: 1051 DAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 +A+ + + L A+ ++L + N+ GEG + YQRL+ Sbjct: 1116 EAEGEHI----EKLIAAQPQWLDE-QSNL---GEGQEAHYQRLF 1151 >UniRef50_B8E565 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Shewanella RepID=B8E565_SHEB2 Length = 1274 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 424/1262 (33%), Positives = 653/1262 (51%), Gaps = 180/1262 (14%) Query: 1 MLRVYHSNRLDVLEA-LMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML++ SN+++VL A L ++ + E ILVQS GM+ WL++ ++++ GIAA Sbjct: 1 MLKLIQSNQMEVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 ++FPLP+SF W + +LP++PK++AF K +M+WKLM LLP++L+ + F LRHYL + Sbjct: 61 LEFPLPSSFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDAFGPLRHYLGNTL 120 Query: 120 DKR----------------------KLFQLSSKAADLFDQYLVYRPDWLAQWETGH---- 153 D R KL+QL + AD+FDQYLVYRPDW+ WE Sbjct: 121 DNRSTTNSADTSEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPES 180 Query: 154 LVEGLGEAQAWQAPLWKALVEYTH-QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVF 212 L + L E Q WQ LW+AL+ + +L Q +HRANL+ I L + T LP R+F Sbjct: 181 LTKPLNEDQRWQPILWRALIAFNRDELNQSHYHRANLHSDLIAALNNPDTSLAQLPQRLF 240 Query: 213 ICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLT-----RQRRH 267 + GIS++ P L+ L L I++ +L +PC++YWGDI DP A++ RQ Sbjct: 241 VFGISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAE 300 Query: 268 SFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ---ELD 324 +ED+ +VGNPLLA+ GK+GR+ + +L +L + D Sbjct: 301 LWEDK--------------------LEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDD 340 Query: 325 AFVDVTPD--------NLLHNIQSDILELEN-RAVAGVNIEEFSRSDNKRPLDPLDSSIT 375 + + D ++LH +Q DILE++ V G + E + +N+R L D SI Sbjct: 341 VYCEPCDDPNDPHSHASMLHGVQYDILEMQTLDRVLGPDAELYQNVENRRLLKRDDQSIR 400 Query: 376 FHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYL 435 CHSP REVE LHD LL +L LTP+DI+VM+ D+ +Y+P+I AVF + Y+ Sbjct: 401 VKSCHSPLREVETLHDHLLELLSNHADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYI 460 Query: 436 PYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQ 495 PYAI+DR A Q P++ +F++LL + SRF D+L++L+VP + RF + ++ L+ +R+ Sbjct: 461 PYAIADRGAAQESPLINSFLNLLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRR 520 Query: 496 WVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSG 555 W++E+G+RWG D+ + + +PA Q++W FG+ R++LGYA+ +Q L G Sbjct: 521 WLDEAGVRWGRDEQSRLKQGVPAFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEG 580 Query: 556 LIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQ 615 A+ +G L + + L+ + LA + L ++L+AF+ D + + I Sbjct: 581 QSAQALGKLLNFIEVLDETAQILALPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDA 640 Query: 616 WQAIIAEGLGAQY-------------------------GDAVPLSLLRDELAQRLDQERI 650 A+ E L A G ++ + +L+ QRL + R+ Sbjct: 641 IAALEQELLSAGKPLDTSPLAFSLDISPLAPLAQQSISGLSLSIEVLQQWFNQRLTESRV 700 Query: 651 SQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ-KPKRGDRSRR 709 QR+LAG VN CTLMPMRSIPFKVVCLLGMNDGVYPR P+GFDLM+ ++GDRSRR Sbjct: 701 GQRYLAGSVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRR 760 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP------- 762 DDRYLFLEAL+SA+++LYISYIGRS +DNSER S+LV ELI+Y Q YLP Sbjct: 761 LDDRYLFLEALLSAREQLYISYIGRSERDNSERIASMLVSELIEYC-QLCYLPETLLAQS 819 Query: 763 --GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ----------------------PGE 798 ++ +++E + + PFDP+ YQ G Sbjct: 820 QKASSPIDPEDAEKALYNAIVSHQPLQPFDPKLYQAAVKSDDENSSNIDGSSISQHKSGI 879 Query: 799 RQSYAREWLPAASQAGKAHS-EFVQPLPF---------TLPET---------------VP 833 QSY+++W P + A H+ F+ ++P+T V Sbjct: 880 GQSYSQQWCPPNADAAGTHAGRFIGAQTRIMLEADEQDSMPDTEAQPASVREQQQSKQVD 939 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 + L RF+ +P + FF L+V+ + EPF L L RY + QLL+ + Q Sbjct: 940 VSALIRFFRNPAQYFFNRTLKVDLSLNIQADDNDEPFSLNALERYMLQAQLLDDAIGQGL 999 Query: 894 AE---RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL----- 945 E L +R +A+G LP F ++ +++ L R + + S D+ Sbjct: 1000 TEPDIELIKRLKASGSLPMQPFDDLLLRQYQHDIKPLIGRTLFLKGEQTSSHADIKLVFD 1059 Query: 946 ------ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLF 999 V + G + + P GL+ +RP ++L+L HL A G S + Sbjct: 1060 LPITAGKSQQVLLQGRIDDISPKGLVNYRPGSAHGRDVLRLYLRHLCLMAMGHTHAS--Y 1117 Query: 1000 LRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAML 1058 L G + P+ AE+A L+ L+ + +G PL +P + A++ +C Sbjct: 1118 LLDMGHFHAIAPITAERAHALLADLLVLFYQGQQYPLCFMPRTSLAYV-SCEG------- 1169 Query: 1059 DDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW---RQLTPETMEAIVEQSQRFLLP 1115 + D LQ+A ++L E + + GEG++ YQRL+ R + ++ A+ E+ R ++ Sbjct: 1170 EHDERLQQALPEWLD--EQSQL--GEGNEPHYQRLFSFPRDFSEDSFGALAERIYRPMVS 1225 Query: 1116 LF 1117 L+ Sbjct: 1226 LY 1227 >UniRef50_B0BTG3 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Pasteurellaceae RepID=B0BTG3_ACTPJ Length = 1114 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 389/1069 (36%), Positives = 586/1069 (54%), Gaps = 87/1069 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M V+ S +L L AL+ + + + +PFEPE +LVQS GMAQWLQM ++ + G+AA+ Sbjct: 1 MFTVFFSQKLSSLAALLIRLQQNDPNPNPFEPETVLVQSVGMAQWLQMQIADQTGVAAHY 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FP P SF+W + + PE+PKE+ F ++S++W+LM L+P+ LE+ +F L YL D+ Sbjct: 61 QFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEKAEFESLNLYLNKDAR 120 Query: 121 KR--KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA--------------- 163 + KL+QL+ K ADLFDQYLVYRP WL WE+ + L E A Sbjct: 121 QYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNERDILAN 180 Query: 164 --WQAPLWKALVEYTHQLGQPRW----HRANLYQRFIETLESATTCPPG-LPSRVFICGI 216 WQ+ LW AL+E HRA L Q++ E L++ T LP R+F+ GI Sbjct: 181 LRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPKRIFVFGI 240 Query: 217 SALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL 276 S+LP L L+ L +H E++L F +P + YW + + L KL + R+ S +D + L Sbjct: 241 SSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALK-RQLSQQDLDALL 299 Query: 277 FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLH 336 EQ GN LLA WGK GR+++ L + E ++ F + D+ L Sbjct: 300 --------------AEQ--GNQLLAMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLI 343 Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 +++ IL N G L D SI H CHS REVEVLH++LL M Sbjct: 344 KLKNAILNFNNEQRFG--------------LAEQDRSIQIHACHSVMREVEVLHNQLLQM 389 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPA--DRYLPYAISDRRARQSHPVLEAF 454 E +PTL P+DIIVM ADID Y+P+I AVF RY+P+ +SD++ P++ +F Sbjct: 390 FERNPTLAPKDIIVMSADIDKYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASF 449 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWG--IDDDNVR 512 + LL+L +S F +E +L LLDV L RF++ E+ L+ LR WVN+ GIR+G I D+ + Sbjct: 450 LMLLNLKESDFSAESLLDLLDVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQ 509 Query: 513 ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 + W GLTR+LLG ++++ G WQ + ++ES GL A LVG LA + L Sbjct: 510 -------NHNAWENGLTRLLLGTSLKAESGIWQDSIAFNESYGLSATLVGFLAKFIENLT 562 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 W + Q+ LEEW + ++ F+ E+ A+ L+ + + + A++ +++ Sbjct: 563 AWYEFIQQDHTLEEWKARIQKLIGEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESI 622 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 + ++R L +L+Q++ S +FLAG VN CTL+PMR+IPFKVVCLLGMN+ +PRQ + Sbjct: 623 GIEIIRLLLEDKLNQQQSSLQFLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVN 682 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FDLM PKRGDR+RRDDDRYLFLEAL+SAQ+ Y+SYIG+S DN +R PSVLV +L+ Sbjct: 683 SFDLMQYAPKRGDRARRDDDRYLFLEALLSAQEIFYLSYIGQSTTDNKQRLPSVLVSQLL 742 Query: 753 DYIGQSHYLPGDEALNCDE----SEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLP 808 DY+ + +L L E SEA + F P+N+ P + SY +EWL Sbjct: 743 DYLAE--HLTEQARLQASEKDSFSEALFWQKMVVQQPLTVFSPKNFTP-QYGSYDKEWL- 798 Query: 809 AASQAGKAHSEFVQP---LPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 Q + ++F+ L +P + LE L F ++P++ FF +L V FR ++ I Sbjct: 799 -LEQQHEPLADFLNKSFDLKAEIPTEINLEDLIAFVSNPIKYFFNHQLGVYFRNDEESIA 857 Query: 866 DTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 ++E F L L YQ+ QL+ +E + E F++ + G+LP F ++ + + Sbjct: 858 ESEKFSLSDLDDYQLRDQLVT--LEPAEREAFFKQEQLKGNLPIANFAKVSLQDLDDSIN 915 Query: 926 QLADRVIACRQPGQSMEIDLACN----GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLW 981 +L + ++ +EI+ +++ G + D ++ W+ S L ++LW Sbjct: 916 ELRELILPYLGESDILEIERLFEVEQLKIRLFGNIRNKFADEIVFWKVSSLKDKDYIRLW 975 Query: 982 LEHLVYCASGGNGESRLFLRKDGE---WRFPPLAAEQALHYLSQLIEGY 1027 + +L+ A G N E R + +RF ++AEQA L I Y Sbjct: 976 IYYLLIQAQGLNLELTAIARSKEKAEIFRFNQVSAEQAFSQLQTYISAY 1024 >UniRef50_B9CWC7 Exodeoxyribonuclease V gamma chain n=2 Tax=Actinobacillus minor RepID=B9CWC7_9PAST Length = 1085 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 382/1021 (37%), Positives = 558/1021 (54%), Gaps = 99/1021 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLD---DPFEPEMILVQSTGMAQWLQMTLSQKFGIA 57 M VY+SN+L AL E ++ ++++ DPF+PE ILVQS GMAQWLQM +++ G+A Sbjct: 1 MFTVYYSNQLT---ALAEMLIHHQKVNPNEDPFQPETILVQSVGMAQWLQMQIAESMGVA 57 Query: 58 ANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 N +FP P SF+W + + P +PKE+ F + M+W+LM ++P +LER +F LR YLT Sbjct: 58 GNYEFPFPTSFLWQQYRLLFPHLPKENIFERGVMAWRLMRIIPAVLERPEFQGLRAYLTH 117 Query: 118 DS--DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG----------------HLVEGLG 159 D D KL+QL++K ADLFDQYLVYRP WL WE G +L G+ Sbjct: 118 DKEQDSLKLYQLATKIADLFDQYLVYRPHWLVHWENGQWQEVVREIQIQPFSTNLQTGIQ 177 Query: 160 EAQAWQAPLWKALVEYTH----QLGQPRWHRANLYQRFIETLESATTCP-PGLPSRVFIC 214 E WQ+ LW L+E T +L HRA L Q+F E LE T LP R+F+ Sbjct: 178 ENVHWQSLLWNLLIEDTRKDYDELLFTTSHRAYLQQKFFEKLEDLTEEEYKKLPKRIFVF 237 Query: 215 GISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDREL 274 GIS+LP L L ++ ++HL F NP + YWGD + A L K+ +Q+ E ++L Sbjct: 238 GISSLPTTQFATLLKLSEYCDVHLFFLNPSQMYWGDSIENAALEKMALKQQLSETEIQQL 297 Query: 275 PLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL 334 A Q GN LL+ WGK GRD+ L++ S + ++ F + ++ Sbjct: 298 L-------AQQ----------GNQLLSMWGKQGRDFFDQLAEY-SPEPIELFFENDQESN 339 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD-PLDSSITFHVCHSPQREVEVLHDRL 393 L ++ IL +DN L+ D+SI H CHS REVEVL ++L Sbjct: 340 LSRLKQAIL----------------NNDNPSYLELENDNSIQIHNCHSAMREVEVLQNQL 383 Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG--SAPADRYLPYAISDRRARQSHPVL 451 L + E++P L+P+DIIVM ADI+ Y+P+I AVF +RY+P+ ISD++ Q PV+ Sbjct: 384 LRLFEQNPHLSPKDIIVMAADIEQYAPYINAVFSRYGREDNRYIPFTISDQKISQVDPVI 443 Query: 452 EAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV 511 +F+ +L L DS F +E +L LL+V + +F E L LR W+ ESGIR + Sbjct: 444 SSFLVMLKLRDSTFSAEALLDLLEVEAIGQQFGFNREDLTCLRHWIKESGIRSTL----T 499 Query: 512 RELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQL 571 E E ++W GL R+LLG ++ G WQ+ + ++ES GL AE VG LA + +L Sbjct: 500 IEQENGWQNYNSWENGLDRLLLGSCLKEENGIWQNTIAFNESYGLSAERVGKLAEFIEKL 559 Query: 572 NIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 W + P+ W D++ A + + + A+ LI+Q+ +A+ A L A++ + Sbjct: 560 TAWSVLSLESHPISTWKQALEDLVKAVYQENDASNDALFLIQQELEALEALVLQAKFDEP 619 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 V ++ L RL+ + F+ G VN CTL+PMR+IPFKVVCLLGMN+ +PRQ Sbjct: 620 VAFEVIERALQDRLNSQSHVMHFMTGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQPVI 679 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 FDLM P++GDR+RR+DDRYLFLEAL+SA++ YISY+G+S+ + ER PSVLV + Sbjct: 680 NSFDLMQYHPRKGDRARREDDRYLFLEALLSAEEVFYISYVGKSLVKDEEREPSVLVSQF 739 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAAS 811 +DY+ + + L ++ H F +N++ G SY +EWL A Sbjct: 740 VDYLAKYYSLSLEQE-----------------HPMNAFSERNFKSG-YVSYHKEWLEFAQ 781 Query: 812 QAGKAHSEFVQPLPFT--LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 QA ++H F + LP LP+ + L+ L F P + FF L + FR ED EI DTE Sbjct: 782 QAVESHDFFAKSLPENSELPKEIELDELIAFIQSPTKQFFTRNLGIYFREEDDEIEDTEH 841 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L L YQ+ QLL E F + G++P FG++ TQ + ++ D Sbjct: 842 FSLSKLDEYQLTAQLLTTSSEMTSP--FFEKETLKGNIPVLNFGKL---TQTELTNRIQD 896 Query: 930 -RV-IACRQPGQS--MEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 RV +A G+S + L C V++ G LP + ++ WR L ++LW+ L Sbjct: 897 MRVELAEYLKGESDILPFSLQCTQVELVGNLPNLFGQEIVLWRVGKLRDKDTIKLWIYFL 956 Query: 986 V 986 + Sbjct: 957 I 957 >UniRef50_Q080D9 Exodeoxyribonuclease V, gamma subunit n=6 Tax=Shewanella RepID=Q080D9_SHEFN Length = 1270 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 400/1239 (32%), Positives = 626/1239 (50%), Gaps = 171/1239 (13%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++VL E L + + R E +LVQS GM+ WL++ +++ GIAA Sbjct: 1 MLTLIQSNQMEVLSEQLAKLLAIRLDNVSLLASEHVLVQSPGMSTWLRLEIAKHNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT--- 116 + FPLP+SF W + +LP++PK++AF K +M+WKLM LLP LL+ DF+ L+ YL+ Sbjct: 61 LSFPLPSSFTWQLCHDLLPDVPKDNAFTKAAMTWKLMDLLPSLLDNPDFSPLKQYLSPQV 120 Query: 117 ------------------------------------------DDSDKRKLFQLSSKAADL 134 D KLFQL + AD+ Sbjct: 121 DTTTDIAATDILDTDVDANTNTDIETETNIHTANSHAISQLNQSHDAIKLFQLCGRIADI 180 Query: 135 FDQYLVYRPDWLAQWETGHLVE------GLGEAQAWQAPLWKALVEYT-HQLGQPRWHRA 187 FDQYLVYRP+W+ WE + L E Q WQ LW+ L++Y H L +HRA Sbjct: 181 FDQYLVYRPEWILAWEQNQPLSSIDNRLALDENQQWQPILWRTLIDYNQHHLHASHYHRA 240 Query: 188 NLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYY 247 NL+ I TL + T LP+R+++ GIS++PP L L L I++ +L +PC++Y Sbjct: 241 NLHADLIATLANPDTDLSMLPARLYVFGISSMPPQTLDVLYHLASRIDLIMLSLSPCQHY 300 Query: 248 WGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLG 307 WGDI +P A++ + D++ + + +VGNP+LA+ G++G Sbjct: 301 WGDIIEPKTRARMALQYANKKQLDQDW---------------EDKLEVGNPILANNGQMG 345 Query: 308 RDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDILELENRAVA-GVNIEEFSRSDN 363 R+ + LL L D +V+ P+NLLH +Q DIL++E G N + Sbjct: 346 RELLDLLLSLPPEHTDFGYDCYVEPEPNNLLHGVQYDILQMETLGQPLGPNSSVYQDIHA 405 Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 +R L P D SIT CHS REVE LHD LL +L + L+P+DI++M+ D+ +Y+P+I Sbjct: 406 RRTLLPSDDSITLRSCHSALREVETLHDHLLELLSNNSDLSPKDIVIMMPDVAAYAPYID 465 Query: 424 AVFGSA-----------PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 AVFG+A D Y+PYAI+DR A Q P++ +F+SLL++ SRF D++ Sbjct: 466 AVFGTANSQYFADKNPQKGDYYIPYAIADRGAAQESPLINSFLSLLNINQSRFGLTDIIG 525 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 +L+VP + RF + ++ L +R+W++++ +RWG + +L + Q++W FG+ R++ Sbjct: 526 ILEVPAILRRFQLDDDELSLIRRWLDDANVRWGRSEQTRSQLGVQPFTQNSWAFGIKRLI 585 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LGYA ++ L G ++ +G L + L ++ + A + E L + Sbjct: 586 LGYAFNDDADIYRETLMVQGIEGQSSQALGKLLNFLETIDTYFNLFANDYSTAERLEQLQ 645 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 +L + + + I + E A + V + +L+ QRL + R+ Q Sbjct: 646 QLLADCYDTTDDEREQIQAIRDALVTLDTELESAGHQGQVDIEVLKQWFNQRLTESRVGQ 705 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ-KPKRGDRSRRDD 711 R+LAG VN CTLMPMRSIPFKVVCLLGMNDGVYPR P+GFDLM+ PK+GDRSRR D Sbjct: 706 RYLAGSVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHFGPKKGDRSRRLD 765 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEA----- 766 DRYLFLEAL+SA+++LYISYIG S +DN+ER S+LV EL++Y S+ + Sbjct: 766 DRYLFLEALLSAREQLYISYIGHSERDNAERIASMLVSELVEYCQLSYLPQSLQQQLEQQ 825 Query: 767 --LNCDESEARVKAHLTCLHTRMPFDPQNYQPGE---------RQSYAREWLPAASQAG- 814 +N D+++ V A L PFD + ++ + S+ +W P + A Sbjct: 826 AEINLDDADKAVLAQLIQAQPLQPFDAKLFRETPLSAHSVNKLQHSFNAQWCPPPANATI 885 Query: 815 KAHSEFVQPLPFTLPET------------------VPLETLQRFWAHPVRAFFQMRLQVN 856 H F Q LP + + + L L RF+ +P + FF L+V+ Sbjct: 886 NNHIFFEQALPLSAEQADEVFAHTHINSEGIKVVELELSALIRFYRNPAQFFFNRSLKVD 945 Query: 857 FRTEDSEIPDTEPFILEGLSRYQINQQLL-NALVEQDDAE--RLFRRFRAAGDLPYGAFG 913 + + EPF L L RY + ++L NA+ Q D+ L + + +G+LP F Sbjct: 946 LSLDIQADDNDEPFSLNALERYLLQSRMLDNAIEHQLDSPDFELLSKLKTSGELPMAPFD 1005 Query: 914 EIFWETQCQEMQQLADRV--IACRQPGQSMEID--------------LACNG-------- 949 ++ +++ L +RV + +Q ++ +D L+ G Sbjct: 1006 DLLINQYLRDISPLINRVQFLQDQQAMHTLNVDLNFDLPMQDFPAYALSVQGLPEQADTT 1065 Query: 950 ------VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA-----SGGNGESRL 998 V + G + + P GL+ +RP ++++L HL A + G G+++ Sbjct: 1066 HSSIVRVNLVGRIDDILPKGLVNYRPGTAHGRDFIRVYLRHLCINAMANSSTSGMGKNQF 1125 Query: 999 -FLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 +L G + F P+ AEQA L + I G+ +G + PL +P++ A+++T Sbjct: 1126 SYLLDIGHFHAFAPITAEQAQAQLMRFISGFIQGQTQPLCFMPKTAFAYVET-------- 1177 Query: 1057 MLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR 1095 D ++ K Q ++ GEG D QRL+ Sbjct: 1178 ----DGDHEEKLLKAQQKWDDGQNQFGEGHDPHNQRLFH 1212 >UniRef50_Q12LP5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Bacteria RepID=Q12LP5_SHEDO Length = 1375 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 421/1258 (33%), Positives = 624/1258 (49%), Gaps = 230/1258 (18%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++VL E L + + + E +LVQS GM+ WL++ +++ GIAA Sbjct: 1 MLTLIQSNQMEVLSEQLAKLLATPLDETNLLASEHVLVQSPGMSTWLRLEVARHNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD- 118 ++FPLP+SFIW + +LP++PK++AF K +M+WKLM LLP+LL+ DF L +YLT + Sbjct: 61 LEFPLPSSFIWQLCHTLLPDVPKDNAFTKPAMTWKLMDLLPRLLDDADFAPLANYLTTEL 120 Query: 119 -------------------------------------SDKRKLFQLSSKAADLFDQYLVY 141 D K +QL S+ AD+FDQYLVY Sbjct: 121 ATELAPELAPELATEIKPDQAAAAPDSRSQAIVLSAAQDAIKRYQLCSRIADIFDQYLVY 180 Query: 142 RPDWLAQWETGHLVEGLG------EAQAWQAPLWKALVEYTH-QLGQPRWHRANLYQRFI 194 RP+W+ WE + L ++Q WQ LW+AL++Y +LG +HRANL++ + Sbjct: 181 RPEWILAWEQNKPLTSLDNKLKLDDSQLWQPKLWRALIDYNRDELGASPYHRANLHESLL 240 Query: 195 ETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDP 254 E L + LP R+F+ GIS++PP L+ L L I + +L +PC +YWGDI DP Sbjct: 241 EALADEQSSVANLPQRLFVFGISSMPPQTLEILHQLAGRIPVVMLALSPCEHYWGDIIDP 300 Query: 255 AYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLL 314 A++ + + D + Q + S E VGNPLLA+ GKLGR+ + L+ Sbjct: 301 KTRARMALQ-------------YADKKQLAQDWESSLE--VGNPLLANNGKLGRELLDLM 345 Query: 315 --------------------SDLESSQELDAFVDVTPDN--LLHNIQSDILELENRAVA- 351 +L S E DA TP N LLH +Q DIL++E V+ Sbjct: 346 LALPSEHTDFGYDCYVKPWDINLHSDDENDAVPVNTPQNAKLLHGVQYDILQMETLGVSL 405 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 G + ++ N+R L P D SIT CHSP REVE LH+ LLAML P L P+DI+VM Sbjct: 406 GPDAALYNNIPNRRLLQPDDDSITIRTCHSPLREVETLHNHLLAMLSRCPQLHPKDIVVM 465 Query: 412 VADIDSYSPFIQAVFGSAPA------------DRYLPYAISDRRARQSHPVLEAFISLLS 459 + D+ +Y+P+I AVFG+A A + Y+PYAI+DR A P++ +F+SLL+ Sbjct: 466 MPDVAAYAPYIDAVFGTANAEASGIDGARQQGNSYIPYAIADRGAAAESPLINSFLSLLN 525 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + SRF +++ +L+VP + RF ++ + L +R W++E+ +RWG D+ + L LPA Sbjct: 526 INQSRFALTEIMGILEVPAILRRFKLSGDELSQIRLWLDEANVRWGRDEHSRAALNLPAF 585 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 Q++W FG+ R++LGYA +Q L G A+ +G L + L L+ +R A Sbjct: 586 EQNSWAFGIRRLILGYAFHDGAPLYQDTLLVPGLEGQSAQALGKLMNFLETLDDYRALFA 645 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 L + +L F D + + I + + E GA + + + +L+ Sbjct: 646 APCTTSSRLFELQTLLQDIFEADDDEREEIQAINEAIAKLSEELNGAGHQGMLDIEVLKI 705 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 QRL + R+ QR+LAG VN CTLMPMRSIPF +VCLLGMNDG YPR P+GFDLM+ Sbjct: 706 WFNQRLSESRVGQRYLAGSVNFCTLMPMRSIPFNMVCLLGMNDGDYPRVQHPVGFDLMAH 765 Query: 700 -KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 K+GDRSRR DDRYLFLEAL+SA+++LYISYIG+S +DNSER PS+LV ELI+Y Sbjct: 766 FGAKKGDRSRRADDRYLFLEALLSAREQLYISYIGQSERDNSERIPSMLVSELIEYCQLC 825 Query: 759 HYLPG--------DE----ALN--CDESEARVKAHLTCLHTRMPFDPQNYQPGE------ 798 + P DE AL+ CD++ + A L PFDP+ ++ + Sbjct: 826 YLTPEMKEQLSKLDEEQILALSKPCDDA---LLARLIQAQPLQPFDPKLFRDNQALGIAL 882 Query: 799 RQSYAREWLPAASQAGK--------------------------AHSEFVQPLPFTLPETV 832 +QSY +W P ++ A K + F+ P +LP+++ Sbjct: 883 QQSYHSQWCPPSTPANKTTTAPASAAASGSASAETSVNTWVMNSSGRFLGP-NQSLPQSI 941 Query: 833 --------------------------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD 866 L L RF+ +P + FF L+V+ + + Sbjct: 942 LADSLWPQWHSDLEERAVFAATDAELELSALLRFFRNPSQFFFNRSLKVDLSLDIQADDN 1001 Query: 867 TEPFILEGLSRYQINQQLLNALV-----------EQDDAER-----LFRRFRAAGDLPYG 910 EPF L L RY + +LL+ ++ DD ++ L + +AAG LP Sbjct: 1002 DEPFSLNALERYLLQAKLLDKILAPDLDTSDLDNNGDDRKKTPEASLTQALKAAGSLPMA 1061 Query: 911 AFGEIFWETQCQEMQQLADRVIACR-----------------QPGQ----SMEI------ 943 F E+ ++M L RV R PGQ S+E+ Sbjct: 1062 PFDELLLSQYQRDMAPLIGRVQFMRGEQCEPRSLNLELEFSFSPGQILANSLELSEISLE 1121 Query: 944 -------DLACNGVQ------ITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS 990 +LA N Q + G + + P GL+ +RP ++++L HL AS Sbjct: 1122 PALINSPELAHNAAQAPLKLTLLGRIDDILPKGLINYRPGAAHGRDLVRVYLRHLCLNAS 1181 Query: 991 GGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKT 1048 G S L L F P+ A L I Y +G + PL +P + A+++ Sbjct: 1182 GQQQTSYL-LDMAQFHSFAPITPAHATAQLKAFILAYIQGQTRPLCFMPRTAFAYVEA 1238 >UniRef50_Q3ASJ4 DNA helicase/exodeoxyribonuclease V, gamma subunit n=8 Tax=Chlorobiaceae RepID=Q3ASJ4_CHLCH Length = 1127 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 404/1141 (35%), Positives = 604/1141 (52%), Gaps = 86/1141 (7%) Query: 2 LRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 L +Y SNR+++L ++L E + R+ L FE E+I+VQS GM +WL M L+ +FG+ AN Sbjct: 33 LHLYTSNRMEMLVDSLAEVV--RQPLASVFEHEVIVVQSRGMQRWLSMELAGRFGVWANG 90 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +P P + + ++F ++LP + + AF K+ MSW++M LLP LLE +F LR Y DDSD Sbjct: 91 RYPFPNAMVQELFKQLLPSVAQSDAFKKEVMSWRVMRLLPHLLEMAEFLPLRRYAADDSD 150 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 KLFQLS K AD FDQY ++RPD LA WE +AWQ LW+ALVE Sbjct: 151 GLKLFQLSEKIADTFDQYTLFRPDMLALWEA--GGGVAEGGEAWQPLLWRALVEGAG--- 205 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HR L + L +++ LP R+ + GIS LP +L+ A+ + E+HL Sbjct: 206 ---LHRGQLRELLFRQLSRSSSKISELPERITLFGISYLPQFHLELFAAVARLTEVHLFL 262 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +P + YWGDI +A+L A Q S+G NPLL Sbjct: 263 LSPTQEYWGDIVSRKAMARL--------------------SEAEQALRSEG-----NPLL 297 Query: 301 ASWGKLGRDYIYLLSDLESSQELDA--FVDVTP-DNLLHNIQSDILELENRAVAGVNIEE 357 AS G++GRD+ ++ ++ S + LD+ F D P D+LLH +Q DIL L+ AG Sbjct: 298 ASLGRIGRDFSEMVLEM-SDEALDSQEFYDDPPEDSLLHALQWDILHLQG---AG----- 348 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 + R L P D S+ H CH+P REVEVL+D +L +LE P ++ RDIIVM DI+S Sbjct: 349 -EMDETPRLLQPHDRSVQIHACHTPLREVEVLYDAILGLLEAHPHISLRDIIVMTPDIES 407 Query: 418 YSPFIQAVFGSA-------PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 YSP+I VFG+A LP++I+DRR + A + LL+L SR + + Sbjct: 408 YSPYIATVFGTAREAGKEGKGVVALPFSIADRRMMHEGEIASALLKLLALHGSRLTASML 467 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 L P ++ F E LR +R W+ SGIRWG+D+++ RE LPA H+WR GL R Sbjct: 468 FDFLASPPVSRAFGFDAEALRLIRGWIEGSGIRWGMDEEDRRERNLPAYRDHSWRAGLER 527 Query: 531 MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPV 590 +LLGYAM + +Q VLPY + +G AE++G A + L + R LE W Sbjct: 528 LLLGYAMPEEEQLFQGVLPYGDIAGSAAEMLGRFAEAVEALERFVSSSEPSRTLEAWRQQ 587 Query: 591 CRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERI 650 L FF PD ++E + + + G+ A + + + + L RL+++ Sbjct: 588 YAMWLTTFFAPDEDSEREFATLATLGEELAEYGINAGFEENISPLVFFTWLRSRLEEQEQ 647 Query: 651 SQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD 710 F+ G + C ++PMRSIPF+VV L+GMNDG +PRQ FDL++++P++GDRS R+ Sbjct: 648 GLGFMTGGITFCAMLPMRSIPFRVVMLIGMNDGAFPRQSRAPSFDLITRQPQKGDRSLRN 707 Query: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 +DRYLFLE+++SA++ LYISY+G+SI+DNSE PSVLV EL+D + ++ LP Sbjct: 708 EDRYLFLESILSARELLYISYVGQSIRDNSEIPPSVLVSELLDAVRRAFVLP-------- 759 Query: 771 ESEARVKAHLTCLHTRMPFDPQNY-QPGERQSYARE---WLPAASQAGKAHSEFVQPLPF 826 +E+ ++ HL H PF + + SY+ E L A+ Q+ +A + Sbjct: 760 -NESSIEQHLVVRHRLQPFHHDYFSEHSPLASYSSENYYALIASEQSLQAVPPIRSFIST 818 Query: 827 TLPE------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQI 880 L E TV LE L F+ +P F + RL + + D+EPF +E L RY++ Sbjct: 819 ALSEPTAEWRTVQLEQLLHFYDNPSAFFLEQRLGIKPEGLLLPLQDSEPFAVESLERYRL 878 Query: 881 NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV---IACRQP 937 Q+LL A + AE L F++ G LP GE+ + T QE+ A + +A Sbjct: 879 QQELLEAQLRGQPAEALLPLFKSRGMLPPAQHGELLFATVMQEVDDFAATLRQHLAGEVA 938 Query: 938 GQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGE-- 995 +E+D+ +I G L + + +LR+RP+ + V + W+EHL+ CA G Sbjct: 939 LAPLEVDIEVGEFRIVGRLDGIWANAMLRYRPARMKVRDRFRWWIEHLLLCALQPTGYPL 998 Query: 996 SRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQND 1055 + L DGEW +PP+ + +L+ L++ Y +G+ PL P S A++ DA + Sbjct: 999 TTHMLMSDGEWSYPPI--DNPHQHLTTLLQRYWQGLCEPLPFFPRSAYAFVLKGMDANHH 1056 Query: 1056 AMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLP 1115 LD + A ++ N +GEG D QR + + +E + P Sbjct: 1057 --LDVGKGIDAAYREWRDDTFTNR--KGEGSDSAIQRCFGAAANPFSDTFIELALELFTP 1112 Query: 1116 L 1116 + Sbjct: 1113 M 1113 >UniRef50_Q7NQR0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Chromobacterium group RepID=Q7NQR0_CHRVO Length = 1065 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 376/1009 (37%), Positives = 552/1009 (54%), Gaps = 85/1009 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNRL+ L L + + L DPF E ++VQS GM +W+ + +++K GIAANI Sbjct: 1 MLFLYQSNRLEQLGELFCGMTQAMPLADPFAAETVIVQSRGMGRWITLDVARKAGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DF LPA+F W + +V+P++P++SAF + ++W+L+ LLP L E F + HYL + Sbjct: 61 DFALPAAFAWRLMQKVMPDLPRKSAFVPEVLAWRLLALLPSL-SGEPFGPVLHYL--EGG 117 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + F+L+ K AD+FDQYLV+RPDW+ WE G L+ GLGE +AWQA LW+ L E Sbjct: 118 EAAAFELAGKIADIFDQYLVFRPDWIRAWEAGELL-GLGEDEAWQASLWRRLAE-----S 171 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 P HR + +F L+ P LP RV + GI++L P+YL ++ L + ++ L Sbjct: 172 DPGRHRVRMLDQFFADLK-----PEHLPPRVTLFGIASLAPMYLALVKRLSQLTDVCLFT 226 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPC YWGDI D L KL AG LF + G +PLL Sbjct: 227 LNPCEAYWGDIVDARRLLKL--------------------RQAGDLFATQG-----HPLL 261 Query: 301 ASWGKLGRDYIYLLSDLESSQELDA---FVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 +S GK GRD+ L+++ ELDA F D LL +Q DIL+L + Sbjct: 262 SSLGKQGRDFFELIAE---DAELDAKPLFAAPKGDGLLARLQRDILQLNDP--------- 309 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 S RP DP D+SI H CH P RE+E L DRLLAM DP L+P D+ V+ DI++ Sbjct: 310 ---SQLPRPFDPADASIEVHACHGPMRELEALKDRLLAMFAADPKLSPADVAVLTPDINA 366 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Y+P+I AVFG +PY+I+DRR + P+L F ++L L DSRF +++VLAL D P Sbjct: 367 YAPYIDAVFGRRDDAPNIPYSIADRRVEREQPLLSTFAAVLKLADSRFAADEVLALFDCP 426 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 L ARFD+ + L +++ WV ++GIRWG D + L LPA +TWR+GL R+LLG + Sbjct: 427 ALLARFDLADADLAFIQDWVRDAGIRWGRDAAHKASLGLPAEAAYTWRWGLDRLLLGTVL 486 Query: 538 ESA-----QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 A G + +LPY + G + E + A L+ +Q ++W Sbjct: 487 PPALAGDDAGLFAGLLPYTAAQGQLGETLARFAGFYDALDALADAWSQPAAPQQWAQRFH 546 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 + FL + + EAA+ L+ + + A +G V L++ RD L ++L +Q Sbjct: 547 QACDRLFLAEGDDEAALELLREALAELAENADLAGFGQPVGLAVARDWLLRKLSSSS-AQ 605 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 FL+G V C ++PMRSIPF+ +CL+GMNDG YPR P+ FDL+++ P+RGDRSRR DD Sbjct: 606 GFLSGGVTFCAMVPMRSIPFQALCLIGMNDGAYPRDERPVSFDLVARNPRRGDRSRRFDD 665 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEA++SA+ +LY+SY+G+S + PS LV EL+D + + C E Sbjct: 666 RYLFLEAILSARGRLYLSYVGQSARSGEPLPPSPLVSELLDTL----------SAMCGED 715 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQ--SYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 A A LT H PF P+ + G+ + S+ + A + + FV PLP Sbjct: 716 MA---ARLTLRHPLQPFSPKAFDGGDARLASFEPAFAAALAAPPAEPAPFVAPLPDEGAA 772 Query: 831 T-VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 T V L RFW +P RA+ RL + P EPF + + + + +QL+ A++ Sbjct: 773 TVVNLHDFIRFWQNPARAWLADRLALRVAYSGDAQPAREPFAMARDASHALRRQLVEAML 832 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ----PGQSMEIDL 945 + + +R AAG LP G G+ + + + + +LA R+ + P Q + +++ Sbjct: 833 HGKPPQPVRQRVAAAGLLPCGELGQAWLQEEGRASVRLAGRLPGALRGEALPPQPVHLEI 892 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG 994 A G + G L ++P+G L + ++ AQ + LWL HL+ CAS G Sbjct: 893 A--GFTLVGELYGLRPEGRLDFIVGKMNAAQRVALWLSHLILCASRPAG 939 >UniRef50_A1AQY6 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Desulfuromonadales RepID=A1AQY6_PELPD Length = 1061 Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust. Identities = 374/1053 (35%), Positives = 546/1053 (51%), Gaps = 70/1053 (6%) Query: 2 LRVYHSNRL-DVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 L + SNR+ +++EAL + + + L PF PE+++VQS GM +WL M L++ FG+ AN Sbjct: 3 LTICTSNRMENLVEALCDVL--KTPLSSPFTPEILVVQSKGMQRWLAMKLAETFGVWANC 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +P P +W++F++ PE+P S F+ + M+W++M LLP L R++FT L HYL D D Sbjct: 61 TYPFPNKVVWELFMKAFPELPDTSRFSPEVMTWRIMGLLPAFLGRQEFTPLNHYLDGDGD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K FQL+ K AD FDQY ++RP+ L WE G + WQ LW+ L T G Sbjct: 121 GLKKFQLAGKIADTFDQYTLFRPNMLLDWEGG-------KGGDWQELLWRELA--TADNG 171 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q HR + Q FI+ L LP R+ + GIS LP +L + KH + L Sbjct: 172 Q---HRGRIKQDFIKLLAQGHAEKESLPERIMVFGISYLPSYHLDIFTEIAKHTTVSLFL 228 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +PCR YWGDI +++ +R + E GNPLL Sbjct: 229 LSPCRQYWGDIVSAKQMSRRPPEERAYLEE-------------------------GNPLL 263 Query: 301 ASWGKLGRDYIYLLSDLES--SQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 AS GKL RD+ ++ + S + ++D ++D LL IQSDIL L R G Sbjct: 264 ASLGKLARDFSNMVVEAGSIATDDVDLYLDPGEGLLLEAIQSDILNL--RGTEG------ 315 Query: 359 SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 D+KR + P D S+ H CHSP RE+EVLHD LL +LE++ LTPRDIIVM DI++Y Sbjct: 316 --GDSKRRISPQDRSVQIHACHSPMREIEVLHDNLLFLLEQEKGLTPRDIIVMTPDIETY 373 Query: 419 SPFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 SP+I VFG + +P++I+DR + + + LL LP SR V +L Sbjct: 374 SPYISMVFGGCQDPLKKIPFSIADRTLAKEGQIASVILKLLELPGSRLSVTRVFDILQSA 433 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 ++ RFD+ + L +R W+ ++ IRWG D+ + L LP +++WR GL R++LGYAM Sbjct: 434 PVSRRFDLDIQELETVRSWIEDTRIRWGADESHRSSLGLPHYRENSWRAGLDRLMLGYAM 493 Query: 538 -ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 E + +LPYDE G + +G LA + ++ R LA +R L EW ML+ Sbjct: 494 PEEGDFLFHGILPYDEMEGDATQALGKLAEFVARIERLARDLAAKRTLTEWRDAITTMLS 553 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 F D + + I Q++ G A + + V L ++R LA RL +E FL Sbjct: 554 DFAAADDDLAHELASINGVVQSLEDLGAKAGFSETVDLVVIRSWLASRLGEEEKGLGFLT 613 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLF 716 G V C ++PMRSIPF+VVCL+GMND +PRQ P GFDL+++ P+ GDRS RD+DRYLF Sbjct: 614 GGVTFCAMLPMRSIPFRVVCLIGMNDAAFPRQSRPPGFDLIARNPQPGDRSLRDEDRYLF 673 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 LE L+SA+ Y+SY+G+S++DNS PSVLV E +D IG + + G+ L + V Sbjct: 674 LECLLSARTHFYLSYVGQSVKDNSAIPPSVLVSEFLDAIG-AGFTSGEMTLE----QRLV 728 Query: 777 KAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPET--VPL 834 +H +R FD + L A ++G+ PL E V L Sbjct: 729 TSHRLQAFSRSYFDATSGLFSYSAENCAALLDATQRSGEPALFITHPLKAAPEEMREVTL 788 Query: 835 ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDA 894 L RF+A+P + + RL++ + + D EPF +EGL Y INQ+LL ++ Sbjct: 789 AQLVRFYANPAKYLLENRLKIRLEEVSTPLDDREPFAVEGLEAYGINQELLEKRLQGGSV 848 Query: 895 ERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ----SMEIDLACNGV 950 L+ R G LP GE + E+ L + I R GQ + Sbjct: 849 HGLYATTRCRGILPPAQHGETVFADALAEVDNLVKK-IGERTGGQPRLEAFFFHETIGDF 907 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR--LFLRKDGEWRF 1008 +++G L + + + +R + L ++ W+EHL+ A G R L + KDG F Sbjct: 908 KLSGSLDGIWKERKISYRCAKLKAKDEIRGWIEHLLLNAFAPEGYPRESLVIMKDGSTGF 967 Query: 1009 PPLAAEQALHYLSQLIEGYREGMSAPLLVLPES 1041 P+ E L L++ Y +G+ PL P S Sbjct: 968 GPV--EHPTEQLGALLDCYWQGLHLPLRFFPAS 998 >UniRef50_C1DMH2 Exodeoxyribonuclease V, gamma subunit n=18 Tax=Gammaproteobacteria RepID=C1DMH2_AZOVD Length = 1168 Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust. Identities = 458/1152 (39%), Positives = 611/1152 (53%), Gaps = 111/1152 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVE--RERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIA 57 L V H NRL EAL E VE R P E E++LVQS G+ QWL++ L+ + GIA Sbjct: 11 LMVVHGNRL---EALRELAVEWMRRHPLAPLEDEVVLVQSNGIVQWLKLALAGRDGCGIA 67 Query: 58 ANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL 115 A I LPA F+W + VL IP+ES +K ++W+LM LLP LLE E F LR +L Sbjct: 68 AAIRVELPARFLWQSYRAVLGSAGIPRESPLDKAPLTWRLMRLLPNLLEGEAFAPLRRFL 127 Query: 116 TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--------LVEGLGEAQAWQAP 167 DDSD RK QL+ + ADLFDQY VYR DWLA W GH L EA WQ Sbjct: 128 EDDSDLRKRHQLAERLADLFDQYQVYRADWLADWAEGHDRLRTSRDGARPLDEAARWQPA 187 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW+AL+ + RA ++ RF+E L PPGLP RV + GIS+LP L+AL Sbjct: 188 LWRALLADVGR-DTVATSRAGVHLRFVERLRGLDAPPPGLPRRVMVFGISSLPAQALEAL 246 Query: 228 QALGKHIEIHLLFTNPCRYYWGDI-KDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 AL + ++ L NPCRY+WGDI D L RQRR +D G Sbjct: 247 AALARFSQVLLCVHNPCRYHWGDIVPDQDLLRHQYRRQRR-----------KDGMAPG-- 293 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLS---DLESSQE----LDAFVDV-------TPD 332 +++ +PLLA+WGK GRDYI LL D E +E L +D+ P Sbjct: 294 LSAEDLHQHAHPLLAAWGKQGRDYINLLDRYDDPEHYRERFASLGGRIDLFDEEDGPRPG 353 Query: 333 NLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPL-DP-LDSSITFHVCHSPQREVEVLH 390 +LL +Q DIL L +EE + + PL DP D S+ FH+ HS QREVE+LH Sbjct: 354 HLLGQLQDDILHLRT-------LEE---TRKEWPLVDPKADRSLRFHIAHSAQREVEILH 403 Query: 391 DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG--SAPADRYLPYAISDRRARQSH 448 D+LLA DP L PR++IVMV D+++Y+P IQAVFG + DRY+P++++D+ R Sbjct: 404 DQLLARFAADPGLRPREVIVMVPDVNAYAPHIQAVFGQYARDDDRYIPFSLADQGQRGCD 463 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 P+ A LL LP+ R +VL LLDVP L ARF I E L LR+W+ +GIRWG+D Sbjct: 464 PLPIAVEQLLKLPEGRLTVSEVLDLLDVPALRARFAIEESDLPTLRRWIEGAGIRWGLDA 523 Query: 509 DNVRELELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASL 567 + L LPA Q+TWRFGL RMLLGYA+ S + P+DE GL A L+G L L Sbjct: 524 ERRAGLGLPAGLEQNTWRFGLRRMLLGYAVGSG-APCAGIEPFDEIGGLEAVLIGPLVRL 582 Query: 568 LMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ------QWQAIIA 621 L L+ R LA+ EW + + ML FFL A +E TL+ Q +W + A Sbjct: 583 LEALDDLHRRLARPVAPAEWGRILQAMLGDFFL--ARSERDETLLGQLGEALEEWLELCA 640 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMN 681 G + +PL ++R+ LD+ R+SQRFLAG VN CTLMPMR+IPF+VVCLLGMN Sbjct: 641 ---GVDLDEPLPLGVVREAWLGLLDRGRLSQRFLAGAVNFCTLMPMRAIPFRVVCLLGMN 697 Query: 682 DGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSE 741 DG YPR PL FDLM+ + GDRSRR+DDRYL LEAL++A+++LY+S++GRS++DN E Sbjct: 698 DGDYPRSQTPLDFDLMAGDYRPGDRSRREDDRYLLLEALLAAREQLYVSWVGRSVRDNCE 757 Query: 742 RFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDP--QNYQPGER 799 R SVLV +L D++ LP + D + K L L T P P + Y G+ Sbjct: 758 RPASVLVGQLRDHLASGWRLPEEYHEASDSEADKAKRLLAALTTEHPLQPFSRRYFEGDD 817 Query: 800 Q--SYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNF 857 SYAREW + A + P PF + LETLQ F PV+ FF RL+V+ Sbjct: 818 ALFSYAREWAALHRRDAPAGAARALP-PFEPDGALALETLQNFLRDPVKHFFTQRLKVHL 876 Query: 858 RTEDSEIPDTEPFILEGLSRYQINQQLLNA--LVEQDD-------AERLFRRFRAAGDLP 908 D EPF L+GL +Q+ Q LL+A L +DD E R + +G LP Sbjct: 877 DESMQAQLDEEPFGLDGLQLHQLRQSLLDAASLALEDDPARVEAALEAAALRLQRSGRLP 936 Query: 909 YGAFGEIFWETQCQEMQQLADRVIA-CRQPGQSME----IDLACNGVQITGWLPQVQPD- 962 FGE E + + + R + C +E + GV++ GWL ++ + Sbjct: 937 LAGFGERLREQLLKPLPEQMRRYQSLCSLWSTRLESPKPLWFEHEGVELAGWLGGLRENA 996 Query: 963 --GLLRWRPSLLSVAQGMQLWLEHLVY--------CASGGNGESRLFLRKDGEWRFPPLA 1012 L R + +G W H + A+ G + L + +D F P+ Sbjct: 997 GGALARIELQPGELKRGKDDWKWHRLLRPWVAHVAAAACGAPLTSLLVGQDASLEFAPIE 1056 Query: 1013 AEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFL 1072 +A L +E +R G+ APL V + AWL + + + T +KA Sbjct: 1057 QARAQAILRLWLEAWRAGLEAPLPVALNTAIAWLNSGEEGDEEG-----GTAEKAAR--- 1108 Query: 1073 QAYEGNMMVRGE 1084 +AYEG GE Sbjct: 1109 EAYEGGYNRSGE 1120 >UniRef50_C0N788 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N788_9GAMM Length = 1069 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 389/1116 (34%), Positives = 599/1116 (53%), Gaps = 94/1116 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++ +SN L A + + E L P +PE I+VQS +++WL + L++ IAAN+ Sbjct: 1 MLKIVYSNDTGQLAAWLADHLLSEPLP-PLQPETIIVQSNELSRWLSLRLAKTHQIAANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +FP P+++IW +F ++ P++P +S + K+ M+W+L LLPQ + F + YL D D Sbjct: 60 EFPFPSAYIWQLFRQLWPDVPLQSPYAKEPMAWRLFELLPQAASLDGFEAVAAYLGGDDD 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K ++L+ K AD FDQYL+YRPDW+ QWE G +A +WQ LW+ L T Sbjct: 120 DLKRYELAEKIADTFDQYLMYRPDWVQQWEQG-------QATSWQGKLWQML---TADDP 169 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 QP HRA L Q+ + L + PPGLP+R+ I GISALPPVYL+ + L ++++I L + Sbjct: 170 QPM-HRARLLQQLHDLLSHSDVVPPGLPNRISIFGISALPPVYLEIVNLLARYVDITLYY 228 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +P +YWGDI DP +QR+ D FN D E + G+PLL Sbjct: 229 LSPSEHYWGDIIDPK------KQQRQQLLLD---------------FNED-EIEPGHPLL 266 Query: 301 ASWGKLGRDYIYLLSDLESSQELD--AFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 AS GK G+ + L+ +Q LD FV+ + +L ++ DI E+ V +++ Sbjct: 267 ASLGKQGQAF---FRQLQETQHLDDSCFVEPVGETMLSQLKRDIFEMATDQ-PSVAVKD- 321 Query: 359 SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 D+SI+ VCHSP RE+E+LHD+LLAM E++PTLTP DI+VM DID Y Sbjct: 322 ------------DTSISIQVCHSPMREMEILHDQLLAMFEQNPTLTPTDIVVMTPDIDVY 369 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 +P+I+AVF +A R++P++I+D +Q ++ F S L LP SRF E +LA+L+ P Sbjct: 370 APWIEAVFATADKSRFIPFSIADSSGQQESLLITTFYSFLQLPQSRFDVESILAMLECPA 429 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 + RF + + L ++R+W ++ RWG+D ++ L+LP T +TWR GL R+LLGYAM Sbjct: 430 VQRRFGLDDAALNWIREWCQQTRTRWGLDANDKAALDLPDTESNTWRAGLDRLLLGYAMP 489 Query: 539 SAQGE-----WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRD 593 + + + L D SG A +V L + L+ WR+ LA++ + +W Sbjct: 490 LNEPDQPWRLFDGQLAMDGISGERAHIVAALCDFIDALDAWRQRLARQNTIADWQKQLNQ 549 Query: 594 MLNAFF----LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 L+AFF L + + E +T I Q + + + A + + L+ L L Sbjct: 550 CLDAFFNTEGLEETQFETEITAIRTQLERLSSGAKQADFEQTIGADLILSWLQSHLQPVD 609 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR 709 + RFL + C ++PMRSIPF VVCL+GMND V+PR+ + FDL++ + GDRSRR Sbjct: 610 NAHRFLGHGITFCGMVPMRSIPFDVVCLVGMNDEVFPRRQPSVSFDLLAHDHREGDRSRR 669 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 DDDRYLFLEAL+SAQQ Y+SY+G S+ DNSE PSVLV +L D + + Sbjct: 670 DDDRYLFLEALLSAQQTFYMSYVGASVVDNSEIPPSVLVSDLQDLLAERFET-------- 721 Query: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGERQ--SYAREWLPAASQAGKAHSEFVQPLPFT 827 E+ A + + H F + + Q S+ P +A+ F PLP Sbjct: 722 -ETTATILEQIITKHPLQAFSRRYFDGNNDQLFSFNASHCPTQEMLEQANW-FETPLPEA 779 Query: 828 LPE--TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL 885 V + L RF+AHP + + RL + ++ + EPF L+GL +Q+ Q ++ Sbjct: 780 DDSWRQVTRDQLIRFFAHPTKFILRERLGIRLELDEEALESREPFALDGLESWQLRQWIV 839 Query: 886 NALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV--IACRQPGQSMEI 943 + + Q E L +A G LP G G+ ++E + Q + +++ + Q ++ I Sbjct: 840 DESLSQHSDEGLKPVVQATGMLPQGRLGDAWFEKESQTVDDFIEKLRPVLPEQGWITLAI 899 Query: 944 DLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA---SGGNGESRLFL 1000 DL +G QI G LPQ GLLR+R + + W++HL+ G ++ L L Sbjct: 900 DLNIDGFQINGQLPQFSQQGLLRYRLAKKKGKDLIAAWIDHLILNILKPEGVTLQTHLIL 959 Query: 1001 RKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDD 1060 +D E+ F P+ + L+ L++ Y +G PL ++ A+ T + + Sbjct: 960 -QDAEYVFLPVTGPTQI--LANLLKLYWQGCHLPLKFFDQASLAFAATYFGKKP------ 1010 Query: 1061 DSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 + +KA K+ + G+ GEGDD +Y+RL+ Q Sbjct: 1011 EQKFKKAHDKW--SASGDFA--GEGDDNYYRRLYSQ 1042 >UniRef50_Q2LTC9 Exodeoxyribonuclease V gamma chain n=2 Tax=Bacteria RepID=Q2LTC9_SYNAS Length = 1113 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 400/1132 (35%), Positives = 594/1132 (52%), Gaps = 78/1132 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + SNR++VL + ++ L P PE+I+VQS GM +W+ M L+ GI AN+ Sbjct: 4 LNIIASNRMEVLAEKLADVLAGP-LSSPLTPEIIVVQSRGMERWVSMQLAAFHGICANVR 62 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 FP P I D+F VLP E FN + +W++M+LL R F L YL DDS Sbjct: 63 FPFPRRMIQDIFHAVLPGWEAEQDFNPELAAWRIMSLLTVASSRPGFEPLAAYLHDDSQG 122 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 K FQLS + A LFDQYL++RP+ + WE G+ +WQA LW+ VE ++ Sbjct: 123 LKRFQLSRQIARLFDQYLIFRPEMILNWEKRI---SDGDEYSWQADLWRLFVE-EGKIVH 178 Query: 182 PRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 P R +L I + C LP R+ I GIS LPP YL A+ +E++ Sbjct: 179 PAVLRLSLQDVMIRRGNQLSAC---LPERISIFGISYLPPFYLDIFLAVSSFMEVNFFLL 235 Query: 242 NPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG----QLFNSDGEQDVGN 297 NP R +W DI+ ++ RE+ L + S G +L S+ + GN Sbjct: 236 NPSREFWFDIRSSREIS-------------REVKLVKGSVEKGMENEELSRSELYLEEGN 282 Query: 298 PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LLAS G LGR++ L + S +E + +V+ +LLH IQSDIL L R G Sbjct: 283 SLLASLGTLGREFWSFLGEC-SGREEEYYVEPGETSLLHAIQSDILNL--REGGGE---- 335 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 + +D + + + S+ H CHSP REVEVLHD LL +LE DP+L P DI+VM +I++ Sbjct: 336 -ADADGREVMFSEERSLQIHACHSPMREVEVLHDSLLDLLEADPSLQPHDIVVMTPEIET 394 Query: 418 YSPFIQAVFGSAPADR-------YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 Y+PFI AVF + D +PY I DR PVL + +L LP RF + +V Sbjct: 395 YAPFITAVFETVDEDAPGLVDQPKIPYHIVDRATISGRPVLGGLLKILDLPLGRFAAGEV 454 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 L+LL+V + RF +TE + + +WV +SGIRWGID+ + LP ++W++GL R Sbjct: 455 LSLLEVAAIRNRFGLTEADIDQVSRWVADSGIRWGIDERSRLREGLPEIATNSWQWGLKR 514 Query: 531 MLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 MLLGYA+ + E + ++P + + G A L+G LA +L + L+Q+R L +W Sbjct: 515 MLLGYALPARNNELFSGIMPCETAEGSEARLLGILAEFTERLFLTAESLSQDRTLSDWGS 574 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 + D+ + FFL D ++E + + Q + + + + L+++R L R Sbjct: 575 LLDDISDRFFLGDEDSEPDIRNLRQLASDLKNLQEKTGFPEKISLAIVRSFLQDRFQATG 634 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR 709 FL+ V C+L+PMRSIPF+V+CL+GMN+G YPR+ FDLM++ P+RGDRSRR Sbjct: 635 ADGGFLSRGVTFCSLLPMRSIPFRVICLMGMNNGDYPRRPQTPSFDLMARHPRRGDRSRR 694 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 +DDRYLFLEAL+SA+ LYISY+G+S++DNS PSV+V EL+DY+ + L + N Sbjct: 695 NDDRYLFLEALLSARDTLYISYVGQSMEDNSRIPPSVVVSELLDYVRRGFVL---KDCNI 751 Query: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGERQ--SYAREWLPAASQAGKAHSEFVQPLPFT 827 DE L H F P + + SY+ E AA+ K S + +P Sbjct: 752 DEL-------LITYHPLQAFSPVCFTEESCRLFSYSEENRKAANTLLKRSS--LTSIPGA 802 Query: 828 LPETVP----------LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSR 877 E +P + L F+ HP R F Q RL V D + + E F +EGL R Sbjct: 803 EAERLPEDPAMATQATIRDLIAFFRHPARFFLQRRLAVFLGEADIVLEENEHFDVEGLDR 862 Query: 878 YQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD--RVIACR 935 Y I Q L+ +E E ++ A G LP+GA G+ ++ +++ + I Sbjct: 863 YGIEQLLMEKEIETGHMEEVYPVLAAQGLLPHGAVGQSRFDALKRDICHFVRSYKHILHS 922 Query: 936 QPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS----G 991 + +IDL G +++G L + GLL +R + L ++LW+ HL+ A+ G Sbjct: 923 ENIPPRDIDLEVAGFRLSGRLEGLGSRGLLHYRYATLKGKDHLKLWIMHLLLHATDGPDG 982 Query: 992 GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYD 1051 G+ ES L L K+G WR+ A ++A +L +LI YREG+ PL PE+ A+ Sbjct: 983 GDRES-LLLGKNGLWRYS--AIDEARCHLEKLISLYREGLCRPLHFFPETSWAYAVKILR 1039 Query: 1052 AQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME 1103 + ++S AR +A+EG+ RGEG D + + + +P+ +E Sbjct: 1040 NGELSEEAEESAWDAAR----KAWEGDDFQRGEGVDHYNRLCFGDFSPQDVE 1087 >UniRef50_Q3B473 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B473_PELLD Length = 1075 Score = 591 bits (1524), Expect = e-167, Method: Compositional matrix adjust. Identities = 385/1112 (34%), Positives = 578/1112 (51%), Gaps = 96/1112 (8%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFP 63 ++ SNR +VL A + PF E+++VQS GM +WL M L+++ G+ A +P Sbjct: 5 IHTSNRTEVLAADLASYFAASPPASPFSREVVVVQSRGMQRWLSMELARRLGVWAGARYP 64 Query: 64 LPASFIWDMFVRVLPEIPKESA-FNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKR 122 P + + ++F V P E+ ++ + +W +M LLP +L E F +L YL+ S Sbjct: 65 FPNAVVSELFRHVFPSKEDEAGRYDPECTTWSIMRLLPSMLRDEPFAILSRYLSGSSAPL 124 Query: 123 KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQP 182 +L+QL++K AD FDQY ++RP+ LA WE G EG WQ+ LW+ L +LG Sbjct: 125 RLYQLATKIADSFDQYTLFRPEMLALWEAG---EGTAGPDGWQSILWRRL---NAELGG- 177 Query: 183 RWHRANLYQRFIE--TLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HR L + F TL A P R+ + GIS LP +L L A+ +H E++L Sbjct: 178 -RHRGILKEAFCRNGTLPDAV-----FPRRIALFGISYLPQFHLDILSAIARHREVNLFV 231 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +P YWGDI L+ + +R E GNPLL Sbjct: 232 LSPTEEYWGDIVSRRTLSGMTHAERELHAE-------------------------GNPLL 266 Query: 301 ASWGKLGRDYIYLLSDL--ESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 AS G++GRD+ ++ ++ E ++ ++ ++D D LLH IQSDIL L Sbjct: 267 ASLGRIGRDFSDMVLEIPDEQNRTVERYIDPRRDTLLHAIQSDILTLSGTG--------- 317 Query: 359 SRSDNKRPL-DPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 + +RP+ D S+ H CHSPQREVEVLHDR+L MLE P L PRDI+VM DI++ Sbjct: 318 ---EGERPVCSATDRSVQVHACHSPQREVEVLHDRMLDMLESIPGLAPRDIVVMAPDIET 374 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 YSPFI AVFGSA A+ +P++++DRR V A + LL L SR + ++ LL P Sbjct: 375 YSPFITAVFGSA-AEGRIPFSVADRRLMNEGEVSSAVLRLLELHRSRASAPELFDLLSSP 433 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 +A RF + L+ +R W+ ++ IRWGID++ +LPA Q+TWR G+ R+LLGYAM Sbjct: 434 PVARRFGLDVSALQSIRGWIVDTRIRWGIDEEERSMNQLPAFRQNTWRAGIDRLLLGYAM 493 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 +S + + +LP++ G AE +G A + ++ +R GL++ R LEEW ML Sbjct: 494 DSRESCCEGILPFEGVDGGAAETIGLFADFIDAVDRFRHGLSKTRTLEEWRVFFISMLEH 553 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F L + ++ ++ + + + Y D VP ++ L RL Q+ F+ G Sbjct: 554 FMLTEEDSTREFLAVQDLMERMGEISRLSAYHDEVPPEVVIAWLQGRLQQKEQGLGFMTG 613 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 V C+++PMRS+PF+VV +LGM+DG +PRQ P GFDL+S+ PKR DRS R +DRYLFL Sbjct: 614 GVTFCSMLPMRSVPFRVVVMLGMDDGAFPRQQHPPGFDLISRHPKRADRSVRAEDRYLFL 673 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 E ++SA+ LYIS++GRS +D+S PSVLV EL D I + LP R + Sbjct: 674 ETILSARDVLYISFVGRSRKDSSPIPPSVLVSELFDAIDRGFLLP---------EGVRAE 724 Query: 778 AHLTCLHTRMPFDPQNYQPGERQ-SYARE-WLPAASQAGKAHSEFVQPLPFTLPETVPLE 835 L H PF P + G SY+ E +LP A +G +PL P P E Sbjct: 725 EMLLFSHPLQPFSPACFSAGGPLFSYSEENFLPHAEHSGAGP----EPLFMDSPLPEPGE 780 Query: 836 TLQR--------FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 LQR F+ +P F + RL + + + + EPF L+GL Y+I +L A Sbjct: 781 PLQRVELMDLIGFYDNPSAFFLRYRLGLQPAGQVLPLDEREPFGLDGLDAYRIRAELAEA 840 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL---ADRVIACRQPGQSMEID 944 ++ + D R+ RFRA G LP G+ +++ ++ + R+ P +++ + Sbjct: 841 MLLEGDIGRVQDRFRAEGVLPPALSGDRLYQSLLEDAARFVRSVQRLAPISLPLPALDFE 900 Query: 945 LACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA--SGGNGESRLFLRK 1002 L + ++G L ++ G L RP+ + + M+ W+ HLV C+ G L + Sbjct: 901 LPLGPMILSGRLEGLRSSGQLFARPASMKARERMRSWIFHLVLCSLRPEGVDPETLLIMN 960 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 +G +R A L L +L+E YR G PL PE+ +W + DA Sbjct: 961 NGAYRLRQPEAPGLL--LQELLERYRSGQRMPLAYFPETSFSWEGKLEKGEGDA------ 1012 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 L+ AR + + G RGEGDD ++R + Sbjct: 1013 -LKAARGAWRTSGFGG--ARGEGDDPAFRRCF 1041 >UniRef50_A1TWK1 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Marinobacter RepID=A1TWK1_MARAV Length = 1197 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 420/1185 (35%), Positives = 609/1185 (51%), Gaps = 166/1185 (14%) Query: 6 HSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK---------FGI 56 H+N L+ L + +I R+ P + E LVQS G+AQWL++ L++K GI Sbjct: 15 HANHLEDLRRAVVYIC-RQNPMPPLQSETFLVQSNGIAQWLKLALAEKRTEDGVEGGLGI 73 Query: 57 AANIDFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLL-EREDFTLLRH 113 AA +DF PA FIW + VLP E+P++S F+K+ + W+L LLP+L+ + E FT L Sbjct: 74 AAGMDFLFPARFIWQAYRAVLPDGEVPEQSPFDKRRLVWRLYRLLPELVGQDEAFTPLAR 133 Query: 114 YLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--LVEGLGEAQA------WQ 165 +L + FQL+ K ADLFDQY V+R DWLA WE G ++ GE +A WQ Sbjct: 134 FLDGRDTDLRNFQLAEKVADLFDQYQVFRADWLAAWEQGKDVVITARGEEKALDTEACWQ 193 Query: 166 APLWKALVEYTHQLGQPRWHRANLYQRFIETLE--SATTCPPGLPSRVFICGISALPPVY 223 LW+ LVE + R+ ++ RF+ + S LP R+ + G+S+LP Sbjct: 194 PLLWRKLVEDVG--SEAHTSRSQIHTRFMAQGQHISEPANASRLPKRIVVFGVSSLPRQA 251 Query: 224 LQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENA 283 L+AL L + ++ L NPC++YW DI L K R+R + P+ ++ Sbjct: 252 LEALYVLSRFSQVVLCVHNPCQFYWADIISDRELLKA-ERKRGAAH-----PVLSQIDDP 305 Query: 284 GQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLES-----------SQELDAFVD---V 329 QL NPLLA+WGK GRDYI LL + ++ Q++D F D V Sbjct: 306 DQLHQH------ANPLLAAWGKQGRDYIRLLDEFDNPDDYRASFQTPGQKIDIFTDHGDV 359 Query: 330 TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD-PLDSSITFHVCHSPQREVEV 388 LLH +Q+DI L ++E + +R +D D S+ FH H PQREVE+ Sbjct: 360 DNPCLLHQLQNDIHNL-------TPLQEIRQ--QQRTVDLTRDHSVVFHDAHGPQREVEI 410 Query: 389 LHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG--SAPADRYLPYAISDRRARQ 446 LHD+LLA DPTL PRD+IVMV DI+ Y+P IQAVFG S R++P+ ISD+ R Sbjct: 411 LHDQLLAAFNADPTLRPRDVIVMVPDINVYAPHIQAVFGRYSPGRKRHIPFTISDQGQRH 470 Query: 447 SHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGI 506 PVL A +L+SLP SRF ++++LL+V + RFDI+E+ + R+WV + IRWG+ Sbjct: 471 HEPVLIALETLMSLPRSRFGVSEIISLLEVAGIRDRFDISEDDIPLARRWVEGANIRWGL 530 Query: 507 DDDNVRELELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA 565 + L+LPA ++TW+ GL MLLGY M Q W V PY E GL A L G L Sbjct: 531 HGKHRESLDLPAELERNTWQAGLRAMLLGYGMGDDQ-PWGGVEPYGEIGGLQASLAGRLG 589 Query: 566 SLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL------IEQQWQAI 619 + QL + L R EW + ML FF E + + L +EQ Sbjct: 590 EFVHQLEALWQALQATRTPGEWEALFSAMLEQFF-HKVEGQDLLLLNRFRRQLEQWLDDA 648 Query: 620 IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLG 679 +A GL Q +PL++++D L Q LD+ ++QRFLAG VN TLMPMR+IPF+ VCLLG Sbjct: 649 LAAGLEQQ---PLPLNIVKDVLLQGLDEGGLNQRFLAGKVNFATLMPMRAIPFRKVCLLG 705 Query: 680 MNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDN 739 MNDG YPR P+ FDLM+Q + GDRSRR+DDRYLFLEAL+SA+++LYIS++GRSI+D+ Sbjct: 706 MNDGDYPRSRPPVDFDLMAQDYRPGDRSRREDDRYLFLEALLSAREQLYISWVGRSIRDD 765 Query: 740 SERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD----PQNYQ 795 SER PSVL+ +L D++ + G + + V LT H PF P+ Sbjct: 766 SERPPSVLISQLQDHLNSLWKVAG-------QPDGSVTKALTTQHPLQPFSRDYFPRTNG 818 Query: 796 PGERQ-----------------SYAREWLPAASQAGKAHSEFVQPLPFTLPET-VPLETL 837 G+ + +Y REW A + S + LP+ PE + L L Sbjct: 819 VGDGEETQPKPLADVLQARGLFTYEREWRSAHAVDNPEQSR--EALPYQTPEEPISLTEL 876 Query: 838 QRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN-ALVEQDDAER 896 F P+ F+Q RLQV F + + D E F L GL R++++ +L++ +V+ E Sbjct: 877 ANFLKKPIDTFYQRRLQVRFEAVEEDDTDNENFDLNGLDRWRLDNELIHEGVVKAASEEE 936 Query: 897 LFRRFRA------------------------AGDLP------YGAFGEI----------- 915 L R A AG LP GA E Sbjct: 937 LHERLEATLDRMARRGDLGMGVTEHRLRTELAGRLPDLFQRYRGALAEWPEAVAEPLPFE 996 Query: 916 FWETQCQEMQQLADRV--IACRQPGQSMEIDLACNGVQI-TGWLPQVQPDGLLRWRPSLL 972 F + ++AD + + C GQ + +A +G+ +G+ +V+ LLR Sbjct: 997 FRYSDSTGAVEVADLIDNLRCNPAGQLCRLVIASSGLLTGSGYSKKVRYANLLR------ 1050 Query: 973 SVAQGMQLWLEHLVYCASGGNGESRLFLRKDG-EWRFPPLAAEQALHYLSQLIEGYREGM 1031 WL HL SG E+ + +++G ++RFP +A EQA + ++ + E Sbjct: 1051 -------DWLVHLAGQLSGQPFETVILGKEEGRKFRFPVMAPEQAQKHFEAILGRWMEAT 1103 Query: 1032 SAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYE 1076 + L + E+G AW+ + Y + ++ D + + +A + A + Sbjct: 1104 TRTLPIHCEAGFAWITSFYGGKK-SVGDHERAISEAEQAYSTALD 1147 >UniRef50_D2BZV3 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Gammaproteobacteria RepID=D2BZV3_DICD5 Length = 1169 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 421/1113 (37%), Positives = 582/1113 (52%), Gaps = 103/1113 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-----FGI 56 L HSN + L ++ + L E E+ILVQS G+ QWL++ L++ G+ Sbjct: 10 LMAIHSNHPEALRDVLVSWMAAHPLSG-LENELILVQSNGIGQWLKLALARDTHDGGCGV 68 Query: 57 AANIDFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHY 114 AA +D LP+ F W + VL ++P+ S F+K + W+L+ LLP LL + +F L + Sbjct: 69 AAALDIQLPSRFFWQAYRAVLGREQVPETSPFDKPLLVWRLLRLLPDLLTQPEFAALARF 128 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--------LVEGLGEAQAWQA 166 L D+D RK +QL+ + ADLFDQY VYR DWLA W G VE L E Q WQ Sbjct: 129 LRQDTDLRKHYQLAERLADLFDQYQVYRADWLADWSEGRDVLTSHRRGVEPLPEEQRWQP 188 Query: 167 PLWKALVEYTHQLGQPRWHRANLYQRFIETLE--SATTCPPGLPSRVFICGISALPPVYL 224 LW+AL+ T + RA L++RF++ ++ + P GLPSRV + GIS+L L Sbjct: 189 LLWRALLADTGE-ALSGTSRAALHRRFLDEVDRRGDSERPAGLPSRVVVFGISSLSQQAL 247 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDI-KDPAYLAKLLTRQRRHSFEDRELPLFRDSENA 283 + L A+G+ ++ + NPC +YWG+I D L RQ+R + L ++A Sbjct: 248 ELLAAIGRWTQVFMCVHNPCEHYWGNIIADKDLLRAERARQQRKPGMPEVIALEELHQHA 307 Query: 284 GQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVDVTPD 332 +PLLA+WGK GRDYI LL + + ++ +D F D Sbjct: 308 -------------HPLLAAWGKQGRDYIGLLDEYDQREQYESLLQPVISRIDLFNSNGED 354 Query: 333 NLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR 392 LLH +Q DI +L A SRS DSS+ FH+ HSPQREVEVLHD+ Sbjct: 355 CLLHQLQDDIRDLRPLAE--------SRSRWPAIDSDQDSSVRFHLAHSPQREVEVLHDQ 406 Query: 393 LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG---SAPADRYLPYAISDRRARQSHP 449 LLA DPTL P D+IVMV DI+SY+P IQAVFG RY+P++++DR ARQ++ Sbjct: 407 LLAAFAADPTLRPSDVIVMVPDINSYAPHIQAVFGLIDRQKDPRYIPFSVADRGARQNNL 466 Query: 450 VLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDD 509 VL A LL LP SR DVL LLDVP + RF I EE L L++W+ + +RWG+ Sbjct: 467 VLAALEKLLHLPQSRVAVSDVLDLLDVPAVRQRFAIEEEQLPLLQRWIRAANVRWGLHAR 526 Query: 510 NVRELELP-ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLL 568 + L LP A Q++W FGL RMLLGYA+ A G W+ + P DE GL A L G LA LL Sbjct: 527 QRQSLNLPDAPEQNSWFFGLRRMLLGYAV-GAGGAWRDIEPLDEIGGLDAALAGQLAWLL 585 Query: 569 MQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL-IEQQWQAIIAEGLGAQ 627 +L+ + L Q +W R +L+ FF D + M L +++ Q + Sbjct: 586 DRLDYSWQQLCQPATPVQWCERLRVLLSTFFAADDGEDGFMLLQLDEGLQNWLEACESVA 645 Query: 628 YGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPR 687 +PLS++R+ +Q ++Q F AG V TLMPMR+IPF+ VCLLGMNDG YPR Sbjct: 646 LTQELPLSVVREHWLGLFEQTSLTQPFFAGAVTFATLMPMRAIPFRHVCLLGMNDGDYPR 705 Query: 688 QLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 PL FDLM Q + GDRSRR+DDRYLFLEAL+SA+++LYIS++GRSI DNSER PSVL Sbjct: 706 NRVPLDFDLMGQDYRPGDRSRREDDRYLFLEALLSARERLYISWVGRSIHDNSERPPSVL 765 Query: 748 VQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ-SYAREW 806 V +L D++ G +N + V LT H PF P+ + G SYAREW Sbjct: 766 VAQLRDHLSN-----GWRIVNGQD----VLPALTVEHRLQPFSPEYFTAGSSLFSYAREW 816 Query: 807 ---LP----AASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 LP A+SQ A + + + L L F PVR+FF++RL V F Sbjct: 817 RAGLPSYDGASSQTAAASDAVLD--DYVQDGVLTLRQLADFVRDPVRSFFRLRLNVWFEQ 874 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALV---------EQDDAERLFRRFRAAGDLPYG 910 ED D EPF ++ L +++ +L+ EQ AE L +R G+L G Sbjct: 875 EDPTSQDQEPFAIDALENWRLQHELIQVQKAALQRQIPREQALAEHL-QRITRRGELAPG 933 Query: 911 AFGEIFWETQCQEMQQLADRVIACRQ--PGQSMEIDLACNGVQITGWLPQVQPD------ 962 F + + + M L R R P + L+ + + WL +++ D Sbjct: 934 GFATVLEQDLAEPMADLFTRYEQERDKWPTPIPDEPLSLPELPLEDWLNELRLDEQGNRC 993 Query: 963 -------GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQ 1015 GLL + + + W+ HL GG+ + K+G P L Q Sbjct: 994 RLVLESGGLLHPTRRSYRLDKLLPFWVAHLA-GHLGGHALHSTLVSKNGTVHLPALEPAQ 1052 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKT 1048 A Y L++ +REGM PL V ++G WL+ Sbjct: 1053 AAAYWQSLMDAWREGMRCPLPVAVKTGFRWLEV 1085 >UniRef50_Q0VNI2 Exodeoxyribonuclease V gamma chain n=3 Tax=Gammaproteobacteria RepID=Q0VNI2_ALCBS Length = 1138 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 422/1116 (37%), Positives = 576/1116 (51%), Gaps = 128/1116 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L V H NRL+ L L+ ++RE L P E E LVQS GMAQWL++ L+ GI+A Sbjct: 5 LMVLHGNRLETLTELVADWLQREPLS-PLETETFLVQSNGMAQWLKLQLADALGISAGFQ 63 Query: 62 FPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 F +PA F+W + VL E +P+ S F+K + W+L LLP LL E F LRH+L DD Sbjct: 64 FQMPARFLWGAYRTVLGEDQVPRTSPFDKSRLLWRLYRLLPTLLNSEHFGPLRHFLADDV 123 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH----------LVEGLGEAQAWQAPLW 169 D RK QL+ + ADLFD Y +YR DWL WE G+ + +Q WQA LW Sbjct: 124 DGRKRHQLAERLADLFDAYQMYRADWLDDWENGNDRLRKTQDRDTFDDFPASQLWQAHLW 183 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETL---ESATTCPPGLPSRVFICGISALPPVYLQA 226 +AL+ Q R+ +++ F+ L + T PP LP R+ I GISALP L+A Sbjct: 184 RALLADMDDSKQG-LSRSAIHRDFMAALTQQQEQGTPPPRLPRRLIIFGISALPQQALEA 242 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L AL +H +I +L NPC++YW DI ED++L L R +N + Sbjct: 243 LAALSQHCQILMLVQNPCQHYWADI-----------------VEDKQL-LRRQLDNRKRH 284 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELE 346 + E V NPLLA+WGK GRD+I LL D + PD+ Q+ I E Sbjct: 285 LTALPENRV-NPLLAAWGKQGRDFIGLLYDHDD-----------PDSYRSAFQNQIDLFE 332 Query: 347 NR---------AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 NR +++E + + PL+ +DSS+ F + HS QREVE+L D LL Sbjct: 333 NREPHTLLQQLQQDILDLEPLPEPNRRLPLE-MDSSLQFRIGHSAQREVEILQDELLDRF 391 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFI 455 DPTL PRD+IVMV DI++Y+P I AVFG D RYLPY +SDR A + P+ +A Sbjct: 392 SNDPTLQPRDVIVMVPDIEAYAPHIDAVFGRLERDDPRYLPYTLSDRSAGAASPLAQAVE 451 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE 515 SLL LP RF + D+L LLDVP + RF I E L L +W++++ IRWG++ + L+ Sbjct: 452 SLLHLPQWRFTATDILDLLDVPAVRERFGIDEGDLPQLARWIDQARIRWGLNSPQRKTLD 511 Query: 516 LPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 +P Q++W FGL RML GY + W + P DE +GL AEL G L+ LL L Sbjct: 512 VPGFEQNSWAFGLKRMLAGYLLGDGPA-WMGIEPLDEVAGLGAELAGRLSRLLDTLEQHW 570 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLP----DAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 + + +W +L+ F P D +A + W A AE A + Sbjct: 571 QQSRTDASARQWQQRFTQLLDDLFAPVDEADQTLDAGLRDALNDWLAACAE---ADFDSL 627 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 +PL++ R L L+ E +SQRF+AG +NICTLMPMR+IPF+ VCLLGM DG YPRQ P Sbjct: 628 LPLTVARRPLLDALNAESMSQRFMAGRINICTLMPMRAIPFRHVCLLGMKDGDYPRQQQP 687 Query: 692 LGFDLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 + FDLM Q + GDRSRRDDDRYLFLEAL+SA+ LYIS+ GR+++DNSER PSVLV Sbjct: 688 MDFDLMRQWGNYRPGDRSRRDDDRYLFLEALLSARDSLYISWTGRNVRDNSERPPSVLVA 747 Query: 750 ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER---------- 799 +L D+I Q + E ++ LT H PF + + Sbjct: 748 QLRDHINQRWHTDQGEPVDA----------LTVSHPLQPFSARYFYSANDASAANNADAH 797 Query: 800 --QSYAREWLPAASQAGKAHSEFVQPL-PFTLPETVPLETLQRFWAHPVRAFFQMRLQVN 856 +YA EW A + + QPL P E + L RF PV FF+ RL+ Sbjct: 798 ILHTYANEWR-ALHEEQTHRVDNDQPLPPLENNEPISCAALGRFLKQPVAHFFEQRLKAR 856 Query: 857 FRTEDSEIPDTEPFILEGLSRYQINQQLLNALV-----EQDDAERL-FRRFRAAGDLPYG 910 + + + D+EPF +GL R+Q+ QLLN + +DA R+ R +GDLP Sbjct: 857 LKQQRQVLDDSEPFSFDGLQRFQLQDQLLNEALRAGPEHANDAMRVAMDRLAGSGDLPLA 916 Query: 911 AFGEIFWETQCQEMQQ--------LADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPD 962 F E ++ + Q LAD QP Q EI L +QI WL ++ Sbjct: 917 PFDEGNRDSLLLPLAQPLEHYFTLLADS--GTLQPQQ--EIRLTAGPLQIEDWLTDLRGS 972 Query: 963 -----------GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPL 1011 G L+ R L+ + W HL CA+G + + +DG + P + Sbjct: 973 SANAQRLVLHTGKLKERFDKLT-----RDWTLHLAACAAGLPLTTHI-QGQDGRFSLPHI 1026 Query: 1012 AAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLK 1047 A L QL +++ + PL V + AWLK Sbjct: 1027 HRSDAQQCLDQLGYAWQKALCEPLPVACATAFAWLK 1062 >UniRef50_A4VRQ6 Exodeoxyribonuclease V gamma chain n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VRQ6_PSEU5 Length = 1092 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 392/1133 (34%), Positives = 579/1133 (51%), Gaps = 85/1133 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +YH+ L+ L L ++ + L DPF P ++V S GM +WL + L+++ GIA + Sbjct: 1 MLSLYHAPDLETLGELATTLLAQP-LADPFAPARVVVPSQGMGRWLTLELARRQGIAMQL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 + LPA+F+WD+ VL +P++SAF+ +++W+L L + E L YL D D Sbjct: 60 ELQLPAAFVWDLSRTVLGSLPEQSAFSPTTLTWRLYGWLCEPANLELAPRLAQYL-DGGD 118 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 +R+ L++K AD+FDQYL+YR DWLA WE G ++ LG +AWQA LW+ L + H Sbjct: 119 ERRRLSLAAKIADVFDQYLLYRDDWLAAWERGETLD-LGPDEAWQALLWRELTKDGHP-- 175 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HRA L ++ L P LP R+ + GIS+LPP +L+ L L +HI++ + Sbjct: 176 ----HRARLLGDLLQRLYRDEPLP-DLPERLLVFGISSLPPHHLRVLDGLARHIDVVVCA 230 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NP R WG+I+D + L RQ +D L DVG+PLL Sbjct: 231 LNPSREAWGEIRD----IRELARQPESGVDDWYL-------------------DVGHPLL 267 Query: 301 ASWGKLGRDY---IYLLSDLESSQELDAFV---DVTPDNLLHNIQSDILELENRAVAGVN 354 AS GK GRD+ ++ L+ E SQE + D+ D+LLH +Q+DIL L R + Sbjct: 268 ASLGKQGRDFFDSLFSLTASEGSQEFGLYSEDEDLHDDSLLHALQNDILRLRTR----LP 323 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 E S ++N D S+ H+ HSP REVE+LHD+LLA DP LTP ++V+ D Sbjct: 324 DERISLAEN-------DRSLEVHIAHSPLREVEILHDQLLARFAADPALTPDQVVVLTPD 376 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 I+ Y+PFI+AVF +PY+++DR R P++EAF+ LL L SRF +E++LA L Sbjct: 377 IERYAPFIEAVFAPREGSPRIPYSLADRSLRAEVPLIEAFLELLLLAQSRFAAEEILAWL 436 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 + P +A R I E L LR W+ E+G+RWG D + L LPA TWR GL R+LLG Sbjct: 437 EQPAIARRAGIESEDLPLLRDWLREAGVRWGRDGEQRARLGLPAEPAFTWRQGLDRLLLG 496 Query: 535 YAMESA-QGEWQSVL----PYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 +A G+ +L P D G +L+G L + +L LA+ RPL EW Sbjct: 497 FAAPPQLAGDRAPLLGEHWPLDALEGARGQLLGRLVGFVERLGSLADQLARPRPLAEWAD 556 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 + +++ F + E + L+ Q A+ + A + L L+ +L+ L Q Sbjct: 557 DLQVLIDTLF-DEREAGETLLLLSQACAALRDQAQAADLTRPIELELVHQQLSAALQQGG 615 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR 709 + FL G V CT++PMRS+PF+VVCLLG++DG +PR+ P GFDL+ + P+RGDR+RR Sbjct: 616 GASGFLTGAVTFCTMVPMRSLPFRVVCLLGLDDGAFPRRTPPSGFDLIGRHPRRGDRARR 675 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 DDRYL LE L+SA+Q LY+SY+GR +DN+ PSVL+ E+++ + + L Sbjct: 676 LDDRYLLLETLLSARQALYLSYVGRDPRDNAVLPPSVLLSEVLEAVDMTAVLA------- 728 Query: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 + V + H PF P+N+ Y+ W AA + + QP L Sbjct: 729 -DGARPVSQKILIAHPLQPFSPRNFGEAPCAGYSLPWFRAAQRLAEPPQAQAQPFASLLA 787 Query: 830 E------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQ 883 E T+ L + + HP R + RL + + + EPF LE + + + Sbjct: 788 EPDEAWLTIEPSQLLQCFRHPARFLLEQRLGLRLADDQESLASDEPFDLEMPAWNGLRRL 847 Query: 884 LLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSM 941 L A+ ++ E R AAG LP G G+ W ++ A R+ R + + Sbjct: 848 SLQAMEQRWSDEEERRMACAAGWLPTGELGQALWGKLRGPVRAFAPRLFELRPDAVPEPL 907 Query: 942 EIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV--YCASGGNGESRLF 999 +D+ GV++ GWL V P GL W+ L WL HL+ CA+ G L Sbjct: 908 PVDINLAGVRVHGWLDGVTPGGLFGWKLGRLGEWDLPPFWLRHLLLNLCATPGIERHSLM 967 Query: 1000 LRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLD 1059 L G+W+ PLA A L + YR + PL +LP S A+ + + Sbjct: 968 LSPAGDWQLGPLA--NAAELLEPWLVAYRSAIREPLPLLPRSSQAFARGYRKPSRGS--- 1022 Query: 1060 DDSTLQKARTKFLQAYEGNMM--VRGEGDDIWYQRLWRQLTP--ETMEAIVEQ 1108 L AR + +A+ G + E +D W +R P E E + EQ Sbjct: 1023 --EPLDCARKRAREAWFGAEFSPIAAEAEDPWNALAFRDSDPLDERFETLAEQ 1073 >UniRef50_C5S7Q0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7Q0_CHRVI Length = 1200 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 424/1188 (35%), Positives = 601/1188 (50%), Gaps = 162/1188 (13%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK---------- 53 + NRL+ L L+ + R L P E E ILVQS G+AQWL++ L+ Sbjct: 18 LIQGNRLEELRGLLVAWMHRHPLA-PLENETILVQSNGIAQWLKLALAATPTSDDRDAIT 76 Query: 54 --FGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL-----LERE 106 GIAA +D LPA FIW ++ VL ++P+ S F+K ++W+L LL +L L+ Sbjct: 77 GGQGIAAALDVMLPARFIWRVYRAVLGDLPETSPFDKAPLTWRLYRLLERLTGVAPLQSS 136 Query: 107 DFTL-----LRHYLTDDSDK---RKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--LVE 156 D LR +L D + R+ +QL+ + ADLFDQY VYR DWL W G L+ Sbjct: 137 DTRFDALDPLRGFLAVDGQEAAPRRRYQLAERLADLFDQYQVYRADWLEAWSQGRDVLIR 196 Query: 157 GLGE------AQAWQAPLWKAL---VEYTHQLGQP---RWHRANLYQRFIETLESATTCP 204 GE Q WQ LW+AL V+ H P RA +++ F+E + Sbjct: 197 PNGERRSIPVGQDWQPVLWRALQADVDAEHGPDDPPLRHASRAEVHRVFLERTRAGQDAD 256 Query: 205 PG---------LPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPA 255 P LP RV + G+S+LP L+AL+A+ ++ L NPCR+YWGDI + Sbjct: 257 PTRIAALRSVELPRRVIVFGLSSLPRQMLEALEAIAPVCQVMLFVLNPCRHYWGDIIEGR 316 Query: 256 YLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLS 315 L RH + + ++ + +L + G+PLLA+WGK GRDYI LL Sbjct: 317 DLF-------RHPYRRQTARKVPENLDESRLHLN------GHPLLAAWGKQGRDYIRLLD 363 Query: 316 DLES--------------SQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRS 361 + + Q +D F +LLH +Q DILEL R Sbjct: 364 EQDERRRYEAYFQGLTARDQGIDLFASPGTGSLLHQLQDDILELR---------PLHERQ 414 Query: 362 DNKRPLDP-LDSSITFHVCHSPQREVEVLHDRLLAMLEE----DPTLTPRDIIVMVADID 416 D + +DP D S+ F V HSPQRE+E+LHDRLL E D L PR+++VMV DI Sbjct: 415 DQRTVIDPEHDRSLEFIVAHSPQREIEILHDRLLDAFERSARTDRPLQPREVLVMVPDIA 474 Query: 417 SYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 ++P IQAVFG D R +P+ I+D+ R +P++ LL+LP +RF ++L LL Sbjct: 475 VHAPHIQAVFGRFDPDDRRAIPFQITDQGQRHRNPLVIGLEHLLNLPRARFAVSELLDLL 534 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP-ATGQHTWRFGLTRMLL 533 D+P L RF + E L LR W+ + +RWG+D L LP Q+TWRFGL R+LL Sbjct: 535 DIPALRTRFSLDEPDLPRLRLWIAGANVRWGLDAAQRASLGLPEGLEQNTWRFGLRRLLL 594 Query: 534 GYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRD 593 G+A A G W+ + P+DE GL A L+G LA LL +L + + L + R W + Sbjct: 595 GFASGDA-GPWRDIEPHDEVGGLEAALLGPLAQLLERLEAYWQCLTEPRTPAGWSALISA 653 Query: 594 MLNAFFLPDAETEA---AMTLIE-QQWQA-IIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 +L+ FF+ +E++ A L+E W+A + GLGA+ + L ++RD L RLD+ Sbjct: 654 LLDDFFMETSESDGVTLARILLELDAWEADCVQGGLGAE---PIALEIVRDSLLARLDRP 710 Query: 649 RISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSR 708 ++QRFL G VN TLMPMR+IPF+ + LLGMNDG YPR+ P FDLM+ + GDRSR Sbjct: 711 SLTQRFLGGAVNFATLMPMRAIPFRQIWLLGMNDGDYPRRRVPADFDLMAGDYRPGDRSR 770 Query: 709 RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN 768 R+DDRYLFLEAL+SA++KL I ++GR I+DNSER PSVLV +L D++ P Sbjct: 771 REDDRYLFLEALLSAREKLVIGWVGRGIRDNSERPPSVLVGQLRDHLAAGWRRP------ 824 Query: 769 CDESEARVKAHLTCLHTRMPFDPQNYQPGERQ---SYAREWLPAASQAGKAHSEFVQPLP 825 D AR+ A LT +H PF ++PG + +YAREW AG + P Sbjct: 825 -DGDGARLLAALTSVHPLQPFGRGYFEPGRAKTLFTYAREWRAVHDGAGTTEVSAERLAP 883 Query: 826 FTLPET-VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL 884 + LPET V L+ LQ F P+ A F RL++ E PD E F L+GL +QI +L Sbjct: 884 W-LPETPVDLDQLQGFLRDPIMALFDQRLRIKAPGEVVAPPDVETFALDGLGDWQIKDEL 942 Query: 885 LNALVE--------QDDAERLFRRFRAAGDLPYGAFGEIF--------------WETQCQ 922 ++ E + + RF+A G LP G+ GE W+ Sbjct: 943 ISRTFEPGLDRPALEQRLQAGIARFQAQGRLPDGSLGERLGRTVIAYLPVLHAAWDAALS 1002 Query: 923 EMQQLADR----VIACRQPGQSMEIDLACNGV--------QITGWLPQVQPDGLLRWRPS 970 E + DR ++ P + ++ + + QI + D +WR + Sbjct: 1003 EWPRRLDRPIPVMVEVNVPAGRLVLEDVLSDLREGDDGRGQIILQTSGLTKDKHYQWRNT 1062 Query: 971 LLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG 1030 L + W+ HL G +RL L G+ R P+ ++A L L+ + EG Sbjct: 1063 L-------RAWVRHLAAQLDGEPVTTRL-LTPSGDARLEPVPVDEARERLEALLVVWWEG 1114 Query: 1031 MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ--KARTKFLQAYE 1076 M PL V +G AWL D L+D + + KA LQA++ Sbjct: 1115 MQRPLPVALNAGMAWL----DKDGPETLEDGTAPEELKAWNAALQAFD 1158 >UniRef50_A8ZX08 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX08_DESOH Length = 1085 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 381/1109 (34%), Positives = 565/1109 (50%), Gaps = 81/1109 (7%) Query: 5 YHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPL 64 + SNR+++L + LD+PF E I+VQS GM +WL M +++ GI A+ F Sbjct: 4 FTSNRMEMLSRAFCEALTAYPLDNPFARETIVVQSMGMKRWLSMEMARHTGICAHNRFLF 63 Query: 65 PASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRK 123 P +F+ M + +P ++M+W + +L + + L+ YL D D K Sbjct: 64 PNAFLNQMLQTAFADAVPVSPDVGVEAMTWAVFPVLADVFAHPALSPLQAYL-QDGDVIK 122 Query: 124 LFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPR 183 +QL+++ AD FDQYLV+RPD L QWE G L E WQA LW+ L+ Sbjct: 123 RYQLAARIADTFDQYLVFRPDMLLQWEAGALPADPHEK--WQAHLWRLLISQG------- 173 Query: 184 W--HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 W RA +++F+ +S LPSRV + GIS LP ++Q AL +E+ Sbjct: 174 WAEQRAERWKQFLSLAQSGALAGSTLPSRVSVFGISTLPRFHVQVFAALSAFLEVRFFVL 233 Query: 242 NPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLA 301 NPCR+YWGDI L+ +Q + R++P E A L + GN LLA Sbjct: 234 NPCRHYWGDI-----LSTYEKKQVETGADARDIP-----EAARHL-------ETGNSLLA 276 Query: 302 SWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRS 361 S G + RD+ ++ D QE F +L +Q+DIL+L++ A +E R Sbjct: 277 SMGMVARDFFAMVED-HPHQETSLFAPAGETTMLACLQNDILDLKDAA-----DQERVRV 330 Query: 362 DNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPF 421 D D+S+ VCHSP REVE LHD LLAM E D L+P D++VM +++ Y+P+ Sbjct: 331 DGN------DASMQISVCHSPMREVEALHDNLLAMFEADAGLSPEDVLVMAPNMEVYAPY 384 Query: 422 IQAVF--GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 ++AVF G+ + +PY ++DRR++ PV+ F+ L+ L +SRF VL +L+ + Sbjct: 385 VEAVFDAGADDGGQRVPYTVTDRRSKSGSPVVRTFLGLMDLWESRFGISAVLEILESAFV 444 Query: 480 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 539 RFDI E + QW+ ++G+RWG+D + +LP ++TW+ G+ ++LG AM + Sbjct: 445 RERFDIGEAEFFRISQWLVDAGVRWGLDGAFKTDRDLPEFSENTWKQGIDSLVLGCAM-A 503 Query: 540 AQGE--WQSVLPYDESSGL-IAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 +GE + +LPYD G + L LA + L +R+ P W + ++ Sbjct: 504 GKGEILFDGLLPYDHMEGSDVDSLEKFLAFWHVLLRFYRQCGGAHAP-GRWRQILTALVE 562 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 + F D EA + +I A+ A + V L ++R+ L +R + + F++ Sbjct: 563 SMFAADPAVEADLQVITDALNALGESAAHAGFDGPVDLPVIREFLNRRFEGQAYGAPFIS 622 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLF 716 G V C+++PMRSIPF V+CLLGMN YPRQ GFD++ + P+ GDRS+R+DDRYLF Sbjct: 623 GGVTFCSMLPMRSIPFAVICLLGMNVDDYPRQTFSPGFDMIRKHPRPGDRSKRNDDRYLF 682 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 LE L+SA+++LYISY+G ++DNS+R PSVLV EL DY+ + D D V Sbjct: 683 LETLLSARRRLYISYVGHDMRDNSDRPPSVLVGELCDYLRERF----DAGPLTD-----V 733 Query: 777 KAHLTCLHTRMPFDPQNYQPGE--RQSYAREWLPAASQ-AGK-----AHSEFVQPLPFTL 828 +T H PF P + R SYA ++L AA Q AG A E P+P Sbjct: 734 VEKITTHHRLQPFHPDYFSSDTQARFSYAADYLAAARQLAGGRPGRPAALEPAVPVPDNA 793 Query: 829 -PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 P+T+ +E L RF+AHP R F RL + D + EPF + GL RY + ++L+ Sbjct: 794 DPQTIEVEDLCRFFAHPARYFLTQRLGLRVAETDRIPEEAEPFEVAGLERYDMARRLVER 853 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSMEIDL 945 L+ +D A L RA+G LP+G G+ +E V A G EI L Sbjct: 854 LLAEDPAAPLENALRASGILPHGEPGKRLFERLKTGAAGFVAGVRAVTANGGLDRREIRL 913 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGE 1005 NG + G L + R+R + + W+ HL + G S F +DG Sbjct: 914 DINGTTLCGTLDGIGEQEWFRFRYATARPGDFITNWIAHLAWSVDQGRAGSGRFAARDGW 973 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 W F P+ + L L+ LIE YR+G PL P S + +T N +M D Sbjct: 974 WAFDPV--DNGLSILAALIEIYRQGRLRPLHFFPRSAFVYAETLQKKGNASMALD----- 1026 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 + LQA+ GN V GE +D +Y LW Sbjct: 1027 ----RALQAWRGNERVAGEKEDPFYA-LW 1050 >UniRef50_P57528 Exodeoxyribonuclease V gamma chain n=4 Tax=Buchnera aphidicola RepID=EX5C_BUCAI Length = 1070 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 310/1131 (27%), Positives = 577/1131 (51%), Gaps = 77/1131 (6%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SN L+ L I+E + + FE E+ + + + Q+L + +++K GI+AN Sbjct: 1 MFTIYKSNSLNTLLLKAYHIIEEKPFSNIFEKEIFIYDNKVLFQYLNIFIAEKKGISANF 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F P FIW +F +L + ++ F + W+++ +L D Sbjct: 61 KFYHPNDFIWKLFKIILSKKELKNIFTHSMIIWEIIKIL--------------------D 100 Query: 121 KRKLFQ-------------LSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAP 167 +K F+ S A +F +Y++YRP+W+ QWE + + + WQ Sbjct: 101 NKKFFENCSKKKDMIKKFKFSFLMASIFKKYILYRPEWINQWEIEKNISIFDKNEQWQIK 160 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW ++ T ++ Q H ANL+ + ++ LP R FI ++ P Y++ Sbjct: 161 LWMEIIHNTKKINQSSDHFANLFYNIQKIIKEKKIKKKYLPKRFFIISSFSMNPSYIKIF 220 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 Q + + +I+ L+ P + + + +D ++ F D + Sbjct: 221 QNISIYTDIYFLYITPFK-----------------KNIFNFIQDNKI--FTDIK------ 255 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELEN 347 + + + + L+ WG+ Y + + + ++ ++ F +LL I+++ Sbjct: 256 -IEKKNILNDSLITLWGQYEEIYYFYILKSKKNKVINCFKKNKNKSLLSQIKNNFF---- 310 Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 N EF+R KR L+ D SI+ ++C + + E+EVL+++LL L E+ ++ P D Sbjct: 311 ------NDSEFTRK--KRFLEISDHSISINICFNKKNEIEVLYEKLLIFLNENSSIKPGD 362 Query: 408 IIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 I+V +D+Y I +F S + +P+ I+ + ++ + +L +F +L+L +SRF + Sbjct: 363 IVVTSFSLDTYISSINLIFQSIDNKKTIPFFIAKKSSKTTEIMLWSFKKILNLSNSRFEN 422 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 E++L LLDVP +A +F+ +EE ++ L W+ E+ IRWGI++ + L P Q+TW +G Sbjct: 423 EEILELLDVPEIAEKFNFSEEEIKILYHWIEETNIRWGINEKHKNYLLFPKNKQNTWFYG 482 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 + ++LL YAM + W VL +G +EL+G L S + L W++ L++ + L W Sbjct: 483 IEKLLLSYAMNDTEKIWNGVLSCSFINGSRSELIGKLISFIKILEKWQKKLSKLQYLTYW 542 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 + D+++ FF + + E ++ +I+++W II + L + Y + +++L+ + Sbjct: 543 RSLYSDLVSDFFQNNTKIEKSIQIIQKKWIEIIDDSLSSNYLKKISINILKKIFFYKYYD 602 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + FL G VN C + IPFKV+C++G + P+ F+L+ + P GD + Sbjct: 603 NN-HEIFLPGVVNFCYPDSVCYIPFKVICMIGTDHTSIPKTNYLDNFNLLKKYPLIGDIN 661 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 YLF+++L A++ YISYIG S++D S+ PS+LV +L++YI + GD+ L Sbjct: 662 LYQKYSYLFVQSLSCAEKYFYISYIGYSVKDESKVHPSILVDQLLNYITLNFCFIGDQNL 721 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFT 827 + E+ ++ +L H + F Y+ +S+ ++ + + + + L Sbjct: 722 SYKENSKKITKYLCKKHKKQFF----YETKNIESFIQDDIKNDFKHTEKNISHKNLLKKN 777 Query: 828 LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 + L+ L FW HP+R F+ L++ R + +I TE F++ L+ ++I +LL+ Sbjct: 778 TDNEINLKDLINFWKHPIRYFYNSHLKIKIRQKKQKINTTETFLVNPLNSFKIKNKLLDY 837 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLAC 947 ++ + +L++ + +G LPY FGEIFW +EM+ +A++V+ R + +I+L Sbjct: 838 IIHNKNITKLYQHYLLSGKLPYHFFGEIFWIKNIKEMKLIANKVMQYRIEKEEKKINLNI 897 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWR 1007 QI G L ++Q GLLRW+ S + + + LWLEHL+Y GG G+S++ K W Sbjct: 898 EKYQIYGVLSEIQSTGLLRWKTSSIRYSDRIALWLEHLIYSILGGCGKSKIIGYKSQIWS 957 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 F L + +A YL + I+GY +GM PL L +SG +WL YD +N+ + +D T KA Sbjct: 958 FSSLNSHRAHSYLLEYIKGYIKGMKEPLF-LTKSGASWLDQVYDERNNCIKNDYYTKIKA 1016 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 K L ++G+ GE +D + ++ + ++ I E ++++L+P+ + Sbjct: 1017 YKKLLYTWKGDNYTEGEQEDYYLKKTITISNKKNIKKICESAEKWLIPILK 1067 >UniRef50_A4JS85 DNA helicase/exodeoxyribonuclease V, gamma subunit n=11 Tax=Proteobacteria RepID=A4JS85_BURVG Length = 1209 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 421/1177 (35%), Positives = 590/1177 (50%), Gaps = 134/1177 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------- 53 L + H NR + L L+ ++ L P E E ILVQS G+AQWL++ L+ Sbjct: 9 LMLIHGNRSEQLRDLLVEWIKHYPLA-PLESETILVQSNGIAQWLKLALAADRDPATGEG 67 Query: 54 -FGIAANIDFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL 110 GIAA +D LP+ F+W + VL + + S F+K + W+LM +LP L R F Sbjct: 68 GCGIAAALDVSLPSRFVWQAYRAVLGAESVAEVSPFDKSRLVWRLMRMLPALAARPAFEP 127 Query: 111 LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQ 162 LR +++DD D+RK FQL+ + ADLFDQY +YR DWLA+W G V + L + Q Sbjct: 128 LRRFISDDDDRRKRFQLAERLADLFDQYQMYRADWLARWADGDAVVLDARGGEQPLPDEQ 187 Query: 163 AWQAPLWKALV------EYTHQLGQPRWHRANLYQRFIETLES--ATTCPPGLPSRVFIC 214 WQA LW LV + + ++ R RA +++ F+ + + P G+P R+ I Sbjct: 188 RWQAALWHELVADVAGSDASREISS-RGGRAAVHEAFMRRIAAWDDDRGPVGIPRRIVIF 246 Query: 215 GISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDI-KDPAYLAKLLTRQRRHSFEDRE 273 GIS+LP L+AL AL + ++ + NPC +YW DI D L + RQ+R + E Sbjct: 247 GISSLPHQLLEALAALARWSQVMMCVANPCAHYWADIVPDRDLLGRRQPRQQRRTGMPAE 306 Query: 274 LPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS------------- 320 L L D +PLLASWGK GRD+I LL +++ Sbjct: 307 LDL-------------DTLHLHAHPLLASWGKQGRDFIGLLDAFDNADAREHYGPKFARI 353 Query: 321 -QELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRP-LDP-LDSSITFH 377 Q +D F LL +Q DI +L + P +DP D SI FH Sbjct: 354 GQRIDLFESRGASTLLQQLQDDIRDLR----------PLRETQETWPDVDPATDGSIRFH 403 Query: 378 VCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG----SAPADR 433 V HS QREVE+LHD+LLA DP+L P+D++V+V DI++Y+P +QAVFG S P R Sbjct: 404 VAHSAQREVEILHDQLLAAFNADPSLRPQDVVVVVPDIEAYAPHVQAVFGLVDRSDP--R 461 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYL 493 Y+P++++DR R++ P++ A LL LP++R D+L LLDVP L RF I E L L Sbjct: 462 YIPFSVADREQRKADPLIGALEMLLGLPNARLAVSDLLDLLDVPALRKRFGIDETDLPKL 521 Query: 494 RQWVNESGIRWGIDDDNVRELELP----ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP 549 R W+ + IRWG+ L LP A HTW FGL RMLLGYA+ S G W + P Sbjct: 522 RAWIRGANIRWGLHAQQRASLGLPLDEHAAAPHTWAFGLRRMLLGYAVGSEAGAWHDIEP 581 Query: 550 YDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP-DAETEAA 608 +DE GL A L+G L L+ L+ R LA+ +W R++ FF D+E Sbjct: 582 FDEVGGLDAALLGPLVRLIDALDHAWRSLAEPATAPDWCERLRNLKQTFFSAHDSEDAYT 641 Query: 609 MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMR 668 + ++ QA + A+ D +PLS++ D +LD+ +SQRF AG V TLMPMR Sbjct: 642 LARLDNVLQAWLDACTEARLTDVLPLSVVSDHWLSQLDEGGLSQRFFAGAVTFATLMPMR 701 Query: 669 SIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLY 728 +IPF+ VCLLGMNDG YPR P+ FDLM + GDRSRR+DDRYL LEAL+SA+ L+ Sbjct: 702 AIPFRRVCLLGMNDGDYPRARVPMDFDLMRLHYRPGDRSRREDDRYLLLEALLSARDHLH 761 Query: 729 ISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMP 788 +S++GRSI DN R PSVL+ +L D++ L G D A VKA LT H P Sbjct: 762 VSWVGRSITDNGVRPPSVLIGQLRDHLAAGWRLAGASGAGPD---ALVKA-LTVEHPLQP 817 Query: 789 FDPQNYQPGERQ-----SYAREWLPAASQAGKAHSEFVQPLPFTLPETV-----PLETLQ 838 F + P +YA EW +A + P +P V L L Sbjct: 818 FSVAYFPPDTNDAAAVFTYAAEW----RDEPRACRDPAPPAATHVPAIVRDDPLSLRELA 873 Query: 839 RFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN---ALVEQDDAE 895 F A PV+ FF RL+V +++ + D EPF L+ L +++ +L+ A + DDA Sbjct: 874 EFLAKPVKTFFSQRLRVALDVDETAVDDEEPFELDSLDAWKLQDELIGVQAAHMHDDDAL 933 Query: 896 RLFRRFRAA-----GDLPYGAFGEIFWETQCQEMQQL--ADRVIACRQPGQSMEIDLACN 948 R R A GD+ G FG++ + M +L A R R P + ID C Sbjct: 934 VAARDARMAAIRRRGDVVPGGFGDLASAALLEPMDELFAAYRKQLARWP---VAIDGECE 990 Query: 949 -GVQITG---------WLPQVQPDGLLRWRPSLLSVAQGMQL-----------WLEHLVY 987 QI G WL Q + D R +L + ++ W+ HL Sbjct: 991 VAFQIAGESRVPGLSDWLGQWREDSEGRRARLVLETSALVEKGAYRYHKLVGHWVRHLAA 1050 Query: 988 CASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLK 1047 +G + + + + K G PLA +L+ L++ + GM PL V ES AWL Sbjct: 1051 NLAGRH-VTTVIVSKKGIVELRPLAGGDTEAHLTALLQVWDAGMREPLPVAVESAFAWLV 1109 Query: 1048 TCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGE 1084 + + +D T A Y G+ +GE Sbjct: 1110 RRFGKDGNGAAPED-TRAAAEKAARSKYAGDAYNKGE 1145 >UniRef50_Q2SQD5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD5_HAHCH Length = 1073 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 358/1066 (33%), Positives = 569/1066 (53%), Gaps = 78/1066 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y+SNR + L AL+ + R + + P + ++++VQS GM++WL L++ G+AAN+ Sbjct: 1 MLKIYYSNRQEQLLALLADALARPKAN-PLQSDILIVQSQGMSRWLSQQLAEINGVAANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +F LPA IW + ++P+ F+K ++W+LM L P L + +F L YL D Sbjct: 60 EFQLPAQLIWRLARLCRDDLPELHPFDKSILTWRLMQLAPGLPDSGEFDALHRYLHTGPD 119 Query: 121 KR-----KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEY 175 ++ + +QLS + AD+FD YL+YRPDWL++WE G E AWQ LW+ L Sbjct: 120 RKSPDLLRNYQLSQRIADVFDHYLMYRPDWLSEWEQGLPTEAGASEHAWQIELWRGL--- 176 Query: 176 THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 TH P HRA + Q L LP R+F+ G+ + P YL LQ +HIE Sbjct: 177 THDSDAP--HRARVLQELAAQLPQHVD---KLPPRLFVFGVPYMAPAYLDVLQNAARHIE 231 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 +H+ NP +YWGDI ++++ TR D L+ D Sbjct: 232 VHMYQWNPTEHYWGDIASRKDISRIRTR---------------DGAEVSGLY------DE 270 Query: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVD-VTPDNLLHNIQSDILELENRAVAGVN 354 G+ LLASWGK RDY+ +L D+ S E D +V P LL +Q+D+ L Sbjct: 271 GHRLLASWGKPLRDYLDVLQDV-SVTEADCYVPPAPPQTLLQRLQADVFNLRQ------- 322 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 E + S P D D S+ H+CHS REVE L+D+L+ +L+ D +L+PRDI+VM D Sbjct: 323 -EPWPES----PAD--DRSLQVHLCHSALREVEALYDQLMDLLQTDHSLSPRDIVVMTPD 375 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 I+ Y+P ++AVFG+ R +P++++D ++++ + L L RF + +VL LL Sbjct: 376 IEQYAPLVEAVFGAQQGARRIPWSLADLSRYSDFNLVQSVLQLFDLLPGRFTASEVLGLL 435 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 ++P + RF + EE L LRQW++E+ IRWG+D ++ + + Q +W+ G+ R+LLG Sbjct: 436 EIPAVGRRFGLDEELLSRLRQWLHEASIRWGLDAESQQAYGVDCADQFSWKAGIKRLLLG 495 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 +A+ A +Q V PY G A+ +G L+ L+ L WR +++ + ++W + Sbjct: 496 FALPDAMQMYQDVAPYPHIQGGDADSLGALSQLIDTLARWRAQISRGQTPQQWADLLHSW 555 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 +N F PD + E A+ + + Q + E A + +PL++++ +L +RLD Q F Sbjct: 556 MNDLFDPDRDEEQALQVAREAVQEWLQETQTAGFDQPLPLAVVKQDLRRRLDSPLRRQSF 615 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L G V C ++PMRSIPF+VV +LG+N +PR GFDL+++ P++GDR+RR++DR+ Sbjct: 616 LTGAVTFCAMVPMRSIPFRVVAVLGLNHDQFPRHQTQPGFDLIAEYPRKGDRARREEDRF 675 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEAL++A+ Y+SY+GRSI+DNSE PSV++ EL+D I + EA Sbjct: 676 LFLEALLAARDVFYLSYVGRSIRDNSECAPSVILSELLDTIQEQG------------GEA 723 Query: 775 RVKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPA--ASQAGKAHSEFV-------QPL 824 ++ L H PF P + G SY EWLPA + + + F + Sbjct: 724 AIRRILRE-HPLQPFSPHYFTADGGHFSYQSEWLPALHGRHSKQEYQAFCPESLPPRERE 782 Query: 825 PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL 884 PF+ V L++L+RF +P R F Q RL + D D EPF L GL +Q+ + Sbjct: 783 PFSTDHPVELDSLRRFLRNPTRYFVQQRLNILLDASDL-AQDREPFDLAGLHGFQVKELW 841 Query: 885 LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEID 944 L L+ E A G LP GA G I + Q+++ L ++ + +EI Sbjct: 842 LQELMNAATDEEAESYLEAKGLLPGGAVGAISRKQTRQQLEALREQARELYGKDR-IEIT 900 Query: 945 LACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR--LFLRK 1002 +G+ + G + + P GLL + S ++ + LWLEHL C + +R + + Sbjct: 901 PEKSGLPLRGAVAGIGPRGLLHLTTAGCSASRMLLLWLEHLALCGVTADALARPSFLVCR 960 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKT 1048 G + P+A QA L++L++ + + P+ P++ +++T Sbjct: 961 QGVGHYRPVAQNQARQLLAELMDLLTQSENEPVRFFPKTSLKYVET 1006 >UniRef50_A3JIN1 Exodeoxyribonuclease V gamma chain n=2 Tax=cellular organisms RepID=A3JIN1_9ALTE Length = 1224 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 411/1161 (35%), Positives = 590/1161 (50%), Gaps = 142/1161 (12%) Query: 6 HSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK---------FGI 56 H+N L+ L + FI ++ L P + E LVQS G+AQWL++ L++K GI Sbjct: 23 HANHLEDLRRAVVFICQQNPLP-PLQSETFLVQSNGIAQWLKLALAEKRSENGSEGGLGI 81 Query: 57 AANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQL-LEREDFTLLRH 113 AA +DF PA FIW + VLP+ +P++S F+K+ + W+L LLP+L L E F L Sbjct: 82 AAGMDFLFPARFIWQAYRAVLPDGDVPEQSPFDKRRLVWRLYRLLPELVLTDEAFNPLAR 141 Query: 114 YLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQAWQ 165 +L + FQL+ K ADLFDQY V+R DWLA WE G V + + + WQ Sbjct: 142 FLDGSDTDLRAFQLAEKVADLFDQYQVFRADWLAAWEQGRDVVISTRNGEKPIEQDTRWQ 201 Query: 166 APLWKALVEYTHQLGQPRWHRANLYQRFIETLE--SATTCPPGLPSRVFICGISALPPVY 223 LW+ LVE T + R+ ++ RF++ + +A + P LP R+ + G+S+LP Sbjct: 202 PMLWRKLVEDTG--AEAHTSRSQIHTRFMKQGQQVAAPSHPSRLPKRIVVFGVSSLPRQA 259 Query: 224 LQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENA 283 L+AL L + ++ L NP ++YW DI L K R+R S P ++A Sbjct: 260 LEALYVLSRFSQVVLCVHNPSQFYWADIVSDRELLKA-ERKRGASH-----PTLSQIDDA 313 Query: 284 GQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQEL-------DAFVDVTPDN--- 333 QL NPLLA+WGK GRDYI LL + ++ E D +D+ ++ Sbjct: 314 DQLHQH------ANPLLAAWGKQGRDYIRLLDEFDNPDEYRNSFQTPDQKIDIFSEHGAG 367 Query: 334 ----LLHNIQSDILEL--------ENR-----------AVAGVNIEEFSRSDNKRPLD-- 368 LLH +Q+DI L E R A ++ E ++ P + Sbjct: 368 QTTCLLHQLQNDIYNLTPLQEIRDEQRKLDLSQGHPLTAEGSLSAEGSLSAEGSLPAEGS 427 Query: 369 -------PLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPF 421 D S+ FH HSPQREVE+LHD+LLA D TL PRDI+VMV DI+ Y+P Sbjct: 428 LSSEGFPKADGSVAFHNAHSPQREVEILHDQLLAAFNADDTLRPRDIMVMVPDINVYAPH 487 Query: 422 IQAVFG--SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 IQAVFG +A R++P+ ISD+ R PVL A +L+SLP RF ++++LL+VP + Sbjct: 488 IQAVFGRYTAGRKRHIPFTISDQGQRNHEPVLIALETLMSLPRHRFGVSEIISLLEVPGI 547 Query: 480 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT-GQHTWRFGLTRMLLGYAME 538 RF+I EE + R+WV + IRWG+ + LELPA ++TW+ GL MLLGY M Sbjct: 548 RDRFEIAEEEIPLARRWVEGANIRWGLHGAHRESLELPADLDRNTWQSGLRSMLLGYGMG 607 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 + W V PY E GL A L G L + +L + L R +EW + ML F Sbjct: 608 DDE-PWAGVQPYGEIGGLQASLAGRLGDFVYRLEKVWQDLQASRTPQEWEALFAAMLEQF 666 Query: 599 FLPDAETEAAMTL------IEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 F E + L +EQ +A GL Q +PL++++D L LD+ ++Q Sbjct: 667 F-HKVEGHDLLLLNRFRRQLEQWLDDTLAAGLEHQL---LPLNIVKDVLLDGLDEGGLNQ 722 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 RFLAG VN TLMPMR+IPF+ VCLLGMNDG YPR P+ FDLM+Q + GDRSRR+DD Sbjct: 723 RFLAGKVNFATLMPMRAIPFRTVCLLGMNDGDYPRSRPPVDFDLMAQDYRPGDRSRREDD 782 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEA++SA+++LYIS++GRSI+D+S R PSVLV +L D++ LPG + Sbjct: 783 RYLFLEAMLSAREQLYISWVGRSIRDDSPRPPSVLVGQLQDHLNGLWQLPG-------QP 835 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQ-----SYAREWLPAASQAGKAHSEFVQPLPFT 827 + V LT H PF ++Y P R +Y EW A + L + Sbjct: 836 DVAVTDALTTCHPLQPFS-RDYFPQSRHARSLFTYEHEWRRAHGTVSTDAQH--KALAYQ 892 Query: 828 LPET-VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQ-----IN 881 PE V L L F P+ F+Q RLQV F + + DTE F L GL R++ I Sbjct: 893 QPEEPVTLNDLSGFLKKPIDTFYQRRLQVRFEDVEDDDTDTENFDLNGLDRWRLDTELIE 952 Query: 882 QQLLNALVEQDDAERLFRRFRAA---GDLPYGAFGEIFWETQCQEMQQLADRVIAC---- 934 Q LL A E+D RL GDL G + L +R + Sbjct: 953 QGLLKASSEEDLEHRLETTLDCMARRGDLGMGTTEHRLRNELSGRLPNLFERYQSALAEW 1012 Query: 935 -RQPGQSMEIDL----ACNGVQITGWLPQVQPDG------LLRWRPSLLS---------V 974 + G+ + + + V++ + ++ + L+ SLL+ Sbjct: 1013 PEEVGEPLAFEYRLANSTGSVEVLDLIDHLRRNHEGNICRLVIAGSSLLTGSGNTKKIRY 1072 Query: 975 AQGMQLWLEHLVYCASGGNGESRLFLRKDG-EWRFPPLAAEQALHYLSQLIEGYREGMSA 1033 A M+ W+ HL + E+ + +++ RF PLA E A +L ++ + + + Sbjct: 1073 ANLMRDWVIHLAGQIAAQPFETLILGKEEKRNVRFAPLAKETASKHLDAILARWMDANTR 1132 Query: 1034 PLLVLPESGGAWLKTCYDAQN 1054 L V E+G AW+ + Y ++ Sbjct: 1133 ALPVHCEAGFAWIYSFYQSKK 1153 >UniRef50_C1D6T7 RecC n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T7_LARHH Length = 1159 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 425/1170 (36%), Positives = 581/1170 (49%), Gaps = 152/1170 (12%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-FGIAANIDF 62 + H+NR ++L ++ + R+ L P + E+ LVQS GMAQWL+ L++ GIAA +DF Sbjct: 9 ILHANRAEMLRDVILAWLARDPLSSPLDDEVFLVQSQGMAQWLKHALAESPAGIAAALDF 68 Query: 63 PLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 LP F+W + VL E +P +S F+K +SW+L LP L F L ++ D+D Sbjct: 69 QLPQGFLWRCYRAVLGEDSVPAQSPFDKAPLSWRLYRELPAWLHEPVFAPLARFVEADAD 128 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-------LVEGLGEAQAWQAPLWKALV 173 R+L+QL+ + ADL+DQY YR DWL WE GH L E + WQA LW+ L Sbjct: 129 PRRLYQLAHQLADLYDQYQSYRADWLTGWENGHDDITRHGRPAPLPEGERWQAELWRRLA 188 Query: 174 EYTHQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 QL R HRA ++QRF+ L T P LP RV + G+SALP L+AL A+ + Sbjct: 189 G---QLASARHTHRAAVHQRFVAALREGTPPPGSLPERVVVFGLSALPQQTLEALDAISR 245 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE 292 H + + NPCRYYWGDI + + QR R S L +S Sbjct: 246 HSHVLMAVNNPCRYYWGDIVEGREWLRRQAEQRHR----------RRSGMPAALDDSTLH 295 Query: 293 QDVGNPLLASWGKLGRDYIYLLSDLE--------SSQELDAFVDVTPDN---LLHNIQSD 341 +PLLASWG+ GRD+I LL+D + +Q++D F + P LL +Q Sbjct: 296 LHA-HPLLASWGRQGRDFIALLADYDRWQSAAATHAQDIDLFDEAVPAGTLPLLQQVQQA 354 Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 +LELE ++ PL D SI FHV HSP REVE+LHD+LLAM + DP Sbjct: 355 VLELE----------PLPAEPHRLPLP--DHSIAFHVAHSPLREVEILHDQLLAMFD-DP 401 Query: 402 --TLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISL 457 L PRD++VMV DI SY+PFI+AVFG P D R++P+A+SD+ A + P+L A L Sbjct: 402 ELALKPRDVMVMVPDISSYAPFIRAVFGKLPPDHPRFIPFALSDQSAVSTEPLLRALQQL 461 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L LP R +VL LLDV + RF + E L L +W+ SGIRWG+ EL +P Sbjct: 462 LDLPALRLTVSEVLELLDVAAMRRRFRLRETDLPLLTRWIEGSGIRWGLSAAQRAELGMP 521 Query: 518 AT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 Q++W FGL RMLLGYA A WQ + PYDE G+ A L G LA LL L WR+ Sbjct: 522 DDFDQNSWHFGLDRMLLGYAC-GAGASWQGMAPYDEVGGMDAALAGQLADLLSTLAHWRQ 580 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL---IEQQWQAIIAEGLGAQYGDA-V 632 L + W + A D + E + L I +A G D + Sbjct: 581 CLQEPATPAGWQARIAALAEACL--DIKDEHDLLLYAGIADTLDNWVATLDGNGLADTRL 638 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 PL ++RD L +L +S RFL G VN TLMPMR+IPFKV+CLLG+NDG YPR Sbjct: 639 PLEVVRDVLLGQLADTSVSMRFLGGAVNFGTLMPMRAIPFKVICLLGLNDGDYPRSQNRA 698 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FDLM+Q + GDRSRRDDDRYL LEAL+SA+++ Y+S++G+S +DN R PSVLV++L Sbjct: 699 DFDLMAQDYRPGDRSRRDDDRYLLLEALLSARRRFYLSWVGKSPRDNRPRPPSVLVEQLR 758 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ--PGERQ--------SY 802 DY+ L + + + A LT H PF P+ + P R +Y Sbjct: 759 DYLAAGWQA---APLGTEPATTGLLAALTTEHPLQPFSPRYFSRAPDARPQPDQPPLFTY 815 Query: 803 AREW--LPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTE 860 +W + A+ + + TL RF P F RL+V F Sbjct: 816 DSDWRAIHDATDPPAEPAAALPLPLPDWDGRTDAVTLARFLRQPAATFLHGRLKVRFGEL 875 Query: 861 DSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAA-------GDLPYGAFG 913 D E+ + EPF L+ L+ +Q+ +LL A+ + +AE R ++AA G LP+GA G Sbjct: 876 D-ELAEDEPFALDPLATHQLKSRLLEAVRDVPEAE-TGRHWQAAATRLTEEGGLPFGAAG 933 Query: 914 EIFWETQCQEMQQLADRVIACRQ------------------------PGQSMEIDLACNG 949 Q +Q V+A RQ Q+ + C+G Sbjct: 934 -------AQLLQACHAPVMALRQNWHRLDDLTDLPPLTLPPLLLPLAGDQTATLLAHCDG 986 Query: 950 VQI--------------TGWLPQVQPDGL-LRWRPSLLSVAQGMQLWLEHLVYCASGGNG 994 +Q TG L G RW P L ++ + W HL A+ G Sbjct: 987 LQAVAADSPPLRRRVMRTGRLADSAGRGADTRWIPRLHTL---VGFWPAHLALQAA-GLA 1042 Query: 995 ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQN 1054 L + + + PL A++A H L L +R+ PL + ++ G WL+ Q Sbjct: 1043 IPTLIVGETVTLQLAPLPADEARHCLQVLAGYWRQAHGEPLPLPCKTAGVWLQ-----QQ 1097 Query: 1055 DAMLDDDSTLQKARTKFLQAYEGNMMVRGE 1084 DA AR QAYEG GE Sbjct: 1098 DA--------SAAR----QAYEGGYHSTGE 1115 >UniRef50_C5JAU6 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=uncultured bacterium RepID=C5JAU6_9BACT Length = 1183 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 407/1145 (35%), Positives = 584/1145 (51%), Gaps = 130/1145 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLD--DPFEPEMILVQSTGMAQWLQMTLSQKFG---- 55 L + H NR+++L + +V+R R + P E E+ILVQS GMAQWL++ L++ G Sbjct: 10 LTLIHGNRIELLR---DDLVDRFRREPSAPLESEIILVQSNGMAQWLKLGLAETGGRGGG 66 Query: 56 ------IAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLERED 107 IAA ++ LPA F+W ++ VL E +P+E+ F+K + W+LM LLP + E Sbjct: 67 GGSGLGIAAALELLLPARFLWRIYRSVLGEAAVPEETPFDKTRLVWRLMRLLPGIAAEER 126 Query: 108 FTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--LVEGLG------ 159 F LRH+L D+D+RK +QLS + ADLFDQY VYR DWLA W G L++ G Sbjct: 127 FAPLRHFLRQDADQRKCYQLSVRLADLFDQYQVYRADWLACWAKGEDLLIDARGRRSAIP 186 Query: 160 EAQAWQAPLWKALVEYTHQLGQP----RWHRANLYQRFIETLESATTCPPGLPSRVFICG 215 E Q WQA LW+ L+ + G RA ++ F+ + P GLP RV + G Sbjct: 187 EEQRWQAALWRLLIADVARTGAGVDAVSGGRAEVHAAFLRRARTEDLLPAGLPRRVTLFG 246 Query: 216 ISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELP 275 ISALP L+ L AL + ++ + NPC++YW D+ REL Sbjct: 247 ISALPYQSLEVLMALSRWTQVLMYVHNPCQHYWADV-----------------IAGRELF 289 Query: 276 LFRDSENAGQLFNSDGEQDV-----GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVT 330 R + G ++ + PLLA+WG GRD+I LL D L A Sbjct: 290 RARRGQRGGAHGVAEPVPEALLHLHAQPLLAAWGMQGRDFIGLLEDAVGEGALWA----E 345 Query: 331 PDNLLHNIQSDILELENRAVAGVNIEEFSRSDNK-RPLD-------PLDS----SITFHV 378 + L +++ + + AG +++ + RPLD P+D+ S+ FHV Sbjct: 346 GEPLAFDVEREACFVARGGAAGTLLQQLQEDILELRPLDETRALWPPVDAQQDRSLCFHV 405 Query: 379 CHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLP 436 H QREVE+LHD+LL L DP+L+PRDI+VMV DID+Y+ IQAVFG A+ R++P Sbjct: 406 AHGAQREVEILHDQLLDALNADPSLSPRDILVMVPDIDAYAAHIQAVFGLHGANDPRFIP 465 Query: 437 YAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQW 496 + + +R R++ +L LL L +R + D+L L++P L RF I E L LR+W Sbjct: 466 FVVVNRTRRKADLLLMTLERLLGLARARVTANDLLDWLELPALRRRFGIAEADLPLLRRW 525 Query: 497 VNESGIRWGIDDDNVREL------ELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLP 549 + +SGIRWG+D + + E+ T +HTWRFGL RMLLGYA+ W + P Sbjct: 526 IRDSGIRWGLDASHCGAVLGVPGGEIDGTRTRHTWRFGLERMLLGYAVGDRGAPWCGIAP 585 Query: 550 YDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAM 609 +DE EL+G LA L+ + R + + W R +L FF P+ E A Sbjct: 586 FDEIGLGDGELLGRLADLVAAVEATWRQMKSAATVAAWCGRLRGVLARFFAPEEEDADAY 645 Query: 610 TLIE-----QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTL 664 TL+ W+A+ AE AQ D +P++++ + L++ +SQ F AG V TL Sbjct: 646 TLLRLDAHLDAWEALCAE---AQLVDPLPVTVVGEYWLSCLEEGGLSQGFFAGAVTFATL 702 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQ 724 MPMR+IPF+ VCLLG+NDG +PR + FDLM + + GDRSRR+DDRYLFLEAL+SA+ Sbjct: 703 MPMRAIPFRQVCLLGLNDGAFPRPGNRIDFDLMGGRYRPGDRSRREDDRYLFLEALLSAR 762 Query: 725 QKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLH 784 ++L + ++GR I DN+ PSVLV +L D++ L G +A V A LT H Sbjct: 763 ERLALFWVGRGIHDNAVAPPSVLVGQLRDHLAAGWRLAGGADPAGGSGQALVAA-LTVEH 821 Query: 785 TRMPFDPQNYQPGERQ-----SYAREWLPAASQAGKAHSEFVQPLPFTLP----ETVPLE 835 PF + G +YA EW PA +AG + V +P P E + L Sbjct: 822 PLQPFSRDYFCRGAETDARLFTYAHEWRPA-REAGAPAALPVGSVPLLPPVTREEPLRLV 880 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 L R + PVR FFQ RL V F E + D EPF L+ L +Q LL A E D + Sbjct: 881 ELARLFKDPVRGFFQQRLGVRFEREALFLDDHEPFDLDALEHWQSIDALL-ACREPDALD 939 Query: 896 RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL--ADRVIACRQPGQSM---------EID 944 R R R +G LP G GE E + + +L ++ + R G+ + +ID Sbjct: 940 RGLERLRLSGVLPAGGQGEHLAEALRETLTRLNGQEQALLARWSGEEIGERTFRFARQID 999 Query: 945 LAC-------------NGV--QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA 989 NGV +I +V G++R P +L ++ W+EHL + Sbjct: 1000 GRSVAVVDSLRGVRRGNGVLGRIVRTASRVLNAGVIR--PEVL-----IEAWVEHLAWQM 1052 Query: 990 SGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTC 1049 G G + + L +DG PL+ + A L L+ + +GM PL LP G A Sbjct: 1053 RLGAGIT-VVLGRDGGIELAPLSRQAAGMALEALLAAWWQGMRHPLAFLPGVGWAGFDGV 1111 Query: 1050 YDAQN 1054 A+ Sbjct: 1112 EKAEK 1116 >UniRef50_Q5QUQ7 Exonuclease V gamma subunit n=2 Tax=Idiomarina RepID=Q5QUQ7_IDILO Length = 1155 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 358/925 (38%), Positives = 512/925 (55%), Gaps = 82/925 (8%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFP 63 V H +RL+ L + + L P E E +LVQS G+AQWL++ L+Q GIAA ID Sbjct: 10 VAHGHRLEDLTDVAVTFTQNYPLA-PLEQETVLVQSNGIAQWLKINLAQASGIAAMIDVT 68 Query: 64 LPASFIWDMFVRVL-PEIPKESAFNKQSMSWKLMTLLPQLLERE-DFTLLRHYLTDDSDK 121 LPA F W + VL +IPK S F+K ++W+LM LLP+L+E F L+HY +DDSD Sbjct: 69 LPARFQWKAYRAVLGDDIPKTSPFDKDRLTWRLMRLLPELIEHNPHFAPLKHYTSDDSDG 128 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV----EGLGEAQAWQAPLWKALVEYTH 177 RKL+QLS + ADLFDQY VYR DWL W G + + + + Q WQ LW+A+ ++ Sbjct: 129 RKLYQLSGRLADLFDQYAVYRADWLDNWVRGQDMLEQEQPVEDEQLWQPELWRAV---SN 185 Query: 178 QLGQPRW--HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 +G + +RA L+QRFI+T ++ T P GLP RV + GIS+LP LQ L A+ + + Sbjct: 186 DIGIDDYWNNRAELHQRFIDTAQALTERPAGLPPRVVVFGISSLPQQMLQVLDAIKGYTQ 245 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 I L NP +Y+W DI D + + ELP D N +L + Sbjct: 246 ILLCVHNPSQYHWADIVDGKEALRQAVKASSRLKHKPELP---DDPNDDEL------HQL 296 Query: 296 GNPLLASWGKLGRDYIYLLS---------DLESSQELDAFVDVTPDNLLHNIQSDILELE 346 +PLLASWGK GRDYI LL + ++ +L+ F D+LL +Q DIL L Sbjct: 297 AHPLLASWGKQGRDYIRLLDLYDETLAKQEAFNTIKLELFEPHNTDHLLAQLQDDILNL- 355 Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 R V E + N D S+ FHVCHSPQRE+EVLHD+LL +DP L PR Sbjct: 356 -RPVQ--ETRELWPTPNT-----ADKSLQFHVCHSPQRELEVLHDQLLDAFAKDPELKPR 407 Query: 407 DIIVMVADIDSYSPFIQAVFG------SAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 D++VM+ D+++Y+P+I AVFG R +PY I+D+ R P++ A LL + Sbjct: 408 DVMVMLPDVNTYAPYIDAVFGRYHNRFGERDPRAIPYTIADQGERHQRPLMIALELLLQV 467 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 RF D+ LL VP + RFD++++ L L++WV E+G RWG++ + + +PA Sbjct: 468 DQLRFTQTDLFNLLSVPAVQQRFDMSDDDLPQLKRWVKEAGARWGLNAEQRAQFYMPAAE 527 Query: 521 Q-HTWRFGLTRMLLGYAMES-------AQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 + ++W FGL RM+ GYAM W +V PY E +GL A LVG LA ++ L Sbjct: 528 ETNSWWFGLKRMIAGYAMGDLADVNLENDSPWANVEPYTEVAGLSAALVGCLADVVRTLE 587 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ------QWQAIIAEGLGA 626 W + E L EW+ +L FF +AE ++ L+ + Q + I E A Sbjct: 588 QWWQRAQGEHSLPEWVTQGEWLLEQFF--EAEEDSDRLLLAKLSDELYQLRDICVE---A 642 Query: 627 QYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 + L + +D +R+DQ+ ++QRFLAG VN TLMPMR+IPFK VC+LGMN+ YP Sbjct: 643 DNESQLRLPIFKDAWLERVDQQNLNQRFLAGAVNFATLMPMRAIPFKYVCVLGMNESDYP 702 Query: 687 RQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 R + FDLM+ + + GDRSRRDDDRYLFLEA++SA+ Y+S++G S +DNSER PSV Sbjct: 703 RSTPRVDFDLMTDRYRPGDRSRRDDDRYLFLEAMLSARDCFYLSWVGYSAKDNSERTPSV 762 Query: 747 LVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ--NYQPGERQSYAR 804 LV +L D++ Q E + + LT +H PF+P N + + +YA Sbjct: 763 LVAQLRDHLQQGW-------------EVDINS-LTVVHKLQPFNPYYFNQEDSDYFTYAS 808 Query: 805 EWLPAASQAGKAHSEFVQPLPF--TLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 EW A A + S L T+ + ++RF P R +F RL F Sbjct: 809 EWAQAHQGAVASTSRTASETAADDELERTLSINDIKRFIEEPARLYFNWRLDTYFSRNSE 868 Query: 863 EIPDTEPFILEGLSRYQINQQLLNA 887 ++ D+E F+++ L + + +L++A Sbjct: 869 DLDDSEAFVMDNLQSWSLTTRLVDA 893 >UniRef50_C0QI08 RecC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI08_DESAH Length = 1206 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 400/1202 (33%), Positives = 590/1202 (49%), Gaps = 157/1202 (13%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLS--QKFGIAAN 59 L + H+N L+ L + V L E E +VQS GMAQWL++ ++ GI+A Sbjct: 16 LSIIHANHLEDLRDVAVHWVRTHPLG-VLETEQFIVQSKGMAQWLKLAVAADDGCGISAG 74 Query: 60 IDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 I+ LP +++W + +L IP +S ++++ + W+ ++LP LL + F+ L +L + Sbjct: 75 IETQLPGTWVWTAYRAILGNDTIPTDSPYDRERLVWRFFSILPTLLTDDIFSPLNRFLEN 134 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQW--ETGHLVEGLGE------AQAWQAPLW 169 D+D+R+ +QL+ + ADLFDQY VYR DWL QW E L+ G G+ AWQA LW Sbjct: 135 DTDQRRQYQLACRLADLFDQYQVYRADWLKQWAGEKDQLLTGGGQWVDIPPQHAWQAELW 194 Query: 170 KALVEYT----HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 + L +G R++L+Q F++ P LP RV + GIS+LP L+ Sbjct: 195 RRLRARVPASLRNIG-----RSDLHQAFLQKASDTRVRPEILPPRVIVFGISSLPKQVLE 249 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 L A+ ++ L NPCR++W DI EDREL + ++G+ Sbjct: 250 TLYAVSHLCQVLLFVNNPCRHFWADI-----------------IEDRELLRIDHARHSGK 292 Query: 286 LFNSDGEQDV-----GNPLLASWGKLGRDYIYLLSDLESSQ-------ELDAFVDV---- 329 V NPLLA+WGK GRDYI L+ ++ + E+D F DV Sbjct: 293 ATMPTPLDPVDVYRHANPLLAAWGKQGRDYIGLVYGYDTPETYRKNFAEIDLFRDVIAQD 352 Query: 330 TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVL 389 T LLH IQ IL+LE A ++++RP+ D +ITF V HS QREVE+L Sbjct: 353 TRGTLLHEIQQAILDLEPSA---------PDNESRRPIARGDRTITFQVAHSRQREVEIL 403 Query: 390 HDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQS 447 D+LL E L PRD++VM DI+ Y+P I+AVFG+ D R++P+ I+D ++S Sbjct: 404 QDQLLHSFETLDNLLPRDVVVMTPDIEGYAPHIEAVFGNLSLDDPRFIPFTIADHPGKKS 463 Query: 448 HPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGID 507 P+++A LL LPD R + D++ LL+VP RF E L L QW+ +GI WG++ Sbjct: 464 VPLVKALERLLHLPDLRMAARDLMDLLEVPAFQRRFGFKETDLPRLFQWIKGAGISWGLN 523 Query: 508 DDNVRELELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS 566 LP Q TW FGL RMLLGYA+ + + W ++ PYDE GL A LVG +A Sbjct: 524 KSQRASFGLPPDLDQTTWAFGLNRMLLGYAVGNNKA-WHNIEPYDEIGGLEAHLVGLVAG 582 Query: 567 LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP-DAETEAAMTLIEQQWQAIIAEGLG 625 ++ +L L E W + R + FF P DA + ++Q + Sbjct: 583 VVERLEALWTTLQSSACPERWCLILRTLARDFFEPVDASERLVLNRMDQVLDDWLNACTQ 642 Query: 626 AQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 A + L ++RD +++ + +SQ+FLAG VN TLMPMR+IPFKVVCLLGMNDG + Sbjct: 643 ADLDQELTLCVVRDYFLEKMAVQGVSQKFLAGMVNFGTLMPMRAIPFKVVCLLGMNDGAF 702 Query: 686 PRQLAPLGFDLMSQKP--KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERF 743 PR PL FDLM++ + GDRS R+DDRYLFLEAL+SA++ Y+S++GR ++DN ER Sbjct: 703 PRSHPPLDFDLMAEPGMYRPGDRSTREDDRYLFLEALLSARETFYLSHVGRDVRDNGERT 762 Query: 744 PSVLVQELIDYIGQSHYL------PGDEALNCDESE----------------ARVKAHLT 781 PSVLV +L DYI L P C E E + + HLT Sbjct: 763 PSVLVGQLRDYIDAGWTLEPGCAEPERPESECSEPERLGSECPESGQPNYEGSGLLDHLT 822 Query: 782 CLHTRMPFDPQNYQPGERQ--SYAREWLPA-ASQAGKAHSEFVQPLPFTLPETVPLETLQ 838 +H PF + E +YA+EW + + EF++ P + + L L Sbjct: 823 TIHPLQPFGRAYFSSPEAPLFTYAQEWRNCLGRREDQPREEFLETPPCV--DALTLSPLI 880 Query: 839 RFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF 898 F +PV+ F+ L + F E D EPF L+ L+ + + LL+A + + L+ Sbjct: 881 GFMKNPVKFFYNHCLSIRFDDISLENLDHEPFALDLLAPFNLGATLLSAGLAAGVSPELY 940 Query: 899 -----------------RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV--IACRQP-- 937 R G+LP FG + + + + R +A R P Sbjct: 941 PGRGGPCVVEAAVVEAADRLTRTGELPMAGFGTLAAKNLTAPVIAMLTRYGSLAERWPRA 1000 Query: 938 GQSMEIDLACNG-----VQITGWLP--------------------QVQPDGLLRWRPSLL 972 MEI L +++ WL Q P +L LL Sbjct: 1001 CDPMEIALVIEQDGWPEIRLDDWLDNMITTDFDDPGAILPQFARQQFYPRNILDKGGKLL 1060 Query: 973 SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMS 1032 + + LW+ H+ CA G + S L + D F PL A L ++ +R+G++ Sbjct: 1061 LLYPLVPLWISHVAGCAMGIDLTSHL-IAPDAVAAFHPLDKAAAFSVLMDILTVFRQGLA 1119 Query: 1033 APLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGN-MMVRGE-GDDIWY 1090 PL V ++G A++ A++ D Q+A+ + Y G+ RGE G D + Sbjct: 1120 RPLPVTAKTGVAYVA--------ALMAKDE--QRAKNDAARVYAGDGFNARGELGYDPYL 1169 Query: 1091 QR 1092 QR Sbjct: 1170 QR 1171 >UniRef50_B5JRL4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL4_9GAMM Length = 1150 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 395/1162 (33%), Positives = 581/1162 (50%), Gaps = 165/1162 (14%) Query: 29 PFEPEMILVQSTGMAQWLQMTLSQK-----FGIAANIDFPLPASFIWDMFVRVL--PEIP 81 P E+ LVQS GMAQWL++ ++ GI A F +P+ F+W + VL ++P Sbjct: 16 PLAEEVFLVQSNGMAQWLKLNIAADREDGGLGIQAGQRFEMPSRFLWSAYRAVLGNDKVP 75 Query: 82 KESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK---RKLFQLSSKAADLFDQY 138 S ++K ++ W+LM LLP+L+E + F +LRHYLT D + RK +QLS + AD FDQY Sbjct: 76 TASPYDKATLQWRLMRLLPELVEDDAFRVLRHYLTSDDETVATRKRYQLSQQLADTFDQY 135 Query: 139 LVYRPDWLAQWET---------GHLVEGLGEAQAWQAPLWKALVEYTHQLGQPR---WHR 186 VYR DWL W G L WQA LW+ L++ P R Sbjct: 136 QVYRADWLEDWAQQRDRLSRFGGQQARALPAEDHWQAQLWRRLIDDIETDSTPSHSVLSR 195 Query: 187 ANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRY 246 +++RFI+ L S LP R+ + G+S+LP L+AL A+G H ++ L+ NPC++ Sbjct: 196 GQIHRRFIDALHSGRDYSAYLPPRITVFGLSSLPYQTLEALAAMGLHTQVMLMVHNPCQH 255 Query: 247 YWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKL 306 YWGDI R+H+ P + ++A +S+ EQ PLLA+WG+ Sbjct: 256 YWGDI-------------RQHA------PTRQAVKDAVAAEHSESEQ----PLLATWGQQ 292 Query: 307 GRDYIYLLSDLESSQE-------LDAF---VDVTPDNLLHNIQSDILELENRAVAGVNIE 356 GRDY+ LL++ + ++ +D F D LL Q I +L++ + Sbjct: 293 GRDYLQLLAEFDQPEDYQQHFEKIDVFNSPADNASPTLLQQWQHSIYDLQS-------LP 345 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 E +K L+ D S+ FH CHS QREVEVLHD+LL E +P L P+D+IVMV DI Sbjct: 346 EEKNILSKDSLEG-DRSLRFHSCHSAQREVEVLHDQLLDAFERNPALRPQDVIVMVPDIQ 404 Query: 417 SYSPFIQAVFG-------SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSED 469 Y+P I+AVFG RYLPY ISD + ++P + A LL RF D Sbjct: 405 RYAPHIEAVFGLYKPRTGQERDPRYLPYTISDSSLKSANPTVNAIEQLLHSDQLRFSLSD 464 Query: 470 VLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP--------ATGQ 521 +L LL+ P L RF + L+QW+ ++G+RWG++ + + +LP A Sbjct: 465 ILGLLESPALQRRFGLENSDPSLLKQWLEQAGVRWGLNREQRAQHDLPSESSEPSEALSA 524 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 +TW FGL R+LLGY S++ W + P S AE +G L L+ L+ + + L Sbjct: 525 NTWAFGLNRLLLGY---SSEARWNGIEPSAPFSNSDAEAIGALWRLINTLDGFSQSLQHA 581 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEA----AMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 + +W L FF D +++A A+ +QW + A + DA+PLS++ Sbjct: 582 KTPSQWSQFIGQTLLEFFDSDDDSDAPLFDALNHALEQW---LDACQRADFNDAIPLSMV 638 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 R+EL LD ++QRFLAG +N +LMPMR++PFK+VCLLG+NDG YPRQ FDLM Sbjct: 639 REELLPALDDSGLNQRFLAGCINFASLMPMRAVPFKMVCLLGLNDGDYPRQQPRQDFDLM 698 Query: 698 SQKP--KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI 755 ++ + GDRSRRDDDRYLFLEA +SA++ LY+S++GRSI+DNS R S+L+ +L D I Sbjct: 699 RRREHYRPGDRSRRDDDRYLFLEAALSAREALYLSWVGRSIRDNSVRAQSILLAQLRDDI 758 Query: 756 GQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ---NYQPGERQSYAREWLPAASQ 812 L D + + +LT H P+ Q + +YAREW Sbjct: 759 AARFQLDND-------AHPTLLEYLTLEHPLQANSPRYLDTLQSAQYFTYAREWFDEPRS 811 Query: 813 AGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFIL 872 + + + ++ + +T+ L L+ P F + RL++ F D + D EPF L Sbjct: 812 SDR--NTTLKAIDSNEAQTLSLSDLRLLLRQPCDVFLRQRLKIAFDDGDDSVLDHEPFSL 869 Query: 873 EGLSRYQINQQL------------LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQ 920 +GL RYQ+ Q L LNA +++ A R+ ++G LP G FG E Sbjct: 870 DGLDRYQLGQSLLEDGAQDLSPSGLNAALDRAKA-----RWLSSGQLPPGEFGLTLIE-- 922 Query: 921 CQEMQQLADRVIACRQPGQSMEIDLACNGVQIT---GWLPQVQPDGLLRWRPSLLSVAQG 977 Q + +AD + R+ Q++ L + + GW L W L S A G Sbjct: 923 -QRLDDVADTLSRYREQSQALIQPLPPQAIVLADELGWT-------LEDWTRELASTASG 974 Query: 978 -------------------------MQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLA 1012 + WL HL +S G L L ++G R P+ Sbjct: 975 TPHYYQINLTPGTLRSGRQLKYHRLLNDWLNHLA-ASSLGYSLHTLILCEEGGVRISPMP 1033 Query: 1013 AEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFL 1072 AEQA HYL QLI YR ++ PL + E+G A+ T A+ + ++AR++ Sbjct: 1034 AEQAAHYLKQLISAYRNALAQPLPIQLEAGCAYAHTLATAKANHE-------EQARSEAQ 1086 Query: 1073 QAYEGNMMVRGEGDDIWYQRLW 1094 AYE + + ++ LW Sbjct: 1087 NAYESRLSASQQRCYASFEVLW 1108 >UniRef50_Q1QYD4 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYD4_CHRSD Length = 1210 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 377/1003 (37%), Positives = 535/1003 (53%), Gaps = 87/1003 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M V H+N L+ L L ++ R R P PE LVQS GMAQWL++TL++ GIAA++ Sbjct: 1 MFSVIHANHLEDLGTLALDVIRRHR-QPPLVPETFLVQSNGMAQWLRLTLAEADGIAASV 59 Query: 61 DFPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLLPQLLERED-------FTLLR 112 DFPLP+SF+W + VL + IP++S F+K ++W+LM LL + L+ E + LR Sbjct: 60 DFPLPSSFVWRAYRAVLGDDIPEQSPFDKTPLAWRLMALLERCLDPETSPDDPTCYAPLR 119 Query: 113 HYLTDDS-------------DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG-HLVEGL 158 YL ++ +R+ + L+ + ADLFDQYL+YRP+W+ WE G H L Sbjct: 120 DYLQGEALEASPLPGAAEEARERRRWHLAVRLADLFDQYLIYRPEWIEAWERGEHAPADL 179 Query: 159 GEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA 218 + Q WQ LW+AL+E + HRA L++RF++ P +P RVF+ GISA Sbjct: 180 PDDQRWQPALWRALIEDAPAAAREH-HRARLHRRFLDAARGLRKRPRDVPPRVFVFGISA 238 Query: 219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDI---KDPAYLAKLLTRQRRHSFEDR--E 273 LP L+AL AL +++ L+ NPCR+YWGDI +D A L+ Q R E R E Sbjct: 239 LPAQTLEALHALSGVVDVFLMIANPCRHYWGDIVSDRDAIKRAGRLSSQARREQEARHPE 298 Query: 274 LPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ----ELDAFVDV 329 P + + ++ NPLLA WG GRD+I L + ES + E D F D+ Sbjct: 299 APWLAELDEEALHLHA-------NPLLAGWGTQGRDFIVGLYEFESDRGFDLETDVFRDM 351 Query: 330 TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVL 389 P+ +Q ++ G E R R + D S++ HSP REVE+L Sbjct: 352 APEQSPTLLQQLQQDVLELVHPG---ERARREGGPRRIAEDDESLSLVSAHSPLREVEIL 408 Query: 390 HDRLLAMLEEDPT----LTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRR 443 HDRLLA E L PRDIIVMV DID Y+P I+AVFG P R++P+ I+D+ Sbjct: 409 HDRLLAAFERAEAAGQPLRPRDIIVMVPDIDRYAPCIEAVFGQLPPSHPRHIPFTIADQV 468 Query: 444 ARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR 503 A ++HP++ + LL LP+ R +VL L+VP F I E L LRQW+ SG+R Sbjct: 469 ASEAHPLMALALLLLELPERRLTVSEVLDALEVPAFRTAFAIDEAELERLRQWLAGSGVR 528 Query: 504 WGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM-----------------ESAQGEWQS 546 WG+ ++ L PA G+++WRFGL+RMLLGYA+ + G++Q Sbjct: 529 WGLSAEHRDSLGFPALGENSWRFGLSRMLLGYAVGEPSAGGARDDSEDSLGHAPSGDFQG 588 Query: 547 VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPD-AET 605 ++PY E GL A+L G +A+LL L L + WL + + A P A+ Sbjct: 589 IVPYAEVGGLEADLAGRVATLLSTLEQQCAALGERLTPMAWLGRLQALFAACLQPGTADE 648 Query: 606 EAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLM 665 M ++ + A + + V L ++RD L LD+ ++QRFLAG VN TLM Sbjct: 649 HDVMARLDAALARWAQQCRHADFEEPVGLGVVRDALRAELDEGGLAQRFLAGKVNFATLM 708 Query: 666 PMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQ 725 PMR+IPF+ V LLGMNDG YPR P FDLM+ +P+ GDRSRRDDDRYL LEA++SA+ Sbjct: 709 PMRAIPFREVYLLGMNDGDYPRVRQPQDFDLMATRPRPGDRSRRDDDRYLMLEAMLSARA 768 Query: 726 KLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHT 785 KL +S++G ++DN+ R PSVL+ EL+D + Q +P D A + D AR+ L H Sbjct: 769 KLTLSWVGHDVRDNTPRPPSVLIGELLDTLEQGWDVPEDGAGSRD---ARLARRLIETHP 825 Query: 786 RMPFDPQNYQPGE-RQSYAREW--LPAASQAGKAHSEFVQPLP----FTLP-ETVPLETL 837 PF + ++ + R +Y W L A + A + P P +LP E + L L Sbjct: 826 LQPFSRRYFERDDPRFTYEASWEALYATPEDTAAATADGAPSPDASMASLPDEPLSLGDL 885 Query: 838 QRFWAHPVRAFFQMRLQVNFRTEDSEIP--DTEPFILEGLSRYQINQQLLNALVEQDDAE 895 QR P + RL V++ D +P D EPF L+GL + + ++LL+ Sbjct: 886 QRVLRRPWTVYLG-RLGVHY--VDPHVPDEDNEPFALDGLEDHGLKRELLDGARGGVALA 942 Query: 896 RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADR----VIAC 934 + R R AG LP FGE E + + + + V AC Sbjct: 943 SVAERLRLAGRLPTAGFGEALIEPRLARLSRQVESWRRDVAAC 985 >UniRef50_Q1N2R1 Exonuclease V gamma subunit n=1 Tax=Bermanella marisrubri RepID=Q1N2R1_9GAMM Length = 1101 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 372/1116 (33%), Positives = 568/1116 (50%), Gaps = 107/1116 (9%) Query: 1 MLRVYHSNRLD-VLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML VY SNR++ +L L++ +++ + P +P+ I+V++ G+A WL+M L+Q GIAAN Sbjct: 1 MLNVYQSNRMEGLLGQLIKLVLQSD--SSPLQPKTIVVENPGLAHWLKMQLAQTLGIAAN 58 Query: 60 IDFPLPASFIWDMFVRVLPEIPK----ESAFNKQSMSWKLMTLLP--QLLEREDFTLLRH 113 I FP+P+ F W + ++ + + ES FNK ++W + +L Q+L+R F LL Sbjct: 59 IQFPMPSRFFWQLQRDLVSDSQEAWQTESIFNKDPLTWFVFDVLSESQILQRPGFELLAD 118 Query: 114 YLTDDSDKR-KLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-VEG--LGEAQAWQAPLW 169 Y+ D D+ +L+QLS++ AD++DQYLVYRPDW+ WE ++G L EA+ WQA LW Sbjct: 119 YVKDSDDESLRLYQLSTRIADIYDQYLVYRPDWIKSWEQQTFAIDGQPLEEAR-WQAELW 177 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + L + G P HRA+L + F+ L++A + LP V G S LP +++L Sbjct: 178 QILRQEAISRGFPLHHRASLTEDFLHLLQTAESIE-SLPKDVIFFGFSTLPKNQIESLAL 236 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L H ++HLL NP + YWGDI D A+L R + +P+ Sbjct: 237 LSSHCDVHLLTPNPSQTYWGDILDERLQARLRLR-------GKSVPM------------- 276 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRA 349 D GN LLAS G++G++Y LL DL+ +E D FVD +LL IQ+ IL L+ + Sbjct: 277 ---ADSGNALLASLGRMGQEYQRLLLDLDVYEEHDLFVDADDQSLLGRIQNQILHLQQSS 333 Query: 350 VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDII 409 +IE P D SI CHS REVEVLHD LL +L++ + P+DI+ Sbjct: 334 SQPEHIE------------PNDDSIKIVGCHSAMREVEVLHDHLLDLLQQS-DVDPQDIV 380 Query: 410 VMVADIDSYSPFIQAVFGSAPADRY-----LPYAISDRRARQSHPVLEAFISLLSLPDSR 464 VM+ D+ Y+P+I AVF +R +PY+ISDR ++ HP++ FI LL++P SR Sbjct: 381 VMIPDVARYAPYIDAVFQGGVDNRQGDRVRIPYSISDRPIQEEHPLINGFIQLLNMPKSR 440 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 +V+ALL++P + +FD+ E+ L ++QW+ + IRWG D+ + + LP Q+TW Sbjct: 441 MSYSEVIALLEIPAVYRKFDLDEKQLHQVKQWLELAAIRWGYDETHRSKQGLPKWQQNTW 500 Query: 525 RFGLTRMLLGYAMESAQGEWQSVLPYDES-----SGLIAELVGHLASLLMQLNIWRRGLA 579 G R+L+GYA S + LP+D S GL A +G + + + +L + Sbjct: 501 LHGFQRLLMGYAF-SERLAPNDELPFDISPVENVEGLEAASLGPVMNFVNELYEFVLATE 559 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 EW +D L FF E + + I Q + + + +P S++ Sbjct: 560 NLHSCTEWRYFLQDSLQRFFDVTTEEQPVLEQIHQVLENWLQTSQYVNFSHDIPFSVVYQ 619 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 + Q L + SQ F+ G VN CTL+PMRSIPFK V +LG+ND YPR + DLM Sbjct: 620 GVQQGLQKNNGSQHFMIGRVNFCTLLPMRSIPFKYVAVLGLNDQEYPRTVPGNSLDLMRF 679 Query: 700 KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 + GDR+RRD+DRYLFLEA++SA+Q L++SY + N+ PSV++ E +DY+ Sbjct: 680 NRRVGDRNRRDEDRYLFLEAILSARQGLWLSYRSLDQKQNTPMTPSVVLAEFMDYLD--- 736 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-QSYAREWLPAASQ------ 812 +N E+ L H F+ Q + G + SY W + Q Sbjct: 737 -------INFFSGESAASQILFTQHPLQAFNRQYFIAGSKLHSYQTNWFKSIYQLQSDAN 789 Query: 813 ------AGKAHSEFV-QPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 GK+ + QP + E V L TL RF+ P RAF +L + F Sbjct: 790 QTFQEEKGKSSVPVLSQPNGINMLE-VGLSTLVRFFQLPARAFLNQQLNIQFHNLADMHE 848 Query: 866 DTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 D EPF L GL RY +L ++ + RR + LP+G GE W+ Q ++ Sbjct: 849 DEEPFELSGLDRYAAKDYILQQTIQGRSIDP--RRLQPW--LPFGKIGERHWQRTRQSVE 904 Query: 926 QLADRVIACRQPGQS--MEIDLAC---NG--VQITGWLPQVQPDGLLRWRPSLLSVAQGM 978 + + + +EI+LAC NG + GW+ +V L+ + + + Sbjct: 905 DVLAEATSMGLENKEGPLEINLACEYQNGQNTSLVGWINEVYQGRLVLLKVAKFQAKHLI 964 Query: 979 QLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVL 1038 +L +E A G N S + +D P++A +A YL++L+ Y + PL + Sbjct: 965 ELLIESAALNAQGYN-YSGCLVTQDIRINVKPMSASEAKSYLNKLLSYYFSHQNQPLNFM 1023 Query: 1039 PESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQA 1074 PE+ AW A + D QKA +F++ Sbjct: 1024 PET--AW------ALYNPTTKQDLRSQKALQRFVEV 1051 >UniRef50_B8FB93 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB93_DESAA Length = 1085 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 356/1121 (31%), Positives = 570/1121 (50%), Gaps = 90/1121 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 LRVY SN L L + ++ ++ L P E E++L Q+ M +WL + L++ G AN+ Sbjct: 15 LRVYSSNSLQTLARQLADLLVKDPLP-PLEQEIVLTQNPVMGRWLYLELAKINGACANLR 73 Query: 62 FPLPASFIWDMFVRVLPEIPKE--SAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 LP +++ ++F V+P + E S F+ +M+W++M L + +E FT ++ YL DD Sbjct: 74 VTLPNAYMHELFASVIPPMENEEQSPFSPWAMTWRIMDALARFMEEPPFTEIQRYLQDDP 133 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 D RK F LS + A +FD Y+++RP+ + W+ G + WQA LW+ + + Sbjct: 134 DGRKQFGLSRRIAGVFDGYMLFRPEMILNWDHG-------KGGHWQAILWREISQ----- 181 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 G HR L F + L S + P LP R+ + G+ +PP +L +G+ + ++L Sbjct: 182 GFNDRHRPGLRTDFFKALRSGKSRPGVLPKRISLFGVWGMPPFHLDVFSGVGRMLPVYLF 241 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 NPC+ YW + ++ TR P R E L+ + GN L Sbjct: 242 HVNPCKEYWAHAFSDKQITRITTRS----------PFTRPEE----LY-----LEKGNAL 282 Query: 300 LASWGKLGRDYIYLLSDLESS-QELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 LAS G +GRD++ L++ L+ QEL D T LL IQ +ILE + EE Sbjct: 283 LASLGGVGRDFLGLVAGLDCHPQELYESPDRTA--LLGMIQGEILEFK---------EED 331 Query: 359 SRS--DNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 R + RPL P D S+ H CHSP RE+EVL+D +L L+EDP L P+DI+VM D+D Sbjct: 332 GRKTQEKARPL-PGDRSLAIHNCHSPMREMEVLYDHILKFLDEDPDLDPQDIMVMAPDMD 390 Query: 417 SYSPFIQAVFGS-APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 ++P+++AVF S P LPY I+ + R P + AF+ + L SRF + VL L Sbjct: 391 KFAPYVEAVFASPGPGGIRLPYCIAHKEVRTVSPSVNAFLEIFDLCQSRFEAAAVLDLAG 450 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 +P +A +F +E+ L L +W+ ++ +RWG + D+ + L LPATG +TW GL R++LGY Sbjct: 451 LPAVAEKFGFSEQDLETLARWIAQTRVRWGANADSRKALGLPATGDNTWESGLDRLMLGY 510 Query: 536 AMESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 AM E+ Q++ P+ + + A L+G A L R L + ++EW+ + + Sbjct: 511 AMAGLDEEFFQNISPFGDLAMEDAPLLGRFAEFTEALFQLSRKLEKSHEIQEWVKILEGV 570 Query: 595 LNAFFLPDAETEAAMTL-IEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 + F PDAE + + + + +A +G YG V ++++ +A L+Q S Sbjct: 571 VQEFLSPDAEDLHLLQIALSKTAKAQSEQG----YGREVAAAVVKAAVAGLLEQSSPSGS 626 Query: 654 FLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDR 713 L VN C++ IP KV+CL+GM+DG +PRQ +GFD M++ P+RGDRS R DDR Sbjct: 627 ILRRGVNFCSIAQGAGIPAKVICLVGMDDGAFPRQDGGMGFDYMARSPRRGDRSPRGDDR 686 Query: 714 YLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESE 773 + FL+A+I+AQ +L+IS+ G+ IQDN+ PS LV ELIDY+ + + +S Sbjct: 687 FSFLQAIINAQSRLHISFTGQGIQDNAALCPSPLVSELIDYV--------EAGFDLSDS- 737 Query: 774 ARVKAHLTCLHTRMPFDPQNYQ---PGERQSYAREWLPAAS--QAGKAHSE--FVQPL-- 824 L +H PF P + PG S++R++ AA Q G+ S F QPL Sbjct: 738 ----GPLVVVHKLQPFSPDYFSGQCPG-LFSFSRQYSQAADILQRGEKQSRQFFSQPLEE 792 Query: 825 PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL 884 P +++ LE L F+ P ++ + R+ V + E F L GL R+ + ++ Sbjct: 793 PEAQDKSISLEALCAFFRMPPKSILRDRVGVFLDAYTEAMDSAEAFSLGGLERHVLAGKM 852 Query: 885 LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC-RQPGQSMEI 943 + V+ + L+ +A G+LP+G G + ++ A + A + Q ++ Sbjct: 853 VEKRVQGRSSLDLYALAKAQGELPHGNVGAFAFNQLENQISPFARKAEAMLSEANQRLDA 912 Query: 944 DLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR-LFLRK 1002 D+ +I G L + P GL+ +R + + W+ HL CA E++ LF Sbjct: 913 DVMAGEWKIHGRLSPLGPWGLILYRTASAKAYDRLNAWIRHLFLCAVRPGFENKSLFAGT 972 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 D + + + A+ L+ L E Y +GM P PE+ A+ ++ + D Sbjct: 973 DAVYYYDNVKQNAAVTRLAALAEVYDKGMEFPAPFFPETSFAYAQSMFKTD-----DVGQ 1027 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME 1103 ++ AR K+ + G RGE D + + L P + E Sbjct: 1028 AMKAARNKWGPDFYG----RGEALDSYAALCFEGLDPLSRE 1064 >UniRef50_C7I4N7 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I4N7_THIIN Length = 1173 Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust. Identities = 403/1147 (35%), Positives = 575/1147 (50%), Gaps = 155/1147 (13%) Query: 2 LRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 L + NRL++L +AL+E++ ++ P E E+ILVQS G A+WL+M L+ + GI A Sbjct: 9 LFILQGNRLELLRDALLEWLAQQPLA--PLEEEVILVQSNGAAEWLKMALAAQGGICAAT 66 Query: 61 DFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQ----------------- 101 LP F+W + +VL P +S +K ++W+LM LL Sbjct: 67 RVELPGRFLWRTYRQVLGRAATPSQSPLDKPLLTWRLMRLLGAPGAELHPARPPWESRKL 126 Query: 102 ----------LLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWET 151 L+ + L YL R+L QL+ + ADL+DQY +YR DWL W Sbjct: 127 GAAQRFLEGGTLDADVCAPLLQYLQGQDLLRRL-QLAQRLADLYDQYQIYRDDWLDAWAQ 185 Query: 152 GH--LVEGLGEA------QAWQAPLWK-ALVEYTHQLGQPRWHRANLYQRFIETLESATT 202 G L++ LG A Q WQA LW+ L E + Q RA + + ++ L +A Sbjct: 186 GRDVLIDALGRATPLPEDQRWQAWLWRRVLAELSEAERQS--TRAQVQRAMLQALNTADI 243 Query: 203 CP----PGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLA 258 P LP RV + G S LP V L AL AL +++++ + NPCRY+W DI + L Sbjct: 244 AADPTRPALPRRVVLFGASHLPTVVLDALVALSRYVQVLIALPNPCRYHWADIIEGRELL 303 Query: 259 KLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE--QDVGNPLLASWGKLGRDYIYLL-- 314 + +R PL AG L E +PLLA+WG+ GRD++ L Sbjct: 304 RAAPARR---------PL-----RAGDLAQVSLEVMHAHAHPLLAAWGRQGRDFMRQLDA 349 Query: 315 -------SDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPL 367 +D D F D D LL +Q+ I +L + + E SR+ + Sbjct: 350 FDERANAADRPGLPRHDLFDDAPGDTLLEQMQAAIRDL-------LPLPEHSRT----LI 398 Query: 368 DPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT---LTPRDIIVMVADIDSYSPFIQA 424 D S+ FH+ HS QREVE+LHD+LL +L + L PRDI+VM DI ++P I+A Sbjct: 399 SAADRSVVFHIGHSAQREVEILHDQLLHLLAQPSGGRPLRPRDIVVMTPDIAPFAPAIRA 458 Query: 425 VFGSAPA--DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR 482 VFG P +R++P+ I+D AR + P+L A LL LP R ++ D+ ALLDVP +A R Sbjct: 459 VFGQYPPGDERFIPFDIADLSARATEPLLLALDWLLRLPQERILASDISALLDVPAIARR 518 Query: 483 FDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG-QHTWRFGLTRMLLGYAMESAQ 541 F + E L QW+ +G+RWG+D D+ L L A G Q++WRFGL RMLLGYA Sbjct: 519 FGLRPEDRPRLTQWIVGAGVRWGLDVDHRAHLGLGACGEQNSWRFGLRRMLLGYAGAGED 578 Query: 542 GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP 601 G +++++P+DE GL A LVG LA LL L W R Q +W RD+L+A LP Sbjct: 579 G-FENIVPFDEIGGLDAALVGPLADLLDVLQAWWRTALQNATPGQWAQYARDLLDAISLP 637 Query: 602 ----DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 + ET A + W + AQ+ +AVPL +LR+ LD+ RFLAG Sbjct: 638 QDLRERETRARLDDALSTW---LDHCAAAQFDEAVPLQVLRESWLSGLDEAAGGGRFLAG 694 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYL 715 V CTLMP+R+IPF+VVCLLGMN+G YPR+ FDL+ Q + + GDR+RR+DDRYL Sbjct: 695 GVTFCTLMPLRAIPFEVVCLLGMNEGDYPRRSPHSDFDLLHQPGQYRPGDRARREDDRYL 754 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 LEAL+SA++ LY+S+ GRS +DN+E+ PSVLV +L DY+ E + Sbjct: 755 MLEALLSARRMLYVSWAGRSPRDNTEQPPSVLVAQLRDYLAAGWQ---------GEGQGD 805 Query: 776 VKAHLTCLHTRMPFDPQNYQPGERQ--SYAREWLPA-ASQAGKAHSEFVQPLPFT-LPET 831 + A T +H PF + Y G+ +YAREW A A P+PF L E Sbjct: 806 LLAQRTTVHPLQPFS-RRYFEGDAALFTYAREWRQAHGGVAENGTGNGNGPMPFEPLTEP 864 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNF---RTEDSEIPDTEPFILEGLSRYQINQQLLN-- 886 + L+ L RF +PV+AFF+ RL V F +T+D D E F L+GL R+ + L++ Sbjct: 865 LSLQQLARFLKNPVKAFFRTRLDVVFDELQTQD----DDEVFALDGLDRHSLLSHLIDDP 920 Query: 887 --ALVEQDDA--ERLFRRFRAAGDLPYGAFGEIF--------------WETQCQEMQQLA 928 A+ E +A R R+ + +G LP A G W Q Q Sbjct: 921 QAAVYEGIEAAVARRVRQLQGSGALPMRALGSRVAQGLEQEALPLLRSWSELAQAYPQAV 980 Query: 929 DRVIACRQPGQSMEIDLACNGVQITGWLP---QVQP----DGLLRWRPSLLSVAQGMQLW 981 D+ + Q + +D +G++ G P Q+ DG + R L + W Sbjct: 981 DKRALIVE-HQDLRLDDWLDGLRTGGQSPIWMQLNASRLSDGKAQARAEKL-----IDAW 1034 Query: 982 LEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPES 1041 + + A G+ L + D P L +A +L L+ ++EGM PL + Sbjct: 1035 VRQMAASAC-GHAVQGLLIGADARVDLPSLPPAEARDHLHTLLAAWQEGMRRPLPFTART 1093 Query: 1042 GGAWLKT 1048 A LK Sbjct: 1094 ALAELKN 1100 >UniRef50_D0KY94 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY94_HALNC Length = 1183 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 387/1171 (33%), Positives = 577/1171 (49%), Gaps = 146/1171 (12%) Query: 7 SNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQ-------KFGIAAN 59 NRL++L+ ++ ++R L P E E LVQS GMAQWL++ L++ GIA Sbjct: 20 GNRLELLQQVLIDWLKRHPLA-PLENETFLVQSNGMAQWLRLGLARPRSAQDGGLGIATG 78 Query: 60 IDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 I+ LPA W + VL +P E+ +K + W+LM LLP L+ F LRHY+ Sbjct: 79 IEMILPARLQWQCYRAVLGTDFVPAEAPLDKDKLVWRLMRLLPNLIHTPSFLPLRHYIVT 138 Query: 118 DS--DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-----LVEGLGEAQAWQAPLWK 170 D D R+L+QL+ + AD FDQY VYR DWL W+ GH L + Q WQ PLW+ Sbjct: 139 DQRPDDRRLYQLALRVADQFDQYQVYRADWLRHWQEGHDDLPAHETRLPDEQRWQPPLWR 198 Query: 171 ALVEYTHQLGQPR------WHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYL 224 AL+ + R RA+L+ F + P GLP R+ + G+S++ P L Sbjct: 199 ALLADIRERQDDRDGIEFAAGRADLHTAFRKAASEQKARPEGLPRRIVVFGLSSIAPQVL 258 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG 284 L + ++ + F NPC YYWGDI D L + RR ++ + N Sbjct: 259 DVLAVASRWSQVIVCFLNPCEYYWGDIIDGHQLFAQRYQGRRP---------YKSAPN-- 307 Query: 285 QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDA-----------FVDVTPDN 333 E +PLLA+WG+ GRD + LL E + +L A VD + Sbjct: 308 -------ETAHAHPLLAAWGRQGRDLMRLLDQFEENAQLAANPLTLTPFESTVVDSAKSS 360 Query: 334 LLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRL 393 LL IQ DIL+L + R+ N+R D S+ FH+ HSP REVE+LHD+L Sbjct: 361 LLTLIQDDILKLRT--------PDELRALNRRLEPDQDHSLHFHIAHSPLREVEILHDQL 412 Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVL 451 LA E D +L P DIIVMV D+ Y+P I A+FG D +++P++ISD+ A ++ Sbjct: 413 LAAFEADTSLKPTDIIVMVPDMSLYAPAISAIFGRFGRDDPQHIPFSISDQAASGQVALI 472 Query: 452 EAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV 511 A +L+LP SR + ++L LL P+L ARF I+E L L W++ +GIRWG++ + Sbjct: 473 NALEQILNLPTSRLLRSELLDLLGSPLLLARFGISETDLTTLHDWIDSAGIRWGLNAQHR 532 Query: 512 RELELP-ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQ 570 +P Q+TW FGL R+LLGY W + P+ G+ AELVG LA L+ Q Sbjct: 533 EAFGVPPGMEQNTWAFGLNRLLLGYLSGDENAIWDEIEPHPVMDGISAELVGKLAQLVQQ 592 Query: 571 LNIWRRGLAQERPLEEWLPVCRDMLNAFFL----------PDAETEA-AMTLIEQQWQAI 619 L+ + + L+++ EW+ R ++ FF P+ + E + + + + Sbjct: 593 LDKYTQRLSEKCTPTEWVARLRRLMTDFFSLSDTQNHLDSPEIQIEMDTLARLHNELERW 652 Query: 620 IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLG 679 +A+ A + + + + +R RL+ R+ QRF+ G VN TLMPMR+IP++ + LLG Sbjct: 653 LADCSVAGFENEIDIETVRHAWLNRLEPHRLHQRFIVGGVNFATLMPMRAIPYRHIYLLG 712 Query: 680 MNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDN 739 M+D YPR+ P FDLM+ + + GDR+RR+DDRYLFLEAL++A+++L IS++GR+I +N Sbjct: 713 MDDANYPRRQTPNDFDLMNGRYRPGDRARREDDRYLFLEALLAARERLSISWVGRNINNN 772 Query: 740 SERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER 799 R SVLV +L DY+ Q +P E +C E + T H PF + + Sbjct: 773 KIRPASVLVSQLRDYLDQFWAVP--EPHSCSEIQ-------TTEHPLHPFSRRYFSADNT 823 Query: 800 Q--SYAREWLPAA-SQAGKAHSEFVQPLPFTLP-ETVPLETLQRFWAHPVRAFFQMRLQV 855 ++A +W S G + +E LP LP E + L TL F P R V Sbjct: 824 DLFTFANDWRAVHDSTQGTSKTE----LPIWLPKEPLTLNTLSDFLRTPAHTLLTKRFGV 879 Query: 856 NFRTEDSEIPDTEPFILEGLSRYQ----INQQLLNALVEQDDA----------------E 895 R +E+ D EPF L+GL R+Q IN ++ + L Q A Sbjct: 880 YLRPTATELEDHEPFELDGLQRWQLKKEINDRVRHQLAIQAHATSQMTTPTIEHISALIS 939 Query: 896 RLFRRFRAAGDLPYGAFGEIFWE-----TQCQEMQQLADRV--IACRQPGQSMEIDLACN 948 + + R G LP + + E Q Q +L R A + P S+ D Sbjct: 940 TQYGQARLGGRLPIVSPAFEYSELLPLIDQWQRWLELNLRFHQTAAKSPVLSIRSD---R 996 Query: 949 GVQITGWLPQVQP-------DGLLRW--------RPSLLSVAQGMQLWLEHLVYCASGGN 993 G+ + +P V D L R R + + + W HL+ + G+ Sbjct: 997 GIMLEASVPDVYSTESSIPNDTLARLIFIEGKLHRGQDIEWHKCVAQWPAHLLAQLTHGS 1056 Query: 994 GESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQ 1053 E+ L + + G F P+ E A +L L++ + + + AP + ++ C AQ Sbjct: 1057 VETYL-IGETGTLCFTPIEKEMAKQHLLTLLDAWFDAVQAPYPLACKTA-----FCLLAQ 1110 Query: 1054 NDAMLDDDSTLQKARTKFLQAYEGNMMVRGE 1084 + DS L+KAR + +EGNM V GE Sbjct: 1111 EMTPENTDSALKKAR----ECFEGNMKVPGE 1137 >UniRef50_Q8D2T9 RecC protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2T9_WIGBR Length = 1083 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 289/1127 (25%), Positives = 575/1127 (51%), Gaps = 53/1127 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M+ +Y SN++D+++ ++ I++ +++P + E+I+ S+ +++WL++ ++ I AN+ Sbjct: 1 MIYIYQSNQIDLIQKILSKILKNFPINNPMKKEIIITSSSNISEWLKLNITLNINILANV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +F SFIW + + +P ++ + +SW + Q++ + + + + + + Sbjct: 61 EFISLNSFIWKLVILTTKNVPFDNFAFRLMLSW----YIAQIIPKINKNIKIKNVYKNLN 116 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + ++F LS K ++L+++YL+++PDW+ + L ++Q +Q +W LV+ + Sbjct: 117 QFQIFYLSYKLSELYNKYLIFKPDWIDLLNFKKKSKKLEDSQYFQLIIWNLLVKKIKK-- 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 + + +++Y+ I+ +E + + R+FI GI +P +YL+ L+ L K I+IHL Sbjct: 175 EKDFCISSIYESCIQKIEKSNLIFEDIADRIFIFGIYYIPEIYLKILKTLSKKIDIHLFC 234 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPC YW DI + Y++ L+ EN + + + + LL Sbjct: 235 INPCCLYWFDIDNRFYISNLI-------------------ENKIKNKKNFFRKKIKISLL 275 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 + WG LG Y+ LL++L + E F DNLLH IQ+DIL + + Sbjct: 276 SFWGCLGAKYLKLLNNLNENIENKIFYKPKKDNLLHTIQNDILYNKYYNIIISKKFNKFE 335 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 N R L+ D+SIT H C + E+ L++ ++ + +++ + +DI+VM ++I+ YS Sbjct: 336 KKNLRVLNSKDNSITIHTCKNKYEEINSLYNFIVKITKDNKKICFKDILVMASNIEDYSS 395 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I ++F + + Y ISD + + ++ A ++L LP +F E + LL+ ++ Sbjct: 396 YINSIFNNINYK--INYFISDIKIYERFNIISAIFNILKLPKFKFSIEQIFYLLEFSSIS 453 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME-S 539 +F + E+ ++ L+ V G++WGI + ++ +++W + + + Y + Sbjct: 454 NKFKMKEDEIKMLKYLVINLGVQWGISNKRFKKCNANFEEKYSWNNIIKKTVSEYYTRIN 513 Query: 540 AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 599 + ++ + D I L+ L + + +LN W L+Q L EW V + ++ FF Sbjct: 514 NKVYFKYIYSNDLDEKKINSLIK-LENFISKLNYWYDYLSQPHLLYEWNDVIKKIIKNFF 572 Query: 600 LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPV 659 PD + + L+++ W II +G+ +Y + + L + L +R +E ++ + Sbjct: 573 DPDKKENYVLDLLKKNWNDIIFQGINTKYKKTIYIETLENILYKRFKKENFFKKNKFNSI 632 Query: 660 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEA 719 + C L + IP K++CLLG+NDG YPRQ FD + + K D++ R +D Y FL Sbjct: 633 HFCNLKLSKIIPSKIICLLGINDGTYPRQDINYNFDSIYKNLKNDDKNIRQEDLYSFLII 692 Query: 720 LISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAH 779 L+S+++ LYIS+I I + ++ S+++ ELI+YI S Y+ ++ N E+ +K Sbjct: 693 LLSSKEHLYISFIKNYINEERSKYISIIINELIEYISVSFYIKNCKSYNFLENINNIKKI 752 Query: 780 LTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQR 839 L + F ++ + + + +++ F + + + Sbjct: 753 LFKKYNNFYF----FRKEKIEIFNKKYFLNNININSDKKIFSK---------ISINEFFL 799 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFR 899 F+++P++ + + +L++NF E D E + + Y+IN L L++ + L + Sbjct: 800 FYSNPIKFWCKKKLKINFSKEHLY-KDNEFILKNKFNSYRINIILFEYLIKN---KYLNK 855 Query: 900 RFRAAGDLPY---GAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDLACNGVQITGW 955 + + Y G F EI E + ++ +L + + ++ ++ + I GW Sbjct: 856 KDLLKNTIKYFFDGVFEEIIIEKKYYQIIKLINNINKHLLMKKETKKVFFKLDRTIIFGW 915 Query: 956 LPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQ 1015 LP +Q GLLRW P LS+ G W+EHL+YC GG G+S +FL + W F + ++ Sbjct: 916 LPNLQNSGLLRWNPKNLSLQDGFLFWIEHLIYCIIGGKGDS-IFLGIESYWHFKNINYKK 974 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A H+ +L+ GY G+ P+ +L +SGGAW+ ++ + + ++ D+ T + AR+K + A+ Sbjct: 975 AKHFFKKLLVGYELGIENPIFLLNKSGGAWINHSFNKEKNKLILDEKTKKNARSKLISAW 1034 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQR-FLLPLFRFNQ 1121 +GN + G+ D + ++ LT + I+ +S++ F+ PL +FN+ Sbjct: 1035 QGNKFINGDSQDFYISKVIPFLTENNINKIINESKKYFIFPL-KFNK 1080 >UniRef50_Q480N8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480N8_COLP3 Length = 1198 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 323/1018 (31%), Positives = 527/1018 (51%), Gaps = 125/1018 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M+ +Y +N+++ L L+ I + L F E+I+VQ+ GM WL + ++Q+ GI+ N+ Sbjct: 1 MIHLYPANKMENLLLLLNKISQLSPLG-VFNQEVIVVQNAGMQHWLNLAIAQERGISMNM 59 Query: 61 DFPLPASFIWDMFVRVLP---EIPKESAFNKQSMSWKLMTLLP--QLLEREDFTLLRHY- 114 + LPA F+W + +R L ++P++S ++++ + W++ LL ++E +DF+ HY Sbjct: 60 RYALPAQFLWKL-IRSLASDEKVPEQSPYSREVLCWRIHALLALDSVVEDDDFSQATHYW 118 Query: 115 ----LTDDSDKR----------KLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-VEGLG 159 TD+ D K +QL+++ ADL++QYL++RP WL W+ G+ ++GL Sbjct: 119 RGENTTDEEDNNTVNDSKHAQLKRYQLATQLADLYEQYLIFRPQWLDNWQQGNFELDGLE 178 Query: 160 EAQA----WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICG 215 + A WQ LW+ L+ Q ++ L I ++ +P R+ G Sbjct: 179 KISASEHKWQGKLWRLLI------AQLPYNPVELMHDAIANIQDKKEL---IPPRISFFG 229 Query: 216 ISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELP 275 ++ + P++L + AL +H+E+H NPC YWGD+ Y L++ + D LP Sbjct: 230 LNTMAPMWLNFINALSEHVEVHFFHLNPCFSYWGDVVTEKYALNKLSQ-----WSDGVLP 284 Query: 276 LFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDL-----------ESSQELD 324 D + VGNPLLA+ G+ GR++I +L D +S+Q + Sbjct: 285 EELDVHSY-----------VGNPLLANLGQQGREFISMLQDYSTIDVELFEQAKSAQAIS 333 Query: 325 AFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPL----DSSITFHVCH 380 DVT ++LH +Q+DILEL + +RS + + P D SI CH Sbjct: 334 NNNDVT--SVLHQLQNDILELSD-----------ARSPDDEAITPKAVQHDDSIVITSCH 380 Query: 381 SPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF--------GSAPAD 432 S REV+ LHD LL +D +LTP+DI+VM I+ Y+P++ AVF G P Sbjct: 381 SALREVQALHDYLLHQFNQDKSLTPKDILVMCPQIEQYAPYVNAVFTRGWQDIAGEVPP- 439 Query: 433 RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRY 492 LP +I+DR A+ S P++ AF LL+LPDSRF +L+ L +P +A F I E L Sbjct: 440 --LPCSIADRSAKDSDPLVAAFTELLTLPDSRFGVSQLLSFLRLPAMANNFSINGEDLAK 497 Query: 493 LRQWVNESGIRWGIDDDNVREL-ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYD 551 + W+ ++ + WG+D + + L A TW+ GL+R+L G+A ++ +Q L Sbjct: 498 ISAWLEQATVHWGLDLTHKQSLLGQQANASFTWQQGLSRLLRGFAYADSEQIYQQQLLLS 557 Query: 552 ESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF----LPDAETEA 607 G + L+G L + QL+ + L + R +W + L+ F + E Sbjct: 558 NVEGSDSILLGQLMLFIEQLHYFSENLQRSRTAIQWQTFLLEQLSHLFSRVDADNVSNEN 617 Query: 608 AMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPM 667 ++ +IEQ ++ A + D + L ++ D L+Q Q S++F+ G V C+++PM Sbjct: 618 SLMVIEQAIAGLVEHCHHAHFEDDISLLIVVDYLSQHFSQGDASKQFMVGQVTFCSMLPM 677 Query: 668 RSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRSRRDDDRYLFLEALISAQQK 726 RSIPFKV+ +LG+NDG +PRQ LGFDLMS K K GDRSRR DDRYLFLEA+IS++ Sbjct: 678 RSIPFKVIAVLGLNDGEFPRQRQALGFDLMSLSKAKLGDRSRRGDDRYLFLEAIISSRNS 737 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYIGQSH-YLPGDEAL----NCDESEARVKAHLT 781 LY+SY GR+I++N+E+ PS++V+EL++Y+ Q + + +E L N D++ A Sbjct: 738 LYLSYQGRNIKNNNEKQPSLVVKELMEYLAQGYGWQFSEEQLTSDNNNDDTNAESNQSGI 797 Query: 782 CLHTRMPFDPQNYQPGERQSYAREWLPAASQA--------GKAHSEFVQPLPFTLPETVP 833 F P NY+ G S+ WL + G+ + ++ L T +TV Sbjct: 798 YQLAMQAFSPNNYR-GTWPSFDANWLALGQSSNSDNDESMGEGSTLAIESLAVTPEQTVE 856 Query: 834 L----ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 + + L RF+ HP + F Q +L + F D + D EPF + L Y + Q LL+A + Sbjct: 857 VSLSCQQLIRFYQHPAKMFAQQQLNLYFENHDVLLEDVEPFSVNHLQSYLLRQDLLSAAL 916 Query: 890 --------EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV--IACRQP 937 +D +E++ R +G P ++ ++QQ ++ + + C P Sbjct: 917 TGTIESPSNKDGSEQVITRAHLSGKFPDLPTTTNLFKDYQLDVQQFSEEISKVNCENP 974 >UniRef50_C8R0F3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0F3_9DELT Length = 1205 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 406/1179 (34%), Positives = 589/1179 (49%), Gaps = 120/1179 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEP---EMILVQSTGMAQWLQMTLSQKFGIAA 58 L +Y SNRL EAL++ + + DDP P E ++VQS GMA WL +L+Q+FGI A Sbjct: 25 LILYRSNRL---EALLDCLAASLQ-DDPPPPLSSECVVVQSRGMATWLGQSLAQRFGIWA 80 Query: 59 NIDFPLPASFIWDMF-VRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 + DFP P FI + E ++F+++ ++ ++ LLPQLL R +F LR YL + Sbjct: 81 HPDFPHPRRFIERLLRAAAGEEAATATSFSRELLTLAILELLPQLLSRPEFAPLRRYL-E 139 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTH 177 +D K QL+ + A +FDQYLVYRP+ + WE + WQA LW+ L + Sbjct: 140 GADDWKSLQLAERIAYVFDQYLVYRPEMVLAWEDRQAEPE--DDDRWQALLWRQLAQ--- 194 Query: 178 QLGQPRWHRANLYQRFIETLESATTCPPGL-PSRVFICGISALPPVYLQALQALGKHIEI 236 + G P A L+ + L+ P L P+RVF+ GI+ LPPVYL L K + Sbjct: 195 RFGSP----ARLFHQAKGRLQQGDLAQPELLPARVFLFGITTLPPVYLDLLNEAAKLLPC 250 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQ--- 293 HLL P R YWGDI P +LL R + NA + D E Sbjct: 251 HLLLFAPARDYWGDILSPKAANRLLLRHHP------------PAANADEQHGRDFEHLHL 298 Query: 294 DVGNPLLASWGKLGRDYIYLL---SDLESSQELDAFVD-----VTPDNLLHNIQSDILEL 345 D G+PLLASWG++GR++ +++ ++ D FV+ V ++L +Q DILEL Sbjct: 299 DTGHPLLASWGEVGREFQHIMEERAEYLQPAHGDCFVNPATVEVAGASILARLQRDILEL 358 Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPL----------DSSITFHVCHSPQREVEVLHDRLLA 395 + A A + + S D+ P + L D SI H CHSP REVEVL D+LLA Sbjct: 359 QEPAPAAAD-QRNSAGDSPNPNNRLPEQAAGAVDHDHSIVIHACHSPLREVEVLQDQLLA 417 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAF 454 ML+ + PRDI+VMV DI++Y+P I+AVF DR Y+P+ ++DRR + P+L+A Sbjct: 418 MLDVE-GYRPRDIVVMVPDIETYAPLIEAVFRRPTGDRRYIPFRLADRRVSREAPLLDAL 476 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 ++LL L R VL L + F + L+ L QW+ + +RWGID+++ R Sbjct: 477 LNLLDLARGRLPLSQVLDFLAREPVRQGFGLDGRQLQRLEQWLEQLRVRWGIDEEHRRRH 536 Query: 515 ELPATGQHTWRFGLTRMLLGYAMESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNI 573 + P Q+TWRFGL R++LGYA+ +LP+D+ G A+L G L L Sbjct: 537 DQPPDRQNTWRFGLDRLILGYALPGEDRYLVAGILPFDDIEGQDAQLAGVLLQFSQALFS 596 Query: 574 WRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQ---------AIIAEGL 624 + + + + W+ + R + AFF P+ A +QWQ A++ E Sbjct: 597 LVDEVREAKTMARWVELVRRAMAAFFAPEERAAAG-----EQWQRQSLRDALVALLQESE 651 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGV 684 A + L+ L RLD+ ++ FL G + CT++PMR+IPF VVCLLGMNDG Sbjct: 652 RAGLERPLELAAFLRLLRARLDEAGMAAGFLEGGLTFCTMLPMRTIPFPVVCLLGMNDGD 711 Query: 685 YPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 +PRQ P GFDL++ P+ GDRSRR DDRYLFLE+L+SA+++LYISY+GRSI+DN+E P Sbjct: 712 FPRQDNPAGFDLLAAAPRPGDRSRRRDDRYLFLESLLSARRRLYISYVGRSIKDNTELPP 771 Query: 745 SVLVQELIDYIGQSHYLPGDEALNCDESEARVKAH------------LTCLHTRMPFDPQ 792 S LV EL+D + +P A + +SE + H PF P+ Sbjct: 772 SPLVDELLDCL---ERMPEAVAESTADSEGTGEEERLADRRRRTRARFVVNHPLQPFSPR 828 Query: 793 NYQPGERQ--SYAREWLPAAS-------QAGKAHSEFVQPLPFTLPETVPLETLQRFWAH 843 +QP + +YA E+ P S Q G P L L RF+ + Sbjct: 829 YFQPDQPLLFTYAAEYAPVPSTRPVGTGQGGPDSPRPKAAATAPAPGAPTLAELHRFFRN 888 Query: 844 PVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN------ALV---EQDDA 894 P R + + L ++ + PD EP LE L Y++N+QLL A V E D+A Sbjct: 889 PSRWYAEHHLGLSLPPGEEARPDREPVFLERLDAYRLNRQLLQDPASVLAAVNAGEDDEA 948 Query: 895 ERLFRRFRAA-GDLPYGAFGEIFWETQCQEMQQLADRVIA--CRQPGQSMEIDLACN-GV 950 R R AA G+LP ++ +A + +P ++ +DL + Sbjct: 949 GRRLRHLLAARGELPLAGAAAPALAEAMAAVEPVAAFLATNPAGRPLPNLPLDLELGQHL 1008 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASG-GNGESRLFLRKDGEWR-- 1007 + G L GLLRWRP + WL+HL CA + + + L G+ + Sbjct: 1009 YLRGELRDRAELGLLRWRPGRSKPVFLLLAWLDHLALCARAPADQDHQCLLVARGKGQDE 1068 Query: 1008 -------FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDD 1060 F +A EQA L+QL++ +R G APL P AW Y A+ D Sbjct: 1069 GQADIRIFRAVAQEQAQSLLAQLLDLWRRGQEAPLPFFPACSHAWSDKIYQAKES---DP 1125 Query: 1061 DSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTP 1099 ++AR LQAY G G+G D + ++++ P Sbjct: 1126 AKLCRQARQAALQAYHGGDFHPGDGADPYVGLIFQEADP 1164 >UniRef50_C7LVF8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF8_DESBD Length = 1064 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 364/1119 (32%), Positives = 568/1119 (50%), Gaps = 102/1119 (9%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFP 63 ++ SNRL+ L L+ +++ DP EPE ILVQS GM +W+ M L+++ G+ AN FP Sbjct: 6 LHASNRLENLAELLAEVLKTPL--DPMEPETILVQSGGMQRWVSMQLARRHGVCANTRFP 63 Query: 64 LPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRK 123 P F + + + ++P+E +++ M W++ LL LL+ +F L Y+ +DS+ R Sbjct: 64 FPVGFAYALCRELRADLPREYPLSQERMLWRITHLLRGLLDEPEFAPLARYVQEDSELRS 123 Query: 124 LFQLSSKAADLFDQYLVYRPDWLAQWET-----GHLVEGLGEAQAWQAPLWKALVEYTHQ 178 + QL+ + A FDQYL++RP+W A+WE L+ G ++AWQA LW+ L+ Sbjct: 124 V-QLAERIAYHFDQYLIFRPEWAARWENHEPSGNFLLPGHVASEAWQARLWRELI---RD 179 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 +G HRA L +R I +LE T+ P LPSRV + GI LPPVYL L+AL +H ++H+ Sbjct: 180 MGGE--HRAALLRRAIASLEKGTSLP-DLPSRVCVFGIPTLPPVYLDLLKALSRHSQVHV 236 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 +PC+ YWGD+ L R+RR ++ AG+ + + +D Sbjct: 237 FLLSPCQKYWGDL--------LTHRERRRAY------------RAGEHASPERPEDAMP- 275 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 LA G +G++++ LL + + E + + D +L +Q+D+L+L+ R +F Sbjct: 276 -LAGLGAVGKEFLELLME-RDALETGLYEEPVGDTMLGQLQADLLDLDVRE----EKTDF 329 Query: 359 SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 S D+SI H CHSP RE+E+L D +L +L +D +L+P+DI+VM DI+ Y Sbjct: 330 S-----------DTSIQVHCCHSPLREMEILKDLILDLLAKDTSLSPQDILVMNPDIERY 378 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 +P IQAVFG+A D +P++ISDR+ ++ + F+ LL RF + V ALL+ P Sbjct: 379 APVIQAVFGTAGED-GIPFSISDRKPTKAAETIRLFLELLEFGQHRFEASRVCALLEAPP 437 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 + R + + + +WV SG+RWG+D D R+ L GQ+TW GL+R+ LGY M Sbjct: 438 VRQRLGLDASDTQRVLEWVRASGVRWGLDLDFRRKAGLGDFGQNTWESGLSRLYLGY-MT 496 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQL-NIWRRGLAQERPLEEWLPVCRDMLNA 597 A + P EL+G + + + +L +W R L R +W +L+A Sbjct: 497 GAADPLGGIAPLALRGSAEQELLGRVTAWIDELATLWSR-LRDTRTPADWQDCLLWILDA 555 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 FF P +A L ++ + +G DA + L + +RLD+ FLA Sbjct: 556 FF-PQDPAQAEHLLAIRKAVTDLTRDMGDFEADARTMLYL---IRKRLDESGGESGFLAS 611 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 + C L PMRSIPF+V+CL G+ +PRQ PLGFDLM+ +P+ GDRS R+DDRYLFL Sbjct: 612 GLTFCGLKPMRSIPFRVICLTGLTSTAFPRQDIPLGFDLMAARPRPGDRSHREDDRYLFL 671 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 E++ISA+ L ++Y G S DN E PSVLV EL+D++ + + G SEA V Sbjct: 672 ESIISARDNLILTYPGLSQSDNLEAPPSVLVSELLDFLDRGCTVDG-----LTPSEAIVF 726 Query: 778 AH-LTCLHTR--------MPFDPQNYQPGE---RQSYAREWLPAASQAGKAHSEFVQPLP 825 H L H + QN + + +R++ P AS AH+E Sbjct: 727 KHKLQAFHPDYFSAGSPIFSYSAQNRDAAQALFAEHQSRQFFPEASTLEGAHAEQEI--- 783 Query: 826 FTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFIL-EGLSRYQINQQL 884 + +E L RF HP R + L+++ + + D EP GL Y Q L Sbjct: 784 -----EIDIEELTRFLTHPCRHLLRA-LRIDPTGGEDDFLDEEPLATPTGLEAYGPLQDL 837 Query: 885 LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADR---VIACRQPGQSM 941 L +++ A L A LP G G C +++ LAD+ VI +P + + Sbjct: 838 LRTALDE-PAANLEGLLLAWQLLPPGQAGTDASRKLCSQIRALADQARAVIGDEKPLR-L 895 Query: 942 EIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLR 1001 ++ L + +TG + + D + RP+ + ++LW+ HL A+G +S Sbjct: 896 DLKLPLGRITLTGRI-DLHGDRFVTCRPAKTKSSDMLRLWVRHLAASATGHAVQSMHIGT 954 Query: 1002 KDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDD 1061 D FP A A + L L+ Y GM AP+ + P + A+ + + + Sbjct: 955 DDC---FPAPEAPNARNLLEGLLRLYTRGMRAPIHLFPRTSLAFAEARFTGRK------P 1005 Query: 1062 STLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPE 1100 +A + ++ +EG MV E DD L+R P+ Sbjct: 1006 KERPEALMQAMRQWEGGYMVSPERDDPHLAFLFRDTEPD 1044 >UniRef50_A1KVC5 Exodeoxyribonuclease V n=23 Tax=Neisseria RepID=A1KVC5_NEIMF Length = 1069 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 353/1108 (31%), Positives = 540/1108 (48%), Gaps = 105/1108 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SNRL+ L AL I + + L +PE I+VQS GM ++L L++ G+AAN+ Sbjct: 1 MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLERE--DFTLLRHYLTD- 117 F LPA W + +++P IP+ S F + M W+L+ L R +F +R+ L D Sbjct: 61 SFSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 S + +QL+ + AD+FDQYLVYRP W+ W+ G + GLG+ + WQ+ LW+ Y Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRL-GLGDDEIWQSKLWR----YL 175 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 Q HR L+++ + L+ LP R F+ GIS + P+YLQ L L +H ++ Sbjct: 176 DDGRQSAPHRVALWEKLLAALDKDK-----LPERYFVFGISTMAPMYLQLLHKLSEHCDV 230 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV- 295 + NP YWG++ + A Q+ G+ D+ Sbjct: 231 FVFALNPSGMYWGNVIE-----------------------------AAQILKGGGDPDLT 261 Query: 296 --GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGV 353 G+PLLAS GK GRD+ L+++E E F + D LLH +Q+DI L+ Sbjct: 262 QAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLK------- 314 Query: 354 NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA 413 S+N ++ D SI HSP RE+++L D+LL +L E P P DI V+ Sbjct: 315 -----MPSENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTP 369 Query: 414 DIDSYSPFIQAVFGSA-PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 I+SY+PFI+AVFG A P + LPY++SD + + P+ A L L +SRF + VL Sbjct: 370 HIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLV 429 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 LL+ + RF +TE+ L L V + + WG+D E+ TW+ + RM+ Sbjct: 430 LLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG----EMRGGTDQLFTWKQAVERMI 485 Query: 533 LGYAM-ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN----IWRRGLAQERPLEEW 587 LG+ + E WQ V + A L G A+LL L+ IWR Q + EW Sbjct: 486 LGWMLPEGGNPMWQDVSAWYADVNQTA-LFGRFAALLETLSDIVRIWR----QPATIGEW 540 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 + CRD+L F +A+ + ++ +E +W AE AQ+ +P + + + LD Sbjct: 541 VARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDS 600 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 E FL G + C+++PMRS+PFKV+CLLG+NDG +PR FDL+++ P +GDR+ Sbjct: 601 ES-EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRA 659 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 RRDDDRYLFLEALISA++ LY+SYIGR I+ + E PS L+ ELID + A Sbjct: 660 RRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTV----------AA 709 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ----SYAREWLPAASQAGKAHSEFV-Q 822 ++ + H F + +Q G R ++ A Q + F Q Sbjct: 710 MAGIGSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQ 769 Query: 823 PLPFTLP-ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQIN 881 P+ P + + RFW +PV+ + Q +L + EPF E QI Sbjct: 770 PVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF--EPQHADQIA 827 Query: 882 QQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSM 941 + + A E D + R A LP G G + W+ Q + D + + Sbjct: 828 ETYIEARREGRDFAQTAARIGAESLLPSGELGRL-WQQNFQTAAKQIDTAVLNSPKLPPL 886 Query: 942 EIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS-GGNGESR-LF 999 + +G + G L + G + + + Q + LEHL++CA E+R F Sbjct: 887 SYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTF 946 Query: 1000 LRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAML 1058 + + GE +A ++AL LS+ + + G + PL ++ A + Q Sbjct: 947 IVQSGETEILAEIAQDRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQ----- 1001 Query: 1059 DDDSTLQKARTKFLQAYEGNMMVRGEGD 1086 D ++ L+KA+T AY GN + +G+ D Sbjct: 1002 DWEAALKKAQT----AYYGNKVSKGQKD 1025 >UniRef50_C6MAC3 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Neisseriaceae RepID=C6MAC3_NEISI Length = 1068 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 353/1109 (31%), Positives = 543/1109 (48%), Gaps = 108/1109 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SNRL+ L AL I L+ E I+VQS GM ++L + L+++ G+AAN+ Sbjct: 1 MFYLYQSNRLESLAALFAGIQRVRPLESALAAEQIVVQSQGMRRYLSVYLARELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLL--PQLLEREDFTLLRHYLTD- 117 F LPA W + +++P+IP S F+ + M W+L+ L + +F +R L Sbjct: 61 QFSLPAGLTWQLMQKLIPDIPALSPFSPEVMRWRLLDLFRSERFQTTSEFENVRSILQSY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 S + +QL+ + AD+FDQYLVYRP W+ W+ G L+ GLGE + WQA LW+ Y Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQEGKLL-GLGEDEVWQAQLWR----YL 175 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 Q HR L+++ + +L+ A LP R F+ GIS + P+YLQ LQ + +H ++ Sbjct: 176 DDGNQSAPHRVALWEKLLSSLDKAH-----LPERFFVFGISTMAPMYLQLLQKISEHCDV 230 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV- 295 + NP YWG++ + A QL E D+ Sbjct: 231 FVFALNPSGQYWGNVIE-----------------------------AAQLLKGGDEADLS 261 Query: 296 --GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGV 353 G+PLLAS GK GRD+ L+++ +E F +V+ D LLH +Q+DI L + Sbjct: 262 QTGHPLLASLGKQGRDFFDFLTEI-GLEEQPVFEEVSDDTLLHCLQNDIQNLRMPS---- 316 Query: 354 NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA 413 E SR+D D SI HSP RE+++L D+LL +L E P P DI V+ Sbjct: 317 ---EHSRADLLG-----DGSIRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVLTP 368 Query: 414 DIDSYSPFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 +I+ YSPFI+AVFG A + LPY++SD + + +L A L L +SRF + VL Sbjct: 369 NIEPYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQSLLYALEQTLDLLESRFEVDKVLP 428 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 LL+ ++ RF +T + L L V E + WG+D + A TW+ L R++ Sbjct: 429 LLESGLVLRRFGLTADDLPLLHDTVAELNVHWGLDG----TMRGAADNLFTWQQALERIV 484 Query: 533 LGYAM-ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVC 591 LG+ + + WQ+V + + ++ G A+ + L+ + EEW C Sbjct: 485 LGWMLPDDGSPLWQNVSAWHGDVNRL-DVFGRFAAFIRTLSRLAAEWRKPASAEEWTERC 543 Query: 592 RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 RD++ + FLPDA+ + A+ EQ E A + +P + + + L E + Sbjct: 544 RDLVQSLFLPDADDQYALQQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSESQA 603 Query: 652 QRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDD 711 FL G + C+++PMRS+PFKV+CLLG+NDG +PR FDL+++ P++GDR+RRDD Sbjct: 604 G-FLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARRDD 662 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE 771 DRYLFLEA+ISA+ LY+SY+GRSI+++ E PS LV ELID I A+ Sbjct: 663 DRYLFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTIA---------AMTGRR 713 Query: 772 SEARVKAHLTCLHTRMPFDPQNYQP--------GERQSYAREWLPAASQAGKAHSEFVQ- 822 S+ + H H PF + + RQ YA QA SE ++ Sbjct: 714 SKG-LAEHWVEQHPLQPFSHRYFIADNISDDLFSTRQDYAEALNRPREQARPFFSEALEE 772 Query: 823 --PLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQI 880 P+P TV + RFW +PV+A+ Q L D EPF E +I Sbjct: 773 NTPVP-----TVWQDDFIRFWKNPVKAWLQQTLGWREPYRDEAWESAEPF--EPQRADKI 825 Query: 881 NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQS 940 L+A D + R A LP G G++ W+ Q + D + Sbjct: 826 AAAYLDARRHNQDFQETAVRLDAESLLPAGELGKL-WQQNFQAAAKRIDGALLQSPKLPP 884 Query: 941 MEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN-GESRL- 998 ++ +G + G L + G + + + Q + L LEHL++CA G + E+R Sbjct: 885 FAYEVPFDGQTLQGSLGNLYQCGQVFYLDRKPNAPQRIALLLEHLIFCAVGSSETETRQT 944 Query: 999 -FLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAM 1057 ++ + +P + + QA L + + + G + PL ++ A + Q+ Sbjct: 945 HIVQPEETTLYPEIPSSQAQEMLQKWLAFFNLGQTRPLPFFAKTSLAAAEAYGKKQS--- 1001 Query: 1058 LDDDSTLQKARTKFLQAYEGNMMVRGEGD 1086 + TL KAR ++Y GN + +G+ D Sbjct: 1002 --WEDTLNKAR----ESYHGNKVSKGQKD 1024 >UniRef50_Q89AB4 Exodeoxyribonuclease V gamma chain n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX5C_BUCBP Length = 1111 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 275/1126 (24%), Positives = 550/1126 (48%), Gaps = 31/1126 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y S + ++ ++ E L +P E+ +V + QW+++ +++K+ + NI Sbjct: 1 MFTLYKSLKFNLFVKSAFKVILNEPLLNPLTKEIFIVNNKETEQWIKIFIAKKYKVCTNI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F FI ++ + P++ +S F+K S+ WK++ + P + LL ++ ++ Sbjct: 61 KFFKLKHFILNILKQNTPKLYSKSEFSKYSIMWKIINI-PDIQH-----LLTKIVSKNNT 114 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 LF+++S ++LF YL YRPD++ +WE + Q WQ +W +++YT Sbjct: 115 YSTLFKIASSISNLFQLYLKYRPDYIKKWEQKSNIPKTRLKQKWQQIIWMRIIKYTKDAN 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 +P H +NL I+ ++ LP R+FI I+ + P Y L+++ K+ +H + Sbjct: 175 KPILHFSNLLYDSIKKMQRNNFINTKLPVRIFIFNITPITPQYAIFLKSISKYCSVHFFY 234 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 + D + + ++ + +L S+N +++ Sbjct: 235 ATAS---YND--KQMFSTSFIKFKQTQEISNNQLLSLLHSKNKNIIYHEIENFQKNTKFQ 289 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 + W + + LS L + ++ + ++LL +Q+ IL L ++ N E+ Sbjct: 290 SYWITYEYEQMLFLS-LIKDKTINLNFKIKQNSLLQYLQNKILNLH--SIQKKNNEQ--- 343 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 +NK + D S++ H CH+ RE+EVLH+ LL +L ++ + +D++V+ ++D+Y P Sbjct: 344 ENNKILILKTDKSLSIHSCHTLIREIEVLHNNLLNILNDNNDILFQDVLVISKNLDTYIP 403 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I +F SA + ++P++I+ + + + + L+ LP+ + LL++P L Sbjct: 404 YINQIFNSASSKNFIPFSINYKNIKNI-EFYKTILELIDLPNIELNINKITNLLNIPTLL 462 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE-LPATGQHTWRFGLTRMLLGYAMES 539 + I E+ + L Q +N++ I+W ++DN+ + L W GL R+ LG + + Sbjct: 463 KKVQINEQEIPILLQIINQTEIQW--ENDNILSNDWLSNDITKCWEHGLQRIFLGQIINN 520 Query: 540 AQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 + W++++PY+E S L + L SL+ LN W++ L++ + L W + +LN F Sbjct: 521 IDYKFWENIVPYNEFSTLYYNIFNKLISLISLLNKWKKILSKPKFLSHWDITFKKLLNDF 580 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 F + + LI ++W II G+ +Y + ++LL++EL + S +G Sbjct: 581 FTDHEQKQPEAKLIIKKWTEIIHSGMQEKYTKKISITLLKNELCNSVSYISQSNYLFSGK 640 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG-FDLMSQKPKRGDRSRRDDDRYLFL 717 + C + +IPFK++ L+G+ND + ++L+ P+ D + + L L Sbjct: 641 ITFCNNFTLTNIPFKIIYLIGLNDNISSNTHESFDIYNLLKLHPRAYDPCDEINHKNLLL 700 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPS--VLVQELIDYIGQSHYLPGDEALNCDESEAR 775 + L+SA++ YIS+ + + +N ++ + + + ++I YI Q Y+ N +++ Sbjct: 701 KTLLSAKKFFYISH--QIVSNNYKKLNNIPIAIDKIIKYITQYFYIKNKNKDNFNDNLKD 758 Query: 776 VKAHLTCLHTRMPFDPQNY-QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPL 834 +K+H+ +T + +N+ + ++ A+ +H EF++ LP +T+ Sbjct: 759 IKSHIYHNYTFYAHEKRNFLEKLNYPNFNTTIWKMATLINNSHKEFIKKLPSIKNQTINY 818 Query: 835 ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDA 894 TL FW +P++ FF +RL + T ++ + L +Y++N+ LL + + + Sbjct: 819 NTLILFWKNPIQTFFHVRLNIQLNTTKNKHMHQNKHFINKLDQYKMNKTLLKFFLYKQNT 878 Query: 895 ERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLAC-NGVQIT 953 +LF+ ++ G +P G I WE + + L D+++ ++ + + + N + Sbjct: 879 NQLFQYYKNIGIIPNNNIGNIIWEYTKKLITPLYDQIMKIKKILNNSKFCINVKNKCMLH 938 Query: 954 GWLPQVQPD-GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLA 1012 G L + GLLRW+ + LS + WLEHL+YC+ S L F L Sbjct: 939 GQLKNINSSGGLLRWKATKLSFQDIISCWLEHLLYCSLYKKHNSILIGTNHQIITFYKLE 998 Query: 1013 AEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFL 1072 + A +YL + I GY +GM P+L L +SG W+ YD +N+ + + A FL Sbjct: 999 NKTAKYYLKKYISGYFDGMEQPIL-LTKSGINWINAIYDKKNNKFYTNTNKNLNAYKIFL 1057 Query: 1073 QAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + GN + GE DD + Q++ LT + ++ I + ++++L P+ + Sbjct: 1058 NTWNGNNWITGEKDDPYIQKMIVYLTKKNIQKIYKTTKKWLTPILK 1103 >UniRef50_B1XZ24 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZ24_LEPCP Length = 1294 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 355/990 (35%), Positives = 496/990 (50%), Gaps = 124/990 (12%) Query: 2 LRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 L + H NRL++L E +++++ P E E++LVQS G+A+WL+M+L+Q+ G+ A Sbjct: 13 LLILHGNRLELLLETVLQWLAAHPLA--PLEEEVLLVQSNGIAEWLKMSLAQRVGVCAAT 70 Query: 61 DFPLPASFIWDMFVRVLPEI--PKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL--- 115 LPA F+W + +L P S +K ++W+LM +LP L R F L +L Sbjct: 71 RVELPARFLWRCYRAMLGRAGAPARSPLDKGPLAWRLMRVLPALAGRPGFEPLAQFLAGP 130 Query: 116 ---TDDS--DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV----------EGLGE 160 T D+ D + QL+ + ADL+DQY VYR DWL W G V L Sbjct: 131 GGPTPDAAPDLPRRLQLAQRLADLYDQYQVYRADWLIDWAAGRAVLTNPCTGAAPVALDA 190 Query: 161 AQAWQAPLWKALVE--YTHQLGQPR-------------WHRANLYQRFIETLESATTCPP 205 Q WQA LW+AL+ T QP R ++ RF+ L Sbjct: 191 EQRWQALLWQALIRDLGTTDADQPADAPAESAALAVLAGTRPAVHARFVAALAQDEAPQR 250 Query: 206 GLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQR 265 LP RV + G S LP L+AL AL H ++ L NPCR++W D+ D L L + R Sbjct: 251 PLPRRVVLFGHSHLPAQTLEALAALAGHTQVILAVPNPCRFHWADMIDGREL--LRSAHR 308 Query: 266 RHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS----- 320 R R+ + G L +D + +PLLA+WG+ GRD++ LL E Sbjct: 309 RQPL--------RNGRDLGALDIADAHAEA-HPLLAAWGRQGRDFLRLLDAFEEQLGGAE 359 Query: 321 --------QELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDP--- 369 +D F D D LL +Q+ I + V + E + + N PLD Sbjct: 360 AGALRGELPRVDLFDDEPGDTLLAQVQARIRD-------AVPLAEHA-ALNGPPLDAAAA 411 Query: 370 -----LDSSITFHVCHSPQREVEVLHDRLLAMLEE-DPTLTPRDIIVMVADIDSYSPFIQ 423 D SI FH+CHS REVEVLHD+LLA L +L PRDI+VMV D++ Y+P ++ Sbjct: 412 RQRAATDRSIEFHLCHSAMREVEVLHDQLLARLAAAKGSLAPRDIVVMVPDVEVYAPLVR 471 Query: 424 AVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAA 481 AVFG PA R++PY I+D R R HP+L A LL + + R + ++ L+DV LA Sbjct: 472 AVFGQYPASDARHIPYDIADLRPRGHHPLLLALEWLLRITEQRCTASELRELIDVAALAN 531 Query: 482 RFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ-HTWRFGLTRMLLGYAM--- 537 RF + + L L +W++ +G+RWG+D ++ L+L A G+ +TW FGL RMLLGYA+ Sbjct: 532 RFGLEGDDLPTLGRWLDGAGVRWGLDAEHRASLDLAACGEANTWAFGLRRMLLGYAVGDD 591 Query: 538 -ESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 + GE W + PY E GL A + G LA L+ L W R +W R +L Sbjct: 592 PAATPGEPWHGIAPYAEVGGLEASIAGALAELVEALQRWWREARTAATPADWDARARALL 651 Query: 596 NAFFLPDAETE----AAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 AFF P E E AA+ QW+ E A Y +AVPL++LR+ +D+ + Sbjct: 652 AAFFRPATEDERLLLAALHDALAQWREACDE---AGYAEAVPLAVLREAWLGTVDEPGLR 708 Query: 652 QRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ--KPKRGDRSRR 709 RFLAG V CTLMPMR+IPF+ VCLLGMN+G YPR+ FDL++ + + GDR+RR Sbjct: 709 SRFLAGGVTFCTLMPMRAIPFQGVCLLGMNEGDYPRRGVRSDFDLLAAPGQRRPGDRARR 768 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 DDDR L LEAL+SA+ +L++S+IGRS++DN+ + PSVLV +L DY+ P +AL+ Sbjct: 769 DDDRMLMLEALLSARAQLHVSWIGRSVRDNTAQPPSVLVAQLRDYLAAGWGRPLVDALSV 828 Query: 770 DESEARVKAHL--TCLHTRMPFDPQNYQPGERQ------------SYAREW----LPAAS 811 + + P D + G+ +YAREW + Sbjct: 829 EHPLQPFSRRYFEQTVEQGEPVDGPADETGDETGNDTAALRRGLLTYAREWRAAHAREDA 888 Query: 812 QAGKAHSEFVQPLPF---TLPETVP---LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 A + P P P P L L RF +PV RL V D + Sbjct: 889 AAAASDPLTAAPTPIDRRPAPADQPPLKLAMLTRFLRNPVADHLNERLGVRLALADEALA 948 Query: 866 DTEPFILEGLSRYQINQQLLNALVEQDDAE 895 D EP L L LL LVEQ D + Sbjct: 949 DDEPLGLHALD----ESILLRRLVEQGDVQ 974 >UniRef50_A4B914 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B914_9GAMM Length = 1080 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 354/1158 (30%), Positives = 566/1158 (48%), Gaps = 142/1158 (12%) Query: 1 MLRVYHSNRLD----VLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG- 55 ML Y SNRL+ VL+ LM I +P + +LVQ GM WL M L+++ Sbjct: 1 MLYTYPSNRLENLVLVLDTLMNNIGS-----EPLTADAVLVQHPGMQHWLSMELAKQSSN 55 Query: 56 -IAANIDFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLL--------PQLLE 104 + NI +PLP + WD+ +L +P+ S + ++ ++W+L LL P +LE Sbjct: 56 QLCMNITYPLPVRYFWDLIRLILGPDRVPERSVYTREILAWRLYHLLQQDAITANPLMLE 115 Query: 105 REDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAW 164 + + DS + FQL+ + ADL++QYL+YRPDW+ W+ A+ W Sbjct: 116 PNRYWQEQPAYLQDSRR---FQLAEQLADLYEQYLMYRPDWIEHWQES-------PAEHW 165 Query: 165 QAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYL 224 QA LWKALV+ Q H L + L LPS F+ GI++L P++L Sbjct: 166 QALLWKALVDEDPQ------HPLALMREASRRLSHPAQ---PLPSHFFVFGINSLAPIWL 216 Query: 225 QALQALGKHIE--IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSEN 282 L L + + IH+L+ NP +W D + K + R + + ++ Sbjct: 217 DFLSHLARSTDTDIHILYLNPSAEHW----DQLHTEKQALKTRLRQQQSAQQRASWIDDD 272 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDI 342 A LF + + NPLL S G+ G+ ++ LSD ++ + AF + L +Q D+ Sbjct: 273 A--LFTDEAD----NPLLTSLGQQGQVFVRQLSD-KADYDAQAFSAPEAETQLQTLQRDL 325 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 L L + ++ D ++ HS REV+ LHD LL DPT Sbjct: 326 LTLHDARSQPHTLDH-------------DGTLMISSAHSAFREVQGLHDWLLHRFNADPT 372 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-----LPYAISDRRARQSHPVLEAFISL 457 LTP+D++VM +++ Y+PF+QAVF + A+ LP +I+DR + + P + AF+ L Sbjct: 373 LTPKDVLVMCPNVEDYAPFVQAVFSRSFAELSEAVPPLPCSIADRNLKDADPTVAAFLEL 432 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 LSLPD+RF +++ L +P +A +F+++ + L+ + +W+ + I WG+D + + Sbjct: 433 LSLPDTRFEVSRLISWLRIPAIADKFNLSADDLQRITRWLERANIHWGLDGQHKAQWTGQ 492 Query: 518 ATGQH-TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 H TW+ GL R+LLG+A L + G A ++G L S++ QL R Sbjct: 493 ECTDHFTWKQGLDRLLLGFAYGDHDAFVHDELLLHDVEGADALILGRLTSIIEQLQNIRS 552 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII---------AEGLGAQ 627 L + R W D L L + + E+ Q+I+ A + Sbjct: 553 DLTRARTPSAWQSYLIDQLQIAML------STQSAYERSNQSILKAINDFTEFANKANLE 606 Query: 628 YGDAVPLSLLRDELAQRL-DQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 D +PLS++R L E+ +F+ G + +C+++PMRSIPF+VV +LG+NDG +P Sbjct: 607 QTD-LPLSVVRYVLENAFASPEQTGSQFMTGQITVCSMVPMRSIPFRVVAILGLNDGDFP 665 Query: 687 RQLAPLGFDLMSQKPKR-GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 R PLGFDLM+Q+P R GDRSRR DDRYLFLEAL+SA+ LY+SY G I+ N R PS Sbjct: 666 RNRPPLGFDLMAQQPPRLGDRSRRGDDRYLFLEALLSARDHLYLSYQGFDIRKNEARPPS 725 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYARE 805 ++++EL Y+ + + AR H+ L + PF P+NYQ GE S+ + Sbjct: 726 LVLEELFSYLERGYGF----------ERAR---HIRQLPLQ-PFSPKNYQ-GEYPSFNDQ 770 Query: 806 WLPAASQAGKAHSEFVQPLPFTLPETVPLETLQ---RFWAHPVRAFFQMRLQVNFRTEDS 862 W+ Q + E + LP T + P E++ +F++HP RAF + RL + + Sbjct: 771 WIHL--QRPEPEQELLNLLPAT--DLSPSESIHDWVKFFSHPARAFCEQRLGLYLNNTTT 826 Query: 863 E-IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC 921 E + D+EPF L L RYQ+ + ++AL+ Q+ + L ++ +AA P ET Sbjct: 827 ENLEDSEPFTLNHLDRYQLQTETVSALLNQESPDVLIQQAKAASAFPLSDLALTTAETWQ 886 Query: 922 QEMQQLADRVIACRQPGQSME---IDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQG- 977 Q+ D V A + +E + L ++G LP + LL WR L+ A+G Sbjct: 887 QQAASFTDLVRA--EGADRIEYRPVTLQTADWSLSGVLPIIDNQQLLSWR---LANAKGR 941 Query: 978 --MQLWLEHLVYCASGGNGESRLFLRKDGEW-RFPPLAAEQALHYLSQLIEGYREGMSAP 1034 +QLWL HL+ + L+ +D + +F E A L+ L +++G+ P Sbjct: 942 DILQLWLMHLLANSQKPTHSRGLYRGRDEKVEQFDLAPIEDATSLLNDLYRQWQQGLQEP 1001 Query: 1035 LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 ++ WL + D T +K KF Q ++ N RG D + + Sbjct: 1002 SVL----HSDWL---------PLYLSDPTNEK---KFWQIWDDNFNHRGLRYDPYIDFCF 1045 Query: 1095 RQLTPETMEAIVEQSQRF 1112 +Q+ P+ + + +R+ Sbjct: 1046 QQM-PDPQTTMDDMDRRY 1062 >UniRef50_D0IXL5 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Comamonadaceae RepID=D0IXL5_COMTE Length = 1195 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 383/1160 (33%), Positives = 557/1160 (48%), Gaps = 147/1160 (12%) Query: 30 FEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLP--EIPKESAFN 87 EPE++LVQS GMA+W +M ++++ G+ A LPA F+W + ++L E+P+ES + Sbjct: 47 LEPEIVLVQSNGMAEWFKMRMAEQQGVCAAAQVELPARFVWRSYRQILGRHEVPRESPLD 106 Query: 88 KQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLA 147 K M W+LM LLPQ L F + ++L +R L QL+ K ADLFDQY +YR DWLA Sbjct: 107 KTPMIWRLMRLLPQCLGEPAFAPIANFLRPGEPQR-LLQLAEKLADLFDQYQIYRADWLA 165 Query: 148 QWETGHLV--------EGLGEAQAWQAPLW-KALVEYTHQLGQPRWHRANLYQRFIETLE 198 WE G V + E Q WQ LW K L E Q + R L R ++ L+ Sbjct: 166 AWEKGEDVLRTAGRPDAPVPEGQLWQPQLWRKVLAELDEQ--ERAATRPALLARILDALQ 223 Query: 199 SATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLA 258 S L RV + G+S +P +Q L + +H ++ + NPCR++W D D L Sbjct: 224 SGQPPVTPLARRVVVFGMSQMPLSLMQFLSGIAQHSQVLIAVPNPCRFHWADAIDGRELL 283 Query: 259 KLLTRQR--RHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSD 316 + R+ + + ++PL +A +PLLA+WG+ RDY+ L Sbjct: 284 RQQRRRHADKGGKDLAQIPLAAMHAHA-------------HPLLAAWGRQSRDYVRQLDA 330 Query: 317 LESSQEL---------DAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPL 367 +++ ++ D + + L+ +++++ R V + E + + Sbjct: 331 FDTTGDIAVQWGWPRVDVYDEADASELIDA--PLLVQVQQRIRDLVPMSEHPAVE----I 384 Query: 368 DPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP-----TLTPRDIIVMVADIDSYSPFI 422 D SI FH H RE+EVLHD+LL L E L PR+++VM+ I+ +P I Sbjct: 385 AAADQSIVFHKAHGLVRELEVLHDQLLQWLAEPAAAGRAVLAPREVVVMLPSIEEAAPAI 444 Query: 423 QAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +AVFG R++P+ I+D AR S P++ A LL LP R ++ LLDVP +A Sbjct: 445 RAVFGQYGRHDARHIPFDIADVGARASSPLVTALQWLLKLPQQRCRLSELCDLLDVPAVA 504 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG--QHTWRFGLTRMLLGYA-- 536 AR + + L L W+ +GIRWG++ +L L A G W FGL RMLLGYA Sbjct: 505 ARVGLAADDLPQLTHWMAGAGIRWGLNHAQRAQLGLAACGDPNSAW-FGLRRMLLGYASG 563 Query: 537 --MESAQGEWQ---SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVC 591 +E+A E Q + PYDE GL AEL G LASLL ++ W + A E W Sbjct: 564 PALEAAFDEAQVFAGMEPYDEVGGLTAELAGSLASLLGRMLQWWQTAATAAAPEVWAQRF 623 Query: 592 RDMLNAFFLPDAETE----AAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 R +++ FF+ + + AA+ WQA + A + +PL + ++ Q L + Sbjct: 624 RSLMDDFFVAQGDEDQALCAALDTALVGWQAACEQ---AGFEALIPLEVAQEAWLQALSE 680 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS----QKPKR 703 ++QRF AG V CTLMPMR+IPF+VVCLLGMNDG YPR+ + FDLM+ Q+P Sbjct: 681 PALNQRFRAGGVTFCTLMPMRAIPFEVVCLLGMNDGDYPRRATRVDFDLMALPGQQRP-- 738 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 763 GDR+RRDDDR L L+AL+SA+ KLYIS+ GR ++DNSE+ PSVLV +L DY+ Q Sbjct: 739 GDRARRDDDRQLMLDALLSARSKLYISWAGRHVRDNSEQPPSVLVSQLRDYLRQGWQGED 798 Query: 764 DEALNCDESEARVKAHLTCLHTRMPFDPQNY-QPGERQSYAREWLPAASQAGKAHSEFVQ 822 L+ E + A T H PF + Q ++AREW G Q Sbjct: 799 SAGLSASERGELLLAQRTRQHPLQPFSRSYFEQASGLSTFAREWY------GAHEERAAQ 852 Query: 823 PLPFTL-----PET-VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLS 876 LP PE + L L F HP R+F + RLQV F ++ + D E F ++GL+ Sbjct: 853 VLPVVAAFEPDPEVPLTLARLTEFLRHPARSFLRNRLQVRFEQDEELLEDDELFSVDGLT 912 Query: 877 RYQINQQLLNALVEQ--DDAE--------RLFRRFRAAGDLPYGAFGE------------ 914 Y + QQL + Q DAE R + AG LP G Sbjct: 913 AYGLIQQLQQGVRTQLAHDAELDVGLQVQRQVQCLGRAGVLPLAGLGRREAEVLQAQATP 972 Query: 915 --IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQ-----------ITGWLPQVQP 961 + W+ Q + A R G ++ +D +G+Q W ++P Sbjct: 973 SLLAWQQQMRLWPHAAPRERLLLHSG-AVTLDDWMDGLQEREEPSSDAGHSRCWF-ALEP 1030 Query: 962 DGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLS 1021 LL + L + + +++ L ++G + + R W PL E A L Sbjct: 1031 RTLLN-KKGELQAHKLLPIYVRSLALSSTGSDTLMGVIARDTLVW-VQPLEPEAATQRLQ 1088 Query: 1022 QLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMV 1081 L++ + G + P L LP LK A D + QAYEG M+ Sbjct: 1089 ALMQLWLTGQNEP-LPLP------LKAAIAAGRDEL-----------NAAAQAYEGGYML 1130 Query: 1082 RGEGDDIWYQRL---WRQLT 1098 GE +D + R W LT Sbjct: 1131 GGECEDPSWARCYPDWEALT 1150 >UniRef50_C5TL47 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Neisseria RepID=C5TL47_NEIFL Length = 1099 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 352/1126 (31%), Positives = 552/1126 (49%), Gaps = 113/1126 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M ++ S+RL+ L + I + LD E ++VQS GM ++L + +++ G+AAN+ Sbjct: 1 MFYLFQSDRLESLAEMCARIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLL-----EREDFTL-LRHY 114 F LPA W + +++P++P S F+ + M W+L+ L + E E+ L L Y Sbjct: 61 KFSLPAGLAWQLMRKLVPDVPPLSPFSPEVMRWRLLDLFRSEMFQTAPEYENVRLKLESY 120 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE 174 L S +QL+ + AD+FDQYLVYRPDW+ W+ G L+ GLG+ + WQA LW+ Sbjct: 121 LY--SSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLL-GLGDDEDWQARLWR---- 173 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 Y Q HR L+++ + L+ + LP R+F+ GIS + P+YLQ L + KH Sbjct: 174 YLDDGSQSALHRVALWEKLLAQLDKSV-----LPQRLFVFGISTMAPMYLQLLHQISKHC 228 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++ + NP YWG++ D A + K R E +D Q Sbjct: 229 DVFVFALNPSSQYWGEVIDEAQILK------------------RGDE-------ADLSQ- 262 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILEL--------- 345 G+PLLAS GK GRD+ LS++E+ Q++ + + D LLH +Q DI L Sbjct: 263 AGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQKDIQNLIMPSERLYQ 322 Query: 346 --ENRAVAGVNIEEFSRSD-NKRPLDP----LDSSITFHVCHSPQREVEVLHDRLLAMLE 398 E A + + +D N ++P D S+ HSP RE+++L + L +L+ Sbjct: 323 QEEGEAGGQQALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQ 382 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPA-DRYLPYAISDRRARQSHPVLEAFISL 457 +P P DI V+ +I+ YSPFI+AVFG A A + LPY+ISD + + P+L A Sbjct: 383 NNPDWQPHDIAVLTPNIEPYSPFIEAVFGQAHAGSQALPYSISDVKLSRRQPLLYALAQT 442 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L L +SRF + VL LL+ ++ RF ++EE + L + V + WG+D + + Sbjct: 443 LDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHETVAGLNVHWGLD----QTMRDG 498 Query: 518 ATGQHTWRFGLTRMLLGYAM-ESAQGEWQSVLPY-------DESSGLIAELVGHLASLLM 569 TW+ + R+ LG+ + E G W+ V + D SG AE + LA + Sbjct: 499 KDNLFTWQQAVERLALGWMLPEGGNGMWRGVSAWYSNVNQLDVFSGF-AEFIRTLADMAA 557 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYG 629 Q W+ +E W+ CRD+L F PD + + A EQ E A++ Sbjct: 558 Q---WQ----APANVEIWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFD 610 Query: 630 DAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 +P + + + LD E + FL+G + C+++PMRS+PFK+VCLLG+NDG +PR Sbjct: 611 GLLPCKTVIRHIRRFLDSESQAG-FLSGGITFCSMVPMRSLPFKMVCLLGLNDGDFPRNT 669 Query: 690 APLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 FDL+++ PK+GDR+RRDDDRYLFLEALISA++ LY+SYIGR I++++E PS L+ Sbjct: 670 KAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDAEFAPSSLIS 729 Query: 750 ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG---ERQSYAREW 806 EL+D I G E SE VK H +R F G RQ YA Sbjct: 730 ELLDTIAAMTGKSGREL-----SEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYA--- 781 Query: 807 LPAASQ-AGKAHSEFVQPLPFTLP-ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 A +Q +A F++ L P +T+ L FW +PV+ + + L + D Sbjct: 782 -DALNQPPAEAQPFFLEALSQEEPGKTIHQGELVSFWRNPVKVWLKKNLSWDQPYLDGAW 840 Query: 865 PDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEM 924 EPF E +I L+A + +D E R A +P G G + W+ Q Q Sbjct: 841 ESAEPF--EPQHEGRIADAYLDARRKGEDFEDTAIRLNAESLMPVGELGGL-WQKQYQIS 897 Query: 925 QQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEH 984 + D + S + + + + G + + G + + + + LEH Sbjct: 898 AKNVDTELIRSNKRPSEPYEESFGDLVLQGTIGNLYECGRIVFLNQKDNAPNRIARLLEH 957 Query: 985 LVYCA----SGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPE 1040 L++CA S N ++ + E + + E A L + + +R G + PL + Sbjct: 958 LIFCAVAPKSVANRQTHIVSLGQTE-TYAAIGQEAARELLKEWLVYFRIGQNTPLPFFAK 1016 Query: 1041 SGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGD 1086 + A + Y+ + D D+ L+KA + + GN M +G+ + Sbjct: 1017 TSLAAAEE-YNKKEDW----DAALRKAH----EVFNGNKMSKGQKE 1053 >UniRef50_B5EPU5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU5_ACIF5 Length = 1130 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 334/934 (35%), Positives = 495/934 (52%), Gaps = 81/934 (8%) Query: 4 VYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDF 62 V H +RL+ L +A++E++ R P E E+ LVQS G+A+WLQ TL+ GI A + Sbjct: 12 VLHGDRLEWLSDAVLEWL--RAHPLRPLEEEIFLVQSNGIAEWLQWTLAAHEGICAAVRV 69 Query: 63 PLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD--- 117 LP F+W+ + RVL + S +K ++W+LM LLP+LL DF LRH++ Sbjct: 70 ALPGRFLWESYARVLGTGIVSARSPLDKAPLTWRLMRLLPELLAHADFAPLRHFIGQSQR 129 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--LVEGLGEA------QAWQAPL 168 D + +Q++++ ADLFDQY VYR DWLA W T L G GE Q WQ L Sbjct: 130 PDGALERRWQMAAQIADLFDQYQVYRGDWLADWTTDQSLLRRGDGERVTLPADQRWQPRL 189 Query: 169 WKALVEYTHQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 W+AL + H G + RA ++++F+ L + LP RV I G + LP L AL Sbjct: 190 WQALRQDLHSRGLDQAPGRAQVHEQFLAALNAGRPPVTPLPRRVVIFGAATLPEQSLTAL 249 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 ALG+ +++ L NPCRY+W DI L + R++ G Sbjct: 250 AALGRQMQVILAVPNPCRYHWADIVSGRELLRRERRRQ--------------PPRNGHDL 295 Query: 288 NSDGEQDV---GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDIL- 343 ++ +D+ GNPLLA+WG+ GRD++ LL + + L +D+ +L Q D L Sbjct: 296 SATATEDLHQFGNPLLAAWGRQGRDFLDLLDQFDETAALQRQMDIPRIDLFSEDQGDTLL 355 Query: 344 ---ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 +++ R + G+ E + D+ D S+ FH+ HS REV++LHD+LL Sbjct: 356 RQLQVQIRDLEGIRPETCTALDDN------DHSVVFHIAHSALREVQILHDQLLDRFATG 409 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISLL 458 L PRD+IVMV +I ++P I+A F + RY+PY I D +AR P+L A LL Sbjct: 410 -KLQPRDVIVMVPEIGGFAPLIRATFDQYDREDRRYIPYHIVDLQARDEQPLLLALDWLL 468 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 LP+ R ++ LL+ P L RF + E L ++ W+ +G RWG+ ++ L +P Sbjct: 469 RLPEQRCRQSEIRDLLNCPALRRRFGLELEDLPIVQHWLAGAGWRWGLSAEHRAALGMPH 528 Query: 519 TG-QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 G Q++ F L R+ LGYA + + Y E GL A L+G L LL +L W+ Sbjct: 529 CGSQNSGDFALQRLCLGYA-SGDDSHFSGIEAYGEVGGLDAALLGPLGQLLEKLAHWQHV 587 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAET-EAAMTLIEQ---QWQAIIAEGLGAQYGDAVP 633 L + E W R++L FF + EA + +E+ QWQ A A + +A+P Sbjct: 588 LGESLVPEHWGEAARNLLTDFFSASDDDDEALLQNLEEALRQWQTDCA---AADFNEALP 644 Query: 634 LSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 L++ R + LD + + FL G V CTL+PMR++P+ +VCLLGMN+G YPR+ Sbjct: 645 LAVFRGAWLEMLDAPDLGRSFLGGGVTFCTLLPMRAVPYPLVCLLGMNEGDYPRRSPRPD 704 Query: 694 FDLMS--QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 FDLM+ + GDRSRRDDDRYL LEAL++A+++LY+S+ GR ++N ER PS+LV +L Sbjct: 705 FDLMALPGMARPGDRSRRDDDRYLMLEALLAARRELYVSWAGRDQRNNHERAPSLLVAQL 764 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY--QPGERQSYAREWLPA 809 + I + + P E T H PF P +PG R ++AREW P+ Sbjct: 765 REAI-RDGWPPALE-------------KRTFEHPLQPFSPDYLAGKPGLR-TWAREWYPS 809 Query: 810 ASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 A + ++ P T P ++ L F+ P RAF++ RL+ +F ED D EP Sbjct: 810 PHSAPE-NAALPDPAEIT-PRSI--RELLEFFRLPARAFYRQRLRTDFNEEDPAEEDDEP 865 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRA 903 F L+ L Y + + LL A E++ +R+ R RA Sbjct: 866 FTLDSLETYHLLEDLLRA-AEKNGPDRIAERVRA 898 >UniRef50_C4ZM87 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Thauera sp. MZ1T RepID=C4ZM87_THASP Length = 1218 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 349/1015 (34%), Positives = 504/1015 (49%), Gaps = 150/1015 (14%) Query: 6 HSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLP 65 H NR++ L + + + L P E E+ILVQS GMA+W++M ++++ G+ A LP Sbjct: 22 HGNRIETLLDTVAGWLAQHPLA-PLESEVILVQSNGMAEWVKMAIARRAGVCAAAAVQLP 80 Query: 66 ASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRK 123 A F W + +VL ++P S +K +++W+LM LLP++L F + YL D+ R+ Sbjct: 81 ARFQWQTYRQVLGRAQVPARSPLDKTALAWRLMRLLPEVLAEPGFAPVAGYLADNDPGRR 140 Query: 124 LFQLSSKAADLFDQYLVYRPDWLAQWETGH-----------LVEGLGEA----------- 161 FQL+ + ADL+DQY V+RPDWL W G + G GE Sbjct: 141 -FQLALRIADLYDQYQVHRPDWLDAWGEGREALPDAGRGETPLTGRGETPLAGRGETPLP 199 Query: 162 --QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLES-----ATTCPPGLPSRVFIC 214 Q WQA LW+ +V+ Q R L+ R + L++ A LP RV + Sbjct: 200 EDQRWQARLWQRVVDELDP-QQRALTRPQLHDRVLAALDAIAEDAALHPAAALPRRVVLF 258 Query: 215 GISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDREL 274 G++ +P LQ L AL +H ++ L NPCR++W DI D + + R+R+ + REL Sbjct: 259 GMTHVPLPTLQLLAALSRHAQVLLAIPNPCRFHWADILDGREWLR-IARRRQPLRDGREL 317 Query: 275 PLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---------LDA 325 Q D +PLLA+WG+ RD++ L + +++ +D Sbjct: 318 ----------QDVGLDAMHLHAHPLLAAWGRQARDFVRQLDAFDDAEQTRARFPLARIDL 367 Query: 326 F------VDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVC 379 F DV LL +Q I +L A P+ D SI FH+ Sbjct: 368 FDDDQDTHDVAQPTLLVQVQRHIRDLTPLA-----------EHPHPPVPAEDRSIVFHLA 416 Query: 380 HSPQREVEVLHDRLLAMLEEDPT---LTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RY 434 HSP RE+E+LHD+LLA+L P L PRDI+VMV ID ++P I+AVFG R+ Sbjct: 417 HSPVRELEILHDQLLALLARPPGDKPLRPRDIVVMVPSIDDFAPAIRAVFGQYGRHDPRH 476 Query: 435 LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLR 494 +P+ I+D AR S P++ A LL + R D+ ALLDVP +AARF + EEGL L Sbjct: 477 IPFDIADLSARASSPLMGAVEWLLRIRHDRCRLSDLGALLDVPAIAARFGLAEEGLPRLT 536 Query: 495 QWVNESGIRWGIDDDNVRELELPATG-QHTWRFGLTRMLLGYAMESAQ----GEWQSVLP 549 W+ +GIRWG+D + L L A G Q++ FGL RML+GYA ++ + + P Sbjct: 537 GWMRGAGIRWGLDARHRAGLGLQACGEQNSALFGLRRMLMGYAAGRSEVTTDAPFAGIEP 596 Query: 550 YDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR----DMLNAFFLPDAET 605 YDE GL AEL G LA L+ +L W+ + W R D++ A D +T Sbjct: 597 YDEVGGLDAELAGALAHLVERLIRWQADSRRPATPAAWTQRLRALLADLVRAVDDTDRQT 656 Query: 606 EAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLM 665 AA+ ++W E A + +PL++ + L+ + +RF AG V CTLM Sbjct: 657 LAALDDALERWLEACDE---AAFEAELPLAVAAEAWLAALESPALDKRFRAGGVTFCTLM 713 Query: 666 PMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS----QKPKRGDRSRRDDDRYLFLEALI 721 PMR+IPF+VVCLLGMNDG YPR+ FDLM+ Q+P GDR+RRDDDR L LEAL+ Sbjct: 714 PMRAIPFEVVCLLGMNDGDYPRRSPRSDFDLMALPGQQRP--GDRARRDDDRQLMLEALL 771 Query: 722 SAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLT 781 SA++ LY+S+ GR+++DNS + PSVLV +L DY+ + + P V A T Sbjct: 772 SARRVLYLSWCGRNVRDNSVQPPSVLVAQLRDYLA-AGWSPA------------VVAERT 818 Query: 782 CLHTRMPFDPQNYQPGER-QSYAREWLPAASQA--------------------------- 813 H PF + ++PG +YAREW A +A Sbjct: 819 VEHPLQPFSRRYFEPGTPLLTYAREWRAAHVEAAAQDDAVPSHDGQANREATGRATRPTR 878 Query: 814 GKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 G+A S + P + + L F +PV+ FF+ RL V + D +PD E F + Sbjct: 879 GEAASPPLPPFVPDPAVPLTIAALAAFLRNPVKVFFRERLGVVYEDVDEALPDDEAFGFD 938 Query: 874 GLSRYQINQQL---------------LNALVEQDDAERLFRRFRAAGDLPYGAFG 913 GL + + ++L L+A + E R AG LP G G Sbjct: 939 GLEEHGLVEELAAAVLADLALLPPPELHAFALEAAVEAQLGRIERAGRLPIGGLG 993 >UniRef50_D1N1Q2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q2_9BACT Length = 1095 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 344/1089 (31%), Positives = 521/1089 (47%), Gaps = 132/1089 (12%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFP 63 +Y SN+L+ L A+ ++ DPF PE ++VQ+ GMA WL+ +++ I AN D P Sbjct: 5 LYSSNKLEDLAAIFRRMIFDRPGPDPFVPETVVVQTQGMATWLEQEMARDGSIMANFDMP 64 Query: 64 LPASFIWDMFVRVLPEIPKESAFNKQS-------MSWKLMTLLPQLLEREDFTLLRHYLT 116 SFI ++LP E AFN++ +W++ LL + R + L YLT Sbjct: 65 FLQSFILKTMRQLLPREELE-AFNRECRIFSPEVAAWRIFRLLGESAGR--WPELDRYLT 121 Query: 117 DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE-Y 175 RK QL+ + ADLFDQY VYR D L W G E G WQ L++ + + + Sbjct: 122 GSEPVRKRRQLAGRIADLFDQYQVYRGDLLEAWRRG---EEPGR-YVWQQQLYREIAKGF 177 Query: 176 THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 T G W R +F E + +P R+ + G+ +PP+YL L+ L E Sbjct: 178 TGPYG---WFR-----KFFERVPERDLWS-RVPVRISVFGVGTMPPLYLNFLRHLSAITE 228 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD---SENAGQLFNSDGE 292 ++L + NPCR +W ++E R FRD +N+G N+D Sbjct: 229 VNLFYLNPCREFW------------------DTYEKR----FRDRLADKNSGVFENTD-- 264 Query: 293 QDVGNPLLASWGKLGRDYIYL------LSDLESSQELDAFVDVTPDNL-------LHNIQ 339 V NPLL S G GR + L+ + S++ +FV ++L L IQ Sbjct: 265 --VENPLLTSLGAQGRSFFAQTLELPELARVRSAELFRSFVPEKSESLAYPGATMLQTIQ 322 Query: 340 SDILELENRAVAGVNIE--EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 DIL + R G ++E + D +R D SI H CH+ +RE+EVL D L+ + Sbjct: 323 EDILRMRRRGPDGDDVEVGRTRKIDYRR-----DRSIRVHSCHTIRRELEVLKDELIRLF 377 Query: 398 EE-DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFIS 456 +E + + PRD+IVM DI++Y P+I+AVF + Y ISDR RQ + E F+ Sbjct: 378 DESNGAVQPRDVIVMAPDINAYEPYIRAVFNDETFEGR--YGISDRSLRQESLIAETFLQ 435 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL RF + ++L+LLD P L +F I + + LR+ V +S IRWG D R Sbjct: 436 LLRQASGRFEASEILSLLDTPALRQKFRIADAEMETLRELVGQSAIRWGYDAAARRRFCD 495 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQ-----GEWQSVLPYDESSGLIAELVGHLASLLMQL 571 G+ +WR G R+LLG+AM + + GE+ LP + G AEL+G S + L Sbjct: 496 FEFGEFSWRCGFDRLLLGFAMTAPEDQLVNGEY---LPCGNAEGSDAELLGRFVSFVSSL 552 Query: 572 NIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 E W + + ++ FF PD E+ +T + A A + Sbjct: 553 AELGERTGNAHSAEAWAQLFHNAVDTFFRPDKESLPEITALRGTIDAFAAAARDGNCDEP 612 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 +PL + D+L+ + + FL G + C+++P+RSIP + V LLG+N+G +PR+ Sbjct: 613 LPLEAVTDQLSDSFSLVQNNMPFLRGGITFCSMVPLRSIPMQAVALLGLNEGEFPRRDIR 672 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 LGF++MS + + GDRSR+ +DRYLFLEAL++A++ L + Y G ER P+V + +L Sbjct: 673 LGFNIMSDR-RLGDRSRQMEDRYLFLEALLAARRTLMLFYHGSDPLTLEERPPAVPLADL 731 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAAS 811 ID + S ++ L + R FDP N E + Y+ E+ AA Sbjct: 732 IDVLKASF-----------RDFEVIRHSLQSFNFRY-FDPAN--GAELRCYSPEYFRAAR 777 Query: 812 Q-----AGKAHSEFVQPLPFTL-PETVP----LETLQR-FWAHPVRAFFQMRLQVNFRTE 860 AG A E LPFTL PE +P L L+R F HP F + R+ ++FRT+ Sbjct: 778 SLHGYLAGGAEPE--SRLPFTLRPEPLPPVLELAELERAFLNHP-EYFLRNRVGLSFRTD 834 Query: 861 DSEIPDTEPFILEGLSRYQINQQLLNALVEQDD---AERLFRRFRAAGDLPYGAFGEIFW 917 D EPF L+GL YQ+ +LL+ + D+ E +R A G LP G+ G + Sbjct: 835 RCTPEDKEPFTLDGLGSYQVRDRLLDWRLSSDEGPSGELAYRLMLAGGQLPLGSAGRNEF 894 Query: 918 ETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQG 977 ET +++ L A + + NG+ +TG + + PDG + L G Sbjct: 895 ETARRQVAALTPEQYALLTERHAEPFAVETNGITVTGSM-FLSPDGTTQ----LFVHGSG 949 Query: 978 -------MQLWLEHLVYCASGGNGESR---LFLRKDGE-WRFPPLAAEQALHYLSQLIEG 1026 L+ + GN +R F++ E P + A L +L+E Sbjct: 950 SSPKHLLRLRLRHLLLTVRNAGNIPARSLGFFIKDSVEVVELPEFEPDVAEAELGRLLEL 1009 Query: 1027 YREGMSAPL 1035 +R+G+S PL Sbjct: 1010 FRDGLSRPL 1018 >UniRef50_B4RTM0 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Alteromonas macleodii RepID=B4RTM0_ALTMD Length = 1206 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 294/940 (31%), Positives = 464/940 (49%), Gaps = 120/940 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SN+L+ L L+ ++ ++ LD F PE ILV+S GM W+ M ++ K G+A NI Sbjct: 1 MLALYPSNKLEHLSFLLTTLLRQQPLD-VFTPETILVESPGMQHWVSMQMANKQGVAMNI 59 Query: 61 DFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHYLT 116 DFPLP F+W+ VL ++PK+S + ++ ++W++ +L L++ + F + Y Sbjct: 60 DFPLPVRFMWNTARTVLGADKVPKQSPYRREVLTWRIDNVLQDNALMDSDAFEQVNKYWQ 119 Query: 117 DDSDKR----KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKAL 172 ++ + QL++ AD+++QYL+YRPDWL +WE + + WQ+ +W+ L Sbjct: 120 SAGSEQEQGLQRLQLATALADVYEQYLLYRPDWLFKWENNERAV-FDDMEVWQSEIWRIL 178 Query: 173 VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 + QP H A L+Q +E LE A P LP RV + I+ + P + AL + Sbjct: 179 AK-----DQP-LHPARLHQMMLEALE-AGNVPAHLPKRVIVFAINTMAPQLIAFFDALAQ 231 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE 292 HI+IH+ NP YWG+ K + AKLL + + E Sbjct: 232 HIDIHIFHLNPSVNYWGEAKSSSEQAKLLRLEGLKKWM---------------------E 270 Query: 293 QDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPD-----------------NLL 335 +D NPLL + GK GR+ LL++L++ E+ AF +PD LL Sbjct: 271 EDQSNPLLGNLGKQGRELFNLLTELDTF-EISAFD--SPDFESAGEGEDEHGQCHSRGLL 327 Query: 336 HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLA 395 I +DIL+ A +S NK D S+T HS REV+VLHD LL Sbjct: 328 DYIHNDILQ------AAHPQPLIHQSKNK------DDSVTVMCTHSALREVQVLHDHLLH 375 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG-------SAPADRYLPYAISDRRARQSH 448 L +D T TP DI+VM I++Y+PF+ AVF A LP I+DR + Sbjct: 376 WLSQDKTRTPSDILVMCPAIENYAPFVDAVFHRVGTKSLGATGQVRLPCTIADRSPMDAE 435 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 P++ AF++LL LPDSRF D+L L + + RF ++++ + + W+ ++ I WG++ Sbjct: 436 PLIAAFMALLQLPDSRFGVSDILDYLQLDSVQKRFSVSQDDIEQMVVWLKQAHIHWGLNS 495 Query: 509 DNVRELE--LPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS 566 + + + ++W +G+ R+L+G ++ VL + G A +G L Sbjct: 496 AHKTAVSEGVNLDDTYSWWWGIRRLLMGMLAPDSEMIVSDVLTIPDVEGQSALTLGKLIE 555 Query: 567 LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGA 626 ++ L + + L Q R E+W + +A F+P + + + LI + + A A Sbjct: 556 VVALLGEFAQELTQPRTPEQWSKALIALRDACFMPTKDQQQSWDLIAKVAADLAARCEEA 615 Query: 627 QYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 Y + L +RD L R F+ G V +C+++PMRSIPFK VC+LG+ND +P Sbjct: 616 NYEHELTLRQVRDLLLNRFSSPDAGNHFMTGQVTVCSMLPMRSIPFKKVCILGLNDSEFP 675 Query: 687 RQLAPLGFDLMSQKPKR-GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 R+ +PLG DLM+ +R GDRSRR +DRYLFLEA+IS ++ LY+SY G + +NSER PS Sbjct: 676 RKSSPLGLDLMASDGRRVGDRSRRLEDRYLFLEAIISTRESLYLSYQGNDVTNNSERQPS 735 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYARE 805 +++ E +D + ++ AL+ ++ H PF + G SY Sbjct: 736 LVLAEFMDMLENNY------ALSLEKYAVHAPLH--------PFSEPVF-AGALPSYETG 780 Query: 806 WLPAA-----------------------SQAGKAHSEFVQPLPFTLPETVPLETLQ--RF 840 WL A + A ++ Q + + L +Q R Sbjct: 781 WLRLADALQHNKFGANAADTNENADVVDTSLDTATADISQSPRALATQALRLSNMQIARA 840 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQI 880 + P+ F RL VN + + ++EPF L RYQ+ Sbjct: 841 FKDPLEHFSIQRLGVNLSQSFTLLENSEPFETNALLRYQV 880 >UniRef50_C4GHY2 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHY2_9NEIS Length = 1184 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 343/1222 (28%), Positives = 545/1222 (44%), Gaps = 200/1222 (16%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNRL+ + ++ I + L++PF E I++QS GM +++ L+++ GIAAN+ Sbjct: 1 MLHLYQSNRLEDIAQMLARIQQVAPLENPFAAEEIVIQSQGMRRYISQYLARETGIAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLP--QLLEREDFTLLRHYLTD- 117 F LPA W + +P+IP S F+ + M W+L+ L + + DF R L Sbjct: 61 RFSLPAGLAWRLMREAMPDIPALSPFSSEVMRWRLLALFQSDEFAQSPDFAAARQALAPY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA-----QAWQAPLWKA 171 + +QL+ + AD+FDQYLVYRPDW+ W G LV L + Q WQA LW+ Sbjct: 121 LHNGDYAAYQLAGQLADVFDQYLVYRPDWIETWAAGKLVPELAHSRSADTQIWQAQLWQH 180 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 L + + G P HR L++ +++L P LP R F+ GI+ L P+YLQ L L Sbjct: 181 LDD--GKQGAP--HRVQLWRTLMQSLARPN---PRLPQRYFVFGIATLAPMYLQLLAQLA 233 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 +H ++H+ NP + YWG+I +PA Q+ N Sbjct: 234 QHSQVHIFALNPSQAYWGNIIEPA-----------------------------QILNQTQ 264 Query: 292 EQDV---GNPLLASWGKLGRDYIYLLSDLESSQELDAFV-DVTPDNLLHNIQSDILELEN 347 D+ G+PLLAS GK GRD+ L+++E+ +LD++ + +LLH+IQ I Sbjct: 265 TADLSYQGHPLLASLGKQGRDFFNELAEVEAQLDLDSYTSEPQSPSLLHSIQYHIQSQTL 324 Query: 348 RAVAGVN---------------------------------------IEEFSRSDNKRPLD 368 A N S + K P Sbjct: 325 PETAHANGWLAAHQDYVHSQPRFQAAQQQLNQQYQTALAPYQGSLKTNAVSFGEAKTPNT 384 Query: 369 PLDSSIT--FHVCHSPQ----REVEVLHDRLLAM--LEEDPTL----------------- 403 P + F C +P+ R++++ H + LA+ L DP++ Sbjct: 385 PNTNETPDLFSGCLTPEQNAIRQIQLTHQQNLALAQLNADPSIQIHSAHSPLRELQILKD 444 Query: 404 ------------TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVL 451 P DI ++ I+ Y+P+I+A+FG + LPY++SD + P+L Sbjct: 445 QLLVLLAQHPDWQPHDIAILTPHIEPYTPYIEAIFGKH-SPYPLPYSLSDTQIAHRQPLL 503 Query: 452 EAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV 511 +A L+L DSRF ++ ++ALLD ++ A +T + L + + + IRWG D Sbjct: 504 DALAQTLALMDSRFEADKLIALLDNELILATHRLTRDDLPLIHDTIAQLNIRWGSDAAQR 563 Query: 512 RELELPATGQHTWRFGLTRMLLGYAM--ESAQGEWQSVLPYDESSGLIAEL---VGHLAS 566 + Q+TW+ GL R++LG+ + A W ++ P+ + A L +A+ Sbjct: 564 SQHSSQPNAQYTWQQGLERLVLGFMLPENPANPLWHNIAPHSSNPSHQAPLSRFAALVAT 623 Query: 567 LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA----E 622 L+ N W+ + +W +++N P ++ + QQ +A +A E Sbjct: 624 LIRHQNQWQTPAT----VPQWNERIHNLMNDLITPQSDDDHQA---HQQLEAALAQWQNE 676 Query: 623 GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND 682 A Y + ++ L Q L + + FL G + IC+++PMRS+PFKV+CLLG+ND Sbjct: 677 AQTAHYTQTINQTIAIQHLNQYLASQNDA-GFLRGGITICSMVPMRSLPFKVLCLLGLND 735 Query: 683 GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742 G YPR +DL++Q P++GDR+RRDDDRYLFLEA++SA++ LY+SYIG+ I+ + ER Sbjct: 736 GDYPRNTKAAPYDLIAQHPQKGDRARRDDDRYLFLEAILSAREVLYLSYIGKDIRTDEER 795 Query: 743 FPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP------ 796 PS L+ ELID I +P ++ + H H PF P+ Y Sbjct: 796 APSTLIGELIDTIAALTQIPANQ----------LNQHWITQHPLQPFSPKYYTGSLKNHS 845 Query: 797 ------GERQSYAREW----LPAA---SQAGKAHSEFVQPLPFTLPETVPLETLQRFWAH 843 RQ YA+ PAA AH QP +P T ++W + Sbjct: 846 SAAKLISTRQDYAQALNTPQPPAAPFLQNYTPAHETQEQP-------EIPQATFLQYWRN 898 Query: 844 PVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRA 903 P R + + L + P +EPF ++ + Q++ A D L A Sbjct: 899 PNRQWLKHTLGWQAPHTQAAHPSSEPFTID--NPRQLDTAYTQARQHNQDFAELATTLTA 956 Query: 904 AGDLPYGAFGEIFWETQCQEMQQLADRVI-ACRQPGQSMEIDLACNGVQITGWLPQVQPD 962 LP G F + + Q L +I + R P Q+ + L + T L Sbjct: 957 QSQLPTGEFNTLIAQEQAIAAAGLNSELIQSPRHPDQTGSLKLPTGTLNYT--LSHNHQH 1014 Query: 963 GLLRW---------RPSLLSVAQGMQLWLEHLVYCASG--GNGESRLFLRKDGEWRFPPL 1011 G + + + L + ++L L HL+Y A+ + +L PP+ Sbjct: 1015 GQILYAHQFLPNHNTQATLQASDSIELLLRHLIYSAAAPQPTPQPTHYLSLHQSITLPPI 1074 Query: 1012 AAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQ----NDAMLDDDSTLQKA 1067 A E A L+Q + Y++G P+ P A + Y + + A + K Sbjct: 1075 AQETAQATLAQWLAAYQQGQQHPIPFFPRVTLAVARAYYTGKTPDWDKAQKAAHAVYHKG 1134 Query: 1068 RTKFLQA-YEGNMMVRGEGDDI 1088 T F QA Y ++ G DD Sbjct: 1135 YTGFAQADYPETKLIYGRDDDT 1156 >UniRef50_Q1NSB7 Exodeoxyribonuclease V, RecC subunit n=3 Tax=Proteobacteria RepID=Q1NSB7_9DELT Length = 1155 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 363/1154 (31%), Positives = 558/1154 (48%), Gaps = 100/1154 (8%) Query: 2 LRVYHSNRLDVLEALME-----------FIVERERLDDPFEPEMILVQSTGMAQWLQMTL 50 L +Y SNR++ L A +E P E I+VQS GMA WL+ L Sbjct: 6 LLLYRSNRIEELLACLEAELAVASSAGSSAGSSAGSSAPLTAECIVVQSQGMAVWLEQRL 65 Query: 51 SQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL 110 +++FGI AN DFP P F + VL +++S + L+ LLP+L +R +F Sbjct: 66 AERFGIWANPDFPHPRRFHQRLLQAVLGRQAVADFSHRESFTLALLALLPKLPQRPEFAP 125 Query: 111 LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQ----AWQA 166 L YL D +D K QL+ K A LFDQY VYRP+ + WE G G A+ WQ Sbjct: 126 LARYL-DGADDWKCLQLAEKIAYLFDQYAVYRPEMVLAWERGEEQAGTAGAELADNRWQP 184 Query: 167 PLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQA 226 LW+ L + QLG P A L + F + P LP R F+ I+ LPP+YL Sbjct: 185 LLWRRL---SRQLGSPV---APLTEAFASLRQGRLAAPELLPPRAFLFAITTLPPLYLNL 238 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L + I IHLL +P R YW DI PA L ++ + RHS + L + E A Sbjct: 239 LDQAARIIPIHLLLFSPAREYWADIFTPAALREM---ELRHS----DAALLEEGEPAALH 291 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLL---SDLESSQELDAFVDVTPD-NLLHNIQSDI 342 + G+PLLAS G + R++ +L SD + + + + F + + LL +Q DI Sbjct: 292 LSG------GHPLLASLGTVAREFQDILEEQSDYQPATDGERFPENQENPGLLARLQQDI 345 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 +L+ A + +P D S+ H+CHSP REVEVL D+LL +L+ + Sbjct: 346 AQLKEPAAG--------EGEESQP-PTADDSLAIHICHSPLREVEVLQDQLLQLLDGE-E 395 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLP 461 +P DI+VMV DI++Y+P I+AVF P DR +PY I+DRR + +L+ + + Sbjct: 396 FSPHDIVVMVPDIETYAPLIEAVFNRPPGDRRRIPYRIADRRLSREGELLDTLLRFFEVA 455 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 R VL LL + + L+ + QW+ +S + WG+D+++ + PA Sbjct: 456 RGRLEVSAVLDLLAAEPVRRGLGLDGGQLQRIEQWLRQSRVCWGMDEEHRQHHGQPAQRL 515 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 +TWRFGL R+LLGYAM +A + +LP+ + G + G L +L + + Sbjct: 516 NTWRFGLDRLLLGYAMPAASDVFADILPHADIEGQESVTAGILLRFCEELFALVKLVQTP 575 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 + + +W + + +L + DA ++ + +++E A + L L Sbjct: 576 QTIADWATISQRVLISLGGDDAASDWQELCLRDTLAQLLSEADQAALTRPLELPAFLRLL 635 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 RLD ++ FL G + C ++P+R+IPF VVCLLG+N+ +PRQ FDL++ P Sbjct: 636 RGRLDGAGGTRGFLDGGLTFCNMLPLRTIPFPVVCLLGLNNDDFPRQEPAADFDLLAAAP 695 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 + GDR RR DDR++FLE+L++A+++LYISY+GRS++DN PSVLV EL+ + Sbjct: 696 RPGDRCRRRDDRFMFLESLLAARRRLYISYVGRSLRDNRSLPPSVLVDELLTCLAAMS-- 753 Query: 762 PGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ--PGERQSYAREWL------------ 807 P N + RV A T H PF P+ +Q G SYARE+L Sbjct: 754 PKAAGANDEAHRQRVAARFTVEHPLQPFSPRYFQNTAGPLFSYAREYLPPPASPDAAPAT 813 Query: 808 ---PAASQAGKAHSEFVQPLPF--TLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 P A A + V P + T + L L F+ HP + + RL + + Sbjct: 814 VSGPRAQLPAAADHDSVPPAAWMSTTSTAISLADLHDFFRHPAGWYGRRRLGLLPPQQQP 873 Query: 863 EIPDTEPFILEGLSRYQINQQ--------LLNALVEQDDAERLFRRFRAAGDLPYGAFGE 914 D +P L+ L RY+I + L + + + L+++ RA G+LP G + Sbjct: 874 AGVDRQPLELDNLDRYRIGSRLLQQPALLLPDGAAGEPPWQALYQQLRAGGELPPGRAAQ 933 Query: 915 IFWETQCQEMQQLADRVIACRQPGQSME---IDLA-CNGVQITGWLPQVQPDGLLRWRPS 970 ++Q LA +A G+++ +DLA + ++++G L Q LLRW PS Sbjct: 934 PALRELVADLQPLAT-FLAGNPGGKTLPPLVLDLALADNLRLSGELSQRATAALLRWSPS 992 Query: 971 LLSVAQGMQLWLEHLVYCASGGNGES--RLFLRKDGEWR-----FPPLAAEQALHYLSQL 1023 S + WL+HL CA + + + +D + F PL++E A L++L Sbjct: 993 RASAKLWLAGWLDHLALCAQAPEDQDWQTIMVGRDQQNGADIRIFRPLSSELARELLTKL 1052 Query: 1024 IEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRG 1083 + + G PL P S ++ AQ ++ + Q AR QA+ G+ RG Sbjct: 1053 LALFVAGQQGPLPFFPRSAYEFVAKTMTAQEES--QEAKGWQAAR----QAFYGDGYQRG 1106 Query: 1084 ---EGDDIWYQRLW 1094 E D + + L+ Sbjct: 1107 APPESADFYVETLF 1120 >UniRef50_Q60AZ6 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Methylococcus capsulatus RepID=Q60AZ6_METCA Length = 1138 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 344/1170 (29%), Positives = 554/1170 (47%), Gaps = 143/1170 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L ++ SNR ++L + F + DPF E ++V S + + L++ + +FG+ AN++ Sbjct: 5 LNIFFSNRFEILTQRL-FDDLAQGPADPFVAEQVIVPSLAVRRRLELDHADRFGVCANVE 63 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 F A ++W +V+ E+ S F +++W++ +L + L+ YL +D Sbjct: 64 FSYLAHWLWVQIGQVI-EVGASSPFAPATLTWRVFRMLGEEALVSAHPRLKSYLAR-ADG 121 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA----QAWQAPLWKALVEYTH 177 F L+ + A L +QYL YRPDWLA W G GL EA +AWQA W+ LV+ Sbjct: 122 AMRFDLAQRVAHLLEQYLTYRPDWLAAWLEGRPASGLPEASREDEAWQAAFWRTLVD--- 178 Query: 178 QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 +L R H + + R +E + T GLP+R + + +PP+YL L L + E+H Sbjct: 179 ELEVRREHPSAAFFRAVEAMGPEATRRAGLPARAHLFCLPTIPPLYLDILGKLARWTELH 238 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 L NPCR YW DI DP +R + E R L+R++ GN Sbjct: 239 LYVLNPCREYWFDIVDP---------RRLNYLEVRGDALYRET---------------GN 274 Query: 298 PLLASWGKLGRDYIYLLSDLESSQELD--AFVDVTPDNLLHNIQSDILELEN------RA 349 LLA+WG+ + +I LL D +D F +LL +Q IL+L + + Sbjct: 275 RLLANWGQQTQAHIDLLFDKAEGAVIDDAQFEPPARISLLAAVQEAILDLRDPEPGCCAS 334 Query: 350 VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDII 409 VAG D SI HVCHS RE+EVLHD+LLA+L DI+ Sbjct: 335 VAG------------------DRSIEVHVCHSLVRELEVLHDQLLALLARPDAPKVSDIL 376 Query: 410 VMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSED 469 V++ ++ +P I AVFG+APA R +PYAI+ R ++P A ++LL L SR + Sbjct: 377 VVMPRLEEAAPLIDAVFGTAPAARRIPYAITGLRRTVANPAAAALLTLLGLFASRCKASA 436 Query: 470 VLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLT 529 V L P++ ARF + + L + W +GIRWG++ + + + LP +H++ GL Sbjct: 437 VYEFLQRPLVHARFGLGLDDLECIHDWFQAAGIRWGLNGAHRKAVGLPEVERHSFCDGLD 496 Query: 530 RMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 R+ LGYA+ ++ LP G A +G A + L W R + + W Sbjct: 497 RLFLGYALGDVPVQFDGRLPAGSPEGSEALALGGFAHFVDLLTHWHRVWSTPATAQTWGE 556 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA----QRL 645 ++ AF + ET + +++ +AI A L +G+A + E+ + L Sbjct: 557 RLNAVVGAFLM---ETPETVPDLQEVREAIAA--LSRHWGEAAVTGTIEPEVVRVALESL 611 Query: 646 DQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD 705 + +G + + +RS+P++VVC++G+NDG +P P FDL++Q P+RGD Sbjct: 612 LDDPARGGTPSGRLTFTAMASLRSLPYRVVCVIGLNDGEFPHPDRPAEFDLIAQAPRRGD 671 Query: 706 RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE-------LIDYIGQS 758 R RR D+R LFL+ L++A+++LY+SY GRS++DN+ PS L+ E L+ G+S Sbjct: 672 RQRRYDERNLFLDLLLAARERLYLSYTGRSVRDNAPLPPSTLLSELLDYLLPLVAAAGES 731 Query: 759 -----------HYLPGDEALNCDESEARVKAHLT-----CLHTRMPFDPQNYQPGER--Q 800 H L + D + A+ ++ C R P+ G R + Sbjct: 732 PEEARRRLVVEHPLQAFSPVYFDAAVAKDPRLVSFNSEYCEALRAARSPRPSGEGVRACE 791 Query: 801 SYARE---------------WLPAASQAGK-------AHSEFVQPLPFTLPE----TVPL 834 S+++E PA AG+ H+ F P P PE L Sbjct: 792 SHSQEPEECSAILAERERADHGPAGPIAGEEQNDPDFEHAPFF-PAPMAAPEPEWREPNL 850 Query: 835 ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDA 894 + L+RF+ +P R + RL + ++E+ D EPF+ +R ++ ++LL ++ Sbjct: 851 DVLKRFFRNPCRYLLEQRLGLTLAEGEAELADDEPFLPAYFARGEVAERLLPLMLSAATE 910 Query: 895 ERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ-------PGQSMEIDLAC 947 E + RA + P G GE+ + + +++ A+R+ Q PG+ + + Sbjct: 911 EAVEVVARAGIEFPQGQLGELLLKGELTRIREYAERIAGQTQEEPLQPLPGR-LAFQIEG 969 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG--ESRLFLRKDGE 1005 ++G L QV GL+RWR + WL+HL A G + ++ +DGE Sbjct: 970 ETWTLSGALGQVWRRGLVRWRYDDTRPVDYLSGWLDHLFLNALAVRGVEPTTTWISRDGE 1029 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 +R P+AA Q L +L+ YREG+ PL P S AW Q + Q Sbjct: 1030 YRLRPVAAAQ--ERLRELVALYREGLRLPLHFFPRS--AWACALGLKQGGS--------Q 1077 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWR 1095 A + + +EG+ RGE +D+ Y++ R Sbjct: 1078 AAERQARKRWEGSGDRRGESEDLAYRQALR 1107 >UniRef50_A6DNF3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF3_9BACT Length = 1099 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 319/1131 (28%), Positives = 553/1131 (48%), Gaps = 132/1131 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERER------LDDPFEPEMILVQSTGMAQWLQMTLSQKFG 55 +R+ SN+L+VL + + ++ E+ L P +++++QS GMA+W+ M ++ G Sbjct: 1 MRISASNQLEVLVSQLADSLQNEKCRPEELLGRP--NDLVIIQSRGMAKWIDMQIADHNG 58 Query: 56 IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL 115 IA I++P +FI + V+ PKE ++++S++W++ LLP++ + FT++ Y+ Sbjct: 59 IATRIEYPFIRTFISSILVKC-SYSPKEDIWDRESLAWRIFKLLPEIESK--FTIIHDYV 115 Query: 116 TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA-------QAWQAPL 168 + +R FQL+ + A L D+Y+VYR DWL W G + +AWQ L Sbjct: 116 KTNQLRR--FQLAEQLASLIDEYMVYRHDWLQSWIQGKAFTQFNQGLEKELKHEAWQIAL 173 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPG---LPSRVFICGISALPPVYLQ 225 W+ L E N +Q ++ A P LP R+ I GI+ +PPV++ Sbjct: 174 WQKLCESAQ----------NSFQAALQNFLLADDIQPEVLELPPRIAIFGITNMPPVFVN 223 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 + L + ++ L NPC+ YWGDI R F L D G Sbjct: 224 FFEKLSQLTQVTLYHFNPCQEYWGDI-------------RMERFSAFPLQGKDDLGLRGP 270 Query: 286 LFNSDGEQ---DVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDI 342 +F+ E D+ + LL S G LGRD++ LL + S L+ + LLH IQ+ I Sbjct: 271 IFSRTFENEIPDLPHSLLKSLGLLGRDFLNLLIENTSFDTLEHYAPSESSQLLHRIQNGI 330 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPL--DSSITFHVCHSPQREVEVLHDRLLAMLEED 400 LE++ E+F D L D S+ CHSP+RE+E LHD L+ L ++ Sbjct: 331 LEMQ---------EDFE--------DDLVTDDSVKISSCHSPRRELEALHDYLVGSLADN 373 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 P L P+DIIVM +I Y+P I+ +F S P + L ++I+D+ R P++ +++ + L Sbjct: 374 PDLRPQDIIVMAPNIHDYAPHIRNIF-SNPDNMPLDFSITDQELR-GRPLVNSYLKIFEL 431 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 SR S D+L + + P +R+ + + + +R W+ ++ IRWG D + ELP Sbjct: 432 AKSRLSSNDLLEIFENPDFLSRYKLKVDDVHTIRDWIEQARIRWGKDAQQRADWELPEFE 491 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQL-NIWRRGLA 579 Q++W+FG R+L GYA + + + S+L G ++G + + QL +I+ Sbjct: 492 QNSWKFGFDRLLAGYAFDDPEL-YDSILSC--PIGGDGAILGKIKTAADQLFSIYEIITQ 548 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 +E+ L+ W +L + F +A+ + +I Q Q + Q + + + Sbjct: 549 EEKSLQNWCEYFSFVLKSNFEENADNQNEYNIILTQLQKMSERADLLQMNEVIAAEIAIK 608 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 L L+++ S F++ + C+L+PMRSIP KV+C+LG+N+G PR GFDLM++ Sbjct: 609 SLNSALEEQSSSHGFISRGITFCSLLPMRSIPVKVICMLGLNEGQLPRTNHRSGFDLMNK 668 Query: 700 KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ-- 757 ++GDR+ DDRYLFLE+L+SA++KLY+SY+G+S +DN E PSV++ E ++YI + Sbjct: 669 NWRQGDRTMSLDDRYLFLESLVSAREKLYLSYVGQSERDNEEIPPSVILAEFMEYIKKIA 728 Query: 758 SHYLPGDEALNC-----DESEARVKAHLTCLHTRMPFDPQNYQPGERQS---YAREWLPA 809 + ALN + E A L+ LH R + ER+ + + L Sbjct: 729 PDFQITQHALNAFNPRYFQDEDNDLASLSQLHFRAAQSLLKSREPEREVPALFCEQELDL 788 Query: 810 ASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNF-RTEDSEIPDTE 868 + K+ F+ + LE L +F+A+ + F + +L + + + SE+P+TE Sbjct: 789 PEEI-KSQDGFID---------LDLEDLAKFFANSAKTFLRCQLGTSLWKDQVSELPETE 838 Query: 869 PFI-LEGLSRYQINQQLLNALVEQD---DAERLFRRFR----AAGDLPYGAFGEIFWETQ 920 F + L +++I L+ AL+ +D D E + + A G LPYG G +E Sbjct: 839 AFAQVNALEQFKIKSTLIEALIHKDPDLDEESFKIQMQELVLADGSLPYGLKGIECFEQI 898 Query: 921 CQEMQQLADRVIACRQPGQSMEIDLA-----CNGVQITGWLPQVQPDGLLRWRPSLLSVA 975 + +++A++++ + + +++ +++ L + LL + P Sbjct: 899 YGDSEKVAEQILLHKGEHKEEQLNFTLTFELSEKIRLNCSLSGIYQQNLLTYHPGKDKFK 958 Query: 976 QGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPL 1035 ++ +++L AS + ++ +D ++ + + A L Q++E Y G+ PL Sbjct: 959 HLIKHCIKYLA-LASVEPRKKLHYINQDKAYQIHEI--KDARQSLEQILELYLSGLKKPL 1015 Query: 1036 LVLPES--------------------GGAWLKTCYDAQNDAMLDD-DSTLQ 1065 LP G A K YD+ N+A D D++ Q Sbjct: 1016 AFLPNCFQKYYEQRKLKKPKEHEVAMGLAEQKWAYDSYNNAFADSVDNSFQ 1066 >UniRef50_UPI0000E0F593 exodeoxyribonuclease V, gamma subunit n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F593 Length = 1147 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 285/928 (30%), Positives = 471/928 (50%), Gaps = 83/928 (8%) Query: 1 MLRVYHSNRLDVL-EALMEFIVE--RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIA 57 M V SN+ ++L + L+ FI + ++ + FEP I+V+S GM +L M +++K G++ Sbjct: 1 MFHVVPSNKQEILTQVLISFIQDDYQQGIRGVFEPTTIVVESQGMQHYLNMEIAKKTGLS 60 Query: 58 ANIDFPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLL--PQLLEREDFTLLRHY 114 NIDFPL + I+ + +L + +P++S F ++ + W + T+L P + Y Sbjct: 61 MNIDFPLVSREIYSICRSILGDKVPQDSPFKREYLVWNIFTILQDPGFISDPRAAYANAY 120 Query: 115 LTDDSDKR-KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA-QAWQAPLWKAL 172 + + + F+L+ + AD+++QYL+YR DWL WE G+L +GL + + WQ +W+ L Sbjct: 121 WQEQPEPLLQCFRLAKQLADVYEQYLIYREDWLTAWEQGNL-KGLNDTLEPWQQLIWEQL 179 Query: 173 VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 V P H A L I L T LP + I ++ L P ++ A+ + Sbjct: 180 VAI-----HPD-HPAALRAAAISQL---ATHQAKLPKSITIFAVNTLSPTQIEFFSAVAQ 230 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE 292 +I+++L F NPC YWGD+ K+L R+R S+ +L Sbjct: 231 YIDVYLFFLNPCSQYWGDVVSD----KVLLRERL-------------SKGIDEL----KA 269 Query: 293 QDVGNPLLASWGKLGRDYIYLLSDLESSQELDA--FVDVTPDN---LLHNIQSDILELEN 347 +D+ +P+LA+ G+ GR L D+ D+ F+ T D+ LL +Q+DI Sbjct: 270 EDISHPILANLGQQGRGLFNQLQDINYPDMTDSQLFIAPTADDAPSLLKQVQADI----- 324 Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 A A V D +D+SI H S REV+ LHD LL +L DP L P D Sbjct: 325 -ASAHVTPVTLHPED-------IDASIQIHSGFSAIREVQTLHDELLRILTADPDLQPHD 376 Query: 408 IIVMVADIDSYSPFIQAVF--GSAPADRYLP---YAISDRRARQSHPVLEAFISLLSLPD 462 I+VM ++ Y+PF+ ++F PA P +I+DR S P + F+ +LSLPD Sbjct: 377 ILVMCPSVEEYAPFVNSIFRPSYKPAQTDSPQLVCSIADRAPLNSEPTVMMFLDMLSLPD 436 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE-LELPATGQ 521 SRF ++ L +P + ++TE+ L W++ S I+WG++ + L+ A + Sbjct: 437 SRFSVTKIIDYLRIPSVQKNLNLTEDELTLCINWLSMSQIKWGLNQAHKASWLDNEAVTE 496 Query: 522 H-TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 H TW +GL+R+ LG Q D GL + ++G L L+ +L+ +R L Sbjct: 497 HYTWEWGLSRLALGCLHSEMQEHHDEFAYVDAVEGLNSRILGKLLVLVNRLSTFRAQLNG 556 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 ++ ++EW + ++M + F + A +IEQ + A Y + L+L+R+ Sbjct: 557 DKSIQEWERLLQEMSQSLFGETSTQLRAQQMIEQTISQFSKQVQTAGYESPIGLALVRES 616 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 L+ + +FL G V +++PMRS+PFK++C+LG+NDG +PR P DL++Q Sbjct: 617 LSDKFSTPDALNQFLTGQVTFSSMVPMRSVPFKMICILGLNDGAFPRIALPNSIDLIAQS 676 Query: 701 PK-RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 K RGDRSRR++DRYLFLEALISA+ LY+SY G+S +DN PS+++QEL+ Y+ Q Sbjct: 677 EKQRGDRSRRNEDRYLFLEALISARDYLYLSYQGQSAKDNQTIEPSLVIQELLHYLDQKF 736 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE-----RQSYAREWLPAASQAG 814 L + +E + + PF P + E + S+ + WL A Sbjct: 737 ILADPQ----NEKPEKFSERIVRRAPLQPFSPTLFASNEHDFEQKGSFDQGWLALA---- 788 Query: 815 KAHSEFVQPLPFTLPETVPLE--TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFIL 872 K+ + T+P+ + L+ + + +P++ + V + + D EPF L Sbjct: 789 KSGVLPAKTSTITVPDDIYLDHNDMTALFINPLKLHVNKQYDVVLDEYINVMDDVEPFSL 848 Query: 873 EGLSRYQINQQLLN---ALVEQDDAERL 897 +GLS+ ++ Q LN A ++ D+A + Sbjct: 849 DGLSKDKLLVQALNTASATIDYDNANDM 876 >UniRef50_B0TXZ0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Francisella philomiragia RepID=B0TXZ0_FRAP2 Length = 1100 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 299/1123 (26%), Positives = 516/1123 (45%), Gaps = 137/1123 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L Y SN+L+ L ++ +++ E+ D F P ++V S GM WL M L+Q IA N+ Sbjct: 3 LYTYPSNKLEYLVQVLSKLLDVEK-KDFFTPTQLIVGSRGMQHWLSMQLAQYRNIAMNLK 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 + + +I D+ + + + A+ K ++W++ L + + L +Y D K Sbjct: 62 YDMINGYILDICYELTAKQEYKKAYTKDILAWRIFRSLDSI---NNPKLQEYYHNSDLKK 118 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG--EAQAWQAPLWKALVEYTHQL 179 +QLS K A +F Y++YR +WL +WE G + + WQ LW+ALV+ Sbjct: 119 ---YQLSVKIAQVFTMYIMYRAEWLQKWEQGEYINPAKPENDEDWQMQLWQALVKEVQ-- 173 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 P +A Q+ L +P ++I G++ + P L + L K+I++++L Sbjct: 174 DTPYKVQAEALQK----LNQQNLEKLNIPKDIYIFGVNTISPKNLSFVFELAKYIDVNIL 229 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 + NPC YW D+ A L + D EL PL Sbjct: 230 YINPCSEYWYDLHKSKISAWLDSN-------DYEL----------------------QPL 260 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDN-----LLHNIQSDILELENRAVAGVN 354 LA+ G+ G+++ L + + QEL+ F ++ L N Q+ ++ L+ R + ++ Sbjct: 261 LANLGQQGKEFFNQLLENQEKQELEVFEKFDKNSLDFEKLADNNQTQLVSLQ-RNLLELD 319 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 + ++ D SI+ + CHSP REV++LHD+LL M++ DP++ PRDI+VM + Sbjct: 320 CQNHAKQK--------DLSISINSCHSPLREVQILHDKLLDMIKADPSIKPRDILVMCPN 371 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 I+ YSP+I +VF D+ LP +I+DR S P+ +FI LL LP+S F +L L Sbjct: 372 IEDYSPYIDSVFSRFSTDKKLPCSIADRTLLDSEPLAASFIELLQLPESNFEVNKILDYL 431 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ-HTWRFGLTRMLL 533 VP + +F IT+E L +R W+ ES I GQ +W +GL R++ Sbjct: 432 SVPAIQQKFKITDEQLETIRYWLKESCIHHS------------NNGQTFSWSWGLKRLMF 479 Query: 534 GYAMESAQGEWQSVLPYDESSGLIAELVGHLASL-----LMQLNI--------------- 573 G++ + LP ++ + G + LM + + Sbjct: 480 GFSYSDSNHIVDLKLPRQSATATPSYQRGISINYQELDQLMTIPVIEGSEIAELGGLYEL 539 Query: 574 ------WRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ 627 + + L + R LE W +M + F + + I+ + Sbjct: 540 LELLEKYSQELLKPRSLEAWQDYLLEMFDDVFNVTNDEQYIAKKIKDIIVKTVTTAKDVL 599 Query: 628 YGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPR 687 + + L +R L +L + I+ FL G V C++ PMR++PF+V+ +LG+N+G +PR Sbjct: 600 LTEEIDLYTIRYCLISQLSEPIINNHFLNGKVTFCSMTPMRNVPFRVIAMLGLNNGKFPR 659 Query: 688 QLAPLGFDLMSQKPK-RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 Q + + FDLM++ + +GDR++RDDDRYLFLE + SA+ LY+SYIGRS++ N E+ PS+ Sbjct: 660 QESAISFDLMARLGRVKGDRTKRDDDRYLFLETITSARDYLYLSYIGRSVKTNVEQQPSL 719 Query: 747 LVQELIDYIGQSH------------YLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY 794 +++ELI Y+ +++ LP E N H PF + Y Sbjct: 720 ILKELISYLQKNYSWHTLDNVIKDNKLPKSERKNIISDIKEYPLH--------PFSSKCY 771 Query: 795 QPGERQSYAREWLPAASQAGKA-HSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRL 853 E +SY WL K + + LP+++ + L + + P++A+ L Sbjct: 772 -ADEYRSYDEAWLKLLQSEPKVFYDSKLLSNSVNLPKSLSISKLVKIFEDPIKAYTNYGL 830 Query: 854 QVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFG 913 ++ + E+ D+EPF + L +++ Q LLN L D E + + +G LP Sbjct: 831 ELYLEDDFEELEDSEPFDINSLDKHKFKQDLLNTLENNKDKELTIKTAKLSGKLPESVLT 890 Query: 914 EIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLS 973 E + + +Q+L D+ + ++ ++ ++ + +L + S Sbjct: 891 ENEINKEVESIQKLLDKANLANYESKYFHQEILGYELEANC---HIKDNQVLLYTSSTFG 947 Query: 974 VAQGMQLWLEHLVYCASGGNGESRLFLRKDGE--------WRFPPLAAEQALH-YLSQLI 1024 + +L+L L+ S S ++ D + + L A+Q L YLS Sbjct: 948 IKHRFELYLTALLVALSEQQDISATYVYFDKDKNQADTNTFAISHLGAKQLLEKYLS--- 1004 Query: 1025 EGYREGMSAPLLVLPESGGAWLKTCYDAQ-NDAMLDDDSTLQK 1066 + +S P LV + A ++ + Q DA L + +T QK Sbjct: 1005 -NAEKIVSKPSLVHLDLAKAIMEYVKENQKKDASLVEKTTKQK 1046 >UniRef50_Q14GK3 Exodeoxyribonuclease V gamma chain n=16 Tax=Francisella RepID=Q14GK3_FRAT1 Length = 1079 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 278/1031 (26%), Positives = 493/1031 (47%), Gaps = 121/1031 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L Y SN+L+ L ++ +++ E+ D F P ++V S GM WL M L++ IA N+ Sbjct: 3 LYTYPSNKLEYLVQVLSKLLDVEK-KDLFTPTQLIVGSRGMQHWLNMQLAEYRNIAMNLK 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL------------------L 103 + + +I D+ + + + A+ K ++W++ LL L Sbjct: 62 YDMINGYILDICYELTAKQEYKKAYTKDILAWRVFRLLSSQNQEKNTHSHAGGNLIADGL 121 Query: 104 EREDFTL------------LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWET 151 +D +L L+ Y D SD +K +QLS K A+ F +Y+ YR +WL +WE Sbjct: 122 SSKDTSLCGYDNRDGWSSKLKEYYQD-SDLKK-YQLSVKIAETFSKYISYRSEWLQKWEK 179 Query: 152 GHLVE--GLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPS 209 + L + WQ +W+ LV+ + A ++ L+ + S Sbjct: 180 DEYINPSKLENDEDWQMLIWQNLVKDIAETPYKVQLEA------LQKLDKQNLEKLNISS 233 Query: 210 RVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSF 269 ++I G++ + P L+ + L K+I +H+L+ NPC YW D+ A L + Sbjct: 234 DIYIFGVNTISPKNLKFIFELAKYINVHILYINPCSEYWYDLHKSKISAWLDS------- 286 Query: 270 EDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV 329 +D E+ PLLA+ G+ G+++ L + E QEL+ F Sbjct: 287 DDYEI----------------------QPLLANLGQQGKEFFNQLLENEQQQELEVFEKF 324 Query: 330 TPDNLLH-----NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQR 384 ++L N Q+ ++ L+ R + ++ + ++ D SI+ + CHSP R Sbjct: 325 DKESLAFEKLADNNQTQLVSLQ-RNLLELDCQNHTKQK--------DLSISINSCHSPLR 375 Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 EV++LHD+LL M++ DP + PRDI+VM +I+ YSP+I +VF P D+ LP +I+DR Sbjct: 376 EVQILHDKLLDMIKADPNIKPRDILVMCPNIEDYSPYIDSVFSRYPTDKKLPCSIADRTL 435 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 S P+ +FI LL LP+S F +L L VP + +F IT+E L +R W+ ES I Sbjct: 436 LDSEPLAASFIELLQLPESNFEVNKILDYLAVPAIQQKFKITDEQLEAIRYWLKESCIHH 495 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQ---GEWQSVLPYDESSGLIAELV 561 +D +W +GL R++LG++ + + +P E S + Sbjct: 496 SNNDQTF-----------SWSWGLRRLMLGFSYSDSNYIIDDKLMTVPVIEGSEIAELGG 544 Query: 562 GHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 + L++ + + L + R L W +M + F + + I+ + Sbjct: 545 LYELLELLER--YSQNLLKPRSLANWQVYLLEMFDDVFDVTNDEQYIAKKIKDIIAKTVT 602 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMN 681 + L +R L +L + I+ FL G V C++ PMRS+PF+V+ +LG+N Sbjct: 603 TAKNILLDQEIDLYTIRYCLISQLSEPIINNHFLNGKVTFCSMTPMRSVPFRVIAMLGLN 662 Query: 682 DGVYPRQLAPLGFDLMSQ-KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS 740 +G +PRQ + + FDL+++ K+GDR++RDDDRYLFLEA++SA+ LYISYIGRS++ N Sbjct: 663 NGKFPRQESAISFDLIARLGRKKGDRTKRDDDRYLFLEAILSARDYLYISYIGRSVKTNV 722 Query: 741 ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ 800 E+ PS++++EL Y+ LN D + +K + LH F + Y R Sbjct: 723 EQQPSLILKELTSYLN----------LNYDWGKEDIKEY--PLHA---FSSKCYSDSYR- 766 Query: 801 SYAREWLPAASQAGKAHSEFVQ-PLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 S+ + WL + + LP+ + + L + + P++A+ L++ Sbjct: 767 SFDKAWLKLLQSEPRGFYDSASLSNCANLPKNLSISKLVKVFDDPIKAYANYALELYLED 826 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 + E+ D+EPF + L ++++ Q LL ++ D + + + +G LP +I + Sbjct: 827 DFEELEDSEPFDINSLDKHKLKQALLKTFEDEKDKDLTIKTAKLSGKLPESVLTDIEIKE 886 Query: 920 QCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQ 979 + + +Q+L D++ + ++ ++ ++ Q ++ PS L++ + + Sbjct: 887 EVENIQKLLDKMSLASYESKYFHQEILGYELEANCYIKNNQ---IMLSTPSSLNIGKKFE 943 Query: 980 LWLEHLVYCAS 990 L+L L+ S Sbjct: 944 LYLIALLVAYS 954 >UniRef50_A1KCB8 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease n=3 Tax=Betaproteobacteria RepID=A1KCB8_AZOSB Length = 1139 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 360/1197 (30%), Positives = 545/1197 (45%), Gaps = 155/1197 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M + SNR + L+A++ + ER PF ++V S+ + + +++ +++ G+ AN+ Sbjct: 1 MFSIVFSNRYECLQAMLLERLAAER-PGPFGKRHVVVPSSALRRDVELAVAEHEGVCANV 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL----LRHYLT 116 +F A ++W V+ E+P S F ++W++ LL D+ L HYL Sbjct: 60 EFSYLAQWLWTQIGHVV-EVPARSPFAPALLAWRVHALLDPAAPAGDWVAAHPRLAHYLA 118 Query: 117 DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA-------QAWQAPLW 169 +D R F+L+ + A +FD YL YR WL W G LGEA +AWQA LW Sbjct: 119 G-ADARMRFELAERIARVFDHYLTYRAHWLESWARGERAR-LGEATEAERADEAWQAALW 176 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + + + L + H A L+ R + ++ GLP V + G+ ALPP+YL L+ Sbjct: 177 RHIRD---GLALRQEHPAALFLRRVAGMDERALAAAGLPQTVHVFGLPALPPLYLAILRE 233 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L + +++ L NPCR +W +I DP L+ L RQ + Sbjct: 234 LARVVDVRLYALNPCREFWFEIVDPRRLSWLAARQ------------------------A 269 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDN----LLHNIQSDILEL 345 D + GN LLA+WG+ + +I LL + E +A + P LHN D+ EL Sbjct: 270 DMFHETGNRLLAAWGQQTQAHIGLLFEGEREVVEEALFEPHPGRHLLARLHNAILDMEEL 329 Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL----AMLEEDP 401 E +VA L D SI HVCHS RE+EVLHDRLL A + Sbjct: 330 EPGSVA---------------LAANDRSIELHVCHSRTRELEVLHDRLLDLMKAAAKRGE 374 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 L P +I+V+ D+D+ +P I+AVFG+APA R +P+ I+ Q +PV A LL+L Sbjct: 375 PLRPDEIVVLTPDLDATAPLIEAVFGTAPAARRIPWRITGLGGTQENPVAAALDRLLALV 434 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE---LELPA 518 R + V LL PV+AARF + E L + W+ +GIRWG+D ++ + + A Sbjct: 435 AGRLPASAVFDLLQQPVVAARFGLGEGDLETIHDWMRAAGIRWGLDAEHAAAAGGVPVQA 494 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR--- 575 G HT GL R+ LG+A A + P+ +G I + L +WR Sbjct: 495 CGGHTLDAGLDRLFLGWAAGDAA----TAAPF---AGFIGAGAAEGNAALALGRLWRYVD 547 Query: 576 --RGLAQERPLEEWLPVCRDMLNAFF--LPDAETEAAMTLIEQQWQAIIA-------EGL 624 RGL + + R L++ L E E A L E + +AI+A Sbjct: 548 TLRGLRADLQRPQQAAGWRRALDSALTRLVGDEPEWAEALREVR-EAIVALTQAMAAAAT 606 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGV 684 A+PL+++ L +LD + G V L +R +P++VVC++G++ G+ Sbjct: 607 DDGDAPAIPLAVVHPALIAQLD-DPARGGVPGGTVTFSALSSLRGLPYRVVCVVGLDQGL 665 Query: 685 YPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 +P P FDLM+ +P+RGDR RR DDR LFL+ L+SA++ L++S++GRS++D S P Sbjct: 666 FPGSDRPAEFDLMAARPERGDRQRRHDDRNLFLDVLLSAREVLHLSHVGRSVRDGSALPP 725 Query: 745 SVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP-GERQ--- 800 SVLV EL D + + D D + AR + LT H F + + P GER Sbjct: 726 SVLVDELFDVLAAA--CAADPGKPDDLAAARRR--LTVEHPLQAFSAEYFLPQGERDPRL 781 Query: 801 -SYAREW-------------------LPAASQAGKAHSE-------FVQPLPFTLPE--T 831 SY E+ L A ++ G + F PLP PE Sbjct: 782 VSYHEEYAAALAARLGAPLRDADDDALVALAEEGDEVAVDGARVPFFDAPLPPPGPEWRE 841 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ 891 V L L RF+ +P R + RL + ++E+ D EP + + L R + ++LL AL+ Sbjct: 842 VGLPQLIRFFRNPSRYLLRDRLGLALPEGEAELEDVEPMVPDFLGRQALAERLLPALLGA 901 Query: 892 D--DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ-------SME 942 D E L RA G+ P GA GE + ++ A V A P + ++ Sbjct: 902 TVPDEEALLALARAGGEYPAGALGEGALRRELAQLTVFAAGVRA-ELPARPLPPHVPTLA 960 Query: 943 IDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES--RLFL 1000 DL + ++P GLLR R + WL HLV CA+ + L Sbjct: 961 FDLDGEPWTLGAAFGDLRPQGLLRQRYDDCRPVDYLAAWLAHLVLCAAPAPDVACETTLL 1020 Query: 1001 RKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDD 1060 +DG RF + A L+ + YR G+ PL P++ AW Y ++M Sbjct: 1021 ARDGRCRFVAVPPATAHALLADCLRLYRAGLLRPLHFFPKA--AW---AYAVNGESM--- 1072 Query: 1061 DSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 KA ++ GN E D Y+ R + + + R L PL Sbjct: 1073 ----GKAYARW---QGGNRPAFAESADPAYRLALRGVADPLADDFAALASRVLGPLL 1122 >UniRef50_Q3BM39 Exodeoxyribonuclease V, gamma chain n=19 Tax=Xanthomonadaceae RepID=Q3BM39_XANC5 Length = 1184 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 325/1079 (30%), Positives = 493/1079 (45%), Gaps = 143/1079 (13%) Query: 30 FEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQ 89 +PE++L+ M +WLQ TL+ + G+AAN++F P F+ R L + + Sbjct: 85 LQPEVVLIPQVAMRRWLQSTLAAEHGVAANLEFLTPGEFVARALERNLGA--ADDDLDMA 142 Query: 90 SMSWKLMTLLPQLLERED-FTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQ 148 + W+L L L + L YL+D D K + L+ + A +F++Y +R DWL + Sbjct: 143 TTQWRLYAALQSDLGSDAALAPLAGYLSD-GDALKPWALAGELASVFEKYQAWRRDWLLR 201 Query: 149 WETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATT-CPPGL 207 WE G + QA LW+++ R +RA ++++ A P GL Sbjct: 202 WEAG------ADPDDPQARLWRSIATG-------RQYRARRIGQYLDRHARADGPLPQGL 248 Query: 208 PSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRH 267 P RVF I + P L+ L + +H P + YWGD++ L R+R Sbjct: 249 PPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYWGDLQ------TLWQRRR-- 300 Query: 268 SFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ---ELD 324 + A QLF EQ NPLL +WG GRD++ L+ D E E+ Sbjct: 301 ------------EDGAVQLF---AEQVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIA 345 Query: 325 AFVDVTP------------DNLLHNIQSDILELENRA----VAGVNIEEFSRSDNKRPLD 368 A+ D D+LL +QSD+ A + VN+ Sbjct: 346 AYADPLESGRRTLADGGLGDSLLRRMQSDLFHRRAPAAEAVLPAVNLH------------ 393 Query: 369 PLDSSITFHVCHSPQREVEVLHDRLLAMLEE---DPTLTPRDIIVMVADIDSYSPFIQAV 425 D S+ H CH+ RE++VLHD+L A+L++ DP L PR+I V+ +ID Y P++ AV Sbjct: 394 --DPSLQVHACHTRLRELQVLHDQLRALLDDARFDPPLQPREIAVLSPNIDPYVPYLDAV 451 Query: 426 FGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDI 485 FGS D LPYA++D S + E F++LL LP +RF ++L LL +A + Sbjct: 452 FGSHGNDDALPYALADASPLASESLAEVFLTLLGLPIARFGLHEILDLLASAPIAEAAGL 511 Query: 486 TEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQ 545 E GL LR W++ +G RWG+D + R+ + P +TWRF L R+LLG+A A + Sbjct: 512 DEAGLERLRSWLHAAGARWGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHA-SGADEDID 570 Query: 546 SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAET 605 V P+ + G + L LL L + LA+ EW +L A +P T Sbjct: 571 GVAPWPQLEGSALAALDTLLRLLRVLERHQAALAEAMTPVEWRERLLGLLEA-LIPTMPT 629 Query: 606 EAAMTLIEQQWQAIIAE----GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNI 661 + +A+I + + A+Y VP ++R A L + L G ++ Sbjct: 630 APRAQRALDRLRALIVQFARDAMRAEYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISF 689 Query: 662 CTLMPMRSIPFKVVCLLGMNDGVYPRQ-----LAPLGFDLMSQKPKRGDRSRRDDDRYLF 716 ++PMR +PF+V+CLLGMNDG +PR+ L L +L +++ + GDRS R+DDR+LF Sbjct: 690 GRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLF 749 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 L+ SAQ Y+SY+G +D S R PSVLV EL+ Q H A N Sbjct: 750 LQLFASAQDVFYLSYLGADARDGSVREPSVLVSELLASAAQYH-----AASNA------- 797 Query: 777 KAHLTCLHTRMPFDPQNYQPG-------------ERQSYAREWLPAASQ----------- 812 L L R P P R SY R+W PA Sbjct: 798 ---LDTLVVRHPLQPFAAAAFGALGDESDAGADPRRFSYRRQWRPAVDSLVGQRQPLAPW 854 Query: 813 -AGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI 871 AG +E + LP ++ ++ L+R P F + RL + E D EP + Sbjct: 855 VAGALPAEGI-----ALPASMSIDALRRLLTDPAGQFLRHRLGMRLPDPAGEDADLEPLL 909 Query: 872 --LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 GL +Y + QQ+ +A + D E L+ R RA LP G G + + +++ AD Sbjct: 910 APTRGLDQYGLQQQIFDAALA-GDTEHLYARLRARALLPSGPLGRRQLDERVAQLRPYAD 968 Query: 930 RVIACR--QPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVY 987 R P QS + + + +++ G +P G+ R + LS ++ LE L+ Sbjct: 969 AFRQWRGESPAQSRRLQVQIDEIELHGRVPGWYASGVGRVQVGALSGRSAIRHGLEWLLL 1028 Query: 988 CASGGNGE-SRLFLRKDGEWRFP----PLAAEQALHYLSQLIEGYREGMSAPLLVLPES 1041 A+G + R F DG P PL+ QA L++L++ YR+G+ PL P S Sbjct: 1029 RAAGEHAPYVRFFEHDDGLGPHPIDAQPLSQTQARTALAELLQLYRQGLQMPLAFAPYS 1087 >UniRef50_D2U882 Probable exodeoxyribonuclease v, gamma chain protein n=1 Tax=Xanthomonas albilineans RepID=D2U882_XANAL Length = 1187 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 343/1155 (29%), Positives = 521/1155 (45%), Gaps = 147/1155 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPF-EPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 R+Y SN LD L AL+ + R + P PE++L+ M +WLQ TL+ G+AAN+ Sbjct: 60 FRLYPSNALDTLAALLAEELRRPLPEQPLLAPEVVLIPQVAMRRWLQSTLAATHGVAANL 119 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL--LRHYLTDD 118 F P F+ R L + + S+ W+L L L D TL L YL DD Sbjct: 120 QFLTPGEFVAHALERNLGA--ADDDLDMTSLHWRLYAALRSDLG-ADPTLAPLAAYLADD 176 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQ 178 D K + L+ + ++F++Y +R DWL +WE G + QA LW+ + Sbjct: 177 -DPLKPWTLAGELGNVFEKYQAWRRDWLLRWEAG------ADPDDVQARLWR-------R 222 Query: 179 LGQPRWHRANLYQRFIETLESA-TTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 + R +RA +++ P GLP R+F + + P L+ L + +H Sbjct: 223 IASGRAYRARRIGHYLDRYARPDGPLPQGLPPRLFAFAVLNISPDVLRVLATQARVGTLH 282 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 P + YWGD++ L R+R AG + EQ N Sbjct: 283 FYLPTPTQGYWGDLQ------TLWQRRR-----------------AGTAVDLFAEQIQEN 319 Query: 298 PLLASWGKLGRDYIYLLSDLESSQ---ELDAFVDVTP------------DNLLHNIQSDI 342 PLL +WG GRD++ L+ D E E+ + D D+LL +QSD+ Sbjct: 320 PLLQAWGAAGRDFMALIGDYEVVHPLAEIAVYADPLESGQRPLADGGLGDSLLRRMQSDL 379 Query: 343 LELENRAVAGVNIEEFSRSDNKRP-LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE-- 399 + RS P +D D S+ H CH+ RE++VLHD+L A+L++ Sbjct: 380 FQ-----------RRAPRSPAALPTVDKHDPSLQVHACHTRLRELQVLHDQLRALLDDPR 428 Query: 400 -DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458 DP L PR+I V+ +ID Y P++ AVFGS D LPYA++D S P+ E F++LL Sbjct: 429 LDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASEPLAEVFLALL 488 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 LP +RF ++L L+ +A + GL LR W++ +G RWG+D + R+ + PA Sbjct: 489 GLPIARFGLHEILDLIASAPIAEAAGLDTAGLDRLRGWLHAAGARWGLDAAHRRQHQAPA 548 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 +TWRF L R+LLG+A A+ + V P+ + G + L LL L+ + L Sbjct: 549 DDAYTWRFALDRLLLGHA-SGAEDDIDGVAPWPQLEGSALAALDTLLRLLRVLDRHQAAL 607 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAET--------EAAMTLIEQQWQAIIAEGLGAQYGD 630 A+ P +W C L LP + E TLI+Q + A+Y Sbjct: 608 AEPMPPAQWR-ECLLALLDALLPQTPSAPRAQRALERLRTLIDQ----FARDAARAEYTA 662 Query: 631 AVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ-- 688 AVP ++R L + L G ++ ++PMR +PF+ +CLLGMNDG +PR+ Sbjct: 663 AVPAEVVRAHFTAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLLGMNDGDFPRRDP 722 Query: 689 ---LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 L L +L + + + GDRS R+DDR+LFL+ SAQ Y+SY+G +D S R PS Sbjct: 723 AAGLNRLTAELGTARRRHGDRSTREDDRFLFLQLFASAQDVFYLSYLGADARDGSVREPS 782 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG-------- 797 LV EL+ Q H P A T L R P P Sbjct: 783 PLVGELLACAAQYHAEP---------------AAATTLVVRHPLQPFAAAAFGAIGAEAA 827 Query: 798 --ERQSYAREWLPAA-SQAGKAHSEFVQPLPFTLPETVP------------LETLQRFWA 842 R SY R+W PA S G+ QPLP +PET+P ++ L+RF Sbjct: 828 DPRRFSYRRQWRPAVDSLIGQR-----QPLPPWIPETLPAMADDALPTSLSIDELRRFLL 882 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFI--LEGLSRYQINQQLLNALVEQDDAERLFRR 900 P F + RL + D EP + GL +Y + QQ+ AL+ +++ + L+ R Sbjct: 883 DPAEQFLRQRLGLRLPDPAQADSDLEPLVAPTRGLDKYGLQQQVFEALL-REETDGLYER 941 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRV---IACRQPGQSMEIDLACNGVQITGWLP 957 RA LP G G + ++++ AD + + + +G ++ G L Sbjct: 942 LRARALLPSGPLGRHQLDQHLRQLRPYADAFGHWCGATPAPPAARLHVHIDGTELHGRLS 1001 Query: 958 QVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASG-GNGESRLFLRKDGEWRFP----PLA 1012 G+ R + LS ++ LE L+ A+G G R F +DG P L+ Sbjct: 1002 DWYAAGVGRVKIGALSGRSAIRHGLEWLLLRAAGEGAPFVRFFEHEDGLGPHPLDPERLS 1061 Query: 1013 AEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFL 1072 + QA L+ L+ YR+G PL +P S A+ + D + + + +A + Sbjct: 1062 STQAQQALTDLLRLYRQGQQTPLAFVPYSSWAYYQAARGGDLDKAIKNAAAQWQAGFSWR 1121 Query: 1073 QAYEGNMMVRGEGDD 1087 +A + + G D Sbjct: 1122 EADRPQLRLVCRGRD 1136 >UniRef50_Q6ANK2 Related to exodeoxyribonuclease V, gamma chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK2_DESPS Length = 1056 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 318/1012 (31%), Positives = 484/1012 (47%), Gaps = 103/1012 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML ++ SN + L ++ I++RE + F E+ L+QS G+ + + L+ +F N Sbjct: 1 MLHLHISNHTEKLLEILAAIIKREGRANLFAREIFLIQSPGVERTVCQYLADEFKSWCNF 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL-LRHYLTDDS 119 DF LPA + + + ++ + F Q+ W+L LL + ED L L+ Y++ + Sbjct: 61 DFLLPAGLLRKIASSLYVDLETD-LFASQTTVWRLEALLRDI--DEDIYLPLKKYVSGEV 117 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 + K +QL+ + A LFDQY + RP LA+W G V + + WQ LW+ LVE + Sbjct: 118 AELKRYQLAGQIAQLFDQYQLMRPSMLARWRLGQRVTE-EDCEIWQMHLWQRLVE---EF 173 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 R H+ + + IETLE C LP R+F+ G+ + P++L+ LQAL E+HL Sbjct: 174 PAAR-HQGEILENIIETLEK-EECQRRLPRRIFVFGLHTMAPLFLKFLQALSSRTEVHLF 231 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 +PCR YWG++ DR L L ++ L S E++ L Sbjct: 232 LLSPCREYWGEVGRGG---------------DRLLSLEGIRDSGVDL--SSYEEEEPQQL 274 Query: 300 LASWGKLGRDYIYLLS-------DLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAG 352 LAS G+ GRD+ +L D Q L A +P +LLH +Q DILE AV Sbjct: 275 LASLGRQGRDFQQMLVASAGYSIDSALYQGLGA---GSPPSLLHVLQGDILERGRLAVTA 331 Query: 353 VNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV 412 D S+ CHSP RE+ VL D +L +L +D +L RDI+VM Sbjct: 332 AR----------------DDSLRIVSCHSPLRELAVLKDHILDLLYKDASLQLRDIVVMA 375 Query: 413 ADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 DI Y+P I A+F + Y+I+DR Q + V+ F+ L+L RF +VL Sbjct: 376 PDIQEYAPLIPALFAD------IQYSIADRATGQRNTVMAVFLDYLNLFSGRFGWSEVLD 429 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 LL + ++F + E L++WV ESGIRWG+ + +EL LP +TW GL R+L Sbjct: 430 LLRSEHIYSQFSLGEGDFDLLQKWVTESGIRWGLSAEQRQELGLPPLELNTWLAGLQRLL 489 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LG+AM SA + VL Y + G A+ +G L L L + R L EW + + Sbjct: 490 LGFAM-SADTMVEGVLAYSDIEGNSAQALGGLCEFLQVLQGGQELYTTPRLLHEWAELLQ 548 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ--------YGDAVPLSLLRDELAQR 644 F E +A Q+ Q I+A GLG Y + ++ L Q Sbjct: 549 GDAERLF--GGEENSA----HQELQQILA-GLGRGREYQGVLLYSQPIAFQVVMAWLQQA 601 Query: 645 LDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG 704 Q S FL G + C+++PMRSIPF+V+CLLG+N+G +P+Q FDL++ KP+ G Sbjct: 602 SAQVGSSAGFLRGQLTFCSMLPMRSIPFRVICLLGLNEGKFPKQDKQATFDLLASKPELG 661 Query: 705 DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD 764 DRS R DDRY FLEALIS + LY+SY+GRSI++N E PSV++ EL+D + Sbjct: 662 DRSPRIDDRYQFLEALISVRDSLYLSYVGRSIKNNGEIPPSVVLCELLDLLECKF----- 716 Query: 765 EALNCDESEARVKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAASQAGKAHSEFVQP 823 A+ ++ H PF + ++ + SY L A + +P Sbjct: 717 -AIKPEDIVVEQPLH--------PFSSKYFEGRADLFSYNENCLTLAQKIYGGGGGEERP 767 Query: 824 L---PFTLP-ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQ 879 P E + L + F+ +P R F L++ DTE F GL RY Sbjct: 768 WWSGNLGRPQENIYLADMVSFYKNPQRWFVSRSLEIRLGASSDLPDDTETFSASGLDRYL 827 Query: 880 INQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ--P 937 + Q L+ L+ + ++ G P G G + ++ E+ + + + RQ P Sbjct: 828 LEQGLVEDLLAGREVADIYHGLAIEGRWPQGTPGSLLFKKLLTELDEFTNSI---RQIDP 884 Query: 938 G---QSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV 986 G Q++ ID ++ G + ++ +G+ R + ++ WL HLV Sbjct: 885 GPIIQTLPIDQRIGPYRLLGKVA-LRQNGIFLHRYANRKGKDLLEAWLYHLV 935 >UniRef50_C1ACJ2 Exodeoxyribonuclease V gamma subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ2_GEMAT Length = 1101 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 317/1120 (28%), Positives = 521/1120 (46%), Gaps = 136/1120 (12%) Query: 29 PFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVL----------- 77 PF+ ++++VQS GM +W++ L+++ G AA++ P PA+F + + Sbjct: 32 PFDDDIVVVQSLGMERWVRQQLARRRGCAASLQLPFPAAFCRKLAESLAGIGGPGNETDA 91 Query: 78 PEIPKESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLF 135 P + K F +++++W+L LL +L + LR +L + +D K + L+ + + F Sbjct: 92 PTLDKR--FEEEALTWRLFALLSDEDMLADAVYAPLRAFL-EQADPAKRYGLARRVSARF 148 Query: 136 DQYLVYRPDWLAQWETG--HLVEGLGEAQA------WQAPLWKALVEYTHQLGQPRWHRA 187 D+Y +YRPD L WE G VEG + A WQ LW+ +++ G+ H A Sbjct: 149 DEYRLYRPDMLLAWEAGGHASVEGPFDTAAENPHAAWQCALWQQVLQ-----GERPMHFA 203 Query: 188 NLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYY 247 + IE LE A P GLP R+ + GIS LPP++++ L+A+ + + P Sbjct: 204 RWFLHTIERLEQAAIRPVGLPDRLSVFGISTLPPLFVRLLKAVSRFAAVRFFVLVPA--- 260 Query: 248 WGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLG 307 DP + + NPL A +G Sbjct: 261 -----DPQLVGR-----------------------------------SPNPLTAQFGHAS 280 Query: 308 RDYIYLLSDLE--SSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKR 365 ++ + LL E S+ + A + D++LH++Q RA+ G + + Sbjct: 281 QELLTLLGANEPGGSRHVQAAMPAE-DSVLHHLQ--------RALRGSEL-----TPTAC 326 Query: 366 PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 + P D S++ H+CHSP RE+EVL D+LL +P L P D++VMV D++ Y+P + V Sbjct: 327 LVSPTDRSVSVHICHSPLREMEVLRDQLLDAFAVNPALRPHDVLVMVPDVELYAPLAEVV 386 Query: 426 FGSAPADRY--LPYAISDRR-ARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR 482 FG A ++ +P+ ++DR AR+S P+ + L + SR DVL LL VP + R Sbjct: 387 FGGAMSESRPRIPFRVADRALARESAPLQALELLLQLV-SSRLGVSDVLHLLSVPSVRRR 445 Query: 483 FDITEEGLRYLRQWVNESGIRWGID-DDNVRELELPATGQHTWRFGLTRMLLGYAMESAQ 541 +T + L WV ++GIRWG D DD V +P+ +++WR GL R++ GYAM Sbjct: 446 VGVTPAQVEQLTGWVQQAGIRWGWDADDRVSRFGVPSFVENSWRLGLDRLMAGYAMGPVD 505 Query: 542 GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP 601 + +P AEL+G + L L + RPL W V ++ +P Sbjct: 506 VLVEGHVPVAGDLVGDAELLGVFVRWVDDLERHLMRLREARPLSTWSTVLAEVFAWAVVP 565 Query: 602 DAETE-AAMTLIEQQWQAIIAEGLGA-------QYGDA----VPLSLLRDELAQRLDQER 649 + E A M I + QA+ E GA + D V ++RD + LD + Sbjct: 566 EGSAEQATMAQIAEAMQAL-REPSGAPRQRRLREAHDVEDPEVAFEVVRDWILAALDSDD 624 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR 709 + FL G + IC + PMR+IP +V+ +LG++D YPR+ FDL+ + GDR R Sbjct: 625 HATGFLTGGLTICAMKPMRAIPHRVIAMLGLDDRSYPRRERRPAFDLIGSARRVGDRDPR 684 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 DDR L L+ L+ A+ +L++SY+GRS +N+E PS++V EL+ Y+ + + Sbjct: 685 TDDRQLVLDTLLCAEDRLHLSYVGRSETNNAEIAPSIVVAELLQYLQRMVH-------TV 737 Query: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 D++ + L H PF + P + + + + + +E + PF Sbjct: 738 DKAPHPL---LRVEHRLQPFSTAYFVPTATDTALFSFDDVLAASVRDVTERRKAPPFVAR 794 Query: 830 ETVPLET--------LQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQIN 881 PL T L W++P + + L ++ R + D EP +++ L R ++ Sbjct: 795 AVTPLHTEGVIALDDLMLAWSNPSQLHAERTLHLSLRDHRDALDDVEPTVVDALLRTRLQ 854 Query: 882 QQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--Q 939 Q+LLN ++ R A+G+LP G G + + Q++ L RV QP + Sbjct: 855 QRLLNEVLHGAGERGATARLSASGELPPGPLGAAWQQRLAQQVDPLLQRV---GQPRFLE 911 Query: 940 SMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLF 999 + +DL +G Q+ G L + R R + L ++ W+ HL A G G +R+ Sbjct: 912 PLTVDLRGHGWQLVGRLDYQHAEEQWRVRAATLKPRDVVRGWIAHLARQAMGVGGTTRV- 970 Query: 1000 LRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLD 1059 + D E RF P A A+ L L++GY+ ++ P+ + A+ K A + Sbjct: 971 MALDQELRFAPQA--DAMVLLEALVQGYQRMLAEPMPYFLAAAVAYRKAIATASS-GRGA 1027 Query: 1060 DDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTP 1099 L+ AR KF G G+ DD + LWR+ P Sbjct: 1028 AKPPLEAARAKF---APGGDYGEGDLDDPYVALLWRERDP 1064 >UniRef50_C1SHH5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH5_9BACT Length = 1038 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 280/1044 (26%), Positives = 493/1044 (47%), Gaps = 79/1044 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y NRL+ L M+ + P I +Q+ GM +W+ + L++ GI+AN+ Sbjct: 1 MLKIYTGNRLERLLEKMDMNICSAG-SGPLTKVPICIQTPGMQRWIGIKLAELTGISANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DF P + + + E K K + WK+ + L L + + +R+YL D + Sbjct: 60 DFIFPGALMKRLAGVGAGE--KAPWPEKNELVWKVYSKLNSLPSEQFYEHIRNYLEGDIN 117 Query: 121 KRKLFQLSSKAADLFDQYLVYRP----DWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 + ++L+ + AD+FDQY VYRP DWL+ VE + WQ L++++ + Sbjct: 118 GIRAYRLAGRIADVFDQYQVYRPQMVLDWLSVKPKNPPVE---DNDIWQMELFRSI--FP 172 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 H G + ++ +FI+ P L + + I GIS LP +++ L+A ++ +I Sbjct: 173 HGSG----CKTTIFDKFIKNCTKGANNCPALKTPIHIFGISVLPAFFIEMLKAASQYTDI 228 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 + +P R YWGD +K + +RR ++ +A +L+ + + Sbjct: 229 YFYLLSPTRQYWGD-------SKTIREKRRLEKITQK--------SAEELYIEEKHE--- 270 Query: 297 NPLLASWGKLGRDYI-YLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 LL + G +GRD+ YL +S + + D+ +++L +Q++IL+LE Sbjct: 271 --LLDNLGVIGRDFFDYLFGSDDSFLTEEEYFDIAKNSVLQTVQAEILDLE--------- 319 Query: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 N++P D+SI + CH+P RE+E L+D+LL + D TL P DI+VM DI Sbjct: 320 -----YGNEKP--SHDNSIIINNCHNPLREMETLYDQLLELFNNDQTLRPSDILVMTTDI 372 Query: 416 DSYSPFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 + Y+P+I+AVF + ++R +PY+I+D +Q++ F+ LLS F DV+ +L Sbjct: 373 EKYAPYIKAVFDNPYSERERIPYSIADVSEKQTNRPAGIFLELLSTLRGDFSLADVMRIL 432 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 ++A +F I L L + +G W +++R+ L TW L R+ LG Sbjct: 433 SYDLIADKFSIKRSDLSTLSTMLQNAGAMWSYGREHLRKEGLTIDDTFTWERALRRVALG 492 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 A E + G S ++ +G L + + + E+ + EW + + + Sbjct: 493 LA-EGSSGSIYSEAAVKNVPFSLSVQIGGLMRFADLSSKYAEQMDSEKTIPEWCALMQAL 551 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 + + + + + + I E + +AVP + + + L + L + R ++ F Sbjct: 552 ADDYIKETFDNADDILHLSKCIADINTEAENGDFTEAVPAAPVLERLTESLSETRGAKGF 611 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 ++G V C ++PMRSIPF+V+C+ G+++ +PRQ L FDLM++ PK GDR+ RD DRY Sbjct: 612 ISGRVTFCAMLPMRSIPFRVICVAGLDENTFPRQKVSLEFDLMAKSPKPGDRNNRDSDRY 671 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLE LISAQ L +SY G+S +DN+E PS L+ EL + +L G ++ Sbjct: 672 LFLETLISAQDTLILSYTGQSERDNAELLPSTLITEL------NTHLKG--RFGIEDITL 723 Query: 775 RVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPL 834 + K H +R F + Y ++ + G S P+ +P+ V L Sbjct: 724 KQKLH---SFSRDYFSNEKLFTYSSDKYNTSRAFSSEKTGHRFSTL--PIEVQMPDEVSL 778 Query: 835 ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDA 894 + F+ P F + L++ + D +P+ E + L +Y+I L +E D Sbjct: 779 ADFENFFISPPDYFLRKVLEIRPKLRDESLPENEIMCPDPLLQYKIIDNALRERLEGKDP 838 Query: 895 ERLFRRFRAAGDLPYGAFGEI-FWETQCQEMQQLADRVIACRQPG--QSMEIDLACNGVQ 951 + LP G + ET M+ +R + G + +ID A +G+ Sbjct: 839 DNALEYLYKTAQLPPENLGRLSITETLNTSME--LNRTVTETLGGTPEEQKIDSAIDGLH 896 Query: 952 ITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPL 1011 I+G + V + + +P+ + ++ W+ HL+ C + PP Sbjct: 897 ISGTIFGVSGNRYVYAKPASIKPKDIIRGWIRHLLLCQKA--SITTTLCGGGNTVEIPPA 954 Query: 1012 AAEQALHYLSQLIEGYREGMSAPL 1035 + +L+ L+E ++EG +PL Sbjct: 955 DS----GHLNNLVEIFKEGHKSPL 974 >UniRef50_A1V2S0 Exodeoxyribonuclease V, gamma subunit n=90 Tax=cellular organisms RepID=A1V2S0_BURMS Length = 1354 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 337/1162 (29%), Positives = 525/1162 (45%), Gaps = 128/1162 (11%) Query: 1 MLRVYHSNRLDVLEALMEFIVE-RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML +++SNR + L + + P+ + ++V S + + L++ L+++ G+ AN Sbjct: 241 MLHLFYSNRHETLADALLDDLAFASDGAGPWAAQQVIVPSAALRRRLELDLAKRHGVCAN 300 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 + F A ++W VL +P S F + W+ LL R + Sbjct: 301 VRFSYLAQWLWAQIGEVL-TVPAHSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAA 359 Query: 120 DKRKL-FQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL-------GEA----QAWQAP 167 + +L+ + A +FD YL YRP+WLAQW+ G + L GEA +AWQA Sbjct: 360 ADAPMRHELAHRIATVFDHYLTYRPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAA 419 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW+AL+ G P HR R + + P V + + +PP+++ L Sbjct: 420 LWRALLAELSDSGMPPAHRFLREARAFDP-DVIARARAKWPDAVSVFALPTMPPLHIALL 478 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 + L + I++ + NPCR +W DI +T R S + + + Sbjct: 479 RELSRWIDVRIYALNPCREFWFDI---------VTAARAESLDAADRLDY---------- 519 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDL-ESSQELDA--FVDVTPDNLLHNIQSDILE 344 Q+VG+PLLA WG+ + +++L +L ES+ DA + D L +Q+ IL+ Sbjct: 520 -----QEVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYADNPAPTWLARVQNAILD 574 Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 L+ A G P + + HVCHS R++EVLHDRLLA + DP+L Sbjct: 575 LQPEAALGEP--------------PAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLA 620 Query: 405 PRDIIVMVADIDSYSPFIQAVFGS-APADRY-LPYAISDRRARQSHPVLEAFISLLSLPD 462 P D++V + D+ + P I AVFG+ A AD +PY I+ Q++PV + L+LP+ Sbjct: 621 PSDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPE 680 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVR--ELELPATG 520 + +++ L +AAR+ I L ++ W+ SG R G+ D +PA Sbjct: 681 RDVGAPELVEWLRADAVAARYGIDATALETVQAWLAASGARRGLAPDAAEPPNPAVPAP- 739 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +HT+ LTR+ LGYAM + LP + G AEL+G LA L+ + R +A+ Sbjct: 740 RHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTDDLDGFARRIAR 799 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 + + W V D L FF A++ + A++A G A+P +++R Sbjct: 800 DLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAGAALPAAVVRAG 859 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 LA LD G V +L +R +P+++VCL+GM+DGV P FDLM+ Sbjct: 860 LAAALDDPARGGVPWGG-VTFSSLTSLRGLPYRIVCLIGMDDGVLPSLARADEFDLMAVF 918 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 K GDR RRDD+R LFL+ L++A+++L I+Y GRSI+DN+ P+ LV EL+D++ + Sbjct: 919 AKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDELLDHLAAASA 978 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG--------ERQSYAREWLPAASQ 812 P D + + H PF + + PG R + AR L A Sbjct: 979 GPDAPPDAVDAA----RRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLAR--LLAEGA 1032 Query: 813 AGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFIL 872 +A F PLP + V +RFW HP R+ + RL + +E+ DTEPF L Sbjct: 1033 RAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVDTEPFEL 1092 Query: 873 EGLSRYQINQQLLNALVEQDDA---ERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 + + +++L L+E DA E R A+ ++P GA G + + + QLA Sbjct: 1093 DYAGSDALAERVLPLLIETADAAAFEHALRVADASPEVPGGATGAVRRDHALDALAQLAG 1152 Query: 930 RV------IACR-------QPGQSMEIDLACNG--------------VQITGWLPQVQPD 962 V A R P S D G +++ G L ++ Sbjct: 1153 NVRRALADGATRVPFAFDVAPAWSAASDARWFGEHDAALAAAATREPLRLHGALARLTAA 1212 Query: 963 GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGE-WRFPPLAAEQALHYLS 1021 G + +R + + WL HLVYCA G R G+ + F P+AA L L+ Sbjct: 1213 GQVIYRYARPGARDYLAAWLAHLVYCAIDPGGPRRTLWFGSGDTFEFAPVAAP--LEQLA 1270 Query: 1022 QLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMV 1081 L +R G PL P S AW A++ + + KA ++ N V Sbjct: 1271 PLAALFRAGRRMPLAFFPRS--AW----------ALVSESES--KAAGVWI-----NDRV 1311 Query: 1082 RGEGDDIWYQRLWRQLTPETME 1103 GE DD WR P E Sbjct: 1312 AGEADDASLALAWRGANPSLDE 1333 >UniRef50_C3X2X1 Exodeoxyribonuclease V n=2 Tax=Oxalobacter formigenes RepID=C3X2X1_OXAFO Length = 1129 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 318/1109 (28%), Positives = 512/1109 (46%), Gaps = 126/1109 (11%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SNR DVL + E + +R F E ++V S + + L + ++ G+ A Sbjct: 12 MLNLNLSNRFDVLLQTFCENLAKRPAT--VFTAEQVIVPSAAIKRKLMLAIADTAGVCAG 69 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 ++F A ++W + + E+P+ S F+ +SW+++ LL + + + YL+ Sbjct: 70 VEFSFLAQWLWRQIGKFV-EVPETSPFSSSVLSWRILRLLEEPGFAAPYPRIAGYLSR-C 127 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL----------GEAQAWQAPLW 169 D+ F L+ + A LF+QY++ RP+WLA W G VE + GE QAWQA LW Sbjct: 128 DEIMRFDLACRIASLFEQYVLSRPEWLAAWSKGETVEIVRKGHPKQAVAGEDQAWQAALW 187 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATT-CPPGLPSRVFICGISALPPVYLQALQ 228 + + E T L + +RF++ LE+ LP RV + ++ P ++ L Sbjct: 188 RKIAEETGTLEE------EPAERFLKMLETGGEEMAARLPERVHLFLEPSVAPYHVGILN 241 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 LG+ ++I L NPCR YW +I D LA L RQ+ Sbjct: 242 RLGRWMDIELYVVNPCREYWFEIVDSRRLAWLSKRQK----------------------- 278 Query: 289 SDGEQDVGNPLLASWGKLGRDYI-YLLSDLES-SQELDAFVDVT----PDNLLHNIQSDI 342 D + GN LLASWGK R + LL+ LE +E D F+ P+ LL +Q I Sbjct: 279 -DLYHETGNRLLASWGKESRASLESLLARLEPVGRENDGFISCAERARPETLLSRLQDAI 337 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 L+L +E S S R D S+ H+ HS RE+E+LHD+LL Sbjct: 338 LDL-------TELEAGSLSHLGR-----DGSLEIHLAHSRTREIEILHDQLLRRFASGDP 385 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 P DI+V+ D+D +P I+AVF + +PY I+ R+ + +PV A + LL+L Sbjct: 386 PGPGDILVVSPDLDEIAPMIEAVFSHNRSAPQIPYVITGRKDSRINPVSRALLDLLALAS 445 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 SRF + V+ +L +P + A F + L +R W+ ++GI W ID + RE LP H Sbjct: 446 SRFTAAGVIDVLMLPEIGATFGFGGD-LDKIRGWLGDAGICWAIDGAHKREFGLPEEDGH 504 Query: 523 TWRFGLTRMLLGYAM-ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 ++ GL R+ L YA+ + + + LP ++G A +G L + + +R L+ Sbjct: 505 SFHDGLHRLFLAYALPDGRRVPFADRLPAGHAAGTQAAGLGQLWRFVEAVRQLKRDLSHP 564 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 + W +L+AF ET A + + + Q G+A + Sbjct: 565 KTAAGWWQTWHGILDAFVTVTPETLEADREVRMRIAGL--RDAMTQAGEAFETGFIIARH 622 Query: 642 AQRLDQERISQRFLAGPVNICTLMPM---RSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS 698 A E Q + P + T PM R++PF V ++G++DGVYP ++ FDL+ Sbjct: 623 ALERALEGAGQGSV--PAGVVTFAPMDSLRNLPFGHVYVIGLDDGVYPAEVRQQEFDLIR 680 Query: 699 QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 P++GD + D+ +FL+ ++SA + LY+S GR+I+DNS + PS+L+ EL++ + + Sbjct: 681 LAPRKGDCLPHETDKNVFLDLVLSAGKSLYLSCTGRNIRDNSPKPPSILIAELLEVLEPA 740 Query: 759 HYLPGDEALNCDESEARVKAHLTCL--HTRMPFDPQ--NYQPGERQSYAREWLPAASQAG 814 D EAR+ A L H PF P N + ER R L A Sbjct: 741 LAEKTD-------GEARLAAREKLLVEHPLQPFSPDYFNGRADERMVSFRSDLCDALNLK 793 Query: 815 KAHSEFVQPL--------------------------PFTLPET----VPLETLQRFWAHP 844 K + L P P+ V L+ L RF+ HP Sbjct: 794 KEKINIKEELEYDTSEDGLDNDIGDELAAGTPFFRAPLAFPDASWRDVLLDDLIRFFCHP 853 Query: 845 VRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAA 904 R + RL ++F ++ E+ EPF ++ +R ++ +LL ++ E + R A Sbjct: 854 NRYLMRSRLGLDFPRKEKELASDEPFTVDRTARRRLADRLLPLYLDGMAPEDIARSAAAG 913 Query: 905 GDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG------QSMEIDLACNGVQITGWLPQ 958 + P GA G +++ E+ A + A + G +++E DL +++G L Sbjct: 914 NEFPAGAMGAQQRQSELMELSAFAQALSADLKTGFVAPVSRTLEFDLGGEIWRLSGSLSD 973 Query: 959 VQPDGLLRWRPSLLSVAQGMQLWLEHLVY--CASGGNGESRLFLRKDGEWRFPPLAAEQA 1016 V+ GL+R+R + + W+EHL CA G S ++ +DG+ P +A Sbjct: 974 VRKTGLIRYRYDEGAPRDYLAAWIEHLFLNACAPEGVALSSVWHFRDGKTVLEPYGRARA 1033 Query: 1017 LHYLSQLIEGYREGMSAPLLVLPESGGAW 1045 + L L++ YR G++ PL P S AW Sbjct: 1034 V--LRDLMDIYRTGLNRPLHFFPRS--AW 1058 >UniRef50_A1SDB1 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Actinomycetales RepID=A1SDB1_NOCSJ Length = 1113 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 324/1157 (28%), Positives = 530/1157 (45%), Gaps = 121/1157 (10%) Query: 2 LRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG----- 55 L+++ ++R DVL +AL + + R L DPF E+++V + G+ +WL LS + G Sbjct: 3 LQIHRASRTDVLADALGDLL--RTPLADPFAEEVVVVPAKGVERWLTQRLSHRLGAGPRG 60 Query: 56 ---IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLL-EREDFTLL 111 + A + F P S + + R ++ ++ + + W L+ + + L ERE TL Sbjct: 61 DDGVCAGVRFLNPRSLVSLLLGR-----ERDDPWDPERLVWPLLATIDESLGEREFATLG 115 Query: 112 RH--YLTDDSD----KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQ--- 162 RH + D +D + + + ++ + A LF Y + RP + W G E GE Sbjct: 116 RHLGHGVDGADGELRRNRRYSVALRLAHLFASYALQRPSLVTAWREGRDGEHGGEQGLPP 175 Query: 163 --AWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 AWQ LW+ L+ Q+ P + + L++ P LP R+ + G + +P Sbjct: 176 DLAWQPELWRRLIA---QVDAP--PPDVRHAQTCAALQAGGDGLP-LPDRLSLFGHTRIP 229 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 + L+ALG+H ++HL P W D+ D ++ R S E Sbjct: 230 VTEVALLKALGEHRDVHLFLPQPSPVLWDDLADLGGPGGVVPRAADDSVE---------- 279 Query: 281 ENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQEL------DAFVDVTPDNL 334 VG+PLLAS G+ R+ LL D SS+E+ P L Sbjct: 280 -------------RVGHPLLASLGRDARELRRLL-DGVSSEEVRPPAGTPTGSTTDPVTL 325 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 L +Q D+ RA + +E S R LDP D S+ H CH P R+V+VL + L+ Sbjct: 326 LGWLQHDL-----RANHAPSYDERS----TRELDPDDHSLQVHACHGPARQVDVLREVLV 376 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY----LPYAISDRRARQSHPV 450 +LE+DPTL PRD++VM DI++Y+P I A FG A D + L ++DR ++P+ Sbjct: 377 GLLEDDPTLEPRDVLVMCPDIETYAPLISAGFGLATTDGHPAHRLRVKLADRALTSTNPL 436 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 L LL L R + DVL L + RF T++ L + +WV +G+RWG+D+++ Sbjct: 437 LAVAGDLLDLAGGRVTASDVLDLAGTDPVRRRFGFTDDELDRVSRWVARAGVRWGLDEES 496 Query: 511 VRELELPATGQHTWRFGLTRMLLGYAMES-AQGEWQSVLPYDESSGLIAELVGHLASLLM 569 + +TWR GL R+LLG AM LP D+ + +L G LA L+ Sbjct: 497 RAAFRMERFPHNTWRTGLDRILLGVAMSGDDHHHLGRGLPLDDVASSEIDLAGRLAELVA 556 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYG 629 +++ LA R + +W RD + + D + A + + + + A + G Sbjct: 557 RVDRTLTVLAGARTVADWATGLRDGVRSLV--DVAADDAWQVPQFERELGRAAASSHEGG 614 Query: 630 DAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 + L+ +R L RL F G + + T++PMRS+P +VVCL+G++DGV+PR Sbjct: 615 LELRLADVRAMLESRLAGRPTRANFRTGSLTVATMVPMRSVPHRVVCLVGLDDGVFPRAG 674 Query: 690 APLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 A G D++ + P G+R R +DR L L+A+++A + L I+Y G Q + P+V + Sbjct: 675 AVDGDDVLGRHPLTGERDVRSEDRQLLLDAVLAATEHLVITYSGADEQSGASLPPAVPLG 734 Query: 750 ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPA 809 E++D ++ P V+ + H P+D +N+ S+ L Sbjct: 735 EILDAADRTTNAP-------------VRDRVLTRHPLQPYDARNFTRERPFSFDTAALAG 781 Query: 810 ASQAGKAHSEFVQPLPFTL---------PETVPLETLQRFWAHPVRAFFQMRLQVNFRTE 860 A A E L L V L+ L+ F HPVRAF + RL V E Sbjct: 782 ARSARGVRREPPPLLDGPLPPRLALDGRAADVSLQDLRDFLGHPVRAFLRGRLDVATPFE 841 Query: 861 DSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQ 920 ++ D P L+ L ++QI +LL L+ D + + AG LP G + Sbjct: 842 PDDLADAIPVSLDSLEKWQIGDRLLRQLLAGQDPVAVLTAEQLAGTLPPRGLGTLALHEV 901 Query: 921 CQEMQQLADRVIACRQPGQSMEIDLAC---NGVQITGWLPQVQPDGLLRWRPSLLSVAQG 977 +E Q+L R R G+ +D+ +G ++TG +P V ++ S L+ Q Sbjct: 902 AEECQRLWSRTADLRD-GERRSVDVDVDLRDGRRLTGTVPGVYGSRVVSLGYSRLNARQR 960 Query: 978 MQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAA------EQALHYLSQLIEGYREGM 1031 + W++ L A+ + G+ R P A +A+ +L L++ G+ Sbjct: 961 LHAWVDLLALSAT--YPDQHWTAHAVGKDRAGPKRALCGPLDHRAVGWLRDLVDLRDRGL 1018 Query: 1032 SAPLLVLPESGGAWLKTCYDAQ-NDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWY 1090 APL V ++G AW DA + M D ++ AR ++ + GE D ++ Sbjct: 1019 CAPLPVPVKTGAAW----ADAHARELMGQDHPPVEAARREWETDPHNQFGITGEDADPYH 1074 Query: 1091 QRLWRQLTPETMEAIVE 1107 QR++ P +EA+++ Sbjct: 1075 QRVYGPAAP--VEALLD 1089 >UniRef50_C6NU56 Exodeoxyribonuclease V gamma chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU56_9GAMM Length = 1146 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 341/1083 (31%), Positives = 508/1083 (46%), Gaps = 118/1083 (10%) Query: 4 VYHSNRL-DVLEALMEFIVERERLDDPFEP---EMILVQSTGMAQWLQMTLSQKFGIAAN 59 V H +RL D+L A+ +++ +P P + LVQS + +WLQ L++ GI A Sbjct: 11 VLHGDRLEDLLTAIRQWLGA-----NPLPPLVEDTFLVQSNAVGEWLQWQLAEGDGICAG 65 Query: 60 IDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLERED---FTLLRHY 114 I LPA F+W+ + RVL +P ++ ++K ++ W+L+ LLP+L D LLR+ Sbjct: 66 IRVSLPARFLWESYRRVLGPRGVPDDTVWSKAALRWRLLRLLPRLAHEADPGGVPLLRYL 125 Query: 115 LTDDSDK-RKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--LVEGLG------EAQAWQ 165 T DS + ++L+ ADL DQY VYR DWL W G L +G G + Q WQ Sbjct: 126 ATTDSSALERRWRLAGLLADLLDQYQVYRADWLKDWAAGRWTLRDGRGVLRDLPQDQRWQ 185 Query: 166 APLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 A LW L + G R +++ F++ L A LP R+ G +LP L+ Sbjct: 186 AQLWHWLCREVTEGGSHFAGRGEIHEAFLQRLREAAPGSLDLPPRLIFFGAVSLPAQSLE 245 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 AL ALG+H+++ + NP Y+W D+ + D +L R G Sbjct: 246 ALAALGRHLQVLMAIPNPSAYHWSDV----------------AGADEDLRRQRRRRVLGT 289 Query: 286 LFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS---------QELDAFVDVTPDNLLH 336 E G LLA+WG+ GRD++ LL + S Q +D F + T LL Sbjct: 290 -----SEAGFGPRLLAAWGRQGRDFMRLLDRFDESVEMGPLWGLQRVDFFTEDTGTTLLR 344 Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 +Q+ I +L + G + E D S+ H + P RE++VL D LL Sbjct: 345 QLQTRIRDLVDSREPGRTLAEN------------DDSLVLHSSYGPLRELQVLQDELLLR 392 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAF 454 L L PRDI+VMV DI SY+P +QAVFG + RY+P+ I D ++ ++ A Sbjct: 393 LGRGRGLRPRDIVVMVPDIASYAPLVQAVFGVYGKNDPRYIPFHIVDLTPQERSNLIRAL 452 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 + LL LP R ++ LLD L RF + E L + W+ + G RWG+ + +L Sbjct: 453 VWLLGLPQGRVTQSEIRDLLDCSALQRRFGLAPEDLPQIHAWLEQGGWRWGLSAAHRADL 512 Query: 515 ELPATGQHT-WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNI 573 A G T F L +LLGY + + + E L A L+G L L +L Sbjct: 513 GFAACGAPTSGAFALQSLLLGYT-NGSDSHFDGIEACAEVGSLDAALLGKLWVLWERLES 571 Query: 574 WRRGLAQERPLEEWLPVCRDMLNAFFLP-DAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 WR+ L + E W+ R +L FF+ D A+ +E + + + A + + Sbjct: 572 WRQRLKEATTPEHWVERARQLLADFFVASDTADREALEQLESALEDWLLQTEKAAWDGPL 631 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 PL + R+ L+ FL G V CTLMPMRSIPF++VCLLGMND YPR Sbjct: 632 PLEIFREAWLDGLESAGDGA-FLGGGVTFCTLMPMRSIPFRMVCLLGMNDEDYPRPDPRR 690 Query: 693 GFDLMS--QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 FDLM+ + GDRSRR+DDRYL LEAL+SA+ LY+S+ GR ++ R PS L+ + Sbjct: 691 DFDLMTLPDMARPGDRSRREDDRYLMLEALLSARDGLYLSWTGRDPRNQENRAPSALILQ 750 Query: 751 L-IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPA 809 L + +G + G++AL R + HL L PF P+ +P +S+AREW P Sbjct: 751 LQREIVG----IWGEDAL-------RTRLHLDPLQ---PFSPRYLEPDGPESFAREWFPV 796 Query: 810 ASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 ++ ++ + P + L L+ + + +F+ +RL V D D E Sbjct: 797 STVEDRSVAVLSPPAARL---ELALLDLKGALSDALASFYALRLGVESPWRDRMAADDEA 853 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L+GL ++QI QQL + G LP A G + Q Q + L + Sbjct: 854 FRLDGLGQWQILQQLWERAASPAELREGLAAEARRGHLPLAAAGIL----QQQRLLTLME 909 Query: 930 RVIACRQP--------GQSMEIDLACNGVQITGWLPQ-----VQPDGL-LR------WRP 969 ++ Q + +E + +G ++ LP+ P G+ LR W Sbjct: 910 SLLGSWQAVAEALGPEHEVLEDEFLGDGFRLQARLPKDRSWNANPLGIHLRRHTSKLWHG 969 Query: 970 SLLSVAQGMQLWLEHLVYCASGGNGES-RLFLRKDGEWRFP-PLAAEQAL-HYLSQLIEG 1026 + + WLE V G LFL +DG P P+AA+++L L+ L E Sbjct: 970 GKARADRLLLWWLELTVLQTKRREGAVLGLFLGQDGWLCAPAPVAADESLAELLAWLGEA 1029 Query: 1027 YRE 1029 RE Sbjct: 1030 LRE 1032 >UniRef50_Q9RNX7 RecC1001 (Fragment) n=71 Tax=Bacteria RepID=Q9RNX7_ECOLX Length = 200 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 196/201 (97%), Positives = 198/201 (98%), Gaps = 1/201 (0%) Query: 555 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ 614 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ Sbjct: 1 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ 60 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD+ +S RFLAGPVNICTLMPMRSIPFKV Sbjct: 61 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDKN-VSARFLAGPVNICTLMPMRSIPFKV 119 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR Sbjct: 120 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 179 Query: 735 SIQDNSERFPSVLVQELIDYI 755 SIQDNSERFPSVLVQELIDYI Sbjct: 180 SIQDNSERFPSVLVQELIDYI 200 >UniRef50_C6HV34 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV34_9BACT Length = 1124 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 311/1046 (29%), Positives = 496/1046 (47%), Gaps = 134/1046 (12%) Query: 2 LRVYHSNRLDVL-EALMEFIVE--RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 +R++ S+R+++L EA + + E DP P ++ Q+ +WL L+++ GI+A Sbjct: 3 IRLFESHRMEILAEAFVATLASAAEEGDLDPLRPRTVIPQNPVTGRWLSFYLARRTGISA 62 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 ++D PL +I F R+ F+++++ +++ LLP LL F+ + H+ D+ Sbjct: 63 SLDLPLAGRYIRGFFDRLHGPASGTLHFDRETLLLRILALLPDLLPLPAFSPVAHFAGDE 122 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE-------AQAWQAPLWKA 171 + +L+ L++ ADL+D+ ++YRP+ L WE EGLG + W A LW+ Sbjct: 123 PESLRLYDLAALLADLYDRSMIYRPELLLAWE-----EGLGGRDDDPVGPEGWPAVLWRL 177 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPG-LPSRVFICGISALPPVYLQALQAL 230 L L HRA + RF L PP LP + + G++ + P+ L+ + L Sbjct: 178 LSGPDRPL-----HRARMMVRF---LSGEDPVPPEILPPALTLFGLTGMAPLDLRFFRTL 229 Query: 231 GKH--IEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 G+ + L F NP R YWGD+ + +R+R + E + LFR Sbjct: 230 GERHGCAVDLFFLNPSREYWGDV--------VRSRRREETPESLQPYLFR---------- 271 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENR 348 G PLL+SWG R L+++ + L F P LL IQ DIL L +R Sbjct: 272 -------GTPLLSSWGGEFRTVHESLAEIPEAHRL--FFGTEPGGLLGQIQEDILTLFDR 322 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 V R + R D S+ RE+E+L DRLL + DPTLTP D+ Sbjct: 323 GEE-VRSGRIERKEIPR----ADRSVEIVSATGRVREIEMLRDRLLELFAGDPTLTPEDV 377 Query: 409 IVMVADIDSYSPFIQAVF-----------------GSAPA----DRYLPYAISDRRARQS 447 +V+ DI Y+ +++VF GSA + D +P+ ISDRR + Sbjct: 378 VVLAPDILPYAGIVRSVFSPGISPSGGRAGTNGGEGSAGSSEDGDPRIPFVISDRRETDA 437 Query: 448 HPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGID 507 P +A + LLSLP R ++ LL VP +A RFD+ + + +R+ + E G RWG D Sbjct: 438 SPAFQALLLLLSLPGERVTVSHLVTLLAVPSIARRFDLGGQKIDRIREILAEGGFRWGRD 497 Query: 508 DDNVRELELPATGQHTWRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLAS 566 ++ E+ P+ H++ +GL R+LLGYA + E V P + E+ G L+ Sbjct: 498 IEDRSEVA-PSVDTHSFFWGLDRLLLGYACGPEEAPEGLPVPPVAVTEDPGGEIAGALSR 556 Query: 567 LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLG- 625 L L+ L P EW + +L FF P AE + + ++ I EG Sbjct: 557 FLWTLDRHLERLKDPHPAREWPGLLATILEIFFDP-AEGDPVLEIL-FALPGEIREGFSR 614 Query: 626 AQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 A + + + +A+ + RFL G V+ ++P+RS+PF+VVCLLG+NDG + Sbjct: 615 ASFDGEISSRWMGRHIARMAESREGRDRFLTGGVSFGRMVPLRSLPFRVVCLLGLNDGEF 674 Query: 686 PRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 PR P FD ++ +P+ GDRSRR+DDR LFLEAL+SA+Q L++SY+GR +D S + PS Sbjct: 675 PRVHHPPSFDWLAARPRPGDRSRREDDRTLFLEALLSARQVLWLSYLGRESRDGSPKEPS 734 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY--QPGER-QSY 802 VL++E D + + E ++ + P P +Y P R S+ Sbjct: 735 VLLREFEDVVAEG---------FTGEGGEEIQKQILLEAPVDPLSPSHYGDSPDPRLHSF 785 Query: 803 AREW---LPAASQAG-KA----HSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQ 854 +R W L A+ G KA + + P+P + L+ L+ F ++P R F RL Sbjct: 786 SRSWREVLDASRNDGWKAPVFWDRDLLLPMPEPGAAGILLDDLRFFHSNPARFFLLRRLG 845 Query: 855 VNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE 914 + R + ++PD EPF L +++L L + R F G +P+ G Sbjct: 846 FSSRAREIDLPDDEPFSLS-------LREILKGLDQ--------RSFEVDG-IPWPPLGP 889 Query: 915 IFWETQCQEMQQLADRV-----IACRQPGQSMEIDLACNGVQITGWLPQV---QPDGLLR 966 + + R+ + +P +++EI L GV++ G L + G +R Sbjct: 890 LQLSEGIRHKGDHVGRIGRLLGLLSGEP-EAVEISLELLGVRLVGRLSGILTKTEGGRVR 948 Query: 967 ----WRPSLLSVAQGMQLWLEHLVYC 988 W P + + + +LEHLV C Sbjct: 949 VVDLW-PGKIYPSHQVTAYLEHLVAC 973 >UniRef50_UPI0001C32181 exodeoxyribonuclease V, gamma subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32181 Length = 1143 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 302/1023 (29%), Positives = 448/1023 (43%), Gaps = 130/1023 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG----- 55 ML V+H++ D L A + ++ RL DPF E++ V + G+ +WL LS + G Sbjct: 1 MLHVHHADGADRLVAALAEVLT-VRLADPFAAEVVAVPTRGVERWLAQRLSGRLGTSPGA 59 Query: 56 ---IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFT--- 109 I AN+ FP P + + I S + + W+ L LLE D Sbjct: 60 GDGICANVAFPTPRRVVEEA-------IAAASGLDAATDPWRPERALWPLLELVDAASDE 112 Query: 110 -----LLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA--- 161 L H D+ + A LF +Y ++RP L W G +G G A Sbjct: 113 AWLGRLTAHLDRAAGDRSRRLSAVRHVATLFARYALHRPAMLRAWAAGSDEDGAGGALDA 172 Query: 162 -QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGL---PSRVFICGIS 217 WQA LW+ L E G ++ + PGL P R+ + G++ Sbjct: 173 EHRWQAELWRRLRERVGVPGP---------AELLDLGRARLVEDPGLSDLPERISLFGLT 223 Query: 218 ALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLF 277 +LP LQ L+AL + ++HL P W I D A +LTR + S LP Sbjct: 224 SLPARDLQLLRALAERRDVHLFLLMPSPAAWRGIADAAGRGPILTRGQALSAA---LP-- 278 Query: 278 RDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLES-SQELDAF-VDVTPDNLL 335 +PLLASWG+ GR+ LL L + + DA PD LL Sbjct: 279 ------------------AHPLLASWGRDGRELQLLLEPLPTEAVHADAIGAGDEPDTLL 320 Query: 336 HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLA 395 +Q+DI + R D L D+S+ HVCH R+VEVL D +L Sbjct: 321 ARVQADI-----------RADRTPREDEPVQLGDGDASVQVHVCHGRARQVEVLRDAILH 369 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD-----------------RYLPYA 438 L +DP+L PRD+IVM DI++++P ++A FG+ AD L Sbjct: 370 ALADDPSLEPRDVIVMCPDIETFAPLVEATFGAGEADVGEALADDAVDLSGAHPAELRVR 429 Query: 439 ISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVN 498 ++DR RQ++PVL LL L +R + ++L L+D + RF + E+ L + WV Sbjct: 430 LADRSLRQTNPVLGVVTKLLELATARVTASELLDLVDREPVRRRFRLEEDELARVEDWVA 489 Query: 499 ESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLI 557 SGIRWG+D + L Q TW GL R+L G AM G VLP D+ Sbjct: 490 ASGIRWGLDAAHRAPFRLQHVPQGTWAAGLDRLLTGVAMAERPGHTLAGVLPLDDVDSSA 549 Query: 558 AELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR---DMLNAFFLPDAETEAAM----- 609 +L G A LL +L LA +P+ W D + A DA A + Sbjct: 550 IDLAGRFAELLDRLAAALDELAAPKPISAWATAIAEAADTMTATTPRDAWQRAELQQLLA 609 Query: 610 TLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRS 669 ++E+ +A + D L L RL F G + +CTL PMRS Sbjct: 610 DVVEEATNDGVASAVSLDVADVAAL------LGGRLAGRPTRTNFRTGHLTVCTLQPMRS 663 Query: 670 IPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYI 729 +P +V+CLLG++D V+PR+ G D++ +P GDR R +DR + L+AL++A +L + Sbjct: 664 VPHRVICLLGLDDDVFPRRSPRDGDDVLLDEPWIGDRDGRSEDRQILLDALMAAGDRLIV 723 Query: 730 SYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPF 789 +Y GRS + N+ER P+V + EL+D I ++ C R + + H PF Sbjct: 724 TYSGRSERTNAERAPAVPIGELLDVIDRT---------ACAADGGRARDAVLVRHPLQPF 774 Query: 790 DPQNYQPG----ERQ-SYAREWLPAASQAGKAHSEFVQPLPFTL----PETVPLETLQRF 840 D N+ P +R S+ L A G LP L + + L+ L F Sbjct: 775 DAANFAPSTLVPQRAWSFDGVTLEGARALGGERGSRPPFLPRPLQPQDADVIELDQLLAF 834 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 HPVRAF + RL V E D+ P L+ L+R+ + +LL A D Sbjct: 835 VGHPVRAFLRQRLGVGVDVGAGERSDSLPIELDPLARWGLGARLLAARRAGVDVGVAVAD 894 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQL---ADRVIACRQPGQSMEIDLAC-NGVQITGWL 956 RA G +P GA G+ E++ + A + P +++++ +A +G + G + Sbjct: 895 ERARGSVPPGALGDQVLRGVVAEVEAILGAAAETVGAGGPLRTLDVRIALEDGRTLAGTI 954 Query: 957 PQV 959 V Sbjct: 955 GGV 957 >UniRef50_C7PDT3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT3_CHIPD Length = 1063 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 298/1033 (28%), Positives = 488/1033 (47%), Gaps = 113/1033 (10%) Query: 30 FEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQ 89 FE +I+ Q+ GM WL++ L++ GIAAN F P I ++ L + + + Sbjct: 30 FEQHLIVTQTEGMNNWLKLQLAEYLGIAANCRFLKPNDLIHQIYF--LMDGQYSEMLSGR 87 Query: 90 SMSWKLMTLLPQLLEREDF---TLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWL 146 +++W L LL + + RE + H DSD +++ L+ + ADLFDQY +YRP+ + Sbjct: 88 NLTWLLYKLLGEDIFRETYPAVATYYHTTEPDSDLKRM-ALAERTADLFDQYQIYRPEMI 146 Query: 147 AQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPG 206 +W E WQ LW E G + + Q ++ L++ Sbjct: 147 NEWNAPP--EDPFAKIDWQQYLW---TEAKKVSGHALPDKTIIGQHILDMLKNPDH-QET 200 Query: 207 LPSR---VFICGISALPPVYLQALQALGKHIEIHLLFTNPC-RYYWGDIKDPAYLAKLLT 262 L R V + G+S + ++Q L L I+I+ NP YW D K A+ Sbjct: 201 LAHRMNTVHLFGLSIITAYHVQILHELSSFIDIYFHIINPSPELYWFDDKSEKQQARWRL 260 Query: 263 RQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLES--- 319 + R P+ +S+ AG NPLL WG++ +D L ++ Sbjct: 261 KGR---------PI-HESDTAG------------NPLLMGWGRVVQDTFGLFFKYDAFIN 298 Query: 320 SQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKR----PLDPLDSSIT 375 + E + V+ PD LL+ +Q DI F ++ +R P D D SIT Sbjct: 299 AYESEGLVEPQPDTLLNKVQHDI---------------FLNANEQRHPIFPEDVEDGSIT 343 Query: 376 FHVCHSPQREVEVLHDRLLAMLEED-PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY 434 + C++ REVEVL++ L+ ++++ TL+PRDI+VMV DID Y+P+I+A+F +AP Sbjct: 344 INNCYTVAREVEVLYNYLVHLVDKKRETLSPRDIVVMVRDIDVYAPYIKAIFNNAPYK-- 401 Query: 435 LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLR 494 Y I+D S + A ++L L + F +E+VL LLD + RF I L +R Sbjct: 402 FRYTIADESYADSDNLFNALHAILRLNEDNFKAEEVLQLLDSSYVRKRFGINNVPL--IR 459 Query: 495 QWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM----ESAQGEWQSVLPY 550 V+E+ IR+GI E L +W++G+ R++ G M E +GE + P Sbjct: 460 HVVDEANIRFGIHGAKEDETYLV-----SWKYGIKRIMYGICMSGDQEYGKGE-EGFFPL 513 Query: 551 D---ESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML-NAFFLPDAETE 606 D S L H A +L+ R+ +ER + W+ +L N + P+ E + Sbjct: 514 DILEGSDSLEVIRFCHFAEVLISAIEDRK---KERSISGWVEYIEGILHNMVYEPEEEID 570 Query: 607 AAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMP 666 + QQ L D V + Q L + F+ G + C+L+P Sbjct: 571 EDYNTLMQQLSDY--NLLNEYMSDTVAFDVFSHSFLQTLTGTTRTGLFVNGGITFCSLIP 628 Query: 667 MRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQK 726 MRSIPF+VV +LG++ +PR+ P+GF+LM + +RGDR+ +D+D++LFLE ++SA+Q Sbjct: 629 MRSIPFRVVAMLGLDYDKFPRREQPIGFNLMEKNKQRGDRNVKDNDKHLFLETVLSARQY 688 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTR 786 LYISY+G+S +DNS PS LV EL+DYI C+++E V+ L Sbjct: 689 LYISYVGQSAKDNSRMPPSALVDELLDYIESG----------CEDAEG-VRNRLVTRQPL 737 Query: 787 MPFDPQNYQPGER-QSYAREWLP--AASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAH 843 F + Q ER SY +P ++A KA QP E + L+ L RF+ + Sbjct: 738 QGFSRKYGQGDERLYSYLNTAVPERIITRADKAME---QP----SIEEIDLDELVRFFKN 790 Query: 844 PVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRA 903 P +A++ L + + E + +TE F L+ L ++ + +LL ++ + + R Sbjct: 791 PFKAYYNKVLGIYYNDEQVLLNETEIFHLDSLQKWSLKNELLQ--MDTNAIANMKIRLVK 848 Query: 904 AGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSMEIDLACNGVQITGWLPQVQP 961 G LP + + E+Q + ++ AC QS++++L G + G + V Sbjct: 849 TGRLPLKNMAYVALQQIEAEVQPVREKFRACINGAEEQSVQVNLDIEGTLLKGTINGVFD 908 Query: 962 DGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL---RKDGEWRFPPLAAEQALH 1018 L++ S M+ ++ +L A+G + F+ K + PLA ++AL Sbjct: 909 GKLVQVSWSKREDKYLMEAYIRYLAGRAAGV-LDGMCFISGASKREAFEAIPLAQQEALR 967 Query: 1019 YLSQLIEGYREGM 1031 L+ L++ +REG Sbjct: 968 RLTALVKIFREGF 980 >UniRef50_P96921 Exodeoxyribonuclease V gamma chain n=23 Tax=Mycobacterium RepID=EX5C_MYCTU Length = 1097 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 271/933 (29%), Positives = 429/933 (45%), Gaps = 130/933 (13%) Query: 28 DPFEPEMILVQSTGMAQWLQMTLS--------QKFGIAANIDFPLPASFIWDMFVRVLPE 79 DPF E++LV + G+ +WL LS + G+ A I F P S I ++ + Sbjct: 28 DPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL--- 84 Query: 80 IPKESAFNKQSMSWKLMTLLPQLLE----REDFTLLRHYLTDDSD----KRKLFQLSSKA 131 + ++ ++++W L+ ++ L+ R + L H+ T D++ + + + ++ + Sbjct: 85 --DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRRYSVARRL 142 Query: 132 ADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQ 191 A LF Y RP LA W G L E G+ AWQ PLW+ALV T P + Sbjct: 143 AGLFASYARQRPGLLAAWLDGDLGELPGDL-AWQPPLWRALV-TTVGADPP-------HV 193 Query: 192 RFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDI 251 R +T+ P LP+R+ + G + L +Q L AL H ++HL +P W Sbjct: 194 RHDKTIARLRDGPADLPARLSLFGHTRLACTDVQLLDALAVHHDLHLWLPHPSDELW--- 250 Query: 252 KDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYI 311 R L F+ ++ + +PLL + LGRD Sbjct: 251 --------------------RALAGFQGADGLLPRRQDTSRRAAQHPLLET---LGRDVR 287 Query: 312 YLLSDLESSQELDAFVDVT--PDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDP 369 L L +++ D F+ T PD LL +Q+DI AG RS L Sbjct: 288 ELQRALPAARATDEFLGATTKPDTLLGWLQADI--------AGNAPRPAGRS-----LSD 334 Query: 370 LDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG-- 427 D S+ H CH P R+++VL + LL +LE+DPTL PRDI+VM DID+Y+P I A FG Sbjct: 335 ADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRDIVVMCPDIDTYAPLIVAGFGLG 394 Query: 428 -----SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR 482 PA R L ++DR Q++P+L LL++ ++R + +L L + A+ Sbjct: 395 EVAGDCHPAHR-LRVRLADRALTQTNPLLSVAAELLTIAETRATASQLLNLAQAAPVRAK 453 Query: 483 FDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM-ESAQ 541 F ++ L + WV ES IRWG D + R L +TWRFGL R+L G AM E +Q Sbjct: 454 FGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVHNTWRFGLDRILTGVAMSEDSQ 513 Query: 542 GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP 601 + LP D+ EL G LA + +L+ GL+ RPL WL ++ Sbjct: 514 AWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLSGARPLVAWLDALATGIDLLTAC 573 Query: 602 DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNI 661 + + A +++++ ++A G++ + L +R L +L F G + + Sbjct: 574 NDGWQRAQ--VQREFADVLARA-GSRAAPLLRLPDVRALLDAQLAGRPTRANFRTGTLTV 630 Query: 662 CTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALI 721 CT++PMRS+P +VVCL+G++DGV+PR P G D+++++P G+R R +DR L L+A+ Sbjct: 631 CTMVPMRSVPHRVVCLVGLDDGVFPRLSHPDGDDVLAREPMTGERDIRSEDRQLLLDAIG 690 Query: 722 SAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLT 781 +A Q L I+Y G + R P+V + EL+D + Q+ P V+ + Sbjct: 691 AATQTLVITYTGADERTGQPRPPAVPLAELLDALDQTTSAP-------------VRERIL 737 Query: 782 CLHTRMPFDPQNYQPGE-----------------RQSYAREWLPAASQAGKAHSEFVQPL 824 H PFD +N PG + + + P A +G+ L Sbjct: 738 VTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQAAAGKRCPPTAFISGR--------L 789 Query: 825 PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQ- 883 P V L L F+ PV+ FF+ L + + D+ P ++ L+ + + ++ Sbjct: 790 PAPPAADVTLADLLDFFKDPVKGFFRA-LDYTLPWDVDTVEDSIPVQVDALAEWTVGERM 848 Query: 884 ---LLNALVEQDDAERLFRRFRAAGDLPYGAFG 913 +L L D A +RR G LP G G Sbjct: 849 LRDMLRGLHPDDAAHSEWRR----GTLPPGRLG 877 >UniRef50_B5JHV1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHV1_9BACT Length = 1133 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 290/1104 (26%), Positives = 475/1104 (43%), Gaps = 106/1104 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L ++ SNR++ L A + I + L P E ++ + G+A+WLQ +++ G++ D Sbjct: 35 LYLHTSNRVENLAARLVEICQAVPLSRPLSQETVMTLNPGIARWLQFEIAKATGVSFGWD 94 Query: 62 FPLPASFIWDMFVRVL----PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 FPLP +F RVL P F + WKL+ +L L ++ F +R Y Sbjct: 95 FPLPGK----LFARVLRGFEPGFDTNGVFPEDLARWKLVEILSTLEDQPRFAQVRAYCQT 150 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTH 177 +L +++ L+D+YLVYRPD + QWE WQA +W+ LV + Sbjct: 151 AEGSHRL-AFANRLTRLYDEYLVYRPDIVTQWEDDPGSSNFD----WQAEIWRRLVRLVY 205 Query: 178 QLGQPRWHRANLYQRFI--ETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 + H A ++Q + LE P P R+ + G+S+L P+YL L L ++ Sbjct: 206 PKNRKPRHIARVWQDLSRGQILELGLQ-PQAWPERLLVFGVSSLAPLYLDLLDQLARYRP 264 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN-----SD 290 +H+ P YW D+K + K+ + AG+ N D Sbjct: 265 VHIFLLQPSDMYWADLKTTKQIQKIAMKA------------------AGETGNRITSPED 306 Query: 291 GEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVD-VTPDNLLHNIQSDILELENRA 349 + GN LL S GK + ++ LL D Q+ AF + L +QSD+ +E+R Sbjct: 307 WLYETGNALLPSLGKQSQMFLDLLIDKNPQQDDTAFEPPFDESSQLACLQSDLFTIEDRD 366 Query: 350 VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDII 409 +A D ++ H C +REVE + D ++ L+E+P L +I+ Sbjct: 367 LA----------KGGDAFSAYDGTLQVHSCSGRRREVETVWDLIVRRLDENPELKASEIL 416 Query: 410 VMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 VM DI +Y I+AVF S +P++++D A V ++L R S Sbjct: 417 VMAPDIQAYRSHIEAVFRSKRGTHLEIPFSVADNSAGNRPGVFSGIFAILQSASGRASSA 476 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 +VL LL+ P+L + +++ L + W+ E GI WG D D+ + E AT ++TW Sbjct: 477 EVLELLECPLLREVYSFSDQDLERIEFWIRELGITWGWDSDHRDQRESFATDRNTWSELR 536 Query: 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588 +R+ G A S + L Y E G ++E G L L L R Q L W Sbjct: 537 SRLSAGIAFSSEVETPKGFLAYSEIEGELSETAGRLLECLDLLGSLRHNFRQTHSLAVW- 595 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQA-------IIAEGLGAQYGDAVPLSLLRDEL 641 +D L A A + WQ +I E L A S L Sbjct: 596 ---QDRLLAML-------ATLKSQRDDWQRDYVQASDMIHETLPALDDVFATGSEAYRAL 645 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 +++L+ +L+G V C+L PMR+IP VC++GMN +PR+ L FDLM+++ Sbjct: 646 SEKLESSASGGGYLSGGVTFCSLKPMRAIPADTVCIMGMNRLDFPRRSNRLSFDLMAKES 705 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 + GDR+ RD+DR FLE L+S + +I+Y G S ++ PS +++EL+ Y+ + L Sbjct: 706 RIGDRNTRDEDRQFFLETLLSVRSHFFITYQGTSSNSDTVNEPSAVLEELLSYLETAMPL 765 Query: 762 PGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLP--------AASQA 813 E R+ R FDP +Q +Y + S+A Sbjct: 766 ---------EDFKRILTQ----QKRQSFDPVYFQNDRNGTYDPDRAALRNRFNGLQTSEA 812 Query: 814 GKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 +E Q + E + L+ L RF++ P +AF +V +E+ + +++ + Sbjct: 813 KAVSTELEQTQGEEISE-IELDALIRFFSDPAKAFASNVSKVKLVSEEDALEESDALLSG 871 Query: 874 GLSRYQINQQLLNALVEQDDAERL-FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVI 932 GL R+QI + + + E L + LP G + ++ + QLA+ + Sbjct: 872 GLDRFQIRNEFAERIARGEPLEELSIKALSQRKLLPAGLLETPTFASEYERAAQLAESIG 931 Query: 933 ACRQPGQSMEIDLACNGVQITGWLPQVQPDGL-LRWRPSLLSVAQGMQLWLEHLVYCAS- 990 + +DL G+ + G DG + L + + W+ HL + AS Sbjct: 932 NVETSTHYVSVDL--EGITLLGESTTRLEDGRQVLIHAGELKPKRVVDAWIRHL-FAASL 988 Query: 991 --GGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLP----ESGGA 1044 +GE+ LF + E L+ L + + G +PL P + A Sbjct: 989 DPHFSGETYLFSLHEKGSPIRLGQVENPRKLLADLAQAFASGQRSPLPFFPVLSYNAFRA 1048 Query: 1045 WLKTCYDAQNDAMLDDDSTLQKAR 1068 W +C D + + L++AR Sbjct: 1049 W-NSCSSESEDERIGE--ALERAR 1069 >UniRef50_D2PR48 Exodeoxyribonuclease V, gamma subunit n=12 Tax=Actinomycetales RepID=D2PR48_9ACTO Length = 1102 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 322/1158 (27%), Positives = 500/1158 (43%), Gaps = 158/1158 (13%) Query: 2 LRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIA--- 57 L ++ + R DVL + L E + L DPF E+++V + G+ +WL L+ + G A Sbjct: 3 LYLHRAERTDVLADGLGELLATP--LADPFAEELVVVPAKGIERWLSQRLAHRLGAAEGS 60 Query: 58 -----ANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLERE-DFTLL 111 A + F P S + + + ++ + +M+W L+ +L + L+ + Sbjct: 61 GDGVCAGVRFTSPRSLVSAVL-----GLDQDDPWAADAMAWPLLAVLDESLDDAWCEPVA 115 Query: 112 RHYLTDDSD------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG----EA 161 RH DS + + + ++++ A LF Y V RP L W G +G G + Sbjct: 116 RHLGQFDSGAEAELRRGRRYAVAARLARLFAAYAVQRPALLVDWGDGRDTDGRGVTIDDD 175 Query: 162 QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPP 221 AWQ LW+ LV+ P H + + Q + ES LP+R+ + G + LP Sbjct: 176 LAWQPELWRRLVDRIDAPPPPARHLSTVAQ-LRDRSESLD-----LPARLSLFGHTRLPL 229 Query: 222 VYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSE 281 ++ L AL +H ++HL +P W + Sbjct: 230 TEVELLSALAEHRDVHLWLPHPSGELWDRLT---------------------------GR 262 Query: 282 NAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVD--VTPDNLLHNIQ 339 AG Q +PLLA+ LGRD L L + +D + ++LL +Q Sbjct: 263 TAGDRAADTSHQMAEHPLLAT---LGRDSRELQLALAAVPAVDRHLPSPAARESLLGWLQ 319 Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 +D L V+ ++ +RP D S+ H CH R+V+VL D LL ML+ Sbjct: 320 ND---LRGNKVS---------AEGRRPAAE-DRSVQVHACHGTARQVDVLRDVLLGMLQA 366 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY------LPYAISDRRARQSHPVLEA 453 DPTL PRDI+VM DI++Y+P I A FG DRY L ++DR Q++P+L Sbjct: 367 DPTLEPRDILVMCPDIETYAPLISARFGLGDLDRYGHPAHRLRVQLADRSLTQTNPLLGV 426 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 LL L SR + VL L + + RF T++ L + WV E+G+RW D + Sbjct: 427 ASQLLDLAGSRATASQVLDLAETEPVRRRFRFTDDDLDTVTAWVREAGVRWAFDRGDRDR 486 Query: 514 LELPATGQHTWRFGLTRMLLGYAMESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLN 572 L Q+TWRFGL R+L G M + W + LP D+ EL G A + +L Sbjct: 487 FGLADYPQNTWRFGLDRVLAGVTMSADAHAWIGTTLPLDDVGSTRIELAGRFAEYVDRLR 546 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 L +PL WL RD + A+ + + +++ A +A G G + Sbjct: 547 AATDRLDGTQPLATWLDALRDGIERLTRVGADDGWQVGQVHREF-AEVAAGAGELAVTPL 605 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 L +R L+ L F +G + +CT++PMRS+P +VVCLLG++DGV+PR Sbjct: 606 RLPDVRSLLSAHLAGRPTRANFRSGSLTVCTMVPMRSVPHRVVCLLGLDDGVFPRFGLAD 665 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 G D++++ P G+R R +DR L L+A+++A + L I+Y G + R P+V + EL+ Sbjct: 666 GDDVLARCPVTGERDVRSEDRQLMLDAILAATESLVITYTGANEYSGQPRPPAVPLGELL 725 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAR-EWLPAAS 811 D + ++ +E+ V+ + H PFD +N + G + + PAA Sbjct: 726 DALDRT-------------TESPVRETVVVNHPLQPFDRKNLEAGRLGTPGPFTFDPAAL 772 Query: 812 QAGKAHSEFVQPL------PFTLP--ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 A + P P TLP E V L L F+ PV+ FF+ L V E Sbjct: 773 VAARVGGGSRPPRPAFLAEPLTLPGGEDVALADLLAFFRDPVKGFFRA-LDVTLPWEVDG 831 Query: 864 IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC-- 921 + D P ++ L ++ + ++L ++ + G LP G G W T Sbjct: 832 VSDAMPVEIDNLEKWSVGDRMLRDMLAGIHPDAALNAEWRRGTLPPGRLG---WRTATDL 888 Query: 922 -QEMQQLADRVIACRQPGQS---MEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQG 977 + LA RQ G + +++DL G ++TG +P V L+ S L Q Sbjct: 889 RDIARGLAVAAYPHRQGGATAYDVDVDLG-GGRRLTGTVPGVHGYRLVSVSYSRLDAKQL 947 Query: 978 MQLWLEHLVYCA----------------SGGNGESRLFLRKDGEWRFPPLAAEQALHYLS 1021 + W++ L A SG SRL F P+ A QA L+ Sbjct: 948 LTSWIQLLALSANDEDHNWTALAIGRPRSGRTPASRL---------FGPVGA-QARTLLA 997 Query: 1022 QLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMV 1081 LI Y G P L LP LKT + DD+ + R Y+ Sbjct: 998 DLISVYDGGRREP-LPLP------LKTSFAWCQARRTDDEPMIAAGRRWRPANYD----- 1045 Query: 1082 RGEGDDIWYQRLWRQLTP 1099 GE D + R+W P Sbjct: 1046 -GENADPAHVRVWGPNAP 1062 >UniRef50_C0ZQ87 Exodeoxyribonuclease V gamma chain n=6 Tax=Corynebacterineae RepID=C0ZQ87_RHOE4 Length = 1093 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 300/1078 (27%), Positives = 472/1078 (43%), Gaps = 121/1078 (11%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG----- 55 ML++Y + R D L + + ++ R L DPF E + V + G+ +WL LS + G Sbjct: 1 MLKLYRAERSDTLVSALATLL-RTPLSDPFARETVAVPAKGVERWLNQRLSSQLGTSGPS 59 Query: 56 ----IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL 111 I+ANI FP PA + + V + ++ + W ++ ++ + L +L Sbjct: 60 AVDGISANIAFPSPARLVAESVAAVSGITADDDPWSPTRLVWTVLDVIDESLGEPWCGVL 119 Query: 112 RHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA----WQAP 167 +L + R+ F ++ +LF Y RP L W G L +G G A + WQA Sbjct: 120 AKHLEGHREGRR-FASATHVTELFRSYAAQRPQMLIDWAAGRLTDGHGLALSEDFEWQAR 178 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW + + G P + + +E LP R+ + G + LP L Sbjct: 179 LWCIVADKIDVPG-PAERLGQVSRALVEDPALVD-----LPERLSVFGPTRLPVDQRMIL 232 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 AL + ++H+ +P PA K+ +R R R SE+ L Sbjct: 233 SALSANRDVHIWLPHPS---------PALWTKMSSR-----IPPRSESTIRRSEDGSALI 278 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVD--VTPDNLLHNIQSDILEL 345 ++ NPLL+S L RD L L +++ + P +LL +++D++ Sbjct: 279 SA-------NPLLSS---LARDVRELQISLGAAEFESVHLPEPAGPKSLLATVKADVIAD 328 Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 +VA +P D ++ H CH P R+VEVL + LL + E+DPTL P Sbjct: 329 RAPSVAA---------------EP-DGTVQVHACHGPARQVEVLRECLLRLFEDDPTLQP 372 Query: 406 RDIIVMVADIDSYSPFIQAVFGSA---PADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 RD++VM D+++Y+P ++A FG L ++DR RQ++PVL SLL L D Sbjct: 373 RDVLVMCPDVETYAPLVRAAFGQGVHGHPGHLLRVRLADRGLRQTNPVLAVLGSLLELAD 432 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 R + +VL L + RF E+ L LR+W E+G RWGI L A Q+ Sbjct: 433 GRATASEVLDLAAADPVRTRFSWGEDELERLREWTTEAGARWGIGSRQRATFGLDAFPQN 492 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSV-LPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 T+ + R+LLG + + ++ W + LP D+ G +L G A + +L + R LA Sbjct: 493 TFNTAMDRILLGVSADESENAWLDLALPLDDVDGTDIDLTGRFAEFVDRLAVSLRDLAGP 552 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEG---LGAQYGDAVPLSL-- 636 EWL V L+ L D T WQ+ A ++G L L Sbjct: 553 HSPAEWLRVLMRALD--LLTD-------TAPADSWQSAGAHRELVAAVEFGGETMLRLAD 603 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 +R L++ L F G + +CT++PMRS+P +VV L+G++D V+PR G D+ Sbjct: 604 VRAMLSRSLAGRPTRANFRTGELTVCTMVPMRSVPHRVVVLIGLDDEVFPRTGGVDGDDI 663 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 +S+ P G+R R +DR L L+A++SA + L + Y G R P++ + L+D + Sbjct: 664 LSRHPVVGERDLRSEDRQLLLDAVMSAGEHLILLYTGADPVTGVVRPPAIPLSGLLDVLS 723 Query: 757 QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKA 816 + G EA+N + H FD +N+ P + S+ L A A Sbjct: 724 ATV---GPEAING----------VLTRHPLQSFDNRNFSPDQPFSFDTAALAGARAAAGT 770 Query: 817 HSEFVQPLPFTL----PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFIL 872 E L L P+ V L L F HP R F + RL V D +I D+ L Sbjct: 771 PIELPTVLSAELLEVHPKEVNLADLVNFLVHPARGFLRQRLGVRVPELDDDIADSLATEL 830 Query: 873 EGLSRYQI-NQQLLNALVEQDDAERLFRRFRAA----GDLP---YGA--FGEIFWETQCQ 922 + LS + + ++ LL+ L + A+ FRAA G LP GA G + W Sbjct: 831 DPLSTWALGDRMLLSRLAGRSSAD-----FRAAEWRRGTLPPYNLGASVLGNVEW--VVD 883 Query: 923 EMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWL 982 ++ LA + ++IDL +G ++TG + V + ++R S L+ M W+ Sbjct: 884 QLAGLALPHLEGDSEAVDVDIDLG-DGHRLTGTVTGVHGNSVVRASYSSLAPKHRMTAWI 942 Query: 983 EHLVYCASGGNGESRLFLRKDGEWRFPPL-----AAEQALHYLSQLIEGYREGMSAPL 1035 L A G G G + A A L QL++ G+ PL Sbjct: 943 NLLALKAHGRPGALDAVSIGRGRGKIAAARSVLDAPGNAAEILQQLVDLRERGLQRPL 1000 >UniRef50_C8XGX0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGX0_NAKMY Length = 1141 Score = 318 bits (816), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 316/1142 (27%), Positives = 494/1142 (43%), Gaps = 156/1142 (13%) Query: 28 DPFEPEMILVQSTGMAQWLQMTLSQKFG--------IAANIDFPLPASFIWDMFVRVLPE 79 DPF +++ V + G+ +WL L+ + G I A + FP P + + + L Sbjct: 28 DPFGVDVVAVPTRGVERWLTQRLAHRLGTRDGRSDGICAAVRFPSPTTLVDE-----LAG 82 Query: 80 IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT---DDSD----KRKLFQLSSKAA 132 + + + W L+ + + LL +L DD+ + + + ++ + A Sbjct: 83 DRADDPWTPDAAVWPLLAAIEASVHEPWCALLAEHLGYRGDDAQAEHRRGRRYAVARRIA 142 Query: 133 DLFDQYLVYRPDWLAQWETGHLVEGLGEAQ----AWQAPLWKALVEYTHQLGQPRWHRAN 188 LFD Y +RP+ +A W G +G GE +WQ LW+ L + R + Sbjct: 143 GLFDGYAEHRPEMVAAWSQGGDDDGWGEPVPADLSWQPRLWRRLRD--------RIDAPD 194 Query: 189 LYQRFIETLESATTCPPG--LPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRY 246 F + P LP RV + G +ALP + L AL H ++HL +P Sbjct: 195 PVATFAQVAARLAADPGAVDLPERVSLFGATALPHRQVLLLSALAHHRDVHLWLPHPSPV 254 Query: 247 YW---GDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASW 303 W G+++ P + R RR RD AG + PLLAS Sbjct: 255 LWDRVGELRPP-----VPGRIRR-----------RDDPTAGAATH---------PLLAS- 288 Query: 304 GKLGRDYIYLLSDLESSQELDAF--VDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRS 361 +GRD L + L + D + D P LL +Q D+ S Sbjct: 289 --MGRDVRELRTVLAGRIDRDTWHRADDPPATLLGRLQRDL------------------S 328 Query: 362 DNKRP---------LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV 412 DN+RP +D D S+ H H P R+V+VL D ++ +L +DPTL P DI++M Sbjct: 329 DNRRPGPGMADKPVVDATDDSVRVHAAHGPGRQVDVLRDVVIGLLADDPTLHPADILIMC 388 Query: 413 ADIDSYSPFIQAVFGSA-------PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 DI++++P +Q FG A PA + L ++DR RQ++P+L LL L SR Sbjct: 389 PDIEAFAPLLQGAFGLADSVPDGHPAHQ-LQVRLADRALRQTNPLLATLDRLLDLAGSRV 447 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWR 525 + DVL + RF ++ L L WV +G RWG+D ++ R L GQ+TWR Sbjct: 448 TASDVLDFAAFAPVRHRFGFDDDELSTLADWVAAAGARWGLDAEHRRRYGLAEYGQNTWR 507 Query: 526 FGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPL 584 L R+LLG M G ++ LP DE +L G LA L+ +L L+ + Sbjct: 508 AALDRILLGVCMSDEPGNRLETALPLDEIGSADVDLAGRLAELIDRLATVVDTLSSRHSV 567 Query: 585 EEWLPVCRDMLNAF-FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA---VPLSLLRDE 640 + W C ++L L AA + E + + + A G + L+ +R Sbjct: 568 QRW---CAELLAGVQSLTSVPARAAWQVAEFRAEVAAVQRHAAAAGSTGLELGLADVRAL 624 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 LA L F G + +CT+MPMRS+P +V+CLLG++DGV+PR G DL+ ++ Sbjct: 625 LAGALAGRPTRANFRTGTLTVCTMMPMRSVPHRVICLLGLDDGVFPRGAREDGDDLLIRE 684 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 P G+R R DR L L+A+++A +KL I+Y G + ++R P+V V EL+D + Sbjct: 685 PACGERDLRSQDRQLMLDAIVAATEKLVITYSGADERTGAQRPPAVPVGELLDAL----- 739 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAR-EWLPAASQAGKA--- 816 D+ A V+ + H PFD + G + P A +A Sbjct: 740 ---DDTATTATGGA-VRDLVLVRHPLQPFDARTLTAGALGRVGPFTFDPVALGGARALAG 795 Query: 817 ---HSEFVQPLPFTLPETVP----LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 + + P P P+ P L + HP + F + RL V E + PD P Sbjct: 796 PRRPAGRLVPAPLPAPDRPPADVELAEVIEVLTHPAKGFLRRRLDVAVPFEQDDPPDDLP 855 Query: 870 FILEGLSRYQINQQLLN----ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 L+ L + + ++L + EQ+ + +RR G LP A G E ++++ Sbjct: 856 VDLDALQEWGVGDRILRDRLAGVPEQECRQAEWRR----GVLPPAALGGRALERVLRDVR 911 Query: 926 QLADRVIACR-QPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLE 983 L DR R P ++E+ + +G ++ G + V GL+ S L+ +Q WL Sbjct: 912 PLVDRTATLRAAPRHTVEVSVPLPDGRRLRGTVGGVHGIGLVTVSYSKLAPRARLQSWLA 971 Query: 984 HLVYCASGGN---GESRLFLRKDGEWRFPPLAA---EQALHYLSQLIEGYREGMSAPLLV 1037 L AS + + + G + LAA E+A L L+ Y EG+ APL + Sbjct: 972 FLALTASDPALAWTAAAVGRAERGRPQCATLAALPGERARELLIDLVGLYEEGLRAPLPL 1031 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQL 1097 ++G + DA+ M D + Q A T Y GE D R+W + Sbjct: 1032 PLKTG----EKYADARRRGMDHDKAQDQAAATWTGGKYP------GERQDAANMRVWGRD 1081 Query: 1098 TP 1099 P Sbjct: 1082 AP 1083 >UniRef50_D0L8X4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8X4_GORB4 Length = 1151 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 281/1021 (27%), Positives = 441/1021 (43%), Gaps = 126/1021 (12%) Query: 26 LDDPFEPEMILVQSTGMAQWLQMTLSQKFG--------IAANIDFPLPASFIWDMFVRVL 77 LDDP PE++ V + G+ +WLQ L+ + G IAANI+F PA+ + +L Sbjct: 25 LDDPMSPEIVAVPAAGVERWLQQHLATRIGCGTTRSDGIAANIEFLSPAALADAVTAALL 84 Query: 78 PEIPKESAFNK----------------QSMSWKLMTLLPQLLEREDFTLL-RHYLTDDSD 120 E N + W ++ +L ++ + ++ RH D Sbjct: 85 TEAAGTDTANAGHEHSAGGGADDPWRPSVLVWSVLRVLDDRIDDPELAMIARHVGGGDET 144 Query: 121 KRKL---FQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQAWQAPLWKALV 173 ++ F + ADLF++Y RP LA W G +G +G +WQ W+AL Sbjct: 145 SPRIGRRFATARHLADLFERYGRARPTMLAAWAQGRDEDGAGGHIGADLSWQPGFWRAL- 203 Query: 174 EYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH 233 ++G+P H A L A LP R+ + G + + + L AL +H Sbjct: 204 --RAEVGRP--HPAEALGDLCARLR-ANPAVTDLPERLSVFGPTRVTEEFRALLVALARH 258 Query: 234 IEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQ 293 ++H+ +P W I DR LP Sbjct: 259 RDVHVFLPHPSPVLWEAISSSTVAGDRPEETHSPRRADRRLPA----------------- 301 Query: 294 DVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGV 353 + +PLLAS L RD + +LE + A VDV +++L + + + L AG+ Sbjct: 302 -IAHPLLAS---LSRD----VQELELRLQPHADVDVHHESVLGHRPTLLGALH----AGL 349 Query: 354 NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA 413 ++ ++ P DSS+ H CH P+R+VEVL DRLL + +DPTL PRD+++M Sbjct: 350 CADDL-----RQQAVPADSSVEIHACHGPERQVEVLRDRLLHLFADDPTLQPRDVLIMCP 404 Query: 414 DIDSYSPFIQAVFGSA----PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSED 469 D+++++P I+ FG A PA L ++DR RQ +P+L+ +++ L R + + Sbjct: 405 DVETFAPLIRGAFGQAGLAHPA-FALRVRLADRGVRQVNPILDVVGAVVELAAGRVSAGE 463 Query: 470 VLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLT 529 V LL + + RFD+T++ L +R W+ S +RWGI L GQ T+ GL Sbjct: 464 VADLLGLEPVRTRFDLTDDDLDRVRDWLAGSNVRWGIGLGQRARFGLDGFGQGTFEAGLD 523 Query: 530 RMLLGYAMESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588 R+LLG E GEW + LP +L G A L +L+ L + P + W Sbjct: 524 RILLGVVAEEQDGEWLGTALPLAGVESTEIDLAGRFAEFLARLSTTLEALTETGPRDRW- 582 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAI--IAEGLGAQYGDAVP----LSLLRDELA 642 RD L DA T + Q+ QAI I + G + G A P L+ +RD +A Sbjct: 583 ---RDALTGVV--DALTATSPGDDWQRAQAIRLITDAFG-ESGPAEPTVLRLADVRDLMA 636 Query: 643 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 L F G + +CT++PMRS+P +V+ LLG++ V+PR G DL+ P Sbjct: 637 ALLAGRPTRSNFRTGELTVCTMVPMRSVPHRVIVLLGIDGEVFPRVQRIDGDDLLGVDPL 696 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 G+R+ RD+DR FL+A+ +A + L + Y G P+V+V EL D + Sbjct: 697 VGERNPRDEDRQCFLDAICAATETLLVFYSGADPVSGRRIPPAVVVSELADTLRTLI--- 753 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ------SYAREWLPAASQAGKA 816 D A + + V+ H LH FD +N+ G S+ E L A Sbjct: 754 -DPARSPAAAVDPVRHH--TLHG---FDQRNFLDGGVAGVAGPFSHDAELLDGARAMRTP 807 Query: 817 HSEFVQPLPFTLP--------ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTE 868 + V ++P + L+ L F P+ + + RL +S D Sbjct: 808 ATTAVPMAARSVPVDDDPDEAGDIDLDLLIEFHTDPIAGYLRQRLGARIPRAESAHDDQL 867 Query: 869 PFILEGLSRYQINQQLL-----NALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQE 923 L+ L + I ++ L A +E+ A L R G LP AFG + Sbjct: 868 DVDLDPLESWGIGERFLKRMLGGASIEECQAAELRR-----GTLPPFAFGTRTLASISTV 922 Query: 924 MQQLADRVIACRQPGQSM-EIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLW 981 Q L V R +M ++D+ +G ++ G +P V + S L Q + W Sbjct: 923 AQNLYRNVAVLRDGSPAMLDVDVTLPDGRRLYGTVPNVFGQRFVTATYSRLKAKQQLTEW 982 Query: 982 L 982 + Sbjct: 983 I 983 >UniRef50_C8SXN2 Exodeoxyribonuclease subunit V gamma (Fragment) n=4 Tax=Enterobacteriaceae RepID=C8SXN2_KLEPR Length = 170 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 120/167 (71%), Positives = 141/167 (84%) Query: 956 LPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQ 1015 L QVQPDGLLRWRPSLLSV+QGMQLWLEHLVYCASGG GESRLF+RK+GEWRFP LA + Sbjct: 1 LQQVQPDGLLRWRPSLLSVSQGMQLWLEHLVYCASGGTGESRLFVRKEGEWRFPALAPAE 60 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A YL++L++GY GMS PLL+LPESGGAWLK CYDA+ D +L D+ T QKAR+KFLQ Y Sbjct: 61 AQAYLNELVDGYLLGMSQPLLLLPESGGAWLKACYDAEKDVILMDEETQQKARSKFLQTY 120 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 EGNM+V GEG DIWYQRLWR L P E I+ Q+QR+LLPL+R+++S Sbjct: 121 EGNMVVSGEGADIWYQRLWRSLEPAHYEEIIAQTQRYLLPLYRYHRS 167 >UniRef50_Q6FF17 Exonuclease V, gamma chain n=3 Tax=Acinetobacter RepID=Q6FF17_ACIAD Length = 1221 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 283/1164 (24%), Positives = 520/1164 (44%), Gaps = 162/1164 (13%) Query: 2 LRVYHSNRLDVL-EALMEFIVERERLDDPFE---PEMILVQSTGMAQWLQMTLSQKFGIA 57 + V S R+DVL + + + + + R PF+ + +V S + QWL LS+ GI Sbjct: 3 IHVIQSQRIDVLLQGVWQSVHQPTR--QPFDVLATQHFIVPSPAVEQWLTEKLSELQGIT 60 Query: 58 ANIDFPLPA-SFIWDMFVRVLPEIP---KESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 AN F F W + +VL E +++ + + W++ L ++ + + + Sbjct: 61 ANYLFHQRIRGFQWYAYQQVLSEHKDDVRKANIPRLILKWRVYQALYDFIQPDQILITQD 120 Query: 114 Y--------LTDDSDK------------RKLFQLSSKAADLFDQYLVYR----------- 142 + + D +D+ + L+ ++ + + LF Y++YR Sbjct: 121 HPAYSIIARIYDSADRLENGFEKQLKKQKMLYWVAEQVSQLFSNYMIYRGHCQKNCAGNC 180 Query: 143 ---PDWLAQWETGH-------LVEG--------LGEAQ---AWQAPLWKALVEYTHQLGQ 181 +WL+ W +V+G L +AQ AWQ LW Y HQ Sbjct: 181 GCASNWLSAWGENRELDIEQLIVQGNKEISAFQLQQAQELEAWQRWLWH---RYFHQDFL 237 Query: 182 PRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 + +L+ + +E ++ LP ++ + + LPP LQ L+ LG+++++ +L Sbjct: 238 DIQNIDDLFWQVLEQPQTRDIALKRLPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILHY 297 Query: 242 NPCRYYWGDIKDPAYLAKLLTRQRRHSFEDR----ELPLFRDSENAGQLFNSDGEQDVGN 297 NP + YW D DP + + R ++ E ++ + + E FN++ + + Sbjct: 298 NPSQEYWADSVDPLWKQRYDVRVKQRFIEKNPAATDVDIAQFFEQFTLHFNAEARES-RH 356 Query: 298 PLLASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDILELENRAVAGVN 354 PLL GK RD+ LL++L + +E +DAFVD PD LL +QSDIL L Sbjct: 357 PLLTRLGKQARDHFSLLANLSTGEEGRWVDAFVDDFPDTLLGQVQSDILNLAEPQAG--- 413 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT---PRDIIVM 411 + L+P D SI FHVCHS R++EVL D+L+ L ++ + P DI+V+ Sbjct: 414 ---------RYTLEPSDESIRFHVCHSSLRQLEVLRDQLIHWLSQNDDASVRRPNDILVV 464 Query: 412 VADIDSYSPFIQAVFGSAPADR--YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSED 469 V +I P I++VF + P+D +LP IS A + ++L R +D Sbjct: 465 VPNIKEIEPLIRSVFPATPSDDGVFLPIKISGVVQLDVMNAWRAVLGRMTLLQGRLSYDD 524 Query: 470 VLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG---QHTWRF 526 L +P +D+ + ++ + + +G + G D ++++ L A +++++F Sbjct: 525 FADWLSLPATQVCYDLEDSQIKRMLALLAGAGFKRGFDIHHLQQ-SLSAEDHDDRYSFKF 583 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG-LAQER--- 582 L R+ LG A+ +Q VL Y + EL+G L + ++ R LA E+ Sbjct: 584 ALDRLALGIAIPE-HTLFQGVLSYSGVTPDDFELIGKLIQIYQDIDARRNWVLAHEQGTQ 642 Query: 583 -PLEEWLPVC-RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD---------A 631 +E+WL + +D++ + A +I++Q + + L + Y D A Sbjct: 643 HSVEDWLKILMQDVIEFEQAGVVALKTAREIIKKQERMVT---LASFYADKDAHTLRQIA 699 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 +PL + DE+ QR + + +Q G + + +R +P+++V +L ++ G +P + + Sbjct: 700 LPLPYILDEI-QRTLEHQSAQAEPTGQITFSQIGQIRPLPYRLVVMLNLDTGRFPNRDSH 758 Query: 692 LGFDLM-SQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 + FDLM + + + GDRSR +DD+ FL+A++ AQQ L++ Y G + D R PS ++QE Sbjct: 759 IPFDLMDALRQQLGDRSRLEDDQGAFLDAVLLAQQALWLFYNGFDLNDGEVREPSSILQE 818 Query: 751 LIDYIGQSHYLPGDEALNCDESEARVKAH---------------LTCLHTRMPFDPQNYQ 795 D++ P ++ ++S ++ L C+H PFDP + Sbjct: 819 FRDHLALI-VAPAEQIAKHEDSNLTIQMQQQQFKLLDIPNQLWPLYCVHPLQPFDPLGFG 877 Query: 796 --PGERQSYAREWLPAASQAGKAHSEFVQP---LPFTLP--ETVPLETLQRFW----AHP 844 P ++ Y +W A +A S +QP + +T P E L++ Q W P Sbjct: 878 NLPVAKR-YQDQWYQVAQSIQEA-SAILQPWVNMVYTQPQQELRVLDSQQ--WMADVTFP 933 Query: 845 VRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAA 904 R + + L V + + EP L+GL RY I N L +Q E+ Sbjct: 934 ARLYLK-NLGVENLAMTTLLDQNEPLFLDGLGRYAIR----NFLQKQ---EQTTTPDTLL 985 Query: 905 GDLPYGAFGEIFWETQCQEMQQLADRV--IACRQPGQSMEIDLACNGVQITGWLPQVQPD 962 LP G W+ E ++L +R+ + + + + + +P+ Sbjct: 986 DQLPVGKIKHSAWQQSLAEQERLLERLHHYTTQPTATTHHVWRVSKTLHLNIIMPEHDVQ 1045 Query: 963 GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES-----RLFLRKDGEWRFPPLAAEQAL 1017 + S + ++WLE+L++ + G++ R+ + D +++ QA Sbjct: 1046 DWVSLEASSARAKRIAKVWLEYLLWLSYLNEGDAGQRRRRIVVFSDQTVICEGVSSIQAR 1105 Query: 1018 HYLSQLIEGYREGMSAPLLVLPES 1041 YL+Q ++ ++ + P +VLP + Sbjct: 1106 DYLTQWLKMWQVASTQP-VVLPAA 1128 >UniRef50_A6W6P1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W6P1_KINRD Length = 1158 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 226/821 (27%), Positives = 370/821 (45%), Gaps = 98/821 (11%) Query: 368 DPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG 427 DP D S+ H CH R+VEVL + +L +L+ DPTL PRD++V D+++++P + A F Sbjct: 368 DPGDRSVQVHACHGRARQVEVLREVVLGLLDADPTLQPRDVLVACPDVETFAPLVSAAFA 427 Query: 428 --SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDI 485 S P L ++DR A +++P+L + LL L SR + +VL L + RFD+ Sbjct: 428 TDSHPGG-GLRVQVADRSALRTNPLLGLAVRLLGLAQSRAGATEVLDLAAAAPVRRRFDL 486 Query: 486 TEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA----- 540 +E L LR+W +G+ WG+ + +L + Q TWR GL R+L+G A+ A Sbjct: 487 DDEDLEQLREWTVAAGVHWGLSARHRGAWQLGSLDQGTWRAGLDRLLVGVAVGGAVEDDL 546 Query: 541 ------QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 G +V+P + +L G A LL +L+ L + W C + Sbjct: 547 VGRTGEDGLLGAVVPLADVESSRIDLAGRFAELLDRLDAAVTRLQGRHGVAAW---CDTL 603 Query: 595 LNAFF-LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA-VPLSLLRDELAQRLDQERISQ 652 L+A L D E A + + + + + A+ G A V L+ + +++R Sbjct: 604 LDAVLDLADTAPEDAWQVAQLRRELGVVAHDAARAGTARVGLTDVAATISERFAAHPQRA 663 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 F G + +CT P+R++P +VVCLLGM+DG +PR P D++++ P GDR R +D Sbjct: 664 NFRTGALTVCTPAPVRAVPHRVVCLLGMDDGAFPRAGGPDADDVLARDPHVGDRDPRGED 723 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 R + L+ + SA+ L ++Y GR ++ + P+V V E++D + +H PG Sbjct: 724 RQVLLDLVRSARDALVVTYSGRDVRTGAVLPPAVPVGEVLDALEAAH--PG--------- 772 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQS---YAREWLPAASQAGKAHSEFVQPLPF--- 826 V+A + H P D +N+ PG + ++ + A S A H E P P Sbjct: 773 ---VRARIEVHHPLQPTDRRNFTPGALGTDGPFSHDGT-AFSGADAGHRE---PAPVPPF 825 Query: 827 -------TLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQ 879 + L+TL +F HP R F + RL V T + E D P L+ L ++ Sbjct: 826 LPAALPPAPAADLDLDTLVQFLQHPARGFLRQRLDVASATREEEPDDALPVQLDALQKWA 885 Query: 880 INQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC----- 934 + + L A + A + R A G LP G G +E+ + D + Sbjct: 886 VGDRALAARLRGVAAPEVVRLEGARGGLPPGPLGVAV----LREVGPVVDAIAGVAAEFD 941 Query: 935 RQPGQS--MEIDLACNGV---QITGWLPQVQP---DGLLRWRPSLLSV------AQGMQL 980 P +S +E+DL GV ++TG + V+P G ++ +V Q ++ Sbjct: 942 TAPPRSVDVELDLDVPGVGQLRLTGNVRGVRPVRGGGRATGEVAVTTVYSRIKGKQTLRA 1001 Query: 981 WLEHLVYCASGGNGESRLFL--RKD----GEWRFPPLAAEQALHYLSQLIEGYREGMSAP 1034 W+E L A+ E R L R D G P+ ++ A L L+E G+ P Sbjct: 1002 WVELLALSAAHPGTEFRTVLVGRGDRGSTGLLTLGPVRSDAARDLLVDLLELRAVGLRFP 1061 Query: 1035 LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY--------EGNMMVRGEGD 1086 L + ++ AW + + + D+ L+ AR + + E N+ V G Sbjct: 1062 LPLPVDTAAAWAQEAWRGRA-----PDACLRAARRAWTSDFSFDKEDRQEENVTVWGAER 1116 Query: 1087 DIWYQRLWRQLT------PETMEAIVEQSQRFLLPLFRFNQ 1121 + + W T P T E +V + LL + R ++ Sbjct: 1117 PVEHLVRWEPPTTLPPGVPTTFEGLVRRVWEPLLGVQRMDE 1157 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 112/291 (38%), Gaps = 49/291 (16%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKF----- 54 ML V+ S + L AL + + DPF P+++ V + G +W+ LS Sbjct: 1 MLHVHRSESANTLVTALAGLLRDPAPGADPFAPDVLAVGARGTERWIAQRLSHHLGAGDP 60 Query: 55 -------GIAANIDFPLPASFIWDMFVRVLPEIPKESA-----FNKQSMSWKLMTLLPQL 102 GI A +D PA + + L + + S++W ++ +L ++ Sbjct: 61 AAGGGDDGICARVDTSSPAHLLDGVLAAALERTRPGTGDAVERWAPSSLTWDVLEVLDEI 120 Query: 103 LE---------REDFTLLRHYL-------------TDDSDKRKLFQLSSKAADLFDQYLV 140 R +F LLRH+L + + +++ A LF +Y Sbjct: 121 APADGGPAPDGRPEFALLRHHLRHHPGDDGPGGPGGPGTPPVRRTAAAARVAGLFARYGA 180 Query: 141 YRPDWLAQWETGHLVEGLGEAQA---WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETL 197 RP LA W G A WQ +++A+ E ++G P A L L Sbjct: 181 ARPQLLADWAAGRDDAPGAPLPADLRWQPEVFRAVRE---RVGLP--APAELLDDACAAL 235 Query: 198 ESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYW 248 + L R+ + ++ L L+ L AL +H E+HLL +P W Sbjct: 236 RTDPAL-SDLGPRLAVFLVTRLATSRLRVLSALAEHREVHLLLQHPSPALW 285 >UniRef50_A5GU99 Exodeoxyribonuclease V gamma chain n=1 Tax=Synechococcus sp. RCC307 RepID=A5GU99_SYNR3 Length = 1071 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 292/1088 (26%), Positives = 461/1088 (42%), Gaps = 146/1088 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLR+ SN ++ L + ++R + +P P+ +L+ + M++WL + LS++ GI A I Sbjct: 1 MLRLISSNSIEDLATALASELDRHKPANPLTPQRVLISTNAMSRWLALALSERIGICAGI 60 Query: 61 DFPLPASFIWDMFVRVLPEIP--KESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL--- 115 +F + + + + +P ++ + W+L L+P L + E + L+ Sbjct: 61 EFDFAGRHLRQLILELDGRLPAGHRDPWDPSQLRWQLAQLIPALPQTELWEPLQQLWHQG 120 Query: 116 ---TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQAWQAPL 168 D+ + QL + +D DQY +YRP + +W G V+G L Q WQ L Sbjct: 121 PQQQDNGLDTQRLQLILQLSDTLDQYGLYRPQMVRRWLNGESVDGSHAPLAAHQQWQPAL 180 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLE-SATTCPPGLPSRVFICGISALPPVY--LQ 225 + L + G P H A +R + LE S P P VF G+S+LPP L Sbjct: 181 LRELAQRLEPSGIP--HPA---ERLLHALEQSRQRSDPHEPLHVF--GLSSLPPALWKLL 233 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 A +A + + L +P WG + P++ H D L R + Sbjct: 234 AQRASSRDSPVLLYQLSPSLDPWGSLP-PSH----------HEEGDALDRLER------R 276 Query: 286 LFNSDGEQDVGNPLLASWGKLGRDYIYLL----SDLESS---QELDAFVDVTPDNLLHNI 338 L + G+PLLAS G+ RD+ + L +DL+ Q+ A + LL + Sbjct: 277 LLHQ------GHPLLASLGRTQRDFHWQLELIAADLQEQFERQQRPAPLCPEEAGLLQQL 330 Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHV--CHSPQREVEVLHDRLLAM 396 ++D+L R IE PL + + V CH +R+VE H+ LL + Sbjct: 331 KADLLVGRPRGEGLPGIEP--------PLKLQRNQLNLEVLACHGDRRQVEAAHEALLRL 382 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVF---GSAPADRYLPYAISDRRARQSHPVLEA 453 + DP++ PR I+VM D+ ++P + AVF G + R+LP ++DR RQ +P ++ Sbjct: 383 MAGDPSIEPRHILVMTPDVARFTPLVLAVFERPGRSSDPRHLPVRVTDRTLRQRNPRVDL 442 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 LL+L SR +DVL +L +P LA ++ R+ ++++GI WG D D+ + Sbjct: 443 VFRLLALASSRLSRDDVLDVLLLPELAEHLELGGLTQPQWRELLDQAGICWGRDGDHRQS 502 Query: 514 LELPATGQHTWRFGLTRMLL------GYA-MESAQGEWQSVLPYDESSGLIAELVG---H 563 PA +WR+GL R+LL G+ E+A GEW + ++S +++ Sbjct: 503 WGYPAGDAFSWRWGLDRLLLGLELSDGFPEQEAASGEWGGLAACNQSLATANDVLALHDA 562 Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEG 623 + L QL + L+ P E W + D E A + E E Sbjct: 563 CSRLFEQL----QALSGPLPAERWNEQIGSAIQQLSGGDDEGWQAPEVYELLTPLRDPEA 618 Query: 624 LGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDG 683 G A + LL + AQ+ Q R ++G V++ L PMRSIP +VV LLGM++ Sbjct: 619 SGLALDRAAVVRLLEEAEAQQ--QGRYG--HVSGAVSLSALEPMRSIPHRVVVLLGMDEQ 674 Query: 684 VYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERF 743 PR+ G+DLM Q+P RGDR RR +DR + LEAL + +Y + ER Sbjct: 675 RLPRRDQRPGYDLMLQRPWRGDRDRRQEDRAILLEALQACSDHWIATYNAIDPRSGEERN 734 Query: 744 PSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYA 803 P+ + +L L C E R +A + P R+ Sbjct: 735 PAAPLSDL---------------LRCLERSYRTEAGEPITTWVLQQQPPLPPLTAREVVG 779 Query: 804 REWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 W Q P E LE LQ++ P RA Q R D E Sbjct: 780 APW------------PMDQRWPVDECEPASLEELQQWLRDPARALLQAHGIHPHRRGD-E 826 Query: 864 IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRA---AGDLPYGAFGEIFWETQ 920 D E +GL R+ + Q+LLN E+ +A + ++ A G LP G + + Sbjct: 827 SSDPEESAPDGLQRWTLGQRLLNLGSERLEANQWPQQRDALARRGHLPPGPAAIVSSDQP 886 Query: 921 CQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQL 980 Q L + A Q + L N R++P L + Sbjct: 887 WQRCHALLAKQ-AELQDADGEAVVLMSNS----------------RFKPKRL-----LDG 924 Query: 981 WLEHLVYCASGGNGESRLFL---RKDGE-----WRFPPLAAEQALHYLSQLIEGYREGMS 1032 WLEHL A+ + L L + GE W P + A+QA ++ + E + Sbjct: 925 WLEHL--WANAERPQQTLLLGPMEQKGEERAAVWTLPAVEAQQAKAWIDDWQQWREEALQ 982 Query: 1033 APLLVLPE 1040 P+ +PE Sbjct: 983 RPIAWIPE 990 >UniRef50_A3ETY6 Putative exodeoxyribonuclease V, gamma subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY6_9BACT Length = 1095 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 209/767 (27%), Positives = 342/767 (44%), Gaps = 68/767 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML ++ SNR++ L + F V R+ P+ P IL Q+ + +WL L+ G+A NI Sbjct: 1 MLVLHVSNRMERLTDQL-FSVIRDDPPPPWSPVTILPQNPTIGRWLTYRLADVQGVAMNI 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 PLP ++I D + F + ++ +L+ +LP L + F+ RHYL + Sbjct: 60 ATPLPGAWIRDFLETGFGRSGQVVHFERNALFLRLLRILPALRDDPVFSEFRHYLGEGDP 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 R+L LS + ++LFD+ ++YRP+WL WE E +W A LW+ + H Sbjct: 120 SRRLVSLSDELSELFDRAMLYRPEWLTSWED------FPEDLSWPAVLWRNVAGKDHPA- 172 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI--EIHL 238 H A L F + LP R+F+ G+S + P L +G+ ++H Sbjct: 173 ----HFARLLHEFHSLPVLDSLWQEALPDRLFLFGLSGIAPATLDIFFRIGRETSCQVHF 228 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 F NP YW D +++ + E+ P F D G+P Sbjct: 229 FFLNPTDRYWAD---------MVSLRSWEHMEEELKPYF----------------DPGHP 263 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 LLA G+ RD L LE + P++ + +I+ E E Sbjct: 264 LLAFLGRTARD---LHKKLEEG--------IRPEDPVADIRECFEEPEGTTTLSRLQRSL 312 Query: 359 SRSDNKRP-LDPLDSSITFHVCHSPQ--REVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 R D L+ L + + SP REVE L D LL P L D++++ + Sbjct: 313 FRMDAAAEFLERLPDDGSLRIVSSPSVVREVETLRDFLLDRFLAQPDLRLEDVVILAPET 372 Query: 416 DSYSPFIQAVFGSA-----PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 + Y+ I+AVF + + L +SDR ++ + + + LL LP V Sbjct: 373 ELYAGTIRAVFEATGESGRAGEPVLSVTVSDRPPFEAA-LADVLVGLLRLPVFPLTLSFV 431 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD-DNVRELELPATGQHTWRFGLT 529 LL + RF + + L + + +G RWG+D D R+ HT + ++ Sbjct: 432 QRLLSFQTVLDRFSLDRKMASELLEALARAGFRWGVDKQDRTRD----EPEDHTLDWAVS 487 Query: 530 RMLLGYAME-SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588 R+L GY QG V P+ E G L LL WR L+ L W Sbjct: 488 RILEGYCTGIEEQGLVFPVSPFVLPDDPQGEKAGILFRLLDLFRSWRDRLSGRHALSAWA 547 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 +L+ FF+ D + + + + Q + + + + D + ++ + L++R+ + Sbjct: 548 ESVSALLSDFFVLDPDRDRDLFALGQSLRELCRDIHDVEDMDCM---MVTEMLSRRIFRT 604 Query: 649 RISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSR 708 RF +G + ++P+RSIPF++VCLLGM + +PR FD + + P+ DRS Sbjct: 605 TWRDRFFSGGITFGRMVPLRSIPFRIVCLLGMGESAFPRNDVAQSFDFLRESPRPLDRSV 664 Query: 709 RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI 755 R+DD +LFLE L+SA+ L+ISY+G D + PS V++L++ + Sbjct: 665 REDDLHLFLEILLSARSSLWISYVGGEGGDGTTGLPSPPVRQLLETL 711 >UniRef50_B2I2P5 Exonuclease V gamma subunit n=14 Tax=Acinetobacter RepID=B2I2P5_ACIBC Length = 1211 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 270/1108 (24%), Positives = 488/1108 (44%), Gaps = 145/1108 (13%) Query: 30 FEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPA-SFIWDMFVRVL---PEIPKESA 85 + + +V S + QWL L+++ G++AN F F W + +VL E +++ Sbjct: 33 LKAQHFIVPSPAIEQWLIQKLAEQQGMSANYQFHQRVRGFQWYAYQQVLTAHKEQVRKAN 92 Query: 86 FNKQSMSWKLMTLLPQLLEREDFTL--------LRHYLTDDSDK------------RKLF 125 + W++ L + ++ + ++ + + D +D+ + L+ Sbjct: 93 IPRLIFKWRVHQALQEFIQPDVMSIDSSHPLHSIVQRIYDSADRLEQGIEKQLKKQKMLY 152 Query: 126 QLSSKAADLFDQYLVYR--------------PDWLAQWETGH------------------ 153 ++ + ADLF Y+VYR +WLA W G Sbjct: 153 WVAEQVADLFSNYMVYRGQCQRGCENMCTCPNNWLAAWGQGRSLDIEKYIAHKDKEVSAF 212 Query: 154 LVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFI 213 ++ E + WQ LW+ ++ H+ L+ + +E E LP ++ I Sbjct: 213 TLQQTQELERWQRWLWQ---QHFHEDFMQMQQIDELFWQELEHPERQKKALSRLPQQIVI 269 Query: 214 CGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAK--LLTRQR----RH 267 + LPP LQ L+ LG++I++ +L NP + YW D DP + + L ++R Sbjct: 270 FTLLDLPPSQLQFLRRLGQYIDVLILHYNPSQEYWADSVDPLWKQRYDLGVKERFIAKNP 329 Query: 268 SFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---LD 324 D E+ F + FN++ + +PLL GK RD+ LLS+L + +E +D Sbjct: 330 QATDAEIADFFNKFTLN--FNAEARES-RHPLLTRLGKQARDHFSLLSNLSTGEEGKWVD 386 Query: 325 AFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQR 384 AFVD P++LL +QSDIL L +E ++ + L P D SI HVCHS R Sbjct: 387 AFVDDFPESLLGKVQSDILHL---------VEPQAK---QYELAPNDDSIQIHVCHSTLR 434 Query: 385 EVEVLHDRLLAML---EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR--YLPYAI 439 ++EVL ++L+ L E P P DI+V+V ++ P I++VF + ++ +LP I Sbjct: 435 QLEVLKEQLIGWLAKPHEQPR-RPNDILVLVPNLAEVEPLIRSVFPATATEQGVHLPVKI 493 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 + + + A I + L RF ++ L + R+ + + + + + Sbjct: 494 AGIASLDALNAWRAVIGRIHLMQGRFSFDEFADWLGLHATQQRYALEYAQVERILNLLAD 553 Query: 500 SGIRWGIDDDNVRELELPATG--QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLI 557 +G + G+D ++++ +++++F L R+ LG A+ + VL Y + Sbjct: 554 AGFKRGLDAEHLKRSLCDGDDDYRYSFKFALERLALGIAI-PEHATFNQVLSYAKVQPGD 612 Query: 558 AELVGHLASLLMQLNIWRRGL-----AQERPLEEWL-PVCRDMLNAFFLPDAETEAAMTL 611 EL+G L + LN R L + +E WL + +D++ + A + Sbjct: 613 FELIGTLIQIYQDLNERRDWLIMHEQKKSHTVEYWLQTLSQDIIEFEQAGVTALKTAREI 672 Query: 612 IEQQWQAIIAEGLGAQYGDA---------VPLSLLRDELAQRLDQERISQRFLAGPVNIC 662 +++Q + + L + Y + +PL + DE+ QR + + +Q G + Sbjct: 673 VKKQERMLT---LASYYAETETGTLRKITLPLPYILDEI-QRTLENQTAQAEPTGQITFA 728 Query: 663 TLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ-KPKRGDRSRRDDDRYLFLEALI 721 + +R +P++++ +L ++ G +P + + FDLM + + GDRSR +DD+ FL+AL+ Sbjct: 729 QIGQIRPLPYRLIVMLNLDAGQFPNRDTHVPFDLMDALRQQLGDRSRLEDDQGAFLDALL 788 Query: 722 SAQQKLYISYIGRSIQDNSERFPSVLVQELIDY----IGQSHYLPGDEALNCDESEARVK 777 AQ+ L++ Y G + D R PS ++QE ++ + P E + E ++K Sbjct: 789 LAQENLWLFYNGFDVNDGEVRDPSSILQEFREHLALIVKPEPNAPDREVIEGIEIPTQLK 848 Query: 778 AHLTCLHTRMPFDPQNYQPGERQ-SYAREWLPAASQAGKAHSEFVQP-----LPFTLPET 831 L LH PFDP+ + R Y W A Q +A S ++P P +P+ Sbjct: 849 -QLYHLHYLQPFDPKGFMAENRYIRYQDHWFNVAMQIQQA-SGVLKPWANISYPLEIPDM 906 Query: 832 VPLETLQRFWAH----PVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 + L++ Q W P R + + L V S + EP +L+GL RY I + L Sbjct: 907 LVLDSHQ--WIQDVTFPARLYLKT-LGVENLGNVSVLDQNEPLLLDGLGRYTI-RHFLQQ 962 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC--QEMQQLADRVIACRQPGQSMEIDL 945 +Q E L + G + Y A+ + +E +C + + A V Q + L Sbjct: 963 NEQQAQPEVLLDQL-PVGKVQYSAWQQGIFEQECLLERLHHYAPAVTQTTQRVWRIAKQL 1021 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA-----SGGNGESRLFL 1000 N IT +P+ + + S + ++WLE+L++ A S G R+ + Sbjct: 1022 HMN---IT--VPKSETQDWVSMEASSARAKRRAKVWLEYLLWLAYLNEGSAGTERRRIVV 1076 Query: 1001 RKDGEWRFPPLAAEQALHYLSQLIEGYR 1028 D +++EQA YL + +R Sbjct: 1077 FSDQTVICKGISSEQARQYLQPWFKIWR 1104 >UniRef50_D0SSR5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SSR5_ACILW Length = 1234 Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 306/1197 (25%), Positives = 495/1197 (41%), Gaps = 213/1197 (17%) Query: 2 LRVYHSNRLDVL-EALMEFIVERERLDDPFE---PEMILVQSTGMAQWLQMTLSQKFGIA 57 + V S R+DVL ++++ + + R +PFE +V S + WL +++K GI+ Sbjct: 3 IHVIQSQRIDVLLDSMLRIVNQTAR--NPFEVLQTRHFIVPSPAVETWLTQKIAEKKGIS 60 Query: 58 ANIDFPLPA-SFIWDMFVRVLP-----EIPKESAFNKQSMSWKLMTLLPQLLEREDFTL- 110 AN F +F W + VL E +E+ + + W++ L + + E L Sbjct: 61 ANTQFHHRIRAFQWTSYQWVLNAPKEVEQVREANIPRIIIKWRVFQALRKCILPEQIPLD 120 Query: 111 -------LRHYLTDDSDKRK------------LFQLSSKAADLFDQYLVYR--------- 142 + + D +D+ + L+ ++ + + LF Y+ YR Sbjct: 121 VDHPLYSIVKRIYDSADRLEQGTEKQLKKQSMLYWVAEQVSRLFSHYMDYRGYCARNCPP 180 Query: 143 ------PDWLAQW-----------------ETGHLVEGLG-------EAQAWQAPLWKAL 172 +WL W E GH ++ E +AWQ LW+ + Sbjct: 181 NNCSCPSNWLEAWGQDIALDIEQMIYSPKDENGHEMQVADFVKIQARELEAWQRWLWQHV 240 Query: 173 VE--YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL 230 + Y L R LY +E E+ LP+++ + + LPP L L+ L Sbjct: 241 FQDDYAKILEIER-----LYWDRLENAETRAQALKRLPAQIVVFSLLELPPSQLDFLRRL 295 Query: 231 GKHIEIHLLFTNPCRYYWGDIKDPAYLAKL-------------LTRQRRHSFEDRELPLF 277 ++I+I++ NP + YW D DP + A+ TRQR+ + D E+ F Sbjct: 296 SQYIDIYIFHFNPSQEYWADSVDPDWKARFDLQREERFIQRFEKTRQRKPN--DAEIKDF 353 Query: 278 RDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNL 334 R QL + +++ +PLL +GK RD+ LLS L S +E D FVD D L Sbjct: 354 R----IKQLNFNAEDRESRHPLLTRFGKQARDHFSLLSKLSSGEEGLWADVFVDEYQDRL 409 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRL- 393 L IQSDIL L ++ L P D S+ HVCHS R++EVL ++L Sbjct: 410 LAKIQSDILYL------------LEPEQHQYALSPDDDSVQIHVCHSSLRQLEVLKEQLI 457 Query: 394 --LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR------------YLPYAI 439 LA E+ P DI+V+ + P I++VF P +R YLP I Sbjct: 458 HWLAQGNEEAPRQPSDILVLTPSLKELEPAIRSVFAPPPRERETGSKRLQKDNLYLPIQI 517 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 + A + + RF ED L + R+ + + + Q + + Sbjct: 518 AGVSRLDVSNAWRAVLGRIQWVRRRFSIEDFADWLSLNATQQRYGLDYSQVERMLQLLTD 577 Query: 500 SGIRWGIDDDNVRELELPATGQH---TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGL 556 +G + G+D ++++ L A + +++F L R+ LG A+ +Q L Y + Sbjct: 578 AGFKRGLDQQHLQQ-SLSAGDEDYRFSFKFALDRLALGLAI-PEHTLFQDTLSYAKVLTS 635 Query: 557 IAELVGHLASLLMQLNIWRRGL-----AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL 611 L+ L + L R L Q P++ WL R LN F DA E+ T+ Sbjct: 636 DFPLISTLIRIYQDLVERRDWLTLHETGQRTPVKTWLEYLRADLNEF--RDAGVESLKTV 693 Query: 612 IEQQWQAIIAEGLG----AQYGD-------------AVPLSLLRDELAQRLDQERISQRF 654 E II + + A Y D ++PL + +E+ L+ + + Q Sbjct: 694 AE-----IIDKQMRMLTLADYHDQDDPHASQELVALSLPLPYVLEEIQNTLEMQ-LDQAE 747 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDR 713 G + + +R +P+K+V +L ++ G +P + + FDLM S KP+ GDRSR DD++ Sbjct: 748 PTGQITFSQIGQIRPLPYKLVVMLNLDSGKFPSRNQQVPFDLMRSLKPQLGDRSRLDDEQ 807 Query: 714 YLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG---QSHYLPGDEALNCD 770 FL+AL+ AQ+ L++ Y G ++D R PS +QEL+ +I QS + D Sbjct: 808 GAFLDALLLAQENLWLFYNGFDLEDGEARDPSTALQELVQHIALICQSEQPDAEIDPMVD 867 Query: 771 ESEARVKAHLTCL---HTRMPFDPQNYQPGERQSYAREWLPAA----SQAGKAHSEFVQP 823 V H+ L H PFDP + + Y +W A S GK S Sbjct: 868 IHGLSVAQHIRQLYHVHPLQPFDPAGFADMQTPRYQDQWFAVAEYIRSAEGKRSSWINAH 927 Query: 824 LPFTLPETVPLETLQ-----RFWAHPVRAFFQMRLQVNFRTEDSEIPDT-EPFILEGLSR 877 P E + L+ R P R F + R D +P + EP +L L + Sbjct: 928 YPAL--EQKEIRVLKGDEWIRDMIFPARLFLKSVGVSTIRYAD--LPSSREPLLLNKLEQ 983 Query: 878 YQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFW--------ETQCQEMQQLAD 929 YQ+ LL E + L R LP G + W Q + +Q + Sbjct: 984 YQVRDFLLQQEQEIEPNLMLDR-------LPVGKTQQATWLGSQQEQQLLQERLLQLGKE 1036 Query: 930 RVIACRQPGQ-SMEIDLACNGVQITGWLPQVQPDGL-LRWRPSLLSVAQGMQLWLEHLVY 987 +Q Q S E+ + N +PQV L + S S + Q+WLE+L++ Sbjct: 1037 LTPVTQQSWQFSPELIIHIN-------VPQVPNSSYWLSMQSSSASEKRRAQIWLEYLLW 1089 Query: 988 CASGGNGE-----SRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLP 1039 A + R+ + + +F L++ +A YL ++ + G P LVLP Sbjct: 1090 LAYLNDDARSPELERIVIFSNKTLKFSGLSSSKAHEYLQLWLKAWEIGQQQP-LVLP 1145 >UniRef50_A5GLW8 Exodeoxyribonuclease V gamma chain n=4 Tax=Synechococcus RepID=A5GLW8_SYNPW Length = 1105 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 226/836 (27%), Positives = 363/836 (43%), Gaps = 95/836 (11%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLR+Y SNR ++L L+ + PFE ++V + ++WL L+ GI+A + Sbjct: 1 MLRIYRSNRAELLAQLLAQELNLNP-PGPFEQVEVVVNTWPTSRWLGERLASFNGISALV 59 Query: 61 DFPLPASFIWDMFVRVLP-EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHY----- 114 FP P S + + VL E P E + + + W ++ +LPQL++ E+ LR + Sbjct: 60 RFPFPGSRLRQLAQAVLSKEPPLEDPWRAERLVWTVIAVLPQLMQCEEAKPLRQWWNNQR 119 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE 174 T D+ R+ + L+ + AD D Y +YRP LA W G + L WQ L +AL E Sbjct: 120 TTSDALTREQWLLARQLADAVDDYALYRPQDLAGWLAGDDGDHLPAVLRWQPLLVRALAE 179 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 P Q+ ++ L S LP R+ + G+S L PV + LQAL + Sbjct: 180 RL-----PCEPFGLQVQQAVDQLRSGQAPATPLPKRLRLFGLSNLAPVQIDLLQALAAVM 234 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++ L PC W + QRR R EN + DG Sbjct: 235 QVELYLLTPCPDLWER-----------SAQRRR----------RLGEN--WTASPDGTWL 271 Query: 295 VGNPLL-ASWGKLGRDYIYLLSD-----LESSQELDAFVDVTPDNLLHNIQSDILELENR 348 + P L A G++G ++ LL L S+ + D F D Q +LE R Sbjct: 272 IEAPKLEAILGRMGGEFQLLLEGSGDCLLSSTDQADLFADPVAMAASEGRQGSLLEQLQR 331 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 +A + E F D S+ F C P REV+++ D++L + +D TL PRDI Sbjct: 332 QLA--SSEHFPLQHTS-----ADRSLLFMGCAGPWREVQLVRDQILHWMADDSTLQPRDI 384 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 +VM D++ Y+P + +V A LP+ ++DR + S + +AF++LL L R + Sbjct: 385 LVMTPDVERYAPLLASVLSDQDATGVDLPWRLTDRSQQNSPGLQQAFMTLLQLSAERLTA 444 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 + AL+ P + + + + SG RWG+D + E H+ R+ Sbjct: 445 TGLEALMSNPAFLDLQGLEAQEAMDITAALQRSGFRWGLDRE-----ERHGDDTHSLRWC 499 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL----VGHLASLLMQLNIWRRGLAQERP 583 L R L+G + G L + +A+L + LL Q+ W L Q Sbjct: 500 LDRWLIGLILPDEPG-----LALGSCAPAVADLSLQQLERWWPLLDQIAQWIAQLRQSGS 554 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQ 643 W+ R +L+ F + + I+Q + + + + + + E A Sbjct: 555 CTVWVERLRRLLSDLFGDGGAWDWELQAIQQGLETWLIQAGHCELNLETTVVIAVLEEAL 614 Query: 644 RLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR 703 D R R +G + + L PMR+IP +V+ L+G++ +PR GF L+ ++ + Sbjct: 615 SADSGRFGHR--SGAMTVSALEPMRAIPHRVIVLMGLDAASFPRTRERPGFHLLERQRRL 672 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ------ 757 GD S D DRY+ LEAL+S++Q L IS+ R + P VQ+ ++ + Q Sbjct: 673 GDPSSTDQDRYVLLEALLSSRQHLLISWSSRDERRGDALPPCPPVQQWLNLLRQELSEEA 732 Query: 758 ---------------SHYLPGD-EALNCDESEARVKAHLTCLHTRMPFDPQNYQPG 797 ++++P AL+CD R+ CL DPQ PG Sbjct: 733 MAQVLIEPPANPLDAANFIPAKTHALSCDR---RLLQARQCLD-----DPQGRAPG 780 >UniRef50_A7BX05 Exodeoxyribonuclease V gamma chain n=1 Tax=Beggiatoa sp. PS RepID=A7BX05_9GAMM Length = 458 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 146/444 (32%), Positives = 236/444 (53%), Gaps = 37/444 (8%) Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISA 723 + PMRSIPFKV+CLLGMND YPR LGFDL+++ PK GDRSRR +DRYLFLE+L+SA Sbjct: 1 MRPMRSIPFKVLCLLGMNDQTYPRPSKSLGFDLITKHPKPGDRSRRQNDRYLFLESLLSA 60 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCL 783 + YISY+G SI DN+ PSVLV EL+DYIG++ P L+ ++ Sbjct: 61 RDYFYISYVGHSIHDNTVMPPSVLVSELLDYIGKAFISPHQNLLD----------NIIIH 110 Query: 784 HTRMPFDPQNYQPGERQ--SYAREWLPAAS----QAGKAHSEFVQPLPFTLPE----TVP 833 H F P+ + ++ S++ E+ A+S + A + LP PE T+ Sbjct: 111 HPLQAFSPRYFNETDKHLFSFSDEYCHASSVLLNERQLAKDFIAESLPPPQPEANWKTLD 170 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 + RF+ +P RL + ++E + ++EPF + GL RY++NQ L+ +E D Sbjct: 171 INRFARFFKNPSEFLLTERLGIKLQSETHLLGESEPFEVRGLERYKLNQTLVEKSLEGVD 230 Query: 894 AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV--IACRQPG-QSMEIDLACNGV 950 + +A+G LP+G G+ + ++Q +RV RQ +++ ++L + + Sbjct: 231 LHEYHKIAKASGQLPHGGIGDYAYSKLVGQIQPFVERVQQATTRQKKRETVLVNLTIDDM 290 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR--LFLRKDGEWRF 1008 +ITG+L ++ D L+ +R + L +QLW+ HLV + R L + ++G W F Sbjct: 291 RITGYLGRLWHDNLVHYRCAKLKATDFIQLWIHHLVLNSLPEQKLPRHSLLIGEEGSWEF 350 Query: 1009 PPLAAEQALHYLSQLIEGYR-EGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 P+ +++ L L++ Y +G+ PL P+S A+++ L T ++A Sbjct: 351 KPV--NESIVILETLLKAYYWQGLMQPLSFFPQSSLAFVE---------QLTTGKTEEEA 399 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQ 1091 ++ + GN GE D+ +YQ Sbjct: 400 FSRAQNTWRGNDFANGEFDNDYYQ 423 >UniRef50_Q7VBK2 Exonuclease V gamma subunit n=1 Tax=Prochlorococcus marinus RepID=Q7VBK2_PROMA Length = 1103 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 264/1154 (22%), Positives = 483/1154 (41%), Gaps = 158/1154 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDP--FEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 ML VY SNR E L E + + RL+ P F+ I+V + ++WL ++ GI+A Sbjct: 1 MLTVYRSNRA---EWLAEVLAAQLRLNKPKPFQSVEIMVNTWPTSRWLSEQIATFNGISA 57 Query: 59 NIDFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT 116 I+FP P S + FV++ E+ + +N ++W+++ +LP+LL+ E+ L ++ Sbjct: 58 LIEFPFPNSHL-RKFVQLFLGLEVTSKDPWNTNQLTWEIIDVLPKLLKEEESKHLHEWIQ 116 Query: 117 DDSDKRK-----LFQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAWQA 166 S+ K ++ L+ A+ ++Y++YRPD +AQW + + L WQ Sbjct: 117 KGSNNNKELDKRIWTLAKSIANTINEYILYRPDVIAQWWNLDSKPTKSLRDLPPHIKWQP 176 Query: 167 PLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQA 226 L + L T +P + N + L+ LP + I G+S+L P+ ++ Sbjct: 177 LLLRLL--KTKIKSEPICLQIN---EVVTRLKRKEHSSKELPRDLLIFGVSSLAPIQIEL 231 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 +QAL + + + P + W K +R D ++P+ Sbjct: 232 IQALSSVVNVQIFLLTPGQDLWKRCKS----------RREELGNDWKVPM---------- 271 Query: 287 FNSDGEQDVGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQS 340 DG + P + AS G++G ++ LL L QE D F ++ + Sbjct: 272 ---DGMWMLKTPRIEASLGRMGSEFQQLLEGSGEYQLGEWQEKDLFSMPVKIATYNSKEP 328 Query: 341 DILE-LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 LE L+ V + R D+S+ F +R+V+++ D+++ L Sbjct: 329 TFLEQLQESLVVNKASIQLHRKHK-------DNSLIFLESPGQRRQVQLIRDQIIQWLAT 381 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLL 458 D TL PRDII+M + +P I +VF A LP+ I+DR + +++ + + Sbjct: 382 DDTLQPRDIIIMTPQVKRLAPLISSVFNDISATNVNLPWKITDRSQIEKPGLIQFILEFI 441 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 + SR + ++ LL P L +F + ++ + + + E+G RWGID+ + Sbjct: 442 DIASSRLTALNLDRLLTNPALQNQFKLDQDEVDRITYCLYETGFRWGIDEKDRN-----G 496 Query: 519 TGQHTWRFGLTRMLLGYAMES----AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 H+ + L R LLG + + +G+ + P+ SS + +LL L Sbjct: 497 NSTHSLEWCLERWLLGIVLPNEPNFVEGD---IAPF--SSTFTVNEITKWWNLLSLLCKH 551 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV-- 632 + L R +W+ + ++ E E+ T E + I E D + Sbjct: 552 LKALRNSRKSNQWVFQLKSIVTDLL----ENESNRTW-EGELFNITIENWSQDSNDCILN 606 Query: 633 --PLSLLRDELAQ--RLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688 PL ++++ L + L+ R R +G + I L PMR+IP +V+ L+G+++ V+PR Sbjct: 607 IQPL-VIKEILTELFSLENGRFGHR--SGKITISALEPMRAIPHRVIVLMGLDELVFPRS 663 Query: 689 LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748 F+L+ QK GD + D DRY+ LEA++S +Q L I++ R + + + Sbjct: 664 EERPSFNLLEQKRLLGDPNNCDKDRYVLLEAIMSCRQHLLITWNSRDEKTGEKLEAPAPI 723 Query: 749 QELIDY----------IGQSHYLPGDEALNCDESEARVKAHLTC----LHTRMPFDPQNY 794 + IDY +G P + N + + ++C L R+ D N+ Sbjct: 724 NQCIDYLKNELSESDQLGLVQSPPPNPLSNENFIATEYQQPISCDRRNLEARIFLD--NF 781 Query: 795 QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQ 854 ++ + +P F + + E++ + + W + + LQ Sbjct: 782 TKPKQTALG---IP-----------FRWEINYKFKESILTNDIVKSWLRAPQITWLEHLQ 827 Query: 855 VNFRTEDSEIPDTEPFILEGLSRYQ-INQQLL--NALVEQDD-------AERLFRRFRAA 904 + R + I + F L L RYQ +N++L N L ++ A+ ++ R Sbjct: 828 LRSREKKISIETIDTFNLNELQRYQLLNEELFTQNNLESDNNVLPILLGADDWQKKLRGQ 887 Query: 905 GDLPYGAFGEIFWETQCQEMQ-QLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDG 963 G LP + E+ +C+ ++ ++A R G+ E +L N IT + Q + Sbjct: 888 GILPPKSAAEL----ECEILEARIASLSSLIRDLGELEEKNLQINNENITYLIIQ---ED 940 Query: 964 LLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG----------EWRFPPLAA 1013 +L L A M WL+HL C L + + F P+ Sbjct: 941 ILVVEIGKLKSATIMSAWLQHLQVCLYDDKPRKTLIISRSTTKSSQHQYKLSAEFTPILK 1000 Query: 1014 EQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQ 1073 + A+ L + +G++ V P+SG K Y + + + F + Sbjct: 1001 KDAMEMLQTIYMLVEQGLTECWPVPPQSGWELFKARYMKKTN-----------SNNYFKK 1049 Query: 1074 AYEGNMMVRGEGDD 1087 ++G+ GE + Sbjct: 1050 KWKGSFNQHGENHN 1063 >UniRef50_A9BB00 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BB00_PROM4 Length = 1105 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 265/1122 (23%), Positives = 478/1122 (42%), Gaps = 142/1122 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEM--ILVQSTGMAQWLQMTLSQKFGIAA 58 ML +Y SNR E L + E+ R + P E I+V + +WL +++ GI+A Sbjct: 1 MLTIYRSNRA---EWLANVLAEQLRANPPGLSENVEIVVNTWPTGRWLGEEIAKINGISA 57 Query: 59 NIDFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT 116 + FP PA+ + + + L I + + + W ++ LP+LL++E+ +L+ +L Sbjct: 58 LVRFPFPAAQLKTLVRKFLGIEVINDDDPWEANQLIWPILNSLPELLQKEEAGVLQKWLE 117 Query: 117 DDSDK-----RKLFQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAWQA 166 D + R +QL+ A FD+Y++YRPD ++ W E +L L + WQ Sbjct: 118 RDLSQSGKLSRDEWQLAKTIAYTFDEYIMYRPDVISDWWGTENEINNLKSKLPKYIQWQP 177 Query: 167 PLWKALVEYTHQLGQPRWHRANLYQRFIET-LESATTCPPGLPSRVFICGISALPPVYLQ 225 L L + Q +P L R + + L+ LPS + I GI++L PV L+ Sbjct: 178 ILINLLKQRITQ--EP----FGLQVRNVASKLKKGIAPKQNLPSDLRIFGINSLAPVQLE 231 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 +QAL +E+ + PC+ W K +R + + ++ + + Sbjct: 232 LIQALSCIMEVKVFLLTPCKDLWSRCK-----------TKREEYGEG----WKVANDKLW 276 Query: 286 LFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ-----ELDAFVDVTPDNLLHNIQS 340 L N L A+ G++G ++ LL Q E D F L + Sbjct: 277 LLNKQR-------LEATLGRMGSEFEQLLEGSGEYQLGEWDEKDLFAMPATIALNKQRKP 329 Query: 341 DILE-LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 +LE ++ R V IE RS LD DSSI+F C P+R+++++ D++L L Sbjct: 330 TLLEQIQQRLVTNECIEPLQRS-----LD--DSSISFTECPGPKRQIQIVRDQILQQLAL 382 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLL 458 + L P+DI++M ++ ++ I ++F A LP+ I+DR + + I L+ Sbjct: 383 NKNLEPKDILIMTPQVEKFAHLIPSIFNDVSATGVTLPWKITDRSQYDQPGLTQCIILLM 442 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 + +R + ++ LL PV+ + + + + + + E+G RWGI+ LE Sbjct: 443 EIACTRLTASNLDQLLTNPVIKDLYKLDDSEIDKITNCLQETGFRWGINS-----LERDG 497 Query: 519 TGQHTWRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 HT + L R L+G + + G + P+ S G+ + +L ++ +G Sbjct: 498 EETHTLNWCLERWLVGMVIPTIPGLVLGGIAPF--SKGISISELSKWWEILSKICNMLQG 555 Query: 578 LAQERPLEEWLPV----CRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP 633 L Q +W V C D+ N E + + I+ +A A+ + V Sbjct: 556 LRQSHSCMKWGLVLKGLCDDLCNNDRKWSWERQRFLRAIDDWIRA--ADCFKKEIKIEVV 613 Query: 634 LSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 +++D +A+ + R R G + I L PMR+IP K++ L+G+++ ++PR+ G Sbjct: 614 AEIVKDLIAK--EAGRFGHR--TGRITISALEPMRAIPHKMIVLMGLDETIFPRKQQRPG 669 Query: 694 FDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 F L+ K GD D DRY+ LEALIS ++ L I++ GR + PS VQ+ + Sbjct: 670 FSLLDHKHFLGDPRINDKDRYVLLEALISTRETLLITWDGRDEKTGDSLEPSSPVQQFFE 729 Query: 754 YIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP----GERQSYAREWLPA 809 Y+ H L G+++ S +K + F N QP +R R+W+ A Sbjct: 730 YL--QHEL-GEKS-----SMGLLKKPSPNPLNKNNFLSCNNQPPISCDKRDLETRQWMNA 781 Query: 810 ASQAGKAHSEFVQPLPFTLPETV-----PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 + G PL + L + E L+ + A P + + + ++ R + I Sbjct: 782 --KQGSRGLTLALPLNWNLSKNAVNSSSDNELLKSWLATPQLKWLE-QFHLHPREWNKPI 838 Query: 865 PDTEPFILEGLSRYQI------------NQQLLNALVEQDDAERLFRRFRAAGDLPYGAF 912 D + + L +++I N Q+++ + + ++ ++ G P + Sbjct: 839 EDLDSLSIPELIKFKILKQEFTELITSSNNQIISPEINERESPNWQDKYLGQGVFPPKSA 898 Query: 913 G----EIF---WETQCQEMQQLAD-RVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGL 964 EI W + + + +L + + + + ++ EI +A N + Sbjct: 899 ATLESEILGRRWTSLIKSLSKLGEVKRDSLMEDNETGEILIANNCTVLV----------- 947 Query: 965 LRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL-RKDGEWR---------FPPLAAE 1014 L + WL HL A + + + + R D + + P+++ Sbjct: 948 ---EIGRLKAKTILNTWLTHLKLSAYHKSTKKTVVIARSDSNTKIDSYEVMLSWHPMSSI 1004 Query: 1015 QALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 +A L +L + G+ V PESG K Y ND Sbjct: 1005 KAESILDELKQQAHNGLKQCWPVPPESGWKLAKARYKKSNDC 1046 >UniRef50_Q3AJ30 Exodeoxyribonuclease V, gamma subunit n=5 Tax=Synechococcus RepID=Q3AJ30_SYNSC Length = 1081 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 297/1101 (26%), Positives = 459/1101 (41%), Gaps = 145/1101 (13%) Query: 1 MLRVYHSNRLDVLEALMEF-IVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML VY SNR + L L+ ++E++ P E ++V + ++WL L+ GI++ Sbjct: 1 MLTVYRSNRAEFLARLLSRQLIEQQ--PGPLETVEVMVNTWPTSRWLGEQLATANGISSL 58 Query: 60 IDFPLPASFIWDMFVRVLPEIP--KESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL-- 115 + FP P S + + +VL +P ++ + + W ++ LLP+LLE+ LR +L Sbjct: 59 VRFPFPGSRLRQLVRQVL-HLPAQEDDPWRAGQLVWAVLELLPELLEQPVAQPLRVWLAQ 117 Query: 116 ---TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKAL 172 T R +QL+ AD D Y +YRPD L QW+ + WQ LW+ L Sbjct: 118 REGTASGLTRDRWQLARSIADAMDDYALYRPDQLEQWKQPRPDDD------WQPVLWRLL 171 Query: 173 VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 + PR + +E L P LP R+ + GISAL PV + +QAL Sbjct: 172 AQRL-----PRAPFGLQVREAVECLRRGDVDPALLPERLRLFGISALAPVQVDLIQALSG 226 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE 292 + + + PC W RR S D L DG Sbjct: 227 LLAVEIYLLTPCPDLWQRCGS-----------RRASLGDE------------WLIPPDGG 263 Query: 293 QDVGNPLL-ASWGKLGRDYIYLL-----SDLESSQELDAFVDVTPDNLLHNIQ-SDILEL 345 P L A G++G ++ LL + L +E D F Q + + +L Sbjct: 264 WLAEAPRLEAVLGRMGAEFQQLLEGSGEAQLGERREGDLFAGSLQIAAAEERQPTLLDQL 323 Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 + + V +I E +RS + D S+ F P REV+++ DR+L L DP L P Sbjct: 324 QQQLVDAESIAELNRSSD-------DQSLLFQAAPGPWREVQLVRDRILQWLAADPDLEP 376 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPA-DRYLPYAISDRRARQSHPVLE-AFISLLSLPDS 463 RD++VM I+ Y+P + +VF A LP+ ++DR ++QS P L A +LL L + Sbjct: 377 RDVLVMTPQIERYAPLLSSVFNDTAAFGVDLPWRLTDR-SQQSSPGLSMAMFTLLELAAT 435 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 R + + LL P L + +T E + Q + SG RWG+D E+ H+ Sbjct: 436 RLTATGLERLLANPALQGQQGLTPEEAVLITQTLQRSGFRWGLDARERGGDEV-----HS 490 Query: 524 WRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 R+ L R LLG + G P+ + L + + +LL ++ L + R Sbjct: 491 LRWCLDRWLLGLVLPVEPGLAPAGAAPFQQE--LDPDRLVRWWTLLDRVARMLDRLREPR 548 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII------AEGLGAQYGDAVPLSL 636 P W+ + + +L F AE A T Q W A + A AV L + Sbjct: 549 PCHGWVELLQSLLQELF---AEG-GAWTDEAQSWAAALEEWRLRAHDCPLDLDAAVALEV 604 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 L++ L+ +D R R +G + I L PMR+IP KVV L+G++ +PR GF L Sbjct: 605 LQEALS--VDSGRFGHR--SGALTISALEPMRAIPHKVVILMGLDSADFPRPSRRPGFHL 660 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 + Q+ + GD D DRY+ LEAL+SA++ L IS+ GR + + P+ V++ + + Sbjct: 661 LEQQRRLGDPRSSDQDRYVLLEALMSARRHLLISWCGRLERTGEPQPPAAPVEQWLSVLQ 720 Query: 757 QSHYLPG----------------------DEALNCDESEARVKAHLTCLHTRMPFDPQNY 794 + G + L+CD + + L +P +PQ Sbjct: 721 EQLQRAGASTEGLLVTPAANPLSRENFRPEAPLSCDRRQLEARRCLDAAPASVP-NPQGL 779 Query: 795 QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQ 854 ++A W P + +E L L LQ P +A+ Q R Sbjct: 780 ------AWASLWQP---EINDDEAEGRDGDDLALDPEALLAWLQ----QPQKAWLQAR-- 824 Query: 855 VNFRTEDS--EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAF 912 R + + D E LEGL RY + L A G LP GA Sbjct: 825 -GLRPGEGIEAVEDLEALELEGLQRYLLLNHELEEQFILGSAPDWTASLAGQGVLPAGA- 882 Query: 913 GEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQ---VQPDGLLRWRP 969 G + + Q+ Q R +A P + V + LP D + +P Sbjct: 883 GAALEQEELQQRWQALQRQLASLGPCR--------REVPVLAGLPMPLLYAGDTQVVVQP 934 Query: 970 SLLSVAQGMQLWLEHLVYCASG-----GNGESRLFLRKDG---EWRFPPLAAEQALHYLS 1021 +L+ A M+ WL+HL+ CA G G+ R G R+ L +A L Sbjct: 935 GMLTAAAVMRGWLQHLLLCAEGSAPAAGSAVVARSTRVAGAEVHVRWSVLPTVEAEDQLQ 994 Query: 1022 QLIEGYREGMSAPLLVLPESG 1042 QL R+G+ V P+SG Sbjct: 995 QLARLARQGLERCWPVPPKSG 1015 >UniRef50_Q6MFB7 Putative exodeoxyribonuclease V gamma chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB7_PARUW Length = 1195 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 281/1147 (24%), Positives = 479/1147 (41%), Gaps = 193/1147 (16%) Query: 2 LRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAA 58 L V+ SN+L +L E L + ++ PF+ +++V M WL + ++Q GIAA Sbjct: 38 LEVFFSNQLSILYEQLKNNLFGFKQ--TPFKKRLVIVYGPAMQTWLTLKMAQDPDLGIAA 95 Query: 59 NIDF-PLPASF-----IWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLL-----ERED 107 I+F L +F + + +P I + S ++ +L+T+L E++D Sbjct: 96 GIEFLYLNQAFETLIHYFQLKNEKIPSILELSL----AIEKELLTVLQDYHRLSDEEQQD 151 Query: 108 FTLLRHYLTDDSDK------------RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV 155 + L +YL +S + ++L LS A +F +Y Y +++WE Sbjct: 152 WLTLIYYLKLNSKQVGENLKLTRKMEKRLTGLSYHLAKIFQEYGKYAYSLVSKWEKS--- 208 Query: 156 EGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICG 215 E + WQ+ LWK+L + G W +A F +TL+ C V Sbjct: 209 ----EHRGWQSRLWKSL--FGGNQGWTYWTKA-----FQKTLKFFPEC------EVHFFS 251 Query: 216 ISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELP 275 IS + Q L L I+ +PC +W DI+ L T ++ Sbjct: 252 ISFISKAEFQFLSKLANVAPIYYYLLSPCAVFWSDIRSDNETRYLQTYWQQ--------- 302 Query: 276 LFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQEL------------ 323 + A Q+ + NPLLA++GKLGR+ Y + + +++ Sbjct: 303 --KLGSKASQVLQLEELLRDRNPLLANFGKLGREMAYQIEESQATTHAGYILPSHVSELN 360 Query: 324 -------DAFV--DVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSI 374 D F+ + P LLH IQ+DIL + N G F R D+ SI Sbjct: 361 DEIFFQEDLFLKESLQPLTLLHAIQADILMMRNPE--GKPPFNFERKDD---------SI 409 Query: 375 TFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY 434 H+ S +RE+++L+ LL + E+D TL P DIIVM I Y P+IQ+VFG + Sbjct: 410 QLHIAPSIRREIQILYHNLLKLFEKDSTLQPNDIIVMAPQISDYVPYIQSVFGLEESQ-- 467 Query: 435 LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLR 494 L + I D + +++ F L+ L +SR+ ++L L + +T+ ++ Sbjct: 468 LDFQILDLGMQAQSEIVQGFFQLIRLSESRWEVSELLQLFGHRLFQRCHQLTQSDYYLIQ 527 Query: 495 QWVNESGIRWGIDDDNVREL---------ELPATGQHTWRF--GLTRMLLGYAMESAQGE 543 +W+ ++GIRWG D + EL + ++ TW F + L ++SA Sbjct: 528 EWIQQAGIRWGEDWLHRNELLQRHHCEKEMVDSSSVGTWNFGLTRLLLGLTTVVKSADSH 587 Query: 544 WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA-----QERPLEEWLPVCRDMLNAF 598 +P + AEL+ LL L R L+ + +EEW +L+ + Sbjct: 588 SFDSIPCEGIDFSQAELMERWIRLLHSL---RDDLSPLHDRSQMCMEEWSCYLSCLLDTY 644 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL--LRDELAQRLDQERISQR-FL 655 F + E ++ E+ G A+ S ++ L L Q I+ R Sbjct: 645 FKCEFEDSQSIADYEELKSQFKLLGDSAKTFKETKFSFQTIKFHLNNLLQQRGITYRESH 704 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRY 714 + C++MP+RSIP KV+ +LGM +G +PR +LM Q + + D DRY Sbjct: 705 LQTIRFCSMMPLRSIPAKVIAVLGMQEGAFPRAGYHTSLNLMVGQDNLDYNPNSTDYDRY 764 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEAL S +SY G + QD+ PS++++E Y+ + +YL ++ Sbjct: 765 LFLEALQSVTDVFIVSYQGYTYQDSKVLQPSLIIEEFFTYLDK-YYLIQNK--------- 814 Query: 775 RVKAHLTCLHTRMPFDPQNYQPGE-RQSYAREWLPAASQAGKAH--------SEFVQPLP 825 ++ H FD ++P +Y++ A Q + H +F+ Sbjct: 815 KISEQCVSKHPFDAFDVSYFKPNSILNNYSQFDYRIAEQYYQTHKTPSHRLLKQFILS-N 873 Query: 826 FTLPETVP------LETLQRFWAHPVRAFFQMRLQVNFR-TEDSEIPDTEPFILEGLSRY 878 ++L + +P L+TL PV+ + L + ED I + E L L++Y Sbjct: 874 YSLEDILPSHTVIDLKTLNTLVRSPVKFYLNRGLDIYLEGYEDRIIKNQEELGLSALNKY 933 Query: 879 QINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV------- 931 Q+ Q L ++ E++ + G LP G F + + E+ ++ R+ Sbjct: 934 QLKQFAL-----KEPFEKVMQIADKEGKLPLGMFKTVATKRFKDEIDEVHQRLYKHGINP 988 Query: 932 ---------IACRQPGQ---------SMEIDLACN-GVQITGWLPQVQPDGLLRWRPSLL 972 +C +P Q +++++ + + I G LP V GL+ +L Sbjct: 989 SELFQIEFCTSCSEPCQIQKDQWLLPALQLNYSDQYQISIIGKLPFVSKKGLV-----VL 1043 Query: 973 SVAQGM----QLWLEHLVY-CASGGNGES---RLFLRKDGEWRFPPLAAEQALHYLSQLI 1024 S G + W + L++ A+ N E+ L L K E + + ++ YL LI Sbjct: 1044 SQGSGFSDAWKAWPQFLLFNYATTFNIEAIERNLILSKSSEVK--KAFFKDSIPYLKHLI 1101 Query: 1025 EGYREGM 1031 Y M Sbjct: 1102 NYYALSM 1108 >UniRef50_D1R7X4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X4_9CHLA Length = 1144 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 290/1162 (24%), Positives = 484/1162 (41%), Gaps = 188/1162 (16%) Query: 29 PFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEI--PKESAF 86 PF +I+V S M W+ ++++ GIA + + D ++ L ++ P ++ Sbjct: 31 PFCRRLIIVPSPAMKSWVMFKMAEESGIAMGFE-----TIYLDQGIQRLYQLIEPNQTLA 85 Query: 87 NKQS---MSWKLMTLLPQLLERED-------------FTLLR-----HYLTDDSDKRKLF 125 N S ++ L + Q+L R + F LR L+ +KR L Sbjct: 86 NHPSSFELTLALEVEVRQILMRCESLSSEEHELWKPLFGYLRFSPSIKTLSLKGEKR-LI 144 Query: 126 QLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE----YTHQLGQ 181 L K A LF +Y + + L W +WQ LWK + E Y Sbjct: 145 SLVEKLAGLFLEYGIAGGEALEAWRQA-------PPSSWQVYLWKKIFERGNAYNWTYPY 197 Query: 182 PRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 ++ ++ ++ I+ L+ V + +S LP +Y LQ + + I + Sbjct: 198 HYLNQISIPEKRIDQLQ------------VHLFAMSYLPALYHNFLQKIAQAISVSFYLL 245 Query: 242 NPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLA 301 +PC +W D A K R +R+ + +D+ A Q+ + +D NPLLA Sbjct: 246 SPCEAFWSD----ACSDKESKRMQRYWKK-------QDAPEAQQVALEELLRD-KNPLLA 293 Query: 302 SWGKLGRDYIYLLSDLE---------SSQELDAFV---DVTPDNLLHNIQSDILELENRA 349 ++G+LGR+ + D ++ LD +T D LLH+ SD L Sbjct: 294 NFGRLGREMAVAVEDSNVRTSACYTLPARALDFPCYEESITSDILLHS--SDRPYLTLLQ 351 Query: 350 VAGVNIEEFSRSDNKRPLD--PLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT---LT 404 ++ F D+ PLD DS+I H S REV++LHD L+ ++ P L+ Sbjct: 352 AVQTDMVLFRNPDHTPPLDLSENDSTIQIHATPSLLREVQILHDNLIRLIHNAPKENPLS 411 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 P + +VM DI Y+PFI+ VF + + L Y + D + + +++F+ LL L SR Sbjct: 412 PNEWVVMAPDIRIYAPFIKMVFSNPNSP--LDYKMMDAELPEQNLYIQSFLHLLKLSSSR 469 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGID---------DDNVRELE 515 + + +L L D ++ + E + +R W+ E+GIRWG+D D+ Sbjct: 470 WDTVSLLTLFDYLPFRNKWGLHFEDIDQIRTWIKETGIRWGMDIAHRQMILKQDHCAHTL 529 Query: 516 LPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYD-ESSGLIAELVGHLASLLMQLNIW 574 + TW G +L G +E E ++L D S L+ + + + SL L Sbjct: 530 VDENPAGTWEHGFQMLLKGLILE----ENDTILSVDITQSTLLGKWIYIVRSLHQDLIPL 585 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 G ER ++EW + + N + LP E L+E +G Q+ Sbjct: 586 NDG--SERTIQEWGTYLQHLSNFYLLP--ELSEHQELLEHLLHPFF-KGFLPQH--TFSF 638 Query: 635 SLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 ++ L +E +S R + V C+++PMR+IP K + LLG+ +G +PR L Sbjct: 639 KTIQPILLSLFKKEDVSYRETSLRAVKFCSMLPMRAIPAKGIALLGLEEGAFPRFLPESS 698 Query: 694 FDLMSQKPKRG-DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 L++ P+ S+ D DRYLFLE L SA++ L +SY S E+ PS+LVQEL+ Sbjct: 699 LHLLAFHPQADYSPSQIDFDRYLFLETLTSAREYLLLSYQAFS-STGKEQPPSLLVQELM 757 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ 812 Y+ +S+ L GD C K H ++PQ + S+++E +A Sbjct: 758 SYLDKSYRL-GD---TCPSKRCFFK------HPFHGYNPQYFDNSSLNSFSQENYRSALA 807 Query: 813 AGKAHSE----FVQPL-----PFTLPETVPLETLQ--RFWAHPVRAFFQMRLQVNFRTED 861 + K F+ P L E LE Q +P +F RL + E+ Sbjct: 808 SLKTEKTSKHCFIPKFLSLRTPLCLEEEHILEIRQLIALARNPFEHYFNKRLGIYLEKEE 867 Query: 862 S-EIPDTEPFILEGLSRYQINQQL----LNALVEQDDAERLFRRFRAAGDLPYGAFGEIF 916 S +IPD + F L LS+ + ++ L+AL+ Q++ + G LP+G F + Sbjct: 868 SRKIPDDDLFSLTSLSKASLKKEALKHPLDALLTQNEIK---------GRLPFGYFKALS 918 Query: 917 WETQCQEMQQLADRVIAC-------------RQPGQSMEIDLAC-------------NGV 950 + +E++Q ++ C + +I AC + Sbjct: 919 LDQLKKEIEQNKSLLLNCGIALDQIFQIELTDAVSEPTQIHPACWLLPPLELTYQVDKRI 978 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVY-CASGGNGE---SRLFLRKDGEW 1006 +I G LP+V P GLL + + ++ W +L+ C + + L K G Sbjct: 979 KIVGILPEVTPQGLLAFIRD--EKKEVIKAWPAYLILNCLANVYPDMFGKHLIFAKSGSI 1036 Query: 1007 RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQK 1066 + P +Q L ++ Y + +LPE W+ + L +QK Sbjct: 1037 KAPFF--DQPFTLLEHFLDYYFICQTHVSPLLPE----WIPDMIENPKSCQLK----IQK 1086 Query: 1067 ARTKFLQAYEG--NMMVRGEGD 1086 + T Y N M RG+ D Sbjct: 1087 SLTGHFSLYNDYVNWMTRGDVD 1108 >UniRef50_A2C3H2 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=2 Tax=Prochlorococcus marinus RepID=A2C3H2_PROM1 Length = 1097 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 259/1140 (22%), Positives = 470/1140 (41%), Gaps = 140/1140 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDP--FEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 ML +Y SN+ E L E + + RL+ P E I+V + ++WL LS I A Sbjct: 1 MLTIYRSNKA---EWLAEILGQELRLNPPEITEEVNIIVSTWPSSRWLSEKLSIINNINA 57 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKES-AFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 + +P P +++ + R++ P E + K + W ++ LLP+L++ E+ ++R +L + Sbjct: 58 LVKYPFPGTYLKRLVKRIIGIDPDEKDPWEKNQLVWNILELLPELMKEEEAQVIRSWL-E 116 Query: 118 DSDKR------KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKA 171 SDK+ L+ L++ A+ FD Y++YRP+ + QW + + E + LW+ Sbjct: 117 ISDKKDTQINLNLWDLANNIAETFDDYILYRPEIIKQWLSKKTKKRSREISVNKNILWQE 176 Query: 172 LV---EYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 ++ Y P + ++ I+ L+ P +++ G+S+L P+ + +Q Sbjct: 177 ILFNLLYKKINKDPFCIQV---EKAIKRLKKDDISKLDYPKNLYVYGLSSLAPLQIDLIQ 233 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 A K I I + +PC W QR E R L FR++ N Sbjct: 234 AFSKVINIKIYIISPCNDLW---------------QR---CEARRLQ-FRNTWNTP---- 270 Query: 289 SDGEQDVGNPLLASW-GKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDI 342 D + + +P L ++ G++G +Y LL L E D F +L +I ++ Sbjct: 271 PDRQWLIESPRLEAFLGRMGAEYQQLLEGSGEYQLGDRNEEDIF------SLTADIATNK 324 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 N ++S+N + D S+ F R+VEV+ D +L + ++ Sbjct: 325 GNKPNLLEQLQQELLSTKSENILTKEKSDKSLLFLKSPGKYRQVEVIRDYILQLFSDNRE 384 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLP 461 + PRDI++M +DSY+P I +VF + + LP+ I+D+ ++ ++L + Sbjct: 385 IQPRDILIMTPQVDSYAPIITSVFNNIDKNTTQLPWVITDKSQEDKVGLIHFVLNLFEIS 444 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 SR + LL P L + +I+ + + + + + +G WG+D E Sbjct: 445 VSRLTASIFENLLINPALRTQQNISIDEVSDIIKNLQSAGFTWGLDSS-----ERYGEET 499 Query: 522 HTWRFGLTRMLLGYAM-ESAQGEWQSVLPYDE--SSGLIAELVGHLASLLMQLNIWRRGL 578 H+ + L R LLG + ++ + PY E SS + G L+ L +++ R Sbjct: 500 HSLCWCLERFLLGLVLPDNPINGISHISPYSENISSAEFIKAWGILSKLCNYIDVIR--- 556 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAE---TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 +R +EW+ + ++ F E E + + W +I + + + Sbjct: 557 -SKRSCKEWIKLITSLVKDLFGDGGEWAWEEQQLLTVVNNW-GLITDNCELE----IDCL 610 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 +++D + + L G + I L PMR+IP K++ ++G+ +PR F+ Sbjct: 611 VVKDIITKALSSTNGKFGHRTGKITISALEPMRAIPHKIIIIMGLESRTFPRIENRRSFN 670 Query: 696 LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI 755 L+ +K + GD ++ D DRY LEALIS +Q L +S+ + + + P +Q+ ++Y+ Sbjct: 671 LLERKRELGDPNQYDKDRYSLLEALISTRQNLLVSWNSKDEKTGEDLEPPSPIQQWLNYL 730 Query: 756 GQSHYLPGDEALN--CDESEARVKAHLTCLHTR----MPFDPQNYQPGERQSYAREWLPA 809 GD E A H + T M D +N + AREWL Sbjct: 731 KIKL---GDNTFKDILIEPPANPLDHFNFIKTENSQIMSCDRKNLE-------AREWLEK 780 Query: 810 ASQAGKAHSEFVQPLPFTLPE-------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 A LP E + E + + +P + + ++ R + Sbjct: 781 AIPT----KNISLALPLKRKEINVSELKSYSFEKTKEWLLNPQITWLKEH-EIQSREFVN 835 Query: 863 EIPDTEPFILEGLSRYQI------NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIF 916 I D + L L RY++ + LLN ++D+ + G P G I Sbjct: 836 LIEDNDFLELSELERYKLLKHRLQSSDLLNINHTKNDSNYWEENYSGKGVFPPKGSGLIE 895 Query: 917 WETQCQEMQQLADRVIAC-RQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVA 975 + + L + A + +S+E+ G L++ L Sbjct: 896 KDLLQERWNNLISAIYATGKITKRSIEMQELEGEFYFGG-------KNLIQIEVGSLKYK 948 Query: 976 QGMQLWLEHLVYCASGGNGESRLFLRKDGEWR----------FPPLAAEQALHYLSQLIE 1025 M WL HL A+ L + K ++R P+ ++A L QL Sbjct: 949 TLMNGWLNHLYLSANSSFNYKTLIISKKTDYRKKIQFEVSKEILPINTKEAKKNLRQLHR 1008 Query: 1026 GYREGMSAPLLVLPESGGAW-LKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGE 1084 G + + PESG + L T + +N+ L F + +EG++ +GE Sbjct: 1009 LATAGRNNCWPIPPESGLDYALATKDNNKNEQDL------------FQKKWEGDLYRQGE 1056 >UniRef50_Q05XZ7 Possible exodeoxyribonuclease V gamma chain n=1 Tax=Synechococcus sp. RS9916 RepID=Q05XZ7_9SYNE Length = 1078 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 293/1128 (25%), Positives = 469/1128 (41%), Gaps = 138/1128 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDP--FEPEMILVQSTGMAQWL--QMTLSQKFGI 56 ML +Y SNR +VL + + L P E ++V + ++WL Q+ L+ GI Sbjct: 1 MLTLYRSNRSEVL---ADVLAANLSLHPPGVLEEAQVVVNTWPTSRWLGEQLALANPSGI 57 Query: 57 AANIDFPLPASFIWDMFVRVLPEIPKESA---FNKQSMSWKLMTLLPQLLEREDFTLLRH 113 AN+ FP P S + +L + + Q++ W L+ LLP+LL+ L+H Sbjct: 58 TANLRFPFPTSLLRHTVDGLLEQQSSGGGADPWRAQNLVWPLLELLPELLDHPASAPLQH 117 Query: 114 YLTDDSDKR------KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAP 167 +L L+QL+ AD D Y +YRP L W G + G + Sbjct: 118 WLNTRKSAALEVLDPPLWQLARAIADAIDDYSLYRPAMLEAWLKGQATDARGTPLSPTML 177 Query: 168 LWKALVEYTH-QLGQ-PRWHRA-NLYQRFIETLESATTCPPGLPSRVFICGISALPPVYL 224 + L++ H +LG P RA L +R E PP P R+F G+S+L PV + Sbjct: 178 WQQQLMQQLHSRLGCLPFGMRARQLIRRLQEGWRPER--PPQPPLRLF--GLSSLAPVQV 233 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG 284 + LQAL I L PC W QR+ S E + PL Sbjct: 234 ELLQALSCLRSIELYLLTPCPELW---------------QRQSSIES-QAPL-------- 269 Query: 285 QLFNSDGEQDVGNPLL-ASWGKLGRDYIYLL-----SDLESSQELDAFVDVTPDNLLHNI 338 D E + P + A +G+LG ++ LL + L S + LD F Sbjct: 270 -----DEEWLLTVPSVEARFGRLGAEFQQLLEGSGETQLGSWRALDPFFFPATTASSQGK 324 Query: 339 QSDILE-LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 + +LE L+ V G + R+++ D S+ FH C R+++VL D++L +L Sbjct: 325 EPTLLEQLQEHLVHGTPTDLLPRTED-------DQSLQFHACPGRLRQLQVLRDQILQLL 377 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFIS 456 D +L PRDI+VM +++++P + AVFG A LP+ ++DR + + + + Sbjct: 378 ANDDSLEPRDILVMTPQVEAFAPLVSAVFGDNDATGVRLPWRLTDRSQQSEAGISQGVLQ 437 Query: 457 LLSLPDSRFVS---EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 LL+L R + E VLA + P+L A + + + Q + ++G RWG+D + Sbjct: 438 LLALGGERLTASALETVLA--NAPLLRA-HQLEPDEAEDITQSLQQAGFRWGLDSRDRG- 493 Query: 514 LELPATGQHTWRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLASLLMQLN 572 H+ + + R++LG G ++ P L E G LL QL Sbjct: 494 ----GDPTHSLAWAIDRLVLGVVYPETPGLALENTAPMALPGSL--EQQGRWLGLLRQLQ 547 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 + L+ R ++ W+ R L A F + + I +++ + ++ Sbjct: 548 RSLQWLSHSRSVQAWVEGLRPQLMALFADGGDWAWELQTI----HSVLTDWGEVAGNSSL 603 Query: 633 PLS--LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLA 690 LS ++ + LA+RL + +G + I L PMR+IP KV+ L+G++ G +PRQ Sbjct: 604 ELSAPVVGEVLAERLSEGSGRFGHRSGALTISALEPMRAIPHKVLVLMGLDAGAFPRQRQ 663 Query: 691 PLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 GF LM Q+ GD S D DRY+ LEAL+SA+Q L +S+ R + S V++ Sbjct: 664 RPGFHLMEQQRLLGDPSSGDQDRYVLLEALLSARQHLLVSWSCRDERTGEPLEASTPVRQ 723 Query: 751 LIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP----GERQSYAREW 806 ID + Q V+ H R F P P +R R+ Sbjct: 724 WIDLLPQ----------------VPVREHAANALERSNFLPSEAWPPASCDQRLLQVRQH 767 Query: 807 LPAASQAGKAHSEF-VQPLPFTLPETVPLETLQRF--WAHPVRAFFQMRLQVNFRTEDSE 863 L A + G A F + P +PL W + + +L + R ++ Sbjct: 768 LDAGTIGGTAGLAFSITPHKSPDGPALPLSAWDDLISWVTAPQKQWLEQLGLRPREHENA 827 Query: 864 IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQE 923 + D E L+ R + +Q L E++ R G LP + G + E Sbjct: 828 VLDLEDLSLDERQRSALLRQELGRDQEENAEPDWLALDRGRGQLPPHSAGAL-------E 880 Query: 924 MQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQV--QPDGLLRWRPSLLSVAQGMQLW 981 QL R + S+ + + V + W ++ + D L+ + Q QLW Sbjct: 881 AHQLEQRWTSLSTCLSSLGEERR-DAVSMGPWQAELSLRDDQLVLVHTARPRSPQRQQLW 939 Query: 982 LEHLVYCASGGNGESRLFLRKDGEW-----RFPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 LE L+ A+G S + + +DG R P +Q L Q + +RE Sbjct: 940 LELLLATAAGSKLRSAVLVGRDGHRFRVLERISPPTRDQCTALLDQ-HQAWREQYQQRCW 998 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGE 1084 LP G W +A+ K +K A+EGN ++ GE Sbjct: 999 PLPPETG-WAFAVGEAKG-----------KGWSKARDAWEGNAVLAGE 1034 >UniRef50_A2C8A0 Possible exodeoxyribonuclease V gamma chain n=4 Tax=Cyanobacteria RepID=A2C8A0_PROM3 Length = 1103 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 290/1141 (25%), Positives = 469/1141 (41%), Gaps = 137/1141 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDP--FEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 ML +Y SNR E L + E+ RL P F+ ++V + ++WL L+ GI+A Sbjct: 1 MLTIYRSNRA---EWLARVLAEQLRLAPPGLFDSVDVVVNTWPTSRWLGEQLASVNGISA 57 Query: 59 NIDFPLPASFIWDMFVRVLPEIPK--ESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT 116 + FP P S + VR++ I E + + W L+ LLPQLLE E+ LR ++ Sbjct: 58 LVRFPFPGSRL-RQLVRMILGIDSDAEDPWRASRLVWPLLDLLPQLLETEEAAPLREWVN 116 Query: 117 DDSDK-----RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPL--- 168 + R +QL+ AD FD Y +YRP + QW G L +Q + PL Sbjct: 117 RQPSRPGHLNRVQWQLARSIADAFDDYALYRPKLIHQWLEGS-DRLLNSSQ--EMPLTLR 173 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 W+ L+ R + L + LPS++ + G+S+L PV ++ +Q Sbjct: 174 WQPLLLRLLAERLNVEPFGIQVHRAVSKLRNGDHPAMALPSQLRLFGLSSLAPVQVELIQ 233 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 AL +++ + PC W R RR + + +E A Sbjct: 234 ALSGLVDVQMFLLTPCPDLWQRC-----------RSRRETLGNEW------TEPA----- 271 Query: 289 SDGEQDVGNPLL-ASWGKLGRDYIYLL-----SDLESSQELDAFVDVTPDNLLHNIQSDI 342 DG + P L A G++G ++ LL S L QE D F P + + Sbjct: 272 -DGFWLLEAPRLEAILGRMGAEFQQLLEGGGESQLGQWQEGDLFA--APATMACESGQEP 328 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPL--DSSITFHVCHSPQREVEVLHDRLLAMLEED 400 LE V+ D+ +PL DSS+ F C R+V+++ D++L D Sbjct: 329 TLLEQLQQQLVS------PDDHQPLRRRQEDSSLQFLACPGQWRQVQLVRDQILQWFAAD 382 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLS 459 P+L PRD++VM ++ ++P + +VF A A LP+ ++DR + S + + + LL Sbjct: 383 PSLEPRDVLVMTPQVNRFAPLLASVFNDAAATGVELPWRLTDRSQQDSPGLTQGMLQLLQ 442 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + R + + LL P + + +++ L + + +G RWG+D + E Sbjct: 443 IAGERLTATALEGLLANPAIQQQQGFSQDDASSLSRCLQRTGFRWGLDAE-----ERGGD 497 Query: 520 GQHTWRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 H+ + L R LLG + S G P+ E GL + LL Q + + Sbjct: 498 ETHSLIWCLDRWLLGLVLPSTPGLAPGGAAPFAE--GLEPAQLAKWWQLLAQFSRQLKEF 555 Query: 579 AQERPLEEWLPVCRDMLNAFFLPD---AETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 + R W+ + + + F A + + + W+ I GA + + Sbjct: 556 RRARTCGAWVELLQGFVEELFGDGGSWAWERQCLLIALEDWRQI-----GADCTLLLEAA 610 Query: 636 LLRDELAQRL--DQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 ++ D L + L D R R G + + L PMR+IP +V+ L+G++ V+PR G Sbjct: 611 VVADVLNEALSADSGRFGHR--TGALTVSALEPMRAIPHRVIVLMGLDADVFPRHRERAG 668 Query: 694 FDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 F L+ Q+ + GD D DRY+ LEAL+S +Q L I++ R R + VQ+ Sbjct: 669 FHLLEQQRQLGDPRSSDQDRYVLLEALMSTRQHLLITWNSRDEHTGECRPAASPVQQ--- 725 Query: 754 YIGQSHYLPGDEALN--CDESEARVKAHLTCLHTRMPFDPQNYQP----GERQSYAREWL 807 ++G+ + DE C E A R F Q QP R AR WL Sbjct: 726 WLGRLQHELSDETFQGLCREPAANPL-------ERSNFLSQGSQPPPSCDRRHFEARRWL 778 Query: 808 PAASQAGKAHSEFV---QPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 + + E L R+ P + + + QV R + Sbjct: 779 DKTLAPPPLALALPLHWSSVSLEASAVISSELLLRWLIAPQLIWLE-QFQVTPREWFDPV 837 Query: 865 PDTEPFILEGLSRYQINQQLL-----------NALVEQDDAERLFRRFRAAGDLPYGAFG 913 D E L+ R+ + +Q L NAL++ +A R+ G LP GA Sbjct: 838 EDLEALDLDEWHRHGLLKQRLSELLGHLPTDENALLQGSEAGDWKHRYAGQGTLPPGAAA 897 Query: 914 EIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLS 973 + E Q Q L +++ P + ++LA +G + W D ++ +P L Sbjct: 898 TLECERLEQRWQHLQATLLSM-GPCSTRRLELA-DGSRQMLW----AGDTVVVVQPGQLK 951 Query: 974 VAQGMQLWLEHLVYCASGGNGESRLFLRKDG----------EWRFPPLAAEQALHYLSQL 1023 M+ WL HL CA+ + + + + G R+ PL AEQA L L Sbjct: 952 SRGVMEGWLSHLQVCANHTLTSATVVVARCGPAAKKDQFEIALRWQPLPAEQAREQLIAL 1011 Query: 1024 IEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRG 1083 +G+S V P SG A Y N+ + + F Q++ G V+G Sbjct: 1012 QALACQGLSQCWPVPPMSGWA-----YANANNKLAG------RGEEAFRQSWSGGFNVQG 1060 Query: 1084 E 1084 E Sbjct: 1061 E 1061 >UniRef50_A5EWC3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWC3_DICNV Length = 1090 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 262/1051 (24%), Positives = 432/1051 (41%), Gaps = 139/1051 (13%) Query: 27 DDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAF 86 DD F I+V S +A +L+ +++K GI+ + W + R+ ++ Sbjct: 26 DDIFAETEIVVPSMAIADYLEHHIAEKMGISCRHRYRFWGEMEWTIIERLSNRSAAQTPL 85 Query: 87 NKQSMSWKLMTLL----PQLLEREDFTL--LRHYLTDDSDKR------KLFQLSSKAADL 134 + ++ W+L + L ++L ED L L HYL S R +L+Q S + A L Sbjct: 86 STTAIHWQLFSWLYAHRAEILADEDHVLAPLLHYLLAPSSARDEQTLPRLWQFSGEQAQL 145 Query: 135 FDQYLVYRPDWLAQWETG---HL---VEGLGEAQAW-----------QAPLWKALVEYTH 177 F YL RPDWL W+ HL + L E W Q LW+ L Sbjct: 146 FTHYLKMRPDWLLTWQQKPDCHLEDIIATLPEMPTWLRQHYDGVFTVQKYLWQQL----- 200 Query: 178 QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 + HR ++F L S P LP+R+F+ +L L LQA G+ E+H Sbjct: 201 -FAEAMEHRQQRIEQFYHRL-SVDDALPALPARLFVFHPFSLTDHMLHWLQAFGQRCEVH 258 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 L Y+ DI D + ++ H+ NA + F S G+ Sbjct: 259 LWLALVSNGYFPDIVDERW-------RQSHT-------------NADEHFRS------GH 292 Query: 298 PLLASWGKLGRDYIYLLSD---LESSQELDAF-VDVTPDNLLHNIQSDILELENRAVAGV 353 L++ +GK RD L LE Q + D +LL +Q+D+ L++++ Sbjct: 293 VLVSRFGKQQRDIFRLCQSHNLLEEIQHITPHSADTAQQSLLQRLQADMRALDDQS---- 348 Query: 354 NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA 413 S PL P D SI H CH R++E+L + L+ L D T DI++++ Sbjct: 349 -------SLTAAPLVPNDDSIRIHGCHGLLRQLELLREELVRWLNADETRQLSDILIVLP 401 Query: 414 DIDSYSPFIQAVF-GSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVL 471 +++S I+ VF S D LP ++ + + +A + L + F L Sbjct: 402 ELESVQDVIRTVFPASGDYDGAVLPARLTGIIDSSAQRLWQAISGIYVLATTPFNRHTFL 461 Query: 472 ALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG--QHTWRFGLT 529 + + + I ++ ++ + +G G + ++LE A G + T + L Sbjct: 462 QWVLQEEVCTAYGIADKAMQRTCDQLIAAGFYRGFEQ---QDLETVADGDARFTLSYALE 518 Query: 530 RMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 R+L G AM A ++++P A + LA + Q++ R + WL Sbjct: 519 RLLSGLAMPQADIWLENIVPEHNIRNDDAAALAVLAQIHQQISTIRVQQKNHTTAQFWLD 578 Query: 590 VCRDMLNAFFLPDAETEA----AMTLIEQQWQAIIAEGLGAQYGD-AVPLSLLRDELAQR 644 R L F T A A TL E + L A D +PL + + + ++ Sbjct: 579 ELRQRLEHDFSAFQTTAAWQLIAQTLTELTEKLQAHHQLTAAAADLYLPLPFILNYIGEQ 638 Query: 645 LDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKR 703 L +++ +G + I + MR++P++++ +G + +P ++A +L++ P+ Sbjct: 639 LSTRQVASE-PSGVITIGRIGAMRALPYRLIAFVGADQEQFPHRIAEQRHNLLTIDAPRL 697 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 763 GD R D+ FL AL SA + Y D+ ER P+ VQEL+DY+ Q+ Sbjct: 698 GDYHREHDELGSFLHALSSAGSHFWCFYTAVDPNDHEERLPAAPVQELLDYLAQNGV--- 754 Query: 764 DEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQP 823 D+ L H H PF + Y R + A W ++ + + Sbjct: 755 DQYL-----------HYHLRHQPNPFHREPY----RTAPAPLWQKVQHHLQQSAPDVLPF 799 Query: 824 LP----FTLPE---TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFIL---- 872 LP FT+ + T+ L + R P R F + +++ D EP + Sbjct: 800 LPESETFTVNQAEKTMLLSQIARDLLKPARTFLRAH-KIDCSVTDVATDILEPLVFDAQS 858 Query: 873 EGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVI 932 +GL R+QI Q LLN D+ F+ LP GA G + Q Q ++ ++ Sbjct: 859 DGLKRWQIYQALLN------DSP----HFQYLPFLPAGAAGHHYHLLQNQRIEAQRAQLF 908 Query: 933 ACRQPGQSMEIDLAC----NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYC 988 C ++ + L NG QI+ LP V+ + + SV WL +L++C Sbjct: 909 ECTGERENTPLQLKTVSFSNG-QISADLPAVEVNKWVSLSARRYSVRSIFSEWLHYLLWC 967 Query: 989 ASGGNGESRL-FLRKDGE--WRFPPLAAEQA 1016 G GE L F K+ +RF PL E A Sbjct: 968 VQTGGGERWLSFAEKEMSVVYRFLPLECETA 998 >UniRef50_D0LXX8 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LXX8_HALO1 Length = 1274 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 219/840 (26%), Positives = 353/840 (42%), Gaps = 130/840 (15%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEM--ILVQSTGMAQWLQMTLSQKFGIA 57 MLR+ +SN + L AL + + R P I+V + + ++++ ++ + G+A Sbjct: 1 MLRLTYSNHFEELCRALCQELAAERRRRRQLLPATAHIVVPNHHITAYVKLAVANQLGVA 60 Query: 58 ANIDFPLPASFIWDMFVRVLPEIPKES----AFNKQSMSWKLMTLLPQ--LLEREDFTLL 111 AN+DF +SFI + +P E + + L+++L LL ++ + Sbjct: 61 ANLDFRFISSFIAEC-------VPDERRDLRVLDTPHLHALLLSVLADEALLAEDELAPV 113 Query: 112 RHYLT------DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA-- 163 YL D D R+ FQL+ + A LF Y + R D L W G LG+ ++ Sbjct: 114 AAYLGAAGGEQDAVDLRR-FQLAQQLATLFSDYRLSRGDLLRAWREG---PALGDTRSAA 169 Query: 164 ---WQAPLWKALVEYTHQL-GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISAL 219 WQ LW A+ + L + R + E + +P V + G S L Sbjct: 170 TEIWQRRLWLAIFDAERGLLARIREETGVHWVHGPELFDEYLIKDLAVPRSVHLIGFSYL 229 Query: 220 PPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD 279 P + + L+ L + I +H+ NPC +W D++ + +L RQ + D F D Sbjct: 230 PWAHHKVLERLSRFISVHVYAFNPCMEFWEDLR-AGWETRLAGRQLKSRKGDAVQLSFED 288 Query: 280 SENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDA-FVDVT-------- 330 ++ P L WG+ GR+ + +L D ++ + DA FVD Sbjct: 289 LDD--------------TPALRLWGRPGRENVRIL-DEQTQCDFDARFVDPAAPEAEDAA 333 Query: 331 ---------------------------------PDNLLHNIQSDILELENRAVAGVNIEE 357 P +LL +Q DIL AG Sbjct: 334 AADAADAASSAESQAAAPDLFAGLGLGAAAAEPPVSLLAALQRDILFRHPARRAG----- 388 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV--ADI 415 + + L D S+ C S QRE+E++ + + +++ DP L DI ++V AD Sbjct: 389 ---APDAPALVAGDRSVQILGCPSIQRELEIIGNEIWSLMARDPGLRFNDIALLVGRADQ 445 Query: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 + Y + VF +PY +D ++EA LL LP RF ++L LL Sbjct: 446 ELYQAHVPGVFAELHG---IPYHFADAAVTGESRMVEALGLLLDLPFGRFTRPELLRLLT 502 Query: 476 VPVLAARF-DITEEGLRYLRQWVNESGIRWGID--DDNVRELELPATGQHTWRFGLTRML 532 P + AR+ D+ + + W GI G D D +E W+ G+ R+ Sbjct: 503 HPAVLARYPDVDPDDWVH---WSERLGIVHGADTRDHAATYIE---RDLFNWQQGIRRLA 556 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ--------ERPL 584 LG M + D S+ L EL L + + R L E+PL Sbjct: 557 LGAFMAGERSGELRPFAMDGSAYLPEELPADLLPSAARFALVARSLIADARYCQQAEKPL 616 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA----EGLGAQYGDAVPLSLLRDE 640 W M++++ P + + ++ A +A +G +Y + LLR Sbjct: 617 ARWRIFFDLMVDSYLAPQNDEDERNLAACREAIATLAGSDIDGRPVRY--RIACELLRAR 674 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 L +L ER LA V + L+PMR IP++VV L G+ +G +P DL + K Sbjct: 675 LG-KLRGER--GELLAHGVTVAPLLPMRPIPYRVVFLAGLGEGHFPASERESPLDLRAAK 731 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 +RGD S R+ DRYLFLE L+SA+++LY+SY+ R + PS +V EL D++ +S Y Sbjct: 732 RRRGDVSPRERDRYLFLETLLSARERLYLSYVSRDERTGETLQPSPVVLEL-DHLVRSGY 790 >UniRef50_Q4FSM9 Possible exoribodeoxynuclease V, gamma subunit n=3 Tax=Psychrobacter RepID=Q4FSM9_PSYA2 Length = 1512 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 225/945 (23%), Positives = 366/945 (38%), Gaps = 230/945 (24%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDP-FEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 M + S+R + L + + +V+ + + P FEP +++V S + WL T++ + GI+ Sbjct: 1 MFTIIQSHRTENL--VDQLLVQYQSKNQPVFEPFIVIVPSMVLGDWLDKTIASRAGISTL 58 Query: 60 IDFPLPASFIWDMFVRVL-----------PE-----IPKESAFNKQSMSWKLMTLLP--Q 101 + + W + VL PE +P+ + + M W+L L Q Sbjct: 59 VRTKFWGQYQWTLMQDVLTRHNAYLLEIDPEAAILNVPEVAVLSPTVMQWRLFGYLTYYQ 118 Query: 102 LLEREDFT-----LLRHYLTD-----DSDKR----KLFQLSSKAADLFDQYLVYRPDWLA 147 L +D T LL + + + DK +++QL+S A +F++YL +R DWLA Sbjct: 119 ALIVKDETHPVNPLLASLIDEPKEGGEQDKAQQDARIWQLASDLARVFNRYLTHREDWLA 178 Query: 148 QWETGH----------------------------LVEGLGEAQAWQAPLWKALVEYTHQL 179 W LVE E + Q LW L HQ Sbjct: 179 LWSHNKPLNVDELIADKDALSLRFDKYARGTPDWLVEHYVELEVAQRFLWSHLFADVHQ- 237 Query: 180 GQPRWHRANLYQRFIETLESATTCPPG-LPSRVFICGISALPPVYLQALQALGKHIEIHL 238 HR + F L+ LP + I I LP L LQ L ++++I L Sbjct: 238 -----HRVTIENTFWSALKDNKANERAQLPKILRIFTIQQLPQTELDFLQRLSQYMDITL 292 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 L NP + +W DI D ++L +R + E RD G+ Sbjct: 293 LHYNPSKLFWADIVDKSWL-------QRQQIINPESVFLRD---------------YGHS 330 Query: 299 LLASWGKLGRDYIYLLSDLESSQEL---------------------------DAFVDVTP 331 LL+ GK RD +L++L +++ D+ DV Sbjct: 331 LLSRLGKQSRDTFAMLANLSGNEQYQDELVEWQDNFENSDDGLNDDFGFSFDDSAYDVDD 390 Query: 332 DN----------LLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPL----------- 370 N LL +Q+D+L L+ ++ V S++ +K+ ++P Sbjct: 391 ANNSQITQNSPSLLRRLQNDVLMLDEQSTQQVTAATVSQAVSKQ-IEPSFDKEKPEMAWY 449 Query: 371 ---------------------DSSITFHVCHSPQREVEVLHDRLLAMLEE--DPTLTPR- 406 D+S++ H CHS QR++EVL + L E P R Sbjct: 450 EDEALENKRFERERFWVSSWQDNSLSIHSCHSLQRQLEVLRIMIGRWLNEPIKPGEKKRH 509 Query: 407 --DIIVMVADIDSYSPFIQAVF--GSAPADRYLPYAIS---DRRARQSHPVLEAFISLLS 459 DI+V++ D++ + I ++F G LP ++ D RQ + F LL Sbjct: 510 ISDIVVLLPDVERHHALISSIFVSGKGQDGLTLPAKVTGVVDADIRQLWEAIIGFYKLLG 569 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 +RF + +VL L +P L F +T E + + E+G G D EL L T Sbjct: 570 SHSARFEAPEVLDWLMLPPLFESFGLTHEQMSRGCDLLVEAGFIRGFD-----ELHLKQT 624 Query: 520 ---GQHTWRF----GLTRMLLGYAMESA----------QGEWQSV------LPYDESSGL 556 +RF L R+ LG M A Q +W S LP + S Sbjct: 625 LDSNDFDYRFSFAQALDRLTLGLVMPEASLSDCLYPLAQDDWPSTTLPEMSLPLPQVSLN 684 Query: 557 IAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQW 616 A +V L + L R Q+ E+WL + + D + M I Sbjct: 685 DAMIVEALCRIYAGLVARRDDHRQKMKAEDWLDQIETEVIHRYFGDVDQTRTMRAIYNAM 744 Query: 617 Q----AIIAEGLGAQYGDA------------------VPLSLLRDELAQRLDQERISQRF 654 ++ A QY A + LS + D + L+ +++S Sbjct: 745 NGFKSSLRANRHYKQYSSADSANKEVEQKLAGVEQLPLKLSFMLDSIESELESQQVS--- 801 Query: 655 LAGPVNICTLM---PMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRD 710 A P + T +R++PF++V +L MN +P + +DLM + +RGDR D Sbjct: 802 -AEPTGVITFGRFGALRNVPFELVVMLNMNLSEFPGRERDNRYDLMKATNARRGDRVSED 860 Query: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI 755 DD FL+AL+ A+ ++ Y G+S+ D E P+ + EL+ ++ Sbjct: 861 DDNGAFLDALLCARSACWMFYNGQSLTDTHEHLPANPISELLQFL 905 >UniRef50_UPI0001699EF8 Exodeoxyribonuclease V, RecC subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699EF8 Length = 196 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 123/195 (63%), Gaps = 11/195 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVER--ERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 M+ YHSNR+ E L++ ++E+ L P E I+VQ+ GMA+WL L+ + G+AA Sbjct: 1 MILSYHSNRM---ERLLDHLLEQLSTPLGSPLGRETIVVQNPGMARWLSQQLALRSGVAA 57 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 N++FPLPASF W+++ L E+P ES F+++S+ W +M LLP LLE+ F L+ YL D Sbjct: 58 NLEFPLPASFTWNIYQAWLGEMPAESGFDRESLHWCIMGLLPGLLEQPAFAALQRYLEGD 117 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQ 178 S + + +QLS + ADLFDQYLVYRP + WE + G + + W+A LW+A+V T Sbjct: 118 SGELRRYQLSGRIADLFDQYLVYRPQMVLAWENSAIETGT-QDEPWKAALWRAIVAQTQA 176 Query: 179 LGQPRWHRANLYQRF 193 HRA L+ RF Sbjct: 177 E-----HRAALFDRF 186 >UniRef50_Q057F6 Exodeoxyribonuclease V, g chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F6_BUCCC Length = 1042 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/408 (20%), Positives = 202/408 (49%), Gaps = 16/408 (3%) Query: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 ++ + ++K+ ++ D+SI+ + C S EV+++++ + LE + + DI++ ++I Sbjct: 292 KKIYKINSKKKININDNSISINQCKSYIHEVQIVNNYIHKTLETNKKIKLDDILITASNI 351 Query: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 D Y P+IQ +F + ++ L + + + +L LL++ ++ F +L+LL+ Sbjct: 352 DIYIPYIQKIFNFS-QNKNLLIKKTGKEEEKKKEILLTIKDLLNIKNNYFKPFWILSLLN 410 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 + +L +F I ++ L + ++ I +G + + +E +P ++W + + R+ G+ Sbjct: 411 IKILRKKFSIKNRDIKTLGKLISHLNIAFGFNKKHYKEFSIPDLKTYSWEYAIKRITSGF 470 Query: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 + + ++ Y+ S+ L+G+ + + QLN R+ + +++ +E+W+ + ++ Sbjct: 471 IFNNKNTIYNNIYTYNISNDKKNILLGNFINFIKQLNKLRKKIYKKKKIEKWINIISIII 530 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 FF + + + L++ W+ I G+ + + + +E + +FL Sbjct: 531 KNFFYIEKKDKKFFFLLKNIWKKNIFYGIKINFLKKISIEFFINEFFKNHSLLYKKNQFL 590 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMND---GVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 +G + + L + IPFKV+C+LG ++ Q D+++ K+ + Sbjct: 591 SGNIKLINLNKINLIPFKVICILGCTQEKISLFNNQ------DILNLIEKKNKNNEN--- 641 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 +FL+ + ++ L++SYI + N + +PS + ++I YI + Y Sbjct: 642 --IFLKTIFLTKKYLFLSYIKNNYIQN-KYYPSKFILDIIFYIKNNFY 686 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/281 (22%), Positives = 140/281 (49%), Gaps = 2/281 (0%) Query: 839 RFWAHPVRAFFQMRLQVNFRT-EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERL 897 FW +P+ FF+ L+VN + E++ + E F ++ L++Y+IN +L ++ + Sbjct: 753 NFWKNPIEYFFKNTLKVNIKNYEENMFIEDEYFSIKPLNKYKINSLILKNMLLNKKTDYH 812 Query: 898 FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLP 957 + F+ LP +I W + +++ L++++ R+ +++ I ++G + Sbjct: 813 IKEFQLKNKLPQEKIAKILWYEKIKKINILSNQIKKIRKFPKNIHIYYKFKKYYLSGKIK 872 Query: 958 QVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQAL 1017 +V L++W + + + W++H++YCA +S L + + F + + A Sbjct: 873 EVNKLNLIQWNVNKIKFKDIITTWIQHIIYCAFEKPKKSILLSTNNKKIEFLSIKKKIAK 932 Query: 1018 HYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEG 1077 YL + I+G+ +G P+L+L SG WL T + + + + + L A+ FL+ + G Sbjct: 933 KYLKKYIQGFIDGHKKPILIL-NSGIHWLHTIFLKKENVLKINKYNLNLAKKNFLKIWNG 991 Query: 1078 NMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + GE +I+ +++ L ++ I + ++LP+F+ Sbjct: 992 SNFFLGEKKNIFIKKIIPILNKNLIKKICNSCKYWILPIFK 1032 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 9/176 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y SN+++ L + + ++ E+ L+++ + +WL++ ++ K I NI Sbjct: 1 MLKIYQSNKINFLLKKICKKIYIKKKKKILINEIFLIENKYVQKWLELYIANKKKINFNI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFN-KQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 F L F+ + F + + K+ K+ + W ++ ++ D + L+ Y Sbjct: 61 KFILLFRFLNNFFKKNNIKKNKKLIIFEKKYLQWIIILII---YNTYDCSFLKKY----G 113 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQW-ETGHLVEGLGEAQAWQAPLWKALVE 174 + K F+ S A++F QY+ ++P + +W + + WQ LW +++ Sbjct: 114 IQYKNFEFCSHIANIFIQYIYFQPHLIYEWENNKKSKKKEKKTYQWQKKLWNLIIK 169 >UniRef50_C8NCI0 Exoribodeoxynuclease V, gamma subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI0_9GAMM Length = 1251 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 194/834 (23%), Positives = 340/834 (40%), Gaps = 94/834 (11%) Query: 28 DPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEI--PKESA 85 DP ++V + + L TL+ + GIAA I L ++ W + R+ + ++ Sbjct: 28 DPLGDTPLIVPTLPVGNILIQTLASQRGIAAGITLRLWHNYEWMLVERITGKSRSSSQAP 87 Query: 86 FNKQSMSWKLMTLLPQLLE-------REDFTLLRHYLTDDSDK------RKLFQLSSKAA 132 ++ W+L + L Q LLR L D+DK R+L+ S + A Sbjct: 88 LGNTAIRWELFSYLYQHGNTILADPGHPQHALLR-GLYPDTDKITHDHTRRLWVYSGQLA 146 Query: 133 DLFDQYLVYRPDWLAQWETGHL--VEGLGEAQAWQ------APLWKALVEYTHQLGQPRW 184 +L+ YL RP+WL+ W+ ++ L + + Q A ++AL + +L R+ Sbjct: 147 NLYSTYLNQRPEWLSAWQNADPPPLDALLKNDSLQQLPPQIADHYRALYQQQSRLWHDRF 206 Query: 185 -----HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 R + F +TL++ + LP + + + L ++ LG + ++ Sbjct: 207 AAIHAERERRRETFWQTLKTRESARRLLPPYIPVFAPTHLHAAEHDFMRRLGNYTDLTHY 266 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 Y DI D +L +L R AG+ S ++ G+ L Sbjct: 267 HLAASDGYIDDIVDSRWLRELKARA------------------AGK--PSGEHREHGHEL 306 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGV------ 353 L+ +GK RD LL + L A P NLL +Q++I EL+ VA Sbjct: 307 LSRYGKQQRDLSRLLHADSDPEPLPA-TPAPPHNLLTALQAEIRELKEDHVAACLAATTL 365 Query: 354 --NIEEFSRS---------DNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 +++ R+ N P D S+ H CHS QR+ E L ++A L DP+ Sbjct: 366 PPSLQSGGRTGRGCENRAATNPDHQTPQDHSLRIHGCHSLQRQCETLRSDIVAWLNADPS 425 Query: 403 LTPRDIIVMVADIDSYSPFIQAVF---GSAPADRYLPYAISDRRARQSHPVLEAFISLLS 459 DI + + D + ++A F G +R LP + + + + + Sbjct: 426 RRLSDIYIHLPDPAAAQTTLRATFPPGGDYDGNR-LPARLIGVTENPAENLWRSLAGRYT 484 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 L + RF + VL L I E ++ + + +G R G D +++ Sbjct: 485 LINGRFDAPTVLDWLHNEDTCHSLGINSEHMQRITAALVAAGYRRGYDGAHLQPTLHTED 544 Query: 520 GQH--TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 H T+ + L R++ G A ++V + + + L LA+L ++ R Sbjct: 545 HDHRYTYTYALNRLIAGVLTPDADHYREAVPQHGLTLADLPALEA-LATLAENMHTLRAL 603 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ----QWQAIIAEGLGAQYGDA-V 632 A+ P + WL R L+ + + A TL + Q Q + L Q + Sbjct: 604 QAENTPAQNWLQHLRATLHDAYTHAHNSPAWQTLDQALDDLQNQLAAHQALAPQNEQHYL 663 Query: 633 PLSLLRDELAQRL-DQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 PL + + + +L DQ+ S+ +G + I +L +R++P K+ L + YP + Sbjct: 664 PLEFILENIENQLADQQNSSEP--SGVITIGSLKNLRNLPGKLHIFLNADHDRYPARQND 721 Query: 692 LGFDLMS-QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 ++L+ KP+ GD +R +D L+ + A L++ Y S DN + P+ VQE Sbjct: 722 ERYNLIHLDKPRPGDNNREHEDLGALLDLINRAGDALWLYY--NSHHDNEPQPPASPVQE 779 Query: 751 LIDYIGQSHYLPGDEALNCDESEARVKAHLTC---LHTRMPFDPQNYQPGERQS 801 L+ Y+ H + A + R+ A T HT P DP +QP ++ Sbjct: 780 LLQYLDDQH----ERASQHLRASGRLDAGQTLPRHYHTEHPADP--FQPDAHET 827 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 81/217 (37%), Gaps = 13/217 (5%) Query: 829 PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT-EPFILEGLSRYQINQQLLNA 887 PE + L + R P A+ + N T P++ EP L GL +Q +Q ++ A Sbjct: 964 PENLTLAQIVRDLQKPASAYARAHHIAN--TAAQTPPESREPLALYGLDNWQADQHIIAA 1021 Query: 888 LVEQD-DAERLFRRFRAAGDLPYGAFGEIFWE----TQCQEMQQLADRVIACRQPGQSME 942 L + D R A P G G+I E T Q L DR P + Sbjct: 1022 LEQNHPDPATHIARLPA---YPGGISGQIQLEQRLATYRARQQTLLDRADLATWPTLREQ 1078 Query: 943 IDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRK 1002 +T LP P R S + WLEHL + A+G +G + + Sbjct: 1079 TLNLGEHSSLTALLPAHSPT-WPRLSASRAKPKHHARYWLEHLAWNATGAHGTTLIHYAD 1137 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLP 1039 D R PL A A L Q + RE + L + P Sbjct: 1138 DTLLRLAPLPAADAQRQLHQWL-AVREHLQKNLWLAP 1173 >UniRef50_C9RQA7 Exodeoxyribonuclease V RecC subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQA7_FIBSS Length = 1256 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 235/1021 (23%), Positives = 385/1021 (37%), Gaps = 187/1021 (18%) Query: 28 DPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFN 87 +PFE ++ + QW ++ QK F M R L EI + Sbjct: 40 NPFEAPAVIFPDPKLEQWFRLKWVQKKKSL--------IGFKSMMIDRFLMEILIGDDTH 91 Query: 88 KQSMSWKLM--TLLPQLLE---------REDFTLLRHYLTDDS-DKRKLFQLSSKAADLF 135 KQ + +++ +L L++ R D + R+ + D + D+ LF +SK A LF Sbjct: 92 KQKLHAEMLRNVILAHLVKETDGVPNYMRMDDEVKRYLVIDRTLDETHLFDFASKMASLF 151 Query: 136 DQYLVYRPD-------------WLAQWETGHLVEGLGEA-------QAWQAPLWKAL--- 172 +Y RP L +W+ HL + G A +AWQ L+ A+ Sbjct: 152 LEYETSRPKDFIRRADGSSAPGILEKWKQDHLDDFFGIANHDIAKREAWQRELYSAIFHE 211 Query: 173 --------------------VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVF 212 +E T L P ++A + T + L F Sbjct: 212 HQGKPSLLTEVFENEAKRKGIERTEYLTIPYLYKACQDDKGNVTFHTEHIGNTPL----F 267 Query: 213 ICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRH----- 267 I G+ + Y LQ + +++ NPC +W D + R + Sbjct: 268 IFGLGGMGQFYRVILQKYAETHDVYAYIQNPCMEFWEDTSTVHDQNANIHRNWKSRDGQW 327 Query: 268 -----SFEDRELPLFRDSENAGQLFN-------SDGEQDVGNPLLASWGKLGRDYIYLLS 315 S +D + D NAG+ + S+ E + N LL +WG+ GRD I L Sbjct: 328 KDNGTSLDDVREKMSVDYSNAGESTDVDDISEYSNEEAEAENTLLCNWGRSGRDNIKLWC 387 Query: 316 -----DLE---SSQELDAFV--DVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKR 365 D + S +E D D+ D LLH +Q I N + F+ SD K Sbjct: 388 QAVNYDFDFSMSGREDDNRTAQDLPQDTLLHKVQYAIANRIN------TLPNFTASDCK- 440 Query: 366 PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 D S+ + RE+E LH + ++++ + DI+V+ +D Y I+ + Sbjct: 441 ---ARDFSLDITAAPTKIREIEALHTNISKLMQKGARVN--DILVVSPALDDYRTAIKTI 495 Query: 426 FGSAPADR------------YLPYAISDRRARQS--HPVLEAFISLLSLPDSRFVSEDVL 471 F P + ++P+AI D AR S VL+ ++L Sbjct: 496 FDQTPEKKKYAGENEKEGFLHIPFAIVDSPARSSLTENVLDNLFTILE--QGTITRPTFF 553 Query: 472 ALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRM 531 LL PV+ IT+E + W+ + I R+ E + W G+ R+ Sbjct: 554 ELLRNPVVQLTRHITDEDVSNWESWIEATNI--------YRDRE---QKKEDWMSGVRRL 602 Query: 532 LLGYA----MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW----------RRG 577 LL +E + GE+ LPY + + + + L W + Sbjct: 603 LLAKMTKNPVEFSDGEF---LPYADMATSDNSSLCKFVECIESLKKWMEFAGCKQNVKHE 659 Query: 578 LAQERPLEEWLPVCRDMLNAFF----LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP 633 + E +E +C D +N + PD + ++ Q+I EGL Q DA Sbjct: 660 IVCENRIENLDKLC-DFINEWLSMASSPDGFASERI-IVNDVTQSI--EGLRNQM-DAGL 714 Query: 634 LSLLRDELAQRLDQERISQRFLAGP--VNICTLM---PMRSIPFKVVCLLGMNDGVYPRQ 688 S+ + Q L S + G VN T M P R IP K + +G + +P Sbjct: 715 QSISWKVVKQTLLNAAQSSAYSCGSLFVNGITFMNFIPNRIIPVKHLFFIGGDSMNFPGA 774 Query: 689 LAPLGFDL-MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 DL S +P GD S RY FL L+S + +ISY+ + I+ ++E +P+ + Sbjct: 775 KQQNTLDLRKSCRPWPGDDSPIAKRRYAFLCQLMSTSESFHISYVNQDIRKDAELYPTSV 834 Query: 748 VQELIDYIGQSHYLPGDEAL-NCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREW 806 V ++ ++ + D + +S+A + ++ TR F+ Q R A Sbjct: 835 VNDIRKFLVNAVNSKTDVSNEKVSQSDAWPENKISLDETR-SFEDLFTQKSLRNKRA--- 890 Query: 807 LPAASQAGKAHSE--------FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFR 858 Q G AH+ + LP+ V + L F P FQ R+ Sbjct: 891 FLNMMQDGYAHANPETDAIESASNNITAKLPDRVSIYMLSSFLKDP----FQFRISQMLA 946 Query: 859 TEDSEIPDT---EPFILEGLSRYQINQQLLNALV--EQDDAERLFRRFRAAGDLPYGAFG 913 DSE P+ EP L+ L + + + L A + + D+ E+ + + G P G FG Sbjct: 947 DSDSEDPEKEMFEPVQLDALKKSTLLKMTLAAELSNKSDELEKFKKESKLKGGTPDGIFG 1006 Query: 914 E 914 + Sbjct: 1007 D 1007 >UniRef50_C8PVF1 Putative exoribodeoxynuclease V, gamma subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVF1_9GAMM Length = 1524 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 132/512 (25%), Positives = 225/512 (43%), Gaps = 95/512 (18%) Query: 369 PLDSSITFHVCHSPQREVEVLHDRLLAMLE-EDPTLTP-------------RDIIVMVAD 414 PLD+SI HVCHS R++EVL ++ L D TP DI+V++ D Sbjct: 514 PLDTSIAIHVCHSMVRQLEVLRSMIIGWLNYSDMQATPAQIPTDPWDRRALSDILVLLPD 573 Query: 415 IDSYSPFIQAVF-GSAPADRY-LPYAISDRRARQSHPVLEA---FISLLSLPDSRFVSED 469 I+++ I+A F D Y LP ++ A+ + + +A + +LL+ +RF + Sbjct: 574 IETHQNIIEATFPKHVGGDGYQLPAKVTGVVAKDINLLWQAITGYYTLLNRAGARFQRSE 633 Query: 470 VLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG--QHTWRFG 527 V L + L F + E + + ++G G D+ ++++ A ++T+ + Sbjct: 634 VFDWLMLAPLYESFGLNLEQMTRACDLLTQAGFIRGFDELHLQQTLSAADDDYRYTFAYA 693 Query: 528 LTRMLLGYAMESAQ----GEW-------QSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 L R++ G M A GE+ + +P + A++V L + L+ R Sbjct: 694 LERLVAGVMMPKATVVSFGEYTNSFGVVEKFVPLTNLTMADADIVAVLCDIYETLDDNRH 753 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA------EGLGA--QY 628 + L +WL ++ F +T A W+AI A E + A +Y Sbjct: 754 LGNDVKTLPDWLTQIEKLIQQKFSLFNQTNA--------WRAIFAAQNDLKENIEANSKY 805 Query: 629 GDAVPLSLLRD-----ELAQRLDQER----------------ISQRFLAGPVNICTLM-- 665 V + ++ E Q++D E I+Q+ A P + T Sbjct: 806 LATVKIKTAKNPNPATEPVQQIDTENLPLKLTFVLENIAQSIINQQVSAEPSGVITFARI 865 Query: 666 -PMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK-PKRGDRSRRDDDRYLFLEALISA 723 +RS+P+K+V +L +N +P+Q ++LM P RGDR R DDD FL+AL+ A Sbjct: 866 GSVRSLPYKLVVMLNLNLSEFPKQEQQNRYNLMQAGLPIRGDRFREDDDLGAFLDALLCA 925 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL---NCDES-------- 772 +Q +I Y G+S D E P+ VQEL+D++ + + D+ + N D++ Sbjct: 926 KQACWIFYNGKSTTDTHEHLPASPVQELLDFL--QNRMASDDVIIDPNNDQNSLSNNSQN 983 Query: 773 ---------EARVKAHLTCLHTRMPFDPQNYQ 795 E VKA+L H +PFD ++ Sbjct: 984 PPNPQSTNFEQWVKAYLVTHHAALPFDKSYFE 1015 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 102/452 (22%), Positives = 171/452 (37%), Gaps = 120/452 (26%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN++D L + L+ FEP ++V S M +WL+ ++ K GI+ Sbjct: 1 MLTIIQSNKVDKLFDHLLNAYKNPSYQGSIFEPFQVIVPSKVMGEWLKKQVADKAGISTL 60 Query: 60 IDFPLPASFIWDMFVRVLP------------EIPKESAFNKQSMSWKLMTLL-------- 99 + + + RVL ++P+ + +K M W++ L Sbjct: 61 VTTEFWGRYFLGLMQRVLRTYARISEDDDILDVPEVAMLSKNVMQWQIFGYLTQYRQAIV 120 Query: 100 --------------------------------PQLLEREDFTLLRHYLTDD--------- 118 P +++ + + L++D Sbjct: 121 EQPQHPLYPFLSPLVEDKEADSPNTTGFAPDTPAIVDSLSWANNQSLLSNDVISQSADLQ 180 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV----------------EGLGEAQ 162 + ++++QL+S A++ ++Y+ YRP WL+ W V G + Sbjct: 181 TQDQRIWQLASDMANMLNRYMTYRPQWLSNWGQDKPVAVSDMIAKKDALHNRLNGRDASN 240 Query: 163 AWQAPLWKALVEYTHQLGQPR---WH---------RANLYQRFIETLESATT-----CPP 205 A P W LVE+ QL + W R L+ +F + L + T Sbjct: 241 AIDTPDW--LVEHYEQLEAAQRFLWRQLFDDDYRFREQLHNQFWQALNHSDTRIRNISRS 298 Query: 206 GLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQR 265 LP VF+ + LPP L LQ LG ++ +L NP +W DI D +L ++ Sbjct: 299 KLPKHVFLFTLQQLPPTELLDLQRLGVLTDVTILHFNPSEQFWADIVDKNWLMQM----- 353 Query: 266 RHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE--- 322 ED +A L +D G+ LL+ +GK R+ +L+ L ++ Sbjct: 354 --QMEDDA-----SKHDAWYL------KDYGHTLLSRFGKQSREVFAMLASLSGNEYEHV 400 Query: 323 --LDAFVDVTPDNLLHNIQSDILELENRAVAG 352 D F + P+ LL IQ DIL LE A Sbjct: 401 LWQDDFDNTPPNTLLEFIQHDILMLEEVATTA 432 >UniRef50_A2BX92 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=7 Tax=Prochlorococcus marinus RepID=A2BX92_PROM5 Length = 1060 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 165/851 (19%), Positives = 345/851 (40%), Gaps = 126/851 (14%) Query: 1 MLRVYHSNRLDVLEALM--EFIVE----RERLDDPFEPEMILVQSTGMAQWLQMTLSQKF 54 ML +Y+SN+++V+ L+ E I+ E+LD I V + + +WL ++ Sbjct: 1 MLNIYNSNKIEVISQLLAKELIISPPLITEKLD-------IAVPNYFLGKWLWNEITVSN 53 Query: 55 GIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHY 114 I+A + +++ + + PEI +N +S+ W ++ +L ++ +R++ Sbjct: 54 QISALYELKTISNYTETLLTNLFPEIDM-GVWNFESIKWGIIDSFEELDSYKESLPIRNW 112 Query: 115 LTDDSDKRKL-----FQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAW 164 + + +K+ + L+ K A+ F YL++RP+ ++ W + +L L + W Sbjct: 113 INKFLNNKKIIDGDIYNLTKKIANNFIDYLIFRPEMISNWHKYDLNSQNLFNNLNSNEYW 172 Query: 165 QAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYL 224 Q L+K L Q P I+ ++ +P ++I + L +++ Sbjct: 173 QPILFKLL-----QKKMPEKPSCLYMIEVIKNIKKLQNYKNKIPKCIYIISDNNLSRLHV 227 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG 284 L + +++L + W R +S E F EN Sbjct: 228 DFYSKLAEFTKVNLYLLSVGDNLWN---------------RINSIEGE--VDFGGIENKL 270 Query: 285 QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELD-----AFVDVTPDNLLHNIQ 339 L N+ E +GK G +Y L+ + + ++++ ++D T ++ Sbjct: 271 YLNNASIE--------GIFGKFGANYQKLIEETSNIEDINLNTKSIYIDPTINSSRKKDV 322 Query: 340 SDILELENRAVAGVNIEEFSRSDNKR---PLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 I +++ R + DNK+ ++ D SI F + ++E + ++++ + Sbjct: 323 PLINQIQKRLI-----------DNKKYDFIINERDDSIIFRGHFNQLSQLEFVRNKIIEI 371 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFI 455 LE + DI ++ PF++ +F + + + LPY + S + + Sbjct: 372 LETCEEIKYSDIAIVSPQTGLIKPFLKYIFNNELINGQKLPYFFIEGDYEDSSNIYNFLL 431 Query: 456 SLLSLPDSRFVSEDVLALL--DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 ++ L + E + L D FD+ E+ L +N+ G WG+D + Sbjct: 432 NITQLAGEKITLEKIEYFLSQDFTQNIFNFDMKEKEEIIL--LLNQVGFHWGLDSN---- 485 Query: 514 LELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA--SLLMQL 571 E +++ + + R++LG L YD+ I + + ++ + L Sbjct: 486 -ERLGEEKNSLEWCINRIILG-------------LIYDKEFNFINNNLKSFSPKNISLDL 531 Query: 572 NIWRRGLAQERPLEEWLPVCRDMLN--------AFFLPDAETEAAMTLIE--QQWQAIIA 621 N W + L + L+E++ + R + + L D +E ++ + Sbjct: 532 NKWVKILIK---LKEYINLLRGSFSYSVWVKKIKYILNDVNDFHQNFYLEICDLYRVMNN 588 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMN 681 + Q + L++ R+ L ++ + + + + +R IP + L+ MN Sbjct: 589 YSISYQSDQIIVLNVFREILISCINNSKYKNESYINKILVSDIEKIRLIPRNTIFLINMN 648 Query: 682 DGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSE 741 + YPR +++++K GD S D ++Y FLE LIS +++L +S++ +DN + Sbjct: 649 NVYYPRLTIKENINILNKKYSLGDPSVFDREKYFFLELLISCRKQLIVSWVNND-KDNKK 707 Query: 742 RFPSVLVQELIDY------IGQS----HYLPGDEALNCDESEARVKAHLTCLHT----RM 787 S ++ELI+Y I Q Y D+ E +H T + Sbjct: 708 LDISYPIKELINYFESFLTIKQRKSIIKYFDYDKQQFSKTEENTFTSHYTLIDKIDWEEK 767 Query: 788 PFDPQNYQPGE 798 FD +N++ E Sbjct: 768 KFDCKNFKLSE 778 >UniRef50_C1RHS2 Exonuclease V gamma subunit n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RHS2_9CELL Length = 543 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 122/466 (26%), Positives = 196/466 (42%), Gaps = 32/466 (6%) Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 L RL F G + +C+L PMR++P +VVCLLG++DG +PR AP G D++++ Sbjct: 44 LEPRLGGRPTRAGFRTGALTVCSLEPMRAVPHRVVCLLGLDDGAFPRAGAPDGDDVLARD 103 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 P G+R RR +DR LFL+A+ +A L + + G + + R P+V V EL+D + Sbjct: 104 PLVGERDRRAEDRQLFLDAVTAAGDHLVVVHSGADERTGAPRPPAVPVGELLDAV----- 158 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ-----SYAREWLPAASQA-G 814 DEA+ + + L H D +N+ PG S+ AA+ A G Sbjct: 159 ---DEAVAFADGRTS-RGALVVHHPLQTVDERNFAPGALGRPGPFSFDVVDRDAATVARG 214 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWA---HPVRAFFQMRLQVNFRTEDSEIPDTEPFI 871 H P P+ L A HPVRAF + RL V E ++ D P Sbjct: 215 PRHPRPPLLTAPLPPLDDPVVDLDDLVAALEHPVRAFVRRRLGVLVPGEVDDLDDRLPLT 274 Query: 872 LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAF-GEIFWETQCQEMQQLADR 930 L L + +LL A+++ D R R G +P G G + + Sbjct: 275 LAPLDGWAAGDRLLAAVLDGVDLTRAAAAERRRGRVPPGNLGGAALADVATRVAAVAEAA 334 Query: 931 VIACRQPGQSMEIDLACNGVQ-ITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA 989 P ++++ + G + +TG +P V D L+R + L ++ W+ L A Sbjct: 335 APVLGAPATTVDVTVPLPGDRTLTGTVPGVHGDVLVRAVYARLGAKHRLRAWVRLLALAA 394 Query: 990 SGGNGESR---LFLRKDG-------EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLP 1039 R R G W PP + A L++L+ + APL + Sbjct: 395 DPDGPPVRGAATVGRGPGTRPTAATSWLTPP-EPDDARRLLAELVTVRDRALCAPLPLPV 453 Query: 1040 ESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEG 1085 + G + + + A D+ Q R ++ E +++ G+G Sbjct: 454 AAAGTYAHRRHGNDDPAGALADAE-QALRDRYEHTDEYHVLAWGDG 498 >UniRef50_Q6A851 Exodeoxyribonuclease V gamma chain n=3 Tax=Propionibacterium acnes RepID=Q6A851_PROAC Length = 1049 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 140/607 (23%), Positives = 232/607 (38%), Gaps = 86/607 (14%) Query: 373 SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM---------------VADIDS 417 ++ H CH R+ EV+ D + A L + PTL PRDI+V+ +ADID Sbjct: 289 TVEIHQCHGVDRQAEVVRDVVCAALADYPTLEPRDIVVICCGRQDTAHLLSAGTLADIDH 348 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 P Q F + P ++ +PV EA ++L L SR +D+L+L +P Sbjct: 349 --PAHQLRFTTPPQREHV------------NPVTEAVTTILGLASSRATGQDLLSLCAMP 394 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + RF +++ + + V+++ IRWG+D + L Q TW G+ RM+L AM Sbjct: 395 AVQTRFGFSDDDQEAIERLVSQADIRWGVDPAARDKAGLGRIKQSTWLAGIERMILAIAM 454 Query: 538 ESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 S + +V P + LVG LA + ++ P+ W +++ Sbjct: 455 SSTPPTYLGTVTPITDVGSTTIPLVGKLAEFVSRMRKAFLDTETPAPIATWKRRVSQIVD 514 Query: 597 --AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD----QERI 650 A DA A TL + GL G A R E+ L+ R Sbjct: 515 NLAAAPADAPRSALQTL-------ALLTGL---EGVAEDREFDRQEIIDLLNWLSGIHRG 564 Query: 651 SQRFLAGPVNICTLMPMRSIPFKVVCLLGMN-DGVYPRQLAPLGFDLMSQKPKRGDRSRR 709 + G + +C + + +VV ++ + + V+ A L L + ++R+ Sbjct: 565 RHSWFDGSIQVCRPGELTPVDHEVVIVVDPDQEAVH----ADLLQGLRDENLDPAAKARQ 620 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 D L+ +SA+ L + RS N P + L +AL Sbjct: 621 D-----LLDVALSARTLLVVVRQARSPVSNLTVLPGPFTRTL------------SQALKA 663 Query: 770 DESEARVKAHLTCL-HTRMPFDPQNYQPGERQSYAREWLPAASQAG-------KAHSEFV 821 + R C+ H PF + +++ AA+ AG + H + Sbjct: 664 QSATPR------CVKHGLQPFSADEFSHHSDTAWSGFDNTAAAAAGCHPGSQPRPHRVVL 717 Query: 822 QPLPFTLPET-VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQI 880 P+ LPE+ + L L +HP R + R +++P P L +Y I Sbjct: 718 PPV-AKLPESRMSLIDLTLALSHPARTLLRARAGAPANERSTDLPVDLPLAPSSLDKYWI 776 Query: 881 NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR--QPG 938 ++L L + R G P G G+ ++ Q+ R R Q Sbjct: 777 RSRILADLEHGFLLDDAINAERLRGSTPPGHLGQHIVTKLAEDAMQICQRANRLRGDQDE 836 Query: 939 QSMEIDL 945 Q +EID Sbjct: 837 QFIEIDF 843 >UniRef50_Q04UR0 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Leptospira RepID=Q04UR0_LEPBJ Length = 1131 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 127/586 (21%), Positives = 238/586 (40%), Gaps = 67/586 (11%) Query: 371 DSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA- 429 D+S+ F SP RE+E + +L + +D LT D ++V D+ Y P ++ VF Sbjct: 320 DASVRFWNAPSPYREMESAANDILYRINQDHRLTYLDFAILVTDMRVYRPAVEWVFDGGI 379 Query: 430 ---------PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE-DVLALLDVPVL 479 P + +PY+++D +A ++ + + + + + +L L P+L Sbjct: 380 LLQTKADADPIRKKIPYSLTDIKANEASLLYRGLMDFWEICSGNSIDKRSLLKFLRNPLL 439 Query: 480 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 539 + E L L + ++ SG+++ +++ RE + R L+ +L + E+ Sbjct: 440 HSNIRSNSESLSILEKLIDTSGVQY---EESGREKDSFQISNGLKRIRLSSIL---SQET 493 Query: 540 AQGEWQSV---LPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 A +++ L DE S L+ + + + G R ++L R L Sbjct: 494 AWTKYKIAPIFLESDEHSFLLTNFWETVLKAKNDILSFSEG-KTIRWTPDYLKTVRASLE 552 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ-YGDAVPLSLLRDELAQRLDQERISQR-- 653 F + E L Q W + E G + + +SLL+ Q DQ I R Sbjct: 553 ELFEFPGKYEQEGKLF-QNWSESLLEWEGIRLHNKEEGISLLKFVTEQTFDQ--IPYRKG 609 Query: 654 -FLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 +L G V I L PMR +PFK + +LG+ +G +P +L + D S R+ Sbjct: 610 AYLTGGVTISLLQPMRPLPFKHIYILGLGEGKFPGSNDRSQLNLRKDFREEWDISHREIQ 669 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 L E + SA++ L +SY+G+++Q++ P SH E+L ++ Sbjct: 670 ESLLWETIHSAKESLTLSYVGKNLQEDKTFEPC------------SHLFEIMESLQIKKA 717 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPG-ERQSYAREWLPAASQAGKAHSEFVQPLPFTLPET 831 V+ L + + + G + R W+ F P + Sbjct: 718 ---VELPLHSYSIKYKHTSEELKQGLVSYDFGRVWVNGNRNDYTILDRFQNPKELAKTSS 774 Query: 832 VPLET------LQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL 885 PL + L +F + P+ + + +L + E+S + E F L+ ++ I ++ + Sbjct: 775 TPLSSGIDVKELSQFLSDPLDTYLKRKLGMYLEEEESSDYEKEIFDLDAIAETSILRK-V 833 Query: 886 NALVEQD---------DAERLFRRF-------RAAGDLPYGAFGEI 915 +AL+ D D E++ + R++ P FG+I Sbjct: 834 HALMVPDLVSKESWSWDREKILQVLSPILEMERSSAKFPRSVFGKI 879 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 43/233 (18%) Query: 24 ERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID-----------FPLPASFIWDM 72 ER + P +I+V ST M WL + LS+ G++AN+ F L A+ +D Sbjct: 25 ERKNSPLHSPVIVVPSTNMKLWLNLNLSRFSGLSANLRFLYLEKALEEYFHLRANLDYDP 84 Query: 73 FVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAA 132 F R P ++++ K++T L + + ++ LR +L + + + F LS+K Sbjct: 85 FQRAFP--------SREATQRKILTFLIENVNSKETIFLRSFLENIT---RAFSLSAKLT 133 Query: 133 DLFDQYLVYRPDWLAQW--ETGHLVEGLG----------EAQAWQAPLWKALVEYTHQLG 180 L+ Y + R W+ W E G + + E +Q L++ + + + Sbjct: 134 SLYKDYELNRSSWIQSWAKEKGIDIPMISRRPSPFPQEDEYYRFQKVLYQKVFLNSKEPN 193 Query: 181 QPRWHRANLYQRFIETLES-ATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 L Q F++ ++ T P PS C +S L YL L++L + Sbjct: 194 -------TLVQFFLKEIQKDKTHSPRNFPSLHLFC-LSNLADTYLGILESLSQ 238 >UniRef50_B0SIS7 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS7_LEPBA Length = 1099 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 89/410 (21%), Positives = 168/410 (40%), Gaps = 48/410 (11%) Query: 375 TFHVCHSPQ--REVE-VLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA-- 429 T V ++P RE+E + HD L + L+ D ++V + + Y I+ VF Sbjct: 311 TVRVWNAPSEYREMESIAHDILHKISTSKGNLSLLDFAILVPNTNDYKAAIEWVFHGGIY 370 Query: 430 --------PADRYLPYAISDRRARQSHPVLEAF-ISLLSLPDSRFVSEDVLALLDVPVLA 480 P + L Y++SD A+++ + + F I S + R ++++ LL P++ Sbjct: 371 TTQRIDETPTLQRLNYSLSDLVAKETSLLYKVFEILFQSFLNKRIQKDELIHLLQNPLIT 430 Query: 481 ARFDITE-EGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 539 + I + + Q ++ G + D+N E +T FG+ R +L M Sbjct: 431 GKNKIDSIDQTHSVIQLLDSLG---SLYDENKEE------NPYTISFGVKRAVLS-VMSD 480 Query: 540 AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER---------PLEEWLPV 590 W + G+I + + S+L IW + + P+ E Sbjct: 481 EATTWSHM-------GVITDPLAKEDSVLYLNLIWEEIKSLQSFFESEFLQLPINERFKA 533 Query: 591 CRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP----LSLLRDELAQRLD 646 + N F ETE + +W IA+ ++ L L +E+ + Sbjct: 534 FQTKWNQFLKFSEETENERIYL-TEWLGNIAKWCDTEWNHVTDFLQFLQLQTEEIFSNIP 592 Query: 647 QERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR 706 ++ +L + I L PMR IPF + ++G+ +G +P F+L K D Sbjct: 593 TQK--GNYLTEGITISLLQPMRPIPFSHIYIVGLGEGKFPGSKDVSRFNLRKNDSKPWDL 650 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 +R + L E ++SA+ + SY+G++ ++ E P + E++ +G Sbjct: 651 NRIEIQESLLWETILSAEDSITFSYVGKNTLEDKEFEPCSSLFEVMHSLG 700 >UniRef50_A2PDE9 Putative uncharacterized protein (Fragment) n=1 Tax=Vibrio cholerae 1587 RepID=A2PDE9_VIBCH Length = 247 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 24/214 (11%) Query: 911 AFGEIFWETQCQEMQQLADRVIA--------CRQPGQSMEIDLACN------GVQITGWL 956 A G+ W E+ Q A + +A C QP EIDL V + GWL Sbjct: 18 AQGKCRWRRWRSELAQSAQQALALAEKIGFLCHQPLDDEEIDLRLQPFDDGREVLLRGWL 77 Query: 957 PQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRL--FLRKDG--EWRFPPLA 1012 + GL+R R + + W++HL ASG + L + RK+G PPL Sbjct: 78 VKRYQSGLVRARSGAIRSEDLLAAWIDHLCLAASGKAVTTHLIGYERKEGVQHQMLPPLN 137 Query: 1013 -AEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKF 1071 A+QA LS+L+ + +GM+ PL P++ A ++ + + +D +K+ K Sbjct: 138 DAQQAKALLSELVALFCQGMNQPLAYFPKTALACVEAGF---SRGKWQEDE--EKSYKKM 192 Query: 1072 LQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAI 1105 + + + ++GEG + + R+W Q + E + + Sbjct: 193 VDTFNDSFYIKGEGGNRYIARIWPQWSDELAKTL 226 >UniRef50_Q8ERW6 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Oceanobacillus iheyensis RepID=ADDB_OCEIH Length = 1166 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 116/522 (22%), Positives = 210/522 (40%), Gaps = 76/522 (14%) Query: 376 FHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYL 435 F H P+ EVE + ++L ++ D RDI +++ + Y I+ +F D L Sbjct: 317 FEAVH-PRAEVEGIAQQVLELIR-DNRYRYRDIALLIRQPEVYHDLIETIFN----DYEL 370 Query: 436 PYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD---VPVLAARFDITEEGLRY 492 P I ++R HP++E S+L + + ++ + +L +P F +T + + Sbjct: 371 PVFIDEKRPMLHHPLIELIRSILEVVQGNWRNDAIFRVLKTGLIPSADDEFPLTMDSIDQ 430 Query: 493 LRQWVNESGIR----WGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVL 548 L +V E GIR W G++ W++ R A + E Q + Sbjct: 431 LENYVIEFGIRSRHQW--------------IGENKWKYQRFRGFDSSAQTDRERELQESM 476 Query: 549 PY--DESSGLIAELVGHL--ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAE 604 D+ IA + L A+ + L I +E + + L V R + LP+ Sbjct: 477 NRYRDQVISAIATVDEQLRAATTVKDLCIAMYQWLEELKIPDQLEVTRKYYDDQGLPEKG 536 Query: 605 TEAAMTLIEQQWQAII------AEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 E EQ W A+I E G + D + D + L + Sbjct: 537 REQ-----EQVWDAVIQLFDEMVEIAGEEKMDLSVFQVALDAGIETLQFSHVPPSM--DH 589 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD------LMSQKP-KRGDRSRR-- 709 + + T+ R + LLG+N+G++P + G L+ Q K D S R Sbjct: 590 IIVGTIDRSRMSNIRCAFLLGVNEGIWPMKPTSDGMIDEAERLLLEQNGLKLADTSERQL 649 Query: 710 -DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI--GQSHYL---PG 763 DD Y++L A A+ +L ISY+ S ++ + PS L+ + + ++H L P Sbjct: 650 LDDWFYMYL-AFTVAKDRLKISYL-LSDEEGKAKMPSQLIHRVEELFPATKNHILLQDPE 707 Query: 764 DEA-----LNCD-ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAH 817 DE+ ++ + +S + + A L P DP ++ +W G Sbjct: 708 DESNTRRFVSTELKSRSALTAQLAKFKKGYPIDPIWWE-------VYQWYVEHHPQGGTT 760 Query: 818 SEFVQPLPF-TLPETVPLETLQRFWAHPVRAFFQMRLQVNFR 858 +Q L + PE++ +T+++ + ++A RL+ +R Sbjct: 761 HRVLQGLHYENKPESLQKDTVEQLYPKRIQASVS-RLETYYR 801 >UniRef50_A4J4E2 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Desulfotomaculum reducens MI-1 RepID=ADDB_DESRM Length = 1155 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 93/419 (22%), Positives = 159/419 (37%), Gaps = 107/419 (25%) Query: 364 KRPLDPLDSS--ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPF 421 + PL D++ ++ C + + EVE ++ + E+ L+ RDI+V++ D+ +YS Sbjct: 299 RHPLQASDAAQGVSLVACANRRAEVEAAAREIIRLCREE-ELSWRDIVVVLRDLTNYSDL 357 Query: 422 IQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAA 481 I +F D +P I ++R HP++E S L + + + V L ++ Sbjct: 358 INTIFN----DHGIPVFIDEKRNVLHHPLVELIRSALEVITQHWAYDPVFRYLKTDLIPV 413 Query: 482 RFD--------ITEEGLR-----------YLRQWVNESGIRWGIDDDNVRELELPATGQH 522 + D + G+R Y RQ+ G IDD+ +L + Sbjct: 414 QRDDVDRLENYVLAHGIRGNRWNDNRDWTYRRQYT--LGEDCDIDDNEAEQL----AQLN 467 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 R+ + ++ + A + G + ++ L LL L++ R Sbjct: 468 VVRYAAIEHINNFSKKVA------------NCGNVRQITTALFELLESLSVAER------ 509 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 +E W E E A LIE + A I + + LL DE+ Sbjct: 510 -MEAWA--------------KEAEVAGRLIEAKEHAQIWDN----------VILLLDEIV 544 Query: 643 -----QRLDQERISQRFLAG--------------PVNICTLMPMRSIPFKVVCLLGMNDG 683 Q L+ E Q AG V + TL R+ K +LG++DG Sbjct: 545 EAMGEQELNLEEYLQVLEAGLESLKLGLIPPGLDQVVVGTLERSRNPNVKAALVLGISDG 604 Query: 684 VYPRQLAPLGFDLMSQKPKR-----------GDRSRRDDDRYLFLEALISAQQKLYISY 731 V P + P+ L S + G R + D++YL AL A +L++SY Sbjct: 605 VLPAR--PVEEGLFSDYEREALREIGLNLAPGARRKLFDEQYLIYTALTRASSRLWLSY 661 >UniRef50_B7J2J0 Exodeoxyribonuclease V, gamma chain n=26 Tax=Borrelia RepID=B7J2J0_BORBZ Length = 1079 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 6/219 (2%) Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLL-AMLEEDPTLTPRDIIVMVADIDSYSPFI 422 K P+ LD S + +REVE+L ++++ +M + + L+ I + + Y P+I Sbjct: 282 KTPISTLDDSFKIIEAKNQKREVEILTNQIVHSMQKNNLKLSDIAITCLQEKFNEYLPYI 341 Query: 423 QAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD---SRFVSEDVLALLDVPVL 479 + + Y ++ +S L+ + L + S F ++V LL + Sbjct: 342 EECLNKYEIE-YSVLCYNNLSRGESIIALKRLMDLFVSKNGTISNFSRKEVFDLLSNNKV 400 Query: 480 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM-E 538 +F+I+ L YL ++ + I +G + + L ++W G R L+ E Sbjct: 401 MKKFNISTSELNYLIEFSDTMNISFGANKTHKENLNYDQNFLNSWEDGFNRFLMSEIFDE 460 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 + E Q + I +L+ + SL +N ++ Sbjct: 461 KYEEETQKESTRFQDQESIMKLITIVKSLYEDINYFKNK 499 >UniRef50_D1BPP0 ATP-dependent nuclease subunit B-like protein n=3 Tax=Veillonella RepID=D1BPP0_VEIPT Length = 1185 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 95/429 (22%), Positives = 178/429 (41%), Gaps = 73/429 (17%) Query: 368 DPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG 427 + D +I ++ +RE + + +LA +E RD+ +M+ + ++Y ++ VF Sbjct: 296 NSTDETIPLIRGYNREREADAVARGILAYVESSEEARYRDVCIMLRESETYGDTLEKVF- 354 Query: 428 SAPADRY-LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486 RY +P+ I +R ++HP+ E +L + + + + LL ++ +T Sbjct: 355 ----TRYGIPHFIDRQRPMKNHPLGELLTALFDIVRHNYSRDSMFLLLKTDLMP----LT 406 Query: 487 EEGLRYLRQWVNESGI---RW---------GIDDDNVRELELPATGQHTWRFGLTRMLLG 534 E + L +V E GI +W G + E L A + R R + Sbjct: 407 REAVDELENYVLEFGIDHYKWERESWPYLRGFYEGQDEESHLDAPRRA--RVNKARQTIM 464 Query: 535 YAMESAQGEWQSVLPY-DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRD 593 + W Y D +G AE L LL L + R L EW+ Sbjct: 465 DVLSP----WFDFAAYSDGHTG--AEWGAQLYGLLETLQVPER-------LYEWVK---- 507 Query: 594 MLNAFFLPDAETEAAMTLIEQQWQAIIA--EGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 +A + D E++A+ EQ + A+++ + + D + L DE+ L++ Sbjct: 508 --DAETVGDQESKASH---EQMYNAVLSFIDEISMVMKDEI---LTLDEMMLLLEEGLSD 559 Query: 652 QRFLAGP-----VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR--- 703 + P V I T+ S + V ++G+N GV+P+ + G L+ K ++ Sbjct: 560 VNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEG--LIKDKERQELA 617 Query: 704 --------GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL--ID 753 G + ++ +L A+ A L +SY G S +D + PS++V+ L + Sbjct: 618 NAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYAG-SGEDGTGLEPSLVVKRLESLG 676 Query: 754 YIGQSHYLP 762 Y+ Q+ +P Sbjct: 677 YVDQTVEIP 685 >UniRef50_B5E4P4 ATP-dependent helicase/deoxyribonuclease subunit B n=32 Tax=Streptococcus RepID=ADDB_STRP4 Length = 1091 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 25/159 (15%) Query: 379 CHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPY 437 C + + E+E++ + L E+ L+ + +++ D+ SY ++ +F D+Y +P+ Sbjct: 301 CLTQKEELELVARSIRQKLHENSDLSYKHFRILLGDVASYQLSLKTIF-----DQYQIPF 355 Query: 438 AISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWV 497 + A HP+ + S+L+L RF ED++ LL + D+++ + Q++ Sbjct: 356 YLGRSEAMAHHPLTQFVESILALKRYRFRQEDLINLLRTDLYT---DLSQSDIDAFEQYI 412 Query: 498 NESGIRWGIDDDNVRELELPA-----TGQHTWRFGLTRM 531 GI LPA T H +F L R+ Sbjct: 413 RYLGING-----------LPAFQQIFTKSHHGKFNLERL 440 >UniRef50_B6G1B7 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1B7_9CLOT Length = 1158 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 78/396 (19%), Positives = 157/396 (39%), Gaps = 79/396 (19%) Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 +DI + +IDSY ++++F +P+ I+ + +++P++ IS+L + R+ Sbjct: 343 KDITIAARNIDSYESLVKSIFSEYK----IPFYINKKSEAKNNPIITMIISVLEMKKRRY 398 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWR 525 E + L +L D TE+ + L +V +GI ++V E LP + Sbjct: 399 GYETMFRYLKSGLL----DFTEDEISLLENYVIANGISGNKWFEDVWEYRLPNSFYEYEE 454 Query: 526 FGLTRMLLGYAMESAQGEWQSVLPYDE-----SSGLIAELVGHLASLLMQLNIWRRGLAQ 580 + + +DE + + ++ +L L +NI+ + Sbjct: 455 SEEELETKKRINDIKNRVIAPIKRFDEKLSSKNRKTVEDICRYLYEFLEDINIFEK---- 510 Query: 581 ERPLEEWLPVCRD--MLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 +E + + R+ ML E+ A + Q W + S L Sbjct: 511 ---IENTIDILREKGML--------ESAARYS---QVWNTV---------------SDLL 541 Query: 639 DELAQRLDQERIS-QRFL------------------AGPVNICTLMPMRSIPFKVVCLLG 679 D+L + + E+IS +RF+ V + + M + K + L+G Sbjct: 542 DQLVEIMGDEKISLERFIRIVNIALDEYELKTIPPSIDQVTVTEVDRMNNPNTKHLYLIG 601 Query: 680 MNDGVYPRQLAPLGFDLMSQKPKRGD---------RSRRDDDRYLFLEALISAQQKLYIS 730 DGV+P G S + K D R R ++++L +A+ + KL +S Sbjct: 602 TVDGVFPMPSKENGLLSDSDRGKLSDMNVELDKDSRKRVFEEQFLVYKAITATSDKLTVS 661 Query: 731 YIGRSIQDNSERFPSVL--VQELIDYIG-QSHYLPG 763 Y + ++R ++ +++L Y+ +S++L G Sbjct: 662 YPIADSEGKTQRASIIISRIKKLFKYVDIKSYFLEG 697 >UniRef50_Q9RNX8 RecC73 (Fragment) n=1 Tax=Escherichia coli RepID=Q9RNX8_ECOLX Length = 39 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/30 (76%), Positives = 25/30 (83%) Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRF 654 GAQYGDAVPLSLLRDELAQRLD+ + F Sbjct: 1 GAQYGDAVPLSLLRDELAQRLDKNVSASVF 30 >UniRef50_Q24WW7 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Desulfitobacterium hafniense RepID=ADDB_DESHY Length = 1220 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 94/418 (22%), Positives = 159/418 (38%), Gaps = 56/418 (13%) Query: 336 HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLA 395 H + L+ R + F D+ DPL I + + EVE + R L Sbjct: 278 HRFEKAGLKHLERFYNAYPTQTFPGGDDSTAPDPL--GIALFPAANKRAEVEGV-ARELR 334 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFI 455 L + T RD V+ D+ Y I+ VF + +PY + +R HP+LE + Sbjct: 335 RLAREEGRTWRDCSVVTRDLPGYQGIIEQVFNA----HEIPYFLDHKRPVIHHPLLELLL 390 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE 515 S + + E + L F +++ + L + GI N Sbjct: 391 SAIETVQKDWAYEPLFRCLKTDF----FPCSKDRIDRLENYCLAYGIHGSAWKGNRSWSY 446 Query: 516 LPATGQHTWRFGL--TRMLLGYAMESAQGEWQSVLPYDESSG---LIAELVGHLASLLMQ 570 P GL TR ++ Y + S Q++ P+ E+ G +A++ + LL++ Sbjct: 447 YPDPNHKEETAGLNETRQII-YDLFSPFD--QAIRPHPEAGGPSVTVAQITEAIYELLIR 503 Query: 571 LNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII------AEGL 624 L + L+EW + A L Q W A+I GL Sbjct: 504 LKVPEH-------LQEWAEAAHSRGDL---------AEAQLQNQIWDAVIQVLDELVAGL 547 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGV 684 G + D +++ + L I + V + +L R+ V+ LLG NDG+ Sbjct: 548 GEEVMDLSDFAMILTSGLENLQLGLIPPGY--DQVLVGSLDRSRNPETAVLFLLGANDGI 605 Query: 685 YPRQLAPLG-FDLMSQ----------KPKRGDRSRRDDDRYLFLEALISAQQKLYISY 731 P + + G FD + + PK + + +++Y AL A+++LYISY Sbjct: 606 LPGKPSDEGVFDELERLRLESKGIMLAPK--GKVQVYEEQYFIYTALTRAREQLYISY 661 >UniRef50_Q0AXV2 DNA helicase/exodeoxyribonuclease V, subunit B n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXV2_SYNWW Length = 1124 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 148/373 (39%), Gaps = 77/373 (20%) Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 +D+ V+ D+D Y I+ F D +P + +R SHP++E ++ L + + Sbjct: 334 KDMAVVCHDLDRYGSLIRRTF----RDYGIPCFMDRKRDIMSHPIIELILAALEILSRGY 389 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWR 525 EDV L D+T + + L + + +GI + +E + Sbjct: 390 RYEDVFTYLKTGF----SDLTVDEVEILENY----ALEYGIKGNKWKEDFSYGDAESLIE 441 Query: 526 FGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLE 585 R+L +E V+ + + I E+ L + L + NI+ + LE Sbjct: 442 LNQKRLLFTKPLEDL-----GVML--KGNNTIREMAQALFAFLERENIYSK-------LE 487 Query: 586 EWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII------AEGLGAQYGDAVPLSLLRD 639 +W D+L FL +A + Q W A+I E +G Q V L Sbjct: 488 KW---TNDLLARGFLEEASESS------QLWNAMIEILKQMVEIMGEQ---KVNLK---- 531 Query: 640 ELAQRLDQERISQRFLAGPVNICTLM---PMRSIPFKVVCL--LGMNDGVYPRQLAPLGF 694 E + L+ +S P + ++ RS + CL +G+NDG+ P G Sbjct: 532 EFKRILEAGFLSLEIKIIPTTVDQVLLGDIQRSKSHDIKCLYVIGVNDGILPSLGREEG- 590 Query: 695 DLMSQKPKRGDRSRR-----------DDDRYLFLEALISAQQKLYISYI-----GRSIQD 738 ++S+ K + + +++R+L AL +++Y SY GR+++ Sbjct: 591 -ILSETEKEALQEKGLDLGYEREMIWEEERFLIYSALAKPAERIYFSYALADEEGRALR- 648 Query: 739 NSERFPSVLVQEL 751 PS+L+ +L Sbjct: 649 -----PSLLIDQL 656 >UniRef50_C8W206 ATP-dependent DNA helicase PcrA n=2 Tax=Clostridiales RepID=C8W206_DESAS Length = 737 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 15/149 (10%) Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 VN+ TL + + F V L+ M +G++P A D +++R L Sbjct: 560 VNMMTLHTAKGLEFPFVFLVAMEEGIFPHNRAL------------SDAGELEEERRLAYV 607 Query: 719 ALISAQQKLYISY-IGRSIQDNSERF-PSVLVQEL-IDYIGQSHYLPGDEALNCDESEAR 775 + A+QKLY+SY R+I N+ PS ++E+ +D + +H + +N + + Sbjct: 608 GMTRARQKLYLSYSFQRTIYGNTNYCRPSRFLEEIPVDLVSGAHPYEERQKINTQVKKQQ 667 Query: 776 VKAHLTCLHTRMPFDPQNYQPGERQSYAR 804 + + P QN+ G++ +A+ Sbjct: 668 ETSKRNQTTVKKPAAGQNFVLGDKVHHAK 696 >UniRef50_Q04T79 ATP-dependent DNA helicase n=6 Tax=Leptospira RepID=Q04T79_LEPBJ Length = 730 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 21/154 (13%) Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L VN+ T+ + + FK+V L G+ +G +P ++ + GD +++R Sbjct: 545 LTDYVNLMTVHNAKGLEFKIVFLSGLEEGTFPHSMSL-------EDSHFGD----EEERR 593 Query: 715 LFLEALISAQQKLYISY--IGRSIQDNSERFPSVLVQEL-----IDYIGQSHYLPGDEAL 767 LF AL A+++L++SY R +R PS + E+ ++ + + H + Sbjct: 594 LFYVALTRAREQLFLSYCRTSRKFGKVEDRIPSRFLSEIPEECFVERVSREHTARSPQGA 653 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQN--YQPGER 799 R++ + P DP N +PG+R Sbjct: 654 PLASKTRRIEEKFNSGFSSTP-DPTNLYLKPGDR 686 >UniRef50_Q3DPK7 Exonuclease RexB (Fragment) n=3 Tax=Streptococcus RepID=Q3DPK7_STRAG Length = 319 Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 9/99 (9%) Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLPDSR 464 +DI+V++ D+DSY + +F ++Y +PY +HP++ SL + R Sbjct: 16 KDILVLLGDVDSYKLQLSKIF-----EQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYR 70 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR 503 F +EDVL L + +I+++ L Y +++ + I+ Sbjct: 71 FRAEDVLNLFKTGIYG---EISQDDLDYFEAYISYADIK 106 >UniRef50_A3CVM8 ATP-dependent nuclease subunit B-like protein n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CVM8_METMJ Length = 1049 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED---PTLTPRDIIVMVAD 414 FSRS+ P+D + RE EV R +A D + P +I V D Sbjct: 272 FSRSE------PVDCCGFVRLAERRDREGEV---RAIAQEIRDLVAAGVRPDEIAVAFPD 322 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 S P+++ VF D +PYA SD RA + P++ A + + +P + EDV+AL Sbjct: 323 FASALPYVEEVF----PDFGVPYAASDGRALSASPLVRALLDVAMVPARGYRREDVVALA 378 Query: 475 DVPVL 479 P L Sbjct: 379 TSPYL 383 >UniRef50_Q038V6 ATP-dependent helicase/deoxyribonuclease subunit B n=8 Tax=Lactobacillus RepID=ADDB_LACC3 Length = 1179 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 73/381 (19%), Positives = 151/381 (39%), Gaps = 66/381 (17%) Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 RD +++ +D Y+ I A+F + +P R + HP++ SL ++ D + Sbjct: 345 RDFLILARRLDPYAAVIPAIF----EEFNIPQFTDLERPMKDHPLVVLIESLFAIQDHDY 400 Query: 466 VSEDVLALL----------DVPVLAARFDITEE-----GLRYLRQWVNESGIRWGIDDDN 510 +DV+ LL D+ D T+ G+ ++W R+ + N Sbjct: 401 QYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQTDPWRYFQRNPN 460 Query: 511 VRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQ 570 + +L T + + L+ + +WQ+ E++ + + + ++ Q Sbjct: 461 ADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLYQWL-QTTGVIDQ 519 Query: 571 LNIWRRG------LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL 624 LN+WR+ L++ + E+ +LN + E + Q++ ++A G Sbjct: 520 LNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEAD----FNRDQFRELLAAGF 575 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGV 684 + +P + LD IS+ L +R K V ++G + Sbjct: 576 ASATYTQIPST---------LDSVVISETGL-----------VRLAKAKHVYVIGATNTA 615 Query: 685 YPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL------------FLEAL--ISAQQKLYIS 730 P P +++ + ++ ++ DDR+L F+ L ++A +KL +S Sbjct: 616 MPD--VPNDSGVLNSEERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLS 673 Query: 731 YIGRSIQDNSERFPSVLVQEL 751 Y ++ Q+NSE S ++L Sbjct: 674 YPMQNTQENSENQASPYFRQL 694 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P07648 Exodeoxyribonuclease V gamma chain n=185 Tax=cel... 1541 0.0 UniRef50_C4K849 Exonuclease V, gamma chain with recB and recD: 5... 1267 0.0 UniRef50_D0ICS0 Exodeoxyribonuclease V gamma chain n=1 Tax=Grimo... 1226 0.0 UniRef50_A6FE97 Putative exodeoxyribonuclease V n=1 Tax=Moritell... 1205 0.0 UniRef50_B6EGE9 Exodeoxyribonuclease V gamma chain n=1 Tax=Aliiv... 1185 0.0 UniRef50_C9PLM5 Exodeoxyribonuclease V gamma chain n=5 Tax=Gamma... 1180 0.0 UniRef50_A1SUW0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ps... 1177 0.0 UniRef50_Q2BKD9 Exodeoxyribonuclease V, 125 kDa subunit n=2 Tax=... 1163 0.0 UniRef50_A5GC93 DNA helicase/exodeoxyribonuclease V, gamma subun... 1133 0.0 UniRef50_C4L7B2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=To... 1126 0.0 UniRef50_A4SSU8 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ae... 1118 0.0 UniRef50_Q1LST9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ba... 1114 0.0 UniRef50_A6W0B0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ma... 1091 0.0 UniRef50_B8CMV5 Exodeoxyribonuclease V, RecC subunit n=1 Tax=She... 1082 0.0 UniRef50_Q2LTC9 Exodeoxyribonuclease V gamma chain n=2 Tax=Bacte... 1074 0.0 UniRef50_A1AQY6 DNA helicase/exodeoxyribonuclease V, gamma subun... 1073 0.0 UniRef50_Q9CM76 RecC n=1 Tax=Pasteurella multocida RepID=Q9CM76_... 1071 0.0 UniRef50_Q3IJ13 Exonuclease V, gamma chain with recB and recD: 5... 1063 0.0 UniRef50_Q65UM5 RecC protein n=9 Tax=Gammaproteobacteria RepID=Q... 1059 0.0 UniRef50_A3QEU7 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Sh... 1057 0.0 UniRef50_Q15V11 DNA helicase/exodeoxyribonuclease V, gamma subun... 1056 0.0 UniRef50_B8E565 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Sh... 1055 0.0 UniRef50_Q080D9 Exodeoxyribonuclease V, gamma subunit n=6 Tax=Sh... 1054 0.0 UniRef50_Q3ASJ4 DNA helicase/exodeoxyribonuclease V, gamma subun... 1048 0.0 UniRef50_A1S6U9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Sh... 1044 0.0 UniRef50_A8ZX08 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 1033 0.0 UniRef50_Q3B473 DNA helicase/exodeoxyribonuclease V, gamma subun... 1030 0.0 UniRef50_Q12LP5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ba... 1025 0.0 UniRef50_P44945 Exodeoxyribonuclease V gamma chain n=21 Tax=Haem... 1010 0.0 UniRef50_C0N788 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Me... 1001 0.0 UniRef50_Q7VRF1 Exonuclease V, subunit n=2 Tax=Candidatus Blochm... 998 0.0 UniRef50_Q7NQR0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ch... 994 0.0 UniRef50_A4JS85 DNA helicase/exodeoxyribonuclease V, gamma subun... 989 0.0 UniRef50_A1TWK1 DNA helicase/exodeoxyribonuclease V, gamma subun... 979 0.0 UniRef50_D2BZV3 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ga... 977 0.0 UniRef50_C1DMH2 Exodeoxyribonuclease V, gamma subunit n=18 Tax=G... 970 0.0 UniRef50_A6VQ90 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ac... 969 0.0 UniRef50_C0QI08 RecC n=1 Tax=Desulfobacterium autotrophicum HRM2... 960 0.0 UniRef50_B8FB93 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 958 0.0 UniRef50_Q2SQD5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ha... 957 0.0 UniRef50_A4VRQ6 Exodeoxyribonuclease V gamma chain n=1 Tax=Pseud... 956 0.0 UniRef50_C5S7Q0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Al... 955 0.0 UniRef50_A3JIN1 Exodeoxyribonuclease V gamma chain n=2 Tax=cellu... 954 0.0 UniRef50_B9CWC7 Exodeoxyribonuclease V gamma chain n=2 Tax=Actin... 953 0.0 UniRef50_B0BTG3 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Pa... 946 0.0 UniRef50_Q0VNI2 Exodeoxyribonuclease V gamma chain n=3 Tax=Gamma... 944 0.0 UniRef50_C1D6T7 RecC n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 941 0.0 UniRef50_C5JAU6 DNA helicase/exodeoxyribonuclease V, gamma subun... 935 0.0 UniRef50_Q1N2R1 Exonuclease V gamma subunit n=1 Tax=Bermanella m... 934 0.0 UniRef50_D0KY94 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ha... 932 0.0 UniRef50_C6MAC3 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Ne... 924 0.0 UniRef50_A1KVC5 Exodeoxyribonuclease V n=23 Tax=Neisseria RepID=... 923 0.0 UniRef50_C7I4N7 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Th... 912 0.0 UniRef50_Q5QUQ7 Exonuclease V gamma subunit n=2 Tax=Idiomarina R... 908 0.0 UniRef50_C7LVF8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 907 0.0 UniRef50_C5TL47 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Ne... 906 0.0 UniRef50_P57528 Exodeoxyribonuclease V gamma chain n=4 Tax=Buchn... 896 0.0 UniRef50_C8R0F3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 896 0.0 UniRef50_B5JRL4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=ga... 887 0.0 UniRef50_Q1QYD4 DNA helicase/exodeoxyribonuclease V, gamma subun... 876 0.0 UniRef50_A4B914 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Re... 861 0.0 UniRef50_Q480N8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Co... 860 0.0 UniRef50_D0IXL5 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Co... 860 0.0 UniRef50_Q60AZ6 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Me... 860 0.0 UniRef50_C4ZM87 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Th... 852 0.0 UniRef50_A1SDB1 DNA helicase/exodeoxyribonuclease V, gamma subun... 850 0.0 UniRef50_C1SHH5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 846 0.0 UniRef50_Q1NSB7 Exodeoxyribonuclease V, RecC subunit n=3 Tax=Pro... 846 0.0 UniRef50_B0TXZ0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Fr... 831 0.0 UniRef50_A1KCB8 DNA helicase, ATP-dependent dsDNA/ssDNA exonucle... 823 0.0 UniRef50_B1XZ24 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 822 0.0 UniRef50_C3X2X1 Exodeoxyribonuclease V n=2 Tax=Oxalobacter formi... 819 0.0 UniRef50_C4GHY2 Putative uncharacterized protein n=1 Tax=Kingell... 818 0.0 UniRef50_Q6ANK2 Related to exodeoxyribonuclease V, gamma chain n... 816 0.0 UniRef50_B4RTM0 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Al... 814 0.0 UniRef50_A6DNF3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 814 0.0 UniRef50_Q14GK3 Exodeoxyribonuclease V gamma chain n=16 Tax=Fran... 811 0.0 UniRef50_C1ACJ2 Exodeoxyribonuclease V gamma subunit n=1 Tax=Gem... 809 0.0 UniRef50_D2PR48 Exodeoxyribonuclease V, gamma subunit n=12 Tax=A... 808 0.0 UniRef50_D1N1Q2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Vi... 806 0.0 UniRef50_C8XGX0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Na... 793 0.0 UniRef50_Q89AB4 Exodeoxyribonuclease V gamma chain n=1 Tax=Buchn... 789 0.0 UniRef50_Q8D2T9 RecC protein n=1 Tax=Wigglesworthia glossinidia ... 787 0.0 UniRef50_A1V2S0 Exodeoxyribonuclease V, gamma subunit n=90 Tax=c... 786 0.0 UniRef50_C0ZQ87 Exodeoxyribonuclease V gamma chain n=6 Tax=Coryn... 784 0.0 UniRef50_B5JHV1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ve... 782 0.0 UniRef50_B5EPU5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ac... 775 0.0 UniRef50_UPI0001C32181 exodeoxyribonuclease V, gamma subunit n=1... 769 0.0 UniRef50_C7PDT3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ch... 767 0.0 UniRef50_P96921 Exodeoxyribonuclease V gamma chain n=23 Tax=Myco... 762 0.0 UniRef50_UPI0000E0F593 exodeoxyribonuclease V, gamma subunit n=1... 758 0.0 UniRef50_Q3BM39 Exodeoxyribonuclease V, gamma chain n=19 Tax=Xan... 757 0.0 UniRef50_D2U882 Probable exodeoxyribonuclease v, gamma chain pro... 756 0.0 UniRef50_C6NU56 Exodeoxyribonuclease V gamma chain n=1 Tax=Acidi... 736 0.0 UniRef50_Q7VBK2 Exonuclease V gamma subunit n=1 Tax=Prochlorococ... 719 0.0 UniRef50_D0L8X4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Go... 715 0.0 UniRef50_A9BB00 Possible exodeoxyribonuclease V subunit C 125 kD... 710 0.0 UniRef50_A2C8A0 Possible exodeoxyribonuclease V gamma chain n=4 ... 706 0.0 UniRef50_A6W6P1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ki... 706 0.0 UniRef50_C6HV34 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 704 0.0 UniRef50_A2C3H2 Possible exodeoxyribonuclease V subunit C 125 kD... 700 0.0 UniRef50_B2I2P5 Exonuclease V gamma subunit n=14 Tax=Acinetobact... 684 0.0 UniRef50_Q3AJ30 Exodeoxyribonuclease V, gamma subunit n=5 Tax=Sy... 682 0.0 UniRef50_A5GLW8 Exodeoxyribonuclease V gamma chain n=4 Tax=Synec... 667 0.0 UniRef50_Q6FF17 Exonuclease V, gamma chain n=3 Tax=Acinetobacter... 664 0.0 UniRef50_Q05XZ7 Possible exodeoxyribonuclease V gamma chain n=1 ... 664 0.0 UniRef50_D0SSR5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ac... 650 0.0 UniRef50_A3ETY6 Putative exodeoxyribonuclease V, gamma subunit n... 620 e-176 UniRef50_A5GU99 Exodeoxyribonuclease V gamma chain n=1 Tax=Synec... 604 e-171 UniRef50_D1R7X4 Putative uncharacterized protein n=1 Tax=Parachl... 597 e-169 UniRef50_Q6MFB7 Putative exodeoxyribonuclease V gamma chain n=1 ... 586 e-165 UniRef50_A5EWC3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Di... 527 e-148 UniRef50_A2BX92 Possible exodeoxyribonuclease V subunit C 125 kD... 494 e-138 UniRef50_Q4FSM9 Possible exoribodeoxynuclease V, gamma subunit n... 491 e-137 UniRef50_D0LXX8 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 482 e-134 UniRef50_C9RQA7 Exodeoxyribonuclease V RecC subunit n=1 Tax=Fibr... 463 e-128 UniRef50_C8NCI0 Exoribodeoxynuclease V, gamma subunit n=1 Tax=Ca... 458 e-127 UniRef50_Q057F6 Exodeoxyribonuclease V, g chain n=1 Tax=Buchnera... 420 e-115 UniRef50_A7BX05 Exodeoxyribonuclease V gamma chain n=1 Tax=Beggi... 401 e-110 UniRef50_Q6A851 Exodeoxyribonuclease V gamma chain n=3 Tax=Propi... 364 1e-98 UniRef50_C8PVF1 Putative exoribodeoxynuclease V, gamma subunit n... 297 1e-78 UniRef50_C1RHS2 Exonuclease V gamma subunit n=1 Tax=Cellulomonas... 294 1e-77 UniRef50_Q04UR0 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Le... 291 1e-76 UniRef50_B0SIS7 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Le... 282 5e-74 UniRef50_Q9RNX7 RecC1001 (Fragment) n=71 Tax=Bacteria RepID=Q9RN... 255 6e-66 UniRef50_UPI0001699EF8 Exodeoxyribonuclease V, RecC subunit n=1 ... 227 2e-57 UniRef50_Q8ERW6 ATP-dependent helicase/deoxyribonuclease subunit... 214 2e-53 UniRef50_C8SXN2 Exodeoxyribonuclease subunit V gamma (Fragment) ... 197 2e-48 UniRef50_B7J2J0 Exodeoxyribonuclease V, gamma chain n=26 Tax=Bor... 193 3e-47 UniRef50_A4J4E2 ATP-dependent helicase/deoxyribonuclease subunit... 150 3e-34 UniRef50_A2PDE9 Putative uncharacterized protein (Fragment) n=1 ... 148 9e-34 Sequences not found previously or not previously below threshold: UniRef50_Q9K2F1 Exodeoxyribonuclease V, gamma subunit, putative ... 162 6e-38 UniRef50_Q3KL55 Exodeoxyribonuclease V gamma chain n=11 Tax=Chla... 146 4e-33 UniRef50_C6CTT5 ATP-dependent nuclease subunit B n=1 Tax=Paeniba... 125 1e-26 UniRef50_C0GDI4 ATP-dependent nuclease subunit B n=1 Tax=Dethiob... 121 1e-25 UniRef50_A1HTK8 UvrD-like DNA helicase, C terminal n=1 Tax=Therm... 119 8e-25 UniRef50_B0TDI1 ATP-dependent helicase/deoxyribonuclease subunit... 116 4e-24 UniRef50_Q18AP0 ATP-dependent helicase/deoxyribonuclease subunit... 115 1e-23 UniRef50_UPI0001AF5A75 exodeoxyribonuclease V, gamma subunit n=1... 114 3e-23 UniRef50_B1I494 ATP-dependent helicase/deoxyribonuclease subunit... 113 4e-23 UniRef50_A6LPC3 ATP-dependent helicase/deoxyribonuclease subunit... 113 5e-23 UniRef50_B9E0C6 ATP-dependent helicase/deoxyribonuclease subunit... 111 1e-22 UniRef50_D1BPP0 ATP-dependent nuclease subunit B-like protein n=... 111 2e-22 UniRef50_Q24WW7 ATP-dependent helicase/deoxyribonuclease subunit... 110 3e-22 UniRef50_Q1Q1J4 Putative uncharacterized protein n=1 Tax=Candida... 110 4e-22 UniRef50_B7JDU3 ATP-dependent helicase/deoxyribonuclease subunit... 109 6e-22 UniRef50_C5RQN7 ATP-dependent nuclease subunit B n=1 Tax=Clostri... 108 1e-21 UniRef50_A8FBR0 ATP-dependent helicase/deoxyribonuclease subunit... 106 4e-21 UniRef50_A4IKW6 ATP-dependent helicase/deoxyribonuclease subunit... 106 5e-21 UniRef50_A8VW70 Beta-lactamase n=1 Tax=Bacillus selenitireducens... 105 1e-20 UniRef50_A7GAI7 ATP-dependent helicase/deoxyribonuclease subunit... 105 1e-20 UniRef50_B0KDB8 ATP-dependent helicase/deoxyribonuclease subunit... 104 2e-20 UniRef50_UPI00016C0037 ATP-dependent nuclease subunit B n=1 Tax=... 104 2e-20 UniRef50_B6G1B7 Putative uncharacterized protein n=1 Tax=Clostri... 104 2e-20 UniRef50_UPI00017899D8 ATP-dependent nuclease subunit B n=1 Tax=... 100 4e-19 UniRef50_UPI0001850BBB ATP-dependent nuclease, subunit B n=1 Tax... 98 1e-18 UniRef50_Q0SWW7 ATP-dependent helicase/deoxyribonuclease subunit... 98 2e-18 UniRef50_C0Z546 ATP-dependent nuclease subunit B n=1 Tax=Breviba... 98 2e-18 UniRef50_UPI0001692BDC ATP-dependent nuclease, subunit B n=1 Tax... 97 3e-18 UniRef50_B2A611 ATP-dependent helicase/deoxyribonuclease subunit... 97 4e-18 UniRef50_B6FV68 Putative uncharacterized protein n=1 Tax=Clostri... 96 7e-18 UniRef50_B8I2Y3 ATP-dependent helicase/deoxyribonuclease subunit... 95 1e-17 UniRef50_D2LU04 ATP-dependent nuclease subunit B n=1 Tax=Bacillu... 93 4e-17 UniRef50_C6LH76 ATP-dependent nuclease subunit B n=1 Tax=Bryante... 93 5e-17 UniRef50_C4Z990 AddB n=1 Tax=Eubacterium rectale ATCC 33656 RepI... 93 5e-17 UniRef50_B0PD61 Putative uncharacterized protein n=1 Tax=Anaerot... 92 9e-17 UniRef50_Q2RL78 ATP-dependent helicase/deoxyribonuclease subunit... 92 1e-16 UniRef50_C9LTM7 ATP-dependent nuclease subunit B n=1 Tax=Selenom... 91 2e-16 UniRef50_B1C9D7 Putative uncharacterized protein n=1 Tax=Anaerof... 91 3e-16 UniRef50_C0FS44 Putative uncharacterized protein n=2 Tax=Rosebur... 90 5e-16 UniRef50_B8DF43 ATP-dependent helicase/deoxyribonuclease subunit... 90 7e-16 UniRef50_B0NWV1 Putative uncharacterized protein n=2 Tax=Clostri... 89 8e-16 UniRef50_C7GAA1 ATP-dependent nuclease n=1 Tax=Roseburia intesti... 89 1e-15 UniRef50_C4G1J6 Putative uncharacterized protein n=1 Tax=Abiotro... 88 2e-15 UniRef50_B5E4P4 ATP-dependent helicase/deoxyribonuclease subunit... 88 2e-15 UniRef50_Q4L4Y2 ATP-dependent helicase/deoxyribonuclease subunit... 88 3e-15 UniRef50_Q67MD4 ATP-dependent helicase/deoxyribonuclease subunit... 87 3e-15 UniRef50_A0AL19 ATP-dependent helicase/deoxyribonuclease subunit... 87 3e-15 UniRef50_A6TVN9 ATP-dependent helicase/deoxyribonuclease subunit... 87 6e-15 UniRef50_UPI0001699040 hypothetical protein Epers_04977 n=1 Tax=... 86 6e-15 UniRef50_C4V2E4 ATP-dependent deoxyribonuclease subunit B n=2 Ta... 86 6e-15 UniRef50_B1YKM7 ATP-dependent helicase/deoxyribonuclease subunit... 85 1e-14 UniRef50_B9NIQ2 Predicted protein n=1 Tax=Populus trichocarpa Re... 85 1e-14 UniRef50_C9KJP7 ATP-dependent nuclease subunit B n=1 Tax=Mitsuok... 84 3e-14 UniRef50_C6IZE2 ATP-dependent nuclease subunit B n=1 Tax=Paeniba... 84 4e-14 UniRef50_C9LQY6 Putative ATP-dependent nuclease subunit B n=1 Ta... 83 4e-14 UniRef50_C4FTG6 Putative uncharacterized protein n=1 Tax=Catonel... 83 8e-14 UniRef50_B9XFA2 ATP-dependentnuclease subunitB n=1 Tax=bacterium... 81 2e-13 UniRef50_A9KTE7 ATP-dependent helicase/deoxyribonuclease subunit... 81 2e-13 UniRef50_B1HN89 ATP-dependent helicase/deoxyribonuclease subunit... 81 3e-13 UniRef50_B7AS97 Putative uncharacterized protein n=1 Tax=Bactero... 80 4e-13 UniRef50_D0BK92 Exonuclease RexB n=1 Tax=Granulicatella elegans ... 80 4e-13 UniRef50_Q3AA34 ATP-dependent helicase/deoxyribonuclease subunit... 80 5e-13 UniRef50_Q0AXV2 DNA helicase/exodeoxyribonuclease V, subunit B n... 80 7e-13 UniRef50_Q04GY8 ATP-dependent helicase/deoxyribonuclease subunit... 79 9e-13 UniRef50_Q03D70 ATP-dependent helicase/deoxyribonuclease subunit... 79 1e-12 UniRef50_UPI00019738F1 ATP-dependent nuclease subunit B n=2 Tax=... 79 1e-12 UniRef50_B2KE91 ATP-dependent nuclease subunit B-like protein n=... 78 1e-12 UniRef50_A7VXI0 Putative uncharacterized protein n=1 Tax=Clostri... 78 2e-12 UniRef50_A3CVM8 ATP-dependent nuclease subunit B-like protein n=... 78 2e-12 UniRef50_UPI0001C37CA1 ATP-dependent nuclease subunit B n=1 Tax=... 77 3e-12 UniRef50_B0NKJ8 Putative uncharacterized protein n=8 Tax=Clostri... 77 5e-12 UniRef50_A6CDV2 ATP-dependent deoxyribonuclease subunit B n=1 Ta... 76 8e-12 UniRef50_Q836J9 ATP-dependent helicase/deoxyribonuclease subunit... 76 1e-11 UniRef50_C8NER5 Exonuclease RexB n=1 Tax=Granulicatella adiacens... 75 1e-11 UniRef50_C0EV12 Putative uncharacterized protein n=1 Tax=Eubacte... 75 1e-11 UniRef50_Q038V6 ATP-dependent helicase/deoxyribonuclease subunit... 75 2e-11 UniRef50_C9A8J1 Exonuclease RexB n=4 Tax=Enterococcus RepID=C9A8... 75 2e-11 UniRef50_A5ZW43 Putative uncharacterized protein n=1 Tax=Ruminoc... 75 2e-11 UniRef50_A6NVW2 Putative uncharacterized protein n=1 Tax=Bactero... 74 3e-11 UniRef50_A8U8N1 Exonuclease RexB n=1 Tax=Carnobacterium sp. AT7 ... 74 4e-11 UniRef50_C6JEU6 Putative uncharacterized protein n=1 Tax=Ruminoc... 73 4e-11 UniRef50_C0CXR8 Putative uncharacterized protein n=2 Tax=Clostri... 72 9e-11 UniRef50_C0CPC7 Putative uncharacterized protein n=1 Tax=Blautia... 72 1e-10 UniRef50_Q03NA6 ATP-dependent helicase/deoxyribonuclease subunit... 72 1e-10 UniRef50_A8YVK1 ATP-dependent helicase/deoxyribonuclease subunit... 71 3e-10 UniRef50_C9LAG6 ATP-dependent nuclease subunit B n=1 Tax=Blautia... 70 4e-10 UniRef50_C0EHH2 Putative uncharacterized protein n=1 Tax=Clostri... 70 5e-10 UniRef50_C4G8W0 Putative uncharacterized protein n=1 Tax=Shuttle... 69 9e-10 UniRef50_C0WLM6 ATP-dependent deoxyribonuclease, subunit B n=3 T... 69 1e-09 UniRef50_Q2FUG2 ATP-dependent nuclease subunit B-like n=1 Tax=Me... 68 1e-09 UniRef50_C8PAK3 ATP-dependent exonuclease subunit B n=1 Tax=Lact... 68 3e-09 UniRef50_C2BHK2 Putative uncharacterized protein n=1 Tax=Anaeroc... 67 3e-09 UniRef50_Q02D21 ATP-dependent nuclease subunit B-like protein n=... 67 4e-09 UniRef50_A8SJB4 Putative uncharacterized protein n=1 Tax=Parvimo... 67 6e-09 UniRef50_B7GQ32 ATP-dependent nuclease subunit B-like protein n=... 67 6e-09 UniRef50_B0RA37 Nuclease subunit B homolog n=1 Tax=Halobacterium... 65 2e-08 UniRef50_C4Z483 Putative uncharacterized protein n=1 Tax=Eubacte... 64 3e-08 UniRef50_D1PLS4 Putative ATP-dependent nuclease subunit B n=1 Ta... 64 4e-08 UniRef50_A5ZAT7 Putative uncharacterized protein n=1 Tax=Eubacte... 63 4e-08 UniRef50_D2PY24 ATP-dependent nuclease subunit B-like protein n=... 63 6e-08 UniRef50_UPI0001C314BA ATP-dependent nuclease subunit B-like pro... 61 3e-07 UniRef50_C5RAZ7 ATP-dependent deoxyribonuclease, subunit B n=1 T... 60 6e-07 UniRef50_C0QS88 Putative uncharacterized protein n=1 Tax=Perseph... 60 7e-07 UniRef50_Q04T79 ATP-dependent DNA helicase n=6 Tax=Leptospira Re... 59 8e-07 UniRef50_C1ZCN1 ATP-dependent nuclease, subunit B n=1 Tax=Planct... 59 8e-07 UniRef50_A5GQG6 UvrD/REP helicase n=18 Tax=Cyanobacteria RepID=A... 59 1e-06 UniRef50_A2RH76 ATP-dependent helicase/deoxyribonuclease subunit... 58 1e-06 UniRef50_Q11Q08 DNA-dependent ATPase I and helicase II n=1 Tax=C... 58 2e-06 UniRef50_B1MZM3 ATP-dependent helicase/deoxyribonuclease subunit... 58 2e-06 UniRef50_D1CD72 UvrD/REP helicase n=1 Tax=Thermobaculum terrenum... 58 2e-06 UniRef50_A4W0M6 ATP-dependent helicase/deoxyribonuclease subunit... 58 2e-06 UniRef50_B2UPY5 UvrD/REP helicase n=2 Tax=Verrucomicrobia RepID=... 58 2e-06 UniRef50_B9EAN7 ATP-dependent nuclease subunit B n=1 Tax=Macroco... 58 3e-06 UniRef50_A4IYZ2 ATP-dependent DNA helicase/UvrD/REP helicase n=2... 57 4e-06 UniRef50_B4CU41 UvrD/REP helicase n=1 Tax=Chthoniobacter flavus ... 57 4e-06 UniRef50_D2RKU2 ATP-dependent nuclease subunit B-like protein n=... 57 4e-06 UniRef50_A4XBE9 ATP-dependent DNA helicase PcrA n=18 Tax=Actinom... 57 6e-06 UniRef50_A9BDV1 UvrD/REP helicase n=44 Tax=Cyanobacteria RepID=A... 56 7e-06 UniRef50_C7QGW9 ATP-dependent DNA helicase PcrA n=8 Tax=Bacteria... 56 8e-06 >UniRef50_P07648 Exodeoxyribonuclease V gamma chain n=185 Tax=cellular organisms RepID=EX5C_ECOLI Length = 1122 Score = 1541 bits (3991), Expect = 0.0, Method: Composition-based stats. Identities = 1122/1122 (100%), Positives = 1122/1122 (100%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI Sbjct: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD Sbjct: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG Sbjct: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF Sbjct: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL Sbjct: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR Sbjct: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP Sbjct: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA Sbjct: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA Sbjct: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL Sbjct: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN Sbjct: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL Sbjct: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL Sbjct: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 Query: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF Sbjct: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR Sbjct: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ 960 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ Sbjct: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ 960 Query: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL Sbjct: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 Query: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM Sbjct: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 Query: 1081 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS Sbjct: 1081 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 >UniRef50_C4K849 Exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K849_HAMD5 Length = 1123 Score = 1267 bits (3278), Expect = 0.0, Method: Composition-based stats. Identities = 614/1130 (54%), Positives = 797/1130 (70%), Gaps = 29/1130 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M YHSN+LD+L+ L ++E+E L +PF+ E+ILVQS GMAQWLQ+ L+Q GI+ANI Sbjct: 1 MFITYHSNQLDLLKTLTSTLIEKEPLKNPFQKEIILVQSPGMAQWLQIQLAQSLGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPA+FIWDMF +VL IPKES FNK +M+WKLM LLP LL+ F ++HYL DD D Sbjct: 61 QFPLPATFIWDMFTKVLKNIPKESPFNKDAMTWKLMCLLPDLLQNPIFASIKHYLQDDED 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K+K+ QL+ + ADLFDQYLVYR +WL WE G + L + Q WQA LW +L+ Y+ QL Sbjct: 121 KQKIHQLAIRIADLFDQYLVYRSEWLDGWENGKKFDDLNKNQDWQAALWVSLIRYSRQLE 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 QP WHRA LYQRFI+ L LP RVFI GIS LPP+YL+ L+AL +H++IH +F Sbjct: 181 QPEWHRARLYQRFIQALNKNDVDSDLLPKRVFIFGISTLPPIYLKGLEALSRHMDIHFMF 240 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPCRY+WGDI++ LAKL + + E++ NPLL Sbjct: 241 NNPCRYFWGDIQNYDILAKLNIKNTSSDLRN-------------------IEEEQINPLL 281 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 ASWG+LGRD++YLLS +E QE+ AFVD+ PDNLLH +Q D+LE +N+A + E S Sbjct: 282 ASWGRLGRDHLYLLSQIEGLQEIHAFVDIEPDNLLHALQHDMLEFKNQATRHFS-ESNSH 340 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + KR LD D SI H CHS QREVE+L D+LL + EDP LTPRD+IVMVADID+Y+P Sbjct: 341 HNKKRLLDINDRSIGVHSCHSQQREVEILQDQLLNLFSEDPALTPRDVIVMVADIDNYAP 400 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +IQAVF +A +RYLP+AISDR+ Q HPVL+ FI LL LP SRF SE VL LL++ L+ Sbjct: 401 YIQAVFSNASLERYLPFAISDRKMTQVHPVLQTFIKLLDLPQSRFSSEQVLGLLEISALS 460 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 +F+I E+ L LR+WV SGIRWG+D++NV++L LP TGQHTW+FGL RM LGYAM+S Sbjct: 461 QKFEIQEKELSLLREWVEGSGIRWGLDNENVQDLSLPITGQHTWQFGLKRMFLGYAMDSQ 520 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 G+W+ VLPYDES+GL AEL+G LA LLM L+IWR+ L R L EWLP+CRD+ AFF Sbjct: 521 AGDWEGVLPYDESTGLAAELIGKLARLLMMLSIWRKKLKTSRLLSEWLPLCRDLFYAFFE 580 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 +AETE+ LI+QQWQ II GL AQY + VP+SL+R +L R + +RISQRFLAGP+N Sbjct: 581 SNAETESIFILIDQQWQNIIQYGLSAQYANTVPVSLIRHDLVTRFENQRISQRFLAGPIN 640 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 CTLMPMRSIPFKVVCLLGMN+G+YPR L PLGFDLM++K ++GDRSRRDDDRYLFLEAL Sbjct: 641 FCTLMPMRSIPFKVVCLLGMNEGIYPRILPPLGFDLMAKKRQKGDRSRRDDDRYLFLEAL 700 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 +SAQQ LYISYIGRSIQDNS+R+PSVLV EL++YIG S+ LPGDE N DES ARV HL Sbjct: 701 LSAQQYLYISYIGRSIQDNSQRYPSVLVSELLEYIGNSYVLPGDENRNSDESMARVIQHL 760 Query: 781 TCLHTRMPFDPQNYQPG-ERQSYAREWLPAA----SQAGKAHSEFVQPLPFTLPETVPLE 835 HTRMPF +N+ G E+QSYA EWL AA + + +F++PL + L+ Sbjct: 761 LFCHTRMPFSAKNFIKGTEQQSYAIEWLEAAKKHTQEQKQPQDDFIKPLVSEPFSEITLD 820 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 L F+ HP++AFFQ+RL V FR E E+ + EPFIL L+RYQ N +LLNAL+EQ + + Sbjct: 821 ELINFYRHPIKAFFQLRLGVQFRVEQKELSNEEPFILAPLARYQFNTELLNALIEQKNVD 880 Query: 896 RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ--SMEIDLACNGVQIT 953 +L+ R +A+G LP+G FGEI+W+ Q EM +A ++ + +E++ ++ Sbjct: 881 QLYARMQASGRLPFGHFGEIYWQQQKNEMGLIAKKIQTETGHTEFCRLEVNTTLGERTLS 940 Query: 954 GWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAA 1013 GW+ Q DGL+RWRPS L++ G+ LW+EHL YC SGG GESR++ +K+ WRF L+ Sbjct: 941 GWIAHAQTDGLIRWRPSTLTIVDGLLLWIEHLAYCLSGGKGESRIYGKKESVWRFSALSQ 1000 Query: 1014 EQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQ 1073 +A +LS IEGY++GM PLL+L SG AWL CYD +N +L D+ T KA+ L Sbjct: 1001 SEAEQHLSLFIEGYQKGMIQPLLLLNHSGWAWLTKCYDLKNRHILWDEKTQAKAKDHLLT 1060 Query: 1074 AYEGN--MMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 ++GN VRGEGDD + QRL+R + ++ I+++++ +LLP+ N Sbjct: 1061 VFQGNPKTGVRGEGDDPYIQRLFRSINDTHVDRILQEAKNYLLPIAHHNI 1110 >UniRef50_D0ICS0 Exodeoxyribonuclease V gamma chain n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0ICS0_VIBHO Length = 1131 Score = 1226 bits (3173), Expect = 0.0, Method: Composition-based stats. Identities = 519/1131 (45%), Positives = 712/1131 (62%), Gaps = 25/1131 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN+LD+L++L+ I++ + LD+PF+ E+ILVQS GMAQWL++ ++++ GIAAN+ Sbjct: 1 MFTVYHSNQLDLLKSLLVAIIQSKPLDNPFQKELILVQSPGMAQWLKLEMAKEQGIAANV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +FPLPA+FIW MF ++L ++P+ S FNK++M+WKLMT+LP+ L+ DF LR YL D D Sbjct: 61 EFPLPATFIWQMFTQILDDVPQRSFFNKEAMTWKLMTVLPEKLDEPDFDELRRYLDGDDD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 ++KL+QL+ K AD++DQYLVYRP+W+ WE V+ L E + WQA LW+AL +YT QLG Sbjct: 121 QQKLYQLAGKIADIYDQYLVYRPEWIKAWENEQPVDELAEEKRWQAVLWQALYDYTLQLG 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLP--SRVFICGISALPPVYLQALQALGKHIEIHL 238 Q +HRANLY+ FI+ L S P GL RVF+ GISALPP YL AL+ALG+HI++H Sbjct: 181 QSPFHRANLYEEFIDVLSSHKEKPEGLQGIDRVFVFGISALPPRYLDALKALGEHIDVHY 240 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 +FTNPCRYYWGDI+D YLAK R ++ A L D +VGN Sbjct: 241 MFTNPCRYYWGDIRDKRYLAKRAASMAPR--ISRASDTEEPAQFALPLMGEDDTAEVGNS 298 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 LLAS GKLGRD + L+S+L+ + FV+V D+LLH+IQ+DIL+L V NI+E Sbjct: 299 LLASMGKLGRDNLLLISELQCHEVDQGFVEVPRDSLLHHIQADILDL----VEPENIQET 354 Query: 359 SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 S++K P+ D S+ VCHSP REVEVLHDRLL MLE DPTL+PRDIIVMVADI++Y Sbjct: 355 LTSESKLPVSADDRSLMVEVCHSPMREVEVLHDRLLDMLESDPTLSPRDIIVMVADINAY 414 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 SP IQAVFG+AP +R++P++ISDR A Q P+L F+ LLSLPDSR + ++L +L++P Sbjct: 415 SPAIQAVFGNAPGERFIPFSISDRTADQESPILTTFLRLLSLPDSRCSAAELLEILELPA 474 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 + +F ++ WV E+GIRWG+DD+ LP Q+TW FGL RMLLGYAM Sbjct: 475 VMRKFGFDNRQFEKVKLWVEEAGIRWGLDDNTASHFSLPHQHQNTWLFGLNRMLLGYAMP 534 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 S+ G + VL YDE GL AEL G L + + + L + E W+ + + Sbjct: 535 SSAGLYNDVLAYDEVQGLEAELAGKLGAFFRVMTATQTALLDTKNGEGWIQTLTSLFDDM 594 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 F D + E A LI Q + + A + + L ++RD L ++L ER+SQRFLAG Sbjct: 595 FALDTDEELAGQLIRTQLDNWLTQLDDAGFTQTLALPIVRDYLKEKLGGERVSQRFLAGQ 654 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 VN CTLMPMRSIPF+VVCLLGMNDG YPR +AP+GFDLM+ + + GDRSRRDDDRYLFLE Sbjct: 655 VNFCTLMPMRSIPFQVVCLLGMNDGDYPRTIAPVGFDLMAGRTRAGDRSRRDDDRYLFLE 714 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 AL SAQQ+LYISY+GRS+QDNSE+ PSVLV EL+DY Q + L GD++L ES R+ Sbjct: 715 ALQSAQQRLYISYVGRSVQDNSEKVPSVLVTELLDYCRQGYCLAGDQSLPEHESGQRLLG 774 Query: 779 HLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF-----VQPLPFTLPETVP 833 L + +PF Q + R SYA EWLPAA G A + F + P P + Sbjct: 775 TLVHHNPLVPFSKQAFSQNRR-SYAAEWLPAARGEGHAAAPFLDGRALNPAPDLDIGVIE 833 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 L LQRFW PV+ FF RL+V F + + + + EPF L+ L RYQ+ LL+ ++ + D Sbjct: 834 LAELQRFWRLPVQYFFNRRLKVFFESPEGAMEEAEPFALDNLRRYQLRDALLSHVMAKGD 893 Query: 894 AE----RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ-PGQSMEIDLAC- 947 +E F++ +A+G LP FGE+ E++ + R+ Q++EI+L Sbjct: 894 SEASLDAFFKQQKASGALPLSHFGELALESEQAGILAQYQRLKPMIADKRQALEINLTLV 953 Query: 948 ---NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG 1004 V++ GWL + G + +R + + W++HL CA+G ++ F+ D Sbjct: 954 TSRGTVKLQGWLDERYRAGRILYRSGKVRAQDRLSAWIDHLCQCAAGEALDT-CFIGVDE 1012 Query: 1005 EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 + + ++AE A+ L +E Y G APL LP + A L C D +DD T+ Sbjct: 1013 DVVWSAVSAESAITALVDYVEYYLAGTEAPLAFLPNTAMAGLSACIDKDG-HWSEDDVTM 1071 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLP 1115 KAR+K A+EG MV GEG++ + R+W Q ++ + E + LLP Sbjct: 1072 DKARSKMRAAFEGGYMVSGEGENTYIARVWPQADDALLDTVFELGKAVLLP 1122 >UniRef50_A6FE97 Putative exodeoxyribonuclease V n=1 Tax=Moritella sp. PE36 RepID=A6FE97_9GAMM Length = 1130 Score = 1205 bits (3119), Expect = 0.0, Method: Composition-based stats. Identities = 501/1136 (44%), Positives = 684/1136 (60%), Gaps = 28/1136 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +YHSN+LD+L+ LM + ++ L DPF E +LVQS GMAQW++M L++ GI+ANI Sbjct: 1 MFNLYHSNQLDILKELMAHFIAKDPLADPFVEEQVLVQSPGMAQWVKMELAKSMGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPASFIW MF +VLP+IP +SAFNK++MSWKLM +LP+LL +F L+HYL DD D Sbjct: 61 TFPLPASFIWKMFQKVLPDIPDKSAFNKEAMSWKLMLILPELLVLAEFESLKHYLADDQD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 +LFQL K +D FDQYLVYRP+W+A WE G + + WQ LW+ LV T LG Sbjct: 121 DYRLFQLCQKISDTFDQYLVYRPEWIAGWEGGDNM--HADTHPWQPLLWRELVAKTEVLG 178 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q +HRANLY +FI L S+T LP R+F+ G+SALPP YL ALQAL H EIH + Sbjct: 179 QSHYHRANLYDQFIARLNSSTFDAKLLPDRIFVFGVSALPPRYLDALQALAMHTEIHFML 238 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRH--SFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 +NPCR YWGD+ DP +L K T H + + D + LF+ D VGNP Sbjct: 239 SNPCRLYWGDLIDPKWLLKQRTMVNHHNVTLGMSDKVSANDEQTVRALFDEDDAFKVGNP 298 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE-- 356 LLAS GKLGRD + LL+ QELD FV+ T D LL +IQ DIL+L +R++A N+ Sbjct: 299 LLASMGKLGRDNLALLTGFGC-QELDVFVEPTDDGLLASIQRDILDLADRSMAEFNVSQQ 357 Query: 357 --EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 S K P++P DSS+ H CHSP RE+EVLH+ LL M E+P L PRD+++M+ D Sbjct: 358 DTNTRDSRYKLPINPADSSLELHSCHSPMREIEVLHNNLLTMFSENPDLNPRDVVIMMPD 417 Query: 415 IDSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 ++ YSP+IQAVFG+ +RY+P++ISD A+ +P+L +F+ LL+LP SR ++L+ Sbjct: 418 VNGYSPYIQAVFGAMDRYDERYIPFSISDSGAQYDNPILLSFLQLLTLPLSRCNVSELLS 477 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 LL+VP + ARF IT + LRQW++ESGIRWG+D+D+ +LP Q+TW FGL RML Sbjct: 478 LLEVPAVLARFAITPDEFNRLRQWIDESGIRWGLDEDDATRFDLPGMKQNTWLFGLHRML 537 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LGYA +Q +LPY E G+ AEL+G LA + L L + + +W+ + Sbjct: 538 LGYAYGG-DDIYQGILPYQEVQGIEAELLGKLAHFIEALLDSLTSLQDPKSIADWIKLGN 596 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 +++ F+ D + E ++ +I + + + A Y + +LR L L Q SQ Sbjct: 597 TLIDNFYKIDVDDEQSIKMIRDAFSHLDEQLKSASYDKHITPLVLRHYLNNALSQVGASQ 656 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 +FLAG VN CTLMPMRSIPFKV+CLLGMNDGVYPR + P+GFDLM+ K+GDRSRRDDD Sbjct: 657 KFLAGQVNFCTLMPMRSIPFKVICLLGMNDGVYPRSIPPMGFDLMANDLKQGDRSRRDDD 716 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEALISAQ KLYISYIG SI+D SER PSVL+ EL+ Y QS + GDE L+ DES Sbjct: 717 RYLFLEALISAQSKLYISYIGSSIRDKSERLPSVLITELLQYCQQSFCITGDEGLSPDES 776 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP--- 829 A++ HL H PFD + + P S+A+EWLPA + + +PLP + Sbjct: 777 AAQLLTHLIQHHALQPFDARYFNPQAPTSFAKEWLPALAPVVELRQFLTEPLPALISNDD 836 Query: 830 -ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 + V L L RF+ HP + FF RL+V F ++ D EPF ++ L +Y + QLL Sbjct: 837 MQEVELAELLRFYRHPTKYFFNRRLKVYFNQASLDVLDDEPFDVDNLEKYHLKAQLLETE 896 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDLAC 947 + D + R A+G LP G FG+I + + + QLA ++ +E+D+ Sbjct: 897 LMGGDISLVTERLVASGSLPLGRFGKISLDKEVSTVSQLAQVLMPLLTNSNDDIEVDIPL 956 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL----RKD 1003 ++ GWL + GL+R +PS + +Q+WLEHL +C S N + + K Sbjct: 957 VSGRLFGWLKHIYNGGLVRHKPSGFNGKDYLQVWLEHLCFCISIKNPAATTLVHLTAGKP 1016 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 R + +A L QL E Y +G PL + P++G W KT A LDD Sbjct: 1017 VVQRLRVIDQSRARELLFQLFEVYNDGCCQPLALFPKTGWGWAKT---KCTTAALDDY-- 1071 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 K R + + +EG GE D + QR + +L E + + S+ L P+F + Sbjct: 1072 --KLRAEAVLNFEGGYNRMGENADDYLQRSFPRLNDEVYKLMSASSESVLFPIFEY 1125 >UniRef50_B6EGE9 Exodeoxyribonuclease V gamma chain n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EGE9_ALISL Length = 1127 Score = 1185 bits (3065), Expect = 0.0, Method: Composition-based stats. Identities = 487/1130 (43%), Positives = 690/1130 (61%), Gaps = 32/1130 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN+LDVL++L+ ++ LD+PFE E ILVQS GM+QWL++ L+++ GIAAN+ Sbjct: 1 MFTVYHSNQLDVLKSLVVELIRLNPLDNPFEQEQILVQSPGMSQWLKIELAKELGIAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPA+FIWD+F +VL ++PK SAFNK++M+WK++TLLP+LL++++F L+ YL +D Sbjct: 61 TFPLPATFIWDLFTQVLDDVPKRSAFNKEAMTWKIVTLLPELLKQDEFAPLQRYLENDDK 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + K +QL++K AD+FDQYLV+RP+W+ +WE G V L WQ LW+AL + T LG Sbjct: 121 QLKCYQLAAKIADIFDQYLVFRPEWIQKWEAGEEVIELEGEHPWQPILWQALYDQTLALG 180 Query: 181 QPRWHRANLYQRFIETLES---ATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 +HRAN+++ FIETLE+ T P G+P R+F+ GI++LPP YL AL ALG+HI++H Sbjct: 181 HSPYHRANMFEHFIETLENYLQTGTLPKGMPKRLFVVGITSLPPRYLDALAALGQHIDVH 240 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 L+FTNPC++YWGD++D YLAKL + R +L + + + N Sbjct: 241 LMFTNPCQHYWGDLRDNKYLAKLDRQNRIAKRLSSDLSTLENDD------SDLFTNKSEN 294 Query: 298 PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LLASWGKLGRD LL DLE + E FV ++LLH+IQSDIL LE R+ V Sbjct: 295 SLLASWGKLGRDNFQLLLDLEPN-EYKIFVPTGREDLLHSIQSDILNLEERSRDDV---- 349 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 S++K+P+ P D SI H CHSP REVEVLHD+LL M DP L PRDIIVMVADI+ Sbjct: 350 LDNSEHKQPISPDDRSILLHSCHSPMREVEVLHDQLLDMFANDPELKPRDIIVMVADINV 409 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 YS IQAVFG+A DRY+P+AISD+ A Q +PVL AF++L++LP++R ++L+LL+VP Sbjct: 410 YSAAIQAVFGNAAFDRYIPFAISDQSAEQENPVLLAFMNLMALPENRCGLSELLSLLEVP 469 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + +RF E +++W E+GIRWG+D+ +LP Q++W FG+ RMLLGYAM Sbjct: 470 AVMSRFKFNAEQFEIVKRWAEETGIRWGLDNSTSAHFDLPEHNQNSWLFGIQRMLLGYAM 529 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 E G ++ + Y++ G+ AE+ G+LA + QL ++ L Q + + W + +++ Sbjct: 530 EQDAGLFEGMASYEQVQGMNAEIAGNLAHFIDQLLTYQITLGQAQKINAWRTIINQLMDD 589 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F L + E E + I Q Q + A + + ++ + L L + SQRFLAG Sbjct: 590 FLLVELEGELVVKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLAG 649 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 VN CTLMPMRSIPF V+CLLGM DG YPR + GFDLM ++ K GDRSRRDDDRYLFL Sbjct: 650 KVNFCTLMPMRSIPFDVICLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRYLFL 709 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 EAL SA + Y+SYIGRSI+DN+E+ PSVLV EL++Y QS+ L GD LN +ES + Sbjct: 710 EALQSANKAFYLSYIGRSIRDNTEKAPSVLVSELLEYCQQSYCLDGDSELNPEESAKHLV 769 Query: 778 AHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE--TVPLE 835 LT H +P+ Q++ G+ SYA EWLP A G+A EF PE + L Sbjct: 770 KKLTIEHPLVPYSQQSFV-GDNTSYASEWLPTAKLEGQAAPEFQTEPLVFAPESKELELT 828 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 LQRFW PV FF L+V F T +S + D EPF ++G + Y + +LL L+ DD Sbjct: 829 ELQRFWRLPVAYFFNRGLKVFFETVESRVEDDEPFSIDGRTGYGMKSELLEELLAYDDPN 888 Query: 896 -------RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC-RQPGQSMEIDLAC 947 +++ +A G LP G+FGEI + + +++L D + P + E+ L Sbjct: 889 QVFQLSREFYQQQKAQGKLPIGSFGEIAADKEVNTVKELVDHIQPLTTSPLEDQEVRLRF 948 Query: 948 ----NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKD 1003 +++ GWL Q +G+LR+R + + + W++HL CA + LF D Sbjct: 949 TFPHGEMELQGWLKQRYKEGMLRYRGGKIRSHEVLATWIDHLCLCAMKQQQFTHLF-GTD 1007 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 + F P+ E+A +L ++ Y G APL LP++ A L+ D + DDD T Sbjct: 1008 AIYHFEPIETEKAYQHLEVILSLYISGNCAPLPYLPKAALAGLEAHIDKKG-VWNDDDET 1066 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFL 1113 +KA K Y G GE + + R+W + E + I + ++ L Sbjct: 1067 HEKALKKMADEYSGTRYA-GENSNDYVMRMWPEWNDELGQTIFDNAKNVL 1115 >UniRef50_C9PLM5 Exodeoxyribonuclease V gamma chain n=5 Tax=Gammaproteobacteria RepID=C9PLM5_VIBFU Length = 1173 Score = 1180 bits (3053), Expect = 0.0, Method: Composition-based stats. Identities = 522/1163 (44%), Positives = 720/1163 (61%), Gaps = 62/1163 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYH+N++D L+ L+ +++ + L +PFE E ILVQS GM+QWL+M L+Q+ G+AAN+ Sbjct: 1 MFTVYHANKVDTLKILLVHLIKNDPLANPFEKEQILVQSPGMSQWLKMALAQELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPA+FIW+MF +VLP +PK SAFNK++M+WKLM LLP L+++ F LR YL DD+D Sbjct: 61 DFPLPATFIWEMFTQVLPNVPKRSAFNKEAMTWKLMELLPSQLDQDVFAPLRRYLQDDTD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + KL+QL+ K AD+FD YLVYRPDW+A WE G V + WQ LWKAL +YT G Sbjct: 121 QSKLYQLAEKIADIFDGYLVYRPDWIAHWEAGESVAEIDGEHPWQPVLWKALYDYTLAQG 180 Query: 181 QPRWHRANLYQRFIETLESAT-----TCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Q +HRANLYQ FI+ L LP R+FI GIS+LPP Y+ AL+ALG+HI+ Sbjct: 181 QSHYHRANLYQSFIDALAHIDLTHDEALRAALPKRLFIFGISSLPPRYMDALKALGEHID 240 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRH------------SFEDRELPLFRDSENA 283 +HL+FTNPC++YWGDI+D YLA++ +++R+ + E PL + ++ Sbjct: 241 VHLMFTNPCQHYWGDIRDRKYLARVESQRRKQLVLHPNAETHTFTVEGEVSPLKGELDDY 300 Query: 284 GQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDIL 343 Q VGN LLAS GKLGRD +YLL+ + ++E + F+DV D+LLH +Q+DIL Sbjct: 301 AGDELHTA-QAVGNSLLASMGKLGRDNLYLLAQSD-NEEHELFIDVPRDSLLHQLQADIL 358 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 LE + S +K L D S+T H CHSP REVEVLHD LLAM + DP L Sbjct: 359 HLEEHQ----DDTLLDSSAHKPALPHGDRSLTLHACHSPMREVEVLHDELLAMFDRDPEL 414 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 PRDIIVMVADI++YSP+IQAVFG+AP +R++PY+ISDR A Q P+L AF+ L++LP S Sbjct: 415 KPRDIIVMVADINAYSPYIQAVFGNAPGERFIPYSISDRTADQESPILNAFMQLVALPQS 474 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 R ++ ++L LL+ P + ARF + ++WV ESGIRWG++D +E ELP T Q+T Sbjct: 475 RCLASELLELLETPAMMARFALDASEFDTAKRWVEESGIRWGLNDATAQEFELPQTHQNT 534 Query: 524 WRFGLTRMLLGYAMESAQGEWQS----VLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 W+FG+ RMLLGYAM S+ G +++ + PY+E G+ AEL G LA + ++ +R+ LA Sbjct: 535 WQFGIARMLLGYAMPSSVGLFEAGGHAMAPYNEVQGMSAELAGKLAHFIDTISDYRQRLA 594 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 Q +P+E W + +L+ F D + E A+ I A+ + A Y DA+ +++ Sbjct: 595 QTQPIEAWRELLSSLLDDCFSVDLDGEMALKSIRDTLAALKEQLADAGYADAISPAIMGQ 654 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 L +L R+SQRFLAG VN CTLMPMRSIPF VVCLLGMNDGVYPR + P GFDLM+ Sbjct: 655 YLHDKLSGTRVSQRFLAGQVNFCTLMPMRSIPFNVVCLLGMNDGVYPRSMPPEGFDLMNG 714 Query: 700 KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 + + GDRSRRDDDRYLFLEA++SAQ LYISY+GRSIQDN+ER PSVLV EL++Y Q++ Sbjct: 715 RTRPGDRSRRDDDRYLFLEAMLSAQHTLYISYVGRSIQDNTERVPSVLVTELLEYCQQNY 774 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSE 819 L GDEAL DES AR+ L H +PF PQ + SYA+EWLPAA + G A Sbjct: 775 CLAGDEALPSDESGARLIEQLQFTHAMVPFSPQAFLTDV-GSYAKEWLPAALRQGTASGT 833 Query: 820 FVQP-----LPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 F + L P + L LQRFW PV+ FF RL+V F + D EPF L G Sbjct: 834 FHRALDDYLLDAIYPLELDLVELQRFWRLPVQYFFNRRLKVVFEPPLPVMEDDEPFALGG 893 Query: 875 LSRYQINQQLLNALVEQDDAE-------RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL 927 L+ YQ+ LL+ L+ A+ + ++ RA G LP GAFGE+ +ET + ++L Sbjct: 894 LASYQLRDALLDGLLNAPSAQARDEVLAQFNKQQRAQGKLPVGAFGELEFETNRVQAEEL 953 Query: 928 ADRVI-ACRQPGQSMEIDLAC------NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQL 980 ++V C+ P ++++L V ++GWL + GL+R+R + + Sbjct: 954 VEKVQFLCQAPLDDLDVNLTLTALGQSRPVHLSGWLTRRYQSGLVRYRSGAIRSEDMLAA 1013 Query: 981 WLEHLVYCASGGNGESRLFL--RKDGEWR--FPPLAAE------QALHYLSQLIEGYREG 1030 W++HL ASG N + + RKDG PPL A AL L++L Y +G Sbjct: 1014 WIDHLAAAASGANLITHVIGYDRKDGVVHQVLPPLNANASESAALALAQLNELARLYYQG 1073 Query: 1031 MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWY 1090 M+APL P++ A ++ + +DD+ +K+ K + + M GEG++ + Sbjct: 1074 MTAPLAYFPKTALASVEAGF--SRGQWVDDE---EKSLKKMAETFNDGFMTSGEGNNHYI 1128 Query: 1091 QRLWRQLTPETMEAIVEQSQRFL 1113 RLW Q T E + + L Sbjct: 1129 ARLWPQWTDELAHQVRVLASLVL 1151 >UniRef50_A1SUW0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Psychromonas RepID=A1SUW0_PSYIN Length = 1149 Score = 1177 bits (3045), Expect = 0.0, Method: Composition-based stats. Identities = 470/1148 (40%), Positives = 671/1148 (58%), Gaps = 43/1148 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M RVYHSN+L +L+ L+ +++ +L DPF E ILVQS GMAQWLQ+ ++Q GI+ANI Sbjct: 1 MFRVYHSNQLALLKDLLVALMQGAKLTDPFASETILVQSPGMAQWLQLEIAQSTGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASFIW F VL ++P +S FNK SM+W++M LLP LE DF+ L HYL DD Sbjct: 61 DFPLPASFIWQQFKHVLKDVPDKSPFNKMSMTWQIMRLLPDCLEDPDFSALLHYLEDDLY 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETG-------------HLVEGLGEAQAWQAP 167 RK FQLS K AD+FDQYLVYRP+W+A WE + E Q WQA Sbjct: 121 LRKRFQLSQKIADIFDQYLVYRPEWIAAWENASEQEISQWHAENTESIPAWLEDQRWQAK 180 Query: 168 LWKAL---VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYL 224 LWK L + + + +HRA LY+ F++TL + T LP R+F+ GISALP YL Sbjct: 181 LWKKLTLTIAESFKAQGKAYHRAGLYKDFLDTLATKKTL-EHLPKRIFVFGISALPESYL 239 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRR----HSFEDRELPLFRDS 280 QAL L +H ++H L TNPCRYYW DI DP LAK + R+ E + LP Sbjct: 240 QALLGLAEHCDVHFLLTNPCRYYWADIVDPKLLAKRFAQSRQKLTVSGGEIKNLPDSSWQ 299 Query: 281 ENAGQLF---NSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHN 337 ++A L ++D + +VGNPLLAS GK+GRD+++ L LE QE+DAFVD+T D+LLH+ Sbjct: 300 KDASHLQWSQSNDPDNEVGNPLLASMGKMGRDFLFQLYSLEQ-QEVDAFVDITRDSLLHH 358 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 IQ+D+L+L++ + A + L P +S+T H+CHS REVE+LHD LLAM Sbjct: 359 IQADVLDLQDSSQALSKDPS-----ARISLAPEGNSLTLHLCHSVMREVEILHDNLLAMF 413 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 D LTP+DIIVMV DID Y+P++QAVF S +RY+P++ISD A+Q +P+L +F+ L Sbjct: 414 AADNNLTPKDIIVMVPDIDQYAPYVQAVFASVEQNRYIPFSISDVSAQQENPILISFLQL 473 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L+L +R+ ED+LALL+VP + RF++ ++ L++W+NESGIRWG+D+ + + +LP Sbjct: 474 LNLNQTRYTREDILALLEVPAILQRFNLNQDEFVLLQKWINESGIRWGLDEKSAAQWDLP 533 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 Q++W FG+ RMLLGYA+ ++ + YDE GL +L+G + L + G Sbjct: 534 RLSQNSWLFGIRRMLLGYAISD--TLFEGISAYDEIQGLQGDLLGRFIDFIDALIKLQEG 591 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 L Q +W +L F+ D + ++LI + ++ A + + L +L Sbjct: 592 LKQSYNANQWQAFVYQLLEDFYQEDDDNTMVLSLIRNEMDNLLDHTGQADFTQPISLFVL 651 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 + L Q L + SQRFLAG VN CTLMPMRSIPFKVVCLLGMNDG YPR + P+GFDLM Sbjct: 652 IEHLEQHLSDQGNSQRFLAGQVNFCTLMPMRSIPFKVVCLLGMNDGQYPRNIVPMGFDLM 711 Query: 698 SQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ 757 + KRGDRSRR++DRYLFLEAL+SAQ+K YISYIGR I DNSE+ PSVLV EL++Y Q Sbjct: 712 AGHRKRGDRSRREEDRYLFLEALLSAQEKFYISYIGRDINDNSEKMPSVLVSELLNYCQQ 771 Query: 758 SHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPA---ASQAG 814 S L ++ +E +KA ++ + F + YQ G+ ++Y W A A AG Sbjct: 772 SFVLKDNQQDQNRVAEKALKAFISFHYPMQSFSERYYQ-GDVKTYNPNWWAALKDAKNAG 830 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 + + + L +L E VPLE L++F HP + FF RL V F +D + + EPF Sbjct: 831 EKSHKRLLTLDQSLTE-VPLEQLKQFLKHPCKVFFNQRLDVYFELDDDQQENDEPFSFNH 889 Query: 875 LSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC 934 L +Y + + +E + LF RAAG LP+G F + + + M+ LAD + Sbjct: 890 LQQYVLKHEQFEYALEGKSLDNLFIEKRAAGKLPFGEFAALIFTKDLEPMENLADLTTSY 949 Query: 935 -RQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN 993 +++ ID+ ++ G L GL+R + + + LWLEHL YC + G Sbjct: 950 FIGEIETINIDIQFAEKRLFGELNDHCEKGLVRVKTGNIKGKDILTLWLEHLCYCIASGQ 1009 Query: 994 GESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQ 1053 + L + + F L A+ A + +S+L+ Y G+ PL +S AW + + + Sbjct: 1010 NLNSTLLGQKEGFYFKELPADYAYNRISELLALYEAGLQQPLPFFIQSAFAWCEQVHKLE 1069 Query: 1054 NDAMLDDD---STLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQ 1110 + + DD +T+ +A+ + + EG D + R + L +A + Sbjct: 1070 PNCFVFDDLEFATIAEAQQVASLCFSNDRGFS-EGQDPYINRCYENLED-HWDAFQPLAL 1127 Query: 1111 RFLLPLFR 1118 + +P+ Sbjct: 1128 KIFMPILS 1135 >UniRef50_Q2BKD9 Exodeoxyribonuclease V, 125 kDa subunit n=2 Tax=Neptuniibacter caesariensis RepID=Q2BKD9_9GAMM Length = 1092 Score = 1163 bits (3010), Expect = 0.0, Method: Composition-based stats. Identities = 474/1121 (42%), Positives = 663/1121 (59%), Gaps = 40/1121 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +VYHSN L VL+ L+ ++ R+ + DPF E ILVQS GMAQWL++ L+ K GIAA+I Sbjct: 1 MFQVYHSNSLLVLKDLLTELIRRDPISDPFVAEQILVQSPGMAQWLKLELADKSGIAASI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASF+W F VLP++P+ SA+NK++MSWKLM +LP +L++ F+ L+ YL DD D Sbjct: 61 DFPLPASFLWKHFSEVLPDVPERSAYNKEAMSWKLMAVLPAMLKQPVFSALQQYLADDDD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + +L+QL +K AD++DQYLVYRPDW+ WE G + WQ LW+ L YT L Sbjct: 121 RFRLYQLCNKIADIYDQYLVYRPDWIEDWEQGGDIAA--ARHPWQPVLWRELKSYTEDLQ 178 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q WHRAN++ F++ L++ + LP R+F+ GISALP Y+ ALQALGK I++HL+ Sbjct: 179 QSHWHRANMFSAFVDGLKNPSAA-EKLPRRLFVFGISALPQNYVHALQALGKRIDVHLMV 237 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPCRYYWGDI D + +A+L R D + GNPLL Sbjct: 238 MNPCRYYWGDILDQSQIARLNRRWFSKPDLD------------------FSDYAEGNPLL 279 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS GKLGRDY+Y L D + E+DA+ D +LL IQ DIL+LEN E+ Sbjct: 280 ASMGKLGRDYLYQLQD-NALDEIDAYADPERGSLLSAIQQDILDLENPTRL---PEQIDN 335 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 S K LD D SI H CHS RE+EVLHD+LL M E++P L PRD+IVM+ D+ +Y+P Sbjct: 336 SHGKHRLDREDRSIELHSCHSALREIEVLHDQLLDMFEKNPLLKPRDVIVMMPDVAAYAP 395 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I+AVF +APA+RY+PY+ISDR RQ +P+L +F +L L SRF DVL LL+VP + Sbjct: 396 YIEAVFANAPAERYIPYSISDRSNRQENPLLLSFEKILKLNSSRFTVSDVLELLEVPAVM 455 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 R + E+ + LR WV++ IRWG+D + ELP Q++WRFG+ RML+GYA+ Sbjct: 456 RRVGLDEKSFQKLRFWVDQVNIRWGMDSEQRSIWELPLFEQNSWRFGIKRMLVGYALGEG 515 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 WQ V PY E GL +EL+G LA + L+ R Q+ W+ V +L +F Sbjct: 516 SEYWQGVAPYTEIEGLESELLGKLAGFIDLLDETRLHFTQDHEFSTWIEVINQILENYFT 575 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 D + E ++ I + Q + + A Y A+ S++ L ++Q+R SQRF+ G VN Sbjct: 576 ADEQDEISLNTIRKTLQGLQEQLKDANYSQALSPSVIAHYLIDGINQQRSSQRFMVGSVN 635 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 CTLMPMRSIPF VVCLLGMNDG YPR + P+GFDLM+ P+RGDRSRRDDDRYLF+EAL Sbjct: 636 FCTLMPMRSIPFSVVCLLGMNDGTYPRSIPPVGFDLMTDYPRRGDRSRRDDDRYLFMEAL 695 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 +SAQ+KLYISYIGRSI+DN+E+ PSVLV EL+DY Q + L GDE L+C S +++AH+ Sbjct: 696 LSAQEKLYISYIGRSIRDNNEKIPSVLVSELLDYAEQGYVLEGDEELSCSNSGEKLRAHI 755 Query: 781 TCLHTRMPFDPQNY-QPGERQSYAREWLPAASQAGKAHSEFVQP-LPFTLPETVPLETLQ 838 H + F P+ + G+ S+A EWLPAA +A F+ L + L+ L Sbjct: 756 KTQHPLVAFSPEYFKSAGDYFSFASEWLPAAQAESRAAEVFLTEDLTSEALPELELKQLI 815 Query: 839 RFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF 898 F P R+FF RL+V F + E D EPF L+ LS Y + Q+ L + ++ D ERL Sbjct: 816 SFLRDPCRSFFNNRLKVYFGNSEIEAQDEEPFSLDNLSSYLLKQRYLQSALQDRDLERLD 875 Query: 899 RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-GQSMEIDLACNGVQITGWLP 957 + A G LP GE+ + +LA+++ + Q +EI+L+ V++ GWL Sbjct: 876 KAILAEGRLPLARAGELNLNKLRHDSLELAEKLKPLSEGTPQRIEINLSIGEVKLQGWLD 935 Query: 958 QVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQAL 1017 PD LLR+RP+ ++ + W+EHL CAS + ++ G+ + + AE+A Sbjct: 936 SCYPDHLLRYRPAQVNARDRLSTWVEHLALCASNQACRNTVYRGLSGKVFYKAVPAEKAT 995 Query: 1018 HYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEG 1077 L+ LI Y++G +AP S + + K + + G Sbjct: 996 ELLADLIRFYQQGQTAPQAFDAGSAHKYFE-----------QQAKDPDKVMSALENQFYG 1044 Query: 1078 NMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + G D+ + +R + P + + ++R PL Sbjct: 1045 SAYSNGLQDNPYLRRAFSDFEPFVTQ-FIPLAERIYEPLLS 1084 >UniRef50_A5GC93 DNA helicase/exodeoxyribonuclease V, gamma subunit n=7 Tax=Geobacter RepID=A5GC93_GEOUR Length = 1091 Score = 1133 bits (2932), Expect = 0.0, Method: Composition-based stats. Identities = 390/1134 (34%), Positives = 593/1134 (52%), Gaps = 75/1134 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L++Y SNR++ L + +VE+ L PF PE I+VQS GM +WL M L+++FG+ AN + Sbjct: 3 LKIYTSNRMETLVDQLAGVVEK-PLPSPFTPETIVVQSKGMQRWLAMELARRFGVWANGE 61 Query: 62 FPLPASFIWDMFVRVLPEI---PKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 FP P + + +F V+P++ P+ S+F+ ++W+LM LLP L F L YL DD Sbjct: 62 FPFPNAVVETLFRAVIPDLAETPQVSSFHPDVLTWRLMELLPSCLGGPGFEPLAGYLADD 121 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQ 178 D K QL+ K AD FDQY +YRP+ L WE G WQ LW+ LV Sbjct: 122 GDGLKRLQLAEKIADTFDQYTIYRPELLLSWEEG-------AEGGWQGLLWRELVRNATD 174 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 HRA L F + T LP R+ + GI LPP +++ L + + EI+L Sbjct: 175 -----RHRAALLAEFRRRINRPDTAAAELPRRISLIGIPTLPPFHMEVLSGIARQTEINL 229 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 NPCR YWG I LA+L R G + GNP Sbjct: 230 FLLNPCREYWGKIVSERELARLERR-------------------GLDEDPLHGYFETGNP 270 Query: 299 LLASWGKLGRDYIY-LLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LLAS G++GRD+ L+ D ++ D F ++ LLH IQ++IL+L +R AG Sbjct: 271 LLASMGRIGRDFFDSLIGDCGDAEFSDTFTEIRGSGLLHAIQANILDLRDRGAAG----- 325 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 ++ ++ D ++ H CHS RE+EVL+D++L++ + DPTL+PRDI+VM DI++ Sbjct: 326 -----DREVIEATDDTLRIHSCHSAMREIEVLYDQILSLFDNDPTLSPRDILVMTPDIEA 380 Query: 418 YSPFIQAVFGSAPA-DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y+P+I AVFG+ ++ +PY+I+DR R+ E +++L L SRF +VL +L+ Sbjct: 381 YAPYISAVFGTPEQPEQRIPYSIADRSLRREGETAEVLLAILQLCGSRFAITEVLDILEA 440 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 + RF +T++ L + QW+ + IRWGID +PA +++W+ GL R++LGYA Sbjct: 441 APVCRRFGLTDKDLETVHQWLTATNIRWGIDAMERTGHGVPAFSENSWQAGLDRLILGYA 500 Query: 537 MESAQGEWQS-VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 M + +LPYD G A L+G L + LA+ R +EEW V R +L Sbjct: 501 MAGEDRHFFGEILPYDHLEGSDALLLGRFLEFCETLFSRVQALARPRQIEEWTAVLRSLL 560 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 F D + E + + + + + A +G V + ++R L ++L E+ FL Sbjct: 561 GTFIKADGDDERDVATLLKVIERLDECRAHANFGGDVGIEIVRAWLGEKLGSEQRGFGFL 620 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL 715 G V C ++PMRSIPF+V+ LLGMNDGV+PR+ P GFDL++ P+RGDRS+RD+DRYL Sbjct: 621 TGGVTFCAMLPMRSIPFRVIALLGMNDGVFPRRNRPHGFDLIAASPRRGDRSQRDEDRYL 680 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 FLEAL+SA+++ ISY+G+SI+DNSE PSVLV EL+DYI + G+EA E Sbjct: 681 FLEALLSARERFSISYVGQSIKDNSELPPSVLVSELLDYIAKGFTRAGEEA-----DETA 735 Query: 776 VKAHLTCLHTRMPFDPQNYQP--GERQSYAREWLPA----ASQAGKAHSEFVQPLPFTLP 829 ++ H PF ++P G SY+RE L + + +PLP Sbjct: 736 AVRGISVRHPLQPFSRDYFRPNDGRLFSYSRENLHGVLAAIAPPAVPATFLSRPLPPAEE 795 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 V L L F+A+P + F + RL + D ++EPF L+ L +Y + Q+++ AL+ Sbjct: 796 TLVTLYDLAEFFANPCKHFLRRRLGIYLEQRDESFAESEPFSLDHLGKYMLGQEIVAALL 855 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR--QPGQSMEIDLAC 947 + + R+ G+LP G G I ++T A++V A P +EIDL Sbjct: 856 AGESLDNHRAVARSRGELPPGECGTITYDTLASAASDFAEQVAAATVGAPLPPLEIDLEF 915 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRL--FLRKDGE 1005 ++ G + ++ P+GL+ +R + L +++W+EH+ ++ G R L D Sbjct: 916 KESRLVGRIERIWPEGLVHYRYAKLKAKDRLRIWIEHICLTSAAPTGYPRTASLLASDVT 975 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 P++ +L L QL+ YR GMSAPL P+S + + D + A Sbjct: 976 VAIAPVS--DSLALLEQLLTIYRRGMSAPLPFFPKSALEYARKANDPKKAA--------- 1024 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 KA + + G+ GE +D +YQR + P E + S+ PL Sbjct: 1025 KALGDARKKWHGSEDYPGEKEDPYYQRCFGNEEPLDGE-FMALSRMVYDPLLAH 1077 >UniRef50_C4L7B2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B2_TOLAT Length = 1130 Score = 1126 bits (2914), Expect = 0.0, Method: Composition-based stats. Identities = 473/1143 (41%), Positives = 658/1143 (57%), Gaps = 43/1143 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M RVYHSN+LDVL++L+ +++ L E ILVQS GMAQWL+ L+Q G+AANI Sbjct: 1 MFRVYHSNQLDVLKSLLAHLIQLSPLQPALAAETILVQSPGMAQWLKQALAQDLGVAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLP+SFIW MF +VLPE+P+E+ + K +M W+LM LLPQ ++ F L YL +D D Sbjct: 61 TFPLPSSFIWQMFHQVLPEVPQENPYTKPAMLWRLMQLLPQCMDDVLFAPLAGYLAEDHD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 R+ +QL + ADLFDQYLVYRPDW+ WE+G E Q WQ LW+ LV T Q Sbjct: 121 GRRCYQLCQRIADLFDQYLVYRPDWIVDWESG--GAQGAETQLWQPVLWRKLVALTEQQA 178 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HR NL+ FI TL++ LP R+F+ GIS+LPP YL+AL ALG+H E+HLL Sbjct: 179 -SHLHRVNLFSSFINTLKAGK-PKAVLPQRLFVFGISSLPPHYLEALMALGEHCEVHLLL 236 Query: 241 TNPCRYYWGDI-----KDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 TNPCRYYWGD+ + L KLL ++R + + + QLF+ +GEQ Sbjct: 237 TNPCRYYWGDLQEENQINQRVLNKLLAQRREQWQQAEQHKPLLPETDWQQLFSDEGEQQ- 295 Query: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 GNPLL S GK GRDY+ LL+++ ++ E+DAF ++ D+ L + + Sbjct: 296 GNPLLVSLGKQGRDYLSLLAEISAA-EIDAFAEINGDS----------LLHLLQQDLLEL 344 Query: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 ++ +R KRP+ D S+ H CHSP REVEVLHD+LL DPTLTP++++VMVADI Sbjct: 345 QDGTRLRPKRPISASDRSLVLHGCHSPLREVEVLHDQLLQRFAADPTLTPKEVVVMVADI 404 Query: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 + Y P++QAVFG+A +RY+P++ISDR A Q +P+L++F++LLSLPD R + ++L LL Sbjct: 405 NRYGPYVQAVFGNATGERYIPFSISDRSATQENPLLQSFLTLLSLPDQRCTATELLELLA 464 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 VP L RF + E L LR+W ESG+RWG++ + ELP +HTW FGL RMLLG+ Sbjct: 465 VPALLKRFGLAEADLTTLRRWAMESGVRWGLESGDGERFELPPRERHTWSFGLERMLLGF 524 Query: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 A + + V PY G A +G LA + Q+ R L RP+ EW + +L Sbjct: 525 A-SGNETLFADVAPYTAIEGQNAVKLGQLARFIAQVMALRDELETARPITEWQNLVDRLL 583 Query: 596 NAFFLP----DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 F+LP + + AA+ LI Q+ QY + +PL++ D L L+ R Sbjct: 584 LDFYLPQEQLEEDDAAALNLIRSTLQSWQQRLSQMQYQEPLPLTVFHDHLQSELNAVRGG 643 Query: 652 QRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDD 711 Q+FLAG VN CTLMPMR+IPF++VCLLGMNDG+YPR + PLGFDLM+ +P++GDRSRR+D Sbjct: 644 QQFLAGRVNFCTLMPMRAIPFRLVCLLGMNDGLYPRSMPPLGFDLMADQPRKGDRSRRED 703 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE 771 DRYLFLEAL++AQQ+LYISY+ S DN + PSVLV EL++Y ++ LP DE E Sbjct: 704 DRYLFLEALLAAQQQLYISYVAHSAIDNRDLMPSVLVTELVEYCQRAFLLPEDEEKAETE 763 Query: 772 SEARVKAHLTCLHTRMPFDPQNYQP------GERQSYAREWLPAASQAGKAH---SEFVQ 822 E + HL H +P+D + + P + SYA EWLPA + G+A + Sbjct: 764 QETALHQHLLTGHPLVPYDRRYFSPTVPPATADLFSYAAEWLPALTPTGQAGFFDARLSL 823 Query: 823 PLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQ 882 P + L RF+ +PV FF+ RL+V F ++ + +TEPF L+ L +YQ+ + Sbjct: 824 PEELQGKPEIELADWLRFFRNPVAGFFRRRLRVQFVEREAALEETEPFWLDKLQQYQLRE 883 Query: 883 QLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC-RQPGQSM 941 +LL D R A G LP G FG + + + + LA + Q Sbjct: 884 RLLRYQRLDVDQAVWQARLLAEGMLPDGEFGRLALQADAKNLAPLAAALQTWPLATAQRE 943 Query: 942 EIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLR 1001 L G Q+ G + +V L+R R S L + + +WLEHL A+G + L Sbjct: 944 TFHLDFAGWQLLGSVGEVYAGQLVRHRVSKLKASWLVAIWLEHLALSAAGKLTQPTRLLA 1003 Query: 1002 KD----GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAM 1057 D GEW L+A+ A L + + EGM PL + + WL+ Sbjct: 1004 LDNGKLGEWLLAVLSADAAREQLLLWWQAFTEGMQRPLCLPVNTAWQWLEKATT--ESGC 1061 Query: 1058 LDDDSTLQKARTKFLQAYEGN-MMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPL 1116 L DD+ +AR + Y G+ V GEG D + R + +L+ E E I E + + LLPL Sbjct: 1062 LGDDAQQLQAREAAQKTYTGDGTFVSGEGQDTYLARCFPELSSEYWEEIEEWAVQLLLPL 1121 Query: 1117 FRF 1119 + Sbjct: 1122 RQH 1124 >UniRef50_A4SSU8 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Aeromonas RepID=A4SSU8_AERS4 Length = 1134 Score = 1118 bits (2893), Expect = 0.0, Method: Composition-based stats. Identities = 489/1164 (42%), Positives = 671/1164 (57%), Gaps = 82/1164 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +YHSN+LD+L+ L+ + + L PFE E +LVQS GMAQWL++ L++ FGIAANI Sbjct: 1 MFTLYHSNQLDLLKELLVNHIRQAPLAHPFEQEQVLVQSPGMAQWLKLELAKAFGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD--- 117 +FPLPASFIW+MF RVL ++P++S +NK +MSW+LMT+LP LL+R F L YL Sbjct: 61 EFPLPASFIWEMFTRVLADVPRQSPYNKGAMSWQLMTILPALLDRPAFAPLAAYLGGGDE 120 Query: 118 -----DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA-------QAWQ 165 D ++ +L+QL K ADLFDQYLVYRPDW+A+WE G + G Q WQ Sbjct: 121 QDPAGDPEQVRLWQLCQKVADLFDQYLVYRPDWIARWEEGEGLVGTESQDLAGVSGQDWQ 180 Query: 166 APLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 LW+ LV T L +HRANLY+ FI L+ P LP RVF+ GISALPP Y++ Sbjct: 181 PELWRELVARTLALSPSGYHRANLYEEFIHELQRTRDLPGKLPQRVFVFGISALPPRYVE 240 Query: 226 ALQALGKH--IEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENA 283 AL ALG +E+HL TNPCRYYWGD+ D LA+L + + + Sbjct: 241 ALLALGSRPEVEVHLFVTNPCRYYWGDLLDRKTLARLENKLKPGT--------------- 285 Query: 284 GQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDN------LLHN 337 + D Q NPLLAS GKLGRDY++ L +LE SQ ++AFVD+ + LL Sbjct: 286 ----DLDTLQGPANPLLASMGKLGRDYLHQLMELEVSQ-IEAFVDIDEVDASGNVRLLRA 340 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 IQ D+LEL +R +++ S +K P+DP D S+ H CH P RE+EVLHDRLLA+ Sbjct: 341 IQKDVLELGSRGEGQFDLDS---SYHKSPIDPADGSLQIHACHGPMRELEVLHDRLLALF 397 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 E DP+LTP+D++VM+ D++SY P+IQAVFG A +P+A+SDR A Q P+L++F++L Sbjct: 398 ERDPSLTPKDVVVMMPDVNSYGPYIQAVFG---ARGQIPFAVSDRAASQESPLLQSFLAL 454 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L LP +R + ++LA+L+VP + RF++ ++ LR WV E+GIRWG+DD ELP Sbjct: 455 LHLPSARLGAGELLAILEVPAVLRRFELDDDEFNQLRVWVQETGIRWGLDDAYPERFELP 514 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQ----------------GEWQSVLPYDESSGLIAELV 561 ++W FGL RMLLG+AM + G S+LPY E G + Sbjct: 515 RMSGNSWLFGLRRMLLGFAMGDGEPVAGMSFCADHGAGQQGAVASILPYAEIEGQQGLAL 574 Query: 562 GHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 G LA + L + L +E+ L EW D+L+ F+L D E E + LI Q Sbjct: 575 GKLAWFVDSLAEFLPRLQREQSLPEWSACLLDLLDRFYLADEEEERLLQLIRSQLADWQT 634 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMN 681 + A++ + LL+D L + L + R SQRFLAG VN CTLMPMRSIPFK VCLLGMN Sbjct: 635 QLGEARFDQPITADLLQDYLGKVLGESRSSQRFLAGQVNFCTLMPMRSIPFKQVCLLGMN 694 Query: 682 DGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSE 741 DGVYPR LAP+GFDLM+ +RGDRSRRDDDRYLFLEAL+SAQQ LYISY G S QDNS+ Sbjct: 695 DGVYPRTLAPMGFDLMAVASRRGDRSRRDDDRYLFLEALLSAQQGLYISYQGFSAQDNSD 754 Query: 742 RFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP---GE 798 + PSVL+ ELIDY+ Q L GDE L+ + S R+ HL H P+ + P Sbjct: 755 KVPSVLLAELIDYVRQGFVLAGDERLDDEASGERLLKHLVVEHPLTPYSRSYFYPEAESR 814 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTL----PETVPLETLQRFWAHPVRAFFQMRLQ 854 +YA +WLPA + A + LP + + L L RF+ P + F RL+ Sbjct: 815 LFTYAADWLPALNPVRGAANFQSGELPLPPEWGREQGLELAELLRFYRQPAKYFLNRRLK 874 Query: 855 VNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE 914 V F ++ I D+EPF L+GL YQ+ LL++ + + D+ R + G LP G FG Sbjct: 875 VWFELNEANIEDSEPFELDGLQHYQLKALLLDSHLAEGDSAVRRERLQLTGLLPQGWFGS 934 Query: 915 IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSV 974 + + EM +LA+R+ Q++EID++ Q+ GW+ Q LL +P + Sbjct: 935 LLLDDLDAEMGKLAERLRPWVSEKQAVEIDISLAQGQLQGWIDT-QKGRLLVVKPGSFNG 993 Query: 975 AQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAP 1034 + W++HL S G++ LF K R P L+A++A L+ L+ + +GM P Sbjct: 994 KDLLLGWIQHLCLSLSCAPGDTLLFDAK-QSLRLPKLSADEARPKLAALVALWAQGMKRP 1052 Query: 1035 LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 L P + WLK M + A L + G MV GEG D++ R + Sbjct: 1053 LPFFPNTAWDWLKA--------MEKEPDKPDAADKAALTRFNGGWMVTGEGQDVYVARCF 1104 Query: 1095 RQLTPETMEAIVEQSQRFLLPLFR 1118 +L + + ++ L PL + Sbjct: 1105 PELDEAVLSQLQALAREHLPPLLK 1128 >UniRef50_Q1LST9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LST9_BAUCH Length = 1098 Score = 1114 bits (2882), Expect = 0.0, Method: Composition-based stats. Identities = 499/1132 (44%), Positives = 715/1132 (63%), Gaps = 51/1132 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SN+LDV+ +++ ++ +L + +PE+ILVQ+ + QWLQ+ L+ GIAANI Sbjct: 1 MFTIYQSNKLDVITSILISLISERKLRETLQPEIILVQNHNITQWLQVELAMSLGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F P FI+ + +LPE+ E F++ +SWK+ +LP ++ + +L+R YL +D D Sbjct: 61 RFSTPTIFIYKLLSSILPEMNLEMFFSRSLISWKIRLILPHFYDQPNCSLIRQYLHNDVD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 KRK F LS K ADLF QY +YRPDWL W+ G V LG Q WQA LW+AL+E Sbjct: 121 KRKQFHLSEKIADLFYQYFLYRPDWLEIWQQGKRVASLGPDQNWQALLWRALIEEN---- 176 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 NLYQ FI+ ++ T P GLP R+FI +S+LPP+YLQ LQAL HI+IH + Sbjct: 177 ---MLSTNLYQLFIQAMKHMTVRPSGLPDRIFIYAVSSLPPIYLQVLQALSNHIDIHFML 233 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NP R+ R + S+ + + ++++ Q NPLL Sbjct: 234 VNPYRF---------------NRINKQSYTQQPI------------YSTNTNQKSINPLL 266 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 WGK G+D I LLS+L++ Q++DAFV+ L +S + L+ + + Sbjct: 267 EYWGKQGKDTISLLSELKNIQKIDAFVE------LSQEKSLLSLLQLDILEDNIVCHLHN 320 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + KR L D S++ +VCHSPQRE+EVLHD +LAM+ ++ +L P +IIVMV DI+ Y P Sbjct: 321 AKVKRLLQHNDHSLSINVCHSPQREIEVLHDAILAMIAQEQSLLPCEIIVMVTDINLYIP 380 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 I+AVFG+A DRYLP+ I DR + ++PVL F+ LL LP SR E+VL+LLD VLA Sbjct: 381 AIKAVFGNATTDRYLPFTIYDRTVKHTNPVLSVFLRLLKLPFSRLTIEEVLSLLDTSVLA 440 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 F I++ L LR+W+ ESGIRWG+DDD R+L LP T QHTW FGL RMLLGYA++S+ Sbjct: 441 KHFSISQIDLTILRKWIVESGIRWGLDDDTQRDLMLPTTSQHTWEFGLNRMLLGYAIDSS 500 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 G WQ +LPYDESSG AEL+G+LA L+M+L WR+ L + R L EWL DM+ FF+ Sbjct: 501 NGIWQGILPYDESSGKRAELIGNLAELIMRLRRWRKNLKKPRKLTEWLHCASDMIKDFFV 560 Query: 601 --PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 + E E A+ +I QWQ I+ G+ A Y V ++ L DEL RL Q+ ++Q F++ Sbjct: 561 TNVNKEVETALVIILDQWQQILQCGIKANYDQPVSIARLYDELNMRLQQKHLNQSFISSN 620 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 + CT+MP SIPFKV+CLLGMNDG+YP + PL FDLM Q+P+RGD +R D+DRY+FLE Sbjct: 621 IIFCTIMPTSSIPFKVICLLGMNDGIYPHSILPLNFDLMKQQPRRGDYNRYDEDRYIFLE 680 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 L+SAQQKLYIS+IG IQDN+ R PS+L+ EL +YI Q+ YL GDE L+ ++ Sbjct: 681 LLLSAQQKLYISFIGYFIQDNTLRSPSILISELTNYITQNFYLSGDEQLDEHTCNLHIRK 740 Query: 779 HLTCLHTRMPFDPQNYQPGE-RQSYAREWLPAASQAGKA----HSEFVQPLPFTLPET-- 831 HL H+RMPF P+N+ PG QS+A+EWL AA + ++ + F+ T + Sbjct: 741 HLWQWHSRMPFAPENFIPGSINQSFAKEWLLAAKASFRSNNTQNRFFMNKSLATKKQENM 800 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ 891 + L L++F+ HPVR +FQ RL + E +I + EPFI++G+S Y+I +++LNAL+E Sbjct: 801 LLLANLKKFYQHPVRTWFQQRLDLWLYNEPQDISENEPFIVKGISHYKIKEKILNALIEG 860 Query: 892 DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ-SMEIDLACNGV 950 + + ++++ RAAG L YGAFG+++W QC +M L D++ P Q + +I L + Sbjct: 861 KNLDVIYQQVRAAGLLAYGAFGKLYWTKQCSKMIYLVDQIRTYILPEQHTEKIQLNIDNT 920 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPP 1010 + GWL ++Q +GL+RW P LS+ G+QLW+EHL YCA GGNG+SR+F + +W FP Sbjct: 921 VLIGWLSKIQCNGLVRWYPHNLSMKHGLQLWIEHLAYCAIGGNGQSRMF-GTNSQWCFPV 979 Query: 1011 LAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTK 1070 L++++A YL LI+GY +GMS PLL+L SGGAWL C++ + + + + AR Sbjct: 980 LSSDEAKKYLLTLIKGYWQGMSEPLLLLNRSGGAWLTHCFNKKTRMINWEKDCQRTARNY 1039 Query: 1071 FLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 ++A+EGN + GE D++ Q+L QL + AI++ + + LP +FN S Sbjct: 1040 MIKAWEGNHLFPGESSDLYLQKLILQLNENYIIAIIKAVECYFLPPLKFNIS 1091 >UniRef50_A6W0B0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Marinomonas RepID=A6W0B0_MARMS Length = 1131 Score = 1091 bits (2822), Expect = 0.0, Method: Composition-based stats. Identities = 435/1153 (37%), Positives = 641/1153 (55%), Gaps = 61/1153 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M ++Y SNRL+ L L+ I+ ++PF+ E ILVQ+ GMAQWL+M L++ IAA + Sbjct: 1 MFQLYTSNRLEDLAVLLAKILAVSPPENPFDDEFILVQNPGMAQWLKMFLAESHSIAAGL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLP++F+W F + L +IP +S FNK + W+LM LL L +F L YL +D Sbjct: 61 VFPLPSTFVWQTFAQSLDDIPAQSEFNKPFLVWRLMRLLDSRLGDPEFQALSWYLEEDDT 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQAWQAPLWKALVEYT 176 + + FQL S AD++DQYLVYRPDW+ WE G + + E Q WQA LW+ LV Sbjct: 121 QIRRFQLCSSIADIYDQYLVYRPDWIKSWEGGEAQDPKLTAIFEQQPWQAILWRDLVADV 180 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL--GKHI 234 Q G +HR NL + + +S+ P G+P R+FI G+S+LPP L++L+ L I Sbjct: 181 SQRGTSLYHRGNLIEALHDKTQSSA-RPVGVPERIFIFGVSSLPPNTLESLRVLAASGWI 239 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++HL NPCR+YWGD+ D YL + + RQ ++D Sbjct: 240 DVHLFLQNPCRFYWGDVVDKHYLGREIKRQ-----------------TLKPGLSTDTLHL 282 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPD---NLLHNIQSDILELENRAVA 351 NPLLASWG+LGRDYI L ++ + EL F D + LL IQ D+L LEN Sbjct: 283 DANPLLASWGRLGRDYIAQLQEMADN-ELVVFEDYRTEQSTGLLQWIQQDVLTLENHGSQ 341 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 + + + P+ D SI H+CHSP REVEVLHD+LL M E DP+LTP+DIIVM Sbjct: 342 QERDAKIRDASYRHPIAADDQSIRVHLCHSPLREVEVLHDQLLQMFESDPSLTPKDIIVM 401 Query: 412 VADIDSYSPFIQAVFGS----APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 + D+++YSPF++AVFGS A +++P+A+ D+ +P+++A++ LL L +SRF Sbjct: 402 LPDVNTYSPFVKAVFGSVKGSAQGRKHIPFALIDQSGGMENPIVDAYLYLLGLGESRFTL 461 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 +++++L+VP + ARF++T + L +RQW E GIRWG+D ++ +LP HTW G Sbjct: 462 SELISVLEVPAVLARFELTADELERIRQWSTEVGIRWGLDGKTAQQHDLPMQESHTWLNG 521 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 + RMLLGYAM W+ L Y + GL A + G LA L+ +N + L + +EW Sbjct: 522 VRRMLLGYAM-GHDHIWEGTLSYGDVEGLEASVAGKLAEFLVAINDAQAKLMESLAPKEW 580 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 + + FFL D E +A L+ +Q A+ + A + + +LR L+ L + Sbjct: 581 ISTLYYLAERFFLVD-EDDAFPALLSKQLDALTLQWQQAHFDAPLDQQVLRQLLSPLLQE 639 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + QRFLAG VN CTLMPMRS+PFKV+C+LG+N+G YPR +AP+GFDLM + + GDRS Sbjct: 640 SQGGQRFLAGRVNFCTLMPMRSVPFKVICVLGLNEGDYPRSVAPMGFDLMVGQYRSGDRS 699 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 RR+DD+YLFLEAL+SA+ YISY+GRSIQDNSE+ PS+LV EL++YIGQS GD+AL Sbjct: 700 RREDDKYLFLEALMSARDCFYISYVGRSIQDNSEKNPSILVSELLEYIGQSCVFEGDQAL 759 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQPGE-------------RQSYAREWLPAAS--Q 812 D+++ + L H PF+ Y + SY +WLPA Sbjct: 760 TPDDAQKALLEKLILEHPLQPFNAAYYFQPQGSSHESTDQFDKRLYSYDEQWLPALLSVP 819 Query: 813 AGKAHSEFVQPLPFTLPE-TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI 871 + F P + L+ L RF HP R F Q RL+ ++ E + EPF Sbjct: 820 VDEEAQAFSPLEGLEQPRIDLALDELSRFIGHPTRYFTQRRLKAYLSLQEEEEKEDEPFA 879 Query: 872 LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV 931 L+GL+ YQ+ + LL A+++ D+ ++ R G LPYGA G + + + +QL + Sbjct: 880 LDGLAGYQLREGLLQAMLKGDE-DQFVERLSLMGALPYGALGRLSLQQSRGQCRQLLSVL 938 Query: 932 IAC-RQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS 990 + + +E++LA + + WL L +R LS Q MQ+W+EHL CA Sbjct: 939 QGYALEECEPIEVNLAMGSIVLQAWLDLPTATTRLSYRIGDLSAHQKMQMWIEHLALCAQ 998 Query: 991 GGNGESRLF-LRKDGEW---RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWL 1046 G E L L K G+ F + A YL+ ++ ++G+ P+ + +S AW Sbjct: 999 GTPKEHHLINLTKTGKLLQHSFIIIPPNDAQDYLNTMLALLQQGLCQPIALPAKSADAWC 1058 Query: 1047 KTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIV 1106 K+ ++ + D D ++A + + R E DD ++QR + L + + V Sbjct: 1059 KSYCSSKT--LEDADIAWEQALKLYQD--NSSAFTRSEVDDAYWQRYFPDLNRQKAQ-FV 1113 Query: 1107 EQSQRFLLPLFRF 1119 ++ LP+ R Sbjct: 1114 SLCEQIWLPMHRH 1126 >UniRef50_B8CMV5 Exodeoxyribonuclease V, RecC subunit n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CMV5_SHEPW Length = 1224 Score = 1082 bits (2799), Expect = 0.0, Method: Composition-based stats. Identities = 404/1223 (33%), Positives = 634/1223 (51%), Gaps = 131/1223 (10%) Query: 1 MLRVYHSNRLDVLEALME-FIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++ L ++ + PE ILVQS GM+ WL++ ++++ IAA Sbjct: 1 MLYLVQSNQMEALSQILATELTTPLPGAPLLLPEHILVQSPGMSTWLRLEIARQNNIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD- 118 ++FPLP+SFIW + +L ++PKE+AF K +++WKLM LLP L++++DF L +YL + Sbjct: 61 LEFPLPSSFIWQLCHTLLEDVPKENAFTKAAITWKLMELLPSLIDQDDFAPLANYLNNGN 120 Query: 119 --------------------------SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 KL+QL + AD+FDQYLVYRPDW+A WE Sbjct: 121 QGHGENDLQSQYLEIDTSETISASHPQSPLKLYQLCGQIADIFDQYLVYRPDWIAAWEAN 180 Query: 153 HLV-----EGLGEAQAWQAPLWKALVEYTH-QLGQPRWHRANLYQRFIETLESATTCPPG 206 + L AQAWQ LW+AL+++ L + ++HRANL+Q + L+ T Sbjct: 181 EPTLPPKGDKLAPAQAWQPILWRALIQFNANTLHKSQYHRANLHQALFDKLDDPNTSMTS 240 Query: 207 LPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRR 266 LP R+F+ GIS++ P L L L K I++ +L +PC++YWGDI DP A++ + Sbjct: 241 LPRRLFVFGISSMAPQTLDVLHHLAKRIDVIMLSLSPCQHYWGDIVDPRLRARMALQYAN 300 Query: 267 HSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---L 323 + E + + +VGNPLLA+ GK+GR+ + L+ +L L Sbjct: 301 KQKLEVE---------------WEDKLEVGNPLLANNGKMGRELLDLMLELPEEHTAFNL 345 Query: 324 DAFVDVTPDNLLHNIQSDILELENRAV-AGVNIEEFSRSDNKRPLDPLDSSITFHVCHSP 382 D + D D +LH +Q DIL+L R G + + D +R L D SIT CHSP Sbjct: 346 DCYQDPGIDCMLHGVQHDILQLSTRGQCLGPDASLYLTVDGRRMLQQDDHSITIRSCHSP 405 Query: 383 QREVEVLHDRLLAMLEEDPT-----LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPY 437 REVE LHD LL ML + L P+DI++M+ D+ +Y+P+I AVF + Y+PY Sbjct: 406 LREVETLHDHLLEMLSKQTDSKGQPLAPKDIVIMMPDVAAYAPYIDAVFSAKQGSHYIPY 465 Query: 438 AISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWV 497 AI+DR A Q P++ +F+ LL++ SRF D++ +L+VP + RF++ ++ L L++W+ Sbjct: 466 AIADRGAVQESPLIASFLHLLNINQSRFGLTDIIGILEVPSVLRRFELDDDSLTILKRWL 525 Query: 498 NESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLI 557 ++G+RWG D + E +LPA Q+ W G+ R++LGY+ +Q L + G Sbjct: 526 EQAGVRWGRDGASRAEHQLPAFEQNAWALGIKRLILGYSFADNSPLYQQTLAVNGIEGQT 585 Query: 558 AELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQ 617 A+ +G L + L+ LAQ L E + +L AF+ D + + + I Sbjct: 586 AQALGKLLDFIEALDDVHAALAQNCSLTERIEQLEQLLAAFYSVDDDEQVQLQEIRDAIV 645 Query: 618 AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCL 677 + E + + +P+ +L++ RL + R+ QR+LAG +N CTLMPMRSIPFK+VCL Sbjct: 646 TLAEELTESGHTTPLPIEVLQNWFNSRLSESRVGQRYLAGSINFCTLMPMRSIPFKIVCL 705 Query: 678 LGMNDGVYPRQLAPLGFDLMSQ-KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSI 736 LGMNDGVYPR P+GFDL++Q P++GDRSRR DDRYLFLEA++SA+Q+LYISYIG S Sbjct: 706 LGMNDGVYPRVQHPVGFDLVAQMDPRKGDRSRRLDDRYLFLEAILSARQQLYISYIGNSE 765 Query: 737 QDNSERFPSVLVQELIDYIGQSH---------------YLPGDEALNCDESEARVKAHLT 781 +D+SER PS+LV EL++Y ++ Y + A+ D+ E + L Sbjct: 766 RDDSERIPSMLVSELVEYCQLAYLPAKLALESKASADNYSKQEAAVFVDKIEQAISTQLI 825 Query: 782 CLHTRMPFDPQNYQPGE-------RQSYAREWLPAASQ------AGKAHSEFVQPLPFTL 828 C PFD + Y +QSY+ +W P A A K+ + F+ L Sbjct: 826 CKQPLQPFDERLYHSAHISDSFPLQQSYSAQWCPVAVSQTTTDIADKSSNRFINLDTCLL 885 Query: 829 P---------ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQ 879 E + L L RF+ +P + +F L+V+ + EPF L L RYQ Sbjct: 886 NTAQSDSEEVEEIELSALIRFFRNPAQYYFNRTLKVDLSINVRADDNDEPFSLNALERYQ 945 Query: 880 INQQLLNALVEQD---DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR- 935 + L+ +E L R +A G++P F ++ ++ L R + + Sbjct: 946 LQSILIEHAIENQTESPDGELLERLKAQGNIPLKPFDDLLLSQYLHDITPLIGRSLYLKG 1005 Query: 936 QPGQSMEIDLAC-----------NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEH 984 + QS+EI + +++ G + + GL+ +RP + ++++L H Sbjct: 1006 ESSQSIEIAIDIALVDGSKPVTDQSIKLVGRIDDLSAKGLVNYRPGTANGRDLIRVYLRH 1065 Query: 985 LVYCASGGNGE-SRL------FLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 L CA G+ + +RL +L G + F P+ A QA LS + +++G PL+ Sbjct: 1066 LCLCAMQGSTDITRLNQPINSYLLDIGHFHVFAPITAAQAKSQLSLWLTLFKQGQVQPLM 1125 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 +P + A+++ D L++A+ K+L GEG + +QRL+R Sbjct: 1126 FMPRTALAYVEA--------EGDHTQKLREAQPKWLDE----QSQLGEGMEPHFQRLYRF 1173 Query: 1097 LTPETMEAIVEQSQRFLLPLFRF 1119 + + + +Q L PL Sbjct: 1174 PEDFSEQHFGDTAQTLLSPLISL 1196 >UniRef50_Q2LTC9 Exodeoxyribonuclease V gamma chain n=2 Tax=Bacteria RepID=Q2LTC9_SYNAS Length = 1113 Score = 1074 bits (2778), Expect = 0.0, Method: Composition-based stats. Identities = 386/1142 (33%), Positives = 577/1142 (50%), Gaps = 69/1142 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + SNR++VL + ++ L P PE+I+VQS GM +W+ M L+ GI AN+ Sbjct: 4 LNIIASNRMEVLAEKLADVLAG-PLSSPLTPEIIVVQSRGMERWVSMQLAAFHGICANVR 62 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 FP P I D+F VLP E FN + +W++M+LL R F L YL DDS Sbjct: 63 FPFPRRMIQDIFHAVLPGWEAEQDFNPELAAWRIMSLLTVASSRPGFEPLAAYLHDDSQG 122 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 K FQLS + A LFDQYL++RP+ + WE G+ +WQA LW+ VE + Sbjct: 123 LKRFQLSRQIARLFDQYLIFRPEMILNWEKRISD---GDEYSWQADLWRLFVEEGKIV-- 177 Query: 182 PRWHRANLYQRFIE-TLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 H A L + + LP R+ I GIS LPP YL A+ +E++ Sbjct: 178 ---HPAVLRLSLQDVMIRRGNQLSACLPERISIFGISYLPPFYLDIFLAVSSFMEVNFFL 234 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NP R +W DI+ +++ + + +L S+ + GN LL Sbjct: 235 LNPSREFWFDIRSSREISREVKLVKGS---------VEKGMENEELSRSELYLEEGNSLL 285 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS G LGR++ L + S +E + +V+ +LLH IQSDIL L Sbjct: 286 ASLGTLGREFWSFLGEC-SGREEEYYVEPGETSLLHAIQSDILNLREGGGEA-------D 337 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 +D + + + S+ H CHSP REVEVLHD LL +LE DP+L P DI+VM +I++Y+P Sbjct: 338 ADGREVMFSEERSLQIHACHSPMREVEVLHDSLLDLLEADPSLQPHDIVVMTPEIETYAP 397 Query: 421 FIQAVFGSAPAD-------RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLAL 473 FI AVF + D +PY I DR PVL + +L LP RF + +VL+L Sbjct: 398 FITAVFETVDEDAPGLVDQPKIPYHIVDRATISGRPVLGGLLKILDLPLGRFAAGEVLSL 457 Query: 474 LDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLL 533 L+V + RF +TE + + +WV +SGIRWGID+ + LP ++W++GL RMLL Sbjct: 458 LEVAAIRNRFGLTEADIDQVSRWVADSGIRWGIDERSRLREGLPEIATNSWQWGLKRMLL 517 Query: 534 GYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 GYA+ + E + ++P + + G A L+G LA +L + L+Q+R L +W + Sbjct: 518 GYALPARNNELFSGIMPCETAEGSEARLLGILAEFTERLFLTAESLSQDRTLSDWGSLLD 577 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 D+ + FFL D ++E + + Q + + + + L+++R L R Sbjct: 578 DISDRFFLGDEDSEPDIRNLRQLASDLKNLQEKTGFPEKISLAIVRSFLQDRFQATGADG 637 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 FL+ V C+L+PMRSIPF+V+CL+GMN+G YPR+ FDLM++ P+RGDRSRR+DD Sbjct: 638 GFLSRGVTFCSLLPMRSIPFRVICLMGMNNGDYPRRPQTPSFDLMARHPRRGDRSRRNDD 697 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEAL+SA+ LYISY+G+S++DNS PSV+V EL+DY+ + L Sbjct: 698 RYLFLEALLSARDTLYISYVGQSMEDNSRIPPSVVVSELLDYVRRGFVLKDCN------- 750 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGE--RQSYAREWLPAA---------SQAGKAHSEFV 821 + L H F P + SY+ E AA + A +E + Sbjct: 751 ---IDELLITYHPLQAFSPVCFTEESCRLFSYSEENRKAANTLLKRSSLTSIPGAEAERL 807 Query: 822 QPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQIN 881 P + + L F+ HP R F Q RL V D + + E F +EGL RY I Sbjct: 808 PEDPAMATQA-TIRDLIAFFRHPARFFLQRRLAVFLGEADIVLEENEHFDVEGLDRYGIE 866 Query: 882 QQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD--RVIACRQPGQ 939 Q L+ +E E ++ A G LP+GA G+ ++ +++ + I + Sbjct: 867 QLLMEKEIETGHMEEVYPVLAAQGLLPHGAVGQSRFDALKRDICHFVRSYKHILHSENIP 926 Query: 940 SMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN---GES 996 +IDL G +++G L + GLL +R + L ++LW+ HL+ A+ G Sbjct: 927 PRDIDLEVAGFRLSGRLEGLGSRGLLHYRYATLKGKDHLKLWIMHLLLHATDGPDGGDRE 986 Query: 997 RLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 L L K+G WR+ + ++A +L +LI YREG+ PL PE+ A+ + Sbjct: 987 SLLLGKNGLWRYSAI--DEARCHLEKLISLYREGLCRPLHFFPETSWAYAVKILRNGELS 1044 Query: 1057 MLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPL 1116 ++S AR A+EG+ RGEG D + + + +P+ +E E S PL Sbjct: 1045 EEAEESAWDAARK----AWEGDDFQRGEGVDHYNRLCFGDFSPQDVE-FQELSLNVYRPL 1099 Query: 1117 FR 1118 Sbjct: 1100 LE 1101 >UniRef50_A1AQY6 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Desulfuromonadales RepID=A1AQY6_PELPD Length = 1061 Score = 1073 bits (2774), Expect = 0.0, Method: Composition-based stats. Identities = 368/1120 (32%), Positives = 545/1120 (48%), Gaps = 93/1120 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + SNR++ L + +++ L PF PE+++VQS GM +WL M L++ FG+ AN Sbjct: 3 LTICTSNRMENLVEALCDVLKT-PLSSPFTPEILVVQSKGMQRWLAMKLAETFGVWANCT 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 +P P +W++F++ PE+P S F+ + M+W++M LLP L R++FT L HYL D D Sbjct: 62 YPFPNKVVWELFMKAFPELPDTSRFSPEVMTWRIMGLLPAFLGRQEFTPLNHYLDGDGDG 121 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 K FQL+ K AD FDQY ++RP+ L WE G + WQ LW+ L Sbjct: 122 LKKFQLAGKIADTFDQYTLFRPNMLLDWEGGKGGD-------WQELLWRELA-----TAD 169 Query: 182 PRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 HR + Q FI+ L LP R+ + GIS LP +L + KH + L Sbjct: 170 NGQHRGRIKQDFIKLLAQGHAEKESLPERIMVFGISYLPSYHLDIFTEIAKHTTVSLFLL 229 Query: 242 NPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLA 301 +PCR YWGDI +++ +R + GNPLLA Sbjct: 230 SPCRQYWGDIVSAKQMSRRPPEER-------------------------AYLEEGNPLLA 264 Query: 302 SWGKLGRDYIYLLSDLES--SQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 S GKL RD+ ++ + S + ++D ++D LL IQSDIL L Sbjct: 265 SLGKLARDFSNMVVEAGSIATDDVDLYLDPGEGLLLEAIQSDILNLRGTEGG-------- 316 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 D+KR + P D S+ H CHSP RE+EVLHD LL +LE++ LTPRDIIVM DI++YS Sbjct: 317 --DSKRRISPQDRSVQIHACHSPMREIEVLHDNLLFLLEQEKGLTPRDIIVMTPDIETYS 374 Query: 420 PFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 P+I VFG + +P++I+DR + + + LL LP SR V +L Sbjct: 375 PYISMVFGGCQDPLKKIPFSIADRTLAKEGQIASVILKLLELPGSRLSVTRVFDILQSAP 434 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 ++ RFD+ + L +R W+ ++ IRWG D+ + L LP +++WR GL R++LGYAM Sbjct: 435 VSRRFDLDIQELETVRSWIEDTRIRWGADESHRSSLGLPHYRENSWRAGLDRLMLGYAMP 494 Query: 539 SA-QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 + +LPYDE G + +G LA + ++ R LA +R L EW ML+ Sbjct: 495 EEGDFLFHGILPYDEMEGDATQALGKLAEFVARIERLARDLAAKRTLTEWRDAITTMLSD 554 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F D + + I Q++ G A + + V L ++R LA RL +E FL G Sbjct: 555 FAAADDDLAHELASINGVVQSLEDLGAKAGFSETVDLVVIRSWLASRLGEEEKGLGFLTG 614 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 V C ++PMRSIPF+VVCL+GMND +PRQ P GFDL+++ P+ GDRS RD+DRYLFL Sbjct: 615 GVTFCAMLPMRSIPFRVVCLIGMNDAAFPRQSRPPGFDLIARNPQPGDRSLRDEDRYLFL 674 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 E L+SA+ Y+SY+G+S++DNS PSVLV E +D IG E ++ Sbjct: 675 ECLLSARTHFYLSYVGQSVKDNSAIPPSVLVSEFLDAIGAGF----------TSGEMTLE 724 Query: 778 AHLTCLHTRMPFDPQNYQP-GERQSYAREW----LPAASQAGKAHSEFVQPLPFTLPE-- 830 L H F + SY+ E L A ++G+ PL E Sbjct: 725 QRLVTSHRLQAFSRSYFDATSGLFSYSAENCAALLDATQRSGEPALFITHPLKAAPEEMR 784 Query: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 V L L RF+A+P + + RL++ + + D EPF +EGL Y INQ+LL ++ Sbjct: 785 EVTLAQLVRFYANPAKYLLENRLKIRLEEVSTPLDDREPFAVEGLEAYGINQELLEKRLQ 844 Query: 891 QDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSME---IDLAC 947 L+ R G LP GE + E+ L ++ +E Sbjct: 845 GGSVHGLYATTRCRGILPPAQHGETVFADALAEVDNLVKKIGERTGGQPRLEAFFFHETI 904 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR--LFLRKDGE 1005 +++G L + + + +R + L ++ W+EHL+ A G R L + KDG Sbjct: 905 GDFKLSGSLDGIWKERKISYRCAKLKAKDEIRGWIEHLLLNAFAPEGYPRESLVIMKDGS 964 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 F P+ E L L++ Y +G+ PL P S + + Sbjct: 965 TGFGPV--EHPTEQLGALLDCYWQGLHLPLRFFPASSLEFASSGLLKN------------ 1010 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAI 1105 + +E M GE D ++ + Q + Sbjct: 1011 -----ARKKWESGYMHTGEEADPHFRLCFEQDADPLNKEF 1045 >UniRef50_Q9CM76 RecC n=1 Tax=Pasteurella multocida RepID=Q9CM76_PASMU Length = 1124 Score = 1071 bits (2771), Expect = 0.0, Method: Composition-based stats. Identities = 436/1163 (37%), Positives = 649/1163 (55%), Gaps = 88/1163 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y+SN LDV + ++ +++ LDDPF+ ++ILVQS GMAQWLQ ++++ GI++NI Sbjct: 1 MFTIYYSNDLDVQKNILLTLMQDT-LDDPFQSDVILVQSPGMAQWLQWKIAEQQGISSNI 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD-- 118 FP+PASFIW +V LP ++S FNK SM+W+LM L+P+ LE+ +F LRHYL+ Sbjct: 60 KFPMPASFIWQQYVDNLPNTEEQSQFNKASMTWRLMRLIPEHLEQVEFQSLRHYLSSSHQ 119 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA--------------- 163 ++++KL+QL+ + ADLFDQYLVYRP+W+A WE G + + + Sbjct: 120 TEQQKLYQLAYQIADLFDQYLVYRPEWIACWERGDEATMMAQLERKLKDTRLPIGNAFSQ 179 Query: 164 ---WQAPLWKALVEYT--HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA 218 WQA LW+ALV HRA L +F++ L++ P LP R+FI GISA Sbjct: 180 DVKWQAILWRALVADILAESGQTVPLHRAYLQTQFLQFLQTQH--PVNLPPRLFIFGISA 237 Query: 219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFR 278 LP YL+ A+ ++ E+HL FTN CR YWGD+ DP ++ +L QR +P+F Sbjct: 238 LPKGYLEIFYAMSQYCEVHLFFTNGCREYWGDLIDPRFMQRLSQMQRTGYHTALPIPVFH 297 Query: 279 DSENAGQLFNSDGEQD-VGNPLLASWGKLGRDYIYLLSDLES---SQELDAFVDVTPDNL 334 ++NA + D E G+PLL+SWGKLGRD++YLL++LE + +DA+ ++T +L Sbjct: 298 HTDNARFESSYDHEHLFEGHPLLSSWGKLGRDFLYLLTELEQLEGVRSIDAYTELTSQHL 357 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 L +Q+ IL LE + L D S+TFH CHSP REVEVLHD LL Sbjct: 358 LSQVQARILHLEGKQGLN--------------LAENDRSLTFHSCHSPMREVEVLHDYLL 403 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPVLE 452 + ++D TLTP+DI+VMVADID Y+P+IQAVFG A R +P++ISD R ++ ++ Sbjct: 404 HLFQQDSTLTPKDIVVMVADIDKYTPYIQAVFGQYNQVAQRQIPFSISDNRLSENDVLIA 463 Query: 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVR 512 +FI LL+L +S+F +ED+LALLD+P + RF I L +R WV +GIR+G++ + + Sbjct: 464 SFIHLLALKESQFSAEDILALLDIPAIRNRFQIELMELEQIRHWVAHAGIRFGVEKEQGK 523 Query: 513 ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 + ++W+ GL RMLLGYAM G WQ L +D GL +L G LA + +L+ Sbjct: 524 Q----EKNTNSWQAGLERMLLGYAMREENGIWQGNLGFDPCYGLQGQLAGRLAEFIARLS 579 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 W + L +P+E+W +L FF D + I++ ++ + + + Sbjct: 580 AWYQFLQTPQPIEKWQQHLLTLLTDFFAEDETNITTLRYIQETIVQMVTDIQQTHFDQPL 639 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 ++ D L+ L+ + S +FLAG VN CTL+PMRSIPFKVVCLLGMN+G YPRQ P Sbjct: 640 SSEVVSDVLSALLEDDPNSMKFLAGKVNFCTLLPMRSIPFKVVCLLGMNEGDYPRQQTPN 699 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FDLM ++ DR RRDDD YLFLEAL+SAQ+ Y+S++GRSI DN + PSVLV +LI Sbjct: 700 SFDLMQYDRRKADRFRRDDDCYLFLEALLSAQEAFYVSFVGRSIVDNQSKPPSVLVSQLI 759 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ 812 DY+ + +A L H F P N++ GE S+A +WLP A+ Sbjct: 760 DYLVDKLSSAETQ---------DWQARLIEQHPMTAFSPDNFR-GENGSFANQWLPLANI 809 Query: 813 AGKAHSEFVQPLP---FTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 + ++FVQP+ + L L F HPV FF+ L V+F ++ I D+E Sbjct: 810 QKQERADFVQPIAQTVLAEDREIVLADLIAFIQHPVAFFFKRHLGVSFAKQEERIEDSEN 869 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L+GL RYQIN+QLL +++ + + + + G LP G F +IF Q +++ L Sbjct: 870 FTLDGLMRYQINEQLL--YCDEEKSAEVLAQLKVKGMLPRGEFAQIFALQQQEDIAALKT 927 Query: 930 RVI-ACRQPGQSMEIDLAC----NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEH 984 V +Q +E+DL +++ G L Q+ + WR + ++ W+ + Sbjct: 928 TVADYLKQEAHVVEVDLTIPSGYGDIRLIGLLDQLYAQRRVMWRVGQIQEKHLIENWVYY 987 Query: 985 LVYCASGGNGESRLFLRKDGEWRFPPLAAEQ-------ALHYLSQLIEGYREGMSAPLLV 1037 L+ CA E ++ K+G+ F L A + AL L +E Y +G +V Sbjct: 988 LIQCAMLAQHEPPIYYGKNGQATFQALCASESLSVKEIALAQLQIYVESYLQGYQQMQMV 1047 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ- 1096 ++ +L+ + + RT EG+ G DI++QR+ Q Sbjct: 1048 PMKNIQRYLEAYG-------HTETPDFEMIRTLLHHLAEGDYASDG---DIYWQRVLAQQ 1097 Query: 1097 -LTPETMEAIVEQSQRFLLPLFR 1118 L E + AI E++ + +F Sbjct: 1098 VLDEERLNAIGERTTSWFKLMFE 1120 >UniRef50_Q3IJ13 Exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=3 Tax=Alteromonadales RepID=Q3IJ13_PSEHT Length = 1099 Score = 1063 bits (2748), Expect = 0.0, Method: Composition-based stats. Identities = 395/1134 (34%), Positives = 610/1134 (53%), Gaps = 55/1134 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML + SNR++ L+A +++ L PF+ E++LVQS GM+QWL++ LS+ G+AA + Sbjct: 1 MLNIIQSNRMEALQAQFHQLLKTNPLASPFDKEVVLVQSPGMSQWLKIGLSENLGVAAQV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLP+SFIW ++ ++LP +PKESAFNK +++WKL +LP ++ + L+ YL D D Sbjct: 61 DFPLPSSFIWQLYQQLLPNVPKESAFNKPNLAWKLFAILPSCIDEPLYLPLKTYLEGDID 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETG--HLVEGLGEAQAWQAPLWKALVEYTHQ 178 +K F L K AD++DQYL+YRP W+A W++G L + WQ LW+ +V+ + + Sbjct: 121 GQKTFALCEKIADVYDQYLMYRPHWIATWDSGIDELDDVDVTIAPWQPDLWRRIVQLSLE 180 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 LGQ ++HRAN+ + + LE+ LP R+ + GISA+ L+ AL + E+ L Sbjct: 181 LGQSQFHRANMQGQLLAALETMDNSL--LPQRISLFGISAIASSQLEVFTALSEKTEVFL 238 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 F NP +YWGDI D AK+ + + +++ Q + +GNP Sbjct: 239 FFFNPSEHYWGDIIDEKTAAKISAKYAKMP--------LVEAQQKKQTNPDEEYYFIGNP 290 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGV-NIEE 357 LL+SWGKLGRDY L L+ ++ +D F+DV D LL IQS+I +L + + N E Sbjct: 291 LLSSWGKLGRDYFEQLVQLD-ARWIDGFIDVFDDTLLGQIQSEIYQLAFKGESLTDNKEW 349 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 F + K P+ D+SIT CH+P REVE LHD LL + ++P LTP+DIIVM+ D+ + Sbjct: 350 FINDEGKLPISATDTSITLSDCHTPLREVERLHDYLLNLFNQNPALTPKDIIVMMPDVGT 409 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 YSP+I+AVFG A R++PYA++D Q +PVL +F SL +LP SRF D+L LL V Sbjct: 410 YSPYIEAVFGGAQGSRFIPYALADLAIEQENPVLSSFASLANLPFSRFGVSDILDLLQVT 469 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 +A +F + ++ W+ G++WGI+ D+ +LPA +TW+ GL R+LLG AM Sbjct: 470 QIAEKFGLEAHEYEQIQYWLERVGVKWGINADHKSSFDLPAIDLNTWQHGLNRLLLGIAM 529 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Q + + DE G+ + + L + L ++ L + L V ++L+A Sbjct: 530 RDEQCPFNGIYSADEVEGMALDTLNKLVHFIDVLQSFKEQLTPDDTLTNKAHVLSELLSA 589 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 + +++ + +++ + + Y AV ++ + Q + ++ + QRFL G Sbjct: 590 IYESESDDSWDLLVLQNVLEELQKHHNNGDYSKAVSQRIVSYLIKQGIQEKGVGQRFLVG 649 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRYLF 716 VN CTLMPMR++PFKVVC+LG+ND YPR + P+GFDL+ K ++GDRSR+ DDRYLF Sbjct: 650 QVNFCTLMPMRAVPFKVVCMLGLNDADYPRNVQPIGFDLVPYSKKQKGDRSRKLDDRYLF 709 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 LEAL+SA+ LY+SYIGRS DN R PS LV EL++YIG+S L D+SE + Sbjct: 710 LEALLSARDNLYMSYIGRSCFDNQPRMPSTLVSELLEYIGRSFAL-------SDDSEKTL 762 Query: 777 KAHLTCLHTRMPFDPQNYQPGER-------QSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 L PF+ Y E+ SY WLP+ S + V L T P Sbjct: 763 PECLISQQHLQPFNSHYYLANEQANTVLSNHSYNPIWLPSESITPQ----VVSALNATPP 818 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 E + L+ R + +F+Q L + + + D EPF L+ L RY ++L A + Sbjct: 819 EQLELDVFIRSVCNAQESFYQQSLGLRLPQFNEVVKDEEPFSLDALRRYFYLDEILEANI 878 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSMEIDLAC 947 + + G+LP G + +E+ + LA +V + G +E+ L Sbjct: 879 NELPLS--TEQILQRGELPQANVGSLIFESMQHRVDALAGQVKEQIKGGKSDPIEVALEL 936 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWR 1007 +I GWL + + +R + + ++ ++ HLV + E+ L L D + Sbjct: 937 ENTKIEGWLNHIYLQKQVFYRSASIKAKDLIKGFIYHLVAQSMEQQVET-LILGLDKQVT 995 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 F P++ A L E Y+ + P+ P SG ++K+ D + KA Sbjct: 996 FAPISKTDADALLVDWFELYKALRNEPVAFFPVSGYEYVKSGGD------------IAKA 1043 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 +KF Y G RGEG++ + RL Q + + ++ S + L PLF + Sbjct: 1044 MSKFSPQYIG----RGEGENPYI-RLTVQSLNDCQDEFIQWSDKLLAPLFAHAK 1092 >UniRef50_Q65UM5 RecC protein n=9 Tax=Gammaproteobacteria RepID=Q65UM5_MANSM Length = 1167 Score = 1059 bits (2739), Expect = 0.0, Method: Composition-based stats. Identities = 438/1173 (37%), Positives = 654/1173 (55%), Gaps = 92/1173 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 VYHSNRLDV + ++ +++ DDPF+ E+ILVQS GMAQWLQ+ +++K GIAAN+ Sbjct: 22 FTVYHSNRLDVQKDILIELMQLLPPDDPFQTEIILVQSPGMAQWLQLKIAEKKGIAANLK 81 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD--S 119 FP+PASFIW ++ VL ++ +++ FNK +M+W+LM L+PQ L F L +YL + S Sbjct: 82 FPMPASFIWQQYINVLEDVSQQTQFNKDAMTWRLMQLIPQFLSEPCFQALENYLKNSPYS 141 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG------------------HLVEGLGEA 161 +++KL+QL+ K ADLFDQYLVYRP+W+ WE L+ + Sbjct: 142 EQQKLYQLARKVADLFDQYLVYRPNWIHAWENNQPESIEQAIGTYQKDDNPELITQIKRD 201 Query: 162 QAWQAPLWKALVEYT-HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 WQ LW+AL++ G HRANL+Q FI+ L SA P LP R+FI GISALP Sbjct: 202 IKWQGILWRALIDEVQRGAGYKVRHRANLHQAFIDKLRSAK--PENLPQRIFIFGISALP 259 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 YL+ +A+ ++ +IHL F NP R YWGDI D +L KL TRQR +E+ L + Sbjct: 260 QSYLETFEAMSRYCDIHLFFNNPSREYWGDIVDDRFLQKLQTRQRFDHYENNHTALLSSA 319 Query: 281 ------ENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDL-----ESSQELDAFVDV 329 + + + + VGNPLLA WGKLGRD+ YLL+DL E ++E+ AFVD+ Sbjct: 320 TLTNMQQENYEFSPDNEKLLVGNPLLAGWGKLGRDFFYLLTDLMTRAEEHNREIIAFVDL 379 Query: 330 TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVL 389 LL +Q IL+L AV +N + D+S+T H CHS REVEVL Sbjct: 380 DDKTLLSQVQGHILDLIPMAVKKLNKPQ------------EDNSLTIHACHSVMREVEVL 427 Query: 390 HDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD-----------RYLPYA 438 HD LL++ E D LTP+DI+VMVADID Y+P+IQAVFG D RY+P++ Sbjct: 428 HDYLLSLFELDKNLTPKDIVVMVADIDKYAPYIQAVFGQYQKDLQTNQFYQADKRYIPFS 487 Query: 439 ISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVN 498 ISD + +S ++ +F+ LL+L +S+F +E+VLA LD+P + RF I E L +R+WV Sbjct: 488 ISDNKLTESDVLIASFLMLLNLKESQFSAEEVLAYLDIPAIRMRFQIELEDLETIREWVK 547 Query: 499 ESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIA 558 SGIR+G++ L + W+ GL RMLLGYAM + G WQ L +D+S GL Sbjct: 548 NSGIRFGLEKRTDNSL----KNYNAWQSGLERMLLGYAMRAENGIWQDSLGFDDSHGLQG 603 Query: 559 ELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQA 618 +L G LA+ + +L W++ L EEW ++++ FFL + ++ A+ +++ Q Sbjct: 604 KLAGLLAAFIERLYQWQQFLRNPHSYEEWGQALLELVDHFFLENEQSLEAILYLKEIIQQ 663 Query: 619 IIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLL 678 + + + + + ++ + +A++L+ + S +FL G V+ CTL+PMR+IPFK VCLL Sbjct: 664 LHEQLDEVNFTSKLEIDVIAEVMAEQLNDKNTSLKFLVGKVSFCTLLPMRAIPFKAVCLL 723 Query: 679 GMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQD 738 GMNDG YPRQ P FDLM ++GDR RRDDDRYLFLEAL++A+ Y+SY+G+SI D Sbjct: 724 GMNDGEYPRQQTPNSFDLMQYHRQKGDRFRRDDDRYLFLEALLAAENYFYVSYVGQSIID 783 Query: 739 NSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE 798 N +R PSVLV +L+DY+ ++ N DE +++ L H+ F P N+ Sbjct: 784 NQQREPSVLVSQLLDYLAENLA-------NNDEEIEQIRTSLVQYHSMTIFSPDNFSAMH 836 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTLPE--TVPLETLQRFWAHPVRAFFQMRLQVN 856 R SYA+EWLP ++ +F Q + + E + + L +F HPV+ FF+ RL V Sbjct: 837 R-SYAKEWLPLVNRNQYPVPDFTQQISGEIDEVREIDILQLVQFVQHPVKFFFEKRLGVY 895 Query: 857 FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIF 916 F+ D +IP+TE F L+ L + I +L+ D+ + F R + G LPYG FG+I+ Sbjct: 896 FQQTDEQIPETENFTLDNLDNFLIKDELIRFA--DDETDNYFERLKLEGILPYGHFGDIY 953 Query: 917 WETQCQEMQQLADRVIAC---RQPGQSMEIDLACNG--VQITGWLPQVQP--DGLLRWRP 969 E +L +++ A Q +EI L V +TG L + ++WR Sbjct: 954 KRRLQNEAAELKNKISAYLSQEPAHQFVEITLDMGEQSVLLTGHLDHLYQPFAQRVKWRV 1013 Query: 970 SLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYRE 1029 + ++ WL +L+ + N L+ K+G F L AL L ++ Y + Sbjct: 1014 GEVKDKHIIENWLYYLLQLCTTDNVNPPLYYGKNGCIGFKTLEKSTALSILKLYVKAYLQ 1073 Query: 1030 GMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIW 1089 G+ +V +LK+C Q + D S R ++ + E +DI+ Sbjct: 1074 GLKQVQIVPTYKIDDYLKSC---QPETEFDTLSAFNNLR----DLFKSSNNYTNEKEDIY 1126 Query: 1090 YQRLWRQLTPETMEA-----IVEQSQRFLLPLF 1117 + R+++Q T + I + ++ + + Sbjct: 1127 WTRVFQQATELNSDKEKLMQIQQTTRDWFGLML 1159 >UniRef50_A3QEU7 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Shewanella RepID=A3QEU7_SHELP Length = 1192 Score = 1057 bits (2734), Expect = 0.0, Method: Composition-based stats. Identities = 404/1203 (33%), Positives = 618/1203 (51%), Gaps = 111/1203 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERE-RLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SNR++ L L+ ++ P E ILVQS GM+ WL++ ++++ +AA Sbjct: 1 MLYLVQSNRMEALAELLANELQTPLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQVAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 ++FPLP+SFIW + ++LP++PKE+AF K +M+WKLM LLP LL +E F L +YL DD+ Sbjct: 61 LEFPLPSSFIWQLCHQLLPDVPKENAFTKPAMTWKLMELLPGLLSQEVFAPLANYLKDDA 120 Query: 120 --------DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-----VEGLGEAQAWQA 166 KLFQL S+ AD+FDQYLVYRPDW+ WE G L Q WQ+ Sbjct: 121 ILTDSAAPHSLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKERPLDANQQWQS 180 Query: 167 PLWKALVEYTH-QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 LW+ L+ Y H L Q R+HRANL+Q + L LP R+F+ GIS++ P L+ Sbjct: 181 LLWRELIHYNHHTLNQSRYHRANLHQALFDALSDPLCDLSKLPPRLFVFGISSMAPQTLE 240 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 L L K I++ +L +PC++YWGDI DP A++ + + Sbjct: 241 VLYFLAKRIDVVMLNLSPCQHYWGDIVDPKLRARMALQY---------------GDKQQL 285 Query: 286 LFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDI 342 + + + +VGNPLLA+ GK+GR+ + L+ +L + + + D ++LLH +Q DI Sbjct: 286 AIDWESKLEVGNPLLANNGKMGRELLDLILELPENDTNFNFECYQDPGSNSLLHGVQQDI 345 Query: 343 LELENRAVA-GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 LEL R G + E + + +R L D S+T CHSP RE+E LHD LL L + Sbjct: 346 LELCTRGETLGPDAELYLTTKGRRVLKIDDDSLTLRSCHSPLRELETLHDHLLEQLSQSD 405 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 L P+DI+VM+ D+ +Y+P+I AVF S D ++PYAI+DR A Q P++ +F+ LL L Sbjct: 406 GLAPKDIVVMMPDVAAYAPYIDAVFASKRGDHFIPYAIADRGAAQESPLINSFLHLLGLN 465 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 SRF D+L +L+VP + RFD+ ++ L +R+W+ ++G+RWG D + + +LPA Sbjct: 466 KSRFALTDILGILEVPAVMRRFDLDDDDLLLIRRWLEQAGVRWGRDQHSRQAQQLPAFEH 525 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 ++W FG+ R++LGY+ + L G A+ +G L + + ++ + L + Sbjct: 526 NSWAFGIKRLILGYSFSDEAPIYHDSLALPGVEGQSAQALGKLLNFIEAIDEFNLALGEH 585 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 PL + + ++ F+ E + + Q + E QY + L ++++ Sbjct: 586 CPLSVRITQLQTLVETFYDCVDEELSQKQELLQAITRLSEELTATQYQSELELEVMQNWF 645 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK- 700 + L + R+ QR+LAG VN CTLMPMRSIPF +VCLLGMNDGVYPR P+GFDL++Q+ Sbjct: 646 TRHLTESRVGQRYLAGSVNFCTLMPMRSIPFMLVCLLGMNDGVYPRVQHPVGFDLVAQEG 705 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 P++GDRSRR DDRYLFLEAL+SA+++LYISYIG S +DNSER PS+LV ELI+Y + Sbjct: 706 PRKGDRSRRLDDRYLFLEALLSAREQLYISYIGHSERDNSERIPSMLVSELIEYCQLCYL 765 Query: 761 LPGDEAL------------NCDESEARVKAHLTCLHTRMPFDPQNYQPGE---------- 798 L + + E + L PFD + Y E Sbjct: 766 PENCAHLLKGSNADDTSTADIAKIELAILDQLIITMPLQPFDERLYLADESEGAECEGAK 825 Query: 799 ------RQSYAREWLPAA-------------SQAGKAHSEFVQPLPFTLP----ETVPLE 835 RQSY+ +W P A ++ A PL E + L Sbjct: 826 SEPRRLRQSYSEQWCPRALTEQDKQHDGEQGAKPASAGHFIEAPLSLVADEDKGEPLELS 885 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV---EQD 892 L RF+ +P + FF L+++ + EPF L LSRYQ+ L+ V ++ Sbjct: 886 ALIRFYRNPAQYFFNRTLKLDLNLSIQADENDEPFALNPLSRYQLQSTLIEDAVKSGDER 945 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-GQSMEIDLACNG-- 949 + L R R +G LP F ++ + +++ L R + + + +IDL + Sbjct: 946 PSSELLERLRLSGQLPLAPFDDLLLKQYQHDIRALVGRTLYLQGESSHTQDIDLLLSDSA 1005 Query: 950 -VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS-----------GGNGESR 997 + G + V GL+ +RP + ++++L HL AS + Sbjct: 1006 ATALVGRIDGVSAKGLVNYRPGTANARDLIRVYLRHLCLNASVSDNSDVERHEATPWQRH 1065 Query: 998 LFLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 +L G + F P+ EQAL+ LS E Y +G S PL +P + A+++ Sbjct: 1066 SYLLDIGHFHAFAPITPEQALNQLSLWAEHYHQGQSQPLPFMPRTAFAYVEA-------- 1117 Query: 1057 MLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPL 1116 + L A+ ++L GEG + YQRL+ + + L P+ Sbjct: 1118 EGEHIEKLIAAQPQWLDE----QSNLGEGQEAHYQRLFTFPDDFSEAGFGTIASTLLSPM 1173 Query: 1117 FRF 1119 Sbjct: 1174 LSL 1176 >UniRef50_Q15V11 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V11_PSEA6 Length = 1166 Score = 1056 bits (2730), Expect = 0.0, Method: Composition-based stats. Identities = 408/1192 (34%), Positives = 601/1192 (50%), Gaps = 108/1192 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERER--LDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 ML + SN+++ L A + + + LDD F P+++LVQS GMAQWL++ ++Q GI+A Sbjct: 1 MLHLVQSNKMESLAAYLIGWLGESKSSLDDIFSPDVVLVQSPGMAQWLKIEIAQALGISA 60 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 NIDFPLP+S+IW ++ + ++P++SAF K +M+WKLM++LP++ +R +F + YL DD Sbjct: 61 NIDFPLPSSYIWQLYKGHVNDLPEQSAFTKDNMTWKLMSILPEMSDRTEFASIAQYL-DD 119 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL--VEGLGEAQAWQAPLWKALVEYT 176 KL+QL K AD++DQYLVYRP+W+ WE G + AQ WQ LW+ALVEY Sbjct: 120 QQPLKLYQLCQKIADIYDQYLVYRPEWILAWEQGENNVADTDVSAQPWQPILWRALVEYA 179 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 +L + +HRANL+ R + LE + L +F+ G+SA+P L+ AL K ++ Sbjct: 180 KELDESPYHRANLHTRLMAELEDTKSSKDELKP-LFVFGLSAMPVQQLEIFSALAKSRDV 238 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 + + NP +YWGDI D + + + L + L D VG Sbjct: 239 IIFWFNPSAHYWGDIVDNKQVLQAKLQ---------SLLAQASEDAQSGLSGMDDYLLVG 289 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 NPLLASWGK GRDY ++ LE DAF++ P++LL ++Q ++L L +R Sbjct: 290 NPLLASWGKQGRDYQDMILGLEVELH-DAFIEQEPESLLEHMQHEVLALTHRGAIEPLPA 348 Query: 357 EFSRSDN----KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV 412 + ++ K PL D ++ H CHS RE+EVLHD+LL + + P L P D+IVM+ Sbjct: 349 QELLTNGEEYPKIPLAEDDMTLQVHACHSAVRELEVLHDQLLHLFADHPELHPGDVIVMM 408 Query: 413 ADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 D+ SY+P I VFG ++PYAISDR A+Q P+L +FI L+SL SR DVLA Sbjct: 409 PDVASYAPIIDGVFGGTDKALHIPYAISDRNAQQESPLLNSFIQLMSLHQSRIGLSDVLA 468 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 L +VP + +FDIT E L W+ ++G+RWG D + LP Q+TW FGL R+L Sbjct: 469 LCEVPAVQRKFDITPEEFDLLSVWLADAGVRWGWDGQDKTRWALPNEPQNTWLFGLQRLL 528 Query: 533 LGYAMESA---QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 GYAM + + PY+ G +G +L L + Sbjct: 529 AGYAMGGESMFDDAHEPIAPYEHIEGQHVVALGKFYLFSRELGNALAFCQSAASLHAKIK 588 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 ++ +LPD + + + + Q + + Q+ + + EL Q L + Sbjct: 589 GALSLIEQLYLPDDDDQTYVLQLRQSLEQMTVH--EHQFSGEIVHDVFLAELEQSLSSKG 646 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRSR 708 + QRFLAG VN CTLMPMRS+PFKVVCLLG+NDG YPRQ+ P+GFDLM K +RGDRSR Sbjct: 647 VGQRFLAGYVNFCTLMPMRSVPFKVVCLLGLNDGDYPRQVVPVGFDLMRIGKGRRGDRSR 706 Query: 709 RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN 768 R DDRYLFLEA++SA+++LY+S+ G S +DNS R PS+L+ EL++Y Q+ L GDE+L Sbjct: 707 RLDDRYLFLEAILSARKRLYLSFQGFSAKDNSPRSPSILLSELLEYTQQTFCLAGDESLE 766 Query: 769 CDESEARVKAHLTCLHTRMPFDPQNYQ-----------PGERQSYAREWLPAASQAGKAH 817 + H+ H PF+P + P S+ WL A Q Sbjct: 767 TKTCADNLAKHIYHEHALQPFNPVYFATKRDAHEEEPLPSAMASFQTPWLALAQQLTDGS 826 Query: 818 S------EFVQPLPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD 866 +F F+LPE V L+ L F+++P +AFF R Q D Sbjct: 827 VHSDKEVDFCPAPLFSLPELAQVTEVELDELLIFFSNPAKAFFSQRWQTRLTRVYDVQSD 886 Query: 867 TEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQ 926 EPF L+ LSRY +N++ + + R RA G LP G +I + ++ + Sbjct: 887 DEPFELDALSRYVLNERFVTTQQQ-----DWTTRLRAEGKLPTGNIADISLQPIRKQSRA 941 Query: 927 LADRVIACRQ------PGQSMEIDLAC-------------------------------NG 949 L D ++A P E++ Sbjct: 942 LIDALVALIGGPLDEVPPTRAEVNFELSYLLDISPVPASELNANTNSSTQNSVSATSTQR 1001 Query: 950 VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES----RLFLRKDGE 1005 +QITGW+ + L+ WRP + +QLWL L CA+G + + + Sbjct: 1002 IQITGWVDNLYGGNLVLWRPGKVKGNNVLQLWLTWLALCANGSVAKHQRAYYIGVEDKEP 1061 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 + + ++A L+ I +R G L P++ WL +A Sbjct: 1062 FSIGAVDKDEAKTQLAIFIRYWRLGQLQVLHFYPKTAYEWLSVGDEA------------- 1108 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 KA K A+ G+ +GEG++ +R+ L + A E S PLF Sbjct: 1109 KALMKAKNAFYGSYFAKGEGEEPHIRRVCPDLN-QHFCAFSEVSHALFDPLF 1159 >UniRef50_B8E565 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Shewanella RepID=B8E565_SHEB2 Length = 1274 Score = 1055 bits (2729), Expect = 0.0, Method: Composition-based stats. Identities = 408/1255 (32%), Positives = 631/1255 (50%), Gaps = 165/1255 (13%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML++ SN+++VL L ++ + E ILVQS GM+ WL++ ++++ GIAA Sbjct: 1 MLKLIQSNQMEVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 ++FPLP+SF W + +LP++PK++AF K +M+WKLM LLP++L+ + F LRHYL + Sbjct: 61 LEFPLPSSFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDAFGPLRHYLGNTL 120 Query: 120 DKR----------------------KLFQLSSKAADLFDQYLVYRPDWLAQWETGH---- 153 D R KL+QL + AD+FDQYLVYRPDW+ WE Sbjct: 121 DNRSTTNSADTSEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPES 180 Query: 154 LVEGLGEAQAWQAPLWKALVEYTH-QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVF 212 L + L E Q WQ LW+AL+ + +L Q +HRANL+ I L + T LP R+F Sbjct: 181 LTKPLNEDQRWQPILWRALIAFNRDELNQSHYHRANLHSDLIAALNNPDTSLAQLPQRLF 240 Query: 213 ICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDR 272 + GIS++ P L+ L L I++ +L +PC++YWGDI DP A++ + Sbjct: 241 VFGISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAE 300 Query: 273 ELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ---ELDAFVDV 329 + + +VGNPLLA+ GK+GR+ + +L +L + D + + Sbjct: 301 L---------------WEDKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEP 345 Query: 330 TPD--------NLLHNIQSDILELENR-AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCH 380 D ++LH +Q DILE++ V G + E + +N+R L D SI CH Sbjct: 346 CDDPNDPHSHASMLHGVQYDILEMQTLDRVLGPDAELYQNVENRRLLKRDDQSIRVKSCH 405 Query: 381 SPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAIS 440 SP REVE LHD LL +L LTP+DI+VM+ D+ +Y+P+I AVF + Y+PYAI+ Sbjct: 406 SPLREVETLHDHLLELLSNHADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIA 465 Query: 441 DRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNES 500 DR A Q P++ +F++LL + SRF D+L++L+VP + RF + ++ L+ +R+W++E+ Sbjct: 466 DRGAAQESPLINSFLNLLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEA 525 Query: 501 GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL 560 G+RWG D+ + + +PA Q++W FG+ R++LGYA+ +Q L G A+ Sbjct: 526 GVRWGRDEQSRLKQGVPAFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQA 585 Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII 620 +G L + + L+ + LA + L ++L+AF+ D + + I A+ Sbjct: 586 LGKLLNFIEVLDETAQILALPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALE 645 Query: 621 AEGLGAQ-------------------------YGDAVPLSLLRDELAQRLDQERISQRFL 655 E L A G ++ + +L+ QRL + R+ QR+L Sbjct: 646 QELLSAGKPLDTSPLAFSLDISPLAPLAQQSISGLSLSIEVLQQWFNQRLTESRVGQRYL 705 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP-KRGDRSRRDDDRY 714 AG VN CTLMPMRSIPFKVVCLLGMNDGVYPR P+GFDLM+ ++GDRSRR DDRY Sbjct: 706 AGSVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRY 765 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL--------PGDEA 766 LFLEAL+SA+++LYISYIGRS +DNSER S+LV ELI+Y + Sbjct: 766 LFLEALLSAREQLYISYIGRSERDNSERIASMLVSELIEYCQLCYLPETLLAQSQKASSP 825 Query: 767 LNCDESEARVKAHLTCLHTRMPFDPQNYQPGER----------------------QSYAR 804 ++ +++E + + PFDP+ YQ + QSY++ Sbjct: 826 IDPEDAEKALYNAIVSHQPLQPFDPKLYQAAVKSDDENSSNIDGSSISQHKSGIGQSYSQ 885 Query: 805 EWLPAASQAGKAHSEF----------------VQPLPFTLPET---------VPLETLQR 839 +W P + A H+ P P + V + L R Sbjct: 886 QWCPPNADAAGTHAGRFIGAQTRIMLEADEQDSMPDTEAQPASVREQQQSKQVDVSALIR 945 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE---R 896 F+ +P + FF L+V+ + EPF L L RY + QLL+ + Q E Sbjct: 946 FFRNPAQYFFNRTLKVDLSLNIQADDNDEPFSLNALERYMLQAQLLDDAIGQGLTEPDIE 1005 Query: 897 LFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLAC--------- 947 L +R +A+G LP F ++ +++ L R + + S D+ Sbjct: 1006 LIKRLKASGSLPMQPFDDLLLRQYQHDIKPLIGRTLFLKGEQTSSHADIKLVFDLPITAG 1065 Query: 948 --NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGE 1005 V + G + + P GL+ +RP ++L+L HL A G S L G Sbjct: 1066 KSQQVLLQGRIDDISPKGLVNYRPGSAHGRDVLRLYLRHLCLMAMGHTHASYLL--DMGH 1123 Query: 1006 WR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 + P+ AE+A L+ L+ + +G PL +P + A++ + D L Sbjct: 1124 FHAIAPITAERAHALLADLLVLFYQGQQYPLCFMPRTSLAYV--------SCEGEHDERL 1175 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 Q+A ++L GEG++ YQRL+ + ++ ++R P+ Sbjct: 1176 QQALPEWLDE----QSQLGEGNEPHYQRLFSFPRDFSEDSFGALAERIYRPMVSL 1226 >UniRef50_Q080D9 Exodeoxyribonuclease V, gamma subunit n=6 Tax=Shewanella RepID=Q080D9_SHEFN Length = 1270 Score = 1054 bits (2726), Expect = 0.0, Method: Composition-based stats. Identities = 398/1262 (31%), Positives = 625/1262 (49%), Gaps = 171/1262 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVE-RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++VL + ++ R E +LVQS GM+ WL++ +++ GIAA Sbjct: 1 MLTLIQSNQMEVLSEQLAKLLAIRLDNVSLLASEHVLVQSPGMSTWLRLEIAKHNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 + FPLP+SF W + +LP++PK++AF K +M+WKLM LLP LL+ DF+ L+ YL+ Sbjct: 61 LSFPLPSSFTWQLCHDLLPDVPKDNAFTKAAMTWKLMDLLPSLLDNPDFSPLKQYLSPQV 120 Query: 120 D---------------------------------------------KRKLFQLSSKAADL 134 D KLFQL + AD+ Sbjct: 121 DTTTDIAATDILDTDVDANTNTDIETETNIHTANSHAISQLNQSHDAIKLFQLCGRIADI 180 Query: 135 FDQYLVYRPDWLAQWETGHLVE------GLGEAQAWQAPLWKALVEYT-HQLGQPRWHRA 187 FDQYLVYRP+W+ WE + L E Q WQ LW+ L++Y H L +HRA Sbjct: 181 FDQYLVYRPEWILAWEQNQPLSSIDNRLALDENQQWQPILWRTLIDYNQHHLHASHYHRA 240 Query: 188 NLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYY 247 NL+ I TL + T LP+R+++ GIS++PP L L L I++ +L +PC++Y Sbjct: 241 NLHADLIATLANPDTDLSMLPARLYVFGISSMPPQTLDVLYHLASRIDLIMLSLSPCQHY 300 Query: 248 WGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLG 307 WGDI +P A++ + D++ + + +VGNP+LA+ G++G Sbjct: 301 WGDIIEPKTRARMALQYANKKQLDQD---------------WEDKLEVGNPILANNGQMG 345 Query: 308 RDYIYLLSDLESSQEL---DAFVDVTPDNLLHNIQSDILELENRAVA-GVNIEEFSRSDN 363 R+ + LL L D +V+ P+NLLH +Q DIL++E G N + Sbjct: 346 RELLDLLLSLPPEHTDFGYDCYVEPEPNNLLHGVQYDILQMETLGQPLGPNSSVYQDIHA 405 Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 +R L P D SIT CHS REVE LHD LL +L + L+P+DI++M+ D+ +Y+P+I Sbjct: 406 RRTLLPSDDSITLRSCHSALREVETLHDHLLELLSNNSDLSPKDIVIMMPDVAAYAPYID 465 Query: 424 AVFGSAP-----------ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 AVFG+A D Y+PYAI+DR A Q P++ +F+SLL++ SRF D++ Sbjct: 466 AVFGTANSQYFADKNPQKGDYYIPYAIADRGAAQESPLINSFLSLLNINQSRFGLTDIIG 525 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 +L+VP + RF + ++ L +R+W++++ +RWG + +L + Q++W FG+ R++ Sbjct: 526 ILEVPAILRRFQLDDDELSLIRRWLDDANVRWGRSEQTRSQLGVQPFTQNSWAFGIKRLI 585 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LGYA ++ L G ++ +G L + L ++ + A + E L + Sbjct: 586 LGYAFNDDADIYRETLMVQGIEGQSSQALGKLLNFLETIDTYFNLFANDYSTAERLEQLQ 645 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 +L + + + I + E A + V + +L+ QRL + R+ Q Sbjct: 646 QLLADCYDTTDDEREQIQAIRDALVTLDTELESAGHQGQVDIEVLKQWFNQRLTESRVGQ 705 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK-PKRGDRSRRDD 711 R+LAG VN CTLMPMRSIPFKVVCLLGMNDGVYPR P+GFDLM+ PK+GDRSRR D Sbjct: 706 RYLAGSVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHFGPKKGDRSRRLD 765 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD------- 764 DRYLFLEAL+SA+++LYISYIG S +DN+ER S+LV EL++Y S+ Sbjct: 766 DRYLFLEALLSAREQLYISYIGHSERDNAERIASMLVSELVEYCQLSYLPQSLQQQLEQQ 825 Query: 765 EALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE---------RQSYAREWLPAASQAG- 814 +N D+++ V A L PFD + ++ + S+ +W P + A Sbjct: 826 AEINLDDADKAVLAQLIQAQPLQPFDAKLFRETPLSAHSVNKLQHSFNAQWCPPPANATI 885 Query: 815 KAHSEFVQPLPFTLPE------------------TVPLETLQRFWAHPVRAFFQMRLQVN 856 H F Q LP + + + L L RF+ +P + FF L+V+ Sbjct: 886 NNHIFFEQALPLSAEQADEVFAHTHINSEGIKVVELELSALIRFYRNPAQFFFNRSLKVD 945 Query: 857 FRTEDSEIPDTEPFILEGLSRYQINQQLL-NALVEQDDAER--LFRRFRAAGDLPYGAFG 913 + + EPF L L RY + ++L NA+ Q D+ L + + +G+LP F Sbjct: 946 LSLDIQADDNDEPFSLNALERYLLQSRMLDNAIEHQLDSPDFELLSKLKTSGELPMAPFD 1005 Query: 914 EIFWETQCQEMQQLADRV--IACRQPGQSMEIDLACN----------------------- 948 ++ +++ L +RV + +Q ++ +DL + Sbjct: 1006 DLLINQYLRDISPLINRVQFLQDQQAMHTLNVDLNFDLPMQDFPAYALSVQGLPEQADTT 1065 Query: 949 -----GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRL----- 998 V + G + + P GL+ +RP ++++L HL A + S + Sbjct: 1066 HSSIVRVNLVGRIDDILPKGLVNYRPGTAHGRDFIRVYLRHLCINAMANSSTSGMGKNQF 1125 Query: 999 -FLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 +L G + F P+ AEQA L + I G+ +G + PL +P++ A+++T Sbjct: 1126 SYLLDIGHFHAFAPITAEQAQAQLMRFISGFIQGQTQPLCFMPKTAFAYVET-------- 1177 Query: 1057 MLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPL 1116 D ++ K Q ++ GEG D QRL+ + + L P+ Sbjct: 1178 ----DGDHEEKLLKAQQKWDDGQNQFGEGHDPHNQRLFHFPEDFSEARFGALAIHLLQPM 1233 Query: 1117 FR 1118 Sbjct: 1234 LS 1235 >UniRef50_Q3ASJ4 DNA helicase/exodeoxyribonuclease V, gamma subunit n=8 Tax=Chlorobiaceae RepID=Q3ASJ4_CHLCH Length = 1127 Score = 1048 bits (2709), Expect = 0.0, Method: Composition-based stats. Identities = 389/1141 (34%), Positives = 588/1141 (51%), Gaps = 82/1141 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L +Y SNR+++L + +V R+ L FE E+I+VQS GM +WL M L+ +FG+ AN Sbjct: 33 LHLYTSNRMEMLVDSLAEVV-RQPLASVFEHEVIVVQSRGMQRWLSMELAGRFGVWANGR 91 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 +P P + + ++F ++LP + + AF K+ MSW++M LLP LLE +F LR Y DDSD Sbjct: 92 YPFPNAMVQELFKQLLPSVAQSDAFKKEVMSWRVMRLLPHLLEMAEFLPLRRYAADDSDG 151 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 KLFQLS K AD FDQY ++RPD LA WE +AWQ LW+ALVE Sbjct: 152 LKLFQLSEKIADTFDQYTLFRPDMLALWE--AGGGVAEGGEAWQPLLWRALVEGAG---- 205 Query: 182 PRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 HR L + L +++ LP R+ + GIS LP +L+ A+ + E+HL Sbjct: 206 --LHRGQLRELLFRQLSRSSSKISELPERITLFGISYLPQFHLELFAAVARLTEVHLFLL 263 Query: 242 NPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLA 301 +P + YWGDI +A+L ++ E GNPLLA Sbjct: 264 SPTQEYWGDIVSRKAMARLSEAEQALRSE-------------------------GNPLLA 298 Query: 302 SWGKLGRDYIYLLSDL--ESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 S G++GRD+ ++ ++ E+ + + D D+LLH +Q DIL L+ Sbjct: 299 SLGRIGRDFSEMVLEMSDEALDSQEFYDDPPEDSLLHALQWDILHLQGAGEM-------- 350 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 + R L P D S+ H CH+P REVEVL+D +L +LE P ++ RDIIVM DI+SYS Sbjct: 351 -DETPRLLQPHDRSVQIHACHTPLREVEVLYDAILGLLEAHPHISLRDIIVMTPDIESYS 409 Query: 420 PFIQAVFGSAPADRY-------LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 P+I VFG+A LP++I+DRR + A + LL+L SR + + Sbjct: 410 PYIATVFGTAREAGKEGKGVVALPFSIADRRMMHEGEIASALLKLLALHGSRLTASMLFD 469 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 L P ++ F E LR +R W+ SGIRWG+D+++ RE LPA H+WR GL R+L Sbjct: 470 FLASPPVSRAFGFDAEALRLIRGWIEGSGIRWGMDEEDRRERNLPAYRDHSWRAGLERLL 529 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LGYAM + +Q VLPY + +G AE++G A + L + R LE W Sbjct: 530 LGYAMPEEEQLFQGVLPYGDIAGSAAEMLGRFAEAVEALERFVSSSEPSRTLEAWRQQYA 589 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 L FF PD ++E + + + G+ A + + + + L RL+++ Sbjct: 590 MWLTTFFAPDEDSEREFATLATLGEELAEYGINAGFEENISPLVFFTWLRSRLEEQEQGL 649 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 F+ G + C ++PMRSIPF+VV L+GMNDG +PRQ FDL++++P++GDRS R++D Sbjct: 650 GFMTGGITFCAMLPMRSIPFRVVMLIGMNDGAFPRQSRAPSFDLITRQPQKGDRSLRNED 709 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLE+++SA++ LYISY+G+SI+DNSE PSVLV EL+D + ++ LP + + Sbjct: 710 RYLFLESILSARELLYISYVGQSIRDNSEIPPSVLVSELLDAVRRAFVLPNESS------ 763 Query: 773 EARVKAHLTCLHTRMPFDPQNY-QPGERQSYAREWLPAASQAGKAHSEFVQ--------- 822 ++ HL H PF + + SY+ E A + ++ Sbjct: 764 ---IEQHLVVRHRLQPFHHDYFSEHSPLASYSSENYYALIASEQSLQAVPPIRSFISTAL 820 Query: 823 PLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQ 882 P TV LE L F+ +P F + RL + + D+EPF +E L RY++ Q Sbjct: 821 SEPTAEWRTVQLEQLLHFYDNPSAFFLEQRLGIKPEGLLLPLQDSEPFAVESLERYRLQQ 880 Query: 883 QLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP---GQ 939 +LL A + AE L F++ G LP GE+ + T QE+ A + Sbjct: 881 ELLEAQLRGQPAEALLPLFKSRGMLPPAQHGELLFATVMQEVDDFAATLRQHLAGEVALA 940 Query: 940 SMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS--GGNGESR 997 +E+D+ +I G L + + +LR+RP+ + V + W+EHL+ CA G + Sbjct: 941 PLEVDIEVGEFRIVGRLDGIWANAMLRYRPARMKVRDRFRWWIEHLLLCALQPTGYPLTT 1000 Query: 998 LFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAM 1057 L DGEW +PP+ + +L+ L++ Y +G+ PL P S A++ DA + Sbjct: 1001 HMLMSDGEWSYPPI--DNPHQHLTTLLQRYWQGLCEPLPFFPRSAYAFVLKGMDA--NHH 1056 Query: 1058 LDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 LD + A ++ N +GEG D QR + + +E + P+ Sbjct: 1057 LDVGKGIDAAYREWRDDTFTN--RKGEGSDSAIQRCFGAAANPFSDTFIELALELFTPMM 1114 Query: 1118 R 1118 Sbjct: 1115 E 1115 >UniRef50_A1S6U9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6U9_SHEAM Length = 1163 Score = 1044 bits (2701), Expect = 0.0, Method: Composition-based stats. Identities = 411/1152 (35%), Positives = 615/1152 (53%), Gaps = 74/1152 (6%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M + SN ++ L + + + + E ILVQS GMA WL++ ++ GIAA + Sbjct: 1 MFTLVQSNHMERLAKRLADELNQAS-GNVLATEQILVQSPGMATWLRLEIAAHNGIAAAL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLP++FIW + +LP +PKE+AF K +M+WKLM LLP+L+E+ F LR YL+ DS Sbjct: 60 SFPLPSNFIWSLCYALLPGVPKENAFTKDAMTWKLMALLPRLIEKPHFEPLRDYLSSDS- 118 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV-----------EGLGEAQAWQAPLW 169 KLFQL+S+ AD+FDQYLVYRPDW+ WE G L + WQ LW Sbjct: 119 PLKLFQLASRVADIFDQYLVYRPDWIVTWELGENDLSPTGSPLTQGAALPDNCLWQPLLW 178 Query: 170 KALVEYTH-QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 +ALV+Y +LGQ WHRANL+Q + L + T LP R+F+ GIS+LPP L+ L Sbjct: 179 RALVQYNRDELGQSHWHRANLHQALVAALSNPNTDISALPRRLFVFGISSLPPQTLEVLY 238 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 ALG I + +L +PCR YWGDI D AKL + + H + Sbjct: 239 ALGSRIPVTMLSLSPCRQYWGDIVDSKLRAKLALKYKAHKMLPE---------------H 283 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ---ELDAFVDVTPDNLLHNIQSDILEL 345 + +VGNPLLA+ GK+GR+ + L+ L + + +LL +Q+DIL++ Sbjct: 284 WEETLEVGNPLLAANGKMGRELLDLVLSLPPEHFTLDDSGYETNDDSHLLGRLQNDILDM 343 Query: 346 ENRAVAGV-NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE-DPTL 403 E ++ + ++ K LD D+S+ CHSP REVE LHD LL +L + L Sbjct: 344 EVAGAPLCADLARYQSNEGKFLLDEQDNSLVLRSCHSPLREVETLHDHLLGLLSDRQGRL 403 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 + ++I+VM+ D+ +Y+PFI AVF S + Y+PYAI+DR A + P++ F++LL + S Sbjct: 404 SAKNIVVMLPDVAAYAPFIDAVFASRRGEHYIPYAIADRGAVEESPLIHGFLTLLDINHS 463 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 RF ++L LL++P + A+F + EE L L W++E+G+RWG D + +L LPA +H+ Sbjct: 464 RFGLSEILGLLEIPAVMAKFKLDEEELSRLGNWLSEAGVRWGRDAQSREKLGLPAFDKHS 523 Query: 524 WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 W FG+ R+LLG+++ + LP+ G A+ VG L + L+ + A Sbjct: 524 WAFGIRRLLLGFSLGDEGDFYHGTLPFAGVEGQQAQCVGKLLDFIEHLDEFAARFAAADS 583 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQW----QAIIAEGLGAQYGDAVPLSLLRD 639 L + + F P E + + LI + +A+ + + L ++ Sbjct: 584 LTLKFAELSRLTDTLFAPLPEYQEELNLIRETLCDTQKALQSSASSESSLSDISLEVICQ 643 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 L +L R+ QRFLAG VN CTLMPMRSIPFKVVCLLGMN+G+YPR P+GFDLM++ Sbjct: 644 TLGSKLTDARVGQRFLAGSVNFCTLMPMRSIPFKVVCLLGMNEGIYPRVQHPVGFDLMAK 703 Query: 700 KP-KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 P +RGDRSRR DDRYLFLEAL+SA+++LYIS+IGRS +D+SER PS+LV EL+D S Sbjct: 704 TPARRGDRSRRLDDRYLFLEALLSAREQLYISFIGRSERDDSERLPSMLVSELLDCCELS 763 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER--QSYAREWLPAASQAGKA 816 Y+ S+ ++ L PFD + Y + S+A +W P ++ K Sbjct: 764 AYV----------SQGKLVNRLVKQQPLQPFDHRLYLTNQDITASFAAQWCPQETRPPKP 813 Query: 817 HSE-FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGL 875 + + + + + L +L RF+ P R F Q RL+++ + D+EPF ++ L Sbjct: 814 FIDAVLDEVDEDEHKVLELASLIRFYRDPARFFCQRRLRLDLSHRLDALDDSEPFDVDAL 873 Query: 876 SRYQINQQLLNALVEQDDA------ERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 RYQ+ ++LNA +E D+ + L R AG LP F ++ + + +++ + D Sbjct: 874 GRYQLQDKMLNAALEADEIRQQLAVDTLCDRLAGAGVLPMAPFDKLLFASYQRDLAPILD 933 Query: 930 --RVIACRQPGQSMEIDLACN-GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV 986 R I GQS+ I L N G ++ G + +V GLL RP + L+L HL Sbjct: 934 RCRFIMGETEGQSLRISLVLNQGHKLVGTIDKVFAKGLLVARPGTAKAKDVLALYLRHLC 993 Query: 987 YCASGGNGESRLFLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAW 1045 CASG S FL G + F PL + AL L I Y E + P ++P + Sbjct: 994 LCASGYRQSS--FLLDVGNFHAFLPLTPDNALTSLEDFISHYFESVRTPSPLIPALAMTY 1051 Query: 1046 LKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAI 1105 ++ + ++ +L + TK+ + GE + +RL+ A Sbjct: 1052 IEALAEG-----ASEEESLAELSTKW-----DDGNGMGEIAEPHNERLFEFPASFATPAF 1101 Query: 1106 VEQSQRFLLPLF 1117 ++R PL Sbjct: 1102 TVVAERLWKPLL 1113 >UniRef50_A8ZX08 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX08_DESOH Length = 1085 Score = 1033 bits (2672), Expect = 0.0, Method: Composition-based stats. Identities = 360/1131 (31%), Positives = 547/1131 (48%), Gaps = 73/1131 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 + + SNR+++L + LD+PF E I+VQS GM +WL M +++ GI A+ Sbjct: 1 MYFFTSNRMEMLSRAFCEALTAYPLDNPFARETIVVQSMGMKRWLSMEMARHTGICAHNR 60 Query: 62 FPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F P +F+ M + +P ++M+W + +L + + L+ YL D D Sbjct: 61 FLFPNAFLNQMLQTAFADAVPVSPDVGVEAMTWAVFPVLADVFAHPALSPLQAYLQ-DGD 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K +QL+++ AD FDQYLV+RPD L QWE G L + WQA LW+ L+ Sbjct: 120 VIKRYQLAARIADTFDQYLVFRPDMLLQWEAGAL--PADPHEKWQAHLWRLLISQGW--- 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 RA +++F+ +S LPSRV + GIS LP ++Q AL +E+ Sbjct: 175 --AEQRAERWKQFLSLAQSGALAGSTLPSRVSVFGISTLPRFHVQVFAALSAFLEVRFFV 232 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPCR+YWGDI E +A + + + GN LL Sbjct: 233 LNPCRHYWGDILS-----------------TYEKKQVETGADARDIPEAARHLETGNSLL 275 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS G + RD+ ++ D QE F +L +Q+DIL+L++ A Sbjct: 276 ASMGMVARDFFAMVED-HPHQETSLFAPAGETTMLACLQNDILDLKDAADQE-------- 326 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + +D D+S+ VCHSP REVE LHD LLAM E D L+P D++VM +++ Y+P Sbjct: 327 ---RVRVDGNDASMQISVCHSPMREVEALHDNLLAMFEADAGLSPEDVLVMAPNMEVYAP 383 Query: 421 FIQAVF--GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 +++AVF G+ + +PY ++DRR++ PV+ F+ L+ L +SRF VL +L+ Sbjct: 384 YVEAVFDAGADDGGQRVPYTVTDRRSKSGSPVVRTFLGLMDLWESRFGISAVLEILESAF 443 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 + RFDI E + QW+ ++G+RWG+D + +LP ++TW+ G+ ++LG AM Sbjct: 444 VRERFDIGEAEFFRISQWLVDAGVRWGLDGAFKTDRDLPEFSENTWKQGIDSLVLGCAMA 503 Query: 539 S-AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 + + +LPYD G + + + L + R W + ++ + Sbjct: 504 GKGEILFDGLLPYDHMEGSDVDSLEKFLAFWHVLLRFYRQCGGAHAPGRWRQILTALVES 563 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F D EA + +I A+ A + V L ++R+ L +R + + F++G Sbjct: 564 MFAADPAVEADLQVITDALNALGESAAHAGFDGPVDLPVIREFLNRRFEGQAYGAPFISG 623 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 V C+++PMRSIPF V+CLLGMN YPRQ GFD++ + P+ GDRS+R+DDRYLFL Sbjct: 624 GVTFCSMLPMRSIPFAVICLLGMNVDDYPRQTFSPGFDMIRKHPRPGDRSKRNDDRYLFL 683 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 E L+SA+++LYISY+G ++DNS+R PSVLV EL DY+ + V Sbjct: 684 ETLLSARRRLYISYVGHDMRDNSDRPPSVLVGELCDYLRERF---------DAGPLTDVV 734 Query: 778 AHLTCLHTRMPFDPQNYQPG--ERQSYAREWLPAASQAGKAHSEFVQPLPFTL------- 828 +T H PF P + R SYA ++L AA Q L + Sbjct: 735 EKITTHHRLQPFHPDYFSSDTQARFSYAADYLAAARQLAGGRPGRPAALEPAVPVPDNAD 794 Query: 829 PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 P+T+ +E L RF+AHP R F RL + D + EPF + GL RY + ++L+ L Sbjct: 795 PQTIEVEDLCRFFAHPARYFLTQRLGLRVAETDRIPEEAEPFEVAGLERYDMARRLVERL 854 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD--RVIACRQPGQSMEIDLA 946 + +D A L RA+G LP+G G+ +E R + EI L Sbjct: 855 LAEDPAAPLENALRASGILPHGEPGKRLFERLKTGAAGFVAGVRAVTANGGLDRREIRLD 914 Query: 947 CNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEW 1006 NG + G L + R+R + + W+ HL + G S F +DG W Sbjct: 915 INGTTLCGTLDGIGEQEWFRFRYATARPGDFITNWIAHLAWSVDQGRAGSGRFAARDGWW 974 Query: 1007 RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQK 1066 F P+ + L L+ LIE YR+G PL P S + +T N +M Sbjct: 975 AFDPV--DNGLSILAALIEIYRQGRLRPLHFFPRSAFVYAETLQKKGNASM--------- 1023 Query: 1067 ARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 A + LQA+ GN V GE +D +Y LW + S + PL Sbjct: 1024 ALDRALQAWRGNERVAGEKEDPFYA-LWFAGDDPLDDEFETLSTAVVTPLL 1073 >UniRef50_Q3B473 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B473_PELLD Length = 1075 Score = 1030 bits (2664), Expect = 0.0, Method: Composition-based stats. Identities = 374/1139 (32%), Positives = 576/1139 (50%), Gaps = 86/1139 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 ++ SNR +VL A + PF E+++VQS GM +WL M L+++ G+ A Sbjct: 3 FNIHTSNRTEVLAADLASYFAASPPASPFSREVVVVQSRGMQRWLSMELARRLGVWAGAR 62 Query: 62 FPLPASFIWDMFVRVLPEIPKESA-FNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +P P + + ++F V P E+ ++ + +W +M LLP +L E F +L YL+ S Sbjct: 63 YPFPNAVVSELFRHVFPSKEDEAGRYDPECTTWSIMRLLPSMLRDEPFAILSRYLSGSSA 122 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 +L+QL++K AD FDQY ++RP+ LA WE G G WQ+ LW+ L Sbjct: 123 PLRLYQLATKIADSFDQYTLFRPEMLALWEAGE---GTAGPDGWQSILWRRLNAELGG-- 177 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HR L + F + T P R+ + GIS LP +L L A+ +H E++L Sbjct: 178 ---RHRGILKEAFC---RNGTLPDAVFPRRIALFGISYLPQFHLDILSAIARHREVNLFV 231 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +P YWGDI L+ + +R E GNPLL Sbjct: 232 LSPTEEYWGDIVSRRTLSGMTHAERELHAE-------------------------GNPLL 266 Query: 301 ASWGKLGRDYIYLLSDL--ESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 AS G++GRD+ ++ ++ E ++ ++ ++D D LLH IQSDIL L Sbjct: 267 ASLGRIGRDFSDMVLEIPDEQNRTVERYIDPRRDTLLHAIQSDILTLSGTGEGE------ 320 Query: 359 SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 + D S+ H CHSPQREVEVLHDR+L MLE P L PRDI+VM DI++Y Sbjct: 321 -----RPVCSATDRSVQVHACHSPQREVEVLHDRMLDMLESIPGLAPRDIVVMAPDIETY 375 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 SPFI AVFGSA A+ +P++++DRR V A + LL L SR + ++ LL P Sbjct: 376 SPFITAVFGSA-AEGRIPFSVADRRLMNEGEVSSAVLRLLELHRSRASAPELFDLLSSPP 434 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 +A RF + L+ +R W+ ++ IRWGID++ +LPA Q+TWR G+ R+LLGYAM+ Sbjct: 435 VARRFGLDVSALQSIRGWIVDTRIRWGIDEEERSMNQLPAFRQNTWRAGIDRLLLGYAMD 494 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 S + + +LP++ G AE +G A + ++ +R GL++ R LEEW ML F Sbjct: 495 SRESCCEGILPFEGVDGGAAETIGLFADFIDAVDRFRHGLSKTRTLEEWRVFFISMLEHF 554 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 L + ++ ++ + + + Y D VP ++ L RL Q+ F+ G Sbjct: 555 MLTEEDSTREFLAVQDLMERMGEISRLSAYHDEVPPEVVIAWLQGRLQQKEQGLGFMTGG 614 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 V C+++PMRS+PF+VV +LGM+DG +PRQ P GFDL+S+ PKR DRS R +DRYLFLE Sbjct: 615 VTFCSMLPMRSVPFRVVVMLGMDDGAFPRQQHPPGFDLISRHPKRADRSVRAEDRYLFLE 674 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 ++SA+ LYIS++GRS +D+S PSVLV EL D I + LP R + Sbjct: 675 TILSARDVLYISFVGRSRKDSSPIPPSVLVSELFDAIDRGFLLPE---------GVRAEE 725 Query: 779 HLTCLHTRMPFDPQNYQP-GERQSYAREWLPAASQAGKAHSEFV-----QPLPFTLPETV 832 L H PF P + G SY+ E ++ A E + P P + V Sbjct: 726 MLLFSHPLQPFSPACFSAGGPLFSYSEENFLPHAEHSGAGPEPLFMDSPLPEPGEPLQRV 785 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 L L F+ +P F + RL + + + + EPF L+GL Y+I +L A++ + Sbjct: 786 ELMDLIGFYDNPSAFFLRYRLGLQPAGQVLPLDEREPFGLDGLDAYRIRAELAEAMLLEG 845 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL---ADRVIACRQPGQSMEIDLACNG 949 D R+ RFRA G LP G+ +++ ++ + R+ P +++ +L Sbjct: 846 DIGRVQDRFRAEGVLPPALSGDRLYQSLLEDAARFVRSVQRLAPISLPLPALDFELPLGP 905 Query: 950 VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG--ESRLFLRKDGEWR 1007 + ++G L ++ G L RP+ + + M+ W+ HLV C+ G L + +G +R Sbjct: 906 MILSGRLEGLRSSGQLFARPASMKARERMRSWIFHLVLCSLRPEGVDPETLLIMNNGAYR 965 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 E L +L+E YR G PL PE+ +W + D L+ A Sbjct: 966 LR--QPEAPGLLLQELLERYRSGQRMPLAYFPETSFSWEGKLEKGEGD-------ALKAA 1016 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEA----IVEQSQRFLLPLFRFNQS 1122 R + + G RGEGDD ++R + + ++ A E + + P+ + +++ Sbjct: 1017 RGAWRTSGFGG--ARGEGDDPAFRRCFGEAGFDSEAAGPLYFRELAAALVRPVLQHSEA 1073 >UniRef50_Q12LP5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Bacteria RepID=Q12LP5_SHEDO Length = 1375 Score = 1025 bits (2651), Expect = 0.0, Method: Composition-based stats. Identities = 404/1325 (30%), Positives = 614/1325 (46%), Gaps = 234/1325 (17%) Query: 1 MLRVYHSNRLDVLEALMEFIVERE-RLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++VL + ++ + E +LVQS GM+ WL++ +++ GIAA Sbjct: 1 MLTLIQSNQMEVLSEQLAKLLATPLDETNLLASEHVLVQSPGMSTWLRLEVARHNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD- 118 ++FPLP+SFIW + +LP++PK++AF K +M+WKLM LLP+LL+ DF L +YLT + Sbjct: 61 LEFPLPSSFIWQLCHTLLPDVPKDNAFTKPAMTWKLMDLLPRLLDDADFAPLANYLTTEL 120 Query: 119 -------------------------------------SDKRKLFQLSSKAADLFDQYLVY 141 D K +QL S+ AD+FDQYLVY Sbjct: 121 ATELAPELAPELATEIKPDQAAAAPDSRSQAIVLSAAQDAIKRYQLCSRIADIFDQYLVY 180 Query: 142 RPDWLAQWETGHLVE------GLGEAQAWQAPLWKALVEYTH-QLGQPRWHRANLYQRFI 194 RP+W+ WE + L ++Q WQ LW+AL++Y +LG +HRANL++ + Sbjct: 181 RPEWILAWEQNKPLTSLDNKLKLDDSQLWQPKLWRALIDYNRDELGASPYHRANLHESLL 240 Query: 195 ETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDP 254 E L + LP R+F+ GIS++PP L+ L L I + +L +PC +YWGDI DP Sbjct: 241 EALADEQSSVANLPQRLFVFGISSMPPQTLEILHQLAGRIPVVMLALSPCEHYWGDIIDP 300 Query: 255 AYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLL 314 A++ + ++ + + +VGNPLLA+ GKLGR+ + L+ Sbjct: 301 KTRARMALQY---------------ADKKQLAQDWESSLEVGNPLLANNGKLGRELLDLM 345 Query: 315 SDLESSQ------------ELDAFVDVTPDN----------LLHNIQSDILELENRAVA- 351 L S +++ D D LLH +Q DIL++E V+ Sbjct: 346 LALPSEHTDFGYDCYVKPWDINLHSDDENDAVPVNTPQNAKLLHGVQYDILQMETLGVSL 405 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 G + ++ N+R L P D SIT CHSP REVE LH+ LLAML P L P+DI+VM Sbjct: 406 GPDAALYNNIPNRRLLQPDDDSITIRTCHSPLREVETLHNHLLAMLSRCPQLHPKDIVVM 465 Query: 412 VADIDSYSPFIQAVFGSA------------PADRYLPYAISDRRARQSHPVLEAFISLLS 459 + D+ +Y+P+I AVFG+A + Y+PYAI+DR A P++ +F+SLL+ Sbjct: 466 MPDVAAYAPYIDAVFGTANAEASGIDGARQQGNSYIPYAIADRGAAAESPLINSFLSLLN 525 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + SRF +++ +L+VP + RF ++ + L +R W++E+ +RWG D+ + L LPA Sbjct: 526 INQSRFALTEIMGILEVPAILRRFKLSGDELSQIRLWLDEANVRWGRDEHSRAALNLPAF 585 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 Q++W FG+ R++LGYA +Q L G A+ +G L + L L+ +R A Sbjct: 586 EQNSWAFGIRRLILGYAFHDGAPLYQDTLLVPGLEGQSAQALGKLMNFLETLDDYRALFA 645 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 L + +L F D + + I + + E GA + + + +L+ Sbjct: 646 APCTTSSRLFELQTLLQDIFEADDDEREEIQAINEAIAKLSEELNGAGHQGMLDIEVLKI 705 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 QRL + R+ QR+LAG VN CTLMPMRSIPF +VCLLGMNDG YPR P+GFDLM+ Sbjct: 706 WFNQRLSESRVGQRYLAGSVNFCTLMPMRSIPFNMVCLLGMNDGDYPRVQHPVGFDLMAH 765 Query: 700 KP-KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 K+GDRSRR DDRYLFLEAL+SA+++LYISYIG+S +DNSER PS+LV ELI+Y Sbjct: 766 FGAKKGDRSRRADDRYLFLEALLSAREQLYISYIGQSERDNSERIPSMLVSELIEYCQLC 825 Query: 759 HYLPGDEALNCDESEARV-----------KAHLTCLHTRMPFDPQNYQPGE------RQS 801 + P + E ++ A L PFDP+ ++ + +QS Sbjct: 826 YLTPEMKEQLSKLDEEQILALSKPCDDALLARLIQAQPLQPFDPKLFRDNQALGIALQQS 885 Query: 802 YAREWLPAASQAGKAHSEFV-----------------------------QPLP------- 825 Y +W P ++ A K + Q LP Sbjct: 886 YHSQWCPPSTPANKTTTAPASAAASGSASAETSVNTWVMNSSGRFLGPNQSLPQSILADS 945 Query: 826 ---------------FTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPF 870 + L L RF+ +P + FF L+V+ + + EPF Sbjct: 946 LWPQWHSDLEERAVFAATDAELELSALLRFFRNPSQFFFNRSLKVDLSLDIQADDNDEPF 1005 Query: 871 ILEGLSRYQINQQLLNALVEQD----------------DAERLFRRFRAAGDLPYGAFGE 914 L L RY + +LL+ ++ D L + +AAG LP F E Sbjct: 1006 SLNALERYLLQAKLLDKILAPDLDTSDLDNNGDDRKKTPEASLTQALKAAGSLPMAPFDE 1065 Query: 915 IFWETQCQEMQQLADRVIACRQP-GQSMEIDLACN------------------------- 948 + ++M L RV R + ++L Sbjct: 1066 LLLSQYQRDMAPLIGRVQFMRGEQCEPRSLNLELEFSFSPGQILANSLELSEISLEPALI 1125 Query: 949 --------------GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG 994 + + G + + P GL+ +RP ++++L HL ASG Sbjct: 1126 NSPELAHNAAQAPLKLTLLGRIDDILPKGLINYRPGAAHGRDLVRVYLRHLCLNASGQQQ 1185 Query: 995 ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQN 1054 S L F P+ A L I Y +G + PL +P + A+++ Sbjct: 1186 TSYLLDMA-QFHSFAPITPAHATAQLKAFILAYIQGQTRPLCFMPRTAFAYVEA------ 1238 Query: 1055 DAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLL 1114 + Q+ + + GEG + RL+R T + L Sbjct: 1239 ------PGSHQEKLIAAQKLWRDEQNQLGEGFEPHNHRLFRFPDDFTESGFGAIATTLLS 1292 Query: 1115 PLFRF 1119 P+ Sbjct: 1293 PMLSL 1297 >UniRef50_P44945 Exodeoxyribonuclease V gamma chain n=21 Tax=Haemophilus influenzae RepID=EX5C_HAEIN Length = 1121 Score = 1010 bits (2611), Expect = 0.0, Method: Composition-based stats. Identities = 410/1166 (35%), Positives = 629/1166 (53%), Gaps = 104/1166 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VY+SN+L+ + ++ + + +DPF+ ++ILVQS MAQWLQ+ L+++ GI+AN+ Sbjct: 1 MFIVYYSNQLEKQKEILSSLFKSLPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT--DD 118 FP+PASFIW ++ + LP E+ F+K SM W+LM L+P LE+E+F+ LR+YL+ Sbjct: 61 KFPMPASFIWQLYAQNLPATALENPFDKDSMMWRLMRLIPIFLEKENFSPLRNYLSSSPH 120 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA--------------- 163 S++ KL+QLSSK ADLFDQYLVYRP+W+ WE G + + Q Sbjct: 121 SEQYKLYQLSSKIADLFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQG 180 Query: 164 ---WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 WQ LW+ALV HRA L+ +F+ L P LPSR+FI GI ALP Sbjct: 181 NTKWQGELWRALVVDVKSDVNEATHRAALHNQFLALLADKK-APKKLPSRIFIFGIPALP 239 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 YL LQA+ ++IHL F NPC+ YWGDI D L L +RQR + E Sbjct: 240 TAYLNILQAISSEVDIHLFFNNPCQEYWGDISDLR-LDYLRSRQRYQFNKQDENQPLFSE 298 Query: 281 ENAGQLFNSD-------GEQDVGNPLLASWGKLGRDYIYLLSDLES---SQELDAFVDVT 330 + QL N+ +GNPLLA+WGK+GRD++Y+L E + ++A+ ++ Sbjct: 299 DQLSQLENAQFDVTYQKENLQLGNPLLAAWGKMGRDFLYILVRDEEHIPTYPVNAYQEIE 358 Query: 331 PDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLH 390 ++LL +QS IL LEN+ + + D ++T H CHS REVEVLH Sbjct: 359 SNSLLGQLQSQILHLENKPLN---------------IAKNDRTLTLHSCHSAMREVEVLH 403 Query: 391 DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD-RYLPYAISDRRARQSHP 449 D LL + +DP+LTP+D++VMVADI+ Y+P+IQAVFG D +P+++SD + +S Sbjct: 404 DYLLDLFNQDPSLTPKDVVVMVADINQYTPYIQAVFGQKNGDVPQIPFSLSDNKLSESDV 463 Query: 450 VLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDD 509 ++ ++++LL L +S F +EDVL LLD+P + RF+I+ L +R+WV +SGIR+G+ + Sbjct: 464 LVSSYLTLLRLKESNFSAEDVLVLLDIPAMRERFNISLADLPLVREWVTDSGIRFGLQKN 523 Query: 510 NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLM 569 ++W+ GL RM+LGYAM QG WQ L + S GL EL G+L+ Sbjct: 524 Q------DGINFNSWQAGLERMILGYAMREEQGIWQDSLGLNSSYGLKGELAGNLSHFFT 577 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYG 629 L+ L Q +E+W + +L+ FF+ + +T + I+++ + + Sbjct: 578 ALSALHETLQQAHSIEKWQEILTALLSDFFVRNEDTSDMIFYIQEKINELAEHLKTLHFN 637 Query: 630 DAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 + + ++ D + +L+ S +FLAG VN CTL+PMRS+PFKVVCLLGMND YPR Sbjct: 638 EELQAEVIADVITMQLEDAPNSLKFLAGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQ 697 Query: 690 APLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 P FDLM ++GDR RRDDDRYLFLEAL++A+ YISY+GRSI DN + PSVLV Sbjct: 698 TPNSFDLMQYHYQKGDRVRRDDDRYLFLEALLAARDYCYISYVGRSITDNQPKEPSVLVS 757 Query: 750 ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ--SYAREWL 807 +L+DYI Q E+ V H F P N++ E+ S+A +WL Sbjct: 758 QLLDYINQGQ----------KENVLTV-----IEHPMTAFSPDNFKNNEKFTRSFATKWL 802 Query: 808 PAAS-QAGKAHSEFVQPLPFTLP--ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 P A A +SEF + L E V L+ L F +PV+ FF+ +L V FR +D I Sbjct: 803 PIAQFDASSNNSEFAVTMTENLEKIEEVELDALVSFVENPVKFFFEKQLGVYFRDKDERI 862 Query: 865 PDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEM 924 D+E F L GL Y +N L+ +++ + FR+ G LP FG+++ E + Sbjct: 863 ADSENFTLSGLDNYSLNNDLI--YLDEQNFADYFRQAEVKGVLPRAEFGKVYAENIRDNV 920 Query: 925 QQLADRVIACRQPGQ-SMEIDLACN------GVQITGWLPQVQPD--GLLRWRPSLLSVA 975 + ++ + S++ +L+ + +++ G++ + D ++ W + Sbjct: 921 LEFKKKIADLGEAKHASVDFNLSVDWQNENQKIRLFGYMDALFGDDSQVIHWHFAKYKDR 980 Query: 976 QGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPL 1035 ++ W+ +L+ C + N + +D PP+ E AL L ++ Y + Sbjct: 981 YCIRPWIYYLIQCVTQENAVPAKLITQDKVLELPPIEREVALAQLQIYVKDYLQSQIEIQ 1040 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR 1095 LV T + + + D++S +K + E N G D ++ R+ Sbjct: 1041 LVP---------TVRNISDFIVSDENSVSEK----LQELTESNGF--GPKADPYWSRVLA 1085 Query: 1096 QLT----PETMEAIVEQSQRFLLPLF 1117 Q + PE + +++Q++ + LF Sbjct: 1086 QTSRFKQPENIAKLLKQTKAWFGLLF 1111 >UniRef50_C0N788 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N788_9GAMM Length = 1069 Score = 1001 bits (2587), Expect = 0.0, Method: Composition-based stats. Identities = 376/1136 (33%), Positives = 587/1136 (51%), Gaps = 90/1136 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++ +SN L A + + E L P +PE I+VQS +++WL + L++ IAAN+ Sbjct: 1 MLKIVYSNDTGQLAAWLADHLLSEPLP-PLQPETIIVQSNELSRWLSLRLAKTHQIAANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +FP P+++IW +F ++ P++P +S + K+ M+W+L LLPQ + F + YL D D Sbjct: 60 EFPFPSAYIWQLFRQLWPDVPLQSPYAKEPMAWRLFELLPQAASLDGFEAVAAYLGGDDD 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K ++L+ K AD FDQYL+YRPDW+ QWE G +WQ LW+ L Q Sbjct: 120 DLKRYELAEKIADTFDQYLMYRPDWVQQWEQGQAT-------SWQGKLWQMLTADDPQ-- 170 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HRA L Q+ + L + PPGLP+R+ I GISALPPVYL+ + L ++++I L + Sbjct: 171 --PMHRARLLQQLHDLLSHSDVVPPGLPNRISIFGISALPPVYLEIVNLLARYVDITLYY 228 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +P +YWGDI DP + L ++ E + G+PLL Sbjct: 229 LSPSEHYWGDIIDPKKQQRQQL----------------------LLDFNEDEIEPGHPLL 266 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS GK G+ + L + + + FV+ + +L ++ DI E+ Sbjct: 267 ASLGKQGQAFFRQLQETQH-LDDSCFVEPVGETMLSQLKRDIFEM--------------A 311 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 +D D+SI+ VCHSP RE+E+LHD+LLAM E++PTLTP DI+VM DID Y+P Sbjct: 312 TDQPSVAVKDDTSISIQVCHSPMREMEILHDQLLAMFEQNPTLTPTDIVVMTPDIDVYAP 371 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I+AVF +A R++P++I+D +Q ++ F S L LP SRF E +LA+L+ P + Sbjct: 372 WIEAVFATADKSRFIPFSIADSSGQQESLLITTFYSFLQLPQSRFDVESILAMLECPAVQ 431 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 RF + + L ++R+W ++ RWG+D ++ L+LP T +TWR GL R+LLGYAM Sbjct: 432 RRFGLDDAALNWIREWCQQTRTRWGLDANDKAALDLPDTESNTWRAGLDRLLLGYAMPLN 491 Query: 541 QGE-----WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 + + + L D SG A +V L + L+ WR+ LA++ + +W L Sbjct: 492 EPDQPWRLFDGQLAMDGISGERAHIVAALCDFIDALDAWRQRLARQNTIADWQKQLNQCL 551 Query: 596 NAFF----LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 +AFF L + + E +T I Q + + + A + + L+ L L + Sbjct: 552 DAFFNTEGLEETQFETEITAIRTQLERLSSGAKQADFEQTIGADLILSWLQSHLQPVDNA 611 Query: 652 QRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDD 711 RFL + C ++PMRSIPF VVCL+GMND V+PR+ + FDL++ + GDRSRRDD Sbjct: 612 HRFLGHGITFCGMVPMRSIPFDVVCLVGMNDEVFPRRQPSVSFDLLAHDHREGDRSRRDD 671 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE 771 DRYLFLEAL+SAQQ Y+SY+G S+ DNSE PSVLV +L D + + E Sbjct: 672 DRYLFLEALLSAQQTFYMSYVGASVVDNSEIPPSVLVSDLQDLLAERF---------ETE 722 Query: 772 SEARVKAHLTCLHTRMPFDPQNYQ--PGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 + A + + H F + + + S+ P +A+ F PLP Sbjct: 723 TTATILEQIITKHPLQAFSRRYFDGNNDQLFSFNASHCPTQEMLEQAN-WFETPLPEADD 781 Query: 830 E--TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 V + L RF+AHP + + RL + ++ + EPF L+GL +Q+ Q +++ Sbjct: 782 SWRQVTRDQLIRFFAHPTKFILRERLGIRLELDEEALESREPFALDGLESWQLRQWIVDE 841 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC--RQPGQSMEIDL 945 + Q E L +A G LP G G+ ++E + Q + +++ Q ++ IDL Sbjct: 842 SLSQHSDEGLKPVVQATGMLPQGRLGDAWFEKESQTVDDFIEKLRPVLPEQGWITLAIDL 901 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES--RLFLRKD 1003 +G QI G LPQ GLLR+R + + W++HL+ G + + +D Sbjct: 902 NIDGFQINGQLPQFSQQGLLRYRLAKKKGKDLIAAWIDHLILNILKPEGVTLQTHLILQD 961 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 E+ F P+ L+ L++ Y +G PL ++ A+ T + + Sbjct: 962 AEYVFLPVTGPT--QILANLLKLYWQGCHLPLKFFDQASLAFAATYFGKKP--------- 1010 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 ++ K + + GEGDD +Y+RL+ Q P + E + + PL + Sbjct: 1011 -EQKFKKAHDKWSASGDFAGEGDDNYYRRLYSQ--PPLDDEFAELAIQVYEPLQQH 1063 >UniRef50_Q7VRF1 Exonuclease V, subunit n=2 Tax=Candidatus Blochmannia RepID=Q7VRF1_BLOFL Length = 1139 Score = 998 bits (2580), Expect = 0.0, Method: Composition-based stats. Identities = 387/1149 (33%), Positives = 629/1149 (54%), Gaps = 43/1149 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN LD+ L+ ++ ++L +P +PE+IL++ M+QW+++ L+ FGI+ANI Sbjct: 1 MFMVYHSNCLDLFMRLVINVMSNQKLSNPMKPEIILIEHKIMSQWIEIELTNYFGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F SFI + + +L + S F+K M WK M +LP+L + +++ YL D + Sbjct: 61 IFMTIQSFIRKISIELLSDGIFISNFSKNFMYWKFMEILPKLYSSQKCAVIQKYLCFDVN 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG-EAQAWQAPLWKALVEYTHQL 179 ++KL QLS + LF +YL+YRPDWL W++ +++ L E Q WQ+ +W+ + +T Sbjct: 121 QKKLGQLSEQLVSLFLEYLIYRPDWLDMWKSNKIIDNLNIEHQLWQSEVWRMFLTHT--- 177 Query: 180 GQPRWHRANLYQRFIETLESA--TTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Q + + N R I L++ LP R+FI G++A+ P+Y + L+ L HI+I+ Sbjct: 178 -QLQLYEFNSENRCIFLLQNNYQQIDWTKLPDRIFIYGVTAIAPIYWKILKLLSDHIDIY 236 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQ-RRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 L NPC YW + + K + Q HS+E R+ + + N L Sbjct: 237 LWVINPCEKYWNNTDYMDDINKHVYHQSNNHSWEVRKKYYYNNRCNKSIL-------KSN 289 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQ-ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 LL SWG++G ++LLS LE E+ +FV +++LH +Q++IL+ + + V Sbjct: 290 YSLLNSWGEVGFHTLHLLSQLERPLFEIQSFVFPKTNSMLHILQNEILQFKQYSSNEVQK 349 Query: 356 EEFSRSDN----KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 E + K L D SIT H CHS RE+EVLHD LL M D L P ++IVM Sbjct: 350 ESSIFKKSANMQKNILKSTDQSITIHECHSLYREIEVLHDNLLRMFSNDSALLPGEVIVM 409 Query: 412 VADIDSYSPFIQAVFGSAPADRYLPYAI-SDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 +I+ Y+ I+++F + +R LP++I SD HP++ +++L++P SRF E++ Sbjct: 410 APNINCYTESIKSIFNNM-FNRQLPFSILSDHSDYIHHPIISTILNILAIPTSRFTVEEI 468 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 +LL +P +A++F I +E ++ LR W+ ESG+RWG+D D LP T +TW FG R Sbjct: 469 FSLLSIPSIASKFSIDDEAMKLLRLWIVESGVRWGLDQDTQENFNLPVTEWNTWYFGFKR 528 Query: 531 MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPV 590 MLLGYA+++ G W+++ PY+ S +V L L L WR L L++W+ Sbjct: 529 MLLGYAIKNQNGSWKNIFPYNYISEEYVHVVSGLGEFLEILKKWRNRLNGAYTLQKWMLY 588 Query: 591 CRDMLNAFFLP---DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 R+M+N FF + E A+ L++ W I+ G+ Y + V +++LRD+L +L Sbjct: 589 FREMINDFFDFSKLNVEENQALFLLKNCWTNILESGIQLGYINTVTINILRDKLLIQLMN 648 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 ++ + +FL +N C + PM I K++C++G++D +PR F+L+S++ + GD + Sbjct: 649 QKKNYQFLPNAINFCNITPMCFISCKILCIIGIHDNEFPRDRFSYDFNLISKRFRIGDNN 708 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGR-SIQDNSERFPSVLVQELIDYIGQSHYLPGDEA 766 D Y FL A + ++KLY+S+I + + + S+ + ELI+YI Q YL GD+ Sbjct: 709 ICGQDYYAFLLACLLPKEKLYLSFINKLAFCYGNSISSSIFIDELIEYIAQRFYLIGDQN 768 Query: 767 LNCDESEARVKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAASQA-------GKAHS 818 L+ + R++ +L ++ MPF N+ ++QS+A EWL AA Sbjct: 769 LDIISNIKRIRKYLLYKYSCMPFSCSNFIAYSKKQSFANEWLAAAYADKNITVFTQSQQQ 828 Query: 819 EFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT-EDSEIPDTEPFILEGLSR 877 LP + T+ L L F+ HPVR +FQ RL+V F + + E F + L R Sbjct: 829 FLTTSLPHIIVSTILLRDLYDFYRHPVRMWFQKRLKVYFYQCTHDILLNDETFFVSNLRR 888 Query: 878 YQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP 937 +Q+N +L++ + + + L+R F +G LPYG+FG+++W QC++M +LA ++ Sbjct: 889 FQLNVKLIDYFIHNKNIDTLYREFYDSGMLPYGSFGQLYWIEQCEKMYKLASKIKRYYSS 948 Query: 938 GQ-SMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES 996 ++ I +++ G L VQ +GL+RW+P+ LS+ +WLEHL+YC SGGNGES Sbjct: 949 KIFTLNITFKIETIKLIGELHSVQENGLIRWKPAYLSMRDCFLVWLEHLIYCFSGGNGES 1008 Query: 997 RLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 LF D W FP + QA L LI GY G++ PLL+L +SGGAW+ +D N Sbjct: 1009 WLF-GTDSTWHFPNFSKIQAQELLFFLISGYCLGINVPLLLLYKSGGAWINYVFDWNNRV 1067 Query: 1057 MLDDDSTLQKARTKFLQAYEGN-----MMVRGEGDDIWYQRLWR-QLTPETMEAIVEQSQ 1110 + D +KA + + ++G+ E D + ++L L E + I + S+ Sbjct: 1068 ICSDPDIHKKACQRLIYTWQGSSDDTQFSYLRESQDPYLRKLIPLYLNEEDIRIITDVSK 1127 Query: 1111 RFLLPLFRF 1119 +LL L R+ Sbjct: 1128 DYLLDLMRY 1136 >UniRef50_Q7NQR0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Chromobacterium group RepID=Q7NQR0_CHRVO Length = 1065 Score = 994 bits (2571), Expect = 0.0, Method: Composition-based stats. Identities = 380/1128 (33%), Positives = 570/1128 (50%), Gaps = 80/1128 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNRL+ L L + + L DPF E ++VQS GM +W+ + +++K GIAANI Sbjct: 1 MLFLYQSNRLEQLGELFCGMTQAMPLADPFAAETVIVQSRGMGRWITLDVARKAGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DF LPA+F W + +V+P++P++SAF + ++W+L+ LLP L F + HYL Sbjct: 61 DFALPAAFAWRLMQKVMPDLPRKSAFVPEVLAWRLLALLPSLSGEP-FGPVLHYLEGG-- 117 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + F+L+ K AD+FDQYLV+RPDW+ WE G L+ GLGE +AWQA LW+ L E Sbjct: 118 EAAAFELAGKIADIFDQYLVFRPDWIRAWEAGELL-GLGEDEAWQASLWRRLAE-----S 171 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 P HR + +F L+ P LP RV + GI++L P+YL ++ L + ++ L Sbjct: 172 DPGRHRVRMLDQFFADLK-----PEHLPPRVTLFGIASLAPMYLALVKRLSQLTDVCLFT 226 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPC YWGDI D L KL D G+PLL Sbjct: 227 LNPCEAYWGDIVDARRLLKLRQ-------------------------AGDLFATQGHPLL 261 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 +S GK GRD+ L+++ F D LL +Q DIL+L + + Sbjct: 262 SSLGKQGRDFFELIAEDAELDAKPLFAAPKGDGLLARLQRDILQLNDPSQL--------- 312 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 RP DP D+SI H CH P RE+E L DRLLAM DP L+P D+ V+ DI++Y+P Sbjct: 313 ---PRPFDPADASIEVHACHGPMRELEALKDRLLAMFAADPKLSPADVAVLTPDINAYAP 369 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I AVFG +PY+I+DRR + P+L F ++L L DSRF +++VLAL D P L Sbjct: 370 YIDAVFGRRDDAPNIPYSIADRRVEREQPLLSTFAAVLKLADSRFAADEVLALFDCPALL 429 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME-- 538 ARFD+ + L +++ WV ++GIRWG D + L LPA +TWR+GL R+LLG + Sbjct: 430 ARFDLADADLAFIQDWVRDAGIRWGRDAAHKASLGLPAEAAYTWRWGLDRLLLGTVLPPA 489 Query: 539 ---SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 G + +LPY + G + E + A L+ +Q ++W Sbjct: 490 LAGDDAGLFAGLLPYTAAQGQLGETLARFAGFYDALDALADAWSQPAAPQQWAQRFHQAC 549 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 + FL + + EAA+ L+ + + A +G V L++ RD L ++L +Q FL Sbjct: 550 DRLFLAEGDDEAALELLREALAELAENADLAGFGQPVGLAVARDWLLRKLSSSS-AQGFL 608 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL 715 +G V C ++PMRSIPF+ +CL+GMNDG YPR P+ FDL+++ P+RGDRSRR DDRYL Sbjct: 609 SGGVTFCAMVPMRSIPFQALCLIGMNDGAYPRDERPVSFDLVARNPRRGDRSRRFDDRYL 668 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 FLEA++SA+ +LY+SY+G+S + PS LV EL+D + Sbjct: 669 FLEAILSARGRLYLSYVGQSARSGEPLPPSPLVSELLDTLSAMC-------------GED 715 Query: 776 VKAHLTCLHTRMPFDPQNYQPGE--RQSYAREWLPAASQAGKAHSEFVQPLPFTLPET-V 832 + A LT H PF P+ + G+ S+ + A + + FV PLP T V Sbjct: 716 MAARLTLRHPLQPFSPKAFDGGDARLASFEPAFAAALAAPPAEPAPFVAPLPDEGAATVV 775 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 L RFW +P RA+ RL + P EPF + + + + +QL+ A++ Sbjct: 776 NLHDFIRFWQNPARAWLADRLALRVAYSGDAQPAREPFAMARDASHALRRQLVEAMLHGK 835 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR--QPGQSMEIDLACNGV 950 + + +R AAG LP G G+ + + + + +LA R+ + + L G Sbjct: 836 PPQPVRQRVAAAGLLPCGELGQAWLQEEGRASVRLAGRLPGALRGEALPPQPVHLEIAGF 895 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPP 1010 + G L ++P+G L + ++ AQ + LWL HL+ CAS G + D Sbjct: 896 TLVGELYGLRPEGRLDFIVGKMNAAQRVALWLSHLILCASRPAGIAPHSACYDDAGSTLL 955 Query: 1011 LAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTK 1070 A L + +++G + PL + A+ + + D L A K Sbjct: 956 HDEIDAAGLLVPWLARWKQGQAQPLPFFGRTSWAYAEALAKNPD----KPDKALAAAWQK 1011 Query: 1071 FLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + + V + D+ +R +P + ++ LLPL Sbjct: 1012 WEPNFILGDGVA-QKDEPAIALAFRHQSPLEDPLFAQLAETLLLPLAE 1058 >UniRef50_A4JS85 DNA helicase/exodeoxyribonuclease V, gamma subunit n=11 Tax=Proteobacteria RepID=A4JS85_BURVG Length = 1209 Score = 989 bits (2558), Expect = 0.0, Method: Composition-based stats. Identities = 396/1193 (33%), Positives = 563/1193 (47%), Gaps = 113/1193 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKF------- 54 L + H NR + L L+ ++ L P E E ILVQS G+AQWL++ L+ Sbjct: 9 LMLIHGNRSEQLRDLLVEWIKHYPLA-PLESETILVQSNGIAQWLKLALAADRDPATGEG 67 Query: 55 --GIAANIDFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTL 110 GIAA +D LP+ F+W + VL + + S F+K + W+LM +LP L R F Sbjct: 68 GCGIAAALDVSLPSRFVWQAYRAVLGAESVAEVSPFDKSRLVWRLMRMLPALAARPAFEP 127 Query: 111 LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQ 162 LR +++DD D+RK FQL+ + ADLFDQY +YR DWLA+W G V + L + Q Sbjct: 128 LRRFISDDDDRRKRFQLAERLADLFDQYQMYRADWLARWADGDAVVLDARGGEQPLPDEQ 187 Query: 163 AWQAPLWKALVEYTHQLGQPRW-----HRANLYQRFIETLE--SATTCPPGLPSRVFICG 215 WQA LW LV R RA +++ F+ + P G+P R+ I G Sbjct: 188 RWQAALWHELVADVAGSDASREISSRGGRAAVHEAFMRRIAAWDDDRGPVGIPRRIVIFG 247 Query: 216 ISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELP 275 IS+LP L+AL AL + ++ + NPC +YW DI L R P Sbjct: 248 ISSLPHQLLEALAALARWSQVMMCVANPCAHYWADIVPDRDLL------------GRRQP 295 Query: 276 LFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS--------------Q 321 + + D +PLLASWGK GRD+I LL +++ Q Sbjct: 296 RQQRRTGMPAELDLDTLHLHAHPLLASWGKQGRDFIGLLDAFDNADAREHYGPKFARIGQ 355 Query: 322 ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHS 381 +D F LL +Q DI +L + D SI FHV HS Sbjct: 356 RIDLFESRGASTLLQQLQDDIRDLRPLRETQETWPDVDP--------ATDGSIRFHVAHS 407 Query: 382 PQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG--SAPADRYLPYAI 439 QREVE+LHD+LLA DP+L P+D++V+V DI++Y+P +QAVFG RY+P+++ Sbjct: 408 AQREVEILHDQLLAAFNADPSLRPQDVVVVVPDIEAYAPHVQAVFGLVDRSDPRYIPFSV 467 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 +DR R++ P++ A LL LP++R D+L LLDVP L RF I E L LR W+ Sbjct: 468 ADREQRKADPLIGALEMLLGLPNARLAVSDLLDLLDVPALRKRFGIDETDLPKLRAWIRG 527 Query: 500 SGIRWGIDDDNVRELELPATGQ----HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSG 555 + IRWG+ L LP HTW FGL RMLLGYA+ S G W + P+DE G Sbjct: 528 ANIRWGLHAQQRASLGLPLDEHAAAPHTWAFGLRRMLLGYAVGSEAGAWHDIEPFDEVGG 587 Query: 556 LIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP-DAETEAAMTLIEQ 614 L A L+G L L+ L+ R LA+ +W R++ FF D+E + ++ Sbjct: 588 LDAALLGPLVRLIDALDHAWRSLAEPATAPDWCERLRNLKQTFFSAHDSEDAYTLARLDN 647 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 QA + A+ D +PLS++ D +LD+ +SQRF AG V TLMPMR+IPF+ Sbjct: 648 VLQAWLDACTEARLTDVLPLSVVSDHWLSQLDEGGLSQRFFAGAVTFATLMPMRAIPFRR 707 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 VCLLGMNDG YPR P+ FDLM + GDRSRR+DDRYL LEAL+SA+ L++S++GR Sbjct: 708 VCLLGMNDGDYPRARVPMDFDLMRLHYRPGDRSRREDDRYLLLEALLSARDHLHVSWVGR 767 Query: 735 SIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY 794 SI DN R PSVL+ +L D++ L G D + LT H PF + Sbjct: 768 SITDNGVRPPSVLIGQLRDHLAAGWRLAGASGAGPD----ALVKALTVEHPLQPFSVAYF 823 Query: 795 QPGER-----QSYAREWLPAASQAGKAHSEFVQPLPFTL-PETVPLETLQRFWAHPVRAF 848 P +YA EW +P + + + L L F A PV+ F Sbjct: 824 PPDTNDAAAVFTYAAEWRDEPRACRDPAPPAATHVPAIVRDDPLSLRELAEFLAKPVKTF 883 Query: 849 FQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL---NALVEQDDA-----ERLFRR 900 F RL+V +++ + D EPF L+ L +++ +L+ A + DDA + Sbjct: 884 FSQRLRVALDVDETAVDDEEPFELDSLDAWKLQDELIGVQAAHMHDDDALVAARDARMAA 943 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ-----SMEIDLACNGVQ---- 951 R GD+ G FG++ + M +L E+ G Sbjct: 944 IRRRGDVVPGGFGDLASAALLEPMDELFAAYRKQLARWPVAIDGECEVAFQIAGESRVPG 1003 Query: 952 ITGWLPQVQPDGLLR-----------WRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL 1000 ++ WL Q + D R + + W+ HL +G + + + + Sbjct: 1004 LSDWLGQWREDSEGRRARLVLETSALVEKGAYRYHKLVGHWVRHLAANLAGRHV-TTVIV 1062 Query: 1001 RKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDD 1060 K G PLA +L+ L++ + GM PL V ES AWL + + + Sbjct: 1063 SKKGIVELRPLAGGDTEAHLTALLQVWDAGMREPLPVAVESAFAWLVRRFGKDGNGAAPE 1122 Query: 1061 DSTLQKARTKFLQAYEGNMMVRGEGD-DIWYQRLWRQLT----PETMEAIVEQ 1108 D T A Y G+ +GE R + EA+ E Sbjct: 1123 D-TRAAAEKAARSKYAGDAYNKGEVAKSASLGRAFPDFDALCADGRFEALAES 1174 >UniRef50_A1TWK1 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Marinobacter RepID=A1TWK1_MARAV Length = 1197 Score = 979 bits (2531), Expect = 0.0, Method: Composition-based stats. Identities = 392/1168 (33%), Positives = 575/1168 (49%), Gaps = 128/1168 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------- 53 H+N L+ L + +I + + P + E LVQS G+AQWL++ L++K Sbjct: 11 FHAIHANHLEDLRRAVVYICRQNPMP-PLQSETFLVQSNGIAQWLKLALAEKRTEDGVEG 69 Query: 54 -FGIAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLL-EREDFT 109 GIAA +DF PA FIW + VLP+ +P++S F+K+ + W+L LLP+L+ + E FT Sbjct: 70 GLGIAAGMDFLFPARFIWQAYRAVLPDGEVPEQSPFDKRRLVWRLYRLLPELVGQDEAFT 129 Query: 110 LLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEA 161 L +L + FQL+ K ADLFDQY V+R DWLA WE G V + L Sbjct: 130 PLARFLDGRDTDLRNFQLAEKVADLFDQYQVFRADWLAAWEQGKDVVITARGEEKALDTE 189 Query: 162 QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLES--ATTCPPGLPSRVFICGISAL 219 WQ LW+ LVE + R+ ++ RF+ + LP R+ + G+S+L Sbjct: 190 ACWQPLLWRKLVEDVG--SEAHTSRSQIHTRFMAQGQHISEPANASRLPKRIVVFGVSSL 247 Query: 220 PPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD 279 P L+AL L + ++ L NPC++YW DI L K ++ Sbjct: 248 PRQALEALYVLSRFSQVVLCVHNPCQFYWADIISDRELLKAERKRGAAH----------- 296 Query: 280 SENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS-----------QELDAFVD 328 Q+ + D NPLLA+WGK GRDYI LL + ++ Q++D F D Sbjct: 297 -PVLSQIDDPDQLHQHANPLLAAWGKQGRDYIRLLDEFDNPDDYRASFQTPGQKIDIFTD 355 Query: 329 ---VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQRE 385 V LLH +Q+DI L R + D S+ FH H PQRE Sbjct: 356 HGDVDNPCLLHQLQNDIHNLTPLQEI--------RQQQRTVDLTRDHSVVFHDAHGPQRE 407 Query: 386 VEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRR 443 VE+LHD+LLA DPTL PRD+IVMV DI+ Y+P IQAVFG R++P+ ISD+ Sbjct: 408 VEILHDQLLAAFNADPTLRPRDVIVMVPDINVYAPHIQAVFGRYSPGRKRHIPFTISDQG 467 Query: 444 ARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR 503 R PVL A +L+SLP SRF ++++LL+V + RFDI+E+ + R+WV + IR Sbjct: 468 QRHHEPVLIALETLMSLPRSRFGVSEIISLLEVAGIRDRFDISEDDIPLARRWVEGANIR 527 Query: 504 WGIDDDNVRELELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVG 562 WG+ + L+LPA ++TW+ GL MLLGY M W V PY E GL A L G Sbjct: 528 WGLHGKHRESLDLPAELERNTWQAGLRAMLLGYGMGD-DQPWGGVEPYGEIGGLQASLAG 586 Query: 563 HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF-LPDAETEAAMTLIEQQWQAIIA 621 L + QL + L R EW + ML FF + + + +Q + + Sbjct: 587 RLGEFVHQLEALWQALQATRTPGEWEALFSAMLEQFFHKVEGQDLLLLNRFRRQLEQWLD 646 Query: 622 EGLGAQYGD-AVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGM 680 + L A +PL++++D L Q LD+ ++QRFLAG VN TLMPMR+IPF+ VCLLGM Sbjct: 647 DALAAGLEQQPLPLNIVKDVLLQGLDEGGLNQRFLAGKVNFATLMPMRAIPFRKVCLLGM 706 Query: 681 NDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS 740 NDG YPR P+ FDLM+Q + GDRSRR+DDRYLFLEAL+SA+++LYIS++GRSI+D+S Sbjct: 707 NDGDYPRSRPPVDFDLMAQDYRPGDRSRREDDRYLFLEALLSAREQLYISWVGRSIRDDS 766 Query: 741 ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY------ 794 ER PSVL+ +L D++ + G + + V LT H PF + Sbjct: 767 ERPPSVLISQLQDHLNSLWKVAG-------QPDGSVTKALTTQHPLQPFSRDYFPRTNGV 819 Query: 795 ---------------QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQR 839 Q +Y REW A + S P T E + L L Sbjct: 820 GDGEETQPKPLADVLQARGLFTYEREWRSAHAVDNPEQSREALPY-QTPEEPISLTELAN 878 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL-NALVEQDDAERLF 898 F P+ F+Q RLQV F + + D E F L GL R++++ +L+ +V+ E L Sbjct: 879 FLKKPIDTFYQRRLQVRFEAVEEDDTDNENFDLNGLDRWRLDNELIHEGVVKAASEEELH 938 Query: 899 RRFRA-------AGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG-----QSMEIDLA 946 R A GDL G + L R + + + Sbjct: 939 ERLEATLDRMARRGDLGMGVTEHRLRTELAGRLPDLFQRYRGALAEWPEAVAEPLPFEFR 998 Query: 947 ----CNGVQITGWLPQVQPD------GLLRWRPSLLSVA---------QGMQLWLEHLVY 987 V++ + ++ + L+ LL+ + ++ WL HL Sbjct: 999 YSDSTGAVEVADLIDNLRCNPAGQLCRLVIASSGLLTGSGYSKKVRYANLLRDWLVHLAG 1058 Query: 988 CASGGNGESRLFLRKDG-EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWL 1046 SG E+ + +++G ++RFP +A EQA + ++ + E + L + E+G AW+ Sbjct: 1059 QLSGQPFETVILGKEEGRKFRFPVMAPEQAQKHFEAILGRWMEATTRTLPIHCEAGFAWI 1118 Query: 1047 KTCYDAQNDAMLDDDSTLQKARTKFLQA 1074 + Y + ++ D + + +A + A Sbjct: 1119 TSFYGGKK-SVGDHERAISEAEQAYSTA 1145 >UniRef50_D2BZV3 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Gammaproteobacteria RepID=D2BZV3_DICD5 Length = 1169 Score = 977 bits (2525), Expect = 0.0, Method: Composition-based stats. Identities = 415/1180 (35%), Positives = 586/1180 (49%), Gaps = 99/1180 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKF-----GI 56 L HSN + L ++ + L E E+ILVQS G+ QWL++ L++ G+ Sbjct: 10 LMAIHSNHPEALRDVLVSWMAAHPLSG-LENELILVQSNGIGQWLKLALARDTHDGGCGV 68 Query: 57 AANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHY 114 AA +D LP+ F W + VL +P+ S F+K + W+L+ LLP LL + +F L + Sbjct: 69 AAALDIQLPSRFFWQAYRAVLGREQVPETSPFDKPLLVWRLLRLLPDLLTQPEFAALARF 128 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQAWQA 166 L D+D RK +QL+ + ADLFDQY VYR DWLA W G V E L E Q WQ Sbjct: 129 LRQDTDLRKHYQLAERLADLFDQYQVYRADWLADWSEGRDVLTSHRRGVEPLPEEQRWQP 188 Query: 167 PLWKALVEYTHQLGQPRWHRANLYQRFIETLESA--TTCPPGLPSRVFICGISALPPVYL 224 LW+AL+ T + RA L++RF++ ++ + P GLPSRV + GIS+L L Sbjct: 189 LLWRALLADTGE-ALSGTSRAALHRRFLDEVDRRGDSERPAGLPSRVVVFGISSLSQQAL 247 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG 284 + L A+G+ ++ + NPC +YWG+I L + +++ E+ Sbjct: 248 ELLAAIGRWTQVFMCVHNPCEHYWGNIIADKDLLRAERARQQRKPGMPEVIAL------- 300 Query: 285 QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVDVTPDN 333 + +PLLA+WGK GRDYI LL + + ++ +D F D Sbjct: 301 -----EELHQHAHPLLAAWGKQGRDYIGLLDEYDQREQYESLLQPVISRIDLFNSNGEDC 355 Query: 334 LLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRL 393 LLH +Q DI +L A SRS DSS+ FH+ HSPQREVEVLHD+L Sbjct: 356 LLHQLQDDIRDLRPLAE--------SRSRWPAIDSDQDSSVRFHLAHSPQREVEVLHDQL 407 Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP---ADRYLPYAISDRRARQSHPV 450 LA DPTL P D+IVMV DI+SY+P IQAVFG RY+P++++DR ARQ++ V Sbjct: 408 LAAFAADPTLRPSDVIVMVPDINSYAPHIQAVFGLIDRQKDPRYIPFSVADRGARQNNLV 467 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 L A LL LP SR DVL LLDVP + RF I EE L L++W+ + +RWG+ Sbjct: 468 LAALEKLLHLPQSRVAVSDVLDLLDVPAVRQRFAIEEEQLPLLQRWIRAANVRWGLHARQ 527 Query: 511 VRELELP-ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLM 569 + L LP A Q++W FGL RMLLGYA+ A G W+ + P DE GL A L G LA LL Sbjct: 528 RQSLNLPDAPEQNSWFFGLRRMLLGYAV-GAGGAWRDIEPLDEIGGLDAALAGQLAWLLD 586 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL-IEQQWQAIIAEGLGAQY 628 +L+ + L Q +W R +L+ FF D + M L +++ Q + Sbjct: 587 RLDYSWQQLCQPATPVQWCERLRVLLSTFFAADDGEDGFMLLQLDEGLQNWLEACESVAL 646 Query: 629 GDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688 +PLS++R+ +Q ++Q F AG V TLMPMR+IPF+ VCLLGMNDG YPR Sbjct: 647 TQELPLSVVREHWLGLFEQTSLTQPFFAGAVTFATLMPMRAIPFRHVCLLGMNDGDYPRN 706 Query: 689 LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748 PL FDLM Q + GDRSRR+DDRYLFLEAL+SA+++LYIS++GRSI DNSER PSVLV Sbjct: 707 RVPLDFDLMGQDYRPGDRSRREDDRYLFLEALLSARERLYISWVGRSIHDNSERPPSVLV 766 Query: 749 QELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG-ERQSYAREWL 807 +L D++ + + V LT H PF P+ + G SYAREW Sbjct: 767 AQLRDHLSNGWRIV---------NGQDVLPALTVEHRLQPFSPEYFTAGSSLFSYAREWR 817 Query: 808 PAASQAGKAHSEFVQPLPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 A S+ L + + L L F PVR+FF++RL V F ED Sbjct: 818 AGLPSYDGASSQTAAASDAVLDDYVQDGVLTLRQLADFVRDPVRSFFRLRLNVWFEQEDP 877 Query: 863 EIPDTEPFILEGLSRYQINQQLLN--------ALVEQDDAERLFRRFRAAGDLPYGAFGE 914 D EPF ++ L +++ +L+ + + +R G+L G F Sbjct: 878 TSQDQEPFAIDALENWRLQHELIQVQKAALQRQIPREQALAEHLQRITRRGELAPGGFAT 937 Query: 915 IFWETQCQEMQQLADRVIACR--QPGQSMEIDLACNGVQITGWLPQVQPD---------- 962 + + + M L R R P + L+ + + WL +++ D Sbjct: 938 VLEQDLAEPMADLFTRYEQERDKWPTPIPDEPLSLPELPLEDWLNELRLDEQGNRCRLVL 997 Query: 963 ---GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHY 1019 GLL + + + W+ HL GG+ + K+G P L QA Y Sbjct: 998 ESGGLLHPTRRSYRLDKLLPFWVAHLAGHL-GGHALHSTLVSKNGTVHLPALEPAQAAAY 1056 Query: 1020 LSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNM 1079 L++ +REGM PL V ++G WL+ D + AR + + N Sbjct: 1057 WQSLMDAWREGMRCPLPVAVKTGFRWLEV---GGELGQSADGEAGKAARQCYEEHDPANR 1113 Query: 1080 MVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLFR 1118 + + R + + Q+ L PL Sbjct: 1114 KYAESASNPYLARAFPTFEHLWADGEFARWVQQLLAPLHH 1153 >UniRef50_C1DMH2 Exodeoxyribonuclease V, gamma subunit n=18 Tax=Gammaproteobacteria RepID=C1DMH2_AZOVD Length = 1168 Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats. Identities = 434/1179 (36%), Positives = 602/1179 (51%), Gaps = 93/1179 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAAN 59 L V H NRL+ L L + R L P E E++LVQS G+ QWL++ L+ + GIAA Sbjct: 11 LMVVHGNRLEALRELAVEWMRRHPLA-PLEDEVVLVQSNGIVQWLKLALAGRDGCGIAAA 69 Query: 60 IDFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 I LPA F+W + VL IP+ES +K ++W+LM LLP LLE E F LR +L D Sbjct: 70 IRVELPARFLWQSYRAVLGSAGIPRESPLDKAPLTWRLMRLLPNLLEGEAFAPLRRFLED 129 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL--------VEGLGEAQAWQAPLW 169 DSD RK QL+ + ADLFDQY VYR DWLA W GH L EA WQ LW Sbjct: 130 DSDLRKRHQLAERLADLFDQYQVYRADWLADWAEGHDRLRTSRDGARPLDEAARWQPALW 189 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 +AL+ + RA ++ RF+E L PPGLP RV + GIS+LP L+AL A Sbjct: 190 RALLADVGRDTV-ATSRAGVHLRFVERLRGLDAPPPGLPRRVMVFGISSLPAQALEALAA 248 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L + ++ L NPCRY+WGDI L + R++R + ++ Sbjct: 249 LARFSQVLLCVHNPCRYHWGDIVPDQDLLRHQYRRQRRK------------DGMAPGLSA 296 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVD---VTPDNLL 335 + +PLLA+WGK GRDYI LL + + +D F + P +LL Sbjct: 297 EDLHQHAHPLLAAWGKQGRDYINLLDRYDDPEHYRERFASLGGRIDLFDEEDGPRPGHLL 356 Query: 336 HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLA 395 +Q DIL L E +R + D S+ FH+ HS QREVE+LHD+LLA Sbjct: 357 GQLQDDILHLRTL--------EETRKEWPLVDPKADRSLRFHIAHSAQREVEILHDQLLA 408 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEA 453 DP L PR++IVMV D+++Y+P IQAVFG DRY+P++++D+ R P+ A Sbjct: 409 RFAADPGLRPREVIVMVPDVNAYAPHIQAVFGQYARDDDRYIPFSLADQGQRGCDPLPIA 468 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 LL LP+ R +VL LLDVP L ARF I E L LR+W+ +GIRWG+D + Sbjct: 469 VEQLLKLPEGRLTVSEVLDLLDVPALRARFAIEESDLPTLRRWIEGAGIRWGLDAERRAG 528 Query: 514 LELPA-TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 L LPA Q+TWRFGL RMLLGYA+ S + P+DE GL A L+G L LL L+ Sbjct: 529 LGLPAGLEQNTWRFGLRRMLLGYAVGSGAP-CAGIEPFDEIGGLEAVLIGPLVRLLEALD 587 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMT-LIEQQWQAIIAEGLGAQYGDA 631 R LA+ EW + + ML FFL +E + + + + + + G + Sbjct: 588 DLHRRLARPVAPAEWGRILQAMLGDFFLARSERDETLLGQLGEALEEWLELCAGVDLDEP 647 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 +PL ++R+ LD+ R+SQRFLAG VN CTLMPMR+IPF+VVCLLGMNDG YPR P Sbjct: 648 LPLGVVREAWLGLLDRGRLSQRFLAGAVNFCTLMPMRAIPFRVVCLLGMNDGDYPRSQTP 707 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 L FDLM+ + GDRSRR+DDRYL LEAL++A+++LY+S++GRS++DN ER SVLV +L Sbjct: 708 LDFDLMAGDYRPGDRSRREDDRYLLLEALLAAREQLYVSWVGRSVRDNCERPASVLVGQL 767 Query: 752 IDYIGQSHYLPG---DEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE-RQSYAREWL 807 D++ LP + + + + R+ A LT H PF + ++ + SYAREW Sbjct: 768 RDHLASGWRLPEEYHEASDSEADKAKRLLAALTTEHPLQPFSRRYFEGDDALFSYAREWA 827 Query: 808 PAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 + A + P PF + LETLQ F PV+ FF RL+V+ D Sbjct: 828 ALHRRDAPAGAARALP-PFEPDGALALETLQNFLRDPVKHFFTQRLKVHLDESMQAQLDE 886 Query: 868 EPFILEGLSRYQINQQLLNALVEQDDAE---------RLFRRFRAAGDLPYGAFGEIFWE 918 EPF L+GL +Q+ Q LL+A + + R + +G LP FGE E Sbjct: 887 EPFGLDGLQLHQLRQSLLDAASLALEDDPARVEAALEAAALRLQRSGRLPLAGFGERLRE 946 Query: 919 TQCQEMQQLADRVIA-CRQPGQSME----IDLACNGVQITGWLPQVQPD---GLLRWRPS 970 + + + R + C +E + GV++ GWL ++ + L R Sbjct: 947 QLLKPLPEQMRRYQSLCSLWSTRLESPKPLWFEHEGVELAGWLGGLRENAGGALARIELQ 1006 Query: 971 LLSVAQGMQLWLEHLVYC--------ASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQ 1022 + +G W H + A+ G + L + +D F P+ +A L Sbjct: 1007 PGELKRGKDDWKWHRLLRPWVAHVAAAACGAPLTSLLVGQDASLEFAPIEQARAQAILRL 1066 Query: 1023 LIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVR 1082 +E +R G+ APL V + AWL ++ + D A +AYEG Sbjct: 1067 WLEAWRAGLEAPLPVALNTAIAWL--------NSGEEGDEEGGTAEKAAREAYEGGYNRS 1118 Query: 1083 GEGD-DIWYQRLWRQLTPETME-AIVEQSQRFLLPLFRF 1119 GE R + + E S+ L Sbjct: 1119 GELAGSASLARQYPTFDDLIADRDFYEWSRDLYQSLLDH 1157 >UniRef50_A6VQ90 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VQ90_ACTSZ Length = 1113 Score = 969 bits (2504), Expect = 0.0, Method: Composition-based stats. Identities = 421/1157 (36%), Positives = 618/1157 (53%), Gaps = 103/1157 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 +YHSN LDV ++ ++++ R DPF+ E ILVQS GMAQWLQ+ +++ GIAAN+ Sbjct: 5 FFIYHSNDLDVQAGILISLLQQ-RSTDPFQSETILVQSPGMAQWLQLKIAEADGIAANLR 63 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS-- 119 FP+PASFIW + LP++ ++S F K++M+W LM LL L L Y D + Sbjct: 64 FPMPASFIWQQYADNLPDVSEQSPFGKEAMTWHLMALLAILP----LPRLNEYWRDHALG 119 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-----------------LVEGLGEAQ 162 ++ K +QL+ + ADLFDQYLVYRPDW+ WE G L+ + + Sbjct: 120 NQEKRYQLARQIADLFDQYLVYRPDWIDAWEKGDDRYIENQLRYALADNPVLLAQIKQDI 179 Query: 163 AWQAPLWKALVEYT--HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 WQ LW+ LV H P HR NL+ ++ TL + P LP R+F+ GISALP Sbjct: 180 RWQGQLWRELVAAVCRHTKDSPARHRVNLHLTYLNTLATG--RPKNLPPRIFVFGISALP 237 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 YL+ LQA+ +H ++HL F NP ++YWGD+ DP ++ +L + R DRE ++ Sbjct: 238 KAYLETLQAISRHSQVHLFFNNPSKHYWGDLADPRFIRELSLKTYREHGSDREANWLSET 297 Query: 281 ENAG------QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL 334 E + D +G+PLLA+WGKLGRD+ YLLSDL ++E A+ + +L Sbjct: 298 EKVRLKNGEFERSADDELLQIGHPLLATWGKLGRDFFYLLSDLN-AREFTAYTPLEGADL 356 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 L +++ IL L + + D S+ H CHSP REVEVLHD LL Sbjct: 357 LTQVKNRILNLVPDKQQPLQPPK------------ADRSVVLHACHSPMREVEVLHDYLL 404 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA------------PADRYLPYAISDR 442 + D TLTP+DI+VMVADID Y+P+IQAVFG P +RY+P++ISD Sbjct: 405 RQFQADETLTPKDIVVMVADIDRYTPYIQAVFGQYQRYTEDRIGKKRPDERYIPFSISDG 464 Query: 443 RARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGI 502 + ++ +L ++SLL L +S+F +E+VLA LDVP + +F+I L +R WV I Sbjct: 465 KLSENDVLLATYLSLLDLKNSQFSAEEVLAFLDVPAIREKFEIALSDLPQIRHWVARVEI 524 Query: 503 RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVG 562 R+G+D + + + W+ GL R+LLGYAM +QG WQ L +D+S GL ++VG Sbjct: 525 RFGLDKN----CDSAVKNYNAWQAGLERLLLGYAMRESQGIWQDSLGFDDSDGLKGQVVG 580 Query: 563 HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAE 622 +LA+ L +L W L Q +E+W +L FF+ D +T I +++ Sbjct: 581 NLAAFLDRLAQWHTFLQQSHSIEKWQQNLTALLTDFFVADEQTVDIQQYIRDAVRSVTEL 640 Query: 623 GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND 682 + + + ++ + + ++L+ S +FL G V+ CTL+PMRSIPF+VVCLLGMN+ Sbjct: 641 LRSMDFQEDISAEVMAEVMTEKLNDNPNSLKFLVGKVSFCTLLPMRSIPFRVVCLLGMNE 700 Query: 683 GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742 YPR+ P FDLM ++GDRSRRDDDRYLFLEAL++AQ++LYISY+GRSI DN R Sbjct: 701 NDYPRRRTPNSFDLMRYHRRKGDRSRRDDDRYLFLEALLAAQEQLYISYVGRSITDNQPR 760 Query: 743 FPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSY 802 PSV+V +L DYI N ++ R+ + H F PQN+ +R ++ Sbjct: 761 QPSVVVSQLQDYI----------NDNLADNALRLTEKV---HPMTIFSPQNFYGNDR-TF 806 Query: 803 AREWLPAASQAG-KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 A+EWLP++ + + V PL L + L+ L +F HPV+ FF+ +L V F+ +D Sbjct: 807 AKEWLPSSPAMPSGENKQAVLPLTEKLT-RIELDQLVKFVRHPVKYFFENQLGVYFQNDD 865 Query: 862 SEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC 921 IPDTE F L+GL Y+I L ++ R F R G LP G FG+++ Sbjct: 866 DLIPDTENFTLDGLDLYRIKDDFLTY--SDEELCRYFERLSVKGILPRGNFGKVYEAKVR 923 Query: 922 QEMQQLADRVI-ACRQPGQSMEIDLACNGVQITGWLPQVQPD----GLLRWRPSLLSVAQ 976 EM+ ++V Q Q+ I+L +GV+ITG L + D + WR LS Sbjct: 924 SEMETFREKVRDYLLQTPQTQAIELDIDGVKITGNLTALYGDSPDKRRIAWRVGNLSDGF 983 Query: 977 GMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 G++ W+ HL CA+G S L + +D +AAE+A L + Y M+ Sbjct: 984 GLENWVYHLAKCATGE-VTSSLMITRDKSVTLAAIAAERATAQLGVYVRAYLCAMNRIQC 1042 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 + A LK + + R A RG D +++RL Sbjct: 1043 IPTMKITALLKCR-------------SADELRRLLDNAARPTDYNRG---DPYWRRLLLN 1086 Query: 1097 LTPETMEAIVEQSQRFL 1113 L + ++ + Sbjct: 1087 LDDGELTDVLPTLTDWF 1103 >UniRef50_C0QI08 RecC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI08_DESAH Length = 1206 Score = 960 bits (2482), Expect = 0.0, Method: Composition-based stats. Identities = 392/1220 (32%), Positives = 582/1220 (47%), Gaps = 142/1220 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAAN 59 L + H+N L+ L + V L E E +VQS GMAQWL++ ++ GI+A Sbjct: 16 LSIIHANHLEDLRDVAVHWVRTHPL-GVLETEQFIVQSKGMAQWLKLAVAADDGCGISAG 74 Query: 60 IDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 I+ LP +++W + +L IP +S ++++ + W+ ++LP LL + F+ L +L + Sbjct: 75 IETQLPGTWVWTAYRAILGNDTIPTDSPYDRERLVWRFFSILPTLLTDDIFSPLNRFLEN 134 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQW--ETGHLVEG------LGEAQAWQAPLW 169 D+D+R+ +QL+ + ADLFDQY VYR DWL QW E L+ G + AWQA LW Sbjct: 135 DTDQRRQYQLACRLADLFDQYQVYRADWLKQWAGEKDQLLTGGGQWVDIPPQHAWQAELW 194 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + L R++L+Q F++ P LP RV + GIS+LP L+ L A Sbjct: 195 RRLRARV-PASLRNIGRSDLHQAFLQKASDTRVRPEILPPRVIVFGISSLPKQVLETLYA 253 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 + ++ L NPCR++W DI + L ++ + D Sbjct: 254 VSHLCQVLLFVNNPCRHFWADIIEDRELLRIDHARHSGKATMPTPLDPVDV--------- 304 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ-------ELDAFVDV----TPDNLLHNI 338 NPLLA+WGK GRDYI L+ ++ + E+D F DV T LLH I Sbjct: 305 ---YRHANPLLAAWGKQGRDYIGLVYGYDTPETYRKNFAEIDLFRDVIAQDTRGTLLHEI 361 Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 Q IL+LE A ++++RP+ D +ITF V HS QREVE+L D+LL E Sbjct: 362 QQAILDLEPSA---------PDNESRRPIARGDRTITFQVAHSRQREVEILQDQLLHSFE 412 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEAFIS 456 L PRD++VM DI+ Y+P I+AVFG+ R++P+ I+D ++S P+++A Sbjct: 413 TLDNLLPRDVVVMTPDIEGYAPHIEAVFGNLSLDDPRFIPFTIADHPGKKSVPLVKALER 472 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL LPD R + D++ LL+VP RF E L L QW+ +GI WG++ L Sbjct: 473 LLHLPDLRMAARDLMDLLEVPAFQRRFGFKETDLPRLFQWIKGAGISWGLNKSQRASFGL 532 Query: 517 PAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 P Q TW FGL RMLLGYA+ + + W ++ PYDE GL A LVG +A ++ +L Sbjct: 533 PPDLDQTTWAFGLNRMLLGYAVGNNKA-WHNIEPYDEIGGLEAHLVGLVAGVVERLEALW 591 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLP-DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 L E W + R + FF P DA + ++Q + A + L Sbjct: 592 TTLQSSACPERWCLILRTLARDFFEPVDASERLVLNRMDQVLDDWLNACTQADLDQELTL 651 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 ++RD +++ + +SQ+FLAG VN TLMPMR+IPFKVVCLLGMNDG +PR PL F Sbjct: 652 CVVRDYFLEKMAVQGVSQKFLAGMVNFGTLMPMRAIPFKVVCLLGMNDGAFPRSHPPLDF 711 Query: 695 DLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 DLM++ + GDRS R+DDRYLFLEAL+SA++ Y+S++GR ++DN ER PSVLV +L Sbjct: 712 DLMAEPGMYRPGDRSTREDDRYLFLEALLSARETFYLSHVGRDVRDNGERTPSVLVGQLR 771 Query: 753 DYIGQSHYL------PGDEALNCDESE----------------ARVKAHLTCLHTRMPFD 790 DYI L P C E E + + HLT +H PF Sbjct: 772 DYIDAGWTLEPGCAEPERPESECSEPERLGSECPESGQPNYEGSGLLDHLTTIHPLQPFG 831 Query: 791 PQNYQPGE--RQSYAREWLP-AASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRA 847 + E +YA+EW + + EF++ P + + L L F +PV+ Sbjct: 832 RAYFSSPEAPLFTYAQEWRNCLGRREDQPREEFLETPPCV--DALTLSPLIGFMKNPVKF 889 Query: 848 FFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF--------- 898 F+ L + F E D EPF L+ L+ + + LL+A + + L+ Sbjct: 890 FYNHCLSIRFDDISLENLDHEPFALDLLAPFNLGATLLSAGLAAGVSPELYPGRGGPCVV 949 Query: 899 --------RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV--IACRQP--GQSMEIDLA 946 R G+LP FG + + + + R +A R P MEI L Sbjct: 950 EAAVVEAADRLTRTGELPMAGFGTLAAKNLTAPVIAMLTRYGSLAERWPRACDPMEIALV 1009 Query: 947 CN-----GVQITGWLP--------------------QVQPDGLLRWRPSLLSVAQGMQLW 981 +++ WL Q P +L LL + + LW Sbjct: 1010 IEQDGWPEIRLDDWLDNMITTDFDDPGAILPQFARQQFYPRNILDKGGKLLLLYPLVPLW 1069 Query: 982 LEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPES 1041 + H+ CA G + S L D F PL A L ++ +R+G++ PL V ++ Sbjct: 1070 ISHVAGCAMGIDLTSHLI-APDAVAAFHPLDKAAAFSVLMDILTVFRQGLARPLPVTAKT 1128 Query: 1042 GGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGN-MMVRGE-GDDIWYQRLWRQLT- 1098 G A++ Q+A+ + Y G+ RGE G D + QR + Sbjct: 1129 GVAYVAALMAKDE----------QRAKNDAARVYAGDGFNARGELGYDPYLQRTFPDFDA 1178 Query: 1099 --PETMEAIVEQSQRFLLPL 1116 + + LP+ Sbjct: 1179 LWQARDNFFKDLAATLYLPM 1198 >UniRef50_B8FB93 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB93_DESAA Length = 1085 Score = 958 bits (2476), Expect = 0.0, Method: Composition-based stats. Identities = 337/1131 (29%), Positives = 553/1131 (48%), Gaps = 81/1131 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 LRVY SN L L + ++ ++ L P E E++L Q+ M +WL + L++ G AN+ Sbjct: 15 LRVYSSNSLQTLARQLADLLVKDPLP-PLEQEIVLTQNPVMGRWLYLELAKINGACANLR 73 Query: 62 FPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 LP +++ ++F V+P E ++S F+ +M+W++M L + +E FT ++ YL DD Sbjct: 74 VTLPNAYMHELFASVIPPMENEEQSPFSPWAMTWRIMDALARFMEEPPFTEIQRYLQDDP 133 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 D RK F LS + A +FD Y+++RP+ + W+ G WQA LW+ + + Sbjct: 134 DGRKQFGLSRRIAGVFDGYMLFRPEMILNWDHGKGG-------HWQAILWREISQ----- 181 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 G HR L F + L S + P LP R+ + G+ +PP +L +G+ + ++L Sbjct: 182 GFNDRHRPGLRTDFFKALRSGKSRPGVLPKRISLFGVWGMPPFHLDVFSGVGRMLPVYLF 241 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 NPC+ YW + ++ TR + + + GN L Sbjct: 242 HVNPCKEYWAHAFSDKQITRITTR-------------------SPFTRPEELYLEKGNAL 282 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 LAS G +GRD++ L++ L+ + + + LL IQ +ILE + E+ Sbjct: 283 LASLGGVGRDFLGLVAGLDCHPQ-ELYESPDRTALLGMIQGEILEFKE--------EDGR 333 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 ++ K P D S+ H CHSP RE+EVL+D +L L+EDP L P+DI+VM D+D ++ Sbjct: 334 KTQEKARPLPGDRSLAIHNCHSPMREMEVLYDHILKFLDEDPDLDPQDIMVMAPDMDKFA 393 Query: 420 PFIQAVFGSA-PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 P+++AVF S P LPY I+ + R P + AF+ + L SRF + VL L +P Sbjct: 394 PYVEAVFASPGPGGIRLPYCIAHKEVRTVSPSVNAFLEIFDLCQSRFEAAAVLDLAGLPA 453 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 +A +F +E+ L L +W+ ++ +RWG + D+ + L LPATG +TW GL R++LGYAM Sbjct: 454 VAEKFGFSEQDLETLARWIAQTRVRWGANADSRKALGLPATGDNTWESGLDRLMLGYAMA 513 Query: 539 SAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 E+ Q++ P+ + + A L+G A L R L + ++EW+ + ++ Sbjct: 514 GLDEEFFQNISPFGDLAMEDAPLLGRFAEFTEALFQLSRKLEKSHEIQEWVKILEGVVQE 573 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F PDAE + + + +E YG V ++++ +A L+Q S L Sbjct: 574 FLSPDAEDLHLLQIALSKTAKAQSEQ---GYGREVAAAVVKAAVAGLLEQSSPSGSILRR 630 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 VN C++ IP KV+CL+GM+DG +PRQ +GFD M++ P+RGDRS R DDR+ FL Sbjct: 631 GVNFCSIAQGAGIPAKVICLVGMDDGAFPRQDGGMGFDYMARSPRRGDRSPRGDDRFSFL 690 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 +A+I+AQ +L+IS+ G+ IQDN+ PS LV ELIDY+ L Sbjct: 691 QAIINAQSRLHISFTGQGIQDNAALCPSPLVSELIDYVEAGFDLSDS------------- 737 Query: 778 AHLTCLHTRMPFDPQNYQP--GERQSYAREWLPAA----SQAGKAHSEFVQPL--PFTLP 829 L +H PF P + S++R++ AA ++ F QPL P Sbjct: 738 GPLVVVHKLQPFSPDYFSGQCPGLFSFSRQYSQAADILQRGEKQSRQFFSQPLEEPEAQD 797 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 +++ LE L F+ P ++ + R+ V + E F L GL R+ + +++ V Sbjct: 798 KSISLEALCAFFRMPPKSILRDRVGVFLDAYTEAMDSAEAFSLGGLERHVLAGKMVEKRV 857 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDLACN 948 + + L+ +A G+LP+G G + ++ A + A + Q ++ D+ Sbjct: 858 QGRSSLDLYALAKAQGELPHGNVGAFAFNQLENQISPFARKAEAMLSEANQRLDADVMAG 917 Query: 949 GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGE-SRLFLRKDGEWR 1007 +I G L + P GL+ +R + + W+ HL CA E LF D + Sbjct: 918 EWKIHGRLSPLGPWGLILYRTASAKAYDRLNAWIRHLFLCAVRPGFENKSLFAGTDAVYY 977 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 + + A+ L+ L E Y +GM P PE+ A+ ++ + D ++ A Sbjct: 978 YDNVKQNAAVTRLAALAEVYDKGMEFPAPFFPETSFAYAQSMFKTD-----DVGQAMKAA 1032 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 R K+ + G RGE D + + L P + + P+ Sbjct: 1033 RNKWGPDFYG----RGEALDSYAALCFEGLDP-LSREFRDLAVEVYAPMLE 1078 >UniRef50_Q2SQD5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD5_HAHCH Length = 1073 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 357/1137 (31%), Positives = 571/1137 (50%), Gaps = 87/1137 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y+SNR + L AL+ + R +P + ++++VQS GM++WL L++ G+AAN+ Sbjct: 1 MLKIYYSNRQEQLLALLADALAR-PKANPLQSDILIVQSQGMSRWLSQQLAEINGVAANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +F LPA IW + ++P+ F+K ++W+LM L P L + +F L YL D Sbjct: 60 EFQLPAQLIWRLARLCRDDLPELHPFDKSILTWRLMQLAPGLPDSGEFDALHRYLHTGPD 119 Query: 121 KR-----KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEY 175 ++ + +QLS + AD+FD YL+YRPDWL++WE G E AWQ LW+ L Sbjct: 120 RKSPDLLRNYQLSQRIADVFDHYLMYRPDWLSEWEQGLPTEAGASEHAWQIELWRGLTHD 179 Query: 176 THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 + HRA + Q L LP R+F+ G+ + P YL LQ +HIE Sbjct: 180 SDAP-----HRARVLQELAAQLPQHVD---KLPPRLFVFGVPYMAPAYLDVLQNAARHIE 231 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 +H+ NP +YWGDI ++++ TR G D Sbjct: 232 VHMYQWNPTEHYWGDIASRKDISRIRTR---------------------DGAEVSGLYDE 270 Query: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV-TPDNLLHNIQSDILELENRAVAGVN 354 G+ LLASWGK RDY+ +L D+ S E D +V P LL +Q+D+ L Sbjct: 271 GHRLLASWGKPLRDYLDVLQDV-SVTEADCYVPPAPPQTLLQRLQADVFNLRQEPWPESP 329 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 D S+ H+CHS REVE L+D+L+ +L+ D +L+PRDI+VM D Sbjct: 330 --------------ADDRSLQVHLCHSALREVEALYDQLMDLLQTDHSLSPRDIVVMTPD 375 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 I+ Y+P ++AVFG+ R +P++++D ++++ + L L RF + +VL LL Sbjct: 376 IEQYAPLVEAVFGAQQGARRIPWSLADLSRYSDFNLVQSVLQLFDLLPGRFTASEVLGLL 435 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 ++P + RF + EE L LRQW++E+ IRWG+D ++ + + Q +W+ G+ R+LLG Sbjct: 436 EIPAVGRRFGLDEELLSRLRQWLHEASIRWGLDAESQQAYGVDCADQFSWKAGIKRLLLG 495 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 +A+ A +Q V PY G A+ +G L+ L+ L WR +++ + ++W + Sbjct: 496 FALPDAMQMYQDVAPYPHIQGGDADSLGALSQLIDTLARWRAQISRGQTPQQWADLLHSW 555 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 +N F PD + E A+ + + Q + E A + +PL++++ +L +RLD Q F Sbjct: 556 MNDLFDPDRDEEQALQVAREAVQEWLQETQTAGFDQPLPLAVVKQDLRRRLDSPLRRQSF 615 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L G V C ++PMRSIPF+VV +LG+N +PR GFDL+++ P++GDR+RR++DR+ Sbjct: 616 LTGAVTFCAMVPMRSIPFRVVAVLGLNHDQFPRHQTQPGFDLIAEYPRKGDRARREEDRF 675 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEAL++A+ Y+SY+GRSI+DNSE PSV++ EL+D I ++ Sbjct: 676 LFLEALLAARDVFYLSYVGRSIRDNSECAPSVILSELLDTIQ-------------EQGGE 722 Query: 775 RVKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAASQAG---------KAHSEFVQPL 824 + H PF P + G SY EWLPA + Sbjct: 723 AAIRRILREHPLQPFSPHYFTADGGHFSYQSEWLPALHGRHSKQEYQAFCPESLPPRERE 782 Query: 825 PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL 884 PF+ V L++L+RF +P R F Q RL + D D EPF L GL +Q+ + Sbjct: 783 PFSTDHPVELDSLRRFLRNPTRYFVQQRLNILLDASDLA-QDREPFDLAGLHGFQVKELW 841 Query: 885 LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEID 944 L L+ E A G LP GA G I + Q+++ L ++ +EI Sbjct: 842 LQELMNAATDEEAESYLEAKGLLPGGAVGAISRKQTRQQLEALREQARELY-GKDRIEIT 900 Query: 945 LACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR--LFLRK 1002 +G+ + G + + P GLL + S ++ + LWLEHL C + +R + + Sbjct: 901 PEKSGLPLRGAVAGIGPRGLLHLTTAGCSASRMLLLWLEHLALCGVTADALARPSFLVCR 960 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 G + P+A QA L++L++ + + P+ P++ +++T + ++ + Sbjct: 961 QGVGHYRPVAQNQARQLLAELMDLLTQSENEPVRFFPKTSLKYVETKNNPRSRSEPI--- 1017 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 L + GN GE D + +WR E V ++ P Sbjct: 1018 ------NAALNCWLGNEWQPGELADAHHFLVWRFEAETLNERFVALAESIWEPALEH 1068 >UniRef50_A4VRQ6 Exodeoxyribonuclease V gamma chain n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VRQ6_PSEU5 Length = 1092 Score = 956 bits (2471), Expect = 0.0, Method: Composition-based stats. Identities = 384/1138 (33%), Positives = 568/1138 (49%), Gaps = 84/1138 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +YH+ L+ L L ++ + L DPF P ++V S GM +WL + L+++ GIA + Sbjct: 1 MLSLYHAPDLETLGELATTLLAQ-PLADPFAPARVVVPSQGMGRWLTLELARRQGIAMQL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 + LPA+F+WD+ VL +P++SAF+ +++W+L L + E L YL D D Sbjct: 60 ELQLPAAFVWDLSRTVLGSLPEQSAFSPTTLTWRLYGWLCEPANLELAPRLAQYL-DGGD 118 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 +R+ L++K AD+FDQYL+YR DWLA WE G ++ LG +AWQA LW+ L + H Sbjct: 119 ERRRLSLAAKIADVFDQYLLYRDDWLAAWERGETLD-LGPDEAWQALLWRELTKDGHP-- 175 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HRA L ++ L P LP R+ + GIS+LPP +L+ L L +HI++ + Sbjct: 176 ----HRARLLGDLLQRLYR-DEPLPDLPERLLVFGISSLPPHHLRVLDGLARHIDVVVCA 230 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NP R WG+I+D LA+ + D DVG+PLL Sbjct: 231 LNPSREAWGEIRDIRELARQP-----------------------ESGVDDWYLDVGHPLL 267 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAF------VDVTPDNLLHNIQSDILELENRAVAGVN 354 AS GK GRD+ L L +S+ F D+ D+LLH +Q+DIL L R Sbjct: 268 ASLGKQGRDFFDSLFSLTASEGSQEFGLYSEDEDLHDDSLLHALQNDILRLRTRL----- 322 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 D + L D S+ H+ HSP REVE+LHD+LLA DP LTP ++V+ D Sbjct: 323 ------PDERISLAENDRSLEVHIAHSPLREVEILHDQLLARFAADPALTPDQVVVLTPD 376 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 I+ Y+PFI+AVF +PY+++DR R P++EAF+ LL L SRF +E++LA L Sbjct: 377 IERYAPFIEAVFAPREGSPRIPYSLADRSLRAEVPLIEAFLELLLLAQSRFAAEEILAWL 436 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 + P +A R I E L LR W+ E+G+RWG D + L LPA TWR GL R+LLG Sbjct: 437 EQPAIARRAGIESEDLPLLRDWLREAGVRWGRDGEQRARLGLPAEPAFTWRQGLDRLLLG 496 Query: 535 YAME-----SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 +A P D G +L+G L + +L LA+ RPL EW Sbjct: 497 FAAPPQLAGDRAPLLGEHWPLDALEGARGQLLGRLVGFVERLGSLADQLARPRPLAEWAD 556 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 + +++ F + E + L+ Q A+ + A + L L+ +L+ L Q Sbjct: 557 DLQVLIDTLFD-EREAGETLLLLSQACAALRDQAQAADLTRPIELELVHQQLSAALQQGG 615 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR 709 + FL G V CT++PMRS+PF+VVCLLG++DG +PR+ P GFDL+ + P+RGDR+RR Sbjct: 616 GASGFLTGAVTFCTMVPMRSLPFRVVCLLGLDDGAFPRRTPPSGFDLIGRHPRRGDRARR 675 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 DDRYL LE L+SA+Q LY+SY+GR +DN+ PSVL+ E+++ + + L Sbjct: 676 LDDRYLLLETLLSARQALYLSYVGRDPRDNAVLPPSVLLSEVLEAVDMTAVLA------- 728 Query: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 + V + H PF P+N+ Y+ W AA + + QP L Sbjct: 729 -DGARPVSQKILIAHPLQPFSPRNFGEAPCAGYSLPWFRAAQRLAEPPQAQAQPFASLLA 787 Query: 830 E------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQ 883 E T+ L + + HP R + RL + + + EPF LE + + + Sbjct: 788 EPDEAWLTIEPSQLLQCFRHPARFLLEQRLGLRLADDQESLASDEPFDLEMPAWNGLRRL 847 Query: 884 LLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSM 941 L A+ ++ E R AAG LP G G+ W ++ A R+ R + + Sbjct: 848 SLQAMEQRWSDEEERRMACAAGWLPTGELGQALWGKLRGPVRAFAPRLFELRPDAVPEPL 907 Query: 942 EIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV--YCASGGNGESRLF 999 +D+ GV++ GWL V P GL W+ L WL HL+ CA+ G L Sbjct: 908 PVDINLAGVRVHGWLDGVTPGGLFGWKLGRLGEWDLPPFWLRHLLLNLCATPGIERHSLM 967 Query: 1000 LRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLD 1059 L G+W+ PLA A L + YR + PL +LP S A+ + + Sbjct: 968 LSPAGDWQLGPLA--NAAELLEPWLVAYRSAIREPLPLLPRSSQAFARGYRKPSRGS--- 1022 Query: 1060 DDSTLQKARTKFLQAYEGNMM--VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLP 1115 L AR + +A+ G + E +D W +R P E +++ + P Sbjct: 1023 --EPLDCARKRAREAWFGAEFSPIAAEAEDPWNALAFRDSDP-LDERFETLAEQLIGP 1077 >UniRef50_C5S7Q0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7Q0_CHRVI Length = 1200 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 400/1195 (33%), Positives = 576/1195 (48%), Gaps = 141/1195 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------- 53 + NRL+ L L+ + R L P E E ILVQS G+AQWL++ L+ Sbjct: 16 FMLIQGNRLEELRGLLVAWMHRHPLA-PLENETILVQSNGIAQWLKLALAATPTSDDRDA 74 Query: 54 ----FGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLER---- 105 GIAA +D LPA FIW ++ VL ++P+ S F+K ++W+L LL +L Sbjct: 75 ITGGQGIAAALDVMLPARFIWRVYRAVLGDLPETSPFDKAPLTWRLYRLLERLTGVAPLQ 134 Query: 106 ------EDFTLLRHYLTDDSDK---RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV- 155 + LR +L D + R+ +QL+ + ADLFDQY VYR DWL W G V Sbjct: 135 SSDTRFDALDPLRGFLAVDGQEAAPRRRYQLAERLADLFDQYQVYRADWLEAWSQGRDVL 194 Query: 156 -------EGLGEAQAWQAPLWKALVEYT----HQLGQPRWH--RANLYQRFIETLESATT 202 + Q WQ LW+AL P H RA +++ F+E + Sbjct: 195 IRPNGERRSIPVGQDWQPVLWRALQADVDAEHGPDDPPLRHASRAEVHRVFLERTRAGQD 254 Query: 203 CPP---------GLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKD 253 P LP RV + G+S+LP L+AL+A+ ++ L NPCR+YWGDI + Sbjct: 255 ADPTRIAALRSVELPRRVIVFGLSSLPRQMLEALEAIAPVCQVMLFVLNPCRHYWGDIIE 314 Query: 254 PAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYL 313 L + R++ + + + G+PLLA+WGK GRDYI L Sbjct: 315 GRDLFRHPYRRQT-------------ARKVPENLDESRLHLNGHPLLAAWGKQGRDYIRL 361 Query: 314 LSDLES--------------SQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 L + + Q +D F +LLH +Q DILEL Sbjct: 362 LDEQDERRRYEAYFQGLTARDQGIDLFASPGTGSLLHQLQDDILELRPL---------HE 412 Query: 360 RSDNKRPLDP-LDSSITFHVCHSPQREVEVLHDRLLAMLEE----DPTLTPRDIIVMVAD 414 R D + +DP D S+ F V HSPQRE+E+LHDRLL E D L PR+++VMV D Sbjct: 413 RQDQRTVIDPEHDRSLEFIVAHSPQREIEILHDRLLDAFERSARTDRPLQPREVLVMVPD 472 Query: 415 IDSYSPFIQAVFG--SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 I ++P IQAVFG R +P+ I+D+ R +P++ LL+LP +RF ++L Sbjct: 473 IAVHAPHIQAVFGRFDPDDRRAIPFQITDQGQRHRNPLVIGLEHLLNLPRARFAVSELLD 532 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA-TGQHTWRFGLTRM 531 LLD+P L RF + E L LR W+ + +RWG+D L LP Q+TWRFGL R+ Sbjct: 533 LLDIPALRTRFSLDEPDLPRLRLWIAGANVRWGLDAAQRASLGLPEGLEQNTWRFGLRRL 592 Query: 532 LLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVC 591 LLG+A A G W+ + P+DE GL A L+G LA LL +L + + L + R W + Sbjct: 593 LLGFASGDA-GPWRDIEPHDEVGGLEAALLGPLAQLLERLEAYWQCLTEPRTPAGWSALI 651 Query: 592 RDMLNAFFLPDAETE-AAMTLIEQQWQAIIAEGLGAQYG-DAVPLSLLRDELAQRLDQER 649 +L+ FF+ +E++ + I + A A+ + G + + L ++RD L RLD+ Sbjct: 652 SALLDDFFMETSESDGVTLARILLELDAWEADCVQGGLGAEPIALEIVRDSLLARLDRPS 711 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR 709 ++QRFL G VN TLMPMR+IPF+ + LLGMNDG YPR+ P FDLM+ + GDRSRR Sbjct: 712 LTQRFLGGAVNFATLMPMRAIPFRQIWLLGMNDGDYPRRRVPADFDLMAGDYRPGDRSRR 771 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 +DDRYLFLEAL+SA++KL I ++GR I+DNSER PSVLV +L D++ P Sbjct: 772 EDDRYLFLEALLSAREKLVIGWVGRGIRDNSERPPSVLVGQLRDHLAAGWRRP------- 824 Query: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGE---RQSYAREWLPAASQAGKAHSEFVQPLPF 826 D AR+ A LT +H PF ++PG +YAREW AG + P+ Sbjct: 825 DGDGARLLAALTSVHPLQPFGRGYFEPGRAKTLFTYAREWRAVHDGAGTTEVSAERLAPW 884 Query: 827 TLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN 886 V L+ LQ F P+ A F RL++ E PD E F L+GL +QI +L++ Sbjct: 885 LPETPVDLDQLQGFLRDPIMALFDQRLRIKAPGEVVAPPDVETFALDGLGDWQIKDELIS 944 Query: 887 ALVE--------QDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG 938 E + + RF+A G LP G+ GE T + L A Sbjct: 945 RTFEPGLDRPALEQRLQAGIARFQAQGRLPDGSLGERLGRTVIAYLPVLHAAWDAALSEW 1004 Query: 939 QS---------MEIDLACNGVQITGWLPQVQP-----DGLLRWRPSLLSVAQG-----MQ 979 +E+++ + + L ++ ++ L ++ Sbjct: 1005 PRRLDRPIPVMVEVNVPAGRLVLEDVLSDLREGDDGRGQIILQTSGLTKDKHYQWRNTLR 1064 Query: 980 LWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLP 1039 W+ HL G +RL G+ R P+ ++A L L+ + EGM PL V Sbjct: 1065 AWVRHLAAQLDGEPVTTRLL-TPSGDARLEPVPVDEARERLEALLVVWWEGMQRPLPVAL 1123 Query: 1040 ESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 +G AWL D KA LQA++ + + + R + Sbjct: 1124 NAGMAWLDK--DGPETLEDGTAPEELKAWNAALQAFDLDHT-----YNAYVGRCY 1171 >UniRef50_A3JIN1 Exodeoxyribonuclease V gamma chain n=2 Tax=cellular organisms RepID=A3JIN1_9ALTE Length = 1224 Score = 954 bits (2465), Expect = 0.0, Method: Composition-based stats. Identities = 390/1185 (32%), Positives = 569/1185 (48%), Gaps = 134/1185 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------- 53 H+N L+ L + FI ++ L P + E LVQS G+AQWL++ L++K Sbjct: 19 FHAIHANHLEDLRRAVVFICQQNPLP-PLQSETFLVQSNGIAQWLKLALAEKRSENGSEG 77 Query: 54 -FGIAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQL-LEREDFT 109 GIAA +DF PA FIW + VLP+ +P++S F+K+ + W+L LLP+L L E F Sbjct: 78 GLGIAAGMDFLFPARFIWQAYRAVLPDGDVPEQSPFDKRRLVWRLYRLLPELVLTDEAFN 137 Query: 110 LLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEA 161 L +L + FQL+ K ADLFDQY V+R DWLA WE G V + + + Sbjct: 138 PLARFLDGSDTDLRAFQLAEKVADLFDQYQVFRADWLAAWEQGRDVVISTRNGEKPIEQD 197 Query: 162 QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTC--PPGLPSRVFICGISAL 219 WQ LW+ LVE T + R+ ++ RF++ + P LP R+ + G+S+L Sbjct: 198 TRWQPMLWRKLVEDTG--AEAHTSRSQIHTRFMKQGQQVAAPSHPSRLPKRIVVFGVSSL 255 Query: 220 PPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD 279 P L+AL L + ++ L NP ++YW DI L K ++ Sbjct: 256 PRQALEALYVLSRFSQVVLCVHNPSQFYWADIVSDRELLKAERKRGASH----------- 304 Query: 280 SENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVD 328 Q+ ++D NPLLA+WGK GRDYI LL + ++ E +D F + Sbjct: 305 -PTLSQIDDADQLHQHANPLLAAWGKQGRDYIRLLDEFDNPDEYRNSFQTPDQKIDIFSE 363 Query: 329 ---VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRP------------------- 366 LLH +Q+DI L + S Sbjct: 364 HGAGQTTCLLHQLQNDIYNLTPLQEIRDEQRKLDLSQGHPLTAEGSLSAEGSLSAEGSLP 423 Query: 367 ---------LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 D S+ FH HSPQREVE+LHD+LLA D TL PRDI+VMV DI+ Sbjct: 424 AEGSLSSEGFPKADGSVAFHNAHSPQREVEILHDQLLAAFNADDTLRPRDIMVMVPDINV 483 Query: 418 YSPFIQAVFGSAPA--DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Y+P IQAVFG A R++P+ ISD+ R PVL A +L+SLP RF ++++LL+ Sbjct: 484 YAPHIQAVFGRYTAGRKRHIPFTISDQGQRNHEPVLIALETLMSLPRHRFGVSEIISLLE 543 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT-GQHTWRFGLTRMLLG 534 VP + RF+I EE + R+WV + IRWG+ + LELPA ++TW+ GL MLLG Sbjct: 544 VPGIRDRFEIAEEEIPLARRWVEGANIRWGLHGAHRESLELPADLDRNTWQSGLRSMLLG 603 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 Y M W V PY E GL A L G L + +L + L R +EW + M Sbjct: 604 YGMGD-DEPWAGVQPYGEIGGLQASLAGRLGDFVYRLEKVWQDLQASRTPQEWEALFAAM 662 Query: 595 LNAFF-LPDAETEAAMTLIEQQWQAIIAEGLGAQYG-DAVPLSLLRDELAQRLDQERISQ 652 L FF + + +Q + + + L A +PL++++D L LD+ ++Q Sbjct: 663 LEQFFHKVEGHDLLLLNRFRRQLEQWLDDTLAAGLEHQLLPLNIVKDVLLDGLDEGGLNQ 722 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 RFLAG VN TLMPMR+IPF+ VCLLGMNDG YPR P+ FDLM+Q + GDRSRR+DD Sbjct: 723 RFLAGKVNFATLMPMRAIPFRTVCLLGMNDGDYPRSRPPVDFDLMAQDYRPGDRSRREDD 782 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEA++SA+++LYIS++GRSI+D+S R PSVLV +L D++ LPG + Sbjct: 783 RYLFLEAMLSAREQLYISWVGRSIRDDSPRPPSVLVGQLQDHLNGLWQLPG-------QP 835 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPG----ERQSYAREWLPAASQAGKAHSEFVQPLPFTL 828 + V LT H PF + +Y EW A + L + Sbjct: 836 DVAVTDALTTCHPLQPFSRDYFPQSRHARSLFTYEHEWRRAHGTVSTDAQH--KALAYQQ 893 Query: 829 PET-VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 PE V L L F P+ F+Q RLQV F + + DTE F L GL R++++ +L+ Sbjct: 894 PEEPVTLNDLSGFLKKPIDTFYQRRLQVRFEDVEDDDTDTENFDLNGLDRWRLDTELIEQ 953 Query: 888 -LVEQDDAERLFRRF-------RAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-- 937 L++ E L R GDL G + L +R + Sbjct: 954 GLLKASSEEDLEHRLETTLDCMARRGDLGMGTTEHRLRNELSGRLPNLFERYQSALAEWP 1013 Query: 938 ---GQSMEIDLACNG-------VQITGWLPQVQPDGLLRWRPS------------LLSVA 975 G+ + + + + L + + R + + A Sbjct: 1014 EEVGEPLAFEYRLANSTGSVEVLDLIDHLRRNHEGNICRLVIAGSSLLTGSGNTKKIRYA 1073 Query: 976 QGMQLWLEHLVYCASGGNGESRLFLRKDGE-WRFPPLAAEQALHYLSQLIEGYREGMSAP 1034 M+ W+ HL + E+ + +++ RF PLA E A +L ++ + + + Sbjct: 1074 NLMRDWVIHLAGQIAAQPFETLILGKEEKRNVRFAPLAKETASKHLDAILARWMDANTRA 1133 Query: 1035 LLVLPESGGAWLKTCYDAQNDAMLDDDS--TLQKARTKFLQAYEG 1077 L V E+G AW+ + Y ++ + + ++A T L+ G Sbjct: 1134 LPVHCEAGFAWIYSFYQSKKFLGEHEHAISDAEQAYTLALERDTG 1178 >UniRef50_B9CWC7 Exodeoxyribonuclease V gamma chain n=2 Tax=Actinobacillus minor RepID=B9CWC7_9PAST Length = 1085 Score = 953 bits (2463), Expect = 0.0, Method: Composition-based stats. Identities = 375/1058 (35%), Positives = 555/1058 (52%), Gaps = 88/1058 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VY+SN+L L ++ + +DPF+PE ILVQS GMAQWLQM +++ G+A N Sbjct: 1 MFTVYYSNQLTALAEMLIHHQKVNPNEDPFQPETILVQSVGMAQWLQMQIAESMGVAGNY 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD-- 118 +FP P SF+W + + P +PKE+ F + M+W+LM ++P +LER +F LR YLT D Sbjct: 61 EFPFPTSFLWQQYRLLFPHLPKENIFERGVMAWRLMRIIPAVLERPEFQGLRAYLTHDKE 120 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH----------------LVEGLGEAQ 162 D KL+QL++K ADLFDQYLVYRP WL WE G L G+ E Sbjct: 121 QDSLKLYQLATKIADLFDQYLVYRPHWLVHWENGQWQEVVREIQIQPFSTNLQTGIQENV 180 Query: 163 AWQAPLWKALVEYTH----QLGQPRWHRANLYQRFIETLESATTCP-PGLPSRVFICGIS 217 WQ+ LW L+E T +L HRA L Q+F E LE T LP R+F+ GIS Sbjct: 181 HWQSLLWNLLIEDTRKDYDELLFTTSHRAYLQQKFFEKLEDLTEEEYKKLPKRIFVFGIS 240 Query: 218 ALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLF 277 +LP L L ++ ++HL F NP + YWGD + A L K+ +Q+ E ++L Sbjct: 241 SLPTTQFATLLKLSEYCDVHLFFLNPSQMYWGDSIENAALEKMALKQQLSETEIQQLL-- 298 Query: 278 RDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHN 337 GN LL+ WGK GRD+ L++ S + ++ F + ++ L Sbjct: 299 ---------------AQQGNQLLSMWGKQGRDFFDQLAEY-SPEPIELFFENDQESNLSR 342 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 ++ IL +N + + D+SI H CHS REVEVL ++LL + Sbjct: 343 LKQAILNNDNPSYLEL---------------ENDNSIQIHNCHSAMREVEVLQNQLLRLF 387 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEAFI 455 E++P L+P+DIIVM ADI+ Y+P+I AVF +RY+P+ ISD++ Q PV+ +F+ Sbjct: 388 EQNPHLSPKDIIVMAADIEQYAPYINAVFSRYGREDNRYIPFTISDQKISQVDPVISSFL 447 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE 515 +L L DS F +E +L LL+V + +F E L LR W+ ESGIR + + + Sbjct: 448 VMLKLRDSTFSAEALLDLLEVEAIGQQFGFNREDLTCLRHWIKESGIRSTLTIEQENGWQ 507 Query: 516 LPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 ++W GL R+LLG ++ G WQ+ + ++ES GL AE VG LA + +L W Sbjct: 508 ----NYNSWENGLDRLLLGSCLKEENGIWQNTIAFNESYGLSAERVGKLAEFIEKLTAWS 563 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 + P+ W D++ A + + + A+ LI+Q+ +A+ A L A++ + V Sbjct: 564 VLSLESHPISTWKQALEDLVKAVYQENDASNDALFLIQQELEALEALVLQAKFDEPVAFE 623 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 ++ L RL+ + F+ G VN CTL+PMR+IPFKVVCLLGMN+ +PRQ FD Sbjct: 624 VIERALQDRLNSQSHVMHFMTGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQPVINSFD 683 Query: 696 LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI 755 LM P++GDR+RR+DDRYLFLEAL+SA++ YISY+G+S+ + ER PSVLV + +DY+ Sbjct: 684 LMQYHPRKGDRARREDDRYLFLEALLSAEEVFYISYVGKSLVKDEEREPSVLVSQFVDYL 743 Query: 756 GQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGK 815 + + L L H F +N++ G SY +EWL A QA + Sbjct: 744 AKYYSLS-----------------LEQEHPMNAFSERNFKSG-YVSYHKEWLEFAQQAVE 785 Query: 816 AHSEFVQPLPFT--LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 +H F + LP LP+ + L+ L F P + FF L + FR ED EI DTE F L Sbjct: 786 SHDFFAKSLPENSELPKEIELDELIAFIQSPTKQFFTRNLGIYFREEDDEIEDTEHFSLS 845 Query: 874 GLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL-ADRVI 932 L YQ+ QLL E F + G++P FG++ +Q + + Sbjct: 846 KLDEYQLTAQLLTTSSEMTSP--FFEKETLKGNIPVLNFGKLTQTELTNRIQDMRVELAE 903 Query: 933 ACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGG 992 + + L C V++ G LP + ++ WR L ++LW+ L+ Sbjct: 904 YLKGESDILPFSLQCTQVELVGNLPNLFGQEIVLWRVGKLRDKDTIKLWIYFLILTLLEK 963 Query: 993 NGESRLF-LRKDG--EWRFPPLAAEQALHYLSQLIEGY 1027 +++ L D + F + QA L I+ + Sbjct: 964 PFALKMYTLEGDKLTCFTFNTIEVSQAKEILEIYIKAF 1001 >UniRef50_B0BTG3 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Pasteurellaceae RepID=B0BTG3_ACTPJ Length = 1114 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 387/1156 (33%), Positives = 600/1156 (51%), Gaps = 92/1156 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M V+ S +L L AL+ + + + +PFEPE +LVQS GMAQWLQM ++ + G+AA+ Sbjct: 1 MFTVFFSQKLSSLAALLIRLQQNDPNPNPFEPETVLVQSVGMAQWLQMQIADQTGVAAHY 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FP P SF+W + + PE+PKE+ F ++S++W+LM L+P+ LE+ +F L YL D+ Sbjct: 61 QFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEKAEFESLNLYLNKDAR 120 Query: 121 K--RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE-----------------A 161 + KL+QL+ K ADLFDQYLVYRP WL WE+ + L E Sbjct: 121 QYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNERDILAN 180 Query: 162 QAWQAPLWKALVEYTHQLGQPRW----HRANLYQRFIETLESATTC-PPGLPSRVFICGI 216 WQ+ LW AL+E HRA L Q++ E L++ T LP R+F+ GI Sbjct: 181 LRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPKRIFVFGI 240 Query: 217 SALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL 276 S+LP L L+ L +H E++L F +P + YW + + L KL +++ + L Sbjct: 241 SSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQDLDALL- 299 Query: 277 FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLH 336 + GN LLA WGK GR+++ L + E ++ F + D+ L Sbjct: 300 ----------------AEQGNQLLAMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLI 343 Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 +++ IL N G L D SI H CHS REVEVLH++LL M Sbjct: 344 KLKNAILNFNNEQRFG--------------LAEQDRSIQIHACHSVMREVEVLHNQLLQM 389 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPVLEAF 454 E +PTL P+DIIVM ADID Y+P+I AVF RY+P+ +SD++ P++ +F Sbjct: 390 FERNPTLAPKDIIVMSADIDKYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASF 449 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 + LL+L +S F +E +L LLDV L RF++ E+ L+ LR WVN+ GIR+G+ Sbjct: 450 LMLLNLKESDFSAESLLDLLDVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQ---- 505 Query: 515 ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 + W GLTR+LLG ++++ G WQ + ++ES GL A LVG LA + L W Sbjct: 506 -DDWQNHNAWENGLTRLLLGTSLKAESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAW 564 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 + Q+ LEEW + ++ F+ E+ A+ L+ + + + A++ +++ + Sbjct: 565 YEFIQQDHTLEEWKARIQKLIGEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGI 624 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 ++R L +L+Q++ S +FLAG VN CTL+PMR+IPFKVVCLLGMN+ +PRQ + F Sbjct: 625 EIIRLLLEDKLNQQQSSLQFLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF 684 Query: 695 DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 DLM PKRGDR+RRDDDRYLFLEAL+SAQ+ Y+SYIG+S DN +R PSVLV +L+DY Sbjct: 685 DLMQYAPKRGDRARRDDDRYLFLEALLSAQEIFYLSYIGQSTTDNKQRLPSVLVSQLLDY 744 Query: 755 IGQSHYLPGDEALNCDE--SEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ 812 + + + + SEA + F P+N+ P + SY +EWL Q Sbjct: 745 LAEHLTEQARLQASEKDSFSEALFWQKMVVQQPLTVFSPKNFTP-QYGSYDKEWL--LEQ 801 Query: 813 AGKAHSEFVQP---LPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 + ++F+ L +P + LE L F ++P++ FF +L V FR ++ I ++E Sbjct: 802 QHEPLADFLNKSFDLKAEIPTEINLEDLIAFVSNPIKYFFNHQLGVYFRNDEESIAESEK 861 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L L YQ+ QL+ +E + E F++ + G+LP F ++ + + +L + Sbjct: 862 FSLSDLDDYQLRDQLV--TLEPAEREAFFKQEQLKGNLPIANFAKVSLQDLDDSINELRE 919 Query: 930 RVIACRQPGQSMEIDLACN----GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 ++ +EI+ +++ G + D ++ W+ S L ++LW+ +L Sbjct: 920 LILPYLGESDILEIERLFEVEQLKIRLFGNIRNKFADEIVFWKVSSLKDKDYIRLWIYYL 979 Query: 986 VYCASGGNGESRLFLRKDGE---WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESG 1042 + A G N E R + +RF ++AEQA L I Y L Sbjct: 980 LIQAQGLNLELTAIARSKEKAEIFRFNQVSAEQAFSQLQTYISAYVTSFRQ----LTWGI 1035 Query: 1043 GAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETM 1102 L ++ +D + Q+ + Y + + QR+ +Q + Sbjct: 1036 WTDLDNYFEKLSDKQNVAEYCQQQLSALMDKQYF---------EKSYLQRVLQQSSQLDY 1086 Query: 1103 EAIVEQSQRFLLPLFR 1118 I + + + + Sbjct: 1087 AQIHTVTLEWFELMQQ 1102 >UniRef50_Q0VNI2 Exodeoxyribonuclease V gamma chain n=3 Tax=Gammaproteobacteria RepID=Q0VNI2_ALCBS Length = 1138 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 407/1183 (34%), Positives = 565/1183 (47%), Gaps = 120/1183 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L V H NRL+ L L+ ++RE L P E E LVQS GMAQWL++ L+ GI+A Sbjct: 5 LMVLHGNRLETLTELVADWLQREPLS-PLETETFLVQSNGMAQWLKLQLADALGISAGFQ 63 Query: 62 FPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 F +PA F+W + VL E +P+ S F+K + W+L LLP LL E F LRH+L DD Sbjct: 64 FQMPARFLWGAYRTVLGEDQVPRTSPFDKSRLLWRLYRLLPTLLNSEHFGPLRHFLADDV 123 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL----------VEGLGEAQAWQAPLW 169 D RK QL+ + ADLFD Y +YR DWL WE G+ + +Q WQA LW Sbjct: 124 DGRKRHQLAERLADLFDAYQMYRADWLDDWENGNDRLRKTQDRDTFDDFPASQLWQAHLW 183 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETL---ESATTCPPGLPSRVFICGISALPPVYLQA 226 +AL+ Q R+ +++ F+ L + T PP LP R+ I GISALP L+A Sbjct: 184 RALLADMDDSKQ-GLSRSAIHRDFMAALTQQQEQGTPPPRLPRRLIIFGISALPQQALEA 242 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L AL +H +I +L NPC++YW DI + L + R+ Sbjct: 243 LAALSQHCQILMLVQNPCQHYWADIVEDKQLLRRQLDNRKRHLTALPENRV--------- 293 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELE 346 NPLLA+WGK GRD+I LL D + PD+ Q+ I E Sbjct: 294 ----------NPLLAAWGKQGRDFIGLLYDHD-----------DPDSYRSAFQNQIDLFE 332 Query: 347 NRAVA--------GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 NR + E N+R +DSS+ F + HS QREVE+L D LL Sbjct: 333 NREPHTLLQQLQQDILDLEPLPEPNRRLPLEMDSSLQFRIGHSAQREVEILQDELLDRFS 392 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFIS 456 DPTL PRD+IVMV DI++Y+P I AVFG D RYLPY +SDR A + P+ +A S Sbjct: 393 NDPTLQPRDVIVMVPDIEAYAPHIDAVFGRLERDDPRYLPYTLSDRSAGAASPLAQAVES 452 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL LP RF + D+L LLDVP + RF I E L L +W++++ IRWG++ + L++ Sbjct: 453 LLHLPQWRFTATDILDLLDVPAVRERFGIDEGDLPQLARWIDQARIRWGLNSPQRKTLDV 512 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 P Q++W FGL RML GY + W + P DE +GL AEL G L+ LL L + Sbjct: 513 PGFEQNSWAFGLKRMLAGYLLGDGPA-WMGIEPLDEVAGLGAELAGRLSRLLDTLEQHWQ 571 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL-IEQQWQAIIAEGLGAQYGDAVPLS 635 + +W +L+ F P E + + + +A A + +PL+ Sbjct: 572 QSRTDASARQWQQRFTQLLDDLFAPVDEADQTLDAGLRDALNDWLAACAEADFDSLLPLT 631 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 + R L L+ E +SQRF+AG +NICTLMPMR+IPF+ VCLLGM DG YPRQ P+ FD Sbjct: 632 VARRPLLDALNAESMSQRFMAGRINICTLMPMRAIPFRHVCLLGMKDGDYPRQQQPMDFD 691 Query: 696 LMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 LM Q + GDRSRRDDDRYLFLEAL+SA+ LYIS+ GR+++DNSER PSVLV +L D Sbjct: 692 LMRQWGNYRPGDRSRRDDDRYLFLEALLSARDSLYISWTGRNVRDNSERPPSVLVAQLRD 751 Query: 754 YIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY------------QPGERQS 801 +I Q + E ++ LT H PF + + + Sbjct: 752 HINQRWHTDQGEPVDA----------LTVSHPLQPFSARYFYSANDASAANNADAHILHT 801 Query: 802 YAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 YA EW + P E + L RF PV FF+ RL+ + + Sbjct: 802 YANEWRALHEEQTHRVDNDQPLPPLENNEPISCAALGRFLKQPVAHFFEQRLKARLKQQR 861 Query: 862 SEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER------LFRRFRAAGDLPYGAFGEI 915 + D+EPF +GL R+Q+ QLLN + R +GDLP F E Sbjct: 862 QVLDDSEPFSFDGLQRFQLQDQLLNEALRAGPEHANDAMRVAMDRLAGSGDLPLAPFDEG 921 Query: 916 FWETQCQEMQQLADRVIACRQPGQSM----EIDLACNGVQITGWLPQVQPD----GLLRW 967 ++ + Q + ++ EI L +QI WL ++ L Sbjct: 922 NRDSLLLPLAQPLEHYFTLLADSGTLQPQQEIRLTAGPLQIEDWLTDLRGSSANAQRLVL 981 Query: 968 RPSLLSVA--QGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 L + + W HL CA+G + +DG + P + A L QL Sbjct: 982 HTGKLKERFDKLTRDWTLHLAACAAG-LPLTTHIQGQDGRFSLPHIHRSDAQQCLDQLGY 1040 Query: 1026 GYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEG 1085 +++ + PL V + AWLK + + +E M GE Sbjct: 1041 AWQKALCEPLPVACATAFAWLK-------------GEEKDNGENEARKVFESGFMHTGEQ 1087 Query: 1086 D-DIWYQRLWRQLTPET------MEAIVEQSQRFLLPLFRFNQ 1121 + + R W A +++ PL++ Q Sbjct: 1088 EKEPAIARAWADFDTLLAASHGDANAFEYWTEQLYAPLYQHAQ 1130 >UniRef50_C1D6T7 RecC n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T7_LARHH Length = 1159 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 403/1196 (33%), Positives = 561/1196 (46%), Gaps = 133/1196 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-FGIAANI 60 + H+NR ++L ++ + R+ L P + E+ LVQS GMAQWL+ L++ GIAA + Sbjct: 7 FTILHANRAEMLRDVILAWLARDPLSSPLDDEVFLVQSQGMAQWLKHALAESPAGIAAAL 66 Query: 61 DFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 DF LP F+W + VL E +P +S F+K +SW+L LP L F L ++ D Sbjct: 67 DFQLPQGFLWRCYRAVLGEDSVPAQSPFDKAPLSWRLYRELPAWLHEPVFAPLARFVEAD 126 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV-------EGLGEAQAWQAPLWKA 171 +D R+L+QL+ + ADL+DQY YR DWL WE GH L E + WQA LW+ Sbjct: 127 ADPRRLYQLAHQLADLYDQYQSYRADWLTGWENGHDDITRHGRPAPLPEGERWQAELWRR 186 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 L HRA ++QRF+ L T P LP RV + G+SALP L+AL A+ Sbjct: 187 LAGQL--ASARHTHRAAVHQRFVAALREGTPPPGSLPERVVVFGLSALPQQTLEALDAIS 244 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 +H + + NPCRYYWGDI + + QR L + Sbjct: 245 RHSHVLMAVNNPCRYYWGDIVEGREWLRRQAEQRHRRRSGMPAAL-----------DDST 293 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQ--------ELDAFVDVTPDN---LLHNIQS 340 +PLLASWG+ GRD+I LL+D + Q ++D F + P LL +Q Sbjct: 294 LHLHAHPLLASWGRQGRDFIALLADYDRWQSAAATHAQDIDLFDEAVPAGTLPLLQQVQQ 353 Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 +LEL E ++ PL D SI FHV HSP REVE+LHD+LLAM ++ Sbjct: 354 AVLEL----------EPLPAEPHRLPLP--DHSIAFHVAHSPLREVEILHDQLLAMFDDP 401 Query: 401 P-TLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISL 457 L PRD++VMV DI SY+PFI+AVFG P D R++P+A+SD+ A + P+L A L Sbjct: 402 ELALKPRDVMVMVPDISSYAPFIRAVFGKLPPDHPRFIPFALSDQSAVSTEPLLRALQQL 461 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L LP R +VL LLDV + RF + E L L +W+ SGIRWG+ EL +P Sbjct: 462 LDLPALRLTVSEVLELLDVAAMRRRFRLRETDLPLLTRWIEGSGIRWGLSAAQRAELGMP 521 Query: 518 AT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 Q++W FGL RMLLGYA + WQ + PYDE G+ A L G LA LL L WR+ Sbjct: 522 DDFDQNSWHFGLDRMLLGYACGAGAS-WQGMAPYDEVGGMDAALAGQLADLLSTLAHWRQ 580 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL---IEQQWQAIIAEGLGAQYGDA-V 632 L + W + A D + E + L I +A G D + Sbjct: 581 CLQEPATPAGWQARIAALAEACL--DIKDEHDLLLYAGIADTLDNWVATLDGNGLADTRL 638 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 PL ++RD L +L +S RFL G VN TLMPMR+IPFKV+CLLG+NDG YPR Sbjct: 639 PLEVVRDVLLGQLADTSVSMRFLGGAVNFGTLMPMRAIPFKVICLLGLNDGDYPRSQNRA 698 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FDLM+Q + GDRSRRDDDRYL LEAL+SA+++ Y+S++G+S +DN R PSVLV++L Sbjct: 699 DFDLMAQDYRPGDRSRRDDDRYLLLEALLSARRRFYLSWVGKSPRDNRPRPPSVLVEQLR 758 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ----------PGERQSY 802 DY+ L + + + A LT H PF P+ + +Y Sbjct: 759 DYLAAGWQAA---PLGTEPATTGLLAALTTEHPLQPFSPRYFSRAPDARPQPDQPPLFTY 815 Query: 803 AREWLPAASQAGKAHSEFVQPLPFTL--PETVPLETLQRFWAHPVRAFFQMRLQVNFRTE 860 +W TL RF P F RL+V F Sbjct: 816 DSDWRAIHDATDPPAEPAAALPLPLPDWDGRTDAVTLARFLRQPAATFLHGRLKVRFGEL 875 Query: 861 DSEIPDTEPFILEGLSRYQINQQLLNALVE------QDDAERLFRRFRAAGDLPYGAFGE 914 D E+ + EPF L+ L+ +Q+ +LL A+ + + R G LP+GA G Sbjct: 876 D-ELAEDEPFALDPLATHQLKSRLLEAVRDVPEAETGRHWQAAATRLTEEGGLPFGAAGA 934 Query: 915 IFWETQCQEMQQLADRV-----------------IACRQPGQSMEIDLACNGVQI----- 952 + + L + Q+ + C+G+Q Sbjct: 935 QLLQACHAPVMALRQNWHRLDDLTDLPPLTLPPLLLPLAGDQTATLLAHCDGLQAVAADS 994 Query: 953 ---------TGWLPQVQPDGL-LRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRK 1002 TG L G RW P + + W HL A+G L + + Sbjct: 995 PPLRRRVMRTGRLADSAGRGADTRWIP---RLHTLVGFWPAHLALQAAG-LAIPTLIVGE 1050 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 + PL A++A H L L +R+ PL + ++ G WL+ Sbjct: 1051 TVTLQLAPLPADEARHCLQVLAGYWRQAHGEPLPLPCKTAGVWLQ--------------- 1095 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDD-IWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 Q+ + QAYEG GE + RL+ + + + PL Sbjct: 1096 --QQDASAARQAYEGGYHSTGERAESPALARLFPAFEDLDLARLDALATDLYAPLL 1149 >UniRef50_C5JAU6 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=uncultured bacterium RepID=C5JAU6_9BACT Length = 1183 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 403/1195 (33%), Positives = 568/1195 (47%), Gaps = 129/1195 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG------ 55 L + H NR+++L + RE P E E+ILVQS GMAQWL++ L++ G Sbjct: 10 LTLIHGNRIELLRDDLVDRFRREPSA-PLESEIILVQSNGMAQWLKLGLAETGGRGGGGG 68 Query: 56 ----IAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFT 109 IAA ++ LPA F+W ++ VL E +P+E+ F+K + W+LM LLP + E F Sbjct: 69 SGLGIAAALELLLPARFLWRIYRSVLGEAAVPEETPFDKTRLVWRLMRLLPGIAAEERFA 128 Query: 110 LLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEA 161 LRH+L D+D+RK +QLS + ADLFDQY VYR DWLA W G + + E Sbjct: 129 PLRHFLRQDADQRKCYQLSVRLADLFDQYQVYRADWLACWAKGEDLLIDARGRRSAIPEE 188 Query: 162 QAWQAPLWKALVEYTHQLGQPRW----HRANLYQRFIETLESATTCPPGLPSRVFICGIS 217 Q WQA LW+ L+ + G RA ++ F+ + P GLP RV + GIS Sbjct: 189 QRWQAALWRLLIADVARTGAGVDAVSGGRAEVHAAFLRRARTEDLLPAGLPRRVTLFGIS 248 Query: 218 ALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLF 277 ALP L+ L AL + ++ + NPC++YW D+ L + QR Sbjct: 249 ALPYQSLEVLMALSRWTQVLMYVHNPCQHYWADVIAGRELFRARRGQR------------ 296 Query: 278 RDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV-------- 329 + + PLLA+WG GRD+I LL D L A + Sbjct: 297 GGAHGVAEPVPEALLHLHAQPLLAAWGMQGRDFIGLLEDAVGEGALWAEGEPLAFDVERE 356 Query: 330 --------TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHS 381 LL +Q DILEL +R+ D S+ FHV H Sbjct: 357 ACFVARGGAAGTLLQQLQEDILELRPLDE--------TRALWPPVDAQQDRSLCFHVAHG 408 Query: 382 PQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG--SAPADRYLPYAI 439 QREVE+LHD+LL L DP+L+PRDI+VMV DID+Y+ IQAVFG A R++P+ + Sbjct: 409 AQREVEILHDQLLDALNADPSLSPRDILVMVPDIDAYAAHIQAVFGLHGANDPRFIPFVV 468 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 +R R++ +L LL L +R + D+L L++P L RF I E L LR+W+ + Sbjct: 469 VNRTRRKADLLLMTLERLLGLARARVTANDLLDWLELPALRRRFGIAEADLPLLRRWIRD 528 Query: 500 SGIRWGIDDDNVRE-LELPATG------QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDE 552 SGIRWG+D + L +P +HTWRFGL RMLLGYA+ W + P+DE Sbjct: 529 SGIRWGLDASHCGAVLGVPGGEIDGTRTRHTWRFGLERMLLGYAVGDRGAPWCGIAPFDE 588 Query: 553 SSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLI 612 EL+G LA L+ + R + + W R +L FF P+ E A TL+ Sbjct: 589 IGLGDGELLGRLADLVAAVEATWRQMKSAATVAAWCGRLRGVLARFFAPEEEDADAYTLL 648 Query: 613 E--QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSI 670 A A AQ D +P++++ + L++ +SQ F AG V TLMPMR+I Sbjct: 649 RLDAHLDAWEALCAEAQLVDPLPVTVVGEYWLSCLEEGGLSQGFFAGAVTFATLMPMRAI 708 Query: 671 PFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYIS 730 PF+ VCLLG+NDG +PR + FDLM + + GDRSRR+DDRYLFLEAL+SA+++L + Sbjct: 709 PFRQVCLLGLNDGAFPRPGNRIDFDLMGGRYRPGDRSRREDDRYLFLEALLSARERLALF 768 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD 790 ++GR I DN+ PSVLV +L D++ L G A S + A LT H PF Sbjct: 769 WVGRGIHDNAVAPPSVLVGQLRDHLAAGWRLAGG-ADPAGGSGQALVAALTVEHPLQPFS 827 Query: 791 PQNYQPGE-----RQSYAREWLPAASQAGKAHSEFVQPLPFTLP----ETVPLETLQRFW 841 + G +YA EW P A +AG + V +P P E + L L R + Sbjct: 828 RDYFCRGAETDARLFTYAHEWRP-AREAGAPAALPVGSVPLLPPVTREEPLRLVELARLF 886 Query: 842 AHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRF 901 PVR FFQ RL V F E + D EPF L+ L +Q LL A E D +R R Sbjct: 887 KDPVRGFFQQRLGVRFEREALFLDDHEPFDLDALEHWQSIDALL-ACREPDALDRGLERL 945 Query: 902 RAAGDLPYGAFGEIFWETQCQEM-------QQLADRVIACRQPGQSMEIDLACNG--VQI 952 R +G LP G GE E + + Q L R ++ +G V + Sbjct: 946 RLSGVLPAGGQGEHLAEALRETLTRLNGQEQALLARWSGEEIGERTFRFARQIDGRSVAV 1005 Query: 953 TGWLPQVQPDGLLRWR----------PSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRK 1002 L V+ + R ++ ++ W+EHL + G G + + L + Sbjct: 1006 VDSLRGVRRGNGVLGRIVRTASRVLNAGVIRPEVLIEAWVEHLAWQMRLGAGIT-VVLGR 1064 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 DG PL+ + A L L+ + +GM PL LP G A Sbjct: 1065 DGGIELAPLSRQAAGMALEALLAAWWQGMRHPLAFLPGVGWAGFDGV------------- 1111 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPL 1116 +KA F + + +R++ T + + S+ L PL Sbjct: 1112 --EKAEKAFERI---------RVHHPYVRRVFVDFTAFAASGELEQWSEALLRPL 1155 >UniRef50_Q1N2R1 Exonuclease V gamma subunit n=1 Tax=Bermanella marisrubri RepID=Q1N2R1_9GAMM Length = 1101 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 358/1153 (31%), Positives = 553/1153 (47%), Gaps = 101/1153 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML VY SNR++ L + +V + P +P+ I+V++ G+A WL+M L+Q GIAANI Sbjct: 1 MLNVYQSNRMEGLLGQLIKLVLQSD-SSPLQPKTIVVENPGLAHWLKMQLAQTLGIAANI 59 Query: 61 DFPLPASFIWDMFVRVLPEIPK----ESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHY 114 FP+P+ F W + ++ + + ES FNK ++W + +L + +L+R F LL Y Sbjct: 60 QFPMPSRFFWQLQRDLVSDSQEAWQTESIFNKDPLTWFVFDVLSESQILQRPGFELLADY 119 Query: 115 LTDDSDK-RKLFQLSSKAADLFDQYLVYRPDWLAQWETG--HLVEGLGEAQAWQAPLWKA 171 + D D+ +L+QLS++ AD++DQYLVYRPDW+ WE + E WQA LW+ Sbjct: 120 VKDSDDESLRLYQLSTRIADIYDQYLVYRPDWIKSWEQQTFAIDGQPLEEARWQAELWQI 179 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 L + G P HRA+L + F+ L++A + LP V G S LP +++L L Sbjct: 180 LRQEAISRGFPLHHRASLTEDFLHLLQTAESI-ESLPKDVIFFGFSTLPKNQIESLALLS 238 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 H ++HLL NP + YWGDI D A+L R + D Sbjct: 239 SHCDVHLLTPNPSQTYWGDILDERLQARLRLRGKSVPMAD-------------------- 278 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVA 351 GN LLAS G++G++Y LL DL+ +E D FVD +LL IQ+ IL L+ + Sbjct: 279 ---SGNALLASLGRMGQEYQRLLLDLDVYEEHDLFVDADDQSLLGRIQNQILHLQQSSSQ 335 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 ++P D SI CHS REVEVLHD L L + + P+DI+VM Sbjct: 336 ------------PEHIEPNDDSIKIVGCHSAMREVEVLHDH-LLDLLQQSDVDPQDIVVM 382 Query: 412 VADIDSYSPFIQAVFGSAPADR-----YLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 + D+ Y+P+I AVF +R +PY+ISDR ++ HP++ FI LL++P SR Sbjct: 383 IPDVARYAPYIDAVFQGGVDNRQGDRVRIPYSISDRPIQEEHPLINGFIQLLNMPKSRMS 442 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 +V+ALL++P + +FD+ E+ L ++QW+ + IRWG D+ + + LP Q+TW Sbjct: 443 YSEVIALLEIPAVYRKFDLDEKQLHQVKQWLELAAIRWGYDETHRSKQGLPKWQQNTWLH 502 Query: 527 GLTRMLLGYAMES----AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 G R+L+GYA + P + GL A +G + + + +L + Sbjct: 503 GFQRLLMGYAFSERLAPNDELPFDISPVENVEGLEAASLGPVMNFVNELYEFVLATENLH 562 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 EW +D L FF E + + I Q + + + +P S++ + Sbjct: 563 SCTEWRYFLQDSLQRFFDVTTEEQPVLEQIHQVLENWLQTSQYVNFSHDIPFSVVYQGVQ 622 Query: 643 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 Q L + SQ F+ G VN CTL+PMRSIPFK V +LG+ND YPR + DLM + Sbjct: 623 QGLQKNNGSQHFMIGRVNFCTLLPMRSIPFKYVAVLGLNDQEYPRTVPGNSLDLMRFNRR 682 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 GDR+RRD+DRYLFLEA++SA+Q L++SY + N+ PSV++ E +DY+ + + Sbjct: 683 VGDRNRRDEDRYLFLEAILSARQGLWLSYRSLDQKQNTPMTPSVVLAEFMDYLDINFF-- 740 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-QSYAREWLPAASQA-------- 813 E+ L H F+ Q + G + SY W + Q Sbjct: 741 --------SGESAASQILFTQHPLQAFNRQYFIAGSKLHSYQTNWFKSIYQLQSDANQTF 792 Query: 814 ----GKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 GK+ + V L TL RF+ P RAF +L + F D EP Sbjct: 793 QEEKGKSSVPVLSQPNGINMLEVGLSTLVRFFQLPARAFLNQQLNIQFHNLADMHEDEEP 852 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L GL RY +L ++ + R LP+G GE W+ Q ++ + Sbjct: 853 FELSGLDRYAAKDYILQQTIQGRSIDPR----RLQPWLPFGKIGERHWQRTRQSVEDVLA 908 Query: 930 RVIACRQPGQ--SMEIDLACN-----GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWL 982 + + +EI+LAC + GW+ +V L+ + + ++L + Sbjct: 909 EATSMGLENKEGPLEINLACEYQNGQNTSLVGWINEVYQGRLVLLKVAKFQAKHLIELLI 968 Query: 983 EHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESG 1042 E A G N S + +D P++A +A YL++L+ Y + PL +PE+ Sbjct: 969 ESAALNAQGYN-YSGCLVTQDIRINVKPMSASEAKSYLNKLLSYYFSHQNQPLNFMPETA 1027 Query: 1043 GAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETM 1102 A + D QKA +F++ + + E D Y R + ++ Sbjct: 1028 WALY--------NPTTKQDLRSQKALQRFVEVNDYSYYDP-ERLDPHYHRCFGNVS-ILP 1077 Query: 1103 EAIVEQSQRFLLP 1115 E ++E + P Sbjct: 1078 EQLIEVAHDLFEP 1090 >UniRef50_D0KY94 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY94_HALNC Length = 1183 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 378/1212 (31%), Positives = 570/1212 (47%), Gaps = 147/1212 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------F 54 + NRL++L+ ++ ++R L P E E LVQS GMAQWL++ L++ Sbjct: 15 FLLIQGNRLELLQQVLIDWLKRHPLA-PLENETFLVQSNGMAQWLRLGLARPRSAQDGGL 73 Query: 55 GIAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLR 112 GIA I+ LPA W + VL +P E+ +K + W+LM LLP L+ F LR Sbjct: 74 GIATGIEMILPARLQWQCYRAVLGTDFVPAEAPLDKDKLVWRLMRLLPNLIHTPSFLPLR 133 Query: 113 HYLTDD--SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV-----EGLGEAQAWQ 165 HY+ D D R+L+QL+ + AD FDQY VYR DWL W+ GH L + Q WQ Sbjct: 134 HYIVTDQRPDDRRLYQLALRVADQFDQYQVYRADWLRHWQEGHDDLPAHETRLPDEQRWQ 193 Query: 166 APLWKALVEYTHQLGQPR------WHRANLYQRFIETLESATTCPPGLPSRVFICGISAL 219 PLW+AL+ + R RA+L+ F + P GLP R+ + G+S++ Sbjct: 194 PPLWRALLADIRERQDDRDGIEFAAGRADLHTAFRKAASEQKARPEGLPRRIVVFGLSSI 253 Query: 220 PPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD 279 P L L + ++ + F NPC YYWGDI D L + RR Sbjct: 254 APQVLDVLAVASRWSQVIVCFLNPCEYYWGDIIDGHQLFAQRYQGRRPYKSAPN------ 307 Query: 280 SENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAF-----------VD 328 E +PLLA+WG+ GRD + LL E + +L A VD Sbjct: 308 ------------ETAHAHPLLAAWGRQGRDLMRLLDQFEENAQLAANPLTLTPFESTVVD 355 Query: 329 VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEV 388 +LL IQ DIL+L R+ N+R D S+ FH+ HSP REVE+ Sbjct: 356 SAKSSLLTLIQDDILKLRTPDEL--------RALNRRLEPDQDHSLHFHIAHSPLREVEI 407 Query: 389 LHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQ 446 LHD+LLA E D +L P DIIVMV D+ Y+P I A+FG D +++P++ISD+ A Sbjct: 408 LHDQLLAAFEADTSLKPTDIIVMVPDMSLYAPAISAIFGRFGRDDPQHIPFSISDQAASG 467 Query: 447 SHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGI 506 ++ A +L+LP SR + ++L LL P+L ARF I+E L L W++ +GIRWG+ Sbjct: 468 QVALINALEQILNLPTSRLLRSELLDLLGSPLLLARFGISETDLTTLHDWIDSAGIRWGL 527 Query: 507 DDDNVRELELP-ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA 565 + + +P Q+TW FGL R+LLGY W + P+ G+ AELVG LA Sbjct: 528 NAQHREAFGVPPGMEQNTWAFGLNRLLLGYLSGDENAIWDEIEPHPVMDGISAELVGKLA 587 Query: 566 SLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEA-----------AMTLIEQ 614 L+ QL+ + + L+++ EW+ R ++ FF + + Sbjct: 588 QLVQQLDKYTQRLSEKCTPTEWVARLRRLMTDFFSLSDTQNHLDSPEIQIEMDTLARLHN 647 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 + + +A+ A + + + + +R RL+ R+ QRF+ G VN TLMPMR+IP++ Sbjct: 648 ELERWLADCSVAGFENEIDIETVRHAWLNRLEPHRLHQRFIVGGVNFATLMPMRAIPYRH 707 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 + LLGM+D YPR+ P FDLM+ + + GDR+RR+DDRYLFLEAL++A+++L IS++GR Sbjct: 708 IYLLGMDDANYPRRQTPNDFDLMNGRYRPGDRARREDDRYLFLEALLAARERLSISWVGR 767 Query: 735 SIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY 794 +I +N R SVLV +L DY+ Q +P + + + T H PF + + Sbjct: 768 NINNNKIRPASVLVSQLRDYLDQFWAVPEPHSCSEIQ---------TTEHPLHPFSRRYF 818 Query: 795 QPG--ERQSYAREWLPAASQAGKAHSEFVQPLPFTLP-ETVPLETLQRFWAHPVRAFFQM 851 + ++A +W LP LP E + L TL F P Sbjct: 819 SADNTDLFTFANDWRAVHDSTQGTSKT---ELPIWLPKEPLTLNTLSDFLRTPAHTLLTK 875 Query: 852 RLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERL-------------- 897 R V R +E+ D EPF L+GL R+Q+ +++ + + Q + Sbjct: 876 RFGVYLRPTATELEDHEPFELDGLQRWQLKKEINDRVRHQLAIQAHATSQMTTPTIEHIS 935 Query: 898 ------FRRFRAAGDLPYGAFGEIFWE-----TQCQEMQQLADRVIACRQPGQSMEIDLA 946 + + R G LP + + E Q Q +L R + I + Sbjct: 936 ALISTQYGQARLGGRLPIVSPAFEYSELLPLIDQWQRWLELNLRFHQTAAKSPVLSIR-S 994 Query: 947 CNGVQITGWLPQVQ-------PDGLLR--------WRPSLLSVAQGMQLWLEHLVYCASG 991 G+ + +P V D L R R + + + W HL+ + Sbjct: 995 DRGIMLEASVPDVYSTESSIPNDTLARLIFIEGKLHRGQDIEWHKCVAQWPAHLLAQLTH 1054 Query: 992 GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYD 1051 G+ E+ L + G F P+ E A +L L++ + + + AP + ++ C Sbjct: 1055 GSVETYLI-GETGTLCFTPIEKEMAKQHLLTLLDAWFDAVQAPYPLACKTAF-----CLL 1108 Query: 1052 AQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDD-IWYQRLWRQLT------PETMEA 1104 AQ + DS L+KAR + +EGNM V GE + RLW + + Sbjct: 1109 AQEMTPENTDSALKKAR----ECFEGNMKVPGEVTNSPALARLWPDFSTLINGQSFAKKQ 1164 Query: 1105 IVEQSQRFLLPL 1116 E SQ P+ Sbjct: 1165 FTELSQIIYAPI 1176 >UniRef50_C6MAC3 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Neisseriaceae RepID=C6MAC3_NEISI Length = 1068 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 346/1137 (30%), Positives = 533/1137 (46%), Gaps = 100/1137 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SNRL+ L AL I L+ E I+VQS GM ++L + L+++ G+AAN+ Sbjct: 1 MFYLYQSNRLESLAALFAGIQRVRPLESALAAEQIVVQSQGMRRYLSVYLARELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHYLTD- 117 F LPA W + +++P+IP S F+ + M W+L+ L +F +R L Sbjct: 61 QFSLPAGLTWQLMQKLIPDIPALSPFSPEVMRWRLLDLFRSERFQTTSEFENVRSILQSY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 S + +QL+ + AD+FDQYLVYRP W+ W+ G L+ GLGE + WQA LW+ Y Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQEGKLL-GLGEDEVWQAQLWR----YL 175 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 Q HR L+++ + +L+ LP R F+ GIS + P+YLQ LQ + +H ++ Sbjct: 176 DDGNQSAPHRVALWEKLLSSLDK-----AHLPERFFVFGISTMAPMYLQLLQKISEHCDV 230 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 + NP YWG++ + A L K + G Sbjct: 231 FVFALNPSGQYWGNVIEAAQLLK--------------------------GGDEADLSQTG 264 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 +PLLAS GK GRD+ L+++ +E F +V+ D LLH +Q+DI L Sbjct: 265 HPLLASLGKQGRDFFDFLTEIG-LEEQPVFEEVSDDTLLHCLQNDIQNLRMP-------- 315 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 S++ R D SI HSP RE+++L D+LL +L E P P DI V+ +I+ Sbjct: 316 ----SEHSRADLLGDGSIRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVLTPNIE 371 Query: 417 SYSPFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 YSPFI+AVFG A + LPY++SD + + +L A L L +SRF + VL LL+ Sbjct: 372 PYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQSLLYALEQTLDLLESRFEVDKVLPLLE 431 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 ++ RF +T + L L V E + WG+D A TW+ L R++LG+ Sbjct: 432 SGLVLRRFGLTADDLPLLHDTVAELNVHWGLDGTMRGA----ADNLFTWQQALERIVLGW 487 Query: 536 AMES-AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 + WQ+V + + ++ G A+ + L+ + EEW CRD+ Sbjct: 488 MLPDDGSPLWQNVSAWHGDVNRL-DVFGRFAAFIRTLSRLAAEWRKPASAEEWTERCRDL 546 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 + + FLPDA+ + A+ EQ E A + +P + + + L E + F Sbjct: 547 VQSLFLPDADDQYALQQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSESQA-GF 605 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L G + C+++PMRS+PFKV+CLLG+NDG +PR FDL+++ P++GDR+RRDDDRY Sbjct: 606 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARRDDDRY 665 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEA+ISA+ LY+SY+GRSI+++ E PS LV ELID I Sbjct: 666 LFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTIAA----------MTGRRSK 715 Query: 775 RVKAHLTCLHTRMPFDPQNYQPGE--------RQSYAREWLPAASQAGKAHSEFVQPLPF 826 + H H PF + + RQ YA +A F + L Sbjct: 716 GLAEHWVEQHPLQPFSHRYFIADNISDDLFSTRQDYAE---ALNRPREQARPFFSEALEE 772 Query: 827 TLP-ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL 885 P TV + RFW +PV+A+ Q L D EPF +I L Sbjct: 773 NTPVPTVWQDDFIRFWKNPVKAWLQQTLGWREPYRDEAWESAEPFE--PQRADKIAAAYL 830 Query: 886 NALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL 945 +A D + R A LP G G+ W+ Q + D + ++ Sbjct: 831 DARRHNQDFQETAVRLDAESLLPAGELGK-LWQQNFQAAAKRIDGALLQSPKLPPFAYEV 889 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN---GESRLFLRK 1002 +G + G L + G + + + Q + L LEHL++CA G + ++ Sbjct: 890 PFDGQTLQGSLGNLYQCGQVFYLDRKPNAPQRIALLLEHLIFCAVGSSETETRQTHIVQP 949 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 + +P + + QA L + + + G + PL ++ A + Q+ + Sbjct: 950 EETTLYPEIPSSQAQEMLQKWLAFFNLGQTRPLPFFAKTSLAAAEAYGKKQS-----WED 1004 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEA--IVEQSQRFLLPLF 1117 TL KAR ++Y GN + +G+ D ++ E +E + L+PL Sbjct: 1005 TLNKAR----ESYHGNKVSKGQKDYTEVALVFGNEDTEPVEGALFQRLVEELLIPLL 1057 >UniRef50_A1KVC5 Exodeoxyribonuclease V n=23 Tax=Neisseria RepID=A1KVC5_NEIMF Length = 1069 Score = 923 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 343/1121 (30%), Positives = 528/1121 (47%), Gaps = 97/1121 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SNRL+ L AL I + + L +PE I+VQS GM ++L L++ G+AAN+ Sbjct: 1 MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLER--EDFTLLRHYLTD- 117 F LPA W + +++P IP+ S F + M W+L+ L R +F +R+ L D Sbjct: 61 SFSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 S + +QL+ + AD+FDQYLVYRP W+ W+ G + GLG+ + WQ+ LW+ Y Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRL-GLGDDEIWQSKLWR----YL 175 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 Q HR L+++ + L+ LP R F+ GIS + P+YLQ L L +H ++ Sbjct: 176 DDGRQSAPHRVALWEKLLAALDKD-----KLPERYFVFGISTMAPMYLQLLHKLSEHCDV 230 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 + NP YWG++ + A + K G Sbjct: 231 FVFALNPSGMYWGNVIEAAQILK--------------------------GGGDPDLTQAG 264 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 +PLLAS GK GRD+ L+++E E F + D LLH +Q+DI L+ Sbjct: 265 HPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMP-------- 316 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 S+N ++ D SI HSP RE+++L D+LL +L E P P DI V+ I+ Sbjct: 317 ----SENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPHIE 372 Query: 417 SYSPFIQAVFGSA-PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 SY+PFI+AVFG A P + LPY++SD + + P+ A L L +SRF + VL LL+ Sbjct: 373 SYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLE 432 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 + RF +TE+ L L V + + WG+D + TW+ + RM+LG+ Sbjct: 433 TAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRG----GTDQLFTWKQAVERMILGW 488 Query: 536 AME-SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 + WQ V + A L G A+LL L+ R Q + EW+ CRD+ Sbjct: 489 MLPEGGNPMWQDVSAWYADVNQTA-LFGRFAALLETLSDIVRIWRQPATIGEWVARCRDL 547 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 L F +A+ + ++ +E +W AE AQ+ +P + + + LD E + F Sbjct: 548 LETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEA-GF 606 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L G + C+++PMRS+PFKV+CLLG+NDG +PR FDL+++ P +GDR+RRDDDRY Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY 666 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEALISA++ LY+SYIGR I+ + E PS L+ ELID + + Sbjct: 667 LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGI----------GSR 716 Query: 775 RVKAHLTCLHTRMPFDPQNYQP--------GERQSYAREWLPAASQAGKAHSEFVQPLPF 826 ++ + H F + +Q G R YA F QP+ Sbjct: 717 QLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAT---ALGQTPEPPQPFFDQPVEN 773 Query: 827 TLP-ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL 885 P + + RFW +PV+ + Q +L + EPF QI + + Sbjct: 774 AEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFE--PQHADQIAETYI 831 Query: 886 NALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL 945 A E D + R A LP G G W+ Q + D + + + Sbjct: 832 EARREGRDFAQTAARIGAESLLPSGELG-RLWQQNFQTAAKQIDTAVLNSPKLPPLSYAI 890 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA-SGGNGESR-LFLRKD 1003 +G + G L + G + + + Q + LEHL++CA E+R F+ + Sbjct: 891 PSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQS 950 Query: 1004 GEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 GE +A ++AL LS+ + + G + PL ++ A + Q+ Sbjct: 951 GETEILAEIAQDRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQD-------- 1002 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME 1103 + A K AY GN + +G+ D ++ + +E Sbjct: 1003 -WEAALKKAQTAYYGNKVSKGQKDYTEVALVFGNASQNPLE 1042 >UniRef50_C7I4N7 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I4N7_THIIN Length = 1173 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 382/1200 (31%), Positives = 563/1200 (46%), Gaps = 144/1200 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + NRL++L + + ++ L P E E+ILVQS G A+WL+M L+ + GI A Sbjct: 9 LFILQGNRLELLRDALLEWLAQQPLA-PLEEEVILVQSNGAAEWLKMALAAQGGICAATR 67 Query: 62 FPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQ------------------ 101 LP F+W + +VL P +S +K ++W+LM LL Sbjct: 68 VELPGRFLWRTYRQVLGRAATPSQSPLDKPLLTWRLMRLLGAPGAELHPARPPWESRKLG 127 Query: 102 ---------LLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 L+ + L YL D + QL+ + ADL+DQY +YR DWL W G Sbjct: 128 AAQRFLEGGTLDADVCAPLLQYLQGQ-DLLRRLQLAQRLADLYDQYQIYRDDWLDAWAQG 186 Query: 153 HLV--------EGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTC- 203 V L E Q WQA LW+ ++ + + + RA + + ++ L +A Sbjct: 187 RDVLIDALGRATPLPEDQRWQAWLWRRVLAELSE-AERQSTRAQVQRAMLQALNTADIAA 245 Query: 204 ---PPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKL 260 P LP RV + G S LP V L AL AL +++++ + NPCRY+W DI + L + Sbjct: 246 DPTRPALPRRVVLFGASHLPTVVLDALVALSRYVQVLIALPNPCRYHWADIIEGRELLRA 305 Query: 261 LTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS 320 +R D + + +PLLA+WG+ GRD++ L + Sbjct: 306 APARRPLRAGDLAQ------------VSLEVMHAHAHPLLAAWGRQGRDFMRQLDAFDER 353 Query: 321 Q---------ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLD 371 D F D D LL +Q+ I +L ++ + D Sbjct: 354 ANAADRPGLPRHDLFDDAPGDTLLEQMQAAIRDLLPL-----------PEHSRTLISAAD 402 Query: 372 SSITFHVCHSPQREVEVLHDRLLAMLEEDPT---LTPRDIIVMVADIDSYSPFIQAVFGS 428 S+ FH+ HS QREVE+LHD+LL +L + L PRDI+VM DI ++P I+AVFG Sbjct: 403 RSVVFHIGHSAQREVEILHDQLLHLLAQPSGGRPLRPRDIVVMTPDIAPFAPAIRAVFGQ 462 Query: 429 AP--ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486 P +R++P+ I+D AR + P+L A LL LP R ++ D+ ALLDVP +A RF + Sbjct: 463 YPPGDERFIPFDIADLSARATEPLLLALDWLLRLPQERILASDISALLDVPAIARRFGLR 522 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQ 545 E L QW+ +G+RWG+D D+ L L A Q++WRFGL RMLLGYA G ++ Sbjct: 523 PEDRPRLTQWIVGAGVRWGLDVDHRAHLGLGACGEQNSWRFGLRRMLLGYAGAGEDG-FE 581 Query: 546 SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP-DAE 604 +++P+DE GL A LVG LA LL L W R Q +W RD+L+A LP D Sbjct: 582 NIVPFDEIGGLDAALVGPLADLLDVLQAWWRTALQNATPGQWAQYARDLLDAISLPQDLR 641 Query: 605 TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTL 664 ++ + AQ+ +AVPL +LR+ LD+ RFLAG V CTL Sbjct: 642 ERETRARLDDALSTWLDHCAAAQFDEAVPLQVLRESWLSGLDEAAGGGRFLAGGVTFCTL 701 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALIS 722 MP+R+IPF+VVCLLGMN+G YPR+ FDL+ Q + + GDR+RR+DDRYL LEAL+S Sbjct: 702 MPLRAIPFEVVCLLGMNEGDYPRRSPHSDFDLLHQPGQYRPGDRARREDDRYLMLEALLS 761 Query: 723 AQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTC 782 A++ LY+S+ GRS +DN+E+ PSVLV +L DY+ E + + A T Sbjct: 762 ARRMLYVSWAGRSPRDNTEQPPSVLVAQLRDYLAAGWQ---------GEGQGDLLAQRTT 812 Query: 783 LHTRMPFDPQNYQPG-ERQSYAREWLPAASQAGKAHSEFVQ-PLPF-TLPETVPLETLQR 839 +H PF + ++ +YAREW A + + P+PF L E + L+ L R Sbjct: 813 VHPLQPFSRRYFEGDAALFTYAREWRQAHGGVAENGTGNGNGPMPFEPLTEPLSLQQLAR 872 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE------QDD 893 F +PV+AFF+ RL V F + D E F L+GL R+ + L++ + Sbjct: 873 FLKNPVKAFFRTRLDVVFDELQT-QDDDEVFALDGLDRHSLLSHLIDDPQAAVYEGIEAA 931 Query: 894 AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ-------------PGQS 940 R R+ + +G LP A G + QE L Q Q Sbjct: 932 VARRVRQLQGSGALPMRALGSRVAQGLEQEALPLLRSWSELAQAYPQAVDKRALIVEHQD 991 Query: 941 MEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVA--QGMQLWLEHLVYCASGGNGESRL 998 + +D +G++ G P R + + W+ + A G+ L Sbjct: 992 LRLDDWLDGLRTGGQSPIWMQLNASRLSDGKAQARAEKLIDAWVRQMAASA-CGHAVQGL 1050 Query: 999 FLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAML 1058 + D P L +A +L L+ ++EGM PL + A LK Sbjct: 1051 LIGADARVDLPSLPPAEARDHLHTLLAAWQEGMRRPLPFTARTALAELKN---------- 1100 Query: 1059 DDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 K + YEG GE ++ R + + + + + +L LFR Sbjct: 1101 ----------RKGQEVYEGGYCTSGEVEEPCLARTFPDFASLSADG---RFETYLAELFR 1147 >UniRef50_Q5QUQ7 Exonuclease V gamma subunit n=2 Tax=Idiomarina RepID=Q5QUQ7_IDILO Length = 1155 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 379/1127 (33%), Positives = 559/1127 (49%), Gaps = 96/1127 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 V H +RL+ L + + L P E E +LVQS G+AQWL++ L+Q GIAA ID Sbjct: 8 FIVAHGHRLEDLTDVAVTFTQNYPLA-PLEQETVLVQSNGIAQWLKINLAQASGIAAMID 66 Query: 62 FPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLLPQLLER-EDFTLLRHYLTDDS 119 LPA F W + VL + IPK S F+K ++W+LM LLP+L+E F L+HY +DDS Sbjct: 67 VTLPARFQWKAYRAVLGDDIPKTSPFDKDRLTWRLMRLLPELIEHNPHFAPLKHYTSDDS 126 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV----EGLGEAQAWQAPLWKALVEY 175 D RKL+QLS + ADLFDQY VYR DWL W G + + + + Q WQ LW+A+ Sbjct: 127 DGRKLYQLSGRLADLFDQYAVYRADWLDNWVRGQDMLEQEQPVEDEQLWQPELWRAVSND 186 Query: 176 THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 +RA L+QRFI+T ++ T P GLP RV + GIS+LP LQ L A+ + + Sbjct: 187 IGIDDY-WNNRAELHQRFIDTAQALTERPAGLPPRVVVFGISSLPQQMLQVLDAIKGYTQ 245 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 I L NP +Y+W DI D + + ELP N D + Sbjct: 246 ILLCVHNPSQYHWADIVDGKEALRQAVKASSRLKHKPELPDDP---------NDDELHQL 296 Query: 296 GNPLLASWGKLGRDYIYLLSDLESSQE---------LDAFVDVTPDNLLHNIQSDILELE 346 +PLLASWGK GRDYI LL + + L+ F D+LL +Q DIL L Sbjct: 297 AHPLLASWGKQGRDYIRLLDLYDETLAKQEAFNTIKLELFEPHNTDHLLAQLQDDILNLR 356 Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 +R P + D S+ FHVCHSPQRE+EVLHD+LL +DP L PR Sbjct: 357 PVQE--------TRELWPTP-NTADKSLQFHVCHSPQRELEVLHDQLLDAFAKDPELKPR 407 Query: 407 DIIVMVADIDSYSPFIQAVFGSAP------ADRYLPYAISDRRARQSHPVLEAFISLLSL 460 D++VM+ D+++Y+P+I AVFG R +PY I+D+ R P++ A LL + Sbjct: 408 DVMVMLPDVNTYAPYIDAVFGRYHNRFGERDPRAIPYTIADQGERHQRPLMIALELLLQV 467 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA-T 519 RF D+ LL VP + RFD++++ L L++WV E+G RWG++ + + +PA Sbjct: 468 DQLRFTQTDLFNLLSVPAVQQRFDMSDDDLPQLKRWVKEAGARWGLNAEQRAQFYMPAAE 527 Query: 520 GQHTWRFGLTRMLLGYAMES-------AQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 ++W FGL RM+ GYAM W +V PY E +GL A LVG LA ++ L Sbjct: 528 ETNSWWFGLKRMIAGYAMGDLADVNLENDSPWANVEPYTEVAGLSAALVGCLADVVRTLE 587 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL-IEQQWQAIIAEGLGAQYGDA 631 W + E L EW+ +L FF + +++ + + + + + A Sbjct: 588 QWWQRAQGEHSLPEWVTQGEWLLEQFFEAEEDSDRLLLAKLSDELYQLRDICVEADNESQ 647 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + L + +D +R+DQ+ ++QRFLAG VN TLMPMR+IPFK VC+LGMN+ YPR Sbjct: 648 LRLPIFKDAWLERVDQQNLNQRFLAGAVNFATLMPMRAIPFKYVCVLGMNESDYPRSTPR 707 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 + FDLM+ + + GDRSRRDDDRYLFLEA++SA+ Y+S++G S +DNSER PSVLV +L Sbjct: 708 VDFDLMTDRYRPGDRSRRDDDRYLFLEAMLSARDCFYLSWVGYSAKDNSERTPSVLVAQL 767 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY--QPGERQSYAREWLPA 809 D++ Q + + LT +H PF+P + + + +YA EW A Sbjct: 768 RDHLQQGWEVDINS--------------LTVVHKLQPFNPYYFNQEDSDYFTYASEWAQA 813 Query: 810 ASQAGKAHSEFVQPLPF--TLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 A + S L T+ + ++RF P R +F RL F ++ D+ Sbjct: 814 HQGAVASTSRTASETAADDELERTLSINDIKRFIEEPARLYFNWRLDTYFSRNSEDLDDS 873 Query: 868 EPFILEGLSRYQINQQLLN----ALVEQDDAE----RLFRRFRAAGDLPYGAF----GEI 915 E F+++ L + + +L++ AL+ E + R + G L GA G Sbjct: 874 EAFVMDNLQSWSLTTRLVDAGKKALLNGAGIEASLLKELNRIKREGALGIGAIAEQNGLQ 933 Query: 916 FWETQCQEMQQLADRVIACRQPGQ-SMEIDLACNGVQITGWLPQVQPDG-----LLRWRP 969 E + ++ + + + +G+ I + + + + Sbjct: 934 LLEQSQEILETYQQSIAGYSGVNEFPETVFFEHSGLTIDDTVTGLHSNENGERLWVVTSA 993 Query: 970 SLLSVAQGM----QLWLEHLVY----CASGGNGESRLFLRKDG--EWRFPPLAAEQALHY 1019 S ++ G W Y +RL + G + + P+ AE A+ Sbjct: 994 SNIAAKNGKGINSGGWKHASAYYLGLLLLNLQKPTRLLIVSKGGCQLQVAPVPAELAVQQ 1053 Query: 1020 LSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQK 1066 L Q++E P + + G WL D L ++ QK Sbjct: 1054 LEQILELVALSAQQPQPMHLDVGMTWLSAMDKNSQDEALAHEAARQK 1100 >UniRef50_C7LVF8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF8_DESBD Length = 1064 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 351/1133 (30%), Positives = 551/1133 (48%), Gaps = 93/1133 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 ++ SNRL+ L L+ +++ DP EPE ILVQS GM +W+ M L+++ G+ AN Sbjct: 4 FLLHASNRLENLAELLAEVLKT--PLDPMEPETILVQSGGMQRWVSMQLARRHGVCANTR 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 FP P F + + + ++P+E +++ M W++ LL LL+ +F L Y+ +DS+ Sbjct: 62 FPFPVGFAYALCRELRADLPREYPLSQERMLWRITHLLRGLLDEPEFAPLARYVQEDSE- 120 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWET-----GHLVEGLGEAQAWQAPLWKALVEYT 176 + QL+ + A FDQYL++RP+W A+WE L+ G ++AWQA LW+ L+ Sbjct: 121 LRSVQLAERIAYHFDQYLIFRPEWAARWENHEPSGNFLLPGHVASEAWQARLWRELIRDM 180 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 HRA L +R I +LE T+ P LPSRV + GI LPPVYL L+AL +H ++ Sbjct: 181 GG-----EHRAALLRRAIASLEKGTSLP-DLPSRVCVFGIPTLPPVYLDLLKALSRHSQV 234 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 H+ +PC+ YWGD+ L R+RR ++ E E+A Sbjct: 235 HVFLLSPCQKYWGDL--------LTHRERRRAYRAGEHASPERPEDAMP----------- 275 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 LA G +G++++ LL + + + E + + D +L +Q+D+L+L+ R Sbjct: 276 ---LAGLGAVGKEFLELLMERD-ALETGLYEEPVGDTMLGQLQADLLDLDVREEKT---- 327 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 D D+SI H CHSP RE+E+L D +L +L +D +L+P+DI+VM DI+ Sbjct: 328 -----------DFSDTSIQVHCCHSPLREMEILKDLILDLLAKDTSLSPQDILVMNPDIE 376 Query: 417 SYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y+P IQAVFG+A D +P++ISDR+ ++ + F+ LL RF + V ALL+ Sbjct: 377 RYAPVIQAVFGTAGEDG-IPFSISDRKPTKAAETIRLFLELLEFGQHRFEASRVCALLEA 435 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 P + R + + + +WV SG+RWG+D D R+ L GQ+TW GL+R+ LGY Sbjct: 436 PPVRQRLGLDASDTQRVLEWVRASGVRWGLDLDFRRKAGLGDFGQNTWESGLSRLYLGY- 494 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 M A + P EL+G + + + +L L R +W +L+ Sbjct: 495 MTGAADPLGGIAPLALRGSAEQELLGRVTAWIDELATLWSRLRDTRTPADWQDCLLWILD 554 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 AFF D + I + + + + L L+R +RLD+ FLA Sbjct: 555 AFFPQDPAQAEHLLAIRKAVTDLTRDMGDFEADARTMLYLIR----KRLDESGGESGFLA 610 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLF 716 + C L PMRSIPF+V+CL G+ +PRQ PLGFDLM+ +P+ GDRS R+DDRYLF Sbjct: 611 SGLTFCGLKPMRSIPFRVICLTGLTSTAFPRQDIPLGFDLMAARPRPGDRSHREDDRYLF 670 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 LE++ISA+ L ++Y G S DN E PSVLV EL+D++ + + G Sbjct: 671 LESIISARDNLILTYPGLSQSDNLEAPPSVLVSELLDFLDRGCTVDG----------LTP 720 Query: 777 KAHLTCLHTRMPFDPQNYQPGER-QSYAREWLPAASQAGKAH--------SEFVQPLPFT 827 + H F P + G SY+ + AA H + ++ Sbjct: 721 SEAIVFKHKLQAFHPDYFSAGSPIFSYSAQNRDAAQALFAEHQSRQFFPEASTLEGAHAE 780 Query: 828 LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI-LEGLSRYQINQQLLN 886 + +E L RF HP R + L+++ + + D EP GL Y Q LL Sbjct: 781 QEIEIDIEELTRFLTHPCRHLLRA-LRIDPTGGEDDFLDEEPLATPTGLEAYGPLQDLLR 839 Query: 887 ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEID-- 944 +++ A L A LP G G C +++ LAD+ A + + +D Sbjct: 840 TALDE-PAANLEGLLLAWQLLPPGQAGTDASRKLCSQIRALADQARAVIGDEKPLRLDLK 898 Query: 945 LACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG 1004 L + +TG + + D + RP+ + ++LW+ HL A+G +S D Sbjct: 899 LPLGRITLTGRID-LHGDRFVTCRPAKTKSSDMLRLWVRHLAASATGHAVQSMHIGTDD- 956 Query: 1005 EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 FP A A + L L+ Y GM AP+ + P + A+ + + + + Sbjct: 957 --CFPAPEAPNARNLLEGLLRLYTRGMRAPIHLFPRTSLAFAEARFTGRKPKERPE---- 1010 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 A + ++ +EG MV E DD L+R P+ E + ++ P+ Sbjct: 1011 --ALMQAMRQWEGGYMVSPERDDPHLAFLFRDTEPD-WERFADVAEEIYGPIL 1060 >UniRef50_C5TL47 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Neisseria RepID=C5TL47_NEIFL Length = 1099 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 315/1137 (27%), Positives = 522/1137 (45%), Gaps = 99/1137 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M ++ S+RL+ L + I + LD E ++VQS GM ++L + +++ G+AAN+ Sbjct: 1 MFYLFQSDRLESLAEMCARIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLER--EDFTLLR----HY 114 F LPA W + +++P++P S F+ + M W+L+ L + + ++ +R Y Sbjct: 61 KFSLPAGLAWQLMRKLVPDVPPLSPFSPEVMRWRLLDLFRSEMFQTAPEYENVRLKLESY 120 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE 174 L + +QL+ + AD+FDQYLVYRPDW+ W+ G L+ GLG+ + WQA LW+ Sbjct: 121 LYSSASA--DYQLAGQMADIFDQYLVYRPDWIDAWQAGKLL-GLGDDEDWQARLWR---- 173 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 Y Q HR L+++ + L+ LP R+F+ GIS + P+YLQ L + KH Sbjct: 174 YLDDGSQSALHRVALWEKLLAQLDK-----SVLPQRLFVFGISTMAPMYLQLLHQISKHC 228 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++ + NP YWG++ D A + K + Sbjct: 229 DVFVFALNPSSQYWGEVIDEAQILKR--------------------------GDEADLSQ 262 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVN 354 G+PLLAS GK GRD+ LS++E+ Q++ + + D LLH +Q DI L + Sbjct: 263 AGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQKDIQNLIMPSERLYQ 322 Query: 355 IEEFSRSDNKRPLDP----------------LDSSITFHVCHSPQREVEVLHDRLLAMLE 398 EE + + D S+ HSP RE+++L + L +L+ Sbjct: 323 QEEGEAGGQQALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQ 382 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP-ADRYLPYAISDRRARQSHPVLEAFISL 457 +P P DI V+ +I+ YSPFI+AVFG A + LPY+ISD + + P+L A Sbjct: 383 NNPDWQPHDIAVLTPNIEPYSPFIEAVFGQAHAGSQALPYSISDVKLSRRQPLLYALAQT 442 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L L +SRF + VL LL+ ++ RF ++EE + L + V + WG+D Sbjct: 443 LDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHETVAGLNVHWGLDQTMRD----G 498 Query: 518 ATGQHTWRFGLTRMLLGYAME-SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 TW+ + R+ LG+ + G W+ V + + + ++ A + L Sbjct: 499 KDNLFTWQQAVERLALGWMLPEGGNGMWRGVSAWYSNVNQL-DVFSGFAEFIRTLADMAA 557 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 +E W+ CRD+L F PD + + A EQ E A++ +P Sbjct: 558 QWQAPANVEIWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKT 617 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 + + + LD E + FL+G + C+++PMRS+PFK+VCLLG+NDG +PR FDL Sbjct: 618 VIRHIRRFLDSESQA-GFLSGGITFCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDL 676 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 +++ PK+GDR+RRDDDRYLFLEALISA++ LY+SYIGR I++++E PS L+ EL+D I Sbjct: 677 IAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDAEFAPSSLISELLDTIA 736 Query: 757 QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE----RQSYAREWLPA-AS 811 +S + H F + +Q S +++ A Sbjct: 737 A----------MTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQ 786 Query: 812 QAGKAHSEFVQPLPFTLP-ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPF 870 +A F++ L P +T+ L FW +PV+ + + L + D EPF Sbjct: 787 PPAEAQPFFLEALSQEEPGKTIHQGELVSFWRNPVKVWLKKNLSWDQPYLDGAWESAEPF 846 Query: 871 ILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADR 930 +I L+A + +D E R A +P G G W+ Q Q + D Sbjct: 847 E--PQHEGRIADAYLDARRKGEDFEDTAIRLNAESLMPVGELG-GLWQKQYQISAKNVDT 903 Query: 931 VIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS 990 + S + + + + G + + G + + + + LEHL++CA Sbjct: 904 ELIRSNKRPSEPYEESFGDLVLQGTIGNLYECGRIVFLNQKDNAPNRIARLLEHLIFCAV 963 Query: 991 GGNGES---RLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLK 1047 + + + + E A L + + +R G + PL ++ A + Sbjct: 964 APKSVANRQTHIVSLGQTETYAAIGQEAARELLKEWLVYFRIGQNTPLPFFAKTSLAAAE 1023 Query: 1048 TCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEA 1104 ++ A K + + GN M +G+ + + ++ L ++ Sbjct: 1024 EYNKKED---------WDAALRKAHEVFNGNKMSKGQKEYTEVKLVFGHLEESPLDE 1071 >UniRef50_P57528 Exodeoxyribonuclease V gamma chain n=4 Tax=Buchnera aphidicola RepID=EX5C_BUCAI Length = 1070 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 304/1118 (27%), Positives = 569/1118 (50%), Gaps = 51/1118 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SN L+ L I+E + + FE E+ + + + Q+L + +++K GI+AN Sbjct: 1 MFTIYKSNSLNTLLLKAYHIIEEKPFSNIFEKEIFIYDNKVLFQYLNIFIAEKKGISANF 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F P FIW +F +L + ++ F + W+++ +L E+ + + + Sbjct: 61 KFYHPNDFIWKLFKIILSKKELKNIFTHSMIIWEIIKILDNKKFFENCSKKKDMIKKFK- 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 S A +F +Y++YRP+W+ QWE + + + WQ LW ++ T ++ Sbjct: 120 ------FSFLMASIFKKYILYRPEWINQWEIEKNISIFDKNEQWQIKLWMEIIHNTKKIN 173 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q H ANL+ + ++ LP R FI ++ P Y++ Q + + +I+ L+ Sbjct: 174 QSSDHFANLFYNIQKIIKEKKIKKKYLPKRFFIISSFSMNPSYIKIFQNISIYTDIYFLY 233 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 P + + +D ++ E L + L+ Sbjct: 234 ITP-----------------FKKNIFNFIQDNKIFTDIKIEKKNILND---------SLI 267 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 WG+ Y + + + ++ ++ F +LL I+++ + Sbjct: 268 TLWGQYEEIYYFYILKSKKNKVINCFKKNKNKSLLSQIKNNFFN------------DSEF 315 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + KR L+ D SI+ ++C + + E+EVL+++LL L E+ ++ P DI+V +D+Y Sbjct: 316 TRKKRFLEISDHSISINICFNKKNEIEVLYEKLLIFLNENSSIKPGDIVVTSFSLDTYIS 375 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 I +F S + +P+ I+ + ++ + +L +F +L+L +SRF +E++L LLDVP +A Sbjct: 376 SINLIFQSIDNKKTIPFFIAKKSSKTTEIMLWSFKKILNLSNSRFENEEILELLDVPEIA 435 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 +F+ +EE ++ L W+ E+ IRWGI++ + L P Q+TW +G+ ++LL YAM Sbjct: 436 EKFNFSEEEIKILYHWIEETNIRWGINEKHKNYLLFPKNKQNTWFYGIEKLLLSYAMNDT 495 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 + W VL +G +EL+G L S + L W++ L++ + L W + D+++ FF Sbjct: 496 EKIWNGVLSCSFINGSRSELIGKLISFIKILEKWQKKLSKLQYLTYWRSLYSDLVSDFFQ 555 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 + + E ++ +I+++W II + L + Y + +++L+ + + FL G VN Sbjct: 556 NNTKIEKSIQIIQKKWIEIIDDSLSSNYLKKISINILKKIFFYKYYDNN-HEIFLPGVVN 614 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 C + IPFKV+C++G + P+ F+L+ + P GD + YLF+++L Sbjct: 615 FCYPDSVCYIPFKVICMIGTDHTSIPKTNYLDNFNLLKKYPLIGDINLYQKYSYLFVQSL 674 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 A++ YISYIG S++D S+ PS+LV +L++YI + GD+ L+ E+ ++ +L Sbjct: 675 SCAEKYFYISYIGYSVKDESKVHPSILVDQLLNYITLNFCFIGDQNLSYKENSKKITKYL 734 Query: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 H + F Y+ +S+ ++ + + + + L + L+ L F Sbjct: 735 CKKHKKQFF----YETKNIESFIQDDIKNDFKHTEKNISHKNLLKKNTDNEINLKDLINF 790 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 W HP+R F+ L++ R + +I TE F++ L+ ++I +LL+ ++ + +L++ Sbjct: 791 WKHPIRYFYNSHLKIKIRQKKQKINTTETFLVNPLNSFKIKNKLLDYIIHNKNITKLYQH 850 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ 960 + +G LPY FGEIFW +EM+ +A++V+ R + +I+L QI G L ++Q Sbjct: 851 YLLSGKLPYHFFGEIFWIKNIKEMKLIANKVMQYRIEKEEKKINLNIEKYQIYGVLSEIQ 910 Query: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 GLLRW+ S + + + LWLEHL+Y GG G+S++ K W F L + +A YL Sbjct: 911 STGLLRWKTSSIRYSDRIALWLEHLIYSILGGCGKSKIIGYKSQIWSFSSLNSHRAHSYL 970 Query: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 + I+GY +GM PL L +SG +WL YD +N+ + +D T KA K L ++G+ Sbjct: 971 LEYIKGYIKGMKEPL-FLTKSGASWLDQVYDERNNCIKNDYYTKIKAYKKLLYTWKGDNY 1029 Query: 1081 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 GE +D + ++ + ++ I E ++++L+P+ + Sbjct: 1030 TEGEQEDYYLKKTITISNKKNIKKICESAEKWLIPILK 1067 >UniRef50_C8R0F3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0F3_9DELT Length = 1205 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 388/1197 (32%), Positives = 571/1197 (47%), Gaps = 104/1197 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L +Y SNRL+ L + ++ + P E ++VQS GMA WL +L+Q+FGI A+ D Sbjct: 25 LILYRSNRLEALLDCLAASLQDDPPP-PLSSECVVVQSRGMATWLGQSLAQRFGIWAHPD 83 Query: 62 FPLPASFIWDMFVRVLPEIPKESA-FNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FP P FI + E + F+++ ++ ++ LLPQLL R +F LR YL +D Sbjct: 84 FPHPRRFIERLLRAAAGEEAATATSFSRELLTLAILELLPQLLSRPEFAPLRRYLEG-AD 142 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K QL+ + A +FDQYLVYRP+ + WE + WQA LW+ L + Sbjct: 143 DWKSLQLAERIAYVFDQYLVYRPEMVLAWEDRQAEP--EDDDRWQALLWRQLAQRFGS-- 198 Query: 181 QPRWHRANLYQRFIETLESATTCPPGL-PSRVFICGISALPPVYLQALQALGKHIEIHLL 239 A L+ + L+ P L P+RVF+ GI+ LPPVYL L K + HLL Sbjct: 199 -----PARLFHQAKGRLQQGDLAQPELLPARVFLFGITTLPPVYLDLLNEAAKLLPCHLL 253 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 P R YWGDI P +LL R P +++ D G+PL Sbjct: 254 LFAPARDYWGDILSPKAANRLLLRHH---------PPAANADEQHGRDFEHLHLDTGHPL 304 Query: 300 LASWGKLGRDYIYLLSD---LESSQELDAFVDVT-----PDNLLHNIQSDILELENRAVA 351 LASWG++GR++ +++ + D FV+ ++L +Q DILEL+ A A Sbjct: 305 LASWGEVGREFQHIMEERAEYLQPAHGDCFVNPATVEVAGASILARLQRDILELQEPAPA 364 Query: 352 GVNIEEF----SRSDNKRPLDP-----LDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 + +N+ P D SI H CHSP REVEVL D+LLAML+ + Sbjct: 365 AADQRNSAGDSPNPNNRLPEQAAGAVDHDHSIVIHACHSPLREVEVLQDQLLAMLDVE-G 423 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLP 461 PRDI+VMV DI++Y+P I+AVF DR Y+P+ ++DRR + P+L+A ++LL L Sbjct: 424 YRPRDIVVMVPDIETYAPLIEAVFRRPTGDRRYIPFRLADRRVSREAPLLDALLNLLDLA 483 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 R VL L + F + L+ L QW+ + +RWGID+++ R + P Q Sbjct: 484 RGRLPLSQVLDFLAREPVRQGFGLDGRQLQRLEQWLEQLRVRWGIDEEHRRRHDQPPDRQ 543 Query: 522 HTWRFGLTRMLLGYAMESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +TWRFGL R++LGYA+ +LP+D+ G A+L G L L + + Sbjct: 544 NTWRFGLDRLILGYALPGEDRYLVAGILPFDDIEGQDAQLAGVLLQFSQALFSLVDEVRE 603 Query: 581 ERPLEEWLPVCRDMLNAFFLPDA----ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 + + W+ + R + AFF P+ + + A++ E A + L+ Sbjct: 604 AKTMARWVELVRRAMAAFFAPEERAAAGEQWQRQSLRDALVALLQESERAGLERPLELAA 663 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 L RLD+ ++ FL G + CT++PMR+IPF VVCLLGMNDG +PRQ P GFDL Sbjct: 664 FLRLLRARLDEAGMAAGFLEGGLTFCTMLPMRTIPFPVVCLLGMNDGDFPRQDNPAGFDL 723 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 ++ P+ GDRSRR DDRYLFLE+L+SA+++LYISY+GRSI+DN+E PS LV EL+D + Sbjct: 724 LAAAPRPGDRSRRRDDRYLFLESLLSARRRLYISYVGRSIKDNTELPPSPLVDELLDCLE 783 Query: 757 QSHYLPGDEALNCDESEAR---------VKAHLTCLHTRMPFDPQNYQPGE--RQSYARE 805 + + + + + +A H PF P+ +QP + +YA E Sbjct: 784 RMPEAVAESTADSEGTGEEERLADRRRRTRARFVVNHPLQPFSPRYFQPDQPLLFTYAAE 843 Query: 806 WLPAAS-------QAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFR 858 + P S Q G P L L RF+ +P R + + L ++ Sbjct: 844 YAPVPSTRPVGTGQGGPDSPRPKAAATAPAPGAPTLAELHRFFRNPSRWYAEHHLGLSLP 903 Query: 859 TEDSEIPDTEPFILEGLSRYQINQQLLN------ALVEQDDAERLFRRFR----AAGDLP 908 + PD EP LE L Y++N+QLL A V + + RR R A G+LP Sbjct: 904 PGEEARPDREPVFLERLDAYRLNRQLLQDPASVLAAVNAGEDDEAGRRLRHLLAARGELP 963 Query: 909 YGAFGEIFWETQCQEMQQLAD--RVIACRQPGQSMEIDLACNG-VQITGWLPQVQPDGLL 965 ++ +A +P ++ +DL + + G L GLL Sbjct: 964 LAGAAAPALAEAMAAVEPVAAFLATNPAGRPLPNLPLDLELGQHLYLRGELRDRAELGLL 1023 Query: 966 RWRPSLLSVAQGMQLWLEHLVYCASGGNGESR---LFLRKDGEWR-------FPPLAAEQ 1015 RWRP + WL+HL CA + L R G+ F +A EQ Sbjct: 1024 RWRPGRSKPVFLLLAWLDHLALCARAPADQDHQCLLVARGKGQDEGQADIRIFRAVAQEQ 1083 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A L+QL++ +R G APL P AW Y A+ D ++AR LQAY Sbjct: 1084 AQSLLAQLLDLWRRGQEAPLPFFPACSHAWSDKIYQAKES---DPAKLCRQARQAALQAY 1140 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTP--------------ETMEAIVEQSQRFLLPLFR 1118 G G+G D + ++++ P E ++ LP+ R Sbjct: 1141 HGGDFHPGDGADPYVGLIFQEADPAGEWSEDDSSGPGGSDWEEFTAVAETVYLPMLR 1197 >UniRef50_B5JRL4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL4_9GAMM Length = 1150 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 388/1185 (32%), Positives = 575/1185 (48%), Gaps = 135/1185 (11%) Query: 15 ALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-----FGIAANIDFPLPASFI 69 L L P E+ LVQS GMAQWL++ ++ GI A F +P+ F+ Sbjct: 3 KLAINWQAEHPLP-PLAEEVFLVQSNGMAQWLKLNIAADREDGGLGIQAGQRFEMPSRFL 61 Query: 70 WDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK---RKL 124 W + VL ++P S ++K ++ W+LM LLP+L+E + F +LRHYLT D + RK Sbjct: 62 WSAYRAVLGNDKVPTASPYDKATLQWRLMRLLPELVEDDAFRVLRHYLTSDDETVATRKR 121 Query: 125 FQLSSKAADLFDQYLVYRPDWLAQWET---------GHLVEGLGEAQAWQAPLWKALVEY 175 +QLS + AD FDQY VYR DWL W G L WQA LW+ L++ Sbjct: 122 YQLSQQLADTFDQYQVYRADWLEDWAQQRDRLSRFGGQQARALPAEDHWQAQLWRRLIDD 181 Query: 176 THQLGQPR---WHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 P R +++RFI+ L S LP R+ + G+S+LP L+AL A+G Sbjct: 182 IETDSTPSHSVLSRGQIHRRFIDALHSGRDYSAYLPPRITVFGLSSLPYQTLEALAAMGL 241 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE 292 H ++ L+ NPC++YWGDI+ + P + ++A +S+ E Sbjct: 242 HTQVMLMVHNPCQHYWGDIR-------------------QHAPTRQAVKDAVAAEHSESE 282 Query: 293 QDVGNPLLASWGKLGRDYIYLLSDLESSQE-------LDAF---VDVTPDNLLHNIQSDI 342 Q PLLA+WG+ GRDY+ LL++ + ++ +D F D LL Q I Sbjct: 283 Q----PLLATWGQQGRDYLQLLAEFDQPEDYQQHFEKIDVFNSPADNASPTLLQQWQHSI 338 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 +L+ ++ E +K L+ D S+ FH CHS QREVEVLHD+LL E +P Sbjct: 339 YDLQ-------SLPEEKNILSKDSLE-GDRSLRFHSCHSAQREVEVLHDQLLDAFERNPA 390 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFG-------SAPADRYLPYAISDRRARQSHPVLEAFI 455 L P+D+IVMV DI Y+P I+AVFG RYLPY ISD + ++P + A Sbjct: 391 LRPQDVIVMVPDIQRYAPHIEAVFGLYKPRTGQERDPRYLPYTISDSSLKSANPTVNAIE 450 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE 515 LL RF D+L LL+ P L RF + L+QW+ ++G+RWG++ + + + Sbjct: 451 QLLHSDQLRFSLSDILGLLESPALQRRFGLENSDPSLLKQWLEQAGVRWGLNREQRAQHD 510 Query: 516 LP--------ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASL 567 LP A +TW FGL R+LLGY S++ W + P S AE +G L L Sbjct: 511 LPSESSEPSEALSANTWAFGLNRLLLGY---SSEARWNGIEPSAPFSNSDAEAIGALWRL 567 Query: 568 LMQLNIWRRGLAQERPLEEWLPVC-RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGA 626 + L+ + + L + +W + +L F D + + + A Sbjct: 568 INTLDGFSQSLQHAKTPSQWSQFIGQTLLEFFDSDDDSDAPLFDALNHALEQWLDACQRA 627 Query: 627 QYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 + DA+PLS++R+EL LD ++QRFLAG +N +LMPMR++PFK+VCLLG+NDG YP Sbjct: 628 DFNDAIPLSMVREELLPALDDSGLNQRFLAGCINFASLMPMRAVPFKMVCLLGLNDGDYP 687 Query: 687 RQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 RQ FDLM + + GDRSRRDDDRYLFLEA +SA++ LY+S++GRSI+DNS R Sbjct: 688 RQQPRQDFDLMRRREHYRPGDRSRRDDDRYLFLEAALSAREALYLSWVGRSIRDNSVRAQ 747 Query: 745 SVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQN---YQPGERQS 801 S+L+ +L D I L D + + +LT H P+ Q + + Sbjct: 748 SILLAQLRDDIAARFQLDND-------AHPTLLEYLTLEHPLQANSPRYLDTLQSAQYFT 800 Query: 802 YAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 YAREW + + + ++ + +T+ L L+ P F + RL++ F D Sbjct: 801 YAREWFDEPRSSDRNTT--LKAIDSNEAQTLSLSDLRLLLRQPCDVFLRQRLKIAFDDGD 858 Query: 862 SEIPDTEPFILEGLSRYQINQQLLNALVE-------QDDAERLFRRFRAAGDLPYGAFGE 914 + D EPF L+GL RYQ+ Q LL + +R R+ ++G LP G FG Sbjct: 859 DSVLDHEPFSLDGLDRYQLGQSLLEDGAQDLSPSGLNAALDRAKARWLSSGQLPPGEFGL 918 Query: 915 IFWETQCQEMQ----QLADRVIACRQPGQSMEIDLACN-GVQITGWLPQVQPDG------ 963 E + ++ + ++ A QP I LA G + W ++ Sbjct: 919 TLIEQRLDDVADTLSRYREQSQALIQPLPPQAIVLADELGWTLEDWTRELASTASGTPHY 978 Query: 964 -LLRWRPSL------LSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQA 1016 + P L + + WL HL S G L L ++G R P+ AEQA Sbjct: 979 YQINLTPGTLRSGRQLKYHRLLNDWLNHLAAS-SLGYSLHTLILCEEGGVRISPMPAEQA 1037 Query: 1017 LHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYE 1076 HYL QLI YR ++ PL + E+G A+ T A+ + ++AR++ AYE Sbjct: 1038 AHYLKQLISAYRNALAQPLPIQLEAGCAYAHTLATAKANHE-------EQARSEAQNAYE 1090 Query: 1077 GNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 + + ++ LW E + + PL Q Sbjct: 1091 SRLSASQQRCYASFEVLW-----EHSGEFLRWMETLYQPLVEHTQ 1130 >UniRef50_Q1QYD4 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYD4_CHRSD Length = 1210 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 396/1208 (32%), Positives = 568/1208 (47%), Gaps = 100/1208 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M V H+N L+ L L ++ R R P PE LVQS GMAQWL++TL++ GIAA++ Sbjct: 1 MFSVIHANHLEDLGTLALDVIRRHR-QPPLVPETFLVQSNGMAQWLRLTLAEADGIAASV 59 Query: 61 DFPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLLPQLLERE-------DFTLLR 112 DFPLP+SF+W + VL + IP++S F+K ++W+LM LL + L+ E + LR Sbjct: 60 DFPLPSSFVWRAYRAVLGDDIPEQSPFDKTPLAWRLMALLERCLDPETSPDDPTCYAPLR 119 Query: 113 HYLTDDSDK-------------RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG-L 158 YL ++ + R+ + L+ + ADLFDQYL+YRP+W+ WE G L Sbjct: 120 DYLQGEALEASPLPGAAEEARERRRWHLAVRLADLFDQYLIYRPEWIEAWERGEHAPADL 179 Query: 159 GEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA 218 + Q WQ LW+AL+E HRA L++RF++ P +P RVF+ GISA Sbjct: 180 PDDQRWQPALWRALIEDA-PAAAREHHRARLHRRFLDAARGLRKRPRDVPPRVFVFGISA 238 Query: 219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFR 278 LP L+AL AL +++ L+ NPCR+YWGDI K R S RE Sbjct: 239 LPAQTLEALHALSGVVDVFLMIANPCRHYWGDIVSDRDAIKRAG--RLSSQARREQEARH 296 Query: 279 DSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ----ELDAFVDVTPDNL 334 + + NPLLA WG GRD+I L + ES + E D F D+ P+ Sbjct: 297 PEAPWLAELDEEALHLHANPLLAGWGTQGRDFIVGLYEFESDRGFDLETDVFRDMAPE-- 354 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 + ++ E R R + D S++ HSP REVE+LHDRLL Sbjct: 355 -QSPTLLQQLQQDVLELVHPGERARREGGPRRIAEDDESLSLVSAHSPLREVEILHDRLL 413 Query: 395 AMLE----EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPA--DRYLPYAISDRRARQSH 448 A E L PRDIIVMV DID Y+P I+AVFG P R++P+ I+D+ A ++H Sbjct: 414 AAFERAEAAGQPLRPRDIIVMVPDIDRYAPCIEAVFGQLPPSHPRHIPFTIADQVASEAH 473 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 P++ + LL LP+ R +VL L+VP F I E L LRQW+ SG+RWG+ Sbjct: 474 PLMALALLLLELPERRLTVSEVLDALEVPAFRTAFAIDEAELERLRQWLAGSGVRWGLSA 533 Query: 509 DNVRELELPATGQHTWRFGLTRMLLGYAMESAQ-----------------GEWQSVLPYD 551 ++ L PA G+++WRFGL+RMLLGYA+ G++Q ++PY Sbjct: 534 EHRDSLGFPALGENSWRFGLSRMLLGYAVGEPSAGGARDDSEDSLGHAPSGDFQGIVPYA 593 Query: 552 ESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAA-MT 610 E GL A+L G +A+LL L L + WL + + A P E M Sbjct: 594 EVGGLEADLAGRVATLLSTLEQQCAALGERLTPMAWLGRLQALFAACLQPGTADEHDVMA 653 Query: 611 LIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSI 670 ++ + A + + V L ++RD L LD+ ++QRFLAG VN TLMPMR+I Sbjct: 654 RLDAALARWAQQCRHADFEEPVGLGVVRDALRAELDEGGLAQRFLAGKVNFATLMPMRAI 713 Query: 671 PFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYIS 730 PF+ V LLGMNDG YPR P FDLM+ +P+ GDRSRRDDDRYL LEA++SA+ KL +S Sbjct: 714 PFREVYLLGMNDGDYPRVRQPQDFDLMATRPRPGDRSRRDDDRYLMLEAMLSARAKLTLS 773 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD 790 ++G ++DN+ R PSVL+ EL+D + Q +P D A + D AR+ L H PF Sbjct: 774 WVGHDVRDNTPRPPSVLIGELLDTLEQGWDVPEDGAGSRD---ARLARRLIETHPLQPFS 830 Query: 791 PQNYQPGE-RQSYAREW--LPAASQAGKAHSEFVQPLPFT-----LPETVPLETLQRFWA 842 + ++ + R +Y W L A + A + P P E + L LQR Sbjct: 831 RRYFERDDPRFTYEASWEALYATPEDTAAATADGAPSPDASMASLPDEPLSLGDLQRVLR 890 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFR 902 P + RL V++ D EPF L+GL + + ++LL+ + R R Sbjct: 891 RPWTVYL-GRLGVHYVDPHVPDEDNEPFALDGLEDHGLKRELLDGARGGVALASVAERLR 949 Query: 903 AAGDLPYGAFGEIFWETQCQEMQQLADR----VIACRQPGQSM-EIDLACNGVQITGWLP 957 AG LP FGE E + + + + V AC + + + + L Sbjct: 950 LAGRLPTAGFGEALIEPRLARLSRQVESWRRDVAACTAASPFLARFQGGASALTLEARLD 1009 Query: 958 QVQ---PDGLLRW--------------------RPSLLSVAQGMQLWLEHLVYCASGGNG 994 V DG W + V + +L L+ A+ Sbjct: 1010 DVFAAPEDGAAPWCLMTLEPGHYGHLKVEGTGPHRHVGKVHRLYGGYLRWLLANATLEAP 1069 Query: 995 ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQN 1054 S + +D P +AA A L+ ++ + P + E K Sbjct: 1070 CSWTAVFEDRCLSLPGMAAATARQQLATWLDAWARAYRMPWPAIGEVAQEIWKRVPRETC 1129 Query: 1055 DAMLDDDSTLQKARTKFLQAYEGNMMVRG---EGDDIWYQRLWRQLTPETMEAIVEQSQR 1111 +A+ + R + YE + D +LW V S Sbjct: 1130 EALQAGEPLESGLREALIARYETDAYAGPAALRARDGALGQLWPDFAAFEAAGGVAASLT 1189 Query: 1112 FLLPLFRF 1119 PL Sbjct: 1190 LYAPLLDM 1197 >UniRef50_A4B914 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B914_9GAMM Length = 1080 Score = 861 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 330/1136 (29%), Positives = 538/1136 (47%), Gaps = 98/1136 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAA 58 ML Y SNRL+ L +++ ++ +P + +LVQ GM WL M L+++ + Sbjct: 1 MLYTYPSNRLENLVLVLDTLMNNIG-SEPLTADAVLVQHPGMQHWLSMELAKQSSNQLCM 59 Query: 59 NIDFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL--RHY 114 NI +PLP + WD+ +L +P+ S + ++ ++W+L LL Q + +L Y Sbjct: 60 NITYPLPVRYFWDLIRLILGPDRVPERSVYTREILAWRLYHLLQQDAITANPLMLEPNRY 119 Query: 115 LTDDS---DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKA 171 + + FQL+ + ADL++QYL+YRPDW+ W+ A+ WQA LWKA Sbjct: 120 WQEQPAYLQDSRRFQLAEQLADLYEQYLMYRPDWIEHWQE-------SPAEHWQALLWKA 172 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 LV+ + H L + L LPS F+ GI++L P++L L L Sbjct: 173 LVD------EDPQHPLALMREASRRLSHPAQP---LPSHFFVFGINSLAPIWLDFLSHLA 223 Query: 232 KHIE--IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 + + IH+L+ NP +W D + K + R + + ++A + Sbjct: 224 RSTDTDIHILYLNPSAEHW----DQLHTEKQALKTRLRQQQSAQQRASWIDDDALFTDEA 279 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRA 349 D NPLL S G+ G+ ++ LSD ++ + AF + L +Q D+L L + Sbjct: 280 D------NPLLTSLGQQGQVFVRQLSD-KADYDAQAFSAPEAETQLQTLQRDLLTLHDAR 332 Query: 350 VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDII 409 ++ D ++ HS REV+ LHD LL DPTLTP+D++ Sbjct: 333 SQPHTLDH-------------DGTLMISSAHSAFREVQGLHDWLLHRFNADPTLTPKDVL 379 Query: 410 VMVADIDSYSPFIQAVFGSAPAD-----RYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 VM +++ Y+PF+QAVF + A+ LP +I+DR + + P + AF+ LLSLPD+R Sbjct: 380 VMCPNVEDYAPFVQAVFSRSFAELSEAVPPLPCSIADRNLKDADPTVAAFLELLSLPDTR 439 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT-GQHT 523 F +++ L +P +A +F+++ + L+ + +W+ + I WG+D + + T Sbjct: 440 FEVSRLISWLRIPAIADKFNLSADDLQRITRWLERANIHWGLDGQHKAQWTGQECTDHFT 499 Query: 524 WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 W+ GL R+LLG+A L + G A ++G L S++ QL R L + R Sbjct: 500 WKQGLDRLLLGFAYGDHDAFVHDELLLHDVEGADALILGRLTSIIEQLQNIRSDLTRART 559 Query: 584 LEEWLPVCRDMLN-AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA-VPLSLLRDEL 641 W D L A + E + I + A +PLS++R L Sbjct: 560 PSAWQSYLIDQLQIAMLSTQSAYERSNQSILKAINDFTEFANKANLEQTDLPLSVVRYVL 619 Query: 642 AQRLDQ-ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 E+ +F+ G + +C+++PMRSIPF+VV +LG+NDG +PR PLGFDLM+Q+ Sbjct: 620 ENAFASPEQTGSQFMTGQITVCSMVPMRSIPFRVVAILGLNDGDFPRNRPPLGFDLMAQQ 679 Query: 701 -PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 P+ GDRSRR DDRYLFLEAL+SA+ LY+SY G I+ N R PS++++EL Y+ + + Sbjct: 680 PPRLGDRSRRGDDRYLFLEALLSARDHLYLSYQGFDIRKNEARPPSLVLEELFSYLERGY 739 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSE 819 +A PF P+NYQ GE S+ +W+ + Sbjct: 740 GFE--------------RARHIRQLPLQPFSPKNYQ-GEYPSFNDQWIHLQRPEPEQELL 784 Query: 820 FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE-IPDTEPFILEGLSRY 878 + P P + +F++HP RAF + RL + +E + D+EPF L L RY Sbjct: 785 NLLPATDLSPSE-SIHDWVKFFSHPARAFCEQRLGLYLNNTTTENLEDSEPFTLNHLDRY 843 Query: 879 QINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG 938 Q+ + ++AL+ Q+ + L ++ +AA P ET Q+ D V A Sbjct: 844 QLQTETVSALLNQESPDVLIQQAKAASAFPLSDLALTTAETWQQQAASFTDLVRAEGADR 903 Query: 939 -QSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR 997 + + L ++G LP + LL WR + +QLWL HL+ + Sbjct: 904 IEYRPVTLQTADWSLSGVLPIIDNQQLLSWRLANAKGRDILQLWLMHLLANSQKPTHSRG 963 Query: 998 LFLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 L+ +D + F E A L+ L +++G+ P ++ WL Sbjct: 964 LYRGRDEKVEQFDLAPIEDATSLLNDLYRQWQQGLQEPSVLH----SDWL---------P 1010 Query: 1057 MLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRF 1112 + D T +K KF Q ++ N RG D + ++Q+ P+ + + +R+ Sbjct: 1011 LYLSDPTNEK---KFWQIWDDNFNHRGLRYDPYIDFCFQQM-PDPQTTMDDMDRRY 1062 >UniRef50_Q480N8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480N8_COLP3 Length = 1198 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 334/1201 (27%), Positives = 564/1201 (46%), Gaps = 150/1201 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M+ +Y +N+++ L L+ I + L F E+I+VQ+ GM WL + ++Q+ GI+ N+ Sbjct: 1 MIHLYPANKMENLLLLLNKISQLSPL-GVFNQEVIVVQNAGMQHWLNLAIAQERGISMNM 59 Query: 61 DFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLL--PQLLEREDFTLLRHYLT 116 + LPA F+W + + + +P++S ++++ + W++ LL ++E +DF+ HY Sbjct: 60 RYALPAQFLWKLIRSLASDEKVPEQSPYSREVLCWRIHALLALDSVVEDDDFSQATHYWR 119 Query: 117 DDSD---------------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-LVEGLGE 160 ++ + K +QL+++ ADL++QYL++RP WL W+ G+ ++GL + Sbjct: 120 GENTTDEEDNNTVNDSKHAQLKRYQLATQLADLYEQYLIFRPQWLDNWQQGNFELDGLEK 179 Query: 161 ----AQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGI 216 WQ LW+ L+ ++ L I ++ +P R+ G+ Sbjct: 180 ISASEHKWQGKLWRLLIAQL------PYNPVELMHDAIANIQDKKEL---IPPRISFFGL 230 Query: 217 SALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL 276 + + P++L + AL +H+E+H NPC YWGD+ Y + + D LP Sbjct: 231 NTMAPMWLNFINALSEHVEVHFFHLNPCFSYWGDVVTEKYAL-----NKLSQWSDGVLPE 285 Query: 277 FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPD---- 332 D + VGNPLLA+ G+ GR++I +L D S+ +++ F Sbjct: 286 ELDVHSY-----------VGNPLLANLGQQGREFISMLQDY-STIDVELFEQAKSAQAIS 333 Query: 333 ------NLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREV 386 ++LH +Q+DILEL + + D SI CHS REV Sbjct: 334 NNNDVTSVLHQLQNDILELSDARSPDDEAITPKAVQH-------DDSIVITSCHSALREV 386 Query: 387 EVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD-----RYLPYAISD 441 + LHD LL +D +LTP+DI+VM I+ Y+P++ AVF D LP +I+D Sbjct: 387 QALHDYLLHQFNQDKSLTPKDILVMCPQIEQYAPYVNAVFTRGWQDIAGEVPPLPCSIAD 446 Query: 442 RRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESG 501 R A+ S P++ AF LL+LPDSRF +L+ L +P +A F I E L + W+ ++ Sbjct: 447 RSAKDSDPLVAAFTELLTLPDSRFGVSQLLSFLRLPAMANNFSINGEDLAKISAWLEQAT 506 Query: 502 IRWGIDDDNVREL-ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL 560 + WG+D + + L A TW+ GL+R+L G+A ++ +Q L G + L Sbjct: 507 VHWGLDLTHKQSLLGQQANASFTWQQGLSRLLRGFAYADSEQIYQQQLLLSNVEGSDSIL 566 Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF----LPDAETEAAMTLIEQQW 616 +G L + QL+ + L + R +W + L+ F + E ++ +IEQ Sbjct: 567 LGQLMLFIEQLHYFSENLQRSRTAIQWQTFLLEQLSHLFSRVDADNVSNENSLMVIEQAI 626 Query: 617 QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVC 676 ++ A + D + L ++ D L+Q Q S++F+ G V C+++PMRSIPFKV+ Sbjct: 627 AGLVEHCHHAHFEDDISLLIVVDYLSQHFSQGDASKQFMVGQVTFCSMLPMRSIPFKVIA 686 Query: 677 LLGMNDGVYPRQLAPLGFDLMSQ-KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 +LG+NDG +PRQ LGFDLMS K K GDRSRR DDRYLFLEA+IS++ LY+SY GR+ Sbjct: 687 VLGLNDGEFPRQRQALGFDLMSLSKAKLGDRSRRGDDRYLFLEAIISSRNSLYLSYQGRN 746 Query: 736 IQDNSERFPSVLVQELIDYIGQSHYLPGDEAL-----NCDESEARVKAHLTCLHTRMPFD 790 I++N+E+ PS++V+EL++Y+ Q + E N D++ A F Sbjct: 747 IKNNNEKQPSLVVKELMEYLAQGYGWQFSEEQLTSDNNNDDTNAESNQSGIYQLAMQAFS 806 Query: 791 PQNYQPGERQSYAREWLPAASQA--------GKAHSEFVQPLPFTLPETVPLE----TLQ 838 P NY+ G S+ WL + G+ + ++ L T +TV + L Sbjct: 807 PNNYR-GTWPSFDANWLALGQSSNSDNDESMGEGSTLAIESLAVTPEQTVEVSLSCQQLI 865 Query: 839 RFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ------- 891 RF+ HP + F Q +L + F D + D EPF + L Y + Q LL+A + Sbjct: 866 RFYQHPAKMFAQQQLNLYFENHDVLLEDVEPFSVNHLQSYLLRQDLLSAALTGTIESPSN 925 Query: 892 -DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSM---EIDLAC 947 D +E++ R +G P ++ ++QQ ++ + + + L Sbjct: 926 KDGSEQVITRAHLSGKFPDLPTTTNLFKDYQLDVQQFSEEISKVNCENPELIDCNLVLDI 985 Query: 948 NGVQITGWLPQ-----------VQPDGLLRWRPSLLSVAQGMQLWLEHLV---YCASGGN 993 +G ++ G Q V+ + L+ +R S ++ + LV + Sbjct: 986 DGTEVDGPSAQKIRVSLNTKLAVKNNLLVHYRSSSAKAKDKFVMYFQQLVVQVWQDQAIA 1045 Query: 994 GESRL-----------------FLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPL 1035 E+ + F K + F A L L++ + +G L Sbjct: 1046 NETNITDDNQRLQQVTETIGLYFNTKAQKVEQFNVANIADAKSKLINLVKMFFKGQQQVL 1105 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR 1095 L+ G + + +++ +F + G+M RG DD + W Sbjct: 1106 LL----NGELADQVFTKKRGQLVEMTQA------RFEGLWIGDMSTRGLSDDDYLSYFWP 1155 Query: 1096 Q 1096 + Sbjct: 1156 E 1156 >UniRef50_D0IXL5 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Comamonadaceae RepID=D0IXL5_COMTE Length = 1195 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 354/1192 (29%), Positives = 541/1192 (45%), Gaps = 120/1192 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L H N+ + L + + L EPE++LVQS GMA+W +M ++++ G+ A Sbjct: 20 LIAIHGNQTEALADTVLAWLAAHPLQA-LEPEIVLVQSNGMAEWFKMRMAEQQGVCAAAQ 78 Query: 62 FPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 LPA F+W + ++L E+P+ES +K M W+LM LLPQ L F + ++L Sbjct: 79 VELPARFVWRSYRQILGRHEVPRESPLDKTPMIWRLMRLLPQCLGEPAFAPIANFLRP-G 137 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQAWQAPLWKA 171 + ++L QL+ K ADLFDQY +YR DWLA WE G V + E Q WQ LW+ Sbjct: 138 EPQRLLQLAEKLADLFDQYQIYRADWLAAWEKGEDVLRTAGRPDAPVPEGQLWQPQLWRK 197 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 ++ + + R L R ++ L+S L RV + G+S +P +Q L + Sbjct: 198 VLAELDEQ-ERAATRPALLARILDALQSGQPPVTPLARRVVVFGMSQMPLSLMQFLSGIA 256 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 +H ++ + NPCR++W D D L + R+ + + +A Sbjct: 257 QHSQVLIAVPNPCRFHWADAIDGRELLRQQRRRHADKGGKDLAQIPLAAMHA-------- 308 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQEL---------DAFVDVT-----PDNLLHN 337 +PLLA+WG+ RDY+ L +++ ++ D + + LL Sbjct: 309 ---HAHPLLAAWGRQSRDYVRQLDAFDTTGDIAVQWGWPRVDVYDEADASELIDAPLLVQ 365 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 +Q I +L + + D SI FH H RE+EVLHD+LL L Sbjct: 366 VQQRIRDLVPMS-----------EHPAVEIAAADQSIVFHKAHGLVRELEVLHDQLLQWL 414 Query: 398 EEDPT-----LTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPV 450 E L PR+++VM+ I+ +P I+AVFG R++P+ I+D AR S P+ Sbjct: 415 AEPAAAGRAVLAPREVVVMLPSIEEAAPAIRAVFGQYGRHDARHIPFDIADVGARASSPL 474 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 + A LL LP R ++ LLDVP +AAR + + L L W+ +GIRWG++ Sbjct: 475 VTALQWLLKLPQQRCRLSELCDLLDVPAVAARVGLAADDLPQLTHWMAGAGIRWGLNHAQ 534 Query: 511 VRELELPATGQ-HTWRFGLTRMLLGYAME-------SAQGEWQSVLPYDESSGLIAELVG 562 +L L A G ++ FGL RMLLGYA + + PYDE GL AEL G Sbjct: 535 RAQLGLAACGDPNSAWFGLRRMLLGYASGPALEAAFDEAQVFAGMEPYDEVGGLTAELAG 594 Query: 563 HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAM-TLIEQQWQAIIA 621 LASLL ++ W + A E W R +++ FF+ + + A+ ++ A Sbjct: 595 SLASLLGRMLQWWQTAATAAAPEVWAQRFRSLMDDFFVAQGDEDQALCAALDTALVGWQA 654 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMN 681 A + +PL + ++ Q L + ++QRF AG V CTLMPMR+IPF+VVCLLGMN Sbjct: 655 ACEQAGFEALIPLEVAQEAWLQALSEPALNQRFRAGGVTFCTLMPMRAIPFEVVCLLGMN 714 Query: 682 DGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDN 739 DG YPR+ + FDLM+ + + GDR+RRDDDR L L+AL+SA+ KLYIS+ GR ++DN Sbjct: 715 DGDYPRRATRVDFDLMALPGQQRPGDRARRDDDRQLMLDALLSARSKLYISWAGRHVRDN 774 Query: 740 SERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY-QPGE 798 SE+ PSVLV +L DY+ Q L+ E + A T H PF + Q Sbjct: 775 SEQPPSVLVSQLRDYLRQGWQGEDSAGLSASERGELLLAQRTRQHPLQPFSRSYFEQASG 834 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFR 858 ++AREW A + V + L L F HP R+F + RLQV F Sbjct: 835 LSTFAREWYGAHEERAAQVLPVVAAFEPDPEVPLTLARLTEFLRHPARSFLRNRLQVRFE 894 Query: 859 TEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD----------AERLFRRFRAAGDLP 908 ++ + D E F ++GL+ Y + QQL + Q +R + AG LP Sbjct: 895 QDEELLEDDELFSVDGLTAYGLIQQLQQGVRTQLAHDAELDVGLQVQRQVQCLGRAGVLP 954 Query: 909 YGAFGEIFWETQCQEMQQLA----DRVIACRQPGQSMEIDLACNGVQITGWLPQVQPD-- 962 G E + ++ + L V + W+ +Q Sbjct: 955 LAGLGRREAEVLQAQATPSLLAWQQQMRLWPHAAPRERLLLHSGAVTLDDWMDGLQEREE 1014 Query: 963 ----------------GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEW 1006 L + L + + +++ L ++G + + R W Sbjct: 1015 PSSDAGHSRCWFALEPRTLLNKKGELQAHKLLPIYVRSLALSSTGSDTLMGVIARDTLVW 1074 Query: 1007 RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQK 1066 PL E A L L++ + G + PL + ++ A + Sbjct: 1075 -VQPLEPEAATQRLQALMQLWLTGQNEPLPLPLKAAIA------------------AGRD 1115 Query: 1067 ARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLF 1117 QAYEG M+ GE +D + R + T + +++ PL Sbjct: 1116 ELNAAAQAYEGGYMLGGECEDPSWARCYPDWEALTADLRFHVLAKQVYGPLH 1167 >UniRef50_Q60AZ6 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Methylococcus capsulatus RepID=Q60AZ6_METCA Length = 1138 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 325/1189 (27%), Positives = 520/1189 (43%), Gaps = 133/1189 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L ++ SNR ++L + + + DPF E ++V S + + L++ + +FG+ AN++ Sbjct: 5 LNIFFSNRFEILTQRLFDDLAQGP-ADPFVAEQVIVPSLAVRRRLELDHADRFGVCANVE 63 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 F A ++W +V+ E+ S F +++W++ +L + L+ YL +D Sbjct: 64 FSYLAHWLWVQIGQVI-EVGASSPFAPATLTWRVFRMLGEEALVSAHPRLKSYLA-RADG 121 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE----AQAWQAPLWKALVEYTH 177 F L+ + A L +QYL YRPDWLA W G GL E +AWQA W+ LV+ Sbjct: 122 AMRFDLAQRVAHLLEQYLTYRPDWLAAWLEGRPASGLPEASREDEAWQAAFWRTLVD--- 178 Query: 178 QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 +L R H + + R +E + T GLP+R + + +PP+YL L L + E+H Sbjct: 179 ELEVRREHPSAAFFRAVEAMGPEATRRAGLPARAHLFCLPTIPPLYLDILGKLARWTELH 238 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 L NPCR YW DI DP L L R ++ GN Sbjct: 239 LYVLNPCREYWFDIVDPRRLNYLEVR------------------------GDALYRETGN 274 Query: 298 PLLASWGKLGRDYIYLLSDLESSQELD--AFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 LLA+WG+ + +I LL D +D F +LL +Q IL+L + Sbjct: 275 RLLANWGQQTQAHIDLLFDKAEGAVIDDAQFEPPARISLLAAVQEAILDLRDPEPGCCAS 334 Query: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 D SI HVCHS RE+EVLHD+LLA+L DI+V++ + Sbjct: 335 V------------AGDRSIEVHVCHSLVRELEVLHDQLLALLARPDAPKVSDILVVMPRL 382 Query: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 + +P I AVFG+APA R +PYAI+ R ++P A ++LL L SR + V L Sbjct: 383 EEAAPLIDAVFGTAPAARRIPYAITGLRRTVANPAAAALLTLLGLFASRCKASAVYEFLQ 442 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 P++ ARF + + L + W +GIRWG++ + + + LP +H++ GL R+ LGY Sbjct: 443 RPLVHARFGLGLDDLECIHDWFQAAGIRWGLNGAHRKAVGLPEVERHSFCDGLDRLFLGY 502 Query: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 A+ ++ LP G A +G A + L W R + + W ++ Sbjct: 503 ALGDVPVQFDGRLPAGSPEGSEALALGGFAHFVDLLTHWHRVWSTPATAQTWGERLNAVV 562 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 AF + ET + + + A+ A + ++R L LD Sbjct: 563 GAFLMETPETVPDLQEVREAIAALSRHWGEAAVTGTIEPEVVRVALESLLDD-PARGGTP 621 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL 715 +G + + +RS+P++VVC++G+NDG +P P FDL++Q P+RGDR RR D+R L Sbjct: 622 SGRLTFTAMASLRSLPYRVVCVIGLNDGEFPHPDRPAEFDLIAQAPRRGDRQRRYDERNL 681 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 FL+ L++A+++LY+SY GRS++DN+ PS L + + ES Sbjct: 682 FLDLLLAARERLYLSYTGRSVRDNAPLPPSTL-------LSELLDYLLPLVAAAGESPEE 734 Query: 776 VKAHLTCLHTRMPFDPQNYQPG-----ERQSYAREWLPAASQAGKA-------------- 816 + L H F P + S+ E+ A A Sbjct: 735 ARRRLVVEHPLQAFSPVYFDAAVAKDPRLVSFNSEYCEALRAARSPRPSGEGVRACESHS 794 Query: 817 ------------------------------------HSEFVQPLPFTLPE--TVPLETLQ 838 F P+ PE L+ L+ Sbjct: 795 QEPEECSAILAERERADHGPAGPIAGEEQNDPDFEHAPFFPAPMAAPEPEWREPNLDVLK 854 Query: 839 RFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF 898 RF+ +P R + RL + ++E+ D EPF+ +R ++ ++LL ++ E + Sbjct: 855 RFFRNPCRYLLEQRLGLTLAEGEAELADDEPFLPAYFARGEVAERLLPLMLSAATEEAVE 914 Query: 899 RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ------SMEIDLACNGVQI 952 RA + P G GE+ + + +++ A+R+ Q + + + Sbjct: 915 VVARAGIEFPQGQLGELLLKGELTRIREYAERIAGQTQEEPLQPLPGRLAFQIEGETWTL 974 Query: 953 TGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASG--GNGESRLFLRKDGEWRFPP 1010 +G L QV GL+RWR + WL+HL A G + ++ +DGE+R P Sbjct: 975 SGALGQVWRRGLVRWRYDDTRPVDYLSGWLDHLFLNALAVRGVEPTTTWISRDGEYRLRP 1034 Query: 1011 LAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTK 1070 +AA A L +L+ YREG+ PL P S AW Q + Q A + Sbjct: 1035 VAA--AQERLRELVALYREGLRLPLHFFPRS--AWACALGLKQGGS--------QAAERQ 1082 Query: 1071 FLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 + +EG+ RGE +D+ Y++ R A + PL Sbjct: 1083 ARKRWEGSGDRRGESEDLAYRQALRGQADPLDGAFFRTVRTVFGPLLDH 1131 >UniRef50_C4ZM87 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Thauera sp. MZ1T RepID=C4ZM87_THASP Length = 1218 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 374/1239 (30%), Positives = 555/1239 (44%), Gaps = 181/1239 (14%) Query: 6 HSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLP 65 H NR++ L + + + L P E E+ILVQS GMA+W++M ++++ G+ A LP Sbjct: 22 HGNRIETLLDTVAGWLAQHPLA-PLESEVILVQSNGMAEWVKMAIARRAGVCAAAAVQLP 80 Query: 66 ASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRK 123 A F W + +VL +P S +K +++W+LM LLP++L F + YL D+ D + Sbjct: 81 ARFQWQTYRQVLGRAQVPARSPLDKTALAWRLMRLLPEVLAEPGFAPVAGYLADN-DPGR 139 Query: 124 LFQLSSKAADLFDQYLVYRPDWLAQWETGHL------------------------VEGLG 159 FQL+ + ADL+DQY V+RPDWL W G L Sbjct: 140 RFQLALRIADLYDQYQVHRPDWLDAWGEGREALPDAGRGETPLTGRGETPLAGRGETPLP 199 Query: 160 EAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLES-----ATTCPPGLPSRVFIC 214 E Q WQA LW+ +V+ Q R L+ R + L++ A LP RV + Sbjct: 200 EDQRWQARLWQRVVDEL-DPQQRALTRPQLHDRVLAALDAIAEDAALHPAAALPRRVVLF 258 Query: 215 GISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDREL 274 G++ +P LQ L AL +H ++ L NPCR++W DI D ++ R+R+ + REL Sbjct: 259 GMTHVPLPTLQLLAALSRHAQVLLAIPNPCRFHWADILDGREWLRIA-RRRQPLRDGREL 317 Query: 275 PLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---------LDA 325 Q D +PLLA+WG+ RD++ L + +++ +D Sbjct: 318 ----------QDVGLDAMHLHAHPLLAAWGRQARDFVRQLDAFDDAEQTRARFPLARIDL 367 Query: 326 FVD------VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVC 379 F D V LL +Q I +L A P+ D SI FH+ Sbjct: 368 FDDDQDTHDVAQPTLLVQVQRHIRDLTPLAEHPHP-----------PVPAEDRSIVFHLA 416 Query: 380 HSPQREVEVLHDRLLAMLEE---DPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRY 434 HSP RE+E+LHD+LLA+L D L PRDI+VMV ID ++P I+AVFG R+ Sbjct: 417 HSPVRELEILHDQLLALLARPPGDKPLRPRDIVVMVPSIDDFAPAIRAVFGQYGRHDPRH 476 Query: 435 LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLR 494 +P+ I+D AR S P++ A LL + R D+ ALLDVP +AARF + EEGL L Sbjct: 477 IPFDIADLSARASSPLMGAVEWLLRIRHDRCRLSDLGALLDVPAIAARFGLAEEGLPRLT 536 Query: 495 QWVNESGIRWGIDDDNVRELELPAT-GQHTWRFGLTRMLLGYAME----SAQGEWQSVLP 549 W+ +GIRWG+D + L L A Q++ FGL RML+GYA + + + P Sbjct: 537 GWMRGAGIRWGLDARHRAGLGLQACGEQNSALFGLRRMLMGYAAGRSEVTTDAPFAGIEP 596 Query: 550 YDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF-LPDAETEAA 608 YDE GL AEL G LA L+ +L W+ + W R +L D Sbjct: 597 YDEVGGLDAELAGALAHLVERLIRWQADSRRPATPAAWTQRLRALLADLVRAVDDTDRQT 656 Query: 609 MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMR 668 + ++ + + A + +PL++ + L+ + +RF AG V CTLMPMR Sbjct: 657 LAALDDALERWLEACDEAAFEAELPLAVAAEAWLAALESPALDKRFRAGGVTFCTLMPMR 716 Query: 669 SIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQK 726 +IPF+VVCLLGMNDG YPR+ FDLM+ + + GDR+RRDDDR L LEAL+SA++ Sbjct: 717 AIPFEVVCLLGMNDGDYPRRSPRSDFDLMALPGQQRPGDRARRDDDRQLMLEALLSARRV 776 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTR 786 LY+S+ GR+++DNS + PSVLV +L DY+ V A T H Sbjct: 777 LYLSWCGRNVRDNSVQPPSVLVAQLRDYLAAGW-------------SPAVVAERTVEHPL 823 Query: 787 MPFDPQNYQPGE-RQSYAREWLPAASQA---------------------------GKAHS 818 PF + ++PG +YAREW A +A G+A S Sbjct: 824 QPFSRRYFEPGTPLLTYAREWRAAHVEAAAQDDAVPSHDGQANREATGRATRPTRGEAAS 883 Query: 819 EFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRY 878 + P + + L F +PV+ FF+ RL V + D +PD E F +GL + Sbjct: 884 PPLPPFVPDPAVPLTIAALAAFLRNPVKVFFRERLGVVYEDVDEALPDDEAFGFDGLEEH 943 Query: 879 QINQQL---------------LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQE 923 + ++L L+A + E R AG LP G G + Sbjct: 944 GLVEELAAAVLADLALLPPPELHAFALEAAVEAQLGRIERAGRLPIGGLGLRARAALGEA 1003 Query: 924 MQQLAD--RVIACRQPGQSMEIDLAC-----------------NGVQITGWLPQVQPDGL 964 + L R++ P + +L + + WL L Sbjct: 1004 VLPLLRAWRLVRASHPLDAERGNLRFAHAGALMEDWLDHRVRADEHALPSWLAHDPGRLL 1063 Query: 965 LRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLI 1024 L + + W+ L A+ + L + +D P A L++LI Sbjct: 1064 EDADKGTLRPWRLLLPWVRSL-LAAAADSPSGGLLVGRDATVHIVPTDPAVARALLARLI 1122 Query: 1025 EGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGE 1084 E + G+ PL V + A + K +AYEG+ RGE Sbjct: 1123 EAWIAGLGEPLPVAARTALALV--------------------GEGKPAEAYEGSEHRRGE 1162 Query: 1085 GDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLFRFNQS 1122 ++ R + + ++ PL + S Sbjct: 1163 VEEASLARCYPDYAALIEDGRFEHLARALYGPLLEWMDS 1201 >UniRef50_A1SDB1 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Actinomycetales RepID=A1SDB1_NOCSJ Length = 1113 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 306/1166 (26%), Positives = 509/1166 (43%), Gaps = 114/1166 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG------ 55 L+++ ++R DVL + ++ R L DPF E+++V + G+ +WL LS + G Sbjct: 3 LQIHRASRTDVLADALGDLL-RTPLADPFAEEVVVVPAKGVERWLTQRLSHRLGAGPRGD 61 Query: 56 --IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 + A + F P S + + R ++ ++ + + W L+ + + L +F L Sbjct: 62 DGVCAGVRFLNPRSLVSLLLGR-----ERDDPWDPERLVWPLLATIDESLGEREFATLGR 116 Query: 114 YLTDDSD-------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-----VEGLGEA 161 +L D + + + ++ + A LF Y + RP + W G +GL Sbjct: 117 HLGHGVDGADGELRRNRRYSVALRLAHLFASYALQRPSLVTAWREGRDGEHGGEQGLPPD 176 Query: 162 QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPP 221 AWQ LW+ L+ H + L++ P LP R+ + G + +P Sbjct: 177 LAWQPELWRRLIAQVDAPPPDVRH-----AQTCAALQAGGDGLP-LPDRLSLFGHTRIPV 230 Query: 222 VYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSE 281 + L+ALG+H ++HL P W D+ D ++ R Sbjct: 231 TEVALLKALGEHRDVHLFLPQPSPVLWDDLADLGGPGGVVPRA----------------- 273 Query: 282 NAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVT-----PDNLLH 336 D + VG+PLLAS G+ R+ LL + S + T P LL Sbjct: 274 ------ADDSVERVGHPLLASLGRDARELRRLLDGVSSEEVRPPAGTPTGSTTDPVTLLG 327 Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 +Q D+ + + R LDP D S+ H CH P R+V+VL + L+ + Sbjct: 328 WLQHDLRANHAPS---------YDERSTRELDPDDHSLQVHACHGPARQVDVLREVLVGL 378 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD----RYLPYAISDRRARQSHPVLE 452 LE+DPTL PRD++VM DI++Y+P I A FG A D L ++DR ++P+L Sbjct: 379 LEDDPTLEPRDVLVMCPDIETYAPLISAGFGLATTDGHPAHRLRVKLADRALTSTNPLLA 438 Query: 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVR 512 LL L R + DVL L + RF T++ L + +WV +G+RWG+D+++ Sbjct: 439 VAGDLLDLAGGRVTASDVLDLAGTDPVRRRFGFTDDELDRVSRWVARAGVRWGLDEESRA 498 Query: 513 ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSV-LPYDESSGLIAELVGHLASLLMQL 571 + +TWR GL R+LLG AM LP D+ + +L G LA L+ ++ Sbjct: 499 AFRMERFPHNTWRTGLDRILLGVAMSGDDHHHLGRGLPLDDVASSEIDLAGRLAELVARV 558 Query: 572 NIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 + LA R + +W RD + + A+ + E++ A Sbjct: 559 DRTLTVLAGARTVADWATGLRDGVRSLVDVAADDAWQVPQFERELGRAAASSHEGGL--E 616 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + L+ +R L RL F G + + T++PMRS+P +VVCL+G++DGV+PR A Sbjct: 617 LRLADVRAMLESRLAGRPTRANFRTGSLTVATMVPMRSVPHRVVCLVGLDDGVFPRAGAV 676 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 G D++ + P G+R R +DR L L+A+++A + L I+Y G Q + P+V + E+ Sbjct: 677 DGDDVLGRHPLTGERDVRSEDRQLLLDAVLAATEHLVITYSGADEQSGASLPPAVPLGEI 736 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAAS 811 +D ++ P V+ + H P+D +N+ S+ L A Sbjct: 737 LDAADRTTNAP-------------VRDRVLTRHPLQPYDARNFTRERPFSFDTAALAGAR 783 Query: 812 QAGKAHSEFVQPLPFTL---------PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 A E L L V L+ L+ F HPVRAF + RL V E Sbjct: 784 SARGVRREPPPLLDGPLPPRLALDGRAADVSLQDLRDFLGHPVRAFLRGRLDVATPFEPD 843 Query: 863 EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQ 922 ++ D P L+ L ++QI +LL L+ D + + AG LP G + + Sbjct: 844 DLADAIPVSLDSLEKWQIGDRLLRQLLAGQDPVAVLTAEQLAGTLPPRGLGTLALHEVAE 903 Query: 923 EMQQLADRVIACR-QPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQL 980 E Q+L R R +S+++D+ +G ++TG +P V ++ S L+ Q + Sbjct: 904 ECQRLWSRTADLRDGERRSVDVDVDLRDGRRLTGTVPGVYGSRVVSLGYSRLNARQRLHA 963 Query: 981 WLEHLVYCASGGNGESRLFLRKDGEWRFPPLAA------EQALHYLSQLIEGYREGMSAP 1034 W++ L A+ + G+ R P A +A+ +L L++ G+ AP Sbjct: 964 WVDLLALSAT--YPDQHWTAHAVGKDRAGPKRALCGPLDHRAVGWLRDLVDLRDRGLCAP 1021 Query: 1035 LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 L V ++G AW + M D ++ AR ++ + GE D ++QR++ Sbjct: 1022 LPVPVKTGAAWADAHA---RELMGQDHPPVEAARREWETDPHNQFGITGEDADPYHQRVY 1078 Query: 1095 RQLTP---ETMEAIVEQSQRFLLPLF 1117 P + E + PL Sbjct: 1079 GPAAPVEALLDAGLGEHAWAIWEPLL 1104 >UniRef50_C1SHH5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH5_9BACT Length = 1038 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 262/1046 (25%), Positives = 470/1046 (44%), Gaps = 77/1046 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y NRL+ L M+ + P I +Q+ GM +W+ + L++ GI+AN+ Sbjct: 1 MLKIYTGNRLERLLEKMDMNICSAG-SGPLTKVPICIQTPGMQRWIGIKLAELTGISANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAF-NKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 DF P + + + E ++ + K + WK+ + L L + + +R+YL D Sbjct: 60 DFIFPGALMKRLAGVGAGE---KAPWPEKNELVWKVYSKLNSLPSEQFYEHIRNYLEGDI 116 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL-GEAQAWQAPLWKALVEYTHQ 178 + + ++L+ + AD+FDQY VYRP + W + + WQ L++++ Sbjct: 117 NGIRAYRLAGRIADVFDQYQVYRPQMVLDWLSVKPKNPPVEDNDIWQMELFRSIF----- 171 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 + ++ +FI+ P L + + I GIS LP +++ L+A ++ +I+ Sbjct: 172 -PHGSGCKTTIFDKFIKNCTKGANNCPALKTPIHIFGISVLPAFFIEMLKAASQYTDIYF 230 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 +P R YWGD K +L ++ + + + + Sbjct: 231 YLLSPTRQYWGDSKTIREKRRLEKITQKSA--------------------EELYIEEKHE 270 Query: 299 LLASWGKLGRDYI-YLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LL + G +GRD+ YL +S + + D+ +++L +Q++IL+LE Sbjct: 271 LLDNLGVIGRDFFDYLFGSDDSFLTEEEYFDIAKNSVLQTVQAEILDLEYGNEKP----- 325 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 D+SI + CH+P RE+E L+D+LL + D TL P DI+VM DI+ Sbjct: 326 -----------SHDNSIIINNCHNPLREMETLYDQLLELFNNDQTLRPSDILVMTTDIEK 374 Query: 418 YSPFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y+P+I+AVF + ++R +PY+I+D +Q++ F+ LLS F DV+ +L Sbjct: 375 YAPYIKAVFDNPYSERERIPYSIADVSEKQTNRPAGIFLELLSTLRGDFSLADVMRILSY 434 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 ++A +F I L L + +G W +++R+ L TW L R+ LG A Sbjct: 435 DLIADKFSIKRSDLSTLSTMLQNAGAMWSYGREHLRKEGLTIDDTFTWERALRRVALGLA 494 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 E + G S ++ +G L + + + E+ + EW + + + + Sbjct: 495 -EGSSGSIYSEAAVKNVPFSLSVQIGGLMRFADLSSKYAEQMDSEKTIPEWCALMQALAD 553 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 + + + + + I E + +AVP + + + L + L + R ++ F++ Sbjct: 554 DYIKETFDNADDILHLSKCIADINTEAENGDFTEAVPAAPVLERLTESLSETRGAKGFIS 613 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLF 716 G V C ++PMRSIPF+V+C+ G+++ +PRQ L FDLM++ PK GDR+ RD DRYLF Sbjct: 614 GRVTFCAMLPMRSIPFRVICVAGLDENTFPRQKVSLEFDLMAKSPKPGDRNNRDSDRYLF 673 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 LE LISAQ L +SY G+S +DN+E PS L+ EL ++ + Sbjct: 674 LETLISAQDTLILSYTGQSERDNAELLPSTLITELNTHLKGRFGIED------------- 720 Query: 777 KAHLTCLHTRMPFDPQNYQPGERQSYAREWL---PAASQAGKAHSEFVQPLPFTLPETVP 833 +T F + + +Y+ + A S H P+ +P+ V Sbjct: 721 ---ITLKQKLHSFSRDYFSNEKLFTYSSDKYNTSRAFSSEKTGHRFSTLPIEVQMPDEVS 777 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 L + F+ P F + L++ + D +P+ E + L +Y+I L +E D Sbjct: 778 LADFENFFISPPDYFLRKVLEIRPKLRDESLPENEIMCPDPLLQYKIIDNALRERLEGKD 837 Query: 894 AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-GQSMEIDLACNGVQI 952 + LP G + +L V + +ID A +G+ I Sbjct: 838 PDNALEYLYKTAQLPPENLGRLSITETLNTSMELNRTVTETLGGTPEEQKIDSAIDGLHI 897 Query: 953 TGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLA 1012 +G + V + + +P+ + ++ W+ HL+ C + PP Sbjct: 898 SGTIFGVSGNRYVYAKPASIKPKDIIRGWIRHLLLC--QKASITTTLCGGGNTVEIPPAD 955 Query: 1013 AEQALHYLSQLIEGYREGMSAPLLVL 1038 + +L+ L+E ++EG +PL Sbjct: 956 S----GHLNNLVEIFKEGHKSPLRFH 977 >UniRef50_Q1NSB7 Exodeoxyribonuclease V, RecC subunit n=3 Tax=Proteobacteria RepID=Q1NSB7_9DELT Length = 1155 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 350/1183 (29%), Positives = 542/1183 (45%), Gaps = 104/1183 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVE-----------RERLDDPFEPEMILVQSTGMAQWLQMTL 50 L +Y SNR++ L A +E + P E I+VQS GMA WL+ L Sbjct: 6 LLLYRSNRIEELLACLEAELAVASSAGSSAGSSAGSSAPLTAECIVVQSQGMAVWLEQRL 65 Query: 51 SQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL 110 +++FGI AN DFP P F + VL +++S + L+ LLP+L +R +F Sbjct: 66 AERFGIWANPDFPHPRRFHQRLLQAVLGRQAVADFSHRESFTLALLALLPKLPQRPEFAP 125 Query: 111 LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQ----AWQA 166 L YL D +D K QL+ K A LFDQY VYRP+ + WE G G A+ WQ Sbjct: 126 LARYL-DGADDWKCLQLAEKIAYLFDQYAVYRPEMVLAWERGEEQAGTAGAELADNRWQP 184 Query: 167 PLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQA 226 LW+ L P L + F + P LP R F+ I+ LPP+YL Sbjct: 185 LLWRRLSRQLGSPVAP------LTEAFASLRQGRLAAPELLPPRAFLFAITTLPPLYLNL 238 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L + I IHLL +P R YW DI PA L ++ R + + P Sbjct: 239 LDQAARIIPIHLLLFSPAREYWADIFTPAALREMELRHSDAALLEEGEPAALHLSG---- 294 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSD---LESSQELDAFVDVTPD-NLLHNIQSDI 342 G+PLLAS G + R++ +L + + + + + F + + LL +Q DI Sbjct: 295 ---------GHPLLASLGTVAREFQDILEEQSDYQPATDGERFPENQENPGLLARLQQDI 345 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 +L+ A + D S+ H+CHSP REVEVL D+ L L + Sbjct: 346 AQLKEPAAGEGEESQPP---------TADDSLAIHICHSPLREVEVLQDQ-LLQLLDGEE 395 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLP 461 +P DI+VMV DI++Y+P I+AVF P DR +PY I+DRR + +L+ + + Sbjct: 396 FSPHDIVVMVPDIETYAPLIEAVFNRPPGDRRRIPYRIADRRLSREGELLDTLLRFFEVA 455 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 R VL LL + + L+ + QW+ +S + WG+D+++ + PA Sbjct: 456 RGRLEVSAVLDLLAAEPVRRGLGLDGGQLQRIEQWLRQSRVCWGMDEEHRQHHGQPAQRL 515 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 +TWRFGL R+LLGYAM +A + +LP+ + G + G L +L + + Sbjct: 516 NTWRFGLDRLLLGYAMPAASDVFADILPHADIEGQESVTAGILLRFCEELFALVKLVQTP 575 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 + + +W + + +L + DA ++ + +++E A + L L Sbjct: 576 QTIADWATISQRVLISLGGDDAASDWQELCLRDTLAQLLSEADQAALTRPLELPAFLRLL 635 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 RLD ++ FL G + C ++P+R+IPF VVCLLG+N+ +PRQ FDL++ P Sbjct: 636 RGRLDGAGGTRGFLDGGLTFCNMLPLRTIPFPVVCLLGLNNDDFPRQEPAADFDLLAAAP 695 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 + GDR RR DDR++FLE+L++A+++LYISY+GRS++DN PSVLV EL+ + Sbjct: 696 RPGDRCRRRDDRFMFLESLLAARRRLYISYVGRSLRDNRSLPPSVLVDELLTCLAAM--S 753 Query: 762 PGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ--PGERQSYAREWL------------ 807 P N + RV A T H PF P+ +Q G SYARE+L Sbjct: 754 PKAAGANDEAHRQRVAARFTVEHPLQPFSPRYFQNTAGPLFSYAREYLPPPASPDAAPAT 813 Query: 808 ---PAASQAGKAHSEFVQPLPF--TLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 P A A + V P + T + L L F+ HP + + RL + + Sbjct: 814 VSGPRAQLPAAADHDSVPPAAWMSTTSTAISLADLHDFFRHPAGWYGRRRLGLLPPQQQP 873 Query: 863 EIPDTEPFILEGLSRYQINQQ--------LLNALVEQDDAERLFRRFRAAGDLPYGAFGE 914 D +P L+ L RY+I + L + + + L+++ RA G+LP G + Sbjct: 874 AGVDRQPLELDNLDRYRIGSRLLQQPALLLPDGAAGEPPWQALYQQLRAGGELPPGRAAQ 933 Query: 915 IFWETQCQEMQQLADRVI--ACRQPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSL 971 ++Q LA + + + +DLA + ++++G L Q LLRW PS Sbjct: 934 PALRELVADLQPLATFLAGNPGGKTLPPLVLDLALADNLRLSGELSQRATAALLRWSPSR 993 Query: 972 LSVAQGMQLWLEHLVYCASGGNGE--SRLFLRKDGEWR-----FPPLAAEQALHYLSQLI 1024 S + WL+HL CA + + + +D + F PL++E A L++L+ Sbjct: 994 ASAKLWLAGWLDHLALCAQAPEDQDWQTIMVGRDQQNGADIRIFRPLSSELARELLTKLL 1053 Query: 1025 EGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRG- 1083 + G PL P S ++ AQ ++ K QA+ G+ RG Sbjct: 1054 ALFVAGQQGPLPFFPRSAYEFVAKTMTAQEESQE------AKGWQAARQAFYGDGYQRGA 1107 Query: 1084 --EGDDIWYQRLW------RQLTPETMEAIVEQSQRFLLPLFR 1118 E D + + L+ E ++ PL + Sbjct: 1108 PPESADFYVETLFFGPSGRSPAATELPPGFAATARLVYEPLLQ 1150 >UniRef50_B0TXZ0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Francisella philomiragia RepID=B0TXZ0_FRAP2 Length = 1100 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 282/1164 (24%), Positives = 516/1164 (44%), Gaps = 110/1164 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L Y SN+L+ L ++ +++ E+ D F P ++V S GM WL M L+Q IA N+ Sbjct: 3 LYTYPSNKLEYLVQVLSKLLDVEK-KDFFTPTQLIVGSRGMQHWLSMQLAQYRNIAMNLK 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 + + +I D+ + + + A+ K ++W++ L + + L+ Y + Sbjct: 62 YDMINGYILDICYELTAKQEYKKAYTKDILAWRIFRSLDSINNPK----LQEYYHNS--D 115 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG--LGEAQAWQAPLWKALVEYTHQL 179 K +QLS K A +F Y++YR +WL +WE G + + WQ LW+ALV+ Sbjct: 116 LKKYQLSVKIAQVFTMYIMYRAEWLQKWEQGEYINPAKPENDEDWQMQLWQALVKEVQDT 175 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 + ++ L +P ++I G++ + P L + L K+I++++L Sbjct: 176 PYK------VQAEALQKLNQQNLEKLNIPKDIYIFGVNTISPKNLSFVFELAKYIDVNIL 229 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 + NPC YW D+ A L + PL Sbjct: 230 YINPCSEYWYDLHKSKISAWLDSNDYELQ-----------------------------PL 260 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGV--NIEE 357 LA+ G+ G+++ L + + QEL+ F ++L D +L + + Sbjct: 261 LANLGQQGKEFFNQLLENQEKQELEVFEKFDKNSL------DFEKLADNNQTQLVSLQRN 314 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 D + D SI+ + CHSP REV++LHD+LL M++ DP++ PRDI+VM +I+ Sbjct: 315 LLELDCQNHAKQKDLSISINSCHSPLREVQILHDKLLDMIKADPSIKPRDILVMCPNIED 374 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 YSP+I +VF D+ LP +I+DR S P+ +FI LL LP+S F +L L VP Sbjct: 375 YSPYIDSVFSRFSTDKKLPCSIADRTLLDSEPLAASFIELLQLPESNFEVNKILDYLSVP 434 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + +F IT+E L +R W+ ES I + +W +GL R++ G++ Sbjct: 435 AIQQKFKITDEQLETIRYWLKESCIHHSNNGQ-----------TFSWSWGLKRLMFGFSY 483 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASL--LMQL------------------------ 571 + LP ++ + G + L QL Sbjct: 484 SDSNHIVDLKLPRQSATATPSYQRGISINYQELDQLMTIPVIEGSEIAELGGLYELLELL 543 Query: 572 NIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 + + L + R LE W +M + F + + I+ + + Sbjct: 544 EKYSQELLKPRSLEAWQDYLLEMFDDVFNVTNDEQYIAKKIKDIIVKTVTTAKDVLLTEE 603 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + L +R L +L + I+ FL G V C++ PMR++PF+V+ +LG+N+G +PRQ + Sbjct: 604 IDLYTIRYCLISQLSEPIINNHFLNGKVTFCSMTPMRNVPFRVIAMLGLNNGKFPRQESA 663 Query: 692 LGFDLMSQKPK-RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 + FDLM++ + +GDR++RDDDRYLFLE + SA+ LY+SYIGRS++ N E+ PS++++E Sbjct: 664 ISFDLMARLGRVKGDRTKRDDDRYLFLETITSARDYLYLSYIGRSVKTNVEQQPSLILKE 723 Query: 751 LIDYIGQSH-YLPGDEALNCDESEARVKAHL---TCLHTRMPFDPQNYQPGERQSYAREW 806 LI Y+ +++ + D + ++ + ++ + PF + Y E +SY W Sbjct: 724 LISYLQKNYSWHTLDNVIKDNKLPKSERKNIISDIKEYPLHPFSSKCY-ADEYRSYDEAW 782 Query: 807 LPAASQAGKAHSEF-VQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 L K + + LP+++ + L + + P++A+ L++ + E+ Sbjct: 783 LKLLQSEPKVFYDSKLLSNSVNLPKSLSISKLVKIFEDPIKAYTNYGLELYLEDDFEELE 842 Query: 866 DTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 D+EPF + L +++ Q LLN L D E + + +G LP E + + +Q Sbjct: 843 DSEPFDINSLDKHKFKQDLLNTLENNKDKELTIKTAKLSGKLPESVLTENEINKEVESIQ 902 Query: 926 QLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 +L D+ + ++ ++ + + +L + S + +L+L L Sbjct: 903 KLLDKANLANYESKYFHQEILGYELEANCHIKD---NQVLLYTSSTFGIKHRFELYLTAL 959 Query: 986 VYCASGGNGESRLFLRKDG--------EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 + S S ++ D + L A L + + + +S P LV Sbjct: 960 LVALSEQQDISATYVYFDKDKNQADTNTFAISHLG---AKQLLEKYLSNAEKIVSKPSLV 1016 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQL 1097 + A ++ + Q + T ++ + + + + ++ Y +L+ Sbjct: 1017 HLDLAKAIMEYVKENQKKDASLVEKTTKQKQQAWENVIKSSETNYKALENNSYFKLFYSE 1076 Query: 1098 TPETMEAIVEQSQRFLLPLFRFNQ 1121 P+ + +Q + + N+ Sbjct: 1077 HPKIEDFEGQQIYQDFFEVINENK 1100 >UniRef50_A1KCB8 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease n=3 Tax=Betaproteobacteria RepID=A1KCB8_AZOSB Length = 1139 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 333/1186 (28%), Positives = 520/1186 (43%), Gaps = 129/1186 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M + SNR + L+A++ + ER PF ++V S+ + + +++ +++ G+ AN+ Sbjct: 1 MFSIVFSNRYECLQAMLLERLAAERP-GPFGKRHVVVPSSALRRDVELAVAEHEGVCANV 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDF----TLLRHYLT 116 +F A ++W V+ E+P S F ++W++ LL D+ L HYL Sbjct: 60 EFSYLAQWLWTQIGHVV-EVPARSPFAPALLAWRVHALLDPAAPAGDWVAAHPRLAHYLA 118 Query: 117 DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL------VEGLGEAQAWQAPLWK 170 +D R F+L+ + A +FD YL YR WL W G E +AWQA LW+ Sbjct: 119 G-ADARMRFELAERIARVFDHYLTYRAHWLESWARGERARLGEATEAERADEAWQAALWR 177 Query: 171 ALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL 230 + + L + H A L+ R + ++ GLP V + G+ ALPP+YL L+ L Sbjct: 178 HIRD---GLALRQEHPAALFLRRVAGMDERALAAAGLPQTVHVFGLPALPPLYLAILREL 234 Query: 231 GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSD 290 + +++ L NPCR +W +I DP L+ L RQ +D Sbjct: 235 ARVVDVRLYALNPCREFWFEIVDPRRLSWLAARQ------------------------AD 270 Query: 291 GEQDVGNPLLASWGKLGRDYIYLLSDLE-SSQELDAFVDVTPDNLLHNIQSDILELENRA 349 + GN LLA+WG+ + +I LL + E E F +LL + + IL++E Sbjct: 271 MFHETGNRLLAAWGQQTQAHIGLLFEGEREVVEEALFEPHPGRHLLARLHNAILDMEEL- 329 Query: 350 VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE----DPTLTP 405 L D SI HVCHS RE+EVLHDRLL +++ L P Sbjct: 330 -----------EPGSVALAANDRSIELHVCHSRTRELEVLHDRLLDLMKAAAKRGEPLRP 378 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 +I+V+ D+D+ +P I+AVFG+APA R +P+ I+ Q +PV A LL+L R Sbjct: 379 DEIVVLTPDLDATAPLIEAVFGTAPAARRIPWRITGLGGTQENPVAAALDRLLALVAGRL 438 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE---LPATGQH 522 + V LL PV+AARF + E L + W+ +GIRWG+D ++ + A G H Sbjct: 439 PASAVFDLLQQPVVAARFGLGEGDLETIHDWMRAAGIRWGLDAEHAAAAGGVPVQACGGH 498 Query: 523 TWRFGLTRMLLGYAMESAQG--EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 T GL R+ LG+A A + + + G A +G L + L R L + Sbjct: 499 TLDAGLDRLFLGWAAGDAATAAPFAGFIGAGAAEGNAALALGRLWRYVDTLRGLRADLQR 558 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA----VPLSL 636 + W L + E A+ + + A+ A D +PL++ Sbjct: 559 PQQAAGWRRALDSALTRLVGDEPEWAEALREVREAIVALTQAMAAAATDDGDAPAIPLAV 618 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 + L +LD G V L +R +P++VVC++G++ G++P P FDL Sbjct: 619 VHPALIAQLDD-PARGGVPGGTVTFSALSSLRGLPYRVVCVVGLDQGLFPGSDRPAEFDL 677 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 M+ +P+RGDR RR DDR LFL+ L+SA++ L++S++GRS++D S PSVLV EL D + Sbjct: 678 MAARPERGDRQRRHDDRNLFLDVLLSAREVLHLSHVGRSVRDGSALPPSVLVDELFDVLA 737 Query: 757 QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ-----SYAREWL---- 807 + + + A + LT H F + + P + SY E+ Sbjct: 738 AACAADPGKP----DDLAAARRRLTVEHPLQAFSAEYFLPQGERDPRLVSYHEEYAAALA 793 Query: 808 ----------------------PAASQAGKAHSEFVQPLPFTLPE--TVPLETLQRFWAH 843 + G F PLP PE V L L RF+ + Sbjct: 794 ARLGAPLRDADDDALVALAEEGDEVAVDGARVPFFDAPLPPPGPEWREVGLPQLIRFFRN 853 Query: 844 PVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ--DDAERLFRRF 901 P R + RL + ++E+ D EP + + L R + ++LL AL+ D E L Sbjct: 854 PSRYLLRDRLGLALPEGEAELEDVEPMVPDFLGRQALAERLLPALLGATVPDEEALLALA 913 Query: 902 RAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG------QSMEIDLACNGVQITGW 955 RA G+ P GA GE + ++ A V A ++ DL + Sbjct: 914 RAGGEYPAGALGEGALRRELAQLTVFAAGVRAELPARPLPPHVPTLAFDLDGEPWTLGAA 973 Query: 956 LPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES--RLFLRKDGEWRFPPLAA 1013 ++P GLLR R + WL HLV CA+ + L +DG RF + Sbjct: 974 FGDLRPQGLLRQRYDDCRPVDYLAAWLAHLVLCAAPAPDVACETTLLARDGRCRFVAVPP 1033 Query: 1014 EQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQ 1073 A L+ + YR G+ PL P++ A+ + ++ KA ++ Sbjct: 1034 ATAHALLADCLRLYRAGLLRPLHFFPKAAWAYA------------VNGESMGKAYARWQG 1081 Query: 1074 AYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 GN E D Y+ R + + + R L PL Sbjct: 1082 ---GNRPAFAESADPAYRLALRGVADPLADDFAALASRVLGPLLDH 1124 >UniRef50_B1XZ24 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZ24_LEPCP Length = 1294 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 375/1273 (29%), Positives = 549/1273 (43%), Gaps = 185/1273 (14%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + H NRL++L + + L P E E++LVQS G+A+WL+M+L+Q+ G+ A Sbjct: 13 LLILHGNRLELLLETVLQWLAAHPLA-PLEEEVLLVQSNGIAEWLKMSLAQRVGVCAATR 71 Query: 62 FPLPASFIWDMFVRVLPEI--PKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD-- 117 LPA F+W + +L P S +K ++W+LM +LP L R F L +L Sbjct: 72 VELPARFLWRCYRAMLGRAGAPARSPLDKGPLAWRLMRVLPALAGRPGFEPLAQFLAGPG 131 Query: 118 ------DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV----------EGLGEA 161 D + QL+ + ADL+DQY VYR DWL W G V L Sbjct: 132 GPTPDAAPDLPRRLQLAQRLADLYDQYQVYRADWLIDWAAGRAVLTNPCTGAAPVALDAE 191 Query: 162 QAWQAPLWKALVEYTHQLGQPRW---------------HRANLYQRFIETLESATTCPPG 206 Q WQA LW+AL+ + R ++ RF+ L Sbjct: 192 QRWQALLWQALIRDLGTTDADQPADAPAESAALAVLAGTRPAVHARFVAALAQDEAPQRP 251 Query: 207 LPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRR 266 LP RV + G S LP L+AL AL H ++ L NPCR++W D+ D L + R++ Sbjct: 252 LPRRVVLFGHSHLPAQTLEALAALAGHTQVILAVPNPCRFHWADMIDGRELLRSAHRRQP 311 Query: 267 HSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ----- 321 R+ + G L +D + +PLLA+WG+ GRD++ LL E Sbjct: 312 ----------LRNGRDLGALDIADAHAE-AHPLLAAWGRQGRDFLRLLDAFEEQLGGAEA 360 Query: 322 --------ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSS 373 +D F D D LL +Q+ I + A + R D S Sbjct: 361 GALRGELPRVDLFDDEPGDTLLAQVQARIRDAVPLAEHAALNGPPLDAAAARQRAATDRS 420 Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEE-DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD 432 I FH+CHS REVEVLHD+LLA L +L PRDI+VMV D++ Y+P ++AVFG PA Sbjct: 421 IEFHLCHSAMREVEVLHDQLLARLAAAKGSLAPRDIVVMVPDVEVYAPLVRAVFGQYPAS 480 Query: 433 --RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGL 490 R++PY I+D R R HP+L A LL + + R + ++ L+DV LA RF + + L Sbjct: 481 DARHIPYDIADLRPRGHHPLLLALEWLLRITEQRCTASELRELIDVAALANRFGLEGDDL 540 Query: 491 RYLRQWVNESGIRWGIDDDNVRELELPATGQ-HTWRFGLTRMLLGYAMESAQG-----EW 544 L +W++ +G+RWG+D ++ L+L A G+ +TW FGL RMLLGYA+ W Sbjct: 541 PTLGRWLDGAGVRWGLDAEHRASLDLAACGEANTWAFGLRRMLLGYAVGDDPAATPGEPW 600 Query: 545 QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAE 604 + PY E GL A + G LA L+ L W R +W R +L AFF P E Sbjct: 601 HGIAPYAEVGGLEASIAGALAELVEALQRWWREARTAATPADWDARARALLAAFFRPATE 660 Query: 605 TEAAMTLIEQQWQ-AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICT 663 E + A Y +AVPL++LR+ +D+ + RFLAG V CT Sbjct: 661 DERLLLAALHDALAQWREACDEAGYAEAVPLAVLREAWLGTVDEPGLRSRFLAGGVTFCT 720 Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALI 721 LMPMR+IPF+ VCLLGMN+G YPR+ FDL++ + + GDR+RRDDDR L LEAL+ Sbjct: 721 LMPMRAIPFQGVCLLGMNEGDYPRRGVRSDFDLLAAPGQRRPGDRARRDDDRMLMLEALL 780 Query: 722 SAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLT 781 SA+ +L++S+IGRS++DN+ + PSVLV +L DY+ P + L+ Sbjct: 781 SARAQLHVSWIGRSVRDNTAQPPSVLVAQLRDYLAAGWGRP-------------LVDALS 827 Query: 782 CLHTRMPFDPQNYQPGERQ---------------------------SYAREWLPAASQA- 813 H PF + ++ Q +YAREW A ++ Sbjct: 828 VEHPLQPFSRRYFEQTVEQGEPVDGPADETGDETGNDTAALRRGLLTYAREWRAAHARED 887 Query: 814 ----------GKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 +P P P + L L RF +PV RL V D Sbjct: 888 AAAAASDPLTAAPTPIDRRPAPADQP-PLKLAMLTRFLRNPVADHLNERLGVRLALADEA 946 Query: 864 IPDTEPFILEGLSRYQINQQLLN-----------------------ALVEQDDAERLFRR 900 + D EP L L + ++L+ A Q + Sbjct: 947 LADDEPLGLHALDESILLRRLVEQGDVQTAQLPASAPAADPESDADAARLQRALQDGSLS 1006 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADR------VIACRQPGQSMEIDLAC---NGVQ 951 + G LP GE + + ++ + + R Q + + L +Q Sbjct: 1007 LQRQGILPLAGLGERWQQAFVRQSLPMLAQWRIWQEAAPERAAPQPLNLALPLADGGALQ 1066 Query: 952 ITGWLPQVQ---PDGLLRW--------------------RPSLLSVAQGMQLWLEHLVYC 988 I WL +Q G L W + + + + WL ++ Sbjct: 1067 IDDWLDGLQIEATTGALLWLDLQASRLCAKPGKKDQGKGKAGPVRPDKLYRAWLV-MLAA 1125 Query: 989 ASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKT 1048 + G + + +D P AE A L+ L + APL + P S A L Sbjct: 1126 GAAGIALTGRIVGRDVTLELSPPPAEVARAALADLTGAWWASWRAPLAIAPRSALAALAE 1185 Query: 1049 CYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVR---GEGDDIWYQRLWRQLTP--ETME 1103 + A + Y+G R E D+ R++ + Sbjct: 1186 APVLADADPSGPRPWPLDAWIAAERTYDGGTFTRRVPPESDEPSLARVFADWEALGARAD 1245 Query: 1104 AIVEQSQRFLLPL 1116 ++R PL Sbjct: 1246 EFQHWAERLYRPL 1258 >UniRef50_C3X2X1 Exodeoxyribonuclease V n=2 Tax=Oxalobacter formigenes RepID=C3X2X1_OXAFO Length = 1129 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 314/1177 (26%), Positives = 517/1177 (43%), Gaps = 127/1177 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML + SNR DVL + + F E ++V S + + L + ++ G+ A + Sbjct: 12 MLNLNLSNRFDVLLQTFCENLAKRP-ATVFTAEQVIVPSAAIKRKLMLAIADTAGVCAGV 70 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +F A ++W + + E+P+ S F+ +SW+++ LL + + + YL+ D Sbjct: 71 EFSFLAQWLWRQIGKFV-EVPETSPFSSSVLSWRILRLLEEPGFAAPYPRIAGYLS-RCD 128 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL----------GEAQAWQAPLWK 170 + F L+ + A LF+QY++ RP+WLA W G VE + GE QAWQA LW+ Sbjct: 129 EIMRFDLACRIASLFEQYVLSRPEWLAAWSKGETVEIVRKGHPKQAVAGEDQAWQAALWR 188 Query: 171 ALVEYTHQLGQPRWHRANLYQRFIETLESA-TTCPPGLPSRVFICGISALPPVYLQALQA 229 + E T L + +RF++ LE+ LP RV + ++ P ++ L Sbjct: 189 KIAEETGTLEEEPA------ERFLKMLETGGEEMAARLPERVHLFLEPSVAPYHVGILNR 242 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 LG+ ++I L NPCR YW +I D LA L RQ+ Sbjct: 243 LGRWMDIELYVVNPCREYWFEIVDSRRLAWLSKRQK------------------------ 278 Query: 290 DGEQDVGNPLLASWGKLGRDYIY-LLSDLES-SQELDAFVD----VTPDNLLHNIQSDIL 343 D + GN LLASWGK R + LL+ LE +E D F+ P+ LL +Q IL Sbjct: 279 DLYHETGNRLLASWGKESRASLESLLARLEPVGRENDGFISCAERARPETLLSRLQDAIL 338 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 +L ++ D S+ H+ HS RE+E+LHD+LL Sbjct: 339 DLTELEAGSLSHLG------------RDGSLEIHLAHSRTREIEILHDQLLRRFASGDPP 386 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 P DI+V+ D+D +P I+AVF + +PY I+ R+ + +PV A + LL+L S Sbjct: 387 GPGDILVVSPDLDEIAPMIEAVFSHNRSAPQIPYVITGRKDSRINPVSRALLDLLALASS 446 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 RF + V+ +L +P + A F L +R W+ ++GI W ID + RE LP H+ Sbjct: 447 RFTAAGVIDVLMLPEIGATFGFGG-DLDKIRGWLGDAGICWAIDGAHKREFGLPEEDGHS 505 Query: 524 WRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 + GL R+ L YA+ + + LP ++G A +G L + + +R L+ + Sbjct: 506 FHDGLHRLFLAYALPDGRRVPFADRLPAGHAAGTQAAGLGQLWRFVEAVRQLKRDLSHPK 565 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 W +L+AF ET A + + + A + R L Sbjct: 566 TAAGWWQTWHGILDAFVTVTPETLEADREVRMRIAGLRDAMTQAGEAFETGFIIARHALE 625 Query: 643 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 + L+ AG V + +R++PF V ++G++DGVYP ++ FDL+ P+ Sbjct: 626 RALEGAGQG-SVPAGVVTFAPMDSLRNLPFGHVYVIGLDDGVYPAEVRQQEFDLIRLAPR 684 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 +GD + D+ +FL+ ++SA + LY+S GR+I+DNS + PS+L+ EL++ + + Sbjct: 685 KGDCLPHETDKNVFLDLVLSAGKSLYLSCTGRNIRDNSPKPPSILIAELLEVLEPALAEK 744 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNY--QPGERQSYAREWLPAASQAGKAHSEF 820 D E+ + L H PF P + + ER R L A K Sbjct: 745 TD-----GEARLAAREKLLVEHPLQPFSPDYFNGRADERMVSFRSDLCDALNLKKEKINI 799 Query: 821 VQPLPFTLPE------------------------------TVPLETLQRFWAHPVRAFFQ 850 + L + E V L+ L RF+ HP R + Sbjct: 800 KEELEYDTSEDGLDNDIGDELAAGTPFFRAPLAFPDASWRDVLLDDLIRFFCHPNRYLMR 859 Query: 851 MRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYG 910 RL ++F ++ E+ EPF ++ +R ++ +LL ++ E + R A + P G Sbjct: 860 SRLGLDFPRKEKELASDEPFTVDRTARRRLADRLLPLYLDGMAPEDIARSAAAGNEFPAG 919 Query: 911 AFGEIFWETQCQEMQQLADRVIACRQPG------QSMEIDLACNGVQITGWLPQVQPDGL 964 A G +++ E+ A + A + G +++E DL +++G L V+ GL Sbjct: 920 AMGAQQRQSELMELSAFAQALSADLKTGFVAPVSRTLEFDLGGEIWRLSGSLSDVRKTGL 979 Query: 965 LRWRPSLLSVAQGMQLWLEHLVY--CASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQ 1022 +R+R + + W+EHL CA G S ++ +DG+ P +A L Sbjct: 980 IRYRYDEGAPRDYLAAWIEHLFLNACAPEGVALSSVWHFRDGKTVLEPYG--RARAVLRD 1037 Query: 1023 LIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVR 1082 L++ YR G++ PL P S ++++ A KA + A + R Sbjct: 1038 LMDIYRTGLNRPLHFFPRSAWEFVQSGGHAG------------KANGIWRPA---DGSRR 1082 Query: 1083 GEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 GE D + R + + R PL Sbjct: 1083 GESADAFNWLAMRGVREPLDADFAALANRVFGPLLAH 1119 >UniRef50_C4GHY2 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHY2_9NEIS Length = 1184 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 323/1231 (26%), Positives = 533/1231 (43%), Gaps = 172/1231 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNRL+ + ++ I + L++PF E I++QS GM +++ L+++ GIAAN+ Sbjct: 1 MLHLYQSNRLEDIAQMLARIQQVAPLENPFAAEEIVIQSQGMRRYISQYLARETGIAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLL--PQLLEREDFTLLRHYLTD- 117 F LPA W + +P+IP S F+ + M W+L+ L + + DF R L Sbjct: 61 RFSLPAGLAWRLMREAMPDIPALSPFSSEVMRWRLLALFQSDEFAQSPDFAAARQALAPY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL-----GEAQAWQAPLWKA 171 + +QL+ + AD+FDQYLVYRPDW+ W G LV L + Q WQA LW+ Sbjct: 121 LHNGDYAAYQLAGQLADVFDQYLVYRPDWIETWAAGKLVPELAHSRSADTQIWQAQLWQH 180 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 L Q HR L++ +++L P LP R F+ GI+ L P+YLQ L L Sbjct: 181 L----DDGKQGAPHRVQLWRTLMQSLARPN---PRLPQRYFVFGIATLAPMYLQLLAQLA 233 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 +H ++H+ NP + YWG+I +PA + + Sbjct: 234 QHSQVHIFALNPSQAYWGNIIEPAQILNQ--------------------------TQTAD 267 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFV-DVTPDNLLHNIQSDILELENRAV 350 G+PLLAS GK GRD+ L+++E+ +LD++ + +LLH+IQ I Sbjct: 268 LSYQGHPLLASLGKQGRDFFNELAEVEAQLDLDSYTSEPQSPSLLHSIQYHIQSQTLPET 327 Query: 351 AGVN------------------IEEFSRSDNKRPLDPLDSSIT----------------- 375 A N ++ + L P S+ Sbjct: 328 AHANGWLAAHQDYVHSQPRFQAAQQQLNQQYQTALAPYQGSLKTNAVSFGEAKTPNTPNT 387 Query: 376 ------FHVCHSP----QREVEVLHDR-------------------------------LL 394 F C +P R++++ H + LL Sbjct: 388 NETPDLFSGCLTPEQNAIRQIQLTHQQNLALAQLNADPSIQIHSAHSPLRELQILKDQLL 447 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 +L + P P DI ++ I+ Y+P+I+A+FG + LPY++SD + P+L+A Sbjct: 448 VLLAQHPDWQPHDIAILTPHIEPYTPYIEAIFGKH-SPYPLPYSLSDTQIAHRQPLLDAL 506 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 L+L DSRF ++ ++ALLD ++ A +T + L + + + IRWG D + Sbjct: 507 AQTLALMDSRFEADKLIALLDNELILATHRLTRDDLPLIHDTIAQLNIRWGSDAAQRSQH 566 Query: 515 ELPATGQHTWRFGLTRMLLGYAMES--AQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 Q+TW+ GL R++LG+ + A W ++ P+ + A L A+L+ L Sbjct: 567 SSQPNAQYTWQQGLERLVLGFMLPENPANPLWHNIAPHSSNPSHQAPL-SRFAALVATLI 625 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETE-AAMTLIEQQWQAIIAEGLGAQYGDA 631 + + +W +++N P ++ + A +E E A Y Sbjct: 626 RHQNQWQTPATVPQWNERIHNLMNDLITPQSDDDHQAHQQLEAALAQWQNEAQTAHYTQT 685 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + ++ L Q L + FL G + IC+++PMRS+PFKV+CLLG+NDG YPR Sbjct: 686 INQTIAIQHLNQYLASQN-DAGFLRGGITICSMVPMRSLPFKVLCLLGLNDGDYPRNTKA 744 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 +DL++Q P++GDR+RRDDDRYLFLEA++SA++ LY+SYIG+ I+ + ER PS L+ EL Sbjct: 745 APYDLIAQHPQKGDRARRDDDRYLFLEAILSAREVLYLSYIGKDIRTDEERAPSTLIGEL 804 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY--------QPGERQSYA 803 ID I +P ++ + H H PF P+ Y + S Sbjct: 805 IDTIAALTQIPANQ----------LNQHWITQHPLQPFSPKYYTGSLKNHSSAAKLISTR 854 Query: 804 REWLPAASQAGKAHSEFVQ---PLPFTLPE-TVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 +++ A + + F+Q P T + +P T ++W +P R + + L Sbjct: 855 QDYAQALNTPQPPAAPFLQNYTPAHETQEQPEIPQATFLQYWRNPNRQWLKHTLGWQAPH 914 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 + P +EPF ++ + Q++ A D L A LP G F + + Sbjct: 915 TQAAHPSSEPFTID--NPRQLDTAYTQARQHNQDFAELATTLTAQSQLPTGEFNTLIAQE 972 Query: 920 QCQEMQQLA-DRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRW---------RP 969 Q L + + + R P Q+ + L + L G + + Sbjct: 973 QAIAAAGLNSELIQSPRHPDQTGSLKLPTG--TLNYTLSHNHQHGQILYAHQFLPNHNTQ 1030 Query: 970 SLLSVAQGMQLWLEHLVYCASGGN--GESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 + L + ++L L HL+Y A+ + +L PP+A E A L+Q + Y Sbjct: 1031 ATLQASDSIELLLRHLIYSAAAPQPTPQPTHYLSLHQSITLPPIAQETAQATLAQWLAAY 1090 Query: 1028 REGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDD 1087 ++G P+ P A + Y + KA+ Y + D Sbjct: 1091 QQGQQHPIPFFPRVTLAVARAYYTGKT-------PDWDKAQKAAHAVYHKGYTGFAQADY 1143 Query: 1088 IWYQRLWRQLTPETME--AIVEQSQRFLLPL 1116 + ++ + + ++ PL Sbjct: 1144 PETKLIYGRDDDTPINSPTFRHLTENLFAPL 1174 >UniRef50_Q6ANK2 Related to exodeoxyribonuclease V, gamma chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK2_DESPS Length = 1056 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 309/1132 (27%), Positives = 504/1132 (44%), Gaps = 93/1132 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML ++ SN + L ++ I++RE + F E+ L+QS G+ + + L+ +F N Sbjct: 1 MLHLHISNHTEKLLEILAAIIKREGRANLFAREIFLIQSPGVERTVCQYLADEFKSWCNF 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DF LPA + + + ++ + F Q+ W+L LL + + + + L+ Y++ + Sbjct: 61 DFLLPAGLLRKIASSLYVDL-ETDLFASQTTVWRLEALLRDI-DEDIYLPLKKYVSGEVA 118 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + K +QL+ + A LFDQY + RP LA+W G V + + WQ LW+ LVE Sbjct: 119 ELKRYQLAGQIAQLFDQYQLMRPSMLARWRLGQRVTE-EDCEIWQMHLWQRLVEEF---- 173 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 H+ + + IETLE C LP R+F+ G+ + P++L+ LQAL E+HL Sbjct: 174 PAARHQGEILENIIETLEK-EECQRRLPRRIFVFGLHTMAPLFLKFLQALSSRTEVHLFL 232 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +PCR YWG++ DR L L ++ L + + E+ LL Sbjct: 233 LSPCREYWGEV---------------GRGGDRLLSLEGIRDSGVDLSSYEEEE--PQQLL 275 Query: 301 ASWGKLGRDYIYLLSDLESS-QELDAFVDVT---PDNLLHNIQSDILELENRAVAGVNIE 356 AS G+ GRD+ +L + + + P +LLH +Q DILE AV Sbjct: 276 ASLGRQGRDFQQMLVASAGYSIDSALYQGLGAGSPPSLLHVLQGDILERGRLAVTA---- 331 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 D S+ CHSP RE+ VL D +L +L +D +L RDI+VM DI Sbjct: 332 ------------ARDDSLRIVSCHSPLRELAVLKDHILDLLYKDASLQLRDIVVMAPDIQ 379 Query: 417 SYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y+P I A+F + Y+I+DR Q + V+ F+ L+L RF +VL LL Sbjct: 380 EYAPLIPALFAD------IQYSIADRATGQRNTVMAVFLDYLNLFSGRFGWSEVLDLLRS 433 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 + ++F + E L++WV ESGIRWG+ + +EL LP +TW GL R+LLG+A Sbjct: 434 EHIYSQFSLGEGDFDLLQKWVTESGIRWGLSAEQRQELGLPPLELNTWLAGLQRLLLGFA 493 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 M A + VL Y + G A+ +G L L L + R L EW + + Sbjct: 494 MS-ADTMVEGVLAYSDIEGNSAQALGGLCEFLQVLQGGQELYTTPRLLHEWAELLQGDAE 552 Query: 597 AFFLPDAETE-AAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 F + + + I Y + ++ L Q Q S FL Sbjct: 553 RLFGGEENSAHQELQQILAGLGRGREYQGVLLYSQPIAFQVVMAWLQQASAQVGSSAGFL 612 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL 715 G + C+++PMRSIPF+V+CLLG+N+G +P+Q FDL++ KP+ GDRS R DDRY Sbjct: 613 RGQLTFCSMLPMRSIPFRVICLLGLNEGKFPKQDKQATFDLLASKPELGDRSPRIDDRYQ 672 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 FLEALIS + LY+SY+GRSI++N E PSV++ EL+D + + ++ Sbjct: 673 FLEALISVRDSLYLSYVGRSIKNNGEIPPSVVLCELLDLLECKFAIKPED---------- 722 Query: 776 VKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAASQAGKAHSEFVQPL---PFTLPET 831 + PF + ++ + SY L A + +P P+ Sbjct: 723 ----IVVEQPLHPFSSKYFEGRADLFSYNENCLTLAQKIYGGGGGEERPWWSGNLGRPQE 778 Query: 832 -VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 + L + F+ +P R F L++ DTE F GL RY + Q L+ L+ Sbjct: 779 NIYLADMVSFYKNPQRWFVSRSLEIRLGASSDLPDDTETFSASGLDRYLLEQGLVEDLLA 838 Query: 891 QDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSMEIDLACN 948 + ++ G P G G + ++ E+ + + + Q++ ID Sbjct: 839 GREVADIYHGLAIEGRWPQGTPGSLLFKKLLTELDEFTNSIRQIDPGPIIQTLPIDQRIG 898 Query: 949 GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRF 1008 ++ G + ++ +G+ R + ++ WL HLV + + L + KDG +F Sbjct: 899 PYRLLGKVA-LRQNGIFLHRYANRKGKDLLEAWLYHLVAGRERPDIITWL-VCKDGVLKF 956 Query: 1009 PPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKAR 1068 +E L +E + G++ E+ A+ C + Sbjct: 957 SEQPSE---EMLLLYLEHFAFGVNTLSSFQVEAAYAYSLHCQKKSKKTPM---------- 1003 Query: 1069 TKFLQAYEGNMMVRGEGDDIWYQRLW-RQLTPETMEAIVEQSQRFLLPLFRF 1119 + +G++ G + + +LP++ + Sbjct: 1004 QVAEETLKGSVTK---GYEPELALAISGGVEEFLAGEFERYCIELMLPIWEY 1052 >UniRef50_B4RTM0 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Alteromonas macleodii RepID=B4RTM0_ALTMD Length = 1206 Score = 814 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 309/1119 (27%), Positives = 509/1119 (45%), Gaps = 143/1119 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SN+L+ L L+ ++ ++ L D F PE ILV+S GM W+ M ++ K G+A NI Sbjct: 1 MLALYPSNKLEHLSFLLTTLLRQQPL-DVFTPETILVESPGMQHWVSMQMANKQGVAMNI 59 Query: 61 DFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHYLT 116 DFPLP F+W+ VL ++PK+S + ++ ++W++ +L L++ + F + Y Sbjct: 60 DFPLPVRFMWNTARTVLGADKVPKQSPYRREVLTWRIDNVLQDNALMDSDAFEQVNKYWQ 119 Query: 117 ----DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKAL 172 + + QL++ AD+++QYL+YRPDWL +WE + + WQ+ +W+ L Sbjct: 120 SAGSEQEQGLQRLQLATALADVYEQYLLYRPDWLFKWENNER-AVFDDMEVWQSEIWRIL 178 Query: 173 VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 + H A L+Q +E LE+ P LP RV + I+ + P + AL + Sbjct: 179 AKDQ------PLHPARLHQMMLEALEAGNV-PAHLPKRVIVFAINTMAPQLIAFFDALAQ 231 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE 292 HI+IH+ NP YWG+ K + AKLL + + E Sbjct: 232 HIDIHIFHLNPSVNYWGEAKSSSEQAKLLRLEGLKKWM---------------------E 270 Query: 293 QDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDN---------------LLHN 337 +D NPLL + GK GR+ LL++L++ E+ AF ++ LL Sbjct: 271 EDQSNPLLGNLGKQGRELFNLLTELDTF-EISAFDSPDFESAGEGEDEHGQCHSRGLLDY 329 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 I +DIL+ A +S NK D S+T HS REV+VLHD LL L Sbjct: 330 IHNDILQ------AAHPQPLIHQSKNK------DDSVTVMCTHSALREVQVLHDHLLHWL 377 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGS-------APADRYLPYAISDRRARQSHPV 450 +D T TP DI+VM I++Y+PF+ AVF A LP I+DR + P+ Sbjct: 378 SQDKTRTPSDILVMCPAIENYAPFVDAVFHRVGTKSLGATGQVRLPCTIADRSPMDAEPL 437 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 + AF++LL LPDSRF D+L L + + RF ++++ + + W+ ++ I WG++ + Sbjct: 438 IAAFMALLQLPDSRFGVSDILDYLQLDSVQKRFSVSQDDIEQMVVWLKQAHIHWGLNSAH 497 Query: 511 VREL--ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLL 568 + + ++W +G+ R+L+G ++ VL + G A +G L ++ Sbjct: 498 KTAVSEGVNLDDTYSWWWGIRRLLMGMLAPDSEMIVSDVLTIPDVEGQSALTLGKLIEVV 557 Query: 569 MQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQY 628 L + + L Q R E+W + +A F+P + + + LI + + A A Y Sbjct: 558 ALLGEFAQELTQPRTPEQWSKALIALRDACFMPTKDQQQSWDLIAKVAADLAARCEEANY 617 Query: 629 GDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688 + L +RD L R F+ G V +C+++PMRSIPFK VC+LG+ND +PR+ Sbjct: 618 EHELTLRQVRDLLLNRFSSPDAGNHFMTGQVTVCSMLPMRSIPFKKVCILGLNDSEFPRK 677 Query: 689 LAPLGFDLMSQKPKR-GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 +PLG DLM+ +R GDRSRR +DRYLFLEA+IS ++ LY+SY G + +NSER PS++ Sbjct: 678 SSPLGLDLMASDGRRVGDRSRRLEDRYLFLEAIISTRESLYLSYQGNDVTNNSERQPSLV 737 Query: 748 VQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWL 807 + E +D + ++ L PF + G SY WL Sbjct: 738 LAEFMDMLENNYALS--------------LEKYAVHAPLHPFSEPVF-AGALPSYETGWL 782 Query: 808 PAA-----------------------SQAGKAHSEFVQPLPFTLPETVPLETLQ--RFWA 842 A + A ++ Q + + L +Q R + Sbjct: 783 RLADALQHNKFGANAADTNENADVVDTSLDTATADISQSPRALATQALRLSNMQIARAFK 842 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD--------- 893 P+ F RL VN + + ++EPF L RYQ+ + ++ + Sbjct: 843 DPLEHFSIQRLGVNLSQSFTLLENSEPFETNALLRYQVLDAIFSSPERNNSSELDASELT 902 Query: 894 -AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQI 952 +E++ GD+P E + L+ + P + G I Sbjct: 903 YSEQVITFASLRGDIPNNPVAMDEVEMWKEGALALSQAM----GPHDAEPKKAQFQGKYI 958 Query: 953 TGWLPQVQP-DGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKD-------- 1003 T ++ D L+ + + + ++ L++ +S + + Sbjct: 959 TFTTSALEGSDALVELCAGKVDAHRALGFFISQLIFSSSDETTSYTHYPLEIYACSWEKG 1018 Query: 1004 ----GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVL 1038 + +F + E A+ L + + Y +AP V Sbjct: 1019 ETILKKQKFAAVERETAVQLLLFIEQLYMAIYTAPTPVH 1057 >UniRef50_A6DNF3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF3_9BACT Length = 1099 Score = 814 bits (2103), Expect = 0.0, Method: Composition-based stats. Identities = 301/1143 (26%), Positives = 544/1143 (47%), Gaps = 114/1143 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERER------LDDPFEPEMILVQSTGMAQWLQMTLSQKFG 55 +R+ SN+L+VL + + ++ E+ L P +++++QS GMA+W+ M ++ G Sbjct: 1 MRISASNQLEVLVSQLADSLQNEKCRPEELLGRP--NDLVIIQSRGMAKWIDMQIADHNG 58 Query: 56 IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL 115 IA I++P +FI + V+ PKE ++++S++W++ LLP++ + FT++ Y+ Sbjct: 59 IATRIEYPFIRTFISSILVKC-SYSPKEDIWDRESLAWRIFKLLPEIESK--FTIIHDYV 115 Query: 116 TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE-------AQAWQAPL 168 +++ + FQL+ + A L D+Y+VYR DWL W G + +AWQ L Sbjct: 116 K--TNQLRRFQLAEQLASLIDEYMVYRHDWLQSWIQGKAFTQFNQGLEKELKHEAWQIAL 173 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 W+ L E Q A L + + LP R+ I GI+ +PPV++ + Sbjct: 174 WQKLCESAQNSFQ-----AALQNFLLA--DDIQPEVLELPPRIAIFGITNMPPVFVNFFE 226 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 L + ++ L NPC+ YWGDI+ + A Q + R R EN Sbjct: 227 KLSQLTQVTLYHFNPCQEYWGDIRMERFSA--FPLQGKDDLGLRGPIFSRTFENEIPDLP 284 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENR 348 + +G LGRD++ LL + S L+ + LLH IQ+ ILE++ Sbjct: 285 HSLLKSLG--------LLGRDFLNLLIENTSFDTLEHYAPSESSQLLHRIQNGILEMQED 336 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 + D S+ CHSP+RE+E LHD L+ L ++P L P+DI Sbjct: 337 FEDDL---------------VTDDSVKISSCHSPRRELEALHDYLVGSLADNPDLRPQDI 381 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 IVM +I Y+P I+ +F + P + L ++I+D+ R P++ +++ + L SR S Sbjct: 382 IVMAPNIHDYAPHIRNIFSN-PDNMPLDFSITDQELRGR-PLVNSYLKIFELAKSRLSSN 439 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 D+L + + P +R+ + + + +R W+ ++ IRWG D + ELP Q++W+FG Sbjct: 440 DLLEIFENPDFLSRYKLKVDDVHTIRDWIEQARIRWGKDAQQRADWELPEFEQNSWKFGF 499 Query: 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQL-NIWRRGLAQERPLEEW 587 R+L GYA + + + S+L G ++G + + QL +I+ +E+ L+ W Sbjct: 500 DRLLAGYAFDDPE-LYDSILSCP--IGGDGAILGKIKTAADQLFSIYEIITQEEKSLQNW 556 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 +L + F +A+ + +I Q Q + Q + + + L L++ Sbjct: 557 CEYFSFVLKSNFEENADNQNEYNIILTQLQKMSERADLLQMNEVIAAEIAIKSLNSALEE 616 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + S F++ + C+L+PMRSIP KV+C+LG+N+G PR GFDLM++ ++GDR+ Sbjct: 617 QSSSHGFISRGITFCSLLPMRSIPVKVICMLGLNEGQLPRTNHRSGFDLMNKNWRQGDRT 676 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 DDRYLFLE+L+SA++KLY+SY+G+S +DN E PSV++ E ++YI + Sbjct: 677 MSLDDRYLFLESLVSAREKLYLSYVGQSERDNEEIPPSVILAEFMEYIKKI--------- 727 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQ--PGERQSYAREWLPAASQAGKAHSEFVQ--- 822 H F+P+ +Q + S ++ AA K+ + Sbjct: 728 --------APDFQITQHALNAFNPRYFQDEDNDLASLSQLHFRAAQSLLKSREPEREVPA 779 Query: 823 ---PLPFTLPETV---------PLETLQRFWAHPVRAFFQMRLQVNF-RTEDSEIPDTEP 869 LPE + LE L +F+A+ + F + +L + + + SE+P+TE Sbjct: 780 LFCEQELDLPEEIKSQDGFIDLDLEDLAKFFANSAKTFLRCQLGTSLWKDQVSELPETEA 839 Query: 870 FI-LEGLSRYQINQQLLNALVEQD---DAERLFRRFR----AAGDLPYGAFGEIFWETQC 921 F + L +++I L+ AL+ +D D E + + A G LPYG G +E Sbjct: 840 FAQVNALEQFKIKSTLIEALIHKDPDLDEESFKIQMQELVLADGSLPYGLKGIECFEQIY 899 Query: 922 QEMQQLADRVIACRQPGQSMEIDLAC-----NGVQITGWLPQVQPDGLLRWRPSLLSVAQ 976 + +++A++++ + + +++ +++ L + LL + P Sbjct: 900 GDSEKVAEQILLHKGEHKEEQLNFTLTFELSEKIRLNCSLSGIYQQNLLTYHPGKDKFKH 959 Query: 977 GMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 ++ +++L AS + ++ +D ++ + + A L Q++E Y G+ PL Sbjct: 960 LIKHCIKYLAL-ASVEPRKKLHYINQDKAYQIHEI--KDARQSLEQILELYLSGLKKPLA 1016 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 LP + + + + + + A K+ AY+ + D +Q + + Sbjct: 1017 FLPNCFQKYYEQRKLKKP---KEHEVAMGLAEQKW--AYDSYNNAFADSVDNSFQVCFGK 1071 Query: 1097 LTP 1099 P Sbjct: 1072 DFP 1074 >UniRef50_Q14GK3 Exodeoxyribonuclease V gamma chain n=16 Tax=Francisella RepID=Q14GK3_FRAT1 Length = 1079 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 285/1147 (24%), Positives = 515/1147 (44%), Gaps = 122/1147 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L Y SN+L+ L ++ +++ E+ D F P ++V S GM WL M L++ IA N+ Sbjct: 3 LYTYPSNKLEYLVQVLSKLLDVEK-KDLFTPTQLIVGSRGMQHWLNMQLAEYRNIAMNLK 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ-------------------- 101 + + +I D+ + + + A+ K ++W++ LL Sbjct: 62 YDMINGYILDICYELTAKQEYKKAYTKDILAWRVFRLLSSQNQEKNTHSHAGGNLIADGL 121 Query: 102 ---------LLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 R+ ++ DSD +K +QLS K A+ F +Y+ YR +WL +WE Sbjct: 122 SSKDTSLCGYDNRDGWSSKLKEYYQDSDLKK-YQLSVKIAETFSKYISYRSEWLQKWEKD 180 Query: 153 HLVEG--LGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSR 210 + L + WQ +W+ LV+ + A ++ L+ + S Sbjct: 181 EYINPSKLENDEDWQMLIWQNLVKDIAETPYKVQLEA------LQKLDKQNLEKLNISSD 234 Query: 211 VFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFE 270 ++I G++ + P L+ + L K+I +H+L+ NPC YW D+ A L Sbjct: 235 IYIFGVNTISPKNLKFIFELAKYINVHILYINPCSEYWYDLHKSKISAWL---------- 284 Query: 271 DRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVT 330 D + PLLA+ G+ G+++ L + E QEL+ F Sbjct: 285 -------------------DSDDYEIQPLLANLGQQGKEFFNQLLENEQQQELEVFEKFD 325 Query: 331 PDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLH 390 ++L +D N+ D + D SI+ + CHSP REV++LH Sbjct: 326 KESLAFEKLAD----NNQTQLVSLQRNLLELDCQNHTKQKDLSISINSCHSPLREVQILH 381 Query: 391 DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV 450 D+LL M++ DP + PRDI+VM +I+ YSP+I +VF P D+ LP +I+DR S P+ Sbjct: 382 DKLLDMIKADPNIKPRDILVMCPNIEDYSPYIDSVFSRYPTDKKLPCSIADRTLLDSEPL 441 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 +FI LL LP+S F +L L VP + +F IT+E L +R W+ ES I +D Sbjct: 442 AASFIELLQLPESNFEVNKILDYLAVPAIQQKFKITDEQLEAIRYWLKESCIHHSNNDQ- 500 Query: 511 VRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVL-PYDESSGLIAELVGHLASLLM 569 +W +GL R++LG++ + L G +G L LL Sbjct: 501 ----------TFSWSWGLRRLMLGFSYSDSNYIIDDKLMTVPVIEGSEIAELGGLYELLE 550 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYG 629 L + + L + R L W +M + F + + I+ + Sbjct: 551 LLERYSQNLLKPRSLANWQVYLLEMFDDVFDVTNDEQYIAKKIKDIIAKTVTTAKNILLD 610 Query: 630 DAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 + L +R L +L + I+ FL G V C++ PMRS+PF+V+ +LG+N+G +PRQ Sbjct: 611 QEIDLYTIRYCLISQLSEPIINNHFLNGKVTFCSMTPMRSVPFRVIAMLGLNNGKFPRQE 670 Query: 690 APLGFDLMSQ-KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748 + + FDL+++ K+GDR++RDDDRYLFLEA++SA+ LYISYIGRS++ N E+ PS+++ Sbjct: 671 SAISFDLIARLGRKKGDRTKRDDDRYLFLEAILSARDYLYISYIGRSVKTNVEQQPSLIL 730 Query: 749 QELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLP 808 +EL Y+ ++ ++ + F + Y +S+ + WL Sbjct: 731 KELTSYLNLNYDWGKED---------------IKEYPLHAFSSKCYS-DSYRSFDKAWLK 774 Query: 809 AASQAGKA-HSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 + + LP+ + + L + + P++A+ L++ + E+ D+ Sbjct: 775 LLQSEPRGFYDSASLSNCANLPKNLSISKLVKVFDDPIKAYANYALELYLEDDFEELEDS 834 Query: 868 EPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL 927 EPF + L ++++ Q LL ++ D + + + +G LP +I + + + +Q+L Sbjct: 835 EPFDINSLDKHKLKQALLKTFEDEKDKDLTIKTAKLSGKLPESVLTDIEIKEEVENIQKL 894 Query: 928 ADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVY 987 D++ + ++ ++ ++ + ++ PS L++ + +L+L L+ Sbjct: 895 LDKMSLASYESKYFHQEILGYELEANCYIKN---NQIMLSTPSSLNIGKKFELYLIALLV 951 Query: 988 CASGGNGESRLFLRKDG----EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGG 1043 S S ++ + E+R + A L I + + P L + Sbjct: 952 AYSEQRDISAVYYGIEKNQVEEFRVENIEYTTAKGILEHYINQAEQIVVKPQL----AHL 1007 Query: 1044 AWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRL---WRQLTPE 1100 + + D++N+ D Q+A K +++ + N D+ +++ + + Sbjct: 1008 SLAEAICDSKNN----TDKKKQQAWQKVIKSSQHNFKTL--EDNSYFKLFYNKFPTVDDF 1061 Query: 1101 TMEAIVE 1107 E I + Sbjct: 1062 EGEKIYK 1068 >UniRef50_C1ACJ2 Exodeoxyribonuclease V gamma subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ2_GEMAT Length = 1101 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 311/1161 (26%), Positives = 512/1161 (44%), Gaps = 129/1161 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L+V + L A ++ + L PF+ ++++VQS GM +W++ L+++ G AA++ Sbjct: 6 LQVVTGDSPHALLAELDRTLTTWPLS-PFDDDIVVVQSLGMERWVRQQLARRRGCAASLQ 64 Query: 62 FPLPASFIWDMFVRVL----PEIPKESA-----FNKQSMSWKLMTLL--PQLLEREDFTL 110 P PA+F + + P ++ F +++++W+L LL +L + Sbjct: 65 LPFPAAFCRKLAESLAGIGGPGNETDAPTLDKRFEEEALTWRLFALLSDEDMLADAVYAP 124 Query: 111 LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--------LVEGLGEAQ 162 LR +L +D K + L+ + + FD+Y +YRPD L WE G Sbjct: 125 LRAFLEQ-ADPAKRYGLARRVSARFDEYRLYRPDMLLAWEAGGHASVEGPFDTAAENPHA 183 Query: 163 AWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPV 222 AWQ LW+ +++ G+ H A + IE LE A P GLP R+ + GIS LPP+ Sbjct: 184 AWQCALWQQVLQ-----GERPMHFARWFLHTIERLEQAAIRPVGLPDRLSVFGISTLPPL 238 Query: 223 YLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSEN 282 +++ L+A+ + + P DP + + Sbjct: 239 FVRLLKAVSRFAAVRFFVLVP--------ADPQLVGR----------------------- 267 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS--QELDAFVDVTPDNLLHNIQS 340 NPL A +G ++ + LL E + + A D++LH++Q Sbjct: 268 ------------SPNPLTAQFGHASQELLTLLGANEPGGSRHVQA-AMPAEDSVLHHLQR 314 Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 + + + P D S++ H+CHSP RE+EVL D+LL + Sbjct: 315 ALR-------------GSELTPTACLVSPTDRSVSVHICHSPLREMEVLRDQLLDAFAVN 361 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEAFISLL 458 P L P D++VMV D++ Y+P + VFG A + +P+ ++DR + L+A LL Sbjct: 362 PALRPHDVLVMVPDVELYAPLAEVVFGGAMSESRPRIPFRVADRALARESAPLQALELLL 421 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV-RELELP 517 L SR DVL LL VP + R +T + L WV ++GIRWG D D+ +P Sbjct: 422 QLVSSRLGVSDVLHLLSVPSVRRRVGVTPAQVEQLTGWVQQAGIRWGWDADDRVSRFGVP 481 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 + +++WR GL R++ GYAM + +P AEL+G + L Sbjct: 482 SFVENSWRLGLDRLMAGYAMGPVDVLVEGHVPVAGDLVGDAELLGVFVRWVDDLERHLMR 541 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAA-MTLIEQQWQAI-----------IAEGLG 625 L + RPL W V ++ +P+ E A M I + QA+ + E Sbjct: 542 LREARPLSTWSTVLAEVFAWAVVPEGSAEQATMAQIAEAMQALREPSGAPRQRRLREAHD 601 Query: 626 AQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 + V ++RD + LD + + FL G + IC + PMR+IP +V+ +LG++D Y Sbjct: 602 VE-DPEVAFEVVRDWILAALDSDDHATGFLTGGLTICAMKPMRAIPHRVIAMLGLDDRSY 660 Query: 686 PRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 PR+ FDL+ + GDR R DDR L L+ L+ A+ +L++SY+GRS +N+E PS Sbjct: 661 PRRERRPAFDLIGSARRVGDRDPRTDDRQLVLDTLLCAEDRLHLSYVGRSETNNAEIAPS 720 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQS--YA 803 ++V EL+ Y+ + + L H PF + P + ++ Sbjct: 721 IVVAELLQYLQRMVHTVDKAPHPL----------LRVEHRLQPFSTAYFVPTATDTALFS 770 Query: 804 REWLPAASQAGKAHSEFVQPL------PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNF 857 + + AAS P P + L+ L W++P + + L ++ Sbjct: 771 FDDVLAASVRDVTERRKAPPFVARAVTPLHTEGVIALDDLMLAWSNPSQLHAERTLHLSL 830 Query: 858 RTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFW 917 R + D EP +++ L R ++ Q+LLN ++ R A+G+LP G G + Sbjct: 831 RDHRDALDDVEPTVVDALLRTRLQQRLLNEVLHGAGERGATARLSASGELPPGPLGAAWQ 890 Query: 918 ETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQG 977 + Q++ L RV R + + +DL +G Q+ G L + R R + L Sbjct: 891 QRLAQQVDPLLQRVGQPR-FLEPLTVDLRGHGWQLVGRLDYQHAEEQWRVRAATLKPRDV 949 Query: 978 MQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 ++ W+ HL A G G +R+ D E RF P A+ L L++GY+ ++ P+ Sbjct: 950 VRGWIAHLARQAMGVGGTTRVM-ALDQELRFAP--QADAMVLLEALVQGYQRMLAEPMPY 1006 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQL 1097 + A+ K A L+ AR KF G G+ DD + LWR+ Sbjct: 1007 FLAAAVAYRKAIATAS-SGRGAAKPPLEAARAKFA---PGGDYGEGDLDDPYVALLWRER 1062 Query: 1098 TPE--TMEAIVEQSQRFLLPL 1116 P +A V F PL Sbjct: 1063 DPFAHHADAFVALVDAFWEPL 1083 >UniRef50_D2PR48 Exodeoxyribonuclease V, gamma subunit n=12 Tax=Actinomycetales RepID=D2PR48_9ACTO Length = 1102 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 303/1180 (25%), Positives = 499/1180 (42%), Gaps = 143/1180 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG------ 55 L ++ + R DVL + ++ L DPF E+++V + G+ +WL L+ + G Sbjct: 3 LYLHRAERTDVLADGLGELLAT-PLADPFAEELVVVPAKGIERWLSQRLAHRLGAAEGSG 61 Query: 56 --IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 + A + F P S + VL + ++ + +M+W L+ +L + L+ + Sbjct: 62 DGVCAGVRFTSPRS----LVSAVLG-LDQDDPWAADAMAWPLLAVLDESLDDAWCEPVAR 116 Query: 114 YLTDDSD-------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG----EAQ 162 +L + + + ++++ A LF Y V RP L W G +G G + Sbjct: 117 HLGQFDSGAEAELRRGRRYAVAARLARLFAAYAVQRPALLVDWGDGRDTDGRGVTIDDDL 176 Query: 163 AWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPV 222 AWQ LW+ LV+ P H + + Q + LP+R+ + G + LP Sbjct: 177 AWQPELWRRLVDRIDAPPPPARHLSTVAQL------RDRSESLDLPARLSLFGHTRLPLT 230 Query: 223 YLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSEN 282 ++ L AL +H ++HL +P W + Sbjct: 231 EVELLSALAEHRDVHLWLPHPSGELWDRLT---------------------------GRT 263 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDI 342 AG Q +PLLA+ G+ R+ L+ + + + ++LL +Q+D+ Sbjct: 264 AGDRAADTSHQMAEHPLLATLGRDSRELQLALAAV-PAVDRHLPSPAARESLLGWLQNDL 322 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 ++ +RP D S+ H CH R+V+VL D LL ML+ DPT Sbjct: 323 R------------GNKVSAEGRRP-AAEDRSVQVHACHGTARQVDVLRDVLLGMLQADPT 369 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY------LPYAISDRRARQSHPVLEAFIS 456 L PRDI+VM DI++Y+P I A FG DRY L ++DR Q++P+L Sbjct: 370 LEPRDILVMCPDIETYAPLISARFGLGDLDRYGHPAHRLRVQLADRSLTQTNPLLGVASQ 429 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL L SR + VL L + + RF T++ L + WV E+G+RW D + L Sbjct: 430 LLDLAGSRATASQVLDLAETEPVRRRFRFTDDDLDTVTAWVREAGVRWAFDRGDRDRFGL 489 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 Q+TWRFGL R+L G M + W + LP D+ EL G A + +L Sbjct: 490 ADYPQNTWRFGLDRVLAGVTMSADAHAWIGTTLPLDDVGSTRIELAGRFAEYVDRLRAAT 549 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 L +PL WL RD + A+ + + +++ + A G G + L Sbjct: 550 DRLDGTQPLATWLDALRDGIERLTRVGADDGWQVGQVHREFAEVAA-GAGELAVTPLRLP 608 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 +R L+ L F +G + +CT++PMRS+P +VVCLLG++DGV+PR G D Sbjct: 609 DVRSLLSAHLAGRPTRANFRSGSLTVCTMVPMRSVPHRVVCLLGLDDGVFPRFGLADGDD 668 Query: 696 LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI 755 ++++ P G+R R +DR L L+A+++A + L I+Y G + R P+V + EL+D + Sbjct: 669 VLARCPVTGERDVRSEDRQLMLDAILAATESLVITYTGANEYSGQPRPPAVPLGELLDAL 728 Query: 756 GQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-----QSYAREWLPAA 810 ++ +E+ V+ + H PFD +N + G ++ L AA Sbjct: 729 DRT-------------TESPVRETVVVNHPLQPFDRKNLEAGRLGTPGPFTFDPAALVAA 775 Query: 811 SQAGKAHSE----FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD 866 G + +PL E V L L F+ PV+ FF+ L V E + D Sbjct: 776 RVGGGSRPPRPAFLAEPLTLPGGEDVALADLLAFFRDPVKGFFRA-LDVTLPWEVDGVSD 834 Query: 867 TEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQ 926 P ++ L ++ + ++L ++ + G LP G G + Sbjct: 835 AMPVEIDNLEKWSVGDRMLRDMLAGIHPDAALNAEWRRGTLPPGRLGWRTATDLRDIARG 894 Query: 927 LADRVIACRQPGQS---MEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLE 983 LA RQ G + +++DL G ++TG +P V L+ S L Q + W++ Sbjct: 895 LAVAAYPHRQGGATAYDVDVDL-GGGRRLTGTVPGVHGYRLVSVSYSRLDAKQLLTSWIQ 953 Query: 984 HLVYCASGGNGE-SRLFLRKDGEWR------FPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 L A+ + + L + + R F P+ A QA L+ LI Y G PL Sbjct: 954 LLALSANDEDHNWTALAIGRPRSGRTPASRLFGPVGA-QARTLLADLISVYDGGRREPLP 1012 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 + ++ AW + DD + A ++ A GE D + R+W Sbjct: 1013 LPLKTSFAWCQARRT--------DDEPMIAAGRRWRPA-----NYDGENADPAHVRVWGP 1059 Query: 1097 LTPETM---------------EAIVEQSQRFLLPLFRFNQ 1121 P + + + R P+ RF Q Sbjct: 1060 NAPLKVLLEPTRPGEQWPGEPTRLGAYAARVWEPMLRFEQ 1099 >UniRef50_D1N1Q2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q2_9BACT Length = 1095 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 329/1160 (28%), Positives = 519/1160 (44%), Gaps = 121/1160 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 +Y SN+L+ L A+ ++ DPF PE ++VQ+ GMA WL+ +++ I AN D Sbjct: 3 FNLYSSNKLEDLAAIFRRMIFDRPGPDPFVPETVVVQTQGMATWLEQEMARDGSIMANFD 62 Query: 62 FPLPASFIWDMFVRVLPEIPKESA------FNKQSMSWKLMTLLPQLLEREDFTLLRHYL 115 P SFI ++LP E+ F+ + +W++ LL + R + L YL Sbjct: 63 MPFLQSFILKTMRQLLPREELEAFNRECRIFSPEVAAWRIFRLLGESAGR--WPELDRYL 120 Query: 116 TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE- 174 T RK QL+ + ADLFDQY VYR D L W G WQ L++ + + Sbjct: 121 TGSEPVRKRRQLAGRIADLFDQYQVYRGDLLEAWRRGEE----PGRYVWQQQLYREIAKG 176 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 +T G +++F E + +P R+ + G+ +PP+YL L+ L Sbjct: 177 FTGPYGW--------FRKFFERVPERDLW-SRVPVRISVFGVGTMPPLYLNFLRHLSAIT 227 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 E++L + NPCR +W D + + +L A + D Sbjct: 228 EVNLFYLNPCREFW-DTYEKRFRDRL----------------------ADKNSGVFENTD 264 Query: 295 VGNPLLASWGKLGRDYIYL---LSDLESSQELDAFVDVTPD----------NLLHNIQSD 341 V NPLL S G GR + L +L + + F P+ +L IQ D Sbjct: 265 VENPLLTSLGAQGRSFFAQTLELPELARVRSAELFRSFVPEKSESLAYPGATMLQTIQED 324 Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE-D 400 IL + R G ++E ++ D SI H CH+ +RE+EVL D L+ + +E + Sbjct: 325 ILRMRRRGPDGDDVEVGR---TRKIDYRRDRSIRVHSCHTIRRELEVLKDELIRLFDESN 381 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 + PRD+IVM DI++Y P+I+AVF + Y ISDR RQ + E F+ LL Sbjct: 382 GAVQPRDVIVMAPDINAYEPYIRAVFNDETFEGR--YGISDRSLRQESLIAETFLQLLRQ 439 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 RF + ++L+LLD P L +F I + + LR+ V +S IRWG D R G Sbjct: 440 ASGRFEASEILSLLDTPALRQKFRIADAEMETLRELVGQSAIRWGYDAAARRRFCDFEFG 499 Query: 521 QHTWRFGLTRMLLGYAMESAQGEW--QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 + +WR G R+LLG+AM + + + LP + G AEL+G S + L Sbjct: 500 EFSWRCGFDRLLLGFAMTAPEDQLVNGEYLPCGNAEGSDAELLGRFVSFVSSLAELGERT 559 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 E W + + ++ FF PD E+ +T + A A + +PL + Sbjct: 560 GNAHSAEAWAQLFHNAVDTFFRPDKESLPEITALRGTIDAFAAAARDGNCDEPLPLEAVT 619 Query: 639 DELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS 698 D+L+ + + FL G + C+++P+RSIP + V LLG+N+G +PR+ LGF++MS Sbjct: 620 DQLSDSFSLVQNNMPFLRGGITFCSMVPLRSIPMQAVALLGLNEGEFPRRDIRLGFNIMS 679 Query: 699 QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 + + GDRSR+ +DRYLFLEAL++A++ L + Y G ER P+V + +LID + S Sbjct: 680 DR-RLGDRSRQMEDRYLFLEALLAARRTLMLFYHGSDPLTLEERPPAVPLADLIDVLKAS 738 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP---GERQSYAREWLPAASQ--- 812 + H+ F+ + + P E + Y+ E+ AA Sbjct: 739 F-----------------RDFEVIRHSLQSFNFRYFDPANGAELRCYSPEYFRAARSLHG 781 Query: 813 --AGKAHSEFVQPL---PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 AG A E P P LP + L L+R + + F + R+ ++FRT+ D Sbjct: 782 YLAGGAEPESRLPFTLRPEPLPPVLELAELERAFLNHPEYFLRNRVGLSFRTDRCTPEDK 841 Query: 868 EPFILEGLSRYQINQQLLNALV---EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEM 924 EPF L+GL YQ+ +LL+ + E E +R A G LP G+ G +ET +++ Sbjct: 842 EPFTLDGLGSYQVRDRLLDWRLSSDEGPSGELAYRLMLAGGQLPLGSAGRNEFETARRQV 901 Query: 925 QQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDG--LLRWRPSLLSVA---QGMQ 979 L A + + NG+ +TG + + PDG L S S + Sbjct: 902 AALTPEQYALLTERHAEPFAVETNGITVTGSM-FLSPDGTTQLFVHGSGSSPKHLLRLRL 960 Query: 980 LWLEHLVYCASGGNGESRLFLRKDG--EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 L V A S F KD P + A L +L+E +R+G+S PL + Sbjct: 961 RHLLLTVRNAGNIPARSLGFFIKDSVEVVELPEFEPDVAEAELGRLLELFRDGLSRPLPL 1020 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR-- 1095 A+ + A+++ + R L ++ + + R +R Sbjct: 1021 A-----AYFSSACSAKDEP--------EAKRRAALAKFDPGPFDFPLDNLEGFHRCFRPE 1067 Query: 1096 QLTPETMEAIVEQSQRFLLP 1115 E +V + + P Sbjct: 1068 DFNDEAFLELVFRCADLIYP 1087 >UniRef50_C8XGX0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGX0_NAKMY Length = 1141 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 287/1147 (25%), Positives = 464/1147 (40%), Gaps = 109/1147 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG------ 55 L V+ + R D A + E DPF +++ V + G+ +WL L+ + G Sbjct: 3 LHVHRAQRADA-LAAALGDLLAEPPADPFGVDVVAVPTRGVERWLTQRLAHRLGTRDGRS 61 Query: 56 --IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 I A + FP P + + + L + + + W L+ + + LL Sbjct: 62 DGICAAVRFPSPTTLVDE-----LAGDRADDPWTPDAAVWPLLAAIEASVHEPWCALLAE 116 Query: 114 YLTDDSDKR-------KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE----AQ 162 +L D + + ++ + A LFD Y +RP+ +A W G +G GE Sbjct: 117 HLGYRGDDAQAEHRRGRRYAVARRIAGLFDGYAEHRPEMVAAWSQGGDDDGWGEPVPADL 176 Query: 163 AWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPV 222 +WQ LW+ L + P A + R +A LP RV + G +ALP Sbjct: 177 SWQPRLWRRLRDRI-DAPDPVATFAQVAARL-----AADPGAVDLPERVSLFGATALPHR 230 Query: 223 YLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSEN 282 + L AL H ++HL +P W + + R+R Sbjct: 231 QVLLLSALAHHRDVHLWLPHPSPVLWDRVGELRPPVPGRIRRRDDPTAGAAT-------- 282 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDI 342 +PLLAS G+ R+ +L+ ++ D P LL +Q D+ Sbjct: 283 --------------HPLLASMGRDVRELRTVLAG-RIDRDTWHRADDPPATLLGRLQRDL 327 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 + + K +D D S+ H H P R+V+VL D ++ +L +DPT Sbjct: 328 SDNRRPGPGMAD---------KPVVDATDDSVRVHAAHGPGRQVDVLRDVVIGLLADDPT 378 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPA------DRYLPYAISDRRARQSHPVLEAFIS 456 L P DI++M DI++++P +Q FG A + L ++DR RQ++P+L Sbjct: 379 LHPADILIMCPDIEAFAPLLQGAFGLADSVPDGHPAHQLQVRLADRALRQTNPLLATLDR 438 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL L SR + DVL + RF ++ L L WV +G RWG+D ++ R L Sbjct: 439 LLDLAGSRVTASDVLDFAAFAPVRHRFGFDDDELSTLADWVAAAGARWGLDAEHRRRYGL 498 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 GQ+TWR L R+LLG M G ++ LP DE +L G LA L+ +L Sbjct: 499 AEYGQNTWRAALDRILLGVCMSDEPGNRLETALPLDEIGSADVDLAGRLAELIDRLATVV 558 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD-AVPL 634 L+ ++ W + + A + + A+ A + L Sbjct: 559 DTLSSRHSVQRWCAELLAGVQSLTSVPARAAWQVAEFRAEVAAVQRHAAAAGSTGLELGL 618 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 + +R LA L F G + +CT+MPMRS+P +V+CLLG++DGV+PR G Sbjct: 619 ADVRALLAGALAGRPTRANFRTGTLTVCTMMPMRSVPHRVICLLGLDDGVFPRGAREDGD 678 Query: 695 DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 DL+ ++P G+R R DR L L+A+++A +KL I+Y G + ++R P+V V EL+D Sbjct: 679 DLLIREPACGERDLRSQDRQLMLDAIVAATEKLVITYSGADERTGAQRPPAVPVGELLDA 738 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-----QSYAREWLPA 809 + + + V+ + H PFD + G ++ L Sbjct: 739 LDDT---------ATTATGGAVRDLVLVRHPLQPFDARTLTAGALGRVGPFTFDPVALGG 789 Query: 810 ASQAGKAHS------EFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 A P P P V L + HP + F + RL V E + Sbjct: 790 ARALAGPRRPAGRLVPAPLPAPDRPPADVELAEVIEVLTHPAKGFLRRRLDVAVPFEQDD 849 Query: 864 IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQE 923 PD P L+ L + + ++L + + + G LP A G E ++ Sbjct: 850 PPDDLPVDLDALQEWGVGDRILRDRLAGVPEQECRQAEWRRGVLPPAALGGRALERVLRD 909 Query: 924 MQQLADRVIACR-QPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLW 981 ++ L DR R P ++E+ + +G ++ G + V GL+ S L+ +Q W Sbjct: 910 VRPLVDRTATLRAAPRHTVEVSVPLPDGRRLRGTVGGVHGIGLVTVSYSKLAPRARLQSW 969 Query: 982 LEHLVYCASGG------NGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPL 1035 L L AS R + L E+A L L+ Y EG+ APL Sbjct: 970 LAFLALTASDPALAWTAAAVGRAERGRPQCATLAALPGERARELLIDLVGLYEEGLRAPL 1029 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR 1095 + ++G + KA+ + + G GE D R+W Sbjct: 1030 PLPLKTGEKYADARRRG---------MDHDKAQDQAAATWTGGKY-PGERQDAANMRVWG 1079 Query: 1096 QLTPETM 1102 + P ++ Sbjct: 1080 RDAPFSV 1086 >UniRef50_Q89AB4 Exodeoxyribonuclease V gamma chain n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX5C_BUCBP Length = 1111 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 271/1125 (24%), Positives = 545/1125 (48%), Gaps = 29/1125 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y S + ++ ++ E L +P E+ +V + QW+++ +++K+ + NI Sbjct: 1 MFTLYKSLKFNLFVKSAFKVILNEPLLNPLTKEIFIVNNKETEQWIKIFIAKKYKVCTNI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F FI ++ + P++ +S F+K S+ WK++ + P + LL ++ ++ Sbjct: 61 KFFKLKHFILNILKQNTPKLYSKSEFSKYSIMWKIINI-PDIQH-----LLTKIVSKNNT 114 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 LF+++S ++LF YL YRPD++ +WE + Q WQ +W +++YT Sbjct: 115 YSTLFKIASSISNLFQLYLKYRPDYIKKWEQKSNIPKTRLKQKWQQIIWMRIIKYTKDAN 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 +P H +NL I+ ++ LP R+FI I+ + P Y L+++ K+ +H + Sbjct: 175 KPILHFSNLLYDSIKKMQRNNFINTKLPVRIFIFNITPITPQYAIFLKSISKYCSVHFFY 234 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 + D + + ++ + +L S+N +++ Sbjct: 235 ATAS---YND--KQMFSTSFIKFKQTQEISNNQLLSLLHSKNKNIIYHEIENFQKNTKFQ 289 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 + W + + LS L + ++ + ++LL +Q+ IL L + + + Sbjct: 290 SYWITYEYEQMLFLS-LIKDKTINLNFKIKQNSLLQYLQNKILNLH-----SIQKKNNEQ 343 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 +NK + D S++ H CH+ RE+EVLH+ LL +L ++ + +D++V+ ++D+Y P Sbjct: 344 ENNKILILKTDKSLSIHSCHTLIREIEVLHNNLLNILNDNNDILFQDVLVISKNLDTYIP 403 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I +F SA + ++P++I+ + + + + L+ LP+ + LL++P L Sbjct: 404 YINQIFNSASSKNFIPFSINYKNIKNIE-FYKTILELIDLPNIELNINKITNLLNIPTLL 462 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 + I E+ + L Q +N++ I+W D+ + L W GL R+ LG + + Sbjct: 463 KKVQINEQEIPILLQIINQTEIQWENDNILSNDW-LSNDITKCWEHGLQRIFLGQIINNI 521 Query: 541 QGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 599 + W++++PY+E S L + L SL+ LN W++ L++ + L W + +LN FF Sbjct: 522 DYKFWENIVPYNEFSTLYYNIFNKLISLISLLNKWKKILSKPKFLSHWDITFKKLLNDFF 581 Query: 600 LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPV 659 + + LI ++W II G+ +Y + ++LL++EL + S +G + Sbjct: 582 TDHEQKQPEAKLIIKKWTEIIHSGMQEKYTKKISITLLKNELCNSVSYISQSNYLFSGKI 641 Query: 660 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG-FDLMSQKPKRGDRSRRDDDRYLFLE 718 C + +IPFK++ L+G+ND + ++L+ P+ D + + L L+ Sbjct: 642 TFCNNFTLTNIPFKIIYLIGLNDNISSNTHESFDIYNLLKLHPRAYDPCDEINHKNLLLK 701 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVL--VQELIDYIGQSHYLPGDEALNCDESEARV 776 L+SA++ YIS+ + + +N ++ ++ + ++I YI Q Y+ N +++ + Sbjct: 702 TLLSAKKFFYISH--QIVSNNYKKLNNIPIAIDKIIKYITQYFYIKNKNKDNFNDNLKDI 759 Query: 777 KAHLTCLHTRMPFDPQNY-QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLE 835 K+H+ +T + +N+ + ++ A+ +H EF++ LP +T+ Sbjct: 760 KSHIYHNYTFYAHEKRNFLEKLNYPNFNTTIWKMATLINNSHKEFIKKLPSIKNQTINYN 819 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 TL FW +P++ FF +RL + T ++ + L +Y++N+ LL + + + Sbjct: 820 TLILFWKNPIQTFFHVRLNIQLNTTKNKHMHQNKHFINKLDQYKMNKTLLKFFLYKQNTN 879 Query: 896 RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLAC-NGVQITG 954 +LF+ ++ G +P G I WE + + L D+++ ++ + + + N + G Sbjct: 880 QLFQYYKNIGIIPNNNIGNIIWEYTKKLITPLYDQIMKIKKILNNSKFCINVKNKCMLHG 939 Query: 955 WLPQV-QPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAA 1013 L + GLLRW+ + LS + WLEHL+YC+ S L F L Sbjct: 940 QLKNINSSGGLLRWKATKLSFQDIISCWLEHLLYCSLYKKHNSILIGTNHQIITFYKLEN 999 Query: 1014 EQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQ 1073 + A +YL + I GY +GM P+ +L +SG W+ YD +N+ + + A FL Sbjct: 1000 KTAKYYLKKYISGYFDGMEQPI-LLTKSGINWINAIYDKKNNKFYTNTNKNLNAYKIFLN 1058 Query: 1074 AYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + GN + GE DD + Q++ LT + ++ I + ++++L P+ + Sbjct: 1059 TWNGNNWITGEKDDPYIQKMIVYLTKKNIQKIYKTTKKWLTPILK 1103 >UniRef50_Q8D2T9 RecC protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2T9_WIGBR Length = 1083 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 285/1126 (25%), Positives = 574/1126 (50%), Gaps = 51/1126 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M+ +Y SN++D+++ ++ I++ +++P + E+I+ S+ +++WL++ ++ I AN+ Sbjct: 1 MIYIYQSNQIDLIQKILSKILKNFPINNPMKKEIIITSSSNISEWLKLNITLNINILANV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +F SFIW + + +P ++ + +SW + Q++ + + + + + + Sbjct: 61 EFISLNSFIWKLVILTTKNVPFDNFAFRLMLSW----YIAQIIPKINKNIKIKNVYKNLN 116 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + ++F LS K ++L+++YL+++PDW+ + L ++Q +Q +W LV+ + Sbjct: 117 QFQIFYLSYKLSELYNKYLIFKPDWIDLLNFKKKSKKLEDSQYFQLIIWNLLVKKIKK-- 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 + + +++Y+ I+ +E + + R+FI GI +P +YL+ L+ L K I+IHL Sbjct: 175 EKDFCISSIYESCIQKIEKSNLIFEDIADRIFIFGIYYIPEIYLKILKTLSKKIDIHLFC 234 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPC YW DI + Y++ L+ EN + + + + LL Sbjct: 235 INPCCLYWFDIDNRFYISNLI-------------------ENKIKNKKNFFRKKIKISLL 275 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 + WG LG Y+ LL++L + E F DNLLH IQ+DIL + + Sbjct: 276 SFWGCLGAKYLKLLNNLNENIENKIFYKPKKDNLLHTIQNDILYNKYYNIIISKKFNKFE 335 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 N R L+ D+SIT H C + E+ L++ ++ + +++ + +DI+VM ++I+ YS Sbjct: 336 KKNLRVLNSKDNSITIHTCKNKYEEINSLYNFIVKITKDNKKICFKDILVMASNIEDYSS 395 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I ++F + + + Y ISD + + ++ A ++L LP +F E + LL+ ++ Sbjct: 396 YINSIFNN--INYKINYFISDIKIYERFNIISAIFNILKLPKFKFSIEQIFYLLEFSSIS 453 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME-S 539 +F + E+ ++ L+ V G++WGI + ++ +++W + + + Y + Sbjct: 454 NKFKMKEDEIKMLKYLVINLGVQWGISNKRFKKCNANFEEKYSWNNIIKKTVSEYYTRIN 513 Query: 540 AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 599 + ++ + D I L+ L + + +LN W L+Q L EW V + ++ FF Sbjct: 514 NKVYFKYIYSNDLDEKKINSLI-KLENFISKLNYWYDYLSQPHLLYEWNDVIKKIIKNFF 572 Query: 600 LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPV 659 PD + + L+++ W II +G+ +Y + + L + L +R +E ++ + Sbjct: 573 DPDKKENYVLDLLKKNWNDIIFQGINTKYKKTIYIETLENILYKRFKKENFFKKNKFNSI 632 Query: 660 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEA 719 + C L + IP K++CLLG+NDG YPRQ FD + + K D++ R +D Y FL Sbjct: 633 HFCNLKLSKIIPSKIICLLGINDGTYPRQDINYNFDSIYKNLKNDDKNIRQEDLYSFLII 692 Query: 720 LISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAH 779 L+S+++ LYIS+I I + ++ S+++ ELI+YI S Y+ ++ N E+ +K Sbjct: 693 LLSSKEHLYISFIKNYINEERSKYISIIINELIEYISVSFYIKNCKSYNFLENINNIKKI 752 Query: 780 LTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQR 839 L + F ++ + + + +++ F + + + Sbjct: 753 LFKKYNNFYF----FRKEKIEIFNKKYFLNNININSDKKIFSK---------ISINEFFL 799 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFR 899 F+++P++ + + +L++NF ++ D E + + Y+IN L L++ L + Sbjct: 800 FYSNPIKFWCKKKLKINFS-KEHLYKDNEFILKNKFNSYRINIILFEYLIKNK---YLNK 855 Query: 900 RFRAAGDLPY---GAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDLACNGVQITGW 955 + + Y G F EI E + ++ +L + + ++ ++ + I GW Sbjct: 856 KDLLKNTIKYFFDGVFEEIIIEKKYYQIIKLINNINKHLLMKKETKKVFFKLDRTIIFGW 915 Query: 956 LPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQ 1015 LP +Q GLLRW P LS+ G W+EHL+YC GG G+S +FL + W F + ++ Sbjct: 916 LPNLQNSGLLRWNPKNLSLQDGFLFWIEHLIYCIIGGKGDS-IFLGIESYWHFKNINYKK 974 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A H+ +L+ GY G+ P+ +L +SGGAW+ ++ + + ++ D+ T + AR+K + A+ Sbjct: 975 AKHFFKKLLVGYELGIENPIFLLNKSGGAWINHSFNKEKNKLILDEKTKKNARSKLISAW 1034 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 +GN + G+ D + ++ LT + I+ +S+++ + +FN+ Sbjct: 1035 QGNKFINGDSQDFYISKVIPFLTENNINKIINESKKYFIFPLKFNK 1080 >UniRef50_A1V2S0 Exodeoxyribonuclease V, gamma subunit n=90 Tax=cellular organisms RepID=A1V2S0_BURMS Length = 1354 Score = 786 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 325/1176 (27%), Positives = 507/1176 (43%), Gaps = 124/1176 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVE-RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML +++SNR + L + + P+ + ++V S + + L++ L+++ G+ AN Sbjct: 241 MLHLFYSNRHETLADALLDDLAFASDGAGPWAAQQVIVPSAALRRRLELDLAKRHGVCAN 300 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 + F A ++W VL +P S F + W+ LL R + Sbjct: 301 VRFSYLAQWLWAQIGEVL-TVPAHSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAA 359 Query: 120 DKR-KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG-----------EAQAWQAP 167 +L+ + A +FD YL YRP+WLAQW+ G + L + +AWQA Sbjct: 360 ADAPMRHELAHRIATVFDHYLTYRPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAA 419 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW+AL+ G P HR R + + P V + + +PP+++ L Sbjct: 420 LWRALLAELSDSGMPPAHRFLREARAFD-PDVIARARAKWPDAVSVFALPTMPPLHIALL 478 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 + L + I++ + NPCR +W DI A L R Sbjct: 479 RELSRWIDVRIYALNPCREFWFDIVTAARAESLDAADRL--------------------- 517 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDL-ESSQELDA--FVDVTPDNLLHNIQSDILE 344 Q+VG+PLLA WG+ + +++L +L ES+ DA + D L +Q+ IL+ Sbjct: 518 ---DYQEVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYADNPAPTWLARVQNAILD 574 Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 L+ A G P + + HVCHS R++EVLHDRLLA + DP+L Sbjct: 575 LQPEAALGEP--------------PAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLA 620 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISLLSLPD 462 P D++V + D+ + P I AVFG+ +PY I+ Q++PV + L+LP+ Sbjct: 621 PSDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPE 680 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGI--DDDNVRELELPATG 520 + +++ L +AAR+ I L ++ W+ SG R G+ D +PA Sbjct: 681 RDVGAPELVEWLRADAVAARYGIDATALETVQAWLAASGARRGLAPDAAEPPNPAVPA-P 739 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +HT+ LTR+ LGYAM + LP + G AEL+G LA L+ + R +A+ Sbjct: 740 RHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTDDLDGFARRIAR 799 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 + + W V D L FF A++ + A++A G A+P +++R Sbjct: 800 DLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAGAALPAAVVRAG 859 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 LA LD G V +L +R +P+++VCL+GM+DGV P FDLM+ Sbjct: 860 LAAALDD-PARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLARADEFDLMAVF 918 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 K GDR RRDD+R LFL+ L++A+++L I+Y GRSI+DN+ P+ LV EL+D++ + Sbjct: 919 AKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDELLDHLAAASA 978 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAAS-----QAG 814 P D + + H PF + + P G +Y A Sbjct: 979 GPDAPPDAVDAA----RRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLLAEGARA 1034 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 +A F PLP + V +RFW HP R+ + RL + +E+ DTEPF L+ Sbjct: 1035 QARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVDTEPFELDY 1094 Query: 875 LSRYQINQQLLNALVEQDDAERLFRRFR---AAGDLPYGAFGEIFWETQCQEMQQLADRV 931 + +++L L+E DA R A+ ++P GA G + + + QLA V Sbjct: 1095 AGSDALAERVLPLLIETADAAAFEHALRVADASPEVPGGATGAVRRDHALDALAQLAGNV 1154 Query: 932 IACR-------------QPGQSMEIDLACNG--------------VQITGWLPQVQPDGL 964 P S D G +++ G L ++ G Sbjct: 1155 RRALADGATRVPFAFDVAPAWSAASDARWFGEHDAALAAAATREPLRLHGALARLTAAGQ 1214 Query: 965 LRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG-EWRFPPLAAEQALHYLSQL 1023 + +R + + WL HLVYCA G R G + F P+AA L L+ L Sbjct: 1215 VIYRYARPGARDYLAAWLAHLVYCAIDPGGPRRTLWFGSGDTFEFAPVAAP--LEQLAPL 1272 Query: 1024 IEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRG 1083 +R G PL P S A + + KA ++ N V G Sbjct: 1273 AALFRAGRRMPLAFFPRSAWALV--------------SESESKAAGVWI-----NDRVAG 1313 Query: 1084 EGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 E DD WR P E + PL Sbjct: 1314 EADDASLALAWRGANPSLDEPFGALAHLVFDPLVEH 1349 >UniRef50_C0ZQ87 Exodeoxyribonuclease V gamma chain n=6 Tax=Corynebacterineae RepID=C0ZQ87_RHOE4 Length = 1093 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 285/1162 (24%), Positives = 471/1162 (40%), Gaps = 120/1162 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG----- 55 ML++Y + R D L + + ++ R L DPF E + V + G+ +WL LS + G Sbjct: 1 MLKLYRAERSDTLVSALATLL-RTPLSDPFARETVAVPAKGVERWLNQRLSSQLGTSGPS 59 Query: 56 ----IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL 111 I+ANI FP PA + + V + ++ + W ++ ++ + L +L Sbjct: 60 AVDGISANIAFPSPARLVAESVAAVSGITADDDPWSPTRLVWTVLDVIDESLGEPWCGVL 119 Query: 112 RHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG----EAQAWQAP 167 +L + R+ F ++ +LF Y RP L W G L +G G E WQA Sbjct: 120 AKHLEGHREGRR-FASATHVTELFRSYAAQRPQMLIDWAAGRLTDGHGLALSEDFEWQAR 178 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW + + G A + L LP R+ + G + LP L Sbjct: 179 LWCIVADKIDVPG-----PAERLGQVSRAL-VEDPALVDLPERLSVFGPTRLPVDQRMIL 232 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 AL + ++H+ +P W K+ +R R R SE+ L Sbjct: 233 SALSANRDVHIWLPHPSPALW---------TKMSSR-----IPPRSESTIRRSEDGSALI 278 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELEN 347 ++ NPLL+S + R+ L E + + P +LL +++D++ Sbjct: 279 SA-------NPLLSSLARDVRELQISLGAAE-FESVHLPEPAGPKSLLATVKADVIADRA 330 Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 +VA D ++ H CH P R+VEVL + LL + E+DPTL PRD Sbjct: 331 PSVAAEP----------------DGTVQVHACHGPARQVEVLRECLLRLFEDDPTLQPRD 374 Query: 408 IIVMVADIDSYSPFIQAVFGSA---PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 ++VM D+++Y+P ++A FG L ++DR RQ++PVL SLL L D R Sbjct: 375 VLVMCPDVETYAPLVRAAFGQGVHGHPGHLLRVRLADRGLRQTNPVLAVLGSLLELADGR 434 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 + +VL L + RF E+ L LR+W E+G RWGI L A Q+T+ Sbjct: 435 ATASEVLDLAAADPVRTRFSWGEDELERLREWTTEAGARWGIGSRQRATFGLDAFPQNTF 494 Query: 525 RFGLTRMLLGYAMESAQGEWQS-VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 + R+LLG + + ++ W LP D+ G +L G A + +L + R LA Sbjct: 495 NTAMDRILLGVSADESENAWLDLALPLDDVDGTDIDLTGRFAEFVDRLAVSLRDLAGPHS 554 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQ 643 EWL V L+ ++ A + G + L+ +R L++ Sbjct: 555 PAEWLRVLMRALDLLTDTAPADSWQSAGAHRELVAAVEFGGET----MLRLADVRAMLSR 610 Query: 644 RLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR 703 L F G + +CT++PMRS+P +VV L+G++D V+PR G D++S+ P Sbjct: 611 SLAGRPTRANFRTGELTVCTMVPMRSVPHRVVVLIGLDDEVFPRTGGVDGDDILSRHPVV 670 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 763 G+R R +DR L L+A++SA + L + Y G R P++ + L+D + + Sbjct: 671 GERDLRSEDRQLLLDAVMSAGEHLILLYTGADPVTGVVRPPAIPLSGLLDVLSATVGPEA 730 Query: 764 DEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQP 823 + H FD +N+ P + S+ L A A E Sbjct: 731 INGV-------------LTRHPLQSFDNRNFSPDQPFSFDTAALAGARAAAGTPIELPTV 777 Query: 824 LPFTL----PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQ 879 L L P+ V L L F HP R F + RL V D +I D+ L+ LS + Sbjct: 778 LSAELLEVHPKEVNLADLVNFLVHPARGFLRQRLGVRVPELDDDIADSLATELDPLSTWA 837 Query: 880 INQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-G 938 + ++L + + + G LP G + QLA + + Sbjct: 838 LGDRMLLSRLAGRSSADFRAAEWRRGTLPPYNLGASVLGNVEWVVDQLAGLALPHLEGDS 897 Query: 939 QSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR 997 +++++D+ +G ++TG + V + ++R S L+ M W+ L A G G Sbjct: 898 EAVDVDIDLGDGHRLTGTVTGVHGNSVVRASYSSLAPKHRMTAWINLLALKAHGRPGALD 957 Query: 998 LFLRKDGEWRFPPL-----AAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDA 1052 G + A A L QL++ G+ PL + + + + + Sbjct: 958 AVSIGRGRGKIAAARSVLDAPGNAAEILQQLVDLRERGLQRPLPMWAATSAEYARRRFGG 1017 Query: 1053 QNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ--------LTPETMEA 1104 ++ A + G GE D ++ + P + + Sbjct: 1018 ---------ESVDDATNGADTQWTGQY---GEMIDPSNAYVFGEARTLAELAADPPSDDE 1065 Query: 1105 IV---------EQSQRFLLPLF 1117 V ++R PL Sbjct: 1066 FVWAEEPTRFGVLARRLWDPLL 1087 >UniRef50_B5JHV1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHV1_9BACT Length = 1133 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 277/1132 (24%), Positives = 472/1132 (41%), Gaps = 69/1132 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L ++ SNR++ L A + I + L P E ++ + G+A+WLQ +++ G++ D Sbjct: 35 LYLHTSNRVENLAARLVEICQAVPLSRPLSQETVMTLNPGIARWLQFEIAKATGVSFGWD 94 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 FPLP + P F + WKL+ +L L ++ F +R Y ++ Sbjct: 95 FPLPGKLFARVLRGFEPGFDTNGVFPEDLARWKLVEILSTLEDQPRFAQVRAYCQT-AEG 153 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 +++ L+D+YLVYRPD + QWE WQA +W+ LV + + Sbjct: 154 SHRLAFANRLTRLYDEYLVYRPDIVTQWEDDPGSSNFD----WQAEIWRRLVRLVYPKNR 209 Query: 182 PRWHRANLYQRFIE-TLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 H A ++Q + P P R+ + G+S+L P+YL L L ++ +H+ Sbjct: 210 KPRHIARVWQDLSRGQILELGLQPQAWPERLLVFGVSSLAPLYLDLLDQLARYRPVHIFL 269 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 P YW D+K + K+ + + P D + GN LL Sbjct: 270 LQPSDMYWADLKTTKQIQKIAMKAAGETGNRITSP-------------EDWLYETGNALL 316 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL-LHNIQSDILELENRAVAGVNIEEFS 359 S GK + ++ LL D Q+ AF ++ L +QSD+ +E+R +A Sbjct: 317 PSLGKQSQMFLDLLIDKNPQQDDTAFEPPFDESSQLACLQSDLFTIEDRDLA-------- 368 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 D ++ H C +REVE + D ++ L+E+P L +I+VM DI +Y Sbjct: 369 --KGGDAFSAYDGTLQVHSCSGRRREVETVWDLIVRRLDENPELKASEILVMAPDIQAYR 426 Query: 420 PFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 I+AVF S +P++++D A V ++L R S +VL LL+ P+ Sbjct: 427 SHIEAVFRSKRGTHLEIPFSVADNSAGNRPGVFSGIFAILQSASGRASSAEVLELLECPL 486 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 L + +++ L + W+ E GI WG D D+ + E AT ++TW +R+ G A Sbjct: 487 LREVYSFSDQDLERIEFWIRELGITWGWDSDHRDQRESFATDRNTWSELRSRLSAGIAFS 546 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 S + L Y E G ++E G L L L R Q L W ML Sbjct: 547 SEVETPKGFLAYSEIEGELSETAGRLLECLDLLGSLRHNFRQTHSLAVWQDRLLAMLATL 606 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 Q +I E L A S L+++L+ +L+G Sbjct: 607 ----KSQRDDWQRDYVQASDMIHETLPALDDVFATGSEAYRALSEKLESSASGGGYLSGG 662 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 V C+L PMR+IP VC++GMN +PR+ L FDLM+++ + GDR+ RD+DR FLE Sbjct: 663 VTFCSLKPMRAIPADTVCIMGMNRLDFPRRSNRLSFDLMAKESRIGDRNTRDEDRQFFLE 722 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 L+S + +I+Y G S ++ PS +++EL+ Y+ + L Sbjct: 723 TLLSVRSHFFITYQGTSSNSDTVNEPSAVLEELLSYLETAMPLED-------------FK 769 Query: 779 HLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE-------T 831 + R FDP +Q +Y + ++ + + + L + Sbjct: 770 RILTQQKRQSFDPVYFQNDRNGTYDPDRAALRNRFNGLQTSEAKAVSTELEQTQGEEISE 829 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ 891 + L+ L RF++ P +AF +V +E+ + +++ + GL R+QI + + Sbjct: 830 IELDALIRFFSDPAKAFASNVSKVKLVSEEDALEESDALLSGGLDRFQIRNEFAERIARG 889 Query: 892 DDAERL-FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGV 950 + E L + LP G + ++ + QLA+ + + +DL G+ Sbjct: 890 EPLEELSIKALSQRKLLPAGLLETPTFASEYERAAQLAESIGNVETSTHYVSVDL--EGI 947 Query: 951 QITGWLPQVQPDG-LLRWRPSLLSVAQGMQLWLEHLVYCASGGN--GESRLFLRKDGEWR 1007 + G DG + L + + W+ HL + + GE+ LF + Sbjct: 948 TLLGESTTRLEDGRQVLIHAGELKPKRVVDAWIRHLFAASLDPHFSGETYLFSLHEKGSP 1007 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLP----ESGGAWLKTCYDAQNDAMLDDDST 1063 E L+ L + + G +PL P + AW +C D + + Sbjct: 1008 IRLGQVENPRKLLADLAQAFASGQRSPLPFFPVLSYNAFRAW-NSCSSESEDERIGE--A 1064 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLP 1115 L++AR + + R + + + E EA V+ + F P Sbjct: 1065 LERARKDLRASQVDSDYPRSYTWSAYDRICFGDQF-EPDEAFVKLAVAFWSP 1115 >UniRef50_B5EPU5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU5_ACIF5 Length = 1130 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 341/1092 (31%), Positives = 512/1092 (46%), Gaps = 95/1092 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 V H +RL+ L + + L P E E+ LVQS G+A+WLQ TL+ GI A + Sbjct: 10 FIVLHGDRLEWLSDAVLEWLRAHPL-RPLEEEIFLVQSNGIAEWLQWTLAAHEGICAAVR 68 Query: 62 FPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT--- 116 LP F+W+ + RVL + S +K ++W+LM LLP+LL DF LRH++ Sbjct: 69 VALPGRFLWESYARVLGTGIVSARSPLDKAPLTWRLMRLLPELLAHADFAPLRHFIGQSQ 128 Query: 117 -DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQAWQAP 167 D + +Q++++ ADLFDQY VYR DWLA W T + L Q WQ Sbjct: 129 RPDGALERRWQMAAQIADLFDQYQVYRGDWLADWTTDQSLLRRGDGERVTLPADQRWQPR 188 Query: 168 LWKALVEYTHQLGQPRWH-RANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQA 226 LW+AL + H G + RA ++++F+ L + LP RV I G + LP L A Sbjct: 189 LWQALRQDLHSRGLDQAPGRAQVHEQFLAALNAGRPPVTPLPRRVVIFGAATLPEQSLTA 248 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L ALG+ +++ L NPCRY+W DI R + + Sbjct: 249 LAALGRQMQVILAVPNPCRYHWADIVSG-----------RELLRRERRRQPPRNGHDLSA 297 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---------LDAFVDVTPDNLLHN 337 ++ GNPLLA+WG+ GRD++ LL + + +D F + D LL Sbjct: 298 TATEDLHQFGNPLLAAWGRQGRDFLDLLDQFDETAALQRQMDIPRIDLFSEDQGDTLLRQ 357 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 +Q I +LE R + LD D S+ FH+ HS REV++LHD+LL Sbjct: 358 LQVQIRDLEG-----------IRPETCTALDDNDHSVVFHIAHSALREVQILHDQLLDRF 406 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFI 455 L PRD+IVMV +I ++P I+A F + RY+PY I D +AR P+L A Sbjct: 407 ATG-KLQPRDVIVMVPEIGGFAPLIRATFDQYDREDRRYIPYHIVDLQARDEQPLLLALD 465 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE 515 LL LP+ R ++ LL+ P L RF + E L ++ W+ +G RWG+ ++ L Sbjct: 466 WLLRLPEQRCRQSEIRDLLNCPALRRRFGLELEDLPIVQHWLAGAGWRWGLSAEHRAALG 525 Query: 516 LPATG-QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 +P G Q++ F L R+ LGYA + + Y E GL A L+G L LL +L W Sbjct: 526 MPHCGSQNSGDFALQRLCLGYA-SGDDSHFSGIEAYGEVGGLDAALLGPLGQLLEKLAHW 584 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAET-EAAMTLIEQQWQAIIAEGLGAQYGDAVP 633 + L + E W R++L FF + EA + +E+ + + A + +A+P Sbjct: 585 QHVLGESLVPEHWGEAARNLLTDFFSASDDDDEALLQNLEEALRQWQTDCAAADFNEALP 644 Query: 634 LSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 L++ R + LD + + FL G V CTL+PMR++P+ +VCLLGMN+G YPR+ Sbjct: 645 LAVFRGAWLEMLDAPDLGRSFLGGGVTFCTLLPMRAVPYPLVCLLGMNEGDYPRRSPRPD 704 Query: 694 FDLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 FDLM+ + GDRSRRDDDRYL LEAL++A+++LY+S+ GR ++N ER PS+LV +L Sbjct: 705 FDLMALPGMARPGDRSRRDDDRYLMLEALLAARRELYVSWAGRDQRNNHERAPSLLVAQL 764 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ-PGERQSYAREWLPAA 810 + I T H PF P +++AREW P+ Sbjct: 765 REAIRDGW--------------PPALEKRTFEHPLQPFSPDYLAGKPGLRTWAREWYPSP 810 Query: 811 SQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPF 870 A + + P P + + L F+ P RAF++ RL+ +F ED D EPF Sbjct: 811 HSAPENAA---LPDPAEIT-PRSIRELLEFFRLPARAFYRQRLRTDFNEEDPAEEDDEPF 866 Query: 871 ILEGLSRYQINQQLLNALVEQDD--AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLA 928 L+ L Y + + LL A + R R +G P ++ + Sbjct: 867 TLDSLETYHLLEDLLRAAEKNGPDRIAERVRAQRRSGRYPLAGMASRTATALLDDVTPVL 926 Query: 929 DRVIACRQPG----QSMEIDLACNGVQITGWLPQVQPDG-----LLRWRPSLLSVAQ--- 976 Q + A + + WLP + + ++ R S L Sbjct: 927 TVWREIGTEWTAAPQRRVVHRARGRILLEDWLPALYQNNAGDLAFVQLRASRLLNKDSKK 986 Query: 977 -----GMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGM 1031 LWL+ L+ A G + + +D R P + L L++ ++EG+ Sbjct: 987 PEGDKLAALWLQQLLANAVGLRC-GGIVVGRDVLVRAAPPPPGA-IAALDDLLDLWQEGL 1044 Query: 1032 SAPLLVLPESGG 1043 PL V ++ Sbjct: 1045 CEPLPVTLKTAL 1056 >UniRef50_UPI0001C32181 exodeoxyribonuclease V, gamma subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32181 Length = 1143 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 311/1162 (26%), Positives = 480/1162 (41%), Gaps = 128/1162 (11%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG----- 55 ML V+H++ D L A + ++ RL DPF E++ V + G+ +WL LS + G Sbjct: 1 MLHVHHADGADRLVAALAEVLTV-RLADPFAAEVVAVPTRGVERWLAQRLSGRLGTSPGA 59 Query: 56 ---IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLR 112 I AN+ FP P + + + + W L+ L+ + L Sbjct: 60 GDGICANVAFPTPRRVVEEAIAAASGLDAATDPWRPERALWPLLELVDAASDEAWLGRLT 119 Query: 113 HYLTDDS-DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQAWQAP 167 +L + D+ + A LF +Y ++RP L W G +G L WQA Sbjct: 120 AHLDRAAGDRSRRLSAVRHVATLFARYALHRPAMLRAWAAGSDEDGAGGALDAEHRWQAE 179 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW+ L E G A L L LP R+ + G+++LP LQ L Sbjct: 180 LWRRLRERVGVPG-----PAELLDLGRARL-VEDPGLSDLPERISLFGLTSLPARDLQLL 233 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 +AL + ++HL P W I D A +LTR + S Sbjct: 234 RALAERRDVHLFLLMPSPAAWRGIADAAGRGPILTRGQALSA------------------ 275 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDL--ESSQELDAFVDVTPDNLLHNIQSDILEL 345 +PLLASWG+ GR+ LL L E+ PD LL +Q+DI Sbjct: 276 -----ALPAHPLLASWGRDGRELQLLLEPLPTEAVHADAIGAGDEPDTLLARVQADIR-- 328 Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 + R D L D+S+ HVCH R+VEVL D +L L +DP+L P Sbjct: 329 ---------ADRTPREDEPVQLGDGDASVQVHVCHGRARQVEVLRDAILHALADDPSLEP 379 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPAD-----------------RYLPYAISDRRARQSH 448 RD+IVM DI++++P ++A FG+ AD L ++DR RQ++ Sbjct: 380 RDVIVMCPDIETFAPLVEATFGAGEADVGEALADDAVDLSGAHPAELRVRLADRSLRQTN 439 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 PVL LL L +R + ++L L+D + RF + E+ L + WV SGIRWG+D Sbjct: 440 PVLGVVTKLLELATARVTASELLDLVDREPVRRRFRLEEDELARVEDWVAASGIRWGLDA 499 Query: 509 DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASL 567 + L Q TW GL R+L G AM G VLP D+ +L G A L Sbjct: 500 AHRAPFRLQHVPQGTWAAGLDRLLTGVAMAERPGHTLAGVLPLDDVDSSAIDLAGRFAEL 559 Query: 568 LMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ 627 L +L LA +P+ W + + ++Q ++ E Sbjct: 560 LDRLAAALDELAAPKPISAWATAIAEAADTMTATTPRDAWQRAELQQLLADVVEEATNDG 619 Query: 628 YGDAVPLSL--LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 AV L + + L RL F G + +CTL PMRS+P +V+CLLG++D V+ Sbjct: 620 VASAVSLDVADVAALLGGRLAGRPTRTNFRTGHLTVCTLQPMRSVPHRVICLLGLDDDVF 679 Query: 686 PRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 PR+ G D++ +P GDR R +DR + L+AL++A +L ++Y GRS + N+ER P+ Sbjct: 680 PRRSPRDGDDVLLDEPWIGDRDGRSEDRQILLDALMAAGDRLIVTYSGRSERTNAERAPA 739 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ----- 800 V + EL+D I ++ C R + + H PFD N+ P Sbjct: 740 VPIGELLDVIDRT---------ACAADGGRARDAVLVRHPLQPFDAANFAPSTLVPQRAW 790 Query: 801 SYAREWLPAASQAGKAHSEFVQPLPFTL----PETVPLETLQRFWAHPVRAFFQMRLQVN 856 S+ L A G LP L + + L+ L F HPVRAF + RL V Sbjct: 791 SFDGVTLEGARALGGERGSRPPFLPRPLQPQDADVIELDQLLAFVGHPVRAFLRQRLGVG 850 Query: 857 FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIF 916 E D+ P L+ L+R+ + +LL A D RA G +P GA G+ Sbjct: 851 VDVGAGERSDSLPIELDPLARWGLGARLLAARRAGVDVGVAVADERARGSVPPGALGDQV 910 Query: 917 WETQCQEMQQL---ADRVIACRQPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLL 972 E++ + A + P +++++ +A +G + G + V L S + Sbjct: 911 LRGVVAEVEAILGAAAETVGAGGPLRTLDVRIALEDGRTLAGTIGGVGQYVLPVVTYSRV 970 Query: 973 SVAQGMQLWLEHLVYCASGGN---------------GESRLFLRKDGEWRFPPLAAEQAL 1017 + M+ W+ L A+ + R P + +A Sbjct: 971 DPRRRMESWVRLLALTAAFPERSLVATTVGRARRDVDRATTIARIAQPGGEPDVRRTRAH 1030 Query: 1018 HYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEG 1077 L+++++ Y GM PL + ++ + A + A+E Sbjct: 1031 AELARIVDLYDRGMREPLPLFRQTS---------------AAYAAGGATAVARAHTAWET 1075 Query: 1078 NMMVRGEGDDIWYQRLWRQLTP 1099 + E D +Q ++ P Sbjct: 1076 DFQPLREDLDPEHQLVFGGTLP 1097 >UniRef50_C7PDT3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT3_CHIPD Length = 1063 Score = 767 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 299/1140 (26%), Positives = 493/1140 (43%), Gaps = 109/1140 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + SN L+ L + ++ FE +I+ Q+ GM WL++ L++ GIAAN Sbjct: 3 LYLRVSNSLENLSMGLAQTLKAS-NSQVFEQHLIVTQTEGMNNWLKLQLAEYLGIAANCR 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHY---LTDD 118 F P I ++ L + + ++++W L LL + + RE + + Y D Sbjct: 62 FLKPNDLIHQIY--FLMDGQYSEMLSGRNLTWLLYKLLGEDIFRETYPAVATYYHTTEPD 119 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQ 178 SD +++ L+ + ADLFDQY +YRP+ + +W E WQ LW E Sbjct: 120 SDLKRM-ALAERTADLFDQYQIYRPEMINEWNA--PPEDPFAKIDWQQYLW---TEAKKV 173 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSR---VFICGISALPPVYLQALQALGKHIE 235 G + + Q ++ L++ L R V + G+S + ++Q L L I+ Sbjct: 174 SGHALPDKTIIGQHILDMLKNPDH-QETLAHRMNTVHLFGLSIITAYHVQILHELSSFID 232 Query: 236 IHLLFTNPCRY-YWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 I+ NP YW D K A+ + R D Sbjct: 233 IYFHIINPSPELYWFDDKSEKQQARWRLKGRPIHESDT---------------------- 270 Query: 295 VGNPLLASWGKLGRDYIYLLSDLE---SSQELDAFVDVTPDNLLHNIQSDILELENRAVA 351 GNPLL WG++ +D L + ++ E + V+ PD LL+ +Q DI N Sbjct: 271 AGNPLLMGWGRVVQDTFGLFFKYDAFINAYESEGLVEPQPDTLLNKVQHDIFLNANEQRH 330 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED-PTLTPRDIIV 410 + P D D SIT + C++ REVEVL++ L+ ++++ TL+PRDI+V Sbjct: 331 PI-----------FPEDVEDGSITINNCYTVAREVEVLYNYLVHLVDKKRETLSPRDIVV 379 Query: 411 MVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 MV DID Y+P+I+A+F +AP Y I+D S + A ++L L + F +E+V Sbjct: 380 MVRDIDVYAPYIKAIFNNAPYKFR--YTIADESYADSDNLFNALHAILRLNEDNFKAEEV 437 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 L LLD + RF I + +R V+E+ IR+GI E L +W++G+ R Sbjct: 438 LQLLDSSYVRKRFGINN--VPLIRHVVDEANIRFGIHGAKEDETYLV-----SWKYGIKR 490 Query: 531 MLLGYAMESAQGE---WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 ++ G M Q + P D G + V L +ER + W Sbjct: 491 IMYGICMSGDQEYGKGEEGFFPLDILEGSDSLEVIRFCHFAEVLISAIEDRKKERSISGW 550 Query: 588 LPVCRDML-NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD 646 + +L N + P+ E + + QQ L D V + Q L Sbjct: 551 VEYIEGILHNMVYEPEEEIDEDYNTLMQQLSDY--NLLNEYMSDTVAFDVFSHSFLQTLT 608 Query: 647 QERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR 706 + F+ G + C+L+PMRSIPF+VV +LG++ +PR+ P+GF+LM + +RGDR Sbjct: 609 GTTRTGLFVNGGITFCSLIPMRSIPFRVVAMLGLDYDKFPRREQPIGFNLMEKNKQRGDR 668 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEA 766 + +D+D++LFLE ++SA+Q LYISY+G+S +DNS PS LV EL+DYI Sbjct: 669 NVKDNDKHLFLETVLSARQYLYISYVGQSAKDNSRMPPSALVDELLDYIESGC------- 721 Query: 767 LNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-QSYAREWLPAASQAGKAHSEFVQPLP 825 E V+ L F + Q ER SY + + + + + Sbjct: 722 ----EDAEGVRNRLVTRQPLQGFSRKYGQGDERLYSY-----LNTAVPERIITRADKAME 772 Query: 826 FTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL 885 E + L+ L RF+ +P +A++ L + + E + +TE F L+ L ++ + +LL Sbjct: 773 QPSIEEIDLDELVRFFKNPFKAYYNKVLGIYYNDEQVLLNETEIFHLDSLQKWSLKNELL 832 Query: 886 NALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSMEI 943 ++ + + R G LP + + E+Q + ++ AC QS+++ Sbjct: 833 Q--MDTNAIANMKIRLVKTGRLPLKNMAYVALQQIEAEVQPVREKFRACINGAEEQSVQV 890 Query: 944 DLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLR-- 1001 +L G + G + V L++ S M+ ++ +L A+G Sbjct: 891 NLDIEGTLLKGTINGVFDGKLVQVSWSKREDKYLMEAYIRYLAGRAAGVLDGMCFISGAS 950 Query: 1002 KDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDD 1061 K + PLA ++AL L+ L++ +REG P+ D D Sbjct: 951 KREAFEAIPLAQQEALRRLTALVKIFREGFEKITPFYPD--------FDIKPADVAGLDF 1002 Query: 1062 STLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR---QLTPETMEAIVEQSQRFLLPLFR 1118 S K K L G+ + D + R + ++ L+PL Sbjct: 1003 SKFSKKVDKALDK--GDDITI----DPYISREYENGFFKDETMLDTYKVICSHLLVPLAE 1056 >UniRef50_P96921 Exodeoxyribonuclease V gamma chain n=23 Tax=Mycobacterium RepID=EX5C_MYCTU Length = 1097 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 297/1172 (25%), Positives = 491/1172 (41%), Gaps = 139/1172 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLS--------QK 53 L ++ + R D+ A + + DPF E++LV + G+ +WL LS + Sbjct: 3 LHLHRAERTDL-LADGLGALLADPQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRA 61 Query: 54 FGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 G+ A I F P S I ++ + + ++ ++++W L+ ++ L+ L Sbjct: 62 DGVCAGIAFRNPQSLIAEITGTL-----DDDPWSPEALAWPLLAVIDASLDEPWCRTLAS 116 Query: 114 YL--------TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQ 165 +L + + + + ++ + A LF Y RP LA W G L E L AWQ Sbjct: 117 HLGHFATTDAEAELRRGRRYSVARRLAGLFASYARQRPGLLAAWLDGDLGE-LPGDLAWQ 175 Query: 166 APLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 PLW+ALV H + I L P LP+R+ + G + L +Q Sbjct: 176 PPLWRALVTTVGADPPHVRH-----DKTIARLRDG---PADLPARLSLFGHTRLACTDVQ 227 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 L AL H ++HL +P W R L F+ ++ Sbjct: 228 LLDALAVHHDLHLWLPHPSDELW-----------------------RALAGFQGADGLLP 264 Query: 286 LFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVT--PDNLLHNIQSDIL 343 + +PLL + G RD L L +++ D F+ T PD LL +Q+DI Sbjct: 265 RRQDTSRRAAQHPLLETLG---RDVRELQRALPAARATDEFLGATTKPDTLLGWLQADIA 321 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 R R L D S+ H CH P R+++VL + LL +LE+DPTL Sbjct: 322 GNAPR-------------PAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTL 368 Query: 404 TPRDIIVMVADIDSYSPFIQAVFG------SAPADRYLPYAISDRRARQSHPVLEAFISL 457 PRDI+VM DID+Y+P I A FG L ++DR Q++P+L L Sbjct: 369 QPRDIVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAEL 428 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L++ ++R + +L L + A+F ++ L + WV ES IRWG D + R L Sbjct: 429 LTIAETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLD 488 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEW-QSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 +TWRFGL R+L G AM W + LP D+ EL G LA + +L+ Sbjct: 489 TVVHNTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVG 548 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 GL+ RPL WL ++ + + A +++++ ++A G++ + L Sbjct: 549 GLSGARPLVAWLDALATGIDLLTACNDGWQRAQ--VQREFADVLARA-GSRAAPLLRLPD 605 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 +R L +L F G + +CT++PMRS+P +VVCL+G++DGV+PR P G D+ Sbjct: 606 VRALLDAQLAGRPTRANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPDGDDV 665 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 ++++P G+R R +DR L L+A+ +A Q L I+Y G + R P+V + EL+D + Sbjct: 666 LAREPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALD 725 Query: 757 QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-----QSYAREWLPAAS 811 Q+ P V+ + H PFD +N PG ++ L AA Sbjct: 726 QTTSAP-------------VRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQ 772 Query: 812 QAGK----AHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 A + LP V L L F+ PV+ FF+ L + + D+ Sbjct: 773 AAAGKRCPPTAFISGRLPAPPAADVTLADLLDFFKDPVKGFFRA-LDYTLPWDVDTVEDS 831 Query: 868 EPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL 927 P ++ L+ + + +++L ++ + G LP G G + + L Sbjct: 832 IPVQVDALAEWTVGERMLRDMLRGLHPDDAAHSEWRRGTLPPGRLGVRRAKEIRNRARDL 891 Query: 928 ADRVIACRQP-GQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 A +A R GQ+ ++D+ +G +++G + V + S L+ + W+ + Sbjct: 892 AAAALAHRDGHGQAHDVDVDLGDGRRLSGTVTPVFGGRTVSVTYSKLAPKHVLPAWIGLV 951 Query: 986 VYCASGGNGE-SRLFLRKDGEWRFPP----LAAEQALHYLSQLIEGYREGMSAPLLVLPE 1040 A E S L + + + + L +L+ Y G PL + + Sbjct: 952 TLAAQEPGREWSALCIGRSKTRNHIARRLFVPPPDPVAVLRELVLLYDAGRREPLPLPLK 1011 Query: 1041 SGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPE 1100 + AW + D Q+ + ++ N G+ D + R W P Sbjct: 1012 TSCAWAQARRDGQDP------------YPPARECWQTNRFRPGDDDAPAHVRAWGPRAPF 1059 Query: 1101 TM---------------EAIVEQSQRFLLPLF 1117 + + + R LPL Sbjct: 1060 EVLLGKPRAGEEVAGEETRLGALAARLWLPLL 1091 >UniRef50_UPI0000E0F593 exodeoxyribonuclease V, gamma subunit n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F593 Length = 1147 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 268/924 (29%), Positives = 449/924 (48%), Gaps = 78/924 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVE---RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIA 57 M V SN+ ++L ++ ++ ++ + FEP I+V+S GM +L M +++K G++ Sbjct: 1 MFHVVPSNKQEILTQVLISFIQDDYQQGIRGVFEPTTIVVESQGMQHYLNMEIAKKTGLS 60 Query: 58 ANIDFPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLL--PQLLEREDFTLLRHY 114 NIDFPL + I+ + +L + +P++S F ++ + W + T+L P + Y Sbjct: 61 MNIDFPLVSREIYSICRSILGDKVPQDSPFKREYLVWNIFTILQDPGFISDPRAAYANAY 120 Query: 115 LTDDSDKR-KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALV 173 + + + F+L+ + AD+++QYL+YR DWL WE G+L + WQ +W+ LV Sbjct: 121 WQEQPEPLLQCFRLAKQLADVYEQYLIYREDWLTAWEQGNLKGLNDTLEPWQQLIWEQLV 180 Query: 174 EYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH 233 H A L I L + LP + I ++ L P ++ A+ ++ Sbjct: 181 A------IHPDHPAALRAAAISQLAT---HQAKLPKSITIFAVNTLSPTQIEFFSAVAQY 231 Query: 234 IEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQ 293 I+++L F NPC YWGD+ L + E + + + Sbjct: 232 IDVYLFFLNPCSQYWGDVVSDKVLLR---------------------ERLSKGIDELKAE 270 Query: 294 DVGNPLLASWGKLGRDYIYLLSDLESSQELD--AFVDVTPD---NLLHNIQSDILELENR 348 D+ +P+LA+ G+ GR L D+ D F+ T D +LL +Q+DI Sbjct: 271 DISHPILANLGQQGRGLFNQLQDINYPDMTDSQLFIAPTADDAPSLLKQVQADI------ 324 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 A A V D +D+SI H S REV+ LHD LL +L DP L P DI Sbjct: 325 ASAHVTPVTLHPED-------IDASIQIHSGFSAIREVQTLHDELLRILTADPDLQPHDI 377 Query: 409 IVMVADIDSYSPFIQAVF-----GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 +VM ++ Y+PF+ ++F + L +I+DR S P + F+ +LSLPDS Sbjct: 378 LVMCPSVEEYAPFVNSIFRPSYKPAQTDSPQLVCSIADRAPLNSEPTVMMFLDMLSLPDS 437 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA--TGQ 521 RF ++ L +P + ++TE+ L W++ S I+WG++ + T Sbjct: 438 RFSVTKIIDYLRIPSVQKNLNLTEDELTLCINWLSMSQIKWGLNQAHKASWLDNEAVTEH 497 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 +TW +GL+R+ LG Q D GL + ++G L L+ +L+ +R L + Sbjct: 498 YTWEWGLSRLALGCLHSEMQEHHDEFAYVDAVEGLNSRILGKLLVLVNRLSTFRAQLNGD 557 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 + ++EW + ++M + F + A +IEQ + A Y + L+L+R+ L Sbjct: 558 KSIQEWERLLQEMSQSLFGETSTQLRAQQMIEQTISQFSKQVQTAGYESPIGLALVRESL 617 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 + + +FL G V +++PMRS+PFK++C+LG+NDG +PR P DL++Q Sbjct: 618 SDKFSTPDALNQFLTGQVTFSSMVPMRSVPFKMICILGLNDGAFPRIALPNSIDLIAQSE 677 Query: 702 K-RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 K RGDRSRR++DRYLFLEALISA+ LY+SY G+S +DN PS+++QEL+ Y+ Q Sbjct: 678 KQRGDRSRRNEDRYLFLEALISARDYLYLSYQGQSAKDNQTIEPSLVIQELLHYLDQKFI 737 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE-----RQSYAREWLPAASQAGK 815 L + +E + + PF P + E + S+ + WL A K Sbjct: 738 LADPQ----NEKPEKFSERIVRRAPLQPFSPTLFASNEHDFEQKGSFDQGWLALA----K 789 Query: 816 AHSEFVQPLPFTLPETVPLE--TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 + + T+P+ + L+ + + +P++ + V + + D EPF L+ Sbjct: 790 SGVLPAKTSTITVPDDIYLDHNDMTALFINPLKLHVNKQYDVVLDEYINVMDDVEPFSLD 849 Query: 874 GLSRYQINQQLLNALVEQDDAERL 897 GLS+ ++ Q LN D + Sbjct: 850 GLSKDKLLVQALNTASATIDYDNA 873 >UniRef50_Q3BM39 Exodeoxyribonuclease V, gamma chain n=19 Tax=Xanthomonadaceae RepID=Q3BM39_XANC5 Length = 1184 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 330/1170 (28%), Positives = 512/1170 (43%), Gaps = 125/1170 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPF-EPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 R+Y SN LD L AL+ + R P +PE++L+ M +WLQ TL+ + G+AAN+ Sbjct: 56 FRLYPSNALDTLAALLAQELRRPMPGQPLLQPEVVLIPQVAMRRWLQSTLAAEHGVAANL 115 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLP-QLLEREDFTLLRHYLTDDS 119 +F P F+ R L + + + W+L L L L YL+ D Sbjct: 116 EFLTPGEFVARALERNLG--AADDDLDMATTQWRLYAALQSDLGSDAALAPLAGYLS-DG 172 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 D K + L+ + A +F++Y +R DWL +WE G + QA LW+++ Sbjct: 173 DALKPWALAGELASVFEKYQAWRRDWLLRWEAG------ADPDDPQARLWRSIA------ 220 Query: 180 GQPRWHRANLYQRFIETLESAT-TCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 R +RA ++++ A P GLP RVF I + P L+ L + +H Sbjct: 221 -TGRQYRARRIGQYLDRHARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHF 279 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 P + YWGD L L R+R EQ NP Sbjct: 280 YLPTPTQGYWGD------LQTLWQRRREDG-----------------AVQLFAEQVQENP 316 Query: 299 LLASWGKLGRDYIYLLSDLESSQ---ELDAFVDVTP------------DNLLHNIQSDIL 343 LL +WG GRD++ L+ D E E+ A+ D D+LL +QSD+ Sbjct: 317 LLQAWGAAGRDFMALVGDYEVVHPLAEIAAYADPLESGRRTLADGGLGDSLLRRMQSDLF 376 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE---D 400 A V ++ D S+ H CH+ RE++VLHD+L A+L++ D Sbjct: 377 HRRAPAAEAVLPA----------VNLHDPSLQVHACHTRLRELQVLHDQLRALLDDARFD 426 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 P L PR+I V+ +ID Y P++ AVFGS D LPYA++D S + E F++LL L Sbjct: 427 PPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASESLAEVFLTLLGL 486 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 P +RF ++L LL +A + E GL LR W++ +G RWG+D + R+ + P Sbjct: 487 PIARFGLHEILDLLASAPIAEAAGLDEAGLERLRSWLHAAGARWGLDAAHRRQHQAPGDD 546 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +TWRF L R+LLG+A A + V P+ + G + L LL L + LA+ Sbjct: 547 AYTWRFALDRLLLGHA-SGADEDIDGVAPWPQLEGSALAALDTLLRLLRVLERHQAALAE 605 Query: 581 ERPLEEWLPVCRDMLNAFF---LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 EW +L A + A+ + + + A+Y VP ++ Sbjct: 606 AMTPVEWRERLLGLLEALIPTMPTAPRAQRALDRLRALIVQFARDAMRAEYAGKVPAEVV 665 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD-- 695 R A L + L G ++ ++PMR +PF+V+CLLGMNDG +PR+ G + Sbjct: 666 RAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGLNRL 725 Query: 696 ---LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 L +++ + GDRS R+DDR+LFL+ SAQ Y+SY+G +D S R PSVLV EL+ Sbjct: 726 TAELGTERRRHGDRSTREDDRFLFLQLFASAQDVFYLSYLGADARDGSVREPSVLVSELL 785 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPF----------DPQNYQPGERQSY 802 Q H + + L H PF + R SY Sbjct: 786 ASAAQYH------------AASNALDTLVVRHPLQPFAAAAFGALGDESDAGADPRRFSY 833 Query: 803 AREWLPAASQAGKAHSEFVQ----PLPFT---LPETVPLETLQRFWAHPVRAFFQMRLQV 855 R+W PA LP LP ++ ++ L+R P F + RL + Sbjct: 834 RRQWRPAVDSLVGQRQPLAPWVAGALPAEGIALPASMSIDALRRLLTDPAGQFLRHRLGM 893 Query: 856 NFRTEDSEIPDTEPFI--LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFG 913 E D EP + GL +Y + QQ+ +A + D E L+ R RA LP G G Sbjct: 894 RLPDPAGEDADLEPLLAPTRGLDQYGLQQQIFDAALAG-DTEHLYARLRARALLPSGPLG 952 Query: 914 EIFWETQCQEMQQLADRVIACRQ--PGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSL 971 + + +++ AD R P QS + + + +++ G +P G+ R + Sbjct: 953 RRQLDERVAQLRPYADAFRQWRGESPAQSRRLQVQIDEIELHGRVPGWYASGVGRVQVGA 1012 Query: 972 LSVAQGMQLWLEHLVYCASGGN-GESRLFLRKDGEWRFP----PLAAEQALHYLSQLIEG 1026 LS ++ LE L+ A+G + R F DG P PL+ QA L++L++ Sbjct: 1013 LSGRSAIRHGLEWLLLRAAGEHAPYVRFFEHDDGLGPHPIDAQPLSQTQARTALAELLQL 1072 Query: 1027 YREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGD 1086 YR+G+ PL P S + + D + + + ++ + +++ + + G Sbjct: 1073 YRQGLQMPLAFAPYSSWKYHQAARGGDLDKAIKEAAGQWQSGFGWSESHSPELRLVTRGR 1132 Query: 1087 DIWYQRLWRQLTPETMEAIVEQSQRFLLPL 1116 D + + S R L Sbjct: 1133 DPF-------ADAQRFAEFAATSHRVYALL 1155 >UniRef50_D2U882 Probable exodeoxyribonuclease v, gamma chain protein n=1 Tax=Xanthomonas albilineans RepID=D2U882_XANAL Length = 1187 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 328/1171 (28%), Positives = 508/1171 (43%), Gaps = 124/1171 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPF-EPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 R+Y SN LD L AL+ + R + P PE++L+ M +WLQ TL+ G+AAN+ Sbjct: 60 FRLYPSNALDTLAALLAEELRRPLPEQPLLAPEVVLIPQVAMRRWLQSTLAATHGVAANL 119 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLP-QLLEREDFTLLRHYLTDDS 119 F P F+ R L + + S+ W+L L L L YL DD Sbjct: 120 QFLTPGEFVAHALERNLG--AADDDLDMTSLHWRLYAALRSDLGADPTLAPLAAYLADD- 176 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 D K + L+ + ++F++Y +R DWL +WE G + + QA LW+ + Sbjct: 177 DPLKPWTLAGELGNVFEKYQAWRRDWLLRWEAGADPDDV------QARLWRRIA------ 224 Query: 180 GQPRWHRANLYQRFIETLESAT-TCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 R +RA +++ P GLP R+F + + P L+ L + +H Sbjct: 225 -SGRAYRARRIGHYLDRYARPDGPLPQGLPPRLFAFAVLNISPDVLRVLATQARVGTLHF 283 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 P + YWGD L L R+R AG + EQ NP Sbjct: 284 YLPTPTQGYWGD------LQTLWQRRR-----------------AGTAVDLFAEQIQENP 320 Query: 299 LLASWGKLGRDYIYLLSDLESSQ---ELDAFVDVTP------------DNLLHNIQSDIL 343 LL +WG GRD++ L+ D E E+ + D D+LL +QSD+ Sbjct: 321 LLQAWGAAGRDFMALIGDYEVVHPLAEIAVYADPLESGQRPLADGGLGDSLLRRMQSDLF 380 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE---D 400 + +D D S+ H CH+ RE++VLHD+L A+L++ D Sbjct: 381 QRRAPRSPAAL----------PTVDKHDPSLQVHACHTRLRELQVLHDQLRALLDDPRLD 430 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 P L PR+I V+ +ID Y P++ AVFGS D LPYA++D S P+ E F++LL L Sbjct: 431 PPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASEPLAEVFLALLGL 490 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 P +RF ++L L+ +A + GL LR W++ +G RWG+D + R+ + PA Sbjct: 491 PIARFGLHEILDLIASAPIAEAAGLDTAGLDRLRGWLHAAGARWGLDAAHRRQHQAPADD 550 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +TWRF L R+LLG+A A+ + V P+ + G + L LL L+ + LA+ Sbjct: 551 AYTWRFALDRLLLGHA-SGAEDDIDGVAPWPQLEGSALAALDTLLRLLRVLDRHQAALAE 609 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAE---TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 P +W +L+A + A+ + + A+Y AVP ++ Sbjct: 610 PMPPAQWRECLLALLDALLPQTPSAPRAQRALERLRTLIDQFARDAARAEYTAAVPAEVV 669 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD-- 695 R L + L G ++ ++PMR +PF+ +CLLGMNDG +PR+ G + Sbjct: 670 RAHFTAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLLGMNDGDFPRRDPAAGLNRL 729 Query: 696 ---LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 L + + + GDRS R+DDR+LFL+ SAQ Y+SY+G +D S R PS LV EL+ Sbjct: 730 TAELGTARRRHGDRSTREDDRFLFLQLFASAQDVFYLSYLGADARDGSVREPSPLVGELL 789 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMP-------FDPQNYQPGERQSYARE 805 Q H P L H P R SY R+ Sbjct: 790 ACAAQYHAEPAAATT------------LVVRHPLQPFAAAAFGAIGAEAADPRRFSYRRQ 837 Query: 806 WLPAASQAGKAHSEFVQPLPFTLPE--------TVPLETLQRFWAHPVRAFFQMRLQVNF 857 W PA +P TLP ++ ++ L+RF P F + RL + Sbjct: 838 WRPAVDSLIGQRQPLPPWIPETLPAMADDALPTSLSIDELRRFLLDPAEQFLRQRLGLRL 897 Query: 858 RTEDSEIPDTEPFI--LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEI 915 D EP + GL +Y + QQ+ AL+ + + + L+ R RA LP G G Sbjct: 898 PDPAQADSDLEPLVAPTRGLDKYGLQQQVFEALLRE-ETDGLYERLRARALLPSGPLGRH 956 Query: 916 FWETQCQEMQQLADRV---IACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL 972 + ++++ AD + + + +G ++ G L G+ R + L Sbjct: 957 QLDQHLRQLRPYADAFGHWCGATPAPPAARLHVHIDGTELHGRLSDWYAAGVGRVKIGAL 1016 Query: 973 SVAQGMQLWLEHLVYCASG-GNGESRLFLRKDGEWRFP----PLAAEQALHYLSQLIEGY 1027 S ++ LE L+ A+G G R F +DG P L++ QA L+ L+ Y Sbjct: 1017 SGRSAIRHGLEWLLLRAAGEGAPFVRFFEHEDGLGPHPLDPERLSSTQAQQALTDLLRLY 1076 Query: 1028 REGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDD 1087 R+G PL +P S A+ + D + + + +A + +A + + G D Sbjct: 1077 RQGQQTPLAFVPYSSWAYYQAARGGDLDKAIKNAAAQWQAGFSWREADRPQLRLVCRGRD 1136 Query: 1088 IWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + P+ A SQ L R Sbjct: 1137 PF-------ADPQRFAAFASTSQHIFGLLER 1160 >UniRef50_C6NU56 Exodeoxyribonuclease V gamma chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU56_9GAMM Length = 1146 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 327/1120 (29%), Positives = 489/1120 (43%), Gaps = 103/1120 (9%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFP 63 V H +RL+ L + + L P + LVQS + +WLQ L++ GI A I Sbjct: 11 VLHGDRLEDLLTAIRQWLGANPLP-PLVEDTFLVQSNAVGEWLQWQLAEGDGICAGIRVS 69 Query: 64 LPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFT--LLRHYL--TD 117 LPA F+W+ + RVL +P ++ ++K ++ W+L+ LLP+L D L YL TD Sbjct: 70 LPARFLWESYRRVLGPRGVPDDTVWSKAALRWRLLRLLPRLAHEADPGGVPLLRYLATTD 129 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--------LVEGLGEAQAWQAPLW 169 S + ++L+ ADL DQY VYR DWL W G ++ L + Q WQA LW Sbjct: 130 SSALERRWRLAGLLADLLDQYQVYRADWLKDWAAGRWTLRDGRGVLRDLPQDQRWQAQLW 189 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 L + G R +++ F++ L A LP R+ G +LP L+AL A Sbjct: 190 HWLCREVTEGGSHFAGRGEIHEAFLQRLREAAPGSLDLPPRLIFFGAVSLPAQSLEALAA 249 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 LG+H+++ + NP Y+W D+ + Sbjct: 250 LGRHLQVLMAIPNPSAYHWSDVA---------------------GADEDLRRQRRRRVLG 288 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESS---------QELDAFVDVTPDNLLHNIQS 340 E G LLA+WG+ GRD++ LL + S Q +D F + T LL +Q+ Sbjct: 289 TSEAGFGPRLLAAWGRQGRDFMRLLDRFDESVEMGPLWGLQRVDFFTEDTGTTLLRQLQT 348 Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 I +L + G R L D S+ H + P RE++VL D LL L Sbjct: 349 RIRDLVDSREPG------------RTLAENDDSLVLHSSYGPLRELQVLQDELLLRLGRG 396 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISLL 458 L PRDI+VMV DI SY+P +QAVFG + RY+P+ I D ++ ++ A + LL Sbjct: 397 RGLRPRDIVVMVPDIASYAPLVQAVFGVYGKNDPRYIPFHIVDLTPQERSNLIRALVWLL 456 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 LP R ++ LLD L RF + E L + W+ + G RWG+ + +L A Sbjct: 457 GLPQGRVTQSEIRDLLDCSALQRRFGLAPEDLPQIHAWLEQGGWRWGLSAAHRADLGFAA 516 Query: 519 TGQHT-WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 G T F L +LLGY + + + E L A L+G L L +L WR+ Sbjct: 517 CGAPTSGAFALQSLLLGY-TNGSDSHFDGIEACAEVGSLDAALLGKLWVLWERLESWRQR 575 Query: 578 LAQERPLEEWLPVCRDMLNAFFLP-DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 L + E W+ R +L FF+ D A+ +E + + + A + +PL + Sbjct: 576 LKEATTPEHWVERARQLLADFFVASDTADREALEQLESALEDWLLQTEKAAWDGPLPLEI 635 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 R+ L+ FL G V CTLMPMRSIPF++VCLLGMND YPR FDL Sbjct: 636 FREAWLDGLESAGDGA-FLGGGVTFCTLMPMRSIPFRMVCLLGMNDEDYPRPDPRRDFDL 694 Query: 697 MS--QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 M+ + GDRSRR+DDRYL LEAL+SA+ LY+S+ GR ++ R PS L+ +L Sbjct: 695 MTLPDMARPGDRSRREDDRYLMLEALLSARDGLYLSWTGRDPRNQENRAPSALILQLQRE 754 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAG 814 I E R + HL PF P+ +P +S+AREW P ++ Sbjct: 755 IVGIW----------GEDALRTRLHLD---PLQPFSPRYLEPDGPESFAREWFPVSTVED 801 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 ++ + P + L L+ + + +F+ +RL V D D E F L+G Sbjct: 802 RSVAVLSPPAARL---ELALLDLKGALSDALASFYALRLGVESPWRDRMAADDEAFRLDG 858 Query: 875 LSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVI-- 932 L ++QI QQL + G LP A G + + M+ L Sbjct: 859 LGQWQILQQLWERAASPAELREGLAAEARRGHLPLAAAGILQQQRLLTLMESLLGSWQAV 918 Query: 933 --ACRQPGQSMEIDLACNGVQITGWLP------------QVQPDGLLRWRPSLLSVAQGM 978 A + +E + +G ++ LP ++ W + + Sbjct: 919 AEALGPEHEVLEDEFLGDGFRLQARLPKDRSWNANPLGIHLRRHTSKLWHGGKARADRLL 978 Query: 979 QLWLEHLVYCASGGNGES-RLFLRKDGEWRFP-PLAAEQALHYLSQLIEGYREGMSAPLL 1036 WLE V G LFL +DG P P+AA+++L L + E + P Sbjct: 979 LWWLELTVLQTKRREGAVLGLFLGQDGWLCAPAPVAADESLAELLAWLG---EALREPHP 1035 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQK-ARTKFLQAY 1075 + + A L + A + + + Sbjct: 1036 LSLDWALALLADADRGDGAGSRRHILGDGRGAAGAWRENW 1075 >UniRef50_Q7VBK2 Exonuclease V gamma subunit n=1 Tax=Prochlorococcus marinus RepID=Q7VBK2_PROMA Length = 1103 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 242/1159 (20%), Positives = 455/1159 (39%), Gaps = 113/1159 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML VY SNR + L ++ + + PF+ I+V + ++WL ++ GI+A I Sbjct: 1 MLTVYRSNRAEWLAEVLAAQLRLNKPK-PFQSVEIMVNTWPTSRWLSEQIATFNGISALI 59 Query: 61 DFPLPASFIWDMFVRVLP-EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 +FP P S + L E+ + +N ++W+++ +LP+LL+ E+ L ++ S Sbjct: 60 EFPFPNSHLRKFVQLFLGLEVTSKDPWNTNQLTWEIIDVLPKLLKEEESKHLHEWIQKGS 119 Query: 120 D-----KRKLFQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAWQAPLW 169 + ++++ L+ A+ ++Y++YRPD +AQW + + L WQ L Sbjct: 120 NNNKELDKRIWTLAKSIANTINEYILYRPDVIAQWWNLDSKPTKSLRDLPPHIKWQPLLL 179 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + L + L+ LP + I G+S+L P+ ++ +QA Sbjct: 180 RLLKTKIK-----SEPICLQINEVVTRLKRKEHSSKELPRDLLIFGVSSLAPIQIELIQA 234 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L + + + P + W K +R D ++P+ Sbjct: 235 LSSVVNVQIFLLTPGQDLWKRCKS----------RREELGNDWKVPM------------- 271 Query: 290 DGEQDVGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDIL 343 DG + P + AS G++G ++ LL L QE D F ++ + L Sbjct: 272 DGMWMLKTPRIEASLGRMGSEFQQLLEGSGEYQLGEWQEKDLFSMPVKIATYNSKEPTFL 331 Query: 344 E-LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 E L+ V + R D+S+ F +R+V+++ D+++ L D T Sbjct: 332 EQLQESLVVNKASIQLHRKHK-------DNSLIFLESPGQRRQVQLIRDQIIQWLATDDT 384 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPA-DRYLPYAISDRRARQSHPVLEAFISLLSLP 461 L PRDII+M + +P I +VF A + LP+ I+DR + +++ + + + Sbjct: 385 LQPRDIIIMTPQVKRLAPLISSVFNDISATNVNLPWKITDRSQIEKPGLIQFILEFIDIA 444 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 SR + ++ LL P L +F + ++ + + + E+G RWGID+ + Sbjct: 445 SSRLTALNLDRLLTNPALQNQFKLDQDEVDRITYCLYETGFRWGIDEKDRN-----GNST 499 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQS-VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 H+ + L R LLG + + + + P+ SS + +LL L + L Sbjct: 500 HSLEWCLERWLLGIVLPNEPNFVEGDIAPF--SSTFTVNEITKWWNLLSLLCKHLKALRN 557 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 R +W+ + ++ ++ L + + + ++++ Sbjct: 558 SRKSNQWVFQLKSIVTDLLENESNRTWEGELFNITIENWSQDSNDCILN--IQPLVIKEI 615 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 L + E +G + I L PMR+IP +V+ L+G+++ V+PR F+L+ QK Sbjct: 616 LTELFSLENGRFGHRSGKITISALEPMRAIPHRVIVLMGLDELVFPRSEERPSFNLLEQK 675 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 GD + D DRY+ LEA++S +Q L I++ R + + + + IDY+ Sbjct: 676 RLLGDPNNCDKDRYVLLEAIMSCRQHLLITWNSRDEKTGEKLEAPAPINQCIDYLKNELS 735 Query: 761 LPGDEALNCDESEARVK-AHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAH-- 817 L + + + P R AR +L ++ + Sbjct: 736 ESDQLGLVQSPPPNPLSNENFIATEYQQPISC-----DRRNLEARIFLDNFTKPKQTALG 790 Query: 818 SEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSR 877 F + + E++ + + W + + LQ+ R + I + F L L R Sbjct: 791 IPFRWEINYKFKESILTNDIVKSWLRAPQITWLEHLQLRSREKKISIETIDTFNLNELQR 850 Query: 878 YQINQQLL--NALVEQDD--------AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL 927 YQ+ + L +E D+ A+ ++ R G LP + E+ E + L Sbjct: 851 YQLLNEELFTQNNLESDNNVLPILLGADDWQKKLRGQGILPPKSAAELECEILEARIASL 910 Query: 928 ADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVY 987 + + G+ E +L N IT + Q + +L L A M WL+HL Sbjct: 911 SSLIRDL---GELEEKNLQINNENITYLIIQ---EDILVVEIGKLKSATIMSAWLQHLQV 964 Query: 988 CASGGNGESRLFLRKDGE----------WRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 C L + + F P+ + A+ L + +G++ V Sbjct: 965 CLYDDKPRKTLIISRSTTKSSQHQYKLSAEFTPILKKDAMEMLQTIYMLVEQGLTECWPV 1024 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR-- 1095 P+SG K Y + ++ F + ++G+ GE + + Sbjct: 1025 PPQSGWELFKARYMKKTNS-----------NNYFKKKWKGSFNQHGENHNSEMILCFGYD 1073 Query: 1096 -QLTPETMEAIVEQSQRFL 1113 I E L Sbjct: 1074 CDAELFLGNKIFENCLNIL 1092 >UniRef50_D0L8X4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8X4_GORB4 Length = 1151 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 277/1197 (23%), Positives = 460/1197 (38%), Gaps = 131/1197 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLS--------Q 52 ML ++ + R D A + LDDP PE++ V + G+ +WLQ L+ + Sbjct: 1 MLHLHRAERTDT-LADALADLLATPLDDPMSPEIVAVPAAGVERWLQQHLATRIGCGTTR 59 Query: 53 KFGIAANIDFPLPASFIWDMFVRVLPEIP----------------KESAFNKQSMSWKLM 96 GIAANI+F PA+ + +L E + + + W ++ Sbjct: 60 SDGIAANIEFLSPAALADAVTAALLTEAAGTDTANAGHEHSAGGGADDPWRPSVLVWSVL 119 Query: 97 TLLPQLLEREDFTLLRHYLTDDSDKR----KLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 +L ++ + ++ ++ + + F + ADLF++Y RP LA W G Sbjct: 120 RVLDDRIDDPELAMIARHVGGGDETSPRIGRRFATARHLADLFERYGRARPTMLAAWAQG 179 Query: 153 HLVEG----LGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP 208 +G +G +WQ W+AL + H A L A LP Sbjct: 180 RDEDGAGGHIGADLSWQPGFWRALRAEVGRP-----HPAEALGDLCARLR-ANPAVTDLP 233 Query: 209 SRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHS 268 R+ + G + + + L AL +H ++H+ +P W I Sbjct: 234 ERLSVFGPTRVTEEFRALLVALARHRDVHVFLPHPSPVLWEAISSSTVAGDRPEETHSPR 293 Query: 269 FEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVD 328 DR LP + +PLLAS RD L L+ ++D + Sbjct: 294 RADRRLPA------------------IAHPLLASL---SRDVQELELRLQPHADVDVHHE 332 Query: 329 VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEV 388 ++L + G D ++ P DSS+ H CH P+R+VEV Sbjct: 333 ----SVLG---------HRPTLLGALHAGLCADDLRQQAVPADSSVEIHACHGPERQVEV 379 Query: 389 LHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR---YLPYAISDRRAR 445 L DRLL + +DPTL PRD+++M D+++++P I+ FG A L ++DR R Sbjct: 380 LRDRLLHLFADDPTLQPRDVLIMCPDVETFAPLIRGAFGQAGLAHPAFALRVRLADRGVR 439 Query: 446 QSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWG 505 Q +P+L+ +++ L R + +V LL + + RFD+T++ L +R W+ S +RWG Sbjct: 440 QVNPILDVVGAVVELAAGRVSAGEVADLLGLEPVRTRFDLTDDDLDRVRDWLAGSNVRWG 499 Query: 506 IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSV-LPYDESSGLIAELVGHL 564 I L GQ T+ GL R+LLG E GEW LP +L G Sbjct: 500 IGLGQRARFGLDGFGQGTFEAGLDRILLGVVAEEQDGEWLGTALPLAGVESTEIDLAGRF 559 Query: 565 ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL 624 A L +L+ L + P + W +++A + + E Sbjct: 560 AEFLARLSTTLEALTETGPRDRWRDALTGVVDALTATSPGDDWQRAQAIRLITDAFGESG 619 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGV 684 A+ + L+ +RD +A L F G + +CT++PMRS+P +V+ LLG++ V Sbjct: 620 PAE-PTVLRLADVRDLMAALLAGRPTRSNFRTGELTVCTMVPMRSVPHRVIVLLGIDGEV 678 Query: 685 YPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 +PR G DL+ P G+R+ RD+DR FL+A+ +A + L + Y G P Sbjct: 679 FPRVQRIDGDDLLGVDPLVGERNPRDEDRQCFLDAICAATETLLVFYSGADPVSGRRIPP 738 Query: 745 SVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG------E 798 +V+V EL D + D A + + V+ HT FD +N+ G Sbjct: 739 AVVVSELADTLRTL----IDPARSPAAAVDPVR-----HHTLHGFDQRNFLDGGVAGVAG 789 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTLP--------ETVPLETLQRFWAHPVRAFFQ 850 S+ E L A + V ++P + L+ L F P+ + + Sbjct: 790 PFSHDAELLDGARAMRTPATTAVPMAARSVPVDDDPDEAGDIDLDLLIEFHTDPIAGYLR 849 Query: 851 MRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYG 910 RL +S D L+ L + I ++ L ++ E G LP Sbjct: 850 QRLGARIPRAESAHDDQLDVDLDPLESWGIGERFLKRMLGGASIEECQAAELRRGTLPPF 909 Query: 911 AFGEIFWETQCQEMQQLADRVIACRQPGQS-MEIDLAC-NGVQITGWLPQVQPDGLLRWR 968 AFG + Q L V R + +++D+ +G ++ G +P V + Sbjct: 910 AFGTRTLASISTVAQNLYRNVAVLRDGSPAMLDVDVTLPDGRRLYGTVPNVFGQRFVTAT 969 Query: 969 PSLLSVAQGMQLWLE--HLVYCASGGNGESRLFLRKDGEWRFPPLA---------AEQAL 1017 S L Q + W+ + A GN + R A + A Sbjct: 970 YSRLKAKQQLTEWIRIVAVAAAADQGNPVAGRVDSGVVVGRAARGAGAARVTFGRPDDAA 1029 Query: 1018 HYLSQLIEGYREGMSAPLLVL----------------PESGGAWLKTCYDAQNDAMLDDD 1061 L LI G+ PL + P+ G + + + A L Sbjct: 1030 RILHDLIRIRDAGLEQPLPLPAEAAAAFAQHDAGGRRPDWGLVNARRSFSGKFGAHLQPH 1089 Query: 1062 STLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 L + +++ R +D + P+ ++ PL + Sbjct: 1090 VRLVFGGDALAEVTFEDILARKAVEDNVLAGIMAPADPDD-PLFCALARAIWSPLLQ 1145 >UniRef50_A9BB00 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BB00_PROM4 Length = 1105 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 243/1168 (20%), Positives = 459/1168 (39%), Gaps = 119/1168 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNR + L ++ + E I+V + +WL +++ GI+A + Sbjct: 1 MLTIYRSNRAEWLANVLAEQLRANPP-GLSENVEIVVNTWPTGRWLGEEIAKINGISALV 59 Query: 61 DFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 FP PA+ + + + L I + + + W ++ LP+LL++E+ +L+ +L D Sbjct: 60 RFPFPAAQLKTLVRKFLGIEVINDDDPWEANQLIWPILNSLPELLQKEEAGVLQKWLERD 119 Query: 119 SDK-----RKLFQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAWQAPL 168 + R +QL+ A FD+Y++YRPD ++ W E +L L + WQ L Sbjct: 120 LSQSGKLSRDEWQLAKTIAYTFDEYIMYRPDVISDWWGTENEINNLKSKLPKYIQWQPIL 179 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 L + Q + L+ LPS + I GI++L PV L+ +Q Sbjct: 180 INLLKQRITQ-----EPFGLQVRNVASKLKKGIAPKQNLPSDLRIFGINSLAPVQLELIQ 234 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 AL +E+ + PC+ W K + ++ N Sbjct: 235 ALSCIMEVKVFLLTPCKDLWSRCKTKRE----------------------EYGEGWKVAN 272 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDIL 343 L A+ G++G ++ LL L E D F L + +L Sbjct: 273 DKLWLLNKQRLEATLGRMGSEFEQLLEGSGEYQLGEWDEKDLFAMPATIALNKQRKPTLL 332 Query: 344 E-LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 E ++ R V IE RS + DSSI+F C P+R+++++ D++L L + Sbjct: 333 EQIQQRLVTNECIEPLQRSLD-------DSSISFTECPGPKRQIQIVRDQILQQLALNKN 385 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLP 461 L P+DI++M ++ ++ I ++F A LP+ I+DR + + I L+ + Sbjct: 386 LEPKDILIMTPQVEKFAHLIPSIFNDVSATGVTLPWKITDRSQYDQPGLTQCIILLMEIA 445 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 +R + ++ LL PV+ + + + + + + E+G RWGI+ LE Sbjct: 446 CTRLTASNLDQLLTNPVIKDLYKLDDSEIDKITNCLQETGFRWGIN-----SLERDGEET 500 Query: 522 HTWRFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 HT + L R L+G + + G + P+ + G+ + +L ++ +GL Q Sbjct: 501 HTLNWCLERWLVGMVIPTIPGLVLGGIAPFSK--GISISELSKWWEILSKICNMLQGLRQ 558 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 +W V + + + D + + I + + + ++ + Sbjct: 559 SHSCMKWGLVLKGLCDDLCNNDRKWSWERQRFLRAIDDWIRAADC--FKKEIKIEVVAEI 616 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 + + +E G + I L PMR+IP K++ L+G+++ ++PR+ GF L+ K Sbjct: 617 VKDLIAKEAGRFGHRTGRITISALEPMRAIPHKMIVLMGLDETIFPRKQQRPGFSLLDHK 676 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 GD D DRY+ LEALIS ++ L I++ GR + PS VQ+ +Y+ Sbjct: 677 HFLGDPRINDKDRYVLLEALISTRETLLITWDGRDEKTGDSLEPSSPVQQFFEYLQHELG 736 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF 820 L S + + P +R R+W+ A + G Sbjct: 737 EKSSMGLLKKPSPNPLNKNNFLSCNNQP----PISCDKRDLETRQWMNA--KQGSRGLTL 790 Query: 821 VQPLPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGL 875 PL + L + + E L+ + A P + + ++ R + I D + + L Sbjct: 791 ALPLNWNLSKNAVNSSSDNELLKSWLATPQLKWLEQ-FHLHPREWNKPIEDLDSLSIPEL 849 Query: 876 SRYQI------------NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQE 923 +++I N Q+++ + + ++ ++ G P + + E + Sbjct: 850 IKFKILKQEFTELITSSNNQIISPEINERESPNWQDKYLGQGVFPPKSAATLESEILGRR 909 Query: 924 MQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLE 983 L + + + ++ G + + + + L + WL Sbjct: 910 WTSLIKSLSKLGEVKRDSLMEDNETGEIL------IANNCTVLVEIGRLKAKTILNTWLT 963 Query: 984 HLVYCASGGNGESRLFLRK----------DGEWRFPPLAAEQALHYLSQLIEGYREGMSA 1033 HL A + + + + + + + P+++ +A L +L + G+ Sbjct: 964 HLKLSAYHKSTKKTVVIARSDSNTKIDSYEVMLSWHPMSSIKAESILDELKQQAHNGLKQ 1023 Query: 1034 PLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRL 1093 V PESG K Y ND F +A+ G+ GE + Q Sbjct: 1024 CWPVPPESGWKLAKARYKKSNDCNEI-----------FRRAWIGDFNKEGERNKPEMQLC 1072 Query: 1094 WR-QLTPETM--EAIVEQSQRFL-LPLF 1117 + + PE + +Q L PL Sbjct: 1073 FGYKAAPEIFLENELFDQCLELLYKPLI 1100 >UniRef50_A2C8A0 Possible exodeoxyribonuclease V gamma chain n=4 Tax=Cyanobacteria RepID=A2C8A0_PROM3 Length = 1103 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 256/1145 (22%), Positives = 446/1145 (38%), Gaps = 123/1145 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDP--FEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 ML +Y SNR + L ++ E+ RL P F+ ++V + ++WL L+ GI+A Sbjct: 1 MLTIYRSNRAEWLARVLA---EQLRLAPPGLFDSVDVVVNTWPTSRWLGEQLASVNGISA 57 Query: 59 NIDFPLPASFIWDMFVRVLP-EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 + FP P S + + +L + E + + W L+ LLPQLLE E+ LR ++ Sbjct: 58 LVRFPFPGSRLRQLVRMILGIDSDAEDPWRASRLVWPLLDLLPQLLETEEAAPLREWVNR 117 Query: 118 DSDK-----RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-----VEGLGEAQAWQAP 167 + R +QL+ AD FD Y +YRP + QW G + + WQ Sbjct: 118 QPSRPGHLNRVQWQLARSIADAFDDYALYRPKLIHQWLEGSDRLLNSSQEMPLTLRWQPL 177 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 + R + L + LPS++ + G+S+L PV ++ + Sbjct: 178 -----LLRLLAERLNVEPFGIQVHRAVSKLRNGDHPAMALPSQLRLFGLSSLAPVQVELI 232 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 QAL +++ + PC W + Sbjct: 233 QALSGLVDVQMFLLTPCPDLWQRCRSRRETLGNE-----------------------WTE 269 Query: 288 NSDGEQDVGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSD 341 +DG + P L A G++G ++ LL L QE D F P + Sbjct: 270 PADGFWLLEAPRLEAILGRMGAEFQQLLEGGGESQLGQWQEGDLFA--APATMACE---- 323 Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPL--DSSITFHVCHSPQREVEVLHDRLLAMLEE 399 + + ++ D+ +PL DSS+ F C R+V+++ D++L Sbjct: 324 --SGQEPTLLEQLQQQLVSPDDHQPLRRRQEDSSLQFLACPGQWRQVQLVRDQILQWFAA 381 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLL 458 DP+L PRD++VM ++ ++P + +VF A A LP+ ++DR + S + + + LL Sbjct: 382 DPSLEPRDVLVMTPQVNRFAPLLASVFNDAAATGVELPWRLTDRSQQDSPGLTQGMLQLL 441 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 + R + + LL P + + +++ L + + +G RWG+D + Sbjct: 442 QIAGERLTATALEGLLANPAIQQQQGFSQDDASSLSRCLQRTGFRWGLDAEER-----GG 496 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 H+ + L R LLG + S G P+ E GL + LL Q + + Sbjct: 497 DETHSLIWCLDRWLLGLVLPSTPGLAPGGAAPFAE--GLEPAQLAKWWQLLAQFSRQLKE 554 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 + R W+ + + + F + + +GA + +++ Sbjct: 555 FRRARTCGAWVELLQGFVEELFGDGGSWAWERQCLLIALEDW--RQIGADCTLLLEAAVV 612 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 D L + L + G + + L PMR+IP +V+ L+G++ V+PR GF L+ Sbjct: 613 ADVLNEALSADSGRFGHRTGALTVSALEPMRAIPHRVIVLMGLDADVFPRHRERAGFHLL 672 Query: 698 SQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ 757 Q+ + GD D DRY+ LEAL+S +Q L I++ R R + VQ+ + + Sbjct: 673 EQQRQLGDPRSSDQDRYVLLEALMSTRQHLLITWNSRDEHTGECRPAASPVQQWLGRLQH 732 Query: 758 SHYLPGDEALNCDESEARVKAHLTCLHTRMP---FDPQNYQPGERQSYAREWLPAASQAG 814 + L + + ++ P D ++++ AR WL Sbjct: 733 ELSDETFQGLCREPAANPLERSNFLSQGSQPPPSCDRRHFE-------ARRWLDKTLAPP 785 Query: 815 KAHSEFV---QPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI 871 + + E L R+ P + + QV R + D E Sbjct: 786 PLALALPLHWSSVSLEASAVISSELLLRWLIAPQLIWLEQ-FQVTPREWFDPVEDLEALD 844 Query: 872 LEGLSRYQINQQLL-----------NALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQ 920 L+ R+ + +Q L NAL++ +A R+ G LP GA + E Sbjct: 845 LDEWHRHGLLKQRLSELLGHLPTDENALLQGSEAGDWKHRYAGQGTLPPGAAATLECERL 904 Query: 921 CQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQL 980 Q Q L +++ P + ++LA Q+ D ++ +P L M+ Sbjct: 905 EQRWQHLQATLLSM-GPCSTRRLELADGSRQML-----WAGDTVVVVQPGQLKSRGVMEG 958 Query: 981 WLEHLVYCASGGNGESRLFLRKDG----------EWRFPPLAAEQALHYLSQLIEGYREG 1030 WL HL CA+ + + + + G R+ PL AEQA L L +G Sbjct: 959 WLSHLQVCANHTLTSATVVVARCGPAAKKDQFEIALRWQPLPAEQAREQLIALQALACQG 1018 Query: 1031 MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWY 1090 +S V P SG A+ ++ + F Q++ G V+GE + Sbjct: 1019 LSQCWPVPPMSGWAYANA-----------NNKLAGRGEEAFRQSWSGGFNVQGERERAEM 1067 Query: 1091 QRLWR 1095 Q + Sbjct: 1068 QLCFG 1072 >UniRef50_A6W6P1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W6P1_KINRD Length = 1158 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 274/1222 (22%), Positives = 471/1222 (38%), Gaps = 166/1222 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVE-RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG---- 55 ML V+ S + L + ++ DPF P+++ V + G +W+ LS G Sbjct: 1 MLHVHRSESANTLVTALAGLLRDPAPGADPFAPDVLAVGARGTERWIAQRLSHHLGAGDP 60 Query: 56 --------IAANIDFPLPASFIWDMFVRVLPEI-----PKESAFNKQSMSWKLMTLLPQL 102 I A +D PA + + L + S++W ++ +L ++ Sbjct: 61 AAGGGDDGICARVDTSSPAHLLDGVLAAALERTRPGTGDAVERWAPSSLTWDVLEVLDEI 120 Query: 103 LE---------REDFTLLRHYLTDDSDKRKLFQLSSKAA-------------DLFDQYLV 140 R +F LLRH+L LF +Y Sbjct: 121 APADGGPAPDGRPEFALLRHHLRHHPGDDGPGGPGGPGTPPVRRTAAAARVAGLFARYGA 180 Query: 141 YRPDWLAQWETGHLVEG---LGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETL 197 RP LA W G L WQ +++A+ E A L L Sbjct: 181 ARPQLLADWAAGRDDAPGAPLPADLRWQPEVFRAVRERVGLPA-----PAELLDDACAAL 235 Query: 198 ESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYL 257 + L R+ + ++ L L+ L AL +H E+HLL +P W Sbjct: 236 RT-DPALSDLGPRLAVFLVTRLATSRLRVLSALAEHREVHLLLQHPSPALW--------- 285 Query: 258 AKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYI-YLLSD 316 ++ + +PLL S + R+ L Sbjct: 286 --------------DATAAALRTDPGPRRAAWAAHAPGRHPLLRSMARDVRELQVRLAHA 331 Query: 317 LESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITF 376 ++ LL +Q+ + ++ DP D S+ Sbjct: 332 APGHTDVHHPAPEPAPTLLGTLQAAL---------------ARDAEPAPGPDPGDRSVQV 376 Query: 377 HVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG-SAPADRYL 435 H CH R+VEVL + +L +L+ DPTL PRD++V D+++++P + A F + L Sbjct: 377 HACHGRARQVEVLREVVLGLLDADPTLQPRDVLVACPDVETFAPLVSAAFATDSHPGGGL 436 Query: 436 PYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQ 495 ++DR A +++P+L + LL L SR + +VL L + RFD+ +E L LR+ Sbjct: 437 RVQVADRSALRTNPLLGLAVRLLGLAQSRAGATEVLDLAAAAPVRRRFDLDDEDLEQLRE 496 Query: 496 WVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES-----------AQGEW 544 W +G+ WG+ + +L + Q TWR GL R+L+G A+ G Sbjct: 497 WTVAAGVHWGLSARHRGAWQLGSLDQGTWRAGLDRLLVGVAVGGAVEDDLVGRTGEDGLL 556 Query: 545 QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAE 604 +V+P + +L G A LL +L+ L + W D + E Sbjct: 557 GAVVPLADVESSRIDLAGRFAELLDRLDAAVTRLQGRHGVAAWCDTLLDAVLDLADTAPE 616 Query: 605 TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTL 664 + + ++ + + A V L+ + +++R F G + +CT Sbjct: 617 DAWQVAQLRRELGVVAHDAARAG-TARVGLTDVAATISERFAAHPQRANFRTGALTVCTP 675 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQ 724 P+R++P +VVCLLGM+DG +PR P D++++ P GDR R +DR + L+ + SA+ Sbjct: 676 APVRAVPHRVVCLLGMDDGAFPRAGGPDADDVLARDPHVGDRDPRGEDRQVLLDLVRSAR 735 Query: 725 QKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLH 784 L ++Y GR ++ + P+V V E++D + +H V+A + H Sbjct: 736 DALVVTYSGRDVRTGAVLPPAVPVGEVLDALEAAH--------------PGVRARIEVHH 781 Query: 785 TRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPF----------TLPETVPL 834 P D +N+ PG + + + A + +P P + L Sbjct: 782 PLQPTDRRNFTPGALGT-DGPFSHDGTAFSGADAGHREPAPVPPFLPAALPPAPAADLDL 840 Query: 835 ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDA 894 +TL +F HP R F + RL V T + E D P L+ L ++ + + L A + A Sbjct: 841 DTLVQFLQHPARGFLRQRLDVASATREEEPDDALPVQLDALQKWAVGDRALAARLRGVAA 900 Query: 895 ERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDLACN----- 948 + R A G LP G G + +A P +S++++L + Sbjct: 901 PEVVRLEGARGGLPPGPLGVAVLREVGPVVDAIAGVAAEFDTAPPRSVDVELDLDVPGVG 960 Query: 949 GVQITGWLPQVQP-------DGLLRWR--PSLLSVAQGMQLWLEHLVYCASGGNGESRLF 999 +++TG + V+P G + S + Q ++ W+E L A+ E R Sbjct: 961 QLRLTGNVRGVRPVRGGGRATGEVAVTTVYSRIKGKQTLRAWVELLALSAAHPGTEFRTV 1020 Query: 1000 L------RKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQ 1053 L G P+ ++ A L L+E G+ PL + ++ AW + + + Sbjct: 1021 LVGRGDRGSTGLLTLGPVRSDAARDLLVDLLELRAVGLRFPLPLPVDTAAAWAQEAWRGR 1080 Query: 1054 NDAMLDDDSTLQKARTKFLQAY--------EGNMMVRGEGDDIWYQRLWRQLT------P 1099 D+ L+ AR + + E N+ V G + + W T P Sbjct: 1081 -----APDACLRAARRAWTSDFSFDKEDRQEENVTVWGAERPVEHLVRWEPPTTLPPGVP 1135 Query: 1100 ETMEAIVEQSQRFLLPLFRFNQ 1121 T E +V + LL + R ++ Sbjct: 1136 TTFEGLVRRVWEPLLGVQRMDE 1157 >UniRef50_C6HV34 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV34_9BACT Length = 1124 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 315/1178 (26%), Positives = 515/1178 (43%), Gaps = 129/1178 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVE---RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 +R++ S+R+++L + E DP P ++ Q+ +WL L+++ GI+A Sbjct: 3 IRLFESHRMEILAEAFVATLASAAEEGDLDPLRPRTVIPQNPVTGRWLSFYLARRTGISA 62 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 ++D PL +I F R+ F+++++ +++ LLP LL F+ + H+ D+ Sbjct: 63 SLDLPLAGRYIRGFFDRLHGPASGTLHFDRETLLLRILALLPDLLPLPAFSPVAHFAGDE 122 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG--HLVEGLGEAQAWQAPLWKALVEYT 176 + +L+ L++ ADL+D+ ++YRP+ L WE G + + W A LW+ L Sbjct: 123 PESLRLYDLAALLADLYDRSMIYRPELLLAWEEGLGGRDDDPVGPEGWPAVLWRLLSGPD 182 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH--I 234 L HRA + RF+ P LP + + G++ + P+ L+ + LG+ Sbjct: 183 RPL-----HRARMMVRFLSG--EDPVPPEILPPALTLFGLTGMAPLDLRFFRTLGERHGC 235 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 + L F NP R YWGD+ +R+R + E + LFR Sbjct: 236 AVDLFFLNPSREYWGDVV--------RSRRREETPESLQPYLFR---------------- 271 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVN 354 G PLL+SWG R L+++ + L F P LL IQ DIL L +R + Sbjct: 272 -GTPLLSSWGGEFRTVHESLAEIPEAHRL--FFGTEPGGLLGQIQEDILTLFDRGEEVRS 328 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 ++ + D S+ RE+E+L DRLL + DPTLTP D++V+ D Sbjct: 329 GRI-----ERKEIPRADRSVEIVSATGRVREIEMLRDRLLELFAGDPTLTPEDVVVLAPD 383 Query: 415 IDSYSPFIQAVFG---------------------SAPADRYLPYAISDRRARQSHPVLEA 453 I Y+ +++VF S D +P+ ISDRR + P +A Sbjct: 384 ILPYAGIVRSVFSPGISPSGGRAGTNGGEGSAGSSEDGDPRIPFVISDRRETDASPAFQA 443 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 + LLSLP R ++ LL VP +A RFD+ + + +R+ + E G RWG D ++ E Sbjct: 444 LLLLLSLPGERVTVSHLVTLLAVPSIARRFDLGGQKIDRIREILAEGGFRWGRDIEDRSE 503 Query: 514 LELPATGQHTWRFGLTRMLLGYAMESAQGEWQ-SVLPYDESSGLIAELVGHLASLLMQLN 572 + P+ H++ +GL R+LLGYA + V P + E+ G L+ L L+ Sbjct: 504 V-APSVDTHSFFWGLDRLLLGYACGPEEAPEGLPVPPVAVTEDPGGEIAGALSRFLWTLD 562 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 L P EW + +L FF P AE + + ++ I A + + Sbjct: 563 RHLERLKDPHPAREWPGLLATILEIFFDP-AEGDPVLEILFALPGEIREGFSRASFDGEI 621 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 + +A+ + RFL G V+ ++P+RS+PF+VVCLLG+NDG +PR P Sbjct: 622 SSRWMGRHIARMAESREGRDRFLTGGVSFGRMVPLRSLPFRVVCLLGLNDGEFPRVHHPP 681 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FD ++ +P+ GDRSRR+DDR LFLEAL+SA+Q L++SY+GR +D S + PSVL++E Sbjct: 682 SFDWLAARPRPGDRSRREDDRTLFLEALLSARQVLWLSYLGRESRDGSPKEPSVLLREFE 741 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG---ERQSYAREW--- 806 D + E ++ + P P +Y S++R W Sbjct: 742 DVVA---------EGFTGEGGEEIQKQILLEAPVDPLSPSHYGDSPDPRLHSFSRSWREV 792 Query: 807 LPAASQAGKAHSEF-----VQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 L A+ G F + P+P + L+ L+ F ++P R F RL + R + Sbjct: 793 LDASRNDGWKAPVFWDRDLLLPMPEPGAAGILLDDLRFFHSNPARFFLLRRLGFSSRARE 852 Query: 862 SEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC 921 ++PD EPF L L +++ D R F G +P+ G + Sbjct: 853 IDLPDDEPFSLS-----------LREILKGLD----QRSFEVDG-IPWPPLGPLQLSEGI 896 Query: 922 QEMQQLADRV----IACRQPGQSMEIDLACNGVQITGWLPQV---QPDGLLRWR---PSL 971 + R+ +++EI L GV++ G L + G +R P Sbjct: 897 RHKGDHVGRIGRLLGLLSGEPEAVEISLELLGVRLVGRLSGILTKTEGGRVRVVDLWPGK 956 Query: 972 LSVAQGMQLWLEHLVYCASGGNGESRLFLR----KDGEWRFPPLAAEQALHYLSQLIEGY 1027 + + + +LEHLV C L + F P A L +E + Sbjct: 957 IYPSHQVTAYLEHLVACRGIPGYVGTLLCGVVPHNPEAFLFWPSPP--AEGGLESFVEAF 1014 Query: 1028 REGMSAPLLVLPESGGAWLKTCYDA--QNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEG 1085 + PL PE A+++ + ++++ ++A + A G Sbjct: 1015 QVAGERPLPFDPEISLAYIRKIRSKAAREVQEGEEETVGRQAAMRAWDAPAPPDRDEGLR 1074 Query: 1086 DD-----IWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 D W +RL+ + R L PLFR Sbjct: 1075 DPRSLPTFWSRRLFAGRPLPLEPDFPSWAHRLLDPLFR 1112 >UniRef50_A2C3H2 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=2 Tax=Prochlorococcus marinus RepID=A2C3H2_PROM1 Length = 1097 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 234/1172 (19%), Positives = 449/1172 (38%), Gaps = 132/1172 (11%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDP--FEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 ML +Y SN+ + L ++ + RL+ P E I+V + ++WL LS I A Sbjct: 1 MLTIYRSNKAEWLAEIL---GQELRLNPPEITEEVNIIVSTWPSSRWLSEKLSIINNINA 57 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKE-SAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 + +P P +++ + R++ P E + K + W ++ LLP+L++ E+ ++R +L Sbjct: 58 LVKYPFPGTYLKRLVKRIIGIDPDEKDPWEKNQLVWNILELLPELMKEEEAQVIRSWLEI 117 Query: 118 DSDK-----RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKAL 172 K L+ L++ A+ FD Y++YRP+ + QW + + E + LW+ + Sbjct: 118 SDKKDTQINLNLWDLANNIAETFDDYILYRPEIIKQWLSKKTKKRSREISVNKNILWQEI 177 Query: 173 VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 + + ++ I+ L+ P +++ G+S+L P+ + +QA K Sbjct: 178 LFNLLYKKINKDPFCIQVEKAIKRLKKDDISKLDYPKNLYVYGLSSLAPLQIDLIQAFSK 237 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE 292 I I + +PC W + + D + Sbjct: 238 VINIKIYIISPCNDLWQRCEARRLQFRNT-----------------------WNTPPDRQ 274 Query: 293 QDVGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDILELE 346 + +P L A G++G +Y LL L E D F +L +I ++ Sbjct: 275 WLIESPRLEAFLGRMGAEYQQLLEGSGEYQLGDRNEEDIF------SLTADIATNKGNKP 328 Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 N ++S+N + D S+ F R+VEV+ D +L + ++ + PR Sbjct: 329 NLLEQLQQELLSTKSENILTKEKSDKSLLFLKSPGKYRQVEVIRDYILQLFSDNREIQPR 388 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 DI++M +DSY+P I +VF + + LP+ I+D+ ++ ++L + SR Sbjct: 389 DILIMTPQVDSYAPIITSVFNNIDKNTTQLPWVITDKSQEDKVGLIHFVLNLFEISVSRL 448 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWR 525 + LL P L + +I+ + + + + + +G WG+D H+ Sbjct: 449 TASIFENLLINPALRTQQNISIDEVSDIIKNLQSAGFTWGLDSSER-----YGEETHSLC 503 Query: 526 FGLTRMLLGYAMESAQ-GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPL 584 + L R LLG + + PY E+ AE + +L +L + + +R Sbjct: 504 WCLERFLLGLVLPDNPINGISHISPYSENISS-AEFIKAWG-ILSKLCNYIDVIRSKRSC 561 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQR 644 +EW+ + ++ F E + + + +++D + + Sbjct: 562 KEWIKLITSLVKDLFGDGGEWAWEEQQLLTVVNNWG--LITDNCELEIDCLVVKDIITKA 619 Query: 645 LDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG 704 L G + I L PMR+IP K++ ++G+ +PR F+L+ +K + G Sbjct: 620 LSSTNGKFGHRTGKITISALEPMRAIPHKIIIIMGLESRTFPRIENRRSFNLLERKRELG 679 Query: 705 DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD 764 D ++ D DRY LEALIS +Q L +S+ + + + P +Q+ ++Y+ Sbjct: 680 DPNQYDKDRYSLLEALISTRQNLLVSWNSKDEKTGEDLEPPSPIQQWLNYLK-------- 731 Query: 765 EALNCDESEARVKAHLTCLHTRMPFDPQNYQP---------GERQSYAREWLPAASQAGK 815 + + P D N+ + AREWL A Sbjct: 732 -----IKLGDNTFKDILIEPPANPLDHFNFIKTENSQIMSCDRKNLEAREWLEKAI---- 782 Query: 816 AHSEFVQPLPFTLPETVPLETLQR--------FWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 LP E + + L+ + +P + + ++ R + I D Sbjct: 783 PTKNISLALPLKRKE-INVSELKSYSFEKTKEWLLNPQITWLKEH-EIQSREFVNLIEDN 840 Query: 868 EPFILEGLSRYQINQQ------LLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC 921 + L L RY++ + LLN ++D+ + G P G I + Sbjct: 841 DFLELSELERYKLLKHRLQSSDLLNINHTKNDSNYWEENYSGKGVFPPKGSGLIEKDLLQ 900 Query: 922 QEMQQLADRVIACRQ-PGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQL 980 + L + A + +S+E+ G L++ L M Sbjct: 901 ERWNNLISAIYATGKITKRSIEMQELEGEFYFGG-------KNLIQIEVGSLKYKTLMNG 953 Query: 981 WLEHLVYCASGGNGESRLFLRKDGEWR----------FPPLAAEQALHYLSQLIEGYREG 1030 WL HL A+ L + K ++R P+ ++A L QL G Sbjct: 954 WLNHLYLSANSSFNYKTLIISKKTDYRKKIQFEVSKEILPINTKEAKKNLRQLHRLATAG 1013 Query: 1031 MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWY 1090 + + PESG + D + + F + +EG++ +GE + + Sbjct: 1014 RNNCWPIPPESGLDYALATKDNNKNE-----------QDLFQKKWEGDLYRQGERETLAM 1062 Query: 1091 QRLWRQ----LTPETMEAIVEQSQRFLLPLFR 1118 + + + T E+ + P+ + Sbjct: 1063 ELCFGKKCKASTFLDFESFNDVLMTLYEPILK 1094 >UniRef50_B2I2P5 Exonuclease V gamma subunit n=14 Tax=Acinetobacter RepID=B2I2P5_ACIBC Length = 1211 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 256/1137 (22%), Positives = 458/1137 (40%), Gaps = 135/1137 (11%) Query: 2 LRVYHSNRLDVLEA--LMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 + V S R+DVL L + + +V S + QWL L+++ G++AN Sbjct: 3 IHVIQSQRIDVLLQGVLASTSQPSTHPLQVLKAQHFIVPSPAIEQWLIQKLAEQQGMSAN 62 Query: 60 IDFPLPAS-FIWDMFVRVL---PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL----- 110 F F W + +VL E +++ + W++ L + ++ + ++ Sbjct: 63 YQFHQRVRGFQWYAYQQVLTAHKEQVRKANIPRLIFKWRVHQALQEFIQPDVMSIDSSHP 122 Query: 111 ---LRHYLTDDSD------------KRKLFQLSSKAADLFDQYLVYRPD----------- 144 + + D +D ++ L+ ++ + ADLF Y+VYR Sbjct: 123 LHSIVQRIYDSADRLEQGIEKQLKKQKMLYWVAEQVADLFSNYMVYRGQCQRGCENMCTC 182 Query: 145 ---WLAQWETGHLVE------------------GLGEAQAWQAPLWKALVEYTHQLGQPR 183 WLA W G ++ E + WQ LW+ ++ H+ Sbjct: 183 PNNWLAAWGQGRSLDIEKYIAHKDKEVSAFTLQQTQELERWQRWLWQ---QHFHEDFMQM 239 Query: 184 WHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNP 243 L+ + +E E LP ++ I + LPP LQ L+ LG++I++ +L NP Sbjct: 240 QQIDELFWQELEHPERQKKALSRLPQQIVIFTLLDLPPSQLQFLRRLGQYIDVLILHYNP 299 Query: 244 CRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL---FRDSENAGQLFNSDGEQDVGNPLL 300 + YW D DP + + + D N L + ++ +PLL Sbjct: 300 SQEYWADSVDPLWKQRYDLGVKERFIAKNPQATDAEIADFFNKFTLNFNAEARESRHPLL 359 Query: 301 ASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 GK RD+ LLS+L + +E +DAFVD P++LL +QSDIL L Sbjct: 360 TRLGKQARDHFSLLSNLSTGEEGKWVDAFVDDFPESLLGKVQSDILHLVEPQA------- 412 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT--LTPRDIIVMVADI 415 + L P D SI HVCHS R++EVL ++L+ L + P DI+V+V ++ Sbjct: 413 -----KQYELAPNDDSIQIHVCHSTLRQLEVLKEQLIGWLAKPHEQPRRPNDILVLVPNL 467 Query: 416 DSYSPFIQAVFGSAPADR--YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLAL 473 P I++VF + ++ +LP I+ + + A I + L RF ++ Sbjct: 468 AEVEPLIRSVFPATATEQGVHLPVKIAGIASLDALNAWRAVIGRIHLMQGRFSFDEFADW 527 Query: 474 LDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG--QHTWRFGLTRM 531 L + R+ + + + + ++G + G+D ++++ +++++F L R+ Sbjct: 528 LGLHATQQRYALEYAQVERILNLLADAGFKRGLDAEHLKRSLCDGDDDYRYSFKFALERL 587 Query: 532 LLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL-----AQERPLEE 586 LG A+ + VL Y + EL+G L + LN R L + +E Sbjct: 588 ALGIAIP-EHATFNQVLSYAKVQPGDFELIGTLIQIYQDLNERRDWLIMHEQKKSHTVEY 646 Query: 587 WLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD-------AVPLSLLRD 639 WL + F I ++ + ++ + +PL + D Sbjct: 647 WLQTLSQDIIEFEQAGVTALKTAREIVKKQERMLTLASYYAETETGTLRKITLPLPYILD 706 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-S 698 E+ + L+ + +Q G + + +R +P++++ +L ++ G +P + + FDLM + Sbjct: 707 EIQRTLENQ-TAQAEPTGQITFAQIGQIRPLPYRLIVMLNLDAGQFPNRDTHVPFDLMDA 765 Query: 699 QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG-- 756 + + GDRSR +DD+ FL+AL+ AQ+ L++ Y G + D R PS ++QE +++ Sbjct: 766 LRQQLGDRSRLEDDQGAFLDALLLAQENLWLFYNGFDVNDGEVRDPSSILQEFREHLALI 825 Query: 757 -QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ-SYAREWLPAASQAG 814 + D + L LH PFDP+ + R Y W A Q Sbjct: 826 VKPEPNAPDREVIEGIEIPTQLKQLYHLHYLQPFDPKGFMAENRYIRYQDHWFNVAMQIQ 885 Query: 815 KAHSEFVQ----PLPFTLPETVPLE--TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTE 868 +A P +P+ + L+ + P R + + L V S + E Sbjct: 886 QASGVLKPWANISYPLEIPDMLVLDSHQWIQDVTFPARLYLK-TLGVENLGNVSVLDQNE 944 Query: 869 PFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET-------QC 921 P +L+GL RY I L +Q E L + LP G W+ Sbjct: 945 PLLLDGLGRYTIR-HFLQQNEQQAQPEVLLDQ------LPVGKVQYSAWQQGIFEQECLL 997 Query: 922 QEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLW 981 + + A V Q + L N +P+ + + S + ++W Sbjct: 998 ERLHHYAPAVTQTTQRVWRIAKQLHMN-----ITVPKSETQDWVSMEASSARAKRRAKVW 1052 Query: 982 LEHLVYCA-----SGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSA 1033 LE+L++ A S G R+ + D +++EQA YL + +R Sbjct: 1053 LEYLLWLAYLNEGSAGTERRRIVVFSDQTVICKGISSEQARQYLQPWFKIWRYAQQQ 1109 >UniRef50_Q3AJ30 Exodeoxyribonuclease V, gamma subunit n=5 Tax=Synechococcus RepID=Q3AJ30_SYNSC Length = 1081 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 282/1167 (24%), Positives = 452/1167 (38%), Gaps = 140/1167 (11%) Query: 1 MLRVYHSNRLDVLEALMEF-IVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML VY SNR + L L+ ++E++ P E ++V + ++WL L+ GI++ Sbjct: 1 MLTVYRSNRAEFLARLLSRQLIEQQP--GPLETVEVMVNTWPTSRWLGEQLATANGISSL 58 Query: 60 IDFPLPASFIWDMFVRVL-PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD- 117 + FP P S + + +VL ++ + + W ++ LLP+LLE+ LR +L Sbjct: 59 VRFPFPGSRLRQLVRQVLHLPAQEDDPWRAGQLVWAVLELLPELLEQPVAQPLRVWLAQR 118 Query: 118 ----DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALV 173 R +QL+ AD D Y +YRPD L QW+ + WQ LW+ L Sbjct: 119 EGTASGLTRDRWQLARSIADAMDDYALYRPDQLEQWKQPRPDD------DWQPVLWRLLA 172 Query: 174 EYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH 233 + PR + +E L P LP R+ + GISAL PV + +QAL Sbjct: 173 QRL-----PRAPFGLQVREAVECLRRGDVDPALLPERLRLFGISALAPVQVDLIQALSGL 227 Query: 234 IEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQ 293 + + + PC W RR S D L DG Sbjct: 228 LAVEIYLLTPCPDLWQRCGS-----------RRASLGDE------------WLIPPDGGW 264 Query: 294 DVGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDILELEN 347 P L A G++G ++ LL L +E D F ++Q E Sbjct: 265 LAEAPRLEAVLGRMGAEFQQLLEGSGEAQLGERREGDLFA--------GSLQIAAAEERQ 316 Query: 348 RAVAGVNIEEFSRSDNKRPLDPL--DSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 + ++ +++ L+ D S+ F P REV+++ DR+L L DP L P Sbjct: 317 PTLLDQLQQQLVDAESIAELNRSSDDQSLLFQAAPGPWREVQLVRDRILQWLAADPDLEP 376 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPA-DRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 RD++VM I+ Y+P + +VF A LP+ ++DR + S + A +LL L +R Sbjct: 377 RDVLVMTPQIERYAPLLSSVFNDTAAFGVDLPWRLTDRSQQSSPGLSMAMFTLLELAATR 436 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 + + LL P L + +T E + Q + SG RWG+D H+ Sbjct: 437 LTATGLERLLANPALQGQQGLTPEEAVLITQTLQRSGFRWGLDARER-----GGDEVHSL 491 Query: 525 RFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 R+ L R LLG + G P+ + L + + +LL ++ L + RP Sbjct: 492 RWCLDRWLLGLVLPVEPGLAPAGAAPFQQ--ELDPDRLVRWWTLLDRVARMLDRLREPRP 549 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL--SLLRDEL 641 W+ + + +L F A T Q W A + E + + L ++ + L Sbjct: 550 CHGWVELLQSLLQELFAEGG----AWTDEAQSWAAALEEWRLRAHDCPLDLDAAVALEVL 605 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 + L + +G + I L PMR+IP KVV L+G++ +PR GF L+ Q+ Sbjct: 606 QEALSVDSGRFGHRSGALTISALEPMRAIPHKVVILMGLDSADFPRPSRRPGFHLLEQQR 665 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 + GD D DRY+ LEAL+SA++ L IS+ GR + + P+ V++ + + + Sbjct: 666 RLGDPRSSDQDRYVLLEALMSARRHLLISWCGRLERTGEPQPPAAPVEQWLSVLQEQLQR 725 Query: 762 PGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFV 821 G L P +N++P S R L A A + Sbjct: 726 AGAS-----------TEGLLVTPAANPLSRENFRPEAPLSCDRRQLEARRCLDAAPASVP 774 Query: 822 QP-----LPFTLPE--------------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 P PE + E L + P +A+ Q R + Sbjct: 775 NPQGLAWASLWQPEINDDEAEGRDGDDLALDPEALLAWLQQPQKAWLQAR-GLRPGEGIE 833 Query: 863 EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQ 922 + D E LEGL RY + L A G LP GA + E Q Sbjct: 834 AVEDLEALELEGLQRYLLLNHELEEQFILGSAPDWTASLAGQGVLPAGAGAALEQEELQQ 893 Query: 923 EMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWL 982 Q L ++ + + + + LA + + D + +P +L+ A M+ WL Sbjct: 894 RWQALQRQLASLGPCRREVPV-LAGLPMPLL-----YAGDTQVVVQPGMLTAAAVMRGWL 947 Query: 983 EHLVYCASGGNG--------ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAP 1034 +HL+ CA G S + R+ L +A L QL R+G+ Sbjct: 948 QHLLLCAEGSAPAAGSAVVARSTRVAGAEVHVRWSVLPTVEAEDQLQQLARLARQGLERC 1007 Query: 1035 LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 V P+SG + + D F + ++ EG Q + Sbjct: 1008 WPVPPKSGWQMVAKERRKPGEGQQD-----------FRKTWQD------EGATPLMQLCF 1050 Query: 1095 RQ--LTPETME--AIVEQSQRFLLPLF 1117 + M+ + Q PL Sbjct: 1051 GSDVAAEQLMDQAGFQQACQLLYGPLM 1077 >UniRef50_A5GLW8 Exodeoxyribonuclease V gamma chain n=4 Tax=Synechococcus RepID=A5GLW8_SYNPW Length = 1105 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 261/1143 (22%), Positives = 444/1143 (38%), Gaps = 115/1143 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLR+Y SNR ++L L+ + PFE ++V + ++WL L+ GI+A + Sbjct: 1 MLRIYRSNRAELLAQLLAQELNLNPP-GPFEQVEVVVNTWPTSRWLGERLASFNGISALV 59 Query: 61 DFPLPASFIWDMFVRVLP-EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD-- 117 FP P S + + VL E P E + + + W ++ +LPQL++ E+ LR + + Sbjct: 60 RFPFPGSRLRQLAQAVLSKEPPLEDPWRAERLVWTVIAVLPQLMQCEEAKPLRQWWNNQR 119 Query: 118 ---DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE 174 D+ R+ + L+ + AD D Y +YRP LA W G + L WQ L +AL E Sbjct: 120 TTSDALTREQWLLARQLADAVDDYALYRPQDLAGWLAGDDGDHLPAVLRWQPLLVRALAE 179 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 P Q+ ++ L S LP R+ + G+S L PV + LQAL + Sbjct: 180 RL-----PCEPFGLQVQQAVDQLRSGQAPATPLPKRLRLFGLSNLAPVQIDLLQALAAVM 234 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++ L PC W + R+RR + DG Sbjct: 235 QVELYLLTPCPDLWE---------RSAQRRRRLG--------------ENWTASPDGTWL 271 Query: 295 VGNPLL-ASWGKLGRDYIYLLSD-----LESSQELDAFVDVTPDNLLHNIQSDILELENR 348 + P L A G++G ++ LL L S+ + D F D Q +LE R Sbjct: 272 IEAPKLEAILGRMGGEFQLLLEGSGDCLLSSTDQADLFADPVAMAASEGRQGSLLEQLQR 331 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 +A + D S+ F C P REV+++ D++L + +D TL PRDI Sbjct: 332 QLASSEHFPLQHT-------SADRSLLFMGCAGPWREVQLVRDQILHWMADDSTLQPRDI 384 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 +VM D++ Y+P + +V A LP+ ++DR + S + +AF++LL L R + Sbjct: 385 LVMTPDVERYAPLLASVLSDQDATGVDLPWRLTDRSQQNSPGLQQAFMTLLQLSAERLTA 444 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 + AL+ P + + + + SG RWG+D + H+ R+ Sbjct: 445 TGLEALMSNPAFLDLQGLEAQEAMDITAALQRSGFRWGLDREER-----HGDDTHSLRWC 499 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 L R L+G + G + L + + LL Q+ W L Q W Sbjct: 500 LDRWLIGLILPDEPGLALGSCA-PAVADLSLQQLERWWPLLDQIAQWIAQLRQSGSCTVW 558 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 + R +L+ F + + I+Q + + + + + +++ L + L Sbjct: 559 VERLRRLLSDLFGDGGAWDWELQAIQQGLETWLIQAGHCELN--LETTVVIAVLEEALSA 616 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + +G + + L PMR+IP +V+ L+G++ +PR GF L+ ++ + GD S Sbjct: 617 DSGRFGHRSGAMTVSALEPMRAIPHRVIVLMGLDAASFPRTRERPGFHLLERQRRLGDPS 676 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 D DRY+ LEAL+S++Q L IS+ R + P VQ+ ++ + Q + Sbjct: 677 STDQDRYVLLEALLSSRQHLLISWSSRDERRGDALPPCPPVQQWLNLLRQELSEEAMAQV 736 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLP-- 825 + + A R AR+ L H+ LP Sbjct: 737 LIEPPANPLDAANFIPAKTHALSC-----DRRLLQARQCLDDPQGRAPGHAPLGLALPIH 791 Query: 826 -----------FTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 T + +E L+R+ P RA+ + R + + D P L Sbjct: 792 WPPEAPPPPAHATTLNSDQVEQLERWLQAPQRAWLRER-GIEAGEWCDAVEDRAPLALPE 850 Query: 875 LSRYQINQQLLNALVEQDDAE-----------RLFRRFRAAGDLPYGAFGEIFWETQCQE 923 + + + L +++ R + G LP GA G + Q Sbjct: 851 RTLRALITERLRDELDRLKTHPEARWDVTRSGEWIRWSQGRGLLPPGAGGALDDIRLEQR 910 Query: 924 MQQLADRVIACRQPGQSMEID-LACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWL 982 + L + + Q + LA + + G + S L ++ WL Sbjct: 911 WKNLQTTLFSLGSLQQPPRWERLATPPLPMAGETA-------VLISASKLQARSVLEGWL 963 Query: 983 EHLVYCASGGNGESRLFLRKDGE---------WRFPPLAAEQALHYLSQLIEGYREGMSA 1033 +HL+ +G + + R + R+ P+ ++QA LS L EG Sbjct: 964 KHLLNQRAGRAAPTVVICRGESSSKAETFSIAMRWLPMESQQADGLLSDLFALAEEGRRI 1023 Query: 1034 PLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRL 1093 + PESG A ++ A F + G + E + Q Sbjct: 1024 CWPIPPESGLARAVALAKGRDV-----------ADRAFSACWHGGIKRWAERERSDLQAC 1072 Query: 1094 WRQ 1096 + Sbjct: 1073 FGN 1075 >UniRef50_Q6FF17 Exonuclease V, gamma chain n=3 Tax=Acinetobacter RepID=Q6FF17_ACIAD Length = 1221 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 259/1190 (21%), Positives = 492/1190 (41%), Gaps = 141/1190 (11%) Query: 2 LRVYHSNRLDVLEA-LMEFIVERERLD-DPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 + V S R+DVL + + + + R D + +V S + QWL LS+ GI AN Sbjct: 3 IHVIQSQRIDVLLQGVWQSVHQPTRQPFDVLATQHFIVPSPAVEQWLTEKLSELQGITAN 62 Query: 60 IDFPLPAS-FIWDMFVRVLPEIPKE---SAFNKQSMSWKLMTLLPQLL---------ERE 106 F F W + +VL E + + + + W++ L + + Sbjct: 63 YLFHQRIRGFQWYAYQQVLSEHKDDVRKANIPRLILKWRVYQALYDFIQPDQILITQDHP 122 Query: 107 DFTLLRHYLTDDSD------------KRKLFQLSSKAADLFDQYLVYR------------ 142 ++++ + D +D ++ L+ ++ + + LF Y++YR Sbjct: 123 AYSIIAR-IYDSADRLENGFEKQLKKQKMLYWVAEQVSQLFSNYMIYRGHCQKNCAGNCG 181 Query: 143 --PDWLAQWETGHLVE------------------GLGEAQAWQAPLWKALVEYTHQLGQP 182 +WL+ W ++ E +AWQ LW Y HQ Sbjct: 182 CASNWLSAWGENRELDIEQLIVQGNKEISAFQLQQAQELEAWQRWLWHR---YFHQDFLD 238 Query: 183 RWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTN 242 + +L+ + +E ++ LP ++ + + LPP LQ L+ LG+++++ +L N Sbjct: 239 IQNIDDLFWQVLEQPQTRDIALKRLPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILHYN 298 Query: 243 PCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ---LFNSDGEQDVGNPL 299 P + YW D DP + + R ++ E D + L + ++ +PL Sbjct: 299 PSQEYWADSVDPLWKQRYDVRVKQRFIEKNPAATDVDIAQFFEQFTLHFNAEARESRHPL 358 Query: 300 LASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 L GK RD+ LL++L + +E +DAFVD PD LL +QSDIL L Sbjct: 359 LTRLGKQARDHFSLLANLSTGEEGRWVDAFVDDFPDTLLGQVQSDILNLAEPQA------ 412 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT---LTPRDIIVMVA 413 + L+P D SI FHVCHS R++EVL D+L+ L ++ P DI+V+V Sbjct: 413 ------GRYTLEPSDESIRFHVCHSSLRQLEVLRDQLIHWLSQNDDASVRRPNDILVVVP 466 Query: 414 DIDSYSPFIQAVFGSAPADR--YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVL 471 +I P I++VF + P+D +LP IS A + ++L R +D Sbjct: 467 NIKEIEPLIRSVFPATPSDDGVFLPIKISGVVQLDVMNAWRAVLGRMTLLQGRLSYDDFA 526 Query: 472 ALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL--PATGQHTWRFGLT 529 L +P +D+ + ++ + + +G + G D ++++ +++++F L Sbjct: 527 DWLSLPATQVCYDLEDSQIKRMLALLAGAGFKRGFDIHHLQQSLSAEDHDDRYSFKFALD 586 Query: 530 RMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG-----LAQERPL 584 R+ LG A+ +Q VL Y + EL+G L + ++ R + + Sbjct: 587 RLALGIAIP-EHTLFQGVLSYSGVTPDDFELIGKLIQIYQDIDARRNWVLAHEQGTQHSV 645 Query: 585 EEWLPVC-RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD------AVPLSLL 637 E+WL + +D++ + A +I++Q + + A A+PL + Sbjct: 646 EDWLKILMQDVIEFEQAGVVALKTAREIIKKQERMVTLASFYADKDAHTLRQIALPLPYI 705 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 DE+ + L + + +Q G + + +R +P+++V +L ++ G +P + + + FDLM Sbjct: 706 LDEIQRTL-EHQSAQAEPTGQITFSQIGQIRPLPYRLVVMLNLDTGRFPNRDSHIPFDLM 764 Query: 698 -SQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 + + + GDRSR +DD+ FL+A++ AQQ L++ Y G + D R PS ++QE D++ Sbjct: 765 DALRQQLGDRSRLEDDQGAFLDAVLLAQQALWLFYNGFDLNDGEVREPSSILQEFRDHLA 824 Query: 757 QSHYLPGDEALNCDESEARVKAH---------------LTCLHTRMPFDPQNYQP-GERQ 800 P ++ ++S ++ L C+H PFDP + + Sbjct: 825 L-IVAPAEQIAKHEDSNLTIQMQQQQFKLLDIPNQLWPLYCVHPLQPFDPLGFGNLPVAK 883 Query: 801 SYAREWLPAASQAGKAHSEFVQ------PLPFTLPETVPLETLQRFWAHPVRAFFQMRLQ 854 Y +W A +A + P + + P R + + L Sbjct: 884 RYQDQWYQVAQSIQEASAILQPWVNMVYTQPQQELRVLDSQQWMADVTFPARLYLKN-LG 942 Query: 855 VNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE 914 V + + EP L+GL RY I L + + L + LP G Sbjct: 943 VENLAMTTLLDQNEPLFLDGLGRYAIRN-FLQKQEQTTTPDTLLDQ------LPVGKIKH 995 Query: 915 IFWETQCQEMQQLADRV--IACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL 972 W+ E ++L +R+ + + + + + +P+ + S Sbjct: 996 SAWQQSLAEQERLLERLHHYTTQPTATTHHVWRVSKTLHLNIIMPEHDVQDWVSLEASSA 1055 Query: 973 SVAQGMQLWLEHLVYCAS-----GGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 + ++WLE+L++ + G R+ + D +++ QA YL+Q ++ + Sbjct: 1056 RAKRIAKVWLEYLLWLSYLNEGDAGQRRRRIVVFSDQTVICEGVSSIQARDYLTQWLKMW 1115 Query: 1028 REGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEG 1077 + + P+++ L+ D ++K L+ ++ Sbjct: 1116 QVASTQPVVLPAALILQPLEKAKQYHWVQQSDQFQLVEKDLLNILKEWQD 1165 >UniRef50_Q05XZ7 Possible exodeoxyribonuclease V gamma chain n=1 Tax=Synechococcus sp. RS9916 RepID=Q05XZ7_9SYNE Length = 1078 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 267/1151 (23%), Positives = 448/1151 (38%), Gaps = 119/1151 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWL--QMTLSQKFGIAA 58 ML +Y SNR +VL ++ + E ++V + ++WL Q+ L+ GI A Sbjct: 1 MLTLYRSNRSEVLADVLAANLSLHPP-GVLEEAQVVVNTWPTSRWLGEQLALANPSGITA 59 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKE---SAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL 115 N+ FP P S + +L + + Q++ W L+ LLP+LL+ L+H+L Sbjct: 60 NLRFPFPTSLLRHTVDGLLEQQSSGGGADPWRAQNLVWPLLELLPELLDHPASAPLQHWL 119 Query: 116 TDDSD------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLW 169 L+QL+ AD D Y +YRP L W G + G + Sbjct: 120 NTRKSAALEVLDPPLWQLARAIADAIDDYSLYRPAMLEAWLKGQATDARGTPLSPTMLW- 178 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + + ++ I L+ + + G+S+L PV ++ LQA Sbjct: 179 QQQLMQQLHSRLGCLPFGMRARQLIRRLQEGWRPERPPQPPLRLFGLSSLAPVQVELLQA 238 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L I L PC W QR+ S E + + Sbjct: 239 LSCLRSIELYLLTPCPELW---------------QRQSSIESQAPLDEEWLLTVPSVE-- 281 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDILE 344 A +G+LG ++ LL L S + LD F + +LE Sbjct: 282 -----------ARFGRLGAEFQQLLEGSGETQLGSWRALDPFFFPATTASSQGKEPTLLE 330 Query: 345 -LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 L+ V G + R+++ D S+ FH C R+++VL D++L +L D +L Sbjct: 331 QLQEHLVHGTPTDLLPRTED-------DQSLQFHACPGRLRQLQVLRDQILQLLANDDSL 383 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLPD 462 PRDI+VM +++++P + AVFG A LP+ ++DR + + + + LL+L Sbjct: 384 EPRDILVMTPQVEAFAPLVSAVFGDNDATGVRLPWRLTDRSQQSEAGISQGVLQLLALGG 443 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 R + + +L L + + + Q + ++G RWG+D + H Sbjct: 444 ERLTASALETVLANAPLLRAHQLEPDEAEDITQSLQQAGFRWGLDSRDR-----GGDPTH 498 Query: 523 TWRFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 + + + R++LG G ++ P L E G LL QL + L+ Sbjct: 499 SLAWAIDRLVLGVVYPETPGLALENTAPMALPGSL--EQQGRWLGLLRQLQRSLQWLSHS 556 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 R ++ W+ R L A F + + I + + ++ + L Sbjct: 557 RSVQAWVEGLRPQLMALFADGGDWAWELQTIHSVLTDWGEVAGNSSL--ELSAPVVGEVL 614 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 A+RL + +G + I L PMR+IP KV+ L+G++ G +PRQ GF LM Q+ Sbjct: 615 AERLSEGSGRFGHRSGALTISALEPMRAIPHKVLVLMGLDAGAFPRQRQRPGFHLMEQQR 674 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 GD S D DRY+ LEAL+SA+Q L +S+ R + S V++ ID + Q Sbjct: 675 LLGDPSSGDQDRYVLLEALLSARQHLLVSWSCRDERTGEPLEASTPVRQWIDLLPQ---- 730 Query: 762 PGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP----GERQSYAREWLPAASQAGKAH 817 V+ H R F P P +R R+ L A + G A Sbjct: 731 ------------VPVREHAANALERSNFLPSEAWPPASCDQRLLQVRQHLDAGTIGGTAG 778 Query: 818 SEF-VQPLPFTLPETVPL---ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 F + P +PL + L + P + + + L + R ++ + D E L+ Sbjct: 779 LAFSITPHKSPDGPALPLSAWDDLISWVTAPQKQWLEQ-LGLRPREHENAVLDLEDLSLD 837 Query: 874 GLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA 933 R + +Q L E++ R G LP + G + Q L+ + + Sbjct: 838 ERQRSALLRQELGRDQEENAEPDWLALDRGRGQLPPHSAGALEAHQLEQRWTSLSTCLSS 897 Query: 934 CRQPGQSMEIDLACNGVQITGWLPQ--VQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASG 991 + + + V + W + ++ D L+ + Q QLWLE L+ A+G Sbjct: 898 LGEERR--------DAVSMGPWQAELSLRDDQLVLVHTARPRSPQRQQLWLELLLATAAG 949 Query: 992 GNGESRLFLRKDGEW-----RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWL 1046 S + + +DG R P +Q L Q + + PE+G A+ Sbjct: 950 SKLRSAVLVGRDGHRFRVLERISPPTRDQCTALLDQHQAWREQYQQRCWPLPPETGWAFA 1009 Query: 1047 KTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIV 1106 K +K A+EGN ++ GE D Q + P + + Sbjct: 1010 -------------VGEAKGKGWSKARDAWEGNAVLAGERLDAVQQLCFGSDLP-LGDLLT 1055 Query: 1107 EQSQRFLLPLF 1117 + +Q L L Sbjct: 1056 DDAQALALTLH 1066 >UniRef50_D0SSR5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SSR5_ACILW Length = 1234 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 283/1204 (23%), Positives = 478/1204 (39%), Gaps = 165/1204 (13%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFE---PEMILVQSTGMAQWLQMTLSQKFGIAA 58 + V S R+DVL M IV + +PFE +V S + WL +++K GI+A Sbjct: 3 IHVIQSQRIDVLLDSMLRIVNQT-ARNPFEVLQTRHFIVPSPAVETWLTQKIAEKKGISA 61 Query: 59 NIDFPL-PASFIWDMFVRVLP-----EIPKESAFNKQSMSWKLMTLLPQLLEREDFTL-- 110 N F +F W + VL E +E+ + + W++ L + + E L Sbjct: 62 NTQFHHRIRAFQWTSYQWVLNAPKEVEQVREANIPRIIIKWRVFQALRKCILPEQIPLDV 121 Query: 111 ------LRHYLTDDSDKR------------KLFQLSSKAADLFDQYLVYR---------- 142 + + D +D+ L+ ++ + + LF Y+ YR Sbjct: 122 DHPLYSIVKRIYDSADRLEQGTEKQLKKQSMLYWVAEQVSRLFSHYMDYRGYCARNCPPN 181 Query: 143 -----PDWLAQWETGHLVE------------------------GLGEAQAWQAPLWKALV 173 +WL W ++ E +AWQ LW+ + Sbjct: 182 NCSCPSNWLEAWGQDIALDIEQMIYSPKDENGHEMQVADFVKIQARELEAWQRWLWQHVF 241 Query: 174 EYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH 233 + + LY +E E+ LP+++ + + LPP L L+ L ++ Sbjct: 242 QDDY---AKILEIERLYWDRLENAETRAQALKRLPAQIVVFSLLELPPSQLDFLRRLSQY 298 Query: 234 IEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG-------QL 286 I+I++ NP + YW D DP + A+ ++ + E R +A QL Sbjct: 299 IDIYIFHFNPSQEYWADSVDPDWKARFDLQREERFIQRFEKTRQRKPNDAEIKDFRIKQL 358 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDIL 343 + +++ +PLL +GK RD+ LLS L S +E D FVD D LL IQSDIL Sbjct: 359 NFNAEDRESRHPLLTRFGKQARDHFSLLSKLSSGEEGLWADVFVDEYQDRLLAKIQSDIL 418 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML---EED 400 L ++ L P D S+ HVCHS R++EVL ++L+ L E+ Sbjct: 419 YL------------LEPEQHQYALSPDDDSVQIHVCHSSLRQLEVLKEQLIHWLAQGNEE 466 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR------------YLPYAISDRRARQSH 448 P DI+V+ + P I++VF P +R YLP I+ Sbjct: 467 APRQPSDILVLTPSLKELEPAIRSVFAPPPRERETGSKRLQKDNLYLPIQIAGVSRLDVS 526 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 A + + RF ED L + R+ + + + Q + ++G + G+D Sbjct: 527 NAWRAVLGRIQWVRRRFSIEDFADWLSLNATQQRYGLDYSQVERMLQLLTDAGFKRGLDQ 586 Query: 509 DNVRELELPATG--QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS 566 ++++ + +++F L R+ LG A+ +Q L Y + L+ L Sbjct: 587 QHLQQSLSAGDEDYRFSFKFALDRLALGLAIP-EHTLFQDTLSYAKVLTSDFPLISTLIR 645 Query: 567 LLMQLNIWRRGLA-----QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 + L R L Q P++ WL R LN F E+ + I + ++ Sbjct: 646 IYQDLVERRDWLTLHETGQRTPVKTWLEYLRADLNEFRDAGVESLKTVAEIIDKQMRMLT 705 Query: 622 EGLGAQYGDA----------VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIP 671 D +PL + +E+ L+ + + Q G + + +R +P Sbjct: 706 LADYHDQDDPHASQELVALSLPLPYVLEEIQNTLEMQ-LDQAEPTGQITFSQIGQIRPLP 764 Query: 672 FKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRYLFLEALISAQQKLYIS 730 +K+V +L ++ G +P + + FDLM S KP+ GDRSR DD++ FL+AL+ AQ+ L++ Sbjct: 765 YKLVVMLNLDSGKFPSRNQQVPFDLMRSLKPQLGDRSRLDDEQGAFLDALLLAQENLWLF 824 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIG---QSHYLPGDEALNCDESEARVKAH---LTCLH 784 Y G ++D R PS +QEL+ +I QS + D V H L +H Sbjct: 825 YNGFDLEDGEARDPSTALQELVQHIALICQSEQPDAEIDPMVDIHGLSVAQHIRQLYHVH 884 Query: 785 TRMPFDPQNYQPGERQSYAREWLPAA----SQAGKAHSEFVQPLPFTLPETVPL---ETL 837 PFDP + + Y +W A S GK S P + + + + Sbjct: 885 PLQPFDPAGFADMQTPRYQDQWFAVAEYIRSAEGKRSSWINAHYPALEQKEIRVLKGDEW 944 Query: 838 QRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERL 897 R P R F + + V+ EP +L L +YQ+ LL E + L Sbjct: 945 IRDMIFPARLFLKS-VGVSTIRYADLPSSREPLLLNKLEQYQVRDFLLQQEQEIEPNLML 1003 Query: 898 FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLA--CNGVQITGW 955 R LP G + W QE Q L +R++ + + + I Sbjct: 1004 DR-------LPVGKTQQATWLGSQQEQQLLQERLLQLGKELTPVTQQSWQFSPELIIHIN 1056 Query: 956 LPQVQPDG-LLRWRPSLLSVAQGMQLWLEHLVYCA-----SGGNGESRLFLRKDGEWRFP 1009 +PQV L + S S + Q+WLE+L++ A + R+ + + +F Sbjct: 1057 VPQVPNSSYWLSMQSSSASEKRRAQIWLEYLLWLAYLNDDARSPELERIVIFSNKTLKFS 1116 Query: 1010 PLAAEQALHYLSQLIEGYREGMSAPLLVLP----ESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 L++ +A YL ++ + G PL++ + W + + + + L Sbjct: 1117 GLSSSKAHEYLQLWLKAWEIGQQQPLVLPAELLMKKEWQWAENEHGK---MTIVEMPELL 1173 Query: 1066 KART 1069 KA Sbjct: 1174 KAWN 1177 >UniRef50_A3ETY6 Putative exodeoxyribonuclease V, gamma subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY6_9BACT Length = 1095 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 257/1176 (21%), Positives = 456/1176 (38%), Gaps = 152/1176 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML ++ SNR++ L + ++ + P+ P IL Q+ + +WL L+ G+A NI Sbjct: 1 MLVLHVSNRMERLTDQLFSVIRDDPPP-PWSPVTILPQNPTIGRWLTYRLADVQGVAMNI 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 PLP ++I D + F + ++ +L+ +LP L + F+ RHYL + Sbjct: 60 ATPLPGAWIRDFLETGFGRSGQVVHFERNALFLRLLRILPALRDDPVFSEFRHYLGEGDP 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 R+L LS + ++LFD+ ++YRP+WL WE E +W A LW+ + H Sbjct: 120 SRRLVSLSDELSELFDRAMLYRPEWLTSWED------FPEDLSWPAVLWRNVAGKDHPA- 172 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH--IEIHL 238 H A L F + LP R+F+ G+S + P L +G+ ++H Sbjct: 173 ----HFARLLHEFHSLPVLDSLWQEALPDRLFLFGLSGIAPATLDIFFRIGRETSCQVHF 228 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 F NP YW D+ + + D G+P Sbjct: 229 FFLNPTDRYWADMVSLRSWEHMEEELK-------------------------PYFDPGHP 263 Query: 299 LLASWGKLGRDYIYLLSDLESSQE-----LDAFVDVTPDNLLHNIQSDILELENRAVAGV 353 LLA G+ RD L + ++ + F + L +Q + ++ A Sbjct: 264 LLAFLGRTARDLHKKLEEGIRPEDPVADIRECFEEPEGTTTLSRLQRSLFRMDAAAEFLE 323 Query: 354 NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA 413 + P D S+ S REVE L D LL P L D++++ Sbjct: 324 RL-------------PDDGSLRIVSSPSVVREVETLRDFLLDRFLAQPDLRLEDVVILAP 370 Query: 414 DIDSYSPFIQAVF-----GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 + + Y+ I+AVF + L +SDR ++ + + + LL LP Sbjct: 371 ETELYAGTIRAVFEATGESGRAGEPVLSVTVSDRPPFEAA-LADVLVGLLRLPVFPLTLS 429 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 V LL + RF + + L + + +G RWG+D + HT + + Sbjct: 430 FVQRLLSFQTVLDRFSLDRKMASELLEALARAGFRWGVDKQDRTR---DEPEDHTLDWAV 486 Query: 529 TRMLLGYAME-SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 +R+L GY QG V P+ E G L LL WR L+ L W Sbjct: 487 SRILEGYCTGIEEQGLVFPVSPFVLPDDPQGEKAGILFRLLDLFRSWRDRLSGRHALSAW 546 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 +L+ FF+ D + + + + Q + + + + D + ++ + L++R+ + Sbjct: 547 AESVSALLSDFFVLDPDRDRDLFALGQSLRELCRDIHDVEDMDCM---MVTEMLSRRIFR 603 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 RF +G + ++P+RSIPF++VCLLGM + +PR FD + + P+ DRS Sbjct: 604 TTWRDRFFSGGITFGRMVPLRSIPFRIVCLLGMGESAFPRNDVAQSFDFLRESPRPLDRS 663 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 R+DD +LFLE L+SA+ L+ISY+G D + PS V++L++ + + Sbjct: 664 VREDDLHLFLEILLSARSSLWISYVGGEGGDGTTGLPSPPVRQLLETLREPFPPEKKG-- 721 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNY--QPGERQSYAREW----LPAASQAGKAHSEFV 821 L PFDP + + G S++ +++ + S FV Sbjct: 722 ----------QGLFREVPSDPFDPSCFSREAGSWGSFSSSRAGIVRSRSTRTDSSPSFFV 771 Query: 822 QP-----LPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI 871 LP + + L LQ F+ +P + L + E + D EPF+ Sbjct: 772 PKKGRLVLPKGPEDRGSGRRISLSRLQSFYRNPPFYQAKNVLNLAVAGERPLLLDEEPFL 831 Query: 872 LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV 931 L+ +Q++ + P+ G + E Q ++ ++ +R+ Sbjct: 832 LDP------SQEMADPAQN-----------------PWPPVGPLQREQQTRKRRERRERL 868 Query: 932 IACRQPGQ-----SMEIDLACNGVQITGWLPQVQPDGLLRWR--PSLLSVAQGMQLWLEH 984 + + Q + L G + G L + GL+ P L ++++L H Sbjct: 869 LGGFEGLQEDHTETRRFSLGIGGSLLFGTLSLYRETGLIVQDPFPWALRPPDLLRVFLAH 928 Query: 985 LVYCASGGNGESRLFLRKDGEWRF-----PPL----AAEQALHYLSQLIEGYREGMSAPL 1035 L + + L ++ P+ E+A L + YR + Sbjct: 929 LAGSLAFSFYRGTVLLNLAKDFPRTDSTDRPVLWSSEPEEATRLLRPYLVLYRRFRTRTF 988 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQ------------AYEGNMMVRG 1083 +P A+ Q D + A+T + Q +++ Sbjct: 989 PFVPAVSLAYALE-QRNQRGRGPDPRKAIAAAQTAWRQLDPWRTDHGQKNSWKSPFRKDP 1047 Query: 1084 EGDDIWYQRLWRQLTPETMEA--IVEQSQRFLLPLF 1117 + +Y L+ + ++ +Q+ P+ Sbjct: 1048 RRREGFYPHLFFDPEGDWIKDPFFGLLAQKLWNPIL 1083 >UniRef50_A5GU99 Exodeoxyribonuclease V gamma chain n=1 Tax=Synechococcus sp. RCC307 RepID=A5GU99_SYNR3 Length = 1071 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 271/1158 (23%), Positives = 452/1158 (39%), Gaps = 140/1158 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLR+ SN ++ L + ++R + +P P+ +L+ + M++WL + LS++ GI A I Sbjct: 1 MLRLISSNSIEDLATALASELDRHKPANPLTPQRVLISTNAMSRWLALALSERIGICAGI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPK--ESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL--- 115 +F + + + + +P ++ + W+L L+P L + E + L+ Sbjct: 61 EFDFAGRHLRQLILELDGRLPAGHRDPWDPSQLRWQLAQLIPALPQTELWEPLQQLWHQG 120 Query: 116 ---TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQAWQAPL 168 D+ + QL + +D DQY +YRP + +W G V+G L Q WQ L Sbjct: 121 PQQQDNGLDTQRLQLILQLSDTLDQYGLYRPQMVRRWLNGESVDGSHAPLAAHQQWQPAL 180 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL- 227 + L + G P H A +E + L + G+S+LPP + L Sbjct: 181 LRELAQRLEPSGIP--HPAERLLHALEQSRQRSDPHEPL----HVFGLSSLPPALWKLLA 234 Query: 228 -QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 +A + + L +P WG LP E Sbjct: 235 QRASSRDSPVLLYQLSPSLDPWG-----------------------SLPPSHHEEGDALD 271 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLS-------DLESSQELDAFVDVTPDNLLHNIQ 339 G+PLLAS G+ RD+ + L + Q+ A + LL ++ Sbjct: 272 RLERRLLHQGHPLLASLGRTQRDFHWQLELIAADLQEQFERQQRPAPLCPEEAGLLQQLK 331 Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 +D+L R IE L ++ CH +R+VE H+ LL ++ Sbjct: 332 ADLLVGRPRGEGLPGIEP------PLKLQRNQLNLEVLACHGDRRQVEAAHEALLRLMAG 385 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVF---GSAPADRYLPYAISDRRARQSHPVLEAFIS 456 DP++ PR I+VM D+ ++P + AVF G + R+LP ++DR RQ +P ++ Sbjct: 386 DPSIEPRHILVMTPDVARFTPLVLAVFERPGRSSDPRHLPVRVTDRTLRQRNPRVDLVFR 445 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL+L SR +DVL +L +P LA ++ R+ ++++GI WG D D+ + Sbjct: 446 LLALASSRLSRDDVLDVLLLPELAEHLELGGLTQPQWRELLDQAGICWGRDGDHRQSWGY 505 Query: 517 PATGQHTWRFGLTRMLL------GYA-MESAQGEWQSVLPYDESSGLIAELVGHLASLLM 569 PA +WR+GL R+LL G+ E+A GEW + ++S +++ L Sbjct: 506 PAGDAFSWRWGLDRLLLGLELSDGFPEQEAASGEWGGLAACNQSLATANDVLA-LHDACS 564 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYG 629 +L + L+ P E W + D E A + E E G Sbjct: 565 RLFEQLQALSGPLPAERWNEQIGSAIQQLSGGDDEGWQAPEVYELLTPLRDPEASGLALD 624 Query: 630 DAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 A + LL + AQ ++ ++G V++ L PMRSIP +VV LLGM++ PR+ Sbjct: 625 RAAVVRLLEEAEAQ----QQGRYGHVSGAVSLSALEPMRSIPHRVVVLLGMDEQRLPRRD 680 Query: 690 APLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 G+DLM Q+P RGDR RR +DR + LEAL + +Y + ER P+ + Sbjct: 681 QRPGYDLMLQRPWRGDRDRRQEDRAILLEALQACSDHWIATYNAIDPRSGEERNPAAPLS 740 Query: 750 ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPA 809 +L+ + +S+ E + + + Sbjct: 741 DLLRCLERSYRTEAGEPITTWVLQQQPPLPPLT--------------------------- 773 Query: 810 ASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 A + A Q P E LE LQ++ P RA Q ++ E D E Sbjct: 774 AREVVGAPWPMDQRWPVDECEPASLEELQQWLRDPARALLQAH-GIHPHRRGDESSDPEE 832 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRR---FRAAGDLPYGAFGEIFWETQCQEMQQ 926 +GL R+ + Q+LLN E+ +A + ++ G LP G + + Q Sbjct: 833 SAPDGLQRWTLGQRLLNLGSERLEANQWPQQRDALARRGHLPPGPAAIVSSDQPWQRCHA 892 Query: 927 LADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV 986 L + L + ++ S + + WLEHL Sbjct: 893 LLAK----------------------QAELQDADGEAVVLMSNSRFKPKRLLDGWLEHL- 929 Query: 987 YCASGGNGESRLFLR--------KDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVL 1038 A+ + L L + W P + A+QA ++ + E + P+ + Sbjct: 930 -WANAERPQQTLLLGPMEQKGEERAAVWTLPAVEAQQAKAWIDDWQQWREEALQRPIAWI 988 Query: 1039 PESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLT 1098 PE L D + + + + G+ Sbjct: 989 PELNWQLLSQQQDGSLPGLSAQQLKELNPPGRNDYEWPSAWLQLLGGEAPSIASWLEHPE 1048 Query: 1099 PETMEAIVEQSQRFLLPL 1116 E + S R+LLPL Sbjct: 1049 AE------QLSLRWLLPL 1060 >UniRef50_D1R7X4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X4_9CHLA Length = 1144 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 269/1212 (22%), Positives = 481/1212 (39%), Gaps = 182/1212 (15%) Query: 3 RVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDF 62 V+ SN++++L + + ++ PF +I+V S M W+ ++++ GIA + Sbjct: 8 HVFFSNQVELL---IHPLKQQLLGAHPFCRRLIIVPSPAMKSWVMFKMAEESGIAMGFET 64 Query: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLERED---------FTLLRH 113 I ++ + P + + ++ L + Q+L R + + L Sbjct: 65 IYLDQGIQRLYQLIEPNQTLANHPSSFELTLALEVEVRQILMRCESLSSEEHELWKPLFG 124 Query: 114 YLTDDSD--------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQ 165 YL +++L L K A LF +Y + + L W +WQ Sbjct: 125 YLRFSPSIKTLSLKGEKRLISLVEKLAGLFLEYGIAGGEALEAWRQ-------APPSSWQ 177 Query: 166 APLWKALVE----YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPP 221 LWK + E Y ++ ++ ++ I+ L+ V + +S LP Sbjct: 178 VYLWKKIFERGNAYNWTYPYHYLNQISIPEKRIDQLQ------------VHLFAMSYLPA 225 Query: 222 VYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSE 281 +Y LQ + + I + +PC +W D ++ ++ D+ Sbjct: 226 LYHNFLQKIAQAISVSFYLLSPCEAFWSDACSDKESKRMQRYWKKQ-----------DAP 274 Query: 282 NAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLE-----------SSQELDAFVD-V 329 A Q+ + +D NPLLA++G+LGR+ + D + + + + + Sbjct: 275 EAQQVALEELLRD-KNPLLANFGRLGREMAVAVEDSNVRTSACYTLPARALDFPCYEESI 333 Query: 330 TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD--PLDSSITFHVCHSPQREVE 387 T D LLH+ SD L ++ F D+ PLD DS+I H S REV+ Sbjct: 334 TSDILLHS--SDRPYLTLLQAVQTDMVLFRNPDHTPPLDLSENDSTIQIHATPSLLREVQ 391 Query: 388 VLHDRLLAMLEEDPT---LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 +LHD L+ ++ P L+P + +VM DI Y+PFI+ VF + + L Y + D Sbjct: 392 ILHDNLIRLIHNAPKENPLSPNEWVVMAPDIRIYAPFIKMVFSNPNSP--LDYKMMDAEL 449 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 + + +++F+ LL L SR+ + +L L D ++ + E + +R W+ E+GIRW Sbjct: 450 PEQNLYIQSFLHLLKLSSSRWDTVSLLTLFDYLPFRNKWGLHFEDIDQIRTWIKETGIRW 509 Query: 505 GIDDDNVR---------ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSG 555 G+D + + + TW G +L G +E +L D + Sbjct: 510 GMDIAHRQMILKQDHCAHTLVDENPAGTWEHGFQMLLKGLILEENDT----ILSVDITQS 565 Query: 556 LIAELVGHLASLLMQLNIWRRGLA--QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIE 613 L+G ++ L+ L ER ++EW + + N + LP E L+E Sbjct: 566 T---LLGKWIYIVRSLHQDLIPLNDGSERTIQEWGTYLQHLSNFYLLP--ELSEHQELLE 620 Query: 614 QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPF 672 L ++ L +E +S R + V C+++PMR+IP Sbjct: 621 HLLHPFFKGFLP---QHTFSFKTIQPILLSLFKKEDVSYRETSLRAVKFCSMLPMRAIPA 677 Query: 673 KVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR-GDRSRRDDDRYLFLEALISAQQKLYISY 731 K + LLG+ +G +PR L L++ P+ S+ D DRYLFLE L SA++ L +SY Sbjct: 678 KGIALLGLEEGAFPRFLPESSLHLLAFHPQADYSPSQIDFDRYLFLETLTSAREYLLLSY 737 Query: 732 IGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDP 791 S E+ PS+LVQEL+ Y+ +S+ L + H ++P Sbjct: 738 QAFS-STGKEQPPSLLVQELMSYLDKSYRL----------GDTCPSKRCFFKHPFHGYNP 786 Query: 792 QNYQPGERQSYAREWLPAASQAGKAHSE-----------FVQPLPFTLPETVPLETLQRF 840 Q + S+++E +A + K PL + + L Sbjct: 787 QYFDNSSLNSFSQENYRSALASLKTEKTSKHCFIPKFLSLRTPLCLEEEHILEIRQLIAL 846 Query: 841 WAHPVRAFFQMRLQVNFRTEDS-EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFR 899 +P +F RL + E+S +IPD + F L LS+ + ++ L + + L Sbjct: 847 ARNPFEHYFNKRLGIYLEKEESRKIPDDDLFSLTSLSKASLKKEAL-----KHPLDALLT 901 Query: 900 RFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC----------------RQPGQ---- 939 + G LP+G F + + +E++Q ++ C +P Q Sbjct: 902 QNEIKGRLPFGYFKALSLDQLKKEIEQNKSLLLNCGIALDQIFQIELTDAVSEPTQIHPA 961 Query: 940 -----SMEIDLACNG-VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVY-CASGG 992 +E+ + ++I G LP+V P GLL + + ++ W +L+ C + Sbjct: 962 CWLLPPLELTYQVDKRIKIVGILPEVTPQGLLAFI--RDEKKEVIKAWPAYLILNCLANV 1019 Query: 993 NGE---SRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTC 1049 + L K G + P +Q L ++ Y + +LPE W+ Sbjct: 1020 YPDMFGKHLIFAKSGSIKAPFF--DQPFTLLEHFLDYYFICQTHVSPLLPE----WIPDM 1073 Query: 1050 YDAQNDAMLDDDSTLQKARTKFLQAYEG--NMMVRGEGDDIWYQRLWRQLTPETMEAIVE 1107 + L +QK+ T Y N M RG+ D + + E Sbjct: 1074 IENPKSCQLK----IQKSLTGHFSLYNDYVNWMTRGDVDLDYVSLV---------SEWQE 1120 Query: 1108 QSQRFLLPLFRF 1119 + + P++ Sbjct: 1121 LATAYFSPIYTH 1132 >UniRef50_Q6MFB7 Putative exodeoxyribonuclease V gamma chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB7_PARUW Length = 1195 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 270/1164 (23%), Positives = 466/1164 (40%), Gaps = 179/1164 (15%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAAN 59 L V+ SN+L +L ++ + + PF+ +++V M WL + ++Q GIAA Sbjct: 38 LEVFFSNQLSILYEQLKNNLFGFK-QTPFKKRLVIVYGPAMQTWLTLKMAQDPDLGIAAG 96 Query: 60 IDFPLPAS------FIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLL-----EREDF 108 I+F + + +P I + S ++ +L+T+L E++D+ Sbjct: 97 IEFLYLNQAFETLIHYFQLKNEKIPSILELSL----AIEKELLTVLQDYHRLSDEEQQDW 152 Query: 109 TLLRHYLTDDSDK------------RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVE 156 L +YL +S + ++L LS A +F +Y Y +++WE Sbjct: 153 LTLIYYLKLNSKQVGENLKLTRKMEKRLTGLSYHLAKIFQEYGKYAYSLVSKWEK----- 207 Query: 157 GLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGI 216 E + WQ+ LWK+L G W +A F +TL+ C V I Sbjct: 208 --SEHRGWQSRLWKSLF--GGNQGWTYWTKA-----FQKTLKFFPECE------VHFFSI 252 Query: 217 SALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL 276 S + Q L L I+ +PC +W DI+ L T ++ Sbjct: 253 SFISKAEFQFLSKLANVAPIYYYLLSPCAVFWSDIRSDNETRYLQTYWQQ---------- 302 Query: 277 FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQEL------------- 323 + A Q+ + NPLLA++GKLGR+ Y + + +++ Sbjct: 303 -KLGSKASQVLQLEELLRDRNPLLANFGKLGREMAYQIEESQATTHAGYILPSHVSELND 361 Query: 324 ------DAFVD--VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSIT 375 D F+ + P LLH IQ+DIL + N G F R D SI Sbjct: 362 EIFFQEDLFLKESLQPLTLLHAIQADILMMRNP--EGKPPFNFERK---------DDSIQ 410 Query: 376 FHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYL 435 H+ S +RE+++L+ LL + E+D TL P DIIVM I Y P+IQ+VFG + L Sbjct: 411 LHIAPSIRREIQILYHNLLKLFEKDSTLQPNDIIVMAPQISDYVPYIQSVFGLEESQ--L 468 Query: 436 PYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQ 495 + I D + +++ F L+ L +SR+ ++L L + +T+ +++ Sbjct: 469 DFQILDLGMQAQSEIVQGFFQLIRLSESRWEVSELLQLFGHRLFQRCHQLTQSDYYLIQE 528 Query: 496 WVNESGIRWGIDDDNVREL---------ELPATGQHTWRF--GLTRMLLGYAMESAQGEW 544 W+ ++GIRWG D + EL + ++ TW F + L ++SA Sbjct: 529 WIQQAGIRWGEDWLHRNELLQRHHCEKEMVDSSSVGTWNFGLTRLLLGLTTVVKSADSHS 588 Query: 545 QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL--AQERPLEEWLPVCRDMLNAFFLPD 602 +P + AEL+ LL L L + +EEW +L+ +F + Sbjct: 589 FDSIPCEGIDFSQAELMERWIRLLHSLRDDLSPLHDRSQMCMEEWSCYLSCLLDTYFKCE 648 Query: 603 AETEAAMTLIEQQWQAIIAEGLGAQYGDAV--PLSLLRDELAQRLDQERISQR-FLAGPV 659 E ++ E+ G A+ ++ L L Q I+ R + Sbjct: 649 FEDSQSIADYEELKSQFKLLGDSAKTFKETKFSFQTIKFHLNNLLQQRGITYRESHLQTI 708 Query: 660 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRYLFLE 718 C++MP+RSIP KV+ +LGM +G +PR +LM Q + + D DRYLFLE Sbjct: 709 RFCSMMPLRSIPAKVIAVLGMQEGAFPRAGYHTSLNLMVGQDNLDYNPNSTDYDRYLFLE 768 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 AL S +SY G + QD+ PS++++E Y+ + + + ++ Sbjct: 769 ALQSVTDVFIVSYQGYTYQDSKVLQPSLIIEEFFTYLDKYYLIQN----------KKISE 818 Query: 779 HLTCLHTRMPFDPQNYQPGE-RQSYAREWLPAASQAGKAHSEFVQPL-------PFTLPE 830 H FD ++P +Y++ A Q + H L ++L + Sbjct: 819 QCVSKHPFDAFDVSYFKPNSILNNYSQFDYRIAEQYYQTHKTPSHRLLKQFILSNYSLED 878 Query: 831 ------TVPLETLQRFWAHPVRAFFQMRLQVNFR-TEDSEIPDTEPFILEGLSRYQINQQ 883 + L+TL PV+ + L + ED I + E L L++YQ+ Q Sbjct: 879 ILPSHTVIDLKTLNTLVRSPVKFYLNRGLDIYLEGYEDRIIKNQEELGLSALNKYQLKQF 938 Query: 884 LLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV------------ 931 L ++ E++ + G LP G F + + E+ ++ R+ Sbjct: 939 AL-----KEPFEKVMQIADKEGKLPLGMFKTVATKRFKDEIDEVHQRLYKHGINPSELFQ 993 Query: 932 ----IACRQPGQ---------SMEIDLACN-GVQITGWLPQVQPDGLLRWRPSLLSVAQG 977 +C +P Q +++++ + + I G LP V GL+ + Sbjct: 994 IEFCTSCSEPCQIQKDQWLLPALQLNYSDQYQISIIGKLPFVSKKGLVVLSQGS-GFSDA 1052 Query: 978 MQLWLEHLVYCASG----GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSA 1033 + W + L++ + E L L K E + + ++ YL LI Y M Sbjct: 1053 WKAWPQFLLFNYATTFNIEAIERNLILSKSSEVK--KAFFKDSIPYLKHLINYYALSMRN 1110 Query: 1034 PLLVLPESGGAWLKTCYDAQNDAM 1057 + P W+ + + A+ Sbjct: 1111 FSPLFP----DWIPSLIEGDEQAI 1130 >UniRef50_A5EWC3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWC3_DICNV Length = 1090 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 250/1128 (22%), Positives = 431/1128 (38%), Gaps = 145/1128 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M R+ + L L + DD F I+V S +A +L+ +++K GI+ Sbjct: 1 MFRITQATDLAHLMPDFLTALHDYP-DDIFAETEIVVPSMAIADYLEHHIAEKMGISCRH 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLL----PQLLEREDF--TLLRHY 114 + W + R+ ++ + ++ W+L + L ++L ED L HY Sbjct: 60 RYRFWGEMEWTIIERLSNRSAAQTPLSTTAIHWQLFSWLYAHRAEILADEDHVLAPLLHY 119 Query: 115 L------TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL------VEGLGEAQ 162 L D+ +L+Q S + A LF YL RPDWL W+ + L E Sbjct: 120 LLAPSSARDEQTLPRLWQFSGEQAQLFTHYLKMRPDWLLTWQQKPDCHLEDIIATLPEMP 179 Query: 163 AW-----------QAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRV 211 W Q LW+ L + HR ++F L P LP+R+ Sbjct: 180 TWLRQHYDGVFTVQKYLWQQLFA------EAMEHRQQRIEQFYHRLSVDDALPA-LPARL 232 Query: 212 FICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFED 271 F+ +L L LQA G+ E+HL Y+ DI D + Sbjct: 233 FVFHPFSLTDHMLHWLQAFGQRCEVHLWLALVSNGYFPDIVDERWRQS------------ 280 Query: 272 RELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSD---LESSQELDAF-V 327 N+D G+ L++ +GK RD L LE Q + Sbjct: 281 --------------HTNADEHFRSGHVLVSRFGKQQRDIFRLCQSHNLLEEIQHITPHSA 326 Query: 328 DVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVE 387 D +LL +Q+D+ L++++ S PL P D SI H CH R++E Sbjct: 327 DTAQQSLLQRLQADMRALDDQS-----------SLTAAPLVPNDDSIRIHGCHGLLRQLE 375 Query: 388 VLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAISDRRAR 445 +L + L+ L D T DI++++ +++S I+ VF ++ LP ++ Sbjct: 376 LLREELVRWLNADETRQLSDILIVLPELESVQDVIRTVFPASGDYDGAVLPARLTGIIDS 435 Query: 446 QSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWG 505 + + +A + L + F L + + + I ++ ++ + +G G Sbjct: 436 SAQRLWQAISGIYVLATTPFNRHTFLQWVLQEEVCTAYGIADKAMQRTCDQLIAAGFYRG 495 Query: 506 IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA 565 + ++ + + T + L R+L G AM A ++++P A + LA Sbjct: 496 FEQQDLETV-ADGDARFTLSYALERLLSGLAMPQADIWLENIVPEHNIRNDDAAALAVLA 554 Query: 566 SLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA---- 621 + Q++ R + WL R L F +T AA LI Q + Sbjct: 555 QIHQQISTIRVQQKNHTTAQFWLDELRQRLEHDFSAF-QTTAAWQLIAQTLTELTEKLQA 613 Query: 622 --EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLG 679 + A +PL + + + ++L +++ +G + I + MR++P++++ +G Sbjct: 614 HHQLTAAAADLYLPLPFILNYIGEQLSTRQVASE-PSGVITIGRIGAMRALPYRLIAFVG 672 Query: 680 MNDGVYPRQLAPLGFDLMS-QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQD 738 + +P ++A +L++ P+ GD R D+ FL AL SA + Y D Sbjct: 673 ADQEQFPHRIAEQRHNLLTIDAPRLGDYHREHDELGSFLHALSSAGSHFWCFYTAVDPND 732 Query: 739 NSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE 798 + ER P+ VQEL+DY+ Q+ D+ L H H PF + Y Sbjct: 733 HEERLPAAPVQELLDYLAQNGV---DQYL-----------HYHLRHQPNPFHREPY---- 774 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFT-------LPETVPLETLQRFWAHPVRAFFQM 851 R + A W ++ + + LP + +T+ L + R P R F + Sbjct: 775 RTAPAPLWQKVQHHLQQSAPDVLPFLPESETFTVNQAEKTMLLSQIARDLLKPARTFLRA 834 Query: 852 RLQVNFRTEDSEIPDTEPFIL----EGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDL 907 +++ D EP + +GL R+QI Q LLN F+ L Sbjct: 835 H-KIDCSVTDVATDILEPLVFDAQSDGLKRWQIYQALLNDSPH----------FQYLPFL 883 Query: 908 PYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGV---QITGWLPQVQPDGL 964 P GA G + Q Q ++ ++ C ++ + L QI+ LP V+ + Sbjct: 884 PAGAAGHHYHLLQNQRIEAQRAQLFECTGERENTPLQLKTVSFSNGQISADLPAVEVNKW 943 Query: 965 LRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG---EWRFPPLAAEQALHYLS 1021 + SV WL +L++C G GE L + +RF PL E A L Sbjct: 944 VSLSARRYSVRSIFSEWLHYLLWCVQTGGGERWLSFAEKEMSVVYRFLPLECETAERELK 1003 Query: 1022 QLIEGY---REGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQK 1066 + + + PL AW + + + L K Sbjct: 1004 NWLAIWSRLDSILGMPL------EIAWEIAVAQKEKNPEKAVEQWLNK 1045 >UniRef50_A2BX92 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=7 Tax=Prochlorococcus marinus RepID=A2BX92_PROM5 Length = 1060 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 177/1152 (15%), Positives = 412/1152 (35%), Gaps = 131/1152 (11%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPE--MILVQSTGMAQWLQMTLSQKFGIAA 58 ML +Y+SN+++V+ L+ + + P E I V + + +WL ++ I+A Sbjct: 1 MLNIYNSNKIEVISQLLAKELI---ISPPLITEKLDIAVPNYFLGKWLWNEITVSNQISA 57 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 + +++ + + PEI +N +S+ W ++ +L ++ +R+++ Sbjct: 58 LYELKTISNYTETLLTNLFPEIDM-GVWNFESIKWGIIDSFEELDSYKESLPIRNWINKF 116 Query: 119 SDKRKL-----FQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAWQAPL 168 + +K+ + L+ K A+ F YL++RP+ ++ W + +L L + WQ L Sbjct: 117 LNNKKIIDGDIYNLTKKIANNFIDYLIFRPEMISNWHKYDLNSQNLFNNLNSNEYWQPIL 176 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 +K L Q P I+ ++ +P ++I + L +++ Sbjct: 177 FKLL-----QKKMPEKPSCLYMIEVIKNIKKLQNYKNKIPKCIYIISDNNLSRLHVDFYS 231 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 L + +++L + W I F EN L N Sbjct: 232 KLAEFTKVNLYLLSVGDNLWNRINS-----------------IEGEVDFGGIENKLYLNN 274 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDA-----FVDVTPDNLLHNIQSDIL 343 + E +GK G +Y L+ + + ++++ ++D T ++ I Sbjct: 275 ASIEGI--------FGKFGANYQKLIEETSNIEDINLNTKSIYIDPTINSSRKKDVPLIN 326 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 +++ R + ++ D SI F + ++E + ++++ +LE + Sbjct: 327 QIQKRLID--------NKKYDFIINERDDSIIFRGHFNQLSQLEFVRNKIIEILETCEEI 378 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPD 462 DI ++ PF++ +F + + + LPY + S + +++ L Sbjct: 379 KYSDIAIVSPQTGLIKPFLKYIFNNELINGQKLPYFFIEGDYEDSSNIYNFLLNITQLAG 438 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 + E + L F+ + + +N+ G WG+D + ++ Sbjct: 439 EKITLEKIEYFLSQDFTQNIFNFDMKEKEEIILLLNQVGFHWGLDSNERL-----GEEKN 493 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 + + + R++LG + + L + +L +L++L + L Sbjct: 494 SLEWCINRIILGLIYDKEFNFINNNLKSFSPKNISLDL-NKWVKILIKLKEYINLLRGSF 552 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 W+ + +LN + + I ++ + + Q + L++ R+ L Sbjct: 553 SYSVWVKKIKYILND---VNDFHQNFYLEICDLYRVMNNYSISYQSDQIIVLNVFREILI 609 Query: 643 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 ++ + + + + +R IP + L+ MN+ YPR +++++K Sbjct: 610 SCINNSKYKNESYINKILVSDIEKIRLIPRNTIFLINMNNVYYPRLTIKENINILNKKYS 669 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 GD S D ++Y FLE LIS +++L +S++ +DN + S ++ELI+Y Sbjct: 670 LGDPSVFDREKYFFLELLISCRKQLIVSWVNND-KDNKKLDISYPIKELINYF------- 721 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQ 822 E+ + + + +D Q + E ++ + + + Sbjct: 722 --ESFLTIKQRKSIIKYFD-------YDKQQFSKTEENTFTSHYTLIDKIDWEEKKFDCK 772 Query: 823 PLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQ 882 L L ++ P + ++ + PD E + Q+ Sbjct: 773 NFK--------LSELIYWFKTPQLYWLNKN-NISPKGIFIHHPDDEYVT--NFQKSQLVN 821 Query: 883 QLLNAL-------VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR 935 L+ + +++ + +F G + + + + + + Sbjct: 822 NLIQKIEIDNHNCIDELKNLNIREQFIENGIIAP---KKSIFSKEKEIKDLVLSLATNLS 878 Query: 936 QPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGE 995 Q + N ++ ++ L+ S L++ + + W++ L + Sbjct: 879 QNNNIDRTYIKSNSNKLEYFIAGEVVIELIH---SKLTLKRLSEAWIKLLFISSLDKKIA 935 Query: 996 SRLFLRKDGEWR----FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYD 1051 + + A L + I ++ L + PES +++ Sbjct: 936 KTKVIFRKENLYKSEILQSPDPYYARKILEEYINIFKNFSEKCLPLPPESTYKYVEAKMQ 995 Query: 1052 AQNDAMLDDDSTLQKARTKFLQAYEGNM-MVRGEGDDIWYQRLWRQLTPETM----EAIV 1106 ++N+ + F + GN +GE D+ Q + + Sbjct: 996 SKNE------------KKAFSDRWIGNKSFTKGERDNTEIQLCFGNKKEPNFFFENDKFD 1043 Query: 1107 EQSQRFLLPLFR 1118 + S R PLF Sbjct: 1044 DLSLRLYAPLFE 1055 >UniRef50_Q4FSM9 Possible exoribodeoxynuclease V, gamma subunit n=3 Tax=Psychrobacter RepID=Q4FSM9_PSYA2 Length = 1512 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 208/990 (21%), Positives = 360/990 (36%), Gaps = 228/990 (23%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDP-FEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 M + S+R + L + +V+ + + P FEP +++V S + WL T++ + GI+ Sbjct: 1 MFTIIQSHRTENLVDQL--LVQYQSKNQPVFEPFIVIVPSMVLGDWLDKTIASRAGISTL 58 Query: 60 IDFPLPASFIWDMFVRVLPE----------------IPKESAFNKQSMSWKLMTLL---P 100 + + W + VL +P+ + + M W+L L Sbjct: 59 VRTKFWGQYQWTLMQDVLTRHNAYLLEIDPEAAILNVPEVAVLSPTVMQWRLFGYLTYYQ 118 Query: 101 QLLEREDFTLLRHYLT-------------DDSDKRKLFQLSSKAADLFDQYLVYRPDWLA 147 L+ +++ + L +++QL+S A +F++YL +R DWLA Sbjct: 119 ALIVKDETHPVNPLLASLIDEPKEGGEQDKAQQDARIWQLASDLARVFNRYLTHREDWLA 178 Query: 148 QWETGHL----------------------------VEGLGEAQAWQAPLWKALVEYTHQL 179 W VE E + Q LW L HQ Sbjct: 179 LWSHNKPLNVDELIADKDALSLRFDKYARGTPDWLVEHYVELEVAQRFLWSHLFADVHQ- 237 Query: 180 GQPRWHRANLYQRFIETLESATTCPPG-LPSRVFICGISALPPVYLQALQALGKHIEIHL 238 HR + F L+ LP + I I LP L LQ L ++++I L Sbjct: 238 -----HRVTIENTFWSALKDNKANERAQLPKILRIFTIQQLPQTELDFLQRLSQYMDITL 292 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 L NP + +W DI D ++L + S +D G+ Sbjct: 293 LHYNPSKLFWADIVDKSWLQRQQI----------------------INPESVFLRDYGHS 330 Query: 299 LLASWGKLGRDYIYLLSDLESSQELD-----------------------AFVDVTPD--- 332 LL+ GK RD +L++L +++ +F D D Sbjct: 331 LLSRLGKQSRDTFAMLANLSGNEQYQDELVEWQDNFENSDDGLNDDFGFSFDDSAYDVDD 390 Query: 333 -----------NLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDP------------ 369 +LL +Q+D+L L+ ++ V S++ +K+ Sbjct: 391 ANNSQITQNSPSLLRRLQNDVLMLDEQSTQQVTAATVSQAVSKQIEPSFDKEKPEMAWYE 450 Query: 370 -------------------LDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP----- 405 D+S++ H CHS QR++EVL + L E + P Sbjct: 451 DEALENKRFERERFWVSSWQDNSLSIHSCHSLQRQLEVLRIMIGRWLNE--PIKPGEKKR 508 Query: 406 --RDIIVMVADIDSYSPFIQAVF--GSAPADRYLPYAIS---DRRARQSHPVLEAFISLL 458 DI+V++ D++ + I ++F G LP ++ D RQ + F LL Sbjct: 509 HISDIVVLLPDVERHHALISSIFVSGKGQDGLTLPAKVTGVVDADIRQLWEAIIGFYKLL 568 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL--EL 516 +RF + +VL L +P L F +T E + + E+G G D+ ++++ Sbjct: 569 GSHSARFEAPEVLDWLMLPPLFESFGLTHEQMSRGCDLLVEAGFIRGFDELHLKQTLDSN 628 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQ----------------GEWQSVLPYDESSGLIAEL 560 + ++ L R+ LG M A + LP + S A + Sbjct: 629 DFDYRFSFAQALDRLTLGLVMPEASLSDCLYPLAQDDWPSTTLPEMSLPLPQVSLNDAMI 688 Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQ--- 617 V L + L R Q+ E+WL + + D + M I Sbjct: 689 VEALCRIYAGLVARRDDHRQKMKAEDWLDQIETEVIHRYFGDVDQTRTMRAIYNAMNGFK 748 Query: 618 -AIIAEGLGAQYGD------------------AVPLSLLRDELAQRLDQERISQRFLAGP 658 ++ A QY + LS + D + L+ +++S G Sbjct: 749 SSLRANRHYKQYSSADSANKEVEQKLAGVEQLPLKLSFMLDSIESELESQQVSAE-PTGV 807 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRYLFL 717 + +R++PF++V +L MN +P + +DLM + +RGDR DDD FL Sbjct: 808 ITFGRFGALRNVPFELVVMLNMNLSEFPGRERDNRYDLMKATNARRGDRVSEDDDNGAFL 867 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG-------QSHYLPGDEALNCD 770 +AL+ A+ ++ Y G+S+ D E P+ + EL+ ++ S Sbjct: 868 DALLCARSACWMFYNGQSLTDTHEHLPANPISELLQFLQGEIQWQVNSLETLPKNIDPTT 927 Query: 771 ESEAR-----VKAHLTCLHTRMPFDPQNYQ 795 ES R +K L H +PF ++ Sbjct: 928 ESLKRYLPKLIKQWLVTEHPALPFHESLFE 957 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 842 AHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 HP +AF + + +V+ + I EP L+ L+ YQI + L+N L Sbjct: 1123 RHPAKAFLRTQ-KVHVVQGEEAIAHQEPLFLDSLTTYQIKEHLINELATDA 1172 Score = 44.9 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 70/226 (30%), Gaps = 28/226 (12%) Query: 919 TQCQEMQQLADRVIACRQPGQ-SMEIDLACNGVQITGWLP--QVQPDGLLRWRPSLLSVA 975 + +L + I + S+ +D + + + + P L P+ S Sbjct: 1280 KNNDSLLKLLPKAIKIKGSVPISVPVDAHNSRSHLQAGVSYAEQSPKQWLNILPNSASPR 1339 Query: 976 QGMQLWLEHLVYCASGGNGESRLFLRKDGE--------------------WRFPPLAAEQ 1015 ++ WL HL + + + DG ++ P+ E Sbjct: 1340 HLLKFWLSHLYWQVARRTTAEQA-ASNDGVSIWRFNKPSSQIKKYEKVTAFKLSPIVYED 1398 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA--RTKFLQ 1073 A+ L + + P+ +LPE ++L C A+ ++A Sbjct: 1399 AVVELIKWAVFAKLSGQVPITLLPEYALSYLDKCLQAEESGDEIGSYWPKRADFSDWLRP 1458 Query: 1074 AYEGNMMVRGEGDDIWYQRLWRQLT--PETMEAIVEQSQRFLLPLF 1117 +Y + + +Q + R A+ +Q P+F Sbjct: 1459 SYYSDTIYDTCSQHAIWQYVLRDQDAFKALSAALSTLAQPLYEPMF 1504 >UniRef50_D0LXX8 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LXX8_HALO1 Length = 1274 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 209/862 (24%), Positives = 343/862 (39%), Gaps = 113/862 (13%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEM--ILVQSTGMAQWLQMTLSQKFGIA 57 MLR+ +SN + L AL + + R P I+V + + ++++ ++ + G+A Sbjct: 1 MLRLTYSNHFEELCRALCQELAAERRRRRQLLPATAHIVVPNHHITAYVKLAVANQLGVA 60 Query: 58 ANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHYL 115 AN+DF +SFI + V E + + L+++L LL ++ + YL Sbjct: 61 ANLDFRFISSFIAEC---VPDERRDLRVLDTPHLHALLLSVLADEALLAEDELAPVAAYL 117 Query: 116 -----TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL--GEAQAWQAPL 168 D+ + FQL+ + A LF Y + R D L W G + + WQ L Sbjct: 118 GAAGGEQDAVDLRRFQLAQQLATLFSDYRLSRGDLLRAWREGPALGDTRSAATEIWQRRL 177 Query: 169 WKALVEYTHQLGQPRWHRANLYQ-RFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 W A+ + L ++ E + +P V + G S LP + + L Sbjct: 178 WLAIFDAERGLLARIREETGVHWVHGPELFDEYLIKDLAVPRSVHLIGFSYLPWAHHKVL 237 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 + L + I +H+ NPC +W D++ + +L RQ + D F D ++ Sbjct: 238 ERLSRFISVHVYAFNPCMEFWEDLR-AGWETRLAGRQLKSRKGDAVQLSFEDLDD----- 291 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV------------------ 329 P L WG+ GR+ + +L + FVD Sbjct: 292 ---------TPALRLWGRPGRENVRILDEQTQCDFDARFVDPAAPEAEDAAAADAADAAS 342 Query: 330 -----------------------TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRP 366 P +LL +Q DIL AG + + Sbjct: 343 SAESQAAAPDLFAGLGLGAAAAEPPVSLLAALQRDILFRHPARRAG--------APDAPA 394 Query: 367 LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV--ADIDSYSPFIQA 424 L D S+ C S QRE+E++ + + +++ DP L DI ++V AD + Y + Sbjct: 395 LVAGDRSVQILGCPSIQRELEIIGNEIWSLMARDPGLRFNDIALLVGRADQELYQAHVPG 454 Query: 425 VFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF- 483 VF +PY +D ++EA LL LP RF ++L LL P + AR+ Sbjct: 455 VFAELHG---IPYHFADAAVTGESRMVEALGLLLDLPFGRFTRPELLRLLTHPAVLARYP 511 Query: 484 DITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE 543 D+ + W GI G D + + W+ G+ R+ LG M + Sbjct: 512 DVDPDD---WVHWSERLGIVHGADTRDHAATYI-ERDLFNWQQGIRRLALGAFMAGERSG 567 Query: 544 WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL--------AQERPLEEWLPVCRDML 595 D S+ L EL L + + R L E+PL W M+ Sbjct: 568 ELRPFAMDGSAYLPEELPADLLPSAARFALVARSLIADARYCQQAEKPLARWRIFFDLMV 627 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ-ERISQRF 654 +++ P + + + +AI G V + + L RL + Sbjct: 628 DSYLAPQNDEDE--RNLAACREAIATLAGSDIDGRPVRYRIACELLRARLGKLRGERGEL 685 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 LA V + L+PMR IP++VV L G+ +G +P DL + K +RGD S R+ DRY Sbjct: 686 LAHGVTVAPLLPMRPIPYRVVFLAGLGEGHFPASERESPLDLRAAKRRRGDVSPRERDRY 745 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLE L+SA+++LY+SY+ R + PS +V EL D++ +S Y E + Sbjct: 746 LFLETLLSARERLYLSYVSRDERTGETLQPSPVVLEL-DHLVRSGYTGEGEGTS------ 798 Query: 775 RVKAHLTCLHTRMPFDPQNYQP 796 + H +DP+ + Sbjct: 799 -----IAIDHPLRRYDPRYFPA 815 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 74/248 (29%), Gaps = 55/248 (22%) Query: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD-TEPFILE-----GLSRYQINQQL 884 + L L+RF P++A+ L++ D + E F GL + L Sbjct: 944 PISLRMLRRFLETPLQAWAAAVLRLRESELDDPVAQADESFSTPVAPMVGLLSDVFGEHL 1003 Query: 885 ------LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG 938 L AL E+ + G P G F +I E +Q+ + Sbjct: 1004 SAGAPSLEALSER--YAERAQYLELTGRSPTGVFSDIDSERHLAILQRWQAHIETLAPGP 1061 Query: 939 QSMEIDLACN-------------------------------GVQITGWLPQVQPD----G 963 + L+ V++ G V D Sbjct: 1062 REPASVLSFGRAPETRDAGLLLPPLALPISLPDGEGGQRVVRVELVGSTSPVFADPALGA 1121 Query: 964 LLRWRPSLLSVAQGMQLWLEH-LVYCASGGNGESRLF-----LRKDGEWRFPPLAAEQAL 1017 ++ ++ +L+H + A + +R + G + P +A A Sbjct: 1122 VVTSYTDKERPRDRIRGFLDHAVAIAAECEDAAARTLSVVTSGKHCGRYALAPWSAVDAR 1181 Query: 1018 HYLSQLIE 1025 YLS+L+ Sbjct: 1182 AYLSELVR 1189 >UniRef50_C9RQA7 Exodeoxyribonuclease V RecC subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQA7_FIBSS Length = 1256 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 230/1139 (20%), Positives = 402/1139 (35%), Gaps = 192/1139 (16%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML + + L+ L M V +PFE ++ + QW ++ QK Sbjct: 14 MLYLKFALNLENLADKMIDAVSDA-WTNPFEAPAVIFPDPKLEQWFRLKWVQKKK----- 67 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMT--LLPQLLEREDFTL-------- 110 F M R L EI +KQ + +++ +L L++ D Sbjct: 68 ---SLIGFKSMMIDRFLMEILIGDDTHKQKLHAEMLRNVILAHLVKETDGVPNYMRMDDE 124 Query: 111 LRHYLTDD--SDKRKLFQLSSKAADLFDQYLVYRPD-------------WLAQWETGHLV 155 ++ YL D D+ LF +SK A LF +Y RP L +W+ HL Sbjct: 125 VKRYLVIDRTLDETHLFDFASKMASLFLEYETSRPKDFIRRADGSSAPGILEKWKQDHLD 184 Query: 156 EGLG-------EAQAWQAPLWKAL-----------------------VEYTHQLGQPRWH 185 + G + +AWQ L+ A+ +E T L P + Sbjct: 185 DFFGIANHDIAKREAWQRELYSAIFHEHQGKPSLLTEVFENEAKRKGIERTEYLTIPYLY 244 Query: 186 RANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCR 245 +A + T + L FI G+ + Y LQ + +++ NPC Sbjct: 245 KACQDDKGNVTFHTEHIGNTPL----FIFGLGGMGQFYRVILQKYAETHDVYAYIQNPCM 300 Query: 246 YYWGDIKDPAYLAKLLTRQRRH----------SFEDRELPLFRDSENAGQLFNSD----- 290 +W D + R + S +D + D NAG+ + D Sbjct: 301 EFWEDTSTVHDQNANIHRNWKSRDGQWKDNGTSLDDVREKMSVDYSNAGESTDVDDISEY 360 Query: 291 --GEQDVGNPLLASWGKLGRDYIYLLSD--------LESSQELDAFV--DVTPDNLLHNI 338 E + N LL +WG+ GRD I L S +E D D+ D LLH + Sbjct: 361 SNEEAEAENTLLCNWGRSGRDNIKLWCQAVNYDFDFSMSGREDDNRTAQDLPQDTLLHKV 420 Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 Q I N + F+ SD K D S+ + RE+E LH + +++ Sbjct: 421 QYAIANRIN------TLPNFTASDCK----ARDFSLDITAAPTKIREIEALHTNISKLMQ 470 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR------------YLPYAISDRRARQ 446 + + DI+V+ +D Y I+ +F P + ++P+AI D AR Sbjct: 471 KGARV--NDILVVSPALDDYRTAIKTIFDQTPEKKKYAGENEKEGFLHIPFAIVDSPARS 528 Query: 447 S--HPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 S VL+ ++L LL PV+ IT+E + W+ + I Sbjct: 529 SLTENVLDNLFTILE--QGTITRPTFFELLRNPVVQLTRHITDEDVSNWESWIEATNIYR 586 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS-VLPYDESSGLIAELVGH 563 D + +E W G+ R+LL ++ LPY + + + Sbjct: 587 --DREQKKE---------DWMSGVRRLLLAKMTKNPVEFSDGEFLPYADMATSDNSSLCK 635 Query: 564 LASLLMQLNIW------RRGLAQERPLEEWLPVCRDM-------LNAFFLPDAETEAAMT 610 + L W ++ + E E + + L+ PD + Sbjct: 636 FVECIESLKKWMEFAGCKQNVKHEIVCENRIENLDKLCDFINEWLSMASSPDGFASERI- 694 Query: 611 LIEQQWQAIIAEGLGAQYG---DAVPLSLLRDELAQRLDQERIS-QRFLAGPVNICTLMP 666 ++ Q+I EGL Q ++ +++ L S + +P Sbjct: 695 IVNDVTQSI--EGLRNQMDAGLQSISWKVVKQTLLNAAQSSAYSCGSLFVNGITFMNFIP 752 Query: 667 MRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRYLFLEALISAQQ 725 R IP K + +G + +P DL S +P GD S RY FL L+S + Sbjct: 753 NRIIPVKHLFFIGGDSMNFPGAKQQNTLDLRKSCRPWPGDDSPIAKRRYAFLCQLMSTSE 812 Query: 726 KLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL-NCDESEARVKAHLTCLH 784 +ISY+ + I+ ++E +P+ +V ++ ++ + D + +S+A + ++ Sbjct: 813 SFHISYVNQDIRKDAELYPTSVVNDIRKFLVNAVNSKTDVSNEKVSQSDAWPENKISLDE 872 Query: 785 TRMPFDPQNYQPGERQSYA-----REWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQR 839 TR F+ Q R A ++ A+ A + LP+ V + L Sbjct: 873 TR-SFEDLFTQKSLRNKRAFLNMMQDGYAHANPETDAIESASNNITAKLPDRVSIYMLSS 931 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDT---EPFILEGLSRYQINQQLLNALVEQ--DDA 894 F P FQ R+ DSE P+ EP L+ L + + + L A + D+ Sbjct: 932 FLKDP----FQFRISQMLADSDSEDPEKEMFEPVQLDALKKSTLLKMTLAAELSNKSDEL 987 Query: 895 ERLFRRFRAAGDLPYGAFGEIFWETQCQEM--------QQLADRVIA---CRQPGQSMEI 943 E+ + + G P G FG+ + + L ++ + + ++ Sbjct: 988 EKFKKESKLKGGTPDGIFGDKLSSEIEENKKIIMDNMGEALVKKIKESWCYQAKIEDIQF 1047 Query: 944 DLA-CNGVQITGWLPQVQPDGL--------LRWRPSLLSVAQGMQLWLEHLVYCASGGN 993 + + ++G L L + ++ + ++ L A N Sbjct: 1048 ERSDSEKWTLSGSLDWSDSSDLGKITEMISITSSNKKPTIDNFLTPYIRALAVIAQRSN 1106 >UniRef50_C8NCI0 Exoribodeoxynuclease V, gamma subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI0_9GAMM Length = 1251 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 191/884 (21%), Positives = 336/884 (38%), Gaps = 89/884 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M R+ S L A + DP ++V + + L TL+ + GIAA I Sbjct: 1 MYRLIESTDYPALLARYLQDYDHYSRADPLGDTPLIVPTLPVGNILIQTLASQRGIAAGI 60 Query: 61 DFPLPASFIWDMFVRVLPEI--PKESAFNKQSMSWKLMTLLPQL-------LEREDFTLL 111 L ++ W + R+ + ++ ++ W+L + L Q LL Sbjct: 61 TLRLWHNYEWMLVERITGKSRSSSQAPLGNTAIRWELFSYLYQHGNTILADPGHPQHALL 120 Query: 112 RHYLTDDSDK------RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL--VEGLGEAQA 163 R L D+DK R+L+ S + A+L+ YL RP+WL+ W+ ++ L + + Sbjct: 121 RG-LYPDTDKITHDHTRRLWVYSGQLANLYSTYLNQRPEWLSAWQNADPPPLDALLKNDS 179 Query: 164 WQ------APLWKALVEYTHQLGQPRW-----HRANLYQRFIETLESATTCPPGLPSRVF 212 Q A ++AL + +L R+ R + F +TL++ + LP + Sbjct: 180 LQQLPPQIADHYRALYQQQSRLWHDRFAAIHAERERRRETFWQTLKTRESARRLLPPYIP 239 Query: 213 ICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDR 272 + + L ++ LG + ++ Y DI D +L +L R Sbjct: 240 VFAPTHLHAAEHDFMRRLGNYTDLTHYHLAASDGYIDDIVDSRWLRELKARAAGK----- 294 Query: 273 ELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPD 332 S ++ G+ LL+ +GK RD LL + L A P Sbjct: 295 ---------------PSGEHREHGHELLSRYGKQQRDLSRLLHADSDPEPLPA-TPAPPH 338 Query: 333 NLLHNIQSDILELENRAVAGVNIE-----------------EFSRSDNKRPLDPLDSSIT 375 NLL +Q++I EL+ VA E + N P D S+ Sbjct: 339 NLLTALQAEIRELKEDHVAACLAATTLPPSLQSGGRTGRGCENRAATNPDHQTPQDHSLR 398 Query: 376 FHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF---GSAPAD 432 H CHS QR+ E L ++A L DP+ DI + + D + ++A F G + Sbjct: 399 IHGCHSLQRQCETLRSDIVAWLNADPSRRLSDIYIHLPDPAAAQTTLRATFPPGGDYDGN 458 Query: 433 RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRY 492 R LP + + + + +L + RF + VL L I E ++ Sbjct: 459 R-LPARLIGVTENPAENLWRSLAGRYTLINGRFDAPTVLDWLHNEDTCHSLGINSEHMQR 517 Query: 493 LRQWVNESGIRWGIDDDNVRELELPATGQH--TWRFGLTRMLLGYAMESAQGEWQSVLPY 550 + + +G R G D +++ H T+ + L R++ G A ++ +P Sbjct: 518 ITAALVAAGYRRGYDGAHLQPTLHTEDHDHRYTYTYALNRLIAGVLTPDAD-HYREAVPQ 576 Query: 551 DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMT 610 + + LA+L ++ R A+ P + WL R L+ + A A Sbjct: 577 HGLTLADLPALEALATLAENMHTLRALQAENTPAQNWLQHLRATLHDAYTH-AHNSPAWQ 635 Query: 611 LIEQQWQAIIAEGLGAQYGDA------VPLSLLRDELAQRLDQERISQRFLAGPVNICTL 664 ++Q + + Q +PL + + + +L ++ S +G + I +L Sbjct: 636 TLDQALDDLQNQLAAHQALAPQNEQHYLPLEFILENIENQLADQQNSSE-PSGVITIGSL 694 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRSRRDDDRYLFLEALISA 723 +R++P K+ L + YP + ++L+ KP+ GD +R +D L+ + A Sbjct: 695 KNLRNLPGKLHIFLNADHDRYPARQNDERYNLIHLDKPRPGDNNREHEDLGALLDLINRA 754 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDE--ALNCDESEARVKAHLT 781 L++ Y S DN + P+ VQEL+ Y+ H A ++ + H Sbjct: 755 GDALWLYY--NSHHDNEPQPPASPVQELLQYLDDQHERASQHLRASGRLDAGQTLPRHYH 812 Query: 782 CLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLP 825 H PF P R + E + Q + P P Sbjct: 813 TEHPADPFQPD--AHETRPAPLWENIRTTLQQNTPTATETSPPP 854 Score = 98.9 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 64/301 (21%), Positives = 96/301 (31%), Gaps = 23/301 (7%) Query: 791 PQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQ 850 P + + + + +LP A Q PE + L + R P A+ + Sbjct: 931 PHAWLSNSQPAPQKTFLPLHIPPALAADAAPQN-----PENLTLAQIVRDLQKPASAYAR 985 Query: 851 MRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD-DAERLFRRFRAAGDLPY 909 + + EP L GL +Q +Q ++ AL + D R A P Sbjct: 986 AH-HIANTAAQTPPESREPLALYGLDNWQADQHIIAALEQNHPDPATHIARLPA---YPG 1041 Query: 910 GAFGEIFWET----QCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLL 965 G G+I E Q L DR P + +T LP P Sbjct: 1042 GISGQIQLEQRLATYRARQQTLLDRADLATWPTLREQTLNLGEHSSLTALLPAHSP-TWP 1100 Query: 966 RWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 R S + WLEHL + A+G +G + + D R PL A A L Q + Sbjct: 1101 RLSASRAKPKHHARYWLEHLAWNATGAHGTTLIHYADDTLLRLAPLPAADAQRQLHQWLA 1160 Query: 1026 GYREGMSAPLLVLPESGGAWLKTCYDAQN--------DAMLDDDSTLQKARTKFLQAYEG 1077 L E +L+T + + DDS + + G Sbjct: 1161 VREHLQKNLWLAPLELMQPYLETFTTDKAADKQAALVRDWIHDDSHKNDDGDLWRHLWRG 1220 Query: 1078 N 1078 N Sbjct: 1221 N 1221 >UniRef50_Q057F6 Exodeoxyribonuclease V, g chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F6_BUCCC Length = 1042 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 150/785 (19%), Positives = 358/785 (45%), Gaps = 35/785 (4%) Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 L +++DIL ++ + ++K+ ++ D+SI+ + C S EV+++++ + Sbjct: 282 LSYLKNDIL-----------KKKIYKINSKKKININDNSISINQCKSYIHEVQIVNNYIH 330 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 LE + + DI++ ++ID Y P+IQ +F ++ L + + + +L Sbjct: 331 KTLETNKKIKLDDILITASNIDIYIPYIQKIFN-FSQNKNLLIKKTGKEEEKKKEILLTI 389 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 LL++ ++ F +L+LL++ +L +F I ++ L + ++ I +G + + +E Sbjct: 390 KDLLNIKNNYFKPFWILSLLNIKILRKKFSIKNRDIKTLGKLISHLNIAFGFNKKHYKEF 449 Query: 515 ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 +P ++W + + R+ G+ + + ++ Y+ S+ L+G+ + + QLN Sbjct: 450 SIPDLKTYSWEYAIKRITSGFIFNNKNTIYNNIYTYNISNDKKNILLGNFINFIKQLNKL 509 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 R+ + +++ +E+W+ + ++ FF + + + L++ W+ I G+ + + + Sbjct: 510 RKKIYKKKKIEKWINIISIIIKNFFYIEKKDKKFFFLLKNIWKKNIFYGIKINFLKKISI 569 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 +E + +FL+G + + L + IPFKV+C+LG Sbjct: 570 EFFINEFFKNHSLLYKKNQFLSGNIKLINLNKINLIPFKVICILGCTQEKISLFNNQDIL 629 Query: 695 DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 +L+ +K K + +FL+ + ++ L++SYI + N +PS + ++I Y Sbjct: 630 NLIEKKNKNNEN--------IFLKTIFLTKKYLFLSYIKNNYIQNK-YYPSKFILDIIFY 680 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAG 814 I + Y + + + + + + +++ + + Sbjct: 681 IKNNFYYFKKKEKKKIQKKNFLNKIYKKNKNNIINS--LFSKEKKKIIKTKKNQKKYKKI 738 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFR-TEDSEIPDTEPFILE 873 + + + FW +P+ FF+ L+VN + E++ + E F ++ Sbjct: 739 NITIQKKIKIKKLIN----------FWKNPIEYFFKNTLKVNIKNYEENMFIEDEYFSIK 788 Query: 874 GLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA 933 L++Y+IN +L ++ + + F+ LP +I W + +++ L++++ Sbjct: 789 PLNKYKINSLILKNMLLNKKTDYHIKEFQLKNKLPQEKIAKILWYEKIKKINILSNQIKK 848 Query: 934 CRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN 993 R+ +++ I ++G + +V L++W + + + W++H++YCA Sbjct: 849 IRKFPKNIHIYYKFKKYYLSGKIKEVNKLNLIQWNVNKIKFKDIITTWIQHIIYCAFEKP 908 Query: 994 GESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQ 1053 +S L + + F + + A YL + I+G+ +G P+L+L SG WL T + + Sbjct: 909 KKSILLSTNNKKIEFLSIKKKIAKKYLKKYIQGFIDGHKKPILIL-NSGIHWLHTIFLKK 967 Query: 1054 NDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFL 1113 + + + L A+ FL+ + G+ GE +I+ +++ L ++ I + ++ Sbjct: 968 ENVLKINKYNLNLAKKNFLKIWNGSNFFLGEKKNIFIKKIIPILNKNLIKKICNSCKYWI 1027 Query: 1114 LPLFR 1118 LP+F+ Sbjct: 1028 LPIFK 1032 Score = 89.2 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 81/179 (45%), Gaps = 9/179 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y SN+++ L + + ++ E+ L+++ + +WL++ ++ K I NI Sbjct: 1 MLKIYQSNKINFLLKKICKKIYIKKKKKILINEIFLIENKYVQKWLELYIANKKKINFNI 60 Query: 61 DFPLPASFI-WDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 F L F+ + + K F K+ + W ++ ++ D + L+ Y Sbjct: 61 KFILLFRFLNNFFKKNNIKKNKKLIIFEKKYLQWIIILIIYNTY---DCSFLKKY----G 113 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQW-ETGHLVEGLGEAQAWQAPLWKALVEYTH 177 + K F+ S A++F QY+ ++P + +W + + WQ LW +++ Sbjct: 114 IQYKNFEFCSHIANIFIQYIYFQPHLIYEWENNKKSKKKEKKTYQWQKKLWNLIIKKIK 172 >UniRef50_A7BX05 Exodeoxyribonuclease V gamma chain n=1 Tax=Beggiatoa sp. PS RepID=A7BX05_9GAMM Length = 458 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 143/473 (30%), Positives = 242/473 (51%), Gaps = 38/473 (8%) Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISA 723 + PMRSIPFKV+CLLGMND YPR LGFDL+++ PK GDRSRR +DRYLFLE+L+SA Sbjct: 1 MRPMRSIPFKVLCLLGMNDQTYPRPSKSLGFDLITKHPKPGDRSRRQNDRYLFLESLLSA 60 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCL 783 + YISY+G SI DN+ PSVLV EL+DYIG++ P + ++ Sbjct: 61 RDYFYISYVGHSIHDNTVMPPSVLVSELLDYIGKAFISPH----------QNLLDNIIIH 110 Query: 784 HTRMPFDPQNYQPGERQ--SYAREWLPAAS----QAGKAHSEFVQPLPFTLPE----TVP 833 H F P+ + ++ S++ E+ A+S + A + LP PE T+ Sbjct: 111 HPLQAFSPRYFNETDKHLFSFSDEYCHASSVLLNERQLAKDFIAESLPPPQPEANWKTLD 170 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 + RF+ +P RL + ++E + ++EPF + GL RY++NQ L+ +E D Sbjct: 171 INRFARFFKNPSEFLLTERLGIKLQSETHLLGESEPFEVRGLERYKLNQTLVEKSLEGVD 230 Query: 894 AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR---QPGQSMEIDLACNGV 950 + +A+G LP+G G+ + ++Q +RV + +++ ++L + + Sbjct: 231 LHEYHKIAKASGQLPHGGIGDYAYSKLVGQIQPFVERVQQATTRQKKRETVLVNLTIDDM 290 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN--GESRLFLRKDGEWRF 1008 +ITG+L ++ D L+ +R + L +QLW+ HLV + L + ++G W F Sbjct: 291 RITGYLGRLWHDNLVHYRCAKLKATDFIQLWIHHLVLNSLPEQKLPRHSLLIGEEGSWEF 350 Query: 1009 PPLAAEQALHYLSQLIE-GYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 P+ +++ L L++ Y +G+ PL P+S A+++ + + ++A Sbjct: 351 KPV--NESIVILETLLKAYYWQGLMQPLSFFPQSSLAFVEQLTTGKTE---------EEA 399 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLFRF 1119 ++ + GN GE D+ +YQ + + T +++F P+ Sbjct: 400 FSRAQNTWRGNDFANGEFDNDYYQLCFGKETSPLDNGEFKILAKQFFEPMLAH 452 >UniRef50_Q6A851 Exodeoxyribonuclease V gamma chain n=3 Tax=Propionibacterium acnes RepID=Q6A851_PROAC Length = 1049 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 144/748 (19%), Positives = 256/748 (34%), Gaps = 89/748 (11%) Query: 373 SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV---------------ADIDS 417 ++ H CH R+ EV+ D + A L + PTL PRDI+V+ ADID Sbjct: 289 TVEIHQCHGVDRQAEVVRDVVCAALADYPTLEPRDIVVICCGRQDTAHLLSAGTLADID- 347 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 P Q F + P ++ +PV EA ++L L SR +D+L+L +P Sbjct: 348 -HPAHQLRFTTPPQREHV------------NPVTEAVTTILGLASSRATGQDLLSLCAMP 394 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + RF +++ + + V+++ IRWG+D + L Q TW G+ RM+L AM Sbjct: 395 AVQTRFGFSDDDQEAIERLVSQADIRWGVDPAARDKAGLGRIKQSTWLAGIERMILAIAM 454 Query: 538 ESAQGEWQS-VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 S + V P + LVG LA + ++ P+ W +++ Sbjct: 455 SSTPPTYLGTVTPITDVGSTTIPLVGKLAEFVSRMRKAFLDTETPAPIATWKRRVSQIVD 514 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 A+ + Q A++ G + D L R + Sbjct: 515 NLAAAPADAPRSAL----QTLALLTGLEGVAEDREFDRQEIIDLLNWLSGIHRGRHSWFD 570 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLF 716 G + +C + + +VV ++ + A L L + ++R+D Sbjct: 571 GSIQVCRPGELTPVDHEVVIVVDPDQEA---VHADLLQGLRDENLDPAAKARQD-----L 622 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 L+ +SA+ L + RS N P + L + P Sbjct: 623 LDVALSARTLLVVVRQARSPVSNLTVLPGPFTRTLSQALKAQSATP-------------- 668 Query: 777 KAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAG-------KAHSEFVQPLPFTLP 829 H PF + +++ AA+ AG + H + P+ Sbjct: 669 ---RCVKHGLQPFSADEFSHHSDTAWSGFDNTAAAAAGCHPGSQPRPHRVVLPPVAKLPE 725 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 + L L +HP R + R +++P P L +Y I ++L L Sbjct: 726 SRMSLIDLTLALSHPARTLLRARAGAPANERSTDLPVDLPLAPSSLDKYWIRSRILADLE 785 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR--QPGQSMEIDLAC 947 + R G P G G+ ++ Q+ R R Q Q +EID Sbjct: 786 HGFLLDDAINAERLRGSTPPGHLGQHIVTKLAEDAMQICQRANRLRGDQDEQFIEIDFDL 845 Query: 948 NG-------------------VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYC 988 + V + G + V+ ++ S + + LW++ L Sbjct: 846 DEGNSPPLLWPDELIVDPMHPVHLHGRV-GVRNHQIVHAVASRANARPLLDLWVDLLAVT 904 Query: 989 -ASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLK 1047 A+ G + + R A + A L+ L + + + A ++ Sbjct: 905 VATDEPGWFGVLVPNGDVLRMASPAPDHARDILAGLARVAWWSNQQLIPLPVKLAHALVE 964 Query: 1048 TCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A ND + + ++ + Sbjct: 965 LSPMAHNDYRTGASALQVQWSREWDPNW 992 Score = 83.1 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 23 RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPK 82 E DPF +++ ++ L +L+++ GIAA ID P + +L + Sbjct: 23 SEPTTDPFVRPILVAPGNAQSRSLLQSLARRHGIAAGIDTTTPLGLRERLEEDLLGVKRE 82 Query: 83 ESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK---RKLFQLSSKAADLFDQYL 139 + S++ ++ ++ F ++ +L + R + + +AAD Sbjct: 83 NDPWQPGSLALRICRVIEN--NSPGFEVVSAHLEASRRQGVPRATWTTARQAADAIC--A 138 Query: 140 VYR--PDWLAQWETGHLV-----------EGLGEAQAWQAPLWKALVEYTHQLGQPRWHR 186 + R D L W G + L A+AW APLW+ L+ + P Sbjct: 139 LARDSHDVLNAWADGATPTTHQGDTDLAGDPLDPARAWWAPLWRTLLAEPCHVPDP---- 194 Query: 187 ANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 + +Q ++ + + + P + + + +AL ++ ++ Sbjct: 195 VSRHQLLVDAILTQSRSEPP----IVWFSSTTTAQHDVSLAEALSASHDVTIVHL 245 >UniRef50_C8PVF1 Putative exoribodeoxynuclease V, gamma subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVF1_9GAMM Length = 1524 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 122/573 (21%), Positives = 227/573 (39%), Gaps = 80/573 (13%) Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE------------E 399 + ++ + RP PLD+SI HVCHS R++EVL ++ L Sbjct: 498 QESNKQLENVEKWRP-KPLDTSIAIHVCHSMVRQLEVLRSMIIGWLNYSDMQATPAQIPT 556 Query: 400 DP--TLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEAF- 454 DP DI+V++ DI+++ I+A F LP ++ A+ + + +A Sbjct: 557 DPWDRRALSDILVLLPDIETHQNIIEATFPKHVGGDGYQLPAKVTGVVAKDINLLWQAIT 616 Query: 455 --ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVR 512 +LL+ +RF +V L + L F + E + + ++G G D+ +++ Sbjct: 617 GYYTLLNRAGARFQRSEVFDWLMLAPLYESFGLNLEQMTRACDLLTQAGFIRGFDELHLQ 676 Query: 513 ELELPATG--QHTWRFGLTRMLLGYAMESAQ-----------GEWQSVLPYDESSGLIAE 559 + A ++T+ + L R++ G M A G + +P + A+ Sbjct: 677 QTLSAADDDYRYTFAYALERLVAGVMMPKATVVSFGEYTNSFGVVEKFVPLTNLTMADAD 736 Query: 560 LVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEA------AMTLIE 613 +V L + L+ R + L +WL ++ F +T A A ++ Sbjct: 737 IVAVLCDIYETLDDNRHLGNDVKTLPDWLTQIEKLIQQKFSLFNQTNAWRAIFAAQNDLK 796 Query: 614 QQWQAIIAEGLGAQ-------------------YGDAVPLSLLRDELAQRLDQERISQRF 654 + +A + + L+ + + +AQ + +++S Sbjct: 797 ENIEANSKYLATVKIKTAKNPNPATEPVQQIDTENLPLKLTFVLENIAQSIINQQVSAE- 855 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK-PKRGDRSRRDDDR 713 +G + + +RS+P+K+V +L +N +P+Q ++LM P RGDR R DDD Sbjct: 856 PSGVITFARIGSVRSLPYKLVVMLNLNLSEFPKQEQQNRYNLMQAGLPIRGDRFREDDDL 915 Query: 714 YLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP----------- 762 FL+AL+ A+Q +I Y G+S D E P+ VQEL+D++ Sbjct: 916 GAFLDALLCAKQACWIFYNGKSTTDTHEHLPASPVQELLDFLQNRMASDDVIIDPNNDQN 975 Query: 763 -------GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGK 815 E VKA+L H +PFD ++ + + + Sbjct: 976 SLSNNSQNPPNPQSTNFEQWVKAYLVTHHAALPFDKSYFELPQTEHKDKGIQSPEQINDD 1035 Query: 816 AHSEFVQPLPFTLPETVPLETLQRFWAHPVRAF 848 S +Q +L + + L + P + + Sbjct: 1036 RVSADLQQTTASLNQQIKLS--KTALYPPAKIW 1066 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 94/457 (20%), Positives = 166/457 (36%), Gaps = 128/457 (28%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN++D L + L+ FEP ++V S M +WL+ ++ K GI+ Sbjct: 1 MLTIIQSNKVDKLFDHLLNAYKNPSYQGSIFEPFQVIVPSKVMGEWLKKQVADKAGISTL 60 Query: 60 IDFPLPASFIWDMFVRVLP------------EIPKESAFNKQSMSWKLMTLL-------- 99 + + + RVL ++P+ + +K M W++ L Sbjct: 61 VTTEFWGRYFLGLMQRVLRTYARISEDDDILDVPEVAMLSKNVMQWQIFGYLTQYRQAIV 120 Query: 100 --------------------------------PQLLEREDFTLLRHYLTDD--------- 118 P +++ + + L++D Sbjct: 121 EQPQHPLYPFLSPLVEDKEADSPNTTGFAPDTPAIVDSLSWANNQSLLSNDVISQSADLQ 180 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV----------------------- 155 + ++++QL+S A++ ++Y+ YRP WL+ W V Sbjct: 181 TQDQRIWQLASDMANMLNRYMTYRPQWLSNWGQDKPVAVSDMIAKKDALHNRLNGRDASN 240 Query: 156 ---------EGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESAT----- 201 E + +A Q LW+ L + R L+ +F + L + Sbjct: 241 AIDTPDWLVEHYEQLEAAQRFLWRQLFDD------DYRFREQLHNQFWQALNHSDTRIRN 294 Query: 202 TCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLL 261 LP VF+ + LPP L LQ LG ++ +L NP +W DI D +L ++ Sbjct: 295 ISRSKLPKHVFLFTLQQLPPTELLDLQRLGVLTDVTILHFNPSEQFWADIVDKNWLMQMQ 354 Query: 262 TRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ 321 E+ ++ +D G+ LL+ +GK R+ +L+ L ++ Sbjct: 355 M------------------EDDASKHDAWYLKDYGHTLLSRFGKQSREVFAMLASLSGNE 396 Query: 322 EL-----DAFVDVTPDNLLHNIQSDILELENRAVAGV 353 D F + P+ LL IQ DIL LE A Sbjct: 397 YEHVLWQDDFDNTPPNTLLEFIQHDILMLEEVATTAK 433 Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 17/166 (10%) Query: 964 LLRWRPSLLSVAQGMQLWLEHLVY---------CASGGNGESRLFLRKDGEWRFPPLAAE 1014 L + P+ +Q WL HL + A +G S P + E Sbjct: 1356 WLNYLPTSGKEKYLLQFWLHHLCWQVLRRTTAQQAQLNDGFSLWQFSNKKTVYLPAIPCE 1415 Query: 1015 QALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQA 1074 QA YL ++ Y+ S ++ P A+ + Q ++ + +L+ Sbjct: 1416 QACGYLQDIVMVYQLIDSVVTILPP----AFCLSFLQKQ---QKQPEAPASQHLGDWLKD 1468 Query: 1075 YEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLL-PLFRF 1119 N + + D +Q L P + + + P+ Sbjct: 1469 SNFNFVDVNQFDYPIWQHLIGDYKPSVVIGFAQTLGALIYEPMLSM 1514 >UniRef50_C1RHS2 Exonuclease V gamma subunit n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RHS2_9CELL Length = 543 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 123/508 (24%), Positives = 201/508 (39%), Gaps = 30/508 (5%) Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 L A+ A + + A A + L + L RL F G Sbjct: 1 MLLTAADPTDAWQEVGARAVLADARASAAGADVPLRLPDVVALLEPRLGGRPTRAGFRTG 60 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 + +C+L PMR++P +VVCLLG++DG +PR AP G D++++ P G+R RR +DR LFL Sbjct: 61 ALTVCSLEPMRAVPHRVVCLLGLDDGAFPRAGAPDGDDVLARDPLVGERDRRAEDRQLFL 120 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 +A+ +A L + + G + + R P+V V EL+D + ++ + Sbjct: 121 DAVTAAGDHLVVVHSGADERTGAPRPPAVPVGELLDAVDEAVAFA---------DGRTSR 171 Query: 778 AHLTCLHTRMPFDPQNYQPGER-----QSYAREWLPAASQAGKAHS----EFVQPLPFTL 828 L H D +N+ PG S+ AA+ A PLP Sbjct: 172 GALVVHHPLQTVDERNFAPGALGRPGPFSFDVVDRDAATVARGPRHPRPPLLTAPLPPLD 231 Query: 829 PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 V L+ L HPVRAF + RL V E ++ D P L L + +LL A+ Sbjct: 232 DPVVDLDDLVAALEHPVRAFVRRRLGVLVPGEVDDLDDRLPLTLAPLDGWAAGDRLLAAV 291 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFW-ETQCQEMQQLADRVIACRQPGQSMEIDLAC 947 ++ D R R G +P G G + + P ++++ + Sbjct: 292 LDGVDLTRAAAAERRRGRVPPGNLGGAALADVATRVAAVAEAAAPVLGAPATTVDVTVPL 351 Query: 948 NGVQ-ITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR---LFLRKD 1003 G + +TG +P V D L+R + L ++ W+ L A R R Sbjct: 352 PGDRTLTGTVPGVHGDVLVRAVYARLGAKHRLRAWVRLLALAADPDGPPVRGAATVGRGP 411 Query: 1004 GEWR------FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAM 1057 G P + A L++L+ + APL + + G + + + A Sbjct: 412 GTRPTAATSWLTPPEPDDARRLLAELVTVRDRALCAPLPLPVAAAGTYAHRRHGNDDPAG 471 Query: 1058 LDDDSTLQKARTKFLQAYEGNMMVRGEG 1085 D Q R ++ E +++ G+G Sbjct: 472 ALAD-AEQALRDRYEHTDEYHVLAWGDG 498 >UniRef50_Q04UR0 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Leptospira RepID=Q04UR0_LEPBJ Length = 1131 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 148/843 (17%), Positives = 303/843 (35%), Gaps = 122/843 (14%) Query: 369 PLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGS 428 D+S+ F SP RE+E + +L + +D LT D ++V D+ Y P ++ VF Sbjct: 318 SQDASVRFWNAPSPYREMESAANDILYRINQDHRLTYLDFAILVTDMRVYRPAVEWVFDG 377 Query: 429 A----------PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR-FVSEDVLALLDVP 477 P + +PY+++D +A ++ + + + +L L P Sbjct: 378 GILLQTKADADPIRKKIPYSLTDIKANEASLLYRGLMDFWEICSGNSIDKRSLLKFLRNP 437 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 +L + E L L + ++ SG+++ ++ GL R+ L + Sbjct: 438 LLHSNIRSNSESLSILEKLIDTSGVQYEESGREKDSFQI--------SNGLKRIRLSSIL 489 Query: 538 ESAQGEWQ-SVLPY----DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 + + P DE S L+ + + + G R ++L R Sbjct: 490 SQETAWTKYKIAPIFLESDEHSFLLTNFWETVLKAKNDILSFSEG-KTIRWTPDYLKTVR 548 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ-YGDAVPLSLLRDELAQRLDQERIS 651 L F + E L + W + E G + + +SLL+ Q DQ Sbjct: 549 ASLEELFEFPGKYEQEGKLFQN-WSESLLEWEGIRLHNKEEGISLLKFVTEQTFDQIPYR 607 Query: 652 QR-FLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD 710 + +L G V I L PMR +PFK + +LG+ +G +P +L + D S R+ Sbjct: 608 KGAYLTGGVTISLLQPMRPLPFKHIYILGLGEGKFPGSNDRSQLNLRKDFREEWDISHRE 667 Query: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 L E + SA++ L +SY+G+++Q++ P + E+++ + Sbjct: 668 IQESLLWETIHSAKESLTLSYVGKNLQEDKTFEPCSHLFEIMESL--------------- 712 Query: 771 ESEARVKAHLTCLHTRMPFDPQNYQPG-ERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 + + V+ L + + + G + R W+ F P Sbjct: 713 QIKKAVELPLHSYSIKYKHTSEELKQGLVSYDFGRVWVNGNRNDYTILDRFQNPKELAKT 772 Query: 830 ETVPLE------TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQ 883 + PL L +F + P+ + + +L + E+S + E F L+ ++ I ++ Sbjct: 773 SSTPLSSGIDVKELSQFLSDPLDTYLKRKLGMYLEEEESSDYEKEIFDLDAIAETSILRK 832 Query: 884 --------LLNALVEQDDAERLFRRF-------RAAGDLPYGAFGEIFWETQCQEMQQLA 928 L++ D E++ + R++ P FG+I + + + Sbjct: 833 VHALMVPDLVSKESWSWDREKILQVLSPILEMERSSAKFPRSVFGKIQETDLVRYLVTTS 892 Query: 929 DRVIACRQ------------------------PGQSMEIDLACNGVQITG-WLPQVQPDG 963 + + + +++ L I G W ++ DG Sbjct: 893 ENLFEWKPIFQGGTYYPYLSLGDTGLSDSICKKMPELKVPLESGRFSIKGEWEHVIEKDG 952 Query: 964 LLRWRPSLLSVAQGMQLWLEHL-VYCASGGNGESRLFLRKD----GEWRFPPLAAEQAL- 1017 L W S + + +L + + + + + F P +E++ Sbjct: 953 NLYWLFSKSLEEKPSEDYLGYKDYWRTMSFPFLTGVAFASSNENFKVYSFKPRPSEESKK 1012 Query: 1018 -----------------HYLSQLIEGYREGMSAPLLVLPESGGA--WLKTCYDAQNDAML 1058 YL++++ Y + + P+ P +LK + L Sbjct: 1013 KNTLTLEYRIGSPSIGIEYLAKILMEYLK--TEPV-FFPRKAFLNYYLKNIQGDSKNKTL 1069 Query: 1059 DDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 DD + A +FL+ E N + G +L+ + +++ ++ ++ F P Sbjct: 1070 DDVFDDESAWIRFLKE-ELNEVKSGLS---SLVKLYPKTPNLILQSRIQWAKNFYKPFLD 1125 Query: 1119 FNQ 1121 + + Sbjct: 1126 WRK 1128 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 109/256 (42%), Gaps = 29/256 (11%) Query: 5 YHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPL 64 S L+ + + + ER + P +I+V ST M WL + LS+ G++AN+ F Sbjct: 6 ITSLSLEDMAVELSRNILEERKNSPLHSPVIVVPSTNMKLWLNLNLSRFSGLSANLRFLY 65 Query: 65 PASFIWDMF--VRVLPEIPKESAF-NKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 + + F L P + AF ++++ K++T L + + ++ LR +L + + Sbjct: 66 LEKALEEYFHLRANLDYDPFQRAFPSREATQRKILTFLIENVNSKETIFLRSFLENIT-- 123 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL------------GEAQAWQAPLW 169 + F LS+K L+ Y + R W+ W ++ E +Q L+ Sbjct: 124 -RAFSLSAKLTSLYKDYELNRSSWIQSWAKEKGIDIPMISRRPSPFPQEDEYYRFQKVLY 182 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESAT-TCPPGLPSRVFICGISALPPVYLQALQ 228 + + + + L Q F++ ++ P PS + + +S L YL L+ Sbjct: 183 QKVFLNSKEPN-------TLVQFFLKEIQKDKTHSPRNFPS-LHLFCLSNLADTYLGILE 234 Query: 229 ALGK--HIEIHLLFTN 242 +L + + I+L + Sbjct: 235 SLSQKDKLPIYLYQFH 250 >UniRef50_B0SIS7 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS7_LEPBA Length = 1099 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 158/935 (16%), Positives = 322/935 (34%), Gaps = 147/935 (15%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKF--GIAAN 59 + + L + + + +++E++++P +++V +T + WL++ + + ++ N Sbjct: 3 IHYFAGLHLHEITSELTKQIKKEQIENPLRMPLVVVPNTNLIPWLKLNIPKYNDSQLSIN 62 Query: 60 IDFPLPASFIWDMFVRVLPEIPK----ESAFNKQSMSWKLMTLLPQLLER--EDFTLLRH 113 I+F I M L +IP ++ S L + ++ ++ Sbjct: 63 IEFTFLEKAILKMIFTSL-QIPAWAESVEFYDYNSFKKDCFRYLYENQTSLFQNHPEIKT 121 Query: 114 YLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQW---ETGHLVEGLGEAQAWQAPLWK 170 Y+ S+ KL+ LS F Y + R +W+ QW E ++ L W Sbjct: 122 YI---SELPKLYYLSDLLTKYFKDYELNRSEWIHQWLGNEKSNIPNQLTSDPYWD----- 173 Query: 171 ALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL 230 +E LG + NLY L + +S L Y+ L+ + Sbjct: 174 --LEKEIYLGTNDGGKKNLYYYL------NKGKDLSLQGNLHFFCLSNLSGTYINFLKTV 225 Query: 231 GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSD 290 K NP + + + +N + N Sbjct: 226 SK---------NP-------------------NANLNIYIYQFHNGKVIGQNPEKTKNYL 257 Query: 291 GEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAV 350 + LA +++ L E+S +L ++S +LE + + Sbjct: 258 SKFAKPQSYLA------KEFSNLTKQKETS-------KYASGGMLAKLKSILLEEQVKEE 304 Query: 351 AGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVE-VLHDRLLAMLEEDPTLTPRDII 409 +N D ++ S RE+E + HD L + L+ D Sbjct: 305 NYLN----------------DQTVRVWNAPSEYREMESIAHDILHKISTSKGNLSLLDFA 348 Query: 410 VMVADIDSYSPFIQAVFGSA----------PADRYLPYAISDRRARQSHPVLEAFISLLS 459 ++V + + Y I+ VF P + L Y++SD A+++ + + F L Sbjct: 349 ILVPNTNDYKAAIEWVFHGGIYTTQRIDETPTLQRLNYSLSDLVAKETSLLYKVFEILFQ 408 Query: 460 -LPDSRFVSEDVLALLDVPVLAARFDITE-EGLRYLRQWVNESGIRWGIDDDNVRELELP 517 + R ++++ LL P++ + I + + Q ++ G + D+N E Sbjct: 409 SFLNKRIQKDELIHLLQNPLITGKNKIDSIDQTHSVIQLLDSLG---SLYDENKEE---- 461 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQ--SVLPYDESSGLIAELVGHLASLLMQLNIWR 575 +T FG+ R +L M W V+ + + + + L + Sbjct: 462 --NPYTISFGVKRAVLS-VMSDEATTWSHMGVITDPLAKEDSVLYLNLIWEEIKSLQSFF 518 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 + P+ E + N F ETE + +W IA+ ++ Sbjct: 519 ESEFLQLPINERFKAFQTKWNQFLKFSEETENERIYL-TEWLGNIAKWCDTEWNHVTDFL 577 Query: 636 LLRDELAQRL--DQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 + + + +L + I L PMR IPF + ++G+ +G +P Sbjct: 578 QFLQLQTEEIFSNIPTQKGNYLTEGITISLLQPMRPIPFSHIYIVGLGEGKFPGSKDVSR 637 Query: 694 FDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 F+L K D +R + L E ++SA+ + SY+G++ ++ E P + E++ Sbjct: 638 FNLRKNDSKPWDLNRIEIQESLLWETILSAEDSITFSYVGKNTLEDKEFEPCSSLFEVMH 697 Query: 754 YIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYA-----REWLP 808 +G E + P+ + Y SY +++ Sbjct: 698 SLG-------------IERATEI--------PLTPYS-RFYDREILHSYDYSRNLKQYRS 735 Query: 809 AASQAGKAHSEFVQPLPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 + K ++ LP E + + ++ + +P+ + + L F ++ E Sbjct: 736 LNTDLPKPDFTSLEDLPLPHSEWKFKKQISIASIASAFKNPILPYIKENLG--FMEDEEE 793 Query: 864 IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF 898 EPF L + + L E E + Sbjct: 794 TSLEEPFYFNALETFLFKSKFLPLFTESLAKEETW 828 >UniRef50_Q9RNX7 RecC1001 (Fragment) n=71 Tax=Bacteria RepID=Q9RNX7_ECOLX Length = 200 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 196/201 (97%), Positives = 198/201 (98%), Gaps = 1/201 (0%) Query: 555 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ 614 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ Sbjct: 1 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ 60 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD+ +S RFLAGPVNICTLMPMRSIPFKV Sbjct: 61 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDK-NVSARFLAGPVNICTLMPMRSIPFKV 119 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR Sbjct: 120 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 179 Query: 735 SIQDNSERFPSVLVQELIDYI 755 SIQDNSERFPSVLVQELIDYI Sbjct: 180 SIQDNSERFPSVLVQELIDYI 200 >UniRef50_UPI0001699EF8 Exodeoxyribonuclease V, RecC subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699EF8 Length = 196 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 124/204 (60%), Gaps = 9/204 (4%) Query: 1 MLRVYHSNRLD-VLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 M+ YHSNR++ +L+ L+E + L P E I+VQ+ GMA+WL L+ + G+AAN Sbjct: 1 MILSYHSNRMERLLDHLLEQL--STPLGSPLGRETIVVQNPGMARWLSQQLALRSGVAAN 58 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 ++FPLPASF W+++ L E+P ES F+++S+ W +M LLP LLE+ F L+ YL DS Sbjct: 59 LEFPLPASFTWNIYQAWLGEMPAESGFDRESLHWCIMGLLPGLLEQPAFAALQRYLEGDS 118 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 + + +QLS + ADLFDQYLVYRP + WE + G + + W+A LW+A+V T Sbjct: 119 GELRRYQLSGRIADLFDQYLVYRPQMVLAWENSAIETGT-QDEPWKAALWRAIVAQTQ-- 175 Query: 180 GQPRWHRANLYQRFIETLESATTC 203 HRA L+ RF + Sbjct: 176 ---AEHRAALFDRFQRMVARGDAP 196 >UniRef50_Q8ERW6 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Oceanobacillus iheyensis RepID=ADDB_OCEIH Length = 1166 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 124/590 (21%), Positives = 228/590 (38%), Gaps = 82/590 (13%) Query: 318 ESSQELDAFVDVTPD-NLLHNIQSD---------ILE-LENRAVAGVNIEEFSRSDNKRP 366 E + ELD F + ++L + + IL+ LE + + RP Sbjct: 245 EDASELDLFYQPSQTYHVLKQLAWEAGVPVEDPIILDTLEGNFQNRPYFAHMEKYFDSRP 304 Query: 367 LDPLDSSI---TFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 + + F H P+ EVE + ++L ++ D RDI +++ + Y I+ Sbjct: 305 APAYEGEVPIEIFEAVH-PRAEVEGIAQQVLELI-RDNRYRYRDIALLIRQPEVYHDLIE 362 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD---VPVLA 480 +F LP I ++R HP++E S+L + + ++ + +L +P Sbjct: 363 TIFNDYE----LPVFIDEKRPMLHHPLIELIRSILEVVQGNWRNDAIFRVLKTGLIPSAD 418 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 F +T + + L +V E GIR + + G++ W++ R A Sbjct: 419 DEFPLTMDSIDQLENYVIEFGIR------SRHQW----IGENKWKYQRFRGFDSSAQTDR 468 Query: 541 QGEWQSVLP--YDESSGLIAELVGHL--ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 + E Q + D+ IA + L A+ + L I +E + + L V R + Sbjct: 469 ERELQESMNRYRDQVISAIATVDEQLRAATTVKDLCIAMYQWLEELKIPDQLEVTRKYYD 528 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIA------EGLGAQYGDAVPLSLLRDELAQRLDQERI 650 LP+ E EQ W A+I E G + D + D + L + Sbjct: 529 DQGLPEKGREQ-----EQVWDAVIQLFDEMVEIAGEEKMDLSVFQVALDAGIETLQFSHV 583 Query: 651 SQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD------LMSQKP-KR 703 + + T+ R + LLG+N+G++P + G L+ Q K Sbjct: 584 PPSM--DHIIVGTIDRSRMSNIRCAFLLGVNEGIWPMKPTSDGMIDEAERLLLEQNGLKL 641 Query: 704 GDRSRR---DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI--GQS 758 D S R DD Y++L A A+ +L ISY+ S ++ + PS L+ + + ++ Sbjct: 642 ADTSERQLLDDWFYMYL-AFTVAKDRLKISYL-LSDEEGKAKMPSQLIHRVEELFPATKN 699 Query: 759 HYLPGDEALNCD---------ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPA 809 H L D + +S + + A L P DP ++ +W Sbjct: 700 HILLQDPEDESNTRRFVSTELKSRSALTAQLAKFKKGYPIDPIWWE-------VYQWYVE 752 Query: 810 ASQAGKAHSEFVQPLPF-TLPETVPLETLQRFWAHPVRAFFQMRLQVNFR 858 G +Q L + PE++ +T+++ + ++A RL+ +R Sbjct: 753 HHPQGGTTHRVLQGLHYENKPESLQKDTVEQLYPKRIQASVS-RLETYYR 801 >UniRef50_C8SXN2 Exodeoxyribonuclease subunit V gamma (Fragment) n=4 Tax=Enterobacteriaceae RepID=C8SXN2_KLEPR Length = 170 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 120/167 (71%), Positives = 141/167 (84%) Query: 956 LPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQ 1015 L QVQPDGLLRWRPSLLSV+QGMQLWLEHLVYCASGG GESRLF+RK+GEWRFP LA + Sbjct: 1 LQQVQPDGLLRWRPSLLSVSQGMQLWLEHLVYCASGGTGESRLFVRKEGEWRFPALAPAE 60 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A YL++L++GY GMS PLL+LPESGGAWLK CYDA+ D +L D+ T QKAR+KFLQ Y Sbjct: 61 AQAYLNELVDGYLLGMSQPLLLLPESGGAWLKACYDAEKDVILMDEETQQKARSKFLQTY 120 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 EGNM+V GEG DIWYQRLWR L P E I+ Q+QR+LLPL+R+++S Sbjct: 121 EGNMVVSGEGADIWYQRLWRSLEPAHYEEIIAQTQRYLLPLYRYHRS 167 >UniRef50_B7J2J0 Exodeoxyribonuclease V, gamma chain n=26 Tax=Borrelia RepID=B7J2J0_BORBZ Length = 1079 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 92/604 (15%), Positives = 215/604 (35%), Gaps = 71/604 (11%) Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV--ADIDSYSPF 421 K P+ LD S + +REVE+L ++++ ++++ L DI + + Y P+ Sbjct: 282 KTPISTLDDSFKIIEAKNQKREVEILTNQIVHSMQKN-NLKLSDIAITCLQEKFNEYLPY 340 Query: 422 IQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD---SRFVSEDVLALLDVPV 478 I+ + Y ++ +S L+ + L + S F ++V LL Sbjct: 341 IEECLNKYEIE-YSVLCYNNLSRGESIIALKRLMDLFVSKNGTISNFSRKEVFDLLSNNK 399 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 + +F+I+ L YL ++ + I +G + + L ++W G R L+ + Sbjct: 400 VMKKFNISTSELNYLIEFSDTMNISFGANKTHKENLNYDQNFLNSWEDGFNRFLMSEIFD 459 Query: 539 S-AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 + E Q + I +L+ + SL +N ++ + + EW + + Sbjct: 460 EKYEEETQKESTRFQDQESIMKLITIVKSLYEDINYFKN---KAYKVYEWAEIIEIFIQK 516 Query: 598 FFLPDAETEAAMTLIEQQWQAI------IAEGLGAQYGDA-----VPLSLLRDELAQRLD 646 + + + ++ + ++ + + L Y + L + L + L+ Sbjct: 517 YIDLE-DFNTTDEYLQNKIKSFKNFPKDLNDNLYKNYLKEINEIKIEFYLFKIMLEESLE 575 Query: 647 QERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR 706 +E+ + + I + + K + LG + ++ +L+++ + Sbjct: 576 KEKYGVMYKKNGILIANYKEIEYLQKKEIHFLGF--QKFNSKINYDNMNLLNEYYEH--E 631 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS--ERFPSVLVQELIDYIGQSHYLPGD 764 + ++ + + +K Y+ S QDN E S + +++++I + Sbjct: 632 NTEKEEITALFNLIFATSEKFYLYC---SFQDNLSPEINTSKTINKILEHIQKYE----- 683 Query: 765 EALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ---SYAREWLPAAS--QAGKAHSE 819 K H DP ++ + +Y E A Q K Sbjct: 684 ------------KNFQIEKHPNENHDPVYFKDAKENYLINYDPEAYNIAKILQNSKPIGF 731 Query: 820 FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRL-----QVNFRTEDSEIPDTEPFILEG 874 + P + L L+ ++P + F++ L + E E + + F + Sbjct: 732 KQNKIKLESPIKLNLYELKNALSNPYKHFYEKTLNVKIQDIRLENEIKEKQEEQIFSVIE 791 Query: 875 LSRYQI--NQQLLNALVEQDDAE---------RLFRRFRAAGDLPYGAFGEIFWETQCQE 923 + Y++ N LL+ + + R G +P+ + ++ Sbjct: 792 II-YRLIKNSTLLHEYIMGKKDDARKAIEIIKNHIRYEIQQGSIPFNIDQKTTVNEILKK 850 Query: 924 MQQL 927 + +L Sbjct: 851 INKL 854 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 86/198 (43%), Gaps = 18/198 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEM-ILVQSTGMAQWLQMTLSQKFGIAANI 60 + +Y +N+++ + ++ + ++ D+ F+ E I+V++ + + ++ T+++ GI+ N+ Sbjct: 1 MYIYKTNKVNKIYNKIKELTQK---DNIFKKETLIIVKNDLLREEIKKTIAKLNGISYNL 57 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMT---LLPQLLEREDFTLLRHYLTD 117 + A+ ++ + + + S+ L T +L +L+ E Y+ D Sbjct: 58 NIKKNAA--KSIYEISFKNPNIKKYIEENTFSFYLETEKFILYNILKTEKL----KYIKD 111 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV---EGLGEAQAWQAPLWKALVE 174 + + +SK DLF Y + WE + E L + Q L+K L E Sbjct: 112 FKSTKNRYFFASKIIDLFHHYYSKFSKLIETWEDNGFLFQEENLKPYENMQKELFKKLFE 171 Query: 175 YTHQLGQPRWHRANLYQR 192 Q H+ + ++ Sbjct: 172 --KQKNILNLHKKIIQEK 187 >UniRef50_Q9K2F1 Exodeoxyribonuclease V, gamma subunit, putative n=7 Tax=Chlamydophila RepID=Q9K2F1_CHLPN Length = 1024 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 180/1129 (15%), Positives = 369/1129 (32%), Gaps = 221/1129 (19%) Query: 12 VLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWD 71 +L L E I + PF ILV + W++ L D S I+ Sbjct: 18 LLAQLAEDITSTHQK--PFTKRWILVANATTGHWIKNQLVHVLS-----DHIFMGSTIFT 70 Query: 72 MFVRVLPEIPKESAFN----KQSMSWKLM--TLLPQLLEREDFTLLRHYLTDDSDKRKLF 125 ++ + S + ++ L+ +L ++ + F R +L+ + + Sbjct: 71 ASDSIVKHLFLGSGCSQPNIPDYLTLPLLINNILEEISKASKFENGREFLSPPT-----Y 125 Query: 126 QLSSKAADLFDQYLVY--RPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPR 183 + + K A F Q+ + RP A +Q L++ L Sbjct: 126 ETTKKLAAAFKQFHTFSQRP--------------TKNASHYQ-ELFQIL----------E 160 Query: 184 WHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNP 243 H ++ + F L + T + I G + LP + L + ++ +P Sbjct: 161 SHFSSYEEMFTTILNNRTQEEDC---SLHIFGYAHLPKHLAEFFINLSTYFPVYFYCFSP 217 Query: 244 CRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASW 303 CR Y+GD+ + + ++ A LLA+ Sbjct: 218 CREYFGDLLSDRAIDFFWNQLPDSPIKNAWEHYVLSDRQA---------------LLANL 262 Query: 304 GKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDN 363 + D E + + F+ D+ L IQ+ IL+L+ + + + Sbjct: 263 AHKSQSSQNFFLDREIDYQ-EMFLPSKHDSSLGVIQNSILDLKPTSPQDFSQTK------ 315 Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 +I + + REV+ + ++ +L ++P +I ++ + I+SY + Sbjct: 316 --------QTICIYRALNIPREVQEVFCKVTELLHR--GVSPEEIFILSSHIESYKVHLN 365 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF 483 A+F ++P +D ++ + + L S+ ++ +L LL P L Sbjct: 366 AIFN-----PHVPIYFTDEVDPRAEDLRNKILLLSSILQTQGDLHYILQLLTHPQLQQ-- 418 Query: 484 DITEEGLRYLRQWVNESGIRWG-IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQG 542 I + + YL + ++ WG I + G M++ Sbjct: 419 PIDQNKVPYLIKKLSS---EWGKISSKDRAS--------------------GQQMKALGD 455 Query: 543 EWQSVLPYDESSG--LIAELVGHLASLL----MQLNIWRRGLAQERPLEEWLPVCRDMLN 596 P+ + G E+ L+ ++N++ + + E+ L Sbjct: 456 LILEEYPFHQEGGRVSQVEVWETTVPLIYFIQERINLYLS--SSQHSYEDLFQNVFSCLE 513 Query: 597 AFFLPDAETEAAMTLIEQQW-QAIIAEGLGAQYGDAVPLSLLRDELAQR-LDQERISQRF 654 F+ E + +T + + L L L + Sbjct: 514 KIFVLSPEETSFITTLRNSLFPTFATSSCSLLFFTDFCLDFLLHFHKPSPLYDKPGPY-- 571 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ---KPKRGDRSRRDD 711 I +L + IP V +LG N + + FDL+++ + S D+ Sbjct: 572 ------IGSLSSLSLIPKGYVFILGAN-----KTTSSDIFDLLNRTTTHEELAFSSTEDE 620 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE 771 + + FL+ L+S + +L+ISYI + Q N PS +++I ++ LP + Sbjct: 621 ENFHFLQILVSTKHELHISYISSAAQFN---LPSPF----LNHIKETLDLPVETL----- 668 Query: 772 SEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPL------P 825 P+ ++ ++E+ + + A + + L Sbjct: 669 -------------PTQPYLSAFFKNKACLHTSQEYNYSLAHAFYSKKALLPSLFIPTVKQ 715 Query: 826 FTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL 885 LP+ + L + + P+ F + + + + F ++QI Sbjct: 716 VNLPQHLSLNEIIKGIFSPLDLFLKTNYNLRISYPEHLKKQQKLFPT----KHQIEDFWN 771 Query: 886 NALVEQDD---------AERLFRRFRAAGDL--------PYGAFGEIFWETQCQEMQQLA 928 V+++ AE LF +R L P + + + + E + Sbjct: 772 ECFVDKEHDLIPSISPHAEELFTYYREKTILLRNGLDKDPKHSPYTVTFSSSIFEERPYH 831 Query: 929 DRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPS------------------ 970 + + + + N VQI G + V +GL Sbjct: 832 ESYLF-----PPLSLSFQGNPVQIHGTIHGVCNEGLYLCSIDPGDSLKKTTRTLGSLPET 886 Query: 971 LLSVAQGMQLWLEHLVYC-ASGGNGESRLF---LRKDGEWRFPPLAAEQALHYLSQLIEG 1026 Q ++ ++ V + + +S L E PP + YL +++E Sbjct: 887 SSEQKQLLERYVALAVLQMSQHLSSDSALIKLTSFNXKENHHPPFS--DPEXYLRKVLEV 944 Query: 1027 YREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 Y S P+ +L S W KT D + + ++A+ L + Sbjct: 945 YHLMSSQPIPLL--SPLCW-KTLDDEEKFHQAVLSAISEEAKNPSLPIF 990 >UniRef50_A4J4E2 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Desulfotomaculum reducens MI-1 RepID=ADDB_DESRM Length = 1155 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 136/700 (19%), Positives = 234/700 (33%), Gaps = 140/700 (20%) Query: 318 ESSQELDAFVDVTP--DNLLHNIQSDILELENRAVAGVNIEEFSRSDN----------KR 365 E EL+ F LL + + LE + G + D+ + Sbjct: 241 EPCDELEFFYPTVETYHTLLDMAGALRISLEPPIICGKETPVRFQKDSAIAHLEKYYFRH 300 Query: 366 PLDPLDSS--ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 PL D++ ++ C + + EVE ++ + E+ L+ RDI+V++ D+ +YS I Sbjct: 301 PLQASDAAQGVSLVACANRRAEVEAAAREIIRLCREE-ELSWRDIVVVLRDLTNYSDLIN 359 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF 483 +F D +P I ++R HP++E S L + + + V L ++ + Sbjct: 360 TIFN----DHGIPVFIDEKRNVLHHPLVELIRSALEVITQHWAYDPVFRYLKTDLIPVQ- 414 Query: 484 DITEEGLRYLRQWVNESGI---RW--GIDDDNVRELELPAT------------GQHTWRF 526 + + L +V GI RW D R+ L + R+ Sbjct: 415 ---RDDVDRLENYVLAHGIRGNRWNDNRDWTYRRQYTLGEDCDIDDNEAEQLAQLNVVRY 471 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEE 586 + ++ + A G + ++ L LL L++ R +E Sbjct: 472 AAIEHINNFSKKVAN------------CGNVRQITTALFELLESLSVAER-------MEA 512 Query: 587 WLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD 646 W E E A LIE + A I + + ++ Q L+ Sbjct: 513 WAK--------------EAEVAGRLIEAKEHAQIWDNVILLLD-----EIVEAMGEQELN 553 Query: 647 QERISQRFLAG--------------PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 E Q AG V + TL R+ K +LG++DGV P + P+ Sbjct: 554 LEEYLQVLEAGLESLKLGLIPPGLDQVVVGTLERSRNPNVKAALVLGISDGVLPAR--PV 611 Query: 693 GFDLMSQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSE 741 L S + G R + D++YL AL A +L++SY + Sbjct: 612 EEGLFSDYEREALREIGLNLAPGARRKLFDEQYLIYTALTRASSRLWLSYPQADD-EGKA 670 Query: 742 RFPSVLVQ---ELIDYIGQSHYLPGDEAL--------NCDESEARVKAHLTCLHTRMPFD 790 PS ++Q EL+ I + L N S + + A L D Sbjct: 671 LMPSPVIQRVKELLPLIQEEILPVEPPCLGGDLAFIANPSRSLSYLAAMLRETVAGRLVD 730 Query: 791 PQNYQPGERQSYAREWLPAASQ--AGKAHSEFVQPLPFTLPETV-------PLETLQRFW 841 P ++ + + AG H LP ++ + + L+RF Sbjct: 731 PVWQDVYSWFVQQPQYQESCRRVLAGLYHVNQETSLPPSMGRRLYGSRLRASVSRLERFT 790 Query: 842 AHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRF 901 P F L++ R++ F L Q L AER+ Sbjct: 791 TCPFSHFLSHGLKLKERSQ---------FKLAAPDLGQFFHAALKLF-----AERIKALS 836 Query: 902 RAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSM 941 G L G I E + QL + ++ + + Sbjct: 837 LDWGQLSRGQIITITGEIVEELAPQLQNEILLSTARHRYL 876 >UniRef50_A2PDE9 Putative uncharacterized protein (Fragment) n=1 Tax=Vibrio cholerae 1587 RepID=A2PDE9_VIBCH Length = 247 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 25/228 (10%) Query: 906 DLPYG-AFGEIFWETQCQEMQQLADRVIA--------CRQPGQSMEIDLACN------GV 950 LP A G+ W E+ Q A + +A C QP EIDL V Sbjct: 12 QLPNSTAQGKCRWRRWRSELAQSAQQALALAEKIGFLCHQPLDDEEIDLRLQPFDDGREV 71 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL--RKDGEWR- 1007 + GWL + GL+R R + + W++HL ASG + L RK+G Sbjct: 72 LLRGWLVKRYQSGLVRARSGAIRSEDLLAAWIDHLCLAASGKAVTTHLIGYERKEGVQHQ 131 Query: 1008 -FPPL-AAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 PPL A+QA LS+L+ + +GM+ PL P++ A ++ + + + Sbjct: 132 MLPPLNDAQQAKALLSELVALFCQGMNQPLAYFPKTALACVEAGF-----SRGKWQEDEE 186 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFL 1113 K+ K + + + ++GEG + + R+W Q + E + + + + + L Sbjct: 187 KSYKKMVDTFNDSFYIKGEGGNRYIARIWPQWSDELAKTLRQLAIKVL 234 >UniRef50_Q3KL55 Exodeoxyribonuclease V gamma chain n=11 Tax=Chlamydia RepID=Q3KL55_CHLTA Length = 1006 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 172/1094 (15%), Positives = 317/1094 (28%), Gaps = 195/1094 (17%) Query: 6 HSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTL--SQKFGIAANID-F 62 SN +VL A + + P ILV S+ WL+ L + I F Sbjct: 11 FSNYPEVLLAKLAQDLFSI-NQTPMTKRWILVPSSDTDHWLRRELVKASSNHIFMGTHIF 69 Query: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKR 122 +F+ +F + S + ++ + LL + + +L S Sbjct: 70 ASFDAFVKYLFTGT--RLVDLSTPDHITLPLTIYNLLKESSFNSSSEVSYSHLQKLSSIF 127 Query: 123 KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQP 182 K F F Q +K L P Sbjct: 128 KKF-------YTFSQ-----------------EPSTNNPY------YKNLFAQLKDSYTP 157 Query: 183 RWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTN 242 S P P + I G LP ALGK+ +H + Sbjct: 158 LETI----------FSSILDHPLEYPCSLHIFGYPQLPQHVASFFVALGKYFPVHFYCFS 207 Query: 243 PCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLAS 302 P Y+GD+ +A L R E E + D LLA+ Sbjct: 208 PSAAYFGDLLSDKAMAALSPRIPEPQQETWEKYVLTDRLA----------------LLAN 251 Query: 303 WGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSD 362 + D E + F + LH ++ L+ Sbjct: 252 LAHKSQSLQNFFLDCSVPYE-ELFQPYEKLSSLHIVKDSFFHLQPI-------------- 296 Query: 363 NKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFI 422 +++ +I S REV L + +L +I ++ +++ Y + Sbjct: 297 DQKLFSNSPQTIFVRQAPSASREVHQLFSLVSQLLHSGVPAQ--EIFILSSNLSKYETLL 354 Query: 423 QAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR 482 + +F + +LP ++ Q+ + + +++ S+ D+L +L P L Sbjct: 355 RGIF-----EPHLPLYLTKTEKTQTRTLKNKLLLVVTFLFSKGSLNDLLRILSHPDL--- 406 Query: 483 FDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQG 542 ++ + ++ W ++ + + P T + R+L Y G Sbjct: 407 --LSPLETTKMGFLTHKLTHYW----KSLSQKDSPLTQL------IHRILDEYPFIDDTG 454 Query: 543 EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL--AQERPLEEWLPVCRDMLNAFFL 600 AE + LL L ++++ EE + L F Sbjct: 455 SVN-----------EAETWEVVVPLLHTLQQVTASYIESKDKTYEEHSRLIFSTLENIFF 503 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 E A + + + Q + L++ + L + P Sbjct: 504 LSTEEHALLVSLSKTLQPFVRSSC--------SLTIFIEFCLDFLSHIPGHSQLYNQPGP 555 Query: 661 I-CTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD---RSRRDDDRYLF 716 +L + IP +LG N + F L+ + D S D+D F Sbjct: 556 FIGSLNSLSLIPKGYTFILGANKKDH---SLDTSF-LIDPSLIQEDFLFSSTEDEDNLHF 611 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG-QSHYLPGDEALNCDESEAR 775 L+ ++S + +L+ISY+ S PS ++ L+D + Q +L G + S Sbjct: 612 LQTIVSTKHQLHISYLSSSKN---PALPSSALKHLLDAVPIQEEHLSGKLYAKKNFSSEP 668 Query: 776 VKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLE 835 + + P KA S F TLP + L+ Sbjct: 669 LHQSYQVYYRMAQVSP--------------------LQNKAPSLFKSDTTKTLPSHLSLQ 708 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN--------- 886 L + + P+ F + +F + +E LL+ Sbjct: 709 HLIKAFKDPLNFFLSTQHGFSF-HPKALFSKSEKVFPSPHDAKAFWNHLLSSKTPLPTTN 767 Query: 887 ------ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQS 940 + D + + +R P + + Q D + Q Sbjct: 768 YLSAFTESLYTDVQDSVSKRLETLQKDPATTPFSVVFSDQL-----FHDPLHPNDQQVSP 822 Query: 941 MEIDLACNGVQITGWLPQVQPDG--LLRWRPSL---------------LSVAQGMQLWLE 983 + + L + + G + V G L P + ++ +L Sbjct: 823 LLLSLPLKNIHLQGTIHGVCSKGVYLFSMHPGEAFKKTQKTHGFPKDAFELESYLESYLS 882 Query: 984 HLVYCASGGNGESRLFLR---KDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPE 1040 + AS + LR D E PP ++ + YL + I Y + + + Sbjct: 883 LALLQASHLLPKEATILRVTPHDIEPILPPFSSPE--SYLIRAIHLYELLQNQAIPLPSA 940 Query: 1041 SGGAWLKTCYDAQN 1054 ++K A Sbjct: 941 QAWEYIKKTDSASQ 954 >UniRef50_C6CTT5 ATP-dependent nuclease subunit B n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTT5_PAESJ Length = 1175 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 109/637 (17%), Positives = 211/637 (33%), Gaps = 92/637 (14%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 ++ H + + EVE ++ + L RD+ VMV + Y+ +IQ +F Sbjct: 319 LSLHASANRRAEVEAAARDMVRR-AREEGLRWRDMAVMVRNAAEYTDYIQTIFDDYE--- 374 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEG---- 489 +PY + + HP++E S L + E V + +L F I Sbjct: 375 -IPYFLDQKNNTVHHPLVEFIRSALETVLHGWHYEAVFRCIKTELL---FPIDGSMSREL 430 Query: 490 LRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP 549 L +V +G+ G + + P Q ++E Sbjct: 431 FDRLENYVLAAGVD-GWKWLDRSRWK-PFMQQ--------------SLEDEPDTVSEPSA 474 Query: 550 YDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAM 609 + A + A ++ L + + L + +++ +L+ D + Sbjct: 475 KAKRE-FQAIMAAREA-IVPPLRRFEQSLKKASNVKDMCEALYKLLDHADAADRLERWSR 532 Query: 610 TLI-----------EQQWQ---AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 Q W ++ + + + +P L + L+ +++ Sbjct: 533 EDSASGRTQRARSHRQLWDGVMQLLDQLVEMVGDEDMPPELFAGMVETGLENLKLAAVPP 592 Query: 656 A-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-----------R 703 A I ++ RS K+ +LG NDGV P ++ G +++++ + Sbjct: 593 ALDQALIGSMDRTRSGDVKICYVLGANDGVMPMRIQEDG--VLTEQERERLAEEGLVMAP 650 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID-------YIG 756 G R R D+R+L AL +A Q L+IS+ ++ ++ PS +++++ Y Sbjct: 651 GVRRRLLDERFLIYNALTTASQHLWISW-AQADEEGKTLLPSEVIRQVRQLFPGIPVYQK 709 Query: 757 QSHYLPGDE---ALNCDESEARVKAHLTCL--HTRMP--FDPQNYQPGERQSYAREWLPA 809 PG E + E R A+L R P + + EW Sbjct: 710 AGEPTPGMETGDQRSYIEHPQRTLAYLITELRAWRQGSEIAPFWWDVYNWFAIRPEWQDK 769 Query: 810 ASQAGKAHSEFVQP--LPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRT- 859 + S Q L T E + + ++RF + P + F L++ R Sbjct: 770 LQLMNASLSFSNQETVLTTTTAEQLYGTKLKASVSRMERFVSCPFQHFAIHGLRLRERQM 829 Query: 860 -EDSEIPDTEPF--ILEGL-----SRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGA 911 + F L L R+ + + L R ++ L G Sbjct: 830 YRLEAPDVGQLFHAALSRLAGGVGQRWGSMPEAQIREAAAKAVDELAPRLQSQILLSSGR 889 Query: 912 FGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACN 948 F I + + Q A + + Q + L + Sbjct: 890 FQYIA-RKLKEIVAQAAVILSEHSRRAQFQPVGLEVD 925 >UniRef50_C0GDI4 ATP-dependent nuclease subunit B n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDI4_9FIRM Length = 1147 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 171/1044 (16%), Positives = 310/1044 (29%), Gaps = 204/1044 (19%) Query: 21 VERERLDDPFEPEMI-LVQSTGMAQWLQMTLSQKFGIAANIDFP----LPASFIWDMFVR 75 + +P P +I LV Q ++ L+Q G F + + Sbjct: 22 IAHYSKTEPMGPPIIFLVPEQATFQ-MERELAQMCG---GGTFRAQVLSFRRLAYHLLQS 77 Query: 76 VLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLF--QLSSKAAD 133 P S +Q +L +LL+ L + + ++ F QL+ + + Sbjct: 78 KGGLPPVMSELGRQM-------VLRRLLQESQAEL---TIFGRAAQQPRFCEQLAVQIRE 127 Query: 134 LFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRF 193 L + YLV P+ L + GEA L + + R A + Sbjct: 128 L-NNYLVS-PEML---KNQAASPETGEALR------SKLSDLSTVFAAYRTFTAGSFMDP 176 Query: 194 IETLE--SATTCPPGLPS--RVFICGISALPPVYLQALQAL---GKHIEIHLLFTNPCRY 246 +TL +A LP+ RV++ G + P Q L AL +H+E+ L Sbjct: 177 EDTLAILAAAVEEGALPAGTRVWVDGFAGFTPQEFQVLSALFSTAEHVEVALCL------ 230 Query: 247 YWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKL 306 DP ++ E ++ +P L Sbjct: 231 ------DPRHIPAQPQ-----------------------------EDELFHPTL------ 249 Query: 307 GRDYIYLLSDLESSQELDAFVDVTPDNL-LHNIQSDILELENRAVAGVNIEEFSRSDNKR 365 + L L + A + P+ L L Q+ E V R Sbjct: 250 --ETYLQLRRLVGEAGVPA---LPPEQLPLDEKQTRFAHSEALQVLEAGFGRLPVESYPR 304 Query: 366 PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 + I + EVE + +L ++ E RDI +++ D Y + A+ Sbjct: 305 EAEE----IRLVTAAGTRAEVEAVACDILHLVRE-KGWRFRDIGMILRDFSRYHDLVAAI 359 Query: 426 FGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDI 485 F + +P+ + +RR+ HP++E S L + F E VL LL +L I Sbjct: 360 F----QEYQIPFFVDERRSATHHPLVEFLRSALDAAQANFALEPVLQLLKTDLLP----I 411 Query: 486 TEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA--------- 536 + E L + GIR W F L R+ L + Sbjct: 412 SRETADKLENYARAHGIR-----------GSRWLDGKPWSFRL-RLSLDESRDTATETDA 459 Query: 537 ----MESAQGEWQSVL-PYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVC 591 + + + + P++ G A + L E L+ W Sbjct: 460 HLEEINEGKTVFGRIFTPFNRQVGGSARPAADFCRAIWAL---LESTDAELQLQNWSEE- 515 Query: 592 RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 + T A + ++ + + + L L L+ + Sbjct: 516 --------DANPATAAQHRQVWSGVVELLEQIVSTLGERQISLQEFSQILQAGLEALTLG 567 Query: 652 QRFLAG--PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG----- 704 AG V + ++ R + +LG+++G +P +L G L++ + + Sbjct: 568 L-VPAGLDQVIVGSVERSRQPRLRAAYVLGLSEGDFPARLKEEG--LLADEEREALQENG 624 Query: 705 ------DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 R + ++YL AL + + L++S + + PS L L + + Sbjct: 625 VDLAVTKRQKLFHEQYLSYIALTRSSEYLWVSCPLADE-EGKAKRPSALFNRLRETFPYN 683 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGK--- 815 + E + + G + A + Sbjct: 684 DVHFFGNTPDSKEDLHALAGAEKSAAALLLQAGGVAAGGAMSDFWAAAYNEALSIPQVYN 743 Query: 816 ---------AHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRT 859 + PLP + + L++F P F + L++ R Sbjct: 744 RMRMLWPSLTERNHIAPLPAETVLEILGTELKSSVSRLEQFARCPFAHFARYVLRLQERH 803 Query: 860 EDSEIPDT-------------EPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGD 906 E E EGL Q+ + A + E L R + Sbjct: 804 EFRVEAPEMGNFFHHALRLFAESLQAEGLDWAQLETEEAQARMNSI-VEELIPRLQGEIL 862 Query: 907 LPYG---AFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNG---VQITGWLPQVQ 960 L E ET Q + L + + ++E+ Q+ Q++ Sbjct: 863 LSSARMRYLAERLKETLAQAVAALTEHARRSQFKTVAVEMSFGSGKTPAWQLRCGQTQLK 922 Query: 961 PDGLL-RWRPSLLSVAQGMQLWLE 983 G + R + WL Sbjct: 923 LYGQIDRIDLAEAEGK----AWLR 942 >UniRef50_A1HTK8 UvrD-like DNA helicase, C terminal n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTK8_9FIRM Length = 1160 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 127/682 (18%), Positives = 228/682 (33%), Gaps = 103/682 (15%) Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSS-ITFHVCHSPQREVE-VLHDRLLAMLEEDPTL 403 + E +D + P D +T + + EVE + D + L D Sbjct: 276 RRFQAPILAYVERYANDARPPAWRGDKQGLTIAEAANRRTEVEGIARDMI--RLCRDEGY 333 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 RD+ V++ D+D Y ++ V +P+ +R HP+ E S L + Sbjct: 334 RWRDMAVLLRDMDGYIDLVETVLADYD----IPFFSDRQRPAVHHPLAELIRSALEVVTE 389 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGI---RWGIDDDNVRELELPATG 520 R+ E V L + F ++ + + L +V E GI RW D+ Sbjct: 390 RWAYEPVFRCLKTDL----FPLSRDEIDLLENYVLEFGIRGSRWTKDEP----------- 434 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNI------- 573 W F + R+ L E A+ + + D + + L L Sbjct: 435 ---WTF-VRRLSLD---EDAEPDERQQAYLDRINAIRCRAAKPLIRFEQALTQAETVREM 487 Query: 574 ------WRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ 627 L LE+W D E E I ++ + + Sbjct: 488 TAALYGLLADLDVPATLEKWAAAAST------ARDPEQEREHRQIWHSIVDLLDQIVDTC 541 Query: 628 YGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 + L+ + + L+ + V + L R + KVV L G+NDGV P Sbjct: 542 GEQPMSLTDYAAVVNEGLEGLTFNIIPPGLDHVTVTPLTRAR-LAAKVVYLPGVNDGVLP 600 Query: 687 RQLAPLGFDLMSQKPK---------RGDRSRRDD---DRYLFLEALISAQQKLYISYIGR 734 + G L+S + + G +R D ++++ AL A +L++S+ Sbjct: 601 ERGREEG--LLSDRERAELASLGLELG-PTREADVFAEQFVVYTALTRASDRLWVSFPLA 657 Query: 735 SIQDNSERFPSVLVQELIDY--IGQSHYLPGDEALNCDE--------SEARVKAHLTCLH 784 + PS++++ L + I LP + ++ S A + A L Sbjct: 658 DA-EGKALAPSLIIRRLKELSGIEALKPLPVEPPPGAEDEYIVHPRRSLAALAAGLRPAL 716 Query: 785 TRMPFDPQNYQPGERQSYAREWLPAA---SQAGKAHSEFVQPLPFTLPETV--------- 832 P ++ + AR L A + AG H Q LP L + + Sbjct: 717 AGQPVG-TLWRDLYNWAVARPDLAADLRRAVAGLFHRNQEQALPPELAQRLYRRQGKLRG 775 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRT-EDSEIPDTEPFILEGLSRYQINQQLLNALVEQ 891 + + F A P + F + L + R + PD F L ++ + +E+ Sbjct: 776 SVTRFEGFQACPFQHFARYGLALKERAVAQLKAPDFGQFFHAALRQFGLR-------IEK 828 Query: 892 DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQ 951 + RR++ GD+ G + + +L + ++ Q I Sbjct: 829 ELTADNQRRWQRWGDVQDEEIGPLCEAIVQELAPKLQNEILLSS--AQYRSITRRLQRTL 886 Query: 952 ITGWLPQVQPDGLLRWRPSLLS 973 V+ D R++P L Sbjct: 887 QRTVTRLVRLDRRSRFKPVALE 908 >UniRef50_B0TDI1 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=ADDB_HELMI Length = 1224 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 83/440 (18%), Positives = 145/440 (32%), Gaps = 61/440 (13%) Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 + ++E F P S+ + + EVE ++ + D Sbjct: 287 RFQHPELQHLESFYFRRPAPPWLGGTQSLFVCAAANRRSEVEGAAREIIRLC-RDQGYRW 345 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 RD+ V++ D++SY I++VF +P I +R HP++E S L + Sbjct: 346 RDVAVLLRDLESYYDSIESVFSDFG----IPLFIDSKRPAPHHPLVELIRSALEAVLRDW 401 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWR 525 E V L ++ ++ L +V GIR G + W Sbjct: 402 AYEPVFRYLKTDLVP----LSRGETDRLENYVLAHGIR-GRRWRDREP----------WL 446 Query: 526 FGLTRMLLGYAMESAQGEW--QSVLPYDESSGLIAELVGHLASLL-------------MQ 570 F R+ LG E A E+ Q + E +G LAS Sbjct: 447 F-RRRLTLG---EDALSEFSDQELAELAEINGARDRARAALASFHKAVVGAKAVRPITAA 502 Query: 571 LNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD 630 L L + W+ A E A + + + + + Sbjct: 503 LYQLLVDLKAPEQISCWIA------EAEAAGRIEEAHAHRQVWAAVIDLFDQIVESLGET 556 Query: 631 AVPLS---LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPR 687 + L+ ++ + L I V + +L R + +LG+++GV P Sbjct: 557 PLDLATYAVVMEAGLDSLKLSLIPPEL--DQVFVGSLDRSRCPGIRAAFVLGVSEGVLPA 614 Query: 688 QLAPLG-FD---------LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQ 737 + G FD L + G R R D+ Y AL A ++ Y+SY Sbjct: 615 RPKDDGIFDDKERERIYALTGLELAPGSRRRLFDEEYHIYVALTRASERCYLSYPLADA- 673 Query: 738 DNSERFPSVLVQELIDYIGQ 757 + + PS ++ + + Q Sbjct: 674 EGRAQLPSSVIARVRELFPQ 693 >UniRef50_Q18AP0 ATP-dependent helicase/deoxyribonuclease subunit B n=9 Tax=Clostridium RepID=ADDB_CLOD6 Length = 1155 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 97/585 (16%), Positives = 202/585 (34%), Gaps = 99/585 (16%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 I ++ EVE + ++ ++ D + RDI + D++ Y + ++F Sbjct: 310 IKIKEFNNLYSEVEEIAREIVHLV-RDKNVRYRDITIATRDLNRYDFLVHSIFNEYN--- 365 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYL 493 +P I +R +S+P++ IS L + + R+ E + L ++ I + + L Sbjct: 366 -IPNFIDKKREAKSNPIVILIISALEMKNRRYGYETMFRYLKSGLI----GIDNDDINLL 420 Query: 494 RQWVNESGI---RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPY 550 +V +GI +W D+ W + R+ + + ++ E + Sbjct: 421 ENYVLANGIKGKKW-FDEK--------------WDY---RITQSLSGQESEFELELKEKI 462 Query: 551 DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP--------- 601 +E +L + I + L + ++E + L +P Sbjct: 463 NEIKN----------RVLEPIVILQEKLRGKNRVKEICRYIYEFLLDINMPETIESLIVN 512 Query: 602 --DAETEAAMTLIEQQWQ---AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 D Q W I+ + + + + L + D+ + + Sbjct: 513 FKDKGELDVANQYSQVWDIVVDILDQMVELMGDEIISLEKFIKLITLGFDEYELGLVPPS 572 Query: 657 -GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD---------R 706 V + ++ M++ K + L+G DGV+P G + + G+ + Sbjct: 573 IDQVLVSSVDRMKNPDTKYLYLVGTTDGVFPLITKDSGILSDNDRESLGNKGIEVDIDSK 632 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY---IGQSHYLPG 763 +R ++++L +AL S + L I+Y S + PS+++ L I YL Sbjct: 633 TRSFEEQFLVYKALTSTSKNLTITYP-ISDHEGKTLRPSIIISRLKKIFPNIENKSYLVE 691 Query: 764 DEALNCDESEARVKAHLTCLHTR----MPFDPQNYQPGERQSYAREWLPAASQAGKAH-- 817 + + ++ + +D Y E S WL K Sbjct: 692 ENKNTDKDILKKITVKSPTFNELINVIKNYDSDGYNTEEINS---IWLDIYRYYLKDEIY 748 Query: 818 ----SEFVQPLPFT---------------LPETVPLETLQRFWAHPVRAFFQMRLQVNFR 858 + ++ L +T ++ + L+++ P F Q L+ R Sbjct: 749 SSITKKVIKGLSYTNQVHKIEEKKIRSLYKSNSLSISRLEKYAECPFAYFIQYGLKAKKR 808 Query: 859 TEDS-EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFR 902 E S PD FI L R+ ++LL + D + + + Sbjct: 809 KEYSFTPPDLGTFIHNILDRFS--KELLQDNLTWRDIDEKYIELK 851 >UniRef50_UPI0001AF5A75 exodeoxyribonuclease V, gamma subunit n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF5A75 Length = 249 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 83/237 (35%), Gaps = 34/237 (14%) Query: 900 RFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ-----SMEIDLACNGVQITG 954 + +A+G LP FG + + + + R ++ I + +GV I G Sbjct: 14 KLQASGLLPLAGFGTSMQDELIEPLPDVLKRYHDLLTLWPETLSSALPISFSHSGVSIDG 73 Query: 955 WLPQVQPDG-----LLRWRPSLL------SVAQGMQLWLEHLVYCASGGNGESRLFLRKD 1003 WL + +G L+ P+ + + ++ W+ HLV CA S + D Sbjct: 74 WLGGLHRNGSGELLLVTAIPNSIGSKKTRKWHRLIRPWVNHLVACA-CELPLSTALVASD 132 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 P+ A+ L+ L+ + GM PL V ++ AWL Sbjct: 133 ETLMLEPMERTAAVSTLNHLLMAWLHGMQRPLPVAVKTAFAWL--------------GQP 178 Query: 1064 LQKARTKFLQAYEGNMMVR-GEGDD-IWYQRLWRQLTPET-MEAIVEQSQRFLLPLF 1117 KA +AYEG+ GE + R + E + P++ Sbjct: 179 ADKAEAAARKAYEGDGQTTDGERRESTALARQFPDFDALMESEEFAGWCETLYKPIY 235 >UniRef50_B1I494 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Peptococcaceae RepID=ADDB_DESAP Length = 1165 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 107/722 (14%), Positives = 215/722 (29%), Gaps = 149/722 (20%) Query: 86 FNKQSMSWKLMTLL-----PQLLEREDFTLLRHYLTDDSDKRKL-------FQLSSKAAD 133 + + ++W++ + + P + + +L L ++ +L + S A Sbjct: 66 LSFRRLAWRVFSEVGGAARPHVGDVGKRMMLARILARRRNELRLFGRAAGQYGFSGTLAG 125 Query: 134 LFDQ---YLVYRPDWLAQWETGHLVEGLGEAQAWQAPL--WKALV-EYTHQLGQPRWHRA 187 + + YLV P+ L Q ++ G E + QA L + L ++ +L Sbjct: 126 VLSELKTYLVT-PEALEQ--AVRMLPGTAETDSLQAKLEDLRLLYTDFERELAGKYIDPD 182 Query: 188 NLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL---GKHIEIHLLFTNPC 244 + L + T V++ G + P L+AL + + L Sbjct: 183 DYLTLLAARLGESPTLRAA---EVWVDGFAGFTPQEYAVLEALLKAAARVNVALCL---- 235 Query: 245 RYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV-----GNPL 299 DP + + + + R +N +L NP Sbjct: 236 --------DPRSGRREDLELFQVTRDTRARLAELARKNGVELERPVELAGPPARFRANPA 287 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 LA L R++ + F + Sbjct: 288 LA---HLEREFFR--------RPTKKFAGPPEN--------------------------- 309 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 + S + EVE +L L + RD+ ++V ++ Y Sbjct: 310 --------------LRLVAAASRRAEVEGAAREILR-LSRERGWRWRDVSLVVRNLADYH 354 Query: 420 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 + VF +P I +R + HP++E S L + + V L ++ Sbjct: 355 ELVATVFADYG----IPCFIDRKRPVRHHPLVELIRSALETVTENWTYDPVFRYLKTDLV 410 Query: 480 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 539 + L +V GI+ + P + L R Sbjct: 411 PVSRG----DVDLLENYVLAHGIK-------GAKWADPEDWHYRRSDALNR--------P 451 Query: 540 AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 599 + P D L ++ L ++R + + E D+L+ Sbjct: 452 VPNGTGAPAPSDRDRYLREKVNRIRRRAARHLLDFQRRVQAAGTVRELTAALYDLLSDLD 511 Query: 600 LPDAETEAAMTL-IEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG- 657 +P E + E + +A + ++ + L E + +G Sbjct: 512 VPGRIEEWSREAETEGRLEAAREHRQLWDGVVELLDQVVETLGDEALTPEEYGRILDSGM 571 Query: 658 -------------PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-- 702 V + +L R+ + +LG+++GV P + G L + + + Sbjct: 572 DGLQLALIPPALDQVLVGSLERSRNPDIRAAFVLGVSEGVLPGRHGGTG--LFTDREREV 629 Query: 703 ---------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 R + +++YL AL A L++SY + PS ++ L + Sbjct: 630 LLAAGLEVAPDTRRKVYEEQYLVYIALTRAGHYLWVSYPLADE-EGGALAPSSVIPRLRE 688 Query: 754 YI 755 Sbjct: 689 LF 690 >UniRef50_A6LPC3 ATP-dependent helicase/deoxyribonuclease subunit B n=7 Tax=Clostridium RepID=ADDB_CLOB8 Length = 1159 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 98/579 (16%), Positives = 204/579 (35%), Gaps = 69/579 (11%) Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 + I + +IE++ S D SIT + + E+E + + +++ E Sbjct: 276 NAIPYRFKGNLELDHIEKYFFSYPFNEYDKNPESITLYKASNIYDEIERVSKSITSLVRE 335 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLS 459 + RDI V+ +ID Y I +F D +PY + + S+P++ S Sbjct: 336 N-GYRYRDISVVCRNIDDYEKIISVIF----KDYNIPYFLDKKIQLLSNPLIVLISSAFE 390 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + + E V L + I + L ++ E G++ G + + Sbjct: 391 ILLKNWSYESVFKYLKSGLT----GIDNSYIDRLENFILEYGVK-GYKWTSKEIVNEKWF 445 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 + ++L+ ME + + +++ +G + + + + + Sbjct: 446 RGNG-ELTDDKVLIAEIMEEIRYPLMTF--HNKVNGKH-----KVKDICSAIYEFLVDVK 497 Query: 580 QERPLEEWLPVCRDM-LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 + EW+ ++ L ++ E+ + I Q +I E +Y + Sbjct: 498 VFDRINEWIKNFEELGLEDKVKEYSQVESIVIDIIDQAVDVIGE-ERLEYSE------FF 550 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 L+ E I +A VNI + ++ KV+ ++G+NDGV P G L+ Sbjct: 551 RILSSGFANEEIGIIPVALDQVNIGDIARIKGRDVKVLYIVGINDGVLPASKKEEG--LL 608 Query: 698 SQKPK--RGD---------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 S + + G+ R++ +++YL AL + + L +SY + PS+ Sbjct: 609 SDRDRTTLGEVGINLSSTTRNKVFEEQYLLYMALTISSEYLMLSYPMADF-EGKSLRPSI 667 Query: 747 LVQELIDYIGQSHYLPGDEALNCDESE-ARVKAHLTCLHTR-----MPFDPQNYQPGERQ 800 ++ + L E++ ++ A + + FD + +P + Sbjct: 668 VISRIKKIFPNLIEESAIYDLKILENKFGKIIAPIPTFNELIISMRKDFDKEYIEPYWSE 727 Query: 801 SYAREWLPAASQAGKAHSEFVQPLPF-TLPETVPLETLQRFWAH---------------- 843 Y EW + + L + + + V L++ + + Sbjct: 728 VY--EWFKNNDEFRDKVKNIFKGLSYSNIGDKVSKNKLRKLYQNDLEKLVFSVSKLEKYA 785 Query: 844 --PVRAFFQMRLQVNFRTEDS-EIPDTEPFILEGLSRYQ 879 P F Q L+ R PD F+ E L + Sbjct: 786 ECPFSYFVQYGLKAKNRKVYEFTPPDLGSFVHEMLDSFT 824 >UniRef50_B9E0C6 ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Clostridium RepID=ADDB_CLOK1 Length = 1150 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 81/475 (17%), Positives = 163/475 (34%), Gaps = 66/475 (13%) Query: 311 IYLLSDLESSQELDAFVDV---TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPL 367 + L + + +D F+ + + L +++I+ + + F S + L Sbjct: 230 MDALGEYSERESIDLFLPIKITERNILQIAEKNNIIYQKPVNLRCSPCYRFKNSTALQHL 289 Query: 368 DPLDSS------------ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 S I + E++ + ++ D L +D+ V+ D+ Sbjct: 290 QHSLFSYPYKNYEKSTEDINIFKALNKYTEIDYIARDIVKAC-RDKNLRFKDMAVVTGDL 348 Query: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 D Y I+AVF +PY I +R + ++ IS + + + E V L Sbjct: 349 DEYENLIKAVFNQYD----IPYFIDKKREIIHNQIVILIISAVEILAKNWSYESVFRYLK 404 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 +L D+ + + L +V +GIR W F + G Sbjct: 405 TGLL----DLEFDDIDILENYVLANGIR-----------GRQWLDTKPWSFKIN---YGN 446 Query: 536 AMESAQGEWQSVLP-YDESSGLIAELVGHLAS----------LLMQLNIWRRGLAQERPL 584 E E Q L + + E + L++ + +L + L + Sbjct: 447 FKEDDSEEEQEYLNKINCIRDKVREPILKLSNDIKGKKKGRHICEELYNFLCELKIPEKV 506 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQR 644 EE + R+ E ++ I+ +G + + + L Sbjct: 507 EELIIEFRN--TDRLDKANEYSQIWDIVVDVLDQIVDVLGEQSFG----MEIFNEALEIG 560 Query: 645 LDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF------DLM 697 Q I A V + + ++S + + G+NDG++P ++P G D + Sbjct: 561 FSQYEIGVIPPALDQVLVSNITRIKSYNISALYIAGVNDGIFPVTISPEGIFTDQDRDEL 620 Query: 698 SQKPK---RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 Q RSR ++++L L + L ++Y S ++ + PSV++ Sbjct: 621 KQNGLEIAPNTRSRAFEEQFLIYATLTIVDKYLTLTY-SMSDEEGKAKRPSVVIS 674 >UniRef50_D1BPP0 ATP-dependent nuclease subunit B-like protein n=3 Tax=Veillonella RepID=D1BPP0_VEIPT Length = 1185 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 113/617 (18%), Positives = 213/617 (34%), Gaps = 87/617 (14%) Query: 368 DPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG 427 + D +I ++ +RE + + +LA +E RD+ +M+ + ++Y ++ VF Sbjct: 296 NSTDETIPLIRGYNREREADAVARGILAYVESSEEARYRDVCIMLRESETYGDTLEKVFT 355 Query: 428 SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITE 487 +P+ I +R ++HP+ E +L + + + + LL ++ +T Sbjct: 356 RYG----IPHFIDRQRPMKNHPLGELLTALFDIVRHNYSRDSMFLLLKTDLMP----LTR 407 Query: 488 EGLRYLRQWVNESGI---RW---------GIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 E + L +V E GI +W G + E L A + ++ Sbjct: 408 EAVDELENYVLEFGIDHYKWERESWPYLRGFYEGQDEESHLDAPRRARVNKARQTIM--- 464 Query: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 W Y + G G QL L L EW+ Sbjct: 465 ---DVLSPWFDFAAYSD--GHTGAEWG------AQLYGLLETLQVPERLYEWVK------ 507 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 +A + D E++A+ + + I E + + L + L + L S Sbjct: 508 DAETVGDQESKASHEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLEEGLSDVNYSMIPP 567 Query: 656 A-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-----------R 703 + V I T+ S + V ++G+N GV+P+ + G L+ K + Sbjct: 568 SLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEG--LIKDKERQELANAGITLAE 625 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL--IDYIGQSHYL 761 G + ++ +L A+ A L +SY G S +D + PS++V+ L + Y+ Q+ + Sbjct: 626 GALPKAFNENFLLYLAMTRASDSLTLSYAG-SGEDGTGLEPSLVVKRLESLGYVDQTVEI 684 Query: 762 PGDEALNCDESEARVKAH---LTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHS 818 P A + + L F P Y W + + Sbjct: 685 PLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYN--WARESETYRSRLA 742 Query: 819 EFVQPLPFTLPETVPLETLQR--FWAH----------------PVRAFFQMRLQVNFRTE 860 E + + V + L F + P + + Q L++ R Sbjct: 743 EVSRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYGLKLEPRPV 802 Query: 861 DS-EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFR----RFRAAGDLPYGAFGEI 915 S P+ F+ L R + LL + D + + R A L GE Sbjct: 803 RSFGAPEIGTFLHANLER--LGNYLLENNKQWRDLDEEEQANLCRTVADEILQENQLGEE 860 Query: 916 FWETQCQEMQQLADRVI 932 + + ++Q R + Sbjct: 861 TSDAYQKAIEQRVQRTL 877 >UniRef50_Q24WW7 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Desulfitobacterium hafniense RepID=ADDB_DESHY Length = 1220 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 111/571 (19%), Positives = 184/571 (32%), Gaps = 75/571 (13%) Query: 355 IEEFSRSDNKRPLDPLDSS-------ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 +E F + + D S I + + EVE + L L + T RD Sbjct: 288 LERFYNAYPTQTFPGGDDSTAPDPLGIALFPAANKRAEVEGVARE-LRRLAREEGRTWRD 346 Query: 408 IIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 V+ D+ Y I+ VF + +PY + +R HP+LE +S + + Sbjct: 347 CSVVTRDLPGYQGIIEQVFNAHE----IPYFLDHKRPVIHHPLLELLLSAIETVQKDWAY 402 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 E + L F +++ + L + GI N P G Sbjct: 403 EPLFRCLKTDF----FPCSKDRIDRLENYCLAYGIHGSAWKGNRSWSYYPDPNHKEETAG 458 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVG---HLASLLMQLNIWRRGLAQERPL 584 L E+ Q + P+D++ E G +A + + L L Sbjct: 459 LN--------ETRQIIYDLFSPFDQAIRPHPEAGGPSVTVAQITEAIYELLIRLKVPEHL 510 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAE---GLGAQYGDAVPLSLLRDEL 641 +EW D I ++ E GLG + D +++ Sbjct: 511 QEWAEAAHS------RGDLAEAQLQNQIWDAVIQVLDELVAGLGEEVMDLSDFAMILTSG 564 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG-FDLMSQK 700 + L I + V + +L R+ V+ LLG NDG+ P + + G FD + + Sbjct: 565 LENLQLGLIPPGY--DQVLVGSLDRSRNPETAVLFLLGANDGILPGKPSDEGVFDELERL 622 Query: 701 PK---------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 +G ++ +Y AL A+++LYISY + S ++ L Sbjct: 623 RLESKGIMLAPKGKVQVYEE-QYFIYTALTRAREQLYISYPLTDE-EGRGLTVSPVIHRL 680 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSY----AREWL 807 ++ L+ DE E H L Q + G S R W Sbjct: 681 ----KMIFPGLPEKYLSLDEEEPGALPHPYALLPAYALHLQKLRQGSSLSPLWQAIRLWF 736 Query: 808 PAASQAGKAHSEFVQPL-----PFTLPETV-----------PLETLQRFWAHPVRAFFQM 851 + + A + L LP+ + + L+ F P F Q Sbjct: 737 LSQTAAFPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRLVTSVSRLELFARCPFAHFAQY 796 Query: 852 RLQVNFR-TEDSEIPDTEPFILEGLSRYQIN 881 L++ R PD F L Y I Sbjct: 797 GLKLKERSNYRLSPPDMGQFFHAVLHDYAIA 827 >UniRef50_Q1Q1J4 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1J4_9BACT Length = 1099 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 94/567 (16%), Positives = 201/567 (35%), Gaps = 81/567 (14%) Query: 249 GDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLAS----WG 304 DI+ + +++L T + +A + +LA Sbjct: 151 ADIQKLSDISRLFTLFQNTLNASGISHDSNLYRSAAKHAADSEYLRKFKYILAYGFYDLT 210 Query: 305 KLGRDYIY---------LLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 + +D+ L + + + +V ++ L I DI +L + G + Sbjct: 211 GVEQDFFSEIFRYYPTILFLPYKKNHAVFTYVKHFYESFLLGIARDIEDLPPDDLQGFSY 270 Query: 356 EEFSRSDNKR-------PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 + S+ K P P +++ E+ V+ +L ++ + DI Sbjct: 271 LMDADSETKTSLHGESMPDAPSLDNLSIINVSGKHDEIWVIAKEILKLI--NKGYVFGDI 328 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 ++ ++ Y IQ VF + +P+ D+ + +P+ LL L F Sbjct: 329 GIVARELGQYLNIIQEVF----QENAIPFTTLDKEPIEKYPLFTMIKQLLLLDRENFYRP 384 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 V+ +L+ P F+I L+ D + + L + + G+ Sbjct: 385 MVIDILESPY----FNIPVPELK---------------DVLSRQNLWDIISRTNGIHSGI 425 Query: 529 TRML-----LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 L L AM A+ + +LP++ + + L +++ L+ L ++ Sbjct: 426 RCWLSKLEQLKNAM--AEPAEEDILPHNINISCD--QIESLKNIVQLLSNDLLSLQEKAT 481 Query: 584 LEEWLPVCRD--MLNAFFLPDAETEAAMTLIEQQW---QAIIAEGLGAQYGDAVPLSLLR 638 W +C+ + ++ + +I++ + I D + + Sbjct: 482 ---WSQMCQKTKLFLDKYIHIPSEDIDQEIIKRDIFIKERIFCLFDTLSILDRIDKEITY 538 Query: 639 DELAQRLDQERISQRFLAG-----PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 D+ A + AG V + M R IPF+++ L+G+N+ +PR + Sbjct: 539 DQFADTFINACKQEGIQAGTANNKGVRVMNAMSARGIPFRILFLVGLNEKEFPRAIFEEP 598 Query: 694 FDLMSQKPKR------GDRSRR-----DDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742 F + +R G+ +++R LF L +AQ+++Y+ Y RS + + Sbjct: 599 F--LPDHTRRILSEALGNHIPEKLRGFEEERLLFYFLLNAAQERIYLLYE-RSDEAGKPK 655 Query: 743 FPSVLVQELIDYIGQSHYLPGDEALNC 769 PS + +++ I H D+ Sbjct: 656 TPSHYIMDILQNIKGIHTRNEDKENKS 682 >UniRef50_B7JDU3 ATP-dependent helicase/deoxyribonuclease subunit B n=77 Tax=Bacillus RepID=ADDB_BACC0 Length = 1171 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 89/646 (13%), Positives = 207/646 (32%), Gaps = 77/646 (11%) Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDP--LDSSITFHVCHSPQREVEVLHDRLLA 395 I+ I +E + RP + ++S+T H + + EVE + + Sbjct: 274 IEKTIPLMEQPRFHSPALAHLEMHYEARPNEKFHGEASVTIHTAANLRAEVEGVAREI-R 332 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFI 455 L + RDI V++ + +SY ++ +F D +P+ I ++R HP++E Sbjct: 333 RLVAEENYRYRDIAVLLRNGESYYDVMRTLF----TDYNIPHFIDEKRPMSHHPLVECIR 388 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDIT------EEGLRYLRQWVNESGI---RWGI 506 S L + + + V + +L + + E + + G+ RW Sbjct: 389 SALEIISGNWRYDAVFRCVKTELL---YPLDVRKETMREEMDEFENYCLAYGVQGKRWTS 445 Query: 507 DDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIA-------E 559 +D + + G +S + + + + + Sbjct: 446 EDPWMYRRYRSLDDTN-----------GMITDSEREMEEKINRLRDVVRTPVIRMQKRLK 494 Query: 560 LVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAET-EAAMTLIEQQWQA 618 G + + + ++ L + LE + + F D E + + + Sbjct: 495 RAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVE 554 Query: 619 IIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCL 677 ++ E + + LS+ D ++ L+ + + + V I + R K + Sbjct: 555 MLGE-------EKMSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFV 607 Query: 678 LGMNDGVYPRQLAPLGF------DLMSQKPKRGDRSRRD---DDRYLFLEALISAQQKLY 728 +G+N+GV P G D++S + R +++++ + + A +KLY Sbjct: 608 IGVNEGVIPAAPMDEGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLY 667 Query: 729 ISYIGRSIQDNSERFPSVLVQ-------ELIDYIGQSHYLPGDEALNCDESEARVKAHLT 781 IS + S ++ ++ID + + Sbjct: 668 ISCPLADE-EGKTLLASSFIKKIKRMFPDVIDTFITNDVNDLSRSEQISYVATPEVTLSY 726 Query: 782 CLHTRMPFDPQNYQPGERQSYA--REWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQR 839 + + ++ + ++ + K+ + + + Sbjct: 727 VMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRD 786 Query: 840 FWAHPVRA------FFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 + ++ F +F + + + F L+ +L +A +++ Sbjct: 787 LYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIFKLDAPD----IGELFHAALKRI- 841 Query: 894 AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ 939 A+RL R R DL + +E+ L R I Sbjct: 842 ADRLLRENRTWADLSIKECEHLSA-VVIEEIAPLLQRQILLSSNRH 886 >UniRef50_C5RQN7 ATP-dependent nuclease subunit B n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQN7_CLOCL Length = 1151 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 70/392 (17%), Positives = 141/392 (35%), Gaps = 50/392 (12%) Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 E+E + +L + D RDI V+ ++DSY I+A+F +PY I ++ Sbjct: 324 EIEEVAKGILEAV-RDRDFRYRDIAVVTRNLDSYDEMIKAIFNEYN----IPYFIDKKKE 378 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 +S+ ++ S L + + E V L + ++ E + L + +GIR Sbjct: 379 IESNKLIVFLKSALEIISKNWSEEAVFKYLKSDLT----SLSREQVDLLENYALANGIR- 433 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLG---------YAMESAQGEWQSVLPYDESSG 555 + TW + + L G E +L + S Sbjct: 434 ----------GKRKWTKETWDYDFPKELSGGKEKEEILEEINELKAQVVNPLLKLYDISI 483 Query: 556 LIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQ 615 A + + + + + + +E W+ R E LI + Sbjct: 484 SKA----KVKEISKIIFQFLQQVGAFEKIENWIQGFRTEGKQLLA--NEYSQIWNLIIET 537 Query: 616 WQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKV 674 ++ A+ L L+ ++ ++ V + ++ ++ K+ Sbjct: 538 LDMLVEVLGDAEM----SLEEYEKILSIGFEENKMGLIPATIDQVLVGSVERSKTNGVKI 593 Query: 675 VCLLGMNDGVYPRQLAPLGF--D-----LMSQKPKRGD--RSRRDDDRYLFLEALISAQQ 725 + ++G+NDGV+PR ++ G D LM R+ ++++L E +A Sbjct: 594 LYIIGVNDGVFPRSVSDEGILNDEDRTVLMENGITLASTTRAAAFEEQFLVYETFTAASD 653 Query: 726 KLYISYIGRSIQDNSERFPSVLVQELIDYIGQ 757 ++ ISY + PS+LV L + + Sbjct: 654 EIIISYPIADF-EGKALRPSILVSRLKNIFKK 684 >UniRef50_A8FBR0 ATP-dependent helicase/deoxyribonuclease subunit B n=5 Tax=Bacillus RepID=ADDB_BACP2 Length = 1169 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 94/479 (19%), Positives = 166/479 (34%), Gaps = 79/479 (16%) Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDP---LDSSITFHVCHSPQREVEVLHDRLLAMLE 398 I E +R + ++ +RP+ P +T S + E+E + +L ++ Sbjct: 277 IFERNHRHLYTPDLAYLEHQYEQRPVQPYQENTPHLTVSKSASKRAEIEGVARDILDLVR 336 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458 E L RDI V+ +D Y ++ VF +P+ I + Q HP++E S L Sbjct: 337 E-KGLRLRDISVVARHVDDYKDTLKEVFRDYD----IPFFIDGNESMQYHPLIELIRSSL 391 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDIT------EEGLRYLRQWVNESGI---RWGIDDD 509 + + E V + L F + E L + G+ RW Sbjct: 392 DVIKGNWRYEAVFRCVKTEFL---FPLEITKNKAREQADQLENYCIAYGVKGERWTNGSR 448 Query: 510 -NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLL 568 + R + E + ++ I + L Sbjct: 449 FHYRRFQSLDED----------------FRQTDQEIEMEQMLNDVKEWITPPLYQL---- 488 Query: 569 MQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDA------ETEAAMTLIE-----QQWQ 617 ++ L + + + + L +PD E E A L E Q W Sbjct: 489 ------QKRLKNAQKVRDMVEAVYVFLEEIQVPDKLEKARLEAEEAGRLAEAMQHGQVWD 542 Query: 618 AII---AEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFK 673 A+I E + + + L + + L + + + V I ++ R K Sbjct: 543 AVIQLMDEFVDMLGDEELSFPLFQQMIDTGLASLKFALIPPSLDQVFIGSMDLSRMYQVK 602 Query: 674 VVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG-----------DRSRRDDDRYLFLEALIS 722 + ++G+NDGV P + P ++S+ + + R D+++L +AL S Sbjct: 603 CMFIIGVNDGVIPAR--PSDESVLSEDDREWLKRAGAELAETGKERLLDEQFLIYQALSS 660 Query: 723 AQQKLYISYIGRSIQDNSERFPSVLV---QELIDYIGQSHYLPGDEALNCDESEARVKA 778 LY+SY S + PS L+ QEL+ Q+ Y+ E L DE V Sbjct: 661 PSHHLYLSY-AASDAEGRSLLPSPLIKYCQELMPNHQQALYVLDPELLEDDEQLKFVAN 718 >UniRef50_A4IKW6 ATP-dependent helicase/deoxyribonuclease subunit B n=10 Tax=Bacillaceae RepID=ADDB_GEOTN Length = 1167 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 94/522 (18%), Positives = 181/522 (34%), Gaps = 94/522 (18%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLD---SSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 NR + ++RPL P + +I + + + E+E + ++ ++ D Sbjct: 283 NRRHQDKALAHLEEQFHRRPLLPYEAETDAICLYEAANRRAEIEAVAREIIRLV-RDEGA 341 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 RDI +++ ++Y ++ VF D +PY + ++ HP++E + L + Sbjct: 342 RYRDIALIIRQTEAYRDLVKTVF----FDFDIPYFMDEKEPMHYHPLIELVRAALETVVT 397 Query: 464 RFVSEDVLALLDVPVLAARFDITEE------GLRYLRQWVNESGI---------RW---- 504 R+ E V + +L F + + L +V G+ RW Sbjct: 398 RWRYEAVFRAVKTDLL---FPVDGDLAMWREAADKLENYVLAHGVKGEKWTSDERWTYRR 454 Query: 505 -----GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAE 559 G++ E + WR L A + E + D Sbjct: 455 YQALDGLNVPQTDEERQFEDKLNEWREAL-------AAPLRRLERRLRRAADGRG----- 502 Query: 560 LVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQA- 618 L L ++ L + LE+ ++A D A EQ W A Sbjct: 503 -------LCTALYLFLEELQIPKKLEQ--------MSAQAEADGRLVEARQH-EQAWNAV 546 Query: 619 --IIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVV 675 ++ + + + +PL+ + LD+ + A V + L R I K Sbjct: 547 VDLLDQYVEMLGAEPLPLAEFAKIIEAGLDRLEFALVPPAIDQVIVAQLDRSRLIDVKYA 606 Query: 676 CLLGMNDGVYPRQLAPLGFDLMSQKPK-----------RGDRSRRDDDRYLFLEALISAQ 724 ++G+NDGV P ++ G L+++ + G R + D + AL Sbjct: 607 FIIGVNDGVIPAKVKDEG--LVAEVEREQLRELGVALAPGGREQLFYDPFFVYLALACPS 664 Query: 725 QKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ-SHYLPGDEALNCDESEAR-------- 775 ++LY++Y + PS L+++L+ + S +L G++ + E + Sbjct: 665 RRLYVTYPLAD-GEGKALMPSPLIKQLVQLFPRVSVHLCGNDPFDAPEEKPETFVTVPRA 723 Query: 776 ----VKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQA 813 + + L DP + EW QA Sbjct: 724 TQTYLISQLRAWKRNYGIDPLWWDVYNVLISHPEWRARVEQA 765 >UniRef50_A8VW70 Beta-lactamase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VW70_9BACI Length = 1157 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 101/666 (15%), Positives = 207/666 (31%), Gaps = 122/666 (18%) Query: 314 LSDLESSQE----LDAFVD---------VTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 L L S+ E D F + + ++L ++ + E + Sbjct: 231 LDKLPSADEELDPFDLFFETANTAQRTLIAANHLQIGLKPAVHFEERTRFQKKGLRHLEA 290 Query: 361 SDNKRPLDPLDS--SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 N+RP DP D + + + E+ + + L +D V+ + D Y Sbjct: 291 MSNQRPADPSDDHSGVNIVAAVNKRAEIRFIAREI-RRLVRQENYRYKDFAVLSRNPDDY 349 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 I+ +F + +P + +R+ HP++E SLL + + +DV+ L + Sbjct: 350 RDLIEHIF----EEEQIPVFVDAKRSAIHHPLIEFVRSLLDIVSKNWRYDDVIRCLKTEL 405 Query: 479 LAARFDITE-------EGLRYLRQWVNESGIRWGIDDDN--------VRELELPATGQHT 523 F I + + + + +G +W D + E T Sbjct: 406 T---FPIDQSVTREHLDTFENITLALGLNGYQW-YDYEQWNKRLQFYRAAKEGEEDHTIT 461 Query: 524 WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 L ++ M ++ + S + ++ L +LL+ L Sbjct: 462 LMHDLHKI-----MVDPLIQFHDKIT---SQNTVNSIIEALFNLLVAL-----------S 502 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII------AEGLGAQYGDAVPLSLL 637 + E L RD D +Q W+ +I +E G + + + + Sbjct: 503 VPEKLASFRDQ-----ALDKGRLQEARDHDQIWKELISIFDQASEACGQDKMNPITFNNM 557 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 D + + I V ++ R L+G NDGV P F M Sbjct: 558 LDTGLESISYSIIPPAL--DQVVAASMATSRLSDISCTFLIGANDGVIPMPAEESAF--M 613 Query: 698 SQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 S + + + +++YL +A S + +L ISY+ S + + PS+ Sbjct: 614 SDRERVTLLESGHELAPAAERQLLNEQYLVYQAQTSPKDRLIISYL-LSDDEGKAKQPSI 672 Query: 747 L---VQELIDYIGQSHYLPGDEALNCDE-----------SEARVKAHLTCLHTRMPFDPQ 792 + V+E+ + + L+ + +++ + L P Sbjct: 673 ILNHVKEMFPALKTEIAVESPADLDISDEDDYFISSPEGTQSFLTERLQRWKRGYPLPDI 732 Query: 793 NYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE---------TVPLETLQRFWAH 843 + R + P + + P + T + L+++++ Sbjct: 733 WWSVYNWYMSERTYAPTVRTSLTSLFYDNNPGSLSKTAARGLYGQKMTASVSRLEQYYSC 792 Query: 844 PVRAFFQMRLQVNFRTEDSEIPDTEPFILEG-----LSRYQINQQLLNALVEQDDAERLF 898 + F L++ + E F L+ L + + N E L Sbjct: 793 AFKQFANYGLRLR---------EREYFRLDAPDIGILFHDALKELTANLKQEGRSFTELS 843 Query: 899 RRFRAA 904 Sbjct: 844 EPEAVR 849 >UniRef50_A7GAI7 ATP-dependent helicase/deoxyribonuclease subunit B n=15 Tax=Clostridium RepID=ADDB_CLOBL Length = 1150 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 63/365 (17%), Positives = 128/365 (35%), Gaps = 46/365 (12%) Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 E+E ++ + D +DI V+ D++ Y I +VF +P+ I +R Sbjct: 319 EIENTAKDIIKLC-IDKGCRFKDIAVITGDLEGYENIISSVFLQYN----IPFFIDKKRE 373 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 ++P++ +S L + + E V L +L DI E + L +V +GI+ Sbjct: 374 INNNPIIVLILSALEVLSKNWTYESVFRYLKTGLL----DINNEEMDILENYVLANGIK- 428 Query: 505 GIDDDNVRELELPATGQHTWR-FGLTRMLLGY------AMESAQGEWQSVLPYDESSGLI 557 G N + E + + L +L AME ++ D++ Sbjct: 429 GYQWTNDKPWEHKSFSNYELEDQALKELLAKINDIRYKAMEPIVTLNKNFKSIDKAK--- 485 Query: 558 AELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF-FLPDAETEAAMTLIEQQW 616 L + + ++ M+ F + E + I Sbjct: 486 --------EFCEVLYEFLCNINLPDKIQN-------MIEDFKVEGEIEKASEYNQIWNIV 530 Query: 617 QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVV 675 ++ + + + + L L + I V + ++ +RS + Sbjct: 531 MEVLDQIVEVIGEEKISLKEFFKILQTGFSEYEIGLIPPTLDQVMVGSITRLRSHNINTL 590 Query: 676 CLLGMNDGVYPRQLAPLGFDLMSQKPKRGD---------RSRRDDDRYLFLEALISAQQK 726 ++G+NDG++P L G + GD +S ++++L L + + Sbjct: 591 YIVGVNDGIFPSPLKEEGILSDDDREFLGDKGLEIAKDTKSIAFEEQFLVYSTLTTPSKY 650 Query: 727 LYISY 731 L +SY Sbjct: 651 LRLSY 655 >UniRef50_B0KDB8 ATP-dependent helicase/deoxyribonuclease subunit B n=10 Tax=Thermoanaerobacteraceae RepID=ADDB_THEP3 Length = 1149 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 69/405 (17%), Positives = 147/405 (36%), Gaps = 47/405 (11%) Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 EVE ++ ++ D L DI+V D+ Y I+ +F ++ + D + Sbjct: 317 EVEETAREIIRLV-RDENLRYSDIVVTARDLKRYHKLIKTIFSHYGIPHFIDLKL-DIKN 374 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 +P++ SL + + E V L ++ +E + +L +V +GI+ Sbjct: 375 ---NPIIVYITSLFEIYLKNWSYESVFRHLKTGFT----NLNKEDISFLENYVLANGIKG 427 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL 564 G E ++++R L ++ Q E +++ + I+E + Sbjct: 428 G---KWKEEW------KYSFRNRLDKLF------DDQDEKEALEKVNTIKNGISEPLNKF 472 Query: 565 ------ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL--IEQQW 616 A+ + + ER + +++ F + E E A I Sbjct: 473 YKDFSNANTVREACEILYNFLVERDIP---QRIENLIRE-FKENKEFEIANQYSQIWDIV 528 Query: 617 QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVV 675 ++ + + + + + L L + +I A V + ++ M+S K + Sbjct: 529 VDVLDQMVEVMGEEKINIDLFSKILDIGFEAYQIGSIPPALDEVLVTSVDRMKSHNAKAL 588 Query: 676 CLLGMNDGVYPRQLAPLGF------DLMSQKPKRGDRSRR---DDDRYLFLEALISAQQK 726 ++G NDG++P G +++ DR + ++++L AL S + Sbjct: 589 FVIGANDGIFPASSFEEGILTDEDRQILTSYEVELDRDTKAKVFEEQFLVYTALTSTSKF 648 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE 771 L ISY + PS+++ Q ++ DE Sbjct: 649 LRISYPIAD-HEGRSLRPSIIISRFKRIFPQITQFSNVIEMDTDE 692 >UniRef50_UPI00016C0037 ATP-dependent nuclease subunit B n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0037 Length = 1100 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 81/515 (15%), Positives = 170/515 (33%), Gaps = 57/515 (11%) Query: 368 DPLDSS-ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF 426 P DS+ + C + + E+E++ + D T +I ++ +++ Y + V Sbjct: 277 QPRDSANVRLFACRNFESEIELVAQNI-TRFVRDDTYRYNEIAIITGNLNLYRSHLTTVL 335 Query: 427 GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486 G +PY + + + Q++P + ++LL + + +L+ L +L D Sbjct: 336 GQYD----IPYFLDETKTIQANPAVNFILNLLEVITQHWNLTAILSFLKSGILT---DFA 388 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS 546 +E + YL ++ E GI + E E +T + R + ++LG Q Sbjct: 389 DEDIDYLENYLYEHGINYKNKWLEXWEEETDSTLINDLRTRVASIILG--------IEQK 440 Query: 547 VLPYDESSGLIAELVGH-LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAET 605 ++ + ++ + L L+++N W + + Sbjct: 441 IIAHKHRGKILTSNLCRILYDFLVEINFANTI--------RWESKSESEIEHTLSKNFNL 492 Query: 606 EAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTL 664 I Q I+ + V ++ + L E++ + + + Sbjct: 493 ALEYKHIYQTILDILDRLVDILGNQYVNIATFKSILTTCFKHEKVGTIPATQDQILVGEI 552 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--------DLMSQKPKRGDRSRRDDDRYLF 716 R K+V L+G+N+GV+P +L + P + + Sbjct: 553 PRTRLPKQKIVFLIGLNEGVFPANPINDSLFSDMDLTANLFNANPNLYELFIYSNLYGSE 612 Query: 717 LE---ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESE 773 LE LI + L+ SY PS++ L Y P A + Sbjct: 613 LEIYSTLIKPSRYLFASYSMGDD-SGKITRPSIIFTRLKRMFT--MYAPSTTATTFADQI 669 Query: 774 ARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAAS---------------QAGKAHS 818 K + L + + + YA W Q K + Sbjct: 670 YTSKQAIIALGRAIKQNAGIATLDDSYKYALMWYMQHQPDAIVQTVNGLFFTNQQDKLQT 729 Query: 819 EFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRL 853 + + L ++ + + +++F P F + L Sbjct: 730 DIAKKL-YSNNQVTTVSRIEKFRRCPCAYFIEYGL 763 >UniRef50_B6G1B7 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1B7_9CLOT Length = 1158 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 72/443 (16%), Positives = 158/443 (35%), Gaps = 67/443 (15%) Query: 374 ITFHVCHSPQREVE-----VLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGS 428 I + EVE + +D + D +DI + +IDSY ++++F Sbjct: 312 IRIREYSNLYNEVEEVAKEIANDII------DGRYRYKDITIAARNIDSYESLVKSIF-- 363 Query: 429 APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEE 488 ++ +P+ I+ + +++P++ IS+L + R+ E + L +L D TE+ Sbjct: 364 --SEYKIPFYINKKSEAKNNPIITMIISVLEMKKRRYGYETMFRYLKSGLL----DFTED 417 Query: 489 GLRYLRQWVNESGI---RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQ 545 + L +V +GI +W D W + R+ + E Sbjct: 418 EISLLENYVIANGISGNKWFED---------------VWEY---RLPNSFYEYEESEEEL 459 Query: 546 SVLPY-DESSGLIAELVGHLAS--------LLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 ++ + + + + + ++ + E + D+L Sbjct: 460 ETKKRINDIKNRVIAPIKRFDEKLSSKNRKTVEDICRYLYEFLEDINIFEKIENTIDILR 519 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 E+ A + + ++ + + + + L + LD+ + + Sbjct: 520 E--KGMLESAARYSQVWNTVSDLLDQLVEIMGDEKISLERFIRIVNIALDEYELKTIPPS 577 Query: 657 -GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD---------R 706 V + + M + K + L+G DGV+P G S + K D R Sbjct: 578 IDQVTVTEVDRMNNPNTKHLYLIGTVDGVFPMPSKENGLLSDSDRGKLSDMNVELDKDSR 637 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE---LIDYIGQSHYLPG 763 R ++++L +A+ + KL +SY + + S+++ L Y+ Y Sbjct: 638 KRVFEEQFLVYKAITATSDKLTVSYPIAD-SEGKTQRASIIISRIKKLFKYVDIKSYFL- 695 Query: 764 DEALNCDESEARVKAHLTCLHTR 786 E + +E V + + +T Sbjct: 696 -EGVYEEEDLKEVNSKIPTFNTM 717 >UniRef50_UPI00017899D8 ATP-dependent nuclease subunit B n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899D8 Length = 1176 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 76/435 (17%), Positives = 150/435 (34%), Gaps = 66/435 (15%) Query: 374 ITFHVCHSPQREVE-VLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD 432 + H + E+E L + L L ++ R++ V V ++ Y + +F + Sbjct: 325 LLLHAASHRRAEIEGALREML--RLAQEEGARYREMAVFVRNMGDYEHLMGPLF----RE 378 Query: 433 RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFD-ITEEGLR 491 +PY + +R+ HP++E S L + R+ EDV + +L +T E + Sbjct: 379 YGVPYFLDQKRSELHHPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLDGSLTREDMD 438 Query: 492 YLRQWVNESGI---RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVL 548 L V SGI RW D +P ++E + E ++ Sbjct: 439 RLENHVLASGIQGTRW---TDGRPWKGVP----------------SLSLEEGESEIRN-- 477 Query: 549 PYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDA----- 603 + E + + L+ + + + + + +L +P+ Sbjct: 478 ---QDGMAAIEYARKVIT--EPLHAFEKRMKKAASATDQSTAVYRLLEECAVPEKLELLS 532 Query: 604 ---------ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 E + ++ + + + + L L L + +++ Sbjct: 533 RAALDAGRPEEAREHRQVWGAVLGLLDQIVEMMGAEKLSTELFTGVLGTGLTEMKMALVP 592 Query: 655 LA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR------- 706 + V I ++ R+ K LLG+NDGV P Q G ++ DR Sbjct: 593 PSLDQVLIGSMDRTRTGGVKYAFLLGINDGVLPAQFQDDGILTEPERVHLEDRGLELAPS 652 Query: 707 --SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD 764 R D+R+L AL SA ++L++SY + PS E++ ++ L + Sbjct: 653 ISRRLLDERFLIYNALTSASKQLWVSYPAADD-EGKPLLPS----EVVRHLKLMFQLEEE 707 Query: 765 EALNCDESEARVKAH 779 + Sbjct: 708 PLFPRPHAGQSALEQ 722 >UniRef50_UPI0001850BBB ATP-dependent nuclease, subunit B n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850BBB Length = 1158 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 78/448 (17%), Positives = 151/448 (33%), Gaps = 48/448 (10%) Query: 336 HNIQSD--ILELENRAVAGVNIEEFSRSDNKRPLDPLDSS--ITFHVCHSPQREVEVLHD 391 IQ D I+ I R RP P + S +T +P+ E+E + Sbjct: 260 SQIQQDPMIVLDTQARFKSQTIAHLERHWETRPSVPSNESSYVTIVEAANPRAEIEGIAR 319 Query: 392 RLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVL 451 + L + RDI + + + Y I+ +F D +P+ + +R +HP++ Sbjct: 320 EI-RRLAREEGYRYRDIALFLRNSADYGDIIETIF----YDYDIPFFMDQKRTMLNHPLI 374 Query: 452 EAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITE------EGLRYLRQWVNESGIRWG 505 E S L S + E V + +L F + + E + L +V GI+ G Sbjct: 375 ELVRSTLETIHSHWRYEAVFRAVKTDLL---FPLDQSPKKLREKMDRLENYVLAYGIK-G 430 Query: 506 IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA 565 N WR+ R L E + +E I+ + L Sbjct: 431 SSWTNKDR----------WRYRRFRGLELTDSPQTDEEREKEHEINELRLFISAPILRLG 480 Query: 566 SLLMQLNIWRR------GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAI 619 + + N R +E + + L N A E + Sbjct: 481 RRMKRGNTVRDYCISLYQFLEELDIPQKLERFAQSANDRGDVIAAREHDQ--AWNAVVDL 538 Query: 620 IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG-PVNICTLMPMRSIPFKVVCLL 678 + + + + + D L ++ + S + V + L R + ++ Sbjct: 539 LDQYVEILGDSKISVKRFSDILDAGIETMKFSLVPPSNDQVIVADLELSRLANIRAGFVI 598 Query: 679 GMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR---------DDDRYLFLEALISAQQKLYI 729 G+NDGV P + G + +R + +D+ ++ +A + ++LYI Sbjct: 599 GVNDGVLPSKFQDEGILSAEDRTSFANRGVQLAPTSTVKLEDEEFVAYKAFTTPSERLYI 658 Query: 730 SYIGRSIQDNSERFPSVLVQELIDYIGQ 757 SY + + S ++ + + + Sbjct: 659 SYALAND-EGKALMSSPYIKRINELLPN 685 >UniRef50_Q0SWW7 ATP-dependent helicase/deoxyribonuclease subunit B n=9 Tax=Clostridium perfringens RepID=ADDB_CLOPS Length = 1158 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 76/460 (16%), Positives = 172/460 (37%), Gaps = 51/460 (11%) Query: 372 SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPA 431 +S+ + ++ E+E + +L ++ E +DI V+ ++D+Y I A+F A Sbjct: 304 NSLRLYRANNNYDEIEFVAKDILRLVRE-KQYRFKDISVICREVDNYEKVISAIF----A 358 Query: 432 DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGL- 490 + +PY I + S+P++ S + + + E + L ++ I L Sbjct: 359 EYEIPYYIDKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELI 418 Query: 491 RYLRQWVNESGI---RWGIDDDNVRELELPAT---GQHTWRFGLTRMLLGYAMESAQGEW 544 L +V GI +W + N L ++ + L R+ Sbjct: 419 DELENYVLAYGIKGKKWMEEWVNYSSSILKEEEISEEN--KQRLERL---------NDIR 467 Query: 545 QSVL-PYDESSGLIAELVGHLASLLMQLNIWRR-GLAQERPLEEWLPVCRDMLNAFFLPD 602 ++++ P DE + L + L + L +++++ ++ N + Sbjct: 468 ETIVTPLDEF-NKECKGKKTLKEFAIILYEFLDSKLNIMDTIDKYVEYFKE--NDMAIEA 524 Query: 603 AETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNI 661 E + + ++ + + + + L L L Q + +A VNI Sbjct: 525 KEYSE----VRDIFIDVLEQAVDVLGNEVMDLDEFMKVLNIGLSQYEMGLIPVALDQVNI 580 Query: 662 CTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR-----------GDRSRRD 710 + ++S K + ++G+NDGV P G ++S + R++ Sbjct: 581 GDITRIKSRGTKALYIIGVNDGVLPSASKEEG--ILSDNDREILLEKGISLASDTRTKIF 638 Query: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 ++++L A A++ L ++Y + + PS++V L + + + + Sbjct: 639 EEQFLVYTAFTIAEEYLVVTYPLADF-EGKSQRPSIIVHRLKKIL-PNVKEESEGFKLVN 696 Query: 771 ESEARVKAHLTCLHTRMPFDPQNYQP---GERQSYAREWL 807 + ++ A + L+ M +NY + Y +W Sbjct: 697 DKYDKISAKIPTLNELMIAIRKNYDGAEIDDYWKYVYDWY 736 >UniRef50_C0Z546 ATP-dependent nuclease subunit B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z546_BREBN Length = 1165 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 90/559 (16%), Positives = 182/559 (32%), Gaps = 89/559 (15%) Query: 372 SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPA 431 +T + + EVE + +LL L + +D+ +++ +I +Y+ I AVF Sbjct: 306 DEVTMLSAVNRRAEVEAVALKLLT-LSREEGYRWKDMAILLREIGTYADEISAVF----T 360 Query: 432 DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEE--- 488 + +P+ + +R+ HP++E S L + +R+ + V L +L DIT+E Sbjct: 361 EYGIPHFLDQKRSVMHHPLVELVRSALEVIVTRWRYDAVFRCLKTDLLL--LDITDEHTA 418 Query: 489 --GLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS 546 + L +V G+ + W F G A + Sbjct: 419 RKEIDRLENYVLAHGV-----------FGYQWAEESPWHFR------GQAGAEEDAQIDE 461 Query: 547 -----VLPYDESSGLIAELVG-HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 P + + G ++ + + L L LE W + Sbjct: 462 LRRKYAAPLLSFEKEMKQATGLNVQEMTLALYNLLIALDVPNKLEHWQRKAEN------D 515 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPV 659 D + + ++ + + +++ L+ L L+ + A V Sbjct: 516 GDLDAAQVHGQVWTGLIELMDQVVEVMGDESMNLATFARVLDSGLETIELGLVPPALDQV 575 Query: 660 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-----------RGDRSR 708 I + R K + LLG+N+G+ P + G ++ + + + + Sbjct: 576 LIGAMERSRQPDVKALFLLGVNEGIIPLRPKEEG--ILDEAERERLAEMGMSLAPSAKQK 633 Query: 709 RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN 768 + YL +A+ ++L +S + PS + + + + + Sbjct: 634 LMAEPYLLYQAMTRPSERLILSCALADE-EGKALLPSSVFTRIREVLPD----IPHQVFY 688 Query: 769 CDESEARVKAHLTCLHTRMPF------DPQNYQPGERQSY---AREWLPAASQAGKAHSE 819 + + H R F + GE + +W AS K Sbjct: 689 NEPTGQYETDAFLLGHPRRVFRHLLTLLRSMKKTGELPDFWWEVYDWYIRASPDVKREQW 748 Query: 820 FVQPLPF-TLPETVPLET---------------LQRFWAHPVRAFFQMRLQVNFRTEDSE 863 + L + P+ + LET L+RF + P F L R + Sbjct: 749 LLSGLRYFNRPQELDLETSTTLYGKQLKMSVSRLERFQSCPFSHFSSHGL----RLAERT 804 Query: 864 IPDTEPFILEGLSRYQINQ 882 + E F + L + + Sbjct: 805 MYKLERFDVGELFHASLKR 823 >UniRef50_UPI0001692BDC ATP-dependent nuclease, subunit B n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692BDC Length = 1200 Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 74/497 (14%), Positives = 155/497 (31%), Gaps = 93/497 (18%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 + + + EVE +L ++ E RD+ V+V +++ Y I F Sbjct: 320 LQIRAAVNRRAEVEGTAREILHLVREQGA-RWRDVAVLVRNMEEYRELIATTFSDYG--- 375 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA------LL------------- 474 +P+ +R+ HP+ E S L + + E V LL Sbjct: 376 -IPHFFDQKRSVFHHPLSEYLRSALEVISRNWRYEAVFRCVKTDFLLPWPLPVEPDSEGE 434 Query: 475 ----DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 + + + + L L + GI+ G D + + Sbjct: 435 KLLKEREAIREQRRL----LDRLENYALAFGIQ-GRDWTETKPWDK-------------- 475 Query: 531 MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS-LLMQLNIWRRGLAQERPLEEWLP 589 L ++E E + E + + + L ++ +A+ + +++ Sbjct: 476 -LFKVSLEDEDSEV-----VKQRESRELEQLNRTRNQIAEPLLALQKRMARAKTVKQRCE 529 Query: 590 VCRDMLNAFFLPD--------------AETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 +L +P+ E + ++ + + + + L Sbjct: 530 ALYRLLLDTHVPERLESWSMNCVLEGKPEKAREHAQLWDSVIQMLDQMVEMMGEEVLSLD 589 Query: 636 LLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 L + L+ ++ + V + ++ RS K +LG+N+GV P + G Sbjct: 590 LFAKLVDTGLESIQMGLVPPSLDQVLVGSMDRTRSTRIKYAVVLGVNEGVIPAAVPEDGV 649 Query: 695 ------DLMSQKPKR---GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 +L+ G R + D++++ AL +KL +SY + PS Sbjct: 650 LTEPERELLLDSGVPMADGGRRKLLDEQFIIYSALSVPSEKLILSYALADE-EGKSLLPS 708 Query: 746 VLVQELIDYI----------GQSHYLPGDEALNCDESEARVKAHLTCLHT----RMPFDP 791 LV++L + + E L RV ++L Sbjct: 709 ELVKQLRNLFPDVKEELVLTEPGVLMDSAEHLPFLAHPERVLSYLAVQLKQWMRGTAIAS 768 Query: 792 QNYQPGERQSYAREWLP 808 ++ + EW Sbjct: 769 IWWEVYNWFARQPEWRR 785 >UniRef50_B2A611 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=ADDB_NATTJ Length = 1186 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 119/729 (16%), Positives = 236/729 (32%), Gaps = 128/729 (17%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSS---ITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 R + + K ++P DS ++ + + E++ + + +L D + Sbjct: 290 PRFKDNPALAHLEKEWGKNKINPYDSEPTGLSIVEGTNLRNEIDKIAREI-KLLVRDHGM 348 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 +DI V+V +++SY P I+AVF D +P+ + + HP++E S + S Sbjct: 349 RYKDIAVIVRELESYEPVIKAVFN----DYKIPHFLDRKEPVHHHPLVEFLRSSVETVIS 404 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 + E + +L +L I+ E + + +V GI G D + A Sbjct: 405 NWDYEPLFRMLKTGLLP----ISSEEIFQVENYVLAHGIS-GKDWKKQGKWNFIAN---- 455 Query: 524 WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW--------- 574 F L R E+ ++ E + + ++ L +L Sbjct: 456 --FDLER-------ENIAPSNRNKQYLSEINSIKGKVRDTLLEFDSKLRGINKSESLSAQ 506 Query: 575 -------RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAA--------MTLIEQQWQ-- 617 L R + +L + L + + + A M L Q W Sbjct: 507 FKNQEAEEDNLLSVREISTYLWELIEQLQIEYQLEEWSLEAEERKDFVEMQLHNQLWDTV 566 Query: 618 -AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVV 675 ++ + + V LS + L ++ V + T R KV+ Sbjct: 567 IDLLDQMVTFLGEQKVTLSEYLQIIESGLANIKLGLLPATLDQVLVGTADRSRYHEIKVL 626 Query: 676 CLLGMNDGVYPRQLAPLGFDLMSQK--PKRGD-------RSRRDDDRYLFLEALISAQQK 726 + G++DG+YP ++ G ++ ++ D + ++YL L QK Sbjct: 627 FMAGVSDGLYPAKIDDDGIIDDRERITLRQHDVEFAPTTEQKLYQEQYLIYNVLTQPSQK 686 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES------------EA 774 LY+SY + PS ++ ++ + + ++ DE Sbjct: 687 LYLSYPAAD-SEGRTMSPSTIISDIQEMFPELFQEYQNDGPENDEDFRQYIIDGKKAVSN 745 Query: 775 RVKAHLTCLHT------RMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTL 828 +K H + Y+ + A + + Sbjct: 746 LIKLINKVGHPEKLAEDKQQLLAYLINEHPDLFYSTPEIKALDYKKSLSPLTQEVIDKLY 805 Query: 829 PETV--PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFIL-------------- 872 P + + L+ F P R F + L++ R EP L Sbjct: 806 PNKIATSVSGLESFCQCPFRHFAEQNLRLKEREYFRL----EPASLGLFYHAGLKLFWDK 861 Query: 873 ---EGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLP---YGAFGEIFWETQCQEMQQ 926 L+ +++ + ALV + E L R + L Y F + E + ++ Sbjct: 862 LQENNLTWHKLKTEEREALVSEI-VEVLSERLKNRILLASERYKYFKKKLHELLSRAVEV 920 Query: 927 L-------------ADRVIACRQPGQSMEIDLAC---NGVQITGWLPQV---QPDGLLRW 967 L ++ +P ++E++L VQ+ G + ++ + DG L Sbjct: 921 LSWYSDDKGFYPVGSEIGFGKDEPLSTLELELPSFPNKKVQLKGRIDRIDTGKKDGDLYL 980 Query: 968 RPSLLSVAQ 976 R Sbjct: 981 RVIDYKGKS 989 >UniRef50_B6FV68 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV68_9CLOT Length = 1134 Score = 96.2 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 70/464 (15%), Positives = 160/464 (34%), Gaps = 56/464 (12%) Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 I R ++ D I + +P+ EV+ ++ L Sbjct: 279 IYRFRENTALAFLEAHLFRYSKEQYEKEQDC-IQVYCAKNPKEEVDFAAQKI-RNLARTR 336 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 R+I ++ +D+++Y I+ +FG + +P + +R+ + +E SLL++ Sbjct: 337 GYRYREIAIIASDLNTYGNQIEKIFG----EYQIPIFMDHKRSILLNSFVEYVRSLLAMV 392 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN----VRELELP 517 + F E V L + ++E + + +V GIR G R + Sbjct: 393 EQNFSYESVFRYLRTGLT----GFSDEEIDIVENYVIALGIR-GYKKWQEKWIRRARGME 447 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 T L R+ + + ++ ++ + ++ + ++ + L + Sbjct: 448 ETE-------LERI------NDIKERF--LIQVEDVTMVLTKRNKTVSEVTKALYDFLVK 492 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 ++ ++E+ + + + E ++ + + + Q + L Sbjct: 493 EELQKKVKEYEIRFGN--DGELALEKEYGQVYRIVIELFDKFVELLGEEQ----IALKEY 546 Query: 638 RDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 + L L++ ++ + V + R K V LLG ND P + G + Sbjct: 547 CELLDAGLEEAKVGVIPPSLDQVVAGDIERTRIKDIKAVFLLGANDMYIPGKENAGG--I 604 Query: 697 MSQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 +S+ + G + + ++ + ++LY++Y S D P+ Sbjct: 605 LSEHDRELFQKGGVVLAPGAKEKAFIQKFYLYLLMTKPSEQLYVTYSKVSA-DGKTLRPA 663 Query: 746 VLVQELIDY-----IGQSHYLPGDEALNCDESEARVKAHLTCLH 784 L+Q+L I + P + L A + L H Sbjct: 664 YLIQDLRRMYKKMEIQDADCQPDKKELTPKSGFAYLIEKLQKKH 707 >UniRef50_B8I2Y3 ATP-dependent helicase/deoxyribonuclease subunit B n=5 Tax=Clostridium RepID=ADDB_CLOCE Length = 1149 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 60/387 (15%), Positives = 120/387 (31%), Gaps = 46/387 (11%) Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 E+E ++ D + +DI V ++ Y I +F +P I + Sbjct: 320 EIEECARDIIKQC-RDNGMQFKDITVATRNLTGYENLIGVIFEQYN----IPCFIDSKTE 374 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 +HP++ +S+L + + E V L + I + L +V GIR Sbjct: 375 ITNHPLVRMVLSMLEIFTENWSYESVFRYLKSGLT----GIDNTKIDILENYVLACGIR- 429 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL 564 G + + + ++ + E+ L Sbjct: 430 GSRWTQEADWNTSIEFR----------------PDDGQKPENDEMLLNINKTRNEIREPL 473 Query: 565 ASLLMQLNIWRRGLAQERPLEEWL------PVCRDMLNAFFLPDAETEA-AMTLIEQQWQ 617 + R + E+L R+ + F A + Sbjct: 474 IRFRNRTKGRRTAGDFCAGIYEYLVEIGVEQRIRNYIEKFTQSGQLRLAGEYQQVWNILM 533 Query: 618 AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVC 676 + + + + L + L + +IS + V + ++ +RS K + Sbjct: 534 DVFDQAVEVMADETFGLEKFANVFKIGLAEYKISSIPASLDQVLVGSIEHIRSHEIKALY 593 Query: 677 LLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS----------RRDDDRYLFLEALISAQQK 726 +LG NDGV+P G L + D+ R D++YL L + + Sbjct: 594 ILGTNDGVFPSAGMSEGV-LSDADREVLDKRGIELASDTKTRAFDEQYLIYRTLTTPKNY 652 Query: 727 LYISYIGRSIQDNSERFPSVLVQELID 753 L +S+ + PS ++ + Sbjct: 653 LRLSWPIAD-HEGRTMRPSTIISRMRK 678 >UniRef50_D2LU04 ATP-dependent nuclease subunit B n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LU04_BACS4 Length = 1171 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 82/485 (16%), Positives = 167/485 (34%), Gaps = 91/485 (18%) Query: 322 ELDAFVDVTPDNLLHNIQSD------------ILE--LENRAVAGVNIEEFSRSDNKRPL 367 ELD F + IQ+ IL+ L ++ A ++E+ Sbjct: 250 ELDLFFETAKS--YQTIQNVCREHNLEVNRPFILQMSLRFKSKAIAHLEKNYEIRPSPVY 307 Query: 368 DPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG 427 + D H + EVE + +L ++ D + ++I++++ +I Y+ +Q VF Sbjct: 308 ETNDGIRVISAVH-RRSEVEGIAREILHLV-RDKSYRFQEIVLILRNITDYTDLLQTVF- 364 Query: 428 SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITE 487 D +P + +R+ +HPV+E S L + + E V L +L F + E Sbjct: 365 ---EDYGIPLFMDQKRSMLNHPVIEFIRSSLEVIYGNWRYEAVFRCLKTDML---FPL-E 417 Query: 488 EGLRYLRQWVNES----------GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + +R+ V++ G+RW + W + R Sbjct: 418 SHVSEMRERVDQLENYVLSYGIKGVRW--------------YDKKPWSY--RR-----VK 456 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML-- 595 SA GE + DE I +L L L ++ + + + E L Sbjct: 457 TSADGERKRTTAEDEFEQEINQLRN---ELTKPLIWLQKQMKASKTVTEKCETIYHYLVM 513 Query: 596 ------------NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQ 643 ++ + + + ++ + + + V L + + Sbjct: 514 CQIPEKIERMRNDSVASEELQRAKEHDQVWSAIVELLDQMVEMAGDEDVSSELYKKMIDT 573 Query: 644 RLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF------DL 696 ++ + + A V + + R + +LG+NDG+ P + D Sbjct: 574 GVESMKFAIIPPAIDQVIVADMEHSRLSNIRCAFILGVNDGIIPAKPDEGSIVTEEERDT 633 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALI------SAQQKLYISYIGRSIQDNSERFPSVLVQE 750 ++Q S R L E + +A + LY +Y + PS++++ Sbjct: 634 LAQAGINLAPSST---RQLLNETFLMYLAQSTASELLYFTYPLADE-EGKSLQPSIVLKR 689 Query: 751 LIDYI 755 + D+ Sbjct: 690 IKDFF 694 >UniRef50_C6LH76 ATP-dependent nuclease subunit B n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH76_9FIRM Length = 1162 Score = 93.1 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 107/550 (19%), Positives = 179/550 (32%), Gaps = 77/550 (14%) Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDS-SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 R+ EE +RS P +I+ H +P +E + A+L + + Sbjct: 312 RSANPHTAEETARSGEAEPECASSGCAISLHTAANPVQEAHFAARTIRALLRQ--GYRYQ 369 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 DI V+V D+ SYS +I VFG + + Y + R S+P++E ++L + F Sbjct: 370 DIAVIVGDLPSYSSYIPQVFG----EYKIAYFMDSTRTVFSNPLVEFLRAVLDMIQQDFT 425 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 V L + I + L L +V +G+R G WR Sbjct: 426 CASVFRYLRTGLCR----IDAQKLDMLENYVLAAGVR-GFSR---------------WRE 465 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE----R 582 TR ++ L + ++ L L+ + R ++ Sbjct: 466 PFTR----------AVDFLDEEQLALCEELRSLIMEPLLPLVSCMRQARTTAREKTEGLH 515 Query: 583 PL---EEWLPVCRDMLNAF-FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 L DM F AE E I I + +A+ L Sbjct: 516 TLLCHYNIQQQLADMEKQFRADGQAELEKEFAGIYAMVIGIFDKLAELLREEALTLQEYT 575 Query: 639 DELAQRLDQERISQ-RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--- 694 + L ++ R+ A V + L R KV+ LG+NDG P A G Sbjct: 576 ELLEAGFEEARVRLIPPSADRVQVGDLERSRLTDIKVLIFLGLNDGWVPATGAGGGLLSD 635 Query: 695 ----DLMSQKPKRGDRSRRD---DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 LM + + +R++ YL+L L +++LY+S + D S PS + Sbjct: 636 MERETLMESRVELAPTTRQNSYIQRFYLYLN-LTKPRERLYLSCSKATA-DGSLLRPSYV 693 Query: 748 VQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPF-DPQNYQPGERQSYAREW 806 ++ + D + + L L F + QP W Sbjct: 694 MRTIGRLFPGLSVHDEDVCESFSSRVETPQNALAYL--LEGFWSIRERQPSGEWLELYNW 751 Query: 807 LPAASQAGKAHSEFVQPLPFTLPET----------------VPLETLQRFWAHPVRAFFQ 850 K V+ T E+ + L++F + F Q Sbjct: 752 YRRKEDTKKQVQRLVEAAFLTFDESGIGRKAARELYGEVLVNSVSRLEKFASCAFAHFLQ 811 Query: 851 MRLQVNFRTE 860 L++ R E Sbjct: 812 YGLRLQEREE 821 >UniRef50_C4Z990 AddB n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z990_EUBR3 Length = 1156 Score = 93.1 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 72/368 (19%), Positives = 129/368 (35%), Gaps = 47/368 (12%) Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFIS 456 L + L RDI ++ D++ Y+ +++ +F +PY I + HP +E S Sbjct: 330 LVRNENLRYRDIAIVTGDVNIYAGYVREIFDKYN----IPYFIDATQEILFHPFIEFIRS 385 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 + + F ++ V L +++ + L +V G+R G + + + L Sbjct: 386 IPDIAAQNFSADAVFRFLRCGFT----ELSASEIDVLENYVLACGVR-GKSAWDKKWVRL 440 Query: 517 PATGQHTWRFGLTRMLLG----YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 P + G LL Y ME + +Q + + L LL Sbjct: 441 PKH-----KAGYDIELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIVLLDI-- 493 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 L + D + E ++ Q ++ +A LG + DA Sbjct: 494 --------PDKLAKKEQALLDAGDQ--TASKEYGQIYKIVMQLFEKYVA-VLGDECMDAE 542 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 + + D D I + V I + R KV+ G+NDG+ P+ Sbjct: 543 EFTQILDAGLDAADVAVIPPGYDT--VTIGDIERTRLTNIKVMFFAGVNDGIVPKAAGRG 600 Query: 693 GFDLMSQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSE 741 G ++SQ + G R + R+ + ++LYISY R + Sbjct: 601 G--IISQYEREALKELDIELAPGAREQAFIQRFYLYLNMTKPSRELYISYT-RLDSEKKA 657 Query: 742 RFPSVLVQ 749 PS L+ Sbjct: 658 AQPSYLIG 665 >UniRef50_B0PD61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PD61_9FIRM Length = 1106 Score = 92.3 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 113/628 (17%), Positives = 200/628 (31%), Gaps = 67/628 (10%) Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 I + + P D + C E+E + + A++ E RDI ++ Sbjct: 279 IAQAYPQETPAPYDGAPDGVQIAACEDVYDEIEYIAGEICALVRE-KGYRYRDIALIGRA 337 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 ++ Y ++ VF +PY R Q HP++ L RF SE VLAL Sbjct: 338 LEPYLVPLETVFARYD----IPYFADRRVDIQVHPLVNGIFCALDAVRGRFDSEAVLALA 393 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 ++ I L + WG+ + + G Sbjct: 394 KT-CIS---GIDAVEAGLLENY----CFTWGVSGTVWAAPFVNHPDG----------MEG 435 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 A Q E + A L+G L L L G R + +L Sbjct: 436 -AFSDEQRER-----LSRINAARAALIGPLERLADSLRG-CDGRGFARAIYSYLEQVDAA 488 Query: 595 --LNAFFL--PDAETEAAMTLIEQQWQAIIAEGL---GAQYGDAVPLSLLRDELAQRLDQ 647 L + + + + L Q W A+I GA G ++PL+ L D L + Sbjct: 489 CRLRDYAEGMEEGDARRFLDLSAQVWDAVIGLLDVFGGALAGISLPLARLTDLLRLGVST 548 Query: 648 ERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG-- 704 I V T +R + V ++G+N+GV+P +P G +++ + Sbjct: 549 VDIGSLPQTIDQVIAGTADRIRPNAPRAVFVIGLNEGVFPLWSSPSGIFSAAERERLRTQ 608 Query: 705 --DRSRRDD-----DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ 757 D R + +RY AL A + L+++Y R + R S V E+ +G Sbjct: 609 GVDLLRTPEQTALFERYYVYFALTQASEALWLTYPLRDAA-GAARTASSAVDEVRALVGA 667 Query: 758 ----SHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQA 813 S A + + H + + A +A Sbjct: 668 PARGSAGGALARAAGERSAFDAMMRHWRDDTPETAVLRSYFTEQDPARIRTLEALGAPRA 727 Query: 814 GKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP----DTEP 869 F + + ++ P F ++ L++ R P Sbjct: 728 FSLEGRGAARALFGTRMRISPSRAELYYECPFSYFCRVGLRLRPRRRAEFNPIESGSLIH 787 Query: 870 FILEGL-SRY------QINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQ 922 +LE + +Y Q+N +LL + + L R ++P F + Sbjct: 788 LVLEKIVKKYGGRGLAQLNGELLRSEITAIIDADLKARIANYDEMP-ARFKY-LFRRLVG 845 Query: 923 EMQQLADRVIAC--RQPGQSMEIDLACN 948 +Q+L +R+ + + +L Sbjct: 846 TIQRLIERLALEFGQSAFEPAAFELPIG 873 >UniRef50_Q2RL78 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=ADDB_MOOTA Length = 1151 Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 119/665 (17%), Positives = 209/665 (31%), Gaps = 79/665 (11%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDP--LDSS-ITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 R + + PL P D++ I + + EVE +L L + L Sbjct: 283 PRFREAPALAHLEAHFGRWPLRPFRGDAAGIRLVAAANRRVEVEAAAREILR-LAREENL 341 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 + R + V+V D++ Y I F D +P I RR HP++E + L Sbjct: 342 SWRQMAVLVRDLEPYHDLIVNTF----RDFNIPLFIDRRRPVGHHPLVELVRAALEAVLE 397 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 + + V L ++ + E + L +V GIR P Sbjct: 398 DWAYDPVFRYLKSDLVP----VPREEIDLLENYVLAHGIR-----GRRWRDSRP------ 442 Query: 524 WRFGLTRMLL-----GYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 W++G +R L G A + A L ++ L Sbjct: 443 WQYGNSRDLETPSPPGSAAGETINAIRERASCHLRRFDGALRGRQLTG--REITAALFDL 500 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 QE + E L A DA E I + ++ E + A ++ L Sbjct: 501 LQELGVPERLAAWSRQAAAAGDLDAAQEHEQ--IWEGLMDLLEELVLALGDTSLELEEYA 558 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYP-RQLAPLGFDL 696 L L+ ++ A V TL R + +LG+ +GV P R F Sbjct: 559 AILDTGLESLKLRLIPPALDQVVAGTLDRSRQPELQAAFVLGVGEGVLPARLPEDATFSD 618 Query: 697 MSQKPKRGD--------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748 ++ R R + +L AL +++ L++SY + PS LV Sbjct: 619 REREELRAAGLELAPTGTLRLFHEEFLAYLALTRSRRYLWLSYPLADA-EGKALSPSPLV 677 Query: 749 QELIDYI------GQSHYLPGDEAL-----NCDESEARVKAHLTCLHTRMPFDPQNYQPG 797 + L + LPG + ++ + L P + Y+ Sbjct: 678 RRLRQLLPGLREETAGTELPGGDDDLVYLTTPRQAAGHLARLLGRGRPLPPLWQEVYRWL 737 Query: 798 ERQSYAREWLPAASQAGKAHSEFVQPLP-----FTLPETVPLETLQRFWAHPVRAFFQMR 852 + + ++ L G + + P + + L+ F P R F Sbjct: 738 HQDARGQKMLGLLEGGGYRNQVDPLEPELARGLYPRPLRLSISQLETFAGCPFRYFLSYG 797 Query: 853 LQVNFRTEDSEIPD-------------TEPFILEGLSRYQINQQLLNALVEQ--DDAERL 897 L + R P E GL +++ A++ Q D Sbjct: 798 LGLQERRLYQVDPAGMGQFYHAALKLFVEELGRRGLDWGRLSDNEAAAIISQVVDSLAPA 857 Query: 898 FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLP 957 + + YG + +T + M+ L + R + + ++ + G LP Sbjct: 858 LQHEILSSSARYGYLRKKLEQTLQRVMEVLNEHAR--RGEFRPLAVETSFGC---RGKLP 912 Query: 958 QVQPD 962 +Q D Sbjct: 913 PLQLD 917 >UniRef50_C9LTM7 ATP-dependent nuclease subunit B n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LTM7_9FIRM Length = 1151 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 77/495 (15%), Positives = 148/495 (29%), Gaps = 72/495 (14%) Query: 306 LGRDYIYLLSDLESSQELDAFVDVT------PDNLLHNIQSDILELENRAVAGVNIEEFS 359 R + L + + D T + L Q+ L+ R + I Sbjct: 218 QERKILAALFQKAKNVHITLTFDPTDEAAMQREGSLFYRQAQTLQQLRRLAQEMQIPVRV 277 Query: 360 RSDNKRPLDPLDS--------------------SITFHVCHSPQREVEVLHDRLLAMLEE 399 RS +R D+ + + + E+E ++ + E Sbjct: 278 RSLEERRRFQSDALAAIERTAFSFPLVPQAGAAGVALVEAATRRLEMEAAAADIVRLCRE 337 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLS 459 L RDI ++ D +Y + D +PY ++R HP+ E S Sbjct: 338 -KGLRWRDIAILTRDEAAYGDML----ALTLEDCGIPYFRDNKREGVHHPLAELVRSAFE 392 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR---WGIDDD---NVRE 513 + + + + L F T + L +V E GIR W +++D + R Sbjct: 393 VLRG-WRYDAMFRALKTGF----FKKTRGQIDLLENYVLEFGIRGSSWTMEEDWHWHRRR 447 Query: 514 LELPATGQHTWRFGLTRML-LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 L + + R+ + + Q + + L Sbjct: 448 -SLDEEEEGATQKEAERLCQINSCRRAVAEPLQEFAA-------QVKAASTVRGYAEALY 499 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 L + LE W I +++ + + + Sbjct: 500 RLLLALDVPQTLERWADEAEK------AGRLAESREHRQIWDDVISLLEQMAETSGDETI 553 Query: 633 PLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + D L LD +IS V + + + +LG N+GV PR+ Sbjct: 554 KVREFEDVLGDGLDALQISLIPPGLDYVTVADFDQNSVENARAIYILGANEGVMPRRSQE 613 Query: 692 LGFDLMSQKPKR-----------GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS 740 G L+S + G ++R+L + A+ L++SY + Sbjct: 614 KG--LLSDADRLHLKEAGLELPQGSVEGSFNERFLLYKGFTEARDYLWVSYALAD-TEGK 670 Query: 741 ERFPSVLVQELIDYI 755 P+ L+ ++ + Sbjct: 671 ALLPASLLGQIRTVL 685 >UniRef50_B1C9D7 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9D7_9FIRM Length = 1111 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 82/507 (16%), Positives = 173/507 (34%), Gaps = 92/507 (18%) Query: 309 DYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD 368 D +Y L L + + + ++ ++ + DI L + + +N Sbjct: 247 DTLYKLKKLAENNDEEVVTEIDKED---EKEKDIKFLADNIFSYDTKTFDDEINN----- 298 Query: 369 PLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGS 428 I + EVE+ +L +++E+ +DI V+ +D D+Y I F Sbjct: 299 -----IEIFKASTIYEEVEMTALNILKLIKEENA-DFKDIQVLPSDYDTYKEIISETF-- 350 Query: 429 APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEE 488 + + + + + +L + +L++ + F + D+++ L + D+++ Sbjct: 351 --KKHNISFFLDNTTSIMDTNILRGILKILNIVEGNFKTHDIISFLKTGLT----DLSKT 404 Query: 489 GLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT-WRFGLTRMLLGYAMESAQGEWQSV 547 + + E GI + T W R + E+ Sbjct: 405 DIETFENYALEFGI------------------KGTMWTADFKR-------NNPDNEYD-- 437 Query: 548 LPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF--------- 598 +A L L++ L R L + ++E + D L F Sbjct: 438 ---------LAYLNEKKDELMLPLITLRNDLKDKTSVKEITNIFYDFLEEFGLYEKIITL 488 Query: 599 -----FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 + D E I + + + + LS L + +I Sbjct: 489 VNKFKYKEDFENANKYAQIHNSIITALEQIYDFLGNEELSLSEYTKVLESGFNALKIGII 548 Query: 654 FLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS----- 707 VNI +L RS K + +LG+NDGV P + S K K + Sbjct: 549 PSTIDSVNIASLSRSRSSEIKYLFILGVNDGVLP-SNFSNSGGIFSNKEKLKAINEGINL 607 Query: 708 ------RRDDDRYLFLEALISAQQKLYISY--IGRSIQDNSERFPSVLVQELIDYIGQSH 759 + D++RY ++ ++K+++SY G + E PS ++ ++ D + + Sbjct: 608 RTTEQYKIDEERYFLTSVILKTEKKIFLSYPITG---SNGDELLPSSIIFKIQDTMPKLK 664 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTR 786 D+ N +++ + + + Sbjct: 665 VKTLDKN-NFEDNLSLISNYEATFKYL 690 >UniRef50_C0FS44 Putative uncharacterized protein n=2 Tax=Roseburia RepID=C0FS44_9FIRM Length = 1143 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 86/528 (16%), Positives = 172/528 (32%), Gaps = 79/528 (14%) Query: 372 SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPA 431 + +P+ E+ + + + +DI V+ D+ Y ++ +F + Sbjct: 308 DELRIVSLKNPREELHFVAREITK-FVREKQYCYKDIAVVTGDVSLYDNYVDEIFAAYD- 365 Query: 432 DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLR 491 +PY + R HP +E ++L + + F E V L + DITE+ + Sbjct: 366 ---IPYFLDQTRTILFHPFIEFIRAVLEVVELDFSYESVFRFLRCGLT----DITEQQID 418 Query: 492 YLRQWVNESGIR--------WGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE 543 L +V GIR W D+ + L + + + G+ ++ Sbjct: 419 LLENYVLAKGIRGRKKWEKQWTFVFDDTEKENLTEMNE------VREKIYGFFAPLSEAF 472 Query: 544 WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDA 603 Q DE++ L L+ +L I ++ +E E + Sbjct: 473 TQGKTVRDETT--------VLYELIEKLEIEQKLKQKELEFERQGNQVKA---------K 515 Query: 604 ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG-PVNIC 662 E ++ + ++ + +P+ D L + R+ V I Sbjct: 516 EYAQIYKIVMDLFDKVVDFLG----DEVLPVKEYADILDAGFEAARVGVIPPGNDKVTIG 571 Query: 663 TLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-----------RGDRSRRDD 711 + R K++ +G+NDGV P+ G ++SQ + G R + Sbjct: 572 DIERTRLNHIKILFFIGVNDGVVPKAGNAGG--IISQFEREKMVACHLELAPGAREKVFI 629 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE 771 R+ + LY+++ + D S V L+ + +E + D Sbjct: 630 QRFYLYLNVTKPSDFLYVTFSKVNA-DGKALRRSYFVGTLLKMFPEKTVEEIEETTSADC 688 Query: 772 SEARVKAHLTCLHTRMPFDP--QNYQPGERQSYAR---------EWLPAASQAGKAHSEF 820 + L D Q +R+ + EW P + K E Sbjct: 689 IMTPKSSMAFFLEGLQDDDRASDFSQVEKRKLWNALSKFYLTDSEWKPETEKLLKTAYEV 748 Query: 821 --VQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRT 859 +P+ + + + + L+RF A + L++ R Sbjct: 749 HSDEPISHAVTQALYGTVLENSVTRLERFAACAYAHYLNYGLRLKERQ 796 >UniRef50_B8DF43 ATP-dependent helicase/deoxyribonuclease subunit B n=16 Tax=Listeria monocytogenes RepID=ADDB_LISMH Length = 1157 Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 81/536 (15%), Positives = 169/536 (31%), Gaps = 72/536 (13%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 + H ++ + E+E + + ++ RDI ++ ++ Y + V Sbjct: 303 LKIHQANNRRAEIEGIAREIRQLVLN--GYRYRDIAILTRNLGDYDVLCETV----MEAY 356 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP---VLAARFDITEEGL 490 +P I +RA HP +E S L + E + + + + + Sbjct: 357 NIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKA 416 Query: 491 RYLRQWVNESGIR--WGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVL 548 L +V E+GI+ W + + W + R L + E Sbjct: 417 DILENYVLENGIQNKWKWEKE------------GDWVYRKIRGLSTNVLPQTDEEIHMQS 464 Query: 549 PYDESSGLIAELVGHL----------ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 +E LI + L + L + + LE W + + Sbjct: 465 IINEMRSLIVNPLATLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEE--QGY 522 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-G 657 E E A + I A++ E + + + L + + LD S + Sbjct: 523 LELAREHEQAWSSI----SALLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLD 578 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLA-------PLGFDLMSQ--KPKRGDRSR 708 V + + + + KV+ +GMNDGV P + L ++ K K ++ Sbjct: 579 QVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNN 638 Query: 709 RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV-------QELID--YIGQSH 759 ++ L + + KL++SY + S + EL + Y+ Sbjct: 639 IGEEDLLAYKIISLPSDKLFLSYPAADE-EGKVLSESNYLRKIKGQFNELNESVYLTDPS 697 Query: 760 YLPGDEALNCDESEAR----VKAHLTCLHTRMPFDP-------QNYQPGERQSYAREWLP 808 L E + S+ + + L ++ + A++ L Sbjct: 698 LLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLS 757 Query: 809 AASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 + K ET+ + +++F++ + + Q L++ R Sbjct: 758 SLYYENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQ 813 >UniRef50_B0NWV1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NWV1_9CLOT Length = 1126 Score = 89.2 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 81/454 (17%), Positives = 156/454 (34%), Gaps = 80/454 (17%) Query: 368 DPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG 427 +P D I +P++E + + + + +DI+V+ AD+DSY ++ F Sbjct: 308 EPED--IKIRCFMNPRQESRTVANEI-ERFVREEGYRYKDIVVLTADLDSYQNELEKSF- 363 Query: 428 SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF-DIT 486 D ++PY + R ++P +E +S+L + F + V L F + T Sbjct: 364 ---DDLHIPYFVDVNRKLLNNPCIETLLSVLKMIQKDFSYDMVFRYLKS-----GFSNFT 415 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS 546 E +L +V GIR G R + S Sbjct: 416 MEEADFLENYVLACGIR-----------------------GFARW---------NRPFAS 443 Query: 547 VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE-RPLEEWLPVCRDMLNAF------- 598 L DE G L + ++ + GL + ++ L + L Sbjct: 444 KLFSDEDVGRAEALR---IRFIEEVGTLKTGLKRRGSTVKRKLIYLYEFLETLDVEGKMV 500 Query: 599 -----FLPDAETEAAMTLIE--QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 F + AA T + +Q ++ + + + L L++ +I Sbjct: 501 KKQEMFEASGDLIAAATYAKVYEQVIDLLEQMAEILGEEKLSYDDFLSVLESGLEEMQIG 560 Query: 652 QRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-------- 702 + V I + R+ K++ LG+N+GV P G +++ + Sbjct: 561 VIPPSLDQVMIGDMKRTRTEEVKILFFLGINEGVIPAANGGGG--VVNDHQREVLETYGI 618 Query: 703 ---RG-DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 G +S + YL+L + +LY+SY N+ R PS ++ + + Sbjct: 619 NLAPGIKQSAYMEQFYLYL-TVSKPTDRLYLSYRMMDAAGNNNR-PSYFIERIQRIFPKL 676 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ 792 +E + ++ + M FD + Sbjct: 677 KVTMQEEEVQTGYTKEEALDQMILCLQEMEFDER 710 >UniRef50_C7GAA1 ATP-dependent nuclease n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAA1_9FIRM Length = 857 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 69/434 (15%), Positives = 133/434 (30%), Gaps = 87/434 (20%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 I +P+ E++ ++ + E+ RDI V+ D+ Y ++ +F Sbjct: 315 IRITSLKNPREELKFAAREIVRLTREN-GYRYRDIAVVTGDVQQYGNYVPEIFEQY---- 369 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV----------------- 476 ++PY I + HP +E ++L + + F E V L Sbjct: 370 HIPYFIDQTKNILFHPFIECIRAILEMIEYDFSYESVFRFLRCGLASRVVTEAKNSDKEP 429 Query: 477 -PVLAA---------RFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 P +TE+ + L +V GIR P W F Sbjct: 430 DPAATEDLTQQPETGSHGLTEQEIDRLENYVLARGIR------GASRWSRP------WTF 477 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLM-----------QLNIWR 575 M G + + +E + E L +L Sbjct: 478 ---------VMPD--GTLEDMARLNEIREAVYENFKPLLEAFRGKDNTVSTQTYELYSLI 526 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 R L E+ L+E + I + ++ + + + + Sbjct: 527 RRLDMEQLLKERGNFFEA------HGNQARAKEYDQIYKIVMDLLDKVTSLLGDETMTIR 580 Query: 636 LLRDELAQRLDQERISQRFLAG-PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 D L + ++ V + + R K++ +G+NDGV P+ G Sbjct: 581 EYSDILDAGFEAAKVGIIPPGNDTVTVGDIERTRLNHVKILFFVGVNDGVVPKAGNQGG- 639 Query: 695 DLMSQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERF 743 ++SQ + G R + ++ + ++LY+++ R D Sbjct: 640 -IISQFEREKMAEYHLELAPGAREKVFIQKFYLYLNMTKPSERLYVTFC-RVNSDGKALR 697 Query: 744 PSVLVQELIDYIGQ 757 S L+ L+ Q Sbjct: 698 RSYLIGTLLKLFPQ 711 >UniRef50_C4G1J6 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1J6_ABIDE Length = 1133 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 72/447 (16%), Positives = 147/447 (32%), Gaps = 81/447 (18%) Query: 353 VNIEEFSRSDNKRPLDPLD--SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIV 410 + R + P+ D +S+ +VC +P+ EVE L +L+++ D L RDI V Sbjct: 280 KALSLLERQIFRYPVKKTDSENSVRINVCKNPREEVERLIPDILSLV-RDEGLRYRDIAV 338 Query: 411 MVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 ++ D++ Y + V + + +P + ++ +P +E + L + + F + V Sbjct: 339 VLGDMEEYG---EMVVDTLSSKG-VPCFLDSKKTIADNPFVEYIKASLLVVEENFSYDAV 394 Query: 471 LALLDVPVLAARF-DITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLT 529 + L + F ++ + ++ GI+ G Sbjct: 395 MRYL-----RSGFANVDVYEVDIFENYILRRGIK-----------------------GFR 426 Query: 530 RMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 R +Q+ DE+S + G +L+ + L ++ E Sbjct: 427 R-------------YQTSFIKDEASEEESISEGLRVTLVDEFKPLYDILKSKKSKAE--- 470 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQ--AIIAEGLGAQY----------------GDA 631 L F E M L + +IA A + Sbjct: 471 DFVKALYEFVSASGSEERLMKLSADFEEKGKMIAAREYAGCYRIVMSVFEKMYELLGDEK 530 Query: 632 VPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLA 690 + + R L + + + I + R KV+ LG N+G P+ + Sbjct: 531 LSIEEFRSILESGFSEGKAGFIPPGLDQIVIGDVERTRLKDIKVLFCLGFNEGKVPKSVG 590 Query: 691 PLGFDL---------MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSE 741 G M+ + + R +++ ++LY+SY ++ + Sbjct: 591 ARGIITDTEKEKLAGMNVELAPTAKERAFREQFYIYMLFSKPTERLYVSYSSSNM-EGKP 649 Query: 742 RFPSVLVQELIDYIGQSHYLPGDEALN 768 PS ++ L Q E ++ Sbjct: 650 IKPSSVINRLRAVFKQEIVSEPTEEVS 676 >UniRef50_B5E4P4 ATP-dependent helicase/deoxyribonuclease subunit B n=32 Tax=Streptococcus RepID=ADDB_STRP4 Length = 1091 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 86/585 (14%), Positives = 191/585 (32%), Gaps = 90/585 (15%) Query: 356 EEFSRSDNKRPLDPLDSS-ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 + S+ +D D + C + + E+E++ + L E+ L+ + +++ D Sbjct: 277 SSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHENSDLSYKHFRILLGD 336 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 + SY ++ +F +P+ + A HP+ + S+L+L RF ED++ LL Sbjct: 337 VASYQLSLKTIFDQYQ----IPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLINLL 392 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ-----HTWRFGLT 529 + D+++ + Q++ GI LPA Q H +F L Sbjct: 393 RTDLYT---DLSQSDIDAFEQYIRYLGI-----------NGLPAFQQIFTKSHHGKFNLE 438 Query: 530 RMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 R+ +VL + L L W L + Sbjct: 439 RL--------------NVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEGAV----TK 480 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 +D+ + E +A + + + ++ + G V L L + + Sbjct: 481 QLQDLTTTLEAVEQERQAE---VWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQ 537 Query: 650 ISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSR 708 V + + + + V +G+ P+ L++ + ++ Sbjct: 538 YRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTS--LLTDEERQNLNQA 595 Query: 709 RDD--------------DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 ++ +RY L + SA+++L++S S+ + SE S +QELI + Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLS--APSLFNESESKESAYLQELIHF 653 Query: 755 -IGQSHYLPGDEALNCDE--SEARVKAHLTCLHT-------------RMPFDPQNYQPGE 798 + + L+ ++ S + + L H + + Sbjct: 654 GFRRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLD 713 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPL-PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNF 857 Q +P + + + +Q L P + L F+ + F + L + Sbjct: 714 LQGLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQE 773 Query: 858 RTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFR 902 + S ++ ++ + + +R Sbjct: 774 ELR---------LRPDARSHGNFLHRIFERALQLPNEDSFDQRLE 809 >UniRef50_Q4L4Y2 ATP-dependent helicase/deoxyribonuclease subunit B n=65 Tax=Staphylococcus RepID=ADDB_STAHJ Length = 1162 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 64/383 (16%), Positives = 138/383 (36%), Gaps = 47/383 (12%) Query: 338 IQSDILELENR--AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREV-EVLHDRLL 394 +Q + + R + +E+ + P+ D SI S + EV EV + Sbjct: 263 LQQQFFKQQYRFNNKDLIQLEQQFDALQINPI-AYDGSINILESSSIREEVNEVARQIIK 321 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 D +DI ++ D ++Y+ +V +P+ I +R+ HP++E Sbjct: 322 D--TRDKQYRYQDIAILYRD-EAYAYLFDSVLPQYD----IPFNIDTKRSMTHHPIMEMV 374 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGI---RWGIDDD-- 509 SLL + + + ++ L+ +L F + + L +V E G+ RW +D+ Sbjct: 375 RSLLEVIQTNWNISPMMRLIKTNILTNHFKDSAYLIDLLENFVVERGVYGKRW-LDEKLF 433 Query: 510 --------NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELV 561 +E +L + + + +L ++++ + Sbjct: 434 SIDNFTKMGRKEHKLTTEEREDFEQ---------VVHLKNDIIDKILTFEKAMNEAENVR 484 Query: 562 GHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 G + + + L ++L RD L+ E + I I+ Sbjct: 485 GFATAFYETMEAF--------DLPKYLMTHRDQLD--VDGRHEEAEEIDQIWNGLIQILD 534 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGM 680 + + + + L + L+Q V+I T+ + K + ++GM Sbjct: 535 DLVTVFDNEEMTLKRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGM 594 Query: 681 NDGVYPRQLAPLGFDLMSQKPKR 703 NDG P+ ++ L++ + K+ Sbjct: 595 NDGAMPQPVSSSS--LITDEEKK 615 >UniRef50_Q67MD4 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Symbiobacterium thermophilum RepID=ADDB_SYMTH Length = 1165 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 110/689 (15%), Positives = 195/689 (28%), Gaps = 115/689 (16%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 I + + EV +L ++ E+ L R+I V+ D++ Y +F A+ Sbjct: 313 IALVEAQNRREEVAAAAREILRLVREE-GLRFREIAVVARDLEGYGDLAATLF----AEH 367 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYL 493 +P I RR HP++E + L + + V L + ++ + L Sbjct: 368 GIPAFIDRRRTVAHHPLVELLRAALEVVVQDWAYGPVFRYLKTDLT----GVSRAEIDLL 423 Query: 494 RQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES 553 +V E GIR Q W++ L R L ++ DE Sbjct: 424 ENYVIEHGIR-----------GRAWQQQEPWQY-LRRYTLEE--DAVPAGPAQQALLDEI 469 Query: 554 SGLIAELVGHLASLLMQLNI-----------------WRRGLAQERPLEEWLPVCRDMLN 596 + L + +L L R LE W Sbjct: 470 HRIRRRATAPLLAFQRRLQRRGRPGPTVREITTYLFQLLDDLKVARQLEAWKAEAEQ--- 526 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 D ET + + + + + + + L+ LD ++ Sbjct: 527 ---RGDLETAREHEQVWTRVLELFDQIVEGLGDQVLSPKVYLQVLSAGLDGLKLGLIPPG 583 Query: 657 -GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLA-------PLGFDLMSQKPKRGDRS- 707 V + T+ R + +LG + +P Q A L G S Sbjct: 584 LDQVIVGTVERSRHAGVRATLILGATEKDFPPQPAEDAIFTDRERERLKQSGLDVGPTSL 643 Query: 708 -RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ--------- 757 R +++L AL L+ISY PS +V + + Sbjct: 644 ERLFQEQFLTYVALTRGSDFLWISYPLADE-SGRAAAPSPVVGRMRRLFPELKPRPAAPP 702 Query: 758 ---------------SHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSY 802 AL S V+ H L+ + DP ++ G Sbjct: 703 APDAEAAVAQVATPRQLAAAVARALRRARSGYAVEPHWLDLYQCIVLDPDLHREGAAVLA 762 Query: 803 AREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAF--FQMRLQVNFRTE 860 A + + G + L + + L+ F + P R F + +RLQ Sbjct: 763 AVGYEEWLRRRGTPVGRELARLLYGDRLVTSVSRLEAFLSCPFRHFAGYALRLQGRAEFT 822 Query: 861 DSEIP------DTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRF--RAAGDLPYGAF 912 S + L R + L + + R R ++ + Sbjct: 823 VSAPEFGLFYHAALSLFVRELERDGLAWDTLTPDEAWRRMDSIIDRLAPRLQSEILLSSP 882 Query: 913 GEIFW-----ETQCQEMQQLADRVI--------------ACRQPGQSMEIDLACNG-VQI 952 + T + L++ V+ +E+DL G V + Sbjct: 883 QHRYLLRVIRRTLQSSLDYLSEHVLHGEFRPVAVEVPFGEEMDGLPPVEVDLPGGGRVLL 942 Query: 953 TGWLPQVQP----DGLLRWRPSLLSVAQG 977 G + +V DG R + Sbjct: 943 RGRIDRVDALEGRDGRWYVRVIDYKSGRR 971 >UniRef50_A0AL19 ATP-dependent helicase/deoxyribonuclease subunit B n=20 Tax=Listeria RepID=ADDB_LISW6 Length = 1157 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 84/577 (14%), Positives = 185/577 (32%), Gaps = 83/577 (14%) Query: 338 IQSDILELENRAVAGVNIEEFSR---SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 ++SD L LEN+ ++ + ++ + + H ++ + E+E + + Sbjct: 264 VESDKLFLENKRAKSDSLAFLADVWGNNKFVTFEEKPQDLAIHQANNRRAEIEGIAREIR 323 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 + +D+ ++ +I Y + V S +P I +RA HP +E Sbjct: 324 QL--TLKGYRYQDMAILTRNISDYDVLCETVMESFD----IPIFIDKKRAMAKHPFIEFI 377 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEG--------LRYLRQWVNESGIR--W 504 S + + E + + F L +V E+GI+ W Sbjct: 378 RSSIDAILFNWKYEPIFQ-----AVKTEFFFDVSENTSIMRRKADILENYVLENGIQNKW 432 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL 564 + + W + R L + E ++ +E LI E + L Sbjct: 433 KWEKE------------GDWIYRKIRGLSTNLLPQTDEELETQAIINEMRNLIVEPLSIL 480 Query: 565 ----------ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ 614 M L + + LE W + N + E E A + + + Sbjct: 481 ENNLAKARTGTEFAMALYHFLEQVKAVEHLESWRQTAEE--NGYLELAREHEQAWSSVSE 538 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 + E LG + D + + L+ + + + + + + KV Sbjct: 539 LLDEFV-EVLGEESLDINSFAEIVATGLDALEFSLLPPSL--DQIVLSDMENAKLLDMKV 595 Query: 675 VCLLGMNDGVYPRQLA-------PLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQ 725 + +GMNDG+ P + L ++ K ++ ++ L + + Sbjct: 596 IFAIGMNDGIMPLRQKDKGILSDQDRDSLRAENSNLKPSAKNNIGEEDLLAYKIISLPSD 655 Query: 726 KLYISYIGRSIQDNSERFPSVLVQEL---------IDYIGQSHYLPGDEALNCDESEAR- 775 KL++SY + S ++++ Y+ L +E + S+ Sbjct: 656 KLFLSYPAADE-EGKVLSESNYLRKIKGQFKKLNEEVYLTDPSLLSDEEQSSYIRSKQAT 714 Query: 776 ---VKAHLTCLHTRMPFDPQ-------NYQPGERQSYAREWLPAASQAGKAHSEFVQPLP 825 + + L P ++ + A++ L + K + Sbjct: 715 LGLLTSQLQMYKRGYPLSNVWWDAYNGYFEDTKESKVAKQVLSSLYYENKTKALHETTAK 774 Query: 826 FTLPETV--PLETLQRFWAHPVRAFFQMRLQVNFRTE 860 E + + +++F++ + F Q L++ R Sbjct: 775 NLFGENIHASVSRMEKFFSCEFQHFAQYGLKLEERAH 811 >UniRef50_A6TVN9 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Alkaliphilus RepID=ADDB_ALKMQ Length = 1149 Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 63/434 (14%), Positives = 155/434 (35%), Gaps = 55/434 (12%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 + + E+E + +++ ++ + DI ++ +D YS ++ VF + Sbjct: 305 LEIFAGSNLYSEMENVAAQIIHLV-RNRGYRWNDIALVSGGLDQYSMILKRVF----EEY 359 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF-DITEEGLRY 492 ++PY I ++R+ ++P++E +S + + + EDV + L F D+T++ + Sbjct: 360 HIPYFIDEKRSIMNNPMIELILSSIEILSRGYQYEDVFSFLKT-----GFSDLTKDEVEQ 414 Query: 493 LRQWVNESGIR---------WGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE 543 L +V + GIR G + +++ + + + E + + Sbjct: 415 LENYVLQYGIRGKAYSEPFTKGFEKKQIQQKDKEEGEK-----QID--------EEKKEK 461 Query: 544 WQS-----VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 + + P+ + + + L + + L E L +W+ R+ + Sbjct: 462 YNELRMRFIAPFAKFE-KRIYRKKKIGEITKALFEFMKELNIEDKLNQWIEELRE--EKY 518 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 F E I + + + +L L + Sbjct: 519 FEYVNENTQIWNKIMEIFDQLTEILADESATLKEYGRILEAGF---LACKVGVIPSTIDQ 575 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR---------SRR 709 V + ++ +S K + ++G+NDGV P G L ++ + S Sbjct: 576 VLVGSIERSKSHDIKALFVVGVNDGVLPFGQEDGGILLDHERESLVKKGISIGTTLESSL 635 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 +++++ A + L++SY Q+ S+L+ + ++ + D + Sbjct: 636 LEEQFMIYSAFSKPTEYLWVSYALAD-QEGKAMRQSILIDRFKK-LFKNLRIKSDVVNDV 693 Query: 770 DESEARVKAHLTCL 783 D + ++ Sbjct: 694 DRQLHLITTPISTF 707 >UniRef50_UPI0001699040 hypothetical protein Epers_04977 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699040 Length = 154 Score = 86.2 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 25/167 (14%) Query: 960 QPDGLLRWRPSLLSVAQGMQLWLEHLVYCA----SGGNGESRLFLRKDGEWRFPPLAAEQ 1015 P GLL +RP L ++LW+ HL CA + L + +D + A Sbjct: 2 TPAGLLSYRPGKLKAKDRLRLWVNHLALCALRQQTAAEAPLSLHVAEDQTLILHSVEAPG 61 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 L+ L++ + +G APL + ++ ++ LQ+A + + + Sbjct: 62 --QLLADLLQAWWQGQCAPLPFFAAASLSFAESG-------------DLQRAIKVWEKDH 106 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 + +R + P EA + R PL ++S Sbjct: 107 DSGAPNW------AVSTAFRGMQPLAEEAFSGLATRLGGPLLAASES 147 >UniRef50_C4V2E4 ATP-dependent deoxyribonuclease subunit B n=2 Tax=Selenomonas RepID=C4V2E4_9FIRM Length = 1198 Score = 86.2 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 88/461 (19%), Positives = 142/461 (30%), Gaps = 69/461 (14%) Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 G+ + E + D SI +P+ EVE +L L D Sbjct: 291 HRARTEGLRLLEAQLFGHGHITPAKDDSIRIVEAANPRLEVETAAADILR-LARDNGYRY 349 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 R+I V+V D+D Y + F +P+ + +R HP+ E ++ + + Sbjct: 350 REIAVLVRDVDLYGDLLSLAFADCG----IPFYLDVKRPSAHHPLAELLRAVAQMTWRGW 405 Query: 466 VSEDVLALL--------------DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV 511 E V L D P L A + E + L + GIR Sbjct: 406 AYETVFRALRTGFFPLLGTEEDEDAPPLCADWQ---EAVDRLENYCLAYGIR-------- 454 Query: 512 RELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPY-DESSGLIAELVGHLASLLMQ 570 E T W F R+ + E + D IAE + L L + Sbjct: 455 --SESQWTATEPWDFVQRRVTEHELHLDEEEERLREEQWLDHLRRRIAEPLSLLTGHLRR 512 Query: 571 -----------LNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAI 619 L + L + L W AA I A+ Sbjct: 513 HESTARVRTKALYDFLDELCVPQTLRLWSETADR------EGRLADAAAHRQIWSSCMAL 566 Query: 620 IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLL 678 + + + D + + L+ LD I+ V + + + V ++ Sbjct: 567 FDQLVEVRGDDPLSSRDYEELLSDGLDAMSIALIPPGLDHVTVASFDQNSIAGARAVFVI 626 Query: 679 GMNDGVYPRQLAPLGF----DLM------------SQKPKRGDRSRRDD-DRYLFLEALI 721 G N G+ PR G +L+ S G R+++ +RY Sbjct: 627 GANAGIMPRAGTTSGVFSDTELLFIGESLQTAGADSGHTVFGGRTQQSFLERYQLYRGFT 686 Query: 722 SAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 A+ L++SY S D S PS L+ L +P Sbjct: 687 EARDYLWVSY-ALSSVDGSTLAPSPLIARLRRISSSFFSIP 726 >UniRef50_B1YKM7 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Exiguobacterium RepID=ADDB_EXIS2 Length = 1143 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 94/586 (16%), Positives = 174/586 (29%), Gaps = 111/586 (18%) Query: 303 WGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSD 362 +G R Y+ L+ ++ Q DI + + ++ Sbjct: 239 FGVSQRCYMQLIEQMKERQIAH---------------EDIYYGQTVKFQSTGLRMLEQAL 283 Query: 363 NKRPLDPLDSSIT-FHVCHSPQREVEV---LHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 P D +T V + R+VE + + L +DI +V ++ Y Sbjct: 284 LSPGYPPTDEEVTGVTVSAAVNRQVETEAAVRKAI--QLVRHDGYRFKDIAFLVRHLEPY 341 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 + ++ F +PY + R + HP++E ++L + + + E V LL + Sbjct: 342 ADHLERAFQLYD----IPYFLDQRESMVHHPIVELVHAVLEIVMTGYREESVFRLLKTEL 397 Query: 479 LAARFDITEEG----LRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWR--FGLTRML 532 + + E L L +V E GI+ + W+ + L R L Sbjct: 398 IP----LPAEDPRLALDRLETFVLERGIKGSM-----------------WKKPWQLKRRL 436 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLL-MQLNIWRRGLAQERPLEEWLPVC 591 + ++ + L + + + + E+ Sbjct: 437 ------------ADEISLTDAELQEELELNEWRQFLVEAIEPLEKRFKASKTMSEYTRAL 484 Query: 592 RDMLNAFFLPDAETEAAMTLIE--------------QQWQAIIAEGLGAQYGDAVPLSLL 637 L + D T +E + + + A + L Sbjct: 485 YRFLEEHHMTDRLTVWKQQALEVNELSQAREHDQVYEAVLLLFEQLEAAAPEATLTTELF 544 Query: 638 RDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL---- 692 + L+ R S + V + R KVV LLG NDG+ P Sbjct: 545 VQMVETGLESLRFSLVPPSLDQVIATDYVRGRLQQVKVVFLLGANDGLIPLVEDQSKLLS 604 Query: 693 --GFDLMSQKPKR---GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 D + + DD+ Y + + + + L+ISY D P+ + Sbjct: 605 EGDHDFLHDQGIPVGKASLDVFDDELYYLYQGVTAPSESLHISYALVDE-DGKALQPASI 663 Query: 748 VQELID----------YIGQSHYLPGDEALNCDESEARVKAH----LTCLHTRMPFDPQN 793 V+++ Y ++ D+ L S R A L L R P P Sbjct: 664 VKQIKHQLLQDRPVKTYFAEAGDHAPDDQLQFVTSPERAAAAAAIELRRLQRRYPIQPSW 723 Query: 794 YQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQR 839 + R L + + + F L + E L R Sbjct: 724 FDVYNR-------LLENGRGRERMALFSNALFYQNQAEPLPEDLAR 762 >UniRef50_B9NIQ2 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NIQ2_POPTR Length = 292 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 19/121 (15%) Query: 978 MQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 M ++L L ASG E R+ + +DG + P+ AL L +L+ + EG + PL + Sbjct: 1 MPVYLRSLALAASGSQAELRV-VARDGLVQVLPMDPSDALARLRELMALWHEGQNGPLPL 59 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQL 1097 SG A + A QAYEG +V GEG+D + R + Sbjct: 60 PLRSGLAMAEGFPAA------------------AQQAYEGGHLVGGEGEDPSWARCYPDF 101 Query: 1098 T 1098 Sbjct: 102 E 102 >UniRef50_C9KJP7 ATP-dependent nuclease subunit B n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJP7_9FIRM Length = 1210 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 108/703 (15%), Positives = 211/703 (30%), Gaps = 117/703 (16%) Query: 320 SQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVC 379 ++E A+ P +LL Q + G+ E F + + + + Sbjct: 276 AREELAYRGPMPIHLLAE-QHRFA--PQSILHGMEQELFRYGGSAQSEEQG---VQLVEA 329 Query: 380 HSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAI 439 + + EVE +L ++ D R+I ++V D ++Y ++ VF D +P+ Sbjct: 330 ANRRLEVESAAADILRLV-RDEGWHYREIGLLVRDGEAYGDLVRLVF----EDYGIPFFE 384 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD---VPVLAARFDITEEGLRYLRQW 496 +R HP+ E S + + + E V L P + E + L + Sbjct: 385 DAKRPSIHHPLAELMRSAIEVVARDWRYETVFRCLRTGFFPPVR-------EDIDRLENY 437 Query: 497 VNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP-YDESSG 555 V E GIR + + W + Y+++ + + Sbjct: 438 VLEFGIR------GRKRWQQQEP----WDWHRR-----YSLDDGEQVDEDTASTLALIDS 482 Query: 556 LIAELVGHLASLLMQLNI-------------WRRGLAQERPLEEWLPVCRDMLNAFFLPD 602 L + V L++L L + L L+EW V L D Sbjct: 483 LRRQSVEALSALEDALRAADDVRGYTLALYDFLVQLEVPARLQEWAEVAER---EGRLAD 539 Query: 603 AETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNIC 662 A + + E G + + + L I V + Sbjct: 540 AAEHRQLWDDSMALFDQLVEVSGTEKMTLSDYEAVLSDGLDALQISLIPPGL--DYVTLA 597 Query: 663 TLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF----------DLMSQKPKRGD------R 706 + + + +LG + PR++ G + ++ K G+ R Sbjct: 598 SFDQNSLDNMRGLYILGADAATMPRRVREQGIFSDADRLHIAETLAAFQKEGEEEHTISR 657 Query: 707 SRRDD---DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 763 + +++L A+ L+ISY + + PS LV+++ + ++ +L Sbjct: 658 GGHEKSFGEKFLLYRGFTEARDYLWISYALADA-EGNGLQPSPLVKKMRELFPKAAFLSI 716 Query: 764 DEALNCDESEARVKAHLTCLHTR----------MPFDPQNYQPGERQSYAREWLPAAS-- 811 + + + A L P +EW Sbjct: 717 PLETVRRDDDLLLAAPRPALSGLANALRGEREHQAMQPCWRDVYNWAMGQKEWQRPLQLA 776 Query: 812 QAGKAHSEFVQPLPFTLPETV---------PLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 AG +P L E + + ++F P F L++ R E Sbjct: 777 LAGLFARSGAGRIPKELAEQIFAKGTVLRGSVTQFEKFRQCPFAHFAAYGLKLQERRE-- 834 Query: 863 EIPDTEPFILEGLSRYQINQ----QLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWE 918 YQ QLL+A++++ + D+P + E Sbjct: 835 ---------------YQFRSMDLGQLLHAVLKEYGSIVKRDYANRWQDVPEEKRAALCEE 879 Query: 919 TQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQP 961 +L ++ R + ++ + Q G L Sbjct: 880 LVNTLAPRLQSEILLSRDNYRHLKKRIEKTAEQAVGHLSAWAA 922 >UniRef50_C6IZE2 ATP-dependent nuclease subunit B n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZE2_9BACL Length = 1180 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 81/423 (19%), Positives = 156/423 (36%), Gaps = 63/423 (14%) Query: 359 SRSDNKRPLDPLD--SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 RS + P D +++ H S + EVE ++ L + + RD+ ++V ++ Sbjct: 302 RRSPWPKSEPPQDLEQALSLHRAASRRAEVEGAAREMVR-LAREEGVRWRDMALLVRNLG 360 Query: 417 SY----SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 Y +P ++A +PY + + + HP++E + L + + EDV Sbjct: 361 DYEELLAPTMEA--------YGIPYFLDQKASMLYHPMIEFIRAALDVVLGFWRYEDVFR 412 Query: 473 LLDVPVLAARFD-ITEEGLRYLRQWVNESGI---RW--GIDDDNVRELELPATGQHTWRF 526 + L +T E + L + SGI RW G + L L Q Sbjct: 413 CVKSEFLLPLDGSLTREHMDVLENYALASGIQGYRWFDGRPWKSAPSLSLEQEDQ----- 467 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEE 586 +++ A + G L++ ++ + + Sbjct: 468 -------------TAASVKAMEQLQLLERCRAAVAGPLSAFEKEIRKAKNAADMCAAVFH 514 Query: 587 WLPVCR-----DMLNAFFLPDAETEAAMTLIEQQWQA---IIAEGLGAQYGDAVPLSLLR 638 L D+L + + + AM Q W A ++ + + + + L L Sbjct: 515 LLERVEAAQRLDVLAHRMVREGKPRQAMEH-RQLWSAVLDVLDQIVEMMGDEPLELELFA 573 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 L L + ++S + V I + RS K + LLG+N+G+ P L G ++ Sbjct: 574 GVLETGLKELKVSLVPPSLDQVLIGSTERTRSGQVKHLFLLGINEGIMPANLQEEG--VL 631 Query: 698 SQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 S++ + G + D+R+L EAL A + L++SY + PS Sbjct: 632 SEQERERLAELGLELAPGLARKLLDERFLIYEALSGASRSLWLSYPAAD-GEGGALLPSE 690 Query: 747 LVQ 749 +++ Sbjct: 691 VIR 693 >UniRef50_C9LQY6 Putative ATP-dependent nuclease subunit B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQY6_9FIRM Length = 1028 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 96/544 (17%), Positives = 180/544 (33%), Gaps = 91/544 (16%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 I E + + R+L+++ D L RDI+V++ D+Y+ ++ F Sbjct: 195 IHIVSAPDSHAEADFISRRILSLV-RDKNLRWRDILVLLRSADTYTDPLERSFSRYG--- 250 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSL--PDSR-----FVSEDVLALLDVPVLAARFDIT 486 +P +++ +HP++ LL +SR F E + +L + Sbjct: 251 -IPVFTDEKQPMNNHPLVMLLDGLLHFIKAESRGKNRGFTREHIFRILKTEIFP---SFP 306 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS 546 + + L +V + IR+ TW+ +A + Q Sbjct: 307 TDMIDKLENYVLKYHIRFS-----------------TWQ-------KPWAFRDYRSIDQE 342 Query: 547 VLPYDESSGLIAELVGHLAS-LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAET 605 P + +L LN + G + E+ L +P+ + Sbjct: 343 PAPLSDKEITKQNTANTWREKVLSLLNPFLAGWKEALSAEDKCAFLYRWLTEQQIPETLS 402 Query: 606 EAAMTLIE--------QQWQA---IIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 E Q W+ ++ E + D +P L L L S Sbjct: 403 VWDELEFEKTKKRPHLQVWKKVLSLLDEIVHVTGKDILPEEELCGILTDGLSALTFSMIP 462 Query: 655 LA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--------DLMSQKPKRGD 705 V + ++ + KVV + G +G +P+++ GF L S + G+ Sbjct: 463 PTLDHVTVTSMDRGYAAEAKVVFIPGALEGSFPKKIDDSGFFTETEKQVLLKSARINLGN 522 Query: 706 R---SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID---YIGQSH 759 +++ Y +L AL A LY+SY + S PS L++ L Y Sbjct: 523 NLMELVQEEQFYTYL-ALTRASDALYLSYPAAAADG-SAAEPSFLLERLKALGYYTENME 580 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYA--REW--------LPA 809 LP + A L+ +P +N +P ++A ++W L Sbjct: 581 ILPPSPYHDDPSFFANPNQALS----LLPEILRNGRPSPTGNWAALKDWAEGNEYRELME 636 Query: 810 ASQAGKAHSEFVQPLPFTLPETV---------PLETLQRFWAHPVRAFFQMRLQVNFRTE 860 + AG + LP L + + LQ + + P + F + + + R Sbjct: 637 SKLAGLRYQNTAARLPKMLARKLFMKGGRFYGSVTKLQNYRSCPYQYFLRYGIGIEERNT 696 Query: 861 DSEI 864 Sbjct: 697 GEAD 700 >UniRef50_C4FTG6 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTG6_9FIRM Length = 1178 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 94/624 (15%), Positives = 185/624 (29%), Gaps = 105/624 (16%) Query: 306 LGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKR 365 + R + L S L D T + + Q++IL L + + S Sbjct: 248 VARHTYGQMQLLAQSLHLPVAEDWTINQVQEGYQANILTLAQAFENHLRLAPQELSQPLN 307 Query: 366 PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 + + Q EV +++ ++ ++ RDI+V+ D+D Y P + A+ Sbjct: 308 QVKTH----VIWEHDAIQTEVRHTSNKIHQLVSQE-GYRYRDILVLTRDMDRYRPLVTAL 362 Query: 426 FGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV--------- 476 F +PY HP++ S L L R+ D+ +L Sbjct: 363 FEQND----IPYFYDHAVIMGQHPLVLWLESGLKLYRYRYQLADIFGILKSGLWLPADLR 418 Query: 477 ----------PVLAARFDITEEGLRYLRQWV----------NESGIRWGIDDDNVRELEL 516 PVL F + L V + W D + + Sbjct: 419 AAMAENPQDGPVLEEEFK---AQVDLLENVVLANGYVGYRFAQLSFEWRFDQADRPYVNA 475 Query: 517 PATGQH-TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 T+ + + + + A +Q + SG A L W Sbjct: 476 AGQVTGQTYGQVVQALRESFLADFAP--YQDLAQLTSFSGQKAAEW---------LYQWL 524 Query: 576 RGLA-QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 + ++R + D + Q A + E + Sbjct: 525 EEVGVKDRLIARRDQAIEK-------GDLALSRQYEQVWQTLTASLDEFYQLYGEAELTF 577 Query: 635 SLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 S ++ L L++ A V + ++ + +KV +LG ++ P+ Sbjct: 578 SEFQELLLTGLNEATFHIIPPALDQVMVTSMESPQVQAYKVCFVLGADELTLPKHHQEDS 637 Query: 694 FDLMSQKPKRGD---------RSRRDDDRYLFL---EALISAQQKLYISYIGRSIQDNSE 741 ++ + G+ +S + + L + L+SA +LY+SY+ Q + Sbjct: 638 LLSVANRQSLGESLLPYQQLRQSSQHNYSLELLMTQQVLLSASDRLYLSYVAMKGQQTVK 697 Query: 742 RFPSVLVQELIDYIGQSHYLPGD-------EALNCDESEARVKAHLTCLHTRMPFDPQNY 794 P + + + +LP S + + + + Sbjct: 698 LSP------YLQQLAKQFHLPIKTYTHTLIHQNQVKLSRLEFGRYPVQMSSLLQLVHHYS 751 Query: 795 QPGERQSYAREWLPAASQAGKAHSEFVQP-------LPFTLPETVPLE-----------T 836 Q +R S A + H+ + LP L L Sbjct: 752 QQKDRPSAAFLDFLTLMASQNPHTWVLLAQLFQFNQLPQNLTPETALALFGQKMTASVSK 811 Query: 837 LQRFWAHPVRAFFQMRLQVNFRTE 860 L++++ P F L++ R + Sbjct: 812 LEQYYQDPYSHFLLYGLKIRPRQQ 835 >UniRef50_B9XFA2 ATP-dependentnuclease subunitB n=1 Tax=bacterium Ellin514 RepID=B9XFA2_9BACT Length = 1129 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 93/573 (16%), Positives = 183/573 (31%), Gaps = 63/573 (10%) Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 L + + F + L S+ C +P+ E + +L + Sbjct: 290 LHHLEQHWAEPKPFVDAATAARPYSLRESLRVITCTNPEAEATLAAREVLRFVRSGG--R 347 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 R++ ++V +D+Y + F +PY + R A HP+ E + L Sbjct: 348 FREVTILVRKLDNYHEALANTFKRYD----IPYFLDRREAVSHHPLAELTRNALRTVAFS 403 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE--LELPATGQH 522 + +D A L ++ A + + L E+ R G + L Sbjct: 404 WSRDDWFAALKTGLVPA----EDTEIDRLEN---EALAR-GWKGSTWQHPILIHDNPELT 455 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 W L R ++ ++++ G L L + + L + Sbjct: 456 EWAENLRRKIV--------PPFKNLAVNMGQQSNRPS--GR--HLAAALRDFWQSLKVDE 503 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 L+EW ++ P + +Q A + A + +PL L Sbjct: 504 TLQEWSDAEIAGSDSQLAP-----PIHLTVWEQMNAWLENVELAFPTETLPLREWLPILE 558 Query: 643 QRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP-------LGF 694 L + A V I + R+ ++ +LGMN+GV+P Sbjct: 559 AGLANLNVGVIPPALDQVLIGAIDRSRNPDIRLALVLGMNEGVFPAPPEQSVLLTDADRE 618 Query: 695 DLMSQKPKRGDRSRRDD--DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 +L + + G +R+ +RY A A+Q++ ++ PS + +L Sbjct: 619 ELKKKDVELGASTRQQIGHERYYGYVACTRARQRVVLTSAIFDAA-GKPLNPSPFLSQLK 677 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ 812 ++L+ +SE + L P + G L A + Sbjct: 678 QLFPSLETETFPKSLDWRKSE-HANELIVPLLRNQVQSPISKVQGVSALNKFPALAALRE 736 Query: 813 AGK--AHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 K + + + L L E + + +++F A P + F L+ Sbjct: 737 RLKHFSTTPTEESLSPELAERLYGPALRTSVSRMEQFAACPFKFFVHSGLRA-------- 788 Query: 864 IPDTEPFILEGLSRYQINQQLLNALVEQDDAER 896 + + F L+ + ++L + EQ E Sbjct: 789 -EERKKFELDIRDQGNFQHEVLASFHEQLKTEN 820 >UniRef50_A9KTE7 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Clostridium phytofermentans ISDg RepID=ADDB_CLOPH Length = 1147 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 73/445 (16%), Positives = 141/445 (31%), Gaps = 52/445 (11%) Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQRE-----VEVLHDRLLAMLEE 399 N + R K + D I+ P E +E+ LL Sbjct: 284 FHNSMALSALEKNIFRYPYKSFTEEQDD-ISITAAKDPMAEARHAVIEITR--LLR---- 336 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLS 459 + +DI ++ ++ Y ++ +P + ++ ++PV+E S L Sbjct: 337 EEEYRYKDIAIVSGAMEVYGDIVK----RELELAGIPCFVDHKKNILTNPVVEFLRSALD 392 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + F E + L + D T + + +V GIR E E Sbjct: 393 VVTHNFDYEAIFRFLKCGLT----DFTMDEIDLFENYVIAFGIR----GKYRYEHEWERK 444 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLP-YDESSGLIAELVGHLASLLMQLNIWRRGL 578 + + L ++ Y + + P Y+ + + + + +L L + Sbjct: 445 YKTNYEVDLEKI--NYV---RECILKEFTPLYETLTSKKSSVRECVNALYNLLCTYH--- 496 Query: 579 AQERPLEEWLPVCRDMLNAFF-LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 +EE + + + A D I + I + D +PL Sbjct: 497 -----IEEKIHIFVEKFKAQGEKEDKLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLKEF 551 Query: 638 RDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF-- 694 RD L + ++ + + + + R K + LG+NDG+ P+ G Sbjct: 552 RDILDTGFREAKVGLIPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKANPGGGILS 611 Query: 695 ----DLMSQKPKRGDRSRRD----DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 L + ++R + YL+L L Q KLY+ Y + S Sbjct: 612 DAERQLFADHEIELSPTKRQTAYLTEFYLYLN-LTKPQNKLYLYYSKLDV-SGKSIRASY 669 Query: 747 LVQELIDYIGQSHYLPGDEALNCDE 771 L+ ++ + D DE Sbjct: 670 LLGKISKIFPKLKIYDADRKSREDE 694 >UniRef50_B1HN89 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Bacillaceae RepID=ADDB_LYSSC Length = 1169 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 102/564 (18%), Positives = 181/564 (32%), Gaps = 100/564 (17%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 + + + EV + + + E +DI+++ + Y P I ++F Sbjct: 307 VMVFEASNRRAEVHAIAREITKLTREY-GYRYQDIVLLYRQAELYDPLITSIFQQYE--- 362 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP---VLAARFDITEEGL 490 +P + ++ HP++E S L + S + E V + L A I E Sbjct: 363 -IPIFTNTKKTMLHHPLIELSRSALEIMTSNWKYEPVFRSVKTDLFFPLQAELTIWRERA 421 Query: 491 RYLRQWVNESGI---RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSV 547 L + GI RW + W + R L E+ S Sbjct: 422 DRLENYCLAQGIYGERW--------------FEEPRWFYKKYRGL----------EFHSR 457 Query: 548 LPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF-------FL 600 + DE + AE+ + L + L+ ++ +++ + + Sbjct: 458 VQTDEERAMQAEIEAIRDEIRQPLKSLQDKLSIASTGKDIATALFELVESLQVYEKLQAM 517 Query: 601 PDAETEAAMTLI----EQQWQAII------AEGLGAQYGDAVPLSLLRDELAQRLDQERI 650 D E E L EQ W I G Q + + DE L+ RI Sbjct: 518 KDRELERGDALAASEHEQAWNEWINVLDQFVYMFGEQEMSVEEAAKILDEGFDTLEFSRI 577 Query: 651 SQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG------ 704 V + T+ R KV +LGMNDGVYP ++ G L+S + Sbjct: 578 PPTL--DEVMVATVDLARLSNIKVAFVLGMNDGVYPTRMEYEG--LLSDTEREWFSQIGY 633 Query: 705 -----DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 +R + +LF A + KLY++Y + S+ +++ I + Sbjct: 634 ELAPTSSNRLLQENFLFYRAASTPSNKLYLTYPTADE-EGKALLSSLYIKKFIGNDKIAG 692 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTRMPFDP------QNYQPGERQSYAREWLPAASQA 813 L G +A + + R P Q Q + A EWL Sbjct: 693 LLSGVQAERVVMDPIELLDESALPYLRHPRTALAHLMVQLRQAEHSRELAPEWLALQKFY 752 Query: 814 GK---------------AHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQM 851 + H +PL + + + + +++++ P F Sbjct: 753 QQDPYWALIFDRVHYPITHKNEAEPLETYITQELYGQKLTSSVSRIEKYFRCPFSHFTTY 812 Query: 852 RLQVNFRTEDSEIPDTEPFILEGL 875 L++ R E E F + L Sbjct: 813 GLRLEERAEYRL----ETFAMGDL 832 >UniRef50_B7AS97 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AS97_9BACE Length = 1091 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 75/423 (17%), Positives = 145/423 (34%), Gaps = 53/423 (12%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 +RA +E+ N R +I + +P+ E++ + +L L + + R Sbjct: 281 DRAPELAFLEQNMFRYNGRVYRDEPENIEIYCGITPKEELQFIAAEILR-LTREQGIRYR 339 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 DI V+ ADI++Y +F +P + +R ++P++E S +++ +S + Sbjct: 340 DIAVVSADIETYGMLAANIFEQND----IPAFVDYKRNIMNNPMIEFMRSGIAVIESGYS 395 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR--------WGIDDDNVRELELPA 518 E + L + A IT L + GIR W + + Sbjct: 396 YESMFRFLRSGITA----ITPNETDLLENYCLALGIRGRKRWYSQWDRNYIKKNREKADL 451 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 T + R+ + + P D + + + LL L + Sbjct: 452 TQLNELRY---------------RTVKILEPLDRAYTAASGTTVSVGELLEALYEFVAAS 496 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 E + E + + I + ++ E + + Sbjct: 497 DIEHKMNELADRLE------LNEENALASQYRQIYPKVMSLFDEIYSLLGEEKIKRKEFA 550 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 L L++ ++ V I + R KV+ G+NDG+ P++ G ++ Sbjct: 551 RLLDSGLEEIKVGLIPPTADCVLIGDMQRTRLDNIKVLFFAGVNDGIVPKKSENKG--IL 608 Query: 698 SQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 S+ + R + +R+ L KLY++Y R I D ER PS Sbjct: 609 SELDRYILENASVTLSPDARKKAFIERFYLYMNLTKPSWKLYLTYAARGI-DARERRPSY 667 Query: 747 LVQ 749 V+ Sbjct: 668 FVR 670 >UniRef50_D0BK92 Exonuclease RexB n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BK92_9LACT Length = 1189 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 81/605 (13%), Positives = 188/605 (31%), Gaps = 97/605 (16%) Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEA 453 + L + +DI ++ +++ +Q +PY + + HP+++ Sbjct: 337 IKTLVDSGKYRYQDIQILSRNLEEQQTLLQ----PLLETYQIPYFMDLSDTMEHHPLIQV 392 Query: 454 FISLLSLPDSRFVSEDVLALLDV-----PVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 ++ ++ + +++ LL P+ A + + LR + R +D+ Sbjct: 393 LDAIFAIQKHFWRYHNIMNLLRSEYCFWPLNRANLENKHDEEVTLRDALIH--YRQKLDE 450 Query: 509 DN-----VRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGH 563 + TW + + + + + EL Sbjct: 451 TETIILAQGYEGKDWISRKTWNYQVENI-------DEDSLSSREVLVHQQLTQAQELRE- 502 Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDML------NAFFLP--------DAETEAAM 609 ++ L + + L + +E + + +L AF D +T Sbjct: 503 --QIVSLLEPFYKKLDKVETTKEAITLLYQLLEKIGVTEAFLYWRNHAANIGDIQTARRQ 560 Query: 610 TLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMR 668 + ++ ++ E + + + + L + + + + +R Sbjct: 561 DQVWNEFLKLLEEYVYIFGDEPFDWEIFQLLLHTGFEHTHYNMAPSTLDQLTCTGIDSVR 620 Query: 669 SIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDR--------------Y 714 P KV +G++ GV PR G LM+ + + S+ D R + Sbjct: 621 YSPKKVTFAIGLSQGVLPRMEEESG--LMTDEEREYLLSKLDSGRFLHPTTIQKQSVEPF 678 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LF + L SA +KLY+S ++ S V+ +++ + + E Sbjct: 679 LFYKVLTSATEKLYLSMHHTD--KGAKLKSSSFVERILNQYEITTQDGNQKQQERFEQGE 736 Query: 775 RVKAHLTCLHTRM-----PFDPQNYQPG----------ERQSYAREWLPAASQAGKAHSE 819 V H F + P + + + +E+ H Sbjct: 737 FVTIHELFTTLLQKLRQYKFSKEEDIPSIWIALPHLLRQDKDFQQEYHTLVDSVF--HLN 794 Query: 820 FVQPLPFTLPET-------VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD------ 866 + LP L + ++ F+ P F Q L V R E Sbjct: 795 IAKQLPKELAAELYGNHLYLSTSQVETFYKDPFSHFLQYGLNVRERREFELTAAGSGEYF 854 Query: 867 TEPFI--LEGLSRYQINQQLLNALVEQDDAERLF------RRFRAAGDLPYGAFGEIFWE 918 E F + + +++ + ++A + + +F RF+ P + ++ + Sbjct: 855 HETFDQFIRKVHELKLDIRAIDAATTEKVLKEIFDSMNDDARFQILNATPRMNWTKVLLQ 914 Query: 919 TQCQE 923 ++ Sbjct: 915 DTIRQ 919 >UniRef50_Q3AA34 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Carboxydothermus hydrogenoformans RepID=ADDB_CARHZ Length = 1090 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 102/619 (16%), Positives = 194/619 (31%), Gaps = 126/619 (20%) Query: 356 EEFSRSDNKRPLDPLDSS-----ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIV 410 E + N PL P S ++ +P E+E R++ L + DI+V Sbjct: 264 ELLHLAQNYYPLLPDPYSGSLENLSLIAAANPLEEMEKAA-RIIRYLAKFKGYKLSDILV 322 Query: 411 MVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 ++ + Y I+ VF LP + A H + +L F E Sbjct: 323 LIPEDGYYISNIKTVFNEYG----LPVYVDKGLAFDHHGLYFLLKGVL----GEFNREAA 374 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN---VRELELPATG-QHTWRF 526 + L +L ++T + + L ++ + G+D + E P + +W Sbjct: 375 INCLKSGLL----NLTADEVFALENYL----LSRGLDGEKLVLKEAWEDPNSSYWESWEK 426 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEE 586 G + +LP L+ L + R + + Sbjct: 427 GF----------GEIISFSQILP----------LINTYREFSQSLKQLLLKIGVPRRISD 466 Query: 587 WLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD 646 AF E E E L Y + L + L Q Sbjct: 467 --ENGERFWQAFTNLLTEIEEVFGAERLNPTTFAEELLA--YLAKLSLKTIPKGLDQV-- 520 Query: 647 QERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD- 705 + S+R+ G + V +LG +G +P +P L+ + +R Sbjct: 521 RAGGSKRYWTGE-------------ARAVIILGAVEGKFP---SPPAAGLIFTEEERAKL 564 Query: 706 -----------RSRRDDD-RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 R R +D ++FL AL A++++Y+SY S+ P++LV D Sbjct: 565 KKVGLELSPLIRQRLKEDNFHVFL-ALTRARERVYVSYPRVSL-TGESFTPALLV----D 618 Query: 754 YIGQSH-YLPGDEALNCDESEARVKAHLTCLHTRM-------------PFDPQNYQPGER 799 ++ ++ L +E +E+ + L F+ E Sbjct: 619 WLKKAFPNLKSEEGSYGNETTPQALTRLLSREMVKVKKNGELPFIAQGAFNALLLSKPEL 678 Query: 800 QSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 + K ++ F + LP +T+ + L+ +++ P++ F + ++ Sbjct: 679 ITKIARAFATNPGKIKLNAGFKEFLP---SKTLSVSRLETYYSCPLKYFLKYLIKA---- 731 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 + E F E + AL+ AE + + R G + E Sbjct: 732 -----EEREIFTPEATE--------IGALLHGAVAE-IIKTVREKGQ----KLSTLLAED 773 Query: 920 QCQEMQQLADRVIACRQPG 938 + Q + Sbjct: 774 LKTLVYQAFTKAQQEYGEK 792 >UniRef50_Q0AXV2 DNA helicase/exodeoxyribonuclease V, subunit B n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXV2_SYNWW Length = 1124 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 87/473 (18%), Positives = 158/473 (33%), Gaps = 70/473 (14%) Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 +D+ V+ D+D Y I+ F D +P + +R SHP++E ++ L + Sbjct: 332 RWKDMAVVCHDLDRYGSLIRRTF----RDYGIPCFMDRKRDIMSHPIIELILAALEILSR 387 Query: 464 RFVSEDVLALLDVPVLAARF-DITEEGLRYLRQWVNESGI---RWGIDDDNVRELELPAT 519 + EDV L F D+T + + L + E GI +W D L Sbjct: 388 GYRYEDVFTYLKT-----GFSDLTVDEVEILENYALEYGIKGNKWKEDFSYGDAESLIEL 442 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 Q R+L +E + + I E+ L + L + NI+ + Sbjct: 443 NQ-------KRLLFTKPLEDLGVMLKG-------NNTIREMAQALFAFLERENIYSK--- 485 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 LE+W D+L FL +A + + I+ + + V L + Sbjct: 486 ----LEKWTN---DLLARGFLEEASESSQ---LWNAMIEILKQMVEIMGEQKVNLKEFKR 535 Query: 640 ELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL------ 692 L I V + + +S K + ++G+NDG+ P Sbjct: 536 ILEAGFLSLEIKIIPTTVDQVLLGDIQRSKSHDIKCLYVIGVNDGILPSLGREEGILSET 595 Query: 693 --------GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 G DL ++ +++R+L AL +++Y SY + P Sbjct: 596 EKEALQEKGLDLGYEREMIW-----EEERFLIYSALAKPAERIYFSYALADE-EGRALRP 649 Query: 745 SVLVQELID-----YIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER 799 S+L+ +L + + L + HL D + + Sbjct: 650 SLLIDQLRMIFPSLSLKTNLLEDRQWQLQMVATPESSFKHLVEKLRL-GLDGKELEDFWW 708 Query: 800 QSYAREWLPAASQAGKAHSEFVQPL-PFTLPETVPLETLQRFWAHPVRAFFQM 851 Y W + +Q L PE + + +R + P+R+ Sbjct: 709 DVY--RWYFEQESWQCSRKLLLQGLFHQNQPEPIEPQVSRRLFGTPLRSSVSR 759 >UniRef50_Q04GY8 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Oenococcus oeni RepID=ADDB_OENOB Length = 1161 Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 91/590 (15%), Positives = 196/590 (33%), Gaps = 77/590 (13%) Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSI---TFHVCHSPQREVEVLHDRLLAMLEED 400 + + + +N E+ R + S V + E++ + + L ++ Sbjct: 276 NIRPLSESQLNFEQSWRELETQGFTSQKRSFPQTKIVVSSDQEHEIDFVARSIRQRLVDN 335 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 P L +DI+V+ +D Y I +F LPY + HP+ +LL Sbjct: 336 PKLRAKDILVLAQRLDGYKNIIPKIFDRYD----LPYFLDKDTRMSDHPLASLAENLLGS 391 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 + F E ++ + +L+ + E+ + ++ L Sbjct: 392 SNE-FAYERIMKIFRTGLLSWQL---EDNFQTALDYLE-------------NYLLANNPK 434 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAE----LVGHLASLLMQLNIWRR 576 + WR +++ + Q + + LI ++ L + Sbjct: 435 EKNWRQEEFQLI---QISDEQDLNDDHKIDRQINALINRMRLFIIKILDDFQEKFAKVEN 491 Query: 577 GLAQERPLEEWL---PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP 633 + L WL V + +LN D + L+ + +Y Sbjct: 492 YHQAVKTLYNWLTDQQVDQVLLNQANDGDDRGQQTWKLLLSTLDEVDQLIGDKKYSQKDF 551 Query: 634 LSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP-- 691 L +L+D A I + + ++ FK + + +D P Q Sbjct: 552 LQILKDGFAAA-SFSGIPASL--DQITVSESGIVQRNDFKALYFIDASDASLPAQTNSSS 608 Query: 692 --LGFD---LMSQKPK------RGDRSRRD--DDRYLFLEALISAQQKLYISYIGRSIQD 738 FD L+ K D SR++ + + F +++SA + SY + D Sbjct: 609 LIDDFDRLQLIDDFSKAQKPYYLQDTSRQEMTAENFRFYSSVLSATDSVTFSYSKLRL-D 667 Query: 739 NSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL--------TCLHTRMPFD 790 + S ++ L + L ++ + +S+A + +L T F Sbjct: 668 GKQNELSPYLRRL--SLKNVSDLKIEKIPDLPQSQADLVDYLGTANSSAAILSQTAQNFG 725 Query: 791 PQNYQPG------ERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWA 842 + G +R Y + L A + + + + E + + ++++++ Sbjct: 726 ED-FIDGLTDLLIKRNPYFQRILQALHYNNQPVTLRPELIKKLFGEDLRLSISQIEKYYS 784 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 +P F Q L++ R + + L G + I +Q++N L+ + Sbjct: 785 NPYEYFLQYGLRLKKRNQFTVDA-----ALSGTYYHSIFEQVINRLIGKR 829 >UniRef50_Q03D70 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Pediococcus RepID=ADDB_PEDPA Length = 1192 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 110/724 (15%), Positives = 221/724 (30%), Gaps = 137/724 (18%) Query: 335 LHNIQ--SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR 392 LH ++ SD+L+LE + + +T +S EVE + Sbjct: 284 LHRVRVNSDLLKLEKYWIESSEGQVGGSKQENNAC------VTIFQANSRYAEVEHVATL 337 Query: 393 LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLE 452 + + +DP+L D V+ + YS I+ +F LP + A + HP+LE Sbjct: 338 IRQKMAKDPSLKFSDFSVLTRHLSDYSTIIKPIFDQME----LPIFYDLQIAMKDHPLLE 393 Query: 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEG---------LRYLRQWVNESGI- 502 +L + F EDV+ LL +L F TE+ + +V + GI Sbjct: 394 LINALFDIRAHHFRYEDVMRLLKTGLL---FPETEDDPHGMDFFKSVHITENYVLKQGIY 450 Query: 503 --RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL 560 RW ++ + ++ + + + + + + Sbjct: 451 GDRW----LQKKDWKYSRFND---------------IDEEKQTDEEIEINQRINTVKNYV 491 Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP------DAETEAAMTLIEQ 614 + QL+ G+ + L + + ++ ++ L + A EQ Sbjct: 492 AETVVPFFNQLSTATTGVEAAKALYD--FLIKNGIDQCLLAWRDQWIEEGRLAKAAEPEQ 549 Query: 615 QWQ---AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSI 670 W+ ++ E + L + SQ + + ++ + Sbjct: 550 TWETFIQMLDEFVDILGDQPFDPDNFMGLLNAGFEGATYSQIPSTLDQILVSESGMVQMV 609 Query: 671 PFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR---------------GDRSRRDDDRYL 715 K+V ++G D V P Q+ F ++Q K DR R + YL Sbjct: 610 DRKIVFIIGATDRVMPEQIQDNDF--LNQDGKNQIDPFLDDDQFLRISNDRQMRQEP-YL 666 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY---IGQSH-YLPGDEALNCDE 771 + +L SY +S D E S V+ + + I QS P E + D Sbjct: 667 NYLTFMIGSDELIFSYP-KSGNDGVELKISPYVERIGKHFGIIAQSLPSRPTTEPVRLDP 725 Query: 772 SEARV---KAHLTCLHTRMP----------FDPQN------YQPGERQSYAREWLPAASQ 812 + T H DP+ + S + L + Sbjct: 726 PFIELFIGSNRSTLSHLIQYARAMHEAKSEADPRWNLIYTILRQSTLGSLTDQLLSSLEY 785 Query: 813 AGKAHSEFVQPLPFTLPETV--PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT--- 867 + + +T+ + L+ F+ + F + L++ R P Sbjct: 786 KNIPEKLKPEIVEGLYGDTIYASVSKLEEFYRNEYSYFLKYGLKLQERETSDLSPADTGQ 845 Query: 868 ---------------EPFILEGLSRYQINQ---QLLNALVEQDDAERLFRRFRAAGDLPY 909 E +++ QI Q +L+ + + ++ +R Sbjct: 846 YFHAAMDKLIKMITTENLNFNEVNQEQIEQIAKRLVQQMEQDQQFDQFNGTYRMG----- 900 Query: 910 GAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRP 969 + + +Q + + + + I Q+ G + L ++ Sbjct: 901 -----FLRKQLDRTVQAMVEAIFKQLARTRMRPI----ASEQLFGQIGSQSGLPALNFKV 951 Query: 970 SLLS 973 Sbjct: 952 GEGK 955 >UniRef50_UPI00019738F1 ATP-dependent nuclease subunit B n=2 Tax=Clostridium RepID=UPI00019738F1 Length = 1184 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 74/471 (15%), Positives = 148/471 (31%), Gaps = 60/471 (12%) Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD-----PLDSS-ITFHVCHSPQREVEV 388 L I+ ++ R +E + ++ P S + H +P RE++ Sbjct: 286 LSKIERELFRYGRRGEQKEGKQEEGKRKEEKQNQTGCGAPHRKSGLILHQAENPIREIQF 345 Query: 389 LHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSH 448 + ++ L + RDI V+ + YS + F + +P + ++ + Sbjct: 346 VCAQI-ERLVKKEGYRYRDIAVVTGALSDYSGELTRQF----QENKIPCFLDSKKNILGN 400 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEG---LRYLRQWVNESGI--- 502 P++E + + F E V L + E L L +V GI Sbjct: 401 PMVELLRASMETLTEDFSYESVFRYLKT-------GMAVEDVEKLSRLENYVKALGIRGY 453 Query: 503 -RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELV 561 RW + + + L + + Q V P+ + ++ Sbjct: 454 KRW---NSRWERVYRDGELLN-----LDEL--------NEFREQIVAPFRPLREVFSDRS 497 Query: 562 GHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 + + L + + E L EW +M +AE E + I + Sbjct: 498 SSVREMTAALVHFLEEIHAEEKLGEWEKRFSEM------GEAELEKEYSQIYGLVMELFD 551 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQ-RFLAGPVNICTLMPMRSIPFKVVCLLGM 680 + V L ++ ++ + V L R K + +G+ Sbjct: 552 RVAALLGDEVVSRREYAQILDAGFEEIKVGLIPAVVDRVVAGDLTRTRLSHIKALFFVGV 611 Query: 681 NDGVYPRQLAPLGF------DLMSQKPKRGDRSRRD----DDRYLFLEALISAQQKLYIS 730 NDG+ P + G L+ +K + R+ + YL+L + L+++ Sbjct: 612 NDGIVPSAVRRGGILTEAERRLLKEKGVELAPTAREEGFLERLYLYL-VMTKPSDTLFLT 670 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLT 781 + S PS L+ ++ + DE S + L Sbjct: 671 WSQTSAA-GKGLRPSSLIGQVKSLFPELTETRSDEFEEAAWSLPAGRRALI 720 >UniRef50_B2KE91 ATP-dependent nuclease subunit B-like protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE91_ELUMP Length = 994 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 81/470 (17%), Positives = 161/470 (34%), Gaps = 64/470 (13%) Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEG 623 S L L + P + +L F + TE T+ II Sbjct: 414 FLSFLTNLGTQLGFFNKPYPWDVLSKHAVKILEDFVDANILTEGEKTVFNTIVDTIIQIN 473 Query: 624 LGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG-PVNICTLMPMRSIPFKVVCLLGMND 682 + ++ +EL + L ++ + + + V +M +R FKVV LLG+N+ Sbjct: 474 QFSLVRESAKEKEFLEELNEALKEQSVGKVQNSELGVTAGDVMGLRGQHFKVVILLGVNE 533 Query: 683 GVYPRQLAPLGFDLMSQKPKRG-------------DRSRRDDDRYLFLEALISAQQKLYI 729 V+P+ + L+ K +R DR + Y F L SA++KL++ Sbjct: 534 KVFPQIVREDP--LLRDKFRRTLRDVQGFWIGQKLDRFEEEKLFYYF--TLSSAREKLFL 589 Query: 730 SYIGRSIQDNSERFPSVLVQ--------ELIDYIGQSHYLPGDEALNCDESEARVKAHLT 781 S+ RS ++ PS+ + EL I ++ + K LT Sbjct: 590 SFQ-RSDEEGKAVVPSLYLTEVCRAAGIELEKNITNISRRELEKYFQTPQEFLNSKEMLT 648 Query: 782 CLHTR----MPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPL--- 834 + + + SY ++++ + + + ++ Sbjct: 649 KIFSFPSVEENIKAAGFDWDALASYYNAAKAMSARSSLGAYDGIVNYGDEIFSSLSKKGF 708 Query: 835 --ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL-------- 884 LQ P+R FF L ++ D D ++G ++I Q++ Sbjct: 709 SASALQNLAECPMRFFFIKALGLD-EEADILKRDAIASNIKGTIYHKILQRVYTEIDREI 767 Query: 885 -----LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ 939 L AL + E F R++ G P ++ E +Q+ + + + Sbjct: 768 SMDSALAALEKIMALEMSFERYKEFGLYPVVW--QVITEKMAAALQEFVKKDVESMEGFA 825 Query: 940 SMEI--------DLACNGVQITGWLPQVQPDG----LLRWRPSLLSVAQG 977 + D A +++ G++ ++ G ++ ++ S SV Sbjct: 826 PVMFEAAAAAKHDFAGEEIKLHGYIDRIDRRGKEYRIIDYKTSQRSVKDL 875 >UniRef50_A7VXI0 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXI0_9CLOT Length = 1125 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 100/633 (15%), Positives = 193/633 (30%), Gaps = 132/633 (20%) Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEA 453 + L ++ R+I V+ + +SY + V +A +PY + + P++ Sbjct: 320 IQKLVQEEGYRYREITVIARETESY----RGVLDAALESYGIPYFMDQPEPLEEKPLMTL 375 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYL--------------RQWVNE 499 +S L S + S+++ LL +TE + R+W+ Sbjct: 376 VLSALECVQSGYRSDELFRLLKT-------GLTELQTEEIAALENYALLWNLSGRRWLEP 428 Query: 500 SGIR-WGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES--SGL 556 + G + + Q GL R+ + + + ++ES SG Sbjct: 429 FTMHPRGFSPE------MTEEDQKKLE-GLNRL--------RETVMEPLAQFEESLRSGT 473 Query: 557 IAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQW 616 + + LL +LN + + D L + + Sbjct: 474 GKGIAYGVYQLLERLNAAQN-----------IRRMADELENM--GEWNLAQEQIRLWDML 520 Query: 617 QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP---VNICTLMPMRSIPFK 673 I+ + + + + E I+ F+ V++ R + Sbjct: 521 MEILDQMALVLKEQHLSPRRWSELFQLVVQSEEIA--FIPQGVDEVSVGGADRSRPAAPR 578 Query: 674 VVCLLGMNDGVYPRQLAPLGFDLMSQKPKR---------GDRSRRD--DDRYLFLEALIS 722 V L+G +G +PR G + S +R D + ++RYL A +S Sbjct: 579 AVFLIGAEEGEFPRTPVSAG--VFSDAERRLMISMGLPLYDSLEKLAVEERYLAYMAAVS 636 Query: 723 AQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP-GDEALNCDESEARVKAHLT 781 ++L++SY S R PS LV+E+ + EA + L Sbjct: 637 PSERLFVSY-ASSDLSGGARSPSSLVREVRKIFPECPVADRSQEAFSDLLWSPEPAFELA 695 Query: 782 CLHTRMPFDP-----QNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTL----PETV 832 R P + + + G Y A + F P V Sbjct: 696 ASLWREPSEREETLKRYF--GGLPEYQDRLEAVGRAASEEPIAFQNPENAQKLFGSNLRV 753 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 +++++ + F + L R P + + L + LL ++ Sbjct: 754 SASQIEKYYLCRFQYFCRYGLGAKERK---------PAVFDALEYGSVMHYLLENMLRAF 804 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQI 952 E L + + E+++L D + + Sbjct: 805 SGETLASMKK---------------QELLAEIRRLLDSYV----------------ETNL 833 Query: 953 TGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 GW + R+R L +A Q+ L HL Sbjct: 834 GGW-----EEKSPRFRYLLARLADTAQMLLSHL 861 >UniRef50_A3CVM8 ATP-dependent nuclease subunit B-like protein n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CVM8_METMJ Length = 1049 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 72/360 (20%), Positives = 129/360 (35%), Gaps = 45/360 (12%) Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 EV + + ++ + P +I V D S P+++ VF D +PYA SD RA Sbjct: 295 EVRAIAQEIRDLVAA--GVRPDEIAVAFPDFASALPYVEEVF----PDFGVPYAASDGRA 348 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 + P++ A + + +P + EDV+AL P L + E+ I Sbjct: 349 LSASPLVRALLDVAMVPARGYRREDVVALATSPYLPFTGGCELDIFSR------EARITA 402 Query: 505 G-IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGH 563 G D+ + + E I Sbjct: 403 GNWDERLAALARAAGEER----------------GRPDTPESAKSRLAEKVAAIESARKT 446 Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAI---- 619 + L L+ L + L + R +L + P + L+E + + + Sbjct: 447 VRELFADLSA----LEATKTLAGHIAAYRSVLERWQAPAMPEDGDPDLLEDEARNLGGFS 502 Query: 620 -----IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 + + + L+ LAQ R +R G V + + + + Sbjct: 503 GILAALERLARLLPDEKMSLAEFSSLLAQVAAGTRTGRRRSNGGVRVVGVREVAHLAVPY 562 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD---DDRYLFLEALISAQQKLYISY 731 + + G+ +G PR L F ++ + G RSR D ++RY F AL+SA+ ++Y+SY Sbjct: 563 LFVGGLVEGTMPRLTTRLPFTTDAETRRLGTRSREDILREERYYFTAALLSARTRVYLSY 622 >UniRef50_UPI0001C37CA1 ATP-dependent nuclease subunit B n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37CA1 Length = 1112 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 118/704 (16%), Positives = 230/704 (32%), Gaps = 129/704 (18%) Query: 338 IQSDILEL--ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLA 395 I DI L + EE + DN + + D EVE + + Sbjct: 271 ISPDIAYLSSHVLRNKKYSPEEAPKPDNIKIFEARD----------MYSEVEYVSASIKR 320 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFI 455 ++ L R+I V+ DI +Y+ I+A F +PY +S + V+ F Sbjct: 321 LIHSRKDLRYRNIAVISNDITAYAGIIKAAFKRYD----IPYFLSVEKPVTHTAVMVYFT 376 Query: 456 SLLSLPDSR-FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVR-E 513 SL+ L SR F SE + +L +T+ L + + +W +D + E Sbjct: 377 SLIDLLCSRKFRSELIFRMLKS-------GLTDVSLTDISA-LENYCYKWTVDSEIWESE 428 Query: 514 LELPATGQHTWR----------FGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGH 563 P + F L + L + + + +++ SG I + VG Sbjct: 429 FTAPDDALDSLEAIRKTVIEPVFALRKKL---SKKCTAKKICTLIYEHLVSGGIEKNVGR 485 Query: 564 LAS-LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAE 622 + S L+ + ++ D+L++ E E + + + +++I Sbjct: 486 MMSGLIN-----SDRAYEAAEIKRLWGCLIDILDSICETLDENEMSFSEAAKLMKSMIGR 540 Query: 623 GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND 682 + VP L + R++ K V ++G ND Sbjct: 541 INYS-----VPPQTLDAVMTASARTARLNAP-------------------KAVFIMGAND 576 Query: 683 GVYPRQLAPLGF------------DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYIS 730 G +P Q+ G DL+ P +R + +++ + +KL+IS Sbjct: 577 GDFPNQVTVHGLFSEPDRQKLAEKDLLVSTPLA---DLIAAERLVVYKSVSAPSEKLFIS 633 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD 790 Y S ++P+ ++ +I G ++ + A + H H + Sbjct: 634 YP-LSDLSGQTKYPAQIIDSIIKMFGTDRIRLTEDDIPVHYYAATL--HSAFYHYMQNRE 690 Query: 791 PQNYQPG-------ERQSYAREWLPAASQAGKAHSEFVQP---------LPFTLPET-VP 833 R Y R + S++G ++ P L T + Sbjct: 691 SNTPSAAAVEQLLMSRPDYKRRLIYVLSRSGHEQEYLIESEIMENLKSFSPLRLSSTGLE 750 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP------DTEPFILEGLSRYQINQQLLNA 887 L F + F L ++ R + E F GL + Q+ ++ Sbjct: 751 EYDLCHF-----KFFCDKCLGLHPREKIELDARIAGELTHECFF--GLLSSRSKQEFISM 803 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGE-----IFWETQCQEMQQL----ADRVIACRQPG 938 E E + + G FG+ + + + ++ ++A Sbjct: 804 SYEDMREEIGRKAEEYRNNKLAGDFGKDAKFGLIFSKLTDRLSEVFIHTQQSLMASDFVP 863 Query: 939 QSMEIDL-ACNGVQI-TGWLPQVQPDGLL-RWRPSLLSVAQGMQ 979 E+DL + V + G Q+ G++ R ++ ++ Sbjct: 864 HKFELDLRESHSVVLPFGNGKQLSFGGIVDRADICKINGRDYVR 907 >UniRef50_B0NKJ8 Putative uncharacterized protein n=8 Tax=Clostridiales RepID=B0NKJ8_EUBSP Length = 1141 Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 75/406 (18%), Positives = 136/406 (33%), Gaps = 70/406 (17%) Query: 373 SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD 432 SI HV +P+ E + + L R+I V+V+++D Y ++ F Sbjct: 309 SIGIHVTRNPKEEAMAVAGAI-RALVRKEGYRYREIGVIVSNMDVYGDDLEQAFAMYE-- 365 Query: 433 RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRY 492 +P + +R+ + +E SLL + + F E V L + + + Sbjct: 366 --IPAFMDHKRSILLNSFVEYIRSLLDMAEQNFTYESVFRFLRTNLA----GFNFDEVDR 419 Query: 493 LRQWVNESGI----RWGIDDDNVRELELPATGQHTWRFGLTRMLL-----G--YAMESAQ 541 L +V GI RW + R + R++L G Y ++ Sbjct: 420 LENYVIGLGIKGYKRW-QEKWVRRLKGMEEEELEALNHC--RIILVEKVDGLLYVLKQRS 476 Query: 542 GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR---DMLNAF 598 + + + +L LA L + + +E+ V R ++ + F Sbjct: 477 KTVRDITMALYEFMVREDLQVKLA----ALEERFQAEGKLALAKEYAQVYRIVIELFDKF 532 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 + + ++ + A + E +P S+ + +AG Sbjct: 533 VELLGDEKVSLNEYCKLLDAGLEEAR----VGVIPPSV---------------DQVVAGD 573 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR------------GDR 706 V R K + +G ND P L G L+S++ + G Sbjct: 574 V-----QRTRLKDIKALFFVGANDTYLPGSLLRTG--LLSERDREKFARERLSLSPGGKE 626 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 YL++ L ++L I Y S D PS L+QEL Sbjct: 627 QAYIQKFYLYMN-LTKPSEQLNIYYSKVSA-DGKSIRPSYLIQELR 670 >UniRef50_A6CDV2 ATP-dependent deoxyribonuclease subunit B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDV2_9PLAN Length = 1125 Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 92/617 (14%), Positives = 199/617 (32%), Gaps = 117/617 (18%) Query: 362 DNKRPLDPLDSS--ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 DN R + P S+ I + E+EVL + +L + + P +I ++ Y Sbjct: 291 DNPRGIKPSPSAEQIKVLAVAGQRNELEVLAVEIKQLLLQ--GVPPEEISLVFRSTLEYG 348 Query: 420 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 I +A +PY + + PV+ A + L + + + ++++LD Sbjct: 349 DLIHETLSAAG----IPYFLGQEQEFSRFPVIRAIFTFLQIELDNWSFDSLMSILDSNYF 404 Query: 480 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 539 + P T L+R+L ++S Sbjct: 405 ---------------------------------SPDWPEYKSGTAVRCLSRILRELKIDS 431 Query: 540 AQGEWQSVLP------------YDESSGLIAELVGHLA--SLLMQLNIWRRGLAQERPLE 585 + + + L Y + A L+ + L +L+ + L + Sbjct: 432 GKTDILNALEKEYRKANELCTRYPDQPKRQAILLEMESAYHLAKRLSSETQKLRGKELFV 491 Query: 586 EWLPVCRDMLNAFFLPDAETEAAM---------TLIEQQWQAIIAEGLGA---------Q 627 W+ + + N F LP A + L+ +++Q ++ + + Sbjct: 492 TWIEILISLANEFGLPKAWSSEEPGTEALDQRDQLVWERFQKLLFHAVAEVDQIEQFHQR 551 Query: 628 YGDAVPLSLLRDELAQRLDQERIS-QRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 + L R L L+Q+ ++ Q G V + +R++ + + G+++ +P Sbjct: 552 EAAPLDLLTFRSLLLDLLEQQTLALQTEETGRVQVLDASQLRNLSVPYLLVGGLSEASFP 611 Query: 687 RQLAPLGFDLMSQKPKRGDRSR-----------RDDDRYLFLEALISAQQKLYISYIGRS 735 R D + + RG+ + + ++ LF E + ++L +SY S Sbjct: 612 RSHRE---DCLYSEKDRGELNEYGLSLKRHANQQQEEMLLFYEVMTRFSKRLILSYPAIS 668 Query: 736 IQDNSERFPSVLVQELIDYIGQ-----------SHYLPGDEALNCDESEARVKAHLTCLH 784 F S + L+D + ++A++ + L Sbjct: 669 -STGQPLFASPYLTALMDLFEPGALSVRQVGELNPLPRREQAMSARDLRILAIDELKRDQ 727 Query: 785 T---RMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF---------VQPLPFTLPETV 832 + +Q R + + A + +E+ Q + P+ Sbjct: 728 PGLFLQILEEPGFQATARNILSAVEMAVARFEQEGFTEYEGIMVSAATRQAIHERFPQDY 787 Query: 833 PLE--TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 L+ + A P + F Q L + + F+ G+ + I +L L Sbjct: 788 EFSTTQLELYLACPFQFFVQNVLGIEVPEPPELRTN---FLQRGIHVHSILTRLYEQLGS 844 Query: 891 QDDAERLFRRFRAAGDL 907 + D +L+ + Sbjct: 845 EGDNTQLYEADQVEPLF 861 >UniRef50_Q836J9 ATP-dependent helicase/deoxyribonuclease subunit B n=37 Tax=Enterococcus RepID=ADDB_ENTFA Length = 1196 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 92/592 (15%), Positives = 192/592 (32%), Gaps = 116/592 (19%) Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLD---SSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 + N + G+N ++ PL D + + + E+ + + L + Sbjct: 289 ITNPDLQGLNDYWIQSQEHLPPLSTADWRGDGLFLWRAENVKEELTHVATEI-RRLVVEE 347 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 ++I V+ D+D Y ++ +F A+ +P + A HP++E SL ++ Sbjct: 348 GYRYKEIQVLTRDLDCYENLLEPIF----AEHEIPVYVDRDMAMDRHPLVEWIESLFAIH 403 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESG-------------------- 501 + DVL L + + L W+N+ Sbjct: 404 SYNYRYRDVLRFLRTELFMPMNQLATSE-ESLTDWLNQRNAWRRKVDITENVVLAYGYEG 462 Query: 502 -----------IRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY--AMESAQGEWQSVL 548 IR+ + + ++ + R L R+L Y AM SA+ Sbjct: 463 YYWSQEKDWEFIRYDFEAEEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKT------ 516 Query: 549 PYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAA 608 GL A V L+Q + + L+ W L A ET Sbjct: 517 ------GLEAATV--FYHFLLQSGVATQ-------LKMWR------LQAIEAGQLETARN 555 Query: 609 MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPM 667 +++ E + + + ++ L+ S+ A V + + Sbjct: 556 HEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQVQVRAMDLT 615 Query: 668 RSIPFKVVCLLGMNDGVYPRQ-----------LAPLGFDLMSQKPKRGDRSRR-DDDRYL 715 R KV +GM + ++P++ + L + RG R+ + Y+ Sbjct: 616 RPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGRKIAQEPYV 675 Query: 716 FLEALISAQQKLYISYIGRSIQDNS-ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 SA+++LY++Y S++D + E PS + + + + + + DE+ + Sbjct: 676 AYLVFSSARERLYLTYP--SVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIFDDETTS 733 Query: 775 RV----------------KAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKA-- 816 + +PF + E+ + P A Q ++ Sbjct: 734 LAHISTYRTLIGELTRLKRQRKETQEGLLPF----WLNMEKALMNQSIAPLAKQVFESLT 789 Query: 817 HSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTED 861 H + + L E + + ++ F+ + + R + + D Sbjct: 790 HQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYR--CQYQYFSRYGLRLKERD 839 >UniRef50_C8NER5 Exonuclease RexB n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NER5_9LACT Length = 1190 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 79/532 (14%), Positives = 177/532 (33%), Gaps = 90/532 (16%) Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEA 453 + + + + +DI ++ +++ F++++ ++ +SD + + HP+++ Sbjct: 342 IKRMVQTGNVRYKDIQILGRNLEENHLFLESLLKQYAIPGFID--LSD--SMEHHPIIQV 397 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLA----ARFDITEEGLRYLRQWVNES--------- 500 +L ++ + D+++LL + + + L+ RQ ++E+ Sbjct: 398 LDALFAIWQYDWRYADIMSLLRSEYVLWHKDDETSLK-DQLQAFRQQLDETETVILANGY 456 Query: 501 -GIRW-----------GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVL 548 G +W ID+D+ + T ++T R+LL A+ + Sbjct: 457 EGYQWTNGKPWSYVEDSIDEDSK----VEQTDKNT------RVLL-----KAEQLRNELT 501 Query: 549 PYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAA 608 + E + L L ++ W V + D ET Sbjct: 502 SILLPAFKKIEQSTTTKEAVSVLYQLLLTLGVDQSFIYWRDVAAE------EGDVETARR 555 Query: 609 MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPM 667 + ++ ++ E + + L +Q + + I + + Sbjct: 556 QEQVWTEFIRLLDEYIYIFGEKSFDWETFMMLLHTGFEQTHYNLAPSTLDELTITGMDSV 615 Query: 668 RSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL------------ 715 R P K+ +G++ GV PR + G L++ + + D R+L Sbjct: 616 RYTPKKITFAVGLSQGVMPRNIDETG--LLTDDERELFSNHLDSGRFLAPTTGQLQSVEP 673 Query: 716 --FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESE 773 F + L+SA + LY+S +D E+ S +Q L+ + N E Sbjct: 674 FVFYQLLMSATEHLYLSC--AISKDGKEQLVSNFIQRLLKHYELEEIDGSFNRQNRLEQG 731 Query: 774 ARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHS-------------EF 820 V + + ++ E + + +P + S Sbjct: 732 DFVVPYELFTTLLLKMRENKFKEKEEIDFLWKLIPHLLKVDATFSANYHALLASVFRLNV 791 Query: 821 VQPLPFTLPET-------VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 LP +L + + ++ ++ P F Q L++ R E P Sbjct: 792 ASKLPLSLAQELYGNQLNLSTSQIETYYKDPFSHFLQYGLRLKERQEFELSP 843 >UniRef50_C0EV12 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EV12_9FIRM Length = 1134 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 136/766 (17%), Positives = 247/766 (32%), Gaps = 164/766 (21%) Query: 65 PASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL------------LR 112 P F +M +++ + P+ FN +S L ++ + + LR Sbjct: 39 PEQFSLEMQRKMVKKHPRHGFFNIDVLS--FHRLAYRIFDECGYQPGEILEDLGVSMMLR 96 Query: 113 HYLTDDSDKRKLFQLSSKAADLFDQ----------YLVYRPDWLAQWET-GHLVEGLGEA 161 L++ + F+ S K A D+ Y V WE + E LGE Sbjct: 97 KILSEGENNFLYFKKSMKKAGFIDELKSMLMEFIGYGV-------TWEQVEEVSEKLGEN 149 Query: 162 QAWQAPLWKALVEYTHQLGQPRWH-------RANLYQRFIETLESATTCPPGLPSRVFIC 214 KAL +LG+ H R + ++ ++ P L + VF Sbjct: 150 --------KALSNKCKELGRIYEHFDKAIEGRFMVTEQILDVAREFAKEAPMLTNAVFYF 201 Query: 215 -GISALPPVYLQALQAL---GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFE 270 G + PV L L+ L I + + Sbjct: 202 DGFAGFTPVQLAFLKELLKVAGQINVTI-------------------------------- 229 Query: 271 DRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVT 330 +P F + + G+ LL +L E+ QE++ V + Sbjct: 230 --TIPEFVPGQRGMPEDLFTSSKKTGDALL------------MLCQ-ENMQEVEEVVKLD 274 Query: 331 PDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFH--VCHSPQREVE- 387 + + A N+ + SR + ++ H VCH+P E + Sbjct: 275 TP-----VSPRFINNPELAFLEKNLFQNSRKIYSKKIE------RIHMTVCHNPDGEADY 323 Query: 388 VLH--DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRAR 445 V+H ++L+ RD V+ D+ Y+ + F A +P ++ Sbjct: 324 VMHKIEQLVR----QKGYRYRDFAVLSGDVADYA----SAFKRKAAILNIPVFEDTKKKV 375 Query: 446 QSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWG 505 H +EA SL L + E V L ++ +E YL +V +G+R G Sbjct: 376 SYHSGVEAVRSLFHLAQMEYSYESVFRYLKS----GMSNLIDEDADYLENYVLYAGVR-G 430 Query: 506 IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP-YDESSGLIAELVGHL 564 + +LL E E ++ + + + + L Sbjct: 431 YSMWKKPFYRRLKNKD---EAAIKALLL--LQEKFMEETENFCSVMRDKEASVRDKIEVL 485 Query: 565 ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL 624 +++L+ + Q + EE N+ F+ AE L+ I+ Sbjct: 486 YHTMVKLSFEEKLKNQAQKAEE---------NSDFVKAAEYRQLYDLLLSLMDKIVMIFG 536 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGV 684 + ++ D L + V + L R KV+ + GMNDG Sbjct: 537 EEKMAVKELAEIV-DAGLDALGLGVVPLTM--DQVVLGDLKRTRLHEVKVLFITGMNDGK 593 Query: 685 YPRQLAPLGFDLMSQKPKRGDRS------------RRDDDRYLFLEALISAQQKLYISYI 732 P + G L+S + K ++ +D+ Y+++ A +LY SY Sbjct: 594 IPPNIEDRG--LLSDEEKEVLKNCGISLSQSLLEQSMEDEFYMYM-AFAKPTDELYFSYS 650 Query: 733 GRSIQDNSERFPSVL---VQELIDYIGQSHYLPGDEALNCDESEAR 775 D S PS+L + +L + + Y + + ++R Sbjct: 651 VTD-SDGSALRPSLLQKNISQLFPKLKRKQYPEEERRYYFNLEDSR 695 >UniRef50_Q038V6 ATP-dependent helicase/deoxyribonuclease subunit B n=8 Tax=Lactobacillus RepID=ADDB_LACC3 Length = 1179 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 89/557 (15%), Positives = 170/557 (30%), Gaps = 83/557 (14%) Query: 382 PQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISD 441 P E+ + ++ + + RD +++ +D Y+ I A+F + +P +D Sbjct: 323 PYHELRTVARQIYQAVRQGA--RYRDFLILARRLDPYAAVIPAIF----EEFNIP-QFTD 375 Query: 442 R-RARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA-ARFDITE--EGLRYLRQWV 497 R + HP++ SL ++ D + +DV+ LL +L DI + L + Sbjct: 376 LERPMKDHPLVVLIESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHL 435 Query: 498 NESGI----RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES 553 +GI RW + L A Q Sbjct: 436 VRTGITGKKRW----TQTDPWRYFQRNPNADDSQLD--------PEADKTAQINAIKTLV 483 Query: 554 SGLIAELVGHL------ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEA 607 + + +L+ L W + L W + E Sbjct: 484 ADTVPQLLRQWQTAKTGREAAASLYQWLQTTGVIDQLNVWRQTANA--DGDLSRSQANEQ 541 Query: 608 AMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMP 666 A Q A + R+ LA +Q V I Sbjct: 542 AWDTFTQLLNDYATILGEADFNR----DQFRELLAAGFASATYTQIPSTLDSVVISETGL 597 Query: 667 MRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL----------- 715 +R K V ++G + P P +++ + ++ ++ DDR+L Sbjct: 598 VRLAKAKHVYVIGATNTAMP--DVPNDSGVLNSEERQLLAAQLPDDRFLPEQGPTTTLGD 655 Query: 716 -FLEAL--ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 F+ L ++A +KL +SY ++ Q+NSE S ++L + + L Sbjct: 656 PFINYLGFMAASEKLTLSYPMQNTQENSENQASPYFRQLAQALQLTPATWAPAGLGTSLK 715 Query: 773 ----------EARVKAHLTCLHTRMPFDPQN---YQPGERQSYAR--EWLPAASQAGKAH 817 V+A H ++P ++ + A + L + Sbjct: 716 AVLGSQRAMLSDFVRAAGEAQHQKLPLSRSWQGVLASLKQTTLAPLAQKLAGSLTYQNDP 775 Query: 818 SEFVQPLPFTL---PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 L L V + L+ ++ + F + L + R E F L Sbjct: 776 GRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEYFLKYGLLLQPRPE---------FELSP 826 Query: 875 LSRYQINQQLLNALVEQ 891 + +L+ + Q Sbjct: 827 ADTGSLFHAVLDQYLTQ 843 >UniRef50_C9A8J1 Exonuclease RexB n=4 Tax=Enterococcus RepID=C9A8J1_ENTCA Length = 1205 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 91/539 (16%), Positives = 183/539 (33%), Gaps = 89/539 (16%) Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 + P L R+I +++A+ + Y +I +F + +P+ I + + HP++E + Sbjct: 367 KRYPALRYREIQLLIAEPEIYHQYIPKIF----TEFEIPFYIDEEQMMAQHPLVEFLNAF 422 Query: 458 LSLPDSRFVSEDVLALLDVPV-LAARFDITEEGL---RYLRQWVNES----------GIR 503 + F D+L LL + L A + + L R+ V+ + G Sbjct: 423 FACQSYGFRLNDILRLLRTELYLPAAYRSEADWLVGRDQFRKLVDITENKALAHDFQGAS 482 Query: 504 WGIDDD-------NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGL 556 W ++D E + + L R A + + L ++ Sbjct: 483 WTRNEDWELIEYLQSEEEQTDKVDLTAYTNQLRR-----AFKQDVADTLDWLTAARTNRD 537 Query: 557 IAELVGHL---ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIE 613 EL+ A + QL WR Q+ L + Sbjct: 538 AVELLYRFLLNAGVEEQLRHWRDQAIQQGKL-------------------DQARNHEQAW 578 Query: 614 QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPF 672 Q ++ E ++ +L D L L+ + A VNI L R Sbjct: 579 QALMDLLDEYAAIYGEESFDFALFEDVLLTGLENVTFGKIPTAIDQVNINRLDLARPKQA 638 Query: 673 KVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR-------GDRSRRD-------DDRYLFLE 718 K+ G+N+ PR++ L++ + ++ G++ RD + + F Sbjct: 639 KITFAPGLNETALPRKIENKT--LLTNEERQHFNQLFNGEKYLRDTVVEGSVKEPFAFYS 696 Query: 719 ALISAQQKLYISY-IGRSIQDNSERFPSV--LVQELIDYIGQSHYLPGDEALNCDESEAR 775 L+SA + L +SY + Q N + P + +V+ L + + L R Sbjct: 697 VLLSATEHLSLSYAVNFDTQQNIKMSPYLDRVVKRLDVPLQERGILTLVSDPRNYVGSYR 756 Query: 776 VKAHLTCLHTRMPF-----DPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 + ++ P+ ++ ++ EW A+Q ++ + P+P + + Sbjct: 757 GLIYQINNLSQQAQKNKENLPRVWEQLKQALLRSEWTDLAAQVFESQTHQNIPIPLSQAQ 816 Query: 831 TV---------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP--DTEPFILEGLSRY 878 + ++ F+ + F L++ R P E F + L R+ Sbjct: 817 AAALYGPSIYSSISQMETFYQCEYKYFVSYGLRLKEREVYGLNPAMTGEFFH-DALDRF 874 >UniRef50_A5ZW43 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZW43_9FIRM Length = 1109 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 207/647 (31%), Gaps = 95/647 (14%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 + +P+RE+E R+ ++ E I V+ +++ Y + VF +A Sbjct: 306 VQIFQAGNPEREMEETARRISRLVREH-GYRYGQIAVITGNLEEYGSIARHVFDAAE--- 361 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYL 493 +P+ + ++ + +P +E + L + F E V L D++ + L Sbjct: 362 -IPFFVDEKHSVLMNPFVEYLRAALEMTVQGFSYESVFRYLRC----GMSDLSRREVDIL 416 Query: 494 RQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES 553 +V GIR G R+ TW R+ G + Sbjct: 417 ENYVIALGIR-GF-----RKWN------ETWV----RIYRGM---DPAVIMDLNEIREHF 457 Query: 554 SGLIAELVGHLASLLMQLNIWRRGLAQ---ERPLEEWLPVCRDMLNAFFLPDAETEAAMT 610 + + EL + + + R L +R ++E L V L+ D E Sbjct: 458 TEEVRELAEGFSGKKKTVGEYSRYLYDFIVKRQIQEKLKV--QELHFKQQGDRAREKEYA 515 Query: 611 LIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRS 669 I ++ + + + V R L + Q +++ V I + R Sbjct: 516 QIYGIIMDLLDKMVSILGEEVVSPEEFRQLLETGMTQAKVALIPPGIDQVLIGDMERTRL 575 Query: 670 IPFKVVCLLGMNDGVYPRQLAPLGF------DLMSQKPKRGDRSRRD----DDRYLFLEA 719 + + +G+N+G P+ G D + + ++ YL+L Sbjct: 576 KDIRALFFVGVNEGCIPKNTESGGILTEMDRDFLGNQGIELAPGPKELMNMQRFYLYLN- 634 Query: 720 LISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN-------CDES 772 L + L +SY RS P+ L++ + + H ++ + S Sbjct: 635 LTKPSESLCLSY-SRSNGKGEAVGPAFLIRTIQTLFPEIHIERAEKPEKELDLLETPNTS 693 Query: 773 EARVKAHLTCLHTR---MPFDPQNYQPGERQSYA--REWLPAASQAGKAHSEFVQPLPFT 827 + +LT R F Y + L A+ K + + + Sbjct: 694 VGYLLENLTDEEKRKENQLFAELYSWYLNSPDYCTMTKKLTEAAFLRKPVDQISKSVAKA 753 Query: 828 LPETVPLE---TLQRFWAHPVRAFFQMRLQVNFRTEDS---------EIPDTEPFILEGL 875 L + L+RF A F + L++ R E E F +E L Sbjct: 754 LYGEISPNGATRLERFSACAFAHFLKYGLELTERAEYEFRAMDMGNIIHQALEEFAVE-L 812 Query: 876 SRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET--------------QC 921 + Q+N + L+ A+ + A +G ++ Sbjct: 813 RQKQLNWRELSDEERDTIADNCLDKIAAD-------YGNTILQSSARNYYMIERTRRILR 865 Query: 922 QEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWR 968 + + L +++ R + E+ + + L +Q + + + Sbjct: 866 RTVWALQEQLKNGRFEPEGFEVAIGGGRI---DRLDVMQEEDRVYVK 909 >UniRef50_A6NVW2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVW2_9BACE Length = 1118 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 62/389 (15%), Positives = 122/389 (31%), Gaps = 47/389 (12%) Query: 381 SPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAIS 440 SP EVE +L +++E+ RDI V ++ Y I+ +F +P ++ Sbjct: 304 SPYAEVEYTAGEILRLVQEE-GYRFRDIAVTARSMEGYGELIETIFARYG----VPVFLA 358 Query: 441 DRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWV--- 497 P+L S L+ + +D+ L + ++EE L + Sbjct: 359 KMSDILQKPILALITSALAAVAGDYQYDDLFRYLKTGLT----GVSEEDRDLLENYALKW 414 Query: 498 NESGIRWGIDDD---NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES- 553 + G RW D + + LP + L R+ Q + P +E Sbjct: 415 DLRGSRWTQKGDWTMHPKGYGLPVRPED--EALLARL--------NAVRRQVIAPLEELR 464 Query: 554 SGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIE 613 +GH L + + LEE ++ + + + Sbjct: 465 KNPDHTGLGH----TKALYAFLERIGLPERLEERTAALQE------RGEPALAQEYSQLW 514 Query: 614 QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPF 672 + + + + L Q + ++ V + + Sbjct: 515 DILCNALEQCAQIVGDTPMEADEFARLFSLVLSQYDVGAIPVSLDRVTAGEMPRLAHKHC 574 Query: 673 KVVCLLGMNDGVYPRQLAPLGF------DLMSQKPKRGDRSRRDD---DRYLFLEALISA 723 K V LLG +DG P+ G L++ + + + + E A Sbjct: 575 KAVFLLGADDGAIPQAAPSPGLLNDDDRSLLASYGLELAPTLTEKLNRELTIVYETCALA 634 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELI 752 ++L +S+ E+ P+ L+ L Sbjct: 635 GERLSVSWAAMG-SGGEEQRPAFLIPRLR 662 >UniRef50_A8U8N1 Exonuclease RexB n=1 Tax=Carnobacterium sp. AT7 RepID=A8U8N1_9LACT Length = 1206 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 72/455 (15%), Positives = 143/455 (31%), Gaps = 87/455 (19%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 I + Q E+ + + ++ +DI+V+ ++D Y I+ +F Sbjct: 326 IEVWAAENKQAEITHVAKEIRKLVATGH-YRYKDILVLTRNMDDYLAIIEPLF----TSH 380 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD----VPVLAARFDITEEG 489 + I HP++E +L+S+ + DV+ LL +P + +++E Sbjct: 381 AIELFIDSAELMNQHPLIEVIDALVSIYKRNWRYADVMRLLRTELVIPAFEEQESLSKER 440 Query: 490 LRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP 549 + + Q V + ++++ +LL Y E W P Sbjct: 441 AQRVSQQVERA-------QKYREKVDITEN-----------VLLAYGYEGY--HWTKTEP 480 Query: 550 Y---------DESSGLIAELVGHLASLLMQ-----LNIWRRGLAQERPLEEWLPVCRDML 595 + E + + A+ + L + + L + + ++ + Sbjct: 481 WHYTRYFYEDAEFQSDNDQRIEQTANSIKTAVSGLLVPFFKRLEKAKTSKDAAKELYLFM 540 Query: 596 NAFFLPDAETEAAMTLI-----------EQQWQ---AIIAEGLGAQYGDAVPLSLLRDEL 641 + D I EQ WQ ++ E + + L L Sbjct: 541 ETVGVNDQIGFWRDQAIEDNNLEEARKHEQTWQTFLQLLDEYVEVLGDEPFDLDSFHAIL 600 Query: 642 AQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 D S + V + R K+ +LG+ D P + +++++ Sbjct: 601 MTGFDNATYSMVPPSIDQVTFSGIEGTRIGTAKLTFMLGVTDAHLPAKTENKS--ILTEE 658 Query: 701 PKRGDRS----RRDDDRYL------------F--LEALISAQQKLYISYIGRSIQDNSER 742 DR D+ +YL F +A + + +KL SY N + Sbjct: 659 ----DRDFFSYFLDETQYLKPTVEAVMASEPFIAYQAFLDSSEKLIFSYPTSDETKNGPK 714 Query: 743 FPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 S V D I ++ LP L S Sbjct: 715 L-SPYV----DRIAKAFQLPIQAKLMDITSLEDPT 744 >UniRef50_C6JEU6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEU6_9FIRM Length = 1124 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 146/472 (30%), Gaps = 85/472 (18%) Query: 306 LGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKR 365 + + I L+ L E ++ + QS + NI + + Sbjct: 249 MSKQMIRALAGLTRDLEDPVYLKPSG-------QSRFAQAPALQFLEKNIFRYRKGVYAE 301 Query: 366 PLDPLDSSITFHVCHSPQREV-EVLH--DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFI 422 I SP E+ E L+ +I V+ +++ Y+ Sbjct: 302 EQQE----IKIFTAPSPLEEMREAARRMSELVRTC----GYRYGEIAVITGNLEEYARLA 353 Query: 423 QAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR 482 VF A +PY I ++ + +P +E + + + F E V L Sbjct: 354 AQVFEEAD----IPYFIDEKHSVMMNPFVEYLRAAMEMAVQGFPYESVFRYLRC------ 403 Query: 483 FDITE---EGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 539 ++E E L +V GIR G W R+ G E Sbjct: 404 -GMSEVTREQADKLENYVLALGIR----------------GYKKWSEKWVRVYRGMGAEK 446 Query: 540 AQGEWQSVLPYDESSGLIAELVG-----------HLASLLMQLNIWRRGLAQERPLEEWL 588 Q + + E +A+ G L + + ++W++ QER +E Sbjct: 447 IQELNEIREIFAEEVRELAQGFGSGKKTVEEYCRILYEFIQKSDVWQKLKRQERKFKE-- 504 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 D E I ++ + + + V R L L Q Sbjct: 505 -----------SGDKAMEKEYNQIYGIVMDLLDKMVEILGEETVNRQEFRQLLESGLSQA 553 Query: 649 RISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLA------PLGFDLMSQKP 701 +++ + V + + R K + +G+N+G P+ L D ++ Sbjct: 554 KVALIPPSIDQVMVGDMERSRLKEIKALFFVGVNEGNIPKSTQTGGILSELDRDFFQEQG 613 Query: 702 KRGDRSRRD----DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 ++ YL+L + +KL +SY + + P+ L+ Sbjct: 614 VELAPGPKELMNMQRFYLYLN-MTKPGEKLILSYSDTNAK-GEGISPAYLIG 663 >UniRef50_C0CXR8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0CXR8_9CLOT Length = 1216 Score = 72.3 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 86/433 (19%), Positives = 157/433 (36%), Gaps = 85/433 (19%) Query: 381 SPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAIS 440 +P+ EV + R+ L + L RD+ V D+ +Y I F A +P+ + Sbjct: 324 TPEEEVRYVKSRI-ESLVREQGLRYRDMAVATGDLAAYGREITRQFDQAG----IPFFMD 378 Query: 441 DRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNES 500 D+++ +P++E ++L F E+V L ++ R + T + + + W N + Sbjct: 379 DKKSILENPMVELIRAVLE-AVRDFSYENVFRYLKTGLVYDRAEGTADEAQPV--WENAA 435 Query: 501 GIRWG---IDDDNVRELEL----------PATGQHTWRFGL---TRM-----LLGYAMES 539 G G ID + + EL A +++ R+ LG + Sbjct: 436 GADSGGEAIDWEEASDGELADVLLGETGGGADRRYSREEAAVMTDRLENYVRALGI---N 492 Query: 540 AQGEWQS--VLPYDESSGLIAELVGHLASLLMQ-LNIWRRGLAQERPLEEWLPVCRDMLN 596 W S + + L + + ++ L R ++++ + R+ L Sbjct: 493 GWKRWDSQWEAQFKGAENLNLQELNAFRQWILAPLRPLREAMSKDATVASVTQALRNYLE 552 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP-LSLLRDELAQRLDQERISQRFL 655 + L + E + + E L +YG + L + L L E+ ++ Sbjct: 553 SMELREKLEEYQAYFAARGLRG--DENLAREYGQVYDRVEELFERLTGLLGDEKAERKSY 610 Query: 656 A-------------------GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 A V + + R +V+ +G+NDGV P++ Sbjct: 611 AQILDAGFGEIQVGVIPATIDQVMVGDITRTRLDGVQVLFFVGVNDGVVPQRKNGGSL-- 668 Query: 697 MSQKPKRGDRSR--------------RDD----DRYLFLEALISAQQKLYISYIGRSIQD 738 GDR R R+D YL+L L ++L I+Y GRS D Sbjct: 669 ------LGDRDREFFKAHRLELAPTAREDGCMQKFYLYL-MLSKPSRRLVITYAGRSA-D 720 Query: 739 NSERFPSVLVQEL 751 PSVL+ E+ Sbjct: 721 GKSLRPSVLLGEV 733 >UniRef50_C0CPC7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CPC7_9FIRM Length = 1111 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 69/399 (17%), Positives = 138/399 (34%), Gaps = 74/399 (18%) Query: 381 SPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAIS 440 +P +EV+ +L ++ E +I V+ D+ SY + + VF A +PY I Sbjct: 315 NPLQEVKGTAAEILRLVRE-KGYRYGEIAVITGDLPSYGTYARQVFSQAQ----IPYFID 369 Query: 441 DRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNES 500 ++ + +P +E + + + RF E L ++ E + L +V Sbjct: 370 EKHSILMNPFVEFLRAAVEMIVDRFSYESCFRYLRC----GMSSLSLEEIDELDNYVTAL 425 Query: 501 GIR----W---------GIDDDNVRELELPAT---GQHTWRFGLTRMLLGYAMESAQGEW 544 GIR W G+D++ + EL + +W ++ G+ +G Sbjct: 426 GIRGYSKWKETWVRLYPGLDEERILELNRYREQFLKEISW------LVQGF-----RGGV 474 Query: 545 QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAE 604 ++V E L + + ++ ++E L D Sbjct: 475 KTV----------RERSCALYQFISD-----NEMQEKLKIQE--------LEFAGRKDKA 511 Query: 605 TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ-RFLAGPVNICT 663 E I ++ + + + V + L L + +++ + V + Sbjct: 512 MEKEYAQIYGIVMRLLDKMVEILGDEKVSAREYQQLLEAGLTEAKVALIPPSSDQVLVGD 571 Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-----------RGDRSRRDDD 712 + R KV+ LG+N+G P+ + G L++Q + R Sbjct: 572 MERTRLKEIKVLFFLGVNEGNIPKDSSRGG--LLTQMDREFFQEEKIELAPDARELLGQS 629 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 R+ L Q LY+SY + + + LV + Sbjct: 630 RFYLYLNLTKPQDFLYLSYSQANAK-GEGLSAAYLVGTI 667 >UniRef50_Q03NA6 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Lactobacillus brevis ATCC 367 RepID=ADDB_LACBA Length = 1201 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 110/752 (14%), Positives = 218/752 (28%), Gaps = 135/752 (17%) Query: 306 LGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKR 365 L + + + +D + +D+ L+ A + + K Sbjct: 257 QSAKLYQQLYMVAQANRVPVLIDQQAKT--ARVSADLQALDTYWQASQTLSPQPSAVEKP 314 Query: 366 PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 I + EV + ++ ++ RD +V+ +D+Y I + Sbjct: 315 TH------IQIVQAANRYVEVSRVATQIRQLVATG-NYRYRDFLVLTRHLDAYQTVIDPI 367 Query: 426 FGSAPADRYLPYA-ISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL---------- 474 F + +PY +D R HP +E +L + + DV +L Sbjct: 368 F----QAQAVPYFDDADIRMAD-HPFVELLNALFDVQRRNYRYADVFRVLKSELLLPRDA 422 Query: 475 -----DVPVLAARFDITE-----EGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 VP +TE GL W + W + V + + T Sbjct: 423 DGELMAVPAYRQALALTENFVLKNGLEGQHWWTQDK--DWVYNRFAVGDGGVQTTRDDQI 480 Query: 525 RFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLL------MQLNIWRRGL 578 + R+ + + + + L + +L WR Sbjct: 481 SAQINRI-----RRFVKQTLPPFFARLKVAATYTDAAAVLYQFVANAGVSERLMTWRDQA 535 Query: 579 AQE-------RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 +P + W C D+L+ F + + + QA A +Q Sbjct: 536 IAAGDLTKAGQPEQTWAAFC-DILDEFHTILGDLPTVLPDFQALLQAGFAGAKFSQIPST 594 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + ++ + + + + ++G P P Sbjct: 595 LDQVVISESGIVQANNR---------KITF---------------IMGATADTMPDNQIP 630 Query: 692 -------LGFDLMSQKPKRGDRSRRDDDR--------YLFLEALISAQQKLYISYIGRSI 736 DL ++ + D + DD YL A +S ++L SY S Sbjct: 631 TTLLADNDRQDLSARLQQVDDGTYLRDDAATQLAGEPYLNYLAFMSGSERLIFSYPAMSD 690 Query: 737 QDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV--KAHLTCLHTRMP-FDPQN 793 S S V + DY G S + + DE+ T H D Q Sbjct: 691 DARSGLQLSPYVARIKDYFGLSIDIAAANPVAEDEAILPFVGTRRTTLRHLVQASHDSQL 750 Query: 794 YQPGERQS--YAREWLPAASQAGKAHSEFVQPL-----PFTLPETV-----------PLE 835 + +S Y L G+ ++ + L P L + + Sbjct: 751 REVPLSRSWLYVLNLLRTDPTYGELTTKLLGSLSYRNVPTQLTPDIVTQLYGTKINTSIS 810 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT--EPF--ILEGLSR----YQINQQLLNA 887 L+ ++A+P F + L + R + P + E F L+GL + ++N L+ Sbjct: 811 KLEEYYANPYAYFLKYGLNLQERDVFALSPASTGEFFHATLDGLMKLVNDQKLNLAALDD 870 Query: 888 LVEQDDAERLFRRFRAAGDLP----------YGAFGEIFWETQCQEMQQLADRVIACRQP 937 ++ + + + + P G + +T Q + L ++ + Sbjct: 871 QQLREMTDEVMAKLLDTTENPQFAILESSHRMGYIRQQLMKTMRQMAKTLQEQSKRTKLR 930 Query: 938 GQSMEIDLACNGVQ-ITGWLPQVQPDGLLRWR 968 + E+ + + V + R Sbjct: 931 PKRTEVQFGLGDERGLAALSFDVGKRRQVTVR 962 >UniRef50_A8YVK1 ATP-dependent helicase/deoxyribonuclease subunit B n=27 Tax=Lactobacillus RepID=ADDB_LACH4 Length = 1160 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 77/513 (15%), Positives = 157/513 (30%), Gaps = 93/513 (18%) Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL--- 458 RD +++ D+ Y ++ + +P+ ++ + HP++ +L Sbjct: 327 NYRYRDFLILAPDLKEYETYLTPIL----RQNNIPFFNDLQQEMKYHPLVVLIENLFNLR 382 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITE----EGLRYLRQWVNESGIRWGIDDDNVREL 514 L ++ F ++ +LA+L +L + E + L +V GI + + + Sbjct: 383 DLKENPFQTQSMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWKKHFADF 442 Query: 515 ------ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLL 568 L + + R L GY ++ + + E + + L Sbjct: 443 VSAEVIRLDKIDEEV--AKIDR-LRGYLVDKVTNLFTKL----EQEKDSQKALTIFFDFL 495 Query: 569 ------MQLNIWRR------GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQW 616 +L WR L Q + E+ + +L + + E Sbjct: 496 TKNGIAERLEQWRDAANNAGDLQQAQQPEQLWDLLIQLLKDYLAINPE------------ 543 Query: 617 QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVV 675 L + L + SQ VN+ + +++ +K V Sbjct: 544 --------------KFDLDEFFNMLISAFKEATFSQIPSTLDAVNLSEMGMVQTSGYKQV 589 Query: 676 CLLGMNDGVYPRQLAPLGF----DL------MSQKPKRGDRSRRD--DDRYLFLEALISA 723 ++G G P GF +L D R + D Y F +L A Sbjct: 590 FIIGATSGNLPSIEKKPGFLTTENLNQLQSSFESDAYLEDNQRLNNLDQNYQFGLSLALA 649 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL-----PGDEALNCDESEARVKA 778 Q ++YISY + N + PS+ Q L DY E L+ + Sbjct: 650 QDRVYISYPVLNA-SNEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQELLSFITNPDASLG 708 Query: 779 HLTCLHT---------RMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 +L +++ + + + + E + + Sbjct: 709 YLAYINSNTSDEAIDELLKITQKYLPQKVKAVLDASDFD---NQPEDIGEDLAAELYGKN 765 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 + L+ F+ + F L++ R E+ Sbjct: 766 LYSSVSQLETFYENSYEYFLTYGLKLRRRLENE 798 >UniRef50_C9LAG6 ATP-dependent nuclease subunit B n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAG6_RUMHA Length = 1144 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 73/452 (16%), Positives = 143/452 (31%), Gaps = 96/452 (21%) Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 Q + A N+ + R + D + + +P E+E+ + L Sbjct: 281 QGRFKDNPPMAFLEKNVFRYRRKKYPKQQDA----VQIYEAQNPASEMEMTAGEI-RRLV 335 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458 RD V+ D+ Y+P A A +P I ++ + +P +E + + Sbjct: 336 RTKGYRYRDFAVITGDMQVYAPAAA----RAFARYEIPCFIDEKHSVFLNPFVEYLRAAV 391 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 + F E + +L + DI+ E L +V GIR Sbjct: 392 DMIVENFSYESIFRMLRCGL----NDISTEEADRLENYVIAMGIR--------------- 432 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEW------QSVLPYDESSGLIAELVGHLASLLMQL- 571 G +R Q EW ++ + + A LV ++ Sbjct: 433 --------GFSRW---------QQEWVRSYRGENPEECVQIDKIRASLVEKWEPFYKKMK 475 Query: 572 ------NIWRRGLAQERPLEEWLPVCRDMLNAF---FLPDAETE--AAMTLIEQQWQAII 620 + L Q + ++ L F F + + I + ++ Sbjct: 476 TPDASVRTYTEALYQYITANK----IQEKLKEFTRNFEAEGNLSLVKEYSQIYEIVMNLL 531 Query: 621 AEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLG 679 + + V + ++ L L + ++ V + + R K+V +G Sbjct: 532 DKLVEILGDKKVRIREFKEILEAGLSEAKVGIIPPTSDQVLVGDMERTRLKDIKIVFFVG 591 Query: 680 MNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD-----DDRYLFL-----EALISAQQKLYI 729 +N+G P++ L+S D +R + +R L L E L + + LY+ Sbjct: 592 VNEGKIPKEQQAGK--LLS------DLNREELKGSLKERGLSLAPTAKENLYTQKFYLYL 643 Query: 730 SYIGRSIQ----------DNSERFPSVLVQEL 751 + S + PS LV ++ Sbjct: 644 NLTKPSERIYLSYSRLSSSGEAMSPSFLVAQI 675 >UniRef50_C0EHH2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHH2_9CLOT Length = 1119 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 77/432 (17%), Positives = 147/432 (34%), Gaps = 65/432 (15%) Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSS---ITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 ENR + R+ + ++P + + + + EV+ + + +++ Sbjct: 263 ENRLFVHPELAHLERNILRNRIEPYQGTCEHVKVLLAPNEYGEVDAVLSEVWELVQRH-G 321 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 R+I ++ D++SY Q V SA +PY + + + + P++ SLL+ D Sbjct: 322 YRFREIALITRDLESY----QGVLESALRKYGIPYFMDETVSVEHDPLIRFASSLLAAAD 377 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 VLALL RF +T + Y ++ I +L P T Sbjct: 378 GGKDISPVLALLKCG--LTRFGLT--QISYFENYLYTWNI-------TKDQLNQPFTHNP 426 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQ-------LNIWR 575 R G+ + + Q DE +AE++ L L Sbjct: 427 -------R---GFVDRETEQDGQVTALADEVRAAVAEVISLLRGAEQTARGYGSALFEAL 476 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 L L + + F E ++ + + + Sbjct: 477 HRLGVADVLNQRVERLNG--EEKFPEAEEQARLWDVLIDILEVLAHSTGEVRLTLRRYRE 534 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSI--PFKVVCLLGMNDGVYPRQLAPLG 693 L D A+ D I Q V I + R+I + V + G +G++P Sbjct: 535 LF-DLSAKGYDLGSIPQSL--DAVMIGSAE--RTIIGNSRAVFVFGAGEGIFP---LSPQ 586 Query: 694 FD-LMSQKPK-------------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDN 739 FD + + + GDR ++R+ ++L S ++ L +S I Sbjct: 587 FDGVFTDSDREELKKLGVELSKPIGDR--ILEERFSAYKSLSSPREHLVVSARLADIA-G 643 Query: 740 SERFPSVLVQEL 751 S +PS ++ ++ Sbjct: 644 SPLYPSEVITQI 655 >UniRef50_C4G8W0 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G8W0_9FIRM Length = 1199 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 69/364 (18%), Positives = 119/364 (32%), Gaps = 43/364 (11%) Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458 D RD ++ A++ Y+ + +F LPY + + HP++E +S L Sbjct: 370 RDQGGRYRDFAIVCANLSDYADYAGQIFDKMD----LPYYLDQEQDILFHPLVEFILSSL 425 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 SL F E ++ L + I L ++++ IR G R Sbjct: 426 SLFTEDFSEESLMQQLRSGLA----GIDPSDADLLERYIHARRIR-GF--ARYRRPFSGR 478 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES--SGLIAELVGHLASLLMQLNIWRR 576 + L + +G + + +S LA + + + Sbjct: 479 VRNFSQEQMLR------VEQLRKGIVADISDFRQSMCEENAVTRDRALA-----IYAYLQ 527 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 E LE CR + L+ + + + ++ LG + + Sbjct: 528 AHEVEEKLEARANACRAEGDEIAASIH--SRVFGLVMETLEKM-SDLLGEEKMSLSDFAQ 584 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 L + + + + F V I L R K + +LG +D PR G L Sbjct: 585 LLEAGLRAISVGTVPPSF--DSVVIGDLERTRLEHIKTLYVLGASDAAIPRSAESSG--L 640 Query: 697 MSQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 SQ + GDR R R+ AL ++L +SY R D S S Sbjct: 641 FSQAEREKLREKQIDLAPGDRERAFMQRFYLYLALTKPSEQLVVSY-ARLSSDGSALRES 699 Query: 746 VLVQ 749 L+ Sbjct: 700 YLIG 703 >UniRef50_C0WLM6 ATP-dependent deoxyribonuclease, subunit B n=3 Tax=Lactobacillus RepID=C0WLM6_LACBU Length = 1181 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 97/622 (15%), Positives = 191/622 (30%), Gaps = 105/622 (16%) Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 I +D+L+LE + + DN + SI + + E++ + R+ M Sbjct: 283 RISADLLKLEKFWIQSSGLGAID--DNPITVSK---SIQVYQADNQYSELDQMATRIRQM 337 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFIS 456 + D +++ +DSY + +F + +PY +++ HP++E + Sbjct: 338 VSTG-KYRYSDFLILTRHLDSYETILDPIF----TMQQIPYFRDIQKSMVDHPLVELLEA 392 Query: 457 LLSLPD----SRFVSEDVLALLDVPVLA------ARFDITE--EGLRYLRQWVNESGI-- 502 L + D + +DV+ L ++ I + + + V ++G Sbjct: 393 LFDMYDPDRPRNYRYDDVMRFLKSELVLPQATDGTAMKIDDYRQAVSLTENLVLKNGFEG 452 Query: 503 -RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSG----LI 557 +W DDD R+ + + ++ LP + Sbjct: 453 KKWTQDDDWQYVWVADDDDGTVLTEKDKRIT--QQINVIRHLIKNALPNFYNRFYKAKTN 510 Query: 558 AELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQ 617 A+ G L L++ + R L++W D + IEQ W+ Sbjct: 511 ADAAGILYRFLVENGVVNR-------LQDWRNA---------AVDRQDINRSDEIEQVWR 554 Query: 618 ---AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNIC--TLMPMRSIP 671 +++ E + + + SQ V I ++ M + Sbjct: 555 TFCSLLDENVRILGDKPFVAQDFWALIYAGFEGATYSQIPSTLDQVQISESGMVQMNN-- 612 Query: 672 FKVVCLLGMNDGVYPRQLAPLGF----------DLMSQKPKRGDRSRRD--DDRYLFLEA 719 KV ++G ND P ++ D +S D + + YL A Sbjct: 613 RKVTMMIGSNDETMPERIVNKSLFGDDDVLQIQDNLSDSQYLNDPADEQMAAEPYLNYLA 672 Query: 720 LISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAH 779 S +L SY + D S S V I L +++ V + Sbjct: 673 FTSPSSRLIFSYTNH-VNDESGINLSPYVSR----IAAHFNLKVVNYAAVPDNQRAVNVY 727 Query: 780 L-----TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHS------------EFVQ 822 + T H G+ Q A Sbjct: 728 IGSKRATLHHLIQVIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTNQLLGSIDYKNVPV 787 Query: 823 PLPFTLPE-------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGL 875 PL + E + + L+ F+ +P F + L++ + E F L Sbjct: 788 PLSREIAEKLYGSALNISISQLESFYENPYEYFLKYGLRLQ---------EREQFELSPA 838 Query: 876 SRYQINQQLLNALVEQDDAERL 897 S Q + L+ ++ +++ Sbjct: 839 STGQFFHEALDRIISMVHEQKI 860 >UniRef50_Q2FUG2 ATP-dependent nuclease subunit B-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUG2_METHJ Length = 1140 Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 83/432 (19%), Positives = 153/432 (35%), Gaps = 78/432 (18%) Query: 383 QREV--EVLHDRLLAMLEEDPTLTPRDIIVMVAD---IDSYSPFIQAVFGSAPADRYLPY 437 REV E++ L + ++ DI + D Y+ ++A D +P Sbjct: 290 MREVIREIVR--LHEI-----GVSYEDIAIATPDFRSTRVYA--LEAC-----TDSGIPV 335 Query: 438 AISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWV 497 S QS P++ ++S+ L + ++++ ++ P R++ EE Sbjct: 336 RPSQGSLLQSSPLIAYYLSIFDLIEKGMRYDELVRVIQSPYCRFRWE-PEEDADQKSGDQ 394 Query: 498 NESGIR------------------WGIDDDNVR-ELELPATGQHTWRFGLTRMLLGYAME 538 +SG R +G+D ++ E LP + G + Sbjct: 395 KKSGKRDSRYKYLSYKNFDLLCRTYGLDGGHIDWEKRLPDVLLFSDDEGDE-----QPLP 449 Query: 539 SAQGEWQSVLP----YDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 QG QS P Y L + + +++L + L +R + E + + + Sbjct: 450 DGQGFVQSKKPVSRTYHPRRPLEKQEIADTIEGIIRLVGIIKRLRDKRTIREHIWHFKTI 509 Query: 595 LNAFFLPDAETEAAMTL-----------------IEQQWQAIIAEGLGAQYGDAVPLSLL 637 L P A +L + + Q + G+ + AVP++ + Sbjct: 510 LKEIGSPVPGLAHANSLNAWLTDEEYLDLSSFHTLLSELQDLSGTGVISYLNPAVPVTFI 569 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV---VCLLGMNDGVYPRQLAPLGF 694 A R + S + L +R I + V L+ +N+G PR L F Sbjct: 570 DFIGAVRHVLQEKSGNVSPDASGVI-LTGIREIAHQHYPYVFLVSLNEGHIPRLTTRLPF 628 Query: 695 DLMSQKPKRGDRSRRD---DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 S+ + R+ D ++Y F+ AL + LY+S+ +D SV + Sbjct: 629 TNSSENSRMDTRTLSDILRQEKYQFITALAAGTTHLYLSW--YEHKDERTVLSSVFI--- 683 Query: 752 IDYIGQSHYLPG 763 DY+ S LP Sbjct: 684 -DYLKSSTLLPE 694 >UniRef50_C8PAK3 ATP-dependent exonuclease subunit B n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PAK3_9LACO Length = 1157 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 69/495 (13%), Positives = 166/495 (33%), Gaps = 64/495 (12%) Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISD-RRARQSHPVLEAFISLLSLPD 462 +D +V+ ++ Y ++ +F + +D ++ + HP++ ++ + D Sbjct: 331 RYKDFLVLAPNLSEYETYLTPIFSQNNISMF-----NDLQKQMKFHPLVVMIENIADIND 385 Query: 463 SRFVSEDVLALLDVPVLAARFDITE----EGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 F ++D++ +L +L + + + L +V I + + + Sbjct: 386 MGFKTQDIITILKTRLLIPEWYTDDIKFIADVDLLENFVLAHNI-----NHQLWKKSFYD 440 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL--VGHLASLLMQLNIWRR 576 + L ++ + + E L + + + L ++ + ++ Sbjct: 441 FVDNNISH-LDQI-------NEKVEKLDKLRQFIIENIDNLITQLHKLTNVQEAVTLFWN 492 Query: 577 GLAQER---PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP 633 L + + LE+W + N + E L+ + + + + Sbjct: 493 FLLKNKINKKLEKWRNT--AINNGDLQLAQQPEQIWALLNKLLKDYVLIA------EEFN 544 Query: 634 LSLLRDELAQRLDQERISQ-RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 D L + SQ + V + + +++ FK V ++G + P+ Sbjct: 545 TENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQNNSFKQVFIIGAVNNSLPKIQNKP 604 Query: 693 GFDL----------MSQKPKRGDRSRR---DDDRYLFLEALISAQQKLYISYIGRSIQDN 739 GF ++ + + + ++ D Y F + L A +YISY ++ N Sbjct: 605 GFLNIENINELNNSIADEQQYIENNQEVNNLDQTYQFGDVLSLASDGVYISYPIINV-SN 663 Query: 740 SERFPSVLVQE------LIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQN 793 + S+ Q+ L +Y+ + L+ + ++ L + D N Sbjct: 664 EKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFITTPQASLGYIVYLKNKTNDDISN 723 Query: 794 YQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE------TVPLETLQRFWAHPVRA 847 S QA ++ V P E + + L+ F+A+ Sbjct: 724 LLALT-PSNQALLFDNVIQASSFKNKPVNLTPALAQELYGNNINISISQLETFYANSYEY 782 Query: 848 FFQMRLQVNFRTEDS 862 F L ++ R E+ Sbjct: 783 FLTYGLHLHKRFENE 797 >UniRef50_C2BHK2 Putative uncharacterized protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BHK2_9FIRM Length = 1115 Score = 67.3 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 68/388 (17%), Positives = 150/388 (38%), Gaps = 63/388 (16%) Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSP-FIQAVFGSAPADRYLPYAISDRRARQSHPVLEA 453 +++ +P + +D+ V + D D Y I+ F +P + RR + +++ Sbjct: 315 KIIKTNPDIRYKDMAVYLTDPDQYENELIKT-FSRYE----IPIFLDKRRKMADNHIIKT 369 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR---------W 504 F++LL L + F ED+ +L+ ++ I+++ L ++ I+ + Sbjct: 370 FLALLRLKVNNFRQEDLFYILNSKLI----GISDKDANALINFLTYRKIKGSMFENDKYF 425 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL 564 +D+D + + + + + YD + + A+++ HL Sbjct: 426 AMDEDFYEKNLVNDPKK------------------DEKIAKKREEYDHVNLVRAKIL-HL 466 Query: 565 ASLLMQLNIWRRGLAQE--RPLEEWLPVCRDMLNAFFL-----PDAETEAAMTLIEQQWQ 617 L + N+ + LA + + + + + +NAF D + I ++ Sbjct: 467 TKGLDKKNMTVKDLATKIFKMIAD--SDIKKSINAFQAKLLENADLDDYKENEQIWDEFV 524 Query: 618 AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVC 676 AI+ + + ++PLS + + +I + + + R K+ Sbjct: 525 AILDQLVLLMGDRSLPLSRVVTIVEAVTRDIQIGLIPPSKDHLIVTDFARDRVSNKKINI 584 Query: 677 LLGMNDGVYPRQLA------PLGFDLMSQ---KPKRGDRSRRDDDRYLFLEA--LISAQQ 725 LLGM+D +P Q A P + + + K + R DR L +IS Sbjct: 585 LLGMDDAYFPSQKAKDYLISPDEMEELEKAKIDLKLYAKDR---DRAELLSLYKIISRSD 641 Query: 726 KLYISYIGRSIQDNSERFPSVLVQELID 753 KL SY S ++ + S++++++ Sbjct: 642 KLIFSY-ALSDKEGKDLNESLVIRDIRK 668 >UniRef50_Q02D21 ATP-dependent nuclease subunit B-like protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02D21_SOLUE Length = 987 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 114/735 (15%), Positives = 212/735 (28%), Gaps = 135/735 (18%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQRE-VEVLHDRLLAMLEEDPTLTP 405 A + +++ + S + P+ D ++ E VE+ R+ A + Sbjct: 215 EPATSLESLQRYLFSTDAVPVRDEDGTVEIFSTSGEALECVEIAR-RIGAR-----GIGF 268 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 + +++ + Y P + A +P + R +R+ +F++LL + R Sbjct: 269 DECAILLRSPERYQPLVV----EALRRAGIPAHCT-RGSRRPDAAGRSFLALLHCAEERL 323 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRY----LRQWVNESGIRWGIDDDNVRELELPATGQ 521 + L + + E + + ++ + G R L + Sbjct: 324 SASRFAEYLSLG------QMPESEEPRTPAAWERLLVDAAVIGGAARWETRLRGLREDFE 377 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 + + + L + M + L + Sbjct: 378 ------------------RRYAAAEEEEERARWRQRIDRLEALRAFAMPVIERLAALPER 419 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 EW+ L F L D + + + I GLG + L+ Sbjct: 420 ANWGEWIETLTA-LAEFTLNDPTRVLELLEELEPMREIGPVGLGE-------VLLVLGPR 471 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 Q+L R+ G V + + R + F+ V + G+N+G++PR A L Q+ Sbjct: 472 FQQLSSAPEGARY--GKVWVGGIEEARGMAFRAVYVPGVNEGLFPRPPAEDPLLLERQRE 529 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS--------------VL 747 G + R +D L A A + +SY + R PS + Sbjct: 530 ALG-IALRAEDTELLGIAAACATEHFALSYSRLDLLTGRVRVPSFYAFAAHRAAGGSEID 588 Query: 748 VQELIDYI--GQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG---ERQSY 802 V E + N ++ + L L Q + +S Sbjct: 589 VHEFEKRARSATGTRIGWPAPENAADAIDDAEFDLATLAPLTKGSGQYLKSLPGRAVESL 648 Query: 803 AREWLPAASQAGKAHSEFVQPLPFTLPETVPL-------ETLQRFWAHPVRAFFQMRLQV 855 W+ + A V + + L TLQ++ P R + L + Sbjct: 649 RARWMRWHAPWKAADGLVVDEIGDDALKRYRLGARAWSPSTLQQYARCPYRFALRGILGL 708 Query: 856 NFRTEDSEIPDTEP-----------FIL------------------EGLSRYQINQQLLN 886 + I +P F L L R +L Sbjct: 709 RAVENPTGIQRMDPAQRGELFHRVQFELLRDLASRELLPVSPATLAGALDR---LDAVLE 765 Query: 887 ALVEQDDAERLFR------------RFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC 934 + + +AE R G L A + W Q E+ + A Sbjct: 766 DVAAKAEAELAPAIPQIWRGEVQAIRADLRGWLQEKALRDADWTPQFYELS-FGLKDPAG 824 Query: 935 RQPGQSMEIDLACNGVQITGWLP--QVQPDGLLRW-----------RPSLLSVAQGMQLW 981 R P + G ++ G + + P G+LR +P + + +Q Sbjct: 825 RDPRSRKDAVEVEGGYRLQGSIDLVERHPSGVLRVVDHKTGRVPEPKPDTVGGGEALQPL 884 Query: 982 LEHLVYCASGGNGES 996 L L A G S Sbjct: 885 LYALAAEAIVGEPVS 899 >UniRef50_A8SJB4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJB4_9FIRM Length = 1152 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 82/531 (15%), Positives = 184/531 (34%), Gaps = 83/531 (15%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 I + EV + + + +++ DI + + +D YS I+ VF D Sbjct: 306 IRILKFKNIYDEVSFIAEEISKLVKI-KGYRYNDITLCMRSLDEYSYIIERVF----DDY 360 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYL 493 + Y + ++ + +P++ +S+L + D + + V L + +++E + L Sbjct: 361 NIDYFLDEKISIMENPIIILILSILDMKDKNYSYDSVFRYLKSGLT----GVSDEDIFLL 416 Query: 494 RQWVNESGI---RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPY 550 +V +GI RW D+ +W ++ + + + ++ Sbjct: 417 ENYVIANGIKGNRW-FDE--------------SWN---KSIVHSV---EEESDDEKLVKI 455 Query: 551 DESSGLIAELVGHL------ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAE 604 +E ++ + +L + + + + E L +++ F + Sbjct: 456 NEIKNIVISPIKNLHEKLKGRNTVKDICKYLYEFTLEIGL---FDRINNLVMNF--QNEG 510 Query: 605 TEAAMTLIEQQW---QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVN 660 Q W A++ E + + + S + + L+ + + V Sbjct: 511 NLYKAKEYSQVWGSFTAVLDEMVEFMGEEKIAYSKFINLIKTELENIELGIVPPSKDEVF 570 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR-----------GDRSRR 709 I T+ M+ K+ +LG+NDG +P+ + DL+S+ K + + Sbjct: 571 ITTVDRMKKPSTKIAFVLGVNDGNFPKNIVDN--DLISENEKESLKTMGFNFSNNNLLKT 628 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL-----------IDYIGQS 758 D+++L + A++KLYI++ S + S V+++ IDY+ Sbjct: 629 TDEQFLSYKTFSIAKEKLYITFP-ISDLEGKSLLVSRFVKKIKFIFENLEVESIDYLKDF 687 Query: 759 HYLPGDEALNCDESEARVKAHL--TCLHTRMPFDPQNYQ-------PGERQSYAREWLPA 809 + E + + + +++ + D N++ + Y E L Sbjct: 688 SIMDIFETFSKERLYQILVSNIEALNSNKLSENDKFNFREIIDFLIEDKDYKYKIEILKD 747 Query: 810 ASQAGKAHSEFVQPLPFT-LPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 K F V + L+ F P F L+ R Sbjct: 748 KLNYKKETENIKDYTSFLYESGNVSISKLENFMRCPFSYFINYGLRAKERE 798 >UniRef50_B7GQ32 ATP-dependent nuclease subunit B-like protein n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQ32_BIFLI Length = 1101 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 78/531 (14%), Positives = 163/531 (30%), Gaps = 115/531 (21%) Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 + ++P ++ D++V D+ SY I + F + +P I+ HP +A Sbjct: 289 KFIADNPEISYGDVLVTSRDLGSYQAQIASEF----TYQGIPINIAASSTMLDHPFADAI 344 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 + LL + +L +L + + ++T + + Sbjct: 345 LGLLDSATYELQPQSILRILRSGIFSRYLNLTPTAIDDI--------------------- 383 Query: 515 ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 ++ + W HL + L Sbjct: 384 ---ENQLNS--------------NNPATVWIDT---------DIPFAAHLQK-IRSLIQQ 416 Query: 575 RRGLAQERPLEEWLPVCRDM---LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 + + RP M L + + T+I + ++ + + + Sbjct: 417 AADVFRPRPSATVREALGGMVGFLTEYAQTIEGSAPVWTVIMNAFDDMVQQLGNDYFAEY 476 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSI--PFKVVCLLGMNDGVYPRQL 689 V + LA L + I R ++ ++PM S P++ V +LG ++ P Sbjct: 477 VG--IFARNLASTLAAQSIDSRPVSASAV--DVLPMSSPLHPYRYVIVLGCSESQLPAIP 532 Query: 690 APLGFDLMSQKPKRGDRSRRDDDRYLFLEA----------------------LISAQQKL 727 G L+ + D S+ + LEA + SA Q+L Sbjct: 533 HETG--LLDDGERL-DLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFNGVVASATQQL 589 Query: 728 YISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRM 787 ++Y +S++ N+ + S + + + E K + + T Sbjct: 590 SMTYP-KSLR-NAAQACSPYISQW-----------ETGTSDTSEIIGASKRAVPTVETEY 636 Query: 788 -PFDPQ-NYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPV 845 P D + Y+ R Y + + ++ ++ +P Sbjct: 637 RPLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNA---------SVSAIETYYRNPY 687 Query: 846 RAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER 896 F + L+VN + LEG + + + +NA +E+ ER Sbjct: 688 EYFLKYGLKVNVANAFAFDA-----ALEGTFYHAVLEHAVNAWIERHKNER 733 >UniRef50_B0RA37 Nuclease subunit B homolog n=1 Tax=Halobacterium salinarum R1 RepID=B0RA37_HALS3 Length = 1018 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 65/382 (17%), Positives = 123/382 (32%), Gaps = 70/382 (18%) Query: 380 HSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAI 439 +P+RE+ + L L P D+ V+ ++YS +++ F + +P+ Sbjct: 253 PTPEREIRFVARELRTELANGRD--PDDLAVVAPGTEAYSGYVEDTFDTFD----IPHVT 306 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 + LL+L + +ED+ +LL P++ + Sbjct: 307 TAASQLNQTFAGSVVHDLLNLAEPDPRAEDLTSLLANPLV---------DI--------- 348 Query: 500 SGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAE 559 + + R + D+ +A Sbjct: 349 ----------------VDTDQANAVTAAARR----------RDTVSVSPLLDDVDDEVAS 382 Query: 560 LVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAI 619 LV LL L R ++ R +++ F +A TE + EQ + Sbjct: 383 LVE---ELLATLEPLRTDDIEDAT-----ETLRRLMDDRFDLEAATEDYASGAEQAVEQR 434 Query: 620 IAEGLGAQYGDAVPLSLL------RDELAQRLDQE--RISQRFLAGPVNICTLMPMRSIP 671 + + L+ + + D R+ QR G V + L+ R Sbjct: 435 AYDLVDEVLSSFESLAAVNSDLSPLALFTRAFDGVAIRVPQRAAGGHVEVMGLLDARMRS 494 Query: 672 FKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYI 729 F+ V L+G+ +P F ++ P+ R RYLF L++ +L I Sbjct: 495 FEKVFLVGLTSEHFPVTPERPAFFEEMTDADPRFDTGDERLRGRYLF-ATLLANVDELTI 553 Query: 730 SYIGRSIQDNSERFPSVLVQEL 751 + + D S S ++ EL Sbjct: 554 T-TPETGDDESAVVRSPVLDEL 574 >UniRef50_C4Z483 Putative uncharacterized protein n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z483_EUBE2 Length = 1109 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 68/424 (16%), Positives = 136/424 (32%), Gaps = 62/424 (14%) Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 +N + R+++ R D+ I + + E+ ++ + Sbjct: 296 FKNSEELDFLEQNLFRNNSGRFNQKTDN-IVIYEGAVAKEELTFAAGEIIRLTRLC-GYR 353 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 +I ++ AD+D Y + +PY + +R +P + A L + ++ Sbjct: 354 YNEIAIVTADMDGYGKLAANILKQND----IPYFLDYKRHVTDNPFIAAINGALGIIENN 409 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV--------RELEL 516 + + +L L + E + L + GIR G + Sbjct: 410 YSYDSILGFLRT----GMSGMEREDIDLLDNYCVAVGIR-GRGKWHEPWIRKFRGTVNNT 464 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 ++ R + + VL +A++V L L R Sbjct: 465 DLEKLNSLR---------TMITDMLDPLEEVL--KSKESNVADMVKALYEFL-----VRE 508 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 + Q+ + LN E + + + A + V + Sbjct: 509 DMEQKVSV----------LNDSEYTGDEYVQLYKKVIEVLDKMYALLGS----EKVGIKE 554 Query: 637 LRDELAQRLDQERISQRFLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 LA + +I V I + R KV+ +G+NDG P++ Sbjct: 555 FNKILASGFQEIKIGLIPQTNDCVVIGDIERTRLDNIKVMFFVGINDGNVPKKADSRSVL 614 Query: 696 LMSQKPKRGDR------SRRD----DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 S + D+ S R+ YL+L SA +KLY+SY ++ + + PS Sbjct: 615 SESDREYLEDKGIVMSASVREKAFTQRFYLYLIMTKSA-EKLYMSYAVKN-SEGAALMPS 672 Query: 746 VLVQ 749 +++ Sbjct: 673 YIIR 676 >UniRef50_D1PLS4 Putative ATP-dependent nuclease subunit B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS4_9FIRM Length = 1094 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 92/586 (15%), Positives = 183/586 (31%), Gaps = 91/586 (15%) Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 V+ D Y ++ F + +P + ++ A ++L L S S Sbjct: 316 AVICRDAAQYLGPLRYEF----RLQNIPLFCDEATTPENTAPARAVHAVLDLARSGVSSR 371 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 VL LL ++ ++ E L + W + + WR Sbjct: 372 TVLRLLKTGLV----NLPERQQTALENY----AYTWSLKAAD-------------WRAPF 410 Query: 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL---------ASLLMQLNIWRRGLA 579 TR GYA + ++ + + + E + A+L Q+ ++ + L Sbjct: 411 TRSAAGYADVERAEDVRTREEAEAARVFLMERIQKFLPRVKNAGAAALTKQVYLFLQSLG 470 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 E L R E ++ + A+ LG + + L Sbjct: 471 AEDTLNALAETLRG--QGRMPEADEVLREWNVVMGLLNQL-AQLLGEEELPPADYAELFT 527 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF----- 694 L + D I Q V + T MR V ++G+ +G +P+ G Sbjct: 528 LLLRTTDMGHIPQSL--DSVILTTAGRMRLPETDAVFVVGLLEGEFPKTPGDQGLLTHAD 585 Query: 695 --DLMSQKPKRGDR--SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 ++ Q + D ++ + F +A+ +A+ L++S+ G + ++ S + Sbjct: 586 RDAMIRQGAELPDCFENKVLREGVCFYKAMTAARSFLWLSWPGAAHAEDDT-PASSALAP 644 Query: 751 LIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAA 810 + + P L + A + + E P + Sbjct: 645 VRRLLQVPFAGPSTAELGASPAAALDILGVISQQPGR---EGEGEALRAALEDAEGTPQS 701 Query: 811 SQAGKAHSEFVQPLPFTLPETVPLETL---------QRFWAH---PVRAFFQMRLQVNFR 858 + +A + + +T LE L RF + P F Q L+ R Sbjct: 702 APGYEAVRRAREKAEPAVRDTGALEKLLGPGLRVSPTRFEKYQTCPFGYFMQFVLRAAPR 761 Query: 859 TEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWE 918 + P+ I+ L + ++E R G AF ++ E Sbjct: 762 QKAELAPN-------------ISGTLTHWVLENA--------LRRQG----AAFKDLTAE 796 Query: 919 TQCQEMQQLADRVIACRQPGQSMEIDLACNGVQ--ITGWLPQVQPD 962 +++L PG ++ + ++ + G L +Q D Sbjct: 797 ELQALVEELVAEYTQANLPGITVRMQYLIERIRRNLVGLLGFIQRD 842 >UniRef50_A5ZAT7 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAT7_9FIRM Length = 1144 Score = 63.4 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 66/445 (14%), Positives = 139/445 (31%), Gaps = 61/445 (13%) Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 I + + N+ + S + + H +P+ E + R+ ++ D Sbjct: 292 IRDNKELTFLEKNLFRNNSSKYRENCKA----LEVHSMSNPREEAAYVAGRISELI-VDK 346 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 DI V+ D+D Y +I+ F +P I + S+P ++ + + + Sbjct: 347 GYRYNDIAVITGDMDGYYRYIEEEFSKNN----IPAFIDHKHNIASNPFVDGIKAAIEIV 402 Query: 462 DSRFVSEDVLALLDVPVLAARF-DITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 + F E V L + F I E + + +V +SG R G Sbjct: 403 EKDFSYETVFHL-----IRLGFLPIDREAVDIMENYVLQSG-RRGFKSYGRL-------- 448 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 W G E Q+ E + E + + + + Q Sbjct: 449 ---WEKAYK----GMTAEELDMVNQAREKLVEIIRPLREELKKKKATVREYTKAVYQFVQ 501 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 ++ + R E + ++ + + + + + Sbjct: 502 ANNMQRQIDDYRIEFQNQGEISRAKEYEQVYV--TIITLLDRIVELMGDEVLTIKEYKQI 559 Query: 641 LAQRLDQERISQRFLAG--PVNICTLMPMRSIPFK-VVCLLGMNDGVYPRQLAPLGFDLM 697 L + ++ G V + + R K ++ +G+NDG+ P+ G Sbjct: 560 LQAGFESVKVG-IIPPGLDTVMVGDIERTRLKDTKRIIFFMGVNDGIIPKAGQAGGI--- 615 Query: 698 SQKPKRGDRSRRDDDRYLFLEALISA----QQKLYISYI------------GRSIQDNSE 741 D R ++ ++ A + +QK Y+ I +S D + Sbjct: 616 -----ITDTDREFLEKNNYILAPTATDNVFKQKFYLYTIFAKPTEKMCITFSKSGSDGAT 670 Query: 742 RFPSVLVQELIDYIGQSHYLPGDEA 766 R S ++ L++ + DE+ Sbjct: 671 RRKSYIISTLMNLFENLKIIDEDES 695 >UniRef50_D2PY24 ATP-dependent nuclease subunit B-like protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PY24_9ACTO Length = 1050 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 54/326 (16%), Positives = 100/326 (30%), Gaps = 38/326 (11%) Query: 443 RARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGI 502 R + + +L+L D D+ L F + + +G+ Sbjct: 332 RPVHERALARTLLEVLALVDHDLPRADLFRALANAPTRD-FTGERIPVPQWERLSRAAGV 390 Query: 503 RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVG 562 G D D + +A E + P + Sbjct: 391 VRGDDWDVRLARYADTERR-----------------TADQERGAEDPRPAVARRAEHNAS 433 Query: 563 HLASLLMQLNIWRRGLAQERPLEEWLPV-------CRDMLNAFFLPDAETEAAMTLIEQQ 615 H L RR L +E W + D+L + E + A +E Sbjct: 434 HALRLHAFAVELRRRLNAAALMESWSELSHVVLRLFHDLLGDYASLPVEEQYAAVAVEGT 493 Query: 616 WQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVV 675 + + + G L++LRD L L Q V + L + VV Sbjct: 494 LRGLST---LDELGTPASLTVLRDVLDLELQQSLPRVGTFGTGVLVAPLSASIGLSVDVV 550 Query: 676 CLLGMNDGVYPRQLAPLGFDLMSQKPKRG-------DRSRRDDDRYLFLEALISAQQKLY 728 ++G+ + +YP +L L+ + + R R D + L A + ++ Sbjct: 551 FVVGLAEDLYPGRLHEDA--LLPHRVREAAAPELASARDRLDRKQRHLLAAFSAGASRVV 608 Query: 729 ISYIGRSIQDNSERFPSV-LVQELID 753 S+ ++ +S R P+ L+ L + Sbjct: 609 ASFPRGDLRRSSRRLPTRWLLGTLRE 634 >UniRef50_UPI0001C314BA ATP-dependent nuclease subunit B-like protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314BA Length = 986 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 91/604 (15%), Positives = 170/604 (28%), Gaps = 133/604 (22%) Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED-PTLTPR 406 RA R + D+ + V + E+E++ +L +L + P Sbjct: 261 RAPLHALERGLFEPAAARDAEAGDA-VRLLVAGGERAEIELVAATVLELLGDGVPG---E 316 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL-------LS 459 +I V++ + ++ VFG+ L + + P+ + + Sbjct: 317 EIAVVLRTPARSASLVEQVFGAYAIPHTLDWRV---------PLAHTALGRGLLALARCA 367 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEE-GLRYLRQWV---NESGIRWGIDDDNVRELE 515 L + D+LA L P R ++ + L R+ + E+ W ++ Sbjct: 368 LLPADARPADLLAYLRTPGRLQRLELADRLELTVRRRALLSMEEARRAW---EEARGGWP 424 Query: 516 LPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 L L R+ ++ A L+G LA L + Sbjct: 425 LRE---------LDRL------------------RGAAADGPAALLGALAREARTLFVAP 457 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 Q R L+ L+A E ++ ++ + +S Sbjct: 458 HR-GQARVLDAAEEADARALSALLRALEELGELAAAEPRRAAELLEPEALLAALGELEVS 516 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF- 694 L G V + + +R+ F V + G+ +G +PR P F Sbjct: 517 L--------------GATAREGAVLVADPLAIRARRFDTVIVCGLQEGEFPRPAHPEPFL 562 Query: 695 --------DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 + ++ D+RYLF +++L +S D + PS Sbjct: 563 SDDVRRELNAVAGLRLPLREDALADERYLFYATASRPRRRLILSCRDADE-DGNPALPSF 621 Query: 747 LVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREW 806 V ++ + + L H P + + A Sbjct: 622 FVDDVRALLRE----------------------LPERHR--PLSAVTWPLDAAPTDAERE 657 Query: 807 LPAASQAGKAHSEFVQPLPFTLP------ETVPLETLQRFWAHPVRAFFQMRLQVNFRTE 860 A A + + L E + L+R+ PVR F + LQ Sbjct: 658 RAEALAAPRELPHPIGSLSEAATALLRQREVLSAGALERYARCPVRWFVESELQ------ 711 Query: 861 DSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQ 920 E F + A+ + R A P E Sbjct: 712 ------PERFEPDP-----------EAMARGSCIHSVLERTLARVSWPIAVAELPAIEQV 754 Query: 921 CQEM 924 +E+ Sbjct: 755 VREV 758 >UniRef50_C5RAZ7 ATP-dependent deoxyribonuclease, subunit B n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAZ7_WEIPA Length = 1188 Score = 59.6 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 91/579 (15%), Positives = 180/579 (31%), Gaps = 103/579 (17%) Query: 370 LDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA 429 D +I H+ +EVE + + + RD ++M D+ Y + AVF Sbjct: 317 ADDAIEIWQTHTRYQEVEQMARLIRQEVAAGKH-RYRDYLLMTRDLGQYENIMPAVFARY 375 Query: 430 PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAA-------- 481 +P + R +HP++ LL L + + DV+ LL +L Sbjct: 376 E----IPIFMDLDRPMSAHPLVAFLDKLLHLAPA-YTMTDVMGLLKTELLIPDGVLLADY 430 Query: 482 RFDITEEGLRYLRQWVNESGIRWGIDDD--NVRELELPATGQHTWRFGLTRML-----LG 534 R + E L + + +G +W D L + + T R+ L Sbjct: 431 REALAETENYVLAKNI--AGWQW-TDKTPWQYDRQALTSDDEVT----RERVASKDAQLA 483 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLL------MQLNIWRRG-------LAQE 581 + L + + + E+ L + + +L WR + + Sbjct: 484 MIHDQISQTVAPFLHHLQQAPTAREMARELYNFITQIGIQKRLINWRDNAIEQGDLWSAQ 543 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 +P + W +L+ F + +++ + A A + + + Sbjct: 544 QPEQVWRVFIS-ILDDFVQVFDSEVMTLEVLQDVFTAAFDSAKYAGIPATMDQVHISESG 602 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 + F A N+ + +++I ++DG L ++ ++ Sbjct: 603 IVQRTGYETVIVFGATNHNLPAVTRIKAI---------LHDGDRAILQPALPDNVFLKET 653 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 + + L A++ A Q+L +Y S D S + PS V I + L Sbjct: 654 SE---QQMAQESLLMYRAMMVADQRLIWTY-ATSDGDGS-QQPSTYVTR----IQKQFQL 704 Query: 762 PGDEALNCDESEARVKAHLTCLHTRMPFDP------QNYQPGERQSYARE----WLPAAS 811 P + ++ +H + P N Q +R + + W Sbjct: 705 PLVQ----FDALPDPMSHHVDDYVGTPTSTIAQIIIANRQAKQRGTVDGQLSAAWRNLIQ 760 Query: 812 QAGKAHSEFVQPLP-----FTLPETV---------------PLETLQRFWAHPVRAFFQM 851 Q K +Q L PE + + L+ + +P F Q Sbjct: 761 QVQKIAPYQLQHLLGSLHYQNEPEKLQPVLVNTLFGHDLKASISRLESYSRNPYEFFLQY 820 Query: 852 RLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 L++ R L + + +L L + Sbjct: 821 GLRLQERQV---------LQLTPAEKGTLMHAMLEQLFQ 850 >UniRef50_C0QS88 Putative uncharacterized protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QS88_PERMH Length = 921 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 71/396 (17%), Positives = 141/396 (35%), Gaps = 73/396 (18%) Query: 390 HDRLLAM----LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRAR 445 D ++ + L+ I V++ D+ SY I++VF + +PY +S+ Sbjct: 258 RDEIVKIAKSILKIKENTRWYKIGVVINDLGSYLKDIKSVF----QEYNIPYYLSEENRF 313 Query: 446 QSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWG 505 + L SL ++ F + LL+ I++E L Sbjct: 314 IDQLPFKKMFLLFSLKENNFSK---IDLLN--------SISKEILN-------------- 348 Query: 506 IDDDNVRELELPATGQHTWRFGLTRM--LLGYAMESAQGEWQSVLPYDESSGLIAELVGH 563 IDD ++ E +++ G + LL + + ++ Sbjct: 349 IDDIDISSFEKDLIE-NSYEEGYESIIKLL------SDKGYNGII--------------- 386 Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEG 623 L + + + L + + D++ FF + TE + ++E I Sbjct: 387 ------DLLRSIKKIPERGSLNDLIQNYTDIIERFFKKNEHTEKFLNILEN----IQLNH 436 Query: 624 LGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDG 683 + + + S L L++E I +R V I T I F + + MN+G Sbjct: 437 VLKKLYPEITYSEFNSILLHYLEEEDIDRRLKGDIVQIRTPNISEGIIFDYLFFVDMNEG 496 Query: 684 VYP---RQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE--ALISAQQKLYISYIGRSIQD 738 YP + + L + ++G + ++ ++ + +YISY R + Sbjct: 497 KYPSIIKDDPVINNTLRVKLEEKGLPKLNASYWQQIITFISIFNSSKNIYISYKNRDDK- 555 Query: 739 NSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 ++ PSVLV+EL+ Y + L ++ E Sbjct: 556 GNDLSPSVLVEELLRLNYGRSYFENGDTLKLEDPEE 591 >UniRef50_Q04T79 ATP-dependent DNA helicase n=6 Tax=Leptospira RepID=Q04T79_LEPBJ Length = 730 Score = 59.2 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 90/248 (36%), Gaps = 31/248 (12%) Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVC--RDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 L SL L + + L + +++ E A Q+ I Sbjct: 458 LYSLFSDLIEKVEKSSSPSEIA--LELLNRSGLVSHLRDEGTEESIARLENLQELVNSIE 515 Query: 622 EGLGAQYGDAVPLSLLRDELAQ-RLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGM 680 E Y L + L Q L + L VN+ T+ + + FK+V L G+ Sbjct: 516 E-----YEKNSDSPSLEEYLNQISLITSEEESKELTDYVNLMTVHNAKGLEFKIVFLSGL 570 Query: 681 NDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS 740 +G +P ++ GD +++R LF AL A+++L++SY S + Sbjct: 571 EEGTFPHSMSLEDSHF-------GD----EEERRLFYVALTRAREQLFLSYCRTSRKFGK 619 Query: 741 E--RFPSVLVQEL-----IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ- 792 R PS + E+ ++ + + H + R++ + P DP Sbjct: 620 VEDRIPSRFLSEIPEECFVERVSREHTARSPQGAPLASKTRRIEEKFNSGFSSTP-DPTN 678 Query: 793 -NYQPGER 799 +PG+R Sbjct: 679 LYLKPGDR 686 >UniRef50_C1ZCN1 ATP-dependent nuclease, subunit B n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCN1_PLALI Length = 1113 Score = 59.2 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 117/371 (31%), Gaps = 41/371 (11%) Query: 568 LMQLNIWRRGLAQERPLEEWLPVCRDMLNAF--FLPDAETEAAMTLIEQQWQAIIAE--- 622 L L L+ E W+ + +++ + FLPD+ + A + Q I+ Sbjct: 469 LETLLRVTEKLSTSHSFEGWIDLWAAIISQWTPFLPDSSNDRADRADWELLQRILRRVSR 528 Query: 623 --GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIP-FKVVCLL 678 G + + + L E+ L ER + G +++ R + + V ++ Sbjct: 529 CRGTWQEPSERLSLQAWWSEVEACLSVERSLPPAPSPGMISLIDPAQARFLDSARCVVIV 588 Query: 679 GMNDGVYPRQL-------APLGFDLMSQKPKRGDRSRRDDDRY-----LFLEALISAQQK 726 G + YP L++ + R++D LF + + A + Sbjct: 589 GATEQAYPAADHTNCLYSHAERQSLIAAGLRL----VREEDHSSEETLLFWQLVSMATEN 644 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP---GDEALNCDESEARVKAHLTCL 783 L I+Y + + E FPS V D + LP G + + E + L + Sbjct: 645 LLITYPAINAK-GQELFPSPFVLAACDLFTKDVQLPRHVGSIHVMPEREEIHTRRDLRIV 703 Query: 784 HTRMPF--DPQNYQPGERQSYAREWLPAASQ-----AGKAHSEFVQPLPFTLPETVPLET 836 ++ G + + ++ + +E L E E Sbjct: 704 AFEQAMTGHAGWWKTGLLDTTEGQAYRNMARGLPMLQARYRTEGFTEYEGMLNEPALREE 763 Query: 837 LQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER 896 R + P F RL++ + E L Q++ N L+ Sbjct: 764 FARQYG-PEHQFSVTRLELYANCPFRFWIE-EVLGLAPRETKQLST---NYLMRGTALHS 818 Query: 897 LFRRFRAAGDL 907 +G L Sbjct: 819 ALASLLGSGRL 829 >UniRef50_A5GQG6 UvrD/REP helicase n=18 Tax=Cyanobacteria RepID=A5GQG6_SYNR3 Length = 784 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 89/277 (32%), Gaps = 44/277 (15%) Query: 542 GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP-------VCRDM 594 W V + L L +N R AQ P E + R++ Sbjct: 490 PLWDVVSDGEAVRSLGGRSAKGLLQFCELINGLREQ-AQVAPPSELIQQVLEKSGYLREL 548 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 + E E +++ A + + GD + ++ + R Sbjct: 549 ITE---ATDEAEERRRNLQELVNAALQYQEENEEGDLEGFLASAALASDADSKDTAADR- 604 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 V + TL + + F VVCL+G+ G++P D + +++R Sbjct: 605 ----VTLMTLHSSKGLEFPVVCLVGLEQGLFP------------SYRSLDDPASLEEERR 648 Query: 715 LFLEALISAQQKLYISYIGRSIQD-----NSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 L + A+++L++S+ S + PS+ + EL + + Q + Sbjct: 649 LCYVGITRAKERLFLSH--ASERRLWGGMREPAVPSIFLAELPEALVQG---------DI 697 Query: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREW 806 S L D QP R S AR W Sbjct: 698 PRSGGAALRREQRLERLTRVDRAEAQPKARVSAARSW 734 >UniRef50_A2RH76 ATP-dependent helicase/deoxyribonuclease subunit B n=5 Tax=Lactococcus lactis RepID=ADDB_LACLM Length = 1099 Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 70/418 (16%), Positives = 148/418 (35%), Gaps = 81/418 (19%) Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 IL+L++R V E D K + + E+E + + + + Sbjct: 271 ILDLDSRFVITDEKIELKAEDEKY--------FRIWEAENQKVEIERVAKEIRQKIIQGA 322 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 +D V+V D +Y ++ VF +P+ + + HP++ F SL ++ Sbjct: 323 F--FKDFTVLVGDPAAYEITLKEVFDLYE----IPFFYAQEESMSQHPLVIFFESLFAIK 376 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 + + ++DV+ LL + ++ EE + Y +V ++ ++ + Sbjct: 377 KNNYRTDDVVNLLKS-KVYTDANLDEEVIDYFEYYV--------------QKYKISGRKK 421 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 T F + E+ + +E +L+G + L + L R+ Sbjct: 422 FTEEF-------------IESEFSQIELVNEM---REKLLGSESPLQVFLGNNRK----- 460 Query: 582 RPLEEWLPVCRDMLNA----------FFLPDAETEAAMTLI-EQQWQAII---AEGLGAQ 627 + ++W+ + +L F + + E M EQ WQ +I E L Sbjct: 461 KTGKKWVSDLQGLLENGNVMTNMNAYFSAAELQNEHQMADKHEQVWQMLISTLNEFLAVF 520 Query: 628 YGDAVPLSLLRDELAQRLDQERISQ-RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 + + D L L + Q VN+ + K + +G++ +P Sbjct: 521 SDEKLKSVEFLDILLAGLKNAKYRQIPANVDVVNVKDYELVEPKTNKYIYAIGLSQTNFP 580 Query: 687 RQLAPLGFDLMSQKPKRGDRSRRDDDRYL--------------FLEALISAQQKLYIS 730 R L+S + + D+++++ L + SA++ L +S Sbjct: 581 RIKKNST--LLSDEERLEINQTTDENQFIEQLNVANYQKNQFTVLSLINSAKESLVLS 636 >UniRef50_Q11Q08 DNA-dependent ATPase I and helicase II n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11Q08_CYTH3 Length = 1041 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 68/396 (17%), Positives = 125/396 (31%), Gaps = 80/396 (20%) Query: 375 TFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY 434 H S ++E LH + + ++ V+ + I+ R Sbjct: 392 ELHEEASVVEQLEKLHHEGVDL---------SEVAVIYRKHSKVADIIK-----VLEKRK 437 Query: 435 LPYAISDRRARQSHPVLEAFISLL-------SLPDSRFVSEDVLALLDVPVLAARFDITE 487 +P I P ++ I +L PDS E + L+ F+I Sbjct: 438 IPLNIKQSINVLHLPFVQNLIDILAYIQKENEYPDS--GEEQLFRLMHFEY----FNIDP 491 Query: 488 EGLRYL----RQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE 543 + + R+ S IRW + ++ EL H+ L ++E+ Sbjct: 492 TDIANISRKTRRTSESSAIRW--RELMSKKEELAKLNLHSLPSIL-------SLEANLTY 542 Query: 544 WQSVL---PYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 WQ I G L+ ++ + E+ W F Sbjct: 543 WQKEFHNITLQVLFEKITTRGGILSWIMN---------SSEKT---WYMQVLTTFFDFLK 590 Query: 601 PDAETEAAMTLIE--QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 + ++L E Q ++ + + Sbjct: 591 EETARNPLLSLKEFLSTIQKMLDNDVRLNLQKIIHAE---------------------KG 629 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQ-LAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 VN T + + ++ V L+G N + Q GF + S + + + +D+R LF Sbjct: 630 VNFVTAHSSKGLEYRYVFLIGCNSRQWEGQAERSFGFKIPSTITENVEHDKEEDERRLFY 689 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 AL A++ LYISY + + + E S + EL + Sbjct: 690 VALTRAKEYLYISYPAKDVNE-KELVCSRFLVELTE 724 >UniRef50_B1MZM3 ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Leuconostoc RepID=ADDB_LEUCK Length = 1171 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 76/526 (14%), Positives = 170/526 (32%), Gaps = 77/526 (14%) Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAI-SDRR 443 E++ + R+ +L P L RDI+++ D+ Y+ I V LPY + +D++ Sbjct: 330 EIQEVARRIRQLLVAQPDLRLRDILILARDLTPYTGHIPEVMQQFD----LPYFLDTDQK 385 Query: 444 ARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFD---ITEEGLRYLRQWVNES 500 HP++E ++LL RF + V+A+L +L D + E + +++ Sbjct: 386 MTN-HPLVELLLNLLRPAKERFQYQQVMAILKTGLLRPYTDGSLVPEGDFFDIVSYLD-- 442 Query: 501 GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL 560 L + TWR L E E V+ D++ E Sbjct: 443 -----------NYLYANQPFERTWRDLDHPFTLFTVSEDEDDEDARVVLDDKTVNRRIET 491 Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLI-------- 612 + ++ + ++ L Q + + + + L + + +A TL+ Sbjct: 492 LRRF--VIDAFDSLQQQLNQAQTMRQAATLIILWLEKYHVTEAILSQRDTLLAAGELSRS 549 Query: 613 ---EQQWQAI---IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ-RFLAGPVNICTLM 665 E+ W+ + + + + + L + L + S + I Sbjct: 550 REGEEVWEMMTQTLDDIVAIDGDERFELEKFKAILVAGFEGATFSGIPNNLDQLTISEAG 609 Query: 666 PMRSIPFKVVCLLGMNDGVYPRQ---------------LAPLGFDLMSQKPKRGDRSRRD 710 ++S ++ + +G P Q L + + + + + Sbjct: 610 IVQSNDYQYLFFIGGTRNNLPAQLKSRALINDAERLIVQPALQENSTPKYLQNTAQQQMA 669 Query: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 ++ LF AL +A + + +SY S + L+D + + ++ Sbjct: 670 EENLLFYGALTAATKNIVLSYPALDAG-GQISDMSPFFKRLVD----AFNITVNKVTATP 724 Query: 771 ESEARVKAHLT--CLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFT- 827 + + + T + +Y + + + Sbjct: 725 ATSQALLKYYVGSVRSTLGELVKIAASQQQTSAYQALRNTINQSEPERLERVLSAPNYKN 784 Query: 828 -----LPE----------TVPLETLQRFWAHPVRAFFQMRLQVNFR 858 PE + + L+ ++ +P+ F Q L + R Sbjct: 785 QTETLKPELVQALFGETLNMSISQLESYYNNPLAYFLQYGLALKER 830 >UniRef50_D1CD72 UvrD/REP helicase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD72_THET1 Length = 779 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 116/309 (37%), Gaps = 39/309 (12%) Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLP-----DSRF----VSEDVLALLDVPVLAARFD 484 Y +A+ R QS PV EAF S +P +RF +DVLA L ++ Sbjct: 359 YSDFAVMYRTNSQSRPVEEAF-SRYRIPYQIIGGTRFYERREVKDVLAYLR--LIH---- 411 Query: 485 ITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH-TWRFGLTRMLLGYAMESAQGE 543 LR+ + + GI ++ LE A+ H + + + LG G Sbjct: 412 -NPHDAASLRRIIENTPSGRGIGKGTMKTLEDLASRAHISLWDAIE-IALGIKSLEEVGA 469 Query: 544 WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDA 603 + L + E + L L+ +L R L ++ + + +F A Sbjct: 470 FLPNLEIPKLQSKAKESLKQLVGLIYELREQRDILTLPHLIDT--LLIKSGYASFLSSGA 527 Query: 604 ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICT 663 E + + +I + +A+ + L++ L + + + V + T Sbjct: 528 EEDLERLENARDLISIAQDYAAIDTSEAL-VEFLQEV---ALQSDVDTMQNNGNQVTLIT 583 Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR-SRRDDDRYLFLEALIS 722 L + + +KVV ++G +G+ P + DR S +++ L + Sbjct: 584 LHAAKGLEYKVVFIIGFEEGLLP-------------HARSMDRESDIEEECRLAYVGVTR 630 Query: 723 AQQKLYISY 731 A +KLYISY Sbjct: 631 AMEKLYISY 639 >UniRef50_A4W0M6 ATP-dependent helicase/deoxyribonuclease subunit B n=6 Tax=Streptococcus suis RepID=ADDB_STRS2 Length = 1088 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 71/394 (18%), Positives = 132/394 (33%), Gaps = 70/394 (17%) Query: 367 LDPLDSS-ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 L P D I + + EVE + + +DI++++ D+DSY I + Sbjct: 287 LTPADQEKIQLWEVVNQKEEVEQVATAI--RQHVHQGARYKDILLLLGDVDSYKLQIGKI 344 Query: 426 FGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDI 485 F +PY HP++ SL L RF +ED+L LL + A I Sbjct: 345 FDKYD----IPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYA---SI 397 Query: 486 TEEGLRYLRQWV------NESGIRWGIDDDNVRELELPATGQHTWRFGLTRM--LLGYAM 537 +++ L ++ ++ + + + + + LT + L M Sbjct: 398 SQKELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIM 457 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN------IWRRGLAQERPLEE---WL 588 E ++ A L+ + L ++ R L++ +E W Sbjct: 458 EPLNQLFK-----AGPQSGTA-LLEKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVW- 510 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 +L F + L + AI+ G+ A + VP ++ Sbjct: 511 KSFTHLLENFHQIFGKE----KLKMDDFLAILQAGMQASHYRTVPATV------------ 554 Query: 649 RISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF---------DLMSQ 699 VN+ + + K V +GM +P+ +L+S Sbjct: 555 --------DVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSA 606 Query: 700 KPKRGDRSRRDDDR---YLFLEALISAQQKLYIS 730 R D R++ + + L SA ++L IS Sbjct: 607 SSSRFDLVSRENIKKNHAAMMSLLNSATEQLVIS 640 >UniRef50_B2UPY5 UvrD/REP helicase n=2 Tax=Verrucomicrobia RepID=B2UPY5_AKKM8 Length = 669 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 17/186 (9%) Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA-EGLGAQY 628 QL LA L + + A + D +AA +Q+ Q ++ G ++ Sbjct: 486 QLCYTLDELAPAGKLAGPASMLLSINEAVY--DEYMQAAFENYDQRRQDLLHLAGFSERF 543 Query: 629 GDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688 L + L D E + F G V + T+ + + + VV L+G+ DG++P Q Sbjct: 544 ESTEDF-LSQLSLLGNTDDESAAADFSGGSVTLSTIHQAKGLEWSVVFLIGLCDGMFPHQ 602 Query: 689 LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISY---IGRSIQDNSERFPS 745 GD + +++R LF + A+ +LY++Y R+ + PS Sbjct: 603 RVIDD----------GDLAGLEEERRLFYVGITRAKDQLYLTYPRWNCRAQGGTFMQMPS 652 Query: 746 VLVQEL 751 + E Sbjct: 653 RFLDEF 658 >UniRef50_B9EAN7 ATP-dependent nuclease subunit B n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EAN7_MACCJ Length = 1118 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 76/400 (19%), Positives = 132/400 (33%), Gaps = 51/400 (12%) Query: 404 TPRDIIVMVADIDSY-SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 +DI+V+ D +SY I +PY + H +E SLL Sbjct: 322 RFKDIVVLYRD-ESYVKQLIDVC-----RKHQIPYHTDYKELMIHHKAIELIRSLLDAFK 375 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGI---DDDNVRELELPA- 518 + E + L ++A F EE L L + I G+ D + R+L Sbjct: 376 TNMRMEHLFRALKTGLIAHEFK-REEDL-LLIDMLENVMIERGMYYDDLIHKRKLFYDEK 433 Query: 519 --TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 Q W LL Y + P+ E ++ G + + + Sbjct: 434 DVYEQDQWDA-----LLQYI----DYLLSVIEPFKER--IVNAQSGR--AFASAIYSFML 480 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 ++ L + + +D + + +T + Q + V + Sbjct: 481 SISLPEYLMQHKDMAKDNGEQYIALTFD--QILTGLNQVLDDFVLIMDEVTLDYKVMCDI 538 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 + D L+ Q + I L + K V + G+ND + PR + L Sbjct: 539 I-DVGFLALEYNAPPQGL--DQIQILNLDLAKVENKKYVFVCGVNDDILPRPMKEDA--L 593 Query: 697 MSQKPKR-----GDRS-------RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 ++ + KR GD D+ ++F A+ AQ +YISY ++ + R P Sbjct: 594 ITDQEKRMMQEIGDIQLAPTTDVLIQDEWFVFYNAVTHAQHSVYISYSLMNMNQEAMR-P 652 Query: 745 SVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLH 784 S + L Q H D L+ + + H H Sbjct: 653 SRYLARLE---RQLHLEVQDMTLDMNPEDCITTYHAGIKH 689 >UniRef50_A4IYZ2 ATP-dependent DNA helicase/UvrD/REP helicase n=21 Tax=Francisella RepID=A4IYZ2_FRATW Length = 671 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 72/201 (35%), Gaps = 28/201 (13%) Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN---------AFFLPDAETEAAMTLIEQ 614 L S + ++ + ++E + ++ + + E I + Sbjct: 452 LISFKDLILNTQQQINTSISVQELKNIINSFIDNISYRQWLIDSSSSEKQAEFRYANIIE 511 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRD--ELAQRLDQERISQRFLAGPVNICTLMPMRSIPF 672 + I+ + Y L+ + + L LD++ + V I T+ + + F Sbjct: 512 VTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDNEDKN--DNQVQIITMHASKGLEF 569 Query: 673 KVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYI 732 K V ++GM +G+ P Q + +D+R L A+ A++ L I+ Sbjct: 570 KKVYIMGMEEGILPHQQSIED-------------DSIEDERRLAYVAITRARENLTITMT 616 Query: 733 GRSIQDNSER--FPSVLVQEL 751 + ++ PS + EL Sbjct: 617 KHRKKFGEKQVSVPSRFIDEL 637 >UniRef50_B4CU41 UvrD/REP helicase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU41_9BACT Length = 678 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 30/202 (14%) Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDA-----ETEAAMTLIEQQ 615 V L + L+ + L L + V R+M+ D +T E Sbjct: 457 VESLDRFVEMLDRFETKLNTP--LSDHAAVLREMMKETGYLDELKRTCKTPQEALSRETN 514 Query: 616 WQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVV 675 ++ Q + L DE++ R ++E V + TL + + + V Sbjct: 515 LMDLLKSFEDYQGRSSEGLRGFLDEMSLRQEREEDDDDARGTGVTLITLHAAKGLEYPHV 574 Query: 676 CLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR----DDDRYLFLEALISAQQKLYISY 731 L+G+ +G+ P DRS+ D++R L + A++ L +S+ Sbjct: 575 YLIGLEEGLLPH-----------------DRSKLEGTVDEERRLLYVGITRARRTLALSW 617 Query: 732 IGRSIQDNSERF--PSVLVQEL 751 I+ S PS ++EL Sbjct: 618 CRHRIRYGSPMPCTPSSFIKEL 639 >UniRef50_D2RKU2 ATP-dependent nuclease subunit B-like protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKU2_ACIFE Length = 1003 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 84/584 (14%), Positives = 164/584 (28%), Gaps = 138/584 (23%) Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 + P +I+V+V + Y +++ F LP Sbjct: 302 DGVQPEEILVLVRKLQDYQGLVRS-FAQYGIPCRLP------------------------ 336 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRY-LRQWVNESGIRWGIDDDNVRELELPAT 519 +P D+ + L L + + +G +W + Sbjct: 337 ---------------LPA-----DLKSQPLPDFLTKLLAAAGEKWDL------------- 363 Query: 520 GQHTWRFGLTR---MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 + L R M L + + ++ Y S+G V + Sbjct: 364 ---SLWQALFRCPLMELLFQTDRENLDFLYTQAYFSSAGAFLAHVRRKELVSAGFWDLVD 420 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETE----------------AAMTLIEQQWQAII 620 L Q+ E W + L+ + L + + + +++ Sbjct: 421 FLQQDHTPEAWRDGLTEWLDRWQLARTWGQLHKEGKVDLDQVKLLAGTEDFVRKTLDSLV 480 Query: 621 AEGLGAQYGD-AVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFK------ 673 A+ L +R L Q + T R IP + Sbjct: 481 KTWEQCGEEKSALGLDKIRTFWKDSLAQASLPL----------TPGEPRGIPVREAGEIQ 530 Query: 674 -----VVCLLGMNDGVYPR---------QLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEA 719 V +LG+ +G++P + + + R+ D DRY F A Sbjct: 531 GAAFPYVYILGVREGMFPAVKRESWLYSDQERAELNALGLELSLTARA-LDTDRYFFGSA 589 Query: 720 LISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE--SEARVK 777 A ++L++S+ + E S + L + + D S A + Sbjct: 590 AALASRELHLSW-----YSDEEGGASPYITGLDHFYAPDSLPVTVYEADPDRCASPALLT 644 Query: 778 AHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPL--E 835 L P + + ++ A + + S + +P + + + L Sbjct: 645 NCLAEQEWLGPREKETLLAAVGTDFSDRTQSARRRWEEPDSPWNGTVPGVVKKPLHLSAS 704 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL---LNALVEQD 892 +L F P A ++ E P P ++ L + L L +E Sbjct: 705 SLDAFLQCPFAALVSRVWKLVPWEEQEPWPA--PDVVGNLLHQTLAAFLGNHLQTGLEAK 762 Query: 893 DAERLFR-----------RFRAAGDLPYGAFGEIFWETQCQEMQ 925 D E L + RF G +P + E +E++ Sbjct: 763 DREILEQELEQVYQGIFDRFHQEGKIPDSPLLDHIRERYGKELR 806 >UniRef50_A4XBE9 ATP-dependent DNA helicase PcrA n=18 Tax=Actinomycetales RepID=A4XBE9_SALTO Length = 795 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 68/364 (18%), Positives = 117/364 (32%), Gaps = 61/364 (16%) Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQA-VFGSAPADRYLPYAISD-RRARQSHPVL 451 + L +D P D+ V Y Q+ VF LPY + R + V Sbjct: 369 IDRLVDDGDTRPGDVAV------FYRTNAQSRVFEEVFIRVGLPYKVVGGVRFYERKEVR 422 Query: 452 EAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV 511 +A L +L + + +L+ P R I + + + I +G Sbjct: 423 DALAYLRALVNEDDTVS-LRRVLNTP----RRGIGDRAEACVEALASRDRISFG--AALR 475 Query: 512 RELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES-SGLIAELVGHLASLLMQ 570 R + P G + +A G + V D + L+ Sbjct: 476 RARDAP----------------GISTRAANGIAEFVALLDGVREVAETSAPEEVLEALLN 519 Query: 571 LNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD 630 + + L + ++ + + + +++ + EGLG + Sbjct: 520 RSGYLTELEESLDPQD-------------AGRVDNLQELVSVAREYTERV-EGLGEEGER 565 Query: 631 AVPLSLLRD-ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 A L L DQ G V + TL + + F VV L GM DGV+P Sbjct: 566 ATVAGFLEQVALVADADQLPADDPEHQGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPHAR 625 Query: 690 APLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERF--PSVL 747 GD +++R L + A+Q+LY+S + PS Sbjct: 626 T------------FGDNHELEEERRLAYVGITRARQRLYLSRAVTRSAWGQPAYNAPSRF 673 Query: 748 VQEL 751 ++EL Sbjct: 674 LEEL 677 >UniRef50_A9BDV1 UvrD/REP helicase n=44 Tax=Cyanobacteria RepID=A9BDV1_PROM4 Length = 809 Score = 56.1 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 57/394 (14%), Positives = 120/394 (30%), Gaps = 75/394 (19%) Query: 394 LAMLEE-DPTLTPRDIIVMVADIDSYSPFIQA-VFGSAPADRYLPYAISDRRARQSHPVL 451 L +LE + L DI ++ Y Q+ V + +PY + + Sbjct: 394 LRLLEAHNKDLKWGDIAIL------YRTNAQSRVIEESLVRWNIPYIVVGGLRFYDRREV 447 Query: 452 EAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV 511 + ++ L L + S +L +L+VP + I + ++ ++ GI Sbjct: 448 KDILAYLRLLINPSDSVSLLRILNVP----KRGIGKTTVQRFSDASSQLGI--------- 494 Query: 512 RELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQL 571 G A+ + L+ L Sbjct: 495 ---------------------------PLWEVVSDPEAIRSLGGRSAKGLLKFKELIDDL 527 Query: 572 NIWRRGLAQERPLE---EWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQY 628 + + ++ E +++ E + + E A Sbjct: 528 RLSLNNTEPSQLIQLVMEKSGYISELIATATDEAEERRRNLQELVNASLQYQEENEAADL 587 Query: 629 GDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688 + LA D++ + + + TL + + F +VCL+G+ G++P Sbjct: 588 EGFLA----TAALASDADKKDTAH----DRITLMTLHSSKGLEFPIVCLVGLEQGLFP-- 637 Query: 689 LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP---S 745 D + +++R L L A+++L++ + R P S Sbjct: 638 ----------SYRSLDDPASLEEERRLCYVGLTRAKERLFLFHATERRIWGGMREPAVSS 687 Query: 746 VLVQEL-IDYIGQSHYLPGDEALNCDESEARVKA 778 + + E+ + I L G AL + R+ Sbjct: 688 IFLSEIPSELIEGDIQLAGGAALRRERRMDRLTR 721 >UniRef50_C7QGW9 ATP-dependent DNA helicase PcrA n=8 Tax=Bacteria RepID=C7QGW9_CATAD Length = 806 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 111/337 (32%), Gaps = 64/337 (18%) Query: 425 VFGSAPADRYLPYAISD-RRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF 483 VF LPY + R + V +A L +L + + V +L+ P + Sbjct: 439 VFEEVFVRVGLPYRVVGGVRFYERKEVRDALAYLRALANEDDIVS-VRRVLNTP----KR 493 Query: 484 DITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE 543 I E+ L + I +G L R Sbjct: 494 GIGEKAEESLERLSARERITFG--------------------DALRR------------- 520 Query: 544 WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRD--MLNAFFLP 601 DE+ GL A V + ++ R A+ P + +L Sbjct: 521 ------ADEAPGLAARSVKAVQGFTQMMDELREMAAEYGPAHVLEAILERTGLLQEL--Q 572 Query: 602 DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF-LAGPVN 660 D++ T IE + + Q L + +A D ++I G V Sbjct: 573 DSDDPQDETRIENLRELLAVALEFEQGQPEGRLPEFLERVALVADSDQIPDGEDHEGMVT 632 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 + TL + + F VV L GM DGV+P + GD+ +++R L + Sbjct: 633 LMTLHSAKGLEFPVVFLTGMEDGVFPHMRS------------MGDKKEMEEERRLAYVGI 680 Query: 721 ISAQQKLYISYIGRSIQDNSER--FPSVLVQELIDYI 755 A+++LY+S + + PS + E+ + + Sbjct: 681 TRAREQLYVSRSVYRSAWGAPQYNPPSKFLGEIPEPL 717 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P07648 Exodeoxyribonuclease V gamma chain n=185 Tax=cel... 1251 0.0 UniRef50_C4K849 Exonuclease V, gamma chain with recB and recD: 5... 1093 0.0 UniRef50_A6FE97 Putative exodeoxyribonuclease V n=1 Tax=Moritell... 1082 0.0 UniRef50_D0ICS0 Exodeoxyribonuclease V gamma chain n=1 Tax=Grimo... 1082 0.0 UniRef50_A1SUW0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ps... 1054 0.0 UniRef50_Q2BKD9 Exodeoxyribonuclease V, 125 kDa subunit n=2 Tax=... 1047 0.0 UniRef50_C9PLM5 Exodeoxyribonuclease V gamma chain n=5 Tax=Gamma... 1039 0.0 UniRef50_B6EGE9 Exodeoxyribonuclease V gamma chain n=1 Tax=Aliiv... 1039 0.0 UniRef50_A5GC93 DNA helicase/exodeoxyribonuclease V, gamma subun... 1018 0.0 UniRef50_A4SSU8 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ae... 1011 0.0 UniRef50_C4L7B2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=To... 995 0.0 UniRef50_A1AQY6 DNA helicase/exodeoxyribonuclease V, gamma subun... 974 0.0 UniRef50_Q2LTC9 Exodeoxyribonuclease V gamma chain n=2 Tax=Bacte... 972 0.0 UniRef50_B8CMV5 Exodeoxyribonuclease V, RecC subunit n=1 Tax=She... 967 0.0 UniRef50_A6W0B0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ma... 966 0.0 UniRef50_Q1LST9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ba... 962 0.0 UniRef50_A3QEU7 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Sh... 961 0.0 UniRef50_Q3IJ13 Exonuclease V, gamma chain with recB and recD: 5... 957 0.0 UniRef50_B8E565 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Sh... 957 0.0 UniRef50_Q080D9 Exodeoxyribonuclease V, gamma subunit n=6 Tax=Sh... 954 0.0 UniRef50_Q3ASJ4 DNA helicase/exodeoxyribonuclease V, gamma subun... 950 0.0 UniRef50_A8ZX08 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 949 0.0 UniRef50_Q65UM5 RecC protein n=9 Tax=Gammaproteobacteria RepID=Q... 946 0.0 UniRef50_A1S6U9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Sh... 944 0.0 UniRef50_Q15V11 DNA helicase/exodeoxyribonuclease V, gamma subun... 941 0.0 UniRef50_Q9CM76 RecC n=1 Tax=Pasteurella multocida RepID=Q9CM76_... 939 0.0 UniRef50_Q3B473 DNA helicase/exodeoxyribonuclease V, gamma subun... 937 0.0 UniRef50_Q12LP5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ba... 921 0.0 UniRef50_C0N788 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Me... 910 0.0 UniRef50_Q7NQR0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ch... 907 0.0 UniRef50_A4JS85 DNA helicase/exodeoxyribonuclease V, gamma subun... 904 0.0 UniRef50_P44945 Exodeoxyribonuclease V gamma chain n=21 Tax=Haem... 899 0.0 UniRef50_A1TWK1 DNA helicase/exodeoxyribonuclease V, gamma subun... 893 0.0 UniRef50_D2BZV3 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ga... 890 0.0 UniRef50_C1DMH2 Exodeoxyribonuclease V, gamma subunit n=18 Tax=G... 885 0.0 UniRef50_C0QI08 RecC n=1 Tax=Desulfobacterium autotrophicum HRM2... 880 0.0 UniRef50_A3JIN1 Exodeoxyribonuclease V gamma chain n=2 Tax=cellu... 880 0.0 UniRef50_Q7VRF1 Exonuclease V, subunit n=2 Tax=Candidatus Blochm... 873 0.0 UniRef50_Q2SQD5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ha... 873 0.0 UniRef50_A6VQ90 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ac... 870 0.0 UniRef50_B8FB93 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 869 0.0 UniRef50_C5S7Q0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Al... 865 0.0 UniRef50_B0BTG3 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Pa... 862 0.0 UniRef50_Q0VNI2 Exodeoxyribonuclease V gamma chain n=3 Tax=Gamma... 861 0.0 UniRef50_A4VRQ6 Exodeoxyribonuclease V gamma chain n=1 Tax=Pseud... 860 0.0 UniRef50_Q1N2R1 Exonuclease V gamma subunit n=1 Tax=Bermanella m... 859 0.0 UniRef50_C1D6T7 RecC n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 858 0.0 UniRef50_B9CWC7 Exodeoxyribonuclease V gamma chain n=2 Tax=Actin... 850 0.0 UniRef50_C5JAU6 DNA helicase/exodeoxyribonuclease V, gamma subun... 848 0.0 UniRef50_D0KY94 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ha... 838 0.0 UniRef50_C6MAC3 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Ne... 837 0.0 UniRef50_Q5QUQ7 Exonuclease V gamma subunit n=2 Tax=Idiomarina R... 836 0.0 UniRef50_C7I4N7 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Th... 835 0.0 UniRef50_C7LVF8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 830 0.0 UniRef50_A1KVC5 Exodeoxyribonuclease V n=23 Tax=Neisseria RepID=... 829 0.0 UniRef50_C8R0F3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 820 0.0 UniRef50_Q1QYD4 DNA helicase/exodeoxyribonuclease V, gamma subun... 817 0.0 UniRef50_C5TL47 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Ne... 816 0.0 UniRef50_D0IXL5 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Co... 800 0.0 UniRef50_C4ZM87 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Th... 799 0.0 UniRef50_Q60AZ6 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Me... 793 0.0 UniRef50_B5JRL4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=ga... 791 0.0 UniRef50_Q480N8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Co... 790 0.0 UniRef50_P57528 Exodeoxyribonuclease V gamma chain n=4 Tax=Buchn... 788 0.0 UniRef50_A1SDB1 DNA helicase/exodeoxyribonuclease V, gamma subun... 779 0.0 UniRef50_C1SHH5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=De... 778 0.0 UniRef50_B1XZ24 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 777 0.0 UniRef50_Q1NSB7 Exodeoxyribonuclease V, RecC subunit n=3 Tax=Pro... 768 0.0 UniRef50_C3X2X1 Exodeoxyribonuclease V n=2 Tax=Oxalobacter formi... 767 0.0 UniRef50_A4B914 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Re... 763 0.0 UniRef50_A1KCB8 DNA helicase, ATP-dependent dsDNA/ssDNA exonucle... 759 0.0 UniRef50_B4RTM0 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Al... 755 0.0 UniRef50_D2PR48 Exodeoxyribonuclease V, gamma subunit n=12 Tax=A... 751 0.0 UniRef50_Q6ANK2 Related to exodeoxyribonuclease V, gamma chain n... 745 0.0 UniRef50_B0TXZ0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Fr... 741 0.0 UniRef50_C8XGX0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Na... 738 0.0 UniRef50_C4GHY2 Putative uncharacterized protein n=1 Tax=Kingell... 736 0.0 UniRef50_C0ZQ87 Exodeoxyribonuclease V gamma chain n=6 Tax=Coryn... 736 0.0 UniRef50_B5JHV1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ve... 732 0.0 UniRef50_D1N1Q2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Vi... 732 0.0 UniRef50_A6DNF3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 731 0.0 UniRef50_Q14GK3 Exodeoxyribonuclease V gamma chain n=16 Tax=Fran... 727 0.0 UniRef50_A1V2S0 Exodeoxyribonuclease V, gamma subunit n=90 Tax=c... 721 0.0 UniRef50_B5EPU5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Ac... 719 0.0 UniRef50_C1ACJ2 Exodeoxyribonuclease V gamma subunit n=1 Tax=Gem... 718 0.0 UniRef50_P96921 Exodeoxyribonuclease V gamma chain n=23 Tax=Myco... 710 0.0 UniRef50_Q8D2T9 RecC protein n=1 Tax=Wigglesworthia glossinidia ... 709 0.0 UniRef50_C7PDT3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ch... 706 0.0 UniRef50_Q89AB4 Exodeoxyribonuclease V gamma chain n=1 Tax=Buchn... 703 0.0 UniRef50_UPI0001C32181 exodeoxyribonuclease V, gamma subunit n=1... 702 0.0 UniRef50_UPI0000E0F593 exodeoxyribonuclease V, gamma subunit n=1... 692 0.0 UniRef50_A9BB00 Possible exodeoxyribonuclease V subunit C 125 kD... 684 0.0 UniRef50_D2U882 Probable exodeoxyribonuclease v, gamma chain pro... 684 0.0 UniRef50_Q3BM39 Exodeoxyribonuclease V, gamma chain n=19 Tax=Xan... 680 0.0 UniRef50_Q7VBK2 Exonuclease V gamma subunit n=1 Tax=Prochlorococ... 672 0.0 UniRef50_C6NU56 Exodeoxyribonuclease V gamma chain n=1 Tax=Acidi... 672 0.0 UniRef50_D0L8X4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Go... 671 0.0 UniRef50_A2C3H2 Possible exodeoxyribonuclease V subunit C 125 kD... 657 0.0 UniRef50_A2C8A0 Possible exodeoxyribonuclease V gamma chain n=4 ... 649 0.0 UniRef50_C6HV34 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Le... 649 0.0 UniRef50_A6W6P1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ki... 641 0.0 UniRef50_A5GLW8 Exodeoxyribonuclease V gamma chain n=4 Tax=Synec... 635 e-180 UniRef50_Q3AJ30 Exodeoxyribonuclease V, gamma subunit n=5 Tax=Sy... 619 e-175 UniRef50_Q05XZ7 Possible exodeoxyribonuclease V gamma chain n=1 ... 615 e-174 UniRef50_A3ETY6 Putative exodeoxyribonuclease V, gamma subunit n... 609 e-172 UniRef50_B2I2P5 Exonuclease V gamma subunit n=14 Tax=Acinetobact... 604 e-171 UniRef50_Q6FF17 Exonuclease V, gamma chain n=3 Tax=Acinetobacter... 594 e-168 UniRef50_D0SSR5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Ac... 586 e-165 UniRef50_A5GU99 Exodeoxyribonuclease V gamma chain n=1 Tax=Synec... 571 e-161 UniRef50_D1R7X4 Putative uncharacterized protein n=1 Tax=Parachl... 549 e-154 UniRef50_Q6MFB7 Putative exodeoxyribonuclease V gamma chain n=1 ... 516 e-144 UniRef50_A2BX92 Possible exodeoxyribonuclease V subunit C 125 kD... 502 e-140 UniRef50_A5EWC3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Di... 487 e-135 UniRef50_D0LXX8 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 439 e-121 UniRef50_Q4FSM9 Possible exoribodeoxynuclease V, gamma subunit n... 429 e-118 UniRef50_C9RQA7 Exodeoxyribonuclease V RecC subunit n=1 Tax=Fibr... 418 e-115 UniRef50_C8NCI0 Exoribodeoxynuclease V, gamma subunit n=1 Tax=Ca... 412 e-113 UniRef50_Q057F6 Exodeoxyribonuclease V, g chain n=1 Tax=Buchnera... 374 e-101 UniRef50_A7BX05 Exodeoxyribonuclease V gamma chain n=1 Tax=Beggi... 369 e-100 UniRef50_Q04UR0 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Le... 356 4e-96 UniRef50_Q6A851 Exodeoxyribonuclease V gamma chain n=3 Tax=Propi... 340 2e-91 UniRef50_C0GDI4 ATP-dependent nuclease subunit B n=1 Tax=Dethiob... 333 2e-89 UniRef50_Q9K2F1 Exodeoxyribonuclease V, gamma subunit, putative ... 316 2e-84 UniRef50_B1I494 ATP-dependent helicase/deoxyribonuclease subunit... 313 2e-83 UniRef50_A4J4E2 ATP-dependent helicase/deoxyribonuclease subunit... 311 9e-83 UniRef50_Q3KL55 Exodeoxyribonuclease V gamma chain n=11 Tax=Chla... 310 2e-82 UniRef50_B7JDU3 ATP-dependent helicase/deoxyribonuclease subunit... 309 4e-82 UniRef50_Q18AP0 ATP-dependent helicase/deoxyribonuclease subunit... 308 1e-81 UniRef50_A6LPC3 ATP-dependent helicase/deoxyribonuclease subunit... 306 2e-81 UniRef50_C6CTT5 ATP-dependent nuclease subunit B n=1 Tax=Paeniba... 306 3e-81 UniRef50_Q8ERW6 ATP-dependent helicase/deoxyribonuclease subunit... 305 7e-81 UniRef50_B9E0C6 ATP-dependent helicase/deoxyribonuclease subunit... 305 9e-81 UniRef50_Q0SWW7 ATP-dependent helicase/deoxyribonuclease subunit... 300 2e-79 UniRef50_B0SIS7 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Le... 298 7e-79 UniRef50_A1HTK8 UvrD-like DNA helicase, C terminal n=1 Tax=Therm... 294 1e-77 UniRef50_B2A611 ATP-dependent helicase/deoxyribonuclease subunit... 293 4e-77 UniRef50_B0KDB8 ATP-dependent helicase/deoxyribonuclease subunit... 291 1e-76 UniRef50_Q24WW7 ATP-dependent helicase/deoxyribonuclease subunit... 291 1e-76 UniRef50_UPI0001850BBB ATP-dependent nuclease, subunit B n=1 Tax... 291 1e-76 UniRef50_B8DF43 ATP-dependent helicase/deoxyribonuclease subunit... 290 2e-76 UniRef50_A7GAI7 ATP-dependent helicase/deoxyribonuclease subunit... 288 7e-76 UniRef50_A0AL19 ATP-dependent helicase/deoxyribonuclease subunit... 286 4e-75 UniRef50_A4IKW6 ATP-dependent helicase/deoxyribonuclease subunit... 285 6e-75 UniRef50_Q2RL78 ATP-dependent helicase/deoxyribonuclease subunit... 285 7e-75 UniRef50_B0TDI1 ATP-dependent helicase/deoxyribonuclease subunit... 284 1e-74 UniRef50_A8VW70 Beta-lactamase n=1 Tax=Bacillus selenitireducens... 284 2e-74 UniRef50_A5ZW43 Putative uncharacterized protein n=1 Tax=Ruminoc... 283 4e-74 UniRef50_C0FS44 Putative uncharacterized protein n=2 Tax=Rosebur... 282 5e-74 UniRef50_UPI0001692BDC ATP-dependent nuclease, subunit B n=1 Tax... 281 8e-74 UniRef50_Q67MD4 ATP-dependent helicase/deoxyribonuclease subunit... 281 1e-73 UniRef50_C0Z546 ATP-dependent nuclease subunit B n=1 Tax=Breviba... 279 4e-73 UniRef50_C0EV12 Putative uncharacterized protein n=1 Tax=Eubacte... 279 5e-73 UniRef50_B8I2Y3 ATP-dependent helicase/deoxyribonuclease subunit... 279 5e-73 UniRef50_B6FV68 Putative uncharacterized protein n=1 Tax=Clostri... 278 9e-73 UniRef50_C5RQN7 ATP-dependent nuclease subunit B n=1 Tax=Clostri... 277 1e-72 UniRef50_A6TVN9 ATP-dependent helicase/deoxyribonuclease subunit... 277 2e-72 UniRef50_D2LU04 ATP-dependent nuclease subunit B n=1 Tax=Bacillu... 275 1e-71 UniRef50_UPI00017899D8 ATP-dependent nuclease subunit B n=1 Tax=... 273 2e-71 UniRef50_A8FBR0 ATP-dependent helicase/deoxyribonuclease subunit... 273 4e-71 UniRef50_D1BPP0 ATP-dependent nuclease subunit B-like protein n=... 272 7e-71 UniRef50_B6G1B7 Putative uncharacterized protein n=1 Tax=Clostri... 270 2e-70 UniRef50_C6JEU6 Putative uncharacterized protein n=1 Tax=Ruminoc... 268 1e-69 UniRef50_C1RHS2 Exonuclease V gamma subunit n=1 Tax=Cellulomonas... 264 1e-68 UniRef50_C9KJP7 ATP-dependent nuclease subunit B n=1 Tax=Mitsuok... 263 3e-68 UniRef50_C6IZE2 ATP-dependent nuclease subunit B n=1 Tax=Paeniba... 261 1e-67 UniRef50_B1HN89 ATP-dependent helicase/deoxyribonuclease subunit... 260 2e-67 UniRef50_C7GAA1 ATP-dependent nuclease n=1 Tax=Roseburia intesti... 259 5e-67 UniRef50_B7AS97 Putative uncharacterized protein n=1 Tax=Bactero... 256 3e-66 UniRef50_UPI00016C0037 ATP-dependent nuclease subunit B n=1 Tax=... 256 5e-66 UniRef50_C9LTM7 ATP-dependent nuclease subunit B n=1 Tax=Selenom... 255 6e-66 UniRef50_C6LH76 ATP-dependent nuclease subunit B n=1 Tax=Bryante... 255 8e-66 UniRef50_B0NWV1 Putative uncharacterized protein n=2 Tax=Clostri... 254 1e-65 UniRef50_C4G1J6 Putative uncharacterized protein n=1 Tax=Abiotro... 254 2e-65 UniRef50_C0CPC7 Putative uncharacterized protein n=1 Tax=Blautia... 253 2e-65 UniRef50_B0NKJ8 Putative uncharacterized protein n=8 Tax=Clostri... 251 1e-64 UniRef50_Q03D70 ATP-dependent helicase/deoxyribonuclease subunit... 251 1e-64 UniRef50_UPI00019738F1 ATP-dependent nuclease subunit B n=2 Tax=... 251 2e-64 UniRef50_C4Z990 AddB n=1 Tax=Eubacterium rectale ATCC 33656 RepI... 251 2e-64 UniRef50_B9XFA2 ATP-dependentnuclease subunitB n=1 Tax=bacterium... 250 2e-64 UniRef50_A9KTE7 ATP-dependent helicase/deoxyribonuclease subunit... 250 3e-64 UniRef50_B0PD61 Putative uncharacterized protein n=1 Tax=Anaerot... 248 7e-64 UniRef50_Q0AXV2 DNA helicase/exodeoxyribonuclease V, subunit B n... 248 8e-64 UniRef50_Q03NA6 ATP-dependent helicase/deoxyribonuclease subunit... 244 1e-62 UniRef50_A8SJB4 Putative uncharacterized protein n=1 Tax=Parvimo... 244 1e-62 UniRef50_C9LAG6 ATP-dependent nuclease subunit B n=1 Tax=Blautia... 244 1e-62 UniRef50_C4V2E4 ATP-dependent deoxyribonuclease subunit B n=2 Ta... 243 3e-62 UniRef50_B1YKM7 ATP-dependent helicase/deoxyribonuclease subunit... 243 3e-62 UniRef50_C8PVF1 Putative exoribodeoxynuclease V, gamma subunit n... 241 2e-61 UniRef50_A5ZAT7 Putative uncharacterized protein n=1 Tax=Eubacte... 239 7e-61 UniRef50_C0WLM6 ATP-dependent deoxyribonuclease, subunit B n=3 T... 237 2e-60 UniRef50_Q4L4Y2 ATP-dependent helicase/deoxyribonuclease subunit... 234 1e-59 UniRef50_C4FTG6 Putative uncharacterized protein n=1 Tax=Catonel... 233 3e-59 UniRef50_Q836J9 ATP-dependent helicase/deoxyribonuclease subunit... 233 4e-59 UniRef50_A7VXI0 Putative uncharacterized protein n=1 Tax=Clostri... 232 8e-59 UniRef50_C9LQY6 Putative ATP-dependent nuclease subunit B n=1 Ta... 228 8e-58 UniRef50_B7J2J0 Exodeoxyribonuclease V, gamma chain n=26 Tax=Bor... 228 1e-57 UniRef50_C0CXR8 Putative uncharacterized protein n=2 Tax=Clostri... 228 1e-57 UniRef50_B1C9D7 Putative uncharacterized protein n=1 Tax=Anaerof... 226 4e-57 UniRef50_UPI0001C37CA1 ATP-dependent nuclease subunit B n=1 Tax=... 226 5e-57 UniRef50_A8U8N1 Exonuclease RexB n=1 Tax=Carnobacterium sp. AT7 ... 225 7e-57 UniRef50_A6NVW2 Putative uncharacterized protein n=1 Tax=Bactero... 225 8e-57 UniRef50_D0BK92 Exonuclease RexB n=1 Tax=Granulicatella elegans ... 225 9e-57 UniRef50_Q038V6 ATP-dependent helicase/deoxyribonuclease subunit... 225 9e-57 UniRef50_C4Z483 Putative uncharacterized protein n=1 Tax=Eubacte... 223 4e-56 UniRef50_UPI0001699EF8 Exodeoxyribonuclease V, RecC subunit n=1 ... 223 4e-56 UniRef50_C8NER5 Exonuclease RexB n=1 Tax=Granulicatella adiacens... 219 5e-55 UniRef50_C9A8J1 Exonuclease RexB n=4 Tax=Enterococcus RepID=C9A8... 214 1e-53 UniRef50_Q1Q1J4 Putative uncharacterized protein n=1 Tax=Candida... 210 2e-52 UniRef50_C4G8W0 Putative uncharacterized protein n=1 Tax=Shuttle... 210 2e-52 UniRef50_C5RAZ7 ATP-dependent deoxyribonuclease, subunit B n=1 T... 208 8e-52 UniRef50_Q04GY8 ATP-dependent helicase/deoxyribonuclease subunit... 207 2e-51 UniRef50_C0EHH2 Putative uncharacterized protein n=1 Tax=Clostri... 206 3e-51 UniRef50_B1MZM3 ATP-dependent helicase/deoxyribonuclease subunit... 204 1e-50 UniRef50_B5E4P4 ATP-dependent helicase/deoxyribonuclease subunit... 204 2e-50 UniRef50_A8YVK1 ATP-dependent helicase/deoxyribonuclease subunit... 200 3e-49 UniRef50_Q9RNX7 RecC1001 (Fragment) n=71 Tax=Bacteria RepID=Q9RN... 197 2e-48 UniRef50_C8PAK3 ATP-dependent exonuclease subunit B n=1 Tax=Lact... 197 2e-48 UniRef50_Q3AA34 ATP-dependent helicase/deoxyribonuclease subunit... 196 4e-48 UniRef50_B9EAN7 ATP-dependent nuclease subunit B n=1 Tax=Macroco... 190 3e-46 UniRef50_B2KE91 ATP-dependent nuclease subunit B-like protein n=... 186 6e-45 UniRef50_C7XXL1 ATP-dependent nuclease subunit B n=1 Tax=Lactoba... 185 9e-45 UniRef50_C2BHK2 Putative uncharacterized protein n=1 Tax=Anaeroc... 184 1e-44 UniRef50_D1PLS4 Putative ATP-dependent nuclease subunit B n=1 Ta... 181 1e-43 UniRef50_A6CDV2 ATP-dependent deoxyribonuclease subunit B n=1 Ta... 174 2e-41 UniRef50_A4W0M6 ATP-dependent helicase/deoxyribonuclease subunit... 171 1e-40 UniRef50_A2RH76 ATP-dependent helicase/deoxyribonuclease subunit... 167 2e-39 UniRef50_C8SXN2 Exodeoxyribonuclease subunit V gamma (Fragment) ... 164 2e-38 UniRef50_A3CVM8 ATP-dependent nuclease subunit B-like protein n=... 162 6e-38 UniRef50_B7GQ32 ATP-dependent nuclease subunit B-like protein n=... 160 2e-37 UniRef50_C5C3C7 ATP-dependent nuclease subunit B-like protein n=... 154 3e-35 UniRef50_Q02D21 ATP-dependent nuclease subunit B-like protein n=... 150 2e-34 UniRef50_C0WBY1 Predicted protein n=1 Tax=Acidaminococcus sp. D2... 150 3e-34 UniRef50_D1CD72 UvrD/REP helicase n=1 Tax=Thermobaculum terrenum... 144 3e-32 UniRef50_Q2FUG2 ATP-dependent nuclease subunit B-like n=1 Tax=Me... 143 3e-32 Sequences not found previously or not previously below threshold: UniRef50_A8STZ1 Putative uncharacterized protein n=1 Tax=Coproco... 226 3e-57 UniRef50_A8RRN9 Putative uncharacterized protein n=1 Tax=Clostri... 218 8e-55 UniRef50_UPI0001BC38B0 ATP-dependent nuclease subunit B n=1 Tax=... 217 1e-54 UniRef50_C2EDG9 ATP-dependent deoxyribonuclease, subunit B n=1 T... 214 2e-53 UniRef50_A7VJ44 Putative uncharacterized protein n=1 Tax=Clostri... 213 4e-53 UniRef50_Q38X70 ATP-dependent helicase/deoxyribonuclease subunit... 207 2e-51 UniRef50_Q1WRR9 ATP-dependent helicase/deoxyribonuclease subunit... 199 4e-49 UniRef50_B2GEY3 ATP-dependent helicase/deoxyribonuclease subunit... 191 2e-46 UniRef50_Q88U40 ATP-dependent helicase/deoxyribonuclease subunit... 187 1e-45 UniRef50_Q5M2T6 ATP-dependent helicase/deoxyribonuclease subunit... 182 7e-44 UniRef50_A5VHK1 ATP-dependent helicase/deoxyribonuclease subunit... 174 2e-41 UniRef50_C7RGF8 ATP-dependent nuclease subunit B-like protein n=... 169 7e-40 UniRef50_Q1GAB0 ATP-dependent helicase/deoxyribonuclease subunit... 163 4e-38 UniRef50_C2KVH9 ATP-dependent deoxyribonuclease subunit B n=1 Ta... 158 1e-36 UniRef50_B6WA23 Putative uncharacterized protein n=1 Tax=Anaeroc... 153 4e-35 UniRef50_C5CHH9 ATP-dependent nuclease subunit B-like protein n=... 150 4e-34 >UniRef50_P07648 Exodeoxyribonuclease V gamma chain n=185 Tax=cellular organisms RepID=EX5C_ECOLI Length = 1122 Score = 1251 bits (3236), Expect = 0.0, Method: Composition-based stats. Identities = 1122/1122 (100%), Positives = 1122/1122 (100%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI Sbjct: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD Sbjct: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG Sbjct: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF Sbjct: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL Sbjct: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR Sbjct: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP Sbjct: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA Sbjct: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA Sbjct: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL Sbjct: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN Sbjct: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL Sbjct: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL Sbjct: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 Query: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF Sbjct: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR Sbjct: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ 960 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ Sbjct: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ 960 Query: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL Sbjct: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 Query: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM Sbjct: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 Query: 1081 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS Sbjct: 1081 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 >UniRef50_C4K849 Exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K849_HAMD5 Length = 1123 Score = 1093 bits (2827), Expect = 0.0, Method: Composition-based stats. Identities = 613/1130 (54%), Positives = 795/1130 (70%), Gaps = 29/1130 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M YHSN+LD+L+ L ++E+E L +PF+ E+ILVQS GMAQWLQ+ L+Q GI+ANI Sbjct: 1 MFITYHSNQLDLLKTLTSTLIEKEPLKNPFQKEIILVQSPGMAQWLQIQLAQSLGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPA+FIWDMF +VL IPKES FNK +M+WKLM LLP LL+ F ++HYL DD D Sbjct: 61 QFPLPATFIWDMFTKVLKNIPKESPFNKDAMTWKLMCLLPDLLQNPIFASIKHYLQDDED 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K+K+ QL+ + ADLFDQYLVYR +WL WE G + L + Q WQA LW +L+ Y+ QL Sbjct: 121 KQKIHQLAIRIADLFDQYLVYRSEWLDGWENGKKFDDLNKNQDWQAALWVSLIRYSRQLE 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 QP WHRA LYQRFI+ L LP RVFI GIS LPP+YL+ L+AL +H++IH +F Sbjct: 181 QPEWHRARLYQRFIQALNKNDVDSDLLPKRVFIFGISTLPPIYLKGLEALSRHMDIHFMF 240 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPCRY+WGDI++ LAKL + + E + NPLL Sbjct: 241 NNPCRYFWGDIQNYDILAKLNIKNTSSDLRNIEE-------------------EQINPLL 281 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 ASWG+LGRD++YLLS +E QE+ AFVD+ PDNLLH +Q D+LE +N+A + E S Sbjct: 282 ASWGRLGRDHLYLLSQIEGLQEIHAFVDIEPDNLLHALQHDMLEFKNQATRHFS-ESNSH 340 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + KR LD D SI H CHS QREVE+L D+LL + EDP LTPRD+IVMVADID+Y+P Sbjct: 341 HNKKRLLDINDRSIGVHSCHSQQREVEILQDQLLNLFSEDPALTPRDVIVMVADIDNYAP 400 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +IQAVF +A +RYLP+AISDR+ Q HPVL+ FI LL LP SRF SE VL LL++ L+ Sbjct: 401 YIQAVFSNASLERYLPFAISDRKMTQVHPVLQTFIKLLDLPQSRFSSEQVLGLLEISALS 460 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 +F+I E+ L LR+WV SGIRWG+D++NV++L LP TGQHTW+FGL RM LGYAM+S Sbjct: 461 QKFEIQEKELSLLREWVEGSGIRWGLDNENVQDLSLPITGQHTWQFGLKRMFLGYAMDSQ 520 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 G+W+ VLPYDES+GL AEL+G LA LLM L+IWR+ L R L EWLP+CRD+ AFF Sbjct: 521 AGDWEGVLPYDESTGLAAELIGKLARLLMMLSIWRKKLKTSRLLSEWLPLCRDLFYAFFE 580 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 +AETE+ LI+QQWQ II GL AQY + VP+SL+R +L R + +RISQRFLAGP+N Sbjct: 581 SNAETESIFILIDQQWQNIIQYGLSAQYANTVPVSLIRHDLVTRFENQRISQRFLAGPIN 640 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 CTLMPMRSIPFKVVCLLGMN+G+YPR L PLGFDLM++K ++GDRSRRDDDRYLFLEAL Sbjct: 641 FCTLMPMRSIPFKVVCLLGMNEGIYPRILPPLGFDLMAKKRQKGDRSRRDDDRYLFLEAL 700 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 +SAQQ LYISYIGRSIQDNS+R+PSVLV EL++YIG S+ LPGDE N DES ARV HL Sbjct: 701 LSAQQYLYISYIGRSIQDNSQRYPSVLVSELLEYIGNSYVLPGDENRNSDESMARVIQHL 760 Query: 781 TCLHTRMPFDPQNYQPG-ERQSYAREWLPAA----SQAGKAHSEFVQPLPFTLPETVPLE 835 HTRMPF +N+ G E+QSYA EWL AA + + +F++PL + L+ Sbjct: 761 LFCHTRMPFSAKNFIKGTEQQSYAIEWLEAAKKHTQEQKQPQDDFIKPLVSEPFSEITLD 820 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 L F+ HP++AFFQ+RL V FR E E+ + EPFIL L+RYQ N +LLNAL+EQ + + Sbjct: 821 ELINFYRHPIKAFFQLRLGVQFRVEQKELSNEEPFILAPLARYQFNTELLNALIEQKNVD 880 Query: 896 RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ--SMEIDLACNGVQIT 953 +L+ R +A+G LP+G FGEI+W+ Q EM +A ++ + +E++ ++ Sbjct: 881 QLYARMQASGRLPFGHFGEIYWQQQKNEMGLIAKKIQTETGHTEFCRLEVNTTLGERTLS 940 Query: 954 GWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAA 1013 GW+ Q DGL+RWRPS L++ G+ LW+EHL YC SGG GESR++ +K+ WRF L+ Sbjct: 941 GWIAHAQTDGLIRWRPSTLTIVDGLLLWIEHLAYCLSGGKGESRIYGKKESVWRFSALSQ 1000 Query: 1014 EQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQ 1073 +A +LS IEGY++GM PLL+L SG AWL CYD +N +L D+ T KA+ L Sbjct: 1001 SEAEQHLSLFIEGYQKGMIQPLLLLNHSGWAWLTKCYDLKNRHILWDEKTQAKAKDHLLT 1060 Query: 1074 AYEGNMMV--RGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 ++GN RGEGDD + QRL+R + ++ I+++++ +LLP+ N Sbjct: 1061 VFQGNPKTGVRGEGDDPYIQRLFRSINDTHVDRILQEAKNYLLPIAHHNI 1110 >UniRef50_A6FE97 Putative exodeoxyribonuclease V n=1 Tax=Moritella sp. PE36 RepID=A6FE97_9GAMM Length = 1130 Score = 1082 bits (2797), Expect = 0.0, Method: Composition-based stats. Identities = 496/1138 (43%), Positives = 681/1138 (59%), Gaps = 28/1138 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +YHSN+LD+L+ LM + ++ L DPF E +LVQS GMAQW++M L++ GI+ANI Sbjct: 1 MFNLYHSNQLDILKELMAHFIAKDPLADPFVEEQVLVQSPGMAQWVKMELAKSMGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPASFIW MF +VLP+IP +SAFNK++MSWKLM +LP+LL +F L+HYL DD D Sbjct: 61 TFPLPASFIWKMFQKVLPDIPDKSAFNKEAMSWKLMLILPELLVLAEFESLKHYLADDQD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 +LFQL K +D FDQYLVYRP+W+A WE G + + WQ LW+ LV T LG Sbjct: 121 DYRLFQLCQKISDTFDQYLVYRPEWIAGWEGGDNM--HADTHPWQPLLWRELVAKTEVLG 178 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q +HRANLY +FI L S+T LP R+F+ G+SALPP YL ALQAL H EIH + Sbjct: 179 QSHYHRANLYDQFIARLNSSTFDAKLLPDRIFVFGVSALPPRYLDALQALAMHTEIHFML 238 Query: 241 TNPCRYYWGDIKDPAYLAKLLT--RQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 +NPCR YWGD+ DP +L K T + + D + LF+ D VGNP Sbjct: 239 SNPCRLYWGDLIDPKWLLKQRTMVNHHNVTLGMSDKVSANDEQTVRALFDEDDAFKVGNP 298 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 LLAS GKLGRD + LL+ QELD FV+ T D LL +IQ DIL+L +R++A N+ + Sbjct: 299 LLASMGKLGRDNLALLTGFG-CQELDVFVEPTDDGLLASIQRDILDLADRSMAEFNVSQQ 357 Query: 359 ----SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 S K P++P DSS+ H CHSP RE+EVLH+ LL M E+P L PRD+++M+ D Sbjct: 358 DTNTRDSRYKLPINPADSSLELHSCHSPMREIEVLHNNLLTMFSENPDLNPRDVVIMMPD 417 Query: 415 IDSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 ++ YSP+IQAVFG+ +RY+P++ISD A+ +P+L +F+ LL+LP SR ++L+ Sbjct: 418 VNGYSPYIQAVFGAMDRYDERYIPFSISDSGAQYDNPILLSFLQLLTLPLSRCNVSELLS 477 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 LL+VP + ARF IT + LRQW++ESGIRWG+D+D+ +LP Q+TW FGL RML Sbjct: 478 LLEVPAVLARFAITPDEFNRLRQWIDESGIRWGLDEDDATRFDLPGMKQNTWLFGLHRML 537 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LGYA +Q +LPY E G+ AEL+G LA + L L + + +W+ + Sbjct: 538 LGYAYGG-DDIYQGILPYQEVQGIEAELLGKLAHFIEALLDSLTSLQDPKSIADWIKLGN 596 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 +++ F+ D + E ++ +I + + + A Y + +LR L L Q SQ Sbjct: 597 TLIDNFYKIDVDDEQSIKMIRDAFSHLDEQLKSASYDKHITPLVLRHYLNNALSQVGASQ 656 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 +FLAG VN CTLMPMRSIPFKV+CLLGMNDGVYPR + P+GFDLM+ K+GDRSRRDDD Sbjct: 657 KFLAGQVNFCTLMPMRSIPFKVICLLGMNDGVYPRSIPPMGFDLMANDLKQGDRSRRDDD 716 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEALISAQ KLYISYIG SI+D SER PSVL+ EL+ Y QS + GDE L+ DES Sbjct: 717 RYLFLEALISAQSKLYISYIGSSIRDKSERLPSVLITELLQYCQQSFCITGDEGLSPDES 776 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP--- 829 A++ HL H PFD + + P S+A+EWLPA + + +PLP + Sbjct: 777 AAQLLTHLIQHHALQPFDARYFNPQAPTSFAKEWLPALAPVVELRQFLTEPLPALISNDD 836 Query: 830 -ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 + V L L RF+ HP + FF RL+V F ++ D EPF ++ L +Y + QLL Sbjct: 837 MQEVELAELLRFYRHPTKYFFNRRLKVYFNQASLDVLDDEPFDVDNLEKYHLKAQLLETE 896 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG-QSMEIDLAC 947 + D + R A+G LP G FG+I + + + QLA ++ +E+D+ Sbjct: 897 LMGGDISLVTERLVASGSLPLGRFGKISLDKEVSTVSQLAQVLMPLLTNSNDDIEVDIPL 956 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL----RKD 1003 ++ GWL + GL+R +PS + +Q+WLEHL +C S N + + K Sbjct: 957 VSGRLFGWLKHIYNGGLVRHKPSGFNGKDYLQVWLEHLCFCISIKNPAATTLVHLTAGKP 1016 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 R + +A L QL E Y +G PL + P++G W KT Sbjct: 1017 VVQRLRVIDQSRARELLFQLFEVYNDGCCQPLALFPKTGWGWAKTKCT-------TAALD 1069 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 K R + + +EG GE D + QR + +L E + + S+ L P+F + + Sbjct: 1070 DYKLRAEAVLNFEGGYNRMGENADDYLQRSFPRLNDEVYKLMSASSESVLFPIFEYLE 1127 >UniRef50_D0ICS0 Exodeoxyribonuclease V gamma chain n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0ICS0_VIBHO Length = 1131 Score = 1082 bits (2797), Expect = 0.0, Method: Composition-based stats. Identities = 517/1134 (45%), Positives = 710/1134 (62%), Gaps = 25/1134 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN+LD+L++L+ I++ + LD+PF+ E+ILVQS GMAQWL++ ++++ GIAAN+ Sbjct: 1 MFTVYHSNQLDLLKSLLVAIIQSKPLDNPFQKELILVQSPGMAQWLKLEMAKEQGIAANV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +FPLPA+FIW MF ++L ++P+ S FNK++M+WKLMT+LP+ L+ DF LR YL D D Sbjct: 61 EFPLPATFIWQMFTQILDDVPQRSFFNKEAMTWKLMTVLPEKLDEPDFDELRRYLDGDDD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 ++KL+QL+ K AD++DQYLVYRP+W+ WE V+ L E + WQA LW+AL +YT QLG Sbjct: 121 QQKLYQLAGKIADIYDQYLVYRPEWIKAWENEQPVDELAEEKRWQAVLWQALYDYTLQLG 180 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLP--SRVFICGISALPPVYLQALQALGKHIEIHL 238 Q +HRANLY+ FI+ L S P GL RVF+ GISALPP YL AL+ALG+HI++H Sbjct: 181 QSPFHRANLYEEFIDVLSSHKEKPEGLQGIDRVFVFGISALPPRYLDALKALGEHIDVHY 240 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 +FTNPCRYYWGDI+D YLAK R ++ A L D +VGN Sbjct: 241 MFTNPCRYYWGDIRDKRYLAKRAA--SMAPRISRASDTEEPAQFALPLMGEDDTAEVGNS 298 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 LLAS GKLGRD + L+S+L+ + FV+V D+LLH+IQ+DIL+L NI+E Sbjct: 299 LLASMGKLGRDNLLLISELQCHEVDQGFVEVPRDSLLHHIQADILDLVEP----ENIQET 354 Query: 359 SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 S++K P+ D S+ VCHSP REVEVLHDRLL MLE DPTL+PRDIIVMVADI++Y Sbjct: 355 LTSESKLPVSADDRSLMVEVCHSPMREVEVLHDRLLDMLESDPTLSPRDIIVMVADINAY 414 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 SP IQAVFG+AP +R++P++ISDR A Q P+L F+ LLSLPDSR + ++L +L++P Sbjct: 415 SPAIQAVFGNAPGERFIPFSISDRTADQESPILTTFLRLLSLPDSRCSAAELLEILELPA 474 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 + +F ++ WV E+GIRWG+DD+ LP Q+TW FGL RMLLGYAM Sbjct: 475 VMRKFGFDNRQFEKVKLWVEEAGIRWGLDDNTASHFSLPHQHQNTWLFGLNRMLLGYAMP 534 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 S+ G + VL YDE GL AEL G L + + + L + E W+ + + Sbjct: 535 SSAGLYNDVLAYDEVQGLEAELAGKLGAFFRVMTATQTALLDTKNGEGWIQTLTSLFDDM 594 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 F D + E A LI Q + + A + + L ++RD L ++L ER+SQRFLAG Sbjct: 595 FALDTDEELAGQLIRTQLDNWLTQLDDAGFTQTLALPIVRDYLKEKLGGERVSQRFLAGQ 654 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 VN CTLMPMRSIPF+VVCLLGMNDG YPR +AP+GFDLM+ + + GDRSRRDDDRYLFLE Sbjct: 655 VNFCTLMPMRSIPFQVVCLLGMNDGDYPRTIAPVGFDLMAGRTRAGDRSRRDDDRYLFLE 714 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 AL SAQQ+LYISY+GRS+QDNSE+ PSVLV EL+DY Q + L GD++L ES R+ Sbjct: 715 ALQSAQQRLYISYVGRSVQDNSEKVPSVLVTELLDYCRQGYCLAGDQSLPEHESGQRLLG 774 Query: 779 HLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF-----VQPLPFTLPETVP 833 L + +PF Q + R SYA EWLPAA G A + F + P P + Sbjct: 775 TLVHHNPLVPFSKQAFSQNRR-SYAAEWLPAARGEGHAAAPFLDGRALNPAPDLDIGVIE 833 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 L LQRFW PV+ FF RL+V F + + + + EPF L+ L RYQ+ LL+ ++ + D Sbjct: 834 LAELQRFWRLPVQYFFNRRLKVFFESPEGAMEEAEPFALDNLRRYQLRDALLSHVMAKGD 893 Query: 894 ----AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ-PGQSMEIDLAC- 947 + F++ +A+G LP FGE+ E++ + R+ Q++EI+L Sbjct: 894 SEASLDAFFKQQKASGALPLSHFGELALESEQAGILAQYQRLKPMIADKRQALEINLTLV 953 Query: 948 ---NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG 1004 V++ GWL + G + +R + + W++HL CA+G ++ F+ D Sbjct: 954 TSRGTVKLQGWLDERYRAGRILYRSGKVRAQDRLSAWIDHLCQCAAGEALDT-CFIGVDE 1012 Query: 1005 EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 + + ++AE A+ L +E Y G APL LP + A L C D +DD T+ Sbjct: 1013 DVVWSAVSAESAITALVDYVEYYLAGTEAPLAFLPNTAMAGLSACIDKD-GHWSEDDVTM 1071 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 KAR+K A+EG MV GEG++ + R+W Q ++ + E + LLP Sbjct: 1072 DKARSKMRAAFEGGYMVSGEGENTYIARVWPQADDALLDTVFELGKAVLLPALD 1125 >UniRef50_A1SUW0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Psychromonas RepID=A1SUW0_PSYIN Length = 1149 Score = 1054 bits (2725), Expect = 0.0, Method: Composition-based stats. Identities = 465/1148 (40%), Positives = 664/1148 (57%), Gaps = 43/1148 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M RVYHSN+L +L+ L+ +++ +L DPF E ILVQS GMAQWLQ+ ++Q GI+ANI Sbjct: 1 MFRVYHSNQLALLKDLLVALMQGAKLTDPFASETILVQSPGMAQWLQLEIAQSTGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASFIW F VL ++P +S FNK SM+W++M LLP LE DF+ L HYL DD Sbjct: 61 DFPLPASFIWQQFKHVLKDVPDKSPFNKMSMTWQIMRLLPDCLEDPDFSALLHYLEDDLY 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETG-------------HLVEGLGEAQAWQAP 167 RK FQLS K AD+FDQYLVYRP+W+A WE + E Q WQA Sbjct: 121 LRKRFQLSQKIADIFDQYLVYRPEWIAAWENASEQEISQWHAENTESIPAWLEDQRWQAK 180 Query: 168 LWKAL---VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYL 224 LWK L + + + +HRA LY+ F++TL + T LP R+F+ GISALP YL Sbjct: 181 LWKKLTLTIAESFKAQGKAYHRAGLYKDFLDTLATKKT-LEHLPKRIFVFGISALPESYL 239 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDREL-------PLF 277 QAL L +H ++H L TNPCRYYW DI DP LAK + R+ Sbjct: 240 QALLGLAEHCDVHFLLTNPCRYYWADIVDPKLLAKRFAQSRQKLTVSGGEIKNLPDSSWQ 299 Query: 278 RDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHN 337 +D+ + ++D + +VGNPLLAS GK+GRD+++ L LE QE+DAFVD+T D+LLH+ Sbjct: 300 KDASHLQWSQSNDPDNEVGNPLLASMGKMGRDFLFQLYSLEQ-QEVDAFVDITRDSLLHH 358 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 IQ+D+L+L++ + + L P +S+T H+CHS REVE+LHD LLAM Sbjct: 359 IQADVLDLQDSSQ-----ALSKDPSARISLAPEGNSLTLHLCHSVMREVEILHDNLLAMF 413 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 D LTP+DIIVMV DID Y+P++QAVF S +RY+P++ISD A+Q +P+L +F+ L Sbjct: 414 AADNNLTPKDIIVMVPDIDQYAPYVQAVFASVEQNRYIPFSISDVSAQQENPILISFLQL 473 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L+L +R+ ED+LALL+VP + RF++ ++ L++W+NESGIRWG+D+ + + +LP Sbjct: 474 LNLNQTRYTREDILALLEVPAILQRFNLNQDEFVLLQKWINESGIRWGLDEKSAAQWDLP 533 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 Q++W FG+ RMLLGYA+ ++ + YDE GL +L+G + L + G Sbjct: 534 RLSQNSWLFGIRRMLLGYAISD--TLFEGISAYDEIQGLQGDLLGRFIDFIDALIKLQEG 591 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 L Q +W +L F+ D + ++LI + ++ A + + L +L Sbjct: 592 LKQSYNANQWQAFVYQLLEDFYQEDDDNTMVLSLIRNEMDNLLDHTGQADFTQPISLFVL 651 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 + L Q L + SQRFLAG VN CTLMPMRSIPFKVVCLLGMNDG YPR + P+GFDLM Sbjct: 652 IEHLEQHLSDQGNSQRFLAGQVNFCTLMPMRSIPFKVVCLLGMNDGQYPRNIVPMGFDLM 711 Query: 698 SQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ 757 + KRGDRSRR++DRYLFLEAL+SAQ+K YISYIGR I DNSE+ PSVLV EL++Y Q Sbjct: 712 AGHRKRGDRSRREEDRYLFLEALLSAQEKFYISYIGRDINDNSEKMPSVLVSELLNYCQQ 771 Query: 758 SHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPA---ASQAG 814 S L ++ +E +KA ++ + F + YQ + +Y W A A AG Sbjct: 772 SFVLKDNQQDQNRVAEKALKAFISFHYPMQSFSERYYQGDVK-TYNPNWWAALKDAKNAG 830 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 + + + L +L E VPLE L++F HP + FF RL V F +D + + EPF Sbjct: 831 EKSHKRLLTLDQSLTE-VPLEQLKQFLKHPCKVFFNQRLDVYFELDDDQQENDEPFSFNH 889 Query: 875 LSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC 934 L +Y + + +E + LF RAAG LP+G F + + + M+ LAD + Sbjct: 890 LQQYVLKHEQFEYALEGKSLDNLFIEKRAAGKLPFGEFAALIFTKDLEPMENLADLTTSY 949 Query: 935 -RQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN 993 +++ ID+ ++ G L GL+R + + + LWLEHL YC + G Sbjct: 950 FIGEIETINIDIQFAEKRLFGELNDHCEKGLVRVKTGNIKGKDILTLWLEHLCYCIASGQ 1009 Query: 994 GESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQ 1053 + L + + F L A+ A + +S+L+ Y G+ PL +S AW + + + Sbjct: 1010 NLNSTLLGQKEGFYFKELPADYAYNRISELLALYEAGLQQPLPFFIQSAFAWCEQVHKLE 1069 Query: 1054 NDAMLDDD---STLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQ 1110 + + DD +T+ +A+ + N EG D + R + L +A + Sbjct: 1070 PNCFVFDDLEFATIAEAQQVASLCF-SNDRGFSEGQDPYINRCYENLED-HWDAFQPLAL 1127 Query: 1111 RFLLPLFR 1118 + +P+ Sbjct: 1128 KIFMPILS 1135 >UniRef50_Q2BKD9 Exodeoxyribonuclease V, 125 kDa subunit n=2 Tax=Neptuniibacter caesariensis RepID=Q2BKD9_9GAMM Length = 1092 Score = 1047 bits (2708), Expect = 0.0, Method: Composition-based stats. Identities = 473/1121 (42%), Positives = 662/1121 (59%), Gaps = 40/1121 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +VYHSN L VL+ L+ ++ R+ + DPF E ILVQS GMAQWL++ L+ K GIAA+I Sbjct: 1 MFQVYHSNSLLVLKDLLTELIRRDPISDPFVAEQILVQSPGMAQWLKLELADKSGIAASI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPASF+W F VLP++P+ SA+NK++MSWKLM +LP +L++ F+ L+ YL DD D Sbjct: 61 DFPLPASFLWKHFSEVLPDVPERSAYNKEAMSWKLMAVLPAMLKQPVFSALQQYLADDDD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + +L+QL +K AD++DQYLVYRPDW+ WE G + WQ LW+ L YT L Sbjct: 121 RFRLYQLCNKIADIYDQYLVYRPDWIEDWEQGGDIAA--ARHPWQPVLWRELKSYTEDLQ 178 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q WHRAN++ F++ L++ + LP R+F+ GISALP Y+ ALQALGK I++HL+ Sbjct: 179 QSHWHRANMFSAFVDGLKNPSAA-EKLPRRLFVFGISALPQNYVHALQALGKRIDVHLMV 237 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPCRYYWGDI D + +A+L R + GNPLL Sbjct: 238 MNPCRYYWGDILDQSQIARLNRRWFSKP------------------DLDFSDYAEGNPLL 279 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS GKLGRDY+Y L D + E+DA+ D +LL IQ DIL+LEN E+ Sbjct: 280 ASMGKLGRDYLYQLQD-NALDEIDAYADPERGSLLSAIQQDILDLENPTRL---PEQIDN 335 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 S K LD D SI H CHS RE+EVLHD+LL M E++P L PRD+IVM+ D+ +Y+P Sbjct: 336 SHGKHRLDREDRSIELHSCHSALREIEVLHDQLLDMFEKNPLLKPRDVIVMMPDVAAYAP 395 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I+AVF +APA+RY+PY+ISDR RQ +P+L +F +L L SRF DVL LL+VP + Sbjct: 396 YIEAVFANAPAERYIPYSISDRSNRQENPLLLSFEKILKLNSSRFTVSDVLELLEVPAVM 455 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 R + E+ + LR WV++ IRWG+D + ELP Q++WRFG+ RML+GYA+ Sbjct: 456 RRVGLDEKSFQKLRFWVDQVNIRWGMDSEQRSIWELPLFEQNSWRFGIKRMLVGYALGEG 515 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 WQ V PY E GL +EL+G LA + L+ R Q+ W+ V +L +F Sbjct: 516 SEYWQGVAPYTEIEGLESELLGKLAGFIDLLDETRLHFTQDHEFSTWIEVINQILENYFT 575 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 D + E ++ I + Q + + A Y A+ S++ L ++Q+R SQRF+ G VN Sbjct: 576 ADEQDEISLNTIRKTLQGLQEQLKDANYSQALSPSVIAHYLIDGINQQRSSQRFMVGSVN 635 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 CTLMPMRSIPF VVCLLGMNDG YPR + P+GFDLM+ P+RGDRSRRDDDRYLF+EAL Sbjct: 636 FCTLMPMRSIPFSVVCLLGMNDGTYPRSIPPVGFDLMTDYPRRGDRSRRDDDRYLFMEAL 695 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 +SAQ+KLYISYIGRSI+DN+E+ PSVLV EL+DY Q + L GDE L+C S +++AH+ Sbjct: 696 LSAQEKLYISYIGRSIRDNNEKIPSVLVSELLDYAEQGYVLEGDEELSCSNSGEKLRAHI 755 Query: 781 TCLHTRMPFDPQNY-QPGERQSYAREWLPAASQAGKAHSEFVQP-LPFTLPETVPLETLQ 838 H + F P+ + G+ S+A EWLPAA +A F+ L + L+ L Sbjct: 756 KTQHPLVAFSPEYFKSAGDYFSFASEWLPAAQAESRAAEVFLTEDLTSEALPELELKQLI 815 Query: 839 RFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF 898 F P R+FF RL+V F + E D EPF L+ LS Y + Q+ L + ++ D ERL Sbjct: 816 SFLRDPCRSFFNNRLKVYFGNSEIEAQDEEPFSLDNLSSYLLKQRYLQSALQDRDLERLD 875 Query: 899 RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-GQSMEIDLACNGVQITGWLP 957 + A G LP GE+ + +LA+++ + Q +EI+L+ V++ GWL Sbjct: 876 KAILAEGRLPLARAGELNLNKLRHDSLELAEKLKPLSEGTPQRIEINLSIGEVKLQGWLD 935 Query: 958 QVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQAL 1017 PD LLR+RP+ ++ + W+EHL CAS + ++ G+ + + AE+A Sbjct: 936 SCYPDHLLRYRPAQVNARDRLSTWVEHLALCASNQACRNTVYRGLSGKVFYKAVPAEKAT 995 Query: 1018 HYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEG 1077 L+ LI Y++G +AP S + + K + + G Sbjct: 996 ELLADLIRFYQQGQTAPQAFDAGSAHKYFEQ-----------QAKDPDKVMSALENQFYG 1044 Query: 1078 NMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + G D+ + +R + P + + ++R PL Sbjct: 1045 SAYSNGLQDNPYLRRAFSDFEPF-VTQFIPLAERIYEPLLS 1084 >UniRef50_C9PLM5 Exodeoxyribonuclease V gamma chain n=5 Tax=Gammaproteobacteria RepID=C9PLM5_VIBFU Length = 1173 Score = 1039 bits (2687), Expect = 0.0, Method: Composition-based stats. Identities = 519/1171 (44%), Positives = 717/1171 (61%), Gaps = 61/1171 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYH+N++D L+ L+ +++ + L +PFE E ILVQS GM+QWL+M L+Q+ G+AAN+ Sbjct: 1 MFTVYHANKVDTLKILLVHLIKNDPLANPFEKEQILVQSPGMSQWLKMALAQELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLPA+FIW+MF +VLP +PK SAFNK++M+WKLM LLP L+++ F LR YL DD+D Sbjct: 61 DFPLPATFIWEMFTQVLPNVPKRSAFNKEAMTWKLMELLPSQLDQDVFAPLRRYLQDDTD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + KL+QL+ K AD+FD YLVYRPDW+A WE G V + WQ LWKAL +YT G Sbjct: 121 QSKLYQLAEKIADIFDGYLVYRPDWIAHWEAGESVAEIDGEHPWQPVLWKALYDYTLAQG 180 Query: 181 QPRWHRANLYQRFIETLESAT-----TCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Q +HRANLYQ FI+ L LP R+FI GIS+LPP Y+ AL+ALG+HI+ Sbjct: 181 QSHYHRANLYQSFIDALAHIDLTHDEALRAALPKRLFIFGISSLPPRYMDALKALGEHID 240 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRH-----------SFEDRELPLFRDSENAG 284 +HL+FTNPC++YWGDI+D YLA++ +++R+ + E+ + + Sbjct: 241 VHLMFTNPCQHYWGDIRDRKYLARVESQRRKQLVLHPNAETHTFTVEGEVSPLKGELDDY 300 Query: 285 QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILE 344 Q VGN LLAS GKLGRD +YLL+ + ++E + F+DV D+LLH +Q+DIL Sbjct: 301 AGDELHTAQAVGNSLLASMGKLGRDNLYLLAQSD-NEEHELFIDVPRDSLLHQLQADILH 359 Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 LE + S +K L D S+T H CHSP REVEVLHD LLAM + DP L Sbjct: 360 LEE----HQDDTLLDSSAHKPALPHGDRSLTLHACHSPMREVEVLHDELLAMFDRDPELK 415 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 PRDIIVMVADI++YSP+IQAVFG+AP +R++PY+ISDR A Q P+L AF+ L++LP SR Sbjct: 416 PRDIIVMVADINAYSPYIQAVFGNAPGERFIPYSISDRTADQESPILNAFMQLVALPQSR 475 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 ++ ++L LL+ P + ARF + ++WV ESGIRWG++D +E ELP T Q+TW Sbjct: 476 CLASELLELLETPAMMARFALDASEFDTAKRWVEESGIRWGLNDATAQEFELPQTHQNTW 535 Query: 525 RFGLTRMLLGYAMESAQGEWQ----SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +FG+ RMLLGYAM S+ G ++ ++ PY+E G+ AEL G LA + ++ +R+ LAQ Sbjct: 536 QFGIARMLLGYAMPSSVGLFEAGGHAMAPYNEVQGMSAELAGKLAHFIDTISDYRQRLAQ 595 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 +P+E W + +L+ F D + E A+ I A+ + A Y DA+ +++ Sbjct: 596 TQPIEAWRELLSSLLDDCFSVDLDGEMALKSIRDTLAALKEQLADAGYADAISPAIMGQY 655 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 L +L R+SQRFLAG VN CTLMPMRSIPF VVCLLGMNDGVYPR + P GFDLM+ + Sbjct: 656 LHDKLSGTRVSQRFLAGQVNFCTLMPMRSIPFNVVCLLGMNDGVYPRSMPPEGFDLMNGR 715 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 + GDRSRRDDDRYLFLEA++SAQ LYISY+GRSIQDN+ER PSVLV EL++Y Q++ Sbjct: 716 TRPGDRSRRDDDRYLFLEAMLSAQHTLYISYVGRSIQDNTERVPSVLVTELLEYCQQNYC 775 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF 820 L GDEAL DES AR+ L H +PF PQ + SYA+EWLPAA + G A F Sbjct: 776 LAGDEALPSDESGARLIEQLQFTHAMVPFSPQAFLTDV-GSYAKEWLPAALRQGTASGTF 834 Query: 821 VQP-----LPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGL 875 + L P + L LQRFW PV+ FF RL+V F + D EPF L GL Sbjct: 835 HRALDDYLLDAIYPLELDLVELQRFWRLPVQYFFNRRLKVVFEPPLPVMEDDEPFALGGL 894 Query: 876 SRYQINQQLLNALVEQDDAE-------RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLA 928 + YQ+ LL+ L+ A+ + ++ RA G LP GAFGE+ +ET + ++L Sbjct: 895 ASYQLRDALLDGLLNAPSAQARDEVLAQFNKQQRAQGKLPVGAFGELEFETNRVQAEELV 954 Query: 929 DRVI-ACRQPGQSMEIDLACN------GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLW 981 ++V C+ P ++++L V ++GWL + GL+R+R + + W Sbjct: 955 EKVQFLCQAPLDDLDVNLTLTALGQSRPVHLSGWLTRRYQSGLVRYRSGAIRSEDMLAAW 1014 Query: 982 LEHLVYCASGGNGESRLFL--RKDGEWR--FPPLAAE------QALHYLSQLIEGYREGM 1031 ++HL ASG N + + RKDG PPL A AL L++L Y +GM Sbjct: 1015 IDHLAAAASGANLITHVIGYDRKDGVVHQVLPPLNANASESAALALAQLNELARLYYQGM 1074 Query: 1032 SAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQ 1091 +APL P++ A ++ + + +K+ K + + M GEG++ + Sbjct: 1075 TAPLAYFPKTALASVEAGF-----SRGQWVDDEEKSLKKMAETFNDGFMTSGEGNNHYIA 1129 Query: 1092 RLWRQLTPETMEAIVEQSQRFL-LPLFRFNQ 1121 RLW Q T E + + L P + Sbjct: 1130 RLWPQWTDELAHQVRVLASLVLQAPRLQLRD 1160 >UniRef50_B6EGE9 Exodeoxyribonuclease V gamma chain n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EGE9_ALISL Length = 1127 Score = 1039 bits (2687), Expect = 0.0, Method: Composition-based stats. Identities = 484/1138 (42%), Positives = 688/1138 (60%), Gaps = 32/1138 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN+LDVL++L+ ++ LD+PFE E ILVQS GM+QWL++ L+++ GIAAN+ Sbjct: 1 MFTVYHSNQLDVLKSLVVELIRLNPLDNPFEQEQILVQSPGMSQWLKIELAKELGIAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLPA+FIWD+F +VL ++PK SAFNK++M+WK++TLLP+LL++++F L+ YL +D Sbjct: 61 TFPLPATFIWDLFTQVLDDVPKRSAFNKEAMTWKIVTLLPELLKQDEFAPLQRYLENDDK 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + K +QL++K AD+FDQYLV+RP+W+ +WE G V L WQ LW+AL + T LG Sbjct: 121 QLKCYQLAAKIADIFDQYLVFRPEWIQKWEAGEEVIELEGEHPWQPILWQALYDQTLALG 180 Query: 181 QPRWHRANLYQRFIETLES---ATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 +HRAN+++ FIETLE+ T P G+P R+F+ GI++LPP YL AL ALG+HI++H Sbjct: 181 HSPYHRANMFEHFIETLENYLQTGTLPKGMPKRLFVVGITSLPPRYLDALAALGQHIDVH 240 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 L+FTNPC++YWGD++D YLAKL + R +L + ++ N Sbjct: 241 LMFTNPCQHYWGDLRDNKYLAKLDRQNRIAKRLSSDLSTLENDDSDLFTN------KSEN 294 Query: 298 PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LLASWGKLGRD LL DLE + E FV ++LLH+IQSDIL LE R+ V Sbjct: 295 SLLASWGKLGRDNFQLLLDLEPN-EYKIFVPTGREDLLHSIQSDILNLEERSRDDV---- 349 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 S++K+P+ P D SI H CHSP REVEVLHD+LL M DP L PRDIIVMVADI+ Sbjct: 350 LDNSEHKQPISPDDRSILLHSCHSPMREVEVLHDQLLDMFANDPELKPRDIIVMVADINV 409 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 YS IQAVFG+A DRY+P+AISD+ A Q +PVL AF++L++LP++R ++L+LL+VP Sbjct: 410 YSAAIQAVFGNAAFDRYIPFAISDQSAEQENPVLLAFMNLMALPENRCGLSELLSLLEVP 469 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + +RF E +++W E+GIRWG+D+ +LP Q++W FG+ RMLLGYAM Sbjct: 470 AVMSRFKFNAEQFEIVKRWAEETGIRWGLDNSTSAHFDLPEHNQNSWLFGIQRMLLGYAM 529 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 E G ++ + Y++ G+ AE+ G+LA + QL ++ L Q + + W + +++ Sbjct: 530 EQDAGLFEGMASYEQVQGMNAEIAGNLAHFIDQLLTYQITLGQAQKINAWRTIINQLMDD 589 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F L + E E + I Q Q + A + + ++ + L L + SQRFLAG Sbjct: 590 FLLVELEGELVVKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLAG 649 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 VN CTLMPMRSIPF V+CLLGM DG YPR + GFDLM ++ K GDRSRRDDDRYLFL Sbjct: 650 KVNFCTLMPMRSIPFDVICLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRYLFL 709 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 EAL SA + Y+SYIGRSI+DN+E+ PSVLV EL++Y QS+ L GD LN +ES + Sbjct: 710 EALQSANKAFYLSYIGRSIRDNTEKAPSVLVSELLEYCQQSYCLDGDSELNPEESAKHLV 769 Query: 778 AHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE--TVPLE 835 LT H +P+ Q++ G+ SYA EWLP A G+A EF PE + L Sbjct: 770 KKLTIEHPLVPYSQQSF-VGDNTSYASEWLPTAKLEGQAAPEFQTEPLVFAPESKELELT 828 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 LQRFW PV FF L+V F T +S + D EPF ++G + Y + +LL L+ DD Sbjct: 829 ELQRFWRLPVAYFFNRGLKVFFETVESRVEDDEPFSIDGRTGYGMKSELLEELLAYDDPN 888 Query: 896 -------RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG-----QSMEI 943 +++ +A G LP G+FGEI + + +++L D + + Sbjct: 889 QVFQLSREFYQQQKAQGKLPIGSFGEIAADKEVNTVKELVDHIQPLTTSPLEDQEVRLRF 948 Query: 944 DLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKD 1003 +++ GWL Q +G+LR+R + + + W++HL CA + LF D Sbjct: 949 TFPHGEMELQGWLKQRYKEGMLRYRGGKIRSHEVLATWIDHLCLCAMKQQQFTHLF-GTD 1007 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 + F P+ E+A +L ++ Y G APL LP++ A L+ D + DDD T Sbjct: 1008 AIYHFEPIETEKAYQHLEVILSLYISGNCAPLPYLPKAALAGLEAHIDKK-GVWNDDDET 1066 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 +KA K Y G GE + + R+W + E + I + ++ L ++ Sbjct: 1067 HEKALKKMADEYSGTRYA-GENSNDYVMRMWPEWNDELGQTIFDNAKNVLHDALLHSE 1123 >UniRef50_A5GC93 DNA helicase/exodeoxyribonuclease V, gamma subunit n=7 Tax=Geobacter RepID=A5GC93_GEOUR Length = 1091 Score = 1018 bits (2632), Expect = 0.0, Method: Composition-based stats. Identities = 388/1134 (34%), Positives = 592/1134 (52%), Gaps = 75/1134 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L++Y SNR++ L + +VE+ L PF PE I+VQS GM +WL M L+++FG+ AN + Sbjct: 3 LKIYTSNRMETLVDQLAGVVEK-PLPSPFTPETIVVQSKGMQRWLAMELARRFGVWANGE 61 Query: 62 FPLPASFIWDMFVRVLPEI---PKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 FP P + + +F V+P++ P+ S+F+ ++W+LM LLP L F L YL DD Sbjct: 62 FPFPNAVVETLFRAVIPDLAETPQVSSFHPDVLTWRLMELLPSCLGGPGFEPLAGYLADD 121 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQ 178 D K QL+ K AD FDQY +YRP+ L WE G WQ LW+ LV Sbjct: 122 GDGLKRLQLAEKIADTFDQYTIYRPELLLSWEEGAEG-------GWQGLLWRELVRNATD 174 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 HRA L F + T LP R+ + GI LPP +++ L + + EI+L Sbjct: 175 -----RHRAALLAEFRRRINRPDTAAAELPRRISLIGIPTLPPFHMEVLSGIARQTEINL 229 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 NPCR YWG I LA+L R G + GNP Sbjct: 230 FLLNPCREYWGKIVSERELARLERR-------------------GLDEDPLHGYFETGNP 270 Query: 299 LLASWGKLGRDYIY-LLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LLAS G++GRD+ L+ D ++ D F ++ LLH IQ++IL+L +R AG Sbjct: 271 LLASMGRIGRDFFDSLIGDCGDAEFSDTFTEIRGSGLLHAIQANILDLRDRGAAG----- 325 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 ++ ++ D ++ H CHS RE+EVL+D++L++ + DPTL+PRDI+VM DI++ Sbjct: 326 -----DREVIEATDDTLRIHSCHSAMREIEVLYDQILSLFDNDPTLSPRDILVMTPDIEA 380 Query: 418 YSPFIQAVFGSAPA-DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y+P+I AVFG+ ++ +PY+I+DR R+ E +++L L SRF +VL +L+ Sbjct: 381 YAPYISAVFGTPEQPEQRIPYSIADRSLRREGETAEVLLAILQLCGSRFAITEVLDILEA 440 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 + RF +T++ L + QW+ + IRWGID +PA +++W+ GL R++LGYA Sbjct: 441 APVCRRFGLTDKDLETVHQWLTATNIRWGIDAMERTGHGVPAFSENSWQAGLDRLILGYA 500 Query: 537 MESAQGEWQS-VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 M + +LPYD G A L+G L + LA+ R +EEW V R +L Sbjct: 501 MAGEDRHFFGEILPYDHLEGSDALLLGRFLEFCETLFSRVQALARPRQIEEWTAVLRSLL 560 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 F D + E + + + + + A +G V + ++R L ++L E+ FL Sbjct: 561 GTFIKADGDDERDVATLLKVIERLDECRAHANFGGDVGIEIVRAWLGEKLGSEQRGFGFL 620 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL 715 G V C ++PMRSIPF+V+ LLGMNDGV+PR+ P GFDL++ P+RGDRS+RD+DRYL Sbjct: 621 TGGVTFCAMLPMRSIPFRVIALLGMNDGVFPRRNRPHGFDLIAASPRRGDRSQRDEDRYL 680 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 FLEAL+SA+++ ISY+G+SI+DNSE PSVLV EL+DYI + G+EA Sbjct: 681 FLEALLSARERFSISYVGQSIKDNSELPPSVLVSELLDYIAKGFTRAGEEADET-----A 735 Query: 776 VKAHLTCLHTRMPFDPQNYQP--GERQSYAREW----LPAASQAGKAHSEFVQPLPFTLP 829 ++ H PF ++P G SY+RE L A + + +PLP Sbjct: 736 AVRGISVRHPLQPFSRDYFRPNDGRLFSYSRENLHGVLAAIAPPAVPATFLSRPLPPAEE 795 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 V L L F+A+P + F + RL + D ++EPF L+ L +Y + Q+++ AL+ Sbjct: 796 TLVTLYDLAEFFANPCKHFLRRRLGIYLEQRDESFAESEPFSLDHLGKYMLGQEIVAALL 855 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR--QPGQSMEIDLAC 947 + + R+ G+LP G G I ++T A++V A P +EIDL Sbjct: 856 AGESLDNHRAVARSRGELPPGECGTITYDTLASAASDFAEQVAAATVGAPLPPLEIDLEF 915 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASG--GNGESRLFLRKDGE 1005 ++ G + ++ P+GL+ +R + L +++W+EH+ ++ G + L D Sbjct: 916 KESRLVGRIERIWPEGLVHYRYAKLKAKDRLRIWIEHICLTSAAPTGYPRTASLLASDVT 975 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 P++ +L L QL+ YR GMSAPL P+S + + D + A Sbjct: 976 VAIAPVS--DSLALLEQLLTIYRRGMSAPLPFFPKSALEYARKANDPKKAA--------- 1024 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 KA + + G+ GE +D +YQR + P + S+ PL Sbjct: 1025 KALGDARKKWHGSEDYPGEKEDPYYQRCFGNEEP-LDGEFMALSRMVYDPLLAH 1077 >UniRef50_A4SSU8 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Aeromonas RepID=A4SSU8_AERS4 Length = 1134 Score = 1011 bits (2613), Expect = 0.0, Method: Composition-based stats. Identities = 486/1164 (41%), Positives = 666/1164 (57%), Gaps = 82/1164 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +YHSN+LD+L+ L+ + + L PFE E +LVQS GMAQWL++ L++ FGIAANI Sbjct: 1 MFTLYHSNQLDLLKELLVNHIRQAPLAHPFEQEQVLVQSPGMAQWLKLELAKAFGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL----- 115 +FPLPASFIW+MF RVL ++P++S +NK +MSW+LMT+LP LL+R F L YL Sbjct: 61 EFPLPASFIWEMFTRVLADVPRQSPYNKGAMSWQLMTILPALLDRPAFAPLAAYLGGGDE 120 Query: 116 ---TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA-------QAWQ 165 D ++ +L+QL K ADLFDQYLVYRPDW+A+WE G + G Q WQ Sbjct: 121 QDPAGDPEQVRLWQLCQKVADLFDQYLVYRPDWIARWEEGEGLVGTESQDLAGVSGQDWQ 180 Query: 166 APLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 LW+ LV T L +HRANLY+ FI L+ P LP RVF+ GISALPP Y++ Sbjct: 181 PELWRELVARTLALSPSGYHRANLYEEFIHELQRTRDLPGKLPQRVFVFGISALPPRYVE 240 Query: 226 ALQALGKH--IEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENA 283 AL ALG +E+HL TNPCRYYWGD+ D LA+L + + Sbjct: 241 ALLALGSRPEVEVHLFVTNPCRYYWGDLLDRKTLARLENKLK------------------ 282 Query: 284 GQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDN------LLHN 337 + D Q NPLLAS GKLGRDY++ L +LE SQ ++AFVD+ + LL Sbjct: 283 -PGTDLDTLQGPANPLLASMGKLGRDYLHQLMELEVSQ-IEAFVDIDEVDASGNVRLLRA 340 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 IQ D+LEL +R + S +K P+DP D S+ H CH P RE+EVLHDRLLA+ Sbjct: 341 IQKDVLELGSRGEGQFD---LDSSYHKSPIDPADGSLQIHACHGPMRELEVLHDRLLALF 397 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 E DP+LTP+D++VM+ D++SY P+IQAVFG+ +P+A+SDR A Q P+L++F++L Sbjct: 398 ERDPSLTPKDVVVMMPDVNSYGPYIQAVFGA---RGQIPFAVSDRAASQESPLLQSFLAL 454 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L LP +R + ++LA+L+VP + RF++ ++ LR WV E+GIRWG+DD ELP Sbjct: 455 LHLPSARLGAGELLAILEVPAVLRRFELDDDEFNQLRVWVQETGIRWGLDDAYPERFELP 514 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGE----------------WQSVLPYDESSGLIAELV 561 ++W FGL RMLLG+AM + S+LPY E G + Sbjct: 515 RMSGNSWLFGLRRMLLGFAMGDGEPVAGMSFCADHGAGQQGAVASILPYAEIEGQQGLAL 574 Query: 562 GHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 G LA + L + L +E+ L EW D+L+ F+L D E E + LI Q Sbjct: 575 GKLAWFVDSLAEFLPRLQREQSLPEWSACLLDLLDRFYLADEEEERLLQLIRSQLADWQT 634 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMN 681 + A++ + LL+D L + L + R SQRFLAG VN CTLMPMRSIPFK VCLLGMN Sbjct: 635 QLGEARFDQPITADLLQDYLGKVLGESRSSQRFLAGQVNFCTLMPMRSIPFKQVCLLGMN 694 Query: 682 DGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSE 741 DGVYPR LAP+GFDLM+ +RGDRSRRDDDRYLFLEAL+SAQQ LYISY G S QDNS+ Sbjct: 695 DGVYPRTLAPMGFDLMAVASRRGDRSRRDDDRYLFLEALLSAQQGLYISYQGFSAQDNSD 754 Query: 742 RFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG---E 798 + PSVL+ ELIDY+ Q L GDE L+ + S R+ HL H P+ + P Sbjct: 755 KVPSVLLAELIDYVRQGFVLAGDERLDDEASGERLLKHLVVEHPLTPYSRSYFYPEAESR 814 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTL----PETVPLETLQRFWAHPVRAFFQMRLQ 854 +YA +WLPA + A + LP + + L L RF+ P + F RL+ Sbjct: 815 LFTYAADWLPALNPVRGAANFQSGELPLPPEWGREQGLELAELLRFYRQPAKYFLNRRLK 874 Query: 855 VNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE 914 V F ++ I D+EPF L+GL YQ+ LL++ + + D+ R + G LP G FG Sbjct: 875 VWFELNEANIEDSEPFELDGLQHYQLKALLLDSHLAEGDSAVRRERLQLTGLLPQGWFGS 934 Query: 915 IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSV 974 + + EM +LA+R+ Q++EID++ Q+ GW+ Q LL +P + Sbjct: 935 LLLDDLDAEMGKLAERLRPWVSEKQAVEIDISLAQGQLQGWIDT-QKGRLLVVKPGSFNG 993 Query: 975 AQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAP 1034 + W++HL S G++ LF K R P L+A++A L+ L+ + +GM P Sbjct: 994 KDLLLGWIQHLCLSLSCAPGDTLLFDAK-QSLRLPKLSADEARPKLAALVALWAQGMKRP 1052 Query: 1035 LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 L P + WLK + A L + G MV GEG D++ R + Sbjct: 1053 LPFFPNTAWDWLKAMEKEPDKP--------DAADKAALTRFNGGWMVTGEGQDVYVARCF 1104 Query: 1095 RQLTPETMEAIVEQSQRFLLPLFR 1118 +L + + ++ L PL + Sbjct: 1105 PELDEAVLSQLQALAREHLPPLLK 1128 >UniRef50_C4L7B2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B2_TOLAT Length = 1130 Score = 995 bits (2572), Expect = 0.0, Method: Composition-based stats. Identities = 469/1144 (40%), Positives = 655/1144 (57%), Gaps = 41/1144 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M RVYHSN+LDVL++L+ +++ L E ILVQS GMAQWL+ L+Q G+AANI Sbjct: 1 MFRVYHSNQLDVLKSLLAHLIQLSPLQPALAAETILVQSPGMAQWLKQALAQDLGVAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLP+SFIW MF +VLPE+P+E+ + K +M W+LM LLPQ ++ F L YL +D D Sbjct: 61 TFPLPSSFIWQMFHQVLPEVPQENPYTKPAMLWRLMQLLPQCMDDVLFAPLAGYLAEDHD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 R+ +QL + ADLFDQYLVYRPDW+ WE+G E Q WQ LW+ LV + Sbjct: 121 GRRCYQLCQRIADLFDQYLVYRPDWIVDWESGG--AQGAETQLWQPVLWRKLVA-LTEQQ 177 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HR NL+ FI TL++ LP R+F+ GIS+LPP YL+AL ALG+H E+HLL Sbjct: 178 ASHLHRVNLFSSFINTLKAGK-PKAVLPQRLFVFGISSLPPHYLEALMALGEHCEVHLLL 236 Query: 241 TNPCRYYWGDIKDPAYLAKLLTR----QRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 TNPCRYYWGD+++ + + + QRR ++ E E Q SD + G Sbjct: 237 TNPCRYYWGDLQEENQINQRVLNKLLAQRREQWQQAEQHKPLLPETDWQQLFSDEGEQQG 296 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 NPLL S GK GRDY+ LL+++ ++ E+DAF ++ D+ L + ++ Sbjct: 297 NPLLVSLGKQGRDYLSLLAEISAA-EIDAFAEINGDS----------LLHLLQQDLLELQ 345 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 + +R KRP+ D S+ H CHSP REVEVLHD+LL DPTLTP++++VMVADI+ Sbjct: 346 DGTRLRPKRPISASDRSLVLHGCHSPLREVEVLHDQLLQRFAADPTLTPKEVVVMVADIN 405 Query: 417 SYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y P++QAVFG+A +RY+P++ISDR A Q +P+L++F++LLSLPD R + ++L LL V Sbjct: 406 RYGPYVQAVFGNATGERYIPFSISDRSATQENPLLQSFLTLLSLPDQRCTATELLELLAV 465 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 P L RF + E L LR+W ESG+RWG++ + ELP +HTW FGL RMLLG+A Sbjct: 466 PALLKRFGLAEADLTTLRRWAMESGVRWGLESGDGERFELPPRERHTWSFGLERMLLGFA 525 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 + + V PY G A +G LA + Q+ R L RP+ EW + +L Sbjct: 526 SGNE-TLFADVAPYTAIEGQNAVKLGQLARFIAQVMALRDELETARPITEWQNLVDRLLL 584 Query: 597 AFFLP----DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 F+LP + + AA+ LI Q+ QY + +PL++ D L L+ R Q Sbjct: 585 DFYLPQEQLEEDDAAALNLIRSTLQSWQQRLSQMQYQEPLPLTVFHDHLQSELNAVRGGQ 644 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 +FLAG VN CTLMPMR+IPF++VCLLGMNDG+YPR + PLGFDLM+ +P++GDRSRR+DD Sbjct: 645 QFLAGRVNFCTLMPMRAIPFRLVCLLGMNDGLYPRSMPPLGFDLMADQPRKGDRSRREDD 704 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEAL++AQQ+LYISY+ S DN + PSVLV EL++Y ++ LP DE E Sbjct: 705 RYLFLEALLAAQQQLYISYVAHSAIDNRDLMPSVLVTELVEYCQRAFLLPEDEEKAETEQ 764 Query: 773 EARVKAHLTCLHTRMPFDPQNYQP------GERQSYAREWLPAASQAGKA---HSEFVQP 823 E + HL H +P+D + + P + SYA EWLPA + G+A + P Sbjct: 765 ETALHQHLLTGHPLVPYDRRYFSPTVPPATADLFSYAAEWLPALTPTGQAGFFDARLSLP 824 Query: 824 LPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQ 883 + L RF+ +PV FF+ RL+V F ++ + +TEPF L+ L +YQ+ ++ Sbjct: 825 EELQGKPEIELADWLRFFRNPVAGFFRRRLRVQFVEREAALEETEPFWLDKLQQYQLRER 884 Query: 884 LLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC-RQPGQSME 942 LL D R A G LP G FG + + + + LA + Q Sbjct: 885 LLRYQRLDVDQAVWQARLLAEGMLPDGEFGRLALQADAKNLAPLAAALQTWPLATAQRET 944 Query: 943 IDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRK 1002 L G Q+ G + +V L+R R S L + + +WLEHL A+G + L Sbjct: 945 FHLDFAGWQLLGSVGEVYAGQLVRHRVSKLKASWLVAIWLEHLALSAAGKLTQPTRLLAL 1004 Query: 1003 D----GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAML 1058 D GEW L+A+ A L + + EGM PL + + WL+ L Sbjct: 1005 DNGKLGEWLLAVLSADAAREQLLLWWQAFTEGMQRPLCLPVNTAWQWLEKATT--ESGCL 1062 Query: 1059 DDDSTLQKARTKFLQAYEGNM-MVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 DD+ +AR + Y G+ V GEG D + R + +L+ E E I E + + LLPL Sbjct: 1063 GDDAQQLQAREAAQKTYTGDGTFVSGEGQDTYLARCFPELSSEYWEEIEEWAVQLLLPLR 1122 Query: 1118 RFNQ 1121 + Q Sbjct: 1123 QHLQ 1126 >UniRef50_A1AQY6 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Desulfuromonadales RepID=A1AQY6_PELPD Length = 1061 Score = 974 bits (2517), Expect = 0.0, Method: Composition-based stats. Identities = 367/1121 (32%), Positives = 544/1121 (48%), Gaps = 93/1121 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + SNR++ L + +++ L PF PE+++VQS GM +WL M L++ FG+ AN Sbjct: 3 LTICTSNRMENLVEALCDVLKT-PLSSPFTPEILVVQSKGMQRWLAMKLAETFGVWANCT 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 +P P +W++F++ PE+P S F+ + M+W++M LLP L R++FT L HYL D D Sbjct: 62 YPFPNKVVWELFMKAFPELPDTSRFSPEVMTWRIMGLLPAFLGRQEFTPLNHYLDGDGDG 121 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 K FQL+ K AD FDQY ++RP+ L WE G + WQ LW+ L Sbjct: 122 LKKFQLAGKIADTFDQYTLFRPNMLLDWEGGKGGD-------WQELLWRELA-----TAD 169 Query: 182 PRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 HR + Q FI+ L LP R+ + GIS LP +L + KH + L Sbjct: 170 NGQHRGRIKQDFIKLLAQGHAEKESLPERIMVFGISYLPSYHLDIFTEIAKHTTVSLFLL 229 Query: 242 NPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLA 301 +PCR YWGDI +++ +R + GNPLLA Sbjct: 230 SPCRQYWGDIVSAKQMSRRPPEER-------------------------AYLEEGNPLLA 264 Query: 302 SWGKLGRDYIYLLSDLES--SQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 S GKL RD+ ++ + S + ++D ++D LL IQSDIL L Sbjct: 265 SLGKLARDFSNMVVEAGSIATDDVDLYLDPGEGLLLEAIQSDILNLR----------GTE 314 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 D+KR + P D S+ H CHSP RE+EVLHD LL +LE++ LTPRDIIVM DI++YS Sbjct: 315 GGDSKRRISPQDRSVQIHACHSPMREIEVLHDNLLFLLEQEKGLTPRDIIVMTPDIETYS 374 Query: 420 PFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 P+I VFG + +P++I+DR + + + LL LP SR V +L Sbjct: 375 PYISMVFGGCQDPLKKIPFSIADRTLAKEGQIASVILKLLELPGSRLSVTRVFDILQSAP 434 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 ++ RFD+ + L +R W+ ++ IRWG D+ + L LP +++WR GL R++LGYAM Sbjct: 435 VSRRFDLDIQELETVRSWIEDTRIRWGADESHRSSLGLPHYRENSWRAGLDRLMLGYAMP 494 Query: 539 SA-QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 + +LPYDE G + +G LA + ++ R LA +R L EW ML+ Sbjct: 495 EEGDFLFHGILPYDEMEGDATQALGKLAEFVARIERLARDLAAKRTLTEWRDAITTMLSD 554 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F D + + I Q++ G A + + V L ++R LA RL +E FL G Sbjct: 555 FAAADDDLAHELASINGVVQSLEDLGAKAGFSETVDLVVIRSWLASRLGEEEKGLGFLTG 614 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 V C ++PMRSIPF+VVCL+GMND +PRQ P GFDL+++ P+ GDRS RD+DRYLFL Sbjct: 615 GVTFCAMLPMRSIPFRVVCLIGMNDAAFPRQSRPPGFDLIARNPQPGDRSLRDEDRYLFL 674 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 E L+SA+ Y+SY+G+S++DNS PSVLV E +D IG E ++ Sbjct: 675 ECLLSARTHFYLSYVGQSVKDNSAIPPSVLVSEFLDAIGAGFT----------SGEMTLE 724 Query: 778 AHLTCLHTRMPFDPQNYQP-GERQSYARE----WLPAASQAGKAHSEFVQPLPFTLPE-- 830 L H F + SY+ E L A ++G+ PL E Sbjct: 725 QRLVTSHRLQAFSRSYFDATSGLFSYSAENCAALLDATQRSGEPALFITHPLKAAPEEMR 784 Query: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 V L L RF+A+P + + RL++ + + D EPF +EGL Y INQ+LL ++ Sbjct: 785 EVTLAQLVRFYANPAKYLLENRLKIRLEEVSTPLDDREPFAVEGLEAYGINQELLEKRLQ 844 Query: 891 QDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSME---IDLAC 947 L+ R G LP GE + E+ L ++ +E Sbjct: 845 GGSVHGLYATTRCRGILPPAQHGETVFADALAEVDNLVKKIGERTGGQPRLEAFFFHETI 904 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASG--GNGESRLFLRKDGE 1005 +++G L + + + +R + L ++ W+EHL+ A G L + KDG Sbjct: 905 GDFKLSGSLDGIWKERKISYRCAKLKAKDEIRGWIEHLLLNAFAPEGYPRESLVIMKDGS 964 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 F P+ E L L++ Y +G+ PL P S + + Sbjct: 965 TGFGPV--EHPTEQLGALLDCYWQGLHLPLRFFPASSLEFASSG---------------- 1006 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIV 1106 + +E M GE D ++ + Q + Sbjct: 1007 -LLKNARKKWESGYMHTGEEADPHFRLCFEQDADPLNKEFE 1046 >UniRef50_Q2LTC9 Exodeoxyribonuclease V gamma chain n=2 Tax=Bacteria RepID=Q2LTC9_SYNAS Length = 1113 Score = 972 bits (2514), Expect = 0.0, Method: Composition-based stats. Identities = 381/1143 (33%), Positives = 571/1143 (49%), Gaps = 71/1143 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + SNR++VL + ++ L P PE+I+VQS GM +W+ M L+ GI AN+ Sbjct: 4 LNIIASNRMEVLAEKLADVLAG-PLSSPLTPEIIVVQSRGMERWVSMQLAAFHGICANVR 62 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 FP P I D+F VLP E FN + +W++M+LL R F L YL DDS Sbjct: 63 FPFPRRMIQDIFHAVLPGWEAEQDFNPELAAWRIMSLLTVASSRPGFEPLAAYLHDDSQG 122 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 K FQLS + A LFDQYL++RP+ + WE G+ +WQA LW+ VE Sbjct: 123 LKRFQLSRQIARLFDQYLIFRPEMILNWEKRISD---GDEYSWQADLWRLFVEEGK---- 175 Query: 182 PRWHRANLYQRFIE-TLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 H A L + + LP R+ I GIS LPP YL A+ +E++ Sbjct: 176 -IVHPAVLRLSLQDVMIRRGNQLSACLPERISIFGISYLPPFYLDIFLAVSSFMEVNFFL 234 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NP R +W DI+ +++ + + +L S+ + GN LL Sbjct: 235 LNPSREFWFDIRSSREISREVKLVKGS---------VEKGMENEELSRSELYLEEGNSLL 285 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS G LGR++ L + +E + +V+ +LLH IQSDIL L Sbjct: 286 ASLGTLGREFWSFLGECSGREE-EYYVEPGETSLLHAIQSDILNLREGGGEA-------D 337 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 +D + + + S+ H CHSP REVEVLHD LL +LE DP+L P DI+VM +I++Y+P Sbjct: 338 ADGREVMFSEERSLQIHACHSPMREVEVLHDSLLDLLEADPSLQPHDIVVMTPEIETYAP 397 Query: 421 FIQAVFGSAPAD-------RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLAL 473 FI AVF + D +PY I DR PVL + +L LP RF + +VL+L Sbjct: 398 FITAVFETVDEDAPGLVDQPKIPYHIVDRATISGRPVLGGLLKILDLPLGRFAAGEVLSL 457 Query: 474 LDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLL 533 L+V + RF +TE + + +WV +SGIRWGID+ + LP ++W++GL RMLL Sbjct: 458 LEVAAIRNRFGLTEADIDQVSRWVADSGIRWGIDERSRLREGLPEIATNSWQWGLKRMLL 517 Query: 534 GYAMESAQ-GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 GYA+ + + ++P + + G A L+G LA +L + L+Q+R L +W + Sbjct: 518 GYALPARNNELFSGIMPCETAEGSEARLLGILAEFTERLFLTAESLSQDRTLSDWGSLLD 577 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 D+ + FFL D ++E + + Q + + + + L+++R L R Sbjct: 578 DISDRFFLGDEDSEPDIRNLRQLASDLKNLQEKTGFPEKISLAIVRSFLQDRFQATGADG 637 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 FL+ V C+L+PMRSIPF+V+CL+GMN+G YPR+ FDLM++ P+RGDRSRR+DD Sbjct: 638 GFLSRGVTFCSLLPMRSIPFRVICLMGMNNGDYPRRPQTPSFDLMARHPRRGDRSRRNDD 697 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEAL+SA+ LYISY+G+S++DNS PSV+V EL+DY+ + L Sbjct: 698 RYLFLEALLSARDTLYISYVGQSMEDNSRIPPSVVVSELLDYVRRGFVLKDCN------- 750 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPG--ERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 + L H F P + SY+ E AA+ K S + +P E Sbjct: 751 ---IDELLITYHPLQAFSPVCFTEESCRLFSYSEENRKAANTLLKRSS--LTSIPGAEAE 805 Query: 831 TV----------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQI 880 + + L F+ HP R F Q RL V D + + E F +EGL RY I Sbjct: 806 RLPEDPAMATQATIRDLIAFFRHPARFFLQRRLAVFLGEADIVLEENEHFDVEGLDRYGI 865 Query: 881 NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVI--ACRQPG 938 Q L+ +E E ++ A G LP+GA G+ ++ +++ + Sbjct: 866 EQLLMEKEIETGHMEEVYPVLAAQGLLPHGAVGQSRFDALKRDICHFVRSYKHILHSENI 925 Query: 939 QSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN---GE 995 +IDL G +++G L + GLL +R + L ++LW+ HL+ A+ G Sbjct: 926 PPRDIDLEVAGFRLSGRLEGLGSRGLLHYRYATLKGKDHLKLWIMHLLLHATDGPDGGDR 985 Query: 996 SRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQND 1055 L L K+G WR+ + ++A +L +LI YREG+ PL PE+ A+ Sbjct: 986 ESLLLGKNGLWRYSAI--DEARCHLEKLISLYREGLCRPLHFFPETSWAYAVKILRNGEL 1043 Query: 1056 AMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLP 1115 + ++S +A+EG+ RGEG D + + + +P+ + E S P Sbjct: 1044 SEEAEESA----WDAARKAWEGDDFQRGEGVDHYNRLCFGDFSPQDV-EFQELSLNVYRP 1098 Query: 1116 LFR 1118 L Sbjct: 1099 LLE 1101 >UniRef50_B8CMV5 Exodeoxyribonuclease V, RecC subunit n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CMV5_SHEPW Length = 1224 Score = 967 bits (2500), Expect = 0.0, Method: Composition-based stats. Identities = 397/1222 (32%), Positives = 625/1222 (51%), Gaps = 131/1222 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEP-EMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++ L ++ + P E ILVQS GM+ WL++ ++++ IAA Sbjct: 1 MLYLVQSNQMEALSQILATELTTPLPGAPLLLPEHILVQSPGMSTWLRLEIARQNNIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD- 118 ++FPLP+SFIW + +L ++PKE+AF K +++WKLM LLP L++++DF L +YL + Sbjct: 61 LEFPLPSSFIWQLCHTLLEDVPKENAFTKAAITWKLMELLPSLIDQDDFAPLANYLNNGN 120 Query: 119 --------------------------SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 KL+QL + AD+FDQYLVYRPDW+A WE Sbjct: 121 QGHGENDLQSQYLEIDTSETISASHPQSPLKLYQLCGQIADIFDQYLVYRPDWIAAWEAN 180 Query: 153 HLV-----EGLGEAQAWQAPLWKALVE-YTHQLGQPRWHRANLYQRFIETLESATTCPPG 206 + L AQAWQ LW+AL++ + L + ++HRANL+Q + L+ T Sbjct: 181 EPTLPPKGDKLAPAQAWQPILWRALIQFNANTLHKSQYHRANLHQALFDKLDDPNTSMTS 240 Query: 207 LPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRR 266 LP R+F+ GIS++ P L L L K I++ +L +PC++YWGDI DP A++ + Sbjct: 241 LPRRLFVFGISSMAPQTLDVLHHLAKRIDVIMLSLSPCQHYWGDIVDPRLRARMALQYAN 300 Query: 267 HSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---L 323 + E + + +VGNPLLA+ GK+GR+ + L+ +L L Sbjct: 301 KQKLEVE---------------WEDKLEVGNPLLANNGKMGRELLDLMLELPEEHTAFNL 345 Query: 324 DAFVDVTPDNLLHNIQSDILELENRAV-AGVNIEEFSRSDNKRPLDPLDSSITFHVCHSP 382 D + D D +LH +Q DIL+L R G + + D +R L D SIT CHSP Sbjct: 346 DCYQDPGIDCMLHGVQHDILQLSTRGQCLGPDASLYLTVDGRRMLQQDDHSITIRSCHSP 405 Query: 383 QREVEVLHDRLLAMLEE-----DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPY 437 REVE LHD LL ML + L P+DI++M+ D+ +Y+P+I AVF + Y+PY Sbjct: 406 LREVETLHDHLLEMLSKQTDSKGQPLAPKDIVIMMPDVAAYAPYIDAVFSAKQGSHYIPY 465 Query: 438 AISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWV 497 AI+DR A Q P++ +F+ LL++ SRF D++ +L+VP + RF++ ++ L L++W+ Sbjct: 466 AIADRGAVQESPLIASFLHLLNINQSRFGLTDIIGILEVPSVLRRFELDDDSLTILKRWL 525 Query: 498 NESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLI 557 ++G+RWG D + E +LPA Q+ W G+ R++LGY+ +Q L + G Sbjct: 526 EQAGVRWGRDGASRAEHQLPAFEQNAWALGIKRLILGYSFADNSPLYQQTLAVNGIEGQT 585 Query: 558 AELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQ 617 A+ +G L + L+ LAQ L E + +L AF+ D + + + I Sbjct: 586 AQALGKLLDFIEALDDVHAALAQNCSLTERIEQLEQLLAAFYSVDDDEQVQLQEIRDAIV 645 Query: 618 AIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCL 677 + E + + +P+ +L++ RL + R+ QR+LAG +N CTLMPMRSIPFK+VCL Sbjct: 646 TLAEELTESGHTTPLPIEVLQNWFNSRLSESRVGQRYLAGSINFCTLMPMRSIPFKIVCL 705 Query: 678 LGMNDGVYPRQLAPLGFDLMSQ-KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSI 736 LGMNDGVYPR P+GFDL++Q P++GDRSRR DDRYLFLEA++SA+Q+LYISYIG S Sbjct: 706 LGMNDGVYPRVQHPVGFDLVAQMDPRKGDRSRRLDDRYLFLEAILSARQQLYISYIGNSE 765 Query: 737 QDNSERFPSVLVQELIDYIGQSH---------------YLPGDEALNCDESEARVKAHLT 781 +D+SER PS+LV EL++Y ++ Y + A+ D+ E + L Sbjct: 766 RDDSERIPSMLVSELVEYCQLAYLPAKLALESKASADNYSKQEAAVFVDKIEQAISTQLI 825 Query: 782 CLHTRMPFDPQNYQPGE-------RQSYAREWLPAASQ------AGKAHSEFVQPLPFTL 828 C PFD + Y +QSY+ +W P A A K+ + F+ L Sbjct: 826 CKQPLQPFDERLYHSAHISDSFPLQQSYSAQWCPVAVSQTTTDIADKSSNRFINLDTCLL 885 Query: 829 P---------ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQ 879 E + L L RF+ +P + +F L+V+ + EPF L L RYQ Sbjct: 886 NTAQSDSEEVEEIELSALIRFFRNPAQYYFNRTLKVDLSINVRADDNDEPFSLNALERYQ 945 Query: 880 INQQLLNALVEQD---DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ 936 + L+ +E L R +A G++P F ++ ++ L R + + Sbjct: 946 LQSILIEHAIENQTESPDGELLERLKAQGNIPLKPFDDLLLSQYLHDITPLIGRSLYLKG 1005 Query: 937 P-GQSMEIDLAC-----------NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEH 984 QS+EI + +++ G + + GL+ +RP + ++++L H Sbjct: 1006 ESSQSIEIAIDIALVDGSKPVTDQSIKLVGRIDDLSAKGLVNYRPGTANGRDLIRVYLRH 1065 Query: 985 LVYCASGGNGESRL-------FLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 L CA G+ + +L G + F P+ A QA LS + +++G PL+ Sbjct: 1066 LCLCAMQGSTDITRLNQPINSYLLDIGHFHVFAPITAAQAKSQLSLWLTLFKQGQVQPLM 1125 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 +P + A+++ + + + + GEG + +QRL+R Sbjct: 1126 FMPRTALAYVEA------------EGDHTQKLREAQPKWLDEQSQLGEGMEPHFQRLYRF 1173 Query: 1097 LTPETMEAIVEQSQRFLLPLFR 1118 + + + +Q L PL Sbjct: 1174 PEDFSEQHFGDTAQTLLSPLIS 1195 >UniRef50_A6W0B0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Marinomonas RepID=A6W0B0_MARMS Length = 1131 Score = 966 bits (2497), Expect = 0.0, Method: Composition-based stats. Identities = 433/1155 (37%), Positives = 639/1155 (55%), Gaps = 61/1155 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M ++Y SNRL+ L L+ I+ ++PF+ E ILVQ+ GMAQWL+M L++ IAA + Sbjct: 1 MFQLYTSNRLEDLAVLLAKILAVSPPENPFDDEFILVQNPGMAQWLKMFLAESHSIAAGL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLP++F+W F + L +IP +S FNK + W+LM LL L +F L YL +D Sbjct: 61 VFPLPSTFVWQTFAQSLDDIPAQSEFNKPFLVWRLMRLLDSRLGDPEFQALSWYLEEDDT 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQAWQAPLWKALVEYT 176 + + FQL S AD++DQYLVYRPDW+ WE G + + E Q WQA LW+ LV Sbjct: 121 QIRRFQLCSSIADIYDQYLVYRPDWIKSWEGGEAQDPKLTAIFEQQPWQAILWRDLVADV 180 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL--GKHI 234 Q G +HR NL + + +S+ P G+P R+FI G+S+LPP L++L+ L I Sbjct: 181 SQRGTSLYHRGNLIEALHDKTQSSA-RPVGVPERIFIFGVSSLPPNTLESLRVLAASGWI 239 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++HL NPCR+YWGD+ D YL + + RQ ++D Sbjct: 240 DVHLFLQNPCRFYWGDVVDKHYLGREIKRQ-----------------TLKPGLSTDTLHL 282 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPD---NLLHNIQSDILELENRAVA 351 NPLLASWG+LGRDYI L ++ + EL F D + LL IQ D+L LEN Sbjct: 283 DANPLLASWGRLGRDYIAQLQEMADN-ELVVFEDYRTEQSTGLLQWIQQDVLTLENHGSQ 341 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 + + + P+ D SI H+CHSP REVEVLHD+LL M E DP+LTP+DIIVM Sbjct: 342 QERDAKIRDASYRHPIAADDQSIRVHLCHSPLREVEVLHDQLLQMFESDPSLTPKDIIVM 401 Query: 412 VADIDSYSPFIQAVF----GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 + D+++YSPF++AVF GSA +++P+A+ D+ +P+++A++ LL L +SRF Sbjct: 402 LPDVNTYSPFVKAVFGSVKGSAQGRKHIPFALIDQSGGMENPIVDAYLYLLGLGESRFTL 461 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 +++++L+VP + ARF++T + L +RQW E GIRWG+D ++ +LP HTW G Sbjct: 462 SELISVLEVPAVLARFELTADELERIRQWSTEVGIRWGLDGKTAQQHDLPMQESHTWLNG 521 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 + RMLLGYAM W+ L Y + GL A + G LA L+ +N + L + +EW Sbjct: 522 VRRMLLGYAMG-HDHIWEGTLSYGDVEGLEASVAGKLAEFLVAINDAQAKLMESLAPKEW 580 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 + + FFL D + L+ +Q A+ + A + + +LR L+ L + Sbjct: 581 ISTLYYLAERFFLVDEDDA-FPALLSKQLDALTLQWQQAHFDAPLDQQVLRQLLSPLLQE 639 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + QRFLAG VN CTLMPMRS+PFKV+C+LG+N+G YPR +AP+GFDLM + + GDRS Sbjct: 640 SQGGQRFLAGRVNFCTLMPMRSVPFKVICVLGLNEGDYPRSVAPMGFDLMVGQYRSGDRS 699 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 RR+DD+YLFLEAL+SA+ YISY+GRSIQDNSE+ PS+LV EL++YIGQS GD+AL Sbjct: 700 RREDDKYLFLEALMSARDCFYISYVGRSIQDNSEKNPSILVSELLEYIGQSCVFEGDQAL 759 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQPGE-------------RQSYAREWLPAASQAG 814 D+++ + L H PF+ Y + SY +WLPA Sbjct: 760 TPDDAQKALLEKLILEHPLQPFNAAYYFQPQGSSHESTDQFDKRLYSYDEQWLPALLSVP 819 Query: 815 --KAHSEFVQPLPFTLPE-TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI 871 + F P + L+ L RF HP R F Q RL+ ++ E + EPF Sbjct: 820 VDEEAQAFSPLEGLEQPRIDLALDELSRFIGHPTRYFTQRRLKAYLSLQEEEEKEDEPFA 879 Query: 872 LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV 931 L+GL+ YQ+ + LL A+++ D ++ R G LPYGA G + + + +QL + Sbjct: 880 LDGLAGYQLREGLLQAMLKG-DEDQFVERLSLMGALPYGALGRLSLQQSRGQCRQLLSVL 938 Query: 932 IAC-RQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS 990 + + +E++LA + + WL L +R LS Q MQ+W+EHL CA Sbjct: 939 QGYALEECEPIEVNLAMGSIVLQAWLDLPTATTRLSYRIGDLSAHQKMQMWIEHLALCAQ 998 Query: 991 GGNGESRLF-LRKDGEW---RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWL 1046 G E L L K G+ F + A YL+ ++ ++G+ P+ + +S AW Sbjct: 999 GTPKEHHLINLTKTGKLLQHSFIIIPPNDAQDYLNTMLALLQQGLCQPIALPAKSADAWC 1058 Query: 1047 KTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIV 1106 K+ ++ + D D ++A + + R E DD ++QR + L + + V Sbjct: 1059 KSYCSSKT--LEDADIAWEQALKLYQD--NSSAFTRSEVDDAYWQRYFPDLNRQKAQ-FV 1113 Query: 1107 EQSQRFLLPLFRFNQ 1121 ++ LP+ R + Sbjct: 1114 SLCEQIWLPMHRHLE 1128 >UniRef50_Q1LST9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LST9_BAUCH Length = 1098 Score = 962 bits (2487), Expect = 0.0, Method: Composition-based stats. Identities = 495/1132 (43%), Positives = 706/1132 (62%), Gaps = 51/1132 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SN+LDV+ +++ ++ +L + +PE+ILVQ+ + QWLQ+ L+ GIAANI Sbjct: 1 MFTIYQSNKLDVITSILISLISERKLRETLQPEIILVQNHNITQWLQVELAMSLGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F P FI+ + +LPE+ E F++ +SWK+ +LP ++ + +L+R YL +D D Sbjct: 61 RFSTPTIFIYKLLSSILPEMNLEMFFSRSLISWKIRLILPHFYDQPNCSLIRQYLHNDVD 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 KRK F LS K ADLF QY +YRPDWL W+ G V LG Q WQA LW+AL+E Sbjct: 121 KRKQFHLSEKIADLFYQYFLYRPDWLEIWQQGKRVASLGPDQNWQALLWRALIEENMLS- 179 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 NLYQ FI+ ++ T P GLP R+FI +S+LPP+YLQ LQAL HI+IH + Sbjct: 180 ------TNLYQLFIQAMKHMTVRPSGLPDRIFIYAVSSLPPIYLQVLQALSNHIDIHFML 233 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NP R R + S+ + + ++ + NPLL Sbjct: 234 VNPYR---------------FNRINKQSYTQQPIYSTNTNQKSI------------NPLL 266 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 WGK G+D I LLS+L++ Q++DAFV+ L +S + L+ + + Sbjct: 267 EYWGKQGKDTISLLSELKNIQKIDAFVE------LSQEKSLLSLLQLDILEDNIVCHLHN 320 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + KR L D S++ +VCHSPQRE+EVLHD +LAM+ ++ +L P +IIVMV DI+ Y P Sbjct: 321 AKVKRLLQHNDHSLSINVCHSPQREIEVLHDAILAMIAQEQSLLPCEIIVMVTDINLYIP 380 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 I+AVFG+A DRYLP+ I DR + ++PVL F+ LL LP SR E+VL+LLD VLA Sbjct: 381 AIKAVFGNATTDRYLPFTIYDRTVKHTNPVLSVFLRLLKLPFSRLTIEEVLSLLDTSVLA 440 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 F I++ L LR+W+ ESGIRWG+DDD R+L LP T QHTW FGL RMLLGYA++S+ Sbjct: 441 KHFSISQIDLTILRKWIVESGIRWGLDDDTQRDLMLPTTSQHTWEFGLNRMLLGYAIDSS 500 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 G WQ +LPYDESSG AEL+G+LA L+M+L WR+ L + R L EWL DM+ FF+ Sbjct: 501 NGIWQGILPYDESSGKRAELIGNLAELIMRLRRWRKNLKKPRKLTEWLHCASDMIKDFFV 560 Query: 601 --PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 + E E A+ +I QWQ I+ G+ A Y V ++ L DEL RL Q+ ++Q F++ Sbjct: 561 TNVNKEVETALVIILDQWQQILQCGIKANYDQPVSIARLYDELNMRLQQKHLNQSFISSN 620 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 + CT+MP SIPFKV+CLLGMNDG+YP + PL FDLM Q+P+RGD +R D+DRY+FLE Sbjct: 621 IIFCTIMPTSSIPFKVICLLGMNDGIYPHSILPLNFDLMKQQPRRGDYNRYDEDRYIFLE 680 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 L+SAQQKLYIS+IG IQDN+ R PS+L+ EL +YI Q+ YL GDE L+ ++ Sbjct: 681 LLLSAQQKLYISFIGYFIQDNTLRSPSILISELTNYITQNFYLSGDEQLDEHTCNLHIRK 740 Query: 779 HLTCLHTRMPFDPQNYQPGERQ-SYAREWLPAA----SQAGKAHSEFVQPLPFTLPET-- 831 HL H+RMPF P+N+ PG S+A+EWL AA + F+ T + Sbjct: 741 HLWQWHSRMPFAPENFIPGSINQSFAKEWLLAAKASFRSNNTQNRFFMNKSLATKKQENM 800 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ 891 + L L++F+ HPVR +FQ RL + E +I + EPFI++G+S Y+I +++LNAL+E Sbjct: 801 LLLANLKKFYQHPVRTWFQQRLDLWLYNEPQDISENEPFIVKGISHYKIKEKILNALIEG 860 Query: 892 DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC-RQPGQSMEIDLACNGV 950 + + ++++ RAAG L YGAFG+++W QC +M L D++ + +I L + Sbjct: 861 KNLDVIYQQVRAAGLLAYGAFGKLYWTKQCSKMIYLVDQIRTYILPEQHTEKIQLNIDNT 920 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPP 1010 + GWL ++Q +GL+RW P LS+ G+QLW+EHL YCA GGNG+SR+F + +W FP Sbjct: 921 VLIGWLSKIQCNGLVRWYPHNLSMKHGLQLWIEHLAYCAIGGNGQSRMF-GTNSQWCFPV 979 Query: 1011 LAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTK 1070 L++++A YL LI+GY +GMS PLL+L SGGAWL C++ + + + + AR Sbjct: 980 LSSDEAKKYLLTLIKGYWQGMSEPLLLLNRSGGAWLTHCFNKKTRMINWEKDCQRTARNY 1039 Query: 1071 FLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 ++A+EGN + GE D++ Q+L QL + AI++ + + LP +FN S Sbjct: 1040 MIKAWEGNHLFPGESSDLYLQKLILQLNENYIIAIIKAVECYFLPPLKFNIS 1091 >UniRef50_A3QEU7 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Shewanella RepID=A3QEU7_SHELP Length = 1192 Score = 961 bits (2484), Expect = 0.0, Method: Composition-based stats. Identities = 398/1202 (33%), Positives = 608/1202 (50%), Gaps = 111/1202 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERE-RLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SNR++ L L+ ++ P E ILVQS GM+ WL++ ++++ +AA Sbjct: 1 MLYLVQSNRMEALAELLANELQTPLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQVAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD- 118 ++FPLP+SFIW + ++LP++PKE+AF K +M+WKLM LLP LL +E F L +YL DD Sbjct: 61 LEFPLPSSFIWQLCHQLLPDVPKENAFTKPAMTWKLMELLPGLLSQEVFAPLANYLKDDA 120 Query: 119 -------SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-----VEGLGEAQAWQA 166 KLFQL S+ AD+FDQYLVYRPDW+ WE G L Q WQ+ Sbjct: 121 ILTDSAAPHSLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKERPLDANQQWQS 180 Query: 167 PLWKALVEYTHQ-LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 LW+ L+ Y H L Q R+HRANL+Q + L LP R+F+ GIS++ P L+ Sbjct: 181 LLWRELIHYNHHTLNQSRYHRANLHQALFDALSDPLCDLSKLPPRLFVFGISSMAPQTLE 240 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 L L K I++ +L +PC++YWGDI DP A++ + + Sbjct: 241 VLYFLAKRIDVVMLNLSPCQHYWGDIVDPKLRARMALQY---------------GDKQQL 285 Query: 286 LFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDI 342 + + + +VGNPLLA+ GK+GR+ + L+ +L + + + D ++LLH +Q DI Sbjct: 286 AIDWESKLEVGNPLLANNGKMGRELLDLILELPENDTNFNFECYQDPGSNSLLHGVQQDI 345 Query: 343 LELENRAV-AGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 LEL R G + E + + +R L D S+T CHSP RE+E LHD LL L + Sbjct: 346 LELCTRGETLGPDAELYLTTKGRRVLKIDDDSLTLRSCHSPLRELETLHDHLLEQLSQSD 405 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 L P+DI+VM+ D+ +Y+P+I AVF S D ++PYAI+DR A Q P++ +F+ LL L Sbjct: 406 GLAPKDIVVMMPDVAAYAPYIDAVFASKRGDHFIPYAIADRGAAQESPLINSFLHLLGLN 465 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 SRF D+L +L+VP + RFD+ ++ L +R+W+ ++G+RWG D + + +LPA Sbjct: 466 KSRFALTDILGILEVPAVMRRFDLDDDDLLLIRRWLEQAGVRWGRDQHSRQAQQLPAFEH 525 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 ++W FG+ R++LGY+ + L G A+ +G L + + ++ + L + Sbjct: 526 NSWAFGIKRLILGYSFSDEAPIYHDSLALPGVEGQSAQALGKLLNFIEAIDEFNLALGEH 585 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 PL + + ++ F+ E + + Q + E QY + L ++++ Sbjct: 586 CPLSVRITQLQTLVETFYDCVDEELSQKQELLQAITRLSEELTATQYQSELELEVMQNWF 645 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK- 700 + L + R+ QR+LAG VN CTLMPMRSIPF +VCLLGMNDGVYPR P+GFDL++Q+ Sbjct: 646 TRHLTESRVGQRYLAGSVNFCTLMPMRSIPFMLVCLLGMNDGVYPRVQHPVGFDLVAQEG 705 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG---- 756 P++GDRSRR DDRYLFLEAL+SA+++LYISYIG S +DNSER PS+LV ELI+Y Sbjct: 706 PRKGDRSRRLDDRYLFLEALLSAREQLYISYIGHSERDNSERIPSMLVSELIEYCQLCYL 765 Query: 757 --------QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE---------- 798 + + + E + L PFD + Y E Sbjct: 766 PENCAHLLKGSNADDTSTADIAKIELAILDQLIITMPLQPFDERLYLADESEGAECEGAK 825 Query: 799 ------RQSYAREWLPAASQAGKAHSEFVQPLPFTLP-----------------ETVPLE 835 RQSY+ +W P A + Q E + L Sbjct: 826 SEPRRLRQSYSEQWCPRALTEQDKQHDGEQGAKPASAGHFIEAPLSLVADEDKGEPLELS 885 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV---EQD 892 L RF+ +P + FF L+++ + EPF L LSRYQ+ L+ V ++ Sbjct: 886 ALIRFYRNPAQYFFNRTLKLDLNLSIQADENDEPFALNPLSRYQLQSTLIEDAVKSGDER 945 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-GQSMEIDL---ACN 948 + L R R +G LP F ++ + +++ L R + + + +IDL Sbjct: 946 PSSELLERLRLSGQLPLAPFDDLLLKQYQHDIRALVGRTLYLQGESSHTQDIDLLLSDSA 1005 Query: 949 GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS-----------GGNGESR 997 + G + V GL+ +RP + ++++L HL AS + Sbjct: 1006 ATALVGRIDGVSAKGLVNYRPGTANARDLIRVYLRHLCLNASVSDNSDVERHEATPWQRH 1065 Query: 998 LFLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 +L G + F P+ EQAL+ LS E Y +G S PL +P + A+++ Sbjct: 1066 SYLLDIGHFHAFAPITPEQALNQLSLWAEHYHQGQSQPLPFMPRTAFAYVEA-------- 1117 Query: 1057 MLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPL 1116 + + + GEG + YQRL+ + + L P+ Sbjct: 1118 ----EGEHIEKLIAAQPQWLDEQSNLGEGQEAHYQRLFTFPDDFSEAGFGTIASTLLSPM 1173 Query: 1117 FR 1118 Sbjct: 1174 LS 1175 >UniRef50_Q3IJ13 Exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=3 Tax=Alteromonadales RepID=Q3IJ13_PSEHT Length = 1099 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 391/1134 (34%), Positives = 605/1134 (53%), Gaps = 55/1134 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML + SNR++ L+A +++ L PF+ E++LVQS GM+QWL++ LS+ G+AA + Sbjct: 1 MLNIIQSNRMEALQAQFHQLLKTNPLASPFDKEVVLVQSPGMSQWLKIGLSENLGVAAQV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DFPLP+SFIW ++ ++LP +PKESAFNK +++WKL +LP ++ + L+ YL D D Sbjct: 61 DFPLPSSFIWQLYQQLLPNVPKESAFNKPNLAWKLFAILPSCIDEPLYLPLKTYLEGDID 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETG--HLVEGLGEAQAWQAPLWKALVEYTHQ 178 +K F L K AD++DQYL+YRP W+A W++G L + WQ LW+ +V+ + + Sbjct: 121 GQKTFALCEKIADVYDQYLMYRPHWIATWDSGIDELDDVDVTIAPWQPDLWRRIVQLSLE 180 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 LGQ ++HRAN+ + + LE+ LP R+ + GISA+ L+ AL + E+ L Sbjct: 181 LGQSQFHRANMQGQLLAALETMDNSL--LPQRISLFGISAIASSQLEVFTALSEKTEVFL 238 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 F NP +YWGDI D AK+ + + +++ Q + +GNP Sbjct: 239 FFFNPSEHYWGDIIDEKTAAKISAKYAKMP--------LVEAQQKKQTNPDEEYYFIGNP 290 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAV-AGVNIEE 357 LL+SWGKLGRDY L L+ ++ +D F+DV D LL IQS+I +L + N E Sbjct: 291 LLSSWGKLGRDYFEQLVQLD-ARWIDGFIDVFDDTLLGQIQSEIYQLAFKGESLTDNKEW 349 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 F + K P+ D+SIT CH+P REVE LHD LL + ++P LTP+DIIVM+ D+ + Sbjct: 350 FINDEGKLPISATDTSITLSDCHTPLREVERLHDYLLNLFNQNPALTPKDIIVMMPDVGT 409 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 YSP+I+AVFG A R++PYA++D Q +PVL +F SL +LP SRF D+L LL V Sbjct: 410 YSPYIEAVFGGAQGSRFIPYALADLAIEQENPVLSSFASLANLPFSRFGVSDILDLLQVT 469 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 +A +F + ++ W+ G++WGI+ D+ +LPA +TW+ GL R+LLG AM Sbjct: 470 QIAEKFGLEAHEYEQIQYWLERVGVKWGINADHKSSFDLPAIDLNTWQHGLNRLLLGIAM 529 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Q + + DE G+ + + L + L ++ L + L V ++L+A Sbjct: 530 RDEQCPFNGIYSADEVEGMALDTLNKLVHFIDVLQSFKEQLTPDDTLTNKAHVLSELLSA 589 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 + +++ + +++ + + Y AV ++ + Q + ++ + QRFL G Sbjct: 590 IYESESDDSWDLLVLQNVLEELQKHHNNGDYSKAVSQRIVSYLIKQGIQEKGVGQRFLVG 649 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRSRRDDDRYLF 716 VN CTLMPMR++PFKVVC+LG+ND YPR + P+GFDL+ K ++GDRSR+ DDRYLF Sbjct: 650 QVNFCTLMPMRAVPFKVVCMLGLNDADYPRNVQPIGFDLVPYSKKQKGDRSRKLDDRYLF 709 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 LEAL+SA+ LY+SYIGRS DN R PS LV EL++YIG+S L D+SE + Sbjct: 710 LEALLSARDNLYMSYIGRSCFDNQPRMPSTLVSELLEYIGRSFAL-------SDDSEKTL 762 Query: 777 KAHLTCLHTRMPFDPQNYQPGER-------QSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 L PF+ Y E+ SY WLP+ + V L T P Sbjct: 763 PECLISQQHLQPFNSHYYLANEQANTVLSNHSYNPIWLPS----ESITPQVVSALNATPP 818 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 E + L+ R + +F+Q L + + + D EPF L+ L RY ++L A + Sbjct: 819 EQLELDVFIRSVCNAQESFYQQSLGLRLPQFNEVVKDEEPFSLDALRRYFYLDEILEANI 878 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC--RQPGQSMEIDLAC 947 + + G+LP G + +E+ + LA +V +E+ L Sbjct: 879 NELPLST--EQILQRGELPQANVGSLIFESMQHRVDALAGQVKEQIKGGKSDPIEVALEL 936 Query: 948 NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWR 1007 +I GWL + + +R + + ++ ++ HLV + E+ L L D + Sbjct: 937 ENTKIEGWLNHIYLQKQVFYRSASIKAKDLIKGFIYHLVAQSMEQQVET-LILGLDKQVT 995 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 F P++ A L E Y+ + P+ P SG ++K+ D + KA Sbjct: 996 FAPISKTDADALLVDWFELYKALRNEPVAFFPVSGYEYVKSGGD------------IAKA 1043 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 +KF Y G RGEG++ + + + L + ++ S + L PLF + Sbjct: 1044 MSKFSPQYIG----RGEGENPYIRLTVQSLND-CQDEFIQWSDKLLAPLFAHAK 1092 >UniRef50_B8E565 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Shewanella RepID=B8E565_SHEB2 Length = 1274 Score = 957 bits (2473), Expect = 0.0, Method: Composition-based stats. Identities = 407/1254 (32%), Positives = 633/1254 (50%), Gaps = 165/1254 (13%) Query: 1 MLRVYHSNRLDVL-EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML++ SN+++VL L ++ + E ILVQS GM+ WL++ ++++ GIAA Sbjct: 1 MLKLIQSNQMEVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD- 118 ++FPLP+SF W + +LP++PK++AF K +M+WKLM LLP++L+ + F LRHYL + Sbjct: 61 LEFPLPSSFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDAFGPLRHYLGNTL 120 Query: 119 ---------------------SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH---- 153 +D KL+QL + AD+FDQYLVYRPDW+ WE Sbjct: 121 DNRSTTNSADTSEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPES 180 Query: 154 LVEGLGEAQAWQAPLWKALVEYTH-QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVF 212 L + L E Q WQ LW+AL+ + +L Q +HRANL+ I L + T LP R+F Sbjct: 181 LTKPLNEDQRWQPILWRALIAFNRDELNQSHYHRANLHSDLIAALNNPDTSLAQLPQRLF 240 Query: 213 ICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDR 272 + GIS++ P L+ L L I++ +L +PC++YWGDI DP A++ + Sbjct: 241 VFGISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAE 300 Query: 273 ELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ---ELDAFVDV 329 + + +VGNPLLA+ GK+GR+ + +L +L + D + + Sbjct: 301 ---------------LWEDKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEP 345 Query: 330 TPD--------NLLHNIQSDILELENR-AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCH 380 D ++LH +Q DILE++ V G + E + +N+R L D SI CH Sbjct: 346 CDDPNDPHSHASMLHGVQYDILEMQTLDRVLGPDAELYQNVENRRLLKRDDQSIRVKSCH 405 Query: 381 SPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAIS 440 SP REVE LHD LL +L LTP+DI+VM+ D+ +Y+P+I AVF + Y+PYAI+ Sbjct: 406 SPLREVETLHDHLLELLSNHADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIA 465 Query: 441 DRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNES 500 DR A Q P++ +F++LL + SRF D+L++L+VP + RF + ++ L+ +R+W++E+ Sbjct: 466 DRGAAQESPLINSFLNLLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEA 525 Query: 501 GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL 560 G+RWG D+ + + +PA Q++W FG+ R++LGYA+ +Q L G A+ Sbjct: 526 GVRWGRDEQSRLKQGVPAFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQA 585 Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII 620 +G L + + L+ + LA + L ++L+AF+ D + + I A+ Sbjct: 586 LGKLLNFIEVLDETAQILALPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALE 645 Query: 621 AEGLGAQ-------------------------YGDAVPLSLLRDELAQRLDQERISQRFL 655 E L A G ++ + +L+ QRL + R+ QR+L Sbjct: 646 QELLSAGKPLDTSPLAFSLDISPLAPLAQQSISGLSLSIEVLQQWFNQRLTESRVGQRYL 705 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP-KRGDRSRRDDDRY 714 AG VN CTLMPMRSIPFKVVCLLGMNDGVYPR P+GFDLM+ ++GDRSRR DDRY Sbjct: 706 AGSVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRY 765 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL--------PGDEA 766 LFLEAL+SA+++LYISYIGRS +DNSER S+LV ELI+Y + Sbjct: 766 LFLEALLSAREQLYISYIGRSERDNSERIASMLVSELIEYCQLCYLPETLLAQSQKASSP 825 Query: 767 LNCDESEARVKAHLTCLHTRMPFDPQNYQPGER----------------------QSYAR 804 ++ +++E + + PFDP+ YQ + QSY++ Sbjct: 826 IDPEDAEKALYNAIVSHQPLQPFDPKLYQAAVKSDDENSSNIDGSSISQHKSGIGQSYSQ 885 Query: 805 EWLPAASQAGKAH--------------SEFVQPLPFTLPET-----------VPLETLQR 839 +W P + A H ++ +P T + V + L R Sbjct: 886 QWCPPNADAAGTHAGRFIGAQTRIMLEADEQDSMPDTEAQPASVREQQQSKQVDVSALIR 945 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE---R 896 F+ +P + FF L+V+ + EPF L L RY + QLL+ + Q E Sbjct: 946 FFRNPAQYFFNRTLKVDLSLNIQADDNDEPFSLNALERYMLQAQLLDDAIGQGLTEPDIE 1005 Query: 897 LFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLAC--------- 947 L +R +A+G LP F ++ +++ L R + + S D+ Sbjct: 1006 LIKRLKASGSLPMQPFDDLLLRQYQHDIKPLIGRTLFLKGEQTSSHADIKLVFDLPITAG 1065 Query: 948 --NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGE 1005 V + G + + P GL+ +RP ++L+L HL A G S L G Sbjct: 1066 KSQQVLLQGRIDDISPKGLVNYRPGSAHGRDVLRLYLRHLCLMAMGHTHASYLL--DMGH 1123 Query: 1006 WR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 + P+ AE+A L+ L+ + +G PL +P + A++ + D L Sbjct: 1124 FHAIAPITAERAHALLADLLVLFYQGQQYPLCFMPRTSLAYV--------SCEGEHDERL 1175 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 Q+A ++L GEG++ YQRL+ + ++ ++R P+ Sbjct: 1176 QQALPEWLDE----QSQLGEGNEPHYQRLFSFPRDFSEDSFGALAERIYRPMVS 1225 >UniRef50_Q080D9 Exodeoxyribonuclease V, gamma subunit n=6 Tax=Shewanella RepID=Q080D9_SHEFN Length = 1270 Score = 954 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 395/1262 (31%), Positives = 620/1262 (49%), Gaps = 171/1262 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVE-RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++VL + ++ R E +LVQS GM+ WL++ +++ GIAA Sbjct: 1 MLTLIQSNQMEVLSEQLAKLLAIRLDNVSLLASEHVLVQSPGMSTWLRLEIAKHNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 + FPLP+SF W + +LP++PK++AF K +M+WKLM LLP LL+ DF+ L+ YL+ Sbjct: 61 LSFPLPSSFTWQLCHDLLPDVPKDNAFTKAAMTWKLMDLLPSLLDNPDFSPLKQYLSPQV 120 Query: 120 DK---------------------------------------------RKLFQLSSKAADL 134 D KLFQL + AD+ Sbjct: 121 DTTTDIAATDILDTDVDANTNTDIETETNIHTANSHAISQLNQSHDAIKLFQLCGRIADI 180 Query: 135 FDQYLVYRPDWLAQWETGHLVE------GLGEAQAWQAPLWKALVEYT-HQLGQPRWHRA 187 FDQYLVYRP+W+ WE + L E Q WQ LW+ L++Y H L +HRA Sbjct: 181 FDQYLVYRPEWILAWEQNQPLSSIDNRLALDENQQWQPILWRTLIDYNQHHLHASHYHRA 240 Query: 188 NLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYY 247 NL+ I TL + T LP+R+++ GIS++PP L L L I++ +L +PC++Y Sbjct: 241 NLHADLIATLANPDTDLSMLPARLYVFGISSMPPQTLDVLYHLASRIDLIMLSLSPCQHY 300 Query: 248 WGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLG 307 WGDI +P A++ + D+ + + + +VGNP+LA+ G++G Sbjct: 301 WGDIIEPKTRARMALQYANKKQLDQ---------------DWEDKLEVGNPILANNGQMG 345 Query: 308 RDYIYLLSDLESSQEL---DAFVDVTPDNLLHNIQSDILELENR-AVAGVNIEEFSRSDN 363 R+ + LL L D +V+ P+NLLH +Q DIL++E G N + Sbjct: 346 RELLDLLLSLPPEHTDFGYDCYVEPEPNNLLHGVQYDILQMETLGQPLGPNSSVYQDIHA 405 Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 +R L P D SIT CHS REVE LHD LL +L + L+P+DI++M+ D+ +Y+P+I Sbjct: 406 RRTLLPSDDSITLRSCHSALREVETLHDHLLELLSNNSDLSPKDIVIMMPDVAAYAPYID 465 Query: 424 AVFGSAP-----------ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 AVFG+A D Y+PYAI+DR A Q P++ +F+SLL++ SRF D++ Sbjct: 466 AVFGTANSQYFADKNPQKGDYYIPYAIADRGAAQESPLINSFLSLLNINQSRFGLTDIIG 525 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 +L+VP + RF + ++ L +R+W++++ +RWG + +L + Q++W FG+ R++ Sbjct: 526 ILEVPAILRRFQLDDDELSLIRRWLDDANVRWGRSEQTRSQLGVQPFTQNSWAFGIKRLI 585 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LGYA ++ L G ++ +G L + L ++ + A + E L + Sbjct: 586 LGYAFNDDADIYRETLMVQGIEGQSSQALGKLLNFLETIDTYFNLFANDYSTAERLEQLQ 645 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 +L + + + I + E A + V + +L+ QRL + R+ Q Sbjct: 646 QLLADCYDTTDDEREQIQAIRDALVTLDTELESAGHQGQVDIEVLKQWFNQRLTESRVGQ 705 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ-KPKRGDRSRRDD 711 R+LAG VN CTLMPMRSIPFKVVCLLGMNDGVYPR P+GFDLM+ PK+GDRSRR D Sbjct: 706 RYLAGSVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHFGPKKGDRSRRLD 765 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD------- 764 DRYLFLEAL+SA+++LYISYIG S +DN+ER S+LV EL++Y S+ Sbjct: 766 DRYLFLEALLSAREQLYISYIGHSERDNAERIASMLVSELVEYCQLSYLPQSLQQQLEQQ 825 Query: 765 EALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER---------QSYAREWLPA-ASQAG 814 +N D+++ V A L PFD + ++ S+ +W P A+ Sbjct: 826 AEINLDDADKAVLAQLIQAQPLQPFDAKLFRETPLSAHSVNKLQHSFNAQWCPPPANATI 885 Query: 815 KAHSEFVQPLPFTLPE------------------TVPLETLQRFWAHPVRAFFQMRLQVN 856 H F Q LP + + + L L RF+ +P + FF L+V+ Sbjct: 886 NNHIFFEQALPLSAEQADEVFAHTHINSEGIKVVELELSALIRFYRNPAQFFFNRSLKVD 945 Query: 857 FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE---QDDAERLFRRFRAAGDLPYGAFG 913 + + EPF L L RY + ++L+ +E L + + +G+LP F Sbjct: 946 LSLDIQADDNDEPFSLNALERYLLQSRMLDNAIEHQLDSPDFELLSKLKTSGELPMAPFD 1005 Query: 914 EIFWETQCQEMQQLADRVIACR--QPGQSMEIDLACN----------------------- 948 ++ +++ L +RV + Q ++ +DL + Sbjct: 1006 DLLINQYLRDISPLINRVQFLQDQQAMHTLNVDLNFDLPMQDFPAYALSVQGLPEQADTT 1065 Query: 949 -----GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRL----- 998 V + G + + P GL+ +RP ++++L HL A + S + Sbjct: 1066 HSSIVRVNLVGRIDDILPKGLVNYRPGTAHGRDFIRVYLRHLCINAMANSSTSGMGKNQF 1125 Query: 999 -FLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 +L G + F P+ AEQA L + I G+ +G + PL +P++ A+++T Sbjct: 1126 SYLLDIGHFHAFAPITAEQAQAQLMRFISGFIQGQTQPLCFMPKTAFAYVET-------- 1177 Query: 1057 MLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPL 1116 D ++ K Q ++ GEG D QRL+ + + L P+ Sbjct: 1178 ----DGDHEEKLLKAQQKWDDGQNQFGEGHDPHNQRLFHFPEDFSEARFGALAIHLLQPM 1233 Query: 1117 FR 1118 Sbjct: 1234 LS 1235 >UniRef50_Q3ASJ4 DNA helicase/exodeoxyribonuclease V, gamma subunit n=8 Tax=Chlorobiaceae RepID=Q3ASJ4_CHLCH Length = 1127 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 388/1141 (34%), Positives = 582/1141 (51%), Gaps = 82/1141 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L +Y SNR+++L + +V + L FE E+I+VQS GM +WL M L+ +FG+ AN Sbjct: 33 LHLYTSNRMEMLVDSLAEVVRQ-PLASVFEHEVIVVQSRGMQRWLSMELAGRFGVWANGR 91 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 +P P + + ++F ++LP + + AF K+ MSW++M LLP LLE +F LR Y DDSD Sbjct: 92 YPFPNAMVQELFKQLLPSVAQSDAFKKEVMSWRVMRLLPHLLEMAEFLPLRRYAADDSDG 151 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 KLFQLS K AD FDQY ++RPD LA WE +AWQ LW+ALVE Sbjct: 152 LKLFQLSEKIADTFDQYTLFRPDMLALWE--AGGGVAEGGEAWQPLLWRALVEGAG---- 205 Query: 182 PRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 HR L + L +++ LP R+ + GIS LP +L+ A+ + E+HL Sbjct: 206 --LHRGQLRELLFRQLSRSSSKISELPERITLFGISYLPQFHLELFAAVARLTEVHLFLL 263 Query: 242 NPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLA 301 +P + YWGDI +A+L + GNPLLA Sbjct: 264 SPTQEYWGDIVSRKAMARLS-------------------------EAEQALRSEGNPLLA 298 Query: 302 SWGKLGRDYIYLLSDLESS--QELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 S G++GRD+ ++ ++ + + D D+LLH +Q DIL L+ Sbjct: 299 SLGRIGRDFSEMVLEMSDEALDSQEFYDDPPEDSLLHALQWDILHLQGAGEMD------- 351 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 + R L P D S+ H CH+P REVEVL+D +L +LE P ++ RDIIVM DI+SYS Sbjct: 352 --ETPRLLQPHDRSVQIHACHTPLREVEVLYDAILGLLEAHPHISLRDIIVMTPDIESYS 409 Query: 420 PFIQAVFGSAPADRY-------LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 P+I VFG+A LP++I+DRR + A + LL+L SR + + Sbjct: 410 PYIATVFGTAREAGKEGKGVVALPFSIADRRMMHEGEIASALLKLLALHGSRLTASMLFD 469 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 L P ++ F E LR +R W+ SGIRWG+D+++ RE LPA H+WR GL R+L Sbjct: 470 FLASPPVSRAFGFDAEALRLIRGWIEGSGIRWGMDEEDRRERNLPAYRDHSWRAGLERLL 529 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LGYAM + +Q VLPY + +G AE++G A + L + R LE W Sbjct: 530 LGYAMPEEEQLFQGVLPYGDIAGSAAEMLGRFAEAVEALERFVSSSEPSRTLEAWRQQYA 589 Query: 593 DMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 L FF PD ++E + + + G+ A + + + + L RL+++ Sbjct: 590 MWLTTFFAPDEDSEREFATLATLGEELAEYGINAGFEENISPLVFFTWLRSRLEEQEQGL 649 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 F+ G + C ++PMRSIPF+VV L+GMNDG +PRQ FDL++++P++GDRS R++D Sbjct: 650 GFMTGGITFCAMLPMRSIPFRVVMLIGMNDGAFPRQSRAPSFDLITRQPQKGDRSLRNED 709 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLE+++SA++ LYISY+G+SI+DNSE PSVLV EL+D + ++ LP + + Sbjct: 710 RYLFLESILSARELLYISYVGQSIRDNSEIPPSVLVSELLDAVRRAFVLPNESS------ 763 Query: 773 EARVKAHLTCLHTRMPFDPQNY-QPGERQSYAREWLPA-------ASQAGKAHSEFVQPL 824 ++ HL H PF + + SY+ E A S L Sbjct: 764 ---IEQHLVVRHRLQPFHHDYFSEHSPLASYSSENYYALIASEQSLQAVPPIRSFISTAL 820 Query: 825 PFTLPE--TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQ 882 E TV LE L F+ +P F + RL + + D+EPF +E L RY++ Q Sbjct: 821 SEPTAEWRTVQLEQLLHFYDNPSAFFLEQRLGIKPEGLLLPLQDSEPFAVESLERYRLQQ 880 Query: 883 QLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP---GQ 939 +LL A + AE L F++ G LP GE+ + T QE+ A + Sbjct: 881 ELLEAQLRGQPAEALLPLFKSRGMLPPAQHGELLFATVMQEVDDFAATLRQHLAGEVALA 940 Query: 940 SMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASG--GNGESR 997 +E+D+ +I G L + + +LR+RP+ + V + W+EHL+ CA G + Sbjct: 941 PLEVDIEVGEFRIVGRLDGIWANAMLRYRPARMKVRDRFRWWIEHLLLCALQPTGYPLTT 1000 Query: 998 LFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAM 1057 L DGEW +PP+ + +L+ L++ Y +G+ PL P S A++ DA + Sbjct: 1001 HMLMSDGEWSYPPI--DNPHQHLTTLLQRYWQGLCEPLPFFPRSAYAFVLKGMDA--NHH 1056 Query: 1058 LDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 LD + A ++ N +GEG D QR + + +E + P+ Sbjct: 1057 LDVGKGIDAAYREWRDDTFTN--RKGEGSDSAIQRCFGAAANPFSDTFIELALELFTPMM 1114 Query: 1118 R 1118 Sbjct: 1115 E 1115 >UniRef50_A8ZX08 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX08_DESOH Length = 1085 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 358/1131 (31%), Positives = 545/1131 (48%), Gaps = 73/1131 (6%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 + + SNR+++L + LD+PF E I+VQS GM +WL M +++ GI A+ Sbjct: 1 MYFFTSNRMEMLSRAFCEALTAYPLDNPFARETIVVQSMGMKRWLSMEMARHTGICAHNR 60 Query: 62 FPLPASFIWDMFVRVLPEIPKESA-FNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F P +F+ M + S ++M+W + +L + + L+ YL D D Sbjct: 61 FLFPNAFLNQMLQTAFADAVPVSPDVGVEAMTWAVFPVLADVFAHPALSPLQAYLQ-DGD 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K +QL+++ AD FDQYLV+RPD L QWE G L + WQA LW+ L+ Sbjct: 120 VIKRYQLAARIADTFDQYLVFRPDMLLQWEAGAL--PADPHEKWQAHLWRLLISQGW--- 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 RA +++F+ +S LPSRV + GIS LP ++Q AL +E+ Sbjct: 175 --AEQRAERWKQFLSLAQSGALAGSTLPSRVSVFGISTLPRFHVQVFAALSAFLEVRFFV 232 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPCR+YWGDI E +A + + + GN LL Sbjct: 233 LNPCRHYWGDILS-----------------TYEKKQVETGADARDIPEAARHLETGNSLL 275 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS G + RD+ ++ D QE F +L +Q+DIL+L++ A Sbjct: 276 ASMGMVARDFFAMVED-HPHQETSLFAPAGETTMLACLQNDILDLKDAADQ--------- 325 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + +D D+S+ VCHSP REVE LHD LLAM E D L+P D++VM +++ Y+P Sbjct: 326 --ERVRVDGNDASMQISVCHSPMREVEALHDNLLAMFEADAGLSPEDVLVMAPNMEVYAP 383 Query: 421 FIQAVF--GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 +++AVF G+ + +PY ++DRR++ PV+ F+ L+ L +SRF VL +L+ Sbjct: 384 YVEAVFDAGADDGGQRVPYTVTDRRSKSGSPVVRTFLGLMDLWESRFGISAVLEILESAF 443 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM- 537 + RFDI E + QW+ ++G+RWG+D + +LP ++TW+ G+ ++LG AM Sbjct: 444 VRERFDIGEAEFFRISQWLVDAGVRWGLDGAFKTDRDLPEFSENTWKQGIDSLVLGCAMA 503 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 + + +LPYD G + + + L + R W + ++ + Sbjct: 504 GKGEILFDGLLPYDHMEGSDVDSLEKFLAFWHVLLRFYRQCGGAHAPGRWRQILTALVES 563 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F D EA + +I A+ A + V L ++R+ L +R + + F++G Sbjct: 564 MFAADPAVEADLQVITDALNALGESAAHAGFDGPVDLPVIREFLNRRFEGQAYGAPFISG 623 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 V C+++PMRSIPF V+CLLGMN YPRQ GFD++ + P+ GDRS+R+DDRYLFL Sbjct: 624 GVTFCSMLPMRSIPFAVICLLGMNVDDYPRQTFSPGFDMIRKHPRPGDRSKRNDDRYLFL 683 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 E L+SA+++LYISY+G ++DNS+R PSVLV EL DY+ + V Sbjct: 684 ETLLSARRRLYISYVGHDMRDNSDRPPSVLVGELCDYLRERFDAG---------PLTDVV 734 Query: 778 AHLTCLHTRMPFDPQNYQPG--ERQSYAREWLPAASQAGKAHSEFVQPLPFTL------- 828 +T H PF P + R SYA ++L AA Q L + Sbjct: 735 EKITTHHRLQPFHPDYFSSDTQARFSYAADYLAAARQLAGGRPGRPAALEPAVPVPDNAD 794 Query: 829 PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 P+T+ +E L RF+AHP R F RL + D + EPF + GL RY + ++L+ L Sbjct: 795 PQTIEVEDLCRFFAHPARYFLTQRLGLRVAETDRIPEEAEPFEVAGLERYDMARRLVERL 854 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD--RVIACRQPGQSMEIDLA 946 + +D A L RA+G LP+G G+ +E R + EI L Sbjct: 855 LAEDPAAPLENALRASGILPHGEPGKRLFERLKTGAAGFVAGVRAVTANGGLDRREIRLD 914 Query: 947 CNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEW 1006 NG + G L + R+R + + W+ HL + G S F +DG W Sbjct: 915 INGTTLCGTLDGIGEQEWFRFRYATARPGDFITNWIAHLAWSVDQGRAGSGRFAARDGWW 974 Query: 1007 RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQK 1066 F P+ + L L+ LIE YR+G PL P S + +T N +M Sbjct: 975 AFDPV--DNGLSILAALIEIYRQGRLRPLHFFPRSAFVYAETLQKKGNASM--------- 1023 Query: 1067 ARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 A + LQA+ GN V GE +D +Y + + S + PL Sbjct: 1024 ALDRALQAWRGNERVAGEKEDPFYALWFAG-DDPLDDEFETLSTAVVTPLL 1073 >UniRef50_Q65UM5 RecC protein n=9 Tax=Gammaproteobacteria RepID=Q65UM5_MANSM Length = 1167 Score = 946 bits (2444), Expect = 0.0, Method: Composition-based stats. Identities = 433/1173 (36%), Positives = 651/1173 (55%), Gaps = 92/1173 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 VYHSNRLDV + ++ +++ DDPF+ E+ILVQS GMAQWLQ+ +++K GIAAN+ Sbjct: 22 FTVYHSNRLDVQKDILIELMQLLPPDDPFQTEIILVQSPGMAQWLQLKIAEKKGIAANLK 81 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD--S 119 FP+PASFIW ++ VL ++ +++ FNK +M+W+LM L+PQ L F L +YL + S Sbjct: 82 FPMPASFIWQQYINVLEDVSQQTQFNKDAMTWRLMQLIPQFLSEPCFQALENYLKNSPYS 141 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL------------------VEGLGEA 161 +++KL+QL+ K ADLFDQYLVYRP+W+ WE + + Sbjct: 142 EQQKLYQLARKVADLFDQYLVYRPNWIHAWENNQPESIEQAIGTYQKDDNPELITQIKRD 201 Query: 162 QAWQAPLWKALVEYT-HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 WQ LW+AL++ G HRANL+Q FI+ L SA P LP R+FI GISALP Sbjct: 202 IKWQGILWRALIDEVQRGAGYKVRHRANLHQAFIDKLRSAK--PENLPQRIFIFGISALP 259 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 YL+ +A+ ++ +IHL F NP R YWGDI D +L KL TRQR +E+ L + Sbjct: 260 QSYLETFEAMSRYCDIHLFFNNPSREYWGDIVDDRFLQKLQTRQRFDHYENNHTALLSSA 319 Query: 281 ------ENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDL-----ESSQELDAFVDV 329 + + + + VGNPLLA WGKLGRD+ YLL+DL E ++E+ AFVD+ Sbjct: 320 TLTNMQQENYEFSPDNEKLLVGNPLLAGWGKLGRDFFYLLTDLMTRAEEHNREIIAFVDL 379 Query: 330 TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVL 389 LL +Q IL+L AV +N + D+S+T H CHS REVEVL Sbjct: 380 DDKTLLSQVQGHILDLIPMAVKKLNKPQ------------EDNSLTIHACHSVMREVEVL 427 Query: 390 HDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP-----------ADRYLPYA 438 HD LL++ E D LTP+DI+VMVADID Y+P+IQAVFG RY+P++ Sbjct: 428 HDYLLSLFELDKNLTPKDIVVMVADIDKYAPYIQAVFGQYQKDLQTNQFYQADKRYIPFS 487 Query: 439 ISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVN 498 ISD + +S ++ +F+ LL+L +S+F +E+VLA LD+P + RF I E L +R+WV Sbjct: 488 ISDNKLTESDVLIASFLMLLNLKESQFSAEEVLAYLDIPAIRMRFQIELEDLETIREWVK 547 Query: 499 ESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIA 558 SGIR+G++ L+ + W+ GL RMLLGYAM + G WQ L +D+S GL Sbjct: 548 NSGIRFGLEKRTDNSLK----NYNAWQSGLERMLLGYAMRAENGIWQDSLGFDDSHGLQG 603 Query: 559 ELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQA 618 +L G LA+ + +L W++ L EEW ++++ FFL + ++ A+ +++ Q Sbjct: 604 KLAGLLAAFIERLYQWQQFLRNPHSYEEWGQALLELVDHFFLENEQSLEAILYLKEIIQQ 663 Query: 619 IIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLL 678 + + + + + ++ + +A++L+ + S +FL G V+ CTL+PMR+IPFK VCLL Sbjct: 664 LHEQLDEVNFTSKLEIDVIAEVMAEQLNDKNTSLKFLVGKVSFCTLLPMRAIPFKAVCLL 723 Query: 679 GMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQD 738 GMNDG YPRQ P FDLM ++GDR RRDDDRYLFLEAL++A+ Y+SY+G+SI D Sbjct: 724 GMNDGEYPRQQTPNSFDLMQYHRQKGDRFRRDDDRYLFLEALLAAENYFYVSYVGQSIID 783 Query: 739 NSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE 798 N +R PSVLV +L+DY+ ++ N DE +++ L H+ F P N+ Sbjct: 784 NQQREPSVLVSQLLDYLAENLA-------NNDEEIEQIRTSLVQYHSMTIFSPDNFSAMH 836 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTLPE--TVPLETLQRFWAHPVRAFFQMRLQVN 856 R SYA+EWLP ++ +F Q + + E + + L +F HPV+ FF+ RL V Sbjct: 837 R-SYAKEWLPLVNRNQYPVPDFTQQISGEIDEVREIDILQLVQFVQHPVKFFFEKRLGVY 895 Query: 857 FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIF 916 F+ D +IP+TE F L+ L + I +L+ D+ + F R + G LPYG FG+I+ Sbjct: 896 FQQTDEQIPETENFTLDNLDNFLIKDELI--RFADDETDNYFERLKLEGILPYGHFGDIY 953 Query: 917 WETQCQEMQQLADRVIACR---QPGQSMEIDLACNG--VQITGWLPQVQP--DGLLRWRP 969 E +L +++ A Q +EI L V +TG L + ++WR Sbjct: 954 KRRLQNEAAELKNKISAYLSQEPAHQFVEITLDMGEQSVLLTGHLDHLYQPFAQRVKWRV 1013 Query: 970 SLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYRE 1029 + ++ WL +L+ + N L+ K+G F L AL L ++ Y + Sbjct: 1014 GEVKDKHIIENWLYYLLQLCTTDNVNPPLYYGKNGCIGFKTLEKSTALSILKLYVKAYLQ 1073 Query: 1030 GMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIW 1089 G+ +V +LK+C + + A ++ + E +DI+ Sbjct: 1074 GLKQVQIVPTYKIDDYLKSC-------QPETEFDTLSAFNNLRDLFKSSNNYTNEKEDIY 1126 Query: 1090 YQRLWRQLTPETMEA-----IVEQSQRFLLPLF 1117 + R+++Q T + I + ++ + + Sbjct: 1127 WTRVFQQATELNSDKEKLMQIQQTTRDWFGLML 1159 >UniRef50_A1S6U9 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6U9_SHEAM Length = 1163 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 409/1152 (35%), Positives = 612/1152 (53%), Gaps = 74/1152 (6%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M + SN ++ L + + + + E ILVQS GMA WL++ ++ GIAA + Sbjct: 1 MFTLVQSNHMERLAKRLADELNQAS-GNVLATEQILVQSPGMATWLRLEIAAHNGIAAAL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FPLP++FIW + +LP +PKE+AF K +M+WKLM LLP+L+E+ F LR YL+ DS Sbjct: 60 SFPLPSNFIWSLCYALLPGVPKENAFTKDAMTWKLMALLPRLIEKPHFEPLRDYLSSDS- 118 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV-----------EGLGEAQAWQAPLW 169 KLFQL+S+ AD+FDQYLVYRPDW+ WE G L + WQ LW Sbjct: 119 PLKLFQLASRVADIFDQYLVYRPDWIVTWELGENDLSPTGSPLTQGAALPDNCLWQPLLW 178 Query: 170 KALVEYTH-QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 +ALV+Y +LGQ WHRANL+Q + L + T LP R+F+ GIS+LPP L+ L Sbjct: 179 RALVQYNRDELGQSHWHRANLHQALVAALSNPNTDISALPRRLFVFGISSLPPQTLEVLY 238 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 ALG I + +L +PCR YWGDI D AKL + + H + Sbjct: 239 ALGSRIPVTMLSLSPCRQYWGDIVDSKLRAKLALKYKAHKMLPE---------------H 283 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ---ELDAFVDVTPDNLLHNIQSDILEL 345 + +VGNPLLA+ GK+GR+ + L+ L + + +LL +Q+DIL++ Sbjct: 284 WEETLEVGNPLLAANGKMGRELLDLVLSLPPEHFTLDDSGYETNDDSHLLGRLQNDILDM 343 Query: 346 ENR-AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT-L 403 E A ++ + ++ K LD D+S+ CHSP REVE LHD LL +L + L Sbjct: 344 EVAGAPLCADLARYQSNEGKFLLDEQDNSLVLRSCHSPLREVETLHDHLLGLLSDRQGRL 403 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 + ++I+VM+ D+ +Y+PFI AVF S + Y+PYAI+DR A + P++ F++LL + S Sbjct: 404 SAKNIVVMLPDVAAYAPFIDAVFASRRGEHYIPYAIADRGAVEESPLIHGFLTLLDINHS 463 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 RF ++L LL++P + A+F + EE L L W++E+G+RWG D + +L LPA +H+ Sbjct: 464 RFGLSEILGLLEIPAVMAKFKLDEEELSRLGNWLSEAGVRWGRDAQSREKLGLPAFDKHS 523 Query: 524 WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 W FG+ R+LLG+++ + LP+ G A+ VG L + L+ + A Sbjct: 524 WAFGIRRLLLGFSLGDEGDFYHGTLPFAGVEGQQAQCVGKLLDFIEHLDEFAARFAAADS 583 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQW----QAIIAEGLGAQYGDAVPLSLLRD 639 L + + F P E + + LI + +A+ + + L ++ Sbjct: 584 LTLKFAELSRLTDTLFAPLPEYQEELNLIRETLCDTQKALQSSASSESSLSDISLEVICQ 643 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 L +L R+ QRFLAG VN CTLMPMRSIPFKVVCLLGMN+G+YPR P+GFDLM++ Sbjct: 644 TLGSKLTDARVGQRFLAGSVNFCTLMPMRSIPFKVVCLLGMNEGIYPRVQHPVGFDLMAK 703 Query: 700 KP-KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 P +RGDRSRR DDRYLFLEAL+SA+++LYIS+IGRS +D+SER PS+LV EL+D Sbjct: 704 TPARRGDRSRRLDDRYLFLEALLSAREQLYISFIGRSERDDSERLPSMLVSELLDCCE-- 761 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY--QPGERQSYAREWLPAASQAGKA 816 L+ S+ ++ L PFD + Y S+A +W P ++ K Sbjct: 762 --------LSAYVSQGKLVNRLVKQQPLQPFDHRLYLTNQDITASFAAQWCPQETRPPKP 813 Query: 817 HSE-FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGL 875 + + + + + L +L RF+ P R F Q RL+++ + D+EPF ++ L Sbjct: 814 FIDAVLDEVDEDEHKVLELASLIRFYRDPARFFCQRRLRLDLSHRLDALDDSEPFDVDAL 873 Query: 876 SRYQINQQLLNALVEQDDA------ERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 RYQ+ ++LNA +E D+ + L R AG LP F ++ + + +++ + D Sbjct: 874 GRYQLQDKMLNAALEADEIRQQLAVDTLCDRLAGAGVLPMAPFDKLLFASYQRDLAPILD 933 Query: 930 RVIACRQPG--QSMEIDLACN-GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV 986 R QS+ I L N G ++ G + +V GLL RP + L+L HL Sbjct: 934 RCRFIMGETEGQSLRISLVLNQGHKLVGTIDKVFAKGLLVARPGTAKAKDVLALYLRHLC 993 Query: 987 YCASGGNGESRLFLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAW 1045 CASG S FL G + F PL + AL L I Y E + P ++P + Sbjct: 994 LCASGYRQSS--FLLDVGNFHAFLPLTPDNALTSLEDFISHYFESVRTPSPLIPALAMTY 1051 Query: 1046 LKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAI 1105 ++ + ++ +L + TK+ + GE + +RL+ A Sbjct: 1052 IEALAEG-----ASEEESLAELSTKW-----DDGNGMGEIAEPHNERLFEFPASFATPAF 1101 Query: 1106 VEQSQRFLLPLF 1117 ++R PL Sbjct: 1102 TVVAERLWKPLL 1113 >UniRef50_Q15V11 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V11_PSEA6 Length = 1166 Score = 941 bits (2431), Expect = 0.0, Method: Composition-based stats. Identities = 408/1193 (34%), Positives = 599/1193 (50%), Gaps = 108/1193 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIV--ERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 ML + SN+++ L A + + + LDD F P+++LVQS GMAQWL++ ++Q GI+A Sbjct: 1 MLHLVQSNKMESLAAYLIGWLGESKSSLDDIFSPDVVLVQSPGMAQWLKIEIAQALGISA 60 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 NIDFPLP+S+IW ++ + ++P++SAF K +M+WKLM++LP++ +R +F + YL DD Sbjct: 61 NIDFPLPSSYIWQLYKGHVNDLPEQSAFTKDNMTWKLMSILPEMSDRTEFASIAQYL-DD 119 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL--VEGLGEAQAWQAPLWKALVEYT 176 KL+QL K AD++DQYLVYRP+W+ WE G + AQ WQ LW+ALVEY Sbjct: 120 QQPLKLYQLCQKIADIYDQYLVYRPEWILAWEQGENNVADTDVSAQPWQPILWRALVEYA 179 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 +L + +HRANL+ R + LE + L +F+ G+SA+P L+ AL K ++ Sbjct: 180 KELDESPYHRANLHTRLMAELEDTKSSKDELKP-LFVFGLSAMPVQQLEIFSALAKSRDV 238 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 + + NP +YWGDI D + + + L + L D VG Sbjct: 239 IIFWFNPSAHYWGDIVDNKQVLQAKLQ---------SLLAQASEDAQSGLSGMDDYLLVG 289 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 NPLLASWGK GRDY ++ LE DAF++ P++LL ++Q ++L L +R Sbjct: 290 NPLLASWGKQGRDYQDMILGLEVELH-DAFIEQEPESLLEHMQHEVLALTHRGAIEPLPA 348 Query: 357 E----FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV 412 + K PL D ++ H CHS RE+EVLHD+LL + + P L P D+IVM+ Sbjct: 349 QELLTNGEEYPKIPLAEDDMTLQVHACHSAVRELEVLHDQLLHLFADHPELHPGDVIVMM 408 Query: 413 ADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 D+ SY+P I VFG ++PYAISDR A+Q P+L +FI L+SL SR DVLA Sbjct: 409 PDVASYAPIIDGVFGGTDKALHIPYAISDRNAQQESPLLNSFIQLMSLHQSRIGLSDVLA 468 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 L +VP + +FDIT E L W+ ++G+RWG D + LP Q+TW FGL R+L Sbjct: 469 LCEVPAVQRKFDITPEEFDLLSVWLADAGVRWGWDGQDKTRWALPNEPQNTWLFGLQRLL 528 Query: 533 LGYAMESA---QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 GYAM + + PY+ G +G +L L + Sbjct: 529 AGYAMGGESMFDDAHEPIAPYEHIEGQHVVALGKFYLFSRELGNALAFCQSAASLHAKIK 588 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 ++ +LPD + + + + Q + + Q+ + + EL Q L + Sbjct: 589 GALSLIEQLYLPDDDDQTYVLQLRQSLEQMT--VHEHQFSGEIVHDVFLAELEQSLSSKG 646 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRSR 708 + QRFLAG VN CTLMPMRS+PFKVVCLLG+NDG YPRQ+ P+GFDLM K +RGDRSR Sbjct: 647 VGQRFLAGYVNFCTLMPMRSVPFKVVCLLGLNDGDYPRQVVPVGFDLMRIGKGRRGDRSR 706 Query: 709 RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN 768 R DDRYLFLEA++SA+++LY+S+ G S +DNS R PS+L+ EL++Y Q+ L GDE+L Sbjct: 707 RLDDRYLFLEAILSARKRLYLSFQGFSAKDNSPRSPSILLSELLEYTQQTFCLAGDESLE 766 Query: 769 CDESEARVKAHLTCLHTRMPFDPQNYQ-----------PGERQSYAREWLPAASQA---- 813 + H+ H PF+P + P S+ WL A Q Sbjct: 767 TKTCADNLAKHIYHEHALQPFNPVYFATKRDAHEEEPLPSAMASFQTPWLALAQQLTDGS 826 Query: 814 --GKAHSEFVQPLPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD 866 +F F+LPE V L+ L F+++P +AFF R Q D Sbjct: 827 VHSDKEVDFCPAPLFSLPELAQVTEVELDELLIFFSNPAKAFFSQRWQTRLTRVYDVQSD 886 Query: 867 TEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQ 926 EPF L+ LSRY +N++ + + R RA G LP G +I + ++ + Sbjct: 887 DEPFELDALSRYVLNERFVTTQQQ-----DWTTRLRAEGKLPTGNIADISLQPIRKQSRA 941 Query: 927 LADRVIACRQ------PGQSMEIDLAC-------------------------------NG 949 L D ++A P E++ Sbjct: 942 LIDALVALIGGPLDEVPPTRAEVNFELSYLLDISPVPASELNANTNSSTQNSVSATSTQR 1001 Query: 950 VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES----RLFLRKDGE 1005 +QITGW+ + L+ WRP + +QLWL L CA+G + + + Sbjct: 1002 IQITGWVDNLYGGNLVLWRPGKVKGNNVLQLWLTWLALCANGSVAKHQRAYYIGVEDKEP 1061 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 + + ++A L+ I +R G L P++ WL +A Sbjct: 1062 FSIGAVDKDEAKTQLAIFIRYWRLGQLQVLHFYPKTAYEWLSVGDEA------------- 1108 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 KA K A+ G+ +GEG++ +R+ L + A E S PLF Sbjct: 1109 KALMKAKNAFYGSYFAKGEGEEPHIRRVCPDLN-QHFCAFSEVSHALFDPLFD 1160 >UniRef50_Q9CM76 RecC n=1 Tax=Pasteurella multocida RepID=Q9CM76_PASMU Length = 1124 Score = 939 bits (2426), Expect = 0.0, Method: Composition-based stats. Identities = 436/1163 (37%), Positives = 646/1163 (55%), Gaps = 88/1163 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y+SN LDV + ++ +++ LDDPF+ ++ILVQS GMAQWLQ ++++ GI++NI Sbjct: 1 MFTIYYSNDLDVQKNILLTLMQDT-LDDPFQSDVILVQSPGMAQWLQWKIAEQQGISSNI 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD-- 118 FP+PASFIW +V LP ++S FNK SM+W+LM L+P+ LE+ +F LRHYL+ Sbjct: 60 KFPMPASFIWQQYVDNLPNTEEQSQFNKASMTWRLMRLIPEHLEQVEFQSLRHYLSSSHQ 119 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA--------------- 163 ++++KL+QL+ + ADLFDQYLVYRP+W+A WE G + + + Sbjct: 120 TEQQKLYQLAYQIADLFDQYLVYRPEWIACWERGDEATMMAQLERKLKDTRLPIGNAFSQ 179 Query: 164 ---WQAPLWKALVEYT--HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA 218 WQA LW+ALV HRA L +F++ L++ P LP R+FI GISA Sbjct: 180 DVKWQAILWRALVADILAESGQTVPLHRAYLQTQFLQFLQTQ--HPVNLPPRLFIFGISA 237 Query: 219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFR 278 LP YL+ A+ ++ E+HL FTN CR YWGD+ DP ++ +L QR +P+F Sbjct: 238 LPKGYLEIFYAMSQYCEVHLFFTNGCREYWGDLIDPRFMQRLSQMQRTGYHTALPIPVFH 297 Query: 279 DSENAGQLFNSDGEQD-VGNPLLASWGKLGRDYIYLLSDLES---SQELDAFVDVTPDNL 334 ++NA + D E G+PLL+SWGKLGRD++YLL++LE + +DA+ ++T +L Sbjct: 298 HTDNARFESSYDHEHLFEGHPLLSSWGKLGRDFLYLLTELEQLEGVRSIDAYTELTSQHL 357 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 L +Q+ IL LE + L D S+TFH CHSP REVEVLHD LL Sbjct: 358 LSQVQARILHLEGKQGLN--------------LAENDRSLTFHSCHSPMREVEVLHDYLL 403 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPA--DRYLPYAISDRRARQSHPVLE 452 + ++D TLTP+DI+VMVADID Y+P+IQAVFG R +P++ISD R ++ ++ Sbjct: 404 HLFQQDSTLTPKDIVVMVADIDKYTPYIQAVFGQYNQVAQRQIPFSISDNRLSENDVLIA 463 Query: 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVR 512 +FI LL+L +S+F +ED+LALLD+P + RF I L +R WV +GIR+G++ + Sbjct: 464 SFIHLLALKESQFSAEDILALLDIPAIRNRFQIELMELEQIRHWVAHAGIRFGVEKEQ-- 521 Query: 513 ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 ++W+ GL RMLLGYAM G WQ L +D GL +L G LA + +L+ Sbjct: 522 --GKQEKNTNSWQAGLERMLLGYAMREENGIWQGNLGFDPCYGLQGQLAGRLAEFIARLS 579 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 W + L +P+E+W +L FF D + I++ ++ + + + Sbjct: 580 AWYQFLQTPQPIEKWQQHLLTLLTDFFAEDETNITTLRYIQETIVQMVTDIQQTHFDQPL 639 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 ++ D L+ L+ + S +FLAG VN CTL+PMRSIPFKVVCLLGMN+G YPRQ P Sbjct: 640 SSEVVSDVLSALLEDDPNSMKFLAGKVNFCTLLPMRSIPFKVVCLLGMNEGDYPRQQTPN 699 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FDLM ++ DR RRDDD YLFLEAL+SAQ+ Y+S++GRSI DN + PSVLV +LI Sbjct: 700 SFDLMQYDRRKADRFRRDDDCYLFLEALLSAQEAFYVSFVGRSIVDNQSKPPSVLVSQLI 759 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ 812 DY+ + A L H F P N++ GE S+A +WLP A+ Sbjct: 760 DYLVDKLSSAETQDWQ---------ARLIEQHPMTAFSPDNFR-GENGSFANQWLPLANI 809 Query: 813 AGKAHSEFVQPLPFT---LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 + ++FVQP+ T + L L F HPV FF+ L V+F ++ I D+E Sbjct: 810 QKQERADFVQPIAQTVLAEDREIVLADLIAFIQHPVAFFFKRHLGVSFAKQEERIEDSEN 869 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L+GL RYQIN+QLL +++ + + + + G LP G F +IF Q +++ L Sbjct: 870 FTLDGLMRYQINEQLL--YCDEEKSAEVLAQLKVKGMLPRGEFAQIFALQQQEDIAALKT 927 Query: 930 RVI-ACRQPGQSMEIDLAC----NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEH 984 V +Q +E+DL +++ G L Q+ + WR + ++ W+ + Sbjct: 928 TVADYLKQEAHVVEVDLTIPSGYGDIRLIGLLDQLYAQRRVMWRVGQIQEKHLIENWVYY 987 Query: 985 LVYCASGGNGESRLFLRKDGEWRFPPLAAEQ-------ALHYLSQLIEGYREGMSAPLLV 1037 L+ CA E ++ K+G+ F L A + AL L +E Y +G +V Sbjct: 988 LIQCAMLAQHEPPIYYGKNGQATFQALCASESLSVKEIALAQLQIYVESYLQGYQQMQMV 1047 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ- 1096 ++ +L+ + + RT EG+ G DI++QR+ Q Sbjct: 1048 PMKNIQRYLEAY-------GHTETPDFEMIRTLLHHLAEGDYASDG---DIYWQRVLAQQ 1097 Query: 1097 -LTPETMEAIVEQSQRFLLPLFR 1118 L E + AI E++ + +F Sbjct: 1098 VLDEERLNAIGERTTSWFKLMFE 1120 >UniRef50_Q3B473 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B473_PELLD Length = 1075 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 373/1139 (32%), Positives = 574/1139 (50%), Gaps = 86/1139 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 ++ SNR +VL A + PF E+++VQS GM +WL M L+++ G+ A Sbjct: 3 FNIHTSNRTEVLAADLASYFAASPPASPFSREVVVVQSRGMQRWLSMELARRLGVWAGAR 62 Query: 62 FPLPASFIWDMFVRVLPEIPKESA-FNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +P P + + ++F V P E+ ++ + +W +M LLP +L E F +L YL+ S Sbjct: 63 YPFPNAVVSELFRHVFPSKEDEAGRYDPECTTWSIMRLLPSMLRDEPFAILSRYLSGSSA 122 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 +L+QL++K AD FDQY ++RP+ LA WE G G WQ+ LW+ L Sbjct: 123 PLRLYQLATKIADSFDQYTLFRPEMLALWEAGE---GTAGPDGWQSILWRRLNAELGG-- 177 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HR L + F + T P R+ + GIS LP +L L A+ +H E++L Sbjct: 178 ---RHRGILKEAFC---RNGTLPDAVFPRRIALFGISYLPQFHLDILSAIARHREVNLFV 231 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +P YWGDI L+ + +R GNPLL Sbjct: 232 LSPTEEYWGDIVSRRTLSGMTHAER-------------------------ELHAEGNPLL 266 Query: 301 ASWGKLGRDYIYLLSDL--ESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 AS G++GRD+ ++ ++ E ++ ++ ++D D LLH IQSDIL L Sbjct: 267 ASLGRIGRDFSDMVLEIPDEQNRTVERYIDPRRDTLLHAIQSDILTLSGTGEG------- 319 Query: 359 SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 + D S+ H CHSPQREVEVLHDR+L MLE P L PRDI+VM DI++Y Sbjct: 320 ----ERPVCSATDRSVQVHACHSPQREVEVLHDRMLDMLESIPGLAPRDIVVMAPDIETY 375 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 SPFI AVFGSA A+ +P++++DRR V A + LL L SR + ++ LL P Sbjct: 376 SPFITAVFGSA-AEGRIPFSVADRRLMNEGEVSSAVLRLLELHRSRASAPELFDLLSSPP 434 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 +A RF + L+ +R W+ ++ IRWGID++ +LPA Q+TWR G+ R+LLGYAM+ Sbjct: 435 VARRFGLDVSALQSIRGWIVDTRIRWGIDEEERSMNQLPAFRQNTWRAGIDRLLLGYAMD 494 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 S + + +LP++ G AE +G A + ++ +R GL++ R LEEW ML F Sbjct: 495 SRESCCEGILPFEGVDGGAAETIGLFADFIDAVDRFRHGLSKTRTLEEWRVFFISMLEHF 554 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 L + ++ ++ + + + Y D VP ++ L RL Q+ F+ G Sbjct: 555 MLTEEDSTREFLAVQDLMERMGEISRLSAYHDEVPPEVVIAWLQGRLQQKEQGLGFMTGG 614 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 V C+++PMRS+PF+VV +LGM+DG +PRQ P GFDL+S+ PKR DRS R +DRYLFLE Sbjct: 615 VTFCSMLPMRSVPFRVVVMLGMDDGAFPRQQHPPGFDLISRHPKRADRSVRAEDRYLFLE 674 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 ++SA+ LYIS++GRS +D+S PSVLV EL D I + LP R + Sbjct: 675 TILSARDVLYISFVGRSRKDSSPIPPSVLVSELFDAIDRGFLLPE---------GVRAEE 725 Query: 779 HLTCLHTRMPFDPQNYQPGE-RQSYAREWLPAASQAGKAHSEF-----VQPLPFTLPETV 832 L H PF P + G SY+ E ++ A E P P + V Sbjct: 726 MLLFSHPLQPFSPACFSAGGPLFSYSEENFLPHAEHSGAGPEPLFMDSPLPEPGEPLQRV 785 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 L L F+ +P F + RL + + + + EPF L+GL Y+I +L A++ + Sbjct: 786 ELMDLIGFYDNPSAFFLRYRLGLQPAGQVLPLDEREPFGLDGLDAYRIRAELAEAMLLEG 845 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL---ADRVIACRQPGQSMEIDLACNG 949 D R+ RFRA G LP G+ +++ ++ + R+ P +++ +L Sbjct: 846 DIGRVQDRFRAEGVLPPALSGDRLYQSLLEDAARFVRSVQRLAPISLPLPALDFELPLGP 905 Query: 950 VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG--ESRLFLRKDGEWR 1007 + ++G L ++ G L RP+ + + M+ W+ HLV C+ G L + +G +R Sbjct: 906 MILSGRLEGLRSSGQLFARPASMKARERMRSWIFHLVLCSLRPEGVDPETLLIMNNGAYR 965 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 E L +L+E YR G PL PE+ +W + D L+ A Sbjct: 966 LR--QPEAPGLLLQELLERYRSGQRMPLAYFPETSFSWEGKLEKGEGD-------ALKAA 1016 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEA----IVEQSQRFLLPLFRFNQS 1122 R + + G RGEGDD ++R + + ++ A E + + P+ + +++ Sbjct: 1017 RGAWRTSGFGG--ARGEGDDPAFRRCFGEAGFDSEAAGPLYFRELAAALVRPVLQHSEA 1073 >UniRef50_Q12LP5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Bacteria RepID=Q12LP5_SHEDO Length = 1375 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 404/1324 (30%), Positives = 614/1324 (46%), Gaps = 234/1324 (17%) Query: 1 MLRVYHSNRLDVLEALMEFIVERE-RLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN+++VL + ++ + E +LVQS GM+ WL++ +++ GIAA Sbjct: 1 MLTLIQSNQMEVLSEQLAKLLATPLDETNLLASEHVLVQSPGMSTWLRLEVARHNGIAAA 60 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD- 118 ++FPLP+SFIW + +LP++PK++AF K +M+WKLM LLP+LL+ DF L +YLT + Sbjct: 61 LEFPLPSSFIWQLCHTLLPDVPKDNAFTKPAMTWKLMDLLPRLLDDADFAPLANYLTTEL 120 Query: 119 -------------------------------------SDKRKLFQLSSKAADLFDQYLVY 141 D K +QL S+ AD+FDQYLVY Sbjct: 121 ATELAPELAPELATEIKPDQAAAAPDSRSQAIVLSAAQDAIKRYQLCSRIADIFDQYLVY 180 Query: 142 RPDWLAQWETGHLVE------GLGEAQAWQAPLWKALVEYTH-QLGQPRWHRANLYQRFI 194 RP+W+ WE + L ++Q WQ LW+AL++Y +LG +HRANL++ + Sbjct: 181 RPEWILAWEQNKPLTSLDNKLKLDDSQLWQPKLWRALIDYNRDELGASPYHRANLHESLL 240 Query: 195 ETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDP 254 E L + LP R+F+ GIS++PP L+ L L I + +L +PC +YWGDI DP Sbjct: 241 EALADEQSSVANLPQRLFVFGISSMPPQTLEILHQLAGRIPVVMLALSPCEHYWGDIIDP 300 Query: 255 AYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLL 314 A++ + ++ + + +VGNPLLA+ GKLGR+ + L+ Sbjct: 301 KTRARMALQY---------------ADKKQLAQDWESSLEVGNPLLANNGKLGRELLDLM 345 Query: 315 SDLESSQEL---DAFVDV-------------------TPDNLLHNIQSDILELENRAV-A 351 L S D +V LLH +Q DIL++E V Sbjct: 346 LALPSEHTDFGYDCYVKPWDINLHSDDENDAVPVNTPQNAKLLHGVQYDILQMETLGVSL 405 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 G + ++ N+R L P D SIT CHSP REVE LH+ LLAML P L P+DI+VM Sbjct: 406 GPDAALYNNIPNRRLLQPDDDSITIRTCHSPLREVETLHNHLLAMLSRCPQLHPKDIVVM 465 Query: 412 VADIDSYSPFIQAVFGSAPADR------------YLPYAISDRRARQSHPVLEAFISLLS 459 + D+ +Y+P+I AVFG+A A+ Y+PYAI+DR A P++ +F+SLL+ Sbjct: 466 MPDVAAYAPYIDAVFGTANAEASGIDGARQQGNSYIPYAIADRGAAAESPLINSFLSLLN 525 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + SRF +++ +L+VP + RF ++ + L +R W++E+ +RWG D+ + L LPA Sbjct: 526 INQSRFALTEIMGILEVPAILRRFKLSGDELSQIRLWLDEANVRWGRDEHSRAALNLPAF 585 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 Q++W FG+ R++LGYA +Q L G A+ +G L + L L+ +R A Sbjct: 586 EQNSWAFGIRRLILGYAFHDGAPLYQDTLLVPGLEGQSAQALGKLMNFLETLDDYRALFA 645 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 L + +L F D + + I + + E GA + + + +L+ Sbjct: 646 APCTTSSRLFELQTLLQDIFEADDDEREEIQAINEAIAKLSEELNGAGHQGMLDIEVLKI 705 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 QRL + R+ QR+LAG VN CTLMPMRSIPF +VCLLGMNDG YPR P+GFDLM+ Sbjct: 706 WFNQRLSESRVGQRYLAGSVNFCTLMPMRSIPFNMVCLLGMNDGDYPRVQHPVGFDLMAH 765 Query: 700 KP-KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 K+GDRSRR DDRYLFLEAL+SA+++LYISYIG+S +DNSER PS+LV ELI+Y Sbjct: 766 FGAKKGDRSRRADDRYLFLEALLSAREQLYISYIGQSERDNSERIPSMLVSELIEYCQLC 825 Query: 759 HYLPGDEALNCDESEA-----------RVKAHLTCLHTRMPFDPQNYQPGE------RQS 801 + P + E + A L PFDP+ ++ + +QS Sbjct: 826 YLTPEMKEQLSKLDEEQILALSKPCDDALLARLIQAQPLQPFDPKLFRDNQALGIALQQS 885 Query: 802 YAREWLPAASQAGKAHSEFV-----------------------------QPLPFTL---- 828 Y +W P ++ A K + Q LP ++ Sbjct: 886 YHSQWCPPSTPANKTTTAPASAAASGSASAETSVNTWVMNSSGRFLGPNQSLPQSILADS 945 Query: 829 ------------------PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPF 870 + L L RF+ +P + FF L+V+ + + EPF Sbjct: 946 LWPQWHSDLEERAVFAATDAELELSALLRFFRNPSQFFFNRSLKVDLSLDIQADDNDEPF 1005 Query: 871 ILEGLSRYQINQQLLNALV----------------EQDDAERLFRRFRAAGDLPYGAFGE 914 L L RY + +LL+ ++ ++ L + +AAG LP F E Sbjct: 1006 SLNALERYLLQAKLLDKILAPDLDTSDLDNNGDDRKKTPEASLTQALKAAGSLPMAPFDE 1065 Query: 915 IFWETQCQEMQQLADRVIACRQP-GQSMEIDLACN------------------------- 948 + ++M L RV R + ++L Sbjct: 1066 LLLSQYQRDMAPLIGRVQFMRGEQCEPRSLNLELEFSFSPGQILANSLELSEISLEPALI 1125 Query: 949 --------------GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG 994 + + G + + P GL+ +RP ++++L HL ASG Sbjct: 1126 NSPELAHNAAQAPLKLTLLGRIDDILPKGLINYRPGAAHGRDLVRVYLRHLCLNASGQQQ 1185 Query: 995 ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQN 1054 S L F P+ A L I Y +G + PL +P + A+++ Sbjct: 1186 TSYLLDM-AQFHSFAPITPAHATAQLKAFILAYIQGQTRPLCFMPRTAFAYVEA------ 1238 Query: 1055 DAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLL 1114 + Q+ + + GEG + RL+R T + L Sbjct: 1239 ------PGSHQEKLIAAQKLWRDEQNQLGEGFEPHNHRLFRFPDDFTESGFGAIATTLLS 1292 Query: 1115 PLFR 1118 P+ Sbjct: 1293 PMLS 1296 >UniRef50_C0N788 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N788_9GAMM Length = 1069 Score = 910 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 374/1138 (32%), Positives = 584/1138 (51%), Gaps = 90/1138 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++ +SN L A + + E L P +PE I+VQS +++WL + L++ IAAN+ Sbjct: 1 MLKIVYSNDTGQLAAWLADHLLSEPLP-PLQPETIIVQSNELSRWLSLRLAKTHQIAANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +FP P+++IW +F ++ P++P +S + K+ M+W+L LLPQ + F + YL D D Sbjct: 60 EFPFPSAYIWQLFRQLWPDVPLQSPYAKEPMAWRLFELLPQAASLDGFEAVAAYLGGDDD 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K ++L+ K AD FDQYL+YRPDW+ QWE G +WQ LW+ L Sbjct: 120 DLKRYELAEKIADTFDQYLMYRPDWVQQWEQGQAT-------SWQGKLWQMLTAD----D 168 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HRA L Q+ + L + PPGLP+R+ I GISALPPVYL+ + L ++++I L + Sbjct: 169 PQPMHRARLLQQLHDLLSHSDVVPPGLPNRISIFGISALPPVYLEIVNLLARYVDITLYY 228 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +P +YWGDI DP + L ++ E + G+PLL Sbjct: 229 LSPSEHYWGDIIDPKKQQRQQL----------------------LLDFNEDEIEPGHPLL 266 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 AS GK G+ + L + + FV+ + +L ++ DI E+ Sbjct: 267 ASLGKQGQAFFRQLQE-TQHLDDSCFVEPVGETMLSQLKRDIFEM--------------A 311 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 +D D+SI+ VCHSP RE+E+LHD+LLAM E++PTLTP DI+VM DID Y+P Sbjct: 312 TDQPSVAVKDDTSISIQVCHSPMREMEILHDQLLAMFEQNPTLTPTDIVVMTPDIDVYAP 371 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I+AVF +A R++P++I+D +Q ++ F S L LP SRF E +LA+L+ P + Sbjct: 372 WIEAVFATADKSRFIPFSIADSSGQQESLLITTFYSFLQLPQSRFDVESILAMLECPAVQ 431 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 RF + + L ++R+W ++ RWG+D ++ L+LP T +TWR GL R+LLGYAM Sbjct: 432 RRFGLDDAALNWIREWCQQTRTRWGLDANDKAALDLPDTESNTWRAGLDRLLLGYAMPLN 491 Query: 541 QG-----EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 + + L D SG A +V L + L+ WR+ LA++ + +W L Sbjct: 492 EPDQPWRLFDGQLAMDGISGERAHIVAALCDFIDALDAWRQRLARQNTIADWQKQLNQCL 551 Query: 596 NAFF----LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 +AFF L + + E +T I Q + + + A + + L+ L L + Sbjct: 552 DAFFNTEGLEETQFETEITAIRTQLERLSSGAKQADFEQTIGADLILSWLQSHLQPVDNA 611 Query: 652 QRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDD 711 RFL + C ++PMRSIPF VVCL+GMND V+PR+ + FDL++ + GDRSRRDD Sbjct: 612 HRFLGHGITFCGMVPMRSIPFDVVCLVGMNDEVFPRRQPSVSFDLLAHDHREGDRSRRDD 671 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE 771 DRYLFLEAL+SAQQ Y+SY+G S+ DNSE PSVLV +L D + + E Sbjct: 672 DRYLFLEALLSAQQTFYMSYVGASVVDNSEIPPSVLVSDLQDLLAERFET---------E 722 Query: 772 SEARVKAHLTCLHTRMPFDPQNYQ--PGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 + A + + H F + + + S+ P + + + F PLP Sbjct: 723 TTATILEQIITKHPLQAFSRRYFDGNNDQLFSFNASHCPT-QEMLEQANWFETPLPEADD 781 Query: 830 E--TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 V + L RF+AHP + + RL + ++ + EPF L+GL +Q+ Q +++ Sbjct: 782 SWRQVTRDQLIRFFAHPTKFILRERLGIRLELDEEALESREPFALDGLESWQLRQWIVDE 841 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP--GQSMEIDL 945 + Q E L +A G LP G G+ ++E + Q + +++ ++ IDL Sbjct: 842 SLSQHSDEGLKPVVQATGMLPQGRLGDAWFEKESQTVDDFIEKLRPVLPEQGWITLAIDL 901 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES--RLFLRKD 1003 +G QI G LPQ GLLR+R + + W++HL+ G + + +D Sbjct: 902 NIDGFQINGQLPQFSQQGLLRYRLAKKKGKDLIAAWIDHLILNILKPEGVTLQTHLILQD 961 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 E+ F P+ L+ L++ Y +G PL ++ A+ T + + Sbjct: 962 AEYVFLPVTGPT--QILANLLKLYWQGCHLPLKFFDQASLAFAATYFGKKP--------- 1010 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 ++ K + + GEGDD +Y+RL+ Q P + E + + PL + Q Sbjct: 1011 -EQKFKKAHDKWSASGDFAGEGDDNYYRRLYSQ--PPLDDEFAELAIQVYEPLQQHLQ 1065 >UniRef50_Q7NQR0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Chromobacterium group RepID=Q7NQR0_CHRVO Length = 1065 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 380/1128 (33%), Positives = 570/1128 (50%), Gaps = 80/1128 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNRL+ L L + + L DPF E ++VQS GM +W+ + +++K GIAANI Sbjct: 1 MLFLYQSNRLEQLGELFCGMTQAMPLADPFAAETVIVQSRGMGRWITLDVARKAGIAANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DF LPA+F W + +V+P++P++SAF + ++W+L+ LLP L F + HYL Sbjct: 61 DFALPAAFAWRLMQKVMPDLPRKSAFVPEVLAWRLLALLPSLSGEP-FGPVLHYLEGG-- 117 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + F+L+ K AD+FDQYLV+RPDW+ WE G L+ GLGE +AWQA LW+ L E Sbjct: 118 EAAAFELAGKIADIFDQYLVFRPDWIRAWEAGELL-GLGEDEAWQASLWRRLAE-----S 171 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 P HR + +F L+ P LP RV + GI++L P+YL ++ L + ++ L Sbjct: 172 DPGRHRVRMLDQFFADLK-----PEHLPPRVTLFGIASLAPMYLALVKRLSQLTDVCLFT 226 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPC YWGDI D L KL D G+PLL Sbjct: 227 LNPCEAYWGDIVDARRLLKLRQ-------------------------AGDLFATQGHPLL 261 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 +S GK GRD+ L+++ F D LL +Q DIL+L + + Sbjct: 262 SSLGKQGRDFFELIAEDAELDAKPLFAAPKGDGLLARLQRDILQLNDPSQL--------- 312 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 RP DP D+SI H CH P RE+E L DRLLAM DP L+P D+ V+ DI++Y+P Sbjct: 313 ---PRPFDPADASIEVHACHGPMRELEALKDRLLAMFAADPKLSPADVAVLTPDINAYAP 369 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I AVFG +PY+I+DRR + P+L F ++L L DSRF +++VLAL D P L Sbjct: 370 YIDAVFGRRDDAPNIPYSIADRRVEREQPLLSTFAAVLKLADSRFAADEVLALFDCPALL 429 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME-- 538 ARFD+ + L +++ WV ++GIRWG D + L LPA +TWR+GL R+LLG + Sbjct: 430 ARFDLADADLAFIQDWVRDAGIRWGRDAAHKASLGLPAEAAYTWRWGLDRLLLGTVLPPA 489 Query: 539 ---SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 G + +LPY + G + E + A L+ +Q ++W Sbjct: 490 LAGDDAGLFAGLLPYTAAQGQLGETLARFAGFYDALDALADAWSQPAAPQQWAQRFHQAC 549 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 + FL + + EAA+ L+ + + A +G V L++ RD L ++L +Q FL Sbjct: 550 DRLFLAEGDDEAALELLREALAELAENADLAGFGQPVGLAVARDWLLRKLSSSS-AQGFL 608 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL 715 +G V C ++PMRSIPF+ +CL+GMNDG YPR P+ FDL+++ P+RGDRSRR DDRYL Sbjct: 609 SGGVTFCAMVPMRSIPFQALCLIGMNDGAYPRDERPVSFDLVARNPRRGDRSRRFDDRYL 668 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 FLEA++SA+ +LY+SY+G+S + PS LV EL+D + Sbjct: 669 FLEAILSARGRLYLSYVGQSARSGEPLPPSPLVSELLDTLSAMC-------------GED 715 Query: 776 VKAHLTCLHTRMPFDPQNYQPGE--RQSYAREWLPAASQAGKAHSEFVQPLPFTLPET-V 832 + A LT H PF P+ + G+ S+ + A + + FV PLP T V Sbjct: 716 MAARLTLRHPLQPFSPKAFDGGDARLASFEPAFAAALAAPPAEPAPFVAPLPDEGAATVV 775 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 L RFW +P RA+ RL + P EPF + + + + +QL+ A++ Sbjct: 776 NLHDFIRFWQNPARAWLADRLALRVAYSGDAQPAREPFAMARDASHALRRQLVEAMLHGK 835 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR--QPGQSMEIDLACNGV 950 + + +R AAG LP G G+ + + + + +LA R+ + + L G Sbjct: 836 PPQPVRQRVAAAGLLPCGELGQAWLQEEGRASVRLAGRLPGALRGEALPPQPVHLEIAGF 895 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPP 1010 + G L ++P+G L + ++ AQ + LWL HL+ CAS G + D Sbjct: 896 TLVGELYGLRPEGRLDFIVGKMNAAQRVALWLSHLILCASRPAGIAPHSACYDDAGSTLL 955 Query: 1011 LAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTK 1070 A L + +++G + PL + A+ + + D L A K Sbjct: 956 HDEIDAAGLLVPWLARWKQGQAQPLPFFGRTSWAYAEALAKNPD----KPDKALAAAWQK 1011 Query: 1071 FLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + + V + D+ +R +P + ++ LLPL Sbjct: 1012 WEPNFILGDGVA-QKDEPAIALAFRHQSPLEDPLFAQLAETLLLPLAE 1058 >UniRef50_A4JS85 DNA helicase/exodeoxyribonuclease V, gamma subunit n=11 Tax=Proteobacteria RepID=A4JS85_BURVG Length = 1209 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 390/1192 (32%), Positives = 558/1192 (46%), Gaps = 110/1192 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------- 53 L + H NR + L L+ ++ L P E E ILVQS G+AQWL++ L+ Sbjct: 9 LMLIHGNRSEQLRDLLVEWIKHYPLA-PLESETILVQSNGIAQWLKLALAADRDPATGEG 67 Query: 54 -FGIAANIDFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTL 110 GIAA +D LP+ F+W + VL + + S F+K + W+LM +LP L R F Sbjct: 68 GCGIAAALDVSLPSRFVWQAYRAVLGAESVAEVSPFDKSRLVWRLMRMLPALAARPAFEP 127 Query: 111 LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQ 162 LR +++DD D+RK FQL+ + ADLFDQY +YR DWLA+W G V + L + Q Sbjct: 128 LRRFISDDDDRRKRFQLAERLADLFDQYQMYRADWLARWADGDAVVLDARGGEQPLPDEQ 187 Query: 163 AWQAPLWKALVEYTHQLGQPRW-----HRANLYQRFIETLE--SATTCPPGLPSRVFICG 215 WQA LW LV R RA +++ F+ + P G+P R+ I G Sbjct: 188 RWQAALWHELVADVAGSDASREISSRGGRAAVHEAFMRRIAAWDDDRGPVGIPRRIVIFG 247 Query: 216 ISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELP 275 IS+LP L+AL AL + ++ + NPC +YW DI L +++ Sbjct: 248 ISSLPHQLLEALAALARWSQVMMCVANPCAHYWADIVPDRDLLGRRQPRQQRRTGMPAEL 307 Query: 276 LFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS--------------Q 321 D +PLLASWGK GRD+I LL +++ Q Sbjct: 308 DL------------DTLHLHAHPLLASWGKQGRDFIGLLDAFDNADAREHYGPKFARIGQ 355 Query: 322 ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHS 381 +D F LL +Q DI +L D SI FHV HS Sbjct: 356 RIDLFESRGASTLLQQLQDDIRDLRPLRETQET--------WPDVDPATDGSIRFHVAHS 407 Query: 382 PQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAI 439 QREVE+LHD+LLA DP+L P+D++V+V DI++Y+P +QAVFG RY+P+++ Sbjct: 408 AQREVEILHDQLLAAFNADPSLRPQDVVVVVPDIEAYAPHVQAVFGLVDRSDPRYIPFSV 467 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 +DR R++ P++ A LL LP++R D+L LLDVP L RF I E L LR W+ Sbjct: 468 ADREQRKADPLIGALEMLLGLPNARLAVSDLLDLLDVPALRKRFGIDETDLPKLRAWIRG 527 Query: 500 SGIRWGIDDDNVRELELPATGQ----HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSG 555 + IRWG+ L LP HTW FGL RMLLGYA+ S G W + P+DE G Sbjct: 528 ANIRWGLHAQQRASLGLPLDEHAAAPHTWAFGLRRMLLGYAVGSEAGAWHDIEPFDEVGG 587 Query: 556 LIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP-DAETEAAMTLIEQ 614 L A L+G L L+ L+ R LA+ +W R++ FF D+E + ++ Sbjct: 588 LDAALLGPLVRLIDALDHAWRSLAEPATAPDWCERLRNLKQTFFSAHDSEDAYTLARLDN 647 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 QA + A+ D +PLS++ D +LD+ +SQRF AG V TLMPMR+IPF+ Sbjct: 648 VLQAWLDACTEARLTDVLPLSVVSDHWLSQLDEGGLSQRFFAGAVTFATLMPMRAIPFRR 707 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 VCLLGMNDG YPR P+ FDLM + GDRSRR+DDRYL LEAL+SA+ L++S++GR Sbjct: 708 VCLLGMNDGDYPRARVPMDFDLMRLHYRPGDRSRREDDRYLLLEALLSARDHLHVSWVGR 767 Query: 735 SIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY 794 SI DN R PSVL+ +L D++ L G D + LT H PF + Sbjct: 768 SITDNGVRPPSVLIGQLRDHLAAGWRLAGASGAGPD----ALVKALTVEHPLQPFSVAYF 823 Query: 795 QPG-----ERQSYAREWLPAASQAGKAHSEFVQPLPFT-LPETVPLETLQRFWAHPVRAF 848 P +YA EW +P + + L L F A PV+ F Sbjct: 824 PPDTNDAAAVFTYAAEWRDEPRACRDPAPPAATHVPAIVRDDPLSLRELAEFLAKPVKTF 883 Query: 849 FQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLL---NALVEQDDA-----ERLFRR 900 F RL+V +++ + D EPF L+ L +++ +L+ A + DDA + Sbjct: 884 FSQRLRVALDVDETAVDDEEPFELDSLDAWKLQDELIGVQAAHMHDDDALVAARDARMAA 943 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ-----SMEIDLACNGVQ---- 951 R GD+ G FG++ + M +L E+ G Sbjct: 944 IRRRGDVVPGGFGDLASAALLEPMDELFAAYRKQLARWPVAIDGECEVAFQIAGESRVPG 1003 Query: 952 ITGWLPQVQPDGLLR-----------WRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL 1000 ++ WL Q + D R + + W+ HL +G + + + + Sbjct: 1004 LSDWLGQWREDSEGRRARLVLETSALVEKGAYRYHKLVGHWVRHLAANLAGRH-VTTVIV 1062 Query: 1001 RKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDD 1060 K G PLA +L+ L++ + GM PL V ES AWL + + Sbjct: 1063 SKKGIVELRPLAGGDTEAHLTALLQVWDAGMREPLPVAVESAFAWLVRRFGKDGNGA-AP 1121 Query: 1061 DSTLQKARTKFLQAYEGNMMVRGEGD-DIWYQRLWRQLTPETME-AIVEQSQ 1110 + T A Y G+ +GE R + + ++ Sbjct: 1122 EDTRAAAEKAARSKYAGDAYNKGEVAKSASLGRAFPDFDALCADGRFEALAE 1173 >UniRef50_P44945 Exodeoxyribonuclease V gamma chain n=21 Tax=Haemophilus influenzae RepID=EX5C_HAEIN Length = 1121 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 400/1170 (34%), Positives = 625/1170 (53%), Gaps = 102/1170 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VY+SN+L+ + ++ + + +DPF+ ++ILVQS MAQWLQ+ L+++ GI+AN+ Sbjct: 1 MFIVYYSNQLEKQKEILSSLFKSLPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT--DD 118 FP+PASFIW ++ + LP E+ F+K SM W+LM L+P LE+E+F+ LR+YL+ Sbjct: 61 KFPMPASFIWQLYAQNLPATALENPFDKDSMMWRLMRLIPIFLEKENFSPLRNYLSSSPH 120 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA--------------- 163 S++ KL+QLSSK ADLFDQYLVYRP+W+ WE G + + Q Sbjct: 121 SEQYKLYQLSSKIADLFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQG 180 Query: 164 ---WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 WQ LW+ALV HRA L+ +F+ L P LPSR+FI GI ALP Sbjct: 181 NTKWQGELWRALVVDVKSDVNEATHRAALHNQFLALLADKK-APKKLPSRIFIFGIPALP 239 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPA-YLAKLLTRQRRHSFEDRELPLFRD 279 YL LQA+ ++IHL F NPC+ YWGDI D + R + + ++ + D Sbjct: 240 TAYLNILQAISSEVDIHLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSED 299 Query: 280 SENAGQLFNSD-----GEQDVGNPLLASWGKLGRDYIYLLSDLESS---QELDAFVDVTP 331 + + D +GNPLLA+WGK+GRD++Y+L E ++A+ ++ Sbjct: 300 QLSQLENAQFDVTYQKENLQLGNPLLAAWGKMGRDFLYILVRDEEHIPTYPVNAYQEIES 359 Query: 332 DNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHD 391 ++LL +QS IL LEN+ + D ++T H CHS REVEVLHD Sbjct: 360 NSLLGQLQSQILHLENK---------------PLNIAKNDRTLTLHSCHSAMREVEVLHD 404 Query: 392 RLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD-RYLPYAISDRRARQSHPV 450 LL + +DP+LTP+D++VMVADI+ Y+P+IQAVFG D +P+++SD + +S + Sbjct: 405 YLLDLFNQDPSLTPKDVVVMVADINQYTPYIQAVFGQKNGDVPQIPFSLSDNKLSESDVL 464 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 + ++++LL L +S F +EDVL LLD+P + RF+I+ L +R+WV +SGIR+G+ Sbjct: 465 VSSYLTLLRLKESNFSAEDVLVLLDIPAMRERFNISLADLPLVREWVTDSGIRFGL---- 520 Query: 511 VRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQ 570 + ++W+ GL RM+LGYAM QG WQ L + S GL EL G+L+ Sbjct: 521 --QKNQDGINFNSWQAGLERMILGYAMREEQGIWQDSLGLNSSYGLKGELAGNLSHFFTA 578 Query: 571 LNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD 630 L+ L Q +E+W + +L+ FF+ + +T + I+++ + + + Sbjct: 579 LSALHETLQQAHSIEKWQEILTALLSDFFVRNEDTSDMIFYIQEKINELAEHLKTLHFNE 638 Query: 631 AVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLA 690 + ++ D + +L+ S +FLAG VN CTL+PMRS+PFKVVCLLGMND YPR Sbjct: 639 ELQAEVIADVITMQLEDAPNSLKFLAGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQT 698 Query: 691 PLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 P FDLM ++GDR RRDDDRYLFLEAL++A+ YISY+GRSI DN + PSVLV + Sbjct: 699 PNSFDLMQYHYQKGDRVRRDDDRYLFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQ 758 Query: 751 LIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ--SYAREWLP 808 L+DYI Q + H F P N++ E+ S+A +WLP Sbjct: 759 LLDYINQG---------------QKENVLTVIEHPMTAFSPDNFKNNEKFTRSFATKWLP 803 Query: 809 AASQAGKA-HSEFVQPLPFTLP--ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 A + +SEF + L E V L+ L F +PV+ FF+ +L V FR +D I Sbjct: 804 IAQFDASSNNSEFAVTMTENLEKIEEVELDALVSFVENPVKFFFEKQLGVYFRDKDERIA 863 Query: 866 DTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 D+E F L GL Y +N L+ +++ + FR+ G LP FG+++ E + Sbjct: 864 DSENFTLSGLDNYSLNNDLI--YLDEQNFADYFRQAEVKGVLPRAEFGKVYAENIRDNVL 921 Query: 926 QLADRVIACRQPGQS-MEIDLACN------GVQITGWLPQVQPD--GLLRWRPSLLSVAQ 976 + ++ + + ++ +L+ + +++ G++ + D ++ W + Sbjct: 922 EFKKKIADLGEAKHASVDFNLSVDWQNENQKIRLFGYMDALFGDDSQVIHWHFAKYKDRY 981 Query: 977 GMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 ++ W+ +L+ C + N + +D PP+ E AL L ++ Y + L Sbjct: 982 CIRPWIYYLIQCVTQENAVPAKLITQDKVLELPPIEREVALAQLQIYVKDYLQSQIEIQL 1041 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 V T + + + D++S +K + E N G D ++ R+ Q Sbjct: 1042 VP---------TVRNISDFIVSDENSVSEK----LQELTESNGF--GPKADPYWSRVLAQ 1086 Query: 1097 LT----PETMEAIVEQSQRFLLPLFRFNQS 1122 + PE + +++Q++ + LF ++ Sbjct: 1087 TSRFKQPENIAKLLKQTKAWFGLLFAQKKT 1116 >UniRef50_A1TWK1 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Marinobacter RepID=A1TWK1_MARAV Length = 1197 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 390/1216 (32%), Positives = 577/1216 (47%), Gaps = 137/1216 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------- 53 H+N L+ L + +I + + P + E LVQS G+AQWL++ L++K Sbjct: 11 FHAIHANHLEDLRRAVVYICRQNPMP-PLQSETFLVQSNGIAQWLKLALAEKRTEDGVEG 69 Query: 54 -FGIAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLL-EREDFT 109 GIAA +DF PA FIW + VLP+ +P++S F+K+ + W+L LLP+L+ + E FT Sbjct: 70 GLGIAAGMDFLFPARFIWQAYRAVLPDGEVPEQSPFDKRRLVWRLYRLLPELVGQDEAFT 129 Query: 110 LLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEA 161 L +L + FQL+ K ADLFDQY V+R DWLA WE G V + L Sbjct: 130 PLARFLDGRDTDLRNFQLAEKVADLFDQYQVFRADWLAAWEQGKDVVITARGEEKALDTE 189 Query: 162 QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCP--PGLPSRVFICGISAL 219 WQ LW+ LVE + R+ ++ RF+ + + LP R+ + G+S+L Sbjct: 190 ACWQPLLWRKLVEDVG--SEAHTSRSQIHTRFMAQGQHISEPANASRLPKRIVVFGVSSL 247 Query: 220 PPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD 279 P L+AL L + ++ L NPC++YW DI L K ++ Sbjct: 248 PRQALEALYVLSRFSQVVLCVHNPCQFYWADIISDRELLKAERKRGAAHPV--------- 298 Query: 280 SENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVD 328 Q+ + D NPLLA+WGK GRDYI LL + ++ + +D F D Sbjct: 299 ---LSQIDDPDQLHQHANPLLAAWGKQGRDYIRLLDEFDNPDDYRASFQTPGQKIDIFTD 355 Query: 329 V---TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQRE 385 LLH +Q+DI L R + D S+ FH H PQRE Sbjct: 356 HGDVDNPCLLHQLQNDIHNLTPLQEI--------RQQQRTVDLTRDHSVVFHDAHGPQRE 407 Query: 386 VEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRR 443 VE+LHD+LLA DPTL PRD+IVMV DI+ Y+P IQAVFG R++P+ ISD+ Sbjct: 408 VEILHDQLLAAFNADPTLRPRDVIVMVPDINVYAPHIQAVFGRYSPGRKRHIPFTISDQG 467 Query: 444 ARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR 503 R PVL A +L+SLP SRF ++++LL+V + RFDI+E+ + R+WV + IR Sbjct: 468 QRHHEPVLIALETLMSLPRSRFGVSEIISLLEVAGIRDRFDISEDDIPLARRWVEGANIR 527 Query: 504 WGIDDDNVRELELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVG 562 WG+ + L+LPA ++TW+ GL MLLGY M W V PY E GL A L G Sbjct: 528 WGLHGKHRESLDLPAELERNTWQAGLRAMLLGYGMGD-DQPWGGVEPYGEIGGLQASLAG 586 Query: 563 HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF-LPDAETEAAMTLIEQQWQAIIA 621 L + QL + L R EW + ML FF + + + +Q + + Sbjct: 587 RLGEFVHQLEALWQALQATRTPGEWEALFSAMLEQFFHKVEGQDLLLLNRFRRQLEQWLD 646 Query: 622 EGLGAQYGD-AVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGM 680 + L A +PL++++D L Q LD+ ++QRFLAG VN TLMPMR+IPF+ VCLLGM Sbjct: 647 DALAAGLEQQPLPLNIVKDVLLQGLDEGGLNQRFLAGKVNFATLMPMRAIPFRKVCLLGM 706 Query: 681 NDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS 740 NDG YPR P+ FDLM+Q + GDRSRR+DDRYLFLEAL+SA+++LYIS++GRSI+D+S Sbjct: 707 NDGDYPRSRPPVDFDLMAQDYRPGDRSRREDDRYLFLEALLSAREQLYISWVGRSIRDDS 766 Query: 741 ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY------ 794 ER PSVL+ +L D++ + G + V LT H PF + Sbjct: 767 ERPPSVLISQLQDHLNSLWKVAGQPDGS-------VTKALTTQHPLQPFSRDYFPRTNGV 819 Query: 795 ---------------QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQR 839 Q +Y REW A + S P T E + L L Sbjct: 820 GDGEETQPKPLADVLQARGLFTYEREWRSAHAVDNPEQSREALPY-QTPEEPISLTELAN 878 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER--- 896 F P+ F+Q RLQV F + + D E F L GL R++++ +L++ V + +E Sbjct: 879 FLKKPIDTFYQRRLQVRFEAVEEDDTDNENFDLNGLDRWRLDNELIHEGVVKAASEEELH 938 Query: 897 -----LFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ-----SMEIDLA 946 R GDL G + L R + + Sbjct: 939 ERLEATLDRMARRGDLGMGVTEHRLRTELAGRLPDLFQRYRGALAEWPEAVAEPLPFEFR 998 Query: 947 ----CNGVQITGWLPQVQPD------GLLRWRPS---------LLSVAQGMQLWLEHLVY 987 V++ + ++ + L+ + A ++ WL HL Sbjct: 999 YSDSTGAVEVADLIDNLRCNPAGQLCRLVIASSGLLTGSGYSKKVRYANLLRDWLVHLAG 1058 Query: 988 CASGGNGESRLFLRKDG-EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWL 1046 SG E+ + +++G ++RFP +A EQA + ++ + E + L + E+G AW+ Sbjct: 1059 QLSGQPFETVILGKEEGRKFRFPVMAPEQAQKHFEAILGRWMEATTRTLPIHCEAGFAWI 1118 Query: 1047 KTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME-AI 1105 + Y + ++ D + + +A + D + + Sbjct: 1119 TSFYGGKK-SVGDHERAISEAEQA--------YSTALDRDTGYLLGAFESPEALMASGEF 1169 Query: 1106 VEQSQRFLLPLFRFNQ 1121 + +PL+ Q Sbjct: 1170 EALLHQLYVPLWEAEQ 1185 >UniRef50_D2BZV3 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Gammaproteobacteria RepID=D2BZV3_DICD5 Length = 1169 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 410/1180 (34%), Positives = 584/1180 (49%), Gaps = 99/1180 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-----FGI 56 L HSN + L ++ + L E E+ILVQS G+ QWL++ L++ G+ Sbjct: 10 LMAIHSNHPEALRDVLVSWMAAHPLSG-LENELILVQSNGIGQWLKLALARDTHDGGCGV 68 Query: 57 AANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHY 114 AA +D LP+ F W + VL +P+ S F+K + W+L+ LLP LL + +F L + Sbjct: 69 AAALDIQLPSRFFWQAYRAVLGREQVPETSPFDKPLLVWRLLRLLPDLLTQPEFAALARF 128 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQAWQA 166 L D+D RK +QL+ + ADLFDQY VYR DWLA W G V E L E Q WQ Sbjct: 129 LRQDTDLRKHYQLAERLADLFDQYQVYRADWLADWSEGRDVLTSHRRGVEPLPEEQRWQP 188 Query: 167 PLWKALVEYTHQLGQPRWHRANLYQRFIETLES--ATTCPPGLPSRVFICGISALPPVYL 224 LW+AL+ T + RA L++RF++ ++ + P GLPSRV + GIS+L L Sbjct: 189 LLWRALLADTGE-ALSGTSRAALHRRFLDEVDRRGDSERPAGLPSRVVVFGISSLSQQAL 247 Query: 225 QALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG 284 + L A+G+ ++ + NPC +YWG+I L + +++ E+ Sbjct: 248 ELLAAIGRWTQVFMCVHNPCEHYWGNIIADKDLLRAERARQQRKPGMPEVIAL------- 300 Query: 285 QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVDVTPDN 333 + +PLLA+WGK GRDYI LL + + ++ +D F D Sbjct: 301 -----EELHQHAHPLLAAWGKQGRDYIGLLDEYDQREQYESLLQPVISRIDLFNSNGEDC 355 Query: 334 LLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRL 393 LLH +Q DI +L A + RS DSS+ FH+ HSPQREVEVLHD+L Sbjct: 356 LLHQLQDDIRDLRPLAES--------RSRWPAIDSDQDSSVRFHLAHSPQREVEVLHDQL 407 Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP---ADRYLPYAISDRRARQSHPV 450 LA DPTL P D+IVMV DI+SY+P IQAVFG RY+P++++DR ARQ++ V Sbjct: 408 LAAFAADPTLRPSDVIVMVPDINSYAPHIQAVFGLIDRQKDPRYIPFSVADRGARQNNLV 467 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 L A LL LP SR DVL LLDVP + RF I EE L L++W+ + +RWG+ Sbjct: 468 LAALEKLLHLPQSRVAVSDVLDLLDVPAVRQRFAIEEEQLPLLQRWIRAANVRWGLHARQ 527 Query: 511 VRELELP-ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLM 569 + L LP A Q++W FGL RMLLGYA+ + G W+ + P DE GL A L G LA LL Sbjct: 528 RQSLNLPDAPEQNSWFFGLRRMLLGYAVGAG-GAWRDIEPLDEIGGLDAALAGQLAWLLD 586 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAA-MTLIEQQWQAIIAEGLGAQY 628 +L+ + L Q +W R +L+ FF D + + +++ Q + Sbjct: 587 RLDYSWQQLCQPATPVQWCERLRVLLSTFFAADDGEDGFMLLQLDEGLQNWLEACESVAL 646 Query: 629 GDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688 +PLS++R+ +Q ++Q F AG V TLMPMR+IPF+ VCLLGMNDG YPR Sbjct: 647 TQELPLSVVREHWLGLFEQTSLTQPFFAGAVTFATLMPMRAIPFRHVCLLGMNDGDYPRN 706 Query: 689 LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748 PL FDLM Q + GDRSRR+DDRYLFLEAL+SA+++LYIS++GRSI DNSER PSVLV Sbjct: 707 RVPLDFDLMGQDYRPGDRSRREDDRYLFLEALLSARERLYISWVGRSIHDNSERPPSVLV 766 Query: 749 QELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE-RQSYAREWL 807 +L D++ + V LT H PF P+ + G SYAREW Sbjct: 767 AQLRDHLSNGWRIVN---------GQDVLPALTVEHRLQPFSPEYFTAGSSLFSYAREWR 817 Query: 808 PAASQAGKAHSEFVQPLPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 A S+ L + + L L F PVR+FF++RL V F ED Sbjct: 818 AGLPSYDGASSQTAAASDAVLDDYVQDGVLTLRQLADFVRDPVRSFFRLRLNVWFEQEDP 877 Query: 863 EIPDTEPFILEGLSRYQINQQLLN--------ALVEQDDAERLFRRFRAAGDLPYGAFGE 914 D EPF ++ L +++ +L+ + + +R G+L G F Sbjct: 878 TSQDQEPFAIDALENWRLQHELIQVQKAALQRQIPREQALAEHLQRITRRGELAPGGFAT 937 Query: 915 IFWETQCQEMQQLADRVIACRQPGQSM--EIDLACNGVQITGWLPQVQPD---------- 962 + + + M L R R + + L+ + + WL +++ D Sbjct: 938 VLEQDLAEPMADLFTRYEQERDKWPTPIPDEPLSLPELPLEDWLNELRLDEQGNRCRLVL 997 Query: 963 ---GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHY 1019 GLL + + + W+ HL GG+ + K+G P L QA Y Sbjct: 998 ESGGLLHPTRRSYRLDKLLPFWVAHLAGH-LGGHALHSTLVSKNGTVHLPALEPAQAAAY 1056 Query: 1020 LSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNM 1079 L++ +REGM PL V ++G WL+ D + AR + + N Sbjct: 1057 WQSLMDAWREGMRCPLPVAVKTGFRWLEV---GGELGQSADGEAGKAARQCYEEHDPANR 1113 Query: 1080 MVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLFR 1118 + + R + + Q+ L PL Sbjct: 1114 KYAESASNPYLARAFPTFEHLWADGEFARWVQQLLAPLHH 1153 >UniRef50_C1DMH2 Exodeoxyribonuclease V, gamma subunit n=18 Tax=Gammaproteobacteria RepID=C1DMH2_AZOVD Length = 1168 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 431/1179 (36%), Positives = 597/1179 (50%), Gaps = 93/1179 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAAN 59 L V H NRL+ L L + R L P E E++LVQS G+ QWL++ L+ + GIAA Sbjct: 11 LMVVHGNRLEALRELAVEWMRRHPLA-PLEDEVVLVQSNGIVQWLKLALAGRDGCGIAAA 69 Query: 60 IDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 I LPA F+W + VL IP+ES +K ++W+LM LLP LLE E F LR +L D Sbjct: 70 IRVELPARFLWQSYRAVLGSAGIPRESPLDKAPLTWRLMRLLPNLLEGEAFAPLRRFLED 129 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL--------VEGLGEAQAWQAPLW 169 DSD RK QL+ + ADLFDQY VYR DWLA W GH L EA WQ LW Sbjct: 130 DSDLRKRHQLAERLADLFDQYQVYRADWLADWAEGHDRLRTSRDGARPLDEAARWQPALW 189 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 +AL+ + RA ++ RF+E L PPGLP RV + GIS+LP L+AL A Sbjct: 190 RALLADVGRDTV-ATSRAGVHLRFVERLRGLDAPPPGLPRRVMVFGISSLPAQALEALAA 248 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L + ++ L NPCRY+WGDI L + R++R + ++ Sbjct: 249 LARFSQVLLCVHNPCRYHWGDIVPDQDLLRHQYRRQRRK------------DGMAPGLSA 296 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVD---VTPDNLL 335 + +PLLA+WGK GRDYI LL + + +D F + P +LL Sbjct: 297 EDLHQHAHPLLAAWGKQGRDYINLLDRYDDPEHYRERFASLGGRIDLFDEEDGPRPGHLL 356 Query: 336 HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLA 395 +Q DIL L R + D S+ FH+ HS QREVE+LHD+LLA Sbjct: 357 GQLQDDILHLRTLEET--------RKEWPLVDPKADRSLRFHIAHSAQREVEILHDQLLA 408 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEA 453 DP L PR++IVMV D+++Y+P IQAVFG DRY+P++++D+ R P+ A Sbjct: 409 RFAADPGLRPREVIVMVPDVNAYAPHIQAVFGQYARDDDRYIPFSLADQGQRGCDPLPIA 468 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 LL LP+ R +VL LLDVP L ARF I E L LR+W+ +GIRWG+D + Sbjct: 469 VEQLLKLPEGRLTVSEVLDLLDVPALRARFAIEESDLPTLRRWIEGAGIRWGLDAERRAG 528 Query: 514 LELPA-TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 L LPA Q+TWRFGL RMLLGYA+ S + P+DE GL A L+G L LL L+ Sbjct: 529 LGLPAGLEQNTWRFGLRRMLLGYAVGSGAPC-AGIEPFDEIGGLEAVLIGPLVRLLEALD 587 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMT-LIEQQWQAIIAEGLGAQYGDA 631 R LA+ EW + + ML FFL +E + + + + + + G + Sbjct: 588 DLHRRLARPVAPAEWGRILQAMLGDFFLARSERDETLLGQLGEALEEWLELCAGVDLDEP 647 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 +PL ++R+ LD+ R+SQRFLAG VN CTLMPMR+IPF+VVCLLGMNDG YPR P Sbjct: 648 LPLGVVREAWLGLLDRGRLSQRFLAGAVNFCTLMPMRAIPFRVVCLLGMNDGDYPRSQTP 707 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 L FDLM+ + GDRSRR+DDRYL LEAL++A+++LY+S++GRS++DN ER SVLV +L Sbjct: 708 LDFDLMAGDYRPGDRSRREDDRYLLLEALLAAREQLYVSWVGRSVRDNCERPASVLVGQL 767 Query: 752 IDYIGQSHYLPG---DEALNCDESEARVKAHLTCLHTRMPFDPQNYQ-PGERQSYAREWL 807 D++ LP + + + + R+ A LT H PF + ++ SYAREW Sbjct: 768 RDHLASGWRLPEEYHEASDSEADKAKRLLAALTTEHPLQPFSRRYFEGDDALFSYAREWA 827 Query: 808 PAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 + A + P PF + LETLQ F PV+ FF RL+V+ D Sbjct: 828 ALHRRDAPAGAARALP-PFEPDGALALETLQNFLRDPVKHFFTQRLKVHLDESMQAQLDE 886 Query: 868 EPFILEGLSRYQINQQLLNALVEQDDAE---------RLFRRFRAAGDLPYGAFGEIFWE 918 EPF L+GL +Q+ Q LL+A + + R + +G LP FGE E Sbjct: 887 EPFGLDGLQLHQLRQSLLDAASLALEDDPARVEAALEAAALRLQRSGRLPLAGFGERLRE 946 Query: 919 TQCQEMQQLADRVIAC-----RQPGQSMEIDLACNGVQITGWLPQVQPD---GLLRWRPS 970 + + + R + + + GV++ GWL ++ + L R Sbjct: 947 QLLKPLPEQMRRYQSLCSLWSTRLESPKPLWFEHEGVELAGWLGGLRENAGGALARIELQ 1006 Query: 971 LLSVAQGMQLWLEHLVYC--------ASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQ 1022 + +G W H + A+ G + L + +D F P+ +A L Sbjct: 1007 PGELKRGKDDWKWHRLLRPWVAHVAAAACGAPLTSLLVGQDASLEFAPIEQARAQAILRL 1066 Query: 1023 LIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVR 1082 +E +R G+ APL V + AWL ++ + D A +AYEG Sbjct: 1067 WLEAWRAGLEAPLPVALNTAIAWL--------NSGEEGDEEGGTAEKAAREAYEGGYNRS 1118 Query: 1083 GEGD-DIWYQRLWRQLTPETMEA-IVEQSQRFLLPLFRF 1119 GE R + + E S+ L Sbjct: 1119 GELAGSASLARQYPTFDDLIADRDFYEWSRDLYQSLLDH 1157 >UniRef50_C0QI08 RecC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI08_DESAH Length = 1206 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 379/1222 (31%), Positives = 574/1222 (46%), Gaps = 142/1222 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAAN 59 L + H+N L+ L + V L E E +VQS GMAQWL++ ++ GI+A Sbjct: 16 LSIIHANHLEDLRDVAVHWVRTHPL-GVLETEQFIVQSKGMAQWLKLAVAADDGCGISAG 74 Query: 60 IDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD 117 I+ LP +++W + +L IP +S ++++ + W+ ++LP LL + F+ L +L + Sbjct: 75 IETQLPGTWVWTAYRAILGNDTIPTDSPYDRERLVWRFFSILPTLLTDDIFSPLNRFLEN 134 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQAWQAPLW 169 D+D+R+ +QL+ + ADLFDQY VYR DWL QW + AWQA LW Sbjct: 135 DTDQRRQYQLACRLADLFDQYQVYRADWLKQWAGEKDQLLTGGGQWVDIPPQHAWQAELW 194 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + L R++L+Q F++ P LP RV + GIS+LP L+ L A Sbjct: 195 RRLRARV-PASLRNIGRSDLHQAFLQKASDTRVRPEILPPRVIVFGISSLPKQVLETLYA 253 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 + ++ L NPCR++W DI + L ++ + D Sbjct: 254 VSHLCQVLLFVNNPCRHFWADIIEDRELLRIDHARHSGKATMPTPLDPVDV--------- 304 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ-------ELDAFVD----VTPDNLLHNI 338 NPLLA+WGK GRDYI L+ ++ + E+D F D T LLH I Sbjct: 305 ---YRHANPLLAAWGKQGRDYIGLVYGYDTPETYRKNFAEIDLFRDVIAQDTRGTLLHEI 361 Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 Q IL+LE A ++++RP+ D +ITF V HS QREVE+L D+LL E Sbjct: 362 QQAILDLEPSAP---------DNESRRPIARGDRTITFQVAHSRQREVEILQDQLLHSFE 412 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGS--APADRYLPYAISDRRARQSHPVLEAFIS 456 L PRD++VM DI+ Y+P I+AVFG+ R++P+ I+D ++S P+++A Sbjct: 413 TLDNLLPRDVVVMTPDIEGYAPHIEAVFGNLSLDDPRFIPFTIADHPGKKSVPLVKALER 472 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL LPD R + D++ LL+VP RF E L L QW+ +GI WG++ L Sbjct: 473 LLHLPDLRMAARDLMDLLEVPAFQRRFGFKETDLPRLFQWIKGAGISWGLNKSQRASFGL 532 Query: 517 PAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 P Q TW FGL RMLLGYA+ + + W ++ PYDE GL A LVG +A ++ +L Sbjct: 533 PPDLDQTTWAFGLNRMLLGYAVGNNKA-WHNIEPYDEIGGLEAHLVGLVAGVVERLEALW 591 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEA-AMTLIEQQWQAIIAEGLGAQYGDAVPL 634 L E W + R + FF P +E + ++Q + A + L Sbjct: 592 TTLQSSACPERWCLILRTLARDFFEPVDASERLVLNRMDQVLDDWLNACTQADLDQELTL 651 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 ++RD +++ + +SQ+FLAG VN TLMPMR+IPFKVVCLLGMNDG +PR PL F Sbjct: 652 CVVRDYFLEKMAVQGVSQKFLAGMVNFGTLMPMRAIPFKVVCLLGMNDGAFPRSHPPLDF 711 Query: 695 DLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 DLM++ + GDRS R+DDRYLFLEAL+SA++ Y+S++GR ++DN ER PSVLV +L Sbjct: 712 DLMAEPGMYRPGDRSTREDDRYLFLEALLSARETFYLSHVGRDVRDNGERTPSVLVGQLR 771 Query: 753 DYIGQSHYLPG----------------------DEALNCDESEARVKAHLTCLHTRMPFD 790 DYI L E+ + + + HLT +H PF Sbjct: 772 DYIDAGWTLEPGCAEPERPESECSEPERLGSECPESGQPNYEGSGLLDHLTTIHPLQPFG 831 Query: 791 PQNYQPGE--RQSYAREWLP-AASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRA 847 + E +YA+EW + + EF++ P + + L L F +PV+ Sbjct: 832 RAYFSSPEAPLFTYAQEWRNCLGRREDQPREEFLETPPCV--DALTLSPLIGFMKNPVKF 889 Query: 848 FFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF--------- 898 F+ L + F E D EPF L+ L+ + + LL+A + + L+ Sbjct: 890 FYNHCLSIRFDDISLENLDHEPFALDLLAPFNLGATLLSAGLAAGVSPELYPGRGGPCVV 949 Query: 899 --------RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ----SMEIDLA 946 R G+LP FG + + + + R + + MEI L Sbjct: 950 EAAVVEAADRLTRTGELPMAGFGTLAAKNLTAPVIAMLTRYGSLAERWPRACDPMEIALV 1009 Query: 947 CN-----GVQITGWLP--------------------QVQPDGLLRWRPSLLSVAQGMQLW 981 +++ WL Q P +L LL + + LW Sbjct: 1010 IEQDGWPEIRLDDWLDNMITTDFDDPGAILPQFARQQFYPRNILDKGGKLLLLYPLVPLW 1069 Query: 982 LEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPES 1041 + H+ CA G + + D F PL A L ++ +R+G++ PL V ++ Sbjct: 1070 ISHVAGCAMGI-DLTSHLIAPDAVAAFHPLDKAAAFSVLMDILTVFRQGLARPLPVTAKT 1128 Query: 1042 GGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGN-MMVRGE-GDDIWYQRLWRQLTP 1099 G A++ Q+A+ + Y G+ RGE G D + QR + Sbjct: 1129 GVAYVAALMAKDE----------QRAKNDAARVYAGDGFNARGELGYDPYLQRTFPDFDA 1178 Query: 1100 ET---MEAIVEQSQRFLLPLFR 1118 + + LP+ + Sbjct: 1179 LWQARDNFFKDLAATLYLPMVQ 1200 >UniRef50_A3JIN1 Exodeoxyribonuclease V gamma chain n=2 Tax=cellular organisms RepID=A3JIN1_9ALTE Length = 1224 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 387/1230 (31%), Positives = 568/1230 (46%), Gaps = 144/1230 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------- 53 H+N L+ L + FI ++ L P + E LVQS G+AQWL++ L++K Sbjct: 19 FHAIHANHLEDLRRAVVFICQQNPLP-PLQSETFLVQSNGIAQWLKLALAEKRSENGSEG 77 Query: 54 -FGIAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQL-LEREDFT 109 GIAA +DF PA FIW + VLP+ +P++S F+K+ + W+L LLP+L L E F Sbjct: 78 GLGIAAGMDFLFPARFIWQAYRAVLPDGDVPEQSPFDKRRLVWRLYRLLPELVLTDEAFN 137 Query: 110 LLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEA 161 L +L + FQL+ K ADLFDQY V+R DWLA WE G V + + + Sbjct: 138 PLARFLDGSDTDLRAFQLAEKVADLFDQYQVFRADWLAAWEQGRDVVISTRNGEKPIEQD 197 Query: 162 QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTC--PPGLPSRVFICGISAL 219 WQ LW+ LVE T + R+ ++ RF++ + P LP R+ + G+S+L Sbjct: 198 TRWQPMLWRKLVEDTG--AEAHTSRSQIHTRFMKQGQQVAAPSHPSRLPKRIVVFGVSSL 255 Query: 220 PPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD 279 P L+AL L + ++ L NP ++YW DI L K ++ Sbjct: 256 PRQALEALYVLSRFSQVVLCVHNPSQFYWADIVSDRELLKAERKRGASH----------- 304 Query: 280 SENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVD 328 Q+ ++D NPLLA+WGK GRDYI LL + ++ E +D F + Sbjct: 305 -PTLSQIDDADQLHQHANPLLAAWGKQGRDYIRLLDEFDNPDEYRNSFQTPDQKIDIFSE 363 Query: 329 V---TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRP------------------- 366 LLH +Q+DI L + S Sbjct: 364 HGAGQTTCLLHQLQNDIYNLTPLQEIRDEQRKLDLSQGHPLTAEGSLSAEGSLSAEGSLP 423 Query: 367 ---------LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 D S+ FH HSPQREVE+LHD+LLA D TL PRDI+VMV DI+ Sbjct: 424 AEGSLSSEGFPKADGSVAFHNAHSPQREVEILHDQLLAAFNADDTLRPRDIMVMVPDINV 483 Query: 418 YSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Y+P IQAVFG R++P+ ISD+ R PVL A +L+SLP RF ++++LL+ Sbjct: 484 YAPHIQAVFGRYTAGRKRHIPFTISDQGQRNHEPVLIALETLMSLPRHRFGVSEIISLLE 543 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT-GQHTWRFGLTRMLLG 534 VP + RF+I EE + R+WV + IRWG+ + LELPA ++TW+ GL MLLG Sbjct: 544 VPGIRDRFEIAEEEIPLARRWVEGANIRWGLHGAHRESLELPADLDRNTWQSGLRSMLLG 603 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 Y M W V PY E GL A L G L + +L + L R +EW + M Sbjct: 604 YGMGD-DEPWAGVQPYGEIGGLQASLAGRLGDFVYRLEKVWQDLQASRTPQEWEALFAAM 662 Query: 595 LNAFF-LPDAETEAAMTLIEQQWQAIIAEGLGAQYG-DAVPLSLLRDELAQRLDQERISQ 652 L FF + + +Q + + + L A +PL++++D L LD+ ++Q Sbjct: 663 LEQFFHKVEGHDLLLLNRFRRQLEQWLDDTLAAGLEHQLLPLNIVKDVLLDGLDEGGLNQ 722 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDD 712 RFLAG VN TLMPMR+IPF+ VCLLGMNDG YPR P+ FDLM+Q + GDRSRR+DD Sbjct: 723 RFLAGKVNFATLMPMRAIPFRTVCLLGMNDGDYPRSRPPVDFDLMAQDYRPGDRSRREDD 782 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 RYLFLEA++SA+++LYIS++GRSI+D+S R PSVLV +L D++ LPG + Sbjct: 783 RYLFLEAMLSAREQLYISWVGRSIRDDSPRPPSVLVGQLQDHLNGLWQLPGQPDV----- 837 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGE----RQSYAREWLPAASQAGKAHSEFVQPLPFTL 828 V LT H PF + +Y EW A Sbjct: 838 --AVTDALTTCHPLQPFSRDYFPQSRHARSLFTYEHEWRRAHGTVSTDAQHKALAY-QQP 894 Query: 829 PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 E V L L F P+ F+Q RLQV F + + DTE F L GL R++++ +L+ Sbjct: 895 EEPVTLNDLSGFLKKPIDTFYQRRLQVRFEDVEDDDTDTENFDLNGLDRWRLDTELIEQG 954 Query: 889 VEQDDAER--------LFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ- 939 + + +E GDL G + L +R + Sbjct: 955 LLKASSEEDLEHRLETTLDCMARRGDLGMGTTEHRLRNELSGRLPNLFERYQSALAEWPE 1014 Query: 940 ----SMEIDLACNGVQ-------ITGWLPQVQPDGLLRWRPS------------LLSVAQ 976 + + + L + + R + + A Sbjct: 1015 EVGEPLAFEYRLANSTGSVEVLDLIDHLRRNHEGNICRLVIAGSSLLTGSGNTKKIRYAN 1074 Query: 977 GMQLWLEHLVYCASGGNGESRLFLRKDGE-WRFPPLAAEQALHYLSQLIEGYREGMSAPL 1035 M+ W+ HL + E+ + +++ RF PLA E A +L ++ + + + L Sbjct: 1075 LMRDWVIHLAGQIAAQPFETLILGKEEKRNVRFAPLAKETASKHLDAILARWMDANTRAL 1134 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDS--TLQKARTKFLQAYEGNMMVRGEGDDIWYQRL 1093 V E+G AW+ + Y ++ + + ++A T L E D + + Sbjct: 1135 PVHCEAGFAWIYSFYQSKKFLGEHEHAISDAEQAYTLAL-----------ERDTGYLRGA 1183 Query: 1094 WRQLTPETME-AIVEQSQRFLLPLFRFNQS 1122 + + +PL+ Q+ Sbjct: 1184 FESAELLLESGEFEALLHQLYVPLWEAEQN 1213 >UniRef50_Q7VRF1 Exonuclease V, subunit n=2 Tax=Candidatus Blochmannia RepID=Q7VRF1_BLOFL Length = 1139 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 386/1151 (33%), Positives = 631/1151 (54%), Gaps = 43/1151 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VYHSN LD+ L+ ++ ++L +P +PE+IL++ M+QW+++ L+ FGI+ANI Sbjct: 1 MFMVYHSNCLDLFMRLVINVMSNQKLSNPMKPEIILIEHKIMSQWIEIELTNYFGISANI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F SFI + + +L + S F+K M WK M +LP+L + +++ YL D + Sbjct: 61 IFMTIQSFIRKISIELLSDGIFISNFSKNFMYWKFMEILPKLYSSQKCAVIQKYLCFDVN 120 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG-EAQAWQAPLWKALVEYTHQL 179 ++KL QLS + LF +YL+YRPDWL W++ +++ L E Q WQ+ +W+ + +T Sbjct: 121 QKKLGQLSEQLVSLFLEYLIYRPDWLDMWKSNKIIDNLNIEHQLWQSEVWRMFLTHT--- 177 Query: 180 GQPRWHRANLYQRFIETLESA--TTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Q + + N R I L++ LP R+FI G++A+ P+Y + L+ L HI+I+ Sbjct: 178 -QLQLYEFNSENRCIFLLQNNYQQIDWTKLPDRIFIYGVTAIAPIYWKILKLLSDHIDIY 236 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLL-TRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 L NPC YW + + K + + HS+E R+ + + N L ++ Sbjct: 237 LWVINPCEKYWNNTDYMDDINKHVYHQSNNHSWEVRKKYYYNNRCNKSILKSN------- 289 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQ-ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 LL SWG++G ++LLS LE E+ +FV +++LH +Q++IL+ + + V Sbjct: 290 YSLLNSWGEVGFHTLHLLSQLERPLFEIQSFVFPKTNSMLHILQNEILQFKQYSSNEVQK 349 Query: 356 EEFSRSDN----KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 E + K L D SIT H CHS RE+EVLHD LL M D L P ++IVM Sbjct: 350 ESSIFKKSANMQKNILKSTDQSITIHECHSLYREIEVLHDNLLRMFSNDSALLPGEVIVM 409 Query: 412 VADIDSYSPFIQAVFGSAPADRYLPYAI-SDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 +I+ Y+ I+++F + +R LP++I SD HP++ +++L++P SRF E++ Sbjct: 410 APNINCYTESIKSIFNNMF-NRQLPFSILSDHSDYIHHPIISTILNILAIPTSRFTVEEI 468 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 +LL +P +A++F I +E ++ LR W+ ESG+RWG+D D LP T +TW FG R Sbjct: 469 FSLLSIPSIASKFSIDDEAMKLLRLWIVESGVRWGLDQDTQENFNLPVTEWNTWYFGFKR 528 Query: 531 MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPV 590 MLLGYA+++ G W+++ PY+ S +V L L L WR L L++W+ Sbjct: 529 MLLGYAIKNQNGSWKNIFPYNYISEEYVHVVSGLGEFLEILKKWRNRLNGAYTLQKWMLY 588 Query: 591 CRDMLNAFFL---PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 R+M+N FF + E A+ L++ W I+ G+ Y + V +++LRD+L +L Sbjct: 589 FREMINDFFDFSKLNVEENQALFLLKNCWTNILESGIQLGYINTVTINILRDKLLIQLMN 648 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 ++ + +FL +N C + PM I K++C++G++D +PR F+L+S++ + GD + Sbjct: 649 QKKNYQFLPNAINFCNITPMCFISCKILCIIGIHDNEFPRDRFSYDFNLISKRFRIGDNN 708 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGR-SIQDNSERFPSVLVQELIDYIGQSHYLPGDEA 766 D Y FL A + ++KLY+S+I + + + S+ + ELI+YI Q YL GD+ Sbjct: 709 ICGQDYYAFLLACLLPKEKLYLSFINKLAFCYGNSISSSIFIDELIEYIAQRFYLIGDQN 768 Query: 767 LNCDESEARVKAHLTCLHTRMPFDPQNYQPG-ERQSYAREWLPAASQA-------GKAHS 818 L+ + R++ +L ++ MPF N+ ++QS+A EWL AA Sbjct: 769 LDIISNIKRIRKYLLYKYSCMPFSCSNFIAYSKKQSFANEWLAAAYADKNITVFTQSQQQ 828 Query: 819 EFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT-EDSEIPDTEPFILEGLSR 877 LP + T+ L L F+ HPVR +FQ RL+V F + + E F + L R Sbjct: 829 FLTTSLPHIIVSTILLRDLYDFYRHPVRMWFQKRLKVYFYQCTHDILLNDETFFVSNLRR 888 Query: 878 YQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP 937 +Q+N +L++ + + + L+R F +G LPYG+FG+++W QC++M +LA ++ Sbjct: 889 FQLNVKLIDYFIHNKNIDTLYREFYDSGMLPYGSFGQLYWIEQCEKMYKLASKIKRYYSS 948 Query: 938 GQ-SMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES 996 ++ I +++ G L VQ +GL+RW+P+ LS+ +WLEHL+YC SGGNGES Sbjct: 949 KIFTLNITFKIETIKLIGELHSVQENGLIRWKPAYLSMRDCFLVWLEHLIYCFSGGNGES 1008 Query: 997 RLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 LF D W FP + QA L LI GY G++ PLL+L +SGGAW+ +D N Sbjct: 1009 WLF-GTDSTWHFPNFSKIQAQELLFFLISGYCLGINVPLLLLYKSGGAWINYVFDWNNRV 1067 Query: 1057 MLDDDSTLQKARTKFLQAYEGN-----MMVRGEGDDIWYQRLWR-QLTPETMEAIVEQSQ 1110 + D +KA + + ++G+ E D + ++L L E + I + S+ Sbjct: 1068 ICSDPDIHKKACQRLIYTWQGSSDDTQFSYLRESQDPYLRKLIPLYLNEEDIRIITDVSK 1127 Query: 1111 RFLLPLFRFNQ 1121 +LL L R+ Sbjct: 1128 DYLLDLMRYRI 1138 >UniRef50_Q2SQD5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD5_HAHCH Length = 1073 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 351/1140 (30%), Positives = 566/1140 (49%), Gaps = 87/1140 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y+SNR + + +P + ++++VQS GM++WL L++ G+AAN+ Sbjct: 1 MLKIYYSNRQEQ-LLALLADALARPKANPLQSDILIVQSQGMSRWLSQQLAEINGVAANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT---- 116 +F LPA IW + ++P+ F+K ++W+LM L P L + +F L YL Sbjct: 60 EFQLPAQLIWRLARLCRDDLPELHPFDKSILTWRLMQLAPGLPDSGEFDALHRYLHTGPD 119 Query: 117 -DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEY 175 D + +QLS + AD+FD YL+YRPDWL++WE G E AWQ LW+ L Sbjct: 120 RKSPDLLRNYQLSQRIADVFDHYLMYRPDWLSEWEQGLPTEAGASEHAWQIELWRGLTHD 179 Query: 176 THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 + HRA + Q L LP R+F+ G+ + P YL LQ +HIE Sbjct: 180 SDAP-----HRARVLQELAAQL---PQHVDKLPPRLFVFGVPYMAPAYLDVLQNAARHIE 231 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 +H+ NP +YWGDI ++++ TR G D Sbjct: 232 VHMYQWNPTEHYWGDIASRKDISRIRTR---------------------DGAEVSGLYDE 270 Query: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV-TPDNLLHNIQSDILELENRAVAGVN 354 G+ LLASWGK RDY+ +L D+ + E D +V P LL +Q+D+ L Sbjct: 271 GHRLLASWGKPLRDYLDVLQDVSVT-EADCYVPPAPPQTLLQRLQADVFNLRQ------- 322 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 + D S+ H+CHS REVE L+D+L+ +L+ D +L+PRDI+VM D Sbjct: 323 -------EPWPESPADDRSLQVHLCHSALREVEALYDQLMDLLQTDHSLSPRDIVVMTPD 375 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 I+ Y+P ++AVFG+ R +P++++D ++++ + L L RF + +VL LL Sbjct: 376 IEQYAPLVEAVFGAQQGARRIPWSLADLSRYSDFNLVQSVLQLFDLLPGRFTASEVLGLL 435 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 ++P + RF + EE L LRQW++E+ IRWG+D ++ + + Q +W+ G+ R+LLG Sbjct: 436 EIPAVGRRFGLDEELLSRLRQWLHEASIRWGLDAESQQAYGVDCADQFSWKAGIKRLLLG 495 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 +A+ A +Q V PY G A+ +G L+ L+ L WR +++ + ++W + Sbjct: 496 FALPDAMQMYQDVAPYPHIQGGDADSLGALSQLIDTLARWRAQISRGQTPQQWADLLHSW 555 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 +N F PD + E A+ + + Q + E A + +PL++++ +L +RLD Q F Sbjct: 556 MNDLFDPDRDEEQALQVAREAVQEWLQETQTAGFDQPLPLAVVKQDLRRRLDSPLRRQSF 615 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L G V C ++PMRSIPF+VV +LG+N +PR GFDL+++ P++GDR+RR++DR+ Sbjct: 616 LTGAVTFCAMVPMRSIPFRVVAVLGLNHDQFPRHQTQPGFDLIAEYPRKGDRARREEDRF 675 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEAL++A+ Y+SY+GRSI+DNSE PSV++ EL+D I ++ Sbjct: 676 LFLEALLAARDVFYLSYVGRSIRDNSECAPSVILSELLDTIQ-------------EQGGE 722 Query: 775 RVKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAA---SQAGKAHSEFVQPLPFTLPE 830 + H PF P + G SY EWLPA + + + LP E Sbjct: 723 AAIRRILREHPLQPFSPHYFTADGGHFSYQSEWLPALHGRHSKQEYQAFCPESLPPRERE 782 Query: 831 ------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL 884 V L++L+RF +P R F Q RL + D EPF L GL +Q+ + Sbjct: 783 PFSTDHPVELDSLRRFLRNPTRYFVQQRLNI-LLDASDLAQDREPFDLAGLHGFQVKELW 841 Query: 885 LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEID 944 L L+ E A G LP GA G I + Q+++ L ++ +EI Sbjct: 842 LQELMNAATDEEAESYLEAKGLLPGGAVGAISRKQTRQQLEALREQARELYGK-DRIEIT 900 Query: 945 LACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYC--ASGGNGESRLFLRK 1002 +G+ + G + + P GLL + S ++ + LWLEHL C + + + Sbjct: 901 PEKSGLPLRGAVAGIGPRGLLHLTTAGCSASRMLLLWLEHLALCGVTADALARPSFLVCR 960 Query: 1003 DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDS 1062 G + P+A QA L++L++ + + P+ P++ +++T + ++ + Sbjct: 961 QGVGHYRPVAQNQARQLLAELMDLLTQSENEPVRFFPKTSLKYVETKNNPRSRSEPI--- 1017 Query: 1063 TLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 L + GN GE D + +WR E V ++ P ++ Sbjct: 1018 ------NAALNCWLGNEWQPGELADAHHFLVWRFEAETLNERFVALAESIWEPALEHWEA 1071 >UniRef50_A6VQ90 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VQ90_ACTSZ Length = 1113 Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 415/1161 (35%), Positives = 609/1161 (52%), Gaps = 101/1161 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 +YHSN LDV ++ ++++ R DPF+ E ILVQS GMAQWLQ+ +++ GIAAN+ Sbjct: 5 FFIYHSNDLDVQAGILISLLQQ-RSTDPFQSETILVQSPGMAQWLQLKIAEADGIAANLR 63 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS-- 119 FP+PASFIW + LP++ ++S F K++M+W LM LL L L Y D + Sbjct: 64 FPMPASFIWQQYADNLPDVSEQSPFGKEAMTWHLMALLAILP----LPRLNEYWRDHALG 119 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-----------------VEGLGEAQ 162 ++ K +QL+ + ADLFDQYLVYRPDW+ WE G + + + Sbjct: 120 NQEKRYQLARQIADLFDQYLVYRPDWIDAWEKGDDRYIENQLRYALADNPVLLAQIKQDI 179 Query: 163 AWQAPLWKALVEYT--HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 WQ LW+ LV H P HR NL+ ++ TL + P LP R+F+ GISALP Sbjct: 180 RWQGQLWRELVAAVCRHTKDSPARHRVNLHLTYLNTLATG--RPKNLPPRIFVFGISALP 237 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 YL+ LQA+ +H ++HL F NP ++YWGD+ DP ++ +L + R DRE ++ Sbjct: 238 KAYLETLQAISRHSQVHLFFNNPSKHYWGDLADPRFIRELSLKTYREHGSDREANWLSET 297 Query: 281 ENAG------QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL 334 E + D +G+PLLA+WGKLGRD+ YLLSDL +++E A+ + +L Sbjct: 298 EKVRLKNGEFERSADDELLQIGHPLLATWGKLGRDFFYLLSDL-NAREFTAYTPLEGADL 356 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 L +++ IL L D S+ H CHSP REVEVLHD LL Sbjct: 357 LTQVKNRILNLVP------------DKQQPLQPPKADRSVVLHACHSPMREVEVLHDYLL 404 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA------------PADRYLPYAISDR 442 + D TLTP+DI+VMVADID Y+P+IQAVFG P +RY+P++ISD Sbjct: 405 RQFQADETLTPKDIVVMVADIDRYTPYIQAVFGQYQRYTEDRIGKKRPDERYIPFSISDG 464 Query: 443 RARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGI 502 + ++ +L ++SLL L +S+F +E+VLA LDVP + +F+I L +R WV I Sbjct: 465 KLSENDVLLATYLSLLDLKNSQFSAEEVLAFLDVPAIREKFEIALSDLPQIRHWVARVEI 524 Query: 503 RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVG 562 R+G+D + + + W+ GL R+LLGYAM +QG WQ L +D+S GL ++VG Sbjct: 525 RFGLD----KNCDSAVKNYNAWQAGLERLLLGYAMRESQGIWQDSLGFDDSDGLKGQVVG 580 Query: 563 HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAE 622 +LA+ L +L W L Q +E+W +L FF+ D +T I +++ Sbjct: 581 NLAAFLDRLAQWHTFLQQSHSIEKWQQNLTALLTDFFVADEQTVDIQQYIRDAVRSVTEL 640 Query: 623 GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND 682 + + + ++ + + ++L+ S +FL G V+ CTL+PMRSIPF+VVCLLGMN+ Sbjct: 641 LRSMDFQEDISAEVMAEVMTEKLNDNPNSLKFLVGKVSFCTLLPMRSIPFRVVCLLGMNE 700 Query: 683 GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742 YPR+ P FDLM ++GDRSRRDDDRYLFLEAL++AQ++LYISY+GRSI DN R Sbjct: 701 NDYPRRRTPNSFDLMRYHRRKGDRSRRDDDRYLFLEALLAAQEQLYISYVGRSITDNQPR 760 Query: 743 FPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSY 802 PSV+V +L DYI + +H F PQN+ +R ++ Sbjct: 761 QPSVVVSQLQDYINDNLA-------------DNALRLTEKVHPMTIFSPQNFYGNDR-TF 806 Query: 803 AREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 A+EWLP++ ++ + L+ L +F HPV+ FF+ +L V F+ +D Sbjct: 807 AKEWLPSSPAMPSGENKQAVLPLTEKLTRIELDQLVKFVRHPVKYFFENQLGVYFQNDDD 866 Query: 863 EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQ 922 IPDTE F L+GL Y+I L ++ R F R G LP G FG+++ Sbjct: 867 LIPDTENFTLDGLDLYRIKDDFLTY--SDEELCRYFERLSVKGILPRGNFGKVYEAKVRS 924 Query: 923 EMQQLADRVI-ACRQPGQSMEIDLACNGVQITGWLPQVQPD----GLLRWRPSLLSVAQG 977 EM+ ++V Q Q+ I+L +GV+ITG L + D + WR LS G Sbjct: 925 EMETFREKVRDYLLQTPQTQAIELDIDGVKITGNLTALYGDSPDKRRIAWRVGNLSDGFG 984 Query: 978 MQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 ++ W+ HL CA+G S L + +D +AAE+A L + Y M+ + Sbjct: 985 LENWVYHLAKCATGE-VTSSLMITRDKSVTLAAIAAERATAQLGVYVRAYLCAMNRIQCI 1043 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQL 1097 A LK + + R A RG D +++RL L Sbjct: 1044 PTMKITALLKCR-------------SADELRRLLDNAARPTDYNRG---DPYWRRLLLNL 1087 Query: 1098 TPETMEAIVEQSQRFLLPLFR 1118 + ++ + L Sbjct: 1088 DDGELTDVLPTLTDWFAMLVD 1108 >UniRef50_B8FB93 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB93_DESAA Length = 1085 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 331/1131 (29%), Positives = 544/1131 (48%), Gaps = 81/1131 (7%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 LRVY SN L L + ++ ++ L P E E++L Q+ M +WL + L++ G AN+ Sbjct: 15 LRVYSSNSLQTLARQLADLLVKDPLP-PLEQEIVLTQNPVMGRWLYLELAKINGACANLR 73 Query: 62 FPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 LP +++ ++F V+P E ++S F+ +M+W++M L + +E FT ++ YL DD Sbjct: 74 VTLPNAYMHELFASVIPPMENEEQSPFSPWAMTWRIMDALARFMEEPPFTEIQRYLQDDP 133 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 D RK F LS + A +FD Y+++RP+ + W+ G WQA LW+ + + Sbjct: 134 DGRKQFGLSRRIAGVFDGYMLFRPEMILNWDHGKGG-------HWQAILWREISQ----- 181 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 G HR L F + L S + P LP R+ + G+ +PP +L +G+ + ++L Sbjct: 182 GFNDRHRPGLRTDFFKALRSGKSRPGVLPKRISLFGVWGMPPFHLDVFSGVGRMLPVYLF 241 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 NPC+ YW + ++ TR + + + GN L Sbjct: 242 HVNPCKEYWAHAFSDKQITRITTR-------------------SPFTRPEELYLEKGNAL 282 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 LAS G +GRD++ L++ L+ + + LL IQ +ILE + E+ Sbjct: 283 LASLGGVGRDFLGLVAGLD-CHPQELYESPDRTALLGMIQGEILEFKE--------EDGR 333 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 ++ K P D S+ H CHSP RE+EVL+D +L L+EDP L P+DI+VM D+D ++ Sbjct: 334 KTQEKARPLPGDRSLAIHNCHSPMREMEVLYDHILKFLDEDPDLDPQDIMVMAPDMDKFA 393 Query: 420 PFIQAVFGSA-PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 P+++AVF S P LPY I+ + R P + AF+ + L SRF + VL L +P Sbjct: 394 PYVEAVFASPGPGGIRLPYCIAHKEVRTVSPSVNAFLEIFDLCQSRFEAAAVLDLAGLPA 453 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 +A +F +E+ L L +W+ ++ +RWG + D+ + L LPATG +TW GL R++LGYAM Sbjct: 454 VAEKFGFSEQDLETLARWIAQTRVRWGANADSRKALGLPATGDNTWESGLDRLMLGYAMA 513 Query: 539 S-AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 + +Q++ P+ + + A L+G A L R L + ++EW+ + ++ Sbjct: 514 GLDEEFFQNISPFGDLAMEDAPLLGRFAEFTEALFQLSRKLEKSHEIQEWVKILEGVVQE 573 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 F PDAE + + YG V ++++ +A L+Q S L Sbjct: 574 FLSPDAEDLHLLQI---ALSKTAKAQSEQGYGREVAAAVVKAAVAGLLEQSSPSGSILRR 630 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 VN C++ IP KV+CL+GM+DG +PRQ +GFD M++ P+RGDRS R DDR+ FL Sbjct: 631 GVNFCSIAQGAGIPAKVICLVGMDDGAFPRQDGGMGFDYMARSPRRGDRSPRGDDRFSFL 690 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 +A+I+AQ +L+IS+ G+ IQDN+ PS LV ELIDY+ L Sbjct: 691 QAIINAQSRLHISFTGQGIQDNAALCPSPLVSELIDYVEAGFDLSDSGP----------- 739 Query: 778 AHLTCLHTRMPFDPQNYQP--GERQSYAREWLPAA----SQAGKAHSEFVQPL--PFTLP 829 L +H PF P + S++R++ AA ++ F QPL P Sbjct: 740 --LVVVHKLQPFSPDYFSGQCPGLFSFSRQYSQAADILQRGEKQSRQFFSQPLEEPEAQD 797 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 +++ LE L F+ P ++ + R+ V + E F L GL R+ + +++ V Sbjct: 798 KSISLEALCAFFRMPPKSILRDRVGVFLDAYTEAMDSAEAFSLGGLERHVLAGKMVEKRV 857 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG-QSMEIDLACN 948 + + L+ +A G+LP+G G + ++ A + A Q ++ D+ Sbjct: 858 QGRSSLDLYALAKAQGELPHGNVGAFAFNQLENQISPFARKAEAMLSEANQRLDADVMAG 917 Query: 949 GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGE-SRLFLRKDGEWR 1007 +I G L + P GL+ +R + + W+ HL CA E LF D + Sbjct: 918 EWKIHGRLSPLGPWGLILYRTASAKAYDRLNAWIRHLFLCAVRPGFENKSLFAGTDAVYY 977 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 + + A+ L+ L E Y +GM P PE+ A+ ++ + + +A Sbjct: 978 YDNVKQNAAVTRLAALAEVYDKGMEFPAPFFPETSFAYAQSMFKTDDVG---------QA 1028 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + + RGE D + + L P + + P+ Sbjct: 1029 MKAARNKWGPDFYGRGEALDSYAALCFEGLDP-LSREFRDLAVEVYAPMLE 1078 >UniRef50_C5S7Q0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7Q0_CHRVI Length = 1200 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 392/1217 (32%), Positives = 568/1217 (46%), Gaps = 140/1217 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------- 53 + NRL+ L L+ + R L P E E ILVQS G+AQWL++ L+ Sbjct: 16 FMLIQGNRLEELRGLLVAWMHRHPLA-PLENETILVQSNGIAQWLKLALAATPTSDDRDA 74 Query: 54 ----FGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLER---- 105 GIAA +D LPA FIW ++ VL ++P+ S F+K ++W+L LL +L Sbjct: 75 ITGGQGIAAALDVMLPARFIWRVYRAVLGDLPETSPFDKAPLTWRLYRLLERLTGVAPLQ 134 Query: 106 ------EDFTLLRHYLTDDSDK---RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVE 156 + LR +L D + R+ +QL+ + ADLFDQY VYR DWL W G V Sbjct: 135 SSDTRFDALDPLRGFLAVDGQEAAPRRRYQLAERLADLFDQYQVYRADWLEAWSQGRDVL 194 Query: 157 GLGEAQA--------WQAPLWKALVEYTH------QLGQPRWHRANLYQRFIETLESATT 202 + WQ LW+AL RA +++ F+E + Sbjct: 195 IRPNGERRSIPVGQDWQPVLWRALQADVDAEHGPDDPPLRHASRAEVHRVFLERTRAGQD 254 Query: 203 CPP---------GLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKD 253 P LP RV + G+S+LP L+AL+A+ ++ L NPCR+YWGDI + Sbjct: 255 ADPTRIAALRSVELPRRVIVFGLSSLPRQMLEALEAIAPVCQVMLFVLNPCRHYWGDIIE 314 Query: 254 PAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYL 313 L + R++ + + + G+PLLA+WGK GRDYI L Sbjct: 315 GRDLFRHPYRRQT-------------ARKVPENLDESRLHLNGHPLLAAWGKQGRDYIRL 361 Query: 314 LSDLESSQE--------------LDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 L + + + +D F +LLH +Q DILEL Sbjct: 362 LDEQDERRRYEAYFQGLTARDQGIDLFASPGTGSLLHQLQDDILELRPLHERQDQRTVID 421 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE----DPTLTPRDIIVMVADI 415 D S+ F V HSPQRE+E+LHDRLL E D L PR+++VMV DI Sbjct: 422 --------PEHDRSLEFIVAHSPQREIEILHDRLLDAFERSARTDRPLQPREVLVMVPDI 473 Query: 416 DSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLAL 473 ++P IQAVFG R +P+ I+D+ R +P++ LL+LP +RF ++L L Sbjct: 474 AVHAPHIQAVFGRFDPDDRRAIPFQITDQGQRHRNPLVIGLEHLLNLPRARFAVSELLDL 533 Query: 474 LDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA-TGQHTWRFGLTRML 532 LD+P L RF + E L LR W+ + +RWG+D L LP Q+TWRFGL R+L Sbjct: 534 LDIPALRTRFSLDEPDLPRLRLWIAGANVRWGLDAAQRASLGLPEGLEQNTWRFGLRRLL 593 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCR 592 LG+A A G W+ + P+DE GL A L+G LA LL +L + + L + R W + Sbjct: 594 LGFASGDA-GPWRDIEPHDEVGGLEAALLGPLAQLLERLEAYWQCLTEPRTPAGWSALIS 652 Query: 593 DMLNAFFLPDAETEA-AMTLIEQQWQAIIAEGLGAQ-YGDAVPLSLLRDELAQRLDQERI 650 +L+ FF+ +E++ + I + A A+ + + + L ++RD L RLD+ + Sbjct: 653 ALLDDFFMETSESDGVTLARILLELDAWEADCVQGGLGAEPIALEIVRDSLLARLDRPSL 712 Query: 651 SQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD 710 +QRFL G VN TLMPMR+IPF+ + LLGMNDG YPR+ P FDLM+ + GDRSRR+ Sbjct: 713 TQRFLGGAVNFATLMPMRAIPFRQIWLLGMNDGDYPRRRVPADFDLMAGDYRPGDRSRRE 772 Query: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 DDRYLFLEAL+SA++KL I ++GR I+DNSER PSVLV +L D++ P Sbjct: 773 DDRYLFLEALLSAREKLVIGWVGRGIRDNSERPPSVLVGQLRDHLAAGWRRPDG------ 826 Query: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGE---RQSYAREWLPAASQAGKAHSEFVQPLPFT 827 AR+ A LT +H PF ++PG +YAREW AG + P+ Sbjct: 827 -DGARLLAALTSVHPLQPFGRGYFEPGRAKTLFTYAREWRAVHDGAGTTEVSAERLAPWL 885 Query: 828 LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 V L+ LQ F P+ A F RL++ E PD E F L+GL +QI +L++ Sbjct: 886 PETPVDLDQLQGFLRDPIMALFDQRLRIKAPGEVVAPPDVETFALDGLGDWQIKDELISR 945 Query: 888 LVE--------QDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ 939 E + + RF+A G LP G+ GE T + L A Sbjct: 946 TFEPGLDRPALEQRLQAGIARFQAQGRLPDGSLGERLGRTVIAYLPVLHAAWDAALSEWP 1005 Query: 940 S---------MEIDLACNGVQITGWLPQVQP-----DGLLRWRPSLLSVAQG-----MQL 980 +E+++ + + L ++ ++ L ++ Sbjct: 1006 RRLDRPIPVMVEVNVPAGRLVLEDVLSDLREGDDGRGQIILQTSGLTKDKHYQWRNTLRA 1065 Query: 981 WLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPE 1040 W+ HL G +RL G+ R P+ ++A L L+ + EGM PL V Sbjct: 1066 WVRHLAAQLDGEPVTTRLL-TPSGDARLEPVPVDEARERLEALLVVWWEGMQRPLPVALN 1124 Query: 1041 SGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPE 1100 +G AWL D KA LQA++ + + + R + Sbjct: 1125 AGMAWLDK--DGPETLEDGTAPEELKAWNAALQAFDLDHTY-----NAYVGRCYDSFEAL 1177 Query: 1101 TME-AIVEQSQRFLLPL 1116 + R L Sbjct: 1178 WSGVEFARWAHRLYGGL 1194 >UniRef50_B0BTG3 Exodeoxyribonuclease V, gamma subunit n=8 Tax=Pasteurellaceae RepID=B0BTG3_ACTPJ Length = 1114 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 382/1156 (33%), Positives = 598/1156 (51%), Gaps = 92/1156 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M V+ S +L L AL+ + + + +PFEPE +LVQS GMAQWLQM ++ + G+AA+ Sbjct: 1 MFTVFFSQKLSSLAALLIRLQQNDPNPNPFEPETVLVQSVGMAQWLQMQIADQTGVAAHY 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FP P SF+W + + PE+PKE+ F ++S++W+LM L+P+ LE+ +F L YL D+ Sbjct: 61 QFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEKAEFESLNLYLNKDAR 120 Query: 121 K--RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE-----------------A 161 + KL+QL+ K ADLFDQYLVYRP WL WE+ + L E Sbjct: 121 QYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNERDILAN 180 Query: 162 QAWQAPLWKALVEYTHQLGQPR----WHRANLYQRFIETLESATT-CPPGLPSRVFICGI 216 WQ+ LW AL+E HRA L Q++ E L++ T LP R+F+ GI Sbjct: 181 LRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPKRIFVFGI 240 Query: 217 SALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL 276 S+LP L L+ L +H E++L F +P + YW + + L KL +++ Sbjct: 241 SSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ------- 293 Query: 277 FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLH 336 + GN LLA WGK GR+++ L + E ++ F + D+ L Sbjct: 294 ----------DLDALLAEQGNQLLAMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLI 343 Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 +++ IL ++ + L D SI H CHS REVEVLH++LL M Sbjct: 344 KLKNAILN--------------FNNEQRFGLAEQDRSIQIHACHSVMREVEVLHNQLLQM 389 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPVLEAF 454 E +PTL P+DIIVM ADID Y+P+I AVF RY+P+ +SD++ P++ +F Sbjct: 390 FERNPTLAPKDIIVMSADIDKYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASF 449 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 + LL+L +S F +E +L LLDV L RF++ E+ L+ LR WVN+ GIR+G+ Sbjct: 450 LMLLNLKESDFSAESLLDLLDVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQ---- 505 Query: 515 ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 + W GLTR+LLG ++++ G WQ + ++ES GL A LVG LA + L W Sbjct: 506 -DDWQNHNAWENGLTRLLLGTSLKAESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAW 564 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 + Q+ LEEW + ++ F+ E+ A+ L+ + + + A++ +++ + Sbjct: 565 YEFIQQDHTLEEWKARIQKLIGEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGI 624 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 ++R L +L+Q++ S +FLAG VN CTL+PMR+IPFKVVCLLGMN+ +PRQ + F Sbjct: 625 EIIRLLLEDKLNQQQSSLQFLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF 684 Query: 695 DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 DLM PKRGDR+RRDDDRYLFLEAL+SAQ+ Y+SYIG+S DN +R PSVLV +L+DY Sbjct: 685 DLMQYAPKRGDRARRDDDRYLFLEALLSAQEIFYLSYIGQSTTDNKQRLPSVLVSQLLDY 744 Query: 755 IGQSHYLPGDEALNCDESEARVK--AHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ 812 + + + +S + + F P+N+ P + SY +EWL Q Sbjct: 745 LAEHLTEQARLQASEKDSFSEALFWQKMVVQQPLTVFSPKNFTP-QYGSYDKEWL--LEQ 801 Query: 813 AGKAHSEFVQP---LPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 + ++F+ L +P + LE L F ++P++ FF +L V FR ++ I ++E Sbjct: 802 QHEPLADFLNKSFDLKAEIPTEINLEDLIAFVSNPIKYFFNHQLGVYFRNDEESIAESEK 861 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L L YQ+ QL+ +E + E F++ + G+LP F ++ + + +L + Sbjct: 862 FSLSDLDDYQLRDQLVT--LEPAEREAFFKQEQLKGNLPIANFAKVSLQDLDDSINELRE 919 Query: 930 RVIACRQPGQSMEIDLACN----GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 ++ +EI+ +++ G + D ++ W+ S L ++LW+ +L Sbjct: 920 LILPYLGESDILEIERLFEVEQLKIRLFGNIRNKFADEIVFWKVSSLKDKDYIRLWIYYL 979 Query: 986 VYCASGGNGESRLFLRKDGE---WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESG 1042 + A G N E R + +RF ++AEQA L I Y L Sbjct: 980 LIQAQGLNLELTAIARSKEKAEIFRFNQVSAEQAFSQLQTYISAYVTSFRQ----LTWGI 1035 Query: 1043 GAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETM 1102 L ++ +D + Q+ + Y + + QR+ +Q + Sbjct: 1036 WTDLDNYFEKLSDKQNVAEYCQQQLSALMDKQYF---------EKSYLQRVLQQSSQLDY 1086 Query: 1103 EAIVEQSQRFLLPLFR 1118 I + + + + Sbjct: 1087 AQIHTVTLEWFELMQQ 1102 >UniRef50_Q0VNI2 Exodeoxyribonuclease V gamma chain n=3 Tax=Gammaproteobacteria RepID=Q0VNI2_ALCBS Length = 1138 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 406/1183 (34%), Positives = 564/1183 (47%), Gaps = 120/1183 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L V H NRL+ L L+ ++RE L P E E LVQS GMAQWL++ L+ GI+A Sbjct: 5 LMVLHGNRLETLTELVADWLQREPLS-PLETETFLVQSNGMAQWLKLQLADALGISAGFQ 63 Query: 62 FPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 F +PA F+W + VL E +P+ S F+K + W+L LLP LL E F LRH+L DD Sbjct: 64 FQMPARFLWGAYRTVLGEDQVPRTSPFDKSRLLWRLYRLLPTLLNSEHFGPLRHFLADDV 123 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL----------VEGLGEAQAWQAPLW 169 D RK QL+ + ADLFD Y +YR DWL WE G+ + +Q WQA LW Sbjct: 124 DGRKRHQLAERLADLFDAYQMYRADWLDDWENGNDRLRKTQDRDTFDDFPASQLWQAHLW 183 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETL---ESATTCPPGLPSRVFICGISALPPVYLQA 226 +AL+ Q R+ +++ F+ L + T PP LP R+ I GISALP L+A Sbjct: 184 RALLADMDDSKQG-LSRSAIHRDFMAALTQQQEQGTPPPRLPRRLIIFGISALPQQALEA 242 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L AL +H +I +L NPC++YW DI + L + R+ Sbjct: 243 LAALSQHCQILMLVQNPCQHYWADIVEDKQLLRRQLDNRKRHLTALPENRV--------- 293 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELE 346 NPLLA+WGK GRD+I LL D + PD+ Q+ I E Sbjct: 294 ----------NPLLAAWGKQGRDFIGLLYDHD-----------DPDSYRSAFQNQIDLFE 332 Query: 347 NRAVA--------GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 NR + E N+R +DSS+ F + HS QREVE+L D LL Sbjct: 333 NREPHTLLQQLQQDILDLEPLPEPNRRLPLEMDSSLQFRIGHSAQREVEILQDELLDRFS 392 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEAFIS 456 DPTL PRD+IVMV DI++Y+P I AVFG RYLPY +SDR A + P+ +A S Sbjct: 393 NDPTLQPRDVIVMVPDIEAYAPHIDAVFGRLERDDPRYLPYTLSDRSAGAASPLAQAVES 452 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL LP RF + D+L LLDVP + RF I E L L +W++++ IRWG++ + L++ Sbjct: 453 LLHLPQWRFTATDILDLLDVPAVRERFGIDEGDLPQLARWIDQARIRWGLNSPQRKTLDV 512 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 P Q++W FGL RML GY + W + P DE +GL AEL G L+ LL L + Sbjct: 513 PGFEQNSWAFGLKRMLAGYLLGDGPA-WMGIEPLDEVAGLGAELAGRLSRLLDTLEQHWQ 571 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL-IEQQWQAIIAEGLGAQYGDAVPLS 635 + +W +L+ F P E + + + +A A + +PL+ Sbjct: 572 QSRTDASARQWQQRFTQLLDDLFAPVDEADQTLDAGLRDALNDWLAACAEADFDSLLPLT 631 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 + R L L+ E +SQRF+AG +NICTLMPMR+IPF+ VCLLGM DG YPRQ P+ FD Sbjct: 632 VARRPLLDALNAESMSQRFMAGRINICTLMPMRAIPFRHVCLLGMKDGDYPRQQQPMDFD 691 Query: 696 LMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 LM Q + GDRSRRDDDRYLFLEAL+SA+ LYIS+ GR+++DNSER PSVLV +L D Sbjct: 692 LMRQWGNYRPGDRSRRDDDRYLFLEALLSARDSLYISWTGRNVRDNSERPPSVLVAQLRD 751 Query: 754 YIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY------------QPGERQS 801 +I Q + E ++ LT H PF + + + Sbjct: 752 HINQRWHTDQGEPVD----------ALTVSHPLQPFSARYFYSANDASAANNADAHILHT 801 Query: 802 YAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 YA EW + P E + L RF PV FF+ RL+ + + Sbjct: 802 YANEWRALHEEQTHRVDNDQPLPPLENNEPISCAALGRFLKQPVAHFFEQRLKARLKQQR 861 Query: 862 SEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER------LFRRFRAAGDLPYGAFGEI 915 + D+EPF +GL R+Q+ QLLN + R +GDLP F E Sbjct: 862 QVLDDSEPFSFDGLQRFQLQDQLLNEALRAGPEHANDAMRVAMDRLAGSGDLPLAPFDEG 921 Query: 916 FWETQCQEMQQLADRVIACRQPGQSM----EIDLACNGVQITGWLPQVQPD----GLLRW 967 ++ + Q + ++ EI L +QI WL ++ L Sbjct: 922 NRDSLLLPLAQPLEHYFTLLADSGTLQPQQEIRLTAGPLQIEDWLTDLRGSSANAQRLVL 981 Query: 968 RPSLLSVA--QGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 L + + W HL CA+G + +DG + P + A L QL Sbjct: 982 HTGKLKERFDKLTRDWTLHLAACAAG-LPLTTHIQGQDGRFSLPHIHRSDAQQCLDQLGY 1040 Query: 1026 GYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEG 1085 +++ + PL V + AWLK + + +E M GE Sbjct: 1041 AWQKALCEPLPVACATAFAWLK-------------GEEKDNGENEARKVFESGFMHTGEQ 1087 Query: 1086 D-DIWYQRLWRQLTPET------MEAIVEQSQRFLLPLFRFNQ 1121 + + R W A +++ PL++ Q Sbjct: 1088 EKEPAIARAWADFDTLLAASHGDANAFEYWTEQLYAPLYQHAQ 1130 >UniRef50_A4VRQ6 Exodeoxyribonuclease V gamma chain n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VRQ6_PSEU5 Length = 1092 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 382/1141 (33%), Positives = 565/1141 (49%), Gaps = 84/1141 (7%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +YH+ L+ L + + + L DPF P ++V S GM +WL + L+++ GIA + Sbjct: 1 MLSLYHAPDLETLGE-LATTLLAQPLADPFAPARVVVPSQGMGRWLTLELARRQGIAMQL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 + LPA+F+WD+ VL +P++SAF+ +++W+L L + E L YL D D Sbjct: 60 ELQLPAAFVWDLSRTVLGSLPEQSAFSPTTLTWRLYGWLCEPANLELAPRLAQYL-DGGD 118 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 +R+ L++K AD+FDQYL+YR DWLA WE G ++ LG +AWQA LW+ L + H Sbjct: 119 ERRRLSLAAKIADVFDQYLLYRDDWLAAWERGETLD-LGPDEAWQALLWRELTKDGHP-- 175 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 HRA L ++ L P LP R+ + GIS+LPP +L+ L L +HI++ + Sbjct: 176 ----HRARLLGDLLQRLYR-DEPLPDLPERLLVFGISSLPPHHLRVLDGLARHIDVVVCA 230 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NP R WG+I+D LA+ + D DVG+PLL Sbjct: 231 LNPSREAWGEIRDIRELARQ-----------------------PESGVDDWYLDVGHPLL 267 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAF------VDVTPDNLLHNIQSDILELENRAVAGVN 354 AS GK GRD+ L L +S+ F D+ D+LLH +Q+DIL L R Sbjct: 268 ASLGKQGRDFFDSLFSLTASEGSQEFGLYSEDEDLHDDSLLHALQNDILRLRTRLP---- 323 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 D + L D S+ H+ HSP REVE+LHD+LLA DP LTP ++V+ D Sbjct: 324 -------DERISLAENDRSLEVHIAHSPLREVEILHDQLLARFAADPALTPDQVVVLTPD 376 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 I+ Y+PFI+AVF +PY+++DR R P++EAF+ LL L SRF +E++LA L Sbjct: 377 IERYAPFIEAVFAPREGSPRIPYSLADRSLRAEVPLIEAFLELLLLAQSRFAAEEILAWL 436 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 + P +A R I E L LR W+ E+G+RWG D + L LPA TWR GL R+LLG Sbjct: 437 EQPAIARRAGIESEDLPLLRDWLREAGVRWGRDGEQRARLGLPAEPAFTWRQGLDRLLLG 496 Query: 535 YAME-----SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 +A P D G +L+G L + +L LA+ RPL EW Sbjct: 497 FAAPPQLAGDRAPLLGEHWPLDALEGARGQLLGRLVGFVERLGSLADQLARPRPLAEWAD 556 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 + +++ F + E + L+ Q A+ + A + L L+ +L+ L Q Sbjct: 557 DLQVLIDTLFD-EREAGETLLLLSQACAALRDQAQAADLTRPIELELVHQQLSAALQQGG 615 Query: 650 ISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRR 709 + FL G V CT++PMRS+PF+VVCLLG++DG +PR+ P GFDL+ + P+RGDR+RR Sbjct: 616 GASGFLTGAVTFCTMVPMRSLPFRVVCLLGLDDGAFPRRTPPSGFDLIGRHPRRGDRARR 675 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 DDRYL LE L+SA+Q LY+SY+GR +DN+ PSVL+ E+++ + + L Sbjct: 676 LDDRYLLLETLLSARQALYLSYVGRDPRDNAVLPPSVLLSEVLEAVDMTAVLA------- 728 Query: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 + V + H PF P+N+ Y+ W AA + + QP L Sbjct: 729 -DGARPVSQKILIAHPLQPFSPRNFGEAPCAGYSLPWFRAAQRLAEPPQAQAQPFASLLA 787 Query: 830 ET------VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQ 883 E + L + + HP R + RL + + + EPF LE + + + Sbjct: 788 EPDEAWLTIEPSQLLQCFRHPARFLLEQRLGLRLADDQESLASDEPFDLEMPAWNGLRRL 847 Query: 884 LLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP--GQSM 941 L A+ ++ E R AAG LP G G+ W ++ A R+ R + + Sbjct: 848 SLQAMEQRWSDEEERRMACAAGWLPTGELGQALWGKLRGPVRAFAPRLFELRPDAVPEPL 907 Query: 942 EIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV--YCASGGNGESRLF 999 +D+ GV++ GWL V P GL W+ L WL HL+ CA+ G L Sbjct: 908 PVDINLAGVRVHGWLDGVTPGGLFGWKLGRLGEWDLPPFWLRHLLLNLCATPGIERHSLM 967 Query: 1000 LRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLD 1059 L G+W+ PLA A L + YR + PL +LP S A+ + + Sbjct: 968 LSPAGDWQLGPLA--NAAELLEPWLVAYRSAIREPLPLLPRSSQAFARGYRKPSRGS--- 1022 Query: 1060 DDSTLQKARTKFLQAYEGNMMVR--GEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 L AR + +A+ G E +D W +R P E +++ + P Sbjct: 1023 --EPLDCARKRAREAWFGAEFSPIAAEAEDPWNALAFRDSDP-LDERFETLAEQLIGPAL 1079 Query: 1118 R 1118 Sbjct: 1080 D 1080 >UniRef50_Q1N2R1 Exonuclease V gamma subunit n=1 Tax=Bermanella marisrubri RepID=Q1N2R1_9GAMM Length = 1101 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 355/1153 (30%), Positives = 550/1153 (47%), Gaps = 101/1153 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML VY SNR++ L + +V + P +P+ I+V++ G+A WL+M L+Q GIAANI Sbjct: 1 MLNVYQSNRMEGLLGQLIKLVLQSD-SSPLQPKTIVVENPGLAHWLKMQLAQTLGIAANI 59 Query: 61 DFPLPASFIWDMFVRVLPEIPK----ESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHY 114 FP+P+ F W + ++ + + ES FNK ++W + +L + +L+R F LL Y Sbjct: 60 QFPMPSRFFWQLQRDLVSDSQEAWQTESIFNKDPLTWFVFDVLSESQILQRPGFELLADY 119 Query: 115 LTDDSDK-RKLFQLSSKAADLFDQYLVYRPDWLAQWETG--HLVEGLGEAQAWQAPLWKA 171 + D D+ +L+QLS++ AD++DQYLVYRPDW+ WE + E WQA LW+ Sbjct: 120 VKDSDDESLRLYQLSTRIADIYDQYLVYRPDWIKSWEQQTFAIDGQPLEEARWQAELWQI 179 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 L + G P HRA+L + F+ L++A + LP V G S LP +++L L Sbjct: 180 LRQEAISRGFPLHHRASLTEDFLHLLQTAESIES-LPKDVIFFGFSTLPKNQIESLALLS 238 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 H ++HLL NP + YWGDI D A+L R + D Sbjct: 239 SHCDVHLLTPNPSQTYWGDILDERLQARLRLRGKSVPMAD-------------------- 278 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVA 351 GN LLAS G++G++Y LL DL+ +E D FVD +LL IQ+ IL L+ + Sbjct: 279 ---SGNALLASLGRMGQEYQRLLLDLDVYEEHDLFVDADDQSLLGRIQNQILHLQQSSSQ 335 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVM 411 ++P D SI CHS REVEVLHD L L + + P+DI+VM Sbjct: 336 ------------PEHIEPNDDSIKIVGCHSAMREVEVLHDH-LLDLLQQSDVDPQDIVVM 382 Query: 412 VADIDSYSPFIQAVF-----GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 + D+ Y+P+I AVF +PY+ISDR ++ HP++ FI LL++P SR Sbjct: 383 IPDVARYAPYIDAVFQGGVDNRQGDRVRIPYSISDRPIQEEHPLINGFIQLLNMPKSRMS 442 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 +V+ALL++P + +FD+ E+ L ++QW+ + IRWG D+ + + LP Q+TW Sbjct: 443 YSEVIALLEIPAVYRKFDLDEKQLHQVKQWLELAAIRWGYDETHRSKQGLPKWQQNTWLH 502 Query: 527 GLTRMLLGYAMESA----QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 G R+L+GYA + P + GL A +G + + + +L + Sbjct: 503 GFQRLLMGYAFSERLAPNDELPFDISPVENVEGLEAASLGPVMNFVNELYEFVLATENLH 562 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 EW +D L FF E + + I Q + + + +P S++ + Sbjct: 563 SCTEWRYFLQDSLQRFFDVTTEEQPVLEQIHQVLENWLQTSQYVNFSHDIPFSVVYQGVQ 622 Query: 643 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 Q L + SQ F+ G VN CTL+PMRSIPFK V +LG+ND YPR + DLM + Sbjct: 623 QGLQKNNGSQHFMIGRVNFCTLLPMRSIPFKYVAVLGLNDQEYPRTVPGNSLDLMRFNRR 682 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 GDR+RRD+DRYLFLEA++SA+Q L++SY + N+ PSV++ E +DY+ + + Sbjct: 683 VGDRNRRDEDRYLFLEAILSARQGLWLSYRSLDQKQNTPMTPSVVLAEFMDYLDINFF-- 740 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG-ERQSYAREWLPA------------ 809 E+ L H F+ Q + G + SY W + Sbjct: 741 --------SGESAASQILFTQHPLQAFNRQYFIAGSKLHSYQTNWFKSIYQLQSDANQTF 792 Query: 810 ASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 + GK+ + V L TL RF+ P RAF +L + F D EP Sbjct: 793 QEEKGKSSVPVLSQPNGINMLEVGLSTLVRFFQLPARAFLNQQLNIQFHNLADMHEDEEP 852 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD 929 F L GL RY +L ++ + R LP+G GE W+ Q ++ + Sbjct: 853 FELSGLDRYAAKDYILQQTIQGRSIDPR----RLQPWLPFGKIGERHWQRTRQSVEDVLA 908 Query: 930 RVIACRQPGQ--SMEIDLACN-----GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWL 982 + + +EI+LAC + GW+ +V L+ + + ++L + Sbjct: 909 EATSMGLENKEGPLEINLACEYQNGQNTSLVGWINEVYQGRLVLLKVAKFQAKHLIELLI 968 Query: 983 EHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESG 1042 E A G S + +D P++A +A YL++L+ Y + PL +PE+ Sbjct: 969 ESAALNAQG-YNYSGCLVTQDIRINVKPMSASEAKSYLNKLLSYYFSHQNQPLNFMPETA 1027 Query: 1043 GAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETM 1102 A + D QKA +F++ + + E D Y R + ++ Sbjct: 1028 WALY--------NPTTKQDLRSQKALQRFVEVNDYSYYDP-ERLDPHYHRCFGNVS-ILP 1077 Query: 1103 EAIVEQSQRFLLP 1115 E ++E + P Sbjct: 1078 EQLIEVAHDLFEP 1090 >UniRef50_C1D6T7 RecC n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T7_LARHH Length = 1159 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 398/1194 (33%), Positives = 547/1194 (45%), Gaps = 129/1194 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-FGIAANI 60 + H+NR ++L ++ + R+ L P + E+ LVQS GMAQWL+ L++ GIAA + Sbjct: 7 FTILHANRAEMLRDVILAWLARDPLSSPLDDEVFLVQSQGMAQWLKHALAESPAGIAAAL 66 Query: 61 DFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 DF LP F+W + VL E +P +S F+K +SW+L LP L F L ++ D Sbjct: 67 DFQLPQGFLWRCYRAVLGEDSVPAQSPFDKAPLSWRLYRELPAWLHEPVFAPLARFVEAD 126 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV-------EGLGEAQAWQAPLWKA 171 +D R+L+QL+ + ADL+DQY YR DWL WE GH L E + WQA LW+ Sbjct: 127 ADPRRLYQLAHQLADLYDQYQSYRADWLTGWENGHDDITRHGRPAPLPEGERWQAELWRR 186 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 L HRA ++QRF+ L T P LP RV + G+SALP L+AL A+ Sbjct: 187 LAGQL--ASARHTHRAAVHQRFVAALREGTPPPGSLPERVVVFGLSALPQQTLEALDAIS 244 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 +H + + NPCRYYWGDI + + QR L + Sbjct: 245 RHSHVLMAVNNPCRYYWGDIVEGREWLRRQAEQRHRRRSGMPAAL-----------DDST 293 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQ--------ELDAFVDVTPDN---LLHNIQS 340 +PLLASWG+ GRD+I LL+D + Q ++D F + P LL +Q Sbjct: 294 LHLHAHPLLASWGRQGRDFIALLADYDRWQSAAATHAQDIDLFDEAVPAGTLPLLQQVQQ 353 Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 +LELE L D SI FHV HSP REVE+LHD+LLAM ++ Sbjct: 354 AVLELEPL------------PAEPHRLPLPDHSIAFHVAHSPLREVEILHDQLLAMFDDP 401 Query: 401 P-TLTPRDIIVMVADIDSYSPFIQAVFGSAPADR--YLPYAISDRRARQSHPVLEAFISL 457 L PRD++VMV DI SY+PFI+AVFG P D ++P+A+SD+ A + P+L A L Sbjct: 402 ELALKPRDVMVMVPDISSYAPFIRAVFGKLPPDHPRFIPFALSDQSAVSTEPLLRALQQL 461 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L LP R +VL LLDV + RF + E L L +W+ SGIRWG+ EL +P Sbjct: 462 LDLPALRLTVSEVLELLDVAAMRRRFRLRETDLPLLTRWIEGSGIRWGLSAAQRAELGMP 521 Query: 518 AT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 Q++W FGL RMLLGYA + WQ + PYDE G+ A L G LA LL L WR+ Sbjct: 522 DDFDQNSWHFGLDRMLLGYACGAGAS-WQGMAPYDEVGGMDAALAGQLADLLSTLAHWRQ 580 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLP-DAETEAAMTLIEQQWQAIIAEGLGAQY-GDAVPL 634 L + W + A D I +A G +PL Sbjct: 581 CLQEPATPAGWQARIAALAEACLDIKDEHDLLLYAGIADTLDNWVATLDGNGLADTRLPL 640 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 ++RD L +L +S RFL G VN TLMPMR+IPFKV+CLLG+NDG YPR F Sbjct: 641 EVVRDVLLGQLADTSVSMRFLGGAVNFGTLMPMRAIPFKVICLLGLNDGDYPRSQNRADF 700 Query: 695 DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 DLM+Q + GDRSRRDDDRYL LEAL+SA+++ Y+S++G+S +DN R PSVLV++L DY Sbjct: 701 DLMAQDYRPGDRSRRDDDRYLLLEALLSARRRFYLSWVGKSPRDNRPRPPSVLVEQLRDY 760 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ----------PGERQSYAR 804 + L + + + A LT H PF P+ + +Y Sbjct: 761 LAAGWQ---AAPLGTEPATTGLLAALTTEHPLQPFSPRYFSRAPDARPQPDQPPLFTYDS 817 Query: 805 EWLPAASQAGKAHSEFVQPLPFTL--PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 +W TL RF P F RL+V F D Sbjct: 818 DWRAIHDATDPPAEPAAALPLPLPDWDGRTDAVTLARFLRQPAATFLHGRLKVRFGELDE 877 Query: 863 EIPDTEPFILEGLSRYQINQQLLNA------LVEQDDAERLFRRFRAAGDLPYGAFGEIF 916 D EPF L+ L+ +Q+ +LL A + R G LP+GA G Sbjct: 878 LAED-EPFALDPLATHQLKSRLLEAVRDVPEAETGRHWQAAATRLTEEGGLPFGAAGAQL 936 Query: 917 WETQCQEMQQLADRVI-----------------ACRQPGQSMEIDLACNGVQI------- 952 + + L Q+ + C+G+Q Sbjct: 937 LQACHAPVMALRQNWHRLDDLTDLPPLTLPPLLLPLAGDQTATLLAHCDGLQAVAADSPP 996 Query: 953 -------TGWLPQVQPDGL-LRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG 1004 TG L G RW P + + W HL A+G L + + Sbjct: 997 LRRRVMRTGRLADSAGRGADTRWIP---RLHTLVGFWPAHLALQAAG-LAIPTLIVGETV 1052 Query: 1005 EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 + PL A++A H L L +R+ PL + ++ G WL+ Sbjct: 1053 TLQLAPLPADEARHCLQVLAGYWRQAHGEPLPLPCKTAGVWLQ----------------- 1095 Query: 1065 QKARTKFLQAYEGNMMVRGEGDD-IWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 Q+ + QAYEG GE + RL+ + + + PL Sbjct: 1096 QQDASAARQAYEGGYHSTGERAESPALARLFPAFEDLDLARLDALATDLYAPLL 1149 >UniRef50_B9CWC7 Exodeoxyribonuclease V gamma chain n=2 Tax=Actinobacillus minor RepID=B9CWC7_9PAST Length = 1085 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 379/1149 (32%), Positives = 580/1149 (50%), Gaps = 102/1149 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M VY+SN+L L ++ + +DPF+PE ILVQS GMAQWLQM +++ G+A N Sbjct: 1 MFTVYYSNQLTALAEMLIHHQKVNPNEDPFQPETILVQSVGMAQWLQMQIAESMGVAGNY 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +FP P SF+W + + P +PKE+ F + M+W+LM ++P +LER +F LR YLT D + Sbjct: 61 EFPFPTSFLWQQYRLLFPHLPKENIFERGVMAWRLMRIIPAVLERPEFQGLRAYLTHDKE 120 Query: 121 K--RKLFQLSSKAADLFDQYLVYRPDWLAQWETGH----------------LVEGLGEAQ 162 + KL+QL++K ADLFDQYLVYRP WL WE G L G+ E Sbjct: 121 QDSLKLYQLATKIADLFDQYLVYRPHWLVHWENGQWQEVVREIQIQPFSTNLQTGIQENV 180 Query: 163 AWQAPLWKALVEYTHQLGQPRW----HRANLYQRFIETLESATTCP-PGLPSRVFICGIS 217 WQ+ LW L+E T + HRA L Q+F E LE T LP R+F+ GIS Sbjct: 181 HWQSLLWNLLIEDTRKDYDELLFTTSHRAYLQQKFFEKLEDLTEEEYKKLPKRIFVFGIS 240 Query: 218 ALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLF 277 +LP L L ++ ++HL F NP + YWGD + A L K+ +Q+ E ++L Sbjct: 241 SLPTTQFATLLKLSEYCDVHLFFLNPSQMYWGDSIENAALEKMALKQQLSETEIQQL--- 297 Query: 278 RDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHN 337 GN LL+ WGK GRD+ L++ + ++ F + ++ L Sbjct: 298 --------------LAQQGNQLLSMWGKQGRDFFDQLAEYS-PEPIELFFENDQESNLSR 342 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 ++ IL +N + + D+SI H CHS REVEVL ++LL + Sbjct: 343 LKQAILNNDNPSYLEL---------------ENDNSIQIHNCHSAMREVEVLQNQLLRLF 387 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFI 455 E++P L+P+DIIVM ADI+ Y+P+I AVF + RY+P+ ISD++ Q PV+ +F+ Sbjct: 388 EQNPHLSPKDIIVMAADIEQYAPYINAVFSRYGREDNRYIPFTISDQKISQVDPVISSFL 447 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE 515 +L L DS F +E +L LL+V + +F E L LR W+ ESGIR + + + Sbjct: 448 VMLKLRDSTFSAEALLDLLEVEAIGQQFGFNREDLTCLRHWIKESGIRSTLTIEQENGWQ 507 Query: 516 LPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 ++W GL R+LLG ++ G WQ+ + ++ES GL AE VG LA + +L W Sbjct: 508 ----NYNSWENGLDRLLLGSCLKEENGIWQNTIAFNESYGLSAERVGKLAEFIEKLTAWS 563 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 + P+ W D++ A + + + A+ LI+Q+ +A+ A L A++ + V Sbjct: 564 VLSLESHPISTWKQALEDLVKAVYQENDASNDALFLIQQELEALEALVLQAKFDEPVAFE 623 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 ++ L RL+ + F+ G VN CTL+PMR+IPFKVVCLLGMN+ +PRQ FD Sbjct: 624 VIERALQDRLNSQSHVMHFMTGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQPVINSFD 683 Query: 696 LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI 755 LM P++GDR+RR+DDRYLFLEAL+SA++ YISY+G+S+ + ER PSVLV + +DY+ Sbjct: 684 LMQYHPRKGDRARREDDRYLFLEALLSAEEVFYISYVGKSLVKDEEREPSVLVSQFVDYL 743 Query: 756 GQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGK 815 + + L ++ H F +N++ G SY +EWL A QA + Sbjct: 744 AKYYSLSLEQ-----------------EHPMNAFSERNFKSG-YVSYHKEWLEFAQQAVE 785 Query: 816 AHSEFVQPLPF--TLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 +H F + LP LP+ + L+ L F P + FF L + FR ED EI DTE F L Sbjct: 786 SHDFFAKSLPENSELPKEIELDELIAFIQSPTKQFFTRNLGIYFREEDDEIEDTEHFSLS 845 Query: 874 GLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL-ADRVI 932 L YQ+ QLL E F + G++P FG++ +Q + + Sbjct: 846 KLDEYQLTAQLLTTSSEMTSP--FFEKETLKGNIPVLNFGKLTQTELTNRIQDMRVELAE 903 Query: 933 ACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGG 992 + + L C V++ G LP + ++ WR L ++LW+ L+ Sbjct: 904 YLKGESDILPFSLQCTQVELVGNLPNLFGQEIVLWRVGKLRDKDTIKLWIYFLILTLLEK 963 Query: 993 NGESRLF-LRKDG--EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTC 1049 +++ L D + F + QA L I+ + + +S T Sbjct: 964 PFALKMYTLEGDKLTCFTFNTIEVSQAKEILEIYIKAFLK---------NKSNLTIAVTQ 1014 Query: 1050 YDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQS 1109 + ++ + + EG + + +R+ Q + +AI + + Sbjct: 1015 DLENYFKKMPQENIAEYCYQSLSKLSEGLN-----DEASYLKRILTQSSLIDYQAIHQNT 1069 Query: 1110 QRFLLPLFR 1118 + + Sbjct: 1070 LDWFALMQE 1078 >UniRef50_C5JAU6 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=uncultured bacterium RepID=C5JAU6_9BACT Length = 1183 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 399/1196 (33%), Positives = 560/1196 (46%), Gaps = 127/1196 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG------ 55 L + H NR+++L + RE P E E+ILVQS GMAQWL++ L++ G Sbjct: 10 LTLIHGNRIELLRDDLVDRFRREPSA-PLESEIILVQSNGMAQWLKLGLAETGGRGGGGG 68 Query: 56 ----IAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFT 109 IAA ++ LPA F+W ++ VL E +P+E+ F+K + W+LM LLP + E F Sbjct: 69 SGLGIAAALELLLPARFLWRIYRSVLGEAAVPEETPFDKTRLVWRLMRLLPGIAAEERFA 128 Query: 110 LLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEA 161 LRH+L D+D+RK +QLS + ADLFDQY VYR DWLA W G + + E Sbjct: 129 PLRHFLRQDADQRKCYQLSVRLADLFDQYQVYRADWLACWAKGEDLLIDARGRRSAIPEE 188 Query: 162 QAWQAPLWKALVEYTHQLGQPRW----HRANLYQRFIETLESATTCPPGLPSRVFICGIS 217 Q WQA LW+ L+ + G RA ++ F+ + P GLP RV + GIS Sbjct: 189 QRWQAALWRLLIADVARTGAGVDAVSGGRAEVHAAFLRRARTEDLLPAGLPRRVTLFGIS 248 Query: 218 ALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLF 277 ALP L+ L AL + ++ + NPC++YW D+ L + QR Sbjct: 249 ALPYQSLEVLMALSRWTQVLMYVHNPCQHYWADVIAGRELFRARRGQR------------ 296 Query: 278 RDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV-------- 329 + + PLLA+WG GRD+I LL D L A + Sbjct: 297 GGAHGVAEPVPEALLHLHAQPLLAAWGMQGRDFIGLLEDAVGEGALWAEGEPLAFDVERE 356 Query: 330 --------TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHS 381 LL +Q DILEL R+ D S+ FHV H Sbjct: 357 ACFVARGGAAGTLLQQLQEDILELRPLDET--------RALWPPVDAQQDRSLCFHVAHG 408 Query: 382 PQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG--SAPADRYLPYAI 439 QREVE+LHD+LL L DP+L+PRDI+VMV DID+Y+ IQAVFG A R++P+ + Sbjct: 409 AQREVEILHDQLLDALNADPSLSPRDILVMVPDIDAYAAHIQAVFGLHGANDPRFIPFVV 468 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 +R R++ +L LL L +R + D+L L++P L RF I E L LR+W+ + Sbjct: 469 VNRTRRKADLLLMTLERLLGLARARVTANDLLDWLELPALRRRFGIAEADLPLLRRWIRD 528 Query: 500 SGIRWGIDDDN-VRELELPATG------QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDE 552 SGIRWG+D + L +P +HTWRFGL RMLLGYA+ W + P+DE Sbjct: 529 SGIRWGLDASHCGAVLGVPGGEIDGTRTRHTWRFGLERMLLGYAVGDRGAPWCGIAPFDE 588 Query: 553 SSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLI 612 EL+G LA L+ + R + + W R +L FF P+ E A TL+ Sbjct: 589 IGLGDGELLGRLADLVAAVEATWRQMKSAATVAAWCGRLRGVLARFFAPEEEDADAYTLL 648 Query: 613 E--QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSI 670 A A AQ D +P++++ + L++ +SQ F AG V TLMPMR+I Sbjct: 649 RLDAHLDAWEALCAEAQLVDPLPVTVVGEYWLSCLEEGGLSQGFFAGAVTFATLMPMRAI 708 Query: 671 PFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYIS 730 PF+ VCLLG+NDG +PR + FDLM + + GDRSRR+DDRYLFLEAL+SA+++L + Sbjct: 709 PFRQVCLLGLNDGAFPRPGNRIDFDLMGGRYRPGDRSRREDDRYLFLEALLSARERLALF 768 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD 790 ++GR I DN+ PSVLV +L D++ L G S + A LT H PF Sbjct: 769 WVGRGIHDNAVAPPSVLVGQLRDHLAAGWRLAGGADPAGG-SGQALVAALTVEHPLQPFS 827 Query: 791 PQNY-----QPGERQSYAREWLPAASQ---AGKAHSEFVQPLPFTLPETVPLETLQRFWA 842 + +YA EW PA A P T E + L L R + Sbjct: 828 RDYFCRGAETDARLFTYAHEWRPAREAGAPAALPVGSVPLLPPVTREEPLRLVELARLFK 887 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFR 902 PVR FFQ RL V F E + D EPF L+ L +Q LL A E D +R R R Sbjct: 888 DPVRGFFQQRLGVRFEREALFLDDHEPFDLDALEHWQSIDALL-ACREPDALDRGLERLR 946 Query: 903 AAGDLPYGAFGEIFWETQCQEM-------QQLADRVIACRQPGQSMEIDLACNG--VQIT 953 +G LP G GE E + + Q L R ++ +G V + Sbjct: 947 LSGVLPAGGQGEHLAEALRETLTRLNGQEQALLARWSGEEIGERTFRFARQIDGRSVAVV 1006 Query: 954 GWLPQVQPDGLLRWR----------PSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKD 1003 L V+ + R ++ ++ W+EHL + G G + + L +D Sbjct: 1007 DSLRGVRRGNGVLGRIVRTASRVLNAGVIRPEVLIEAWVEHLAWQMRLGAGIT-VVLGRD 1065 Query: 1004 GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 G PL+ + A L L+ + +GM PL LP G A Sbjct: 1066 GGIELAPLSRQAAGMALEALLAAWWQGMRHPLAFLPGVGWAGFDGV-------------- 1111 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLFR 1118 +KA F + + +R++ T + + S+ L PL Sbjct: 1112 -EKAEKAFERI---------RVHHPYVRRVFVDFTAFAASGELEQWSEALLRPLRE 1157 >UniRef50_D0KY94 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY94_HALNC Length = 1183 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 368/1212 (30%), Positives = 559/1212 (46%), Gaps = 147/1212 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-------F 54 + NRL++L+ ++ ++R L P E E LVQS GMAQWL++ L++ Sbjct: 15 FLLIQGNRLELLQQVLIDWLKRHPLA-PLENETFLVQSNGMAQWLRLGLARPRSAQDGGL 73 Query: 55 GIAANIDFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLR 112 GIA I+ LPA W + VL +P E+ +K + W+LM LLP L+ F LR Sbjct: 74 GIATGIEMILPARLQWQCYRAVLGTDFVPAEAPLDKDKLVWRLMRLLPNLIHTPSFLPLR 133 Query: 113 HYLTDD--SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV-----EGLGEAQAWQ 165 HY+ D D R+L+QL+ + AD FDQY VYR DWL W+ GH L + Q WQ Sbjct: 134 HYIVTDQRPDDRRLYQLALRVADQFDQYQVYRADWLRHWQEGHDDLPAHETRLPDEQRWQ 193 Query: 166 APLWKALVEYTHQLGQPRWH------RANLYQRFIETLESATTCPPGLPSRVFICGISAL 219 PLW+AL+ + R RA+L+ F + P GLP R+ + G+S++ Sbjct: 194 PPLWRALLADIRERQDDRDGIEFAAGRADLHTAFRKAASEQKARPEGLPRRIVVFGLSSI 253 Query: 220 PPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRD 279 P L L + ++ + F NPC YYWGDI D L + RR Sbjct: 254 APQVLDVLAVASRWSQVIVCFLNPCEYYWGDIIDGHQLFAQRYQGRRPYKSAPNETA--- 310 Query: 280 SENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDA-----------FVD 328 +PLLA+WG+ GRD + LL E + +L A VD Sbjct: 311 ---------------HAHPLLAAWGRQGRDLMRLLDQFEENAQLAANPLTLTPFESTVVD 355 Query: 329 VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEV 388 +LL IQ DIL+L R+ N+R D S+ FH+ HSP REVE+ Sbjct: 356 SAKSSLLTLIQDDILKLRTPDEL--------RALNRRLEPDQDHSLHFHIAHSPLREVEI 407 Query: 389 LHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQ 446 LHD+LLA E D +L P DIIVMV D+ Y+P I A+FG +++P++ISD+ A Sbjct: 408 LHDQLLAAFEADTSLKPTDIIVMVPDMSLYAPAISAIFGRFGRDDPQHIPFSISDQAASG 467 Query: 447 SHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGI 506 ++ A +L+LP SR + ++L LL P+L ARF I+E L L W++ +GIRWG+ Sbjct: 468 QVALINALEQILNLPTSRLLRSELLDLLGSPLLLARFGISETDLTTLHDWIDSAGIRWGL 527 Query: 507 DDDNVRELELP-ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA 565 + + +P Q+TW FGL R+LLGY W + P+ G+ AELVG LA Sbjct: 528 NAQHREAFGVPPGMEQNTWAFGLNRLLLGYLSGDENAIWDEIEPHPVMDGISAELVGKLA 587 Query: 566 SLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEA-----------AMTLIEQ 614 L+ QL+ + + L+++ EW+ R ++ FF + + Sbjct: 588 QLVQQLDKYTQRLSEKCTPTEWVARLRRLMTDFFSLSDTQNHLDSPEIQIEMDTLARLHN 647 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 + + +A+ A + + + + +R RL+ R+ QRF+ G VN TLMPMR+IP++ Sbjct: 648 ELERWLADCSVAGFENEIDIETVRHAWLNRLEPHRLHQRFIVGGVNFATLMPMRAIPYRH 707 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 + LLGM+D YPR+ P FDLM+ + + GDR+RR+DDRYLFLEAL++A+++L IS++GR Sbjct: 708 IYLLGMDDANYPRRQTPNDFDLMNGRYRPGDRARREDDRYLFLEALLAARERLSISWVGR 767 Query: 735 SIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY 794 +I +N R SVLV +L DY+ Q +P + + + T H PF + + Sbjct: 768 NINNNKIRPASVLVSQLRDYLDQFWAVPEPHSCSEIQ---------TTEHPLHPFSRRYF 818 Query: 795 QPG--ERQSYAREWLPAASQAGKAHSEFVQPLPFTLP-ETVPLETLQRFWAHPVRAFFQM 851 + ++A +W LP LP E + L TL F P Sbjct: 819 SADNTDLFTFANDWRAVHDSTQGTSK---TELPIWLPKEPLTLNTLSDFLRTPAHTLLTK 875 Query: 852 RLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERL-------------- 897 R V R +E+ D EPF L+GL R+Q+ +++ + + Q + Sbjct: 876 RFGVYLRPTATELEDHEPFELDGLQRWQLKKEINDRVRHQLAIQAHATSQMTTPTIEHIS 935 Query: 898 ------FRRFRAAGDLPYGAFGEIFWE-----TQCQEMQQLADRVIACRQPGQSMEIDLA 946 + + R G LP + + E Q Q +L R + I + Sbjct: 936 ALISTQYGQARLGGRLPIVSPAFEYSELLPLIDQWQRWLELNLRFHQTAAKSPVLSIR-S 994 Query: 947 CNGVQITGWLPQVQPDGL---------------LRWRPSLLSVAQGMQLWLEHLVYCASG 991 G+ + +P V R + + + W HL+ + Sbjct: 995 DRGIMLEASVPDVYSTESSIPNDTLARLIFIEGKLHRGQDIEWHKCVAQWPAHLLAQLTH 1054 Query: 992 GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYD 1051 G+ E+ L + G F P+ E A +L L++ + + + AP + ++ L Sbjct: 1055 GSVETYLI-GETGTLCFTPIEKEMAKQHLLTLLDAWFDAVQAPYPLACKTAFCLLAQEMT 1113 Query: 1052 AQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDD-IWYQRLWRQLT------PETMEA 1104 +N A K + +EGNM V GE + RLW + + Sbjct: 1114 PENT---------DSALKKARECFEGNMKVPGEVTNSPALARLWPDFSTLINGQSFAKKQ 1164 Query: 1105 IVEQSQRFLLPL 1116 E SQ P+ Sbjct: 1165 FTELSQIIYAPI 1176 >UniRef50_C6MAC3 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Neisseriaceae RepID=C6MAC3_NEISI Length = 1068 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 338/1135 (29%), Positives = 528/1135 (46%), Gaps = 94/1135 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SNRL+ L AL I L+ E I+VQS GM ++L + L+++ G+AAN+ Sbjct: 1 MFYLYQSNRLESLAALFAGIQRVRPLESALAAEQIVVQSQGMRRYLSVYLARELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLP--QLLEREDFTLLRHYLTD- 117 F LPA W + +++P+IP S F+ + M W+L+ L + +F +R L Sbjct: 61 QFSLPAGLTWQLMQKLIPDIPALSPFSPEVMRWRLLDLFRSERFQTTSEFENVRSILQSY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 S + +QL+ + AD+FDQYLVYRP W+ W+ G L+ GLGE + WQA LW+ Y Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQEGKLL-GLGEDEVWQAQLWR----YL 175 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 Q HR L+++ + +L+ LP R F+ GIS + P+YLQ LQ + +H ++ Sbjct: 176 DDGNQSAPHRVALWEKLLSSLDK-----AHLPERFFVFGISTMAPMYLQLLQKISEHCDV 230 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 + NP YWG++ + A L K + G Sbjct: 231 FVFALNPSGQYWGNVIEAAQLLK--------------------------GGDEADLSQTG 264 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 +PLLAS GK GRD+ L+++ +E F +V+ D LLH +Q+DI L + Sbjct: 265 HPLLASLGKQGRDFFDFLTEIG-LEEQPVFEEVSDDTLLHCLQNDIQNLRMPSEHS---- 319 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 R D SI HSP RE+++L D+LL +L E P P DI V+ +I+ Sbjct: 320 --------RADLLGDGSIRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVLTPNIE 371 Query: 417 SYSPFIQAVFGSA-PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 YSPFI+AVFG A + LPY++SD + + +L A L L +SRF + VL LL+ Sbjct: 372 PYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQSLLYALEQTLDLLESRFEVDKVLPLLE 431 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 ++ RF +T + L L V E + WG+D A TW+ L R++LG+ Sbjct: 432 SGLVLRRFGLTADDLPLLHDTVAELNVHWGLDGTMRGA----ADNLFTWQQALERIVLGW 487 Query: 536 AMESA-QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 + WQ+V + ++ G A+ + L+ + EEW CRD+ Sbjct: 488 MLPDDGSPLWQNVSAWHGDVN-RLDVFGRFAAFIRTLSRLAAEWRKPASAEEWTERCRDL 546 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 + + FLPDA+ + A+ EQ E A + +P + + + L F Sbjct: 547 VQSLFLPDADDQYALQQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFL-GSESQAGF 605 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L G + C+++PMRS+PFKV+CLLG+NDG +PR FDL+++ P++GDR+RRDDDRY Sbjct: 606 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARRDDDRY 665 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEA+ISA+ LY+SY+GRSI+++ E PS LV ELID I Sbjct: 666 LFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTIAA----------MTGRRSK 715 Query: 775 RVKAHLTCLHTRMPFDPQNYQP----GERQSYAREWLPAA-SQAGKAHSEFVQPLPFTLP 829 + H H PF + + + S +++ A +A F + L P Sbjct: 716 GLAEHWVEQHPLQPFSHRYFIADNISDDLFSTRQDYAEALNRPREQARPFFSEALEENTP 775 Query: 830 -ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 TV + RFW +PV+A+ Q L D EPF + + I L+A Sbjct: 776 VPTVWQDDFIRFWKNPVKAWLQQTLGWREPYRDEAWESAEPFEPQRADK--IAAAYLDAR 833 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACN 948 D + R A LP G G++ W+ Q + D + ++ + Sbjct: 834 RHNQDFQETAVRLDAESLLPAGELGKL-WQQNFQAAAKRIDGALLQSPKLPPFAYEVPFD 892 Query: 949 GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGG---NGESRLFLRKDGE 1005 G + G L + G + + + Q + L LEHL++CA G ++ + Sbjct: 893 GQTLQGSLGNLYQCGQVFYLDRKPNAPQRIALLLEHLIFCAVGSSETETRQTHIVQPEET 952 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 +P + + QA L + + + G + PL ++ A + Q + + Sbjct: 953 TLYPEIPSSQAQEMLQKWLAFFNLGQTRPLPFFAKTSLAAAEAYGKKQ---------SWE 1003 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEA--IVEQSQRFLLPLFR 1118 K ++Y GN + +G+ D ++ E +E + L+PL Sbjct: 1004 DTLNKARESYHGNKVSKGQKDYTEVALVFGNEDTEPVEGALFQRLVEELLIPLLD 1058 >UniRef50_Q5QUQ7 Exonuclease V gamma subunit n=2 Tax=Idiomarina RepID=Q5QUQ7_IDILO Length = 1155 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 376/1127 (33%), Positives = 552/1127 (48%), Gaps = 96/1127 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 V H +RL+ L + + L P E E +LVQS G+AQWL++ L+Q GIAA ID Sbjct: 8 FIVAHGHRLEDLTDVAVTFTQNYPLA-PLEQETVLVQSNGIAQWLKINLAQASGIAAMID 66 Query: 62 FPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLLPQLLER-EDFTLLRHYLTDDS 119 LPA F W + VL + IPK S F+K ++W+LM LLP+L+E F L+HY +DDS Sbjct: 67 VTLPARFQWKAYRAVLGDDIPKTSPFDKDRLTWRLMRLLPELIEHNPHFAPLKHYTSDDS 126 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL----VEGLGEAQAWQAPLWKALVEY 175 D RKL+QLS + ADLFDQY VYR DWL W G + + + Q WQ LW+A+ Sbjct: 127 DGRKLYQLSGRLADLFDQYAVYRADWLDNWVRGQDMLEQEQPVEDEQLWQPELWRAVSND 186 Query: 176 THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 +RA L+QRFI+T ++ T P GLP RV + GIS+LP LQ L A+ + + Sbjct: 187 IGIDDY-WNNRAELHQRFIDTAQALTERPAGLPPRVVVFGISSLPQQMLQVLDAIKGYTQ 245 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 I L NP +Y+W DI D + + ELP N D + Sbjct: 246 ILLCVHNPSQYHWADIVDGKEALRQAVKASSRLKHKPELPDD---------PNDDELHQL 296 Query: 296 GNPLLASWGKLGRDYIYLLSDLESSQE---------LDAFVDVTPDNLLHNIQSDILELE 346 +PLLASWGK GRDYI LL + + L+ F D+LL +Q DIL L Sbjct: 297 AHPLLASWGKQGRDYIRLLDLYDETLAKQEAFNTIKLELFEPHNTDHLLAQLQDDILNLR 356 Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 + D S+ FHVCHSPQRE+EVLHD+LL +DP L PR Sbjct: 357 PVQETREL---------WPTPNTADKSLQFHVCHSPQRELEVLHDQLLDAFAKDPELKPR 407 Query: 407 DIIVMVADIDSYSPFIQAVFGSAP------ADRYLPYAISDRRARQSHPVLEAFISLLSL 460 D++VM+ D+++Y+P+I AVFG R +PY I+D+ R P++ A LL + Sbjct: 408 DVMVMLPDVNTYAPYIDAVFGRYHNRFGERDPRAIPYTIADQGERHQRPLMIALELLLQV 467 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA-T 519 RF D+ LL VP + RFD++++ L L++WV E+G RWG++ + + +PA Sbjct: 468 DQLRFTQTDLFNLLSVPAVQQRFDMSDDDLPQLKRWVKEAGARWGLNAEQRAQFYMPAAE 527 Query: 520 GQHTWRFGLTRMLLGYAMES-------AQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 ++W FGL RM+ GYAM W +V PY E +GL A LVG LA ++ L Sbjct: 528 ETNSWWFGLKRMIAGYAMGDLADVNLENDSPWANVEPYTEVAGLSAALVGCLADVVRTLE 587 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL-IEQQWQAIIAEGLGAQYGDA 631 W + E L EW+ +L FF + +++ + + + + + A Sbjct: 588 QWWQRAQGEHSLPEWVTQGEWLLEQFFEAEEDSDRLLLAKLSDELYQLRDICVEADNESQ 647 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + L + +D +R+DQ+ ++QRFLAG VN TLMPMR+IPFK VC+LGMN+ YPR Sbjct: 648 LRLPIFKDAWLERVDQQNLNQRFLAGAVNFATLMPMRAIPFKYVCVLGMNESDYPRSTPR 707 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 + FDLM+ + + GDRSRRDDDRYLFLEA++SA+ Y+S++G S +DNSER PSVLV +L Sbjct: 708 VDFDLMTDRYRPGDRSRRDDDRYLFLEAMLSARDCFYLSWVGYSAKDNSERTPSVLVAQL 767 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY--QPGERQSYAREWLPA 809 D++ Q + LT +H PF+P + + + +YA EW A Sbjct: 768 RDHLQQGWEVD--------------INSLTVVHKLQPFNPYYFNQEDSDYFTYASEWAQA 813 Query: 810 ASQ--AGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 A + + L T+ + ++RF P R +F RL F ++ D+ Sbjct: 814 HQGAVASTSRTASETAADDELERTLSINDIKRFIEEPARLYFNWRLDTYFSRNSEDLDDS 873 Query: 868 EPFILEGLSRYQINQQLLN----ALVEQDDAER----LFRRFRAAGDLPYGAFGE----I 915 E F+++ L + + +L++ AL+ E R + G L GA E Sbjct: 874 EAFVMDNLQSWSLTTRLVDAGKKALLNGAGIEASLLKELNRIKREGALGIGAIAEQNGLQ 933 Query: 916 FWETQCQEMQQLADRVIACRQPGQ-SMEIDLACNGVQITGWLPQVQPDG-----LLRWRP 969 E + ++ + + + +G+ I + + + + Sbjct: 934 LLEQSQEILETYQQSIAGYSGVNEFPETVFFEHSGLTIDDTVTGLHSNENGERLWVVTSA 993 Query: 970 SLLSVAQGM----QLWLEHLVY-----CASGGNGESRLFLRKDGE-WRFPPLAAEQALHY 1019 S ++ G W Y + L + K G + P+ AE A+ Sbjct: 994 SNIAAKNGKGINSGGWKHASAYYLGLLLLNLQKPTRLLIVSKGGCQLQVAPVPAELAVQQ 1053 Query: 1020 LSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQK 1066 L Q++E P + + G WL D L ++ QK Sbjct: 1054 LEQILELVALSAQQPQPMHLDVGMTWLSAMDKNSQDEALAHEAARQK 1100 >UniRef50_C7I4N7 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I4N7_THIIN Length = 1173 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 380/1203 (31%), Positives = 554/1203 (46%), Gaps = 142/1203 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + NRL++L + + ++ L P E E+ILVQS G A+WL+M L+ + GI A Sbjct: 9 LFILQGNRLELLRDALLEWLAQQPLA-PLEEEVILVQSNGAAEWLKMALAAQGGICAATR 67 Query: 62 FPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQ------------------ 101 LP F+W + +VL P +S +K ++W+LM LL Sbjct: 68 VELPGRFLWRTYRQVLGRAATPSQSPLDKPLLTWRLMRLLGAPGAELHPARPPWESRKLG 127 Query: 102 ---------LLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 L+ + L YL D + QL+ + ADL+DQY +YR DWL W G Sbjct: 128 AAQRFLEGGTLDADVCAPLLQYLQGQ-DLLRRLQLAQRLADLYDQYQIYRDDWLDAWAQG 186 Query: 153 HLV--------EGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTC- 203 V L E Q WQA LW+ ++ + + + RA + + ++ L +A Sbjct: 187 RDVLIDALGRATPLPEDQRWQAWLWRRVLAELSE-AERQSTRAQVQRAMLQALNTADIAA 245 Query: 204 ---PPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKL 260 P LP RV + G S LP V L AL AL +++++ + NPCRY+W DI + L + Sbjct: 246 DPTRPALPRRVVLFGASHLPTVVLDALVALSRYVQVLIALPNPCRYHWADIIEGRELLRA 305 Query: 261 LTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESS 320 +R D + +PLLA+WG+ GRD++ L + Sbjct: 306 APARRPLRAGDLAQVSL------------EVMHAHAHPLLAAWGRQGRDFMRQLDAFDER 353 Query: 321 Q---------ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLD 371 D F D D LL +Q+ I +L + + D Sbjct: 354 ANAADRPGLPRHDLFDDAPGDTLLEQMQAAIRDLLPLPEHS-----------RTLISAAD 402 Query: 372 SSITFHVCHSPQREVEVLHDRLLAMLEEDPT---LTPRDIIVMVADIDSYSPFIQAVFGS 428 S+ FH+ HS QREVE+LHD+LL +L + L PRDI+VM DI ++P I+AVFG Sbjct: 403 RSVVFHIGHSAQREVEILHDQLLHLLAQPSGGRPLRPRDIVVMTPDIAPFAPAIRAVFGQ 462 Query: 429 AP--ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486 P +R++P+ I+D AR + P+L A LL LP R ++ D+ ALLDVP +A RF + Sbjct: 463 YPPGDERFIPFDIADLSARATEPLLLALDWLLRLPQERILASDISALLDVPAIARRFGLR 522 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQ 545 E L QW+ +G+RWG+D D+ L L A Q++WRFGL RMLLGYA G ++ Sbjct: 523 PEDRPRLTQWIVGAGVRWGLDVDHRAHLGLGACGEQNSWRFGLRRMLLGYAGAGEDG-FE 581 Query: 546 SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAET 605 +++P+DE GL A LVG LA LL L W R Q +W RD+L+A LP Sbjct: 582 NIVPFDEIGGLDAALVGPLADLLDVLQAWWRTALQNATPGQWAQYARDLLDAISLPQDLR 641 Query: 606 EAA-MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTL 664 E ++ + AQ+ +AVPL +LR+ LD+ RFLAG V CTL Sbjct: 642 ERETRARLDDALSTWLDHCAAAQFDEAVPLQVLRESWLSGLDEAAGGGRFLAGGVTFCTL 701 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALIS 722 MP+R+IPF+VVCLLGMN+G YPR+ FDL+ Q + + GDR+RR+DDRYL LEAL+S Sbjct: 702 MPLRAIPFEVVCLLGMNEGDYPRRSPHSDFDLLHQPGQYRPGDRARREDDRYLMLEALLS 761 Query: 723 AQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTC 782 A++ LY+S+ GRS +DN+E+ PSVLV +L DY+ G + A T Sbjct: 762 ARRMLYVSWAGRSPRDNTEQPPSVLVAQLRDYLAAGWQGEGQ---------GDLLAQRTT 812 Query: 783 LHTRMPFDPQNYQPG-ERQSYAREWLPAASQAGK-AHSEFVQPLPFT-LPETVPLETLQR 839 +H PF + ++ +YAREW A + P+PF L E + L+ L R Sbjct: 813 VHPLQPFSRRYFEGDAALFTYAREWRQAHGGVAENGTGNGNGPMPFEPLTEPLSLQQLAR 872 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE------QDD 893 F +PV+AFF+ RL V F E D E F L+GL R+ + L++ + Sbjct: 873 FLKNPVKAFFRTRLDVVF-DELQTQDDDEVFALDGLDRHSLLSHLIDDPQAAVYEGIEAA 931 Query: 894 AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ-------------PGQS 940 R R+ + +G LP A G + QE L Q Q Sbjct: 932 VARRVRQLQGSGALPMRALGSRVAQGLEQEALPLLRSWSELAQAYPQAVDKRALIVEHQD 991 Query: 941 MEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVA--QGMQLWLEHLVYCASGGNGESRL 998 + +D +G++ G P R + + W+ + A G+ L Sbjct: 992 LRLDDWLDGLRTGGQSPIWMQLNASRLSDGKAQARAEKLIDAWVRQMAASA-CGHAVQGL 1050 Query: 999 FLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAML 1058 + D P L +A +L L+ ++EGM PL + A LK Sbjct: 1051 LIGADARVDLPSLPPAEARDHLHTLLAAWQEGMRRPLPFTARTALAELKNRKG------- 1103 Query: 1059 DDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLF 1117 + YEG GE ++ R + + + PL Sbjct: 1104 -------------QEVYEGGYCTSGEVEEPCLARTFPDFASLSADGRFETYLAELFRPLA 1150 Query: 1118 RFN 1120 + Sbjct: 1151 DWA 1153 >UniRef50_C7LVF8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF8_DESBD Length = 1064 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 345/1133 (30%), Positives = 540/1133 (47%), Gaps = 93/1133 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 ++ SNRL+ L L+ +++ DP EPE ILVQS GM +W+ M L+++ G+ AN Sbjct: 4 FLLHASNRLENLAELLAEVLKT--PLDPMEPETILVQSGGMQRWVSMQLARRHGVCANTR 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 FP P F + + + ++P+E +++ M W++ LL LL+ +F L Y+ +DS+ Sbjct: 62 FPFPVGFAYALCRELRADLPREYPLSQERMLWRITHLLRGLLDEPEFAPLARYVQEDSE- 120 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-----VEGLGEAQAWQAPLWKALVEYT 176 + QL+ + A FDQYL++RP+W A+WE + G ++AWQA LW+ L+ Sbjct: 121 LRSVQLAERIAYHFDQYLIFRPEWAARWENHEPSGNFLLPGHVASEAWQARLWRELIRDM 180 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 HRA L +R I +LE T+ P LPSRV + GI LPPVYL L+AL +H ++ Sbjct: 181 GG-----EHRAALLRRAIASLEKGTSLP-DLPSRVCVFGIPTLPPVYLDLLKALSRHSQV 234 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 H+ +PC+ YWGD+ + S E E + Sbjct: 235 HVFLLSPCQKYWGDLLTHRERRRAYRAGEHASPERPEDAMP------------------- 275 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 LA G +G++++ LL + + + E + + D +L +Q+D+L+L+ R Sbjct: 276 ---LAGLGAVGKEFLELLMERD-ALETGLYEEPVGDTMLGQLQADLLDLDVREEKTDF-- 329 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 D+SI H CHSP RE+E+L D +L +L +D +L+P+DI+VM DI+ Sbjct: 330 -------------SDTSIQVHCCHSPLREMEILKDLILDLLAKDTSLSPQDILVMNPDIE 376 Query: 417 SYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y+P IQAVFG+A D +P++ISDR+ ++ + F+ LL RF + V ALL+ Sbjct: 377 RYAPVIQAVFGTAGED-GIPFSISDRKPTKAAETIRLFLELLEFGQHRFEASRVCALLEA 435 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 P + R + + + +WV SG+RWG+D D R+ L GQ+TW GL+R+ LGY Sbjct: 436 PPVRQRLGLDASDTQRVLEWVRASGVRWGLDLDFRRKAGLGDFGQNTWESGLSRLYLGY- 494 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 M A + P EL+G + + + +L L R +W +L+ Sbjct: 495 MTGAADPLGGIAPLALRGSAEQELLGRVTAWIDELATLWSRLRDTRTPADWQDCLLWILD 554 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 AFF D + I + + + + L L+R RLD+ FLA Sbjct: 555 AFFPQDPAQAEHLLAIRKAVTDLTRDMGDFEADARTMLYLIRK----RLDESGGESGFLA 610 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLF 716 + C L PMRSIPF+V+CL G+ +PRQ PLGFDLM+ +P+ GDRS R+DDRYLF Sbjct: 611 SGLTFCGLKPMRSIPFRVICLTGLTSTAFPRQDIPLGFDLMAARPRPGDRSHREDDRYLF 670 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 LE++ISA+ L ++Y G S DN E PSVLV EL+D++ + + G Sbjct: 671 LESIISARDNLILTYPGLSQSDNLEAPPSVLVSELLDFLDRGCTVDG----------LTP 720 Query: 777 KAHLTCLHTRMPFDPQNYQPGER-QSYAREWLPAASQAGKAHS--------EFVQPLPFT 827 + H F P + G SY+ + AA H ++ Sbjct: 721 SEAIVFKHKLQAFHPDYFSAGSPIFSYSAQNRDAAQALFAEHQSRQFFPEASTLEGAHAE 780 Query: 828 LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI-LEGLSRYQINQQLLN 886 + +E L RF HP R + L+++ + + D EP GL Y Q LL Sbjct: 781 QEIEIDIEELTRFLTHPCRHLLRA-LRIDPTGGEDDFLDEEPLATPTGLEAYGPLQDLLR 839 Query: 887 ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEID-- 944 +++ A L A LP G G C +++ LAD+ A + + +D Sbjct: 840 TALDE-PAANLEGLLLAWQLLPPGQAGTDASRKLCSQIRALADQARAVIGDEKPLRLDLK 898 Query: 945 LACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG 1004 L + +TG + + D + RP+ + ++LW+ HL A+G +S D Sbjct: 899 LPLGRITLTGRID-LHGDRFVTCRPAKTKSSDMLRLWVRHLAASATGHAVQSMHIGTDD- 956 Query: 1005 EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTL 1064 FP A A + L L+ Y GM AP+ + P + A+ + + + + Sbjct: 957 --CFPAPEAPNARNLLEGLLRLYTRGMRAPIHLFPRTSLAFAEARFTGRKPKERPE---- 1010 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 A + ++ +EG MV E DD L+R P E + ++ P+ Sbjct: 1011 --ALMQAMRQWEGGYMVSPERDDPHLAFLFRDTEP-DWERFADVAEEIYGPIL 1060 >UniRef50_A1KVC5 Exodeoxyribonuclease V n=23 Tax=Neisseria RepID=A1KVC5_NEIMF Length = 1069 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 337/1129 (29%), Positives = 524/1129 (46%), Gaps = 93/1129 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SNRL+ L AL I + + L +PE I+VQS GM ++L L++ G+AAN+ Sbjct: 1 MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLER--EDFTLLRHYLTD- 117 F LPA W + +++P IP+ S F + M W+L+ L R +F +R+ L D Sbjct: 61 SFSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 S + +QL+ + AD+FDQYLVYRP W+ W+ G + GLG+ + WQ+ LW+ Y Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRL-GLGDDEIWQSKLWR----YL 175 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 Q HR L+++ + L+ LP R F+ GIS + P+YLQ L L +H ++ Sbjct: 176 DDGRQSAPHRVALWEKLLAALDKDK-----LPERYFVFGISTMAPMYLQLLHKLSEHCDV 230 Query: 237 HLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVG 296 + NP YWG++ + A + K G Sbjct: 231 FVFALNPSGMYWGNVIEAAQILK--------------------------GGGDPDLTQAG 264 Query: 297 NPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 +PLLAS GK GRD+ L+++E E F + D LLH +Q+DI L+ + + Sbjct: 265 HPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGS-- 322 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 ++ D SI HSP RE+++L D+LL +L E P P DI V+ I+ Sbjct: 323 ----------VNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPHIE 372 Query: 417 SYSPFIQAVFGSA-PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 SY+PFI+AVFG A P + LPY++SD + + P+ A L L +SRF + VL LL+ Sbjct: 373 SYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLE 432 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 + RF +TE+ L L V + + WG+D + TW+ + RM+LG+ Sbjct: 433 TAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRG----GTDQLFTWKQAVERMILGW 488 Query: 536 AMESA-QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 + WQ V + A L G A+LL L+ R Q + EW+ CRD+ Sbjct: 489 MLPEGGNPMWQDVSAWYADVNQTA-LFGRFAALLETLSDIVRIWRQPATIGEWVARCRDL 547 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 L F +A+ + ++ +E +W AE AQ+ +P + + + LD E F Sbjct: 548 LETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESE-AGF 606 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 L G + C+++PMRS+PFKV+CLLG+NDG +PR FDL+++ P +GDR+RRDDDRY Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY 666 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLEALISA++ LY+SYIGR I+ + E PS L+ ELID + + + Sbjct: 667 LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQ--------- 717 Query: 775 RVKAHLTCLHTRMPFDPQNYQPGERQS----YAREWLPAASQAGK-AHSEFVQPLPFTLP 829 + + H F + +Q G R ++ A Q + F QP+ P Sbjct: 718 -LAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEP 776 Query: 830 -ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 + + RFW +PV+ + Q +L + EPF QI + + A Sbjct: 777 VAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFE--PQHADQIAETYIEAR 834 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACN 948 E D + R A LP G G W+ Q + D + + + + Sbjct: 835 REGRDFAQTAARIGAESLLPSGELG-RLWQQNFQTAAKQIDTAVLNSPKLPPLSYAIPSD 893 Query: 949 GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCA---SGGNGESRLFLRKDGE 1005 G + G L + G + + + Q + LEHL++CA S ++ Sbjct: 894 GQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGET 953 Query: 1006 WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQ 1065 +A ++AL LS+ + + G + PL ++ A + Q+ + Sbjct: 954 EILAEIAQDRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQD---------WE 1004 Query: 1066 KARTKFLQAYEGNMMVRGEGDDIWYQRLWRQL--TPETMEAIVEQSQRF 1112 A K AY GN + +G+ D ++ P ++ Sbjct: 1005 AALKKAQTAYYGNKVSKGQKDYTEVALVFGNASQNPLEQPLFENLARLL 1053 >UniRef50_C8R0F3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0F3_9DELT Length = 1205 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 387/1197 (32%), Positives = 569/1197 (47%), Gaps = 104/1197 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L +Y SNRL+ L + ++ + P E ++VQS GMA WL +L+Q+FGI A+ D Sbjct: 25 LILYRSNRLEALLDCLAASLQDDPPP-PLSSECVVVQSRGMATWLGQSLAQRFGIWAHPD 83 Query: 62 FPLPASFIWDMFVRVLPEIPKESA-FNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 FP P FI + E + F+++ ++ ++ LLPQLL R +F LR YL +D Sbjct: 84 FPHPRRFIERLLRAAAGEEAATATSFSRELLTLAILELLPQLLSRPEFAPLRRYLEG-AD 142 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K QL+ + A +FDQYLVYRP+ + WE + WQA LW+ L + Sbjct: 143 DWKSLQLAERIAYVFDQYLVYRPEMVLAWEDRQAEP--EDDDRWQALLWRQLAQRFGS-- 198 Query: 181 QPRWHRANLYQRFIETLESATTC-PPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 A L+ + L+ P LP+RVF+ GI+ LPPVYL L K + HLL Sbjct: 199 -----PARLFHQAKGRLQQGDLAQPELLPARVFLFGITTLPPVYLDLLNEAAKLLPCHLL 253 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 P R YWGDI P +LL R P +++ D G+PL Sbjct: 254 LFAPARDYWGDILSPKAANRLLLRHH---------PPAANADEQHGRDFEHLHLDTGHPL 304 Query: 300 LASWGKLGRDYIYLLSDLES---SQELDAFVDVT-----PDNLLHNIQSDILELENRAVA 351 LASWG++GR++ +++ + D FV+ ++L +Q DILEL+ A A Sbjct: 305 LASWGEVGREFQHIMEERAEYLQPAHGDCFVNPATVEVAGASILARLQRDILELQEPAPA 364 Query: 352 GVNIEEF----SRSDNKRPLDP-----LDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 + +N+ P D SI H CHSP REVEVL D+LLAML+ Sbjct: 365 AADQRNSAGDSPNPNNRLPEQAAGAVDHDHSIVIHACHSPLREVEVLQDQLLAMLDV-EG 423 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSA-PADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 PRDI+VMV DI++Y+P I+AVF RY+P+ ++DRR + P+L+A ++LL L Sbjct: 424 YRPRDIVVMVPDIETYAPLIEAVFRRPTGDRRYIPFRLADRRVSREAPLLDALLNLLDLA 483 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 R VL L + F + L+ L QW+ + +RWGID+++ R + P Q Sbjct: 484 RGRLPLSQVLDFLAREPVRQGFGLDGRQLQRLEQWLEQLRVRWGIDEEHRRRHDQPPDRQ 543 Query: 522 HTWRFGLTRMLLGYAMESAQ-GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +TWRFGL R++LGYA+ +LP+D+ G A+L G L L + + Sbjct: 544 NTWRFGLDRLILGYALPGEDRYLVAGILPFDDIEGQDAQLAGVLLQFSQALFSLVDEVRE 603 Query: 581 ERPLEEWLPVCRDMLNAFFLPDA----ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 + + W+ + R + AFF P+ + + A++ E A + L+ Sbjct: 604 AKTMARWVELVRRAMAAFFAPEERAAAGEQWQRQSLRDALVALLQESERAGLERPLELAA 663 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 L RLD+ ++ FL G + CT++PMR+IPF VVCLLGMNDG +PRQ P GFDL Sbjct: 664 FLRLLRARLDEAGMAAGFLEGGLTFCTMLPMRTIPFPVVCLLGMNDGDFPRQDNPAGFDL 723 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 ++ P+ GDRSRR DDRYLFLE+L+SA+++LYISY+GRSI+DN+E PS LV EL+D + Sbjct: 724 LAAAPRPGDRSRRRDDRYLFLESLLSARRRLYISYVGRSIKDNTELPPSPLVDELLDCLE 783 Query: 757 QSHYLPGDEALNCDESEAR---------VKAHLTCLHTRMPFDPQNYQPGE--RQSYARE 805 + + + + + +A H PF P+ +QP + +YA E Sbjct: 784 RMPEAVAESTADSEGTGEEERLADRRRRTRARFVVNHPLQPFSPRYFQPDQPLLFTYAAE 843 Query: 806 WLPAAS-------QAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFR 858 + P S Q G P L L RF+ +P R + + L ++ Sbjct: 844 YAPVPSTRPVGTGQGGPDSPRPKAAATAPAPGAPTLAELHRFFRNPSRWYAEHHLGLSLP 903 Query: 859 TEDSEIPDTEPFILEGLSRYQINQQLLN------ALVEQDDAERLFRRFR----AAGDLP 908 + PD EP LE L Y++N+QLL A V + + RR R A G+LP Sbjct: 904 PGEEARPDREPVFLERLDAYRLNRQLLQDPASVLAAVNAGEDDEAGRRLRHLLAARGELP 963 Query: 909 YGAFGEIFWETQCQEMQQLAD--RVIACRQPGQSMEIDLACNG-VQITGWLPQVQPDGLL 965 ++ +A +P ++ +DL + + G L GLL Sbjct: 964 LAGAAAPALAEAMAAVEPVAAFLATNPAGRPLPNLPLDLELGQHLYLRGELRDRAELGLL 1023 Query: 966 RWRPSLLSVAQGMQLWLEHLVYCASGGNGESR---LFLRKDGEWR-------FPPLAAEQ 1015 RWRP + WL+HL CA + L R G+ F +A EQ Sbjct: 1024 RWRPGRSKPVFLLLAWLDHLALCARAPADQDHQCLLVARGKGQDEGQADIRIFRAVAQEQ 1083 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A L+QL++ +R G APL P AW Y A+ D ++AR LQAY Sbjct: 1084 AQSLLAQLLDLWRRGQEAPLPFFPACSHAWSDKIYQAKE---SDPAKLCRQARQAALQAY 1140 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTP--------------ETMEAIVEQSQRFLLPLFR 1118 G G+G D + ++++ P E ++ LP+ R Sbjct: 1141 HGGDFHPGDGADPYVGLIFQEADPAGEWSEDDSSGPGGSDWEEFTAVAETVYLPMLR 1197 >UniRef50_Q1QYD4 DNA helicase/exodeoxyribonuclease V, gamma subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYD4_CHRSD Length = 1210 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 391/1208 (32%), Positives = 562/1208 (46%), Gaps = 100/1208 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M V H+N L+ L L ++ R R P PE LVQS GMAQWL++TL++ GIAA++ Sbjct: 1 MFSVIHANHLEDLGTLALDVIRRHR-QPPLVPETFLVQSNGMAQWLRLTLAEADGIAASV 59 Query: 61 DFPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLLPQLLERED-------FTLLR 112 DFPLP+SF+W + VL + IP++S F+K ++W+LM LL + L+ E + LR Sbjct: 60 DFPLPSSFVWRAYRAVLGDDIPEQSPFDKTPLAWRLMALLERCLDPETSPDDPTCYAPLR 119 Query: 113 HYLTDDSDK-------------RKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-LVEGL 158 YL ++ + R+ + L+ + ADLFDQYL+YRP+W+ WE G L Sbjct: 120 DYLQGEALEASPLPGAAEEARERRRWHLAVRLADLFDQYLIYRPEWIEAWERGEHAPADL 179 Query: 159 GEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA 218 + Q WQ LW+AL+E HRA L++RF++ P +P RVF+ GISA Sbjct: 180 PDDQRWQPALWRALIEDA-PAAAREHHRARLHRRFLDAARGLRKRPRDVPPRVFVFGISA 238 Query: 219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFR 278 LP L+AL AL +++ L+ NPCR+YWGDI K R S RE Sbjct: 239 LPAQTLEALHALSGVVDVFLMIANPCRHYWGDIVSDRDAIKRAGRL--SSQARREQEARH 296 Query: 279 DSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ----ELDAFVDVTPDNL 334 + + NPLLA WG GRD+I L + ES + E D F D+ P+ Sbjct: 297 PEAPWLAELDEEALHLHANPLLAGWGTQGRDFIVGLYEFESDRGFDLETDVFRDMAPE-- 354 Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 + ++ E R R + D S++ HSP REVE+LHDRLL Sbjct: 355 -QSPTLLQQLQQDVLELVHPGERARREGGPRRIAEDDESLSLVSAHSPLREVEILHDRLL 413 Query: 395 AMLEE----DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPA--DRYLPYAISDRRARQSH 448 A E L PRDIIVMV DID Y+P I+AVFG P R++P+ I+D+ A ++H Sbjct: 414 AAFERAEAAGQPLRPRDIIVMVPDIDRYAPCIEAVFGQLPPSHPRHIPFTIADQVASEAH 473 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 P++ + LL LP+ R +VL L+VP F I E L LRQW+ SG+RWG+ Sbjct: 474 PLMALALLLLELPERRLTVSEVLDALEVPAFRTAFAIDEAELERLRQWLAGSGVRWGLSA 533 Query: 509 DNVRELELPATGQHTWRFGLTRMLLGYAMESAQ-----------------GEWQSVLPYD 551 ++ L PA G+++WRFGL+RMLLGYA+ G++Q ++PY Sbjct: 534 EHRDSLGFPALGENSWRFGLSRMLLGYAVGEPSAGGARDDSEDSLGHAPSGDFQGIVPYA 593 Query: 552 ESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAA-MT 610 E GL A+L G +A+LL L L + WL + + A P E M Sbjct: 594 EVGGLEADLAGRVATLLSTLEQQCAALGERLTPMAWLGRLQALFAACLQPGTADEHDVMA 653 Query: 611 LIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSI 670 ++ + A + + V L ++RD L LD+ ++QRFLAG VN TLMPMR+I Sbjct: 654 RLDAALARWAQQCRHADFEEPVGLGVVRDALRAELDEGGLAQRFLAGKVNFATLMPMRAI 713 Query: 671 PFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYIS 730 PF+ V LLGMNDG YPR P FDLM+ +P+ GDRSRRDDDRYL LEA++SA+ KL +S Sbjct: 714 PFREVYLLGMNDGDYPRVRQPQDFDLMATRPRPGDRSRRDDDRYLMLEAMLSARAKLTLS 773 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD 790 ++G ++DN+ R PSVL+ EL+D + Q +P D A + D AR+ L H PF Sbjct: 774 WVGHDVRDNTPRPPSVLIGELLDTLEQGWDVPEDGAGSRD---ARLARRLIETHPLQPFS 830 Query: 791 PQNYQ-PGERQSYAREWLPAASQAGKAHSEFVQPLPFT-------LPETVPLETLQRFWA 842 + ++ R +Y W + + P E + L LQR Sbjct: 831 RRYFERDDPRFTYEASWEALYATPEDTAAATADGAPSPDASMASLPDEPLSLGDLQRVLR 890 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFR 902 P + RL V++ D EPF L+GL + + ++LL+ + R R Sbjct: 891 RPWTVYL-GRLGVHYVDPHVPDEDNEPFALDGLEDHGLKRELLDGARGGVALASVAERLR 949 Query: 903 AAGDLPYGAFGEIFWETQCQEMQQLADRVI----ACRQPGQSM-EIDLACNGVQITGWLP 957 AG LP FGE E + + + + AC + + + + L Sbjct: 950 LAGRLPTAGFGEALIEPRLARLSRQVESWRRDVAACTAASPFLARFQGGASALTLEARLD 1009 Query: 958 QVQ--------PDGLLRWRPSLL---------------SVAQGMQLWLEHLVYCASGGNG 994 V P L+ P V + +L L+ A+ Sbjct: 1010 DVFAAPEDGAAPWCLMTLEPGHYGHLKVEGTGPHRHVGKVHRLYGGYLRWLLANATLEAP 1069 Query: 995 ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQN 1054 S + +D P +AA A L+ ++ + P + E K Sbjct: 1070 CSWTAVFEDRCLSLPGMAAATARQQLATWLDAWARAYRMPWPAIGEVAQEIWKRVPRETC 1129 Query: 1055 DAMLDDDSTLQKARTKFLQAYEGNMMVRG---EGDDIWYQRLWRQLTPETMEAIVEQSQR 1111 +A+ + R + YE + D +LW V S Sbjct: 1130 EALQAGEPLESGLREALIARYETDAYAGPAALRARDGALGQLWPDFAAFEAAGGVAASLT 1189 Query: 1112 FLLPLFRF 1119 PL Sbjct: 1190 LYAPLLDM 1197 >UniRef50_C5TL47 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Neisseria RepID=C5TL47_NEIFL Length = 1099 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 315/1137 (27%), Positives = 517/1137 (45%), Gaps = 99/1137 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M ++ S+RL+ L + I + LD E ++VQS GM ++L + +++ G+AAN+ Sbjct: 1 MFYLFQSDRLESLAEMCARIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLER--EDFTLLR----HY 114 F LPA W + +++P++P S F+ + M W+L+ L + + ++ +R Y Sbjct: 61 KFSLPAGLAWQLMRKLVPDVPPLSPFSPEVMRWRLLDLFRSEMFQTAPEYENVRLKLESY 120 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE 174 L + +QL+ + AD+FDQYLVYRPDW+ W+ G L+ GLG+ + WQA LW+ Sbjct: 121 LYSSASAD--YQLAGQMADIFDQYLVYRPDWIDAWQAGKLL-GLGDDEDWQARLWR---- 173 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 Y Q HR L+++ + L+ LP R+F+ GIS + P+YLQ L + KH Sbjct: 174 YLDDGSQSALHRVALWEKLLAQLDK-----SVLPQRLFVFGISTMAPMYLQLLHQISKHC 228 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++ + NP YWG++ D A + K + Sbjct: 229 DVFVFALNPSSQYWGEVIDEAQILKR--------------------------GDEADLSQ 262 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVN 354 G+PLLAS GK GRD+ LS++E+ Q++ + + D LLH +Q DI L + Sbjct: 263 AGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQKDIQNLIMPSERLYQ 322 Query: 355 IEEFSRSDNKRPLDP----------------LDSSITFHVCHSPQREVEVLHDRLLAMLE 398 EE + + D S+ HSP RE+++L + L +L+ Sbjct: 323 QEEGEAGGQQALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQ 382 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP-ADRYLPYAISDRRARQSHPVLEAFISL 457 +P P DI V+ +I+ YSPFI+AVFG A + LPY+ISD + + P+L A Sbjct: 383 NNPDWQPHDIAVLTPNIEPYSPFIEAVFGQAHAGSQALPYSISDVKLSRRQPLLYALAQT 442 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L L +SRF + VL LL+ ++ RF ++EE + L + V + WG+D Sbjct: 443 LDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHETVAGLNVHWGLDQTMRD----G 498 Query: 518 ATGQHTWRFGLTRMLLGYAMESA-QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 TW+ + R+ LG+ + G W+ V + + ++ A + L Sbjct: 499 KDNLFTWQQAVERLALGWMLPEGGNGMWRGVSAWYSNVN-QLDVFSGFAEFIRTLADMAA 557 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 +E W+ CRD+L F PD + + A EQ E A++ +P Sbjct: 558 QWQAPANVEIWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKT 617 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 + + + LD E FL+G + C+++PMRS+PFK+VCLLG+NDG +PR FDL Sbjct: 618 VIRHIRRFLDSES-QAGFLSGGITFCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDL 676 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 +++ PK+GDR+RRDDDRYLFLEALISA++ LY+SYIGR I++++E PS L+ EL+D I Sbjct: 677 IAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDAEFAPSSLISELLDTIA 736 Query: 757 QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE----RQSYAREWLPAA-S 811 +S + H F + +Q S +++ A Sbjct: 737 A----------MTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQ 786 Query: 812 QAGKAHSEFVQPLPFTLP-ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPF 870 +A F++ L P +T+ L FW +PV+ + + L + D EPF Sbjct: 787 PPAEAQPFFLEALSQEEPGKTIHQGELVSFWRNPVKVWLKKNLSWDQPYLDGAWESAEPF 846 Query: 871 ILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADR 930 +I L+A + +D E R A +P G G W+ Q Q + D Sbjct: 847 E--PQHEGRIADAYLDARRKGEDFEDTAIRLNAESLMPVGELG-GLWQKQYQISAKNVDT 903 Query: 931 VIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS 990 + S + + + + G + + G + + + + LEHL++CA Sbjct: 904 ELIRSNKRPSEPYEESFGDLVLQGTIGNLYECGRIVFLNQKDNAPNRIARLLEHLIFCAV 963 Query: 991 GG---NGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLK 1047 + + + E A L + + +R G + PL ++ A + Sbjct: 964 APKSVANRQTHIVSLGQTETYAAIGQEAARELLKEWLVYFRIGQNTPLPFFAKTSLAAAE 1023 Query: 1048 TCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEA 1104 A K + + GN M +G+ + + ++ L ++ Sbjct: 1024 EYNKK---------EDWDAALRKAHEVFNGNKMSKGQKEYTEVKLVFGHLEESPLDE 1071 >UniRef50_D0IXL5 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Comamonadaceae RepID=D0IXL5_COMTE Length = 1195 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 350/1194 (29%), Positives = 536/1194 (44%), Gaps = 120/1194 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L H N+ + L + + L EPE++LVQS GMA+W +M ++++ G+ A Sbjct: 20 LIAIHGNQTEALADTVLAWLAAHPLQA-LEPEIVLVQSNGMAEWFKMRMAEQQGVCAAAQ 78 Query: 62 FPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 LPA F+W + ++L E+P+ES +K M W+LM LLPQ L F + ++L Sbjct: 79 VELPARFVWRSYRQILGRHEVPRESPLDKTPMIWRLMRLLPQCLGEPAFAPIANFLRPG- 137 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQAWQAPLWKA 171 + ++L QL+ K ADLFDQY +YR DWLA WE G V + E Q WQ LW+ Sbjct: 138 EPQRLLQLAEKLADLFDQYQIYRADWLAAWEKGEDVLRTAGRPDAPVPEGQLWQPQLWRK 197 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 ++ + + R L R ++ L+S L RV + G+S +P +Q L + Sbjct: 198 VLAELDEQ-ERAATRPALLARILDALQSGQPPVTPLARRVVVFGMSQMPLSLMQFLSGIA 256 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 +H ++ + NPCR++W D D L + R+ Sbjct: 257 QHSQVLIAVPNPCRFHWADAIDGRELLRQQRRRHADKGG-----------KDLAQIPLAA 305 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQEL---------DAFVDVT-----PDNLLHN 337 +PLLA+WG+ RDY+ L +++ ++ D + + LL Sbjct: 306 MHAHAHPLLAAWGRQSRDYVRQLDAFDTTGDIAVQWGWPRVDVYDEADASELIDAPLLVQ 365 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 +Q I +L + + D SI FH H RE+EVLHD+LL L Sbjct: 366 VQQRIRDLVPMSEH-----------PAVEIAAADQSIVFHKAHGLVRELEVLHDQLLQWL 414 Query: 398 EEDPT-----LTPRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPV 450 E L PR+++VM+ I+ +P I+AVFG R++P+ I+D AR S P+ Sbjct: 415 AEPAAAGRAVLAPREVVVMLPSIEEAAPAIRAVFGQYGRHDARHIPFDIADVGARASSPL 474 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 + A LL LP R ++ LLDVP +AAR + + L L W+ +GIRWG++ Sbjct: 475 VTALQWLLKLPQQRCRLSELCDLLDVPAVAARVGLAADDLPQLTHWMAGAGIRWGLNHAQ 534 Query: 511 VRELELPAT-GQHTWRFGLTRMLLGYAME-------SAQGEWQSVLPYDESSGLIAELVG 562 +L L A ++ FGL RMLLGYA + + PYDE GL AEL G Sbjct: 535 RAQLGLAACGDPNSAWFGLRRMLLGYASGPALEAAFDEAQVFAGMEPYDEVGGLTAELAG 594 Query: 563 HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAM-TLIEQQWQAIIA 621 LASLL ++ W + A E W R +++ FF+ + + A+ ++ A Sbjct: 595 SLASLLGRMLQWWQTAATAAAPEVWAQRFRSLMDDFFVAQGDEDQALCAALDTALVGWQA 654 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMN 681 A + +PL + ++ Q L + ++QRF AG V CTLMPMR+IPF+VVCLLGMN Sbjct: 655 ACEQAGFEALIPLEVAQEAWLQALSEPALNQRFRAGGVTFCTLMPMRAIPFEVVCLLGMN 714 Query: 682 DGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDN 739 DG YPR+ + FDLM+ + + GDR+RRDDDR L L+AL+SA+ KLYIS+ GR ++DN Sbjct: 715 DGDYPRRATRVDFDLMALPGQQRPGDRARRDDDRQLMLDALLSARSKLYISWAGRHVRDN 774 Query: 740 SERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY-QPGE 798 SE+ PSVLV +L DY+ Q L+ E + A T H PF + Q Sbjct: 775 SEQPPSVLVSQLRDYLRQGWQGEDSAGLSASERGELLLAQRTRQHPLQPFSRSYFEQASG 834 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFR 858 ++AREW A + V + L L F HP R+F + RLQV F Sbjct: 835 LSTFAREWYGAHEERAAQVLPVVAAFEPDPEVPLTLARLTEFLRHPARSFLRNRLQVRFE 894 Query: 859 TEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF----------RRFRAAGDLP 908 ++ + D E F ++GL+ Y + QQL + Q + + AG LP Sbjct: 895 QDEELLEDDELFSVDGLTAYGLIQQLQQGVRTQLAHDAELDVGLQVQRQVQCLGRAGVLP 954 Query: 909 YGAFGEIFWETQCQEMQQL----ADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPD-- 962 G E + ++ + L V + W+ +Q Sbjct: 955 LAGLGRREAEVLQAQATPSLLAWQQQMRLWPHAAPRERLLLHSGAVTLDDWMDGLQEREE 1014 Query: 963 ----------------GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEW 1006 L + L + + +++ L ++G + + +D Sbjct: 1015 PSSDAGHSRCWFALEPRTLLNKKGELQAHKLLPIYVRSLALSSTGSDTLMGVI-ARDTLV 1073 Query: 1007 RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQK 1066 PL E A L L++ + G + PL + ++ A + Sbjct: 1074 WVQPLEPEAATQRLQALMQLWLTGQNEPLPLPLKAAIA------------------AGRD 1115 Query: 1067 ARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLFRF 1119 QAYEG M+ GE +D + R + T + +++ PL + Sbjct: 1116 ELNAAAQAYEGGYMLGGECEDPSWARCYPDWEALTADLRFHVLAKQVYGPLHDW 1169 >UniRef50_C4ZM87 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Thauera sp. MZ1T RepID=C4ZM87_THASP Length = 1218 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 363/1243 (29%), Positives = 541/1243 (43%), Gaps = 181/1243 (14%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 H NR++ L + + + L P E E+ILVQS GMA+W++M ++++ G+ A Sbjct: 18 FIALHGNRIETLLDTVAGWLAQHPLA-PLESEVILVQSNGMAEWVKMAIARRAGVCAAAA 76 Query: 62 FPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 LPA F W + +VL +P S +K +++W+LM LLP++L F + YL D+ Sbjct: 77 VQLPARFQWQTYRQVLGRAQVPARSPLDKTALAWRLMRLLPEVLAEPGFAPVAGYLADN- 135 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL------------------------V 155 D + FQL+ + ADL+DQY V+RPDWL W G Sbjct: 136 DPGRRFQLALRIADLYDQYQVHRPDWLDAWGEGREALPDAGRGETPLTGRGETPLAGRGE 195 Query: 156 EGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP-----SR 210 L E Q WQA LW+ +V+ Q R L+ R + L++ P R Sbjct: 196 TPLPEDQRWQARLWQRVVDEL-DPQQRALTRPQLHDRVLAALDAIAEDAALHPAAALPRR 254 Query: 211 VFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFE 270 V + G++ +P LQ L AL +H ++ L NPCR++W DI D ++ R++ Sbjct: 255 VVLFGMTHVPLPTLQLLAALSRHAQVLLAIPNPCRFHWADILDGREWLRIARRRQPLRDG 314 Query: 271 DRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-------- 322 Q D +PLLA+WG+ RD++ L + +++ Sbjct: 315 RE-----------LQDVGLDAMHLHAHPLLAAWGRQARDFVRQLDAFDDAEQTRARFPLA 363 Query: 323 -LDAFVDV------TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSIT 375 +D F D LL +Q I +L A P+ D SI Sbjct: 364 RIDLFDDDQDTHDVAQPTLLVQVQRHIRDLTPLAEHPH-----------PPVPAEDRSIV 412 Query: 376 FHVCHSPQREVEVLHDRLLAMLEE---DPTLTPRDIIVMVADIDSYSPFIQAVFGSAP-- 430 FH+ HSP RE+E+LHD+LLA+L D L PRDI+VMV ID ++P I+AVFG Sbjct: 413 FHLAHSPVRELEILHDQLLALLARPPGDKPLRPRDIVVMVPSIDDFAPAIRAVFGQYGRH 472 Query: 431 ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGL 490 R++P+ I+D AR S P++ A LL + R D+ ALLDVP +AARF + EEGL Sbjct: 473 DPRHIPFDIADLSARASSPLMGAVEWLLRIRHDRCRLSDLGALLDVPAIAARFGLAEEGL 532 Query: 491 RYLRQWVNESGIRWGIDDDNVRELELPAT-GQHTWRFGLTRMLLGYAME----SAQGEWQ 545 L W+ +GIRWG+D + L L A Q++ FGL RML+GYA + + Sbjct: 533 PRLTGWMRGAGIRWGLDARHRAGLGLQACGEQNSALFGLRRMLMGYAAGRSEVTTDAPFA 592 Query: 546 SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF-LPDAE 604 + PYDE GL AEL G LA L+ +L W+ + W R +L D Sbjct: 593 GIEPYDEVGGLDAELAGALAHLVERLIRWQADSRRPATPAAWTQRLRALLADLVRAVDDT 652 Query: 605 TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTL 664 + ++ + + A + +PL++ + L+ + +RF AG V CTL Sbjct: 653 DRQTLAALDDALERWLEACDEAAFEAELPLAVAAEAWLAALESPALDKRFRAGGVTFCTL 712 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALIS 722 MPMR+IPF+VVCLLGMNDG YPR+ FDLM+ + + GDR+RRDDDR L LEAL+S Sbjct: 713 MPMRAIPFEVVCLLGMNDGDYPRRSPRSDFDLMALPGQQRPGDRARRDDDRQLMLEALLS 772 Query: 723 AQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTC 782 A++ LY+S+ GR+++DNS + PSVLV +L DY+ V A T Sbjct: 773 ARRVLYLSWCGRNVRDNSVQPPSVLVAQLRDYLAAGW-------------SPAVVAERTV 819 Query: 783 LHTRMPFDPQNYQPGE-RQSYAREWLPAA---------------------------SQAG 814 H PF + ++PG +YAREW A G Sbjct: 820 EHPLQPFSRRYFEPGTPLLTYAREWRAAHVEAAAQDDAVPSHDGQANREATGRATRPTRG 879 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 +A S + P + + L F +PV+ FF+ RL V + D +PD E F +G Sbjct: 880 EAASPPLPPFVPDPAVPLTIAALAAFLRNPVKVFFRERLGVVYEDVDEALPDDEAFGFDG 939 Query: 875 LSRYQINQQ---------------LLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 L + + ++ L+A + E R AG LP G G Sbjct: 940 LEEHGLVEELAAAVLADLALLPPPELHAFALEAAVEAQLGRIERAGRLPIGGLGLRARAA 999 Query: 920 QCQEMQQLADRVIACRQPGQS-------------------MEIDLACNGVQITGWLPQVQ 960 + + L R ++ + + + WL Sbjct: 1000 LGEAVLPLLRAWRLVRASHPLDAERGNLRFAHAGALMEDWLDHRVRADEHALPSWLAHDP 1059 Query: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 L L + + W+ L+ A+ L + +D P A L Sbjct: 1060 GRLLEDADKGTLRPWRLLLPWVRSLLAAAADS-PSGGLLVGRDATVHIVPTDPAVARALL 1118 Query: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 ++LIE + G+ PL V + A + K +AYEG+ Sbjct: 1119 ARLIEAWIAGLGEPLPVAARTALALV--------------------GEGKPAEAYEGSEH 1158 Query: 1081 VRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLFRFNQS 1122 RGE ++ R + + ++ PL + S Sbjct: 1159 RRGEVEEASLARCYPDYAALIEDGRFEHLARALYGPLLEWMDS 1201 >UniRef50_Q60AZ6 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Methylococcus capsulatus RepID=Q60AZ6_METCA Length = 1138 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 321/1191 (26%), Positives = 515/1191 (43%), Gaps = 133/1191 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L ++ SNR ++L + + + DPF E ++V S + + L++ + +FG+ AN++ Sbjct: 5 LNIFFSNRFEILTQRLFDDLAQGP-ADPFVAEQVIVPSLAVRRRLELDHADRFGVCANVE 63 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 F A ++W +V+ E+ S F +++W++ +L + L+ YL +D Sbjct: 64 FSYLAHWLWVQIGQVI-EVGASSPFAPATLTWRVFRMLGEEALVSAHPRLKSYLA-RADG 121 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE----AQAWQAPLWKALVEYTH 177 F L+ + A L +QYL YRPDWLA W G GL E +AWQA W+ LV+ Sbjct: 122 AMRFDLAQRVAHLLEQYLTYRPDWLAAWLEGRPASGLPEASREDEAWQAAFWRTLVDELE 181 Query: 178 QLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 R H + + R +E + T GLP+R + + +PP+YL L L + E+H Sbjct: 182 V---RREHPSAAFFRAVEAMGPEATRRAGLPARAHLFCLPTIPPLYLDILGKLARWTELH 238 Query: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 L NPCR YW DI DP L L R ++ GN Sbjct: 239 LYVLNPCREYWFDIVDPRRLNYLEVR------------------------GDALYRETGN 274 Query: 298 PLLASWGKLGRDYIYLLSDLESSQELD--AFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 LLA+WG+ + +I LL D +D F +LL +Q IL+L + Sbjct: 275 RLLANWGQQTQAHIDLLFDKAEGAVIDDAQFEPPARISLLAAVQEAILDLRDPEPGCCAS 334 Query: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 D SI HVCHS RE+EVLHD+LLA+L DI+V++ + Sbjct: 335 V------------AGDRSIEVHVCHSLVRELEVLHDQLLALLARPDAPKVSDILVVMPRL 382 Query: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 + +P I AVFG+APA R +PYAI+ R ++P A ++LL L SR + V L Sbjct: 383 EEAAPLIDAVFGTAPAARRIPYAITGLRRTVANPAAAALLTLLGLFASRCKASAVYEFLQ 442 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 P++ ARF + + L + W +GIRWG++ + + + LP +H++ GL R+ LGY Sbjct: 443 RPLVHARFGLGLDDLECIHDWFQAAGIRWGLNGAHRKAVGLPEVERHSFCDGLDRLFLGY 502 Query: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 A+ ++ LP G A +G A + L W R + + W ++ Sbjct: 503 ALGDVPVQFDGRLPAGSPEGSEALALGGFAHFVDLLTHWHRVWSTPATAQTWGERLNAVV 562 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 AF + ET + + + A+ A + ++R L LD Sbjct: 563 GAFLMETPETVPDLQEVREAIAALSRHWGEAAVTGTIEPEVVRVALESLLDD-PARGGTP 621 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL 715 +G + + +RS+P++VVC++G+NDG +P P FDL++Q P+RGDR RR D+R L Sbjct: 622 SGRLTFTAMASLRSLPYRVVCVIGLNDGEFPHPDRPAEFDLIAQAPRRGDRQRRYDERNL 681 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 FL+ L++A+++LY+SY GRS++DN+ PS + + ES Sbjct: 682 FLDLLLAARERLYLSYTGRSVRDNAPLPPST-------LLSELLDYLLPLVAAAGESPEE 734 Query: 776 VKAHLTCLHTRMPFDPQNYQP-----GERQSYAREWLPAASQAGKA-------------- 816 + L H F P + S+ E+ A A Sbjct: 735 ARRRLVVEHPLQAFSPVYFDAAVAKDPRLVSFNSEYCEALRAARSPRPSGEGVRACESHS 794 Query: 817 ------------------------------------HSEFVQPLPFTLPE--TVPLETLQ 838 F P+ PE L+ L+ Sbjct: 795 QEPEECSAILAERERADHGPAGPIAGEEQNDPDFEHAPFFPAPMAAPEPEWREPNLDVLK 854 Query: 839 RFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF 898 RF+ +P R + RL + ++E+ D EPF+ +R ++ ++LL ++ E + Sbjct: 855 RFFRNPCRYLLEQRLGLTLAEGEAELADDEPFLPAYFARGEVAERLLPLMLSAATEEAVE 914 Query: 899 RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ------SMEIDLACNGVQI 952 RA + P G GE+ + + +++ A+R+ Q + + + Sbjct: 915 VVARAGIEFPQGQLGELLLKGELTRIREYAERIAGQTQEEPLQPLPGRLAFQIEGETWTL 974 Query: 953 TGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASG--GNGESRLFLRKDGEWRFPP 1010 +G L QV GL+RWR + WL+HL A G + ++ +DGE+R P Sbjct: 975 SGALGQVWRRGLVRWRYDDTRPVDYLSGWLDHLFLNALAVRGVEPTTTWISRDGEYRLRP 1034 Query: 1011 LAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTK 1070 +AA A L +L+ YREG+ PL P S A Q A + Sbjct: 1035 VAA--AQERLRELVALYREGLRLPLHFFPRSAWACALGLKQG----------GSQAAERQ 1082 Query: 1071 FLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 + +EG+ RGE +D+ Y++ R A + PL + Sbjct: 1083 ARKRWEGSGDRRGESEDLAYRQALRGQADPLDGAFFRTVRTVFGPLLDHLE 1133 >UniRef50_B5JRL4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL4_9GAMM Length = 1150 Score = 791 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 379/1187 (31%), Positives = 567/1187 (47%), Gaps = 135/1187 (11%) Query: 13 LEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK-----FGIAANIDFPLPAS 67 + L L P E+ LVQS GMAQWL++ ++ GI A F +P+ Sbjct: 1 MLKLAINWQAEHPLP-PLAEEVFLVQSNGMAQWLKLNIAADREDGGLGIQAGQRFEMPSR 59 Query: 68 FIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK---R 122 F+W + VL +P S ++K ++ W+LM LLP+L+E + F +LRHYLT D + R Sbjct: 60 FLWSAYRAVLGNDKVPTASPYDKATLQWRLMRLLPELVEDDAFRVLRHYLTSDDETVATR 119 Query: 123 KLFQLSSKAADLFDQYLVYRPDWLAQWET---------GHLVEGLGEAQAWQAPLWKALV 173 K +QLS + AD FDQY VYR DWL W G L WQA LW+ L+ Sbjct: 120 KRYQLSQQLADTFDQYQVYRADWLEDWAQQRDRLSRFGGQQARALPAEDHWQAQLWRRLI 179 Query: 174 EYTHQLGQPR---WHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL 230 + P R +++RFI+ L S LP R+ + G+S+LP L+AL A+ Sbjct: 180 DDIETDSTPSHSVLSRGQIHRRFIDALHSGRDYSAYLPPRITVFGLSSLPYQTLEALAAM 239 Query: 231 GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSD 290 G H ++ L+ NPC++YWGDI+ + A + + Sbjct: 240 GLHTQVMLMVHNPCQHYWGDIR-----------------------QHAPTRQAVKDAVAA 276 Query: 291 GEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-------LDAF---VDVTPDNLLHNIQS 340 + PLLA+WG+ GRDY+ LL++ + ++ +D F D LL Q Sbjct: 277 EHSESEQPLLATWGQQGRDYLQLLAEFDQPEDYQQHFEKIDVFNSPADNASPTLLQQWQH 336 Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 I +L++ + + S D S+ FH CHS QREVEVLHD+LL E + Sbjct: 337 SIYDLQSLPEEKNILSKDSL--------EGDRSLRFHSCHSAQREVEVLHDQLLDAFERN 388 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSA-------PADRYLPYAISDRRARQSHPVLEA 453 P L P+D+IVMV DI Y+P I+AVFG RYLPY ISD + ++P + A Sbjct: 389 PALRPQDVIVMVPDIQRYAPHIEAVFGLYKPRTGQERDPRYLPYTISDSSLKSANPTVNA 448 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 LL RF D+L LL+ P L RF + L+QW+ ++G+RWG++ + + Sbjct: 449 IEQLLHSDQLRFSLSDILGLLESPALQRRFGLENSDPSLLKQWLEQAGVRWGLNREQRAQ 508 Query: 514 LELPATG--------QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA 565 +LP+ +TW FGL R+LLGY+ E+ W + P S AE +G L Sbjct: 509 HDLPSESSEPSEALSANTWAFGLNRLLLGYSSEAR---WNGIEPSAPFSNSDAEAIGALW 565 Query: 566 SLLMQLNIWRRGLAQERPLEEWLPVC-RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL 624 L+ L+ + + L + +W + +L F D + + + Sbjct: 566 RLINTLDGFSQSLQHAKTPSQWSQFIGQTLLEFFDSDDDSDAPLFDALNHALEQWLDACQ 625 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGV 684 A + DA+PLS++R+EL LD ++QRFLAG +N +LMPMR++PFK+VCLLG+NDG Sbjct: 626 RADFNDAIPLSMVREELLPALDDSGLNQRFLAGCINFASLMPMRAVPFKMVCLLGLNDGD 685 Query: 685 YPRQLAPLGFDLMSQKP--KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742 YPRQ FDLM ++ + GDRSRRDDDRYLFLEA +SA++ LY+S++GRSI+DNS R Sbjct: 686 YPRQQPRQDFDLMRRREHYRPGDRSRRDDDRYLFLEAALSAREALYLSWVGRSIRDNSVR 745 Query: 743 FPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQN---YQPGER 799 S+L+ +L D I L ++ + +LT H P+ Q + Sbjct: 746 AQSILLAQLRDDIAARFQLDN-------DAHPTLLEYLTLEHPLQANSPRYLDTLQSAQY 798 Query: 800 QSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 +YAREW + + + ++ + +T+ L L+ P F + RL++ F Sbjct: 799 FTYAREWFDEPRSSDRNTT--LKAIDSNEAQTLSLSDLRLLLRQPCDVFLRQRLKIAFDD 856 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVE-------QDDAERLFRRFRAAGDLPYGAF 912 D + D EPF L+GL RYQ+ Q LL + +R R+ ++G LP G F Sbjct: 857 GDDSVLDHEPFSLDGLDRYQLGQSLLEDGAQDLSPSGLNAALDRAKARWLSSGQLPPGEF 916 Query: 913 GEIFWETQCQEMQ----QLADRVIACRQPGQSMEIDLACN-GVQITGWLPQVQPDG---- 963 G E + ++ + ++ A QP I LA G + W ++ Sbjct: 917 GLTLIEQRLDDVADTLSRYREQSQALIQPLPPQAIVLADELGWTLEDWTRELASTASGTP 976 Query: 964 ---LLRWRPSL------LSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAE 1014 + P L + + WL HL + G L L ++G R P+ AE Sbjct: 977 HYYQINLTPGTLRSGRQLKYHRLLNDWLNHLAASSLG-YSLHTLILCEEGGVRISPMPAE 1035 Query: 1015 QALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQA 1074 QA HYL QLI YR ++ PL + E+G A+ T A+ + ++AR++ A Sbjct: 1036 QAAHYLKQLISAYRNALAQPLPIQLEAGCAYAHTLATAKANHE-------EQARSEAQNA 1088 Query: 1075 YEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 YE + + ++ LW E + + PL Q Sbjct: 1089 YESRLSASQQRCYASFEVLW-----EHSGEFLRWMETLYQPLVEHTQ 1130 >UniRef50_Q480N8 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480N8_COLP3 Length = 1198 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 330/1201 (27%), Positives = 559/1201 (46%), Gaps = 150/1201 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M+ +Y +N+++ L L+ I + L F E+I+VQ+ GM WL + ++Q+ GI+ N+ Sbjct: 1 MIHLYPANKMENLLLLLNKISQLSPL-GVFNQEVIVVQNAGMQHWLNLAIAQERGISMNM 59 Query: 61 DFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLL--PQLLEREDFTLLRHYLT 116 + LPA F+W + + + +P++S ++++ + W++ LL ++E +DF+ HY Sbjct: 60 RYALPAQFLWKLIRSLASDEKVPEQSPYSREVLCWRIHALLALDSVVEDDDFSQATHYWR 119 Query: 117 DDSD---------------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-LVEGLGE 160 ++ + K +QL+++ ADL++QYL++RP WL W+ G+ ++GL + Sbjct: 120 GENTTDEEDNNTVNDSKHAQLKRYQLATQLADLYEQYLIFRPQWLDNWQQGNFELDGLEK 179 Query: 161 ----AQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGI 216 WQ LW+ L+ H + + + +P R+ G+ Sbjct: 180 ISASEHKWQGKLWRLLIAQLPYNPVELMH---------DAIANIQDKKELIPPRISFFGL 230 Query: 217 SALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL 276 + + P++L + AL +H+E+H NPC YWGD+ Y L++ Sbjct: 231 NTMAPMWLNFINALSEHVEVHFFHLNPCFSYWGDVVTEKYALNKLSQW------------ 278 Query: 277 FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTP----- 331 + D VGNPLLA+ G+ GR++I +L D + +++ F Sbjct: 279 ----SDGVLPEELDVHSYVGNPLLANLGQQGREFISMLQDYSTI-DVELFEQAKSAQAIS 333 Query: 332 -----DNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREV 386 ++LH +Q+DILEL + + D SI CHS REV Sbjct: 334 NNNDVTSVLHQLQNDILELSDARSPDDEAITPKAVQH-------DDSIVITSCHSALREV 386 Query: 387 EVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGS-----APADRYLPYAISD 441 + LHD LL +D +LTP+DI+VM I+ Y+P++ AVF A LP +I+D Sbjct: 387 QALHDYLLHQFNQDKSLTPKDILVMCPQIEQYAPYVNAVFTRGWQDIAGEVPPLPCSIAD 446 Query: 442 RRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESG 501 R A+ S P++ AF LL+LPDSRF +L+ L +P +A F I E L + W+ ++ Sbjct: 447 RSAKDSDPLVAAFTELLTLPDSRFGVSQLLSFLRLPAMANNFSINGEDLAKISAWLEQAT 506 Query: 502 IRWGIDDDNVREL-ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL 560 + WG+D + + L A TW+ GL+R+L G+A ++ +Q L G + L Sbjct: 507 VHWGLDLTHKQSLLGQQANASFTWQQGLSRLLRGFAYADSEQIYQQQLLLSNVEGSDSIL 566 Query: 561 VGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF----LPDAETEAAMTLIEQQW 616 +G L + QL+ + L + R +W + L+ F + E ++ +IEQ Sbjct: 567 LGQLMLFIEQLHYFSENLQRSRTAIQWQTFLLEQLSHLFSRVDADNVSNENSLMVIEQAI 626 Query: 617 QAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVC 676 ++ A + D + L ++ D L+Q Q S++F+ G V C+++PMRSIPFKV+ Sbjct: 627 AGLVEHCHHAHFEDDISLLIVVDYLSQHFSQGDASKQFMVGQVTFCSMLPMRSIPFKVIA 686 Query: 677 LLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 +LG+NDG +PRQ LGFDLMS K K GDRSRR DDRYLFLEA+IS++ LY+SY GR+ Sbjct: 687 VLGLNDGEFPRQRQALGFDLMSLSKAKLGDRSRRGDDRYLFLEAIISSRNSLYLSYQGRN 746 Query: 736 IQDNSERFPSVLVQELIDYIGQSHYLPGDEA-----LNCDESEARVKAHLTCLHTRMPFD 790 I++N+E+ PS++V+EL++Y+ Q + E N D++ A F Sbjct: 747 IKNNNEKQPSLVVKELMEYLAQGYGWQFSEEQLTSDNNNDDTNAESNQSGIYQLAMQAFS 806 Query: 791 PQNYQPGERQSYAREWLPAASQA--------GKAHSEFVQPLPFTLPETVPLE----TLQ 838 P NY+ G S+ WL + G+ + ++ L T +TV + L Sbjct: 807 PNNYR-GTWPSFDANWLALGQSSNSDNDESMGEGSTLAIESLAVTPEQTVEVSLSCQQLI 865 Query: 839 RFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ------- 891 RF+ HP + F Q +L + F D + D EPF + L Y + Q LL+A + Sbjct: 866 RFYQHPAKMFAQQQLNLYFENHDVLLEDVEPFSVNHLQSYLLRQDLLSAALTGTIESPSN 925 Query: 892 -DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSM---EIDLAC 947 D +E++ R +G P ++ ++QQ ++ + + + L Sbjct: 926 KDGSEQVITRAHLSGKFPDLPTTTNLFKDYQLDVQQFSEEISKVNCENPELIDCNLVLDI 985 Query: 948 NGVQITGWLPQ-----------VQPDGLLRWRPSLLSVAQGMQLWLEHL---VYCASGGN 993 +G ++ G Q V+ + L+ +R S ++ + L V+ Sbjct: 986 DGTEVDGPSAQKIRVSLNTKLAVKNNLLVHYRSSSAKAKDKFVMYFQQLVVQVWQDQAIA 1045 Query: 994 GESRL-----------------FLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPL 1035 E+ + F K + F A L L++ + +G L Sbjct: 1046 NETNITDDNQRLQQVTETIGLYFNTKAQKVEQFNVANIADAKSKLINLVKMFFKGQQQVL 1105 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR 1095 L+ G + + +++ +F + G+M RG DD + W Sbjct: 1106 LL----NGELADQVFTKKRGQLVEMTQA------RFEGLWIGDMSTRGLSDDDYLSYFWP 1155 Query: 1096 Q 1096 + Sbjct: 1156 E 1156 >UniRef50_P57528 Exodeoxyribonuclease V gamma chain n=4 Tax=Buchnera aphidicola RepID=EX5C_BUCAI Length = 1070 Score = 788 bits (2034), Expect = 0.0, Method: Composition-based stats. Identities = 307/1118 (27%), Positives = 571/1118 (51%), Gaps = 51/1118 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y SN L+ L I+E + + FE E+ + + + Q+L + +++K GI+AN Sbjct: 1 MFTIYKSNSLNTLLLKAYHIIEEKPFSNIFEKEIFIYDNKVLFQYLNIFIAEKKGISANF 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F P FIW +F +L + ++ F + W+++ +L E+ + D Sbjct: 61 KFYHPNDFIWKLFKIILSKKELKNIFTHSMIIWEIIKILDNKKFFENCS-------KKKD 113 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 K F+ S A +F +Y++YRP+W+ QWE + + + WQ LW ++ T ++ Sbjct: 114 MIKKFKFSFLMASIFKKYILYRPEWINQWEIEKNISIFDKNEQWQIKLWMEIIHNTKKIN 173 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 Q H ANL+ + ++ LP R FI ++ P Y++ Q + + +I+ L+ Sbjct: 174 QSSDHFANLFYNIQKIIKEKKIKKKYLPKRFFIISSFSMNPSYIKIFQNISIYTDIYFLY 233 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 P + + +D ++ E L + L+ Sbjct: 234 ITP-----------------FKKNIFNFIQDNKIFTDIKIEKKNILND---------SLI 267 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 WG+ Y + + + ++ ++ F +LL I+++ + Sbjct: 268 TLWGQYEEIYYFYILKSKKNKVINCFKKNKNKSLLSQIKNNFFN------------DSEF 315 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 + KR L+ D SI+ ++C + + E+EVL+++LL L E+ ++ P DI+V +D+Y Sbjct: 316 TRKKRFLEISDHSISINICFNKKNEIEVLYEKLLIFLNENSSIKPGDIVVTSFSLDTYIS 375 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 I +F S + +P+ I+ + ++ + +L +F +L+L +SRF +E++L LLDVP +A Sbjct: 376 SINLIFQSIDNKKTIPFFIAKKSSKTTEIMLWSFKKILNLSNSRFENEEILELLDVPEIA 435 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 +F+ +EE ++ L W+ E+ IRWGI++ + L P Q+TW +G+ ++LL YAM Sbjct: 436 EKFNFSEEEIKILYHWIEETNIRWGINEKHKNYLLFPKNKQNTWFYGIEKLLLSYAMNDT 495 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 + W VL +G +EL+G L S + L W++ L++ + L W + D+++ FF Sbjct: 496 EKIWNGVLSCSFINGSRSELIGKLISFIKILEKWQKKLSKLQYLTYWRSLYSDLVSDFFQ 555 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 + + E ++ +I+++W II + L + Y + +++L+ + + FL G VN Sbjct: 556 NNTKIEKSIQIIQKKWIEIIDDSLSSNYLKKISINILKKIFFYKYYD-NNHEIFLPGVVN 614 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 C + IPFKV+C++G + P+ F+L+ + P GD + YLF+++L Sbjct: 615 FCYPDSVCYIPFKVICMIGTDHTSIPKTNYLDNFNLLKKYPLIGDINLYQKYSYLFVQSL 674 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 A++ YISYIG S++D S+ PS+LV +L++YI + GD+ L+ E+ ++ +L Sbjct: 675 SCAEKYFYISYIGYSVKDESKVHPSILVDQLLNYITLNFCFIGDQNLSYKENSKKITKYL 734 Query: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 H + F Y+ +S+ ++ + + + + L + L+ L F Sbjct: 735 CKKHKKQFF----YETKNIESFIQDDIKNDFKHTEKNISHKNLLKKNTDNEINLKDLINF 790 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 W HP+R F+ L++ R + +I TE F++ L+ ++I +LL+ ++ + +L++ Sbjct: 791 WKHPIRYFYNSHLKIKIRQKKQKINTTETFLVNPLNSFKIKNKLLDYIIHNKNITKLYQH 850 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ 960 + +G LPY FGEIFW +EM+ +A++V+ R + +I+L QI G L ++Q Sbjct: 851 YLLSGKLPYHFFGEIFWIKNIKEMKLIANKVMQYRIEKEEKKINLNIEKYQIYGVLSEIQ 910 Query: 961 PDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYL 1020 GLLRW+ S + + + LWLEHL+Y GG G+S++ K W F L + +A YL Sbjct: 911 STGLLRWKTSSIRYSDRIALWLEHLIYSILGGCGKSKIIGYKSQIWSFSSLNSHRAHSYL 970 Query: 1021 SQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMM 1080 + I+GY +GM PL L +SG +WL YD +N+ + +D T KA K L ++G+ Sbjct: 971 LEYIKGYIKGMKEPL-FLTKSGASWLDQVYDERNNCIKNDYYTKIKAYKKLLYTWKGDNY 1029 Query: 1081 VRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 GE +D + ++ + ++ I E ++++L+P+ + Sbjct: 1030 TEGEQEDYYLKKTITISNKKNIKKICESAEKWLIPILK 1067 >UniRef50_A1SDB1 DNA helicase/exodeoxyribonuclease V, gamma subunit n=2 Tax=Actinomycetales RepID=A1SDB1_NOCSJ Length = 1113 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 303/1164 (26%), Positives = 503/1164 (43%), Gaps = 110/1164 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG------ 55 L+++ ++R DVL + ++ L DPF E+++V + G+ +WL LS + G Sbjct: 3 LQIHRASRTDVLADALGDLLRT-PLADPFAEEVVVVPAKGVERWLTQRLSHRLGAGPRGD 61 Query: 56 --IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 + A + F P S + + R ++ ++ + + W L+ + + L +F L Sbjct: 62 DGVCAGVRFLNPRSLVSLLLGR-----ERDDPWDPERLVWPLLATIDESLGEREFATLGR 116 Query: 114 YLTDDSDKR-------KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVE-----GLGEA 161 +L D + + ++ + A LF Y + RP + W G E GL Sbjct: 117 HLGHGVDGADGELRRNRRYSVALRLAHLFASYALQRPSLVTAWREGRDGEHGGEQGLPPD 176 Query: 162 QAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPP 221 AWQ LW+ L+ H + L++ P LP R+ + G + +P Sbjct: 177 LAWQPELWRRLIAQVDAPPPDVRH-----AQTCAALQAGGDGLP-LPDRLSLFGHTRIPV 230 Query: 222 VYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSE 281 + L+ALG+H ++HL P W D+ D Sbjct: 231 TEVALLKALGEHRDVHLFLPQPSPVLWDDLAD-----------------------LGGPG 267 Query: 282 NAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV-----TPDNLLH 336 D + VG+PLLAS G+ R+ LL + S + P LL Sbjct: 268 GVVPRAADDSVERVGHPLLASLGRDARELRRLLDGVSSEEVRPPAGTPTGSTTDPVTLLG 327 Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 +Q D+ + + R LDP D S+ H CH P R+V+VL + L+ + Sbjct: 328 WLQHDLRANHAPS---------YDERSTRELDPDDHSLQVHACHGPARQVDVLREVLVGL 378 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD----RYLPYAISDRRARQSHPVLE 452 LE+DPTL PRD++VM DI++Y+P I A FG A D L ++DR ++P+L Sbjct: 379 LEDDPTLEPRDVLVMCPDIETYAPLISAGFGLATTDGHPAHRLRVKLADRALTSTNPLLA 438 Query: 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVR 512 LL L R + DVL L + RF T++ L + +WV +G+RWG+D+++ Sbjct: 439 VAGDLLDLAGGRVTASDVLDLAGTDPVRRRFGFTDDELDRVSRWVARAGVRWGLDEESRA 498 Query: 513 ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSV-LPYDESSGLIAELVGHLASLLMQL 571 + +TWR GL R+LLG AM LP D+ + +L G LA L+ ++ Sbjct: 499 AFRMERFPHNTWRTGLDRILLGVAMSGDDHHHLGRGLPLDDVASSEIDLAGRLAELVARV 558 Query: 572 NIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 + LA R + +W RD + + A+ + E++ A + G Sbjct: 559 DRTLTVLAGARTVADWATGLRDGVRSLVDVAADDAWQVPQFERELGR--AAASSHEGGLE 616 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + L+ +R L RL F G + + T++PMRS+P +VVCL+G++DGV+PR A Sbjct: 617 LRLADVRAMLESRLAGRPTRANFRTGSLTVATMVPMRSVPHRVVCLVGLDDGVFPRAGAV 676 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 G D++ + P G+R R +DR L L+A+++A + L I+Y G Q + P+V + E+ Sbjct: 677 DGDDVLGRHPLTGERDVRSEDRQLLLDAVLAATEHLVITYSGADEQSGASLPPAVPLGEI 736 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAAS 811 +D + + A V+ + H P+D +N+ S+ L A Sbjct: 737 LDAADR-------------TTNAPVRDRVLTRHPLQPYDARNFTRERPFSFDTAALAGAR 783 Query: 812 QAGKAHSEFVQPLPFT---------LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 A E L V L+ L+ F HPVRAF + RL V E Sbjct: 784 SARGVRREPPPLLDGPLPPRLALDGRAADVSLQDLRDFLGHPVRAFLRGRLDVATPFEPD 843 Query: 863 EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQ 922 ++ D P L+ L ++QI +LL L+ D + + AG LP G + + Sbjct: 844 DLADAIPVSLDSLEKWQIGDRLLRQLLAGQDPVAVLTAEQLAGTLPPRGLGTLALHEVAE 903 Query: 923 EMQQLADRVIACR-QPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQL 980 E Q+L R R +S+++D+ +G ++TG +P V ++ S L+ Q + Sbjct: 904 ECQRLWSRTADLRDGERRSVDVDVDLRDGRRLTGTVPGVYGSRVVSLGYSRLNARQRLHA 963 Query: 981 WLEHLVYCASGG-NGESRLFLRKDGEWRFPPLAAE---QALHYLSQLIEGYREGMSAPLL 1036 W++ L A+ + + KD L +A+ +L L++ G+ APL Sbjct: 964 WVDLLALSATYPDQHWTAHAVGKDRAGPKRALCGPLDHRAVGWLRDLVDLRDRGLCAPLP 1023 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 V ++G AW + M D ++ AR ++ + GE D ++QR++ Sbjct: 1024 VPVKTGAAWADAHAR---ELMGQDHPPVEAARREWETDPHNQFGITGEDADPYHQRVYGP 1080 Query: 1097 LTP---ETMEAIVEQSQRFLLPLF 1117 P + E + PL Sbjct: 1081 AAPVEALLDAGLGEHAWAIWEPLL 1104 >UniRef50_C1SHH5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH5_9BACT Length = 1038 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 265/1125 (23%), Positives = 481/1125 (42%), Gaps = 102/1125 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y NRL+ L M+ + P I +Q+ GM +W+ + L++ GI+AN+ Sbjct: 1 MLKIYTGNRLERLLEKMDMNICSAG-SGPLTKVPICIQTPGMQRWIGIKLAELTGISANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAF-NKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 DF P + + + E ++ + K + WK+ + L L + + +R+YL D Sbjct: 60 DFIFPGALMKRLAGVGAGE---KAPWPEKNELVWKVYSKLNSLPSEQFYEHIRNYLEGDI 116 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEA-QAWQAPLWKALVEYTHQ 178 + + ++L+ + AD+FDQY VYRP + W + E WQ L++++ Sbjct: 117 NGIRAYRLAGRIADVFDQYQVYRPQMVLDWLSVKPKNPPVEDNDIWQMELFRSIF----- 171 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 + ++ +FI+ P L + + I GIS LP +++ L+A ++ +I+ Sbjct: 172 -PHGSGCKTTIFDKFIKNCTKGANNCPALKTPIHIFGISVLPAFFIEMLKAASQYTDIYF 230 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 +P R YWGD K +L ++ + + + Sbjct: 231 YLLSPTRQYWGDSKTIREKRRLEKITQKS--------------------AEELYIEEKHE 270 Query: 299 LLASWGKLGRDYIY-LLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 LL + G +GRD+ L +S + + D+ +++L +Q++IL+LE Sbjct: 271 LLDNLGVIGRDFFDYLFGSDDSFLTEEEYFDIAKNSVLQTVQAEILDLEYGNEK------ 324 Query: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 D+SI + CH+P RE+E L+D+LL + D TL P DI+VM DI+ Sbjct: 325 ----------PSHDNSIIINNCHNPLREMETLYDQLLELFNNDQTLRPSDILVMTTDIEK 374 Query: 418 YSPFIQAVFGS-APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y+P+I+AVF + +PY+I+D +Q++ F+ LLS F DV+ +L Sbjct: 375 YAPYIKAVFDNPYSERERIPYSIADVSEKQTNRPAGIFLELLSTLRGDFSLADVMRILSY 434 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 ++A +F I L L + +G W +++R+ L TW L R+ LG A Sbjct: 435 DLIADKFSIKRSDLSTLSTMLQNAGAMWSYGREHLRKEGLTIDDTFTWERALRRVALGLA 494 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 S+ + ++ +G L + + + E+ + EW + + + + Sbjct: 495 EGSSGSIYSE-AAVKNVPFSLSVQIGGLMRFADLSSKYAEQMDSEKTIPEWCALMQALAD 553 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 + + + + + I E + +AVP + + + L + L + R ++ F++ Sbjct: 554 DYIKETFDNADDILHLSKCIADINTEAENGDFTEAVPAAPVLERLTESLSETRGAKGFIS 613 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLF 716 G V C ++PMRSIPF+V+C+ G+++ +PRQ L FDLM++ PK GDR+ RD DRYLF Sbjct: 614 GRVTFCAMLPMRSIPFRVICVAGLDENTFPRQKVSLEFDLMAKSPKPGDRNNRDSDRYLF 673 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARV 776 LE LISAQ L +SY G+S +DN+E PS L+ EL ++ + Sbjct: 674 LETLISAQDTLILSYTGQSERDNAELLPSTLITELNTHLKGRFGIED------------- 720 Query: 777 KAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ---AGKAHSEFVQPLPFTLPETVP 833 +T F + + +Y+ + + H P+ +P+ V Sbjct: 721 ---ITLKQKLHSFSRDYFSNEKLFTYSSDKYNTSRAFSSEKTGHRFSTLPIEVQMPDEVS 777 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 L + F+ P F + L++ + D +P+ E + L +Y+I L +E D Sbjct: 778 LADFENFFISPPDYFLRKVLEIRPKLRDESLPENEIMCPDPLLQYKIIDNALRERLEGKD 837 Query: 894 AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-GQSMEIDLACNGVQI 952 + LP G + +L V + +ID A +G+ I Sbjct: 838 PDNALEYLYKTAQLPPENLGRLSITETLNTSMELNRTVTETLGGTPEEQKIDSAIDGLHI 897 Query: 953 TGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLA 1012 +G + V + + +P+ + ++ W+ HL+ C + PP Sbjct: 898 SGTIFGVSGNRYVYAKPASIKPKDIIRGWIRHLLLC--QKASITTTLCGGGNTVEIPPAD 955 Query: 1013 AEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFL 1072 + +L+ L+E ++EG +PL G L + +S Sbjct: 956 S----GHLNNLVEIFKEGHKSPLRFHITDGIRELNDRVLKSSFLEDSHNSVAS------- 1004 Query: 1073 QAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLF 1117 D ++ + T +A +++ + PL Sbjct: 1005 --------------DYAFRICFGADTTLDRDA----AEKIINPLL 1031 >UniRef50_B1XZ24 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZ24_LEPCP Length = 1294 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 369/1277 (28%), Positives = 540/1277 (42%), Gaps = 185/1277 (14%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + H NRL++L + + L P E E++LVQS G+A+WL+M+L+Q+ G+ A Sbjct: 13 LLILHGNRLELLLETVLQWLAAHPLA-PLEEEVLLVQSNGIAEWLKMSLAQRVGVCAATR 71 Query: 62 FPLPASFIWDMFVRVLPEI--PKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD-- 117 LPA F+W + +L P S +K ++W+LM +LP L R F L +L Sbjct: 72 VELPARFLWRCYRAMLGRAGAPARSPLDKGPLAWRLMRVLPALAGRPGFEPLAQFLAGPG 131 Query: 118 ------DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV----------EGLGEA 161 D + QL+ + ADL+DQY VYR DWL W G V L Sbjct: 132 GPTPDAAPDLPRRLQLAQRLADLYDQYQVYRADWLIDWAAGRAVLTNPCTGAAPVALDAE 191 Query: 162 QAWQAPLWKALVEYTHQLGQPRW---------------HRANLYQRFIETLESATTCPPG 206 Q WQA LW+AL+ + R ++ RF+ L Sbjct: 192 QRWQALLWQALIRDLGTTDADQPADAPAESAALAVLAGTRPAVHARFVAALAQDEAPQRP 251 Query: 207 LPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRR 266 LP RV + G S LP L+AL AL H ++ L NPCR++W D+ D L + R++ Sbjct: 252 LPRRVVLFGHSHLPAQTLEALAALAGHTQVILAVPNPCRFHWADMIDGRELLRSAHRRQP 311 Query: 267 HSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ----- 321 + +PLLA+WG+ GRD++ LL E Sbjct: 312 LRNGRD-----------LGALDIADAHAEAHPLLAAWGRQGRDFLRLLDAFEEQLGGAEA 360 Query: 322 --------ELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSS 373 +D F D D LL +Q+ I + A + R D S Sbjct: 361 GALRGELPRVDLFDDEPGDTLLAQVQARIRDAVPLAEHAALNGPPLDAAAARQRAATDRS 420 Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPT-LTPRDIIVMVADIDSYSPFIQAVFGSAP-- 430 I FH+CHS REVEVLHD+LLA L L PRDI+VMV D++ Y+P ++AVFG P Sbjct: 421 IEFHLCHSAMREVEVLHDQLLARLAAAKGSLAPRDIVVMVPDVEVYAPLVRAVFGQYPAS 480 Query: 431 ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGL 490 R++PY I+D R R HP+L A LL + + R + ++ L+DV LA RF + + L Sbjct: 481 DARHIPYDIADLRPRGHHPLLLALEWLLRITEQRCTASELRELIDVAALANRFGLEGDDL 540 Query: 491 RYLRQWVNESGIRWGIDDDNVRELELPAT-GQHTWRFGLTRMLLGYAMESAQ-----GEW 544 L +W++ +G+RWG+D ++ L+L A +TW FGL RMLLGYA+ W Sbjct: 541 PTLGRWLDGAGVRWGLDAEHRASLDLAACGEANTWAFGLRRMLLGYAVGDDPAATPGEPW 600 Query: 545 QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAE 604 + PY E GL A + G LA L+ L W R +W R +L AFF P E Sbjct: 601 HGIAPYAEVGGLEASIAGALAELVEALQRWWREARTAATPADWDARARALLAAFFRPATE 660 Query: 605 TEA-AMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICT 663 E + + A Y +AVPL++LR+ +D+ + RFLAG V CT Sbjct: 661 DERLLLAALHDALAQWREACDEAGYAEAVPLAVLREAWLGTVDEPGLRSRFLAGGVTFCT 720 Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ--KPKRGDRSRRDDDRYLFLEALI 721 LMPMR+IPF+ VCLLGMN+G YPR+ FDL++ + + GDR+RRDDDR L LEAL+ Sbjct: 721 LMPMRAIPFQGVCLLGMNEGDYPRRGVRSDFDLLAAPGQRRPGDRARRDDDRMLMLEALL 780 Query: 722 SAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLT 781 SA+ +L++S+IGRS++DN+ + PSVLV +L DY+ P + L+ Sbjct: 781 SARAQLHVSWIGRSVRDNTAQPPSVLVAQLRDYLAAGWGRP-------------LVDALS 827 Query: 782 CLHTRMPFDPQNYQPGERQ---------------------------SYAREWLPAASQAG 814 H PF + ++ Q +YAREW A ++ Sbjct: 828 VEHPLQPFSRRYFEQTVEQGEPVDGPADETGDETGNDTAALRRGLLTYAREWRAAHARED 887 Query: 815 -----------KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 +P P P + L L RF +PV RL V D Sbjct: 888 AAAAASDPLTAAPTPIDRRPAPADQP-PLKLAMLTRFLRNPVADHLNERLGVRLALADEA 946 Query: 864 IPDTEPFILEGLSRYQINQQLLN-----------------------ALVEQDDAERLFRR 900 + D EP L L + ++L+ A Q + Sbjct: 947 LADDEPLGLHALDESILLRRLVEQGDVQTAQLPASAPAADPESDADAARLQRALQDGSLS 1006 Query: 901 FRAAGDLPYGAFGEIFWETQCQEMQQLADRVI------ACRQPGQSMEIDLAC---NGVQ 951 + G LP GE + + ++ + + R Q + + L +Q Sbjct: 1007 LQRQGILPLAGLGERWQQAFVRQSLPMLAQWRIWQEAAPERAAPQPLNLALPLADGGALQ 1066 Query: 952 ITGWLPQVQ---PDGLLRW--------------------RPSLLSVAQGMQLWLEHLVYC 988 I WL +Q G L W + + + + WL ++ Sbjct: 1067 IDDWLDGLQIEATTGALLWLDLQASRLCAKPGKKDQGKGKAGPVRPDKLYRAWLV-MLAA 1125 Query: 989 ASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKT 1048 + G + + +D P AE A L+ L + APL + P S A L Sbjct: 1126 GAAGIALTGRIVGRDVTLELSPPPAEVARAALADLTGAWWASWRAPLAIAPRSALAALAE 1185 Query: 1049 CYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVR---GEGDDIWYQRLWRQLTPE--TME 1103 + A + Y+G R E D+ R++ + Sbjct: 1186 APVLADADPSGPRPWPLDAWIAAERTYDGGTFTRRVPPESDEPSLARVFADWEALGARAD 1245 Query: 1104 AIVEQSQRFLLPLFRFN 1120 ++R PL + Sbjct: 1246 EFQHWAERLYRPLRAWA 1262 >UniRef50_Q1NSB7 Exodeoxyribonuclease V, RecC subunit n=3 Tax=Proteobacteria RepID=Q1NSB7_9DELT Length = 1155 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 347/1183 (29%), Positives = 539/1183 (45%), Gaps = 104/1183 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVE-----------RERLDDPFEPEMILVQSTGMAQWLQMTL 50 L +Y SNR++ L A +E + P E I+VQS GMA WL+ L Sbjct: 6 LLLYRSNRIEELLACLEAELAVASSAGSSAGSSAGSSAPLTAECIVVQSQGMAVWLEQRL 65 Query: 51 SQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL 110 +++FGI AN DFP P F + VL +++S + L+ LLP+L +R +F Sbjct: 66 AERFGIWANPDFPHPRRFHQRLLQAVLGRQAVADFSHRESFTLALLALLPKLPQRPEFAP 125 Query: 111 LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQ----AWQA 166 L YL D +D K QL+ K A LFDQY VYRP+ + WE G G A+ WQ Sbjct: 126 LARYL-DGADDWKCLQLAEKIAYLFDQYAVYRPEMVLAWERGEEQAGTAGAELADNRWQP 184 Query: 167 PLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQA 226 LW+ L P L + F + P LP R F+ I+ LPP+YL Sbjct: 185 LLWRRLSRQLGSPVAP------LTEAFASLRQGRLAAPELLPPRAFLFAITTLPPLYLNL 238 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L + I IHLL +P R YW DI PA L ++ R + + P Sbjct: 239 LDQAARIIPIHLLLFSPAREYWADIFTPAALREMELRHSDAALLEEGEPAALHLSG---- 294 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSD---LESSQELDAFVDVTPD-NLLHNIQSDI 342 G+PLLAS G + R++ +L + + + + + F + + LL +Q DI Sbjct: 295 ---------GHPLLASLGTVAREFQDILEEQSDYQPATDGERFPENQENPGLLARLQQDI 345 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 +L+ A + D S+ H+CHSP REVEVL D+ L L + Sbjct: 346 AQLKEPAAGEGEESQP---------PTADDSLAIHICHSPLREVEVLQDQ-LLQLLDGEE 395 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLP 461 +P DI+VMV DI++Y+P I+AVF P DR +PY I+DRR + +L+ + + Sbjct: 396 FSPHDIVVMVPDIETYAPLIEAVFNRPPGDRRRIPYRIADRRLSREGELLDTLLRFFEVA 455 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 R VL LL + + L+ + QW+ +S + WG+D+++ + PA Sbjct: 456 RGRLEVSAVLDLLAAEPVRRGLGLDGGQLQRIEQWLRQSRVCWGMDEEHRQHHGQPAQRL 515 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 +TWRFGL R+LLGYAM +A + +LP+ + G + G L +L + + Sbjct: 516 NTWRFGLDRLLLGYAMPAASDVFADILPHADIEGQESVTAGILLRFCEELFALVKLVQTP 575 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 + + +W + + +L + DA ++ + +++E A + L L Sbjct: 576 QTIADWATISQRVLISLGGDDAASDWQELCLRDTLAQLLSEADQAALTRPLELPAFLRLL 635 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 RLD ++ FL G + C ++P+R+IPF VVCLLG+N+ +PRQ FDL++ P Sbjct: 636 RGRLDGAGGTRGFLDGGLTFCNMLPLRTIPFPVVCLLGLNNDDFPRQEPAADFDLLAAAP 695 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 + GDR RR DDR++FLE+L++A+++LYISY+GRS++DN PSVLV EL+ + Sbjct: 696 RPGDRCRRRDDRFMFLESLLAARRRLYISYVGRSLRDNRSLPPSVLVDELLTCLAAMS-- 753 Query: 762 PGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ--PGERQSYAREWLPAASQAGKAHSE 819 P N + RV A T H PF P+ +Q G SYARE+LP + A + Sbjct: 754 PKAAGANDEAHRQRVAARFTVEHPLQPFSPRYFQNTAGPLFSYAREYLPPPASPDAAPAT 813 Query: 820 FVQPLPFTLPE-----------------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 P + L L F+ HP + + RL + + Sbjct: 814 VSGPRAQLPAAADHDSVPPAAWMSTTSTAISLADLHDFFRHPAGWYGRRRLGLLPPQQQP 873 Query: 863 EIPDTEPFILEGLSRYQINQQ--------LLNALVEQDDAERLFRRFRAAGDLPYGAFGE 914 D +P L+ L RY+I + L + + + L+++ RA G+LP G + Sbjct: 874 AGVDRQPLELDNLDRYRIGSRLLQQPALLLPDGAAGEPPWQALYQQLRAGGELPPGRAAQ 933 Query: 915 IFWETQCQEMQQLADRVI--ACRQPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSL 971 ++Q LA + + + +DLA + ++++G L Q LLRW PS Sbjct: 934 PALRELVADLQPLATFLAGNPGGKTLPPLVLDLALADNLRLSGELSQRATAALLRWSPSR 993 Query: 972 LSVAQGMQLWLEHLVYCASGGNGE--SRLFLRKDGE-----WRFPPLAAEQALHYLSQLI 1024 S + WL+HL CA + + + +D + F PL++E A L++L+ Sbjct: 994 ASAKLWLAGWLDHLALCAQAPEDQDWQTIMVGRDQQNGADIRIFRPLSSELARELLTKLL 1053 Query: 1025 EGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRG- 1083 + G PL P S ++ AQ ++ K QA+ G+ RG Sbjct: 1054 ALFVAGQQGPLPFFPRSAYEFVAKTMTAQEESQEA------KGWQAARQAFYGDGYQRGA 1107 Query: 1084 --EGDDIWYQRLW------RQLTPETMEAIVEQSQRFLLPLFR 1118 E D + + L+ E ++ PL + Sbjct: 1108 PPESADFYVETLFFGPSGRSPAATELPPGFAATARLVYEPLLQ 1150 >UniRef50_C3X2X1 Exodeoxyribonuclease V n=2 Tax=Oxalobacter formigenes RepID=C3X2X1_OXAFO Length = 1129 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 310/1179 (26%), Positives = 514/1179 (43%), Gaps = 127/1179 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML + SNR DVL + + F E ++V S + + L + ++ G+ A + Sbjct: 12 MLNLNLSNRFDVLLQTFCENLAKRP-ATVFTAEQVIVPSAAIKRKLMLAIADTAGVCAGV 70 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +F A ++W + + E+P+ S F+ +SW+++ LL + + + YL+ D Sbjct: 71 EFSFLAQWLWRQIGKFV-EVPETSPFSSSVLSWRILRLLEEPGFAAPYPRIAGYLS-RCD 128 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL----------GEAQAWQAPLWK 170 + F L+ + A LF+QY++ RP+WLA W G VE + GE QAWQA LW+ Sbjct: 129 EIMRFDLACRIASLFEQYVLSRPEWLAAWSKGETVEIVRKGHPKQAVAGEDQAWQAALWR 188 Query: 171 ALVEYTHQLGQPRWHRANLYQRFIETLESATTC-PPGLPSRVFICGISALPPVYLQALQA 229 + E T L + +RF++ LE+ LP RV + ++ P ++ L Sbjct: 189 KIAEETGTLEEEPA------ERFLKMLETGGEEMAARLPERVHLFLEPSVAPYHVGILNR 242 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 LG+ ++I L NPCR YW +I D LA L RQ+ Sbjct: 243 LGRWMDIELYVVNPCREYWFEIVDSRRLAWLSKRQK------------------------ 278 Query: 290 DGEQDVGNPLLASWGKLGRDYIY-LLSDLES-SQELDAFVD----VTPDNLLHNIQSDIL 343 D + GN LLASWGK R + LL+ LE +E D F+ P+ LL +Q IL Sbjct: 279 DLYHETGNRLLASWGKESRASLESLLARLEPVGRENDGFISCAERARPETLLSRLQDAIL 338 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 +L ++ D S+ H+ HS RE+E+LHD+LL Sbjct: 339 DLTELEAGSLSHLG------------RDGSLEIHLAHSRTREIEILHDQLLRRFASGDPP 386 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 P DI+V+ D+D +P I+AVF + +PY I+ R+ + +PV A + LL+L S Sbjct: 387 GPGDILVVSPDLDEIAPMIEAVFSHNRSAPQIPYVITGRKDSRINPVSRALLDLLALASS 446 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 RF + V+ +L +P + A F L +R W+ ++GI W ID + RE LP H+ Sbjct: 447 RFTAAGVIDVLMLPEIGATFGFGG-DLDKIRGWLGDAGICWAIDGAHKREFGLPEEDGHS 505 Query: 524 WRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 + GL R+ L YA+ + + LP ++G A +G L + + +R L+ + Sbjct: 506 FHDGLHRLFLAYALPDGRRVPFADRLPAGHAAGTQAAGLGQLWRFVEAVRQLKRDLSHPK 565 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 W +L+AF ET A + + + A + R L Sbjct: 566 TAAGWWQTWHGILDAFVTVTPETLEADREVRMRIAGLRDAMTQAGEAFETGFIIARHALE 625 Query: 643 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 + L+ AG V + +R++PF V ++G++DGVYP ++ FDL+ P+ Sbjct: 626 RALEGAGQGSVP-AGVVTFAPMDSLRNLPFGHVYVIGLDDGVYPAEVRQQEFDLIRLAPR 684 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 +GD + D+ +FL+ ++SA + LY+S GR+I+DNS + PS+L+ EL++ + + Sbjct: 685 KGDCLPHETDKNVFLDLVLSAGKSLYLSCTGRNIRDNSPKPPSILIAELLEVLEPALAEK 744 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ---PGERQSYAREWLPAAS-------- 811 D E+ + L H PF P + S+ + A + Sbjct: 745 TD-----GEARLAAREKLLVEHPLQPFSPDYFNGRADERMVSFRSDLCDALNLKKEKINI 799 Query: 812 ---------------------QAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQ 850 AG P V L+ L RF+ HP R + Sbjct: 800 KEELEYDTSEDGLDNDIGDELAAGTPFFRAPLAFPDASWRDVLLDDLIRFFCHPNRYLMR 859 Query: 851 MRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYG 910 RL ++F ++ E+ EPF ++ +R ++ +LL ++ E + R A + P G Sbjct: 860 SRLGLDFPRKEKELASDEPFTVDRTARRRLADRLLPLYLDGMAPEDIARSAAAGNEFPAG 919 Query: 911 AFGEIFWETQCQEMQQLADRVIACRQP------GQSMEIDLACNGVQITGWLPQVQPDGL 964 A G +++ E+ A + A + +++E DL +++G L V+ GL Sbjct: 920 AMGAQQRQSELMELSAFAQALSADLKTGFVAPVSRTLEFDLGGEIWRLSGSLSDVRKTGL 979 Query: 965 LRWRPSLLSVAQGMQLWLEHLVY--CASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQ 1022 +R+R + + W+EHL CA G S ++ +DG+ P +A L Sbjct: 980 IRYRYDEGAPRDYLAAWIEHLFLNACAPEGVALSSVWHFRDGKTVLEP--YGRARAVLRD 1037 Query: 1023 LIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVR 1082 L++ YR G++ PL P S ++++ A KA + A + R Sbjct: 1038 LMDIYRTGLNRPLHFFPRSAWEFVQSGGHA------------GKANGIWRPA---DGSRR 1082 Query: 1083 GEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 GE D + R + + R PL + Sbjct: 1083 GESADAFNWLAMRGVREPLDADFAALANRVFGPLLAHMK 1121 >UniRef50_A4B914 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B914_9GAMM Length = 1080 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 325/1124 (28%), Positives = 526/1124 (46%), Gaps = 97/1124 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAA 58 ML Y SNRL+ L +++ ++ +P + +LVQ GM WL M L+++ + Sbjct: 1 MLYTYPSNRLENLVLVLDTLMNNIG-SEPLTADAVLVQHPGMQHWLSMELAKQSSNQLCM 59 Query: 59 NIDFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHY 114 NI +PLP + WD+ +L +P+ S + ++ ++W+L LL Q + Y Sbjct: 60 NITYPLPVRYFWDLIRLILGPDRVPERSVYTREILAWRLYHLLQQDAITANPLMLEPNRY 119 Query: 115 LTDDS---DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKA 171 + + FQL+ + ADL++QYL+YRPDW+ W+ A+ WQA LWKA Sbjct: 120 WQEQPAYLQDSRRFQLAEQLADLYEQYLMYRPDWIEHWQE-------SPAEHWQALLWKA 172 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 LV+ H L + L LPS F+ GI++L P++L L L Sbjct: 173 LVDE------DPQHPLALMREASRRLSHPAQP---LPSHFFVFGINSLAPIWLDFLSHLA 223 Query: 232 KHIE--IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 + + IH+L+ NP +W D + K + R + + ++A + Sbjct: 224 RSTDTDIHILYLNPSAEHW----DQLHTEKQALKTRLRQQQSAQQRASWIDDDALFTDEA 279 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRA 349 D NPLL S G+ G+ ++ LSD ++ + AF + L +Q D+L L + Sbjct: 280 D------NPLLTSLGQQGQVFVRQLSD-KADYDAQAFSAPEAETQLQTLQRDLLTLHDAR 332 Query: 350 VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDII 409 ++ D ++ HS REV+ LHD LL DPTLTP+D++ Sbjct: 333 SQPHTLDH-------------DGTLMISSAHSAFREVQGLHDWLLHRFNADPTLTPKDVL 379 Query: 410 VMVADIDSYSPFIQAVFGSAPAD-----RYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 VM +++ Y+PF+QAVF + A+ LP +I+DR + + P + AF+ LLSLPD+R Sbjct: 380 VMCPNVEDYAPFVQAVFSRSFAELSEAVPPLPCSIADRNLKDADPTVAAFLELLSLPDTR 439 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA-TGQHT 523 F +++ L +P +A +F+++ + L+ + +W+ + I WG+D + + T T Sbjct: 440 FEVSRLISWLRIPAIADKFNLSADDLQRITRWLERANIHWGLDGQHKAQWTGQECTDHFT 499 Query: 524 WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 W+ GL R+LLG+A L + G A ++G L S++ QL R L + R Sbjct: 500 WKQGLDRLLLGFAYGDHDAFVHDELLLHDVEGADALILGRLTSIIEQLQNIRSDLTRART 559 Query: 584 LEEWLPVCRDMLN-AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA-VPLSLLRDEL 641 W D L A + E + I + A +PLS++R L Sbjct: 560 PSAWQSYLIDQLQIAMLSTQSAYERSNQSILKAINDFTEFANKANLEQTDLPLSVVRYVL 619 Query: 642 AQRLDQ-ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 E+ +F+ G + +C+++PMRSIPF+VV +LG+NDG +PR PLGFDLM+Q+ Sbjct: 620 ENAFASPEQTGSQFMTGQITVCSMVPMRSIPFRVVAILGLNDGDFPRNRPPLGFDLMAQQ 679 Query: 701 -PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 P+ GDRSRR DDRYLFLEAL+SA+ LY+SY G I+ N R PS++++EL Y+ + + Sbjct: 680 PPRLGDRSRRGDDRYLFLEALLSARDHLYLSYQGFDIRKNEARPPSLVLEELFSYLERGY 739 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSE 819 +A PF P+NYQ GE S+ +W+ + Sbjct: 740 GFE--------------RARHIRQLPLQPFSPKNYQ-GEYPSFNDQWIHLQRPEPEQELL 784 Query: 820 FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE-IPDTEPFILEGLSRY 878 + P P + +F++HP RAF + RL + +E + D+EPF L L RY Sbjct: 785 NLLPATDLSPSE-SIHDWVKFFSHPARAFCEQRLGLYLNNTTTENLEDSEPFTLNHLDRY 843 Query: 879 QINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG 938 Q+ + ++AL+ Q+ + L ++ +AA P ET Q+ D V A Sbjct: 844 QLQTETVSALLNQESPDVLIQQAKAASAFPLSDLALTTAETWQQQAASFTDLVRAEGADR 903 Query: 939 -QSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR 997 + + L ++G LP + LL WR + +QLWL HL+ + Sbjct: 904 IEYRPVTLQTADWSLSGVLPIIDNQQLLSWRLANAKGRDILQLWLMHLLANSQKPTHSRG 963 Query: 998 LFLRKDGEWR-FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDA 1056 L+ +D + F E A L+ L +++G+ P ++ + WL + Sbjct: 964 LYRGRDEKVEQFDLAPIEDATSLLNDLYRQWQQGLQEPSVLHSD----WLPLYLSDPTN- 1018 Query: 1057 MLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPE 1100 KF Q ++ N RG D + ++Q+ Sbjct: 1019 -----------EKKFWQIWDDNFNHRGLRYDPYIDFCFQQMPDP 1051 >UniRef50_A1KCB8 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease n=3 Tax=Betaproteobacteria RepID=A1KCB8_AZOSB Length = 1139 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 333/1186 (28%), Positives = 520/1186 (43%), Gaps = 129/1186 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M + SNR + L+A++ + ER PF ++V S+ + + +++ +++ G+ AN+ Sbjct: 1 MFSIVFSNRYECLQAMLLERLAAERP-GPFGKRHVVVPSSALRRDVELAVAEHEGVCANV 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDF----TLLRHYLT 116 +F A ++W V+ E+P S F ++W++ LL D+ L HYL Sbjct: 60 EFSYLAQWLWTQIGHVV-EVPARSPFAPALLAWRVHALLDPAAPAGDWVAAHPRLAHYLA 118 Query: 117 DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH------LVEGLGEAQAWQAPLWK 170 +D R F+L+ + A +FD YL YR WL W G E +AWQA LW+ Sbjct: 119 G-ADARMRFELAERIARVFDHYLTYRAHWLESWARGERARLGEATEAERADEAWQAALWR 177 Query: 171 ALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL 230 + + L + H A L+ R + ++ GLP V + G+ ALPP+YL L+ L Sbjct: 178 HIRD---GLALRQEHPAALFLRRVAGMDERALAAAGLPQTVHVFGLPALPPLYLAILREL 234 Query: 231 GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSD 290 + +++ L NPCR +W +I DP L+ L RQ +D Sbjct: 235 ARVVDVRLYALNPCREFWFEIVDPRRLSWLAARQ------------------------AD 270 Query: 291 GEQDVGNPLLASWGKLGRDYIYLLSDLE-SSQELDAFVDVTPDNLLHNIQSDILELENRA 349 + GN LLA+WG+ + +I LL + E E F +LL + + IL++E Sbjct: 271 MFHETGNRLLAAWGQQTQAHIGLLFEGEREVVEEALFEPHPGRHLLARLHNAILDMEELE 330 Query: 350 VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE----EDPTLTP 405 V + D SI HVCHS RE+EVLHDRLL +++ L P Sbjct: 331 PGSVALA------------ANDRSIELHVCHSRTRELEVLHDRLLDLMKAAAKRGEPLRP 378 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 +I+V+ D+D+ +P I+AVFG+APA R +P+ I+ Q +PV A LL+L R Sbjct: 379 DEIVVLTPDLDATAPLIEAVFGTAPAARRIPWRITGLGGTQENPVAAALDRLLALVAGRL 438 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE---LPATGQH 522 + V LL PV+AARF + E L + W+ +GIRWG+D ++ + A G H Sbjct: 439 PASAVFDLLQQPVVAARFGLGEGDLETIHDWMRAAGIRWGLDAEHAAAAGGVPVQACGGH 498 Query: 523 TWRFGLTRMLLGYAMESAQG--EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 T GL R+ LG+A A + + + G A +G L + L R L + Sbjct: 499 TLDAGLDRLFLGWAAGDAATAAPFAGFIGAGAAEGNAALALGRLWRYVDTLRGLRADLQR 558 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDA----VPLSL 636 + W L + E A+ + + A+ A D +PL++ Sbjct: 559 PQQAAGWRRALDSALTRLVGDEPEWAEALREVREAIVALTQAMAAAATDDGDAPAIPLAV 618 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 + L +LD G V L +R +P++VVC++G++ G++P P FDL Sbjct: 619 VHPALIAQLDD-PARGGVPGGTVTFSALSSLRGLPYRVVCVVGLDQGLFPGSDRPAEFDL 677 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 M+ +P+RGDR RR DDR LFL+ L+SA++ L++S++GRS++D S PSVLV EL D + Sbjct: 678 MAARPERGDRQRRHDDRNLFLDVLLSAREVLHLSHVGRSVRDGSALPPSVLVDELFDVLA 737 Query: 757 QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP-----GERQSYAREWL---- 807 + + + A + LT H F + + P SY E+ Sbjct: 738 AACAADPGKP----DDLAAARRRLTVEHPLQAFSAEYFLPQGERDPRLVSYHEEYAAALA 793 Query: 808 ----------------------PAASQAGKAHSEFVQPLPFTLPE--TVPLETLQRFWAH 843 + G F PLP PE V L L RF+ + Sbjct: 794 ARLGAPLRDADDDALVALAEEGDEVAVDGARVPFFDAPLPPPGPEWREVGLPQLIRFFRN 853 Query: 844 PVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ--DDAERLFRRF 901 P R + RL + ++E+ D EP + + L R + ++LL AL+ D E L Sbjct: 854 PSRYLLRDRLGLALPEGEAELEDVEPMVPDFLGRQALAERLLPALLGATVPDEEALLALA 913 Query: 902 RAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG------QSMEIDLACNGVQITGW 955 RA G+ P GA GE + ++ A V A ++ DL + Sbjct: 914 RAGGEYPAGALGEGALRRELAQLTVFAAGVRAELPARPLPPHVPTLAFDLDGEPWTLGAA 973 Query: 956 LPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGES--RLFLRKDGEWRFPPLAA 1013 ++P GLLR R + WL HLV CA+ + L +DG RF + Sbjct: 974 FGDLRPQGLLRQRYDDCRPVDYLAAWLAHLVLCAAPAPDVACETTLLARDGRCRFVAVPP 1033 Query: 1014 EQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQ 1073 A L+ + YR G+ PL P++ A+ + ++ KA ++ Sbjct: 1034 ATAHALLADCLRLYRAGLLRPLHFFPKAAWAYA------------VNGESMGKAYARWQG 1081 Query: 1074 AYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 GN E D Y+ R + + + R L PL Sbjct: 1082 ---GNRPAFAESADPAYRLALRGVADPLADDFAALASRVLGPLLDH 1124 >UniRef50_B4RTM0 Exodeoxyribonuclease V, gamma subunit n=3 Tax=Alteromonas macleodii RepID=B4RTM0_ALTMD Length = 1206 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 304/1120 (27%), Positives = 504/1120 (45%), Gaps = 143/1120 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SN+L+ L L+ ++ ++ L D F PE ILV+S GM W+ M ++ K G+A NI Sbjct: 1 MLALYPSNKLEHLSFLLTTLLRQQPL-DVFTPETILVESPGMQHWVSMQMANKQGVAMNI 59 Query: 61 DFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHYLT 116 DFPLP F+W+ VL ++PK+S + ++ ++W++ +L L++ + F + Y Sbjct: 60 DFPLPVRFMWNTARTVLGADKVPKQSPYRREVLTWRIDNVLQDNALMDSDAFEQVNKYWQ 119 Query: 117 ----DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKAL 172 + + QL++ AD+++QYL+YRPDWL +WE + + WQ+ +W+ L Sbjct: 120 SAGSEQEQGLQRLQLATALADVYEQYLLYRPDWLFKWENNER-AVFDDMEVWQSEIWRIL 178 Query: 173 VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 + H A L+Q +E LE+ P LP RV + I+ + P + AL + Sbjct: 179 AKDQ------PLHPARLHQMMLEALEAGNV-PAHLPKRVIVFAINTMAPQLIAFFDALAQ 231 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGE 292 HI+IH+ NP YWG+ K + AKLL + + E Sbjct: 232 HIDIHIFHLNPSVNYWGEAKSSSEQAKLLRLEGLKKWM---------------------E 270 Query: 293 QDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDN---------------LLHN 337 +D NPLL + GK GR+ LL++L++ E+ AF ++ LL Sbjct: 271 EDQSNPLLGNLGKQGRELFNLLTELDTF-EISAFDSPDFESAGEGEDEHGQCHSRGLLDY 329 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 I +DIL+ + + D S+T HS REV+VLHD LL L Sbjct: 330 IHNDILQAAHPQPLIHQSKN------------KDDSVTVMCTHSALREVQVLHDHLLHWL 377 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGS-------APADRYLPYAISDRRARQSHPV 450 +D T TP DI+VM I++Y+PF+ AVF A LP I+DR + P+ Sbjct: 378 SQDKTRTPSDILVMCPAIENYAPFVDAVFHRVGTKSLGATGQVRLPCTIADRSPMDAEPL 437 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 + AF++LL LPDSRF D+L L + + RF ++++ + + W+ ++ I WG++ + Sbjct: 438 IAAFMALLQLPDSRFGVSDILDYLQLDSVQKRFSVSQDDIEQMVVWLKQAHIHWGLNSAH 497 Query: 511 VR--ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLL 568 + ++W +G+ R+L+G ++ VL + G A +G L ++ Sbjct: 498 KTAVSEGVNLDDTYSWWWGIRRLLMGMLAPDSEMIVSDVLTIPDVEGQSALTLGKLIEVV 557 Query: 569 MQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQY 628 L + + L Q R E+W + +A F+P + + + LI + + A A Y Sbjct: 558 ALLGEFAQELTQPRTPEQWSKALIALRDACFMPTKDQQQSWDLIAKVAADLAARCEEANY 617 Query: 629 GDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688 + L +RD L R F+ G V +C+++PMRSIPFK VC+LG+ND +PR+ Sbjct: 618 EHELTLRQVRDLLLNRFSSPDAGNHFMTGQVTVCSMLPMRSIPFKKVCILGLNDSEFPRK 677 Query: 689 LAPLGFDLMSQKPKR-GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 +PLG DLM+ +R GDRSRR +DRYLFLEA+IS ++ LY+SY G + +NSER PS++ Sbjct: 678 SSPLGLDLMASDGRRVGDRSRRLEDRYLFLEAIISTRESLYLSYQGNDVTNNSERQPSLV 737 Query: 748 VQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWL 807 + E +D + ++ L PF + G SY WL Sbjct: 738 LAEFMDMLENNYALS--------------LEKYAVHAPLHPFSEPVF-AGALPSYETGWL 782 Query: 808 PAA-----------------------SQAGKAHSEFVQPLPFTLPETVPLE--TLQRFWA 842 A + A ++ Q + + L + R + Sbjct: 783 RLADALQHNKFGANAADTNENADVVDTSLDTATADISQSPRALATQALRLSNMQIARAFK 842 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD--------- 893 P+ F RL VN + + ++EPF L RYQ+ + ++ + Sbjct: 843 DPLEHFSIQRLGVNLSQSFTLLENSEPFETNALLRYQVLDAIFSSPERNNSSELDASELT 902 Query: 894 -AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQI 952 +E++ GD+P E + L+ + P + G I Sbjct: 903 YSEQVITFASLRGDIPNNPVAMDEVEMWKEGALALSQAM----GPHDAEPKKAQFQGKYI 958 Query: 953 TGWLPQVQP-DGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKD-------- 1003 T ++ D L+ + + + ++ L++ +S + + Sbjct: 959 TFTTSALEGSDALVELCAGKVDAHRALGFFISQLIFSSSDETTSYTHYPLEIYACSWEKG 1018 Query: 1004 ----GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLP 1039 + +F + E A+ L + + Y +AP V Sbjct: 1019 ETILKKQKFAAVERETAVQLLLFIEQLYMAIYTAPTPVHL 1058 >UniRef50_D2PR48 Exodeoxyribonuclease V, gamma subunit n=12 Tax=Actinomycetales RepID=D2PR48_9ACTO Length = 1102 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 300/1180 (25%), Positives = 492/1180 (41%), Gaps = 143/1180 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG------ 55 L ++ + R DVL + ++ L DPF E+++V + G+ +WL L+ + G Sbjct: 3 LYLHRAERTDVLADGLGELLAT-PLADPFAEELVVVPAKGIERWLSQRLAHRLGAAEGSG 61 Query: 56 --IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 + A + F P S + VL + ++ + +M+W L+ +L + L+ + Sbjct: 62 DGVCAGVRFTSPRS----LVSAVLG-LDQDDPWAADAMAWPLLAVLDESLDDAWCEPVAR 116 Query: 114 YLTDDSDKR-------KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQ 162 +L + + ++++ A LF Y V RP L W G +G + + Sbjct: 117 HLGQFDSGAEAELRRGRRYAVAARLARLFAAYAVQRPALLVDWGDGRDTDGRGVTIDDDL 176 Query: 163 AWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPV 222 AWQ LW+ LV+ P H + + Q + LP+R+ + G + LP Sbjct: 177 AWQPELWRRLVDRIDAPPPPARHLSTVAQL------RDRSESLDLPARLSLFGHTRLPLT 230 Query: 223 YLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSEN 282 ++ L AL +H ++HL +P W + Sbjct: 231 EVELLSALAEHRDVHLWLPHPSGELWDRL---------------------------TGRT 263 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDI 342 AG Q +PLLA+ G+ R+ L+ + + + ++LL +Q+D+ Sbjct: 264 AGDRAADTSHQMAEHPLLATLGRDSRELQLALAAV-PAVDRHLPSPAARESLLGWLQNDL 322 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 + A R D S+ H CH R+V+VL D LL ML+ DPT Sbjct: 323 RGNKVSAEG-------------RRPAAEDRSVQVHACHGTARQVDVLRDVLLGMLQADPT 369 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY------LPYAISDRRARQSHPVLEAFIS 456 L PRDI+VM DI++Y+P I A FG DRY L ++DR Q++P+L Sbjct: 370 LEPRDILVMCPDIETYAPLISARFGLGDLDRYGHPAHRLRVQLADRSLTQTNPLLGVASQ 429 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL L SR + VL L + + RF T++ L + WV E+G+RW D + L Sbjct: 430 LLDLAGSRATASQVLDLAETEPVRRRFRFTDDDLDTVTAWVREAGVRWAFDRGDRDRFGL 489 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGEWQSV-LPYDESSGLIAELVGHLASLLMQLNIWR 575 Q+TWRFGL R+L G M + W LP D+ EL G A + +L Sbjct: 490 ADYPQNTWRFGLDRVLAGVTMSADAHAWIGTTLPLDDVGSTRIELAGRFAEYVDRLRAAT 549 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 L +PL WL RD + A+ + + +++ + A + L Sbjct: 550 DRLDGTQPLATWLDALRDGIERLTRVGADDGWQVGQVHREFAEVAAGAGELAVT-PLRLP 608 Query: 636 LLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 +R L+ L F +G + +CT++PMRS+P +VVCLLG++DGV+PR G D Sbjct: 609 DVRSLLSAHLAGRPTRANFRSGSLTVCTMVPMRSVPHRVVCLLGLDDGVFPRFGLADGDD 668 Query: 696 LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI 755 ++++ P G+R R +DR L L+A+++A + L I+Y G + R P+V + EL+D + Sbjct: 669 VLARCPVTGERDVRSEDRQLMLDAILAATESLVITYTGANEYSGQPRPPAVPLGELLDAL 728 Query: 756 GQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-----QSYAREWLPAA 810 + +E+ V+ + H PFD +N + G ++ L AA Sbjct: 729 DR-------------TTESPVRETVVVNHPLQPFDRKNLEAGRLGTPGPFTFDPAALVAA 775 Query: 811 SQAGKAHS----EFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD 866 G + +PL E V L L F+ PV+ FF+ L V E + D Sbjct: 776 RVGGGSRPPRPAFLAEPLTLPGGEDVALADLLAFFRDPVKGFFRA-LDVTLPWEVDGVSD 834 Query: 867 TEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQ 926 P ++ L ++ + ++L ++ + G LP G G + Sbjct: 835 AMPVEIDNLEKWSVGDRMLRDMLAGIHPDAALNAEWRRGTLPPGRLGWRTATDLRDIARG 894 Query: 927 LADRVIACRQPGQS---MEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLE 983 LA RQ G + +++DL G ++TG +P V L+ S L Q + W++ Sbjct: 895 LAVAAYPHRQGGATAYDVDVDL-GGGRRLTGTVPGVHGYRLVSVSYSRLDAKQLLTSWIQ 953 Query: 984 HLVYCASGG-NGESRLFLRKDGEWR------FPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 L A+ + + L + + R F P+ A QA L+ LI Y G PL Sbjct: 954 LLALSANDEDHNWTALAIGRPRSGRTPASRLFGPVGA-QARTLLADLISVYDGGRREPLP 1012 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 + ++ AW + DD + A ++ A GE D + R+W Sbjct: 1013 LPLKTSFAWCQARRT--------DDEPMIAAGRRWRPA-----NYDGENADPAHVRVWGP 1059 Query: 1097 LTPETM---------------EAIVEQSQRFLLPLFRFNQ 1121 P + + + R P+ RF Q Sbjct: 1060 NAPLKVLLEPTRPGEQWPGEPTRLGAYAARVWEPMLRFEQ 1099 >UniRef50_Q6ANK2 Related to exodeoxyribonuclease V, gamma chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK2_DESPS Length = 1056 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 306/1134 (26%), Positives = 497/1134 (43%), Gaps = 93/1134 (8%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML ++ SN + L ++ I++RE + F E+ L+QS G+ + + L+ +F N Sbjct: 1 MLHLHISNHTEKLLEILAAIIKREGRANLFAREIFLIQSPGVERTVCQYLADEFKSWCNF 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 DF LPA + + + ++ + F Q+ W+L LL + + + + L+ Y++ + Sbjct: 61 DFLLPAGLLRKIASSLYVDL-ETDLFASQTTVWRLEALLRDI-DEDIYLPLKKYVSGEVA 118 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + K +QL+ + A LFDQY + RP LA+W G V + + WQ LW+ LVE Sbjct: 119 ELKRYQLAGQIAQLFDQYQLMRPSMLARWRLGQRVTE-EDCEIWQMHLWQRLVEEF---- 173 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 H+ + + IETLE C LP R+F+ G+ + P++L+ LQAL E+HL Sbjct: 174 PAARHQGEILENIIETLEK-EECQRRLPRRIFVFGLHTMAPLFLKFLQALSSRTEVHLFL 232 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 +PCR YWG++ DR L L ++ L + + + LL Sbjct: 233 LSPCREYWGEV---------------GRGGDRLLSLEGIRDSGVDLSSYEE--EEPQQLL 275 Query: 301 ASWGKLGRDYIYLLSDLES-SQELDAFVDVT---PDNLLHNIQSDILELENRAVAGVNIE 356 AS G+ GRD+ +L S + + + P +LLH +Q DILE AV Sbjct: 276 ASLGRQGRDFQQMLVASAGYSIDSALYQGLGAGSPPSLLHVLQGDILERGRLAVT----- 330 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 D S+ CHSP RE+ VL D +L +L +D +L RDI+VM DI Sbjct: 331 -----------AARDDSLRIVSCHSPLRELAVLKDHILDLLYKDASLQLRDIVVMAPDIQ 379 Query: 417 SYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y+P I A+F + Y+I+DR Q + V+ F+ L+L RF +VL LL Sbjct: 380 EYAPLIPALFAD------IQYSIADRATGQRNTVMAVFLDYLNLFSGRFGWSEVLDLLRS 433 Query: 477 PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 + ++F + E L++WV ESGIRWG+ + +EL LP +TW GL R+LLG+A Sbjct: 434 EHIYSQFSLGEGDFDLLQKWVTESGIRWGLSAEQRQELGLPPLELNTWLAGLQRLLLGFA 493 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 M A + VL Y + G A+ +G L L L + R L EW + + Sbjct: 494 MS-ADTMVEGVLAYSDIEGNSAQALGGLCEFLQVLQGGQELYTTPRLLHEWAELLQGDAE 552 Query: 597 AFFLPDAETE-AAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 F + + + I Y + ++ L Q Q S FL Sbjct: 553 RLFGGEENSAHQELQQILAGLGRGREYQGVLLYSQPIAFQVVMAWLQQASAQVGSSAGFL 612 Query: 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL 715 G + C+++PMRSIPF+V+CLLG+N+G +P+Q FDL++ KP+ GDRS R DDRY Sbjct: 613 RGQLTFCSMLPMRSIPFRVICLLGLNEGKFPKQDKQATFDLLASKPELGDRSPRIDDRYQ 672 Query: 716 FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEAR 775 FLEALIS + LY+SY+GRSI++N E PS + + + A Sbjct: 673 FLEALISVRDSLYLSYVGRSIKNNGEIPPS--------------VVLCELLDLLECKFAI 718 Query: 776 VKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAASQAGKAHSEFVQPL----PFTLPE 830 + PF + ++ + SY L A + +P E Sbjct: 719 KPEDIVVEQPLHPFSSKYFEGRADLFSYNENCLTLAQKIYGGGGGEERPWWSGNLGRPQE 778 Query: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 + L + F+ +P R F L++ DTE F GL RY + Q L+ L+ Sbjct: 779 NIYLADMVSFYKNPQRWFVSRSLEIRLGASSDLPDDTETFSASGLDRYLLEQGLVEDLLA 838 Query: 891 QDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSMEIDLACN 948 + ++ G P G G + ++ E+ + + + Q++ ID Sbjct: 839 GREVADIYHGLAIEGRWPQGTPGSLLFKKLLTELDEFTNSIRQIDPGPIIQTLPIDQRIG 898 Query: 949 GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRF 1008 ++ G + ++ +G+ R + ++ WL HLV + + L + KDG +F Sbjct: 899 PYRLLGKVA-LRQNGIFLHRYANRKGKDLLEAWLYHLVAGRERPDIITWL-VCKDGVLKF 956 Query: 1009 PPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKAR 1068 +E+ L +E + G++ E+ A+ C + Sbjct: 957 SEQPSEE---MLLLYLEHFAFGVNTLSSFQVEAAYAYSLHCQKKSKKTPM---------- 1003 Query: 1069 TKFLQAYEGNMMVRGEGDDIWYQRLW-RQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 + +G++ G + + +LP++ + Sbjct: 1004 QVAEETLKGSVTK---GYEPELALAISGGVEEFLAGEFERYCIELMLPIWEYAD 1054 >UniRef50_B0TXZ0 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Francisella philomiragia RepID=B0TXZ0_FRAP2 Length = 1100 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 282/1160 (24%), Positives = 514/1160 (44%), Gaps = 102/1160 (8%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L Y SN+L+ L ++ +++ E+ D F P ++V S GM WL M L+Q IA N+ Sbjct: 3 LYTYPSNKLEYLVQVLSKLLDVEKK-DFFTPTQLIVGSRGMQHWLSMQLAQYRNIAMNLK 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 + + +I D+ + + + A+ K ++W++ L + L+ Y + Sbjct: 62 YDMINGYILDICYELTAKQEYKKAYTKDILAWRIFRSLDSINN----PKLQEYYHNS--D 115 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG--LGEAQAWQAPLWKALVEYTHQL 179 K +QLS K A +F Y++YR +WL +WE G + + WQ LW+ALV+ Sbjct: 116 LKKYQLSVKIAQVFTMYIMYRAEWLQKWEQGEYINPAKPENDEDWQMQLWQALVKEVQDT 175 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 + ++ L +P ++I G++ + P L + L K+I++++L Sbjct: 176 PYK------VQAEALQKLNQQNLEKLNIPKDIYIFGVNTISPKNLSFVFELAKYIDVNIL 229 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 + NPC YW D+ A L + PL Sbjct: 230 YINPCSEYWYDLHKSKISAWLDSNDYELQ-----------------------------PL 260 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 LA+ G+ G+++ L + + QEL+ F ++L +D N+ Sbjct: 261 LANLGQQGKEFFNQLLENQEKQELEVFEKFDKNSLDFEKLAD----NNQTQLVSLQRNLL 316 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 D + D SI+ + CHSP REV++LHD+LL M++ DP++ PRDI+VM +I+ YS Sbjct: 317 ELDCQNHAKQKDLSISINSCHSPLREVQILHDKLLDMIKADPSIKPRDILVMCPNIEDYS 376 Query: 420 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 P+I +VF D+ LP +I+DR S P+ +FI LL LP+S F +L L VP + Sbjct: 377 PYIDSVFSRFSTDKKLPCSIADRTLLDSEPLAASFIELLQLPESNFEVNKILDYLSVPAI 436 Query: 480 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 539 +F IT+E L +R W+ ES I + +W +GL R++ G++ Sbjct: 437 QQKFKITDEQLETIRYWLKESCIHHSNNG-----------QTFSWSWGLKRLMFGFSYSD 485 Query: 540 AQGEWQSVLPYDESSGLIAELVGHLASL--LMQL------------------------NI 573 + LP ++ + G + L QL Sbjct: 486 SNHIVDLKLPRQSATATPSYQRGISINYQELDQLMTIPVIEGSEIAELGGLYELLELLEK 545 Query: 574 WRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP 633 + + L + R LE W +M + F + + I+ + + + Sbjct: 546 YSQELLKPRSLEAWQDYLLEMFDDVFNVTNDEQYIAKKIKDIIVKTVTTAKDVLLTEEID 605 Query: 634 LSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 L +R L +L + I+ FL G V C++ PMR++PF+V+ +LG+N+G +PRQ + + Sbjct: 606 LYTIRYCLISQLSEPIINNHFLNGKVTFCSMTPMRNVPFRVIAMLGLNNGKFPRQESAIS 665 Query: 694 FDLMSQKPK-RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FDLM++ + +GDR++RDDDRYLFLE + SA+ LY+SYIGRS++ N E+ PS++++ELI Sbjct: 666 FDLMARLGRVKGDRTKRDDDRYLFLETITSARDYLYLSYIGRSVKTNVEQQPSLILKELI 725 Query: 753 DYIGQSHY-LPGDEALNCDESEARVKAHL---TCLHTRMPFDPQNYQPGERQSYAREWLP 808 Y+ +++ D + ++ + ++ + PF + Y E +SY WL Sbjct: 726 SYLQKNYSWHTLDNVIKDNKLPKSERKNIISDIKEYPLHPFSSKCY-ADEYRSYDEAWLK 784 Query: 809 AASQAGKAHSE-FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 K + + LP+++ + L + + P++A+ L++ + E+ D+ Sbjct: 785 LLQSEPKVFYDSKLLSNSVNLPKSLSISKLVKIFEDPIKAYTNYGLELYLEDDFEELEDS 844 Query: 868 EPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL 927 EPF + L +++ Q LLN L D E + + +G LP E + + +Q+L Sbjct: 845 EPFDINSLDKHKFKQDLLNTLENNKDKELTIKTAKLSGKLPESVLTENEINKEVESIQKL 904 Query: 928 ADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVY 987 D+ + ++ ++ + + +L + S + +L+L L+ Sbjct: 905 LDKANLANYESKYFHQEILGYELEANCHIKD---NQVLLYTSSTFGIKHRFELYLTALLV 961 Query: 988 CASGGNGESRLFLRKDG------EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPES 1041 S S ++ D F ++ A L + + + +S P LV + Sbjct: 962 ALSEQQDISATYVYFDKDKNQADTNTFA-ISHLGAKQLLEKYLSNAEKIVSKPSLVHLDL 1020 Query: 1042 GGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPET 1101 A ++ + Q + T ++ + + + + ++ Y +L+ P+ Sbjct: 1021 AKAIMEYVKENQKKDASLVEKTTKQKQQAWENVIKSSETNYKALENNSYFKLFYSEHPKI 1080 Query: 1102 MEAIVEQSQRFLLPLFRFNQ 1121 + +Q + + N+ Sbjct: 1081 EDFEGQQIYQDFFEVINENK 1100 >UniRef50_C8XGX0 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGX0_NAKMY Length = 1141 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 289/1198 (24%), Positives = 468/1198 (39%), Gaps = 141/1198 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG------ 55 L V+ + R D A + E DPF +++ V + G+ +WL L+ + G Sbjct: 3 LHVHRAQRADA-LAAALGDLLAEPPADPFGVDVVAVPTRGVERWLTQRLAHRLGTRDGRS 61 Query: 56 --IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 I A + FP P + + + L + + + W L+ + + LL Sbjct: 62 DGICAAVRFPSPTTLVDE-----LAGDRADDPWTPDAAVWPLLAAIEASVHEPWCALLAE 116 Query: 114 YLTDDSDKR-------KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE----AQ 162 +L D + + ++ + A LFD Y +RP+ +A W G +G GE Sbjct: 117 HLGYRGDDAQAEHRRGRRYAVARRIAGLFDGYAEHRPEMVAAWSQGGDDDGWGEPVPADL 176 Query: 163 AWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPV 222 +WQ LW+ L + P A + R LP RV + G +ALP Sbjct: 177 SWQPRLWRRLRDRI-DAPDPVATFAQVAARLAA-----DPGAVDLPERVSLFGATALPHR 230 Query: 223 YLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSEN 282 + L AL H ++HL +P W + + R+R Sbjct: 231 QVLLLSALAHHRDVHLWLPHPSPVLWDRVGELRPPVPGRIRRRDDPTAGAAT-------- 282 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDI 342 +PLLAS G+ R+ +L+ ++ D P LL +Q D+ Sbjct: 283 --------------HPLLASMGRDVRELRTVLAGR-IDRDTWHRADDPPATLLGRLQRDL 327 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 + + K +D D S+ H H P R+V+VL D ++ +L +DPT Sbjct: 328 SDNRRPGPGMAD---------KPVVDATDDSVRVHAAHGPGRQVDVLRDVVIGLLADDPT 378 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPA------DRYLPYAISDRRARQSHPVLEAFIS 456 L P DI++M DI++++P +Q FG A + L ++DR RQ++P+L Sbjct: 379 LHPADILIMCPDIEAFAPLLQGAFGLADSVPDGHPAHQLQVRLADRALRQTNPLLATLDR 438 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL L SR + DVL + RF ++ L L WV +G RWG+D ++ R L Sbjct: 439 LLDLAGSRVTASDVLDFAAFAPVRHRFGFDDDELSTLADWVAAAGARWGLDAEHRRRYGL 498 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 GQ+TWR L R+LLG M G ++ LP DE +L G LA L+ +L Sbjct: 499 AEYGQNTWRAALDRILLGVCMSDEPGNRLETALPLDEIGSADVDLAGRLAELIDRLATVV 558 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD-AVPL 634 L+ ++ W + + A + + A+ A + L Sbjct: 559 DTLSSRHSVQRWCAELLAGVQSLTSVPARAAWQVAEFRAEVAAVQRHAAAAGSTGLELGL 618 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 + +R LA L F G + +CT+MPMRS+P +V+CLLG++DGV+PR G Sbjct: 619 ADVRALLAGALAGRPTRANFRTGTLTVCTMMPMRSVPHRVICLLGLDDGVFPRGAREDGD 678 Query: 695 DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 DL+ ++P G+R R DR L L+A+++A +KL I+Y G + ++R P+V V EL+D Sbjct: 679 DLLIREPACGERDLRSQDRQLMLDAIVAATEKLVITYSGADERTGAQRPPAVPVGELLDA 738 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-----QSYAREWLPA 809 + + + V+ + H PFD + G ++ L Sbjct: 739 LDDT---------ATTATGGAVRDLVLVRHPLQPFDARTLTAGALGRVGPFTFDPVALGG 789 Query: 810 ASQAGKAHS------EFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 A P P P V L + HP + F + RL V E + Sbjct: 790 ARALAGPRRPAGRLVPAPLPAPDRPPADVELAEVIEVLTHPAKGFLRRRLDVAVPFEQDD 849 Query: 864 IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQE 923 PD P L+ L + + ++L + + + G LP A G E ++ Sbjct: 850 PPDDLPVDLDALQEWGVGDRILRDRLAGVPEQECRQAEWRRGVLPPAALGGRALERVLRD 909 Query: 924 MQQLADRVIACR-QPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLW 981 ++ L DR R P ++E+ + +G ++ G + V GL+ S L+ +Q W Sbjct: 910 VRPLVDRTATLRAAPRHTVEVSVPLPDGRRLRGTVGGVHGIGLVTVSYSKLAPRARLQSW 969 Query: 982 LEHLVYCASGG------NGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPL 1035 L L AS R + L E+A L L+ Y EG+ APL Sbjct: 970 LAFLALTASDPALAWTAAAVGRAERGRPQCATLAALPGERARELLIDLVGLYEEGLRAPL 1029 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR 1095 + ++G + KA+ + + G GE D R+W Sbjct: 1030 PLPLKTGEKYADARRRG---------MDHDKAQDQAAATWTGGKY-PGERQDAANMRVWG 1079 Query: 1096 QLTPETM--------------------------------EAIVEQSQRFLLPLFRFNQ 1121 + P ++ + R PL + + Sbjct: 1080 RDAPFSVLTGSGTDPDTGIDTGTDPGIDADTGTDRGTATGRFALLAGRLWRPLQQHEE 1137 >UniRef50_C4GHY2 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHY2_9NEIS Length = 1184 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 320/1233 (25%), Positives = 529/1233 (42%), Gaps = 172/1233 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNRL+ + ++ I + L++PF E I++QS GM +++ L+++ GIAAN+ Sbjct: 1 MLHLYQSNRLEDIAQMLARIQQVAPLENPFAAEEIVIQSQGMRRYISQYLARETGIAANL 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLL--PQLLEREDFTLLRHYLTD- 117 F LPA W + +P+IP S F+ + M W+L+ L + + DF R L Sbjct: 61 RFSLPAGLAWRLMREAMPDIPALSPFSSEVMRWRLLALFQSDEFAQSPDFAAARQALAPY 120 Query: 118 -DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL-----GEAQAWQAPLWKA 171 + +QL+ + AD+FDQYLVYRPDW+ W G LV L + Q WQA LW+ Sbjct: 121 LHNGDYAAYQLAGQLADVFDQYLVYRPDWIETWAAGKLVPELAHSRSADTQIWQAQLWQH 180 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 L Q HR L++ +++L P LP R F+ GI+ L P+YLQ L L Sbjct: 181 L----DDGKQGAPHRVQLWRTLMQSLARPN---PRLPQRYFVFGIATLAPMYLQLLAQLA 233 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 +H ++H+ NP + YWG+I +PA + + Sbjct: 234 QHSQVHIFALNPSQAYWGNIIEPAQILNQ--------------------------TQTAD 267 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFV-DVTPDNLLHNIQSDILELENRAV 350 G+PLLAS GK GRD+ L+++E+ +LD++ + +LLH+IQ I Sbjct: 268 LSYQGHPLLASLGKQGRDFFNELAEVEAQLDLDSYTSEPQSPSLLHSIQYHIQSQTLPET 327 Query: 351 AGVNIEEFSRSDN------------------KRPLDPLDSSITFHVCH------------ 380 A N + D + L P S+ + Sbjct: 328 AHANGWLAAHQDYVHSQPRFQAAQQQLNQQYQTALAPYQGSLKTNAVSFGEAKTPNTPNT 387 Query: 381 ---------------SPQREVEVLHDRLLAM----------------------------- 396 + R++++ H + LA+ Sbjct: 388 NETPDLFSGCLTPEQNAIRQIQLTHQQNLALAQLNADPSIQIHSAHSPLRELQILKDQLL 447 Query: 397 --LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 L + P P DI ++ I+ Y+P+I+A+FG + LPY++SD + P+L+A Sbjct: 448 VLLAQHPDWQPHDIAILTPHIEPYTPYIEAIFGK-HSPYPLPYSLSDTQIAHRQPLLDAL 506 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 L+L DSRF ++ ++ALLD ++ A +T + L + + + IRWG D + Sbjct: 507 AQTLALMDSRFEADKLIALLDNELILATHRLTRDDLPLIHDTIAQLNIRWGSDAAQRSQH 566 Query: 515 ELPATGQHTWRFGLTRMLLGYAMES--AQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 Q+TW+ GL R++LG+ + A W ++ P+ + A + A+L+ L Sbjct: 567 SSQPNAQYTWQQGLERLVLGFMLPENPANPLWHNIAPHSSNPSHQA-PLSRFAALVATLI 625 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLP-DAETEAAMTLIEQQWQAIIAEGLGAQYGDA 631 + + +W +++N P + A +E E A Y Sbjct: 626 RHQNQWQTPATVPQWNERIHNLMNDLITPQSDDDHQAHQQLEAALAQWQNEAQTAHYTQT 685 Query: 632 VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 + ++ L Q L + FL G + IC+++PMRS+PFKV+CLLG+NDG YPR Sbjct: 686 INQTIAIQHLNQYLASQN-DAGFLRGGITICSMVPMRSLPFKVLCLLGLNDGDYPRNTKA 744 Query: 692 LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 +DL++Q P++GDR+RRDDDRYLFLEA++SA++ LY+SYIG+ I+ + ER PS L+ EL Sbjct: 745 APYDLIAQHPQKGDRARRDDDRYLFLEAILSAREVLYLSYIGKDIRTDEERAPSTLIGEL 804 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY--------QPGERQSYA 803 ID I +P ++ + H H PF P+ Y + S Sbjct: 805 IDTIAALTQIPANQ----------LNQHWITQHPLQPFSPKYYTGSLKNHSSAAKLISTR 854 Query: 804 REWLPAASQAGKAHSEFVQ---PLPFTLPE-TVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 +++ A + + F+Q P T + +P T ++W +P R + + L Sbjct: 855 QDYAQALNTPQPPAAPFLQNYTPAHETQEQPEIPQATFLQYWRNPNRQWLKHTLGWQAPH 914 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 + P +EPF ++ Q++ A D L A LP G F + + Sbjct: 915 TQAAHPSSEPFTIDNPR--QLDTAYTQARQHNQDFAELATTLTAQSQLPTGEFNTLIAQE 972 Query: 920 QCQEMQQL-ADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRW---------RP 969 Q L ++ + + R P Q+ + L + L G + + Sbjct: 973 QAIAAAGLNSELIQSPRHPDQTGSLKLPTG--TLNYTLSHNHQHGQILYAHQFLPNHNTQ 1030 Query: 970 SLLSVAQGMQLWLEHLVYCASGGN--GESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 + L + ++L L HL+Y A+ + +L PP+A E A L+Q + Y Sbjct: 1031 ATLQASDSIELLLRHLIYSAAAPQPTPQPTHYLSLHQSITLPPIAQETAQATLAQWLAAY 1090 Query: 1028 REGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDD 1087 ++G P+ P A + Y + KA+ Y + D Sbjct: 1091 QQGQQHPIPFFPRVTLAVARAYYTGKT-------PDWDKAQKAAHAVYHKGYTGFAQADY 1143 Query: 1088 IWYQRLWRQLTPETME--AIVEQSQRFLLPLFR 1118 + ++ + + ++ PL Sbjct: 1144 PETKLIYGRDDDTPINSPTFRHLTENLFAPLAD 1176 >UniRef50_C0ZQ87 Exodeoxyribonuclease V gamma chain n=6 Tax=Corynebacterineae RepID=C0ZQ87_RHOE4 Length = 1093 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 276/1167 (23%), Positives = 465/1167 (39%), Gaps = 120/1167 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG----- 55 ML++Y + R D L + + ++ L DPF E + V + G+ +WL LS + G Sbjct: 1 MLKLYRAERSDTLVSALATLLRT-PLSDPFARETVAVPAKGVERWLNQRLSSQLGTSGPS 59 Query: 56 ----IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL 111 I+ANI FP PA + + V + ++ + W ++ ++ + L +L Sbjct: 60 AVDGISANIAFPSPARLVAESVAAVSGITADDDPWSPTRLVWTVLDVIDESLGEPWCGVL 119 Query: 112 RHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQAWQAP 167 +L + + F ++ +LF Y RP L W G L +G L E WQA Sbjct: 120 AKHLEGHREG-RRFASATHVTELFRSYAAQRPQMLIDWAAGRLTDGHGLALSEDFEWQAR 178 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW + + G A + L LP R+ + G + LP L Sbjct: 179 LWCIVADKIDVPG-----PAERLGQVSRALVE-DPALVDLPERLSVFGPTRLPVDQRMIL 232 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 AL + ++H+ +P W +++ R SE+ + Sbjct: 233 SALSANRDVHIWLPHPSPALW-----TKMSSRIPPR----------------SESTIRRS 271 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELEN 347 NPLL+S + R+ L + + P +LL +++D++ Sbjct: 272 EDGSALISANPLLSSLARDVRELQISLGA-AEFESVHLPEPAGPKSLLATVKADVIADRA 330 Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 +VA D ++ H CH P R+VEVL + LL + E+DPTL PRD Sbjct: 331 PSVAAEP----------------DGTVQVHACHGPARQVEVLRECLLRLFEDDPTLQPRD 374 Query: 408 IIVMVADIDSYSPFIQAVFGSA---PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 ++VM D+++Y+P ++A FG L ++DR RQ++PVL SLL L D R Sbjct: 375 VLVMCPDVETYAPLVRAAFGQGVHGHPGHLLRVRLADRGLRQTNPVLAVLGSLLELADGR 434 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 + +VL L + RF E+ L LR+W E+G RWGI L A Q+T+ Sbjct: 435 ATASEVLDLAAADPVRTRFSWGEDELERLREWTTEAGARWGIGSRQRATFGLDAFPQNTF 494 Query: 525 RFGLTRMLLGYAMESAQGEWQSV-LPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 + R+LLG + + ++ W + LP D+ G +L G A + +L + R LA Sbjct: 495 NTAMDRILLGVSADESENAWLDLALPLDDVDGTDIDLTGRFAEFVDRLAVSLRDLAGPHS 554 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQ 643 EWL V L+ ++ A + + L+ +R L++ Sbjct: 555 PAEWLRVLMRALDLLTDTAPADSWQSAGAHRELVA----AVEFGGETMLRLADVRAMLSR 610 Query: 644 RLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR 703 L F G + +CT++PMRS+P +VV L+G++D V+PR G D++S+ P Sbjct: 611 SLAGRPTRANFRTGELTVCTMVPMRSVPHRVVVLIGLDDEVFPRTGGVDGDDILSRHPVV 670 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 763 G+R R +DR L L+A++SA + L + Y G R P++ + L+D + + Sbjct: 671 GERDLRSEDRQLLLDAVMSAGEHLILLYTGADPVTGVVRPPAIPLSGLLDVLSATV---- 726 Query: 764 DEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQP 823 + H FD +N+ P + S+ L A A E Sbjct: 727 ---------GPEAINGVLTRHPLQSFDNRNFSPDQPFSFDTAALAGARAAAGTPIELPTV 777 Query: 824 LPFTL----PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQ 879 L L P+ V L L F HP R F + RL V D +I D+ L+ LS + Sbjct: 778 LSAELLEVHPKEVNLADLVNFLVHPARGFLRQRLGVRVPELDDDIADSLATELDPLSTWA 837 Query: 880 INQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQP-G 938 + ++L + + + G LP G + QLA + + Sbjct: 838 LGDRMLLSRLAGRSSADFRAAEWRRGTLPPYNLGASVLGNVEWVVDQLAGLALPHLEGDS 897 Query: 939 QSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR 997 +++++D+ +G ++TG + V + ++R S L+ M W+ L A G G Sbjct: 898 EAVDVDIDLGDGHRLTGTVTGVHGNSVVRASYSSLAPKHRMTAWINLLALKAHGRPGALD 957 Query: 998 LFLRKDGEWRFPPL-----AAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDA 1052 G + A A L QL++ G+ PL + + + + + Sbjct: 958 AVSIGRGRGKIAAARSVLDAPGNAAEILQQLVDLRERGLQRPLPMWAATSAEYARRRFGG 1017 Query: 1053 QNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ--------LTPETMEA 1104 ++ A + G GE D ++ + P + + Sbjct: 1018 ---------ESVDDATNGADTQWTGQY---GEMIDPSNAYVFGEARTLAELAADPPSDDE 1065 Query: 1105 ---------IVEQSQRFLLPLFRFNQS 1122 ++R PL ++ Sbjct: 1066 FVWAEEPTRFGVLARRLWDPLLTNERA 1092 >UniRef50_B5JHV1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHV1_9BACT Length = 1133 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 263/1129 (23%), Positives = 463/1129 (41%), Gaps = 63/1129 (5%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L ++ SNR++ L A + I + L P E ++ + G+A+WLQ +++ G++ D Sbjct: 35 LYLHTSNRVENLAARLVEICQAVPLSRPLSQETVMTLNPGIARWLQFEIAKATGVSFGWD 94 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 FPLP + P F + WKL+ +L L ++ F +R Y ++ Sbjct: 95 FPLPGKLFARVLRGFEPGFDTNGVFPEDLARWKLVEILSTLEDQPRFAQVRAYCQT-AEG 153 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQ 181 +++ L+D+YLVYRPD + QWE WQA +W+ LV + + Sbjct: 154 SHRLAFANRLTRLYDEYLVYRPDIVTQWEDDPGSSNFD----WQAEIWRRLVRLVYPKNR 209 Query: 182 PRWHRANLYQRFIE-TLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 H A ++Q + P P R+ + G+S+L P+YL L L ++ +H+ Sbjct: 210 KPRHIARVWQDLSRGQILELGLQPQAWPERLLVFGVSSLAPLYLDLLDQLARYRPVHIFL 269 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 P YW D+K + K+ + + D + GN LL Sbjct: 270 LQPSDMYWADLKTTKQIQKIAMKAAGETGNR-------------ITSPEDWLYETGNALL 316 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL-LHNIQSDILELENRAVAGVNIEEFS 359 S GK + ++ LL D Q+ AF ++ L +QSD+ +E+R + Sbjct: 317 PSLGKQSQMFLDLLIDKNPQQDDTAFEPPFDESSQLACLQSDLFTIEDRDL--------- 367 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 + D ++ H C +REVE + D ++ L+E+P L +I+VM DI +Y Sbjct: 368 -AKGGDAFSAYDGTLQVHSCSGRRREVETVWDLIVRRLDENPELKASEILVMAPDIQAYR 426 Query: 420 PFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 I+AVF S +P++++D A V ++L R S +VL LL+ P+ Sbjct: 427 SHIEAVFRSKRGTHLEIPFSVADNSAGNRPGVFSGIFAILQSASGRASSAEVLELLECPL 486 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 L + +++ L + W+ E GI WG D D+ + E AT ++TW +R+ G A Sbjct: 487 LREVYSFSDQDLERIEFWIRELGITWGWDSDHRDQRESFATDRNTWSELRSRLSAGIAFS 546 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 S + L Y E G ++E G L L L R Q L W ML Sbjct: 547 SEVETPKGFLAYSEIEGELSETAGRLLECLDLLGSLRHNFRQTHSLAVWQDRLLAMLATL 606 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP 658 + + + S L+++L+ +L+G Sbjct: 607 KSQRDDWQRDYVQASDMIHETLPALDDVFATG----SEAYRALSEKLESSASGGGYLSGG 662 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLE 718 V C+L PMR+IP VC++GMN +PR+ L FDLM+++ + GDR+ RD+DR FLE Sbjct: 663 VTFCSLKPMRAIPADTVCIMGMNRLDFPRRSNRLSFDLMAKESRIGDRNTRDEDRQFFLE 722 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 L+S + +I+Y G S ++ PS +++EL+ Y+ + L + Sbjct: 723 TLLSVRSHFFITYQGTSSNSDTVNEPSAVLEELLSYLETAMPLEDFK------------- 769 Query: 779 HLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE-------T 831 + R FDP +Q +Y + ++ + + + L + Sbjct: 770 RILTQQKRQSFDPVYFQNDRNGTYDPDRAALRNRFNGLQTSEAKAVSTELEQTQGEEISE 829 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ 891 + L+ L RF++ P +AF +V +E+ + +++ + GL R+QI + + Sbjct: 830 IELDALIRFFSDPAKAFASNVSKVKLVSEEDALEESDALLSGGLDRFQIRNEFAERIARG 889 Query: 892 DDAERL-FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGV 950 + E L + LP G + ++ + QLA+ + + +DL G+ Sbjct: 890 EPLEELSIKALSQRKLLPAGLLETPTFASEYERAAQLAESIGNVETSTHYVSVDL--EGI 947 Query: 951 QITG-WLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN--GESRLFLRKDGEWR 1007 + G +++ + L + + W+ HL + + GE+ LF + Sbjct: 948 TLLGESTTRLEDGRQVLIHAGELKPKRVVDAWIRHLFAASLDPHFSGETYLFSLHEKGSP 1007 Query: 1008 FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYD-AQNDAMLDDDSTLQK 1066 E L+ L + + G +PL P + + L++ Sbjct: 1008 IRLGQVENPRKLLADLAQAFASGQRSPLPFFPVLSYNAFRAWNSCSSESEDERIGEALER 1067 Query: 1067 ARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLP 1115 AR + + R + + + EA V+ + F P Sbjct: 1068 ARKDLRASQVDSDYPRSYTWSAYDRICFGDQFEP-DEAFVKLAVAFWSP 1115 >UniRef50_D1N1Q2 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q2_9BACT Length = 1095 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 325/1160 (28%), Positives = 511/1160 (44%), Gaps = 121/1160 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 +Y SN+L+ L A+ ++ DPF PE ++VQ+ GMA WL+ +++ I AN D Sbjct: 3 FNLYSSNKLEDLAAIFRRMIFDRPGPDPFVPETVVVQTQGMATWLEQEMARDGSIMANFD 62 Query: 62 FPLPASFIWDMFVRVLPEIPKESA------FNKQSMSWKLMTLLPQLLEREDFTLLRHYL 115 P SFI ++LP E+ F+ + +W++ LL + R + L YL Sbjct: 63 MPFLQSFILKTMRQLLPREELEAFNRECRIFSPEVAAWRIFRLLGESAGR--WPELDRYL 120 Query: 116 TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEY 175 T RK QL+ + ADLFDQY VYR D L W G WQ L++ + + Sbjct: 121 TGSEPVRKRRQLAGRIADLFDQYQVYRGDLLEAWRRGEE----PGRYVWQQQLYREIAKG 176 Query: 176 THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 +++F E + +P R+ + G+ +PP+YL L+ L E Sbjct: 177 FTGPY-------GWFRKFFERVPERDLW-SRVPVRISVFGVGTMPPLYLNFLRHLSAITE 228 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 ++L + NPCR +W D + + +L A + DV Sbjct: 229 VNLFYLNPCREFW-DTYEKRFRDRL----------------------ADKNSGVFENTDV 265 Query: 296 GNPLLASWGKLGRDYIYL---LSDLESSQELDAFVDVTPD----------NLLHNIQSDI 342 NPLL S G GR + L +L + + F P+ +L IQ DI Sbjct: 266 ENPLLTSLGAQGRSFFAQTLELPELARVRSAELFRSFVPEKSESLAYPGATMLQTIQEDI 325 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 L + R G ++E ++ D SI H CH+ +RE+EVL D L+ + +E Sbjct: 326 LRMRRRGPDGDDVEVGR---TRKIDYRRDRSIRVHSCHTIRRELEVLKDELIRLFDESNG 382 Query: 403 -LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 + PRD+IVM DI++Y P+I+AVF + Y ISDR RQ + E F+ LL Sbjct: 383 AVQPRDVIVMAPDINAYEPYIRAVFNDETFEGR--YGISDRSLRQESLIAETFLQLLRQA 440 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 RF + ++L+LLD P L +F I + + LR+ V +S IRWG D R G+ Sbjct: 441 SGRFEASEILSLLDTPALRQKFRIADAEMETLRELVGQSAIRWGYDAAARRRFCDFEFGE 500 Query: 522 HTWRFGLTRMLLGYAM--ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 +WR G R+LLG+AM Q LP + G AEL+G S + L Sbjct: 501 FSWRCGFDRLLLGFAMTAPEDQLVNGEYLPCGNAEGSDAELLGRFVSFVSSLAELGERTG 560 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 E W + + ++ FF PD E+ +T + A A + +PL + D Sbjct: 561 NAHSAEAWAQLFHNAVDTFFRPDKESLPEITALRGTIDAFAAAARDGNCDEPLPLEAVTD 620 Query: 640 ELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 +L+ + + FL G + C+++P+RSIP + V LLG+N+G +PR+ LGF++MS Sbjct: 621 QLSDSFSLVQNNMPFLRGGITFCSMVPLRSIPMQAVALLGLNEGEFPRRDIRLGFNIMSD 680 Query: 700 KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 + + GDRSR+ +DRYLFLEAL++A++ L + Y G ER P+V + +LID + S Sbjct: 681 R-RLGDRSRQMEDRYLFLEALLAARRTLMLFYHGSDPLTLEERPPAVPLADLIDVLKASF 739 Query: 760 YLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP---GERQSYAREWLPAASQAGKA 816 + H+ F+ + + P E + Y+ E+ AA Sbjct: 740 -----------------RDFEVIRHSLQSFNFRYFDPANGAELRCYSPEYFRAARSLHGY 782 Query: 817 HSEFVQPL--------PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTE 868 + +P P LP + L L+R + + F + R+ ++FRT+ D E Sbjct: 783 LAGGAEPESRLPFTLRPEPLPPVLELAELERAFLNHPEYFLRNRVGLSFRTDRCTPEDKE 842 Query: 869 PFILEGLSRYQINQQLLNALV---EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 PF L+GL YQ+ +LL+ + E E +R A G LP G+ G +ET +++ Sbjct: 843 PFTLDGLGSYQVRDRLLDWRLSSDEGPSGELAYRLMLAGGQLPLGSAGRNEFETARRQVA 902 Query: 926 QLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDG--LLRWRPSLLSVA---QGMQL 980 L A + + NG+ +TG + + PDG L S S + Sbjct: 903 ALTPEQYALLTERHAEPFAVETNGITVTGSM-FLSPDGTTQLFVHGSGSSPKHLLRLRLR 961 Query: 981 WLEHLVYCASGGNGESRLFLRKD--GEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVL 1038 L V A S F KD P + A L +L+E +R+G+S PL + Sbjct: 962 HLLLTVRNAGNIPARSLGFFIKDSVEVVELPEFEPDVAEAELGRLLELFRDGLSRPLPLA 1021 Query: 1039 PESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLT 1098 A+ + A+++ + R L ++ + + R +R Sbjct: 1022 -----AYFSSACSAKDEP--------EAKRRAALAKFDPGPFDFPLDNLEGFHRCFR-PE 1067 Query: 1099 PETMEAIVEQ---SQRFLLP 1115 EA +E + P Sbjct: 1068 DFNDEAFLELVFRCADLIYP 1087 >UniRef50_A6DNF3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF3_9BACT Length = 1099 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 300/1150 (26%), Positives = 541/1150 (47%), Gaps = 114/1150 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERER------LDDPFEPEMILVQSTGMAQWLQMTLSQKFG 55 +R+ SN+L+VL + + ++ E+ L P +++++QS GMA+W+ M ++ G Sbjct: 1 MRISASNQLEVLVSQLADSLQNEKCRPEELLGRP--NDLVIIQSRGMAKWIDMQIADHNG 58 Query: 56 IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL 115 IA I++P +FI + V+ PKE ++++S++W++ LLP++ FT++ Y+ Sbjct: 59 IATRIEYPFIRTFISSILVKC-SYSPKEDIWDRESLAWRIFKLLPEI--ESKFTIIHDYV 115 Query: 116 TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE-------AQAWQAPL 168 +++ + FQL+ + A L D+Y+VYR DWL W G + +AWQ L Sbjct: 116 K--TNQLRRFQLAEQLASLIDEYMVYRHDWLQSWIQGKAFTQFNQGLEKELKHEAWQIAL 173 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 W+ L E Q A L + + LP R+ I GI+ +PPV++ + Sbjct: 174 WQKLCESAQNSFQ-----AALQNFLLA--DDIQPEVLELPPRIAIFGITNMPPVFVNFFE 226 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 L + ++ L NPC+ YWGDI+ + A Q + R R EN Sbjct: 227 KLSQLTQVTLYHFNPCQEYWGDIRMERFSA--FPLQGKDDLGLRGPIFSRTFENEIPDLP 284 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENR 348 + +G LGRD++ LL + S L+ + LLH IQ+ ILE++ Sbjct: 285 HSLLKSLG--------LLGRDFLNLLIENTSFDTLEHYAPSESSQLLHRIQNGILEMQED 336 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 + D S+ CHSP+RE+E LHD L+ L ++P L P+DI Sbjct: 337 FEDDLV---------------TDDSVKISSCHSPRRELEALHDYLVGSLADNPDLRPQDI 381 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 IVM +I Y+P I+ +F + P + L ++I+D+ R P++ +++ + L SR S Sbjct: 382 IVMAPNIHDYAPHIRNIFSN-PDNMPLDFSITDQELRGR-PLVNSYLKIFELAKSRLSSN 439 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 D+L + + P +R+ + + + +R W+ ++ IRWG D + ELP Q++W+FG Sbjct: 440 DLLEIFENPDFLSRYKLKVDDVHTIRDWIEQARIRWGKDAQQRADWELPEFEQNSWKFGF 499 Query: 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL-AQERPLEEW 587 R+L GYA + + S+L G ++G + + QL + +E+ L+ W Sbjct: 500 DRLLAGYAFDD-PELYDSILSCPI--GGDGAILGKIKTAADQLFSIYEIITQEEKSLQNW 556 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 +L + F +A+ + +I Q Q + Q + + + L L++ Sbjct: 557 CEYFSFVLKSNFEENADNQNEYNIILTQLQKMSERADLLQMNEVIAAEIAIKSLNSALEE 616 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + S F++ + C+L+PMRSIP KV+C+LG+N+G PR GFDLM++ ++GDR+ Sbjct: 617 QSSSHGFISRGITFCSLLPMRSIPVKVICMLGLNEGQLPRTNHRSGFDLMNKNWRQGDRT 676 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 DDRYLFLE+L+SA++KLY+SY+G+S +DN E PSV++ E ++YI + Sbjct: 677 MSLDDRYLFLESLVSAREKLYLSYVGQSERDNEEIPPSVILAEFMEYIKKI--------- 727 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQPG--ERQSYAREWLPAASQAGKAHSEFVQ--- 822 H F+P+ +Q + S ++ AA K+ + Sbjct: 728 --------APDFQITQHALNAFNPRYFQDEDNDLASLSQLHFRAAQSLLKSREPEREVPA 779 Query: 823 ---PLPFTLPETV---------PLETLQRFWAHPVRAFFQMRLQVNF-RTEDSEIPDTEP 869 LPE + LE L +F+A+ + F + +L + + + SE+P+TE Sbjct: 780 LFCEQELDLPEEIKSQDGFIDLDLEDLAKFFANSAKTFLRCQLGTSLWKDQVSELPETEA 839 Query: 870 FI-LEGLSRYQINQQLLNALVEQD---DAERLFRRFR----AAGDLPYGAFGEIFWETQC 921 F + L +++I L+ AL+ +D D E + + A G LPYG G +E Sbjct: 840 FAQVNALEQFKIKSTLIEALIHKDPDLDEESFKIQMQELVLADGSLPYGLKGIECFEQIY 899 Query: 922 QEMQQLADRVIACRQPGQSMEIDLAC-----NGVQITGWLPQVQPDGLLRWRPSLLSVAQ 976 + +++A++++ + + +++ +++ L + LL + P Sbjct: 900 GDSEKVAEQILLHKGEHKEEQLNFTLTFELSEKIRLNCSLSGIYQQNLLTYHPGKDKFKH 959 Query: 977 GMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLL 1036 ++ +++L AS + ++ +D ++ + + A L Q++E Y G+ PL Sbjct: 960 LIKHCIKYLAL-ASVEPRKKLHYINQDKAYQIHEI--KDARQSLEQILELYLSGLKKPLA 1016 Query: 1037 VLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 LP + + + + + + A K+ AY+ + D +Q + + Sbjct: 1017 FLPNCFQKYYEQRKLKKP---KEHEVAMGLAEQKW--AYDSYNNAFADSVDNSFQVCFGK 1071 Query: 1097 LTPETMEAIV 1106 P + Sbjct: 1072 DFPYEDALLC 1081 >UniRef50_Q14GK3 Exodeoxyribonuclease V gamma chain n=16 Tax=Francisella RepID=Q14GK3_FRAT1 Length = 1079 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 281/1148 (24%), Positives = 513/1148 (44%), Gaps = 124/1148 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L Y SN+L+ L ++ +++ E+ D F P ++V S GM WL M L++ IA N+ Sbjct: 3 LYTYPSNKLEYLVQVLSKLLDVEKK-DLFTPTQLIVGSRGMQHWLNMQLAEYRNIAMNLK 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLERE--------------- 106 + + +I D+ + + + A+ K ++W++ LL + + Sbjct: 62 YDMINGYILDICYELTAKQEYKKAYTKDILAWRVFRLLSSQNQEKNTHSHAGGNLIADGL 121 Query: 107 ---------------DFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWET 151 + L+ Y D K +QLS K A+ F +Y+ YR +WL +WE Sbjct: 122 SSKDTSLCGYDNRDGWSSKLKEYYQDS--DLKKYQLSVKIAETFSKYISYRSEWLQKWEK 179 Query: 152 GHLVEG--LGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPS 209 + L + WQ +W+ LV+ + + ++ L+ + S Sbjct: 180 DEYINPSKLENDEDWQMLIWQNLVKDIAETPYK------VQLEALQKLDKQNLEKLNISS 233 Query: 210 RVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSF 269 ++I G++ + P L+ + L K+I +H+L+ NPC YW D+ A L Sbjct: 234 DIYIFGVNTISPKNLKFIFELAKYINVHILYINPCSEYWYDLHKSKISAWL--------- 284 Query: 270 EDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV 329 D + PLLA+ G+ G+++ L + E QEL+ F Sbjct: 285 --------------------DSDDYEIQPLLANLGQQGKEFFNQLLENEQQQELEVFEKF 324 Query: 330 TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVL 389 ++L +D N+ D + D SI+ + CHSP REV++L Sbjct: 325 DKESLAFEKLAD----NNQTQLVSLQRNLLELDCQNHTKQKDLSISINSCHSPLREVQIL 380 Query: 390 HDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHP 449 HD+LL M++ DP + PRDI+VM +I+ YSP+I +VF P D+ LP +I+DR S P Sbjct: 381 HDKLLDMIKADPNIKPRDILVMCPNIEDYSPYIDSVFSRYPTDKKLPCSIADRTLLDSEP 440 Query: 450 VLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDD 509 + +FI LL LP+S F +L L VP + +F IT+E L +R W+ ES I + Sbjct: 441 LAASFIELLQLPESNFEVNKILDYLAVPAIQQKFKITDEQLEAIRYWLKESCIHHSNN-- 498 Query: 510 NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVL-PYDESSGLIAELVGHLASLL 568 +W +GL R++LG++ + L G +G L LL Sbjct: 499 ---------DQTFSWSWGLRRLMLGFSYSDSNYIIDDKLMTVPVIEGSEIAELGGLYELL 549 Query: 569 MQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQY 628 L + + L + R L W +M + F + + I+ + Sbjct: 550 ELLERYSQNLLKPRSLANWQVYLLEMFDDVFDVTNDEQYIAKKIKDIIAKTVTTAKNILL 609 Query: 629 GDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688 + L +R L +L + I+ FL G V C++ PMRS+PF+V+ +LG+N+G +PRQ Sbjct: 610 DQEIDLYTIRYCLISQLSEPIINNHFLNGKVTFCSMTPMRSVPFRVIAMLGLNNGKFPRQ 669 Query: 689 LAPLGFDLMSQKPK-RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 + + FDL+++ + +GDR++RDDDRYLFLEA++SA+ LYISYIGRS++ N E+ PS++ Sbjct: 670 ESAISFDLIARLGRKKGDRTKRDDDRYLFLEAILSARDYLYISYIGRSVKTNVEQQPSLI 729 Query: 748 VQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWL 807 ++EL Y+ ++ ++ + F + Y +S+ + WL Sbjct: 730 LKELTSYLNLNYDWGKED---------------IKEYPLHAFSSKCYS-DSYRSFDKAWL 773 Query: 808 PAASQAGKAHSE-FVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD 866 + + LP+ + + L + + P++A+ L++ + E+ D Sbjct: 774 KLLQSEPRGFYDSASLSNCANLPKNLSISKLVKVFDDPIKAYANYALELYLEDDFEELED 833 Query: 867 TEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQ 926 +EPF + L ++++ Q LL ++ D + + + +G LP +I + + + +Q+ Sbjct: 834 SEPFDINSLDKHKLKQALLKTFEDEKDKDLTIKTAKLSGKLPESVLTDIEIKEEVENIQK 893 Query: 927 LADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV 986 L D++ + ++ ++ ++ + ++ PS L++ + +L+L L+ Sbjct: 894 LLDKMSLASYESKYFHQEILGYELEANCYIK---NNQIMLSTPSSLNIGKKFELYLIALL 950 Query: 987 YCASGGNGESRLFLRKDG----EWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESG 1042 S S ++ + E+R + A L I + + P L + Sbjct: 951 VAYSEQRDISAVYYGIEKNQVEEFRVENIEYTTAKGILEHYINQAEQIVVKPQL----AH 1006 Query: 1043 GAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRL---WRQLTP 1099 + + D++N+ D Q+A K +++ + N D+ +++ + + Sbjct: 1007 LSLAEAICDSKNNT----DKKKQQAWQKVIKSSQHNFKTL--EDNSYFKLFYNKFPTVDD 1060 Query: 1100 ETMEAIVE 1107 E I + Sbjct: 1061 FEGEKIYK 1068 >UniRef50_A1V2S0 Exodeoxyribonuclease V, gamma subunit n=90 Tax=cellular organisms RepID=A1V2S0_BURMS Length = 1354 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 315/1176 (26%), Positives = 502/1176 (42%), Gaps = 124/1176 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIV-ERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML +++SNR + L + + P+ + ++V S + + L++ L+++ G+ AN Sbjct: 241 MLHLFYSNRHETLADALLDDLAFASDGAGPWAAQQVIVPSAALRRRLELDLAKRHGVCAN 300 Query: 60 IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLERED-FTLLRHYLTDD 118 + F A ++W VL +P S F + W+ LL + Sbjct: 301 VRFSYLAQWLWAQIGEVL-TVPAHSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAA 359 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLG-----------EAQAWQAP 167 +D +L+ + A +FD YL YRP+WLAQW+ G + L + +AWQA Sbjct: 360 ADAPMRHELAHRIATVFDHYLTYRPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAA 419 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW+AL+ G P HR R + + P V + + +PP+++ L Sbjct: 420 LWRALLAELSDSGMPPAHRFLREARAFD-PDVIARARAKWPDAVSVFALPTMPPLHIALL 478 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 + L + I++ + NPCR +W DI A L R Sbjct: 479 RELSRWIDVRIYALNPCREFWFDIVTAARAESLDAADRL--------------------- 517 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDLES---SQELDAFVDVTPDNLLHNIQSDILE 344 Q+VG+PLLA WG+ + +++L +L + + + D L +Q+ IL+ Sbjct: 518 ---DYQEVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYADNPAPTWLARVQNAILD 574 Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 L+ A G P + + HVCHS R++EVLHDRLLA + DP+L Sbjct: 575 LQPEAALGE--------------PPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLA 620 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 P D++V + D+ + P I AVFG+ +PY I+ Q++PV + L+LP+ Sbjct: 621 PSDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPE 680 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGI--DDDNVRELELPATG 520 + +++ L +AAR+ I L ++ W+ SG R G+ D +PA Sbjct: 681 RDVGAPELVEWLRADAVAARYGIDATALETVQAWLAASGARRGLAPDAAEPPNPAVPAP- 739 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +HT+ LTR+ LGYAM + LP + G AEL+G LA L+ + R +A+ Sbjct: 740 RHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTDDLDGFARRIAR 799 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 + + W V D L FF A++ + A++A G A+P +++R Sbjct: 800 DLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAGAALPAAVVRAG 859 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 LA LD G V +L +R +P+++VCL+GM+DGV P FDLM+ Sbjct: 860 LAAALDD-PARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLARADEFDLMAVF 918 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 K GDR RRDD+R LFL+ L++A+++L I+Y GRSI+DN+ P+ LV EL+D++ + Sbjct: 919 AKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDELLDHLAAASA 978 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP-GERQSYAREWLPAAS-----QAG 814 P ++ + H PF + + P G +Y A Sbjct: 979 GPDAPP----DAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLLAEGARA 1034 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 +A F PLP + V +RFW HP R+ + RL + +E+ DTEPF L+ Sbjct: 1035 QARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVDTEPFELDY 1094 Query: 875 LSRYQINQQLLNALVEQDDAERLFRRFR---AAGDLPYGAFGEIFWETQCQEMQQLADRV 931 + +++L L+E DA R A+ ++P GA G + + + QLA V Sbjct: 1095 AGSDALAERVLPLLIETADAAAFEHALRVADASPEVPGGATGAVRRDHALDALAQLAGNV 1154 Query: 932 IACRQ-PGQSMEIDLAC--------------------------NGVQITGWLPQVQPDGL 964 + +++ G L ++ G Sbjct: 1155 RRALADGATRVPFAFDVAPAWSAASDARWFGEHDAALAAAATREPLRLHGALARLTAAGQ 1214 Query: 965 LRWRPSLLSVAQGMQLWLEHLVYCASG-GNGESRLFLRKDGEWRFPPLAAEQALHYLSQL 1023 + +R + + WL HLVYCA G L+ + F P+AA L L+ L Sbjct: 1215 VIYRYARPGARDYLAAWLAHLVYCAIDPGGPRRTLWFGSGDTFEFAPVAA--PLEQLAPL 1272 Query: 1024 IEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRG 1083 +R G PL P S A + + KA ++ N V G Sbjct: 1273 AALFRAGRRMPLAFFPRSAWALVS--------------ESESKAAGVWI-----NDRVAG 1313 Query: 1084 EGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRF 1119 E DD WR P E + PL Sbjct: 1314 EADDASLALAWRGANPSLDEPFGALAHLVFDPLVEH 1349 >UniRef50_B5EPU5 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU5_ACIF5 Length = 1130 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 343/1178 (29%), Positives = 525/1178 (44%), Gaps = 121/1178 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 V H +RL+ L + + L P E E+ LVQS G+A+WLQ TL+ GI A + Sbjct: 10 FIVLHGDRLEWLSDAVLEWLRAHPL-RPLEEEIFLVQSNGIAEWLQWTLAAHEGICAAVR 68 Query: 62 FPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL---- 115 LP F+W+ + RVL + S +K ++W+LM LLP+LL DF LRH++ Sbjct: 69 VALPGRFLWESYARVLGTGIVSARSPLDKAPLTWRLMRLLPELLAHADFAPLRHFIGQSQ 128 Query: 116 TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV--------EGLGEAQAWQAP 167 D + +Q++++ ADLFDQY VYR DWLA W T + L Q WQ Sbjct: 129 RPDGALERRWQMAAQIADLFDQYQVYRGDWLADWTTDQSLLRRGDGERVTLPADQRWQPR 188 Query: 168 LWKALVEYTHQLGQPRWH-RANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQA 226 LW+AL + H G + RA ++++F+ L + LP RV I G + LP L A Sbjct: 189 LWQALRQDLHSRGLDQAPGRAQVHEQFLAALNAGRPPVTPLPRRVVIFGAATLPEQSLTA 248 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L ALG+ +++ L NPCRY+W DI R + + Sbjct: 249 LAALGRQMQVILAVPNPCRYHWADIVSG-----------RELLRRERRRQPPRNGHDLSA 297 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ---------ELDAFVDVTPDNLLHN 337 ++ GNPLLA+WG+ GRD++ LL + + +D F + D LL Sbjct: 298 TATEDLHQFGNPLLAAWGRQGRDFLDLLDQFDETAALQRQMDIPRIDLFSEDQGDTLLRQ 357 Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 +Q I +LE R + LD D S+ FH+ HS REV++LHD+LL Sbjct: 358 LQVQIRDLE-----------GIRPETCTALDDNDHSVVFHIAHSALREVQILHDQLLDRF 406 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFI 455 L PRD+IVMV +I ++P I+A F + RY+PY I D +AR P+L A Sbjct: 407 ATGK-LQPRDVIVMVPEIGGFAPLIRATFDQYDREDRRYIPYHIVDLQARDEQPLLLALD 465 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE 515 LL LP+ R ++ LL+ P L RF + E L ++ W+ +G RWG+ ++ L Sbjct: 466 WLLRLPEQRCRQSEIRDLLNCPALRRRFGLELEDLPIVQHWLAGAGWRWGLSAEHRAALG 525 Query: 516 LPAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 +P Q++ F L R+ LGYA + + Y E GL A L+G L LL +L W Sbjct: 526 MPHCGSQNSGDFALQRLCLGYASGD-DSHFSGIEAYGEVGGLDAALLGPLGQLLEKLAHW 584 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAM-TLIEQQWQAIIAEGLGAQYGDAVP 633 + L + E W R++L FF + + A+ +E+ + + A + +A+P Sbjct: 585 QHVLGESLVPEHWGEAARNLLTDFFSASDDDDEALLQNLEEALRQWQTDCAAADFNEALP 644 Query: 634 LSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 L++ R + LD + + FL G V CTL+PMR++P+ +VCLLGMN+G YPR+ Sbjct: 645 LAVFRGAWLEMLDAPDLGRSFLGGGVTFCTLLPMRAVPYPLVCLLGMNEGDYPRRSPRPD 704 Query: 694 FDLMSQKP--KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 FDLM+ + GDRSRRDDDRYL LEAL++A+++LY+S+ GR ++N ER PS+LV +L Sbjct: 705 FDLMALPGMARPGDRSRRDDDRYLMLEALLAARRELYVSWAGRDQRNNHERAPSLLVAQL 764 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQ-PGERQSYAREWLPAA 810 + I T H PF P +++AREW P+ Sbjct: 765 REAIRDGW--------------PPALEKRTFEHPLQPFSPDYLAGKPGLRTWAREWYPSP 810 Query: 811 SQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPF 870 A + P P + + L F+ P RAF++ RL+ +F ED D EPF Sbjct: 811 HSAPE---NAALPDPAEITPR-SIRELLEFFRLPARAFYRQRLRTDFNEEDPAEEDDEPF 866 Query: 871 ILEGLSRYQINQQLLNALVEQDD--AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLA 928 L+ L Y + + LL A + R R +G P ++ + Sbjct: 867 TLDSLETYHLLEDLLRAAEKNGPDRIAERVRAQRRSGRYPLAGMASRTATALLDDVTPVL 926 Query: 929 DRVI----ACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQ----- 979 Q + A + + WLP + + L ++ + Sbjct: 927 TVWREIGTEWTAAPQRRVVHRARGRILLEDWLPALYQNNAGDLAFVQLRASRLLNKDSKK 986 Query: 980 -------LWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMS 1032 + + G + + +D R P + L L++ ++EG+ Sbjct: 987 PEGDKLAALWLQQLLANAVGLRCGGIVVGRDVLVRAAPPPPGA-IAALDDLLDLWQEGLC 1045 Query: 1033 APLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGE-GDDIWYQ 1091 PL V ++ L+ A Y+GN + GE D+ Sbjct: 1046 EPLPVTLKTALVSLQGKNPA--------------------PIYDGNDRLPGEARKDLSLF 1085 Query: 1092 RLWRQLTPETMEA-------IVEQSQRFLLPLFRFNQS 1122 R + + E + P + ++ Sbjct: 1086 RDYPDFATLSSARTGPQRRGFAEYAAALYRPFAGWLET 1123 >UniRef50_C1ACJ2 Exodeoxyribonuclease V gamma subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ2_GEMAT Length = 1101 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 307/1159 (26%), Positives = 502/1159 (43%), Gaps = 125/1159 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L+V + L A ++ + L PF+ ++++VQS GM +W++ L+++ G AA++ Sbjct: 6 LQVVTGDSPHALLAELDRTLTTWPLS-PFDDDIVVVQSLGMERWVRQQLARRRGCAASLQ 64 Query: 62 FPLPASFIWDMFVRVLP--------EIPKES-AFNKQSMSWKLMTLL--PQLLEREDFTL 110 P PA+F + + + P F +++++W+L LL +L + Sbjct: 65 LPFPAAFCRKLAESLAGIGGPGNETDAPTLDKRFEEEALTWRLFALLSDEDMLADAVYAP 124 Query: 111 LRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--------LVEGLGEAQ 162 LR +L +D K + L+ + + FD+Y +YRPD L WE G Sbjct: 125 LRAFLEQ-ADPAKRYGLARRVSARFDEYRLYRPDMLLAWEAGGHASVEGPFDTAAENPHA 183 Query: 163 AWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPV 222 AWQ LW+ +++ G+ H A + IE LE A P GLP R+ + GIS LPP+ Sbjct: 184 AWQCALWQQVLQ-----GERPMHFARWFLHTIERLEQAAIRPVGLPDRLSVFGISTLPPL 238 Query: 223 YLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSEN 282 +++ L+A+ + + P Sbjct: 239 FVRLLKAVSRFAAVRFFVLVP--------------------------------------- 259 Query: 283 AGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDA-FVDVTPDNLLHNIQSD 341 + NPL A +G ++ + LL E D++LH++Q Sbjct: 260 ----ADPQLVGRSPNPLTAQFGHASQELLTLLGANEPGGSRHVQAAMPAEDSVLHHLQRA 315 Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 + + + P D S++ H+CHSP RE+EVL D+LL +P Sbjct: 316 LR-------------GSELTPTACLVSPTDRSVSVHICHSPLREMEVLRDQLLDAFAVNP 362 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEAFISLLS 459 L P D++VMV D++ Y+P + VFG A + +P+ ++DR + L+A LL Sbjct: 363 ALRPHDVLVMVPDVELYAPLAEVVFGGAMSESRPRIPFRVADRALARESAPLQALELLLQ 422 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV-RELELPA 518 L SR DVL LL VP + R +T + L WV ++GIRWG D D+ +P+ Sbjct: 423 LVSSRLGVSDVLHLLSVPSVRRRVGVTPAQVEQLTGWVQQAGIRWGWDADDRVSRFGVPS 482 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 +++WR GL R++ GYAM + +P AEL+G + L L Sbjct: 483 FVENSWRLGLDRLMAGYAMGPVDVLVEGHVPVAGDLVGDAELLGVFVRWVDDLERHLMRL 542 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAA-MTLIEQQWQAIIA----------EGLGAQ 627 + RPL W V ++ +P+ E A M I + QA+ Sbjct: 543 REARPLSTWSTVLAEVFAWAVVPEGSAEQATMAQIAEAMQALREPSGAPRQRRLREAHDV 602 Query: 628 YGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPR 687 V ++RD + LD + + FL G + IC + PMR+IP +V+ +LG++D YPR Sbjct: 603 EDPEVAFEVVRDWILAALDSDDHATGFLTGGLTICAMKPMRAIPHRVIAMLGLDDRSYPR 662 Query: 688 QLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 + FDL+ + GDR R DDR L L+ L+ A+ +L++SY+GRS +N+E PS++ Sbjct: 663 RERRPAFDLIGSARRVGDRDPRTDDRQLVLDTLLCAEDRLHLSYVGRSETNNAEIAPSIV 722 Query: 748 VQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQS--YARE 805 V EL+ Y+ + + L H PF + P + ++ + Sbjct: 723 VAELLQYLQRMVHTVDKAPHPL----------LRVEHRLQPFSTAYFVPTATDTALFSFD 772 Query: 806 WLPAASQAGKAHSEFVQPL------PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 + AAS P P + L+ L W++P + + L ++ R Sbjct: 773 DVLAASVRDVTERRKAPPFVARAVTPLHTEGVIALDDLMLAWSNPSQLHAERTLHLSLRD 832 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 + D EP +++ L R ++ Q+LLN ++ R A+G+LP G G + + Sbjct: 833 HRDALDDVEPTVVDALLRTRLQQRLLNEVLHGAGERGATARLSASGELPPGPLGAAWQQR 892 Query: 920 QCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQ 979 Q++ L RV R + + +DL +G Q+ G L + R R + L ++ Sbjct: 893 LAQQVDPLLQRVGQPRF-LEPLTVDLRGHGWQLVGRLDYQHAEEQWRVRAATLKPRDVVR 951 Query: 980 LWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLP 1039 W+ HL A G G +R+ D E RF P A+ L L++GY+ ++ P+ Sbjct: 952 GWIAHLARQAMGVGGTTRVM-ALDQELRFAP--QADAMVLLEALVQGYQRMLAEPMPYFL 1008 Query: 1040 ESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTP 1099 + A+ K A L+ AR KF G G+ DD + LWR+ P Sbjct: 1009 AAAVAYRKAIATAS-SGRGAAKPPLEAARAKFAP---GGDYGEGDLDDPYVALLWRERDP 1064 Query: 1100 E--TMEAIVEQSQRFLLPL 1116 +A V F PL Sbjct: 1065 FAHHADAFVALVDAFWEPL 1083 >UniRef50_P96921 Exodeoxyribonuclease V gamma chain n=23 Tax=Mycobacterium RepID=EX5C_MYCTU Length = 1097 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 292/1178 (24%), Positives = 485/1178 (41%), Gaps = 141/1178 (11%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLS--------QK 53 L ++ + R D+ A + + DPF E++LV + G+ +WL LS + Sbjct: 3 LHLHRAERTDL-LADGLGALLADPQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRA 61 Query: 54 FGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113 G+ A I F P S I ++ + + ++ ++++W L+ ++ L+ L Sbjct: 62 DGVCAGIAFRNPQSLIAEITGTL-----DDDPWSPEALAWPLLAVIDASLDEPWCRTLAS 116 Query: 114 YLTDDSD--------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQ 165 +L + + + + ++ + A LF Y RP LA W G + L AWQ Sbjct: 117 HLGHFATTDAEAELRRGRRYSVARRLAGLFASYARQRPGLLAAWLDG-DLGELPGDLAWQ 175 Query: 166 APLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225 PLW+ALV H + I L P LP+R+ + G + L +Q Sbjct: 176 PPLWRALVTTVGADPPHVRH-----DKTIARLRDG---PADLPARLSLFGHTRLACTDVQ 227 Query: 226 ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285 L AL H ++HL +P W R L F+ ++ Sbjct: 228 LLDALAVHHDLHLWLPHPSDELW-----------------------RALAGFQGADGLLP 264 Query: 286 LFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVT--PDNLLHNIQSDIL 343 + +PLL + G+ R+ L +++ D F+ T PD LL +Q+DI Sbjct: 265 RRQDTSRRAAQHPLLETLGRDVRELQRAL---PAARATDEFLGATTKPDTLLGWLQADIA 321 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 R R L D S+ H CH P R+++VL + LL +LE+DPTL Sbjct: 322 GNAPR-------------PAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTL 368 Query: 404 TPRDIIVMVADIDSYSPFIQAVFG------SAPADRYLPYAISDRRARQSHPVLEAFISL 457 PRDI+VM DID+Y+P I A FG L ++DR Q++P+L L Sbjct: 369 QPRDIVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAEL 428 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 L++ ++R + +L L + A+F ++ L + WV ES IRWG D + R L Sbjct: 429 LTIAETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLD 488 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSV-LPYDESSGLIAELVGHLASLLMQLNIWRR 576 +TWRFGL R+L G AM W LP D+ EL G LA + +L+ Sbjct: 489 TVVHNTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVG 548 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 GL+ RPL WL ++ + + A +++++ ++A + + L Sbjct: 549 GLSGARPLVAWLDALATGIDLLTACNDGWQRA--QVQREFADVLARAGS-RAAPLLRLPD 605 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 +R L +L F G + +CT++PMRS+P +VVCL+G++DGV+PR P G D+ Sbjct: 606 VRALLDAQLAGRPTRANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPDGDDV 665 Query: 697 MSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 ++++P G+R R +DR L L+A+ +A Q L I+Y G + R P+V + EL+D + Sbjct: 666 LAREPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALD 725 Query: 757 QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-----QSYAREWLPAAS 811 Q + A V+ + H PFD +N PG ++ L AA Sbjct: 726 Q-------------TTSAPVRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQ 772 Query: 812 QAGK----AHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 A + LP V L L F+ PV+ FF+ L + + D+ Sbjct: 773 AAAGKRCPPTAFISGRLPAPPAADVTLADLLDFFKDPVKGFFRA-LDYTLPWDVDTVEDS 831 Query: 868 EPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL 927 P ++ L+ + + +++L ++ + G LP G G + + L Sbjct: 832 IPVQVDALAEWTVGERMLRDMLRGLHPDDAAHSEWRRGTLPPGRLGVRRAKEIRNRARDL 891 Query: 928 ADRVIACRQPG---QSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEH 984 A +A R +++DL +G +++G + V + S L+ + W+ Sbjct: 892 AAAALAHRDGHGQAHDVDVDL-GDGRRLSGTVTPVFGGRTVSVTYSKLAPKHVLPAWIGL 950 Query: 985 LVYCASGGNGE-SRLFLRKDGEWRFPP----LAAEQALHYLSQLIEGYREGMSAPLLVLP 1039 + A E S L + + + + L +L+ Y G PL + Sbjct: 951 VTLAAQEPGREWSALCIGRSKTRNHIARRLFVPPPDPVAVLRELVLLYDAGRREPLPLPL 1010 Query: 1040 ESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTP 1099 ++ AW + D Q+ + ++ N G+ D + R W P Sbjct: 1011 KTSCAWAQARRDGQDPYPP------------ARECWQTNRFRPGDDDAPAHVRAWGPRAP 1058 Query: 1100 E---------------TMEAIVEQSQRFLLPLFRFNQS 1122 + + R LPL S Sbjct: 1059 FEVLLGKPRAGEEVAGEETRLGALAARLWLPLLAAEGS 1096 >UniRef50_Q8D2T9 RecC protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2T9_WIGBR Length = 1083 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 282/1125 (25%), Positives = 570/1125 (50%), Gaps = 49/1125 (4%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M+ +Y SN++D+++ ++ I++ +++P + E+I+ S+ +++WL++ ++ I AN+ Sbjct: 1 MIYIYQSNQIDLIQKILSKILKNFPINNPMKKEIIITSSSNISEWLKLNITLNINILANV 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +F SFIW + + +P ++ + +SW + Q++ + + + + + + Sbjct: 61 EFISLNSFIWKLVILTTKNVPFDNFAFRLMLSW----YIAQIIPKINKNIKIKNVYKNLN 116 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + ++F LS K ++L+++YL+++PDW+ + L ++Q +Q +W LV+ + Sbjct: 117 QFQIFYLSYKLSELYNKYLIFKPDWIDLLNFKKKSKKLEDSQYFQLIIWNLLVKKIKK-- 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 + + +++Y+ I+ +E + + R+FI GI +P +YL+ L+ L K I+IHL Sbjct: 175 EKDFCISSIYESCIQKIEKSNLIFEDIADRIFIFGIYYIPEIYLKILKTLSKKIDIHLFC 234 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 NPC YW DI + Y++ L+ EN + + + + LL Sbjct: 235 INPCCLYWFDIDNRFYISNLI-------------------ENKIKNKKNFFRKKIKISLL 275 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 + WG LG Y+ LL++L + E F DNLLH IQ+DIL + + Sbjct: 276 SFWGCLGAKYLKLLNNLNENIENKIFYKPKKDNLLHTIQNDILYNKYYNIIISKKFNKFE 335 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 N R L+ D+SIT H C + E+ L++ ++ + +++ + +DI+VM ++I+ YS Sbjct: 336 KKNLRVLNSKDNSITIHTCKNKYEEINSLYNFIVKITKDNKKICFKDILVMASNIEDYSS 395 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I ++F + + + Y ISD + + ++ A ++L LP +F E + LL+ ++ Sbjct: 396 YINSIFNN--INYKINYFISDIKIYERFNIISAIFNILKLPKFKFSIEQIFYLLEFSSIS 453 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 +F + E+ ++ L+ V G++WGI + ++ +++W + + + Y Sbjct: 454 NKFKMKEDEIKMLKYLVINLGVQWGISNKRFKKCNANFEEKYSWNNIIKKTVSEYYTRIN 513 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL 600 + + ++ + L + + +LN W L+Q L EW V + ++ FF Sbjct: 514 NKVYFKYIYSNDLDEKKINSLIKLENFISKLNYWYDYLSQPHLLYEWNDVIKKIIKNFFD 573 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN 660 PD + + L+++ W II +G+ +Y + + L + L +R +E ++ ++ Sbjct: 574 PDKKENYVLDLLKKNWNDIIFQGINTKYKKTIYIETLENILYKRFKKENFFKKNKFNSIH 633 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEAL 720 C L + IP K++CLLG+NDG YPRQ FD + + K D++ R +D Y FL L Sbjct: 634 FCNLKLSKIIPSKIICLLGINDGTYPRQDINYNFDSIYKNLKNDDKNIRQEDLYSFLIIL 693 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL 780 +S+++ LYIS+I I + ++ S+++ ELI+YI S Y+ ++ N E+ +K L Sbjct: 694 LSSKEHLYISFIKNYINEERSKYISIIINELIEYISVSFYIKNCKSYNFLENINNIKKIL 753 Query: 781 TCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 + F ++ + + + +++ F + + + F Sbjct: 754 FKKYNNFYF----FRKEKIEIFNKKYFLNNININSDKKIFSK---------ISINEFFLF 800 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR 900 +++P++ + + +L++NF ++ D E + + Y+IN L L++ L ++ Sbjct: 801 YSNPIKFWCKKKLKINFS-KEHLYKDNEFILKNKFNSYRINIILFEYLIKNK---YLNKK 856 Query: 901 FRAAGDLPY---GAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDLACNGVQITGWL 956 + Y G F EI E + ++ +L + + ++ ++ + I GWL Sbjct: 857 DLLKNTIKYFFDGVFEEIIIEKKYYQIIKLINNINKHLLMKKETKKVFFKLDRTIIFGWL 916 Query: 957 PQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQA 1016 P +Q GLLRW P LS+ G W+EHL+YC GG G+S +FL + W F + ++A Sbjct: 917 PNLQNSGLLRWNPKNLSLQDGFLFWIEHLIYCIIGGKGDS-IFLGIESYWHFKNINYKKA 975 Query: 1017 LHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYE 1076 H+ +L+ GY G+ P+ +L +SGGAW+ ++ + + ++ D+ T + AR+K + A++ Sbjct: 976 KHFFKKLLVGYELGIENPIFLLNKSGGAWINHSFNKEKNKLILDEKTKKNARSKLISAWQ 1035 Query: 1077 GNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 GN + G+ D + ++ LT + I+ +S+++ + +FN+ Sbjct: 1036 GNKFINGDSQDFYISKVIPFLTENNINKIINESKKYFIFPLKFNK 1080 >UniRef50_C7PDT3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT3_CHIPD Length = 1063 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 294/1138 (25%), Positives = 489/1138 (42%), Gaps = 105/1138 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61 L + SN L+ L + ++ FE +I+ Q+ GM WL++ L++ GIAAN Sbjct: 3 LYLRVSNSLENLSMGLAQTLKAS-NSQVFEQHLIVTQTEGMNNWLKLQLAEYLGIAANCR 61 Query: 62 FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLT--DDS 119 F P I ++ L + + ++++W L LL + + RE + + Y + Sbjct: 62 FLKPNDLIHQIY--FLMDGQYSEMLSGRNLTWLLYKLLGEDIFRETYPAVATYYHTTEPD 119 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 K L+ + ADLFDQY +YRP+ + +W E WQ LW E Sbjct: 120 SDLKRMALAERTADLFDQYQIYRPEMINEW--NAPPEDPFAKIDWQQYLW---TEAKKVS 174 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSR---VFICGISALPPVYLQALQALGKHIEI 236 G + + Q ++ L++ L R V + G+S + ++Q L L I+I Sbjct: 175 GHALPDKTIIGQHILDMLKNPDHQET-LAHRMNTVHLFGLSIITAYHVQILHELSSFIDI 233 Query: 237 HLLFTNPCRY-YWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 + NP YW D K A+ + R D Sbjct: 234 YFHIINPSPELYWFDDKSEKQQARWRLKGRPIHESDTA---------------------- 271 Query: 296 GNPLLASWGKLGRDYIYLLSDLE---SSQELDAFVDVTPDNLLHNIQSDILELENRAVAG 352 GNPLL WG++ +D L + ++ E + V+ PD LL+ +Q DI N Sbjct: 272 GNPLLMGWGRVVQDTFGLFFKYDAFINAYESEGLVEPQPDTLLNKVQHDIFLNAN----- 326 Query: 353 VNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED-PTLTPRDIIVM 411 + P D D SIT + C++ REVEVL++ L+ ++++ TL+PRDI+VM Sbjct: 327 ------EQRHPIFPEDVEDGSITINNCYTVAREVEVLYNYLVHLVDKKRETLSPRDIVVM 380 Query: 412 VADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVL 471 V DID Y+P+I+A+F +AP Y I+D S + A ++L L + F +E+VL Sbjct: 381 VRDIDVYAPYIKAIFNNAPYKFR--YTIADESYADSDNLFNALHAILRLNEDNFKAEEVL 438 Query: 472 ALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRM 531 LLD + RF I + +R V+E+ IR+GI E L +W++G+ R+ Sbjct: 439 QLLDSSYVRKRFGINN--VPLIRHVVDEANIRFGIHGAKEDETYL-----VSWKYGIKRI 491 Query: 532 LLGYAMESAQGE---WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588 + G M Q + P D G + V L +ER + W+ Sbjct: 492 MYGICMSGDQEYGKGEEGFFPLDILEGSDSLEVIRFCHFAEVLISAIEDRKKERSISGWV 551 Query: 589 PVCRDMLNAF-FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 +L+ + P+ E + + QQ L D V + Q L Sbjct: 552 EYIEGILHNMVYEPEEEIDEDYNTLMQQLSDY--NLLNEYMSDTVAFDVFSHSFLQTLTG 609 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + F+ G + C+L+PMRSIPF+VV +LG++ +PR+ P+GF+LM + +RGDR+ Sbjct: 610 TTRTGLFVNGGITFCSLIPMRSIPFRVVAMLGLDYDKFPRREQPIGFNLMEKNKQRGDRN 669 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 +D+D++LFLE ++SA+Q LYISY+G+S +DNS PS LV EL+DYI Sbjct: 670 VKDNDKHLFLETVLSARQYLYISYVGQSAKDNSRMPPSALVDELLDYIESGC-------- 721 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFT 827 E V+ L F + Q ER Y+ + + + + + Sbjct: 722 ---EDAEGVRNRLVTRQPLQGFSRKYGQGDER-LYS---YLNTAVPERIITRADKAMEQP 774 Query: 828 LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 E + L+ L RF+ +P +A++ L + + E + +TE F L+ L ++ + +LL Sbjct: 775 SIEEIDLDELVRFFKNPFKAYYNKVLGIYYNDEQVLLNETEIFHLDSLQKWSLKNELLQ- 833 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC--RQPGQSMEIDL 945 ++ + + R G LP + + E+Q + ++ AC QS++++L Sbjct: 834 -MDTNAIANMKIRLVKTGRLPLKNMAYVALQQIEAEVQPVREKFRACINGAEEQSVQVNL 892 Query: 946 ACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGE 1005 G + G + V L++ S M+ ++ +L A+G Sbjct: 893 DIEGTLLKGTINGVFDGKLVQVSWSKREDKYLMEAYIRYLAGRAAGVLDGMCFISGASKR 952 Query: 1006 --WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDST 1063 + PLA ++AL L+ L++ +REG P+ D D S Sbjct: 953 EAFEAIPLAQQEALRRLTALVKIFREGFEKITPFYPD--------FDIKPADVAGLDFSK 1004 Query: 1064 LQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ---LTPETMEAIVEQSQRFLLPLFR 1118 K K L +G+ + D + R + ++ L+PL Sbjct: 1005 FSKKVDKALD--KGDDITI----DPYISREYENGFFKDETMLDTYKVICSHLLVPLAE 1056 >UniRef50_Q89AB4 Exodeoxyribonuclease V gamma chain n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX5C_BUCBP Length = 1111 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 270/1123 (24%), Positives = 538/1123 (47%), Gaps = 25/1123 (2%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M +Y S + ++ ++ E L +P E+ +V + QW+++ +++K+ + NI Sbjct: 1 MFTLYKSLKFNLFVKSAFKVILNEPLLNPLTKEIFIVNNKETEQWIKIFIAKKYKVCTNI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 F FI ++ + P++ +S F+K S+ WK++ + P + LL ++ ++ Sbjct: 61 KFFKLKHFILNILKQNTPKLYSKSEFSKYSIMWKIINI-PDIQH-----LLTKIVSKNNT 114 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 LF+++S ++LF YL YRPD++ +WE + Q WQ +W +++YT Sbjct: 115 YSTLFKIASSISNLFQLYLKYRPDYIKKWEQKSNIPKTRLKQKWQQIIWMRIIKYTKDAN 174 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 +P H +NL I+ ++ LP R+FI I+ + P Y L+++ K+ +H + Sbjct: 175 KPILHFSNLLYDSIKKMQRNNFINTKLPVRIFIFNITPITPQYAIFLKSISKYCSVHFFY 234 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 + D + + ++ + +L S+N +++ Sbjct: 235 ATAS---YND--KQMFSTSFIKFKQTQEISNNQLLSLLHSKNKNIIYHEIENFQKNTKFQ 289 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 + W + + L L + ++ + ++LL +Q+ IL L + + + Sbjct: 290 SYWITYEYEQM-LFLSLIKDKTINLNFKIKQNSLLQYLQNKILNLH-----SIQKKNNEQ 343 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 +NK + D S++ H CH+ RE+EVLH+ LL +L ++ + +D++V+ ++D+Y P Sbjct: 344 ENNKILILKTDKSLSIHSCHTLIREIEVLHNNLLNILNDNNDILFQDVLVISKNLDTYIP 403 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA 480 +I +F SA + ++P++I+ + ++ + + L+ LP+ + LL++P L Sbjct: 404 YINQIFNSASSKNFIPFSINYK-NIKNIEFYKTILELIDLPNIELNINKITNLLNIPTLL 462 Query: 481 ARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 + I E+ + L Q +N++ I+W D+ + L W GL R+ LG + + Sbjct: 463 KKVQINEQEIPILLQIINQTEIQWENDNILSNDW-LSNDITKCWEHGLQRIFLGQIINNI 521 Query: 541 Q-GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 599 W++++PY+E S L + L SL+ LN W++ L++ + L W + +LN FF Sbjct: 522 DYKFWENIVPYNEFSTLYYNIFNKLISLISLLNKWKKILSKPKFLSHWDITFKKLLNDFF 581 Query: 600 LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPV 659 + + LI ++W II G+ +Y + ++LL++EL + S +G + Sbjct: 582 TDHEQKQPEAKLIIKKWTEIIHSGMQEKYTKKISITLLKNELCNSVSYISQSNYLFSGKI 641 Query: 660 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG-FDLMSQKPKRGDRSRRDDDRYLFLE 718 C + +IPFK++ L+G+ND + ++L+ P+ D + + L L+ Sbjct: 642 TFCNNFTLTNIPFKIIYLIGLNDNISSNTHESFDIYNLLKLHPRAYDPCDEINHKNLLLK 701 Query: 719 ALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA 778 L+SA++ YIS+ S + + ++I YI Q Y+ N +++ +K+ Sbjct: 702 TLLSAKKFFYISHQIVSNNYKKLNNIPIAIDKIIKYITQYFYIKNKNKDNFNDNLKDIKS 761 Query: 779 HLTCLHTRMPFDPQNY-QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETL 837 H+ +T + +N+ + ++ A+ +H EF++ LP +T+ TL Sbjct: 762 HIYHNYTFYAHEKRNFLEKLNYPNFNTTIWKMATLINNSHKEFIKKLPSIKNQTINYNTL 821 Query: 838 QRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERL 897 FW +P++ FF +RL + T ++ + L +Y++N+ LL + + + +L Sbjct: 822 ILFWKNPIQTFFHVRLNIQLNTTKNKHMHQNKHFINKLDQYKMNKTLLKFFLYKQNTNQL 881 Query: 898 FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLAC-NGVQITGWL 956 F+ ++ G +P G I WE + + L D+++ ++ + + + N + G L Sbjct: 882 FQYYKNIGIIPNNNIGNIIWEYTKKLITPLYDQIMKIKKILNNSKFCINVKNKCMLHGQL 941 Query: 957 PQV-QPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQ 1015 + GLLRW+ + LS + WLEHL+YC+ S L F L + Sbjct: 942 KNINSSGGLLRWKATKLSFQDIISCWLEHLLYCSLYKKHNSILIGTNHQIITFYKLENKT 1001 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A +YL + I GY +GM P+ +L +SG W+ YD +N+ + + A FL + Sbjct: 1002 AKYYLKKYISGYFDGMEQPI-LLTKSGINWINAIYDKKNNKFYTNTNKNLNAYKIFLNTW 1060 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 GN + GE DD + Q++ LT + ++ I + ++++L P+ + Sbjct: 1061 NGNNWITGEKDDPYIQKMIVYLTKKNIQKIYKTTKKWLTPILK 1103 >UniRef50_UPI0001C32181 exodeoxyribonuclease V, gamma subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32181 Length = 1143 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 311/1204 (25%), Positives = 482/1204 (40%), Gaps = 148/1204 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG----- 55 ML V+H++ D L A + ++ RL DPF E++ V + G+ +WL LS + G Sbjct: 1 MLHVHHADGADRLVAALAEVL-TVRLADPFAAEVVAVPTRGVERWLAQRLSGRLGTSPGA 59 Query: 56 ---IAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLR 112 I AN+ FP P + + + + W L+ L+ + L Sbjct: 60 GDGICANVAFPTPRRVVEEAIAAASGLDAATDPWRPERALWPLLELVDAASDEAWLGRLT 119 Query: 113 HYLTDDS-DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEG----LGEAQAWQAP 167 +L + D+ + A LF +Y ++RP L W G +G L WQA Sbjct: 120 AHLDRAAGDRSRRLSAVRHVATLFARYALHRPAMLRAWAAGSDEDGAGGALDAEHRWQAE 179 Query: 168 LWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL 227 LW+ L E G A L L LP R+ + G+++LP LQ L Sbjct: 180 LWRRLRERVGVPG-----PAELLDLGRARLVE-DPGLSDLPERISLFGLTSLPARDLQLL 233 Query: 228 QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 +AL + ++HL P W I D A +LTR + S Sbjct: 234 RALAERRDVHLFLLMPSPAAWRGIADAAGRGPILTRGQALSAA----------------- 276 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDL--ESSQELDAFVDVTPDNLLHNIQSDILEL 345 +PLLASWG+ GR+ LL L E+ PD LL +Q+DI Sbjct: 277 ------LPAHPLLASWGRDGRELQLLLEPLPTEAVHADAIGAGDEPDTLLARVQADIRAD 330 Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 R D L D+S+ HVCH R+VEVL D +L L +DP+L P Sbjct: 331 RTP-----------REDEPVQLGDGDASVQVHVCHGRARQVEVLRDAILHALADDPSLEP 379 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRY-----------------LPYAISDRRARQSH 448 RD+IVM DI++++P ++A FG+ AD L ++DR RQ++ Sbjct: 380 RDVIVMCPDIETFAPLVEATFGAGEADVGEALADDAVDLSGAHPAELRVRLADRSLRQTN 439 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 PVL LL L +R + ++L L+D + RF + E+ L + WV SGIRWG+D Sbjct: 440 PVLGVVTKLLELATARVTASELLDLVDREPVRRRFRLEEDELARVEDWVAASGIRWGLDA 499 Query: 509 DNVRELELPATGQHTWRFGLTRMLLGYAMESAQG-EWQSVLPYDESSGLIAELVGHLASL 567 + L Q TW GL R+L G AM G VLP D+ +L G A L Sbjct: 500 AHRAPFRLQHVPQGTWAAGLDRLLTGVAMAERPGHTLAGVLPLDDVDSSAIDLAGRFAEL 559 Query: 568 LMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ 627 L +L LA +P+ W + + ++Q ++ E Sbjct: 560 LDRLAAALDELAAPKPISAWATAIAEAADTMTATTPRDAWQRAELQQLLADVVEEATNDG 619 Query: 628 YGDAVPLSL--LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 AV L + + L RL F G + +CTL PMRS+P +V+CLLG++D V+ Sbjct: 620 VASAVSLDVADVAALLGGRLAGRPTRTNFRTGHLTVCTLQPMRSVPHRVICLLGLDDDVF 679 Query: 686 PRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 PR+ G D++ +P GDR R +DR + L+AL++A +L ++Y GRS + N+ER P+ Sbjct: 680 PRRSPRDGDDVLLDEPWIGDRDGRSEDRQILLDALMAAGDRLIVTYSGRSERTNAERAPA 739 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER-----Q 800 V + EL+D I ++ C R + + H PFD N+ P Sbjct: 740 VPIGELLDVIDRT---------ACAADGGRARDAVLVRHPLQPFDAANFAPSTLVPQRAW 790 Query: 801 SYAREWLPAASQAGKAH----SEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN 856 S+ L A G +PL + + L+ L F HPVRAF + RL V Sbjct: 791 SFDGVTLEGARALGGERGSRPPFLPRPLQPQDADVIELDQLLAFVGHPVRAFLRQRLGVG 850 Query: 857 FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIF 916 E D+ P L+ L+R+ + +LL A D RA G +P GA G+ Sbjct: 851 VDVGAGERSDSLPIELDPLARWGLGARLLAARRAGVDVGVAVADERARGSVPPGALGDQV 910 Query: 917 WETQCQEMQQLADRVIA---CRQPGQSMEIDLAC-NGVQITGWLPQVQPDGLLRWRPSLL 972 E++ + P +++++ +A +G + G + V L S + Sbjct: 911 LRGVVAEVEAILGAAAETVGAGGPLRTLDVRIALEDGRTLAGTIGGVGQYVLPVVTYSRV 970 Query: 973 SVAQGMQLWLEHLVYCASGGN---------------GESRLFLRKDGEWRFPPLAAEQAL 1017 + M+ W+ L A+ + R P + +A Sbjct: 971 DPRRRMESWVRLLALTAAFPERSLVATTVGRARRDVDRATTIARIAQPGGEPDVRRTRAH 1030 Query: 1018 HYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEG 1077 L+++++ Y GM PL + ++ + A + A+E Sbjct: 1031 AELARIVDLYDRGMREPLPLFRQTS---------------AAYAAGGATAVARAHTAWET 1075 Query: 1078 NMMVRGEGDDIWYQRLWRQLTPE--------------------TMEAIVEQSQRFLLPLF 1117 + E D +Q ++ P ++R L Sbjct: 1076 DFQPLREDLDPEHQLVFGGTLPFERLLAEAPRDDEQGEDWDMSEPSRFGRYARRLWSGLL 1135 Query: 1118 RFNQ 1121 + Sbjct: 1136 AHEE 1139 >UniRef50_UPI0000E0F593 exodeoxyribonuclease V, gamma subunit n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F593 Length = 1147 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 286/1183 (24%), Positives = 502/1183 (42%), Gaps = 119/1183 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVE---RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIA 57 M V SN+ ++L ++ ++ ++ + FEP I+V+S GM +L M +++K G++ Sbjct: 1 MFHVVPSNKQEILTQVLISFIQDDYQQGIRGVFEPTTIVVESQGMQHYLNMEIAKKTGLS 60 Query: 58 ANIDFPLPASFIWDMFVRVLPE-IPKESAFNKQSMSWKLMTLL--PQLLEREDFTLLRHY 114 NIDFPL + I+ + +L + +P++S F ++ + W + T+L P + Y Sbjct: 61 MNIDFPLVSREIYSICRSILGDKVPQDSPFKREYLVWNIFTILQDPGFISDPRAAYANAY 120 Query: 115 LTDDSDKR-KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALV 173 + + + F+L+ + AD+++QYL+YR DWL WE G+L + WQ +W+ LV Sbjct: 121 WQEQPEPLLQCFRLAKQLADVYEQYLIYREDWLTAWEQGNLKGLNDTLEPWQQLIWEQLV 180 Query: 174 EYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH 233 H A L I L + LP + I ++ L P ++ A+ ++ Sbjct: 181 A------IHPDHPAALRAAAISQLAT---HQAKLPKSITIFAVNTLSPTQIEFFSAVAQY 231 Query: 234 IEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQ 293 I+++L F NPC YWGD+ L + E + + + Sbjct: 232 IDVYLFFLNPCSQYWGDVVSDKVLLR---------------------ERLSKGIDELKAE 270 Query: 294 DVGNPLLASWGKLGRDYIYLLSDLESSQELD--AFVDVTPD---NLLHNIQSDILELENR 348 D+ +P+LA+ G+ GR L D+ D F+ T D +LL +Q+DI Sbjct: 271 DISHPILANLGQQGRGLFNQLQDINYPDMTDSQLFIAPTADDAPSLLKQVQADI------ 324 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 + + +D+SI H S REV+ LHD LL +L DP L P DI Sbjct: 325 -------ASAHVTPVTLHPEDIDASIQIHSGFSAIREVQTLHDELLRILTADPDLQPHDI 377 Query: 409 IVMVADIDSYSPFIQAVF-----GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 +VM ++ Y+PF+ ++F + L +I+DR S P + F+ +LSLPDS Sbjct: 378 LVMCPSVEEYAPFVNSIFRPSYKPAQTDSPQLVCSIADRAPLNSEPTVMMFLDMLSLPDS 437 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA--TGQ 521 RF ++ L +P + ++TE+ L W++ S I+WG++ + T Sbjct: 438 RFSVTKIIDYLRIPSVQKNLNLTEDELTLCINWLSMSQIKWGLNQAHKASWLDNEAVTEH 497 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 +TW +GL+R+ LG Q D GL + ++G L L+ +L+ +R L + Sbjct: 498 YTWEWGLSRLALGCLHSEMQEHHDEFAYVDAVEGLNSRILGKLLVLVNRLSTFRAQLNGD 557 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 + ++EW + ++M + F + A +IEQ + A Y + L+L+R+ L Sbjct: 558 KSIQEWERLLQEMSQSLFGETSTQLRAQQMIEQTISQFSKQVQTAGYESPIGLALVRESL 617 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 + + +FL G V +++PMRS+PFK++C+LG+NDG +PR P DL++Q Sbjct: 618 SDKFSTPDALNQFLTGQVTFSSMVPMRSVPFKMICILGLNDGAFPRIALPNSIDLIAQSE 677 Query: 702 K-RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 K RGDRSRR++DRYLFLEALISA+ LY+SY G+S +DN PS+++QEL+ Y+ Q Sbjct: 678 KQRGDRSRRNEDRYLFLEALISARDYLYLSYQGQSAKDNQTIEPSLVIQELLHYLDQKFI 737 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP-----GERQSYAREWLPAASQAGK 815 L + +E + + PF P + ++ S+ + WL A Sbjct: 738 LADPQ----NEKPEKFSERIVRRAPLQPFSPTLFASNEHDFEQKGSFDQGWLALAKSGVL 793 Query: 816 AHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGL 875 +P + + + + +P++ + V + + D EPF L+GL Sbjct: 794 PAKTSTITVPDDI--YLDHNDMTALFINPLKLHVNKQYDVVLDEYINVMDDVEPFSLDGL 851 Query: 876 SRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR 935 S+ ++ Q LN D + P G++ + L D + Sbjct: 852 SKDKLLVQALNTASATIDYDNANDM-GLDFVKPLVNTGDVSQWMLKSQQMSLYDGLHRTI 910 Query: 936 QP-----------------GQSMEIDLAC-------NGVQITGWLPQVQPDGLLRWRPSL 971 Q + +L +V L Sbjct: 911 AESLAQQPVTTARHNQVVKWQFEHFQFHVNALFAIDDEYHSHTFLHKVMTKSRLF----E 966 Query: 972 LSVAQGMQLWLEHLVYCASGGNGESRL------------FLRKDGEWRFP--PLAAEQAL 1017 L ++ M L+ + + +G L + P + EQA Sbjct: 967 LKLSLLMTHCLKLMCFGTTGDTSIRYLNSRERTTAGQKSVCLEVNTLHIPYDFMTPEQAD 1026 Query: 1018 HYLSQLIEGYREGMSAP--LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 L Y + + P + + ++ YD + ++ + + Sbjct: 1027 IVLKLFSAQYIQALREPHFIHLDVYQNLESIRRQYDKDVVSNFKQIPHIEYLLDDYGEQR 1086 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 E + + + L+ A+ + + P+ + Sbjct: 1087 EDKFSSYAWNVNTYCKWLFPHGFSHQDIALTNIDEWYFHPIIQ 1129 >UniRef50_A9BB00 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BB00_PROM4 Length = 1105 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 233/1166 (19%), Positives = 446/1166 (38%), Gaps = 115/1166 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNR + L ++ + E I+V + +WL +++ GI+A + Sbjct: 1 MLTIYRSNRAEWLANVLAEQLRANPP-GLSENVEIVVNTWPTGRWLGEEIAKINGISALV 59 Query: 61 DFPLPASFIWDMFVRVLPE--IPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 FP PA+ + + + L I + + + W ++ LP+LL++E+ +L+ +L D Sbjct: 60 RFPFPAAQLKTLVRKFLGIEVINDDDPWEANQLIWPILNSLPELLQKEEAGVLQKWLERD 119 Query: 119 SDK-----RKLFQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAWQAPL 168 + R +QL+ A FD+Y++YRPD ++ W E +L L + WQ L Sbjct: 120 LSQSGKLSRDEWQLAKTIAYTFDEYIMYRPDVISDWWGTENEINNLKSKLPKYIQWQPIL 179 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 L + Q + L+ LPS + I GI++L PV L+ +Q Sbjct: 180 INLLKQRITQ-----EPFGLQVRNVASKLKKGIAPKQNLPSDLRIFGINSLAPVQLELIQ 234 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 AL +E+ + PC+ W K + ++ N Sbjct: 235 ALSCIMEVKVFLLTPCKDLWSRCKTKRE----------------------EYGEGWKVAN 272 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDIL 343 L A+ G++G ++ LL L E D F L + +L Sbjct: 273 DKLWLLNKQRLEATLGRMGSEFEQLLEGSGEYQLGEWDEKDLFAMPATIALNKQRKPTLL 332 Query: 344 E-LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 E ++ R V IE RS DSSI+F C P+R+++++ D++L L + Sbjct: 333 EQIQQRLVTNECIEPLQRSL-------DDSSISFTECPGPKRQIQIVRDQILQQLALNKN 385 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLP 461 L P+DI++M ++ ++ I ++F A LP+ I+DR + + I L+ + Sbjct: 386 LEPKDILIMTPQVEKFAHLIPSIFNDVSATGVTLPWKITDRSQYDQPGLTQCIILLMEIA 445 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 +R + ++ LL PV+ + + + + + + E+G RWGI+ Sbjct: 446 CTRLTASNLDQLLTNPVIKDLYKLDDSEIDKITNCLQETGFRWGINSLER-----DGEET 500 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQS-VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 HT + L R L+G + + G + P+ + G+ + +L ++ +GL Q Sbjct: 501 HTLNWCLERWLVGMVIPTIPGLVLGGIAPFSK--GISISELSKWWEILSKICNMLQGLRQ 558 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 +W V + + + D + + I + + + ++ + Sbjct: 559 SHSCMKWGLVLKGLCDDLCNNDRKWSWERQRFLRAIDDWIRAADC--FKKEIKIEVVAEI 616 Query: 641 LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 + + +E G + I L PMR+IP K++ L+G+++ ++PR+ GF L+ K Sbjct: 617 VKDLIAKEAGRFGHRTGRITISALEPMRAIPHKMIVLMGLDETIFPRKQQRPGFSLLDHK 676 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 GD D DRY+ LEALIS ++ L I++ GR + PS VQ+ +Y+ Sbjct: 677 HFLGDPRINDKDRYVLLEALISTRETLLITWDGRDEKTGDSLEPSSPVQQFFEYLQHELG 736 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF 820 L S + + P +R R+W+ A + Sbjct: 737 EKSSMGLLKKPSPNPLNKNNFLSCNNQP----PISCDKRDLETRQWMNAKQGSRGLTLAL 792 Query: 821 VQPLPFTLPETVPLET---LQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSR 877 + L+ + A P + + ++ R + I D + + L + Sbjct: 793 PLNWNLSKNAVNSSSDNELLKSWLATPQLKWLEQ-FHLHPREWNKPIEDLDSLSIPELIK 851 Query: 878 YQI------------NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 ++I N Q+++ + + ++ ++ G P + + E + Sbjct: 852 FKILKQEFTELITSSNNQIISPEINERESPNWQDKYLGQGVFPPKSAATLESEILGRRWT 911 Query: 926 QLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 L + + + ++ G + + + + L + WL HL Sbjct: 912 SLIKSLSKLGEVKRDSLMEDNETGEIL------IANNCTVLVEIGRLKAKTILNTWLTHL 965 Query: 986 VYCASGGNGESRLFLRK----------DGEWRFPPLAAEQALHYLSQLIEGYREGMSAPL 1035 A + + + + + + + P+++ +A L +L + G+ Sbjct: 966 KLSAYHKSTKKTVVIARSDSNTKIDSYEVMLSWHPMSSIKAESILDELKQQAHNGLKQCW 1025 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR 1095 V PESG K Y ND F +A+ G+ GE + Q + Sbjct: 1026 PVPPESGWKLAKARYKKSNDCNEI-----------FRRAWIGDFNKEGERNKPEMQLCFG 1074 Query: 1096 QLTPETM----EAIVEQSQRFLLPLF 1117 + E + + PL Sbjct: 1075 YKAAPEIFLENELFDQCLELLYKPLI 1100 >UniRef50_D2U882 Probable exodeoxyribonuclease v, gamma chain protein n=1 Tax=Xanthomonas albilineans RepID=D2U882_XANAL Length = 1187 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 320/1171 (27%), Positives = 499/1171 (42%), Gaps = 124/1171 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPF-EPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 R+Y SN LD L AL+ + R + P PE++L+ M +WLQ TL+ G+AAN+ Sbjct: 60 FRLYPSNALDTLAALLAEELRRPLPEQPLLAPEVVLIPQVAMRRWLQSTLAATHGVAANL 119 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLP-QLLEREDFTLLRHYLTDDS 119 F P F+ R L + + S+ W+L L L L YL DD Sbjct: 120 QFLTPGEFVAHALERNLG--AADDDLDMTSLHWRLYAALRSDLGADPTLAPLAAYLADD- 176 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 D K + L+ + ++F++Y +R DWL +WE G + + QA LW+ + Sbjct: 177 DPLKPWTLAGELGNVFEKYQAWRRDWLLRWEAGADPDDV------QARLWRRIA------ 224 Query: 180 GQPRWHRANLYQRFIETLESAT-TCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 R +RA +++ P GLP R+F + + P L+ L + +H Sbjct: 225 -SGRAYRARRIGHYLDRYARPDGPLPQGLPPRLFAFAVLNISPDVLRVLATQARVGTLHF 283 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 P + YWGD++ + AG + EQ NP Sbjct: 284 YLPTPTQGYWGDLQTLWQRRR-----------------------AGTAVDLFAEQIQENP 320 Query: 299 LLASWGKLGRDYIYLLSDLESSQ---ELDAFVDVTP------------DNLLHNIQSDIL 343 LL +WG GRD++ L+ D E E+ + D D+LL +QSD+ Sbjct: 321 LLQAWGAAGRDFMALIGDYEVVHPLAEIAVYADPLESGQRPLADGGLGDSLLRRMQSDLF 380 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE---D 400 + +D D S+ H CH+ RE++VLHD+L A+L++ D Sbjct: 381 QRRAPRSPAAL----------PTVDKHDPSLQVHACHTRLRELQVLHDQLRALLDDPRLD 430 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 P L PR+I V+ +ID Y P++ AVFGS D LPYA++D S P+ E F++LL L Sbjct: 431 PPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASEPLAEVFLALLGL 490 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 P +RF ++L L+ +A + GL LR W++ +G RWG+D + R+ + PA Sbjct: 491 PIARFGLHEILDLIASAPIAEAAGLDTAGLDRLRGWLHAAGARWGLDAAHRRQHQAPADD 550 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +TWRF L R+LLG+A + V P+ + G + L LL L+ + LA+ Sbjct: 551 AYTWRFALDRLLLGHASGAEDDI-DGVAPWPQLEGSALAALDTLLRLLRVLDRHQAALAE 609 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAE---TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 P +W +L+A + A+ + + A+Y AVP ++ Sbjct: 610 PMPPAQWRECLLALLDALLPQTPSAPRAQRALERLRTLIDQFARDAARAEYTAAVPAEVV 669 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD-- 695 R L + L G ++ ++PMR +PF+ +CLLGMNDG +PR+ G + Sbjct: 670 RAHFTAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLLGMNDGDFPRRDPAAGLNRL 729 Query: 696 ---LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 L + + + GDRS R+DDR+LFL+ SAQ Y+SY+G +D S R PS LV EL+ Sbjct: 730 TAELGTARRRHGDRSTREDDRFLFLQLFASAQDVFYLSYLGADARDGSVREPSPLVGELL 789 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMP-------FDPQNYQPGERQSYARE 805 Q H P L H P R SY R+ Sbjct: 790 ACAAQYHAEPAAATT------------LVVRHPLQPFAAAAFGAIGAEAADPRRFSYRRQ 837 Query: 806 WLPAASQAGKAHSEFVQPLPFTLPE--------TVPLETLQRFWAHPVRAFFQMRLQVNF 857 W PA +P TLP ++ ++ L+RF P F + RL + Sbjct: 838 WRPAVDSLIGQRQPLPPWIPETLPAMADDALPTSLSIDELRRFLLDPAEQFLRQRLGLRL 897 Query: 858 RTEDSEIPDTEPFI--LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEI 915 D EP + GL +Y + QQ+ AL+ + + + L+ R RA LP G G Sbjct: 898 PDPAQADSDLEPLVAPTRGLDKYGLQQQVFEALLRE-ETDGLYERLRARALLPSGPLGRH 956 Query: 916 FWETQCQEMQQLAD---RVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL 972 + ++++ AD + + + +G ++ G L G+ R + L Sbjct: 957 QLDQHLRQLRPYADAFGHWCGATPAPPAARLHVHIDGTELHGRLSDWYAAGVGRVKIGAL 1016 Query: 973 SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAE-----QALHYLSQLIEGY 1027 S ++ LE L+ A+G F + PL E QA L+ L+ Y Sbjct: 1017 SGRSAIRHGLEWLLLRAAGEGAPFVRFFEHEDGLGPHPLDPERLSSTQAQQALTDLLRLY 1076 Query: 1028 REGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDD 1087 R+G PL +P S A+ + D + + + +A + +A + + G D Sbjct: 1077 RQGQQTPLAFVPYSSWAYYQAARGGDLDKAIKNAAAQWQAGFSWREADRPQLRLVCRGRD 1136 Query: 1088 IWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 + P+ A SQ L R Sbjct: 1137 PF-------ADPQRFAAFASTSQHIFGLLER 1160 >UniRef50_Q3BM39 Exodeoxyribonuclease V, gamma chain n=19 Tax=Xanthomonadaceae RepID=Q3BM39_XANC5 Length = 1184 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 327/1172 (27%), Positives = 513/1172 (43%), Gaps = 125/1172 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPF-EPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 R+Y SN LD L AL+ + R P +PE++L+ M +WLQ TL+ + G+AAN+ Sbjct: 56 FRLYPSNALDTLAALLAQELRRPMPGQPLLQPEVVLIPQVAMRRWLQSTLAAEHGVAANL 115 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLP-QLLEREDFTLLRHYLTDDS 119 +F P F+ R L + + + W+L L L L YL+ D Sbjct: 116 EFLTPGEFVARALERNLG--AADDDLDMATTQWRLYAALQSDLGSDAALAPLAGYLS-DG 172 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 D K + L+ + A +F++Y +R DWL +WE G + QA LW+++ Sbjct: 173 DALKPWALAGELASVFEKYQAWRRDWLLRWEAGADPDDP------QARLWRSIA------ 220 Query: 180 GQPRWHRANLYQRFIETLESAT-TCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHL 238 R +RA ++++ A P GLP RVF I + P L+ L + +H Sbjct: 221 -TGRQYRARRIGQYLDRHARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHF 279 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 P + YWGD++ + + EQ NP Sbjct: 280 YLPTPTQGYWGDLQTLWQRRREDGAVQL-----------------------FAEQVQENP 316 Query: 299 LLASWGKLGRDYIYLLSDLESSQ---ELDAFVDVTP------------DNLLHNIQSDIL 343 LL +WG GRD++ L+ D E E+ A+ D D+LL +QSD+ Sbjct: 317 LLQAWGAAGRDFMALVGDYEVVHPLAEIAAYADPLESGRRTLADGGLGDSLLRRMQSDLF 376 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE---D 400 A V ++ D S+ H CH+ RE++VLHD+L A+L++ D Sbjct: 377 HRRAPAAEAVLPA----------VNLHDPSLQVHACHTRLRELQVLHDQLRALLDDARFD 426 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 P L PR+I V+ +ID Y P++ AVFGS D LPYA++D S + E F++LL L Sbjct: 427 PPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASESLAEVFLTLLGL 486 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 P +RF ++L LL +A + E GL LR W++ +G RWG+D + R+ + P Sbjct: 487 PIARFGLHEILDLLASAPIAEAAGLDEAGLERLRSWLHAAGARWGLDAAHRRQHQAPGDD 546 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 +TWRF L R+LLG+A A + V P+ + G + L LL L + LA+ Sbjct: 547 AYTWRFALDRLLLGHA-SGADEDIDGVAPWPQLEGSALAALDTLLRLLRVLERHQAALAE 605 Query: 581 ERPLEEWLPVCRDMLNAFF---LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 EW +L A + A+ + + + A+Y VP ++ Sbjct: 606 AMTPVEWRERLLGLLEALIPTMPTAPRAQRALDRLRALIVQFARDAMRAEYAGKVPAEVV 665 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD-- 695 R A L + L G ++ ++PMR +PF+V+CLLGMNDG +PR+ G + Sbjct: 666 RAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGLNRL 725 Query: 696 ---LMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 L +++ + GDRS R+DDR+LFL+ SAQ Y+SY+G +D S R PSVLV EL+ Sbjct: 726 TAELGTERRRHGDRSTREDDRFLFLQLFASAQDVFYLSYLGADARDGSVREPSVLVSELL 785 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPF----------DPQNYQPGERQSY 802 Q H + + L H PF + R SY Sbjct: 786 ASAAQYH------------AASNALDTLVVRHPLQPFAAAAFGALGDESDAGADPRRFSY 833 Query: 803 AREWLPAAS----QAGKAHSEFVQPLPFT---LPETVPLETLQRFWAHPVRAFFQMRLQV 855 R+W PA Q LP LP ++ ++ L+R P F + RL + Sbjct: 834 RRQWRPAVDSLVGQRQPLAPWVAGALPAEGIALPASMSIDALRRLLTDPAGQFLRHRLGM 893 Query: 856 NFRTEDSEIPDTEPFI--LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFG 913 E D EP + GL +Y + QQ+ +A + D E L+ R RA LP G G Sbjct: 894 RLPDPAGEDADLEPLLAPTRGLDQYGLQQQIFDAALAG-DTEHLYARLRARALLPSGPLG 952 Query: 914 EIFWETQCQEMQQLADRVIACRQ--PGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSL 971 + + +++ AD R P QS + + + +++ G +P G+ R + Sbjct: 953 RRQLDERVAQLRPYADAFRQWRGESPAQSRRLQVQIDEIELHGRVPGWYASGVGRVQVGA 1012 Query: 972 LSVAQGMQLWLEHLVYCASGGN-GESRLFLRKDGEWRFP----PLAAEQALHYLSQLIEG 1026 LS ++ LE L+ A+G + R F DG P PL+ QA L++L++ Sbjct: 1013 LSGRSAIRHGLEWLLLRAAGEHAPYVRFFEHDDGLGPHPIDAQPLSQTQARTALAELLQL 1072 Query: 1027 YREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGD 1086 YR+G+ PL P S + + D + + + ++ + +++ + + G Sbjct: 1073 YRQGLQMPLAFAPYSSWKYHQAARGGDLDKAIKEAAGQWQSGFGWSESHSPELRLVTRGR 1132 Query: 1087 DIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 D + + S R L + Sbjct: 1133 DPF-------ADAQRFAEFAATSHRVYALLEQ 1157 >UniRef50_Q7VBK2 Exonuclease V gamma subunit n=1 Tax=Prochlorococcus marinus RepID=Q7VBK2_PROMA Length = 1103 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 237/1164 (20%), Positives = 449/1164 (38%), Gaps = 114/1164 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML VY SNR + L ++ + + PF+ I+V + ++WL ++ GI+A I Sbjct: 1 MLTVYRSNRAEWLAEVLAAQLRLNKPK-PFQSVEIMVNTWPTSRWLSEQIATFNGISALI 59 Query: 61 DFPLPASFIWDMFVRVLP-EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 +FP P S + L E+ + +N ++W+++ +LP+LL+ E+ L ++ S Sbjct: 60 EFPFPNSHLRKFVQLFLGLEVTSKDPWNTNQLTWEIIDVLPKLLKEEESKHLHEWIQKGS 119 Query: 120 D-----KRKLFQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAWQAPLW 169 + ++++ L+ A+ ++Y++YRPD +AQW + + L WQ L Sbjct: 120 NNNKELDKRIWTLAKSIANTINEYILYRPDVIAQWWNLDSKPTKSLRDLPPHIKWQPLLL 179 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + L + L+ LP + I G+S+L P+ ++ +QA Sbjct: 180 RLLKTKIKS-----EPICLQINEVVTRLKRKEHSSKELPRDLLIFGVSSLAPIQIELIQA 234 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L + + + P + W K Sbjct: 235 LSSVVNVQIFLLTPGQDLWKRCKSRRE-----------------------ELGNDWKVPM 271 Query: 290 DGEQDVGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDIL 343 DG + P + AS G++G ++ LL L QE D F ++ + L Sbjct: 272 DGMWMLKTPRIEASLGRMGSEFQQLLEGSGEYQLGEWQEKDLFSMPVKIATYNSKEPTFL 331 Query: 344 E-LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 E L+ V + R D+S+ F +R+V+++ D+++ L D T Sbjct: 332 EQLQESLVVNKASIQLHRKHK-------DNSLIFLESPGQRRQVQLIRDQIIQWLATDDT 384 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPA-DRYLPYAISDRRARQSHPVLEAFISLLSLP 461 L PRDII+M + +P I +VF A + LP+ I+DR + +++ + + + Sbjct: 385 LQPRDIIIMTPQVKRLAPLISSVFNDISATNVNLPWKITDRSQIEKPGLIQFILEFIDIA 444 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 SR + ++ LL P L +F + ++ + + + E+G RWGID+ + Sbjct: 445 SSRLTALNLDRLLTNPALQNQFKLDQDEVDRITYCLYETGFRWGIDEKDRN-----GNST 499 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 H+ + L R LLG + + + + S+ + E + +LL L + L Sbjct: 500 HSLEWCLERWLLGIVLPNEPNFVEGDIAPFSSTFTVNE-ITKWWNLLSLLCKHLKALRNS 558 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 R +W+ + ++ ++ L + + + ++++ L Sbjct: 559 RKSNQWVFQLKSIVTDLLENESNRTWEGELFNITIENWSQDSNDCILN--IQPLVIKEIL 616 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 + E +G + I L PMR+IP +V+ L+G+++ V+PR F+L+ QK Sbjct: 617 TELFSLENGRFGHRSGKITISALEPMRAIPHRVIVLMGLDELVFPRSEERPSFNLLEQKR 676 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 GD + D DRY+ LEA++S +Q L I++ R + + + + IDY+ Sbjct: 677 LLGDPNNCDKDRYVLLEAIMSCRQHLLITWNSRDEKTGEKLEAPAPINQCIDYLKNELSE 736 Query: 762 PGDEALNCDESEARV-KAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAH--S 818 L + + + P R AR +L ++ + Sbjct: 737 SDQLGLVQSPPPNPLSNENFIATEYQQPISC-----DRRNLEARIFLDNFTKPKQTALGI 791 Query: 819 EFVQPLPFTLPETVPLETLQR-FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSR 877 F + + E++ + + + P + + LQ+ R + I + F L L R Sbjct: 792 PFRWEINYKFKESILTNDIVKSWLRAPQITWLE-HLQLRSREKKISIETIDTFNLNELQR 850 Query: 878 YQINQQLL--NALVEQDD--------AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL 927 YQ+ + L +E D+ A+ ++ R G LP + E+ E + L Sbjct: 851 YQLLNEELFTQNNLESDNNVLPILLGADDWQKKLRGQGILPPKSAAELECEILEARIASL 910 Query: 928 ADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVY 987 + + + E +L N IT + Q + +L L A M WL+HL Sbjct: 911 SSLIRDLG---ELEEKNLQINNENITYLIIQ---EDILVVEIGKLKSATIMSAWLQHLQV 964 Query: 988 CASGGNGESRLFLRKDGE----------WRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 C L + + F P+ + A+ L + +G++ V Sbjct: 965 CLYDDKPRKTLIISRSTTKSSQHQYKLSAEFTPILKKDAMEMLQTIYMLVEQGLTECWPV 1024 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR-- 1095 P+SG K Y + ++ F + ++G+ GE + + Sbjct: 1025 PPQSGWELFKARYMKKTNSN-----------NYFKKKWKGSFNQHGENHNSEMILCFGYD 1073 Query: 1096 -QLTPETMEAIVEQSQR-FLLPLF 1117 I E P+ Sbjct: 1074 CDAELFLGNKIFENCLNILYQPIL 1097 >UniRef50_C6NU56 Exodeoxyribonuclease V gamma chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU56_9GAMM Length = 1146 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 325/1163 (27%), Positives = 489/1163 (42%), Gaps = 108/1163 (9%) Query: 4 VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFP 63 V H +RL+ L + + L P + LVQS + +WLQ L++ GI A I Sbjct: 11 VLHGDRLEDLLTAIRQWLGANPLP-PLVEDTFLVQSNAVGEWLQWQLAEGDGICAGIRVS 69 Query: 64 LPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQLLER--EDFTLLRHYLT--D 117 LPA F+W+ + RVL +P ++ ++K ++ W+L+ LLP+L L YL D Sbjct: 70 LPARFLWESYRRVLGPRGVPDDTVWSKAALRWRLLRLLPRLAHEADPGGVPLLRYLATTD 129 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH--------LVEGLGEAQAWQAPLW 169 S + ++L+ ADL DQY VYR DWL W G ++ L + Q WQA LW Sbjct: 130 SSALERRWRLAGLLADLLDQYQVYRADWLKDWAAGRWTLRDGRGVLRDLPQDQRWQAQLW 189 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 L + G R +++ F++ L A LP R+ G +LP L+AL A Sbjct: 190 HWLCREVTEGGSHFAGRGEIHEAFLQRLREAAPGSLDLPPRLIFFGAVSLPAQSLEALAA 249 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 LG+H+++ + NP Y+W D+ + Sbjct: 250 LGRHLQVLMAIPNPSAYHWSDV---------------------AGADEDLRRQRRRRVLG 288 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---------LDAFVDVTPDNLLHNIQS 340 E G LLA+WG+ GRD++ LL + S E +D F + T LL +Q+ Sbjct: 289 TSEAGFGPRLLAAWGRQGRDFMRLLDRFDESVEMGPLWGLQRVDFFTEDTGTTLLRQLQT 348 Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 I +L + G R L D S+ H + P RE++VL D LL L Sbjct: 349 RIRDLVDSREPG------------RTLAENDDSLVLHSSYGPLRELQVLQDELLLRLGRG 396 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAISDRRARQSHPVLEAFISLL 458 L PRDI+VMV DI SY+P +QAVFG RY+P+ I D ++ ++ A + LL Sbjct: 397 RGLRPRDIVVMVPDIASYAPLVQAVFGVYGKNDPRYIPFHIVDLTPQERSNLIRALVWLL 456 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 LP R ++ LLD L RF + E L + W+ + G RWG+ + +L A Sbjct: 457 GLPQGRVTQSEIRDLLDCSALQRRFGLAPEDLPQIHAWLEQGGWRWGLSAAHRADLGFAA 516 Query: 519 TGQHT-WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 G T F L +LLGY + + + E L A L+G L L +L WR+ Sbjct: 517 CGAPTSGAFALQSLLLGY-TNGSDSHFDGIEACAEVGSLDAALLGKLWVLWERLESWRQR 575 Query: 578 LAQERPLEEWLPVCRDMLNAFF-LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 L + E W+ R +L FF D A+ +E + + + A + +PL + Sbjct: 576 LKEATTPEHWVERARQLLADFFVASDTADREALEQLESALEDWLLQTEKAAWDGPLPLEI 635 Query: 637 LRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 R+ L+ FL G V CTLMPMRSIPF++VCLLGMND YPR FDL Sbjct: 636 FREAWLDGLESAGDGA-FLGGGVTFCTLMPMRSIPFRMVCLLGMNDEDYPRPDPRRDFDL 694 Query: 697 MS--QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 M+ + GDRSRR+DDRYL LEAL+SA+ LY+S+ GR ++ R PS L+ +L Sbjct: 695 MTLPDMARPGDRSRREDDRYLMLEALLSARDGLYLSWTGRDPRNQENRAPSALILQLQRE 754 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAG 814 I L PF P+ +P +S+AREW P ++ Sbjct: 755 IVGIW-------------GEDALRTRLHLDPLQPFSPRYLEPDGPESFAREWFPVSTVED 801 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 ++ + P + L L+ + + +F+ +RL V D D E F L+G Sbjct: 802 RSVAVLSPPAARL---ELALLDLKGALSDALASFYALRLGVESPWRDRMAADDEAFRLDG 858 Query: 875 LSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVI-- 932 L ++QI QQL + G LP A G + + M+ L Sbjct: 859 LGQWQILQQLWERAASPAELREGLAAEARRGHLPLAAAGILQQQRLLTLMESLLGSWQAV 918 Query: 933 --ACRQPGQSMEIDLACNGVQITGWLP------------QVQPDGLLRWRPSLLSVAQGM 978 A + +E + +G ++ LP ++ W + + Sbjct: 919 AEALGPEHEVLEDEFLGDGFRLQARLPKDRSWNANPLGIHLRRHTSKLWHGGKARADRLL 978 Query: 979 QLWLEHLVYCASGGNGES-RLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 WLE V G LFL +DG P A L++L+ E + P + Sbjct: 979 LWWLELTVLQTKRREGAVLGLFLGQDGWLCAPA--PVAADESLAELLAWLGEALREPHPL 1036 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQK-ARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ 1096 + A L + A + + + + WR Sbjct: 1037 SLDWALALLADADRGDGAGSRRHILGDGRGAAGAWRENWLLQRHFP----NPEAVLEWRS 1092 Query: 1097 LTPETMEAIVEQSQRFLLPLFRF 1119 + ++ ++R P R+ Sbjct: 1093 SAGLSA---LDLARRIYEPYRRW 1112 >UniRef50_D0L8X4 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8X4_GORB4 Length = 1151 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 276/1197 (23%), Positives = 455/1197 (38%), Gaps = 131/1197 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLS--------Q 52 ML ++ + R D A + LDDP PE++ V + G+ +WLQ L+ + Sbjct: 1 MLHLHRAERTDT-LADALADLLATPLDDPMSPEIVAVPAAGVERWLQQHLATRIGCGTTR 59 Query: 53 KFGIAANIDFPLPASFIWDMFVRVLPEIP----------------KESAFNKQSMSWKLM 96 GIAANI+F PA+ + +L E + + + W ++ Sbjct: 60 SDGIAANIEFLSPAALADAVTAALLTEAAGTDTANAGHEHSAGGGADDPWRPSVLVWSVL 119 Query: 97 TLLPQLLEREDFTLLRHYLTDDSDKR----KLFQLSSKAADLFDQYLVYRPDWLAQWETG 152 +L ++ + ++ ++ + + F + ADLF++Y RP LA W G Sbjct: 120 RVLDDRIDDPELAMIARHVGGGDETSPRIGRRFATARHLADLFERYGRARPTMLAAWAQG 179 Query: 153 HLVEG----LGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLP 208 +G +G +WQ W+AL + H A L A LP Sbjct: 180 RDEDGAGGHIGADLSWQPGFWRALRAEVGRP-----HPAEALGDLCARLR-ANPAVTDLP 233 Query: 209 SRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHS 268 R+ + G + + + L AL +H ++H+ +P W I Sbjct: 234 ERLSVFGPTRVTEEFRALLVALARHRDVHVFLPHPSPVLWEAISSSTVAGDRPEETHSPR 293 Query: 269 FEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVD 328 DR LP + +PLLAS RD L L+ ++D + Sbjct: 294 RADRRLPA------------------IAHPLLASL---SRDVQELELRLQPHADVDVHHE 332 Query: 329 VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEV 388 ++L + G D ++ P DSS+ H CH P+R+VEV Sbjct: 333 ----SVLG---------HRPTLLGALHAGLCADDLRQQAVPADSSVEIHACHGPERQVEV 379 Query: 389 LHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR---YLPYAISDRRAR 445 L DRLL + +DPTL PRD+++M D+++++P I+ FG A L ++DR R Sbjct: 380 LRDRLLHLFADDPTLQPRDVLIMCPDVETFAPLIRGAFGQAGLAHPAFALRVRLADRGVR 439 Query: 446 QSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWG 505 Q +P+L+ +++ L R + +V LL + + RFD+T++ L +R W+ S +RWG Sbjct: 440 QVNPILDVVGAVVELAAGRVSAGEVADLLGLEPVRTRFDLTDDDLDRVRDWLAGSNVRWG 499 Query: 506 IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSV-LPYDESSGLIAELVGHL 564 I L GQ T+ GL R+LLG E GEW LP +L G Sbjct: 500 IGLGQRARFGLDGFGQGTFEAGLDRILLGVVAEEQDGEWLGTALPLAGVESTEIDLAGRF 559 Query: 565 ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL 624 A L +L+ L + P + W +++A + + E Sbjct: 560 AEFLARLSTTLEALTETGPRDRWRDALTGVVDALTATSPGDDWQRAQAIRLITDAFGESG 619 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGV 684 A+ + L+ +RD +A L F G + +CT++PMRS+P +V+ LLG++ V Sbjct: 620 PAE-PTVLRLADVRDLMAALLAGRPTRSNFRTGELTVCTMVPMRSVPHRVIVLLGIDGEV 678 Query: 685 YPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 +PR G DL+ P G+R+ RD+DR FL+A+ +A + L + Y G P Sbjct: 679 FPRVQRIDGDDLLGVDPLVGERNPRDEDRQCFLDAICAATETLLVFYSGADPVSGRRIPP 738 Query: 745 SVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG------E 798 +V+V EL D + A D HT FD +N+ G Sbjct: 739 AVVVSELADTLRTLIDPARSPAAAVDP---------VRHHTLHGFDQRNFLDGGVAGVAG 789 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTLP--------ETVPLETLQRFWAHPVRAFFQ 850 S+ E L A + V ++P + L+ L F P+ + + Sbjct: 790 PFSHDAELLDGARAMRTPATTAVPMAARSVPVDDDPDEAGDIDLDLLIEFHTDPIAGYLR 849 Query: 851 MRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYG 910 RL +S D L+ L + I ++ L ++ E G LP Sbjct: 850 QRLGARIPRAESAHDDQLDVDLDPLESWGIGERFLKRMLGGASIEECQAAELRRGTLPPF 909 Query: 911 AFGEIFWETQCQEMQQLADRVIACRQPGQS-MEIDLAC-NGVQITGWLPQVQPDGLLRWR 968 AFG + Q L V R + +++D+ +G ++ G +P V + Sbjct: 910 AFGTRTLASISTVAQNLYRNVAVLRDGSPAMLDVDVTLPDGRRLYGTVPNVFGQRFVTAT 969 Query: 969 PSLLSVAQGMQLWLE--HLVYCASGGNGESRLFLRKDGEWRFPPLA---------AEQAL 1017 S L Q + W+ + A GN + R A + A Sbjct: 970 YSRLKAKQQLTEWIRIVAVAAAADQGNPVAGRVDSGVVVGRAARGAGAARVTFGRPDDAA 1029 Query: 1018 HYLSQLIEGYREGMSAPLLVL----------------PESGGAWLKTCYDAQNDAMLDDD 1061 L LI G+ PL + P+ G + + + A L Sbjct: 1030 RILHDLIRIRDAGLEQPLPLPAEAAAAFAQHDAGGRRPDWGLVNARRSFSGKFGAHLQPH 1089 Query: 1062 STLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFR 1118 L + +++ R +D + P ++ PL + Sbjct: 1090 VRLVFGGDALAEVTFEDILARKAVEDNVLAGIMAPADP-DDPLFCALARAIWSPLLQ 1145 >UniRef50_A2C3H2 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=2 Tax=Prochlorococcus marinus RepID=A2C3H2_PROM1 Length = 1097 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 227/1162 (19%), Positives = 444/1162 (38%), Gaps = 112/1162 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SN+ + L ++ + + E I+V + ++WL LS I A + Sbjct: 1 MLTIYRSNKAEWLAEILGQELRLNPPE-ITEEVNIIVSTWPSSRWLSEKLSIINNINALV 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKE-SAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 +P P +++ + R++ P E + K + W ++ LLP+L++ E+ ++R +L Sbjct: 60 KYPFPGTYLKRLVKRIIGIDPDEKDPWEKNQLVWNILELLPELMKEEEAQVIRSWLEISD 119 Query: 120 DK-----RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE 174 K L+ L++ A+ FD Y++YRP+ + QW + + E + LW+ ++ Sbjct: 120 KKDTQINLNLWDLANNIAETFDDYILYRPEIIKQWLSKKTKKRSREISVNKNILWQEILF 179 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 + ++ I+ L+ P +++ G+S+L P+ + +QA K I Sbjct: 180 NLLYKKINKDPFCIQVEKAIKRLKKDDISKLDYPKNLYVYGLSSLAPLQIDLIQAFSKVI 239 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 I + +PC W + + D + Sbjct: 240 NIKIYIISPCNDLWQRCEARRLQFRNT-----------------------WNTPPDRQWL 276 Query: 295 VGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDILELENR 348 + +P L A G++G +Y LL L E D F +L +I ++ N Sbjct: 277 IESPRLEAFLGRMGAEYQQLLEGSGEYQLGDRNEEDIF------SLTADIATNKGNKPNL 330 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 ++S+N + D S+ F R+VEV+ D +L + ++ + PRDI Sbjct: 331 LEQLQQELLSTKSENILTKEKSDKSLLFLKSPGKYRQVEVIRDYILQLFSDNREIQPRDI 390 Query: 409 IVMVADIDSYSPFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 ++M +DSY+P I +VF + + LP+ I+D+ ++ ++L + SR + Sbjct: 391 LIMTPQVDSYAPIITSVFNNIDKNTTQLPWVITDKSQEDKVGLIHFVLNLFEISVSRLTA 450 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 LL P L + +I+ + + + + + +G WG+D H+ + Sbjct: 451 SIFENLLINPALRTQQNISIDEVSDIIKNLQSAGFTWGLDSSERY-----GEETHSLCWC 505 Query: 528 LTRMLLGYAMESAQ-GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEE 586 L R LLG + + PY E+ AE + +L +L + + +R +E Sbjct: 506 LERFLLGLVLPDNPINGISHISPYSENISS-AEFIKAW-GILSKLCNYIDVIRSKRSCKE 563 Query: 587 WLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD 646 W+ + ++ F E + + + +++D + + L Sbjct: 564 WIKLITSLVKDLFGDGGEWAWEEQQLLTVVNNWG--LITDNCELEIDCLVVKDIITKALS 621 Query: 647 QERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR 706 G + I L PMR+IP K++ ++G+ +PR F+L+ +K + GD Sbjct: 622 STNGKFGHRTGKITISALEPMRAIPHKIIIIMGLESRTFPRIENRRSFNLLERKRELGDP 681 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEA 766 ++ D DRY LEALIS +Q L +S+ + + + P +Q+ ++Y+ + Sbjct: 682 NQYDKDRYSLLEALISTRQNLLVSWNSKDEKTGEDLEPPSPIQQWLNYLKIKLGDNTFKD 741 Query: 767 LNCDESEARVKA-HLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLP 825 + + + + + AREWL A LP Sbjct: 742 ILIEPPANPLDHFNFIKTENSQIMSC-----DRKNLEAREWLEKAI----PTKNISLALP 792 Query: 826 FTLPETVPLETLQR--------FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSR 877 + + + L+ + +P + + ++ R + I D + L L R Sbjct: 793 LKR-KEINVSELKSYSFEKTKEWLLNPQITWLKEH-EIQSREFVNLIEDNDFLELSELER 850 Query: 878 YQINQQ------LLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV 931 Y++ + LLN ++D+ + G P G I + + L + Sbjct: 851 YKLLKHRLQSSDLLNINHTKNDSNYWEENYSGKGVFPPKGSGLIEKDLLQERWNNLISAI 910 Query: 932 IACRQ-PGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCAS 990 A + +S+E+ G L++ L M WL HL A+ Sbjct: 911 YATGKITKRSIEMQELEGEFYFGG-------KNLIQIEVGSLKYKTLMNGWLNHLYLSAN 963 Query: 991 GGNGESRLFLRKDGEWR----------FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPE 1040 L + K ++R P+ ++A L QL G + + PE Sbjct: 964 SSFNYKTLIISKKTDYRKKIQFEVSKEILPINTKEAKKNLRQLHRLATAGRNNCWPIPPE 1023 Query: 1041 SGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ---- 1096 SG + D + F + +EG++ +GE + + + + + Sbjct: 1024 SGLDYALATKDNNKNEQ-----------DLFQKKWEGDLYRQGERETLAMELCFGKKCKA 1072 Query: 1097 LTPETMEAIVEQSQRFLLPLFR 1118 T E+ + P+ + Sbjct: 1073 STFLDFESFNDVLMTLYEPILK 1094 >UniRef50_A2C8A0 Possible exodeoxyribonuclease V gamma chain n=4 Tax=Cyanobacteria RepID=A2C8A0_PROM3 Length = 1103 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 250/1168 (21%), Positives = 436/1168 (37%), Gaps = 119/1168 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML +Y SNR + L ++ + F+ ++V + ++WL L+ GI+A + Sbjct: 1 MLTIYRSNRAEWLARVLAEQLRLAPP-GLFDSVDVVVNTWPTSRWLGEQLASVNGISALV 59 Query: 61 DFPLPASFIWDMFVRVLP-EIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 FP P S + + +L + E + + W L+ LLPQLLE E+ LR ++ Sbjct: 60 RFPFPGSRLRQLVRMILGIDSDAEDPWRASRLVWPLLDLLPQLLETEEAAPLREWVNRQP 119 Query: 120 DK-----RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL-----VEGLGEAQAWQAPLW 169 + R +QL+ AD FD Y +YRP + QW G + + WQ Sbjct: 120 SRPGHLNRVQWQLARSIADAFDDYALYRPKLIHQWLEGSDRLLNSSQEMPLTLRWQPL-- 177 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + R + L + LPS++ + G+S+L PV ++ +QA Sbjct: 178 ---LLRLLAERLNVEPFGIQVHRAVSKLRNGDHPAMALPSQLRLFGLSSLAPVQVELIQA 234 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L +++ + PC W + + Sbjct: 235 LSGLVDVQMFLLTPCPDLWQRCRSRRETL-----------------------GNEWTEPA 271 Query: 290 DGEQDVGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDIL 343 DG + P L A G++G ++ LL L QE D F Sbjct: 272 DGFWLLEAPRLEAILGRMGAEFQQLLEGGGESQLGQWQEGDLFAAPATMACESG------ 325 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 + DSS+ F C R+V+++ D++L DP+L Sbjct: 326 QEPTLLEQLQQQLVSPDDHQPLRRRQEDSSLQFLACPGQWRQVQLVRDQILQWFAADPSL 385 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLPD 462 PRD++VM ++ ++P + +VF A A LP+ ++DR + S + + + LL + Sbjct: 386 EPRDVLVMTPQVNRFAPLLASVFNDAAATGVELPWRLTDRSQQDSPGLTQGMLQLLQIAG 445 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 R + + LL P + + +++ L + + +G RWG+D + H Sbjct: 446 ERLTATALEGLLANPAIQQQQGFSQDDASSLSRCLQRTGFRWGLDAEER-----GGDETH 500 Query: 523 TWRFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 + + L R LLG + S G P+ E GL + LL Q + + + Sbjct: 501 SLIWCLDRWLLGLVLPSTPGLAPGGAAPFAE--GLEPAQLAKWWQLLAQFSRQLKEFRRA 558 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 R W+ + + + F + + +GA + +++ D L Sbjct: 559 RTCGAWVELLQGFVEELFGDGGSWAWERQCLLIALEDWRQ--IGADCTLLLEAAVVADVL 616 Query: 642 AQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 + L + G + + L PMR+IP +V+ L+G++ V+PR GF L+ Q+ Sbjct: 617 NEALSADSGRFGHRTGALTVSALEPMRAIPHRVIVLMGLDADVFPRHRERAGFHLLEQQR 676 Query: 702 KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL 761 + GD D DRY+ LEAL+S +Q L I++ R R + VQ+ + + Sbjct: 677 QLGDPRSSDQDRYVLLEALMSTRQHLLITWNSRDEHTGECRPAASPVQQWLGRLQHELSD 736 Query: 762 PGDEALNCDESEARVKAHLTCLHTRMP---FDPQNYQPGERQSYAREWLPAASQAGKAHS 818 + L + + ++ P D ++++ AR WL Sbjct: 737 ETFQGLCREPAANPLERSNFLSQGSQPPPSCDRRHFE-------ARRWLDKTLAPPPLAL 789 Query: 819 EFV---QPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGL 875 + + E L R+ P + + QV R + D E L+ Sbjct: 790 ALPLHWSSVSLEASAVISSELLLRWLIAPQLIWLEQ-FQVTPREWFDPVEDLEALDLDEW 848 Query: 876 SRYQINQQLL-----------NALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEM 924 R+ + +Q L NAL++ +A R+ G LP GA + E Q Sbjct: 849 HRHGLLKQRLSELLGHLPTDENALLQGSEAGDWKHRYAGQGTLPPGAAATLECERLEQRW 908 Query: 925 QQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEH 984 Q L +++ P + ++LA Q+ D ++ +P L M+ WL H Sbjct: 909 QHLQATLLSM-GPCSTRRLELADGSRQML-----WAGDTVVVVQPGQLKSRGVMEGWLSH 962 Query: 985 LVYCASGGNGESRLFLRKDG----------EWRFPPLAAEQALHYLSQLIEGYREGMSAP 1034 L CA+ + + + + G R+ PL AEQA L L +G+S Sbjct: 963 LQVCANHTLTSATVVVARCGPAAKKDQFEIALRWQPLPAEQAREQLIALQALACQGLSQC 1022 Query: 1035 LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094 V P SG A+ ++ + F Q++ G V+GE + Q + Sbjct: 1023 WPVPPMSGWAYANA-----------NNKLAGRGEEAFRQSWSGGFNVQGERERAEMQLCF 1071 Query: 1095 R----QLTPETMEAIVEQSQRFLLPLFR 1118 + + PL Sbjct: 1072 GLNCEASELLNSAGFEQANTSLYGPLVE 1099 >UniRef50_C6HV34 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV34_9BACT Length = 1124 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 308/1181 (26%), Positives = 510/1181 (43%), Gaps = 129/1181 (10%) Query: 2 LRVYHSNRLDVLEALMEFIVE---RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAA 58 +R++ S+R+++L + E DP P ++ Q+ +WL L+++ GI+A Sbjct: 3 IRLFESHRMEILAEAFVATLASAAEEGDLDPLRPRTVIPQNPVTGRWLSFYLARRTGISA 62 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 ++D PL +I F R+ F+++++ +++ LLP LL F+ + H+ D+ Sbjct: 63 SLDLPLAGRYIRGFFDRLHGPASGTLHFDRETLLLRILALLPDLLPLPAFSPVAHFAGDE 122 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETG--HLVEGLGEAQAWQAPLWKALVEYT 176 + +L+ L++ ADL+D+ ++YRP+ L WE G + + W A LW+ L Sbjct: 123 PESLRLYDLAALLADLYDRSMIYRPELLLAWEEGLGGRDDDPVGPEGWPAVLWRLL---- 178 Query: 177 HQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKH--I 234 HRA + RF+ P LP + + G++ + P+ L+ + LG+ Sbjct: 179 -SGPDRPLHRARMMVRFLSG--EDPVPPEILPPALTLFGLTGMAPLDLRFFRTLGERHGC 235 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 + L F NP R YWGD+ +R+R + E + LFR Sbjct: 236 AVDLFFLNPSREYWGDVV--------RSRRREETPESLQPYLFR---------------- 271 Query: 295 VGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVN 354 G PLL+SWG R L+++ + F P LL IQ DIL L +R + Sbjct: 272 -GTPLLSSWGGEFRTVHESLAEIPEAHR--LFFGTEPGGLLGQIQEDILTLFDRGEEVRS 328 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 ++ + D S+ RE+E+L DRLL + DPTLTP D++V+ D Sbjct: 329 GR-----IERKEIPRADRSVEIVSATGRVREIEMLRDRLLELFAGDPTLTPEDVVVLAPD 383 Query: 415 IDSYSPFIQAVFG---------------------SAPADRYLPYAISDRRARQSHPVLEA 453 I Y+ +++VF S D +P+ ISDRR + P +A Sbjct: 384 ILPYAGIVRSVFSPGISPSGGRAGTNGGEGSAGSSEDGDPRIPFVISDRRETDASPAFQA 443 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 + LLSLP R ++ LL VP +A RFD+ + + +R+ + E G RWG D ++ E Sbjct: 444 LLLLLSLPGERVTVSHLVTLLAVPSIARRFDLGGQKIDRIREILAEGGFRWGRDIEDRSE 503 Query: 514 LELPATGQHTWRFGLTRMLLGYAM-ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572 + P+ H++ +GL R+LLGYA E V P + E+ G L+ L L+ Sbjct: 504 V-APSVDTHSFFWGLDRLLLGYACGPEEAPEGLPVPPVAVTEDPGGEIAGALSRFLWTLD 562 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 L P EW + +L FF P AE + + ++ I A + + Sbjct: 563 RHLERLKDPHPAREWPGLLATILEIFFDP-AEGDPVLEILFALPGEIREGFSRASFDGEI 621 Query: 633 PLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 + +A+ + RFL G V+ ++P+RS+PF+VVCLLG+NDG +PR P Sbjct: 622 SSRWMGRHIARMAESREGRDRFLTGGVSFGRMVPLRSLPFRVVCLLGLNDGEFPRVHHPP 681 Query: 693 GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 FD ++ +P+ GDRSRR+DDR LFLEAL+SA+Q L++SY+GR +D S + PSVL++E Sbjct: 682 SFDWLAARPRPGDRSRREDDRTLFLEALLSARQVLWLSYLGRESRDGSPKEPSVLLREFE 741 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY---QPGERQSYAREWLPA 809 D + + G ++ + P P +Y S++R W Sbjct: 742 DVVAEGFTGEG---------GEEIQKQILLEAPVDPLSPSHYGDSPDPRLHSFSRSWREV 792 Query: 810 ASQAGKA--------HSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 + + + P+P + L+ L+ F ++P R F RL + R + Sbjct: 793 LDASRNDGWKAPVFWDRDLLLPMPEPGAAGILLDDLRFFHSNPARFFLLRRLGFSSRARE 852 Query: 862 SEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC 921 ++PD EPF L L +++ D +R +P+ G + Sbjct: 853 IDLPDDEPFSLS-----------LREILKGLD-----QRSFEVDGIPWPPLGPLQLSEGI 896 Query: 922 QEMQQLADRV----IACRQPGQSMEIDLACNGVQITGWLPQV---QPDGLLRWR---PSL 971 + R+ +++EI L GV++ G L + G +R P Sbjct: 897 RHKGDHVGRIGRLLGLLSGEPEAVEISLELLGVRLVGRLSGILTKTEGGRVRVVDLWPGK 956 Query: 972 LSVAQGMQLWLEHLVYCASGGNGESRLFLR----KDGEWRFPPLAAEQALHYLSQLIEGY 1027 + + + +LEHLV C L + F P A L +E + Sbjct: 957 IYPSHQVTAYLEHLVACRGIPGYVGTLLCGVVPHNPEAFLFWPSPP--AEGGLESFVEAF 1014 Query: 1028 REGMSAPLLVLPESGGAWLKTCYDA--QNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEG 1085 + PL PE A+++ + ++++ ++A + A G Sbjct: 1015 QVAGERPLPFDPEISLAYIRKIRSKAAREVQEGEEETVGRQAAMRAWDAPAPPDRDEGLR 1074 Query: 1086 DDIWY-----QRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121 D +RL+ + R L PLFR Q Sbjct: 1075 DPRSLPTFWSRRLFAGRPLPLEPDFPSWAHRLLDPLFREQQ 1115 >UniRef50_A6W6P1 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W6P1_KINRD Length = 1158 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 271/1214 (22%), Positives = 462/1214 (38%), Gaps = 161/1214 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVER-ERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG---- 55 ML V+ S + L + ++ DPF P+++ V + G +W+ LS G Sbjct: 1 MLHVHRSESANTLVTALAGLLRDPAPGADPFAPDVLAVGARGTERWIAQRLSHHLGAGDP 60 Query: 56 --------IAANIDFPLPASFIWDMFVRVLPEI-----PKESAFNKQSMSWKLMTLLPQL 102 I A +D PA + + L + S++W ++ +L ++ Sbjct: 61 AAGGGDDGICARVDTSSPAHLLDGVLAAALERTRPGTGDAVERWAPSSLTWDVLEVLDEI 120 Query: 103 LE---------REDFTLLRHYLTDDSDKRKLFQLSSKAA-------------DLFDQYLV 140 R +F LLRH+L LF +Y Sbjct: 121 APADGGPAPDGRPEFALLRHHLRHHPGDDGPGGPGGPGTPPVRRTAAAARVAGLFARYGA 180 Query: 141 YRPDWLAQWETGHLVEG---LGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETL 197 RP LA W G L WQ +++A+ E A L L Sbjct: 181 ARPQLLADWAAGRDDAPGAPLPADLRWQPEVFRAVRERVGLPA-----PAELLDDACAAL 235 Query: 198 ESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYL 257 + L R+ + ++ L L+ L AL +H E+HLL +P W Sbjct: 236 RT-DPALSDLGPRLAVFLVTRLATSRLRVLSALAEHREVHLLLQHPSPALW--------- 285 Query: 258 AKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYI-YLLSD 316 ++ + +PLL S + R+ L Sbjct: 286 --------------DATAAALRTDPGPRRAAWAAHAPGRHPLLRSMARDVRELQVRLAHA 331 Query: 317 LESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITF 376 ++ LL +Q+ + ++ DP D S+ Sbjct: 332 APGHTDVHHPAPEPAPTLLGTLQAALA---------------RDAEPAPGPDPGDRSVQV 376 Query: 377 HVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG-SAPADRYL 435 H CH R+VEVL + +L +L+ DPTL PRD++V D+++++P + A F + L Sbjct: 377 HACHGRARQVEVLREVVLGLLDADPTLQPRDVLVACPDVETFAPLVSAAFATDSHPGGGL 436 Query: 436 PYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQ 495 ++DR A +++P+L + LL L SR + +VL L + RFD+ +E L LR+ Sbjct: 437 RVQVADRSALRTNPLLGLAVRLLGLAQSRAGATEVLDLAAAAPVRRRFDLDDEDLEQLRE 496 Query: 496 WVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES-----------AQGEW 544 W +G+ WG+ + +L + Q TWR GL R+L+G A+ G Sbjct: 497 WTVAAGVHWGLSARHRGAWQLGSLDQGTWRAGLDRLLVGVAVGGAVEDDLVGRTGEDGLL 556 Query: 545 QSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAE 604 +V+P + +L G A LL +L+ L + W D + E Sbjct: 557 GAVVPLADVESSRIDLAGRFAELLDRLDAAVTRLQGRHGVAAWCDTLLDAVLDLADTAPE 616 Query: 605 TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTL 664 + + ++ + + A V L+ + +++R F G + +CT Sbjct: 617 DAWQVAQLRRELGVVAHDAARA-GTARVGLTDVAATISERFAAHPQRANFRTGALTVCTP 675 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQ 724 P+R++P +VVCLLGM+DG +PR P D++++ P GDR R +DR + L+ + SA+ Sbjct: 676 APVRAVPHRVVCLLGMDDGAFPRAGGPDADDVLARDPHVGDRDPRGEDRQVLLDLVRSAR 735 Query: 725 QKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLH 784 L ++Y GR ++ + P+V V E++D + +H V+A + H Sbjct: 736 DALVVTYSGRDVRTGAVLPPAVPVGEVLDALEAAH--------------PGVRARIEVHH 781 Query: 785 TRMPFDPQNYQPGER-----QSYAREWLPAASQAGKAHSEF----VQPLPFTLPETVPLE 835 P D +N+ PG S+ A + + LP + L+ Sbjct: 782 PLQPTDRRNFTPGALGTDGPFSHDGTAFSGADAGHREPAPVPPFLPAALPPAPAADLDLD 841 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 TL +F HP R F + RL V T + E D P L+ L ++ + + L A + A Sbjct: 842 TLVQFLQHPARGFLRQRLDVASATREEEPDDALPVQLDALQKWAVGDRALAARLRGVAAP 901 Query: 896 RLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA-CRQPGQSMEIDLACN-----G 949 + R A G LP G G + +A P +S++++L + Sbjct: 902 EVVRLEGARGGLPPGPLGVAVLREVGPVVDAIAGVAAEFDTAPPRSVDVELDLDVPGVGQ 961 Query: 950 VQITGWLPQVQPDG---------LLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL 1000 +++TG + V+P + S + Q ++ W+E L A+ E R L Sbjct: 962 LRLTGNVRGVRPVRGGGRATGEVAVTTVYSRIKGKQTLRAWVELLALSAAHPGTEFRTVL 1021 Query: 1001 ------RKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQN 1054 G P+ ++ A L L+E G+ PL + ++ AW + + + Sbjct: 1022 VGRGDRGSTGLLTLGPVRSDAARDLLVDLLELRAVGLRFPLPLPVDTAAAWAQEAWRGR- 1080 Query: 1055 DAMLDDDSTLQKARTKFLQAY--------EGNMMVRGEGDDIWYQRLWRQLT---PETME 1103 D+ L+ AR + + E N+ V G + + W T P Sbjct: 1081 ----APDACLRAARRAWTSDFSFDKEDRQEENVTVWGAERPVEHLVRWEPPTTLPPGVPT 1136 Query: 1104 AIVEQSQRFLLPLF 1117 +R PL Sbjct: 1137 TFEGLVRRVWEPLL 1150 >UniRef50_A5GLW8 Exodeoxyribonuclease V gamma chain n=4 Tax=Synechococcus RepID=A5GLW8_SYNPW Length = 1105 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 260/1172 (22%), Positives = 443/1172 (37%), Gaps = 119/1172 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLR+Y SNR ++L L+ + PFE ++V + ++WL L+ GI+A + Sbjct: 1 MLRIYRSNRAELLAQLLAQELNLNPP-GPFEQVEVVVNTWPTSRWLGERLASFNGISALV 59 Query: 61 DFPLPASFIWDMFVRVL-PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD-- 117 FP P S + + VL E P E + + + W ++ +LPQL++ E+ LR + + Sbjct: 60 RFPFPGSRLRQLAQAVLSKEPPLEDPWRAERLVWTVIAVLPQLMQCEEAKPLRQWWNNQR 119 Query: 118 ---DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE 174 D+ R+ + L+ + AD D Y +YRP LA W G + L WQ L +AL E Sbjct: 120 TTSDALTREQWLLARQLADAVDDYALYRPQDLAGWLAGDDGDHLPAVLRWQPLLVRALAE 179 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 P Q+ ++ L S LP R+ + G+S L PV + LQAL + Sbjct: 180 RL-----PCEPFGLQVQQAVDQLRSGQAPATPLPKRLRLFGLSNLAPVQIDLLQALAAVM 234 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 ++ L PC W + DG Sbjct: 235 QVELYLLTPCPDLWERSAQRRRRL-----------------------GENWTASPDGTWL 271 Query: 295 VGNPLL-ASWGKLGRDYIYLLSD-----LESSQELDAFVDVTPDNLLHNIQSDILELENR 348 + P L A G++G ++ LL L S+ + D F D Q +LE R Sbjct: 272 IEAPKLEAILGRMGGEFQLLLEGSGDCLLSSTDQADLFADPVAMAASEGRQGSLLEQLQR 331 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 +A + D S+ F C P REV+++ D++L + +D TL PRDI Sbjct: 332 QLASSEHFPLQHT-------SADRSLLFMGCAGPWREVQLVRDQILHWMADDSTLQPRDI 384 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRY-LPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 +VM D++ Y+P + +V A LP+ ++DR + S + +AF++LL L R + Sbjct: 385 LVMTPDVERYAPLLASVLSDQDATGVDLPWRLTDRSQQNSPGLQQAFMTLLQLSAERLTA 444 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 + AL+ P + + + + SG RWG+D + H+ R+ Sbjct: 445 TGLEALMSNPAFLDLQGLEAQEAMDITAALQRSGFRWGLDREERH-----GDDTHSLRWC 499 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 L R L+G + G + L + + LL Q+ W L Q W Sbjct: 500 LDRWLIGLILPDEPGLALGSCA-PAVADLSLQQLERWWPLLDQIAQWIAQLRQSGSCTVW 558 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 + R +L+ F + + I+Q + + + + + +++ L + L Sbjct: 559 VERLRRLLSDLFGDGGAWDWELQAIQQGLETWLIQAGHCELN--LETTVVIAVLEEALSA 616 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 + +G + + L PMR+IP +V+ L+G++ +PR GF L+ ++ + GD S Sbjct: 617 DSGRFGHRSGAMTVSALEPMRAIPHRVIVLMGLDAASFPRTRERPGFHLLERQRRLGDPS 676 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 D DRY+ LEAL+S++Q L IS+ R + P VQ+ ++ + Q + Sbjct: 677 STDQDRYVLLEALLSSRQHLLISWSSRDERRGDALPPCPPVQQWLNLLRQELSEEAMAQV 736 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLP-- 825 + + A R AR+ L H+ LP Sbjct: 737 LIEPPANPLDAANFIPAKTHALSC-----DRRLLQARQCLDDPQGRAPGHAPLGLALPIH 791 Query: 826 -----------FTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 T + +E L+R+ P RA+ + R + + D P L Sbjct: 792 WPPEAPPPPAHATTLNSDQVEQLERWLQAPQRAWLRER-GIEAGEWCDAVEDRAPLALPE 850 Query: 875 LSRYQINQQLLNALVEQDDAE-----------RLFRRFRAAGDLPYGAFGEIFWETQCQE 923 + + + L +++ R + G LP GA G + Q Sbjct: 851 RTLRALITERLRDELDRLKTHPEARWDVTRSGEWIRWSQGRGLLPPGAGGALDDIRLEQR 910 Query: 924 MQQLADRVIACRQPGQSMEID-LACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWL 982 + L + + Q + LA + + G + S L ++ WL Sbjct: 911 WKNLQTTLFSLGSLQQPPRWERLATPPLPMAGETA-------VLISASKLQARSVLEGWL 963 Query: 983 EHLVYCASGGNGESRLFLRKDGE---------WRFPPLAAEQALHYLSQLIEGYREGMSA 1033 +HL+ +G + + R + R+ P+ ++QA LS L EG Sbjct: 964 KHLLNQRAGRAAPTVVICRGESSSKAETFSIAMRWLPMESQQADGLLSDLFALAEEGRRI 1023 Query: 1034 PLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRL 1093 + PESG A ++ A F + G + E + Q Sbjct: 1024 CWPIPPESGLARAVALAKGRDV-----------ADRAFSACWHGGIKRWAERERSDLQAC 1072 Query: 1094 WRQLTP----ETMEAIVEQSQRFLLPLFRFNQ 1121 + + PL + Sbjct: 1073 FGNGCDAERLLSSPGFDSAFDSLYAPLLEARR 1104 >UniRef50_Q3AJ30 Exodeoxyribonuclease V, gamma subunit n=5 Tax=Synechococcus RepID=Q3AJ30_SYNSC Length = 1081 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 270/1164 (23%), Positives = 438/1164 (37%), Gaps = 134/1164 (11%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML VY SNR + L L+ + ++ P E ++V + ++WL L+ GI++ + Sbjct: 1 MLTVYRSNRAEFLARLLSRQLIEQQP-GPLETVEVMVNTWPTSRWLGEQLATANGISSLV 59 Query: 61 DFPLPASFIWDMFVRVLPEIP-KESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTD-- 117 FP P S + + +VL ++ + + W ++ LLP+LLE+ LR +L Sbjct: 60 RFPFPGSRLRQLVRQVLHLPAQEDDPWRAGQLVWAVLELLPELLEQPVAQPLRVWLAQRE 119 Query: 118 ---DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVE 174 R +QL+ AD D Y +YRPD L QW+ + WQ LW+ L + Sbjct: 120 GTASGLTRDRWQLARSIADAMDDYALYRPDQLEQWKQPRPDDD------WQPVLWRLLAQ 173 Query: 175 YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHI 234 PR + +E L P LP R+ + GISAL PV + +QAL + Sbjct: 174 RL-----PRAPFGLQVREAVECLRRGDVDPALLPERLRLFGISALAPVQVDLIQALSGLL 228 Query: 235 EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQD 294 + + PC W L DG Sbjct: 229 AVEIYLLTPCPDLWQRCGSRRASL-----------------------GDEWLIPPDGGWL 265 Query: 295 VGNPLL-ASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDILELENR 348 P L A G++G ++ LL L +E D F ++Q E Sbjct: 266 AEAPRLEAVLGRMGAEFQQLLEGSGEAQLGERREGDLFA--------GSLQIAAAEERQP 317 Query: 349 AVAGVNIEEFSRSDNKRPLD--PLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 + ++ +++ L+ D S+ F P REV+++ DR+L L DP L PR Sbjct: 318 TLLDQLQQQLVDAESIAELNRSSDDQSLLFQAAPGPWREVQLVRDRILQWLAADPDLEPR 377 Query: 407 DIIVMVADIDSYSPFIQAVFGS-APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 D++VM I+ Y+P + +VF A LP+ ++DR + S + A +LL L +R Sbjct: 378 DVLVMTPQIERYAPLLSSVFNDTAAFGVDLPWRLTDRSQQSSPGLSMAMFTLLELAATRL 437 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWR 525 + + LL P L + +T E + Q + SG RWG+D H+ R Sbjct: 438 TATGLERLLANPALQGQQGLTPEEAVLITQTLQRSGFRWGLDARER-----GGDEVHSLR 492 Query: 526 FGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPL 584 + L R LLG + G P+ + L + + +LL ++ L + RP Sbjct: 493 WCLDRWLLGLVLPVEPGLAPAGAAPFQQ--ELDPDRLVRWWTLLDRVARMLDRLREPRPC 550 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQR 644 W+ + + +L F + + ++ + L + Sbjct: 551 HGWVELLQSLLQELFAEGGAWTDEAQSWAAALEEWRLRAHDCPLD--LDAAVALEVLQEA 608 Query: 645 LDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG 704 L + +G + I L PMR+IP KVV L+G++ +PR GF L+ Q+ + G Sbjct: 609 LSVDSGRFGHRSGALTISALEPMRAIPHKVVILMGLDSADFPRPSRRPGFHLLEQQRRLG 668 Query: 705 DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD 764 D D DRY+ LEAL+SA++ L IS+ GR + + P+ V++ + + + G Sbjct: 669 DPRSSDQDRYVLLEALMSARRHLLISWCGRLERTGEPQPPAAPVEQWLSVLQEQLQRAG- 727 Query: 765 EALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQP- 823 L P +N++P S R L A A + P Sbjct: 728 ----------ASTEGLLVTPAANPLSRENFRPEAPLSCDRRQLEARRCLDAAPASVPNPQ 777 Query: 824 ----LPFTLPE--------------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 PE + E L + P +A+ Q R + + Sbjct: 778 GLAWASLWQPEINDDEAEGRDGDDLALDPEALLAWLQQPQKAWLQAR-GLRPGEGIEAVE 836 Query: 866 DTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQ 925 D E LEGL RY + L A G LP GA + E Q Q Sbjct: 837 DLEALELEGLQRYLLLNHELEEQFILGSAPDWTASLAGQGVLPAGAGAALEQEELQQRWQ 896 Query: 926 QLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 L ++ + + + + LA + + D + +P +L+ A M+ WL+HL Sbjct: 897 ALQRQLASLGPCRREVPV-LAGLPMPLLY-----AGDTQVVVQPGMLTAAAVMRGWLQHL 950 Query: 986 VYCASGGNG--------ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 + CA G S + R+ L +A L QL R+G+ V Sbjct: 951 LLCAEGSAPAAGSAVVARSTRVAGAEVHVRWSVLPTVEAEDQLQQLARLARQGLERCWPV 1010 Query: 1038 LPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQ- 1096 P+SG + + D F + ++ EG Q + Sbjct: 1011 PPKSGWQMVAKERRKPGEGQQD-----------FRKTWQD------EGATPLMQLCFGSD 1053 Query: 1097 -LTPETMEA--IVEQSQRFLLPLF 1117 + M+ + Q PL Sbjct: 1054 VAAEQLMDQAGFQQACQLLYGPLM 1077 >UniRef50_Q05XZ7 Possible exodeoxyribonuclease V gamma chain n=1 Tax=Synechococcus sp. RS9916 RepID=Q05XZ7_9SYNE Length = 1078 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 256/1151 (22%), Positives = 430/1151 (37%), Gaps = 107/1151 (9%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWL--QMTLSQKFGIAA 58 ML +Y SNR +VL ++ + E ++V + ++WL Q+ L+ GI A Sbjct: 1 MLTLYRSNRSEVLADVLAANLSLHPP-GVLEEAQVVVNTWPTSRWLGEQLALANPSGITA 59 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKE---SAFNKQSMSWKLMTLLPQLLEREDFTLLRHYL 115 N+ FP P S + +L + + Q++ W L+ LLP+LL+ L+H+L Sbjct: 60 NLRFPFPTSLLRHTVDGLLEQQSSGGGADPWRAQNLVWPLLELLPELLDHPASAPLQHWL 119 Query: 116 TDDSD------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLW 169 L+QL+ AD D Y +YRP L W G + G + Sbjct: 120 NTRKSAALEVLDPPLWQLARAIADAIDDYSLYRPAMLEAWLKGQATDARGTPLSPTMLW- 178 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + + ++ I L+ + + G+S+L PV ++ LQA Sbjct: 179 QQQLMQQLHSRLGCLPFGMRARQLIRRLQEGWRPERPPQPPLRLFGLSSLAPVQVELLQA 238 Query: 230 LGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNS 289 L I L PC W QR+ S E + + Sbjct: 239 LSCLRSIELYLLTPCPELW---------------QRQSSIESQAPLDEEWLLTVPSVE-- 281 Query: 290 DGEQDVGNPLLASWGKLGRDYIYLLS-----DLESSQELDAFVDVTPDNLLHNIQSDILE 344 A +G+LG ++ LL L S + LD F + +LE Sbjct: 282 -----------ARFGRLGAEFQQLLEGSGETQLGSWRALDPFFFPATTASSQGKEPTLLE 330 Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 + + P D S+ FH C R+++VL D++L +L D +L Sbjct: 331 QLQEHLVHGTPTDLL------PRTEDDQSLQFHACPGRLRQLQVLRDQILQLLANDDSLE 384 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADR-YLPYAISDRRARQSHPVLEAFISLLSLPDS 463 PRDI+VM +++++P + AVFG A LP+ ++DR + + + + LL+L Sbjct: 385 PRDILVMTPQVEAFAPLVSAVFGDNDATGVRLPWRLTDRSQQSEAGISQGVLQLLALGGE 444 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 R + + +L L + + + Q + ++G RWG+D + H+ Sbjct: 445 RLTASALETVLANAPLLRAHQLEPDEAEDITQSLQQAGFRWGLDSRDR-----GGDPTHS 499 Query: 524 WRFGLTRMLLGYAMESAQGE-WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 + + R++LG G ++ P L + G LL QL + L+ R Sbjct: 500 LAWAIDRLVLGVVYPETPGLALENTAPMALPGSLEQQ--GRWLGLLRQLQRSLQWLSHSR 557 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 ++ W+ R L A F + + I + + ++ + LA Sbjct: 558 SVQAWVEGLRPQLMALFADGGDWAWELQTIHSVLTDWGEVAGNSSLE--LSAPVVGEVLA 615 Query: 643 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 +RL + +G + I L PMR+IP KV+ L+G++ G +PRQ GF LM Q+ Sbjct: 616 ERLSEGSGRFGHRSGALTISALEPMRAIPHKVLVLMGLDAGAFPRQRQRPGFHLMEQQRL 675 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 GD S D DRY+ LEAL+SA+Q L +S+ R + S V++ ID + Q Sbjct: 676 LGDPSSGDQDRYVLLEALLSARQHLLVSWSCRDERTGEPLEASTPVRQWIDLLPQVPVRE 735 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF-- 820 + +A +R R+ L A + G A F Sbjct: 736 HAANALERSNFLPSEAWPPA------------SCDQRLLQVRQHLDAGTIGGTAGLAFSI 783 Query: 821 -VQPLPFTLPETVPL-ETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRY 878 P + + L + P + + + L + R ++ + D E L+ R Sbjct: 784 TPHKSPDGPALPLSAWDDLISWVTAPQKQWLEQ-LGLRPREHENAVLDLEDLSLDERQRS 842 Query: 879 QINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG 938 + +Q L E++ R G LP + G + Q L+ + + + Sbjct: 843 ALLRQELGRDQEENAEPDWLALDRGRGQLPPHSAGALEAHQLEQRWTSLSTCLSSLGEER 902 Query: 939 QSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRL 998 + ++ Q L D L+ + Q QLWLE L+ A+G S + Sbjct: 903 RD---AVSMGPWQAELSLRD---DQLVLVHTARPRSPQRQQLWLELLLATAAGSKLRSAV 956 Query: 999 FLRKDGEW-----RFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQ 1053 + +DG R P +Q L Q + + PE+G A+ Sbjct: 957 LVGRDGHRFRVLERISPPTRDQCTALLDQHQAWREQYQQRCWPLPPETGWAFA------- 1009 Query: 1054 NDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWR---QLTPETMEAIVEQSQ 1110 K +K A+EGN ++ GE D Q + L + + Sbjct: 1010 ------VGEAKGKGWSKARDAWEGNAVLAGERLDAVQQLCFGSDLPLGDLLTDDAQALAL 1063 Query: 1111 RFLLPLFRFNQ 1121 PL Q Sbjct: 1064 TLHGPLLERRQ 1074 >UniRef50_A3ETY6 Putative exodeoxyribonuclease V, gamma subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY6_9BACT Length = 1095 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 254/1177 (21%), Positives = 450/1177 (38%), Gaps = 152/1177 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML ++ SNR++ L + ++ + P+ P IL Q+ + +WL L+ G+A NI Sbjct: 1 MLVLHVSNRMERLTDQLFSVIRDDPPP-PWSPVTILPQNPTIGRWLTYRLADVQGVAMNI 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 PLP ++I D + F + ++ +L+ +LP L + F+ RHYL + Sbjct: 60 ATPLPGAWIRDFLETGFGRSGQVVHFERNALFLRLLRILPALRDDPVFSEFRHYLGEGDP 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 R+L LS + ++LFD+ ++YRP+WL WE E +W A LW+ + H Sbjct: 120 SRRLVSLSDELSELFDRAMLYRPEWLTSWED------FPEDLSWPAVLWRNVAGKDH--- 170 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK--HIEIHL 238 H A L F + LP R+F+ G+S + P L +G+ ++H Sbjct: 171 --PAHFARLLHEFHSLPVLDSLWQEALPDRLFLFGLSGIAPATLDIFFRIGRETSCQVHF 228 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 F NP YW D+ + + D G+P Sbjct: 229 FFLNPTDRYWADMVSLRSWEHMEEELKP-------------------------YFDPGHP 263 Query: 299 LLASWGKLGRDYIYLLSDLESSQE-----LDAFVDVTPDNLLHNIQSDILELENRAVAGV 353 LLA G+ RD L + ++ + F + L +Q + ++ A Sbjct: 264 LLAFLGRTARDLHKKLEEGIRPEDPVADIRECFEEPEGTTTLSRLQRSLFRMDAAAEFLE 323 Query: 354 NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA 413 + P D S+ S REVE L D LL P L D++++ Sbjct: 324 RL-------------PDDGSLRIVSSPSVVREVETLRDFLLDRFLAQPDLRLEDVVILAP 370 Query: 414 DIDSYSPFIQAVFGSAP-----ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 + + Y+ I+AVF + + L +SDR ++ + + + LL LP Sbjct: 371 ETELYAGTIRAVFEATGESGRAGEPVLSVTVSDRPPFEA-ALADVLVGLLRLPVFPLTLS 429 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 V LL + RF + + L + + +G RWG+D + HT + + Sbjct: 430 FVQRLLSFQTVLDRFSLDRKMASELLEALARAGFRWGVDKQDRTR---DEPEDHTLDWAV 486 Query: 529 TRMLLGYAME-SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 +R+L GY QG V P+ E G L LL WR L+ L W Sbjct: 487 SRILEGYCTGIEEQGLVFPVSPFVLPDDPQGEKAGILFRLLDLFRSWRDRLSGRHALSAW 546 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 +L+ FF+ D + + + + Q + + + + + ++ + L++R+ + Sbjct: 547 AESVSALLSDFFVLDPDRDRDLFALGQSLRELCRDIHDV---EDMDCMMVTEMLSRRIFR 603 Query: 648 ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS 707 RF +G + ++P+RSIPF++VCLLGM + +PR FD + + P+ DRS Sbjct: 604 TTWRDRFFSGGITFGRMVPLRSIPFRIVCLLGMGESAFPRNDVAQSFDFLRESPRPLDRS 663 Query: 708 RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL 767 R+DD +LFLE L+SA+ L+ISY+G D + PS V++L++ + + Sbjct: 664 VREDDLHLFLEILLSARSSLWISYVGGEGGDGTTGLPSPPVRQLLETLREPFPPEKKG-- 721 Query: 768 NCDESEARVKAHLTCLHTRMPFDPQNY--QPGERQSYAREW----LPAASQAGKAHSEFV 821 L PFDP + + G S++ +++ + S FV Sbjct: 722 ----------QGLFREVPSDPFDPSCFSREAGSWGSFSSSRAGIVRSRSTRTDSSPSFFV 771 Query: 822 QP-----LPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFI 871 LP + + L LQ F+ +P + L + E + D EPF+ Sbjct: 772 PKKGRLVLPKGPEDRGSGRRISLSRLQSFYRNPPFYQAKNVLNLAVAGERPLLLDEEPFL 831 Query: 872 LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV 931 L+ + P+ G + E Q ++ ++ +R+ Sbjct: 832 LDP-----------------------SQEMADPAQNPWPPVGPLQREQQTRKRRERRERL 868 Query: 932 IACRQPGQ-----SMEIDLACNGVQITGWLPQVQPDGLLRWR--PSLLSVAQGMQLWLEH 984 + + Q + L G + G L + GL+ P L ++++L H Sbjct: 869 LGGFEGLQEDHTETRRFSLGIGGSLLFGTLSLYRETGLIVQDPFPWALRPPDLLRVFLAH 928 Query: 985 LVYCASGGNGESRLFLRKDGEWR---------FPPLAAEQALHYLSQLIEGYREGMSAPL 1035 L + + L ++ E+A L + YR + Sbjct: 929 LAGSLAFSFYRGTVLLNLAKDFPRTDSTDRPVLWSSEPEEATRLLRPYLVLYRRFRTRTF 988 Query: 1036 LVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQ------------AYEGNMMVRG 1083 +P A+ Q D + A+T + Q +++ Sbjct: 989 PFVPAVSLAYALE-QRNQRGRGPDPRKAIAAAQTAWRQLDPWRTDHGQKNSWKSPFRKDP 1047 Query: 1084 EGDDIWYQRLWRQLTPETMEA--IVEQSQRFLLPLFR 1118 + +Y L+ + ++ +Q+ P+ Sbjct: 1048 RRREGFYPHLFFDPEGDWIKDPFFGLLAQKLWNPILD 1084 >UniRef50_B2I2P5 Exonuclease V gamma subunit n=14 Tax=Acinetobacter RepID=B2I2P5_ACIBC Length = 1211 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 252/1133 (22%), Positives = 459/1133 (40%), Gaps = 127/1133 (11%) Query: 2 LRVYHSNRLDVLEA--LMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 + V S R+DVL L + + +V S + QWL L+++ G++AN Sbjct: 3 IHVIQSQRIDVLLQGVLASTSQPSTHPLQVLKAQHFIVPSPAIEQWLIQKLAEQQGMSAN 62 Query: 60 IDFPLPAS-FIWDMFVRVL---PEIPKESAFNKQSMSWKLMTLLPQLLE---------RE 106 F F W + +VL E +++ + W++ L + ++ Sbjct: 63 YQFHQRVRGFQWYAYQQVLTAHKEQVRKANIPRLIFKWRVHQALQEFIQPDVMSIDSSHP 122 Query: 107 DFTLLRHYLTDDSD------------KRKLFQLSSKAADLFDQYLVYRPD---------- 144 ++++ + D +D ++ L+ ++ + ADLF Y+VYR Sbjct: 123 LHSIVQR-IYDSADRLEQGIEKQLKKQKMLYWVAEQVADLFSNYMVYRGQCQRGCENMCT 181 Query: 145 ----WLAQWETGHLVE------------------GLGEAQAWQAPLWKALVEYTHQLGQP 182 WLA W G ++ E + WQ LW+ ++ H+ Sbjct: 182 CPNNWLAAWGQGRSLDIEKYIAHKDKEVSAFTLQQTQELERWQRWLWQ---QHFHEDFMQ 238 Query: 183 RWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTN 242 L+ + +E E LP ++ I + LPP LQ L+ LG++I++ +L N Sbjct: 239 MQQIDELFWQELEHPERQKKALSRLPQQIVIFTLLDLPPSQLQFLRRLGQYIDVLILHYN 298 Query: 243 PCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLF---RDSENAGQLFNSDGEQDVGNPL 299 P + YW D DP + + + D N L + ++ +PL Sbjct: 299 PSQEYWADSVDPLWKQRYDLGVKERFIAKNPQATDAEIADFFNKFTLNFNAEARESRHPL 358 Query: 300 LASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 L GK RD+ LLS+L + +E +DAFVD P++LL +QSDIL L + Sbjct: 359 LTRLGKQARDHFSLLSNLSTGEEGKWVDAFVDDFPESLLGKVQSDILHLVEPQAKQYELA 418 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE--DPTLTPRDIIVMVAD 414 P D SI HVCHS R++EVL ++L+ L + + P DI+V+V + Sbjct: 419 ------------PNDDSIQIHVCHSTLRQLEVLKEQLIGWLAKPHEQPRRPNDILVLVPN 466 Query: 415 IDSYSPFIQAVFGSAPADR--YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLA 472 + P I++VF + ++ +LP I+ + + A I + L RF ++ Sbjct: 467 LAEVEPLIRSVFPATATEQGVHLPVKIAGIASLDALNAWRAVIGRIHLMQGRFSFDEFAD 526 Query: 473 LLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG--QHTWRFGLTR 530 L + R+ + + + + ++G + G+D ++++ +++++F L R Sbjct: 527 WLGLHATQQRYALEYAQVERILNLLADAGFKRGLDAEHLKRSLCDGDDDYRYSFKFALER 586 Query: 531 MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL-----AQERPLE 585 + LG A+ + VL Y + EL+G L + LN R L + +E Sbjct: 587 LALGIAIPEHAT-FNQVLSYAKVQPGDFELIGTLIQIYQDLNERRDWLIMHEQKKSHTVE 645 Query: 586 EWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD-------AVPLSLLR 638 WL + F I ++ + ++ + +PL + Sbjct: 646 YWLQTLSQDIIEFEQAGVTALKTAREIVKKQERMLTLASYYAETETGTLRKITLPLPYIL 705 Query: 639 DELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM- 697 DE+ + L+ + +Q G + + +R +P++++ +L ++ G +P + + FDLM Sbjct: 706 DEIQRTLENQT-AQAEPTGQITFAQIGQIRPLPYRLIVMLNLDAGQFPNRDTHVPFDLMD 764 Query: 698 SQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ 757 + + + GDRSR +DD+ FL+AL+ AQ+ L++ Y G + D R PS ++QE +++ Sbjct: 765 ALRQQLGDRSRLEDDQGAFLDALLLAQENLWLFYNGFDVNDGEVRDPSSILQEFREHLAL 824 Query: 758 SHYLPGDEALNCDESEARV---KAHLTCLHTRMPFDPQNYQPGERQ-SYAREWLPAASQA 813 + + L LH PFDP+ + R Y W A Q Sbjct: 825 IVKPEPNAPDREVIEGIEIPTQLKQLYHLHYLQPFDPKGFMAENRYIRYQDHWFNVAMQI 884 Query: 814 GKAHSEFVQ----PLPFTLPETVPLE--TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 +A P +P+ + L+ + P R + + L V S + Sbjct: 885 QQASGVLKPWANISYPLEIPDMLVLDSHQWIQDVTFPARLYLK-TLGVENLGNVSVLDQN 943 Query: 868 EPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQL 927 EP +L+GL RY I L +Q E L + LP G W+ E + L Sbjct: 944 EPLLLDGLGRYTIRH-FLQQNEQQAQPEVLLDQ------LPVGKVQYSAWQQGIFEQECL 996 Query: 928 ADRVIACRQP--GQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL 985 +R+ + + + + +P+ + + S + ++WLE+L Sbjct: 997 LERLHHYAPAVTQTTQRVWRIAKQLHMNITVPKSETQDWVSMEASSARAKRRAKVWLEYL 1056 Query: 986 VYCA-----SGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSA 1033 ++ A S G R+ + D +++EQA YL + +R Sbjct: 1057 LWLAYLNEGSAGTERRRIVVFSDQTVICKGISSEQARQYLQPWFKIWRYAQQQ 1109 >UniRef50_Q6FF17 Exonuclease V, gamma chain n=3 Tax=Acinetobacter RepID=Q6FF17_ACIAD Length = 1221 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 263/1241 (21%), Positives = 496/1241 (39%), Gaps = 149/1241 (12%) Query: 2 LRVYHSNRLDVLEALMEFIVER--ERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 + V S R+DVL + V + + D + +V S + QWL LS+ GI AN Sbjct: 3 IHVIQSQRIDVLLQGVWQSVHQPTRQPFDVLATQHFIVPSPAVEQWLTEKLSELQGITAN 62 Query: 60 IDFPL-PASFIWDMFVRVLPEIPKE---SAFNKQSMSWKLMTLLPQLL---------ERE 106 F F W + +VL E + + + + W++ L + + Sbjct: 63 YLFHQRIRGFQWYAYQQVLSEHKDDVRKANIPRLILKWRVYQALYDFIQPDQILITQDHP 122 Query: 107 DFTLLRHYLTDDSD------------KRKLFQLSSKAADLFDQYLVYRPD---------- 144 ++++ + D +D ++ L+ ++ + + LF Y++YR Sbjct: 123 AYSIIAR-IYDSADRLENGFEKQLKKQKMLYWVAEQVSQLFSNYMIYRGHCQKNCAGNCG 181 Query: 145 ----WLAQWETGHLVE------------------GLGEAQAWQAPLWKALVEYTHQLGQP 182 WL+ W ++ E +AWQ LW Y HQ Sbjct: 182 CASNWLSAWGENRELDIEQLIVQGNKEISAFQLQQAQELEAWQRWLWHR---YFHQDFLD 238 Query: 183 RWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTN 242 + +L+ + +E ++ LP ++ + + LPP LQ L+ LG+++++ +L N Sbjct: 239 IQNIDDLFWQVLEQPQTRDIALKRLPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILHYN 298 Query: 243 PCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ---LFNSDGEQDVGNPL 299 P + YW D DP + + R ++ E D + L + ++ +PL Sbjct: 299 PSQEYWADSVDPLWKQRYDVRVKQRFIEKNPAATDVDIAQFFEQFTLHFNAEARESRHPL 358 Query: 300 LASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDILELENRAVAGVNIE 356 L GK RD+ LL++L + +E +DAFVD PD LL +QSDIL L Sbjct: 359 LTRLGKQARDHFSLLANLSTGEEGRWVDAFVDDFPDTLLGQVQSDILNLAEPQA------ 412 Query: 357 EFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT---LTPRDIIVMVA 413 + L+P D SI FHVCHS R++EVL D+L+ L ++ P DI+V+V Sbjct: 413 ------GRYTLEPSDESIRFHVCHSSLRQLEVLRDQLIHWLSQNDDASVRRPNDILVVVP 466 Query: 414 DIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVL 471 +I P I++VF + P+D +LP IS A + ++L R +D Sbjct: 467 NIKEIEPLIRSVFPATPSDDGVFLPIKISGVVQLDVMNAWRAVLGRMTLLQGRLSYDDFA 526 Query: 472 ALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL--PATGQHTWRFGLT 529 L +P +D+ + ++ + + +G + G D ++++ +++++F L Sbjct: 527 DWLSLPATQVCYDLEDSQIKRMLALLAGAGFKRGFDIHHLQQSLSAEDHDDRYSFKFALD 586 Query: 530 RMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL-----AQERPL 584 R+ LG A+ +Q VL Y + EL+G L + ++ R + + + Sbjct: 587 RLALGIAIP-EHTLFQGVLSYSGVTPDDFELIGKLIQIYQDIDARRNWVLAHEQGTQHSV 645 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII-------AEGLGAQYGDAVPLSLL 637 E+WL + + F I ++ + ++ + A+PL + Sbjct: 646 EDWLKILMQDVIEFEQAGVVALKTAREIIKKQERMVTLASFYADKDAHTLRQIALPLPYI 705 Query: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 DE+ + L+ + +Q G + + +R +P+++V +L ++ G +P + + + FDLM Sbjct: 706 LDEIQRTLEHQS-AQAEPTGQITFSQIGQIRPLPYRLVVMLNLDTGRFPNRDSHIPFDLM 764 Query: 698 -SQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 + + + GDRSR +DD+ FL+A++ AQQ L++ Y G + D R PS ++QE D++ Sbjct: 765 DALRQQLGDRSRLEDDQGAFLDAVLLAQQALWLFYNGFDLNDGEVREPSSILQEFRDHLA 824 Query: 757 QSHYLPGDEALNCDESEARVKAH--------------LTCLHTRMPFDPQNYQPGERQ-S 801 A + D + L C+H PFDP + Sbjct: 825 LIVAPAEQIAKHEDSNLTIQMQQQQFKLLDIPNQLWPLYCVHPLQPFDPLGFGNLPVAKR 884 Query: 802 YAREWLPAASQAGKAHSEFVQPL------PFTLPETVPLETLQRFWAHPVRAFFQMRLQV 855 Y +W A +A + + P + + P R + + L V Sbjct: 885 YQDQWYQVAQSIQEASAILQPWVNMVYTQPQQELRVLDSQQWMADVTFPARLYLKN-LGV 943 Query: 856 NFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEI 915 + + EP L+GL RY I L + + L + LP G Sbjct: 944 ENLAMTTLLDQNEPLFLDGLGRYAIRN-FLQKQEQTTTPDTLLDQ------LPVGKIKHS 996 Query: 916 FWETQCQEMQQLADRVIACRQPG--QSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLS 973 W+ E ++L +R+ + + + + +P+ + S Sbjct: 997 AWQQSLAEQERLLERLHHYTTQPTATTHHVWRVSKTLHLNIIMPEHDVQDWVSLEASSAR 1056 Query: 974 VAQGMQLWLEHLVYCAS-----GGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYR 1028 + ++WLE+L++ + G R+ + D +++ QA YL+Q ++ ++ Sbjct: 1057 AKRIAKVWLEYLLWLSYLNEGDAGQRRRRIVVFSDQTVICEGVSSIQARDYLTQWLKMWQ 1116 Query: 1029 EGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMV----RGE 1084 + P+++ L+ D ++K L+ ++ + Sbjct: 1117 VASTQPVVLPAALILQPLEKAKQYHWVQQSDQFQLVEKDLLNILKEWQDPKAYMQIDTSQ 1176 Query: 1085 GDDIWYQRLW------RQLTPETMEAIVEQSQRFLLPLFRF 1119 + Y W + T +A+ S P+F++ Sbjct: 1177 LESSQYHLDWSFILQQQDATALLKDALQRYSYDLYAPIFQY 1217 >UniRef50_D0SSR5 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SSR5_ACILW Length = 1234 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 282/1259 (22%), Positives = 492/1259 (39%), Gaps = 169/1259 (13%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFE---PEMILVQSTGMAQWLQMTLSQKFGIAA 58 + V S R+DVL M IV + +PFE +V S + WL +++K GI+A Sbjct: 3 IHVIQSQRIDVLLDSMLRIVNQT-ARNPFEVLQTRHFIVPSPAVETWLTQKIAEKKGISA 61 Query: 59 NIDFPL-PASFIWDMFVRVLP-----EIPKESAFNKQSMSWKLMTLLPQLL--------- 103 N F +F W + VL E +E+ + + W++ L + + Sbjct: 62 NTQFHHRIRAFQWTSYQWVLNAPKEVEQVREANIPRIIIKWRVFQALRKCILPEQIPLDV 121 Query: 104 EREDFTLLRHYLTDDSD------------KRKLFQLSSKAADLFDQYLVYR--------- 142 + +++++ + D +D + L+ ++ + + LF Y+ YR Sbjct: 122 DHPLYSIVKR-IYDSADRLEQGTEKQLKKQSMLYWVAEQVSRLFSHYMDYRGYCARNCPP 180 Query: 143 ------PDWLAQWETGHLVE------------------------GLGEAQAWQAPLWKAL 172 +WL W ++ E +AWQ LW+ + Sbjct: 181 NNCSCPSNWLEAWGQDIALDIEQMIYSPKDENGHEMQVADFVKIQARELEAWQRWLWQHV 240 Query: 173 VEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGK 232 + LY +E E+ LP+++ + + LPP L L+ L + Sbjct: 241 FQD---DYAKILEIERLYWDRLENAETRAQALKRLPAQIVVFSLLELPPSQLDFLRRLSQ 297 Query: 233 HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG-------Q 285 +I+I++ NP + YW D DP + A+ ++ + E R +A Q Sbjct: 298 YIDIYIFHFNPSQEYWADSVDPDWKARFDLQREERFIQRFEKTRQRKPNDAEIKDFRIKQ 357 Query: 286 LFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---LDAFVDVTPDNLLHNIQSDI 342 L + +++ +PLL +GK RD+ LLS L S +E D FVD D LL IQSDI Sbjct: 358 LNFNAEDRESRHPLLTRFGKQARDHFSLLSKLSSGEEGLWADVFVDEYQDRLLAKIQSDI 417 Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP- 401 L L ++ L P D S+ HVCHS R++EVL ++L+ L + Sbjct: 418 LYL------------LEPEQHQYALSPDDDSVQIHVCHSSLRQLEVLKEQLIHWLAQGNE 465 Query: 402 --TLTPRDIIVMVADIDSYSPFIQAVFGSAPADR------------YLPYAISDRRARQS 447 P DI+V+ + P I++VF P +R YLP I+ Sbjct: 466 EAPRQPSDILVLTPSLKELEPAIRSVFAPPPRERETGSKRLQKDNLYLPIQIAGVSRLDV 525 Query: 448 HPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGID 507 A + + RF ED L + R+ + + + Q + ++G + G+D Sbjct: 526 SNAWRAVLGRIQWVRRRFSIEDFADWLSLNATQQRYGLDYSQVERMLQLLTDAGFKRGLD 585 Query: 508 DDNVRELELPATG--QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA 565 ++++ + +++F L R+ LG A+ +Q L Y + L+ L Sbjct: 586 QQHLQQSLSAGDEDYRFSFKFALDRLALGLAIP-EHTLFQDTLSYAKVLTSDFPLISTLI 644 Query: 566 SLLMQLNIWRRGL-----AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII 620 + L R L Q P++ WL R LN F E+ + I + ++ Sbjct: 645 RIYQDLVERRDWLTLHETGQRTPVKTWLEYLRADLNEFRDAGVESLKTVAEIIDKQMRML 704 Query: 621 AEGLGAQYGDA----------VPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSI 670 D +PL + +E+ L+ ++ Q G + + +R + Sbjct: 705 TLADYHDQDDPHASQELVALSLPLPYVLEEIQNTLE-MQLDQAEPTGQITFSQIGQIRPL 763 Query: 671 PFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRYLFLEALISAQQKLYI 729 P+K+V +L ++ G +P + + FDLM S KP+ GDRSR DD++ FL+AL+ AQ+ L++ Sbjct: 764 PYKLVVMLNLDSGKFPSRNQQVPFDLMRSLKPQLGDRSRLDDEQGAFLDALLLAQENLWL 823 Query: 730 SYIGRSIQDNSERFPSVLVQELIDYIG---QSHYLPGDEALNCDESEARVKAH---LTCL 783 Y G ++D R PS +QEL+ +I QS + D V H L + Sbjct: 824 FYNGFDLEDGEARDPSTALQELVQHIALICQSEQPDAEIDPMVDIHGLSVAQHIRQLYHV 883 Query: 784 HTRMPFDPQNYQPGERQSYAREWLPAAS----QAGKAHSEFVQPLPFTLPETVPL---ET 836 H PFDP + + Y +W A GK S P + + + + Sbjct: 884 HPLQPFDPAGFADMQTPRYQDQWFAVAEYIRSAEGKRSSWINAHYPALEQKEIRVLKGDE 943 Query: 837 LQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER 896 R P R F + V+ EP +L L +YQ+ LL E + Sbjct: 944 WIRDMIFPARLFLKSV-GVSTIRYADLPSSREPLLLNKLEQYQVRDFLLQQEQEIEPNLM 1002 Query: 897 LFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLA--CNGVQITG 954 L R LP G + W QE Q L +R++ + + + I Sbjct: 1003 LDR-------LPVGKTQQATWLGSQQEQQLLQERLLQLGKELTPVTQQSWQFSPELIIHI 1055 Query: 955 WLPQVQPDG-LLRWRPSLLSVAQGMQLWLEHLVYCA-----SGGNGESRLFLRKDGEWRF 1008 +PQV L + S S + Q+WLE+L++ A + R+ + + +F Sbjct: 1056 NVPQVPNSSYWLSMQSSSASEKRRAQIWLEYLLWLAYLNDDARSPELERIVIFSNKTLKF 1115 Query: 1009 PPLAAEQALHYLSQLIEGYREGMSAPLLVLP----ESGGAWLKTCYDAQNDAMLDDDSTL 1064 L++ +A YL ++ + G PL++ + W + + + + L Sbjct: 1116 SGLSSSKAHEYLQLWLKAWEIGQQQPLVLPAELLMKKEWQWAENEHGK---MTIVEMPEL 1172 Query: 1065 QKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETM--EAIVEQSQRFLLPLFRFNQ 1121 KA ++ + +Q + + P+ + + P+ + + Sbjct: 1173 LKAWNNSYESAKPLASDESSLLHQDWQFILQDQDPDLALQNCCHDFAHGLYAPIHQHLE 1231 >UniRef50_A5GU99 Exodeoxyribonuclease V gamma chain n=1 Tax=Synechococcus sp. RCC307 RepID=A5GU99_SYNR3 Length = 1071 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 262/1158 (22%), Positives = 446/1158 (38%), Gaps = 140/1158 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 MLR+ SN ++ L + ++R + +P P+ +L+ + M++WL + LS++ GI A I Sbjct: 1 MLRLISSNSIEDLATALASELDRHKPANPLTPQRVLISTNAMSRWLALALSERIGICAGI 60 Query: 61 DFPLPASFIWDMFVRVLPEIPK--ESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 +F + + + + +P ++ + W+L L+P L + E + L+ Sbjct: 61 EFDFAGRHLRQLILELDGRLPAGHRDPWDPSQLRWQLAQLIPALPQTELWEPLQQLWHQG 120 Query: 119 SDKR------KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVE----GLGEAQAWQAPL 168 ++ + QL + +D DQY +YRP + +W G V+ L Q WQ L Sbjct: 121 PQQQDNGLDTQRLQLILQLSDTLDQYGLYRPQMVRRWLNGESVDGSHAPLAAHQQWQPAL 180 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQAL- 227 + L + G P H A +E + L + G+S+LPP + L Sbjct: 181 LRELAQRLEPSGIP--HPAERLLHALEQSRQRSDPHEPL----HVFGLSSLPPALWKLLA 234 Query: 228 -QALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 +A + + L +P WG LP E Sbjct: 235 QRASSRDSPVLLYQLSPSLDPWG-----------------------SLPPSHHEEGDALD 271 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLS-------DLESSQELDAFVDVTPDNLLHNIQ 339 G+PLLAS G+ RD+ + L + Q+ A + LL ++ Sbjct: 272 RLERRLLHQGHPLLASLGRTQRDFHWQLELIAADLQEQFERQQRPAPLCPEEAGLLQQLK 331 Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 +D+L R IE L ++ CH +R+VE H+ LL ++ Sbjct: 332 ADLLVGRPRGEGLPGIEP------PLKLQRNQLNLEVLACHGDRRQVEAAHEALLRLMAG 385 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAP---ADRYLPYAISDRRARQSHPVLEAFIS 456 DP++ PR I+VM D+ ++P + AVF R+LP ++DR RQ +P ++ Sbjct: 386 DPSIEPRHILVMTPDVARFTPLVLAVFERPGRSSDPRHLPVRVTDRTLRQRNPRVDLVFR 445 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 LL+L SR +DVL +L +P LA ++ R+ ++++GI WG D D+ + Sbjct: 446 LLALASSRLSRDDVLDVLLLPELAEHLELGGLTQPQWRELLDQAGICWGRDGDHRQSWGY 505 Query: 517 PATGQHTWRFGLTRMLLGYAMES-------AQGEWQSVLPYDESSGLIAELVGHLASLLM 569 PA +WR+GL R+LLG + A GEW + ++S +++ L Sbjct: 506 PAGDAFSWRWGLDRLLLGLELSDGFPEQEAASGEWGGLAACNQSLATANDVL-ALHDACS 564 Query: 570 QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYG 629 +L + L+ P E W + D E + + + G Sbjct: 565 RLFEQLQALSGPLPAERWNEQIGSAIQQLSGGDDEG-WQAPEVYELLTPLRD---PEASG 620 Query: 630 DAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 A+ + + L + Q++ ++G V++ L PMRSIP +VV LLGM++ PR+ Sbjct: 621 LALDRAAVVRLLEEAEAQQQGRYGHVSGAVSLSALEPMRSIPHRVVVLLGMDEQRLPRRD 680 Query: 690 APLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 G+DLM Q+P RGDR RR +DR + LEAL + +Y + ER P+ + Sbjct: 681 QRPGYDLMLQRPWRGDRDRRQEDRAILLEALQACSDHWIATYNAIDPRSGEERNPAAPLS 740 Query: 750 ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPA 809 +L+ + +S+ E + + + Sbjct: 741 DLLRCLERSYRTEAGEPITTWVLQQQPPLPPLT--------------------------- 773 Query: 810 ASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 A + A Q P E LE LQ++ P RA Q ++ E D E Sbjct: 774 AREVVGAPWPMDQRWPVDECEPASLEELQQWLRDPARALLQAH-GIHPHRRGDESSDPEE 832 Query: 870 FILEGLSRYQINQQLLNALVEQDDAERLFRR---FRAAGDLPYGAFGEIFWETQCQEMQQ 926 +GL R+ + Q+LLN E+ +A + ++ G LP G + + Q Sbjct: 833 SAPDGLQRWTLGQRLLNLGSERLEANQWPQQRDALARRGHLPPGPAAIVSSDQPWQRCHA 892 Query: 927 LADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLV 986 L + L + ++ S + + WLEHL Sbjct: 893 LLAK----------------------QAELQDADGEAVVLMSNSRFKPKRLLDGWLEHL- 929 Query: 987 YCASGGNGESRLFLR--------KDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVL 1038 A+ + L L + W P + A+QA ++ + E + P+ + Sbjct: 930 -WANAERPQQTLLLGPMEQKGEERAAVWTLPAVEAQQAKAWIDDWQQWREEALQRPIAWI 988 Query: 1039 PESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLT 1098 PE L D + + + + G+ Sbjct: 989 PELNWQLLSQQQDGSLPGLSAQQLKELNPPGRNDYEWPSAWLQLLGGEAPSIASWLEHPE 1048 Query: 1099 PETMEAIVEQSQRFLLPL 1116 E + S R+LLPL Sbjct: 1049 AE------QLSLRWLLPL 1060 >UniRef50_D1R7X4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X4_9CHLA Length = 1144 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 257/1212 (21%), Positives = 464/1212 (38%), Gaps = 182/1212 (15%) Query: 3 RVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDF 62 V+ SN++++L ++ + PF +I+V S M W+ ++++ GIA + Sbjct: 8 HVFFSNQVELLIHPLKQQLL---GAHPFCRRLIIVPSPAMKSWVMFKMAEESGIAMGFET 64 Query: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLERED---------FTLLRH 113 I ++ + P + + ++ L + Q+L R + + L Sbjct: 65 IYLDQGIQRLYQLIEPNQTLANHPSSFELTLALEVEVRQILMRCESLSSEEHELWKPLFG 124 Query: 114 YLTDDSD--------KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQ 165 YL +++L L K A LF +Y + + L W +WQ Sbjct: 125 YLRFSPSIKTLSLKGEKRLISLVEKLAGLFLEYGIAGGEALEAWRQ-------APPSSWQ 177 Query: 166 APLWKALVE----YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPP 221 LWK + E Y ++ ++ ++ I+ L+ V + +S LP Sbjct: 178 VYLWKKIFERGNAYNWTYPYHYLNQISIPEKRIDQLQ------------VHLFAMSYLPA 225 Query: 222 VYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSE 281 +Y LQ + + I + +PC +W D ++ ++ + + Sbjct: 226 LYHNFLQKIAQAISVSFYLLSPCEAFWSDACSDKESKRMQRYWKKQDAPEAQQVAL---- 281 Query: 282 NAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLE-----------SSQELDAFVD-V 329 + NPLLA++G+LGR+ + D + + + + + Sbjct: 282 --------EELLRDKNPLLANFGRLGREMAVAVEDSNVRTSACYTLPARALDFPCYEESI 333 Query: 330 TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD--PLDSSITFHVCHSPQREVE 387 T D LLH+ SD L ++ F D+ PLD DS+I H S REV+ Sbjct: 334 TSDILLHS--SDRPYLTLLQAVQTDMVLFRNPDHTPPLDLSENDSTIQIHATPSLLREVQ 391 Query: 388 VLHDRLLAMLEEDP---TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 +LHD L+ ++ P L+P + +VM DI Y+PFI+ VF + + L Y + D Sbjct: 392 ILHDNLIRLIHNAPKENPLSPNEWVVMAPDIRIYAPFIKMVFSNPNSP--LDYKMMDAEL 449 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 + + +++F+ LL L SR+ + +L L D ++ + E + +R W+ E+GIRW Sbjct: 450 PEQNLYIQSFLHLLKLSSSRWDTVSLLTLFDYLPFRNKWGLHFEDIDQIRTWIKETGIRW 509 Query: 505 GIDDDNVR---------ELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSG 555 G+D + + + TW G +L G +E Sbjct: 510 GMDIAHRQMILKQDHCAHTLVDENPAGTWEHGFQMLLKGLILEENDTILS-------VDI 562 Query: 556 LIAELVGHLASLLMQLNIWRRGLA--QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIE 613 + L+G ++ L+ L ER ++EW + + N + LP+ + +E Sbjct: 563 TQSTLLGKWIYIVRSLHQDLIPLNDGSERTIQEWGTYLQHLSNFYLLPELSEHQEL--LE 620 Query: 614 QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPF 672 G ++ L +E +S R + V C+++PMR+IP Sbjct: 621 HLLHPFF---KGFLPQHTFSFKTIQPILLSLFKKEDVSYRETSLRAVKFCSMLPMRAIPA 677 Query: 673 KVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR-GDRSRRDDDRYLFLEALISAQQKLYISY 731 K + LLG+ +G +PR L L++ P+ S+ D DRYLFLE L SA++ L +SY Sbjct: 678 KGIALLGLEEGAFPRFLPESSLHLLAFHPQADYSPSQIDFDRYLFLETLTSAREYLLLSY 737 Query: 732 IGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDP 791 S E+ PS+LVQEL+ Y+ +S+ L H ++P Sbjct: 738 QAFS-STGKEQPPSLLVQELMSYLDKSYRLGDTCP----------SKRCFFKHPFHGYNP 786 Query: 792 QNYQPGERQSYAREWLPAASQAGKAHS-----------EFVQPLPFTLPETVPLETLQRF 840 Q + S+++E +A + K PL + + L Sbjct: 787 QYFDNSSLNSFSQENYRSALASLKTEKTSKHCFIPKFLSLRTPLCLEEEHILEIRQLIAL 846 Query: 841 WAHPVRAFFQMRLQVNFR-TEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFR 899 +P +F RL + E +IPD + F L LS+ + ++ L + + L Sbjct: 847 ARNPFEHYFNKRLGIYLEKEESRKIPDDDLFSLTSLSKASLKKEAL-----KHPLDALLT 901 Query: 900 RFRAAGDLPYGAFGEIFWETQCQEMQQ----LAD---------------------RVIAC 934 + G LP+G F + + +E++Q L + ++ Sbjct: 902 QNEIKGRLPFGYFKALSLDQLKKEIEQNKSLLLNCGIALDQIFQIELTDAVSEPTQIHPA 961 Query: 935 RQPGQSMEIDLACNG-VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN 993 +E+ + ++I G LP+V P GLL + + ++ W +L+ Sbjct: 962 CWLLPPLELTYQVDKRIKIVGILPEVTPQGLLAFI--RDEKKEVIKAWPAYLILNCLANV 1019 Query: 994 GE----SRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTC 1049 L K G + P +Q L ++ Y + +LPE W+ Sbjct: 1020 YPDMFGKHLIFAKSGSIKAPFF--DQPFTLLEHFLDYYFICQTHVSPLLPE----WIPDM 1073 Query: 1050 YDAQNDAMLDDDSTLQKARTKFLQAYEG--NMMVRGEGDDIWYQRLWRQLTPETMEAIVE 1107 + L +QK+ T Y N M RG+ D + + E Sbjct: 1074 IENPKSCQL----KIQKSLTGHFSLYNDYVNWMTRGDVDLDYVSLV---------SEWQE 1120 Query: 1108 QSQRFLLPLFRF 1119 + + P++ Sbjct: 1121 LATAYFSPIYTH 1132 >UniRef50_Q6MFB7 Putative exodeoxyribonuclease V gamma chain n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB7_PARUW Length = 1195 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 261/1161 (22%), Positives = 453/1161 (39%), Gaps = 171/1161 (14%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--FGIAAN 59 L V+ SN+L +L ++ + + PF+ +++V M WL + ++Q GIAA Sbjct: 38 LEVFFSNQLSILYEQLKNNLFGFK-QTPFKKRLVIVYGPAMQTWLTLKMAQDPDLGIAAG 96 Query: 60 IDFPLPASFIWDMFVRV-LPEIPKESAFN-KQSMSWKLMTLLPQLL-----EREDFTLLR 112 I+F + L S ++ +L+T+L E++D+ L Sbjct: 97 IEFLYLNQAFETLIHYFQLKNEKIPSILELSLAIEKELLTVLQDYHRLSDEEQQDWLTLI 156 Query: 113 HYLTDDSDK------------RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE 160 +YL +S + ++L LS A +F +Y Y +++WE E Sbjct: 157 YYLKLNSKQVGENLKLTRKMEKRLTGLSYHLAKIFQEYGKYAYSLVSKWEK-------SE 209 Query: 161 AQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALP 220 + WQ+ LWK+L G W +A F +TL+ C V IS + Sbjct: 210 HRGWQSRLWKSLF--GGNQGWTYWTKA-----FQKTLKFFPECE------VHFFSISFIS 256 Query: 221 PVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 Q L L I+ +PC +W DI+ L T ++ Sbjct: 257 KAEFQFLSKLANVAPIYYYLLSPCAVFWSDIRSDNETRYLQTYWQQKL-----------G 305 Query: 281 ENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE------------------ 322 A Q+ + NPLLA++GKLGR+ Y + + +++ Sbjct: 306 SKASQVLQLEELLRDRNPLLANFGKLGREMAYQIEESQATTHAGYILPSHVSELNDEIFF 365 Query: 323 -LDAFVD--VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVC 379 D F+ + P LLH IQ+DIL + N + D SI H+ Sbjct: 366 QEDLFLKESLQPLTLLHAIQADILMMRNP-----------EGKPPFNFERKDDSIQLHIA 414 Query: 380 HSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAI 439 S +RE+++L+ LL + E+D TL P DIIVM I Y P+IQ+VFG + L + I Sbjct: 415 PSIRREIQILYHNLLKLFEKDSTLQPNDIIVMAPQISDYVPYIQSVFG--LEESQLDFQI 472 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 D + +++ F L+ L +SR+ ++L L + +T+ +++W+ + Sbjct: 473 LDLGMQAQSEIVQGFFQLIRLSESRWEVSELLQLFGHRLFQRCHQLTQSDYYLIQEWIQQ 532 Query: 500 SGIRWGIDDDNVRELE---------LPATGQHTWRF--GLTRMLLGYAMESAQGEWQSVL 548 +GIRWG D + EL + ++ TW F + L ++SA + Sbjct: 533 AGIRWGEDWLHRNELLQRHHCEKEMVDSSSVGTWNFGLTRLLLGLTTVVKSADSHSFDSI 592 Query: 549 PYDESSGLIAELVGHLASLLMQLNIWRRGL--AQERPLEEWLPVCRDMLNAFFLPDAETE 606 P + AEL+ LL L L + +EEW +L+ +F + E Sbjct: 593 PCEGIDFSQAELMERWIRLLHSLRDDLSPLHDRSQMCMEEWSCYLSCLLDTYFKCEFEDS 652 Query: 607 AAMTLIEQQWQA--IIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL-AGPVNICT 663 ++ E+ ++ + ++ L L Q I+ R + C+ Sbjct: 653 QSIADYEELKSQFKLLGDSAKTFKETKFSFQTIKFHLNNLLQQRGITYRESHLQTIRFCS 712 Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR-GDRSRRDDDRYLFLEALIS 722 +MP+RSIP KV+ +LGM +G +PR +LM + + + D DRYLFLEAL S Sbjct: 713 MMPLRSIPAKVIAVLGMQEGAFPRAGYHTSLNLMVGQDNLDYNPNSTDYDRYLFLEALQS 772 Query: 723 AQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTC 782 +SY G + QD+ PS++++E Y+ + + + + + Sbjct: 773 VTDVFIVSYQGYTYQDSKVLQPSLIIEEFFTYLDKYYLIQNKK----------ISEQCVS 822 Query: 783 LHTRMPFDPQNYQPGE-RQSYAREWLPAASQAGKAHSEFVQ-----------PLPFTLPE 830 H FD ++P +Y++ A Q + H L LP Sbjct: 823 KHPFDAFDVSYFKPNSILNNYSQFDYRIAEQYYQTHKTPSHRLLKQFILSNYSLEDILPS 882 Query: 831 T--VPLETLQRFWAHPVRAFFQMRLQVNFR-TEDSEIPDTEPFILEGLSRYQINQQLLNA 887 + L+TL PV+ + L + ED I + E L L++YQ+ Q L Sbjct: 883 HTVIDLKTLNTLVRSPVKFYLNRGLDIYLEGYEDRIIKNQEELGLSALNKYQLKQFAL-- 940 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--------- 938 ++ E++ + G LP G F + + E+ ++ R+ Sbjct: 941 ---KEPFEKVMQIADKEGKLPLGMFKTVATKRFKDEIDEVHQRLYKHGINPSELFQIEFC 997 Query: 939 ----------------QSMEIDLACN-GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLW 981 +++++ + + I G LP V GL+ + + W Sbjct: 998 TSCSEPCQIQKDQWLLPALQLNYSDQYQISIIGKLPFVSKKGLVVLSQGSG-FSDAWKAW 1056 Query: 982 LEHLVYCASG----GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLV 1037 + L++ + E L L K E + + ++ YL LI Y M + Sbjct: 1057 PQFLLFNYATTFNIEAIERNLILSKSSEVK--KAFFKDSIPYLKHLINYYALSMRNFSPL 1114 Query: 1038 LPESGGAWLKTCYDAQNDAML 1058 P+ W+ + + A+ Sbjct: 1115 FPD----WIPSLIEGDEQAIQ 1131 >UniRef50_A2BX92 Possible exodeoxyribonuclease V subunit C 125 kD polypeptide n=7 Tax=Prochlorococcus marinus RepID=A2BX92_PROM5 Length = 1060 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 176/1152 (15%), Positives = 409/1152 (35%), Gaps = 131/1152 (11%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPE--MILVQSTGMAQWLQMTLSQKFGIAA 58 ML +Y+SN+++V+ L+ + P E I V + + +WL ++ I+A Sbjct: 1 MLNIYNSNKIEVISQLLAKELIISP---PLITEKLDIAVPNYFLGKWLWNEITVSNQISA 57 Query: 59 NIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDD 118 + +++ + + PEI +N +S+ W ++ +L ++ +R+++ Sbjct: 58 LYELKTISNYTETLLTNLFPEI-DMGVWNFESIKWGIIDSFEELDSYKESLPIRNWINKF 116 Query: 119 SDKRKL-----FQLSSKAADLFDQYLVYRPDWLAQW-----ETGHLVEGLGEAQAWQAPL 168 + +K+ + L+ K A+ F YL++RP+ ++ W + +L L + WQ L Sbjct: 117 LNNKKIIDGDIYNLTKKIANNFIDYLIFRPEMISNWHKYDLNSQNLFNNLNSNEYWQPIL 176 Query: 169 WKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ 228 +K L Q P I+ ++ +P ++I + L +++ Sbjct: 177 FKLL-----QKKMPEKPSCLYMIEVIKNIKKLQNYKNKIPKCIYIISDNNLSRLHVDFYS 231 Query: 229 ALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 L + +++L + W I F EN L N Sbjct: 232 KLAEFTKVNLYLLSVGDNLWNRINS-----------------IEGEVDFGGIENKLYLNN 274 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDA-----FVDVTPDNLLHNIQSDIL 343 + E +GK G +Y L+ + + ++++ ++D T ++ I Sbjct: 275 ASIEGI--------FGKFGANYQKLIEETSNIEDINLNTKSIYIDPTINSSRKKDVPLIN 326 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 +++ R ++ D SI F + ++E + ++++ +LE + Sbjct: 327 QIQKR--------LIDNKKYDFIINERDDSIIFRGHFNQLSQLEFVRNKIIEILETCEEI 378 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPAD-RYLPYAISDRRARQSHPVLEAFISLLSLPD 462 DI ++ PF++ +F + + + LPY + S + +++ L Sbjct: 379 KYSDIAIVSPQTGLIKPFLKYIFNNELINGQKLPYFFIEGDYEDSSNIYNFLLNITQLAG 438 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 + E + L F+ + + +N+ G WG+D + ++ Sbjct: 439 EKITLEKIEYFLSQDFTQNIFNFDMKEKEEIILLLNQVGFHWGLDSNERL-----GEEKN 493 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 + + + R++LG + + L + + + +L++L + L Sbjct: 494 SLEWCINRIILGLIYDKEFNFINNNLKSFSPKNISLD-LNKWVKILIKLKEYINLLRGSF 552 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 W+ + +LN + + I ++ + + Q + L++ R+ L Sbjct: 553 SYSVWVKKIKYILND---VNDFHQNFYLEICDLYRVMNNYSISYQSDQIIVLNVFREILI 609 Query: 643 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 ++ + + + + +R IP + L+ MN+ YPR +++++K Sbjct: 610 SCINNSKYKNESYINKILVSDIEKIRLIPRNTIFLINMNNVYYPRLTIKENINILNKKYS 669 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 GD S D ++Y FLE LIS +++L +S++ +DN + S ++ELI+Y + Sbjct: 670 LGDPSVFDREKYFFLELLISCRKQLIVSWVNND-KDNKKLDISYPIKELINYFESFLTIK 728 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQ 822 +++ +D Q + E ++ + + + Sbjct: 729 QRKSIIKYFD----------------YDKQQFSKTEENTFTSHYTLIDKIDWEEKKFDCK 772 Query: 823 PLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQ 882 L L ++ P + ++ + PD E + Q+ Sbjct: 773 NFK--------LSELIYWFKTPQLYWLNKN-NISPKGIFIHHPDDEYVT--NFQKSQLVN 821 Query: 883 QLLNAL-------VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR 935 L+ + +++ + +F G + A + + + + + Sbjct: 822 NLIQKIEIDNHNCIDELKNLNIREQFIENGII---APKKSIFSKEKEIKDLVLSLATNLS 878 Query: 936 QPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGE 995 Q + N ++ ++ L+ S L++ + + W++ L + Sbjct: 879 QNNNIDRTYIKSNSNKLEYFIAGEVVIELIH---SKLTLKRLSEAWIKLLFISSLDKKIA 935 Query: 996 SRLFLRKDGEWR----FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYD 1051 + + A L + I ++ L + PES +++ Sbjct: 936 KTKVIFRKENLYKSEILQSPDPYYARKILEEYINIFKNFSEKCLPLPPESTYKYVEAKMQ 995 Query: 1052 AQNDAMLDDDSTLQKARTKFLQAYEGNM-MVRGEGDDIWYQRLWRQLTPETM----EAIV 1106 ++N+ F + GN +GE D+ Q + + Sbjct: 996 SKNEK------------KAFSDRWIGNKSFTKGERDNTEIQLCFGNKKEPNFFFENDKFD 1043 Query: 1107 EQSQRFLLPLFR 1118 + S R PLF Sbjct: 1044 DLSLRLYAPLFE 1055 >UniRef50_A5EWC3 Exodeoxyribonuclease V, gamma subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWC3_DICNV Length = 1090 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 254/1180 (21%), Positives = 445/1180 (37%), Gaps = 160/1180 (13%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M R+ + L L + DD F I+V S +A +L+ +++K GI+ Sbjct: 1 MFRITQATDLAHLMPDFLTALHDYP-DDIFAETEIVVPSMAIADYLEHHIAEKMGISCRH 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLP----QLLEREDF--TLLRHY 114 + W + R+ ++ + ++ W+L + L ++L ED L HY Sbjct: 60 RYRFWGEMEWTIIERLSNRSAAQTPLSTTAIHWQLFSWLYAHRAEILADEDHVLAPLLHY 119 Query: 115 L------TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL------VEGLGEAQ 162 L D+ +L+Q S + A LF YL RPDWL W+ + L E Sbjct: 120 LLAPSSARDEQTLPRLWQFSGEQAQLFTHYLKMRPDWLLTWQQKPDCHLEDIIATLPEMP 179 Query: 163 AW-----------QAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRV 211 W Q LW+ L HR ++F L P LP+R+ Sbjct: 180 TWLRQHYDGVFTVQKYLWQQLFAE------AMEHRQQRIEQFYHRLSVDDALPA-LPARL 232 Query: 212 FICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFED 271 F+ +L L LQA G+ E+HL Y+ DI D + Sbjct: 233 FVFHPFSLTDHMLHWLQAFGQRCEVHLWLALVSNGYFPDIVDERWRQ------------- 279 Query: 272 RELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSD---LESSQELDAF-V 327 N+D G+ L++ +GK RD L LE Q + Sbjct: 280 -------------SHTNADEHFRSGHVLVSRFGKQQRDIFRLCQSHNLLEEIQHITPHSA 326 Query: 328 DVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVE 387 D +LL +Q+D+ L++++ S PL P D SI H CH R++E Sbjct: 327 DTAQQSLLQRLQADMRALDDQS-----------SLTAAPLVPNDDSIRIHGCHGLLRQLE 375 Query: 388 VLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP--ADRYLPYAISDRRAR 445 +L + L+ L D T DI++++ +++S I+ VF ++ LP ++ Sbjct: 376 LLREELVRWLNADETRQLSDILIVLPELESVQDVIRTVFPASGDYDGAVLPARLTGIIDS 435 Query: 446 QSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWG 505 + + +A + L + F L + + + I ++ ++ + +G G Sbjct: 436 SAQRLWQAISGIYVLATTPFNRHTFLQWVLQEEVCTAYGIADKAMQRTCDQLIAAGFYRG 495 Query: 506 IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA 565 + ++ + + T + L R+L G AM A ++++P A + LA Sbjct: 496 FEQQDLETV-ADGDARFTLSYALERLLSGLAMPQADIWLENIVPEHNIRNDDAAALAVLA 554 Query: 566 SLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA---- 621 + Q++ R + WL R L F +T AA LI Q + Sbjct: 555 QIHQQISTIRVQQKNHTTAQFWLDELRQRLEHDFSAF-QTTAAWQLIAQTLTELTEKLQA 613 Query: 622 --EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLG 679 + A +PL + + + ++L +++ +G + I + MR++P++++ +G Sbjct: 614 HHQLTAAAADLYLPLPFILNYIGEQLSTRQVASEP-SGVITIGRIGAMRALPYRLIAFVG 672 Query: 680 MNDGVYPRQLAPLGFDLMS-QKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQD 738 + +P ++A +L++ P+ GD R D+ FL AL SA + Y D Sbjct: 673 ADQEQFPHRIAEQRHNLLTIDAPRLGDYHREHDELGSFLHALSSAGSHFWCFYTAVDPND 732 Query: 739 NSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE 798 + ER P+ VQEL+DY+ Q+ H H PF + Y+ Sbjct: 733 HEERLPAAPVQELLDYLAQNGV--------------DQYLHYHLRHQPNPFHREPYRTAP 778 Query: 799 RQSYAREWLPAASQAGKAHSEFVQPLPFTL-------PETVPLETLQRFWAHPVRAFFQM 851 A W ++ + + LP + +T+ L + R P R F + Sbjct: 779 ----APLWQKVQHHLQQSAPDVLPFLPESETFTVNQAEKTMLLSQIARDLLKPARTFLRA 834 Query: 852 RLQVNFRTEDSEIPDTEPFIL----EGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDL 907 +++ D EP + +GL R+QI Q LLN F+ L Sbjct: 835 H-KIDCSVTDVATDILEPLVFDAQSDGLKRWQIYQALLNDSPH----------FQYLPFL 883 Query: 908 PYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL---ACNGVQITGWLPQVQPDGL 964 P GA G + Q Q ++ ++ C ++ + L + + QI+ LP V+ + Sbjct: 884 PAGAAGHHYHLLQNQRIEAQRAQLFECTGERENTPLQLKTVSFSNGQISADLPAVEVNKW 943 Query: 965 LRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDG---EWRFPPLAAEQALHYLS 1021 + SV WL +L++C G GE L + +RF PL E A L Sbjct: 944 VSLSARRYSVRSIFSEWLHYLLWCVQTGGGERWLSFAEKEMSVVYRFLPLECETAERELK 1003 Query: 1022 QLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMV 1081 + + + + L + E + +KA ++L + Sbjct: 1004 NWLAIWSR-LDSILGMPLEIAWEIAVAQKEKNP----------EKAVEQWLNKEIYDD-- 1050 Query: 1082 RGEGDDIWYQRLWRQLTPETMEAIVEQSQRF--LLPLFRF 1119 + ++Q L R + +R+ PLF F Sbjct: 1051 ----EKEYWQLLLRGQNSTEL-----LLKRWHEYQPLFAF 1081 >UniRef50_D0LXX8 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LXX8_HALO1 Length = 1274 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 234/1106 (21%), Positives = 399/1106 (36%), Gaps = 133/1106 (12%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDD----PFEPEMILVQSTGMAQWLQMTLSQKFGI 56 MLR+ +SN + L + + ER P I+V + + ++++ ++ + G+ Sbjct: 1 MLRLTYSNHFEELCRALCQELAAERRRRRQLLP-ATAHIVVPNHHITAYVKLAVANQLGV 59 Query: 57 AANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ--LLEREDFTLLRHY 114 AAN+DF +SFI + V E + + L+++L LL ++ + Y Sbjct: 60 AANLDFRFISSFIAEC---VPDERRDLRVLDTPHLHALLLSVLADEALLAEDELAPVAAY 116 Query: 115 L-----TDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGL--GEAQAWQAP 167 L D+ + FQL+ + A LF Y + R D L W G + + WQ Sbjct: 117 LGAAGGEQDAVDLRRFQLAQQLATLFSDYRLSRGDLLRAWREGPALGDTRSAATEIWQRR 176 Query: 168 LWKALVEYTHQLGQPRWHRANLYQ-RFIETLESATTCPPGLPSRVFICGISALPPVYLQA 226 LW A+ + L ++ E + +P V + G S LP + + Sbjct: 177 LWLAIFDAERGLLARIREETGVHWVHGPELFDEYLIKDLAVPRSVHLIGFSYLPWAHHKV 236 Query: 227 LQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQL 286 L+ L + I +H+ NPC +W D++ + +L RQ + D F D ++ Sbjct: 237 LERLSRFISVHVYAFNPCMEFWEDLRAG-WETRLAGRQLKSRKGDAVQLSFEDLDD---- 291 Query: 287 FNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV----------------- 329 P L WG+ GR+ + +L + FVD Sbjct: 292 ----------TPALRLWGRPGRENVRILDEQTQCDFDARFVDPAAPEAEDAAAADAADAA 341 Query: 330 ------------------------TPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKR 365 P +LL +Q DIL AG + + Sbjct: 342 SSAESQAAAPDLFAGLGLGAAAAEPPVSLLAALQRDILFRHPARRAG--------APDAP 393 Query: 366 PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA--DIDSYSPFIQ 423 L D S+ C S QRE+E++ + + +++ DP L DI ++V D + Y + Sbjct: 394 ALVAGDRSVQILGCPSIQRELEIIGNEIWSLMARDPGLRFNDIALLVGRADQELYQAHVP 453 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF 483 VF +PY +D ++EA LL LP RF ++L LL P + AR+ Sbjct: 454 GVFAEL---HGIPYHFADAAVTGESRMVEALGLLLDLPFGRFTRPELLRLLTHPAVLARY 510 Query: 484 DITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE 543 + W GI G D + + W+ G+ R+ LG M + Sbjct: 511 P--DVDPDDWVHWSERLGIVHGADTRDHAATYI-ERDLFNWQQGIRRLALGAFMAGERSG 567 Query: 544 WQSVLPYDES----SGLIAELVGHLASLL----MQLNIWRRGLAQERPLEEWLPVCRDML 595 D S L A+L+ A + R E+PL W M+ Sbjct: 568 ELRPFAMDGSAYLPEELPADLLPSAARFALVARSLIADARYCQQAEKPLARWRIFFDLMV 627 Query: 596 NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERI-SQRF 654 +++ P + + + +AI G V + + L RL + R Sbjct: 628 DSYLAPQNDEDE--RNLAACREAIATLAGSDIDGRPVRYRIACELLRARLGKLRGERGEL 685 Query: 655 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRY 714 LA V + L+PMR IP++VV L G+ +G +P DL + K +RGD S R+ DRY Sbjct: 686 LAHGVTVAPLLPMRPIPYRVVFLAGLGEGHFPASERESPLDLRAAKRRRGDVSPRERDRY 745 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 774 LFLE L+SA+++LY+SY+ R + PS +V EL D++ +S Y E + Sbjct: 746 LFLETLLSARERLYLSYVSRDERTGETLQPSPVVLEL-DHLVRSGYTGEGEGTS------ 798 Query: 775 RVKAHLTCLHTRMPFDPQNYQ---PGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPET 831 + H +DP+ + +S R A + A + Sbjct: 799 -----IAIDHPLRRYDPRYFPALFATIGKSDDRSKSAAPAPTPAATATISDADADAAAGY 853 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPF--ILEGLSRYQINQQLLNALV 889 + + R + L+ R +P L G + ++L + Sbjct: 854 LSVAPAAR--RQAHVLALRRHLEHTLREHGHGMPSVGELRHALSGPRHAALRERLGWTAL 911 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNG 949 E A A+ G+ + ++ R + + + L Sbjct: 912 EAATAPPPRVELAASPTNENREPGDGAADEVVPISLRMLRRFLETPLQAWAAAV-LRLRE 970 Query: 950 VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWR-- 1007 ++ + Q P + ++ EHL A S + + Sbjct: 971 SELDDPVAQADESFSTPVAPMVGLLSDVFG---EHLSAGAPSLEALSERYAERAQYLELT 1027 Query: 1008 -------FPPLAAEQALHYLSQLIEG 1026 F + +E+ L L + Sbjct: 1028 GRSPTGVFSDIDSERHLAILQRWQAH 1053 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 74/248 (29%), Gaps = 55/248 (22%) Query: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP-DTEPFILE-----GLSRYQINQQL 884 + L L+RF P++A+ L++ D + E F GL + L Sbjct: 944 PISLRMLRRFLETPLQAWAAAVLRLRESELDDPVAQADESFSTPVAPMVGLLSDVFGEHL 1003 Query: 885 ------LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG 938 L AL E+ + G P G F +I E +Q+ + Sbjct: 1004 SAGAPSLEALSER--YAERAQYLELTGRSPTGVFSDIDSERHLAILQRWQAHIETLAPGP 1061 Query: 939 QSMEIDLACNG-------------------------------VQITGWLPQVQPD----G 963 + L+ V++ G V D Sbjct: 1062 REPASVLSFGRAPETRDAGLLLPPLALPISLPDGEGGQRVVRVELVGSTSPVFADPALGA 1121 Query: 964 LLRWRPSLLSVAQGMQLWLEHLVYCASG--GNGESRLFLRKDGE----WRFPPLAAEQAL 1017 ++ ++ +L+H V A+ L + G+ + P +A A Sbjct: 1122 VVTSYTDKERPRDRIRGFLDHAVAIAAECEDAAARTLSVVTSGKHCGRYALAPWSAVDAR 1181 Query: 1018 HYLSQLIE 1025 YLS+L+ Sbjct: 1182 AYLSELVR 1189 >UniRef50_Q4FSM9 Possible exoribodeoxynuclease V, gamma subunit n=3 Tax=Psychrobacter RepID=Q4FSM9_PSYA2 Length = 1512 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 196/989 (19%), Positives = 349/989 (35%), Gaps = 222/989 (22%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M + S+R + L + + + + FEP +++V S + WL T++ + GI+ + Sbjct: 1 MFTIIQSHRTENLVDQLL-VQYQSKNQPVFEPFIVIVPSMVLGDWLDKTIASRAGISTLV 59 Query: 61 DFPLPASFIWDMFVRVLPE----------------IPKESAFNKQSMSWKLMTLL---PQ 101 + W + VL +P+ + + M W+L L Sbjct: 60 RTKFWGQYQWTLMQDVLTRHNAYLLEIDPEAAILNVPEVAVLSPTVMQWRLFGYLTYYQA 119 Query: 102 LLEREDFTLLRHYLT-------------DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQ 148 L+ +++ + L +++QL+S A +F++YL +R DWLA Sbjct: 120 LIVKDETHPVNPLLASLIDEPKEGGEQDKAQQDARIWQLASDLARVFNRYLTHREDWLAL 179 Query: 149 WETGHLV----------------------------EGLGEAQAWQAPLWKALVEYTHQLG 180 W + E E + Q LW L HQ Sbjct: 180 WSHNKPLNVDELIADKDALSLRFDKYARGTPDWLVEHYVELEVAQRFLWSHLFADVHQ-- 237 Query: 181 QPRWHRANLYQRFIETLESATT-CPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 HR + F L+ LP + I I LP L LQ L ++++I LL Sbjct: 238 ----HRVTIENTFWSALKDNKANERAQLPKILRIFTIQQLPQTELDFLQRLSQYMDITLL 293 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 NP + +W DI D ++L + +D G+ L Sbjct: 294 HYNPSKLFWADIVDKSWLQRQQIINPES----------------------VFLRDYGHSL 331 Query: 300 LASWGKLGRDYIYLLSDLESSQELD-----------------------AFVDVTPD---- 332 L+ GK RD +L++L +++ +F D D Sbjct: 332 LSRLGKQSRDTFAMLANLSGNEQYQDELVEWQDNFENSDDGLNDDFGFSFDDSAYDVDDA 391 Query: 333 ----------NLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDP------------- 369 +LL +Q+D+L L+ ++ V S++ +K+ Sbjct: 392 NNSQITQNSPSLLRRLQNDVLMLDEQSTQQVTAATVSQAVSKQIEPSFDKEKPEMAWYED 451 Query: 370 ------------------LDSSITFHVCHSPQREVEVLHDRLLAMLEE-----DPTLTPR 406 D+S++ H CHS QR++EVL + L E + Sbjct: 452 EALENKRFERERFWVSSWQDNSLSIHSCHSLQRQLEVLRIMIGRWLNEPIKPGEKKRHIS 511 Query: 407 DIIVMVADIDSYSPFIQAVF--GSAPADRYLPYAISDRRARQSHPVLEAFIS---LLSLP 461 DI+V++ D++ + I ++F G LP ++ + EA I LL Sbjct: 512 DIVVLLPDVERHHALISSIFVSGKGQDGLTLPAKVTGVVDADIRQLWEAIIGFYKLLGSH 571 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL--PAT 519 +RF + +VL L +P L F +T E + + E+G G D+ ++++ Sbjct: 572 SARFEAPEVLDWLMLPPLFESFGLTHEQMSRGCDLLVEAGFIRGFDELHLKQTLDSNDFD 631 Query: 520 GQHTWRFGLTRMLLGYAMESAQ----------------GEWQSVLPYDESSGLIAELVGH 563 + ++ L R+ LG M A + LP + S A +V Sbjct: 632 YRFSFAQALDRLTLGLVMPEASLSDCLYPLAQDDWPSTTLPEMSLPLPQVSLNDAMIVEA 691 Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAI---- 619 L + L R Q+ E+WL + + D + M I Sbjct: 692 LCRIYAGLVARRDDHRQKMKAEDWLDQIETEVIHRYFGDVDQTRTMRAIYNAMNGFKSSL 751 Query: 620 ------------------IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNI 661 + + L + LS + D + L+ +++S G + Sbjct: 752 RANRHYKQYSSADSANKEVEQKLAGVEQLPLKLSFMLDSIESELESQQVSAEP-TGVITF 810 Query: 662 CTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRYLFLEAL 720 +R++PF++V +L MN +P + +DLM + +RGDR DDD FL+AL Sbjct: 811 GRFGALRNVPFELVVMLNMNLSEFPGRERDNRYDLMKATNARRGDRVSEDDDNGAFLDAL 870 Query: 721 ISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY------------LPGDEALN 768 + A+ ++ Y G+S+ D E P+ + EL+ ++ + Sbjct: 871 LCARSACWMFYNGQSLTDTHEHLPANPISELLQFLQGEIQWQVNSLETLPKNIDPTTESL 930 Query: 769 CDESEARVKAHLTCLHTRMPFDPQNYQPG 797 +K L H +PF ++ Sbjct: 931 KRYLPKLIKQWLVTEHPALPFHESLFETE 959 Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 23/184 (12%) Query: 957 PQVQPDGLLRWRPSLLSVAQGMQLWLEHLVY---------CASGGNGESRLFLRKDGE-- 1005 + P L P+ S ++ WL HL + A+ +G S K Sbjct: 1321 AEQSPKQWLNILPNSASPRHLLKFWLSHLYWQVARRTTAEQAASNDGVSIWRFNKPSSQI 1380 Query: 1006 --------WRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAM 1057 ++ P+ E A+ L + + P+ +LPE ++L C A+ Sbjct: 1381 KKYEKVTAFKLSPIVYEDAVVELIKWAVFAKLSGQVPITLLPEYALSYLDKCLQAEESGD 1440 Query: 1058 LDDDSTLQKA--RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPE--TMEAIVEQSQRFL 1113 ++A +Y + + +Q + R A+ +Q Sbjct: 1441 EIGSYWPKRADFSDWLRPSYYSDTIYDTCSQHAIWQYVLRDQDAFKALSAALSTLAQPLY 1500 Query: 1114 LPLF 1117 P+F Sbjct: 1501 EPMF 1504 Score = 42.7 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 HP +AF + + +V+ + I EP L+ L+ YQI + L+N L Sbjct: 1122 VRHPAKAFLRTQ-KVHVVQGEEAIAHQEPLFLDSLTTYQIKEHLINEL 1168 >UniRef50_C9RQA7 Exodeoxyribonuclease V RecC subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQA7_FIBSS Length = 1256 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 208/1134 (18%), Positives = 377/1134 (33%), Gaps = 182/1134 (16%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML + + L+ L M V +PFE ++ + QW ++ QK Sbjct: 14 MLYLKFALNLENLADKMIDAVSDA-WTNPFEAPAVIFPDPKLEQWFRLKWVQKKK----- 67 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMT--LLPQLLEREDFTL-------- 110 F M R L EI +KQ + +++ +L L++ D Sbjct: 68 ---SLIGFKSMMIDRFLMEILIGDDTHKQKLHAEMLRNVILAHLVKETDGVPNYMRMDDE 124 Query: 111 LRHYLTDDS--DKRKLFQLSSKAADLFDQYLVYRPD-------------WLAQWETGHLV 155 ++ YL D D+ LF +SK A LF +Y RP L +W+ HL Sbjct: 125 VKRYLVIDRTLDETHLFDFASKMASLFLEYETSRPKDFIRRADGSSAPGILEKWKQDHLD 184 Query: 156 E-------GLGEAQAWQAPLWKALV-----------------------EYTHQLGQPRWH 185 + + + +AWQ L+ A+ E T L P + Sbjct: 185 DFFGIANHDIAKREAWQRELYSAIFHEHQGKPSLLTEVFENEAKRKGIERTEYLTIPYLY 244 Query: 186 RANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCR 245 +A + T + L FI G+ + Y LQ + +++ NPC Sbjct: 245 KACQDDKGNVTFHTEHIGNTPL----FIFGLGGMGQFYRVILQKYAETHDVYAYIQNPCM 300 Query: 246 YYWGDIKDPAYLAKLLTRQRRHS----------FEDRELPLFRDSENAGQLFNSD----- 290 +W D + R + +D + D NAG+ + D Sbjct: 301 EFWEDTSTVHDQNANIHRNWKSRDGQWKDNGTSLDDVREKMSVDYSNAGESTDVDDISEY 360 Query: 291 --GEQDVGNPLLASWGKLGRDYIYLLSD--------LESSQELD--AFVDVTPDNLLHNI 338 E + N LL +WG+ GRD I L S +E D D+ D LLH + Sbjct: 361 SNEEAEAENTLLCNWGRSGRDNIKLWCQAVNYDFDFSMSGREDDNRTAQDLPQDTLLHKV 420 Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 Q I N + D S+ + RE+E LH + +++ Sbjct: 421 QYAIANRINTLP----------NFTASDCKARDFSLDITAAPTKIREIEALHTNISKLMQ 470 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR------------YLPYAISD--RRA 444 DI+V+ +D Y I+ +F P + ++P+AI D R+ Sbjct: 471 --KGARVNDILVVSPALDDYRTAIKTIFDQTPEKKKYAGENEKEGFLHIPFAIVDSPARS 528 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 + VL+ ++L LL PV+ IT+E + W+ + I Sbjct: 529 SLTENVLDNLFTILE--QGTITRPTFFELLRNPVVQLTRHITDEDVSNWESWIEATNIYR 586 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS-VLPYDESSGLIAELVGH 563 D + +E W G+ R+LL ++ LPY + + + Sbjct: 587 --DREQKKE---------DWMSGVRRLLLAKMTKNPVEFSDGEFLPYADMATSDNSSLCK 635 Query: 564 LASLLMQLNIWRRGLAQERPLE-------------EWLPVCRDMLNAFFLPDAETEAAM- 609 + L W ++ ++ + + L+ PD + Sbjct: 636 FVECIESLKKWMEFAGCKQNVKHEIVCENRIENLDKLCDFINEWLSMASSPDGFASERII 695 Query: 610 -TLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS-QRFLAGPVNICTLMPM 667 + Q + + + ++ +++ L S + +P Sbjct: 696 VNDVTQSIEGLRNQMDA--GLQSISWKVVKQTLLNAAQSSAYSCGSLFVNGITFMNFIPN 753 Query: 668 RSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDDDRYLFLEALISAQQK 726 R IP K + +G + +P DL S +P GD S RY FL L+S + Sbjct: 754 RIIPVKHLFFIGGDSMNFPGAKQQNTLDLRKSCRPWPGDDSPIAKRRYAFLCQLMSTSES 813 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTR 786 +ISY+ + I+ ++E +P+ +V ++ ++ + D + + L Sbjct: 814 FHISYVNQDIRKDAELYPTSVVNDIRKFLVNAVNSKTDVSNEKVSQSDAWPENKISLDET 873 Query: 787 MPFDPQNYQPGERQSYA-----REWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFW 841 F+ Q R A ++ A+ A + LP+ V + L F Sbjct: 874 RSFEDLFTQKSLRNKRAFLNMMQDGYAHANPETDAIESASNNITAKLPDRVSIYMLSSFL 933 Query: 842 AHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD--DAERLFR 899 P + L + +ED E EP L+ L + + + L A + + E+ + Sbjct: 934 KDPFQFRISQML-ADSDSEDPEKEMFEPVQLDALKKSTLLKMTLAAELSNKSDELEKFKK 992 Query: 900 RFRAAGDLPYGAFGEIFWETQCQEM--------QQLADRVIA---CRQPGQSMEIDL-AC 947 + G P G FG+ + + L ++ + + ++ + Sbjct: 993 ESKLKGGTPDGIFGDKLSSEIEENKKIIMDNMGEALVKKIKESWCYQAKIEDIQFERSDS 1052 Query: 948 NGVQITGWLPQVQPDGL--------LRWRPSLLSVAQGMQLWLEHLVYCASGGN 993 ++G L L + ++ + ++ L A N Sbjct: 1053 EKWTLSGSLDWSDSSDLGKITEMISITSSNKKPTIDNFLTPYIRALAVIAQRSN 1106 >UniRef50_C8NCI0 Exoribodeoxynuclease V, gamma subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI0_9GAMM Length = 1251 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 189/884 (21%), Positives = 335/884 (37%), Gaps = 89/884 (10%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M R+ S L A + DP ++V + + L TL+ + GIAA I Sbjct: 1 MYRLIESTDYPALLARYLQDYDHYSRADPLGDTPLIVPTLPVGNILIQTLASQRGIAAGI 60 Query: 61 DFPLPASFIWDMFVRVLP--EIPKESAFNKQSMSWKLMTLLPQL-------LEREDFTLL 111 L ++ W + R+ ++ ++ W+L + L Q LL Sbjct: 61 TLRLWHNYEWMLVERITGKSRSSSQAPLGNTAIRWELFSYLYQHGNTILADPGHPQHALL 120 Query: 112 RHYLTDDSDK------RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL--VEGLGEAQA 163 R L D+DK R+L+ S + A+L+ YL RP+WL+ W+ ++ L + + Sbjct: 121 RG-LYPDTDKITHDHTRRLWVYSGQLANLYSTYLNQRPEWLSAWQNADPPPLDALLKNDS 179 Query: 164 WQ------APLWKALVEYTHQLGQPRW-----HRANLYQRFIETLESATTCPPGLPSRVF 212 Q A ++AL + +L R+ R + F +TL++ + LP + Sbjct: 180 LQQLPPQIADHYRALYQQQSRLWHDRFAAIHAERERRRETFWQTLKTRESARRLLPPYIP 239 Query: 213 ICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDR 272 + + L ++ LG + ++ Y DI D +L +L R Sbjct: 240 VFAPTHLHAAEHDFMRRLGNYTDLTHYHLAASDGYIDDIVDSRWLRELKARAAGKPSG-- 297 Query: 273 ELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPD 332 ++ G+ LL+ +GK RD LL + L A P Sbjct: 298 ------------------EHREHGHELLSRYGKQQRDLSRLLHADSDPEPLPA-TPAPPH 338 Query: 333 NLLHNIQSDILELENRAVAGVNIE-----------------EFSRSDNKRPLDPLDSSIT 375 NLL +Q++I EL+ VA E + N P D S+ Sbjct: 339 NLLTALQAEIRELKEDHVAACLAATTLPPSLQSGGRTGRGCENRAATNPDHQTPQDHSLR 398 Query: 376 FHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF---GSAPAD 432 H CHS QR+ E L ++A L DP+ DI + + D + ++A F G + Sbjct: 399 IHGCHSLQRQCETLRSDIVAWLNADPSRRLSDIYIHLPDPAAAQTTLRATFPPGGDYDGN 458 Query: 433 RYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRY 492 R LP + + + + +L + RF + VL L I E ++ Sbjct: 459 R-LPARLIGVTENPAENLWRSLAGRYTLINGRFDAPTVLDWLHNEDTCHSLGINSEHMQR 517 Query: 493 LRQWVNESGIRWGIDDDNVRE--LELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPY 550 + + +G R G D +++ ++T+ + L R++ G A ++ +P Sbjct: 518 ITAALVAAGYRRGYDGAHLQPTLHTEDHDHRYTYTYALNRLIAGVLTPDAD-HYREAVPQ 576 Query: 551 DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMT 610 + + LA+L ++ R A+ P + WL R L+ + A A Sbjct: 577 HGLTLADLPALEALATLAENMHTLRALQAENTPAQNWLQHLRATLHDAYTH-AHNSPAWQ 635 Query: 611 LIEQQWQAIIAEGLGAQYGDA------VPLSLLRDELAQRLDQERISQRFLAGPVNICTL 664 ++Q + + Q +PL + + + +L ++ S +G + I +L Sbjct: 636 TLDQALDDLQNQLAAHQALAPQNEQHYLPLEFILENIENQLADQQNSSEP-SGVITIGSL 694 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS-QKPKRGDRSRRDDDRYLFLEALISA 723 +R++P K+ L + YP + ++L+ KP+ GD +R +D L+ + A Sbjct: 695 KNLRNLPGKLHIFLNADHDRYPARQNDERYNLIHLDKPRPGDNNREHEDLGALLDLINRA 754 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDE--ALNCDESEARVKAHLT 781 L++ Y S DN + P+ VQEL+ Y+ H A ++ + H Sbjct: 755 GDALWLYYN--SHHDNEPQPPASPVQELLQYLDDQHERASQHLRASGRLDAGQTLPRHYH 812 Query: 782 CLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLP 825 H PF P R + E + Q + P P Sbjct: 813 TEHPADPFQPD--AHETRPAPLWENIRTTLQQNTPTATETSPPP 854 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 103/347 (29%), Gaps = 28/347 (8%) Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ 812 D + + + + + T T P + G R WL + Sbjct: 884 DALASAAGEGWGGGSDRKTTATVASSTNTSPETLANMPPSTREGGARP---HAWLSNSQP 940 Query: 813 AGKAH-------SEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 A + PE + L + R P A+ + + + Sbjct: 941 APQKTFLPLHIPPALAADAAPQNPENLTLAQIVRDLQKPASAYARAH-HIANTAAQTPPE 999 Query: 866 DTEPFILEGLSRYQINQQLLNALVEQD-DAERLFRRFRAAGDLPYGAFGEIFWET----Q 920 EP L GL +Q +Q ++ AL + D R A P G G+I E Sbjct: 1000 SREPLALYGLDNWQADQHIIAALEQNHPDPATHIARLPA---YPGGISGQIQLEQRLATY 1056 Query: 921 CQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQL 980 Q L DR P + +T LP P R S + Sbjct: 1057 RARQQTLLDRADLATWPTLREQTLNLGEHSSLTALLPAHSPT-WPRLSASRAKPKHHARY 1115 Query: 981 WLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPE 1040 WLEHL + A+G +G + + D R PL A A L Q + L E Sbjct: 1116 WLEHLAWNATGAHGTTLIHYADDTLLRLAPLPAADAQRQLHQWLAVREHLQKNLWLAPLE 1175 Query: 1041 SGGAWLKTCYDAQN--------DAMLDDDSTLQKARTKFLQAYEGNM 1079 +L+T + + DDS + + GN Sbjct: 1176 LMQPYLETFTTDKAADKQAALVRDWIHDDSHKNDDGDLWRHLWRGNE 1222 >UniRef50_Q057F6 Exodeoxyribonuclease V, g chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F6_BUCCC Length = 1042 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 147/785 (18%), Positives = 355/785 (45%), Gaps = 35/785 (4%) Query: 335 LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 L +++DIL ++ + ++K+ ++ D+SI+ + C S EV+++++ + Sbjct: 282 LSYLKNDIL-----------KKKIYKINSKKKININDNSISINQCKSYIHEVQIVNNYIH 330 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 LE + + DI++ ++ID Y P+IQ +F ++ L + + + +L Sbjct: 331 KTLETNKKIKLDDILITASNIDIYIPYIQKIFN-FSQNKNLLIKKTGKEEEKKKEILLTI 389 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 LL++ ++ F +L+LL++ +L +F I ++ L + ++ I +G + + +E Sbjct: 390 KDLLNIKNNYFKPFWILSLLNIKILRKKFSIKNRDIKTLGKLISHLNIAFGFNKKHYKEF 449 Query: 515 ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 +P ++W + + R+ G+ + + ++ Y+ S+ L+G+ + + QLN Sbjct: 450 SIPDLKTYSWEYAIKRITSGFIFNNKNTIYNNIYTYNISNDKKNILLGNFINFIKQLNKL 509 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 R+ + +++ +E+W+ + ++ FF + + + L++ W+ I G+ + + + Sbjct: 510 RKKIYKKKKIEKWINIISIIIKNFFYIEKKDKKFFFLLKNIWKKNIFYGIKINFLKKISI 569 Query: 635 SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 +E + +FL+G + + L + IPFKV+C+LG Sbjct: 570 EFFINEFFKNHSLLYKKNQFLSGNIKLINLNKINLIPFKVICILGCTQEKISLFNNQDIL 629 Query: 695 DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 +L+ +K K + +FL+ + ++ L++SYI + N +PS + ++I Y Sbjct: 630 NLIEKKNKNNEN--------IFLKTIFLTKKYLFLSYIKNNYIQNK-YYPSKFILDIIFY 680 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAG 814 I + Y + + + + + + +++ + + Sbjct: 681 IKNNFYYFKKKEKKKIQKKNFLNKIYKKNKNNIINS--LFSKEKKKIIKTKKNQKKYKKI 738 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS-EIPDTEPFILE 873 + + + FW +P+ FF+ L+VN + + + E F ++ Sbjct: 739 NITIQKKIKIKKLIN----------FWKNPIEYFFKNTLKVNIKNYEENMFIEDEYFSIK 788 Query: 874 GLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA 933 L++Y+IN +L ++ + + F+ LP +I W + +++ L++++ Sbjct: 789 PLNKYKINSLILKNMLLNKKTDYHIKEFQLKNKLPQEKIAKILWYEKIKKINILSNQIKK 848 Query: 934 CRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN 993 R+ +++ I ++G + +V L++W + + + W++H++YCA Sbjct: 849 IRKFPKNIHIYYKFKKYYLSGKIKEVNKLNLIQWNVNKIKFKDIITTWIQHIIYCAFEKP 908 Query: 994 GESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQ 1053 +S L + + F + + A YL + I+G+ +G P+ ++ SG WL T + + Sbjct: 909 KKSILLSTNNKKIEFLSIKKKIAKKYLKKYIQGFIDGHKKPI-LILNSGIHWLHTIFLKK 967 Query: 1054 NDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFL 1113 + + + L A+ FL+ + G+ GE +I+ +++ L ++ I + ++ Sbjct: 968 ENVLKINKYNLNLAKKNFLKIWNGSNFFLGEKKNIFIKKIIPILNKNLIKKICNSCKYWI 1027 Query: 1114 LPLFR 1118 LP+F+ Sbjct: 1028 LPIFK 1032 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 81/179 (45%), Gaps = 9/179 (5%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 ML++Y SN+++ L + + ++ E+ L+++ + +WL++ ++ K I NI Sbjct: 1 MLKIYQSNKINFLLKKICKKIYIKKKKKILINEIFLIENKYVQKWLELYIANKKKINFNI 60 Query: 61 DFPLPASFI-WDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119 F L F+ + + K F K+ + W ++ ++ + + L+ Y Sbjct: 61 KFILLFRFLNNFFKKNNIKKNKKLIIFEKKYLQWIIILIIYNTYD---CSFLKKY----G 113 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQW-ETGHLVEGLGEAQAWQAPLWKALVEYTH 177 + K F+ S A++F QY+ ++P + +W + + WQ LW +++ Sbjct: 114 IQYKNFEFCSHIANIFIQYIYFQPHLIYEWENNKKSKKKEKKTYQWQKKLWNLIIKKIK 172 >UniRef50_A7BX05 Exodeoxyribonuclease V gamma chain n=1 Tax=Beggiatoa sp. PS RepID=A7BX05_9GAMM Length = 458 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 241/475 (50%), Gaps = 38/475 (8%) Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISA 723 + PMRSIPFKV+CLLGMND YPR LGFDL+++ PK GDRSRR +DRYLFLE+L+SA Sbjct: 1 MRPMRSIPFKVLCLLGMNDQTYPRPSKSLGFDLITKHPKPGDRSRRQNDRYLFLESLLSA 60 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCL 783 + YISY+G SI DN+ PSVLV EL+DYIG++ P + ++ Sbjct: 61 RDYFYISYVGHSIHDNTVMPPSVLVSELLDYIGKAFISP----------HQNLLDNIIIH 110 Query: 784 HTRMPFDPQNYQPGE--RQSYAREWLPA----ASQAGKAHSEFVQPLPFTLPE----TVP 833 H F P+ + + S++ E+ A ++ A + LP PE T+ Sbjct: 111 HPLQAFSPRYFNETDKHLFSFSDEYCHASSVLLNERQLAKDFIAESLPPPQPEANWKTLD 170 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893 + RF+ +P RL + ++E + ++EPF + GL RY++NQ L+ +E D Sbjct: 171 INRFARFFKNPSEFLLTERLGIKLQSETHLLGESEPFEVRGLERYKLNQTLVEKSLEGVD 230 Query: 894 AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR---QPGQSMEIDLACNGV 950 + +A+G LP+G G+ + ++Q +RV + +++ ++L + + Sbjct: 231 LHEYHKIAKASGQLPHGGIGDYAYSKLVGQIQPFVERVQQATTRQKKRETVLVNLTIDDM 290 Query: 951 QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGN--GESRLFLRKDGEWRF 1008 +ITG+L ++ D L+ +R + L +QLW+ HLV + L + ++G W F Sbjct: 291 RITGYLGRLWHDNLVHYRCAKLKATDFIQLWIHHLVLNSLPEQKLPRHSLLIGEEGSWEF 350 Query: 1009 PPLAAEQALHYLSQLIEG-YREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKA 1067 P+ +++ L L++ Y +G+ PL P+S A+++ + T ++A Sbjct: 351 KPVN--ESIVILETLLKAYYWQGLMQPLSFFPQSSLAFVEQLTTGK---------TEEEA 399 Query: 1068 RTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETME-AIVEQSQRFLLPLFRFNQ 1121 ++ + GN GE D+ +YQ + + T +++F P+ Q Sbjct: 400 FSRAQNTWRGNDFANGEFDNDYYQLCFGKETSPLDNGEFKILAKQFFEPMLAHLQ 454 >UniRef50_Q04UR0 Exodeoxyribonuclease V, gamma subunit n=4 Tax=Leptospira RepID=Q04UR0_LEPBJ Length = 1131 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 195/1212 (16%), Positives = 418/1212 (34%), Gaps = 184/1212 (15%) Query: 5 YHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPL 64 S L+ + + + ER + P +I+V ST M WL + LS+ G++AN+ F Sbjct: 6 ITSLSLEDMAVELSRNILEERKNSPLHSPVIVVPSTNMKLWLNLNLSRFSGLSANLRFLY 65 Query: 65 PASFIWDMF--VRVLPEIPKESAF-NKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 + + F L P + AF ++++ K++T L + + ++ LR +L + Sbjct: 66 LEKALEEYFHLRANLDYDPFQRAFPSREATQRKILTFLIENVNSKETIFLRSFLE---NI 122 Query: 122 RKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVE------------GLGEAQAWQAPLW 169 + F LS+K L+ Y + R W+ W ++ E +Q L+ Sbjct: 123 TRAFSLSAKLTSLYKDYELNRSSWIQSWAKEKGIDIPMISRRPSPFPQEDEYYRFQKVLY 182 Query: 170 KALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQA 229 + + + + L Q F++ ++ T P + + +S L YL L++ Sbjct: 183 QKVFLNSKEPNT-------LVQFFLKEIQKDKTHSPRNFPSLHLFCLSNLADTYLGILES 235 Query: 230 LGK--HIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLF 287 L + + I+L + Y + + + Q + +P Sbjct: 236 LSQKDKLPIYLYQFH--TGYVSNANNSLGPERWSDSQTHIALRTASVPGIIFKNLESVHT 293 Query: 288 NSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELEN 347 + N L G L DL + + +P + + +DIL N Sbjct: 294 YPKKLATLRNIL------KGNQNCDNLQDLSQDASVRFWNAPSPYREMESAANDILYRIN 347 Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHD-RLLAMLEEDPTLTPR 406 + ++ + R P VE + D +L + D Sbjct: 348 QDHRLTYLDFAILVTDMRVYRPA---------------VEWVFDGGILLQTKADAD---- 388 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR-F 465 P + +PY+++D +A ++ + + + Sbjct: 389 -----------------------PIRKKIPYSLTDIKANEASLLYRGLMDFWEICSGNSI 425 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWR 525 +L L P+L + E L L + ++ SG+++ ++ Sbjct: 426 DKRSLLKFLRNPLLHSNIRSNSESLSILEKLIDTSGVQYEESGREKDSFQI--------S 477 Query: 526 FGLTRMLLGYAMESAQGEWQ-SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPL 584 GL R+ L + + + P S + L+ + +++ ++ + + Sbjct: 478 NGLKRIRLSSILSQETAWTKYKIAPIFLESDEHSFLLTNFWETVLKAKNDILSFSEGKTI 537 Query: 585 ---EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 ++L R L F + E L + ++++ + +SLL+ Sbjct: 538 RWTPDYLKTVRASLEELFEFPGKYEQEGKLFQNWSESLLEWEGIRLHNKEEGISLLKFVT 597 Query: 642 AQRLDQERISQR-FLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 Q DQ + +L G V I L PMR +PFK + +LG+ +G +P +L Sbjct: 598 EQTFDQIPYRKGAYLTGGVTISLLQPMRPLPFKHIYILGLGEGKFPGSNDRSQLNLRKDF 657 Query: 701 PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 + D S R+ L E + SA++ L +SY+G+++Q++ P + E+++ + Sbjct: 658 REEWDISHREIQESLLWETIHSAKESLTLSYVGKNLQEDKTFEPCSHLFEIMESLQIKKA 717 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEF 820 + + HT + Q + R W+ F Sbjct: 718 VELPLHSYS----------IKYKHT----SEELKQGLVSYDFGRVWVNGNRNDYTILDRF 763 Query: 821 VQPLPFTLPET------VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEG 874 P + + ++ L +F + P+ + + +L + E+S + E F L+ Sbjct: 764 QNPKELAKTSSTPLSSGIDVKELSQFLSDPLDTYLKRKLGMYLEEEESSDYEKEIFDLDA 823 Query: 875 LSRYQINQQ--------LLNALVEQDDAERLFR-------RFRAAGDLPYGAFGEIFWET 919 ++ I ++ L++ D E++ + R++ P FG+I Sbjct: 824 IAETSILRKVHALMVPDLVSKESWSWDREKILQVLSPILEMERSSAKFPRSVFGKIQETD 883 Query: 920 QCQEMQQLADRVIACRQ------------------------PGQSMEIDLACNGVQITG- 954 + + ++ + + +++ L I G Sbjct: 884 LVRYLVTTSENLFEWKPIFQGGTYYPYLSLGDTGLSDSICKKMPELKVPLESGRFSIKGE 943 Query: 955 WLPQVQPDGLLRWRPSLLSVAQGMQLWLEHL-VYCASGGNGESRLFLRKD----GEWRFP 1009 W ++ DG L W S + + +L + + + + + F Sbjct: 944 WEHVIEKDGNLYWLFSKSLEEKPSEDYLGYKDYWRTMSFPFLTGVAFASSNENFKVYSFK 1003 Query: 1010 PLAAEQAL------------------HYLSQLIEGYREGMSAPLLVLPESGGA--WLKTC 1049 P +E++ YL++++ Y + + P+ P +LK Sbjct: 1004 PRPSEESKKKNTLTLEYRIGSPSIGIEYLAKILMEYLK--TEPV-FFPRKAFLNYYLKNI 1060 Query: 1050 YDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQS 1109 + LDD + A +FL+ E N + G +L+ + +++ ++ + Sbjct: 1061 QGDSKNKTLDDVFDDESAWIRFLKE-ELNEVKSGLS---SLVKLYPKTPNLILQSRIQWA 1116 Query: 1110 QRFLLPLFRFNQ 1121 + F P + + Sbjct: 1117 KNFYKPFLDWRK 1128 >UniRef50_Q6A851 Exodeoxyribonuclease V gamma chain n=3 Tax=Propionibacterium acnes RepID=Q6A851_PROAC Length = 1049 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 135/734 (18%), Positives = 249/734 (33%), Gaps = 61/734 (8%) Query: 373 SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQA-VFGSAPA 431 ++ H CH R+ EV+ D + A L + PTL PRDI+V+ + + A Sbjct: 289 TVEIHQCHGVDRQAEVVRDVVCAALADYPTLEPRDIVVICCGRQDTAHLLSAGTLADIDH 348 Query: 432 DRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLR 491 + + + +PV EA ++L L SR +D+L+L +P + RF +++ Sbjct: 349 PAHQLRFTTPPQREHVNPVTEAVTTILGLASSRATGQDLLSLCAMPAVQTRFGFSDDDQE 408 Query: 492 YLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS-VLPY 550 + + V+++ IRWG+D + L Q TW G+ RM+L AM S + V P Sbjct: 409 AIERLVSQADIRWGVDPAARDKAGLGRIKQSTWLAGIERMILAIAMSSTPPTYLGTVTPI 468 Query: 551 DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMT 610 + LVG LA + ++ P+ W +++ A+ + Sbjct: 469 TDVGSTTIPLVGKLAEFVSRMRKAFLDTETPAPIATWKRRVSQIVDNLAAAPADAPRSAL 528 Query: 611 LIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSI 670 A++ G + D L R + G + +C + + Sbjct: 529 QTL----ALLTGLEGVAEDREFDRQEIIDLLNWLSGIHRGRHSWFDGSIQVCRPGELTPV 584 Query: 671 PFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYIS 730 +VV ++ + A L L + ++R+D L+ +SA+ L + Sbjct: 585 DHEVVIVVDPDQE---AVHADLLQGLRDENLDPAAKARQD-----LLDVALSARTLLVVV 636 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD 790 RS N P + L + P H PF Sbjct: 637 RQARSPVSNLTVLPGPFTRTLSQALKAQSATPR-----------------CVKHGLQPFS 679 Query: 791 PQNYQPGERQSYAREWLPAASQAG-------KAHSEFVQPLPFTLPETVPLETLQRFWAH 843 + +++ AA+ AG + H + P+ + L L +H Sbjct: 680 ADEFSHHSDTAWSGFDNTAAAAAGCHPGSQPRPHRVVLPPVAKLPESRMSLIDLTLALSH 739 Query: 844 PVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRA 903 P R + R +++P P L +Y I ++L L + R Sbjct: 740 PARTLLRARAGAPANERSTDLPVDLPLAPSSLDKYWIRSRILADLEHGFLLDDAINAERL 799 Query: 904 AGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--QSMEIDLACNG------------ 949 G P G G+ ++ Q+ R R Q +EID + Sbjct: 800 RGSTPPGHLGQHIVTKLAEDAMQICQRANRLRGDQDEQFIEIDFDLDEGNSPPLLWPDEL 859 Query: 950 -------VQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYC-ASGGNGESRLFLR 1001 V + G + V+ ++ S + + LW++ L A+ G + + Sbjct: 860 IVDPMHPVHLHGRV-GVRNHQIVHAVASRANARPLLDLWVDLLAVTVATDEPGWFGVLVP 918 Query: 1002 KDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDD 1061 R A + A L+ L + + + A ++ A ND Sbjct: 919 NGDVLRMASPAPDHARDILAGLARVAWWSNQQLIPLPVKLAHALVELSPMAHNDYRTGAS 978 Query: 1062 STLQKARTKFLQAY 1075 + + ++ + Sbjct: 979 ALQVQWSREWDPNW 992 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 23 RERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPK 82 E DPF +++ ++ L +L+++ GIAA ID P + +L + Sbjct: 23 SEPTTDPFVRPILVAPGNAQSRSLLQSLARRHGIAAGIDTTTPLGLRERLEEDLLGVKRE 82 Query: 83 ESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK---RKLFQLSSKAADLFDQYL 139 + S++ ++ ++ F ++ +L + R + + +AAD Sbjct: 83 NDPWQPGSLALRICRVIEN--NSPGFEVVSAHLEASRRQGVPRATWTTARQAADAIC--A 138 Query: 140 VYR--PDWLAQWETGHLV-----------EGLGEAQAWQAPLWKALVEYTHQLGQPRWHR 186 + R D L W G + L A+AW APLW+ L+ + P Sbjct: 139 LARDSHDVLNAWADGATPTTHQGDTDLAGDPLDPARAWWAPLWRTLLAEPCHVPDP---- 194 Query: 187 ANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFT 241 + +Q ++ + + + P + + + +AL ++ ++ Sbjct: 195 VSRHQLLVDAILTQSRSEPP----IVWFSSTTTAQHDVSLAEALSASHDVTIVHL 245 >UniRef50_C0GDI4 ATP-dependent nuclease subunit B n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDI4_9FIRM Length = 1147 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 177/1089 (16%), Positives = 317/1089 (29%), Gaps = 195/1089 (17%) Query: 14 EALMEFIVERERLDDPFEPEMI-LVQSTGMAQWLQMTLSQKFGIAANIDFP----LPASF 68 + +P P +I LV Q ++ L+Q G F Sbjct: 15 TQRCLQSIAHYSKTEPMGPPIIFLVPEQATFQ-MERELAQMCG---GGTFRAQVLSFRRL 70 Query: 69 IWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLF--Q 126 + + P S +Q +L +LL+ L + + ++ F Q Sbjct: 71 AYHLLQSKGGLPPVMSELGRQM-------VLRRLLQESQAEL---TIFGRAAQQPRFCEQ 120 Query: 127 LSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHR 186 L+ + +L + YLV P+ L + GEA L + + R Sbjct: 121 LAVQIREL-NNYLVS-PEML---KNQAASPETGEALR------SKLSDLSTVFAAYRTFT 169 Query: 187 ANLYQRFIETLE--SATTCPPGLPS--RVFICGISALPPVYLQALQAL---GKHIEIHLL 239 A + +TL +A LP+ RV++ G + P Q L AL +H+E+ L Sbjct: 170 AGSFMDPEDTLAILAAAVEEGALPAGTRVWVDGFAGFTPQEFQVLSALFSTAEHVEVALC 229 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 DP ++ E ++ +P Sbjct: 230 L------------DPRHIPAQPQ-----------------------------EDELFHPT 248 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 L + L L + A L Q+ E V Sbjct: 249 L--------ETYLQLRRLVGEAGVPAL--PPEQLPLDEKQTRFAHSEALQVLEAGFGRLP 298 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 R + I + EVE + +L ++ + RDI +++ D Y Sbjct: 299 VESYPREAEE----IRLVTAAGTRAEVEAVACDILHLV-REKGWRFRDIGMILRDFSRYH 353 Query: 420 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 + A+F + +P+ + +RR+ HP++E S L + F E VL LL +L Sbjct: 354 DLVAAIF----QEYQIPFFVDERRSATHHPLVEFLRSALDAAQANFALEPVLQLLKTDLL 409 Query: 480 AARFDITEEGLRYLRQWVNESGI---RW--GIDDDNVRELELPATGQHTWRFGLTRMLLG 534 I+ E L + GI RW G L L + L Sbjct: 410 P----ISRETADKLENYARAHGIRGSRWLDGKPWSFRLRLSLDESRDTATETDAH---LE 462 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 E + P++ G A A + E L+ W Sbjct: 463 EINEGKTVFGRIFTPFNRQVGGSARPA---ADFCRAIWALLESTDAELQLQNWSEE---- 515 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 + T A + ++ + + + L L L+ + Sbjct: 516 -----DANPATAAQHRQVWSGVVELLEQIVSTLGERQISLQEFSQILQAGLEALTLGLVP 570 Query: 655 LA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG--------- 704 V + ++ R + +LG+++G +P +L G L++ + + Sbjct: 571 AGLDQVIVGSVERSRQPRLRAAYVLGLSEGDFPARLKEEG--LLADEEREALQENGVDLA 628 Query: 705 --DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 R + ++YL AL + + L++S + + PS L L + + Sbjct: 629 VTKRQKLFHEQYLSYIALTRSSEYLWVSCPLADE-EGKAKRPSALFNRLRETFPYNDVHF 687 Query: 763 GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGK------- 815 + E + + G + A + Sbjct: 688 FGNTPDSKEDLHALAGAEKSAAALLLQAGGVAAGGAMSDFWAAAYNEALSIPQVYNRMRM 747 Query: 816 -----AHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDS- 862 + PLP + + L++F P F + L++ R E Sbjct: 748 LWPSLTERNHIAPLPAETVLEILGTELKSSVSRLEQFARCPFAHFARYVLRLQERHEFRV 807 Query: 863 EIPDTEPFIL------------EGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYG 910 E P+ F EGL Q+ + A + E L R + L Sbjct: 808 EAPEMGNFFHHALRLFAESLQAEGLDWAQLETEEAQARMNSI-VEELIPRLQGEILLSSA 866 Query: 911 ---AFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNG---VQITGWLPQVQPDGL 964 E ET Q + L + + ++E+ Q+ Q++ G Sbjct: 867 RMRYLAERLKETLAQAVAALTEHARRSQFKTVAVEMSFGSGKTPAWQLRCGQTQLKLYGQ 926 Query: 965 L-RWRPSLLSVAQGMQLWLEHL-------------VYCASGGNGESRLFLRKDGEWRFPP 1010 + R + WL + V+ + L + K+ F Sbjct: 927 IDRIDLAEAEGK----AWLRVIDYKSTPIELKLSDVWHGLSLQLLAYLAVVKENARAFSA 982 Query: 1011 LAAEQALHY 1019 L AE A Sbjct: 983 LPAESAGAL 991 >UniRef50_Q9K2F1 Exodeoxyribonuclease V, gamma subunit, putative n=7 Tax=Chlamydophila RepID=Q9K2F1_CHLPN Length = 1024 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 174/1130 (15%), Positives = 361/1130 (31%), Gaps = 210/1130 (18%) Query: 6 HSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLP 65 SN L A + + PF ILV + W++ L D Sbjct: 11 FSNSPRHLLAQLAEDITSTH-QKPFTKRWILVANATTGHWIKNQLVHVLS-----DHIFM 64 Query: 66 ASFIWDMFVRVLPEIPKESAFN----KQSMSWKLM--TLLPQLLEREDFTLLRHYLTDDS 119 S I+ ++ + S + ++ L+ +L ++ + F R +L+ + Sbjct: 65 GSTIFTASDSIVKHLFLGSGCSQPNIPDYLTLPLLINNILEEISKASKFENGREFLSPPT 124 Query: 120 DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 ++ + K A F Q+ + A +Q L++ L Sbjct: 125 -----YETTKKLAAAFKQFHTF------------SQRPTKNASHYQ-ELFQIL------- 159 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239 H ++ + F L + T + I G + LP + L + ++ Sbjct: 160 ---ESHFSSYEEMFTTILNNRTQEEDC---SLHIFGYAHLPKHLAEFFINLSTYFPVYFY 213 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 +PCR Y+GD+ + + ++ A L Sbjct: 214 CFSPCREYFGDLLSDRAIDFFWNQLPDSPIKNAWEHYVLSDRQA---------------L 258 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 LA+ + D E + + F+ D+ L IQ+ IL+L+ + + + Sbjct: 259 LANLAHKSQSSQNFFLDREIDYQ-EMFLPSKHDSSLGVIQNSILDLKPTSPQDFSQTK-- 315 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 +I + + REV+ + ++ +L ++P +I ++ + I+SY Sbjct: 316 ------------QTICIYRALNIPREVQEVFCKVTELLHR--GVSPEEIFILSSHIESYK 361 Query: 420 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 + A+F ++P +D ++ + + L S+ ++ +L LL P L Sbjct: 362 VHLNAIFN-----PHVPIYFTDEVDPRAEDLRNKILLLSSILQTQGDLHYILQLLTHPQL 416 Query: 480 AARFDITEEGLRYLRQWVNESGIRWG-IDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 I + + YL + ++ WG I + G M+ Sbjct: 417 QQ--PIDQNKVPYLIKKLSS---EWGKISSKDRAS--------------------GQQMK 451 Query: 539 SAQGEWQSVLPYDESSG--LIAELVGHLASLLMQLNIWRRGL--AQERPLEEWLPVCRDM 594 + P+ + G E+ L+ + + + E+ Sbjct: 452 ALGDLILEEYPFHQEGGRVSQVEVWETTVPLIYFIQERINLYLSSSQHSYEDLFQNVFSC 511 Query: 595 LNAFFLPDAETEAAMTLIEQ-QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 L F+ E + +T + + + L L + S Sbjct: 512 LEKIFVLSPEETSFITTLRNSLFPTFATSSCSLLFFTDFCLDFLLHF-------HKPSPL 564 Query: 654 FLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ---KPKRGDRSRRD 710 + I +L + IP V +LG N + + FDL+++ + S D Sbjct: 565 YDKPGPYIGSLSSLSLIPKGYVFILGAN-----KTTSSDIFDLLNRTTTHEELAFSSTED 619 Query: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 ++ + FL+ L+S + +L+ISYI + Q N PS + + + + Sbjct: 620 EENFHFLQILVSTKHELHISYISSAAQFN---LPSPFLNHIKETLDLP------------ 664 Query: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPL------ 824 P+ ++ ++E+ + + A + + L Sbjct: 665 ----------VETLPTQPYLSAFFKNKACLHTSQEYNYSLAHAFYSKKALLPSLFIPTVK 714 Query: 825 PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL 884 LP+ + L + + P+ F + + + + F +++QI Sbjct: 715 QVNLPQHLSLNEIIKGIFSPLDLFLKTNYNLRISYPEHLKKQQKLF----PTKHQIEDFW 770 Query: 885 LNALVEQD---------DAERLFRRFRAAGDL--------PYGAFGEIFWETQCQEMQQL 927 V+++ AE LF +R L P + + + + E + Sbjct: 771 NECFVDKEHDLIPSISPHAEELFTYYREKTILLRNGLDKDPKHSPYTVTFSSSIFEERPY 830 Query: 928 ADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPS----------------- 970 + + + + N VQI G + V +GL Sbjct: 831 HESYLF-----PPLSLSFQGNPVQIHGTIHGVCNEGLYLCSIDPGDSLKKTTRTLGSLPE 885 Query: 971 -LLSVAQGMQLWLEHLVYC-ASGGNGESRLF---LRKDGEWRFPPLAAEQALHYLSQLIE 1025 Q ++ ++ V + + +S L E PP + YL +++E Sbjct: 886 TSSEQKQLLERYVALAVLQMSQHLSSDSALIKLTSFNXKENHHPPFS--DPEXYLRKVLE 943 Query: 1026 GYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 Y S P+ +L S W KT D + + ++A+ L + Sbjct: 944 VYHLMSSQPIPLL--SPLCW-KTLDDEEKFHQAVLSAISEEAKNPSLPIF 990 >UniRef50_B1I494 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Peptococcaceae RepID=ADDB_DESAP Length = 1165 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 136/954 (14%), Positives = 258/954 (27%), Gaps = 189/954 (19%) Query: 14 EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANID--FPLPASFIWD 71 + + + P + LV Q + L+ G++ W Sbjct: 19 LEEIRKELRQAPDGPPL---VFLVPEQATFQT-EYALALTPGLSGMFRAQVLSFRRLAWR 74 Query: 72 MFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKL------- 124 +F V P + + +L L ++ +L Sbjct: 75 VFSEVGGAAR------------------PHVGDVGKRMMLARILARRRNELRLFGRAAGQ 116 Query: 125 FQLSSKAADLFDQ---YLVYRPDWLAQWETGHLVEGLGEAQAWQAPL--WKALVEYT-HQ 178 + S A + + YLV P+ L Q ++ G E + QA L + L + Sbjct: 117 YGFSGTLAGVLSELKTYLVT-PEALEQ--AVRMLPGTAETDSLQAKLEDLRLLYTDFERE 173 Query: 179 LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQAL---GKHIE 235 L + L + T V++ G + P L+AL + Sbjct: 174 LAGKYIDPDDYLTLLAARLGESPTLRAA---EVWVDGFAGFTPQEYAVLEALLKAAARVN 230 Query: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 + L DP + + + + R +N +L Sbjct: 231 VALCL------------DPRSGRREDLELFQVTRDTRARLAELARKNGVELERPVELAGP 278 Query: 296 -----GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAV 350 NP LA L R++ + F + Sbjct: 279 PARFRANPALA---HLEREFFR--------RPTKKFAGPPEN------------------ 309 Query: 351 AGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIV 410 + S + EVE +L L + RD+ + Sbjct: 310 -----------------------LRLVAAASRRAEVEGAAREILR-LSRERGWRWRDVSL 345 Query: 411 MVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDV 470 +V ++ Y + VF +P I +R + HP++E S L + + V Sbjct: 346 VVRNLADYHELVATVFADYG----IPCFIDRKRPVRHHPLVELIRSALETVTENWTYDPV 401 Query: 471 LALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR 530 L ++ + L +V GI+ + P + L R Sbjct: 402 FRYLKTDLVPVSRG----DVDLLENYVLAHGIK-------GAKWADPEDWHYRRSDALNR 450 Query: 531 MLLG------------YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 + Y E + + + G + L L L Sbjct: 451 PVPNGTGAPAPSDRDRYLREKVNRIRRRAARHLLDFQRRVQAAGTVRELTAALYDLLSDL 510 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 +EEW A E + ++ + + +A+ Sbjct: 511 DVPGRIEEWSR------EAETEGRLEAAREHRQLWDGVVELLDQVVETLGDEALTPEEYG 564 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 L +D +++ A V + +L R+ + +LG+++GV P + G L Sbjct: 565 RILDSGMDGLQLALIPPALDQVLVGSLERSRNPDIRAAFVLGVSEGVLPGRHGGTG--LF 622 Query: 698 SQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 + + + R + +++YL AL A L++SY + PS Sbjct: 623 TDREREVLLAAGLEVAPDTRRKVYEEQYLVYIALTRAGHYLWVSYPLADE-EGGALAPSS 681 Query: 747 LVQELIDYIGQSHYLPGDEALN-------------CDESEARVKAHLTCLHTRMPFDPQN 793 ++ L + + + L + + DP Sbjct: 682 VIPRLRELFPGLREETLALEPEGTAPGADLPYVTAPGRTLGFLVTRLRDWKSGVTVDPVW 741 Query: 794 YQPGERQSYAREW-------LPAASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWAHP 844 + + W L + + P + + L+ F P Sbjct: 742 WSVFNWFAAHAGWRERCAPVLAGLFYENREPRLDPELTPELYGSRLVVSVSRLEEFRGCP 801 Query: 845 VRAFFQMRLQVNFRTEDS-EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERL 897 F + L++ R PD F L + +L A +E D E Sbjct: 802 FAHFARYALRLKERDVCRLAAPDIGLFFHAALKTF--EDRLREAGMEWDALESA 853 >UniRef50_A4J4E2 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Desulfotomaculum reducens MI-1 RepID=ADDB_DESRM Length = 1155 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 125/675 (18%), Positives = 216/675 (32%), Gaps = 90/675 (13%) Query: 318 ESSQELDAFVDV--TPDNLLHNIQSDILELEN----------RAVAGVNIEEFSRSDNKR 365 E EL+ F T LL + + LE R I + + Sbjct: 241 EPCDELEFFYPTVETYHTLLDMAGALRISLEPPIICGKETPVRFQKDSAIAHLEKYYFRH 300 Query: 366 PLDPLD--SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 PL D ++ C + + EVE ++ + + L+ RDI+V++ D+ +YS I Sbjct: 301 PLQASDAAQGVSLVACANRRAEVEAAAREIIRLC-REEELSWRDIVVVLRDLTNYSDLIN 359 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF 483 +F D +P I ++R HP++E S L + + + V L ++ + Sbjct: 360 TIFN----DHGIPVFIDEKRNVLHHPLVELIRSALEVITQHWAYDPVFRYLKTDLIPVQ- 414 Query: 484 DITEEGLRYLRQWVNESGI---RW--GIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 + + L +V GI RW D R+ L L Sbjct: 415 ---RDDVDRLENYVLAHGIRGNRWNDNRDWTYRRQYTLGEDCDIDDNEAEQLAQLNVVRY 471 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 +A + G++ + L L+ +E W A Sbjct: 472 AAIEHINNF-------SKKVANCGNVRQITTALFELLESLSVAERMEAWAK------EAE 518 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-G 657 I ++ E + A + L L L+ ++ Sbjct: 519 VAGRLIEAKEHAQIWDNVILLLDEIVEAMGEQELNLEEYLQVLEAGLESLKLGLIPPGLD 578 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-----------RGDR 706 V + TL R+ K +LG++DGV P + G L S + G R Sbjct: 579 QVVVGTLERSRNPNVKAALVLGISDGVLPARPVEEG--LFSDYEREALREIGLNLAPGAR 636 Query: 707 SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG--QSHYLPGD 764 + D++YL AL A +L++SY + PS ++Q + + + Q LP + Sbjct: 637 RKLFDEQYLIYTALTRASSRLWLSYPQADD-EGKALMPSPVIQRVKELLPLIQEEILPVE 695 Query: 765 EA---------LNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ--A 813 N S + + A L DP ++ + + A Sbjct: 696 PPCLGGDLAFIANPSRSLSYLAAMLRETVAGRLVDPVWQDVYSWFVQQPQYQESCRRVLA 755 Query: 814 GKAHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD 866 G H LP ++ + + L+RF P F L++ R++ Sbjct: 756 GLYHVNQETSLPPSMGRRLYGSRLRASVSRLERFTTCPFSHFLSHGLKLKERSQ------ 809 Query: 867 TEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQ 926 F L Q L AER+ G L G I E + Q Sbjct: 810 ---FKLAAPDLGQFFHAALKLF-----AERIKALSLDWGQLSRGQIITITGEIVEELAPQ 861 Query: 927 LADRVIACRQPGQSM 941 L + ++ + + Sbjct: 862 LQNEILLSTARHRYL 876 >UniRef50_Q3KL55 Exodeoxyribonuclease V gamma chain n=11 Tax=Chlamydia RepID=Q3KL55_CHLTA Length = 1006 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 171/1094 (15%), Positives = 319/1094 (29%), Gaps = 195/1094 (17%) Query: 6 HSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTL--SQKFGIAANID-F 62 SN +VL A + + P ILV S+ WL+ L + I F Sbjct: 11 FSNYPEVLLAKLAQDLFSI-NQTPMTKRWILVPSSDTDHWLRRELVKASSNHIFMGTHIF 69 Query: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKR 122 +F+ +F + S + ++ + LL + + +L S Sbjct: 70 ASFDAFVKYLFTGT--RLVDLSTPDHITLPLTIYNLLKESSFNSSSEVSYSHLQKLSSIF 127 Query: 123 KLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQP 182 K F F Q +K L P Sbjct: 128 KKF-------YTFSQ-----------------EPSTNNPY------YKNLFAQLKDSYTP 157 Query: 183 RWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTN 242 S P P + I G LP ALGK+ +H + Sbjct: 158 LETI----------FSSILDHPLEYPCSLHIFGYPQLPQHVASFFVALGKYFPVHFYCFS 207 Query: 243 PCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLAS 302 P Y+GD+ +A L R E E + D LLA+ Sbjct: 208 PSAAYFGDLLSDKAMAALSPRIPEPQQETWEKYVLTDRLA----------------LLAN 251 Query: 303 WGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSD 362 + D E + F + LH ++ L+ Sbjct: 252 LAHKSQSLQNFFLDCSVPYE-ELFQPYEKLSSLHIVKDSFFHLQP--------------I 296 Query: 363 NKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFI 422 +++ +I S REV L + +L + ++I ++ +++ Y + Sbjct: 297 DQKLFSNSPQTIFVRQAPSASREVHQLFSLVSQLLHS--GVPAQEIFILSSNLSKYETLL 354 Query: 423 QAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR 482 + +F + +LP ++ Q+ + + +++ S+ D+L +L P L + Sbjct: 355 RGIF-----EPHLPLYLTKTEKTQTRTLKNKLLLVVTFLFSKGSLNDLLRILSHPDLLS- 408 Query: 483 FDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQG 542 + + +L + ++ + + P T + R+L Y G Sbjct: 409 -PLETTKMGFLTHKLTHY-------WKSLSQKDSPLTQL------IHRILDEYPFIDDTG 454 Query: 543 EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL--AQERPLEEWLPVCRDMLNAFFL 600 AE + LL L ++++ EE + L F Sbjct: 455 SVN-----------EAETWEVVVPLLHTLQQVTASYIESKDKTYEEHSRLIFSTLENIFF 503 Query: 601 PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG-PV 659 E A + + + Q + L++ + L + Sbjct: 504 LSTEEHALLVSLSKTLQPFVRSSC--------SLTIFIEFCLDFLSHIPGHSQLYNQPGP 555 Query: 660 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD---RSRRDDDRYLF 716 I +L + IP +LG N + + L+ + D S D+D F Sbjct: 556 FIGSLNSLSLIPKGYTFILGANK----KDHSLDTSFLIDPSLIQEDFLFSSTEDEDNLHF 611 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG-QSHYLPGDEALNCDESEAR 775 L+ ++S + +L+ISY+ S PS ++ L+D + Q +L G + S Sbjct: 612 LQTIVSTKHQLHISYLSSSKN---PALPSSALKHLLDAVPIQEEHLSGKLYAKKNFSSEP 668 Query: 776 VKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLE 835 + + P KA S F TLP + L+ Sbjct: 669 LHQSYQVYYRMAQVSP--------------------LQNKAPSLFKSDTTKTLPSHLSLQ 708 Query: 836 TLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN--------- 886 L + + P+ F + +F + +E LL+ Sbjct: 709 HLIKAFKDPLNFFLSTQHGFSF-HPKALFSKSEKVFPSPHDAKAFWNHLLSSKTPLPTTN 767 Query: 887 ------ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQS 940 + D + + +R P + + Q D + Q Sbjct: 768 YLSAFTESLYTDVQDSVSKRLETLQKDPATTPFSVVFSDQL-----FHDPLHPNDQQVSP 822 Query: 941 MEIDLACNGVQITGWLPQVQPDG--LLRWRPSLL---------------SVAQGMQLWLE 983 + + L + + G + V G L P + ++ +L Sbjct: 823 LLLSLPLKNIHLQGTIHGVCSKGVYLFSMHPGEAFKKTQKTHGFPKDAFELESYLESYLS 882 Query: 984 HLVYCASGGNGESRLFLR---KDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPE 1040 + AS + LR D E PP ++ + YL + I Y + + + Sbjct: 883 LALLQASHLLPKEATILRVTPHDIEPILPPFSSPE--SYLIRAIHLYELLQNQAIPLPSA 940 Query: 1041 SGGAWLKTCYDAQN 1054 ++K A Sbjct: 941 QAWEYIKKTDSASQ 954 >UniRef50_B7JDU3 ATP-dependent helicase/deoxyribonuclease subunit B n=77 Tax=Bacillus RepID=ADDB_BACC0 Length = 1171 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 126/952 (13%), Positives = 286/952 (30%), Gaps = 172/952 (18%) Query: 60 IDFPLPASFIWDMFVRVLPEIPKES-----AFNKQSMSWKLMTLLP-----QLLEREDFT 109 I + +P + ++ F+ ++WK++ + + E Sbjct: 35 ILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFSRLAWKVLQEVGGASRLHIDEAGVHM 94 Query: 110 LLRHYLTDDSDKRKLFQLSSK-----------AADLFDQYLVYRPDWLAQWETGHLVEGL 158 LLR + D +FQ +++ A+ F +Y V + W+ Sbjct: 95 LLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAE-FKRYNVTPSNVYEMWQQLDAHSSS 153 Query: 159 GEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA 218 E Q L + + QL + RA L +++++ + LP ++ G Sbjct: 154 AE----QKLLANKVYD--LQLLYDDFERA-LIGKYLDSEDYLQLLVEKLPQSEYVKG--- 203 Query: 219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFR 278 VY+ + +L ++ R Sbjct: 204 -AEVYIDGFHSFS-------------------------PQELEIVRQLMICGARVTITLT 237 Query: 279 DSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNI 338 E ++ + L + + ++++ I Sbjct: 238 IDEKTLAQPVNELDLFYETTL----------TYEKIKQVAREEKIE-------------I 274 Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDP--LDSSITFHVCHSPQREVEVLHDRLLAM 396 + I +E + RP + ++S+T H + + EVE + + + Sbjct: 275 EKTIPLMEQPRFHSPALAHLEMHYEARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRL 334 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFIS 456 + E RDI V++ + +SY ++ +F +P+ I ++R HP++E S Sbjct: 335 VAE-ENYRYRDIAVLLRNGESYYDVMRTLFTDY----NIPHFIDEKRPMSHHPLVECIRS 389 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAA---RFDITEEGLRYLRQWVNESGI---RWGIDDDN 510 L + + + V + +L R + E + + G+ RW +D Sbjct: 390 ALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPW 449 Query: 511 VRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGL-------IAELVGH 563 + + G +S + + + + + G Sbjct: 450 MYRRYRSLDDTN-----------GMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGT 498 Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEG 623 + + + ++ L + LE + + F D E + ++ +++ Sbjct: 499 VMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHE------QVWEEVMSLLDTF 552 Query: 624 LGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMND 682 + + + LS+ D ++ L+ + + + V I + R K ++G+N+ Sbjct: 553 VEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNE 612 Query: 683 GVYPRQLAPLGFDLMSQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISY 731 GV P G ++S + + R +++++ + + A +KLYIS Sbjct: 613 GVIPAAPMDEG--MLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISC 670 Query: 732 IGRSIQDNSERFPSVLVQELIDYIG---QSHYLPGDEALNCDESEARVKAHLTCL----H 784 + S ++++ + L+ E + V L Sbjct: 671 PLADE-EGKTLLASSFIKKIKRMFPDVIDTFITNDVNDLSRSEQISYVATPEVTLSYVMQ 729 Query: 785 TRMPFDPQNYQPGERQSYA--REWLPAASQAGKAHSEFVQPLPFTLPETV---------- 832 + ++ + ++ + K+ + + Sbjct: 730 QLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYG 789 Query: 833 -----PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNA 887 + ++ F F Q L + R F L+ ++ L Sbjct: 790 DKIKGSVSRMELFNRCAYAHFAQHGLSLRERD---------IFKLDAPDIGELFHAALKR 840 Query: 888 LVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ 939 + A+RL R R DL E +E+ L R I Sbjct: 841 I-----ADRLLRENRTWADLSIKEC-EHLSAVVIEEIAPLLQRQILLSSNRH 886 >UniRef50_Q18AP0 ATP-dependent helicase/deoxyribonuclease subunit B n=9 Tax=Clostridium RepID=ADDB_CLOD6 Length = 1155 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 98/693 (14%), Positives = 224/693 (32%), Gaps = 112/693 (16%) Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDS---SITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 R ++ R N P + +I ++ EVE + ++ ++ D + Sbjct: 281 RFEKVKELQHLERFYNAYPYKIYSNPTENIKIKEFNNLYSEVEEIAREIVHLV-RDKNVR 339 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 RDI + D++ Y + ++F +P I +R +S+P++ IS L + + R Sbjct: 340 YRDITIATRDLNRYDFLVHSIFNEY----NIPNFIDKKREAKSNPIVILIISALEMKNRR 395 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 + E + L ++ I + + L +V +GI+ G + + W Sbjct: 396 YGYETMFRYLKSGLI----GIDNDDINLLENYVLANGIK-GKKWFDEK-----------W 439 Query: 525 RFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELV----------GHLASLLMQLNIW 574 + +T+ L G ++ E + +E + E + + + + + Sbjct: 440 DYRITQSLSGQ---ESEFELELKEKINEIKNRVLEPIVILQEKLRGKNRVKEICRYIYEF 496 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 + +E + +D + + + + I+ + + + + L Sbjct: 497 LLDINMPETIESLIVNFKD------KGELDVANQYSQVWDIVVDILDQMVELMGDEIISL 550 Query: 635 SLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 + D+ + + V + ++ M++ K + L+G DGV+P G Sbjct: 551 EKFIKLITLGFDEYELGLVPPSIDQVLVSSVDRMKNPDTKYLYLVGTTDGVFPLITKDSG 610 Query: 694 FDLMSQKPKRGD---------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 + + G+ ++R ++++L +AL S + L I+Y S + P Sbjct: 611 ILSDNDRESLGNKGIEVDIDSKTRSFEEQFLVYKALTSTSKNLTITYP-ISDHEGKTLRP 669 Query: 745 SVLVQELIDYIG---QSHYLPGDEALNCDESEARVKAHLTCLHTR----MPFDPQNYQPG 797 S+++ L YL + + ++ + +D Y Sbjct: 670 SIIISRLKKIFPNIENKSYLVEENKNTDKDILKKITVKSPTFNELINVIKNYDSDGYNTE 729 Query: 798 ERQSYA---REWLPAASQAGKAHSEFVQPLPFT---------------LPETVPLETLQR 839 E S + + ++ L +T ++ + L++ Sbjct: 730 EINSIWLDIYRYYLKDEIYSSITKKVIKGLSYTNQVHKIEEKKIRSLYKSNSLSISRLEK 789 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSE-IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLF 898 + P F Q L+ R E S PD FI L R+ ++LL + D + + Sbjct: 790 YAECPFAYFIQYGLKAKKRKEYSFTPPDLGTFIHNILDRFS--KELLQDNLTWRDIDEKY 847 Query: 899 RRFRAAG-------DLP---------YGAFGEIFWETQCQEMQQLADRVIACRQPGQSME 942 + +P Y + ++ ++ E Sbjct: 848 IELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIKQGSFEPIDYE 907 Query: 943 IDL--------------ACNGVQITGWLPQVQP 961 + V + G + +V Sbjct: 908 VKFGDNGKYPPIKMVLENGQEVSLIGQIDRVDE 940 >UniRef50_A6LPC3 ATP-dependent helicase/deoxyribonuclease subunit B n=7 Tax=Clostridium RepID=ADDB_CLOB8 Length = 1159 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 91/576 (15%), Positives = 194/576 (33%), Gaps = 63/576 (10%) Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 + I + +IE++ S D SIT + + E+E + + +++ E Sbjct: 276 NAIPYRFKGNLELDHIEKYFFSYPFNEYDKNPESITLYKASNIYDEIERVSKSITSLVRE 335 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLS 459 + RDI V+ +ID Y I +F +PY + + S+P++ S Sbjct: 336 N-GYRYRDISVVCRNIDDYEKIISVIFKDY----NIPYFLDKKIQLLSNPLIVLISSAFE 390 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + + E V L + I + L ++ E G++ G + + Sbjct: 391 ILLKNWSYESVFKYLKSGLT----GIDNSYIDRLENFILEYGVK-GYKWTSKEIVNEKWF 445 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 + ++L+ ME + + +++ +G + + + + + Sbjct: 446 RGNG-ELTDDKVLIAEIMEEIRYPLMTF--HNKVNGKH-----KVKDICSAIYEFLVDVK 497 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 + EW+ ++ + + +E II + + + + S Sbjct: 498 VFDRINEWIKNFEEL------GLEDKVKEYSQVESIVIDIIDQAVDVIGEERLEYSEFFR 551 Query: 640 ELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS 698 L+ E I +A VNI + ++ KV+ ++G+NDGV P G Sbjct: 552 ILSSGFANEEIGIIPVALDQVNIGDIARIKGRDVKVLYIVGINDGVLPASKKEEGLLSDR 611 Query: 699 QKPKRGD---------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 + G+ R++ +++YL AL + + L +SY + PS+++ Sbjct: 612 DRTTLGEVGINLSSTTRNKVFEEQYLLYMALTISSEYLMLSYPMADF-EGKSLRPSIVIS 670 Query: 750 ELIDYIGQSHYLPGDEALNCDES-EARVKAHLTCLHTRMP-----FDPQNYQPGERQSYA 803 + L E+ ++ A + + + FD + +P + Y Sbjct: 671 RIKKIFPNLIEESAIYDLKILENKFGKIIAPIPTFNELIISMRKDFDKEYIEPYWSEVY- 729 Query: 804 REWLPAASQAGKAHSEFVQPLPFT-------------------LPETVPLETLQRFWAHP 844 EW + + L ++ + L+++ P Sbjct: 730 -EWFKNNDEFRDKVKNIFKGLSYSNIGDKVSKNKLRKLYQNDLEKLVFSVSKLEKYAECP 788 Query: 845 VRAFFQMRLQVNFRTEDSE-IPDTEPFILEGLSRYQ 879 F Q L+ R PD F+ E L + Sbjct: 789 FSYFVQYGLKAKNRKVYEFTPPDLGSFVHEMLDSFT 824 >UniRef50_C6CTT5 ATP-dependent nuclease subunit B n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTT5_PAESJ Length = 1175 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 94/632 (14%), Positives = 198/632 (31%), Gaps = 82/632 (12%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 ++ H + + EVE ++ + L RD+ VMV + Y+ +IQ +F Sbjct: 319 LSLHASANRRAEVEAAARDMVRR-AREEGLRWRDMAVMVRNAAEYTDYIQTIFDDYE--- 374 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFD-ITEEGLRY 492 +PY + + HP++E S L + E V + +L ++ E Sbjct: 375 -IPYFLDQKNNTVHHPLVEFIRSALETVLHGWHYEAVFRCIKTELLFPIDGSMSRELFDR 433 Query: 493 LRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDE 552 L +V +G+ G + + + ++E + Sbjct: 434 LENYVLAAGVD-GWKWLDRSRW---------------KPFMQQSLEDEPDTVSEPSAKAK 477 Query: 553 SSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPD---------- 602 +++ L + + L + +++ +L+ D Sbjct: 478 REFQAIMAARE--AIVPPLRRFEQSLKKASNVKDMCEALYKLLDHADAADRLERWSREDS 535 Query: 603 ----AETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-G 657 + + + ++ + + + +P L + L+ +++ A Sbjct: 536 ASGRTQRARSHRQLWDGVMQLLDQLVEMVGDEDMPPELFAGMVETGLENLKLAAVPPALD 595 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK---------RGDRSR 708 I ++ RS K+ +LG NDGV P ++ G ++ + G R R Sbjct: 596 QALIGSMDRTRSGDVKICYVLGANDGVMPMRIQEDGVLTEQERERLAEEGLVMAPGVRRR 655 Query: 709 RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN 768 D+R+L AL +A Q L+IS+ + PS +++++ Sbjct: 656 LLDERFLIYNALTTASQHLWISWAQADE-EGKTLLPSEVIRQVRQLFPGIPVYQKAGEPT 714 Query: 769 CDESEARVKAHLTCLHTRMPF--------------DPQNYQPGERQSYAREWLPAASQAG 814 ++++ + + P + + EW Sbjct: 715 PGMETGDQRSYIEHPQRTLAYLITELRAWRQGSEIAPFWWDVYNWFAIRPEWQDKLQLMN 774 Query: 815 KAHSEFVQP--LPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDS-EI 864 + S Q L T E + + ++RF + P + F L++ R E Sbjct: 775 ASLSFSNQETVLTTTTAEQLYGTKLKASVSRMERFVSCPFQHFAIHGLRLRERQMYRLEA 834 Query: 865 PDTEPFILEGL--------SRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIF 916 PD L R+ + + L R ++ L G F I Sbjct: 835 PDVGQLFHAALSRLAGGVGQRWGSMPEAQIREAAAKAVDELAPRLQSQILLSSGRFQYIA 894 Query: 917 WETQCQEMQQLADRVIACRQPGQSMEIDLACN 948 + + Q A + + Q + L + Sbjct: 895 R-KLKEIVAQAAVILSEHSRRAQFQPVGLEVD 925 >UniRef50_Q8ERW6 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Oceanobacillus iheyensis RepID=ADDB_OCEIH Length = 1166 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 116/628 (18%), Positives = 221/628 (35%), Gaps = 77/628 (12%) Query: 318 ESSQELDAFVDVTPD-NLLHNIQSD---------ILE-LENRAVAGVNIEEFSRSDNKRP 366 E + ELD F + ++L + + IL+ LE + + RP Sbjct: 245 EDASELDLFYQPSQTYHVLKQLAWEAGVPVEDPIILDTLEGNFQNRPYFAHMEKYFDSRP 304 Query: 367 LDPLDSS--ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQA 424 + I P+ EVE + ++L ++ D RDI +++ + Y I+ Sbjct: 305 APAYEGEVPIEIFEAVHPRAEVEGIAQQVLELI-RDNRYRYRDIALLIRQPEVYHDLIET 363 Query: 425 VFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA---A 481 +F LP I ++R HP++E S+L + + ++ + +L ++ Sbjct: 364 IFNDYE----LPVFIDEKRPMLHHPLIELIRSILEVVQGNWRNDAIFRVLKTGLIPSADD 419 Query: 482 RFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQ 541 F +T + + L +V E GIR G++ W++ R A + Sbjct: 420 EFPLTMDSIDQLENYVIEFGIR----------SRHQWIGENKWKYQRFRGFDSSAQTDRE 469 Query: 542 GEWQSVL--PYDESSGLIAELVGHLASL--LMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 E Q + D+ IA + L + + L I +E + + L V R + Sbjct: 470 RELQESMNRYRDQVISAIATVDEQLRAATTVKDLCIAMYQWLEELKIPDQLEVTRKYYDD 529 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA- 656 LP+ E + + E + + + LS+ + L ++ + S + Sbjct: 530 QGLPEKGREQE--QVWDAVIQLFDEMVEIAGEEKMDLSVFQVALDAGIETLQFSHVPPSM 587 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF-------DLMSQKPKRGDRSRR 709 + + T+ R + LLG+N+G++P + G L K D S R Sbjct: 588 DHIIVGTIDRSRMSNIRCAFLLGVNEGIWPMKPTSDGMIDEAERLLLEQNGLKLADTSER 647 Query: 710 D--DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG--QSHYLPGDE 765 DD + A A+ +L ISY S ++ + PS L+ + + ++H L D Sbjct: 648 QLLDDWFYMYLAFTVAKDRLKISY-LLSDEEGKAKMPSQLIHRVEELFPATKNHILLQDP 706 Query: 766 ALNCDE---------SEARVKAHLTCLHTRMPFDPQNYQPGERQSYA-------REWLPA 809 + S + + A L P DP ++ + L Sbjct: 707 EDESNTRRFVSTELKSRSALTAQLAKFKKGYPIDPIWWEVYQWYVEHHPQGGTTHRVLQG 766 Query: 810 ASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 K S + P+ + + L+ ++ + F + L + R Sbjct: 767 LHYENKPESLQKDTVEQLYPKRIQASVSRLETYYRCSYQHFAKYSLNLEERRTYK----- 821 Query: 868 EPFILEGLSRYQINQQLLNALVEQDDAE 895 L+ Q+ + L + E AE Sbjct: 822 ----LDAPDIGQLFHEALKKITEWIHAE 845 >UniRef50_B9E0C6 ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Clostridium RepID=ADDB_CLOK1 Length = 1150 Score = 305 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 98/644 (15%), Positives = 204/644 (31%), Gaps = 90/644 (13%) Query: 311 IYLLSDLESSQELDAFVDV---TPDNLLHNIQSDILELEN---------RAVAGVNIEEF 358 + L + + +D F+ + + L +++I+ + R ++ Sbjct: 230 MDALGEYSERESIDLFLPIKITERNILQIAEKNNIIYQKPVNLRCSPCYRFKNSTALQHL 289 Query: 359 SRSDNKRPLDPLDSS---ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 S P + S I + E++ + ++ D L +D+ V+ D+ Sbjct: 290 QHSLFSYPYKNYEKSTEDINIFKALNKYTEIDYIARDIVKAC-RDKNLRFKDMAVVTGDL 348 Query: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 D Y I+AVF +PY I +R + ++ IS + + + E V L Sbjct: 349 DEYENLIKAVFNQYD----IPYFIDKKREIIHNQIVILIISAVEILAKNWSYESVFRYLK 404 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 +L D+ + + L +V +GIR W F + G Sbjct: 405 TGLL----DLEFDDIDILENYVLANGIR-----------GRQWLDTKPWSFKIN---YGN 446 Query: 536 AMESAQGEWQSVL-PYDESSGLIAELVGHL----------ASLLMQLNIWRRGLAQERPL 584 E E Q L + + E + L + +L + L + Sbjct: 447 FKEDDSEEEQEYLNKINCIRDKVREPILKLSNDIKGKKKGRHICEELYNFLCELKIPEKV 506 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQR 644 EE + R+ + + I ++ + + + + + + L Sbjct: 507 EELIIEFRN------TDRLDKANEYSQIWDIVVDVLDQIVDVLGEQSFGMEIFNEALEIG 560 Query: 645 LDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK- 702 Q I A V + + ++S + + G+NDG++P ++P G + + Sbjct: 561 FSQYEIGVIPPALDQVLVSNITRIKSYNISALYIAGVNDGIFPVTISPEGIFTDQDRDEL 620 Query: 703 --------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 RSR ++++L L + L ++Y S ++ + PSV++ + Sbjct: 621 KQNGLEIAPNTRSRAFEEQFLIYATLTIVDKYLTLTYS-MSDEEGKAKRPSVVISMIKKI 679 Query: 755 IGQSHYLPG-DEALNCDESEARVKAHLTCLHTRMPFDPQNYQP----GERQSYAREWLPA 809 + +A + V + + + +N W Sbjct: 680 FPKLQEKSNLLDASGYEGGIEAVNSPKVTFNMLISNIRRNLGHRENINSLWIDVYRWYRE 739 Query: 810 ASQAGKAHSEFVQPLPFTLPETV----------------PLETLQRFWAHPVRAFFQMRL 853 K + + + + L++F P F Q L Sbjct: 740 HEIWNKRLDTVLGAFYYNNEIKISDLVKIRRLYGKHLNMSVSRLEKFAQCPFGYFVQYGL 799 Query: 854 QVNFRTEDSEI-PDTEPFILEGLSRYQINQQLLNALVEQDDAER 896 +V R S PD F+ L R+ I L + ++ + Sbjct: 800 KVKDRKMYSLSAPDLGSFMHGILERFSIG--LKQKSLTWENVDE 841 >UniRef50_Q0SWW7 ATP-dependent helicase/deoxyribonuclease subunit B n=9 Tax=Clostridium perfringens RepID=ADDB_CLOPS Length = 1158 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 87/578 (15%), Positives = 200/578 (34%), Gaps = 61/578 (10%) Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 DI +IE + + ++S+ + ++ E+E + +L ++ + Sbjct: 273 DIPYRFKENKELAHIERQLYAYPFKQYRGENNSLRLYRANNNYDEIEFVAKDILRLV-RE 331 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 +DI V+ ++D+Y I A+F +PY I + S+P++ S + + Sbjct: 332 KQYRFKDISVICREVDNYEKVISAIFAEYE----IPYYIDKKIDIASNPLIVFINSAVDI 387 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGL-RYLRQWVNESGI---RWGIDDDNVRELEL 516 + E + L ++ I L L +V GI +W + N L Sbjct: 388 ISKNWTYESMFKYLKTGLIKEFRGIEGAELIDELENYVLAYGIKGKKWMEEWVNYSSSIL 447 Query: 517 PATG-QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 + L R+ ++++ + + L + L + Sbjct: 448 KEEEISEENKQRLERL---------NDIRETIVTPLDEFNKECKGKKTLKEFAIILYEFL 498 Query: 576 R-GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 L +++++ ++ N + + + + ++ + + + + L Sbjct: 499 DSKLNIMDTIDKYVEYFKE--NDMAI----EAKEYSEVRDIFIDVLEQAVDVLGNEVMDL 552 Query: 635 SLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 L L Q + +A VNI + ++S K + ++G+NDGV P G Sbjct: 553 DEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPSASKEEG 612 Query: 694 FDLMSQKPKRGD---------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 + + + R++ ++++L A A++ L ++Y + + P Sbjct: 613 ILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPLADF-EGKSQRP 671 Query: 745 SVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQP---GERQS 801 S++V L + + + ++ ++ A + L+ M +NY + Sbjct: 672 SIIVHRLKKILP-NVKEESEGFKLVNDKYDKISAKIPTLNELMIAIRKNYDGAEIDDYWK 730 Query: 802 YAREWLPAASQAGKAHSEFVQPLPFTLPE-------------------TVPLETLQRFWA 842 Y +W + + + L +T E ++ + L+R+ Sbjct: 731 YVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLSVSRLERYAQ 790 Query: 843 HPVRAFFQMRLQVNFRTEDSEI-PDTEPFILEGLSRYQ 879 P + Q L+ R PD F+ E L + Sbjct: 791 CPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFT 828 >UniRef50_B0SIS7 Exodeoxyribonuclease V, gamma subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS7_LEPBA Length = 1099 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 157/989 (15%), Positives = 326/989 (32%), Gaps = 160/989 (16%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKF--GIAAN 59 + + L + + + +++E++++P +++V +T + WL++ + + ++ N Sbjct: 3 IHYFAGLHLHEITSELTKQIKKEQIENPLRMPLVVVPNTNLIPWLKLNIPKYNDSQLSIN 62 Query: 60 IDFPLPASFIWDMFVRVLPEI---PKESAFNKQSMSWKLMTLLPQLLER--EDFTLLRHY 114 I+F I M L ++ S L + ++ ++ Y Sbjct: 63 IEFTFLEKAILKMIFTSLQIPAWAESVEFYDYNSFKKDCFRYLYENQTSLFQNHPEIKTY 122 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQW---ETGHLVEGLGEAQAWQAPLWKA 171 + S+ KL+ LS F Y + R +W+ QW E ++ L W Sbjct: 123 I---SELPKLYYLSDLLTKYFKDYELNRSEWIHQWLGNEKSNIPNQLTSDPYWD------ 173 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALG 231 +E LG + NLY L + +S L Y+ L+ + Sbjct: 174 -LEKEIYLGTNDGGKKNLYYYL------NKGKDLSLQGNLHFFCLSNLSGTYINFLKTVS 226 Query: 232 KHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291 K NP + + + +N + N Sbjct: 227 K---------NP-------------------NANLNIYIYQFHNGKVIGQNPEKTKNYLS 258 Query: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVA 351 + LA +++ L E+S +L ++S +LE + + Sbjct: 259 KFAKPQSYLA------KEFSNLTKQKETS-------KYASGGMLAKLKSILLEEQVKEEN 305 Query: 352 GVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT-LTPRDIIV 410 + D ++ S RE+E + +L + L+ D + Sbjct: 306 YL----------------NDQTVRVWNAPSEYREMESIAHDILHKISTSKGNLSLLDFAI 349 Query: 411 MVADIDSYSPFIQAVF----------GSAPADRYLPYAISDRRARQSHPVLEAFISLLS- 459 +V + + Y I+ VF P + L Y++SD A+++ + + F L Sbjct: 350 LVPNTNDYKAAIEWVFHGGIYTTQRIDETPTLQRLNYSLSDLVAKETSLLYKVFEILFQS 409 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITE-EGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 + R ++++ LL P++ + I + + Q ++ G + + Sbjct: 410 FLNKRIQKDELIHLLQNPLITGKNKIDSIDQTHSVIQLLDSLGSLYDENK---------E 460 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQ--SVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 +T FG+ R +L M W V+ + + + + L + Sbjct: 461 ENPYTISFGVKRAVLS-VMSDEATTWSHMGVITDPLAKEDSVLYLNLIWEEIKSLQSFFE 519 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 + P+ E + N F ETE + +W IA+ ++ Sbjct: 520 SEFLQLPINERFKAFQTKWNQFLKFSEETENE-RIYLTEWLGNIAKWCDTEWNHVTDFLQ 578 Query: 637 LRDELAQRL--DQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 + + + +L + I L PMR IPF + ++G+ +G +P F Sbjct: 579 FLQLQTEEIFSNIPTQKGNYLTEGITISLLQPMRPIPFSHIYIVGLGEGKFPGSKDVSRF 638 Query: 695 DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 +L K D +R + L E ++SA+ + SY+G++ ++ E P + E++ Sbjct: 639 NLRKNDSKPWDLNRIEIQESLLWETILSAEDSITFSYVGKNTLEDKEFEPCSSLFEVMHS 698 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYA-----REWLPA 809 +G P+ SY +++ Sbjct: 699 LGIERATEI---------------------PLTPYSRFY-DREILHSYDYSRNLKQYRSL 736 Query: 810 ASQAGKAHSEFVQPLPFTLPE-----TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 + K ++ LP E + + ++ + +P+ + + L F ++ E Sbjct: 737 NTDLPKPDFTSLEDLPLPHSEWKFKKQISIASIASAFKNPILPYIKENLG--FMEDEEET 794 Query: 865 PDTEPFILEGLSRYQINQQLLNALVEQDDAE---------------RLFRRFRAAGDLPY 909 EPF L + + L E E + PY Sbjct: 795 SLEEPFYFNALETFLFKSKFLPLFTESLAKEETWPWDKDTIKQKINEFSAIAENKAEFPY 854 Query: 910 GAFGEIFWETQCQEMQQLADRVIACRQPG 938 GAF + ET +E+ ++A+ + Sbjct: 855 GAFHLVTTETLLEELTEIAEVYKTLKGEL 883 >UniRef50_A1HTK8 UvrD-like DNA helicase, C terminal n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTK8_9FIRM Length = 1160 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 173/1023 (16%), Positives = 305/1023 (29%), Gaps = 196/1023 (19%) Query: 14 EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMF 73 + + + P +++V Q + L+ G++ + + + Sbjct: 19 LDAIRERLRQAPDGPPL---LLIVPEQATFQ-AERELAATPGLSGFVRAHVMG--FRRLA 72 Query: 74 VRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQ------- 126 RVL E +A P L + +LR LT+ D+ KL Sbjct: 73 YRVLAETGGGAA--------------PHLTDLGKRLVLRRLLTERRDELKLLGQAAAQRT 118 Query: 127 LSSKAADL---FDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPR 183 + A L F Y + PD +A L A L+KA ++ Sbjct: 119 FADTLASLIWEFKTYGIA-PDKVAAASERLGATPLAAKLHDLALLYKAFEDFLQGRYTDP 177 Query: 184 WHRANLYQRFIETLESATTCPPGLPS--RVFICGISALPPVYLQALQAL---GKHIEIHL 238 L +A L V++ G P L+AL K + + L Sbjct: 178 ED--------CLRLLAAKIPAATLTRGAEVWVDGFEWFTPQEYGVLEALLSAAKDVTVTL 229 Query: 239 LFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 P D A L R + R Sbjct: 230 CLDEP------DAPHHADETALFHRSWKTRQSLRARA----------------------- 260 Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 A G R+ + Q+ IL R Sbjct: 261 --ARLGVSCRE--------------------EVLTAVRRFQAPILAYVER---------- 288 Query: 359 SRSDNKRPLDPLD-SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 +D + P D +T + + EVE + ++ + D RD+ V++ D+D Sbjct: 289 YANDARPPAWRGDKQGLTIAEAANRRTEVEGIARDMIRLC-RDEGYRWRDMAVLLRDMDG 347 Query: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Y ++ V +P+ +R HP+ E S L + R+ E V L Sbjct: 348 YIDLVETVLADYD----IPFFSDRQRPAVHHPLAELIRSALEVVTERWAYEPVFRCLKTD 403 Query: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + F ++ + + L +V E GIR T W F + R+ L Sbjct: 404 L----FPLSRDEIDLLENYVLEFGIR-----------GSRWTKDEPWTF-VRRLSLD--- 444 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASL-------------LMQLNIWRRGLAQERPL 584 E A+ + + D + + L L L L Sbjct: 445 EDAEPDERQQAYLDRINAIRCRAAKPLIRFEQALTQAETVREMTAALYGLLADLDVPATL 504 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQR 644 E+W D E E I ++ + + + L+ + + Sbjct: 505 EKWAAAAST------ARDPEQEREHRQIWHSIVDLLDQIVDTCGEQPMSLTDYAAVVNEG 558 Query: 645 LDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK- 702 L+ + V + L R + KVV L G+NDGV P + G L+S + + Sbjct: 559 LEGLTFNIIPPGLDHVTVTPLTRAR-LAAKVVYLPGVNDGVLPERGREEG--LLSDRERA 615 Query: 703 -------RGDRSRRDD---DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 +R D ++++ AL A +L++S+ + PS++++ L Sbjct: 616 ELASLGLELGPTREADVFAEQFVVYTALTRASDRLWVSFPLADA-EGKALAPSLIIRRLK 674 Query: 753 DY--IGQSHYLPGDEALNCDE--------SEARVKAHLTCLHTRMPFDPQNYQPGERQSY 802 + I LP + ++ S A + A L P Sbjct: 675 ELSGIEALKPLPVEPPPGAEDEYIVHPRRSLAALAAGLRPALAGQPVGTLWRDLYNWAVA 734 Query: 803 AREWLPAASQ--AGKAHSEFVQPLPFTLPETV---------PLETLQRFWAHPVRAFFQM 851 + + AG H Q LP L + + + + F A P + F + Sbjct: 735 RPDLAADLRRAVAGLFHRNQEQALPPELAQRLYRRQGKLRGSVTRFEGFQACPFQHFARY 794 Query: 852 RLQVNFRTEDSEI-PDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYG 910 L + R PD F L ++ + +E++ RR++ GD+ Sbjct: 795 GLALKERAVAQLKAPDFGQFFHAALRQFGLR-------IEKELTADNQRRWQRWGDVQDE 847 Query: 911 AFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPS 970 G + + +L + ++ Q I V+ D R++P Sbjct: 848 EIGPLCEAIVQELAPKLQNEILLSSA--QYRSITRRLQRTLQRTVTRLVRLDRRSRFKPV 905 Query: 971 LLS 973 L Sbjct: 906 ALE 908 >UniRef50_B2A611 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=ADDB_NATTJ Length = 1186 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 164/1074 (15%), Positives = 320/1074 (29%), Gaps = 202/1074 (18%) Query: 7 SNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPA 66 S + + + ++ DP + LV Q ++ + ++ I+ Sbjct: 12 SGKTSYIIDSITEQLKAAPDGDPI---IFLVPEQATFQ-MEQAILRRSDIS-GFSRLHIL 66 Query: 67 SFIWDMFVRVLPEI-----PKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDK 121 SF + +VL E S K+ + ++ L ++D +L Sbjct: 67 SFQ-RLSQKVLEEQGGIAKADLSDTGKEMIIKNIL-----LQRKDDLEILEKVAVKSG-- 118 Query: 122 RKLFQLSSKAADLFDQYLVYR--PDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQL 179 S K + L + +Y P+ L Q + L + + + + Sbjct: 119 -----FSEKLSRLISEARMYEITPEMLEQISQELDLIHLKQKL-------QEISQVFTDY 166 Query: 180 GQPRWHRANLYQRFIETLESATTCPPGLPSRV--------FICGISALPPVYLQALQALG 231 H+ +Q + L A G + + +I G S P L+ L+ L Sbjct: 167 ETFLQHQGYHHQE--DRLSKAGQKMEG--NNISFLAGSTCYIDGFSGFTPQELKLLEGLL 222 Query: 232 KHI-EIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSD 290 I L T P + G I D +L + +E ++ ++ Sbjct: 223 TKCSNIELALTLP-PQFTGKIDDELHLFHPTLKTYNQVWELAVNNDIEIKKSKHFPNENE 281 Query: 291 GEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAV 350 + + L R Sbjct: 282 EHR-------------------------------------SASSL-----------PRFK 293 Query: 351 AGVNIEEFSRSDNKRPLDPLDSS---ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 + + K ++P DS ++ + + E++ + + +L D + +D Sbjct: 294 DNPALAHLEKEWGKNKINPYDSEPTGLSIVEGTNLRNEIDKIAREI-KLLVRDHGMRYKD 352 Query: 408 IIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 I V+V +++SY P I+AVF +P+ + + HP++E S + S + Sbjct: 353 IAVIVRELESYEPVIKAVFNDY----KIPHFLDRKEPVHHHPLVEFLRSSVETVISNWDY 408 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT-------- 519 E + +L +L I+ E + + +V GI G D + A Sbjct: 409 EPLFRMLKTGLLP----ISSEEIFQVENYVLAHGIS-GKDWKKQGKWNFIANFDLERENI 463 Query: 520 -----------GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL--AS 566 ++ + G R L +G +S + AE L Sbjct: 464 APSNRNKQYLSEINSIK-GKVRDTLLEFDSKLRGINKSESLSAQFKNQEAEEDNLLSVRE 522 Query: 567 LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGA 626 + L L E LEEW L A D + ++ + + Sbjct: 523 ISTYLWELIEQLQIEYQLEEWS------LEAEERKDFVEMQLHNQLWDTVIDLLDQMVTF 576 Query: 627 QYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 V LS + L ++ V + T R KV+ + G++DG+Y Sbjct: 577 LGEQKVTLSEYLQIIESGLANIKLGLLPATLDQVLVGTADRSRYHEIKVLFMAGVSDGLY 636 Query: 686 PRQ-------LAPLGFDLMSQKPK--RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSI 736 P + L + + ++YL L QKLY+SY Sbjct: 637 PAKIDDDGIIDDRERITLRQHDVEFAPTTEQKLYQEQYLIYNVLTQPSQKLYLSYPAAD- 695 Query: 737 QDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESE------------ARVKAHLTCLH 784 + PS ++ ++ + + ++ DE +K H Sbjct: 696 SEGRTMSPSTIISDIQEMFPELFQEYQNDGPENDEDFRQYIIDGKKAVSNLIKLINKVGH 755 Query: 785 T------RMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV--PLET 836 + Y+ + A + + P + + Sbjct: 756 PEKLAEDKQQLLAYLINEHPDLFYSTPEIKALDYKKSLSPLTQEVIDKLYPNKIATSVSG 815 Query: 837 LQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT-------------EPFILEGLSRYQINQQ 883 L+ F P R F + L++ R P + + L+ +++ + Sbjct: 816 LESFCQCPFRHFAEQNLRLKEREYFRLEPASLGLFYHAGLKLFWDKLQENNLTWHKLKTE 875 Query: 884 LLNALVEQDDAERLFRRFRAAGDLP---YGAFGEIFWETQCQEMQQL------------- 927 ALV + E L R + L Y F + E + ++ L Sbjct: 876 EREALVSEI-VEVLSERLKNRILLASERYKYFKKKLHELLSRAVEVLSWYSDDKGFYPVG 934 Query: 928 ADRVIACRQPGQSMEIDLAC---NGVQITGWLPQVQ---PDGLLRWRPSLLSVA 975 ++ +P ++E++L VQ+ G + ++ DG L R Sbjct: 935 SEIGFGKDEPLSTLELELPSFPNKKVQLKGRIDRIDTGKKDGDLYLRVIDYKGK 988 >UniRef50_B0KDB8 ATP-dependent helicase/deoxyribonuclease subunit B n=10 Tax=Thermoanaerobacteraceae RepID=ADDB_THEP3 Length = 1149 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 83/571 (14%), Positives = 188/571 (32%), Gaps = 72/571 (12%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 + +E+ S + +I+ + EVE ++ ++ D L Sbjct: 279 EKNEEMAFLEKHLFSYPYKIYSKDTKNISLFKAVNVYSEVEETAREIIRLV-RDENLRYS 337 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 DI+V D+ Y I+ +F +P+ I + +++P++ SL + + Sbjct: 338 DIVVTARDLKRYHKLIKTIFSHYG----IPHFIDLKLDIKNNPIIVYITSLFEIYLKNWS 393 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 E V L ++ +E + +L +V +GI+ G + + +++R Sbjct: 394 YESVFRHLKTGFT----NLNKEDISFLENYVLANGIKGGKWKEEWK---------YSFRN 440 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLA----------SLLMQLNIWRR 576 L ++ Q E +++ + I+E + L + Sbjct: 441 RLDKLF------DDQDEKEALEKVNTIKNGISEPLNKFYKDFSNANTVREACEILYNFLV 494 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 + +E + ++ + E + I ++ + + + + + L Sbjct: 495 ERDIPQRIENLIREFKE------NKEFEIANQYSQIWDIVVDVLDQMVEVMGEEKINIDL 548 Query: 637 LRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 L + +I A V + ++ M+S K + ++G NDG++P G Sbjct: 549 FSKILDIGFEAYQIGSIPPALDEVLVTSVDRMKSHNAKALFVIGANDGIFPASSFEEGIL 608 Query: 696 ------LMSQKPKRGDRS---RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 +++ DR + ++++L AL S + L ISY + PS+ Sbjct: 609 TDEDRQILTSYEVELDRDTKAKVFEEQFLVYTALTSTSKFLRISYPIAD-HEGRSLRPSI 667 Query: 747 LVQELIDYIGQSHYLPGDEALNCDE-----------SEARVKAHLTCLHTRMPFDPQNYQ 795 ++ Q ++ DE + + + + Sbjct: 668 IISRFKRIFPQITQFSNVIEMDTDEENLHRVSSPDPTFNEMIKSFKEWDIKDKINSLWLD 727 Query: 796 PGERQSYAREW-------LPAASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWAHPVR 846 S W L + + + + + + + L+++ A P Sbjct: 728 VYNWYSNKEVWRKRIEKVLEGFNYSNQVRVIPSAKIKRLYKDEINFSVSRLEKYAACPFA 787 Query: 847 AFFQMRLQVNFRTEDS-EIPDTEPFILEGLS 876 F Q L+ R S + PD F+ L+ Sbjct: 788 YFVQYGLKAKERKIYSFDPPDLGIFMHNVLN 818 >UniRef50_Q24WW7 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Desulfitobacterium hafniense RepID=ADDB_DESHY Length = 1220 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 114/681 (16%), Positives = 211/681 (30%), Gaps = 91/681 (13%) Query: 350 VAGVNIEEFSRSDNKRPLDPLDSS-------ITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 ++E F + + D S I + + EVE + L L + Sbjct: 283 AGLKHLERFYNAYPTQTFPGGDDSTAPDPLGIALFPAANKRAEVEGVARE-LRRLAREEG 341 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 T RD V+ D+ Y I+ VF + +PY + +R HP+LE +S + Sbjct: 342 RTWRDCSVVTRDLPGYQGIIEQVFNA----HEIPYFLDHKRPVIHHPLLELLLSAIETVQ 397 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 + E + L F +++ + L + GI N P Sbjct: 398 KDWAYEPLFRCLKTDF----FPCSKDRIDRLENYCLAYGIHGSAWKGNRSWSYYPDPNHK 453 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 GL + Q++ P+ E+ G +A + + L Sbjct: 454 EETAGLNE-TRQIIYDLFSPFDQAIRPHPEAGGPSV----TVAQITEAIYELLIRLKVPE 508 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 L+EW D I ++ E + + + LS L Sbjct: 509 HLQEWAEAAHS------RGDLAEAQLQNQIWDAVIQVLDELVAGLGEEVMDLSDFAMILT 562 Query: 643 QRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG-FDLMSQK 700 L+ ++ V + +L R+ V+ LLG NDG+ P + + G FD + + Sbjct: 563 SGLENLQLGLIPPGYDQVLVGSLDRSRNPETAVLFLLGANDGILPGKPSDEGVFDELERL 622 Query: 701 PK--------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 + + +++Y AL A+++LYISY + S ++ L Sbjct: 623 RLESKGIMLAPKGKVQVYEEQYFIYTALTRAREQLYISYPLTDE-EGRGLTVSPVIHRLK 681 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYARE----WLP 808 ++ L+ DE E H L Q + G S + W Sbjct: 682 MIFPGL----PEKYLSLDEEEPGALPHPYALLPAYALHLQKLRQGSSLSPLWQAIRLWFL 737 Query: 809 AASQAGKAHSEFVQPL-----PFTLPETV-----------PLETLQRFWAHPVRAFFQMR 852 + + A + L LP+ + + L+ F P F Q Sbjct: 738 SQTAAFPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRLVTSVSRLELFARCPFAHFAQYG 797 Query: 853 LQVNFRTEDSE-IPDTEPFILEGLSRYQI-----------NQQLLNALVEQDDAERLFRR 900 L++ R+ PD F L Y I + + + + AE + + Sbjct: 798 LKLKERSNYRLSPPDMGQFFHAVLHDYAIALRERGLDWGELSKEQSWQLVNETAEPIALQ 857 Query: 901 FRAAGDLPYG---AFGEIFWETQCQEMQQLADRVIAC-------------RQPGQSMEID 944 + L T ++ L + ++ +E+ Sbjct: 858 LQNKILLSNARYRYLTHKLKRTVHHAVRVLGEHARQGVFLPMELEVKFGPQEALPPLEVP 917 Query: 945 LACNG-VQITGWLPQVQPDGL 964 L+ + + G + ++ L Sbjct: 918 LSGGNSLLLRGQIDRIDGAVL 938 >UniRef50_UPI0001850BBB ATP-dependent nuclease, subunit B n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850BBB Length = 1158 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 97/708 (13%), Positives = 201/708 (28%), Gaps = 107/708 (15%) Query: 336 HNIQSD--ILELENRAVAGVNIEEFSRSDNKRPLDPLDSS--ITFHVCHSPQREVEVLHD 391 IQ D I+ I R RP P + S +T +P+ E+E + Sbjct: 260 SQIQQDPMIVLDTQARFKSQTIAHLERHWETRPSVPSNESSYVTIVEAANPRAEIEGIAR 319 Query: 392 RLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVL 451 + L + RDI + + + Y I+ +F +P+ + +R +HP++ Sbjct: 320 EI-RRLAREEGYRYRDIALFLRNSADYGDIIETIFYDYD----IPFFMDQKRTMLNHPLI 374 Query: 452 EAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT------EEGLRYLRQWVNESGIRWG 505 E S L S + E V + +L F + E + L +V GI+ Sbjct: 375 ELVRSTLETIHSHWRYEAVFRAVKTDLL---FPLDQSPKKLREKMDRLENYVLAYGIK-- 429 Query: 506 IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESS----------G 555 T + WR+ R L E + +E G Sbjct: 430 ---------GSSWTNKDRWRYRRFRGLELTDSPQTDEEREKEHEINELRLFISAPILRLG 480 Query: 556 LIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQ 615 + + + L + L + LE + D D Sbjct: 481 RRMKRGNTVRDYCISLYQFLEELDIPQKLERFAQSAND------RGDVIAAREHDQAWNA 534 Query: 616 WQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKV 674 ++ + + + + D L ++ + S + V + L R + Sbjct: 535 VVDLLDQYVEILGDSKISVKRFSDILDAGIETMKFSLVPPSNDQVIVADLELSRLANIRA 594 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS---------RRDDDRYLFLEALISAQQ 725 ++G+NDGV P + G + +R + +D+ ++ +A + + Sbjct: 595 GFVIGVNDGVLPSKFQDEGILSAEDRTSFANRGVQLAPTSTVKLEDEEFVAYKAFTTPSE 654 Query: 726 KLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN-------------CDES 772 +LYISY + + S ++ + + + + + S Sbjct: 655 RLYISYALAND-EGKALMSSPYIKRINELLPNIRTQLVVQEPSELHVKFQKSYASHPTVS 713 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAH--SEFVQPLPFTLPE 830 + V L P + + + + + + L + Sbjct: 714 ISYVTTQLQLGLRGYQVAPVWWDVYNYYMKSSHYQEKVHRILTSLFYQNRTKKLSEETSK 773 Query: 831 TV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDS-EIPDTEPFILEGLSR----- 877 + + ++ F + P F L++ R E PD L Sbjct: 774 ELYGESILGSVSRMELFNSCPFSHFASHGLKLREREMYRLEAPDIGELFHGALKWISDMM 833 Query: 878 ------YQINQQLLNALVEQDDAERLFRRFRAAGDLP---YGAFGEIFWETQCQEMQQLA 928 ++ + + Q E L R + L + + L+ Sbjct: 834 NDQNRSWKDLNKADCRKLAQHAVEVLAPRLQKQILLSSNRHHYIKRKLELILERASLVLS 893 Query: 929 DRV-------------IACRQPGQSMEIDLACN-GVQITGWLPQVQPD 962 ++ L +++ G + +V Sbjct: 894 EQAKVSGFTPVGLELGFGPNGELPPFAFTLKNGIKMELQGRIDRVDKG 941 >UniRef50_B8DF43 ATP-dependent helicase/deoxyribonuclease subunit B n=16 Tax=Listeria monocytogenes RepID=ADDB_LISMH Length = 1157 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 84/701 (11%), Positives = 200/701 (28%), Gaps = 100/701 (14%) Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPL---DPLDSSITFHVCHSPQREVEVLHDRL 393 ++ + LEN+ ++ + + ++ H ++ + E+E + + Sbjct: 263 QVEENKFFLENKRAKTESLAFLANTWGHNKFMSFKNEPQNLKIHQANNRRAEIEGIAREI 322 Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEA 453 ++ RDI ++ ++ Y + V + +P I +RA HP +E Sbjct: 323 RQLVLN--GYRYRDIAILTRNLGDYDVLCETVMEAY----NIPTFIDKKRAMAKHPFIEF 376 Query: 454 FISLLSLPDSRFVSEDVLALLDVPV---LAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 S L + E + + + + + L +V E+GI+ + Sbjct: 377 IRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNKWKWE- 435 Query: 511 VRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL------ 564 + W + R L + E +E LI + L Sbjct: 436 ---------KEGDWVYRKIRGLSTNVLPQTDEEIHMQSIINEMRSLIVNPLATLELNLRK 486 Query: 565 ----ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAII 620 + L + + LE W + E A++ Sbjct: 487 AKTGMEFALALYHYLEQVNAVERLESWRQRAEE------QGYLELAREHEQAWSSISALL 540 Query: 621 AEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLG 679 E + + + L + + LD S + V + + + + KV+ +G Sbjct: 541 DEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIG 600 Query: 680 MNDGVYPRQLAPLGFDLMSQK---------PKRGDRSRRDDDRYLFLEALISAQQKLYIS 730 MNDGV P + G + K ++ ++ L + + KL++S Sbjct: 601 MNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLS 660 Query: 731 YIGRSIQDNSERFPSVLVQELID---------YIGQSHYLPGDEALNCDESEAR----VK 777 Y + S ++++ Y+ L E + S+ + Sbjct: 661 YPAADE-EGKVLSESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLT 719 Query: 778 AHLTCLHTRMPFDP-------QNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 + L ++ + A++ L + K E Sbjct: 720 SQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGE 779 Query: 831 TV--PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT--EPFI-----------LEGL 875 T+ + +++F++ + + Q L++ R E F L Sbjct: 780 TIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMGEIFHGAMEWISAELKRNNL 839 Query: 876 SRYQINQQLLNAL--VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRV-- 931 + ++ + + + + + L ++ Sbjct: 840 DWGNLTEEECKQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKS 899 Query: 932 -----------IACRQPGQSMEIDLACN-GVQITGWLPQVQ 960 + ++I L + + + G + ++ Sbjct: 900 SAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRID 940 >UniRef50_A7GAI7 ATP-dependent helicase/deoxyribonuclease subunit B n=15 Tax=Clostridium RepID=ADDB_CLOBL Length = 1150 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 98/690 (14%), Positives = 218/690 (31%), Gaps = 83/690 (12%) Query: 321 QELDAFVDV--TPDNLLHNIQ-SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSS---- 373 D F + T + LL I+ ++I + A+ F S + L+ S Sbjct: 240 DTTDVFSPIKNTENKLLQIIEDNNIKLDKPIALKCDPCARFKNSAELQHLEKNMFSFPYK 299 Query: 374 --------ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 I + E+E ++ + D +DI V+ D++ Y I +V Sbjct: 300 EYKNETKDICMLKTLNQFTEIENTAKDIIKLCI-DKGCRFKDIAVITGDLEGYENIISSV 358 Query: 426 FGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDI 485 F +P+ I +R ++P++ +S L + + E V L +L DI Sbjct: 359 FLQY----NIPFFIDKKREINNNPIIVLILSALEVLSKNWTYESVFRYLKTGLL----DI 410 Query: 486 TEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQ 545 E + L +V +GI+ G N + E + + + LL + + Sbjct: 411 NNEEMDILENYVLANGIK-GYQWTNDKPWEHKSFSNYELEDQALKELLAKINDIRYKAME 469 Query: 546 SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF-FLPDAE 604 ++ +++ + L + + ++ +M+ F + E Sbjct: 470 PIVTLNKNFKS----IDKAKEFCEVLYEFLCNINLPDKIQ-------NMIEDFKVEGEIE 518 Query: 605 TEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICT 663 + I ++ + + + + L L + I V + + Sbjct: 519 KASEYNQIWNIVMEVLDQIVEVIGEEKISLKEFFKILQTGFSEYEIGLIPPTLDQVMVGS 578 Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD---------RSRRDDDRY 714 + +RS + ++G+NDG++P L G + GD +S ++++ Sbjct: 579 ITRLRSHNINTLYIVGVNDGIFPSPLKEEGILSDDDREFLGDKGLEIAKDTKSIAFEEQF 638 Query: 715 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP-------GDEAL 767 L L + + L +SY + PS+++ + +E L Sbjct: 639 LVYSTLTTPSKYLRLSYPIADG-EGKTLRPSIIISRIKKIFANICEENDIVKLNGEEEEL 697 Query: 768 NCDESEARVKAHLTCLHTRM----PFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQP 823 S +L + D + W+ ++ K Q Sbjct: 698 KNISSAKPTFNYLISNLRKDVEGVKIDNIWGDTYKWYLENEFWIEKLNRLIKGFDYTNQS 757 Query: 824 ---------LPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI-PDTEPFILE 873 + P + + +++F P F Q L+ R + PD F+ Sbjct: 758 KYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYGLKAKDRKIFNLSYPDLGIFMHS 817 Query: 874 GLSRYQ-------INQQLLNALVEQDDAERLFRRFRAAGDL-------PYGAFGEIFWET 919 L ++ + ++ +++ ++L L Y + + Sbjct: 818 ILEKFSHELEKKGLEWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKI 877 Query: 920 QCQEMQQLADRVIACRQPGQSMEIDLACNG 949 + + + + + E+ +G Sbjct: 878 LKRSIWLIGEHIKRGNFKPSYYELSFDIDG 907 >UniRef50_A0AL19 ATP-dependent helicase/deoxyribonuclease subunit B n=20 Tax=Listeria RepID=ADDB_LISW6 Length = 1157 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 87/704 (12%), Positives = 208/704 (29%), Gaps = 100/704 (14%) Query: 338 IQSDILELENRAVAGVNIEEFSR---SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLL 394 ++SD L LEN+ ++ + ++ + + H ++ + E+E + + Sbjct: 264 VESDKLFLENKRAKSDSLAFLADVWGNNKFVTFEEKPQDLAIHQANNRRAEIEGIAREIR 323 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 + +D+ ++ +I Y + V S +P I +RA HP +E Sbjct: 324 QL--TLKGYRYQDMAILTRNISDYDVLCETVMESFD----IPIFIDKKRAMAKHPFIEFI 377 Query: 455 ISLLSLPDSRFVSEDVLALLDVPV---LAARFDITEEGLRYLRQWVNESGIRWGIDDDNV 511 S + + E + + ++ I L +V E+GI+ + Sbjct: 378 RSSIDAILFNWKYEPIFQAVKTEFFFDVSENTSIMRRKADILENYVLENGIQNKWKWE-- 435 Query: 512 RELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL------- 564 + W + R L + E ++ +E LI E + L Sbjct: 436 --------KEGDWIYRKIRGLSTNLLPQTDEELETQAIINEMRNLIVEPLSILENNLAKA 487 Query: 565 ---ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 M L + + LE W + E ++ Sbjct: 488 RTGTEFAMALYHFLEQVKAVEHLESWRQTAEE------NGYLELAREHEQAWSSVSELLD 541 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGM 680 E + +++ ++ + +A LD S + + + + + + KV+ +GM Sbjct: 542 EFVEVLGEESLDINSFAEIVATGLDALEFSLLPPSLDQIVLSDMENAKLLDMKVIFAIGM 601 Query: 681 NDGVYPRQLAPLGFDLMSQK---------PKRGDRSRRDDDRYLFLEALISAQQKLYISY 731 NDG+ P + G + K ++ ++ L + + KL++SY Sbjct: 602 NDGIMPLRQKDKGILSDQDRDSLRAENSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSY 661 Query: 732 IGRSIQDNSERFPSVLVQELID---------YIGQSHYLPGDEALNCDESEAR----VKA 778 + S ++++ Y+ L +E + S+ + + Sbjct: 662 PAADE-EGKVLSESNYLRKIKGQFKKLNEEVYLTDPSLLSDEEQSSYIRSKQATLGLLTS 720 Query: 779 HLTCLHTRMPFD-------PQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPET 831 L P ++ + A++ L + K + E Sbjct: 721 QLQMYKRGYPLSNVWWDAYNGYFEDTKESKVAKQVLSSLYYENKTKALHETTAKNLFGEN 780 Query: 832 V--PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT--EPFI-----------LEGLS 876 + + +++F++ + F Q L++ R E F Sbjct: 781 IHASVSRMEKFFSCEFQHFAQYGLKLEERAHFKLQAVDMGEIFHGAMEWISAELKRNNQD 840 Query: 877 RYQINQQLLNAL--VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIAC 934 + ++ + + + + + L ++ + Sbjct: 841 WGNLTEEECRQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSS 900 Query: 935 RQPGQSMEIDLACNG--------------VQITGWLPQVQPDGL 964 +E+D G + + G + ++ Sbjct: 901 AFRPIGLEVDFGLKGDIPSLKIPLKSESELLLQGRIDRIDVAEQ 944 >UniRef50_A4IKW6 ATP-dependent helicase/deoxyribonuclease subunit B n=10 Tax=Bacillaceae RepID=ADDB_GEOTN Length = 1167 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 97/637 (15%), Positives = 200/637 (31%), Gaps = 72/637 (11%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLD---SSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 NR + ++RPL P + +I + + + E+E + ++ ++ D Sbjct: 283 NRRHQDKALAHLEEQFHRRPLLPYEAETDAICLYEAANRRAEIEAVAREIIRLV-RDEGA 341 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 RDI +++ ++Y ++ VF +PY + ++ HP++E + L + Sbjct: 342 RYRDIALIIRQTEAYRDLVKTVFFDFD----IPYFMDEKEPMHYHPLIELVRAALETVVT 397 Query: 464 RFVSEDVLALLDVPVLAARFD---ITEEGLRYLRQWVNESGI---RWGIDDDNVRELELP 517 R+ E V + +L + E L +V G+ +W D+ Sbjct: 398 RWRYEAVFRAVKTDLLFPVDGDLAMWREAADKLENYVLAHGVKGEKWTSDERWTYRRYQA 457 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS-LLMQLNIWRR 576 G + + R E EW+ L L L ++ Sbjct: 458 LDGLNVPQTDEER-----QFEDKLNEWREALAAPLRRLERRLRRAADGRGLCTALYLFLE 512 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 L + LE+ ++ + + + +PL+ Sbjct: 513 ELQIPKKLEQMSAQAEA------DGRLVEARQHEQAWNAVVDLLDQYVEMLGAEPLPLAE 566 Query: 637 LRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 + LD+ + A V + L R I K ++G+NDGV P ++ G Sbjct: 567 FAKIIEAGLDRLEFALVPPAIDQVIVAQLDRSRLIDVKYAFIIGVNDGVIPAKVKDEGLV 626 Query: 696 LMSQKPK---------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 ++ + G R + D + AL ++LY++Y + PS Sbjct: 627 AEVEREQLRELGVALAPGGREQLFYDPFFVYLALACPSRRLYVTYPLADG-EGKALMPSP 685 Query: 747 LVQELIDYIGQ---------SHYLPGDEALN----CDESEARVKAHLTCLHTRMPFDPQN 793 L+++L+ + P ++ ++ + + L DP Sbjct: 686 LIKQLVQLFPRVSVHLCGNDPFDAPEEKPETFVTVPRATQTYLISQLRAWKRNYGIDPLW 745 Query: 794 YQPGERQSYAREWLPAASQAGKAHSEFVQP-LPFTLPETV-------PLETLQRFWAHPV 845 + EW QA Q L + + +++F P Sbjct: 746 WDVYNVLISHPEWRARVEQAVSGLFYTNQAVLKREWSRRLYGKKIQASVSRMEQFQKCPY 805 Query: 846 RAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAG 905 F L++ R F LE Q+ + + A+R+ + Sbjct: 806 AHFASHGLRLKERNV---------FRLEAPDVGQLFHAAIKQI-----ADRVREQHLDWK 851 Query: 906 DLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSME 942 L + E + + +V++ + M+ Sbjct: 852 QLSRSECERLSAEAVERIAPLIQQQVLSSSNRYEYMK 888 >UniRef50_Q2RL78 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=ADDB_MOOTA Length = 1151 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 157/965 (16%), Positives = 273/965 (28%), Gaps = 183/965 (18%) Query: 77 LPEIPKESAFNKQSMSWKLMTLL-----PQLLEREDFTLLRHYLTDDSDKRKLF------ 125 +P + + + + W++ P L E LR ++ D LF Sbjct: 57 VPGFSRVQVLSFRRLGWRVFQEAGGAARPHLGEMGKAMALRAVVSAHRDDLGLFAPLAGS 116 Query: 126 -----QLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 QL+ A+L Y V D ++E E Q L + L + Sbjct: 117 PGFIEQLAHTIAEL-KLYRVTPADL------DRILERYRETGREQTILARKLRDLALVYR 169 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPS-------RVFICGISALPPVY---LQALQAL 230 + + A Y + L T LP RV++ G + P LQAL A+ Sbjct: 170 ELETYLAGRYLDPDDYL---TLLAGRLPEAAFIRGARVWVDGFNGFTPQEEAVLQALMAV 226 Query: 231 GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSD 290 + + + L DP + L R A + D Sbjct: 227 AEQVTVTLCL------------DPTLRHRRLGETELFHPTGETYHRLRQLALAAGVRVED 274 Query: 291 GEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAV 350 G P R Sbjct: 275 DVCLAGTP------------------------------------------------PRFR 286 Query: 351 AGVNIEEFSRSDNKRPLDPLDS---SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 + + PL P I + + EVE +L L + L+ R Sbjct: 287 EAPALAHLEAHFGRWPLRPFRGDAAGIRLVAAANRRVEVEAAAREILR-LAREENLSWRQ 345 Query: 408 IIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 + V+V D++ Y I F D +P I RR HP++E + L + Sbjct: 346 MAVLVRDLEPYHDLIVNTF----RDFNIPLFIDRRRPVGHHPLVELVRAALEAVLEDWAY 401 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 + V L ++ + E + L +V GIR W++G Sbjct: 402 DPVFRYLKSDLVP----VPREEIDLLENYVLAHGIR-----------GRRWRDSRPWQYG 446 Query: 528 LTRMLL-----GYAMESAQGEWQSVLPYDESSGLIAELVGHL--ASLLMQLNIWRRGLAQ 580 +R L G A + A L + L + L Sbjct: 447 NSRDLETPSPPGSAAGETINAIRERASCHLRRFDGALRGRQLTGREITAALFDLLQELGV 506 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 L W D + I + ++ E + A ++ L Sbjct: 507 PERLAAWSRQAAA------AGDLDAAQEHEQIWEGLMDLLEELVLALGDTSLELEEYAAI 560 Query: 641 LAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 L L+ ++ A V TL R + +LG+ +GV P +L S Sbjct: 561 LDTGLESLKLRLIPPALDQVVAGTLDRSRQPELQAAFVLGVGEGVLPARLPEDA--TFSD 618 Query: 700 KPKRGDRS-----------RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748 + + R+ R + +L AL +++ L++SY + PS LV Sbjct: 619 REREELRAAGLELAPTGTLRLFHEEFLAYLALTRSRRYLWLSYPLADA-EGKALSPSPLV 677 Query: 749 QELIDYIGQSHYLPGDEALN-----------CDESEARVKAHLTCLHTRMPFDPQNYQPG 797 + L + L ++ + L P + Y+ Sbjct: 678 RRLRQLLPGLREETAGTELPGGDDDLVYLTTPRQAAGHLARLLGRGRPLPPLWQEVYRWL 737 Query: 798 ERQSYAREWLPAASQAGKAHSEFVQPLP-----FTLPETVPLETLQRFWAHPVRAFFQMR 852 + + ++ L G + + P + + L+ F P R F Sbjct: 738 HQDARGQKMLGLLEGGGYRNQVDPLEPELARGLYPRPLRLSISQLETFAGCPFRYFLSYG 797 Query: 853 LQVNFRTEDSEIPD-------------TEPFILEGLSRYQINQQLLNALVEQ--DDAERL 897 L + R P E GL +++ A++ Q D Sbjct: 798 LGLQERRLYQVDPAGMGQFYHAALKLFVEELGRRGLDWGRLSDNEAAAIISQVVDSLAPA 857 Query: 898 FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLP 957 + + YG + +T + M+ L + R + + ++ + G LP Sbjct: 858 LQHEILSSSARYGYLRKKLEQTLQRVMEVLNEHAR--RGEFRPLAVETSFGC---RGKLP 912 Query: 958 QVQPD 962 +Q D Sbjct: 913 PLQLD 917 >UniRef50_B0TDI1 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=ADDB_HELMI Length = 1224 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 152/1067 (14%), Positives = 287/1067 (26%), Gaps = 249/1067 (23%) Query: 14 EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMF 73 + ++ P + LV Q + L+ G Sbjct: 19 LDEIAQELKGSPQGPPL---LFLVPEQATFQT-ERALATMPG------------------ 56 Query: 74 VRVLPEIPKESAFNKQSMSWKLMTLLPQ-----LLEREDFTLLRHYLTDDSDKRKLF--- 125 L + F+ + ++++++ + + + +LR+ L D+ +LF Sbjct: 57 ---LGGTIRAQVFSFRRLAYRVLQEVGGSARIPIGDLGKRMILRNLLEKHKDELRLFHRS 113 Query: 126 ----QLSSKAADLFDQYLVY----------RPDWLAQWETGHLVEGLGEAQAWQAPLWKA 171 + A + +Y + + + + G L + L + A L+ A Sbjct: 114 AGQPGFADALAGALSELKLYNIDATSLDRCQTEVIERQGAGLLADKLHDL----ALLYGA 169 Query: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSR-VFICGISALPPVYLQALQAL 230 L + ++ L L V++ G + P L L AL Sbjct: 170 LKTFLEGKYTDP-------DDYLHLLAQRIPGSVMLRDAEVWVDGFAGFTPQELSVLAAL 222 Query: 231 GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSD 290 + CR +E D Sbjct: 223 ----------MSACR------------------------RVNVALCLDPTELDEPCDLDD 248 Query: 291 GEQDVGNPLLASWGKLGRDYIYLLSDLESSQ----ELDAFVDVTPDNLLHNIQSDILELE 346 R+ L L + E + P Q Sbjct: 249 PFFRT------------RETQAKLLQLAFDRGIVIEKALHLVPAPGQSAPRFQH------ 290 Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 ++E F P S+ + + EVE ++ + D R Sbjct: 291 ---PELQHLESFYFRRPAPPWLGGTQSLFVCAAANRRSEVEGAAREIIRLC-RDQGYRWR 346 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 D+ V++ D++SY I++VF +P I +R HP++E S L + Sbjct: 347 DVAVLLRDLESYYDSIESVFSDFG----IPLFIDSKRPAPHHPLVELIRSALEAVLRDWA 402 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 E V L ++ ++ L +V GIR G + Sbjct: 403 YEPVFRYLKTDLVP----LSRGETDRLENYVLAHGIR-GRRWRDREPWLF---------- 447 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAEL-------------VGHLASLLMQLNI 573 R+ LG S + Q + E +G + + L Sbjct: 448 -RRRLTLGEDALSEFSD-QELAELAEINGARDRARAALASFHKAVVGAKAVRPITAALYQ 505 Query: 574 WRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP 633 L + W+ A E A + + + + + + Sbjct: 506 LLVDLKAPEQISCWIA------EAEAAGRIEEAHAHRQVWAAVIDLFDQIVESLGETPLD 559 Query: 634 LSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 L+ + LD ++S V + +L R + +LG+++GV P + Sbjct: 560 LATYAVVMEAGLDSLKLSLIPPELDQVFVGSLDRSRCPGIRAAFVLGVSEGVLPARPKDD 619 Query: 693 GFDLMSQKPK----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742 G ++ + G R R D+ Y AL A ++ Y+SY + + Sbjct: 620 GIFDDKERERIYALTGLELAPGSRRRLFDEEYHIYVALTRASERCYLSYPLADA-EGRAQ 678 Query: 743 FPSVLVQELIDYIGQ----------------------------------SHYLPGDEALN 768 PS ++ + + Q Sbjct: 679 LPSSVIARVRELFPQVTERTWLLEPGSLPTGAGLSGSAFAGAATAETAAMAQTALAARTT 738 Query: 769 CDESEARVKAHLTCLHTRMP-FDPQNYQPGERQSYARE-----------WLPAASQAGKA 816 + + + V+ L + P P R++ AR WL + Sbjct: 739 KEAAMSAVERELAEEYIVHPARSLSYLIPSLREALARRPVPLVWWAVYSWLAERPAWREL 798 Query: 817 ---------HSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTE 860 H Q LP + + + ++RF A P F L++ R Sbjct: 799 LARVLSGLWHKNREQDLPKPVSRRLFGDPLRASVSRIERFLACPFSHFISHGLRLKERRI 858 Query: 861 DS-EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 PD F L Q ++L ++ G LP + E Sbjct: 859 FRLAAPDLGEFFHAALK--QFGERLRRDRLD-------------WGALPREELFRLTGEV 903 Query: 920 QCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLR 966 QL + ++ + + L + L + G R Sbjct: 904 VSDLAPQLQNEILLSTARHRYLTGRLQQTLSRAVIVLGEHARRGQFR 950 >UniRef50_A8VW70 Beta-lactamase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VW70_9BACI Length = 1157 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 85/606 (14%), Positives = 185/606 (30%), Gaps = 67/606 (11%) Query: 318 ESSQELDAFVD---------VTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD 368 E D F + + ++L ++ + E + N+RP D Sbjct: 239 EELDPFDLFFETANTAQRTLIAANHLQIGLKPAVHFEERTRFQKKGLRHLEAMSNQRPAD 298 Query: 369 PLDS--SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF 426 P D + + + E+ + + ++ +D V+ + D Y I+ +F Sbjct: 299 PSDDHSGVNIVAAVNKRAEIRFIAREIRRLV-RQENYRYKDFAVLSRNPDDYRDLIEHIF 357 Query: 427 GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAA-RFDI 485 + +P + +R+ HP++E SLL + + +DV+ L + + Sbjct: 358 E----EEQIPVFVDAKRSAIHHPLIEFVRSLLDIVSKNWRYDDVIRCLKTELTFPIDQSV 413 Query: 486 TEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQ 545 T E L G+ G + + + G + + + Sbjct: 414 TREHLDTFENITLALGLN-GYQWYDYEQWNKRLQFYRAAKEGEEDHTITLMHDLHKIMVD 472 Query: 546 SVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAET 605 ++ + + + S++ L L+ L + A + Sbjct: 473 PLIQFHDKITSQ----NTVNSIIEALFNLLVALSVPEKLASFRD------QALDKGRLQE 522 Query: 606 EAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTL 664 I ++ +I + A D + + L L+ S A V ++ Sbjct: 523 ARDHDQIWKELISIFDQASEACGQDKMNPITFNNMLDTGLESISYSIIPPALDQVVAASM 582 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK-----------RGDRSRRDDDR 713 R L+G NDGV P F MS + + + +++ Sbjct: 583 ATSRLSDISCTFLIGANDGVIPMPAEESAF--MSDRERVTLLESGHELAPAAERQLLNEQ 640 Query: 714 YLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEAL------ 767 YL +A S + +L ISY S + + PS+++ + + E+ Sbjct: 641 YLVYQAQTSPKDRLIISY-LLSDDEGKAKQPSIILNHVKEMFPALKTEIAVESPADLDIS 699 Query: 768 --------NCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSE 819 + + +++ + L P + R + P + + Sbjct: 700 DEDDYFISSPEGTQSFLTERLQRWKRGYPLPDIWWSVYNWYMSERTYAPTVRTSLTSLFY 759 Query: 820 FVQPLPFTLPE---------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI-PDTEP 869 P + T + L+++++ + F L++ R PD Sbjct: 760 DNNPGSLSKTAARGLYGQKMTASVSRLEQYYSCAFKQFANYGLRLREREYFRLDAPDIGI 819 Query: 870 FILEGL 875 + L Sbjct: 820 LFHDAL 825 >UniRef50_A5ZW43 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZW43_9FIRM Length = 1109 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 99/667 (14%), Positives = 208/667 (31%), Gaps = 73/667 (10%) Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 +A A +E+ ++ + + +P+RE+E R+ ++ + Sbjct: 280 KAPALNFLEQNLFRYHRGAYNEEQKEVQIFQAGNPEREMEETARRISRLV-REHGYRYGQ 338 Query: 408 IIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 I V+ +++ Y + VF +A +P+ + ++ + +P +E + L + F Sbjct: 339 IAVITGNLEEYGSIARHVFDAAE----IPFFVDEKHSVLMNPFVEYLRAALEMTVQGFSY 394 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 E V L D++ + L +V GIR + TW Sbjct: 395 ESVFRYLRCG----MSDLSRREVDILENYVIALGIRGFRKWNE------------TWV-- 436 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 R+ G + + E +AE + + + + +R ++E Sbjct: 437 --RIYRGMDPAVIMDLNEIREHFTEEVRELAEGFSGKKKTVGEYSRYLYDFIVKRQIQEK 494 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 L V L+ D E I ++ + + + V R L + Q Sbjct: 495 LKV--QELHFKQQGDRAREKEYAQIYGIIMDLLDKMVSILGEEVVSPEEFRQLLETGMTQ 552 Query: 648 ERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK------ 700 +++ V I + R + + +G+N+G P+ G + Sbjct: 553 AKVALIPPGIDQVLIGDMERTRLKDIRALFFVGVNEGCIPKNTESGGILTEMDRDFLGNQ 612 Query: 701 ---PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ 757 G + + R+ L + L +SY RS P+ L++ + + Sbjct: 613 GIELAPGPKELMNMQRFYLYLNLTKPSESLCLSYS-RSNGKGEAVGPAFLIRTIQTLFPE 671 Query: 758 SHYLPGDEALN-------CDESEARVKAHLTCLHTR---MPFDPQNYQPGERQSYA--RE 805 H ++ + S + +LT R F Y + Sbjct: 672 IHIERAEKPEKELDLLETPNTSVGYLLENLTDEEKRKENQLFAELYSWYLNSPDYCTMTK 731 Query: 806 WLPAASQAGKAHSEFVQPLPFTLPETVPLE---TLQRFWAHPVRAFFQMRLQVNFRTEDS 862 L A+ K + + + L + L+RF A F + L++ R E Sbjct: 732 KLTEAAFLRKPVDQISKSVAKALYGEISPNGATRLERFSACAFAHFLKYGLELTERAEYE 791 Query: 863 E---------IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRA-------AGD 906 E F +E L + Q+N + L+ A+ + A Sbjct: 792 FRAMDMGNIIHQALEEFAVE-LRQKQLNWRELSDEERDTIADNCLDKIAADYGNTILQSS 850 Query: 907 LPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLR 966 E + + L +++ R + E+ + + L +Q + + Sbjct: 851 ARNYYMIERTRRILRRTVWALQEQLKNGRFEPEGFEVAIGGGRI---DRLDVMQEEDRVY 907 Query: 967 WRPSLLS 973 + Sbjct: 908 VKIIDYK 914 >UniRef50_C0FS44 Putative uncharacterized protein n=2 Tax=Roseburia RepID=C0FS44_9FIRM Length = 1143 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 194/671 (28%), Gaps = 88/671 (13%) Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 A + +E+ + + +P+ E+ + + + +DI Sbjct: 285 APSLYFMEQNLFRPYYHKWRQKEDELRIVSLKNPREELHFVAREITK-FVREKQYCYKDI 343 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 V+ D+ Y ++ +F + +PY + R HP +E ++L + + F E Sbjct: 344 AVVTGDVSLYDNYVDEIFAAYD----IPYFLDQTRTILFHPFIEFIRAVLEVVELDFSYE 399 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 V L + DITE+ + L +V GIR + T + Sbjct: 400 SVFRFLRCGLT----DITEQQIDLLENYVLAKGIRGRKKWEKQWTFVFDDTEKEN----- 450 Query: 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588 L E + + P E+ + L L E+ L++ Sbjct: 451 ----LTEMNEVREKIYGFFAPLSEAFTQG----KTVRDETTVLYELIEKLEIEQKLKQ-- 500 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 L + I + + + + + +P+ D L + Sbjct: 501 ----KELEFERQGNQVKAKEYAQIYKIVMDLFDKVVDFLGDEVLPVKEYADILDAGFEAA 556 Query: 649 RISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK----- 702 R+ V I + R K++ +G+NDGV P+ G ++ K Sbjct: 557 RVGVIPPGNDKVTIGDIERTRLNHIKILFFIGVNDGVVPKAGNAGGIISQFEREKMVACH 616 Query: 703 ----RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 G R + R+ + LY+++ + D S V L+ + Sbjct: 617 LELAPGAREKVFIQRFYLYLNVTKPSDFLYVTFSKVNA-DGKALRRSYFVGTLLKMFPEK 675 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ-----------NYQPGERQSYAREWL 807 +E + D + L D + EW Sbjct: 676 TVEEIEETTSADCIMTPKSSMAFFLEGLQDDDRASDFSQVEKRKLWNALSKFYLTDSEWK 735 Query: 808 PAASQAGKAHSEF--VQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFR 858 P + K E +P+ + + + + L+RF A + L++ R Sbjct: 736 PETEKLLKTAYEVHSDEPISHAVTQALYGTVLENSVTRLERFAACAYAHYLNYGLRLKER 795 Query: 859 TEDS-EIPDTEPFILEGLSRYQ------------INQQLLNALVEQDDAERLF--RRFRA 903 D + L + I + + +E+ + + + A Sbjct: 796 QLLEFASVDMGNIYHDALEHFSRRVEKSEYTWFNIPEDVQETFIEESMNDAIAGCKNAGA 855 Query: 904 AGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL--------------ACNG 949 ++ +T + + L ++ + E+ Sbjct: 856 FENVRNRYLTGRMRQTIKRTVWALTTQIQKGKFVPSDFEVSFSRADKLDAIRFQLSDEEK 915 Query: 950 VQITGWLPQVQ 960 + + G + +V Sbjct: 916 MNLLGRIDRVD 926 >UniRef50_UPI0001692BDC ATP-dependent nuclease, subunit B n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692BDC Length = 1200 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 105/712 (14%), Positives = 215/712 (30%), Gaps = 129/712 (18%) Query: 318 ESSQELDAFVDVTPD-NLLHNI--QSDI-----LELEN----RAVAGVNIEEFSRSDNKR 365 E ELD F + L + Q++I + L+ R + + +KR Sbjct: 243 ERPDELDLFYPTGKTMSSLQELLDQANIGPAELIHLQPKKAPRYEHTTMLAYLEQHYDKR 302 Query: 366 P---------LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADID 416 + +S + + + EVE +L ++ + RD+ V+V +++ Sbjct: 303 IGIGVCTYSSDEDKESPLQIRAAVNRRAEVEGTAREILHLV-REQGARWRDVAVLVRNME 361 Query: 417 SYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDV 476 Y I F +P+ +R+ HP+ E S L + + E V + Sbjct: 362 EYRELIATTFSDYG----IPHFFDQKRSVFHHPLSEYLRSALEVISRNWRYEAVFRCVKT 417 Query: 477 P-----------------VLAARFDITEEG--LRYLRQWVNESGIRWGIDDDNVRELELP 517 +L R I E+ L L + GI+ G D + + Sbjct: 418 DFLLPWPLPVEPDSEGEKLLKEREAIREQRRLLDRLENYALAFGIQ-GRDWTETKPWDK- 475 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS-LLMQLNIWRR 576 L ++E E + E + + + L ++ Sbjct: 476 --------------LFKVSLEDEDSEV-----VKQRESRELEQLNRTRNQIAEPLLALQK 516 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPD--------------AETEAAMTLIEQQWQAIIAE 622 +A+ + +++ +L +P+ E + ++ + Sbjct: 517 RMARAKTVKQRCEALYRLLLDTHVPERLESWSMNCVLEGKPEKAREHAQLWDSVIQMLDQ 576 Query: 623 GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMN 681 + + + L L + L+ ++ + V + ++ RS K +LG+N Sbjct: 577 MVEMMGEEVLSLDLFAKLVDTGLESIQMGLVPPSLDQVLVGSMDRTRSTRIKYAVVLGVN 636 Query: 682 DGVYPRQLAPLGFDLMSQKPKRGD---------RSRRDDDRYLFLEALISAQQKLYISYI 732 +GV P + G ++ D R + D++++ AL +KL +SY Sbjct: 637 EGVIPAAVPEDGVLTEPERELLLDSGVPMADGGRRKLLDEQFIIYSALSVPSEKLILSYA 696 Query: 733 GRSIQDNSERFPSVLVQELIDYIGQ----------SHYLPGDEALNCDESEARVKAHLTC 782 + PS LV++L + + E L RV ++L Sbjct: 697 LADE-EGKSLLPSELVKQLRNLFPDVKEELVLTEPGVLMDSAEHLPFLAHPERVLSYLAV 755 Query: 783 LH----TRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQP---------LPFTLP 829 ++ + EW S + + L + Sbjct: 756 QLKQWMRGTAIASIWWEVYNWFARQPEWRRRLSVMDDSLLFTNKEQKLPESTSRLLYGQK 815 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 + ++R+ A P F L++ R LE Q+ L+ Sbjct: 816 LRASVSRMERYAACPFSHFASYGLRLQERKIYR---------LEAPDIGQLFHAALSQFA 866 Query: 890 EQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSM 941 Q E++ L G Q +L ++ + + Sbjct: 867 NQLRTEQV-----EWAGLTPEECGRRSSLVMDQLAPRLQGEILLSSKRYHYI 913 >UniRef50_Q67MD4 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Symbiobacterium thermophilum RepID=ADDB_SYMTH Length = 1165 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 155/997 (15%), Positives = 287/997 (28%), Gaps = 176/997 (17%) Query: 77 LPEIPKESAFNKQSMSWKLMT-----LLPQLLEREDFTLLRHYLTDDSDKRKLF-QLS-- 128 L I + + Q ++W++ LP L + +LR L D +LF Q++ Sbjct: 55 LKGIIRAQVLSFQRLAWRVSLKAGGLALPPLSDLGKQMVLRALLEKKRDDLRLFHQVADK 114 Query: 129 ----SKAADLFDQYLVYR--PDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQP 182 + A + YR P+ L + + EGLGE + A L L +L Sbjct: 115 PGFIERVAGSIRELRSYRQGPESLRRQLSQLEAEGLGET-SLGAKL-HDLALVMDELRSY 172 Query: 183 RWHRANLYQRFIETLESATTCPPGL-PSRVFICGISALPPVYLQALQALGKH-IEIHL-L 239 R ++ L + L + V++ G + P L L A+ + ++H+ L Sbjct: 173 IEGRFTDPDEYLTVLAARLEESRLLEGAEVWVDGFNGFTPQELAVLGAVMRSARQVHISL 232 Query: 240 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299 P + Y + D+ +P+ Sbjct: 233 CIPPGQLY-------------------------------------KAGGHHSPSDLFHPV 255 Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENR-----AVAGVN 354 L+ L L + E VD L L A + Sbjct: 256 LS--------TYDQLMQLAA--ESGVAVDPP------------LYLNEPLRFRGAPELAH 293 Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 +E + + I + + EV +L ++ + L R+I V+ D Sbjct: 294 VERYLFRQSAPAWPGAPERIALVEAQNRREEVAAAAREILRLV-REEGLRFREIAVVARD 352 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 ++ Y +F + +P I RR HP++E + L + + V L Sbjct: 353 LEGYGDLAATLFA----EHGIPAFIDRRRTVAHHPLVELLRAALEVVVQDWAYGPVFRYL 408 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG------L 528 + ++ + L +V E GIR G + ++T Sbjct: 409 KTDLT----GVSRAEIDLLENYVIEHGIR-GRAWQQQEPWQY--LRRYTLEEDAVPAGPA 461 Query: 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588 + LL + +L + + + L L R LE W Sbjct: 462 QQALLDEIHRIRRRATAPLLAFQRRLQRRGRPGPTVREITTYLFQLLDDLKVARQLEAWK 521 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 A D ET + + + + + + + L+ LD Sbjct: 522 A------EAEQRGDLETAREHEQVWTRVLELFDQIVEGLGDQVLSPKVYLQVLSAGLDGL 575 Query: 649 RISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK----- 702 ++ V + T+ R + +LG + +P Q A ++ + Sbjct: 576 KLGLIPPGLDQVIVGTVERSRHAGVRATLILGATEKDFPPQPAEDAIFTDRERERLKQSG 635 Query: 703 ----RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 R +++L AL L+ISY PS +V + + Sbjct: 636 LDVGPTSLERLFQEQFLTYVALTRGSDFLWISYPLADE-SGRAAAPSPVVGRMRRLFPEL 694 Query: 759 ------------------------HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY 794 AL S V+ H L+ + DP + Sbjct: 695 KPRPAAPPAPDAEAAVAQVATPRQLAAAVARALRRARSGYAVEPHWLDLYQCIVLDPDLH 754 Query: 795 QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQ 854 + G A + + G + L + + L+ F + P R F L+ Sbjct: 755 REGAAVLAAVGYEEWLRRRGTPVGRELARLLYGDRLVTSVSRLEAFLSCPFRHFAGYALR 814 Query: 855 VNFRTEDSEIP--------DTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRF--RAA 904 + R E + + L R + L + + R R Sbjct: 815 LQGRAEFTVSAPEFGLFYHAALSLFVRELERDGLAWDTLTPDEAWRRMDSIIDRLAPRLQ 874 Query: 905 GDLPYGAFGEIFW-----ETQCQEMQQLADRVI--------------ACRQPGQSMEIDL 945 ++ + + T + L++ V+ +E+DL Sbjct: 875 SEILLSSPQHRYLLRVIRRTLQSSLDYLSEHVLHGEFRPVAVEVPFGEEMDGLPPVEVDL 934 Query: 946 ACNG-VQITGWLPQVQ----PDGLLRWRPSLLSVAQG 977 G V + G + +V DG R + Sbjct: 935 PGGGRVLLRGRIDRVDALEGRDGRWYVRVIDYKSGRR 971 >UniRef50_C0Z546 ATP-dependent nuclease subunit B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z546_BREBN Length = 1165 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 109/667 (16%), Positives = 212/667 (31%), Gaps = 91/667 (13%) Query: 260 LLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYL-LSDLE 318 R + + + + + S E + +P L R Y L L E Sbjct: 208 QELRLIEQLMQHAKQVTIALTLDPNERDASVDELGLFHPTL-------RTYQALTLMARE 260 Query: 319 SSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLD-SSITFH 377 S V + LL Q + + V F D P P +T Sbjct: 261 SG------VSIAKPLLLTEAQR---FKSSPWLRQVEQVYFQWGDPPIPDQPGRADEVTML 311 Query: 378 VCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPY 437 + + EVE + +LL L + +D+ +++ +I +Y+ I AVF + +P+ Sbjct: 312 SAVNRRAEVEAVALKLLT-LSREEGYRWKDMAILLREIGTYADEISAVF----TEYGIPH 366 Query: 438 AISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEE-----GLRY 492 + +R+ HP++E S L + +R+ + V L +L DIT+E + Sbjct: 367 FLDQKRSVMHHPLVELVRSALEVIVTRWRYDAVFRCLKTDLLL--LDITDEHTARKEIDR 424 Query: 493 LRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDE 552 L +V G+ +G + + YA L E Sbjct: 425 LENYVLAHGV-FGYQWAEESPWHFRGQAGAEEDAQIDELRRKYAAP---------LLSFE 474 Query: 553 SSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLI 612 A + + + + L L LE W + D + + Sbjct: 475 KEMKQATGLN-VQEMTLALYNLLIALDVPNKLEHWQRKAEN------DGDLDAAQVHGQV 527 Query: 613 EQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIP 671 ++ + + +++ L+ L L+ + A V I + R Sbjct: 528 WTGLIELMDQVVEVMGDESMNLATFARVLDSGLETIELGLVPPALDQVLIGAMERSRQPD 587 Query: 672 FKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG---------DRSRRDDDRYLFLEALIS 722 K + LLG+N+G+ P + G +++ + + + + YL +A+ Sbjct: 588 VKALFLLGVNEGIIPLRPKEEGILDEAERERLAEMGMSLAPSAKQKLMAEPYLLYQAMTR 647 Query: 723 AQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTC 782 ++L +S + PS + + + + + + + + Sbjct: 648 PSERLILSCALADE-EGKALLPSSVFTRIREVLPDIPH----QVFYNEPTGQYETDAFLL 702 Query: 783 LHTRMPFD------PQNYQPGERQSYARE---WLPAASQAGKAHSEFVQPLPF-TLPETV 832 H R F + GE + E W AS K + L + P+ + Sbjct: 703 GHPRRVFRHLLTLLRSMKKTGELPDFWWEVYDWYIRASPDVKREQWLLSGLRYFNRPQEL 762 Query: 833 ---------------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSR 877 + L+RF + P F L++ RT E F + L Sbjct: 763 DLETSTTLYGKQLKMSVSRLERFQSCPFSHFSSHGLRLAERTMYKL----ERFDVGELFH 818 Query: 878 YQINQQL 884 + + + Sbjct: 819 ASLKRAV 825 >UniRef50_C0EV12 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EV12_9FIRM Length = 1134 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 156/965 (16%), Positives = 298/965 (30%), Gaps = 185/965 (19%) Query: 65 PASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTL------------LR 112 P F +M +++ + P+ FN +S L ++ + + LR Sbjct: 39 PEQFSLEMQRKMVKKHPRHGFFNIDVLS--FHRLAYRIFDECGYQPGEILEDLGVSMMLR 96 Query: 113 HYLTDDSDKRKLFQLSSKAADLFDQ----------YLVYRPDWLAQWET-GHLVEGLGEA 161 L++ + F+ S K A D+ Y V WE + E LGE Sbjct: 97 KILSEGENNFLYFKKSMKKAGFIDELKSMLMEFIGYGV-------TWEQVEEVSEKLGEN 149 Query: 162 QAWQAPLWKALVEYTHQLGQPRWH-------RANLYQRFIETLESATTCPPGLPSRVFIC 214 KAL +LG+ H R + ++ ++ P L + VF Sbjct: 150 --------KALSNKCKELGRIYEHFDKAIEGRFMVTEQILDVAREFAKEAPMLTNAVFYF 201 Query: 215 -GISALPPVYLQALQAL---GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFE 270 G + PV L L+ L I + + Sbjct: 202 DGFAGFTPVQLAFLKELLKVAGQINVTI-------------------------------- 229 Query: 271 DRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVT 330 +P F + + G+ LL +L E+ QE++ V + Sbjct: 230 --TIPEFVPGQRGMPEDLFTSSKKTGDALL------------MLCQ-ENMQEVEEVVKLD 274 Query: 331 PDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLH 390 + + A N+ + SR + ++ I VCH+P E + + Sbjct: 275 TP-----VSPRFINNPELAFLEKNLFQNSRKIYSKKIER----IHMTVCHNPDGEADYVM 325 Query: 391 DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV 450 ++ L RD V+ D+ Y+ + F A +P ++ H Sbjct: 326 HKI-EQLVRQKGYRYRDFAVLSGDVADYA----SAFKRKAAILNIPVFEDTKKKVSYHSG 380 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 +EA SL L + E V L ++ +E YL +V +G+R G Sbjct: 381 VEAVRSLFHLAQMEYSYESVFRYLKSG----MSNLIDEDADYLENYVLYAGVR-GYSMWK 435 Query: 511 VRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQ 570 L +LL + SV+ + + + + L +++ Sbjct: 436 KPFYRRLKNKDEAAIKAL--LLLQEKFMEETENFCSVM--RDKEASVRDKIEVLYHTMVK 491 Query: 571 LNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD 630 L+ + Q + EE + A + +++ + + + Sbjct: 492 LSFEEKLKNQAQKAEENSDFVK-------------AAEYRQLYDLLLSLMDKIVMIFGEE 538 Query: 631 AVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 + + L + + LD + L V + L R KV+ + GMNDG P + Sbjct: 539 KMAVKELAEIVDAGLDALGLGVVPLTMDQVVLGDLKRTRLHEVKVLFITGMNDGKIPPNI 598 Query: 690 APLGFDLMSQKPKRGDRS-----------RRDDDRYLFLEALISAQQKLYISYIGRSIQD 738 G L+S + K ++ + +D + A +LY SY D Sbjct: 599 EDRG--LLSDEEKEVLKNCGISLSQSLLEQSMEDEFYMYMAFAKPTDELYFSYSVTD-SD 655 Query: 739 NSERFPSVL---VQELIDYIGQSHYLPGDE--ALNCDESEARVKAHL---------TCLH 784 S PS+L + +L + + Y + N ++S + + Sbjct: 656 GSALRPSLLQKNISQLFPKLKRKQYPEEERRYYFNLEDSREFLIESFLQAKTEPEKVRKN 715 Query: 785 TRMPFDPQNY---QPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFW 841 + + G ++ + SE + + + + L+RF Sbjct: 716 RAFVMLAKYWLEQSEGRKELEKYGHWIENAYQEPELSEELLEQLYGKELSGSVTRLERFA 775 Query: 842 AHPVRAFFQMRLQVNFRTEDSEIP-DTEPFILEGLSRYQ----------------INQQL 884 A P + F L++ R E P D + L + + +Q Sbjct: 776 ACPYQYFCIYGLELREREEYKIRPIDLGNLFHKALECFSRKVKESEYSWKNIPDEVQEQY 835 Query: 885 LNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEID 944 ++ + E L F+++ Y + + +Q L + + E+ Sbjct: 836 ISEALHTAMDENLSDVFQSSSRNQYKI--KTVERIMKRTIQVLRVHLKNSQFEPDRFELS 893 Query: 945 LACNG 949 N Sbjct: 894 FGKNK 898 >UniRef50_B8I2Y3 ATP-dependent helicase/deoxyribonuclease subunit B n=5 Tax=Clostridium RepID=ADDB_CLOCE Length = 1149 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 84/690 (12%), Positives = 187/690 (27%), Gaps = 94/690 (13%) Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 ++ ++ + + P I + E+E ++ Sbjct: 276 PNLPRFKDSRELQSLETNYCSYSYRAYQLPTQD-IELFESVNIYTEIEECARDIIKQC-R 333 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLS 459 D + +DI V ++ Y I +F +P I + +HP++ +S+L Sbjct: 334 DNGMQFKDITVATRNLTGYENLIGVIFEQY----NIPCFIDSKTEITNHPLVRMVLSMLE 389 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + + E V L + I + L +V GIR G + Sbjct: 390 IFTENWSYESVFRYLKSGLT----GIDNTKIDILENYVLACGIR-GSRWTQEADWNTSIE 444 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLA 579 + + ++ + E+ L + R Sbjct: 445 FR----------------PDDGQKPENDEMLLNINKTRNEIREPLIRFRNRTKGRRTAGD 488 Query: 580 QERPLEEWL------PVCRDMLNAFFLPDAET-EAAMTLIEQQWQAIIAEGLGAQYGDAV 632 + E+L R+ + F + + + + + Sbjct: 489 FCAGIYEYLVEIGVEQRIRNYIEKFTQSGQLRLAGEYQQVWNILMDVFDQAVEVMADETF 548 Query: 633 PLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 L + L + +IS + V + ++ +RS K + +LG NDGV+P Sbjct: 549 GLEKFANVFKIGLAEYKISSIPASLDQVLVGSIEHIRSHEIKALYILGTNDGVFPSAGMS 608 Query: 692 LGFDLMSQKPKRGDR---------SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742 G + + R +R D++YL L + + L +S+ + Sbjct: 609 EGVLSDADREVLDKRGIELASDTKTRAFDEQYLIYRTLTTPKNYLRLSWPIAD-HEGRTM 667 Query: 743 FPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKA-----------HLTCLHTRMPFDP 791 PS ++ + + + D+ + A L + + Sbjct: 668 RPSTIISRMRKIFPKVTEKSNIVKPSADKQHIDLIASPIPAFNQLVCALRQKNEGIEQGE 727 Query: 792 QNYQPGERQSYAREWLPAASQAGKAHSEFVQPLP---------FTLPETVPLETLQRFWA 842 + S EW A P + + L+++ + Sbjct: 728 IWREIFAWFSGQDEWKQKCDAMINALKYRNIAAPVDKSKIRELYGKSPYFTVSRLEKYTS 787 Query: 843 HPVRAFFQMRLQVNFRTEDSE-IPDTEPFILEGLSR-----------YQINQQLLNALVE 890 P + Q L R PD F+ + R ++ + + Sbjct: 788 CPFAFYVQYGLGARERKIYRMSPPDVGTFMHAVIERFSKMVDENNYSWREFDRQWCSEQV 847 Query: 891 QDDAERLFRRFRAA---GDLPYGAFGEIFWETQCQEMQQLADRVIACRQPG--------- 938 + L + G + A + + + + + Sbjct: 848 SKIVDELLDSMKNTILGGSKRFKALAVRLKRVVTRAVWLITEHIRRSSFEPVGYEVDFGD 907 Query: 939 ----QSMEIDLACNG-VQITGWLPQVQPDG 963 M I+L +++ G + ++ Sbjct: 908 GGAYPPMVIELDSGEKIRLVGRIDRIDALR 937 >UniRef50_B6FV68 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV68_9CLOT Length = 1134 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 80/567 (14%), Positives = 177/567 (31%), Gaps = 64/567 (11%) Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 I R ++ D I + +P+ EV+ ++ L Sbjct: 279 IYRFRENTALAFLEAHLFRYSKEQYEKEQDC-IQVYCAKNPKEEVDFAAQKI-RNLARTR 336 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 R+I ++ +D+++Y I+ +FG +P + +R+ + +E SLL++ Sbjct: 337 GYRYREIAIIASDLNTYGNQIEKIFGEY----QIPIFMDHKRSILLNSFVEYVRSLLAMV 392 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN----VRELELP 517 + F E V L + ++E + + +V GIR G R + Sbjct: 393 EQNFSYESVFRYLRTGLT----GFSDEEIDIVENYVIALGIR-GYKKWQEKWIRRARGME 447 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 T R L + ++ + ++ + ++ + L + Sbjct: 448 ETELERINDIKERFL---------------IQVEDVTMVLTKRNKTVSEVTKALYDFLVK 492 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 ++ ++E+ + + E + + + + + + + L Sbjct: 493 EELQKKVKEYEIRFGN------DGELALEKEYGQVYRIVIELFDKFVELLGEEQIALKEY 546 Query: 638 RDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 + L L++ ++ + V + R K V LLG ND P + G Sbjct: 547 CELLDAGLEEAKVGVIPPSLDQVVAGDIERTRIKDIKAVFLLGANDMYIPGKENAGGILS 606 Query: 697 MSQKPK---------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 + G + + ++ + ++LY++Y S D P+ L Sbjct: 607 EHDRELFQKGGVVLAPGAKEKAFIQKFYLYLLMTKPSEQLYVTYSKVSA-DGKTLRPAYL 665 Query: 748 VQELIDY-----IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSY 802 +Q+L I + P + L A + L H + + Sbjct: 666 IQDLRRMYKKMEIQDADCQPDKKELTPKSGFAYLIEKLQKKH--EGLGTEWQELYTWYRQ 723 Query: 803 AREWLPAASQAGKA--HSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRL 853 +W Q +A + + L + + + L++F A F L Sbjct: 724 NPKWRKKIEQIVEACFYEKPKDGLTTRTAQRLYGTILENSVTRLEKFSACAYAHFLSYGL 783 Query: 854 QVNFRTEDSEIP-DTEPFILEGLSRYQ 879 + R E + D + + Sbjct: 784 NLREREEYTFQAIDLGNIFHSAIEHFA 810 >UniRef50_C5RQN7 ATP-dependent nuclease subunit B n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQN7_CLOCL Length = 1151 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 71/539 (13%), Positives = 171/539 (31%), Gaps = 55/539 (10%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 I ++ + E+E + +L + D RDI V+ ++DSY I+A+F Sbjct: 313 INININVNSFNEIEEVAKGILEAV-RDRDFRYRDIAVVTRNLDSYDEMIKAIFNEY---- 367 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYL 493 +PY I ++ +S+ ++ S L + + E V L + ++ E + L Sbjct: 368 NIPYFIDKKKEIESNKLIVFLKSALEIISKNWSEEAVFKYLKSDLT----SLSREQVDLL 423 Query: 494 RQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES 553 + +GIR G + + + +L E +L + Sbjct: 424 ENYALANGIR-GKRKWTKETWDYDFPKELSGGKEKE-EILEEINELKAQVVNPLLKLYDI 481 Query: 554 SGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIE 613 S A + + + + + + +E W+ R + I Sbjct: 482 SISKA----KVKEISKIIFQFLQQVGAFEKIENWIQGFRTEGKQLL------ANEYSQIW 531 Query: 614 QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPF 672 + + + L L+ ++ ++ V + ++ ++ Sbjct: 532 NLIIETLDMLVEVLGDAEMSLEEYEKILSIGFEENKMGLIPATIDQVLVGSVERSKTNGV 591 Query: 673 KVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR---------GDRSRRDDDRYLFLEALISA 723 K++ ++G+NDGV+PR ++ G + R+ ++++L E +A Sbjct: 592 KILYIIGVNDGVFPRSVSDEGILNDEDRTVLMENGITLASTTRAAAFEEQFLVYETFTAA 651 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG-------DEALNCDESEARV 776 ++ ISY + PS+LV L + + ++ + ++ Sbjct: 652 SDEIIISYPIADF-EGKALRPSILVSRLKNIFKKITIKSDILDVVSMEKVTLPMPTFNQM 710 Query: 777 KAHLTCLHTRMPFDPQNYQPGERQSYAREW-------LPAASQAGKAHSEFVQPLPFTLP 829 + + + + E+ + + + + + + Sbjct: 711 ISAIRAKMEGAEISEYWSEVYKWYHDQEEYKLLKDRIMRGFYYSNQGVIKNKEKIKKLYG 770 Query: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 E + + + P F L+ R + L L + ++ Sbjct: 771 EDYSVSRFETYVNCPFSYFVNYGLKAKERKLYN---------LTTLDKGTFLHNVIENF 820 >UniRef50_A6TVN9 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Alkaliphilus RepID=ADDB_ALKMQ Length = 1149 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 91/588 (15%), Positives = 195/588 (33%), Gaps = 55/588 (9%) Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSI---TFHVCHSPQREVEVLHDRLLAML 397 DI E I R N P I + E+E + +++ ++ Sbjct: 270 DI-EERKVLPKEKEIAHIEREFNTYPYKQYADEIANLEIFAGSNLYSEMENVAAQIIHLV 328 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 + DI ++ +D YS ++ VF ++PY I ++R+ ++P++E +S Sbjct: 329 -RNRGYRWNDIALVSGGLDQYSMILKRVFEEY----HIPYFIDEKRSIMNNPMIELILSS 383 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW-GIDDDNVRELEL 516 + + + EDV + L D+T++ + L +V + GIR + + E Sbjct: 384 IEILSRGYQYEDVFSFLKTGF----SDLTKDEVEQLENYVLQYGIRGKAYSEPFTKGFEK 439 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 Q G ++ + + + + P+ + + + L + + Sbjct: 440 KQIQQKDKEEGEKQIDEEKKEKYNELRMRFIAPFAKFE-KRIYRKKKIGEITKALFEFMK 498 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSL 636 L E L +W+ R+ +F E T I + I + ++ L Sbjct: 499 ELNIEDKLNQWIEELRE--EKYF----EYVNENTQIWNKIMEIFDQLTEILADESATLKE 552 Query: 637 LRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD 695 L ++ V + ++ +S K + ++G+NDGV P G Sbjct: 553 YGRILEAGFLACKVGVIPSTIDQVLVGSIERSKSHDIKALFVVGVNDGVLPFGQEDGGIL 612 Query: 696 LMSQKPKRGDR---------SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 L ++ + S +++++ A + L++SY Q+ S+ Sbjct: 613 LDHERESLVKKGISIGTTLESSLLEEQFMIYSAFSKPTEYLWVSYALAD-QEGKAMRQSI 671 Query: 747 LVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ----------NYQP 796 L+ + + D + D + ++ Q + Sbjct: 672 LIDRFKKLFK-NLRIKSDVVNDVDRQLHLITTPISTFKYMTENIRQNVDDKAMADMWWDV 730 Query: 797 GERQSYAREW--LPAASQAGKAHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRA 847 + S W G H + + +++ + L+RF P Sbjct: 731 YDWYSKEPTWEDRRKLMVKGLFHQNQITYIGENKAKSLYDNPIKSSVSRLERFANCPFSH 790 Query: 848 FFQMRLQVNFRTEDSEI-PDTEPFILEGLSRYQINQQLLNALVEQDDA 894 F L+ R E PD + + Q ++++N ++ D Sbjct: 791 FVTYGLRPKERKEYQLSNPDIGRLFHDSME--QFTKEMVNEEIQWKDL 836 >UniRef50_D2LU04 ATP-dependent nuclease subunit B n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LU04_BACS4 Length = 1171 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 106/738 (14%), Positives = 227/738 (30%), Gaps = 128/738 (17%) Query: 318 ESSQELDAFVDVTPDNLLHNIQSD------------ILE--LENRAVAGVNIEEFSRSDN 363 E ELD F + IQ+ IL+ L ++ A ++E+ Sbjct: 246 EVLNELDLFFETAK--SYQTIQNVCREHNLEVNRPFILQMSLRFKSKAIAHLEKNYEIRP 303 Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 + D I + EVE + +L ++ D + ++I++++ +I Y+ +Q Sbjct: 304 SPVYETNDG-IRVISAVHRRSEVEGIAREILHLV-RDKSYRFQEIVLILRNITDYTDLLQ 361 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF 483 VF +P + +R+ +HPV+E S L + + E V L +L F Sbjct: 362 TVFEDYG----IPLFMDQKRSMLNHPVIEFIRSSLEVIYGNWRYEAVFRCLKTDML---F 414 Query: 484 DIT------EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 + E + L +V GI+ + + W + Sbjct: 415 PLESHVSEMRERVDQLENYVLSYGIK-----------GVRWYDKKPWSYRR-------VK 456 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML-- 595 SA GE + DE I +L L L ++ + + + E L Sbjct: 457 TSADGERKRTTAEDEFEQEINQLRN---ELTKPLIWLQKQMKASKTVTEKCETIYHYLVM 513 Query: 596 ------------NAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQ 643 ++ + + + ++ + + + V L + + Sbjct: 514 CQIPEKIERMRNDSVASEELQRAKEHDQVWSAIVELLDQMVEMAGDEDVSSELYKKMIDT 573 Query: 644 RLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF------DL 696 ++ + + A V + + R + +LG+NDG+ P + D Sbjct: 574 GVESMKFAIIPPAIDQVIVADMEHSRLSNIRCAFILGVNDGIIPAKPDEGSIVTEEERDT 633 Query: 697 MSQKPKRGDRS---RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 ++Q S + ++ +L A +A + LY +Y + PS++++ + D Sbjct: 634 LAQAGINLAPSSTRQLLNETFLMYLAQSTASELLYFTYPLADE-EGKSLQPSIVLKRIKD 692 Query: 754 YIGQS-----HYLPGDEALN--------CDESEARVKAHLTCLHTRMPFDPQNYQPGERQ 800 + + P D D++ + + L + Sbjct: 693 FFPSLEEELWFHEPTDMTDEEQFFFINGSDKTLSYLTFVLQSWKKGYSIPSFWWDVYNWY 752 Query: 801 SYAREWLPAASQAGKAH--SEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQM 851 W Q + Q L + + + ++++ + F Sbjct: 753 VANENWNFKVKQVLHSLFYKNKAQQLSKHTSKELYGDHLVTSVSRMEQYQSCAFAQFANY 812 Query: 852 RLQVNFRTEDS-EIPDTEPFILEGL------------SRYQINQQLLNALVEQDDAERL- 897 L++ R E PD L Q++++ + L ++ E Sbjct: 813 GLRLKERETYKLEAPDVGTLFHAALKEMADYLRRNGKDFSQLSKEECSTLAKKIVEELAP 872 Query: 898 -FRRFRAAGDLPYGAFGEIFWETQCQEMQQLADR-------------VIACRQPGQSMEI 943 +R Y + E + LA++ Q ++ Sbjct: 873 KIQREILLSSNKYHYIKQKLEEVVARASHVLAEQSRSSGFSPIGLEVAFGENQDLPPLQF 932 Query: 944 DLACNGV-QITGWLPQVQ 960 L ++ G + +V Sbjct: 933 QLQNGTTMELVGRIDRVD 950 >UniRef50_UPI00017899D8 ATP-dependent nuclease subunit B n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899D8 Length = 1176 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 145/1008 (14%), Positives = 296/1008 (29%), Gaps = 163/1008 (16%) Query: 13 LEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGI--AANIDFPLPASFIW 70 + M +E DP +++V G + + L GI + Sbjct: 18 IRQEMIERLEHNPKGDPM---ILIVPEQG-SYEAEHALVNAGGIRGMMRAQVLSFRRLAY 73 Query: 71 DMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSK 130 + + A +++ L +L + E L + K Sbjct: 74 RVMQETGG--AAKVAISEEGKRMLLYKILRRRKEE---------LHMFGASGEQHGFVGK 122 Query: 131 AADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLY 190 ++L+ + Y + + + L + L + + Y Sbjct: 123 LSELYTEMKRY---CIDASCVEEQLGQMVSGSGNSPMLRRKLEDIVTVFRDFEVEISRFY 179 Query: 191 ---QRFIETLESATTCPPGLPS-RVFICGISALPPVYLQALQAL---GKHIEIHLLFTNP 243 + + +L T + ++I G P + LQ + K + I L P Sbjct: 180 MDEEDTLASLAEGVTESEYIKRADIWIDGFHGFTPQEYRVLQEIIVHAKRVTIALTLDKP 239 Query: 244 CRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASW 303 R E + + + + + +L Sbjct: 240 ------------------YRNGTVPHELDLFHPTAVTYIKLKGIIDEIGLEAEHRIL--- 278 Query: 304 GKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDN 363 L F + +L +++ + + R + + S N Sbjct: 279 ---------------HPDVLPRFQESP---MLAHLERG-YDRKKRWAEPDEGPDTASSPN 319 Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 + + H + E+E +L L ++ R++ V V ++ Y + Sbjct: 320 R-----GRKGLLLHAASHRRAEIEGALREMLR-LAQEEGARYREMAVFVRNMGDYEHLMG 373 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF 483 +F + +PY + +R+ HP++E S L + R+ EDV + +L Sbjct: 374 PLF----REYGVPYFLDQKRSELHHPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLD 429 Query: 484 D-ITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQG 542 +T E + L V SGI+ D +P ++E + Sbjct: 430 GSLTREDMDRLENHVLASGIQGTRWTDGRPWKGVP----------------SLSLEEGES 473 Query: 543 EWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPD 602 E ++ + E + + L+ + + + + + +L +P+ Sbjct: 474 EIRN-----QDGMAAIEYARKV--ITEPLHAFEKRMKKAASATDQSTAVYRLLEECAVPE 526 Query: 603 --------------AETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 E + ++ + + + + L L L + Sbjct: 527 KLELLSRAALDAGRPEEAREHRQVWGAVLGLLDQIVEMMGAEKLSTELFTGVLGTGLTEM 586 Query: 649 RISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR- 706 +++ + V I ++ R+ K LLG+NDGV P Q G ++ DR Sbjct: 587 KMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGINDGVLPAQFQDDGILTEPERVHLEDRG 646 Query: 707 --------SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL------- 751 R D+R+L AL SA ++L++SY + PS +V+ L Sbjct: 647 LELAPSISRRLLDERFLIYNALTSASKQLWVSYPAADD-EGKPLLPSEVVRHLKLMFQLE 705 Query: 752 ------IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYARE 805 + GQS A+ D++ A + L + + Sbjct: 706 EEPLFPRPHAGQSALEQEGYAVRPDKTLAYLAGRLRDWRNGEEIPDLWWHVYNWYAEQPG 765 Query: 806 WLPAASQAGKAHSEFVQPLPFTLP---------ETVPLETLQRFWAHPVRAFFQMRLQVN 856 P + + S + P L + ++RF A P F L++ Sbjct: 766 LRPRLTTMLSSLSYRNEARPLKLETSRQLYGTKLRTSVSRMERFVACPFSHFASHGLKLR 825 Query: 857 FRTEDSEI-PDTEPFILEGLS----RYQINQQLLNAL-------VEQDDAERLFRRFRAA 904 R PD LS ++Q + L + +RL + Sbjct: 826 ERQLYRLQAPDIGQLFHAALSSMAVKFQSQHRSWGDLTAEECLREAEATVDRLAPMLQGE 885 Query: 905 GDLPYGAFGEIFWE---TQCQEMQQLADRVIACRQPGQSMEIDLACNG 949 L +G I + + L ++ + +E+D Sbjct: 886 ILLSSKRYGYISRKLKNIVGRASVILGEQARRGKFEPIGLELDFGPGK 933 >UniRef50_A8FBR0 ATP-dependent helicase/deoxyribonuclease subunit B n=5 Tax=Bacillus RepID=ADDB_BACP2 Length = 1169 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 111/699 (15%), Positives = 218/699 (31%), Gaps = 94/699 (13%) Query: 336 HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSS---ITFHVCHSPQREVEVLHDR 392 +I I E +R + ++ +RP+ P + +T S + E+E + Sbjct: 271 ADISETIFERNHRHLYTPDLAYLEHQYEQRPVQPYQENTPHLTVSKSASKRAEIEGVARD 330 Query: 393 LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLE 452 +L ++ + L RDI V+ +D Y ++ VF +P+ I + Q HP++E Sbjct: 331 ILDLV-REKGLRLRDISVVARHVDDYKDTLKEVFRDYD----IPFFIDGNESMQYHPLIE 385 Query: 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARF---DITEEGLRYLRQWVNESGI---RW-- 504 S L + + E V + L + E L + G+ RW Sbjct: 386 LIRSSLDVIKGNWRYEAVFRCVKTEFLFPLEITKNKAREQADQLENYCIAYGVKGERWTN 445 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL 564 G R L + T + + M + EW + Y L + Sbjct: 446 GSRFHYRRFQSLDEDFRQT-----DQEIEMEQMLNDVKEWITPPLYQLQKRLKNAQ--KV 498 Query: 565 ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL 624 ++ + ++ + LE + L A + ++ E + Sbjct: 499 RDMVEAVYVFLEEIQVPDKLE------KARLEAEEAGRLAEAMQHGQVWDAVIQLMDEFV 552 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDG 683 + + L + + L + + + V I ++ R K + ++G+NDG Sbjct: 553 DMLGDEELSFPLFQQMIDTGLASLKFALIPPSLDQVFIGSMDLSRMYQVKCMFIIGVNDG 612 Query: 684 VYPRQLAPLGFDLMSQKPKR---------GDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 V P + + + + R D+++L +AL S LY+SY Sbjct: 613 VIPARPSDESVLSEDDREWLKRAGAELAETGKERLLDEQFLIYQALSSPSHHLYLSYAAS 672 Query: 735 SIQDNSERFPSVLV---QELIDYIGQSHYLPGDEALNCDESEARVKA----------HLT 781 + PS L+ QEL+ Q+ Y+ E L DE V L Sbjct: 673 DA-EGRSLLPSPLIKYCQELMPNHQQALYVLDPELLEDDEQLKFVANEHVSLSYTISQLQ 731 Query: 782 CLHTRMPFDPQNYQPGERQSYAR-EWLPAASQAGKAHSEFVQPLPFTLPETV-------P 833 + P + + + + + +PL + + + Sbjct: 732 QWLNQYPISGVWWSVYNYLMTSPNRDVSKNIMSSLFFTNRAKPLKPNVTKELYGDHIQGS 791 Query: 834 LETLQRFWAHPVRAFFQMRLQVNFRT-EDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 + +++F A F L++ R E PD L I+ L+ + Sbjct: 792 VSRMEKFNACAFSHFASHGLKLKDRQFYKLEAPDIGQLFHSALKH--ISDTLVEQKKDWK 849 Query: 893 DA-------------ERLFRRFRAAGDLP---YGAFGEIFWETQCQEMQQLADRV----- 931 + E+L R + L + E + + L++ Sbjct: 850 NLTKEDCVTYSRHAIEQLAPRLQKEILLSSNRHAYIKEKLQKILIRVSSILSEHAKVSGF 909 Query: 932 --------IACRQPGQSMEIDLACNGV-QITGWLPQVQP 961 + P L ++ G + +V Sbjct: 910 SPVGLELGFGGQGPLPPFTFQLKNGCTMELVGRIDRVDK 948 >UniRef50_D1BPP0 ATP-dependent nuclease subunit B-like protein n=3 Tax=Veillonella RepID=D1BPP0_VEIPT Length = 1185 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 115/695 (16%), Positives = 230/695 (33%), Gaps = 101/695 (14%) Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 R V E + + + D +I ++ +RE + + +LA +E RD Sbjct: 276 RGPQIVRELESNYFISPSKKNSTDETIPLIRGYNREREADAVARGILAYVESSEEARYRD 335 Query: 408 IIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 + +M+ + ++Y ++ VF +P+ I +R ++HP+ E +L + + Sbjct: 336 VCIMLRESETYGDTLEKVFTRYG----IPHFIDRQRPMKNHPLGELLTALFDIVRHNYSR 391 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGI---RWGIDDDNVRELELPATGQHTW 524 + + LL ++ +T E + L +V E GI +W + + + Sbjct: 392 DSMFLLLKTDLMP----LTREAVDELENYVLEFGIDHYKWERESWPYLRGFYEGQDEESH 447 Query: 525 RFGLTRMLLGYA---MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581 R + A + W Y + G G QL L Sbjct: 448 LDAPRRARVNKARQTIMDVLSPWFDFAAYSD--GHTGAEWGA------QLYGLLETLQVP 499 Query: 582 RPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 L EW+ +A + D E++A+ + + I E + + L + L Sbjct: 500 ERLYEWVK------DAETVGDQESKASHEQMYNAVLSFIDEISMVMKDEILTLDEMMLLL 553 Query: 642 AQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700 + L S + V I T+ S + V ++G+N GV+P+ + G L+ K Sbjct: 554 EEGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEG--LIKDK 611 Query: 701 PK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 + G + ++ +L A+ A L +SY G S +D + PS++V+ Sbjct: 612 ERQELANAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYAG-SGEDGTGLEPSLVVK 670 Query: 750 EL--IDYIGQSHYLPGDEALNCDESEARVKAH---LTCLHTRMPFDPQNYQPGERQSYAR 804 L + Y+ Q+ +P A + + L F P Y Sbjct: 671 RLESLGYVDQTVEIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYN- 729 Query: 805 EWLPAASQAGKAHSEFVQPLPFTLPETV------------------PLETLQRFWAHPVR 846 W + +E + + V + L+R+ P + Sbjct: 730 -WARESETYRSRLAEVSRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFK 788 Query: 847 AFFQMRLQVNFRTEDSE-IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFR----RF 901 + Q L++ R S P+ F+ L R + LL + D + + R Sbjct: 789 FYAQYGLKLEPRPVRSFGAPEIGTFLHANLER--LGNYLLENNKQWRDLDEEEQANLCRT 846 Query: 902 RAAGDLPYGAFGEIFWETQCQEMQQ-------------------------LADRVIACRQ 936 A L GE + + ++Q ++ + Sbjct: 847 VADEILQENQLGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQG 906 Query: 937 PGQSMEIDLACNG-VQITGWLPQVQPDGLLRWRPS 970 + + L + +++ G + ++ Sbjct: 907 GWDPIRVPLGEDRYLRLIGQIDRIDEYTRGGQTYG 941 >UniRef50_B6G1B7 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1B7_9CLOT Length = 1158 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 92/644 (14%), Positives = 212/644 (32%), Gaps = 65/644 (10%) Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 ++E + S I + EVE + + + D +DI Sbjct: 287 NEELQHLERYYNSYPYSIYQKKTEKIRIREYSNLYNEVEEVAKEIANDII-DGRYRYKDI 345 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 + +IDSY ++++F +P+ I+ + +++P++ IS+L + R+ E Sbjct: 346 TIAARNIDSYESLVKSIFSEY----KIPFYINKKSEAKNNPIITMIISVLEMKKRRYGYE 401 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 + L +L D TE+ + L +V +GI ++V E LP + Sbjct: 402 TMFRYLKSGLL----DFTEDEISLLENYVIANGISGNKWFEDVWEYRLPNSFYEYEESEE 457 Query: 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWL 588 + + +DE L ++ + + L + + +E + Sbjct: 458 ELETKKRINDIKNRVIAPIKRFDE--KLSSKNRKTVEDICRYLYEFLEDINIFEKIENTI 515 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 + R+ E+ A + + ++ + + + + L + LD+ Sbjct: 516 DILRE------KGMLESAARYSQVWNTVSDLLDQLVEIMGDEKISLERFIRIVNIALDEY 569 Query: 649 RISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD-- 705 + + V + + M + K + L+G DGV+P G S + K D Sbjct: 570 ELKTIPPSIDQVTVTEVDRMNNPNTKHLYLIGTVDGVFPMPSKENGLLSDSDRGKLSDMN 629 Query: 706 -------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG-Q 757 R R ++++L +A+ + KL +SY + + S+++ + Sbjct: 630 VELDKDSRKRVFEEQFLVYKAITATSDKLTVSYPIAD-SEGKTQRASIIISRIKKLFKYV 688 Query: 758 SHYLPGDEALNCDESEARVKAHLTCLHTR-------------MPFDPQNYQPGERQSYAR 804 E + +E V + + +T E Sbjct: 689 DIKSYFLEGVYEEEDLKEVNSKIPTFNTMVDKIKEAADKDFENGISDIWKDTYEYYLNDD 748 Query: 805 EWLPAASQAGKAHSEFVQPLPFTLP--------ETVPLETLQRFWAHPVRAFFQMRLQVN 856 + + + Q +T+ + L+++ + P F + ++ Sbjct: 749 RYNDITKRIVEGIDFTNQFEYVDEDKIKELYNSKTISVSRLEKYASCPFAYFIEYGMKAK 808 Query: 857 FRTEDSEI-PDTEPFIL------------EGLSRYQINQQLLNALVEQDDAERLFRR--F 901 R E PD F+ +G++ ++++ + + V + E + + F Sbjct: 809 DRKEYLFTAPDVGSFVHKVIENYSKTMHKDGITWHEVDDKYIELRVSEMVDELIAKIPGF 868 Query: 902 RAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL 945 Y ++ +AD++ R E++ Sbjct: 869 ILESSPKYKYLAHRLKVLITVSIKIIADQIKQGRFEPDDYEVEF 912 >UniRef50_C6JEU6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEU6_9FIRM Length = 1124 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 142/1032 (13%), Positives = 274/1032 (26%), Gaps = 193/1032 (18%) Query: 35 ILVQSTGMAQWLQMTLSQKF---GIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSM 91 I+V Q Q TL + GI NID + +F + K +SM Sbjct: 36 IIVPEQFTMQT-QKTLVEMHPGKGIL-NIDILSFERLAYRVFEETGGDNRKVLEDTGKSM 93 Query: 92 SWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWET 151 +L +++++ L YL +K F QY + Sbjct: 94 ------VLQKMVQQHRKEL--AYLGSQMNKPGYLDEVKSLVSEFMQYDI----------R 135 Query: 152 GHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLY----QRFIETLESATTCPPGL 207 + + E Q L L + L Q + + ++ L L Sbjct: 136 EENLAEMKEKAQNQPLLEMKL-KDVGILYQSFREFLKGHYMTGEEVMDVLLKQLPFSEKL 194 Query: 208 PSRVFIC-GISALPPVYLQALQAL---GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTR 263 F+ G + P+ + L+ L I + + Sbjct: 195 KGAEFLFDGFTGFTPIQVNVLRELLVIADRISVTV------------------------- 229 Query: 264 QRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQEL 323 + + G P + + + I L+ L E Sbjct: 230 ---------------------TMDEREDAFSPGKPYQLFF--MSKQMIRALAGLTRDLED 266 Query: 324 DAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQ 383 ++ + QS + NI + + I SP Sbjct: 267 PVYLKPSG-------QSRFAQAPALQFLEKNIFRYRKGVYA----EEQQEIKIFTAPSPL 315 Query: 384 REVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRR 443 E+ R+ ++ +I V+ +++ Y+ VF A +PY I ++ Sbjct: 316 EEMREAARRMSELVRTC-GYRYGEIAVITGNLEEYARLAAQVFEEAD----IPYFIDEKH 370 Query: 444 ARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR 503 + +P +E + + + F E V L ++T E L +V GIR Sbjct: 371 SVMMNPFVEYLRAAMEMAVQGFPYESVFRYLRCG----MSEVTREQADKLENYVLALGIR 426 Query: 504 WGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVG- 562 G W R+ G E Q + + E +A+ G Sbjct: 427 ----------------GYKKWSEKWVRVYRGMGAEKIQELNEIREIFAEEVRELAQGFGS 470 Query: 563 ---HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAI 619 + L + + W + R D E I + Sbjct: 471 GKKTVEEYCRILYEFIQKSDV------WQKLKRQERKFKESGDKAMEKEYNQIYGIVMDL 524 Query: 620 IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLL 678 + + + + V R L L Q +++ + V + + R K + + Sbjct: 525 LDKMVEILGEETVNRQEFRQLLESGLSQAKVALIPPSIDQVMVGDMERSRLKEIKALFFV 584 Query: 679 GMNDGVYPRQLAPLGFDLMSQK---------PKRGDRSRRDDDRYLFLEALISAQQKLYI 729 G+N+G P+ G + G + + R+ + +KL + Sbjct: 585 GVNEGNIPKSTQTGGILSELDRDFFQEQGVELAPGPKELMNMQRFYLYLNMTKPGEKLIL 644 Query: 730 SYIGRSIQDNSERFPSVLVQELID-YIG----------------QSHYLPGDEALNCDES 772 SY + + P+ L+ + Y+ ++ P + D Sbjct: 645 SYSDTNAK-GEGISPAYLIGSICSLYLKLEIEGGAGVRPHKNSINNYCYPENPEAGIDLF 703 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 ++ H Q + W + + VQ PE + Sbjct: 704 LEKLVQETEKEH--EDIREQADETDAMFGELYSWYLRNPEYRSRVQKLVQSAFAGKPEDI 761 Query: 833 ----------------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP-DTEPFILEGL 875 L+RF A F Q +++ R E P D + E L Sbjct: 762 ISQSVAKALYGEVSPYSATRLERFAACAFAHFLQYGMKLTERVEYEFKPMDMGNVMHEAL 821 Query: 876 SRYQ-------INQQLLNALVEQDDAERLFRRFRA-------AGDLPYGAFGEIFWETQC 921 + + L + A+R A E Sbjct: 822 ESFAEEVRKRGMKWTELTEQERNEIADRCLDNIVADYGNTVLKSSARNEYMIERTRRILR 881 Query: 922 QEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGM--Q 979 + + L ++ + E+ + + ++ + + Sbjct: 882 RTVWALQKQLEQGEFQPEGFEVTFGGGRI---DRVDIMEDQNKVYVKVIDYKTGNTSFDL 938 Query: 980 LWLEH-LVYCAS 990 ++L H L Sbjct: 939 VYLYHGLQLQLM 950 >UniRef50_C1RHS2 Exonuclease V gamma subunit n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RHS2_9CELL Length = 543 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 124/549 (22%), Positives = 204/549 (37%), Gaps = 43/549 (7%) Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAG 657 L A+ A + + A A + L + L RL F G Sbjct: 1 MLLTAADPTDAWQEVGARAVLADARASAAGADVPLRLPDVVALLEPRLGGRPTRAGFRTG 60 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFL 717 + +C+L PMR++P +VVCLLG++DG +PR AP G D++++ P G+R RR +DR LFL Sbjct: 61 ALTVCSLEPMRAVPHRVVCLLGLDDGAFPRAGAPDGDDVLARDPLVGERDRRAEDRQLFL 120 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVK 777 +A+ +A L + + G + + R P+V V EL+D + ++ + Sbjct: 121 DAVTAAGDHLVVVHSGADERTGAPRPPAVPVGELLDAVDEAVAFAD---------GRTSR 171 Query: 778 AHLTCLHTRMPFDPQNYQPGER-----QSYAREWLPAASQAGKAHS----EFVQPLPFTL 828 L H D +N+ PG S+ AA+ A PLP Sbjct: 172 GALVVHHPLQTVDERNFAPGALGRPGPFSFDVVDRDAATVARGPRHPRPPLLTAPLPPLD 231 Query: 829 PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 V L+ L HPVRAF + RL V E ++ D P L L + +LL A+ Sbjct: 232 DPVVDLDDLVAALEHPVRAFVRRRLGVLVPGEVDDLDDRLPLTLAPLDGWAAGDRLLAAV 291 Query: 889 VEQDDAERLFRRFRAAGDLPYGAF-GEIFWETQCQEMQQLADRVIACRQPGQSMEIDLAC 947 ++ D R R G +P G G + + P ++++ + Sbjct: 292 LDGVDLTRAAAAERRRGRVPPGNLGGAALADVATRVAAVAEAAAPVLGAPATTVDVTVPL 351 Query: 948 -NGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESR---LFLRKD 1003 +TG +P V D L+R + L ++ W+ L A R R Sbjct: 352 PGDRTLTGTVPGVHGDVLVRAVYARLGAKHRLRAWVRLLALAADPDGPPVRGAATVGRGP 411 Query: 1004 GEWR------FPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAM 1057 G P + A L++L+ + APL + + G + + + A Sbjct: 412 GTRPTAATSWLTPPEPDDARRLLAELVTVRDRALCAPLPLPVAAAGTYAHRRHGNDDPAG 471 Query: 1058 LDDDSTLQKARTKFLQAYEGNMMVRGEGD---------DIWYQRLWRQLTPETMEAIVEQ 1108 D Q R ++ E +++ G+G + W Sbjct: 472 ALAD-AEQALRDRYEHTDEYHVLAWGDGFTLAAVAGEPTPADRAAWPDEPTLL----GAL 526 Query: 1109 SQRFLLPLF 1117 ++ L Sbjct: 527 ARTVWDALL 535 >UniRef50_C9KJP7 ATP-dependent nuclease subunit B n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJP7_9FIRM Length = 1210 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 105/695 (15%), Positives = 208/695 (29%), Gaps = 105/695 (15%) Query: 320 SQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVC 379 ++E A+ P +LL Q +++ +E R + + Sbjct: 276 AREELAYRGPMPIHLLAE-QHRFA---PQSILHGMEQELFRYGGS--AQSEEQGVQLVEA 329 Query: 380 HSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAI 439 + + EVE +L ++ D R+I ++V D ++Y ++ VF +P+ Sbjct: 330 ANRRLEVESAAADILRLV-RDEGWHYREIGLLVRDGEAYGDLVRLVFEDYG----IPFFE 384 Query: 440 SDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNE 499 +R HP+ E S + + + E V L E + L +V E Sbjct: 385 DAKRPSIHHPLAELMRSAIEVVARDWRYETVFRCLRTGFFPPV----REDIDRLENYVLE 440 Query: 500 SGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP-YDESSGLIA 558 GIR + + Q W + Y+++ + + L Sbjct: 441 FGIR------GRKRWQ----QQEPWDWHRR-----YSLDDGEQVDEDTASTLALIDSLRR 485 Query: 559 ELVGHLASLLM-------------QLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAET 605 + V L++L L + L L+EW V Sbjct: 486 QSVEALSALEDALRAADDVRGYTLALYDFLVQLEVPARLQEWAEVAER------EGRLAD 539 Query: 606 EAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTL 664 A + A+ + + + + LS L+ LD +IS V + + Sbjct: 540 AAEHRQLWDDSMALFDQLVEVSGTEKMTLSDYEAVLSDGLDALQISLIPPGLDYVTLASF 599 Query: 665 MPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP-------------------KRGD 705 + + +LG + PR++ G + + RG Sbjct: 600 DQNSLDNMRGLYILGADAATMPRRVREQGIFSDADRLHIAETLAAFQKEGEEEHTISRGG 659 Query: 706 RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDE 765 + +++L A+ L+ISY + + PS LV+++ + ++ +L Sbjct: 660 HEKSFGEKFLLYRGFTEARDYLWISYALADA-EGNGLQPSPLVKKMRELFPKAAFLSIPL 718 Query: 766 ALNCDESEARVKAHLTCLHTR----------MPFDPQNYQPGERQSYAREWLPAAS--QA 813 + + + A L P +EW A Sbjct: 719 ETVRRDDDLLLAAPRPALSGLANALRGEREHQAMQPCWRDVYNWAMGQKEWQRPLQLALA 778 Query: 814 GKAHSEFVQPLPFTLPETV---------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 G +P L E + + ++F P F L++ R E Sbjct: 779 GLFARSGAGRIPKELAEQIFAKGTVLRGSVTQFEKFRQCPFAHFAAYGLKLQERREYQFR 838 Query: 865 PDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEM 924 QLL+A++++ + D+P + E Sbjct: 839 SMD-------------LGQLLHAVLKEYGSIVKRDYANRWQDVPEEKRAALCEELVNTLA 885 Query: 925 QQLADRVIACRQPGQSMEIDLACNGVQITGWLPQV 959 +L ++ R + ++ + Q G L Sbjct: 886 PRLQSEILLSRDNYRHLKKRIEKTAEQAVGHLSAW 920 >UniRef50_C6IZE2 ATP-dependent nuclease subunit B n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZE2_9BACL Length = 1180 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 106/695 (15%), Positives = 215/695 (30%), Gaps = 93/695 (13%) Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 E E + E S P L+ +++ H S + EVE ++ L Sbjct: 285 PRFRESETLSYLESAYERRSPWPKSEPPQDLEQALSLHRAASRRAEVEGAAREMVR-LAR 343 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLS 459 + + RD+ ++V ++ Y + + +PY + + + HP++E + L Sbjct: 344 EEGVRWRDMALLVRNLGDYEELLAPTMEAYG----IPYFLDQKASMLYHPMIEFIRAALD 399 Query: 460 LPDSRFVSEDVLALLDVPVLAARFD-ITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 + + EDV + L +T E + L + SGI+ D P+ Sbjct: 400 VVLGFWRYEDVFRCVKSEFLLPLDGSLTREHMDVLENYALASGIQGYRWFDGRPWKSAPS 459 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 L + +++ A + G L++ ++ + Sbjct: 460 -------------LSLEQEDQTAASVKAMEQLQLLERCRAAVAGPLSAFEKEIRKAKNAA 506 Query: 579 AQERPLEEWLPVCR-----DMLNAFFLPDAE--TEAAMTLIEQQWQAIIAEGLGAQYGDA 631 + L D+L + + + + ++ + + + Sbjct: 507 DMCAAVFHLLERVEAAQRLDVLAHRMVREGKPRQAMEHRQLWSAVLDVLDQIVEMMGDEP 566 Query: 632 VPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLA 690 + L L L L + ++S + V I + RS K + LLG+N+G+ P L Sbjct: 567 LELELFAGVLETGLKELKVSLVPPSLDQVLIGSTERTRSGQVKHLFLLGINEGIMPANLQ 626 Query: 691 PLGFDLMSQKPK---------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSE 741 G ++ + G + D+R+L EAL A + L++SY + Sbjct: 627 EEGVLSEQERERLAELGLELAPGLARKLLDERFLIYEALSGASRSLWLSYPAADG-EGGA 685 Query: 742 RFPSVLVQELIDYIGQSHYLP------------------GDEALNCDESEARVKAHLTCL 783 PS +++ + P + + + L Sbjct: 686 LLPSEVIRHVKRIFPGLTERPLLLTPGPASRSADPMASQLEFVSRPGPALNALIGQLRLW 745 Query: 784 HTRMPFDPQNYQPGERQSYAREWLPAASQAGKAH--SEFVQPLPFTLPETV-------PL 834 P ++ E EW A++ + V+ L + + Sbjct: 746 KAGESISPLWWRVLEWYKTRPEWESKAARLLTSLDYRNRVRGLTPATSRRLYGKRLRTSV 805 Query: 835 ETLQRFWAHPVRAFFQMRLQVNFRTEDSEI-PDTEPFILEGLSRYQINQQLLNALVEQDD 893 +++F A P F L++ R PD LS+ I + N Sbjct: 806 SRMEQFSACPFAHFASHGLKLKERQLYRLQAPDIGQLFHAALSQMAITFKAQNRSWGSLT 865 Query: 894 AERLFRRF-RAAGDLPYGAFGEIFWETQC-----QEMQQLADRVIACRQ----------- 936 E + A +L GEI ++ ++++ + R Sbjct: 866 PEEAIQAANSAVDELAPKLQGEILLSSKRYGYISRKLKAIVGRASLILGEQARRGSFEPV 925 Query: 937 ----------PGQSMEIDLACNGV-QITGWLPQVQ 960 P + +L V +I G + +V Sbjct: 926 GQELDFGPGRPLPPLTFELPNGCVMEIVGRIDRVD 960 >UniRef50_B1HN89 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Bacillaceae RepID=ADDB_LYSSC Length = 1169 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 197/656 (30%), Gaps = 96/656 (14%) Query: 342 ILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401 + + E + ++ + + + EV + + L + Sbjct: 275 FYYTQRFQSEDLQHVEANFANMVPHTKKTSGDVMVFEASNRRAEVHAIAREITK-LTREY 333 Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 +DI+++ + Y P I ++F +P + ++ HP++E S L + Sbjct: 334 GYRYQDIVLLYRQAELYDPLITSIFQQYE----IPIFTNTKKTMLHHPLIELSRSALEIM 389 Query: 462 DSRFVSEDVLALLDVPV---LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 S + E V + + L A I E L + GI Sbjct: 390 TSNWKYEPVFRSVKTDLFFPLQAELTIWRERADRLENYCLAQGI-----------YGERW 438 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 + W + R L E+ S + DE + AE+ + L + L Sbjct: 439 FEEPRWFYKKYRGL----------EFHSRVQTDEERAMQAEIEAIRDEIRQPLKSLQDKL 488 Query: 579 AQERPLEEWLPVCRDMLN--------------AFFLPDAETEAAMTLIEQQWQAIIAEGL 624 + ++ +++ DA + +W ++ + + Sbjct: 489 SIASTGKDIATALFELVESLQVYEKLQAMKDRELERGDALAASEHEQAWNEWINVLDQFV 548 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDG 683 + + L + D S+ V + T+ R KV +LGMNDG Sbjct: 549 YMFGEQEMSVEEAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVAFVLGMNDG 608 Query: 684 VYPRQLAPLGFDLMSQKPK---------RGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 VYP ++ G +++ +R + +LF A + KLY++Y Sbjct: 609 VYPTRMEYEGLLSDTEREWFSQIGYELAPTSSNRLLQENFLFYRAASTPSNKLYLTYPTA 668 Query: 735 SIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAH---LTCLHTRMPFDP 791 + S+ +++ I + L G +A + H R Sbjct: 669 DE-EGKALLSSLYIKKFIGNDKIAGLLSGVQAERVVMDPIELLDESALPYLRHPRTALAH 727 Query: 792 ---QNYQPGERQSYAREWLPAASQAGK---------------AHSEFVQPLPFTLPETV- 832 Q Q + A EWL + H +PL + + + Sbjct: 728 LMVQLRQAEHSRELAPEWLALQKFYQQDPYWALIFDRVHYPITHKNEAEPLETYITQELY 787 Query: 833 ------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN 886 + +++++ P F L++ R E E F + L + Sbjct: 788 GQKLTSSVSRIEKYFRCPFSHFTTYGLRLEERAEYRL----ETFAMGDLFHEALK----- 838 Query: 887 ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSME 942 E R + L ++ + Q + + +++ + ++ Sbjct: 839 -----WITEETHRLQLSWIRLTKQQIKQLARQAVEQIVPVFSHQILLSSARYRYIQ 889 >UniRef50_C7GAA1 ATP-dependent nuclease n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAA1_9FIRM Length = 857 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 83/592 (14%), Positives = 170/592 (28%), Gaps = 77/592 (13%) Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDPLD-SSITFHVCHSPQREVEVLHDRLLAML 397 Q + N+ + I +P+ E++ ++ L Sbjct: 279 QRRYANAADLYFMEQNLFRPGAGSYRYKAPEQSMQHIRITSLKNPREELKFAAREIVR-L 337 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 + RDI V+ D+ Y ++ +F ++PY I + HP +E ++ Sbjct: 338 TRENGYRYRDIAVVTGDVQQYGNYVPEIFEQY----HIPYFIDQTKNILFHPFIECIRAI 393 Query: 458 LSLPDSRFVSEDVLALLDVPVLAA---------------------------RFDITEEGL 490 L + + F E V L + + +TE+ + Sbjct: 394 LEMIEYDFSYESVFRFLRCGLASRVVTEAKNSDKEPDPAATEDLTQQPETGSHGLTEQEI 453 Query: 491 RYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPY 550 L +V GIR G + + G L + + +++ P Sbjct: 454 DRLENYVLARGIR-GASRWSRPWTFVMPDGTLEDMARLNEI--------REAVYENFKPL 504 Query: 551 DES-SGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAM 609 E+ G + L R L E+ L+E + Sbjct: 505 LEAFRGKDNTVSTQTYE----LYSLIRRLDMEQLLKERGNFFEA------HGNQARAKEY 554 Query: 610 TLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMR 668 I + ++ + + + + D L + ++ V + + R Sbjct: 555 DQIYKIVMDLLDKVTSLLGDETMTIREYSDILDAGFEAAKVGIIPPGNDTVTVGDIERTR 614 Query: 669 SIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK---------RGDRSRRDDDRYLFLEA 719 K++ +G+NDGV P+ G ++ K G R + ++ Sbjct: 615 LNHVKILFFVGVNDGVVPKAGNQGGIISQFEREKMAEYHLELAPGAREKVFIQKFYLYLN 674 Query: 720 LISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAH 779 + ++LY+++ + D S L+ L+ Q E + + A Sbjct: 675 MTKPSERLYVTFCRVN-SDGKALRRSYLIGTLLKLFPQLAVEEPSEEETLEGALTAESAL 733 Query: 780 LTCLHTR----------MPFDPQNYQPGERQSYAREWLPAASQAGK--AHSEFVQPLPFT 827 + + + AA A K A S+ V + Sbjct: 734 PFLMEGLTKPVEDEEAWTALLAWYLSDEGEREKVMQLFDAAFGAHKDDAISKAVTKALYG 793 Query: 828 LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDS-EIPDTEPFILEGLSRY 878 + L++F A + L++ R D + L R+ Sbjct: 794 NTLENSVTRLEQFAACAFAHYLSYGLRLKERELQQFASVDMGNIYHDVLERF 845 >UniRef50_B7AS97 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AS97_9BACE Length = 1091 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 88/576 (15%), Positives = 178/576 (30%), Gaps = 69/576 (11%) Query: 302 SWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRS 361 S + ++ I L + ++ P L + +RA +E+ Sbjct: 245 SLFAMSKETISSLLRIADESHVEV----APYTLCEHT-----YRFDRAPELAFLEQNMFR 295 Query: 362 DNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPF 421 N R +I + +P+ E++ + +L L + + RDI V+ ADI++Y Sbjct: 296 YNGRVYRDEPENIEIYCGITPKEELQFIAAEILR-LTREQGIRYRDIAVVSADIETYGML 354 Query: 422 IQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAA 481 +F +P + +R ++P++E S +++ +S + E + L + A Sbjct: 355 AANIFEQND----IPAFVDYKRNIMNNPMIEFMRSGIAVIESGYSYESMFRFLRSGITA- 409 Query: 482 RFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQ 541 IT L + GIR + ++ + + L E Sbjct: 410 ---ITPNETDLLENYCLALGIR------GRKRWYSQW-DRNYIKKNREKADLTQLNELRY 459 Query: 542 GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP 601 + + P D + + + LL L + E + E Sbjct: 460 RTVKILEPLDRAYTAASGTTVSVGELLEALYEFVAASDIEHKMNELADRLE------LNE 513 Query: 602 DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVN 660 + + I + ++ E + + L L++ ++ V Sbjct: 514 ENALASQYRQIYPKVMSLFDEIYSLLGEEKIKRKEFARLLDSGLEEIKVGLIPPTADCVL 573 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP---------KRGDRSRRDD 711 I + R KV+ G+NDG+ P++ G + R + Sbjct: 574 IGDMQRTRLDNIKVLFFAGVNDGIVPKKSENKGILSELDRYILENASVTLSPDARKKAFI 633 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDE 771 +R+ L KLY++Y R I D ER PS V+ + + D+ N Sbjct: 634 ERFYLYMNLTKPSWKLYLTYAARGI-DARERRPSYFVRTMYKLYPKLSMRTCDDMNND-- 690 Query: 772 SEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPET 831 T D + + + + A Sbjct: 691 ----------MWLTIPKADKEWNIKDSQINLVQAAADALYGTDVRE-------------- 726 Query: 832 VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 867 + L++F + F + L ++ R + Sbjct: 727 -SVTRLEQFASCEFAHFLRYGLGLDERDVYTISASD 761 >UniRef50_UPI00016C0037 ATP-dependent nuclease subunit B n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0037 Length = 1100 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 97/672 (14%), Positives = 209/672 (31%), Gaps = 86/672 (12%) Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 N+ I + + + +++ C + + E+E++ + D T Sbjct: 255 FANKTADIQFIADNYFATHSIKQPRDSANVRLFACRNFESEIELVAQNITR-FVRDDTYR 313 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 +I ++ +++ Y + V G +PY + + + Q++P + ++LL + Sbjct: 314 YNEIAIITGNLNLYRSHLTTVLGQYD----IPYFLDETKTIQANPAVNFILNLLEVITQH 369 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 + +L+ L +L D +E + YL ++ E GI + E E +T + Sbjct: 370 WNLTAILSFLKSGILT---DFADEDIDYLENYLYEHGINYKNKWLEXWEEETDSTLINDL 426 Query: 525 RFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPL 584 R + ++LG Q ++ + ++ ++L L + + + Sbjct: 427 RTRVASIILG--------IEQKIIAHKHRGKILT------SNLCRILYDFLVEINFANTI 472 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQR 644 W + + I Q I+ + V ++ + L Sbjct: 473 -RWESKSESEIEHTLSKNFNLALEYKHIYQTILDILDRLVDILGNQYVNIATFKSILTTC 531 Query: 645 LDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--------D 695 E++ + + + R K+V L+G+N+GV+P + Sbjct: 532 FKHEKVGTIPATQDQILVGEIPRTRLPKQKIVFLIGLNEGVFPANPINDSLFSDMDLTAN 591 Query: 696 LMSQKPKRGDR---SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 L + P + S LI + L+ SY PS++ L Sbjct: 592 LFNANPNLYELFIYSNLYGSELEIYSTLIKPSRYLFASYSMGDD-SGKITRPSIIFTRLK 650 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAAS- 811 Y P A + K + L + + + YA W Sbjct: 651 RMFT--MYAPSTTATTFADQIYTSKQAIIALGRAIKQNAGIATLDDSYKYALMWYMQHQP 708 Query: 812 --------------QAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNF 857 Q K ++ + L ++ + + +++F P F + L + Sbjct: 709 DAIVQTVNGLFFTNQQDKLQTDIAKKL-YSNNQVTTVSRIEKFRRCPCAYFIEYGLLASE 767 Query: 858 RTEDSE-IPDTEPFILEGLSRYQINQQLLNAL------VEQDDAERLFRRFRAAGDLPYG 910 R PD L Y +LL A + D ++L + L Sbjct: 768 RKLFKFRTPDIGTIFHSVLEIYP---KLLQAAGSTWTTITPDAQQQLVATAVSESMLQNN 824 Query: 911 AFG----------EIFWETQCQEMQQLADR------------VIACRQPGQSMEIDLACN 948 + + + +A + ++EIDL Sbjct: 825 KLKIKNGHTKYLTKRIETMSNRAITAMASQLKCGKFVPAEYEYKFNDAALPAIEIDLGET 884 Query: 949 GVQITGWLPQVQ 960 +++TG + +V Sbjct: 885 TLRLTGTIDRVD 896 >UniRef50_C9LTM7 ATP-dependent nuclease subunit B n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LTM7_9FIRM Length = 1151 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 107/759 (14%), Positives = 207/759 (27%), Gaps = 110/759 (14%) Query: 251 IKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN-SDGEQDVGNPLLASWGKLGRD 309 + Y K+ R L S + NP R Sbjct: 169 LIYSRYREKMAGRYNDTGDMLDALAEKIPSSRLLEGAEVWVDGFSFFNP-------QERK 221 Query: 310 YIYLLSDLESSQELDAFVDVT------PDNLLHNIQSDILELENRAVAGVNIEEFSRSDN 363 + L + + D T + L Q+ L+ R + I RS Sbjct: 222 ILAALFQKAKNVHITLTFDPTDEAAMQREGSLFYRQAQTLQQLRRLAQEMQIPVRVRSLE 281 Query: 364 KRPLDPLDS--------------------SITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 +R D+ + + + E+E ++ + + L Sbjct: 282 ERRRFQSDALAAIERTAFSFPLVPQAGAAGVALVEAATRRLEMEAAAADIVRLC-REKGL 340 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 RDI ++ D +Y + D +PY ++R HP+ E S + Sbjct: 341 RWRDIAILTRDEAAYGDML----ALTLEDCGIPYFRDNKREGVHHPLAELVRSAFEVLRG 396 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIR---WGI--DDDNVRELELPA 518 + + + L F T + L +V E GIR W + D R L Sbjct: 397 -WRYDAMFRALKTGF----FKKTRGQIDLLENYVLEFGIRGSSWTMEEDWHWHRRRSLDE 451 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 + + R+ ++V + + + L L Sbjct: 452 EEEGATQKEAERLC------QINSCRRAVAEPLQEFAAQVKAASTVRGYAEALYRLLLAL 505 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 + LE W I +++ + + + + Sbjct: 506 DVPQTLERWADEAEK------AGRLAESREHRQIWDDVISLLEQMAETSGDETIKVREFE 559 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 D L LD +IS V + + + +LG N+GV PR+ G Sbjct: 560 DVLGDGLDALQISLIPPGLDYVTVADFDQNSVENARAIYILGANEGVMPRRSQEKGLLSD 619 Query: 698 SQKPKR---------GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748 + + G ++R+L + A+ L++SY + P+ L+ Sbjct: 620 ADRLHLKEAGLELPQGSVEGSFNERFLLYKGFTEARDYLWVSYALAD-TEGKALLPASLL 678 Query: 749 QELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLP 808 ++ + A + +T + G + + Sbjct: 679 GQIRTVLPAVSLQTVPLEGAERRLFAGGRQAVTA---LAAALRSYREKGTLDPFWCDVYN 735 Query: 809 AASQAGK------------AHSEFVQPLPFTLPETV---------PLETLQRFWAHPVRA 847 A K + LP L + + + F A P + Sbjct: 736 WALGERKMSIVLQKVLQGIFSHAAAELLPKELAAALYTKNRRLRGSVTRFESFRACPFQH 795 Query: 848 FFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDL 907 F + L + R L + L E+ + RR+R G+ Sbjct: 796 FARYGLHLAERPAH---------GFRTLDLGVLLHAALREFGERLKKDG--RRWRDVGE- 843 Query: 908 PYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLA 946 GEI E +L + ++ + +++ + + Sbjct: 844 --EECGEILHEILGLLAPRLQNEILLSSKQYENLLVRIE 880 >UniRef50_C6LH76 ATP-dependent nuclease subunit B n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH76_9FIRM Length = 1162 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 114/698 (16%), Positives = 207/698 (29%), Gaps = 115/698 (16%) Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDS-SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 R+ EE +RS P +I+ H +P +E + A+L + + Sbjct: 312 RSANPHTAEETARSGEAEPECASSGCAISLHTAANPVQEAHFAARTIRALLRQ--GYRYQ 369 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 DI V+V D+ SYS +I VFG + Y + R S+P++E ++L + F Sbjct: 370 DIAVIVGDLPSYSSYIPQVFGEY----KIAYFMDSTRTVFSNPLVEFLRAVLDMIQQDFT 425 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 V L + I + L L +V +G+R G WR Sbjct: 426 CASVFRYLRTGLCR----IDAQKLDMLENYVLAAGVR-GFSR---------------WRE 465 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE----R 582 TR ++ L + ++ L L+ + R ++ Sbjct: 466 PFTR----------AVDFLDEEQLALCEELRSLIMEPLLPLVSCMRQARTTAREKTEGLH 515 Query: 583 PL---EEWLPVCRDMLNAF-FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 L DM F AE E I I + +A+ L Sbjct: 516 TLLCHYNIQQQLADMEKQFRADGQAELEKEFAGIYAMVIGIFDKLAELLREEALTLQEYT 575 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 + L ++ R+ + V + L R KV+ LG+NDG P A G L+ Sbjct: 576 ELLEAGFEEARVRLIPPSADRVQVGDLERSRLTDIKVLIFLGLNDGWVPATGA--GGGLL 633 Query: 698 SQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 S + R R+ L +++LY+S D S PS Sbjct: 634 SDMERETLMESRVELAPTTRQNSYIQRFYLYLNLTKPRERLYLSCSKA-TADGSLLRPSY 692 Query: 747 LVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPF-DPQNYQPGERQSYARE 805 +++ + D + + L L F + QP Sbjct: 693 VMRTIGRLFPGLSVHDEDVCESFSSRVETPQNALAYL--LEGFWSIRERQPSGEWLELYN 750 Query: 806 WLPAASQAGKAHSEFVQPLPFTLPET----------------VPLETLQRFWAHPVRAFF 849 W K V+ T E+ + L++F + F Sbjct: 751 WYRRKEDTKKQVQRLVEAAFLTFDESGIGRKAARELYGEVLVNSVSRLEKFASCAFAHFL 810 Query: 850 QMRLQVNFRTEDSEIP-DTEPFILEGLSRYQ----------------INQQLLNALVEQD 892 Q L++ R E P D + Y + + + V + Sbjct: 811 QYGLRLQEREEYVFRPVDMGRVFHSAIELYSRKVEESGYDWFRIPEEVRDRFIEEAVNEV 870 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR-------------QPGQ 939 A + + G + + L ++ + + + Sbjct: 871 SAAYGQQILHDSARN-EAMIG-RMKRIMRRTVWALHRQIQSGHFYPANFEVSFSQAEELE 928 Query: 940 SMEIDL-ACNGVQITGWLPQVQ---PDGLLRWRPSLLS 973 ++ I L +++ G + ++ + + + Sbjct: 929 AVNIALSPEEKMRLQGRIDRIDVCEKEEQVYVKVIDYK 966 >UniRef50_B0NWV1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NWV1_9CLOT Length = 1126 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 77/550 (14%), Positives = 175/550 (31%), Gaps = 61/550 (11%) Query: 347 NRAVAGVNIEEFSRSDNKRPLD---PLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 + ++ + P + I +P++E + + + + Sbjct: 282 PDERDSKELRHLEQNIERYPYEIYKDEPEDIKIRCFMNPRQESRTVANEI-ERFVREEGY 340 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 +DI+V+ AD+DSY ++ F D ++PY + R ++P +E +S+L + Sbjct: 341 RYKDIVVLTADLDSYQNELEKSF----DDLHIPYFVDVNRKLLNNPCIETLLSVLKMIQK 396 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 F + V L + T E +L +V GIR + +L + Sbjct: 397 DFSYDMVFRYLKSGF----SNFTMEEADFLENYVLACGIRGFARWNRPFASKLFSDEDVG 452 Query: 524 WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 L + + + + L+ L + L E Sbjct: 453 RAEALR--------------IRFIEEVGTLKTGLKRRGSTVKRKLIYLYEFLETLDVEGK 498 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQ 643 + + + D A + +Q ++ + + + L Sbjct: 499 MVKKQEMFEA------SGDLIAAATYAKVYEQVIDLLEQMAEILGEEKLSYDDFLSVLES 552 Query: 644 RLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK 702 L++ +I + V I + R+ K++ LG+N+GV P G +++ + Sbjct: 553 GLEEMQIGVIPPSLDQVMIGDMKRTRTEEVKILFFLGINEGVIPAA--NGGGGVVNDHQR 610 Query: 703 -----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 G + +++ + +LY+SY N+ R PS ++ + Sbjct: 611 EVLETYGINLAPGIKQSAYMEQFYLYLTVSKPTDRLYLSYRMMDAAGNNNR-PSYFIERI 669 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ------------NYQPGER 799 + +E + ++ + M FD + Y + Sbjct: 670 QRIFPKLKVTMQEEEVQTGYTKEEALDQMILCLQEMEFDERDDDPEKMKWMQTLYHALKE 729 Query: 800 QSYAREWLPAASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWAHPVRAFFQMRLQVNF 857 +++ A +A + + +T+ + +++F F Q L++ Sbjct: 730 LEPVGDYVDARFYTNQALPLSKELIHDLYGDTISGSVTRMEKFAGCAFSHFMQYGLRLRK 789 Query: 858 RTEDSEIPDT 867 R +P Sbjct: 790 RLVHEILPTD 799 >UniRef50_C4G1J6 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1J6_ABIDE Length = 1133 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 126/903 (13%), Positives = 268/903 (29%), Gaps = 143/903 (15%) Query: 14 EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQ--MTLSQKFGIAANIDFPLPASFIWD 71 L + +E +P + ++V Q + + LS+ I NID + Sbjct: 15 SELCFNKIVKEAEKNPDKNYFVIVPEQFTLQTQKDLVRLSRAKAI-MNIDVLSFMRLAYR 73 Query: 72 MFVRV-LPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSK 130 +F + + E K + KL+ L + L + + ++ K LS Sbjct: 74 VFEELNIKERLILEDTGKNMVIRKLLGGLKEELCFYKNAVGK---QGFTEDLKSL-LSE- 128 Query: 131 AADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLY 190 F QY + PD L + + L A +++A Y + Sbjct: 129 ----FMQYGIT-PDNLTKIKEKTSSPVLAAKLQDAALVYRAFNNYKKEKYISA------- 176 Query: 191 QRFIETLESATTCPPGLPSRVFIC-GISALPPVYLQALQALGKHIEIHLLFTNPCRYYWG 249 ++ +E L + + L + V G + PV L+ + L E L Sbjct: 177 EQILEVLANEISRSKLLENSVICFDGYTGFTPVQLKVIDLLLVKAEHLLFTLTVSE---- 232 Query: 250 DIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRD 309 D + + + L +D Sbjct: 233 ---------------------------------KDYYSEEDEKFRLFH--------LSKD 251 Query: 310 YIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDP 369 I ++ L + ++ VT + + R + P+ Sbjct: 252 TINKINKLAGERGVEVARPVTAE---------------FCGKVKALSLLERQIFRYPVKK 296 Query: 370 LD--SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG 427 D +S+ +VC +P+ EVE L +L+++ D L RDI V++ D++ Y + Sbjct: 297 TDSENSVRINVCKNPREEVERLIPDILSLV-RDEGLRYRDIAVVLGDMEEYGEMVV---- 351 Query: 428 SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITE 487 + + +P + ++ +P +E + L + + F + V+ L ++ Sbjct: 352 DTLSSKGVPCFLDSKKTIADNPFVEYIKASLLVVEENFSYDAVMRYLRSGF----ANVDV 407 Query: 488 EGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSV 547 + ++ GI+ G ++ A+ + + GL Sbjct: 408 YEVDIFENYILRRGIK-GFRRYQTSFIKDEASEEESISEGLR-----------VTLVDEF 455 Query: 548 LPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEA 607 P + + L + E L + + Sbjct: 456 KPLYDILKSKKSKAE---DFVKALYEFVSASGSEERLMKLSADFEE------KGKMIAAR 506 Query: 608 AMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMP 666 + ++ + + + + R L + + + I + Sbjct: 507 EYAGCYRIVMSVFEKMYELLGDEKLSIEEFRSILESGFSEGKAGFIPPGLDQIVIGDVER 566 Query: 667 MRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRG---------DRSRRDDDRYLFL 717 R KV+ LG N+G P+ + G ++K K + R +++ Sbjct: 567 TRLKDIKVLFCLGFNEGKVPKSVGARGIITDTEKEKLAGMNVELAPTAKERAFREQFYIY 626 Query: 718 EALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN-----CDES 772 ++LY+SY ++ + PS ++ L Q E ++ + Sbjct: 627 MLFSKPTERLYVSYSSSNM-EGKPIKPSSVINRLRAVFKQEIVSEPTEEVSLINEIRKDG 685 Query: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQ-AGKAHSEFVQP-LPFTLPE 830 + N Y + KAH ++ + L Sbjct: 686 GMELILSAIKKRDLKDSTVINLIKYYNCHYDDRYNKIIEGTVSKAHGNSLEKYIATELYG 745 Query: 831 TV--PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 + + L+ F + F + L++ R E F L+ + I ++L Sbjct: 746 ELKGSVTRLELFSSCAYAHFIKHGLRLKERKE---------FELKPMDIGNILHEILERF 796 Query: 889 VEQ 891 ++ Sbjct: 797 AKK 799 >UniRef50_C0CPC7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CPC7_9FIRM Length = 1111 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 88/664 (13%), Positives = 187/664 (28%), Gaps = 69/664 (10%) Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 + +E+ ++ + ++ +P +EV+ +L ++ + + Sbjct: 282 KNPELNFLEQHLFRYHRVVYEREPQALALTRWENPLQEVKGTAAEILRLV-REKGYRYGE 340 Query: 408 IIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 I V+ D+ SY + + VF A +PY I ++ + +P +E + + + RF Sbjct: 341 IAVITGDLPSYGTYARQVFSQA----QIPYFIDEKHSILMNPFVEFLRAAVEMIVDRFSY 396 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 E L ++ E + L +V GIR P + Sbjct: 397 ESCFRYLRCG----MSSLSLEEIDELDNYVTALGIRGYSKWKETWVRLYPGLDEERILE- 451 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 L R + ++ Q + + E L + + ++ ++E Sbjct: 452 LNRYREQF-LKEISWLVQG---FRGGVKTVRERSCALYQFISD-----NEMQEKLKIQE- 501 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 L D E I ++ + + + V + L L + Sbjct: 502 -------LEFAGRKDKAMEKEYAQIYGIVMRLLDKMVEILGDEKVSAREYQQLLEAGLTE 554 Query: 648 ERISQRFL-AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP----- 701 +++ + V + + R KV+ LG+N+G P+ + G + Sbjct: 555 AKVALIPPSSDQVLVGDMERTRLKEIKVLFFLGVNEGNIPKDSSRGGLLTQMDREFFQEE 614 Query: 702 ----KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ 757 R R+ L Q LY+SY + + + LV + Sbjct: 615 KIELAPDARELLGQSRFYLYLNLTKPQDFLYLSYSQANAK-GEGLSAAYLVGTIQKLFPA 673 Query: 758 SHYLPGDEAL-----NCDESEARVKAHLTCLHTRMPFDP-----QNYQPGERQSYAREWL 807 G + S L + YQ E L Sbjct: 674 LRLRCGQGSSLEGLQRPSGSLDYFLEGLQEYEYGQETKVWRELYRWYQKDESYRPQVNRL 733 Query: 808 PAASQAGKAHSEFVQPLPFTLPETVPL---ETLQRFWAHPVRAFFQMRLQVNFRTEDS-- 862 A + + + L V L+++ A F + LQV R + Sbjct: 734 VEAFFSENPQDRISKAVAKALYGEVSPYGATRLEQYAACAFAHFLRYGLQVTERVQYEFS 793 Query: 863 -------EIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFG-- 913 E F + + +L E+ +E L G+ + Sbjct: 794 GMDLGNVMHKALEIFARKVRDQRLSWGELSREDRERLVSESLQEVTEDYGNTILHSCARN 853 Query: 914 ----EIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRP 969 + L +++ + E+ + + + + + + Sbjct: 854 EYLIRRTQRVLNRTAWALQEQLRRGDFQPEGFEVAFEGGRI---DRVDICEDENKVYVKV 910 Query: 970 SLLS 973 Sbjct: 911 MDYK 914 >UniRef50_B0NKJ8 Putative uncharacterized protein n=8 Tax=Clostridiales RepID=B0NKJ8_EUBSP Length = 1141 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 88/664 (13%), Positives = 185/664 (27%), Gaps = 83/664 (12%) Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 +E + + SI HV +P+ E + + A++ R+I V+V++ Sbjct: 291 LERNLFRYHGKGFGKEPESIGIHVTRNPKEEAMAVAGAIRALV-RKEGYRYREIGVIVSN 349 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 +D Y ++ F +P + +R+ + +E SLL + + F E V L Sbjct: 350 MDVYGDDLEQAFAMYE----IPAFMDHKRSILLNSFVEYIRSLLDMAEQNFTYESVFRFL 405 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGI----RWGIDDDNVRELELPATGQHTWRFGLTR 530 + + + L +V GI RW + R + R Sbjct: 406 RTNL----AGFNFDEVDRLENYVIGLGIKGYKRW-QEKWVRRLKGMEEEELEALNHC--R 458 Query: 531 MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPV 590 ++L V D ++ + + + M L + + L Sbjct: 459 IIL-------------VEKVDGLLYVLKQRSKTVRDITMALYEFMVREDLQVKLAALEER 505 Query: 591 CRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERI 650 + + + + + + + V L+ L L++ R+ Sbjct: 506 FQA------EGKLALAKEYAQVYRIVIELFDKFVELLGDEKVSLNEYCKLLDAGLEEARV 559 Query: 651 SQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK------- 702 + V + R K + +G ND P L G + K Sbjct: 560 GVIPPSVDQVVAGDVQRTRLKDIKALFFVGANDTYLPGSLLRTGLLSERDREKFARERLS 619 Query: 703 --RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 G + + ++ L ++L I Y S D PS L+QEL Sbjct: 620 LSPGGKEQAYIQKFYLYMNLTKPSEQLNIYYSKVSA-DGKSIRPSYLIQELRRLFP---L 675 Query: 761 LPGDEALNCDESEARVKAHLTCLHTRMPF-------DPQNYQPGERQSYAREWLPAASQA 813 L + + + + + F D + + +W Sbjct: 676 LSVQDEEGRALALREITEKMGIGYLIRGFQGNGEGMDAAWKELYTWYKKSPKWQSKVESL 735 Query: 814 GKAH--SEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 KA + L + + + + ++RF F L + R E Sbjct: 736 IKAGYYRRPMDGLTEAVAKRLYGEEFEDSITRMERFQTCAFAHFLTYGLNLQERQEYDFQ 795 Query: 865 P-DTEPFILEGLSRYQ------------INQQLLNALVEQDDAERLFRR--FRAAGDLPY 909 D L R+ + ++ + +++ E + Sbjct: 796 AVDMGNVCHNALERFSRKVEKEGCGWVGLKEEKRASFIDESVEEAITDYGNSVLYSSARN 855 Query: 910 GAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRP 969 + + L ++ A + E A + + + + + Sbjct: 856 EYMIVRMKRMLERTVWALTKQLSAGDFQPSAYEFRFANGKI---DRIDTCEDGDKVYVKV 912 Query: 970 SLLS 973 Sbjct: 913 LDYK 916 >UniRef50_Q03D70 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Pediococcus RepID=ADDB_PEDPA Length = 1192 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 97/713 (13%), Positives = 209/713 (29%), Gaps = 115/713 (16%) Query: 335 LHNIQ--SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR 392 LH ++ SD+L+LE + + +T +S EVE + Sbjct: 284 LHRVRVNSDLLKLEKYWIESSEGQVGGSKQENNAC------VTIFQANSRYAEVEHVATL 337 Query: 393 LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLE 452 + + +DP+L D V+ + YS I+ +F LP + A + HP+LE Sbjct: 338 IRQKMAKDPSLKFSDFSVLTRHLSDYSTIIKPIFDQME----LPIFYDLQIAMKDHPLLE 393 Query: 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYL------RQWVNESGIRWGI 506 +L + F EDV+ LL +L + G+ + +V + GI +G Sbjct: 394 LINALFDIRAHHFRYEDVMRLLKTGLLFPETEDDPHGMDFFKSVHITENYVLKQGI-YGD 452 Query: 507 DDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS 566 ++ + ++ + + + + + + + Sbjct: 453 RWLQKKDWKYSRFND---------------IDEEKQTDEEIEINQRINTVKNYVAETVVP 497 Query: 567 LLMQLNIWRRGLAQERPLEEWL------PVCRDMLNAFFLPDA-ETEAAMTLIEQQWQAI 619 QL+ G+ + L ++L + + A + + + Sbjct: 498 FFNQLSTATTGVEAAKALYDFLIKNGIDQCLLAWRDQWIEEGRLAKAAEPEQTWETFIQM 557 Query: 620 IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLL 678 + E + L + SQ + + ++ + K+V ++ Sbjct: 558 LDEFVDILGDQPFDPDNFMGLLNAGFEGATYSQIPSTLDQILVSESGMVQMVDRKIVFII 617 Query: 679 GMNDGVYPRQLAPLGFDL------------MSQKPKRGDRSRRDDDRYLFLEALISAQQK 726 G D V P Q+ F Q + + + + YL + + Sbjct: 618 GATDRVMPEQIQDNDFLNQDGKNQIDPFLDDDQFLRISNDRQMRQEPYLNYLTFMIGSDE 677 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYI----GQSHYLPGDEALNCDESEARV---KAH 779 L SY +S D E S V+ + + P E + D + Sbjct: 678 LIFSYP-KSGNDGVELKISPYVERIGKHFGIIAQSLPSRPTTEPVRLDPPFIELFIGSNR 736 Query: 780 LTCLHTRMP----------FDPQN------YQPGERQSYAREWLPAASQAGKAHSEFVQP 823 T H DP+ + S + L + + Sbjct: 737 STLSHLIQYARAMHEAKSEADPRWNLIYTILRQSTLGSLTDQLLSSLEYKNIPEKLKPEI 796 Query: 824 LPFTLPETV--PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT-------------- 867 + +T+ + L+ F+ + F + L++ R P Sbjct: 797 VEGLYGDTIYASVSKLEEFYRNEYSYFLKYGLKLQERETSDLSPADTGQYFHAAMDKLIK 856 Query: 868 ----EPFILEGLSRYQINQ---QLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQ 920 E +++ QI Q +L+ + + ++ +R + Sbjct: 857 MITTENLNFNEVNQEQIEQIAKRLVQQMEQDQQFDQFNGTYRMG----------FLRKQL 906 Query: 921 CQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLS 973 + +Q + + + + I Q+ G + L ++ Sbjct: 907 DRTVQAMVEAIFKQLARTRMRPI----ASEQLFGQIGSQSGLPALNFKVGEGK 955 >UniRef50_UPI00019738F1 ATP-dependent nuclease subunit B n=2 Tax=Clostridium RepID=UPI00019738F1 Length = 1184 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 132/983 (13%), Positives = 276/983 (28%), Gaps = 168/983 (17%) Query: 65 PASFIWDMFVRVLPEIPKE-----SAFNKQSMSWKLMTLL----PQLLER-EDFTLLRHY 114 P F ++ P + + +++++ L P +L+ +LR Sbjct: 39 PEQFTMQTQKDIVAMHPCHGVRNIDIVSFERLAYRIFEELAVETPAVLDDMGKSMVLRKV 98 Query: 115 LTDDSDKRKLF-----------QLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQA 163 + +LF +L S ++ F QY + + L + G L + + Sbjct: 99 AAGRKKELRLFGSHLDKSGFIGELKSMMSEFF-QYGIT-GEALKEMAEGTQSAMLRQKLS 156 Query: 164 WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVF-ICGISALPPV 222 + L++ EYT R + ++ L + V + G + PV Sbjct: 157 DMSELYEGFREYTKD-------RFIAKEEILDILCRVIPRSELIKDSVVTLDGYTGFTPV 209 Query: 223 YLQALQALGKHI-EIHLLF-TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 + L+ L + ++ + NP R + Sbjct: 210 QYRLLELLLTYCRQVTVTITMNP----------------EENPYREKPIQHLFHLSSHTV 253 Query: 281 ENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQS 340 L S G + LL + F + L I+ Sbjct: 254 CRLTDLAASSGAGRTEDILL-------------------KGDCPRFRESPE---LSKIER 291 Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLD-----PLDSS-ITFHVCHSPQREVEVLHDRLL 394 ++ R +E + ++ P S + H +P RE++ + ++ Sbjct: 292 ELFRYGRRGEQKEGKQEEGKRKEEKQNQTGCGAPHRKSGLILHQAENPIREIQFVCAQI- 350 Query: 395 AMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAF 454 L + RDI V+ + YS + F + +P + ++ +P++E Sbjct: 351 ERLVKKEGYRYRDIAVVTGALSDYSGELTRQF----QENKIPCFLDSKKNILGNPMVELL 406 Query: 455 ISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVREL 514 + + F E V L + E L L +V GIR ++ E Sbjct: 407 RASMETLTEDFSYESVFRYLKTGMAVE----DVEKLSRLENYVKALGIRGYKRWNSRWER 462 Query: 515 ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 + L E + P E + + + L + Sbjct: 463 VYRDGEL---------LNLDELNEFREQIVAPFRPLREVFSDRSSS---VREMTAALVHF 510 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 + E L EW +M +AE E + I + + V Sbjct: 511 LEEIHAEEKLGEWEKRFSEM------GEAELEKEYSQIYGLVMELFDRVAALLGDEVVSR 564 Query: 635 SLLRDELAQRLDQERISQRF-LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 L ++ ++ + V L R K + +G+NDG+ P + G Sbjct: 565 REYAQILDAGFEEIKVGLIPAVVDRVVAGDLTRTRLSHIKALFFVGVNDGIVPSAVRRGG 624 Query: 694 FD------LMSQKPKRGDRSRRDD---DRYLFLEALISAQQKLYISYIGRSIQDNSERFP 744 L+ +K + R++ +R + L++++ S P Sbjct: 625 ILTEAERRLLKEKGVELAPTAREEGFLERLYLYLVMTKPSDTLFLTWSQTSAA-GKGLRP 683 Query: 745 SVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD---PQNYQPGERQS 801 S L+ ++ + DE S + L P+ + R Sbjct: 684 SSLIGQVKSLFPELTETRSDEFEEAAWSLPAGRRALIGGLRERSASSSQPKFLELYRRFY 743 Query: 802 YAREWLPAASQAGKAH--SEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMR 852 + + +A S + + T + + ++R+ A F Sbjct: 744 TDSGYREMTRRLVEASFCSYEDRGIGRTAAGRLYSPILRGSVTRMERYAACAYAHFLNFG 803 Query: 853 LQVNFRTEDSEIPDT---------EPFI------------LEGLSRYQINQQLLNALVEQ 891 L++ R E + F L R ++ + ++A+ + Sbjct: 804 LELRERREYELAAADIGNMFHSSIDLFFKTMKEEGRSFRTLSPEDRKELVGRCVSAVTAE 863 Query: 892 DDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL------ 945 + R G + + L +++ E+ Sbjct: 864 YGNTVVSASSRNE------YLGRRVERITDRTVWALTEQLKKGDFEPAGFELTFTPADNL 917 Query: 946 --------ACNGVQITGWLPQVQ 960 V + G + ++ Sbjct: 918 KAMKIPVSRTEAVHLQGRIDRMD 940 >UniRef50_C4Z990 AddB n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z990_EUBR3 Length = 1156 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 89/656 (13%), Positives = 187/656 (28%), Gaps = 80/656 (12%) Query: 342 ILELENRAVAGVNIEEFSRSDNKRP---LDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 IL+ R + + ++ I P++E+ + R+ ++ Sbjct: 273 ILDKNYRLAENEELSFMEQQLFRKRRSSFKKAPKHIHIDCLRDPKQELTKIARRINELV- 331 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458 + L RDI ++ D++ Y+ +++ +F +PY I + HP +E S+ Sbjct: 332 RNENLRYRDIAIVTGDVNIYAGYVREIFDKY----NIPYFIDATQEILFHPFIEFIRSIP 387 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518 + F ++ V L +++ + L +V G+R G + + + LP Sbjct: 388 DIAAQNFSADAVFRFLRCGFT----ELSASEIDVLENYVLACGVR-GKSAWDKKWVRLPK 442 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 G LL + E + V + ++ + L Sbjct: 443 HK-----AGYDIELLNQSREYIMELLKPVYQVFSDKKS------TVKDYVLAIYKLIVLL 491 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 L + D D I + + + + + + Sbjct: 492 DIPDKLAKKEQALLD------AGDQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFT 545 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 L LD ++ V I + R KV+ G+NDG+ P+ G Sbjct: 546 QILDAGLDAADVAVIPPGYDTVTIGDIERTRLTNIKVMFFAGVNDGIVPKAAGRGGIISQ 605 Query: 698 SQKP---------KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748 ++ G R + R+ + ++LYISY + PS L+ Sbjct: 606 YEREALKELDIELAPGAREQAFIQRFYLYLNMTKPSRELYISYTRLD-SEKKAAQPSYLI 664 Query: 749 QELIDYIGQSHYLPGD--EALNCDESEARVKAHLTCLH----------TRMPFDPQNYQP 796 L + + E L S +L M +D Sbjct: 665 GILKGMFPELVVTETEDVEQLLDISSRQSALDYLLSNEVDDRWCEIAAAVMFYDASVSDA 724 Query: 797 GERQSYAREWLPAASQAGKA-----HSEFVQPLPFTLPETV-------PLETLQRFWAHP 844 G+ + + + P+ + ++ + ++F Sbjct: 725 GDGNEVDDKAFTQKNSVERLINARFEHYSKDPISRNVARSIYGRHMEGSITRFEQFARCA 784 Query: 845 VRAFFQMRLQVNFRTEDSEIP-DTEPFILEGLSRY--QINQQLLN---------ALVEQD 892 F L++ R E D E L RY +++++ + + + Sbjct: 785 YAHFLNYGLRLTEREESGFTSLDMGNIYHEALERYSKKLDRESTDWFSVTDAKRDELAME 844 Query: 893 DAERLFRRFRAAGDLPYGAFGEIFWET---QCQEMQQLADRVIACRQPGQSMEIDL 945 + + G Q + L ++ + E Sbjct: 845 AINEVIDEYAGFGIFDTAESQHSISHMKAVFKQTVWALTTQIRRGSFVPERFEFSF 900 >UniRef50_B9XFA2 ATP-dependentnuclease subunitB n=1 Tax=bacterium Ellin514 RepID=B9XFA2_9BACT Length = 1129 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 163/1044 (15%), Positives = 299/1044 (28%), Gaps = 154/1044 (14%) Query: 65 PASFIWDMFVRVLPEIP-----KESAFNKQSMSWKLMTLL----PQLLERED-FTLLRHY 114 P + + ++L + + + +++ + L PQ+L+ E +LR Sbjct: 40 PKQTTYQLERQLLAYPSVAGYTRLQILSFERLAFFVFNSLQKPPPQMLDEEGRLMVLRSL 99 Query: 115 LTDDSDKRKLFQLSSKAADLFDQYL--VYR--------PDWLAQW-ETGHLVEGLGEAQA 163 L D+ KLF+ S++ A F Q+L V R P+ L + E H VEGL Sbjct: 100 LARKRDELKLFRASARLAG-FAQHLSRVLRELQHHQLTPESLHELAEQVHAVEGLSYKLH 158 Query: 164 WQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVY 223 L L +Y L + F + P +++ G + L P Sbjct: 159 ---DLGTMLRDYLDWLQAHHLQDGDNLLTFATEVLREPHAPLNFGE-MWVDGFTDLSPQE 214 Query: 224 LQALQALGKHIE---IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDS 280 L L + H+ + D ++ L DR F Sbjct: 215 LDLLAQIIPHVPQATLTFCL---------DQVPTERISWLSNWSVPRRTYDRCQKRFAGL 265 Query: 281 ENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQS 340 N LLA + R L++ Sbjct: 266 PNVELSKE----------LLAR--HMNRS--RFLNNSP---------------------- 289 Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 L + + F + L S+ C +P+ E + +L + Sbjct: 290 ----LHHLEQHWAEPKPFVDAATAARPYSLRESLRVITCTNPEAEATLAAREVLRFVRSG 345 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 R++ ++V +D+Y + F +PY + R A HP+ E + L Sbjct: 346 G--RFREVTILVRKLDNYHEALANTFKRYD----IPYFLDRREAVSHHPLAELTRNALRT 399 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 + +D A L ++ A + + L G W L Sbjct: 400 VAFSWSRDDWFAALKTGLVPA----EDTEIDRLENEALARG--WKGSTWQHPILIHDNPE 453 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 W L R ++ ++++ L L + + L Sbjct: 454 LTEWAENLRRKIV--------PPFKNLAVNMGQQSNRPSG----RHLAAALRDFWQSLKV 501 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 + L+EW ++ P + +Q A + A + +PL Sbjct: 502 DETLQEWSDAEIAGSDSQLAP-----PIHLTVWEQMNAWLENVELAFPTETLPLREWLPI 556 Query: 641 LAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 L L + A V I + R+ ++ +LGMN+GV+P + Sbjct: 557 LEAGLANLNVGVIPPALDQVLIGAIDRSRNPDIRLALVLGMNEGVFPAPPEQSVLLTDAD 616 Query: 700 KPKR---------GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 + + R + +RY A A+Q++ ++ PS + + Sbjct: 617 REELKKKDVELGASTRQQIGHERYYGYVACTRARQRVVLTSAIFDAA-GKPLNPSPFLSQ 675 Query: 751 LIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAA 810 L ++L+ +S + L P + G L A Sbjct: 676 LKQLFPSLETETFPKSLDWRKS-EHANELIVPLLRNQVQSPISKVQGVSALNKFPALAAL 734 Query: 811 SQAGK--AHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTED 861 + K + + + L L E + + +++F A P + F L+ R + Sbjct: 735 RERLKHFSTTPTEESLSPELAERLYGPALRTSVSRMEQFAACPFKFFVHSGLRAEERKK- 793 Query: 862 SEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC 921 F L+ + ++L + EQ E R + I Sbjct: 794 --------FELDIRDQGNFQHEVLASFHEQLKTEN-KRWRDISPQEARERIKSIALTMMV 844 Query: 922 QEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLS---VAQGM 978 L R + + L + GW+ Q + P + Sbjct: 845 SYRDGLLQVSEETRFTARVLTESLQDFVETLVGWMGQQYA-----FDPKAVELPFGEDLF 899 Query: 979 QLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVL 1038 W L G L + +E A L +++ Y+ +L Sbjct: 900 PAWELEL------GKDHKLLLHGRIDRIDICR-ESEDAEEALCVVVD-YKSSQKQLDPLL 951 Query: 1039 PESGGAWLKTCYDAQNDAMLDDDS 1062 E G Y D Sbjct: 952 MEHGLQLQLAAYLNVLRHWPDPRP 975 >UniRef50_A9KTE7 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Clostridium phytofermentans ISDg RepID=ADDB_CLOPH Length = 1147 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 100/676 (14%), Positives = 192/676 (28%), Gaps = 72/676 (10%) Query: 343 LELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 N + R K + D I+ P E + +L + Sbjct: 282 YRFHNSMALSALEKNIFRYPYKSFTEEQDD-ISITAAKDPMAEARHAVIEITRLL-REEE 339 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 +DI ++ ++ Y ++ +P + ++ ++PV+E S L + Sbjct: 340 YRYKDIAIVSGAMEVYGDIVK----RELELAGIPCFVDHKKNILTNPVVEFLRSALDVVT 395 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 F E + L + D T + + +V GIR E E + Sbjct: 396 HNFDYEAIFRFLKCGLT----DFTMDEIDLFENYVIAFGIR----GKYRYEHEWERKYKT 447 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 582 + L ++ Y + + P E + + + L E Sbjct: 448 NYEVDLEKI--NYV---RECILKEFTPLYE---TLTSKKSSVRECVNALYNLLCTYHIEE 499 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 + ++ + D I + I + D +PL RD L Sbjct: 500 KIHIFVEKFKAQGE---KEDKLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLKEFRDILD 556 Query: 643 QRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFD------ 695 + ++ + + + + R K + LG+NDG+ P+ G Sbjct: 557 TGFREAKVGLIPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKANPGGGILSDAERQ 616 Query: 696 LMSQKPKRGDRSRRD----DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 L + ++R + YL+L L Q KLY+ Y + S L+ ++ Sbjct: 617 LFADHEIELSPTKRQTAYLTEFYLYLN-LTKPQNKLYLYYSKLDV-SGKSIRASYLLGKI 674 Query: 752 IDYIGQSHYLP------GDEALNCDESEARVKAHLTCLHTRMP-FDPQNYQPGERQSYAR 804 + DE L D+ + + + L P + Y Sbjct: 675 SKIFPKLKIYDADRKSREDELLGTDQGLSYLISVLRDYEGEQPKLWREVYHLYVSGQIKG 734 Query: 805 EWLPAASQAGKAHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNF 857 G + + Q L + + + ++++ A F Q L + Sbjct: 735 RISLDKVLQGVFYQNYEQGLTKEVARKLYGETLLGSVTRMEKYAACAFAHFLQYGLSLEE 794 Query: 858 RTEDS-EIPDTEPFILEGLSRYQ-------INQQLLNALVEQDDAERLFRRF-------R 902 R E +PD E L R+ I+ L V ER R Sbjct: 795 RQEYKISMPDIGSLFHEALERFSKALKELDISWHELPEDVRISLGERCVREAVENFGNGI 854 Query: 903 AAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNG--VQITGWLPQVQ 960 + + L ++ S E + + + G + +V Sbjct: 855 LESSKRSAYLATRVERILQRTTKTLTHQLQQGVFEPGSYEQYFSHADRYLNLRGRIDRVD 914 Query: 961 ---PDGLLRWRPSLLS 973 DG L + Sbjct: 915 LYEQDGKLYVKVIDYK 930 >UniRef50_B0PD61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PD61_9FIRM Length = 1106 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 105/628 (16%), Positives = 191/628 (30%), Gaps = 67/628 (10%) Query: 355 IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVAD 414 I + + P D + C E+E + + A++ + RDI ++ Sbjct: 279 IAQAYPQETPAPYDGAPDGVQIAACEDVYDEIEYIAGEICALV-REKGYRYRDIALIGRA 337 Query: 415 IDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALL 474 ++ Y ++ VF +PY R Q HP++ L RF SE VLAL Sbjct: 338 LEPYLVPLETVFARYD----IPYFADRRVDIQVHPLVNGIFCALDAVRGRFDSEAVLALA 393 Query: 475 DVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 I L + WG+ + + Sbjct: 394 KT----CISGIDAVEAGLLENYC----FTWGVSGTVWAAPFVNHPDG-----------ME 434 Query: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 A Q + A L+G L L L G R + +L Sbjct: 435 GAFSDEQ-----RERLSRINAARAALIGPLERLADSLRG-CDGRGFARAIYSYLEQVDAA 488 Query: 595 --LNAFFLPDAETEAAM-----TLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 L + E +A + ++ GA G ++PL+ L D L + Sbjct: 489 CRLRDYAEGMEEGDARRFLDLSAQVWDAVIGLLDVFGGALAGISLPLARLTDLLRLGVST 548 Query: 648 ERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR--- 703 I V T +R + V ++G+N+GV+P +P G +++ + Sbjct: 549 VDIGSLPQTIDQVIAGTADRIRPNAPRAVFVIGLNEGVFPLWSSPSGIFSAAERERLRTQ 608 Query: 704 -GDRSRRDD-----DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYI-- 755 D R + +RY AL A + L+++Y R + R S V E+ + Sbjct: 609 GVDLLRTPEQTALFERYYVYFALTQASEALWLTYPLRDAA-GAARTASSAVDEVRALVGA 667 Query: 756 --GQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQA 813 S A + + H + + A +A Sbjct: 668 PARGSAGGALARAAGERSAFDAMMRHWRDDTPETAVLRSYFTEQDPARIRTLEALGAPRA 727 Query: 814 GKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP----DTEP 869 F + + ++ P F ++ L++ R P Sbjct: 728 FSLEGRGAARALFGTRMRISPSRAELYYECPFSYFCRVGLRLRPRRRAEFNPIESGSLIH 787 Query: 870 FILEGLSRY-------QINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQ 922 +LE + + Q+N +LL + + L R ++P A + + Sbjct: 788 LVLEKIVKKYGGRGLAQLNGELLRSEITAIIDADLKARIANYDEMP--ARFKYLFRRLVG 845 Query: 923 EMQQLADRVIACRQPG--QSMEIDLACN 948 +Q+L +R+ + +L Sbjct: 846 TIQRLIERLALEFGQSAFEPAAFELPIG 873 >UniRef50_Q0AXV2 DNA helicase/exodeoxyribonuclease V, subunit B n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXV2_SYNWW Length = 1124 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 103/693 (14%), Positives = 202/693 (29%), Gaps = 110/693 (15%) Query: 337 NIQSDILELENR------AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLH 390 +Q +I++++ R + ++E + + +I + EVE L Sbjct: 261 ALQEEIIQVDPRPAEMLKSPEINHLEAELFAYPGKTFAKKPQNIELFAASNIYSEVEALA 320 Query: 391 DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV 450 L + + +D+ V+ D+D Y I+ F D +P + +R SHP+ Sbjct: 321 AEFLLLARQ--GYRWKDMAVVCHDLDRYGSLIRRTF----RDYGIPCFMDRKRDIMSHPI 374 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGI---RWGID 507 +E ++ L + + EDV L D+T + + L + E GI +W D Sbjct: 375 IELILAALEILSRGYRYEDVFTYLKTGF----SDLTVDEVEILENYALEYGIKGNKWKED 430 Query: 508 DDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASL 567 L Q R+L +E + + + Sbjct: 431 FSYGDAESLIELNQ-------KRLLFTKPLEDLGVMLKGN--------------NTIREM 469 Query: 568 LMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ 627 L + LE+W E + + + I+ + + Sbjct: 470 AQALFAFLERENIYSKLEKWTNDL------LARGFLEEASESSQLWNAMIEILKQMVEIM 523 Query: 628 YGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 V L + L I V + + +S K + ++G+NDG+ P Sbjct: 524 GEQKVNLKEFKRILEAGFLSLEIKIIPTTVDQVLLGDIQRSKSHDIKCLYVIGVNDGILP 583 Query: 687 RQLAPLGFDLMSQKPKRGDRSR---------RDDDRYLFLEALISAQQKLYISYIGRSIQ 737 G ++K ++ +++R+L AL +++Y SY Sbjct: 584 SLGREEGILSETEKEALQEKGLDLGYEREMIWEEERFLIYSALAKPAERIYFSYALADE- 642 Query: 738 DNSERFPSVLVQELIDY-----IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ 792 + PS+L+ +L + + L + HL D + Sbjct: 643 EGRALRPSLLIDQLRMIFPSLSLKTNLLEDRQWQLQMVATPESSFKHLVEKLRL-GLDGK 701 Query: 793 NYQPGERQSYAREWLPAASQAGKAHSEFVQPL-PFTLPETV---------------PLET 836 + Y W + +Q L PE + + Sbjct: 702 ELEDFWWDVY--RWYFEQESWQCSRKLLLQGLFHQNQPEPIEPQVSRRLFGTPLRSSVSR 759 Query: 837 LQRFWAHPVRAFFQMRLQVNFRTEDSE-IPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 L++F + P F + LQ R PD + L + + N E Sbjct: 760 LEQFVSCPFAHFVRYGLQPQERKNYELNSPDLGLLFHDSLLHFSHKLRENNRQWLDLSKE 819 Query: 896 RLFRRFR----------AAGDLPYGAFGEIFWETQ----CQEMQQLADRVIACRQPG--- 938 + G + + + L + + Sbjct: 820 ECYAIIDTVVDEIVPSFGRGIFNSHPRYQYLLNRLKRISRRAVWILTEHIQQGDFKPWDY 879 Query: 939 ----------QSMEIDLA-CNGVQITGWLPQVQ 960 ++EIDL + + G + +V Sbjct: 880 EVAFGRGGMLPAVEIDLENGEKLILEGRIDRVD 912 >UniRef50_Q03NA6 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Lactobacillus brevis ATCC 367 RepID=ADDB_LACBA Length = 1201 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 101/739 (13%), Positives = 205/739 (27%), Gaps = 109/739 (14%) Query: 306 LGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKR 365 L + + + +D + +D+ L+ A + + K Sbjct: 257 QSAKLYQQLYMVAQANRVPVLIDQQAKT--ARVSADLQALDTYWQASQTLSPQPSAVEKP 314 Query: 366 PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 I + EV + ++ ++ RD +V+ +D+Y I + Sbjct: 315 TH------IQIVQAANRYVEVSRVATQIRQLVATG-NYRYRDFLVLTRHLDAYQTVIDPI 367 Query: 426 FGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDI 485 F + +PY HP +E +L + + DV +L +L R Sbjct: 368 F----QAQAVPYFDDADIRMADHPFVELLNALFDVQRRNYRYADVFRVLKSELLLPRDAD 423 Query: 486 TE--------EGLRYLRQWVNESGIR----------WGIDDDNVRELELPATGQHTWRFG 527 E + L +V ++G+ W + V + + T Sbjct: 424 GELMAVPAYRQALALTENFVLKNGLEGQHWWTQDKDWVYNRFAVGDGGVQTTRDDQISAQ 483 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 + R+ + + + + L + L W Sbjct: 484 INRI-----RRFVKQTLPPFFARLKVAATYTDAAAVLYQFVA-------NAGVSERLMTW 531 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQ 647 A D + I+ E L + L Sbjct: 532 RD------QAIAAGDLTKAGQPEQTWAAFCDILDEFHTILGDLPTVLPDFQALLQAGFAG 585 Query: 648 ERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR 706 + SQ V I +++ K+ ++G P P L++ ++ Sbjct: 586 AKFSQIPSTLDQVVISESGIVQANNRKITFIMGATADTMPDNQIPT--TLLADNDRQDLS 643 Query: 707 SRRDD-----------------DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749 +R + YL A +S ++L SY S S S V Sbjct: 644 ARLQQVDDGTYLRDDAATQLAGEPYLNYLAFMSGSERLIFSYPAMSDDARSGLQLSPYVA 703 Query: 750 ELIDYIGQSHYLPGDEALNCDESEARV--KAHLTCLHTRMPFDPQNYQP---GERQSYAR 804 + DY G S + + DE+ T H + Y Sbjct: 704 RIKDYFGLSIDIAAANPVAEDEAILPFVGTRRTTLRHLVQASHDSQLREVPLSRSWLYVL 763 Query: 805 EWLPAASQAGKAHSEFVQPL-----PFTLPETV-----------PLETLQRFWAHPVRAF 848 L G+ ++ + L P L + + L+ ++A+P F Sbjct: 764 NLLRTDPTYGELTTKLLGSLSYRNVPTQLTPDIVTQLYGTKINTSISKLEEYYANPYAYF 823 Query: 849 FQMRLQVNFRTEDSEIPDT--EPF--ILEGLSR----YQINQQLLNALVEQDDAERLFRR 900 + L + R + P + E F L+GL + ++N L+ ++ + + + Sbjct: 824 LKYGLNLQERDVFALSPASTGEFFHATLDGLMKLVNDQKLNLAALDDQQLREMTDEVMAK 883 Query: 901 FRAAGDLP----------YGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGV 950 + P G + +T Q + L ++ + + E+ Sbjct: 884 LLDTTENPQFAILESSHRMGYIRQQLMKTMRQMAKTLQEQSKRTKLRPKRTEVQFGLGDE 943 Query: 951 Q-ITGWLPQVQPDGLLRWR 968 + + V + R Sbjct: 944 RGLAALSFDVGKRRQVTVR 962 >UniRef50_A8SJB4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJB4_9FIRM Length = 1152 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 99/674 (14%), Positives = 235/674 (34%), Gaps = 92/674 (13%) Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 + +E+ S + + +I + EV + + + +++ DI Sbjct: 281 SEDLSFLEKNIGSFSPKVYFKDSENIRILKFKNIYDEVSFIAEEISKLVKI-KGYRYNDI 339 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 + + +D YS I+ VF + Y + ++ + +P++ +S+L + D + + Sbjct: 340 TLCMRSLDEYSYIIERVFDDY----NIDYFLDEKISIMENPIIILILSILDMKDKNYSYD 395 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGI---RWGIDDDNVRELELPATGQHTWR 525 V L + +++E + L +V +GI RW D+ +W Sbjct: 396 SVFRYLKSGLT----GVSDEDIFLLENYVIANGIKGNRW-FDE--------------SWN 436 Query: 526 FGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL------ASLLMQLNIWRRGLA 579 + + + + ++ +E ++ + +L + + + + Sbjct: 437 KSI------VHSVEEESDDEKLVKINEIKNIVISPIKNLHEKLKGRNTVKDICKYLYEFT 490 Query: 580 QERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 E L + + ++N + + + + A++ E + + + S + Sbjct: 491 LEIGLFDRINNL--VMNFQNEGNLYKAKEYSQVWGSFTAVLDEMVEFMGEEKIAYSKFIN 548 Query: 640 ELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS 698 + L+ + + V I T+ M+ K+ +LG+NDG +P+ + DL+S Sbjct: 549 LIKTELENIELGIVPPSKDEVFITTVDRMKKPSTKIAFVLGVNDGNFPKNIVDN--DLIS 606 Query: 699 QKPKRGDRS-----------RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 747 + K ++ + D+++L + A++KLYI++ S + S Sbjct: 607 ENEKESLKTMGFNFSNNNLLKTTDEQFLSYKTFSIAKEKLYITFP-ISDLEGKSLLVSRF 665 Query: 748 VQEL-----------IDYIGQSHYLPGDEALNCDESEARVKAHL--TCLHTRMPFDPQNY 794 V+++ IDY+ + E + + + +++ + D N+ Sbjct: 666 VKKIKFIFENLEVESIDYLKDFSIMDIFETFSKERLYQILVSNIEALNSNKLSENDKFNF 725 Query: 795 Q-------PGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE-TVPLETLQRFWAHPVR 846 + + Y E L K F V + L+ F P Sbjct: 726 REIIDFLIEDKDYKYKIEILKDKLNYKKETENIKDYTSFLYESGNVSISKLENFMRCPFS 785 Query: 847 AFFQMRLQVNFRTEDSEIPDT------EPFI--LEGLSRYQINQQLLNALVEQDDAERLF 898 F L+ R P + F +G+ I+ +++ Q + E+L Sbjct: 786 YFINYGLRAKEREVYDFSPADYGTYCHKIFDDFFKGIFENNIDWNIIDREFIQREVEKLT 845 Query: 899 RRFRAAGDL-----P-YGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQ- 951 ++ + P Y F I + + ++ +A++V E + ++ Sbjct: 846 KKMAEKSNFILESSPKYKYFSTITQKNIVESIEIMAEQVRRGNFVPTGFETEFGDESIKP 905 Query: 952 ITGWLPQVQPDGLL 965 IT L + L+ Sbjct: 906 ITYTLKNGKEIKLV 919 >UniRef50_C9LAG6 ATP-dependent nuclease subunit B n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAG6_RUMHA Length = 1144 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 82/689 (11%), Positives = 190/689 (27%), Gaps = 103/689 (14%) Query: 336 HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLA 395 Q + A N+ + R + ++ + +P E+E+ + Sbjct: 278 GEYQGRFKDNPPMAFLEKNVFRYRRKKYPK----QQDAVQIYEAQNPASEMEMTAGEIRR 333 Query: 396 MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFI 455 ++ RD V+ D+ Y+P A A +P I ++ + +P +E Sbjct: 334 LVRT-KGYRYRDFAVITGDMQVYAPAAA----RAFARYEIPCFIDEKHSVFLNPFVEYLR 388 Query: 456 SLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELE 515 + + + F E + +L + DI+ E L +V GIR G Sbjct: 389 AAVDMIVENFSYESIFRMLRCGL----NDISTEEADRLENYVIAMGIR-GFSR------- 436 Query: 516 LPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQL---- 571 W+ R G ++ + + A LV ++ Sbjct: 437 --------WQQEWVRSYRG----------ENPEECVQIDKIRASLVEKWEPFYKKMKTPD 478 Query: 572 ---NIWRRGLAQERPLEEWLPVCRDMLNAF-FLPDAETEAAMTLIEQQWQAIIAEGLGAQ 627 + L Q + ++ F + + I + ++ + + Sbjct: 479 ASVRTYTEALYQYITANKIQEKLKEFTRNFEAEGNLSLVKEYSQIYEIVMNLLDKLVEIL 538 Query: 628 YGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 V + ++ L L + ++ V + + R K+V +G+N+G P Sbjct: 539 GDKKVRIREFKEILEAGLSEAKVGIIPPTSDQVLVGDMERTRLKDIKIVFFVGVNEGKIP 598 Query: 687 RQLAPLGF--DLMSQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIG 733 ++ DL ++ K + ++ L ++ Sbjct: 599 KEQQAGKLLSDLNREELKGSLKERGLSLAPTAKENLYTQKFYLYLNLTKPSER-IYLSYS 657 Query: 734 RSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQN 793 R PS LV ++ + ES+ L+ + Sbjct: 658 RLSSSGEAMSPSFLVAQIQKLFPDAVREWDVPL--FAESKYGALDRLSEEMRKQDRTSPV 715 Query: 794 YQPG-ERQSYAREWLPAASQAGKAHS--EFVQPLPFTLPETV-------PLETLQRFWAH 843 ++ + +E+ ++ A + + + E + L++F Sbjct: 716 FEELMSWFTSQKEYGELVNRLIDAAYYVNPQESISKGVAEALYGTELSNSASRLEQFAKC 775 Query: 844 PVRAFFQMRLQVNFRTEDS-EIPDTEPFILEGLSRYQ------------INQQLLNALVE 890 F L + R + D + L + + + + L E Sbjct: 776 ACSHFLSYGLMLRERVRYEFSMADMGTLLHNSLDLFARKVREQGKSWVDLEDEERDTLAE 835 Query: 891 QDDAERLFR--RFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA-------------CR 935 E + + + + L ++ + Sbjct: 836 DCVTEVVEKSGETILLSSARNAYTINRVKRMVKRSVWALQKQLKQGEFYPALTEWAFGEK 895 Query: 936 QPGQSMEIDLACN-GVQITGWLPQVQPDG 963 S+ DL + + G + ++ Sbjct: 896 DNIDSLNFDLESGQKLHLKGRIDRIDVCQ 924 >UniRef50_C4V2E4 ATP-dependent deoxyribonuclease subunit B n=2 Tax=Selenomonas RepID=C4V2E4_9FIRM Length = 1198 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 129/830 (15%), Positives = 223/830 (26%), Gaps = 151/830 (18%) Query: 171 ALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGL-PSRVFICGISALPPVYLQALQA 229 L +L R + +E L + P L + +++ G P L +A Sbjct: 163 ELATIMDELAARMEGRLTDHTDRMERLAAQLIDAPFLRGAELWVDGFDFFNPQELAVFRA 222 Query: 230 LGKHIE-IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFN 288 L + ++ +H+ T +D EN Sbjct: 223 LFRVVDTVHVSLT------------------------MDGRDDGTHVFTNLPENIYDTGL 258 Query: 289 SDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENR 348 + L + ++ + S E+ + Sbjct: 259 FARSYQTMHLL-----------QQIFTEEQPSAEIGIRLMPVQ--------------HRA 293 Query: 349 AVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 G+ + E + D SI +P+ EVE +L L D R+I Sbjct: 294 RTEGLRLLEAQLFGHGHITPAKDDSIRIVEAANPRLEVETAAADILR-LARDNGYRYREI 352 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 V+V D+D Y + F D +P+ + +R HP+ E ++ + + E Sbjct: 353 AVLVRDVDLYGDLLSLAFA----DCGIPFYLDVKRPSAHHPLAELLRAVAQMTWRGWAYE 408 Query: 469 DVLALLDVPVLAARFDITEEG-----------LRYLRQWVNESGIRWGIDDDNVRELELP 517 V L +E + L + GIR E Sbjct: 409 TVFRALRTGFFPLLGTEEDEDAPPLCADWQEAVDRLENYCLAYGIR----------SESQ 458 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP-YDESSGLIAELVGHLASLLMQ------ 570 T W F R+ + E D IAE + L L + Sbjct: 459 WTATEPWDFVQRRVTEHELHLDEEEERLREEQWLDHLRRRIAEPLSLLTGHLRRHESTAR 518 Query: 571 -----LNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLG 625 L + L + L W AA I A+ + + Sbjct: 519 VRTKALYDFLDELCVPQTLRLWSETADR------EGRLADAAAHRQIWSSCMALFDQLVE 572 Query: 626 AQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGV 684 + D + + L+ LD I+ V + + + V ++G N G+ Sbjct: 573 VRGDDPLSSRDYEELLSDGLDAMSIALIPPGLDHVTVASFDQNSIAGARAVFVIGANAGI 632 Query: 685 YPRQLAPLGFDLMSQKPKRGDR-----------------SRRDDDRYLFLEALISAQQKL 727 PR G ++ G+ + +RY A+ L Sbjct: 633 MPRAGTTSGVFSDTELLFIGESLQTAGADSGHTVFGGRTQQSFLERYQLYRGFTEARDYL 692 Query: 728 YISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD--------ESEARVKAH 779 ++SY S+ D S PS L+ L +P A D + + + A Sbjct: 693 WVSYALSSV-DGSTLAPSPLIARLRRISSSFFSIPLALAGRDDPLLLSAPYPAFSHLTAA 751 Query: 780 LTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV------- 832 L R P + H F+ P ++P V Sbjct: 752 LREKKERGEMPAMWGDVYNWMLQDAVMQPLLRRM--LHGLFLPPREVSIPAPVAARLFTR 809 Query: 833 ------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN 886 L+ F P R F L++ R + + +L Sbjct: 810 DRRLSGSTTRLETFRQCPFRHFAMYGLRLQQRDRYEFQSN---------DFGTLLHGILR 860 Query: 887 ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ 936 E + A + P E E + + Q+ V+ R Sbjct: 861 GYGEWVRSAYGNDWCAALAEAP-----EKIEELLQELIPQVHSTVLMSRA 905 >UniRef50_B1YKM7 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Exiguobacterium RepID=ADDB_EXIS2 Length = 1143 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 111/726 (15%), Positives = 222/726 (30%), Gaps = 97/726 (13%) Query: 303 WGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSD 362 +G R Y+ L+ ++ Q DI + + ++ Sbjct: 239 FGVSQRCYMQLIEQMKERQIAH---------------EDIYYGQTVKFQSTGLRMLEQAL 283 Query: 363 NKRPLDPLDSSIT---FHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 P D +T + Q E E + + ++ +DI +V ++ Y+ Sbjct: 284 LSPGYPPTDEEVTGVTVSAAVNRQVETEAAVRKAIQLV-RHDGYRFKDIAFLVRHLEPYA 342 Query: 420 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 ++ F +PY + R + HP++E ++L + + + E V LL ++ Sbjct: 343 DHLERAFQLYD----IPYFLDQRESMVHHPIVELVHAVLEIVMTGYREESVFRLLKTELI 398 Query: 480 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 539 + L L +V E GI+ G +L+ + + E Sbjct: 399 PLPAEDPRLALDRLETFVLERGIK-GSMWKKPWQLKRRLADEISLTDAEL-QEELELNEW 456 Query: 540 AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 599 Q +++ P ++ + ++ L + L W A Sbjct: 457 RQFLVEAIEPLEK----RFKASKTMSEYTRALYRFLEEHHMTDRLTVWKQ------QALE 506 Query: 600 LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GP 658 + + + + + + A + L + L+ R S + Sbjct: 507 VNELSQAREHDQVYEAVLLLFEQLEAAAPEATLTTELFVQMVETGLESLRFSLVPPSLDQ 566 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYP------RQLAPLGFDLMSQKPKR---GDRSRR 709 V + R KVV LLG NDG+ P + L+ D + + Sbjct: 567 VIATDYVRGRLQQVKVVFLLGANDGLIPLVEDQSKLLSEGDHDFLHDQGIPVGKASLDVF 626 Query: 710 DDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID----------YIGQSH 759 DD+ Y + + + + L+ISY D P+ +V+++ Y ++ Sbjct: 627 DDELYYLYQGVTAPSESLHISYALVDE-DGKALQPASIVKQIKHQLLQDRPVKTYFAEAG 685 Query: 760 YLPGDEALNCDESEARVKAH----LTCLHTRMPFDPQNYQPGERQSYA--REWLPAASQA 813 D+ L S R A L L R P P + R A Sbjct: 686 DHAPDDQLQFVTSPERAAAAAAIELRRLQRRYPIQPSWFDVYNRLLENGRGRERMALFSN 745 Query: 814 GKAHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDS-EIP 865 + +PLP L + + + + A + F + L++ R E P Sbjct: 746 ALFYQNQAEPLPEDLARNLYGDTIKASVSRFETYNACSYKHFARYGLRLKERKLYKFEAP 805 Query: 866 DTEPFILEGLSRYQIN-------QQLLNA----LVEQDDAERLFRRFRAAGDLPYGAFGE 914 D L+ +N + L+ + ++ E++ + A + FG Sbjct: 806 DIGNLFHGALNDLSMNIKASGKRWRELDDQSCSNLAKEAVEKVTPEIQNAILMSSNRFGY 865 Query: 915 I---FWETQCQEMQQLADRVIACRQPG------------QSMEIDLACN-GVQITGWLPQ 958 I + Q + L + + L ++ TG + + Sbjct: 866 IKKKLTDVVEQTAKMLVKQAERSEFEPDLFEISFGNAMFPPLRFTLPDGTEIEFTGRIDR 925 Query: 959 VQPDGL 964 V + Sbjct: 926 VDQATI 931 >UniRef50_C8PVF1 Putative exoribodeoxynuclease V, gamma subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVF1_9GAMM Length = 1524 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 133/686 (19%), Positives = 257/686 (37%), Gaps = 85/686 (12%) Query: 350 VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE----------- 398 + + ++ + RP PLD+SI HVCHS R++EVL ++ L Sbjct: 496 LKQESNKQLENVEKWRP-KPLDTSIAIHVCHSMVRQLEVLRSMIIGWLNYSDMQATPAQI 554 Query: 399 -EDP--TLTPRDIIVMVADIDSYSPFIQAVFGSA--PADRYLPYAISDRRARQSHPVLEA 453 DP DI+V++ DI+++ I+A F LP ++ A+ + + +A Sbjct: 555 PTDPWDRRALSDILVLLPDIETHQNIIEATFPKHVGGDGYQLPAKVTGVVAKDINLLWQA 614 Query: 454 FIS---LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 LL+ +RF +V L + L F + E + + ++G G D+ + Sbjct: 615 ITGYYTLLNRAGARFQRSEVFDWLMLAPLYESFGLNLEQMTRACDLLTQAGFIRGFDELH 674 Query: 511 VRELELPATG--QHTWRFGLTRMLLGYAMESAQ-----------GEWQSVLPYDESSGLI 557 +++ A ++T+ + L R++ G M A G + +P + Sbjct: 675 LQQTLSAADDDYRYTFAYALERLVAGVMMPKATVVSFGEYTNSFGVVEKFVPLTNLTMAD 734 Query: 558 AELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEA------AMTL 611 A++V L + L+ R + L +WL ++ F +T A A Sbjct: 735 ADIVAVLCDIYETLDDNRHLGNDVKTLPDWLTQIEKLIQQKFSLFNQTNAWRAIFAAQND 794 Query: 612 IEQQWQAIIAEGLGAQ-------------------YGDAVPLSLLRDELAQRLDQERISQ 652 +++ +A + + L+ + + +AQ + +++S Sbjct: 795 LKENIEANSKYLATVKIKTAKNPNPATEPVQQIDTENLPLKLTFVLENIAQSIINQQVSA 854 Query: 653 RFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM-SQKPKRGDRSRRDD 711 +G + + +RS+P+K+V +L +N +P+Q ++LM + P RGDR R DD Sbjct: 855 EP-SGVITFARIGSVRSLPYKLVVMLNLNLSEFPKQEQQNRYNLMQAGLPIRGDRFREDD 913 Query: 712 DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP--------- 762 D FL+AL+ A+Q +I Y G+S D E P+ VQEL+D++ Sbjct: 914 DLGAFLDALLCAKQACWIFYNGKSTTDTHEHLPASPVQELLDFLQNRMASDDVIIDPNND 973 Query: 763 ---------GDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQA 813 E VKA+L H +PFD ++ + + + Sbjct: 974 QNSLSNNSQNPPNPQSTNFEQWVKAYLVTHHAALPFDKSYFELPQTEHKDKGIQSPEQIN 1033 Query: 814 GKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILE 873 S +Q +L + + L P + + + + + S P + + + Sbjct: 1034 DDRVSADLQQTTASLNQQIKLSK--TALYPPAKIWHNLYTALQDKEATSTQPIVQVWDTK 1091 Query: 874 GLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIA 933 L+ + Q L + + + + G + + +A + Sbjct: 1092 QLTEWLSQWQQLKQRLSDMPEQSQQHYVNLSKIV--GNLADPAKAFVKAQNIAIAAQGDN 1149 Query: 934 CRQPGQSMEIDLACNGVQ---ITGWL 956 + D + + GWL Sbjct: 1150 DSGGNDRNDNDNEFESLTLDALDGWL 1175 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 92/457 (20%), Positives = 164/457 (35%), Gaps = 128/457 (28%) Query: 1 MLRVYHSNRLDVLEALMEFIVERER-LDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59 ML + SN++D L + + FEP ++V S M +WL+ ++ K GI+ Sbjct: 1 MLTIIQSNKVDKLFDHLLNAYKNPSYQGSIFEPFQVIVPSKVMGEWLKKQVADKAGISTL 60 Query: 60 IDFPLPASFIWDMFVRVLP------------EIPKESAFNKQSMSWKLMTLL-------- 99 + + + RVL ++P+ + +K M W++ L Sbjct: 61 VTTEFWGRYFLGLMQRVLRTYARISEDDDILDVPEVAMLSKNVMQWQIFGYLTQYRQAIV 120 Query: 100 --------------------------------PQLLEREDFTLLRHYLTDD--------- 118 P +++ + + L++D Sbjct: 121 EQPQHPLYPFLSPLVEDKEADSPNTTGFAPDTPAIVDSLSWANNQSLLSNDVISQSADLQ 180 Query: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL------------------------ 154 + ++++QL+S A++ ++Y+ YRP WL+ W Sbjct: 181 TQDQRIWQLASDMANMLNRYMTYRPQWLSNWGQDKPVAVSDMIAKKDALHNRLNGRDASN 240 Query: 155 --------VEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESAT----- 201 VE + +A Q LW+ L + R L+ +F + L + Sbjct: 241 AIDTPDWLVEHYEQLEAAQRFLWRQLFDD------DYRFREQLHNQFWQALNHSDTRIRN 294 Query: 202 TCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLL 261 LP VF+ + LPP L LQ LG ++ +L NP +W DI D +L ++ Sbjct: 295 ISRSKLPKHVFLFTLQQLPPTELLDLQRLGVLTDVTILHFNPSEQFWADIVDKNWLMQMQ 354 Query: 262 TRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQ 321 E+ ++ +D G+ LL+ +GK R+ +L+ L ++ Sbjct: 355 M------------------EDDASKHDAWYLKDYGHTLLSRFGKQSREVFAMLASLSGNE 396 Query: 322 ELDA-----FVDVTPDNLLHNIQSDILELENRAVAGV 353 F + P+ LL IQ DIL LE A Sbjct: 397 YEHVLWQDDFDNTPPNTLLEFIQHDILMLEEVATTAK 433 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 17/168 (10%) Query: 964 LLRWRPSLLSVAQGMQLWLEHLVYC---------ASGGNGESRLFLRKDGEWRFPPLAAE 1014 L + P+ +Q WL HL + A +G S P + E Sbjct: 1356 WLNYLPTSGKEKYLLQFWLHHLCWQVLRRTTAQQAQLNDGFSLWQFSNKKTVYLPAIPCE 1415 Query: 1015 QALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQA 1074 QA YL ++ Y+ S ++ P A+ + Q ++ + +L+ Sbjct: 1416 QACGYLQDIVMVYQLIDSVVTILPP----AFCLSFLQKQ---QKQPEAPASQHLGDWLKD 1468 Query: 1075 YEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRF-LLPLFRFNQ 1121 N + + D +Q L P + + P+ + Sbjct: 1469 SNFNFVDVNQFDYPIWQHLIGDYKPSVVIGFAQTLGALIYEPMLSMVK 1516 >UniRef50_A5ZAT7 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAT7_9FIRM Length = 1144 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 104/810 (12%), Positives = 243/810 (30%), Gaps = 128/810 (15%) Query: 212 FICGISALPPVYLQALQALGKHIE-IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFE 270 +I G + P+ Q L+ L KH + + T P + Sbjct: 200 YIDGFTGFTPIQYQVLELLIKHCAGVKIAITLPEDEF----------------------- 236 Query: 271 DRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVT 330 + N+ + ++ N L +D ++ L D+ + + + Sbjct: 237 ------QSLRNAYSKGNNAISKYELFN--------LSKDTLWKLKDIINRNNI----EQQ 278 Query: 331 PDNLLHNIQS--DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEV 388 ++ Q+ I + + N+ + S + + H +P+ E Sbjct: 279 ETVIVGEGQAPYRIRDNKELTFLEKNLFRNNSSKYRENCKA----LEVHSMSNPREEAAY 334 Query: 389 LHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSH 448 + R+ ++ D DI V+ D+D Y +I+ F +P I + S+ Sbjct: 335 VAGRISELIV-DKGYRYNDIAVITGDMDGYYRYIEEEFSKN----NIPAFIDHKHNIASN 389 Query: 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508 P ++ + + + + F E V L+ + L I E + + +V +SG R G Sbjct: 390 PFVDGIKAAIEIVEKDFSYETVFHLIRLGFLP----IDREAVDIMENYVLQSG-RRGFKS 444 Query: 509 DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLL 568 W G E Q+ E + E + + + Sbjct: 445 YGRL-----------WEKAYK----GMTAEELDMVNQAREKLVEIIRPLREELKKKKATV 489 Query: 569 MQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQY 628 + Q ++ + R + + + ++ + Sbjct: 490 REYTKAVYQFVQANNMQRQIDDYR--IEFQNQGEISRAKEYEQVYVTIITLLDRIVELMG 547 Query: 629 GDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIP-FKVVCLLGMNDGVYP 686 + + + + L + ++ V + + R +++ +G+NDG+ P Sbjct: 548 DEVLTIKEYKQILQAGFESVKVGIIPPGLDTVMVGDIERTRLKDTKRIIFFMGVNDGIIP 607 Query: 687 RQLAPLGFDLMSQKP---------KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQ 737 + G + + ++ +K+ I++ +S Sbjct: 608 KAGQAGGIITDTDREFLEKNNYILAPTATDNVFKQKFYLYTIFAKPTEKMCITFS-KSGS 666 Query: 738 DNSERFPSVLVQELIDYIGQSHYLPGDEA---LNCDESEARVKAHL---TCLHTRMPFDP 791 D + R S ++ L++ + DE+ LN + ++ +L +++ Sbjct: 667 DGATRRKSYIISTLMNLFENLKIIDEDESEITLNQVTTRSKALDYLSQNIYEYSKEGDSG 726 Query: 792 QNYQPGERQSYAREWLPA-ASQAGKAHSEFVQPLPFTL--------PETVPLETLQRFWA 842 + +E+ A P+ E + + L+RF A Sbjct: 727 IFKELMATVMKNKEYSKVINLMFDGAFYSAKNPILDENVARQLYGNKENIGITRLERFAA 786 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQL------------LNA--- 887 F L++ R + F + L I + L+ Sbjct: 787 CAYSQFLNNGLKLGERKKFELAA----FDIGNLYHSAIKEFFDTINTNNIKWADLDDKKS 842 Query: 888 -LVEQDDAERLFRRFR--AAGDLPYGAF-GEIFWETQCQEMQQLADRVIACRQPGQSMEI 943 + D E++ ++ A D+ AF + +T + + L + + + E+ Sbjct: 843 ENIINDSIEKVMEQYENDALNDIARSAFIKKQVKDTSTETVNALVKHIRSGNFLPREYEL 902 Query: 944 DLACNGVQITGWLPQVQPDGLLRWRPSLLS 973 +A V + + + + Sbjct: 903 RIAHGRV---DRVDTFEDGNNIYVKVIDYK 929 >UniRef50_C0WLM6 ATP-dependent deoxyribonuclease, subunit B n=3 Tax=Lactobacillus RepID=C0WLM6_LACBU Length = 1181 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 87/609 (14%), Positives = 180/609 (29%), Gaps = 79/609 (12%) Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 I +D+L+LE + + + SI + + E++ + R+ M Sbjct: 283 RISADLLKLEKFWIQSSGLGAIDDNPITVS-----KSIQVYQADNQYSELDQMATRIRQM 337 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFIS 456 + D +++ +DSY + +F + +PY +++ HP++E + Sbjct: 338 VSTGK-YRYSDFLILTRHLDSYETILDPIF----TMQQIPYFRDIQKSMVDHPLVELLEA 392 Query: 457 LLSLPD----SRFVSEDVLALLDVPVLAAR------FDITE--EGLRYLRQWVNESGI-- 502 L + D + +DV+ L ++ + I + + + V ++G Sbjct: 393 LFDMYDPDRPRNYRYDDVMRFLKSELVLPQATDGTAMKIDDYRQAVSLTENLVLKNGFEG 452 Query: 503 -RWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELV 561 +W DDD R+ + + ++ LP + A+ Sbjct: 453 KKWTQDDDWQYVWVADDDDGTVLTEKDKRIT--QQINVIRHLIKNALPNFYNRFYKAKTN 510 Query: 562 GHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIA 621 A + L + L++W D D + + + + +++ Sbjct: 511 ADAAGI---LYRFLVENGVVNRLQDWRNAAVD------RQDINRSDEIEQVWRTFCSLLD 561 Query: 622 EGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGM 680 E + + + SQ V I ++ KV ++G Sbjct: 562 ENVRILGDKPFVAQDFWALIYAGFEGATYSQIPSTLDQVQISESGMVQMNNRKVTMMIGS 621 Query: 681 NDGVYPRQLAPLGF----------DLMSQKPKRGDRSRRD--DDRYLFLEALISAQQKLY 728 ND P ++ D +S D + + YL A S +L Sbjct: 622 NDETMPERIVNKSLFGDDDVLQIQDNLSDSQYLNDPADEQMAAEPYLNYLAFTSPSSRLI 681 Query: 729 ISYIGRSIQDNSERFPSVLVQELIDYIG-QSHYLPGDEALNCDESEARVKAHLTCLHTRM 787 SY + D S S V + + + + T H Sbjct: 682 FSYTNH-VNDESGINLSPYVSRIAAHFNLKVVNYAAVPDNQRAVNVYIGSKRATLHHLIQ 740 Query: 788 PFDPQNYQPGERQSYAREWLPAASQAGKAHS------------EFVQPLPFTLPE----- 830 G+ Q A PL + E Sbjct: 741 VIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTNQLLGSIDYKNVPVPLSREIAEKLYGS 800 Query: 831 --TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 + + L+ F+ +P F + L++ R E F L S Q + L+ + Sbjct: 801 ALNISISQLESFYENPYEYFLKYGLRLQER---------EQFELSPASTGQFFHEALDRI 851 Query: 889 VEQDDAERL 897 + +++ Sbjct: 852 ISMVHEQKI 860 >UniRef50_Q4L4Y2 ATP-dependent helicase/deoxyribonuclease subunit B n=65 Tax=Staphylococcus RepID=ADDB_STAHJ Length = 1162 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 86/618 (13%), Positives = 200/618 (32%), Gaps = 77/618 (12%) Query: 313 LLSDLESSQELDAFVDVTP---------DNLLHNIQSDILELENRAVAGVNIEEFSRSDN 363 LL+ + F + +L +Q + + R ++ + + + Sbjct: 229 LLTTDGNEDPFSLFRKPSEVLTHLKEIAKDLNIELQQQFFKQQYR-FNNKDLIQLEQQFD 287 Query: 364 KRPLDP--LDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPF 421 ++P D SI S + EV + +++ D +DI ++ D ++Y+ Sbjct: 288 ALQINPIAYDGSINILESSSIREEVNEVARQIIKD-TRDKQYRYQDIAILYRD-EAYAYL 345 Query: 422 IQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAA 481 +V +P+ I +R+ HP++E SLL + + + ++ L+ +L Sbjct: 346 FDSVLPQYD----IPFNIDTKRSMTHHPIMEMVRSLLEVIQTNWNISPMMRLIKTNILTN 401 Query: 482 RFDITEEGLRYLRQWVNESGI---RWGIDDD--NVRELELPATGQHTWRFGLTRMLLGYA 536 F + + L +V E G+ RW +D+ ++ +H R Sbjct: 402 HFKDSAYLIDLLENFVVERGVYGKRW-LDEKLFSIDNFTKMGRKEHKLTTE-EREDFEQV 459 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 + +L ++++ + G + + + + L Sbjct: 460 VHLKNDIIDKILTFEKAMNEAENVRGFATAFYETMEAF----DLPKYLMTHRDQLD---- 511 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA 656 E + I I+ + + + + L + L+Q Sbjct: 512 --VDGRHEEAEEIDQIWNGLIQILDDLVTVFDNEEMTLKRFLEVFDIGLEQLEFVMIPQT 569 Query: 657 -GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD----- 710 V+I T+ + K + ++GMNDG P+ ++ L++ + K+ + Sbjct: 570 LDQVSIGTMDLAKVDNKKHIYMVGMNDGAMPQPVSSSS--LITDEEKKVFEQQAQVELSP 627 Query: 711 -------DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG-----QS 758 D+ ++ A+ +++ SY Q ++ S + ++ Sbjct: 628 TSDILQMDEAFVCYIAMTRGSEQVTFSYSLMGAQ-GEDKEKSPFIDQIQGLFNGLEVMNI 686 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAR------------EW 806 HY + L+ E + K + + + + E+ Sbjct: 687 HYQHNAQPLSLMEHPHQTK--VVLFESLKAWLEAEMVADVWVDAYQVMRDNDKLNNGLEY 744 Query: 807 LPAASQAGKAHSEFVQPLPFTL---PETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 L A + +PL +L + + + P + + L++N RT+ Sbjct: 745 LLTALTYDNETVKLDEPLAASLYGSTINASVSRFEGYNDCPFKHYANHGLRLNERTKYKL 804 Query: 864 IPDTEPFILEGLSRYQIN 881 E F L + + Sbjct: 805 ----ENFDLGNIFHTALK 818 >UniRef50_C4FTG6 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTG6_9FIRM Length = 1178 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 152/1040 (14%), Positives = 294/1040 (28%), Gaps = 189/1040 (18%) Query: 12 VLEALMEFIVERERLDDPFEPEMILVQST---GMAQWLQMTLSQKFGI--AANIDFP--L 64 VL + I +E F LV M +L + K+G AA +D Sbjct: 16 VLLDHLLDIQAKEPEAQFF----YLVPEHLKFDMESYLLAAVQDKYGSNEAALVDIQVVS 71 Query: 65 PASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKL 124 W + L E S+ + + + LL + ++ L + K Sbjct: 72 FKRLAWFLMPNSLAEEKPISSIGQIML---IKRLLARYQDQ---------LQVFRGQVKH 119 Query: 125 FQLSSKAADLFDQ-YLVY-RPDWLAQW--ETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + K A LFD+ YL +P+ L+Q + L E A L++ ++ Sbjct: 120 QGFAEKLAQLFDELYLGQIQPENLSQVPDLNQQEAKRLAEL----ALLYQGFIQEIEGQV 175 Query: 181 QPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLF 240 +H +++ P P+ + + LQ L L + Sbjct: 176 LGHYHDLQRLDSYLKA------HPLNRPTYLVVDHHYFFNGQQLQLLTTLIQQ------- 222 Query: 241 TNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL 300 C+ W S+ A + D +V Sbjct: 223 ---CQAVW--------------------------ITLPLSQQAARSKAYDPLIEVA---- 249 Query: 301 ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSR 360 R + L S L D T + + Q++IL L + + Sbjct: 250 -------RHTYGQMQLLAQSLHLPVAEDWTINQVQEGYQANILTLAQAFENHLRLAPQEL 302 Query: 361 SDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSP 420 S + + Q EV +++ ++ + RDI+V+ D+D Y P Sbjct: 303 SQPLNQVKTH----VIWEHDAIQTEVRHTSNKIHQLVSQ-EGYRYRDILVLTRDMDRYRP 357 Query: 421 FIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV-- 478 + A+F +PY HP++ S L L R+ D+ +L + Sbjct: 358 LVTALFEQND----IPYFYDHAVIMGQHPLVLWLESGLKLYRYRYQLADIFGILKSGLWL 413 Query: 479 ---LAARFDITEEG-----------LRYLRQWVNESG----------IRWGIDDDNVREL 514 L A + + L V +G W D + + Sbjct: 414 PADLRAAMAENPQDGPVLEEEFKAQVDLLENVVLANGYVGYRFAQLSFEWRFDQADRPYV 473 Query: 515 ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW 574 +G L + + +Q + SG A L W Sbjct: 474 NAAGQVTGQ-TYGQVVQALRESFLADFAPYQDLAQLTSFSGQKAAEW---------LYQW 523 Query: 575 RRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634 + + L + D + Q A + E + Sbjct: 524 LEEVGVKDRLIARRDQAIE------KGDLALSRQYEQVWQTLTASLDEFYQLYGEAELTF 577 Query: 635 SLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLG 693 S ++ L L++ A V + ++ + +KV +LG ++ P+ Sbjct: 578 SEFQELLLTGLNEATFHIIPPALDQVMVTSMESPQVQAYKVCFVLGADELTLPKHHQEDS 637 Query: 694 FDLMSQKPKRGD--------RSRRDDDRYLFL----EALISAQQKLYISYIGRSIQDNSE 741 ++ + G+ R + L L + L+SA +LY+SY+ Q + Sbjct: 638 LLSVANRQSLGESLLPYQQLRQSSQHNYSLELLMTQQVLLSASDRLYLSYVAMKGQQTVK 697 Query: 742 RFPSVLVQELIDYIG---QSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE 798 S +Q+L +++ S + + + + Q + Sbjct: 698 L--SPYLQQLAKQFHLPIKTYTHTLIHQNQVKLSRLEFGRYPVQMSSLLQLVHHYSQQKD 755 Query: 799 RQSYAREWLPAASQAGKAHSEFVQP-------LPFTLPETV-----------PLETLQRF 840 R S A + H+ + LP L + L+++ Sbjct: 756 RPSAAFLDFLTLMASQNPHTWVLLAQLFQFNQLPQNLTPETALALFGQKMTASVSKLEQY 815 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIPD-TEPFILEGLSRYQINQQLLNALVEQ-DDAERLF 898 + P F L++ R + + + L ++ Q+ + L Sbjct: 816 YQDPYSHFLLYGLKIRPRQQLELNAAGAGDYYHDFLDKFTQAQEARPDFETNFASIQTLM 875 Query: 899 RRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEID-------------- 944 + Q ++Q + +A Q + Sbjct: 876 AEDLRFNIFGTNPRMHLIKRKLDQHLRQFLNVSLAQSQALTVQPVATELVFGSKQEAGLI 935 Query: 945 --LACNGVQITGWLPQVQPD 962 L + + G + ++ D Sbjct: 936 LPLDKGSLTLRGKIDRIDAD 955 >UniRef50_Q836J9 ATP-dependent helicase/deoxyribonuclease subunit B n=37 Tax=Enterococcus RepID=ADDB_ENTFA Length = 1196 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 89/626 (14%), Positives = 197/626 (31%), Gaps = 85/626 (13%) Query: 310 YIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDP 369 + L L +++ D + ++L + N + G+N ++ PL Sbjct: 262 TYHQLYQLARQKQIPILSDYVE-------KKEVL-ITNPDLQGLNDYWIQSQEHLPPLST 313 Query: 370 LD---SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF 426 D + + + E+ + + ++ E ++I V+ D+D Y ++ +F Sbjct: 314 ADWRGDGLFLWRAENVKEELTHVATEIRRLVVE-EGYRYKEIQVLTRDLDCYENLLEPIF 372 Query: 427 GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486 + +P + A HP++E SL ++ + DVL L + + Sbjct: 373 A----EHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 487 EEGLRYLRQWVNESG-IRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQ 545 L W+N+ R +D + + W + Y E+ + + Sbjct: 429 TSE-ESLTDWLNQRNAWRRKVDITE-NVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQ--E 484 Query: 546 SVLPYDESSGLIAELVGHL--------------ASLLMQLNIWRRGLAQERPLEEWLPVC 591 V +E S I + + L + L+ W Sbjct: 485 DVATMEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWR--- 541 Query: 592 RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 L A ET +++ E + + + ++ L+ S Sbjct: 542 ---LQAIEAGQLETARNHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYS 598 Query: 652 QRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR---- 706 + A V + + R KV +GM + ++P+++ ++ D Sbjct: 599 KVPTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTEN 658 Query: 707 --------SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQS 758 + + Y+ SA+++LY++Y E PS + + + Sbjct: 659 QYLRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTA-QEVKPSPYFKNIQKDLNLP 717 Query: 759 HYLPGDEALNCDESEARV----------------KAHLTCLHTRMPFDPQNYQPGERQSY 802 + + + DE+ + + +PF + E+ Sbjct: 718 VFEKNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPF----WLNMEKALM 773 Query: 803 AREWLPAASQAGKA--HSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRL 853 + P A Q ++ H + + L E + + ++ F+ + F + L Sbjct: 774 NQSIAPLAKQVFESLTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGL 833 Query: 854 QVNFRTEDSEIP-DTEPFILEGLSRY 878 ++ R P T F E L ++ Sbjct: 834 RLKERDVFGLSPAATGEFFHEALDQF 859 >UniRef50_A7VXI0 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXI0_9CLOT Length = 1125 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 100/695 (14%), Positives = 203/695 (29%), Gaps = 104/695 (14%) Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 + +E+ + + I + E + + R+ L ++ Sbjct: 273 RFQNEELKLLEQVIYRQERLESGEVPGHIVLYNASDIYEEADFVARRI-QKLVQEEGYRY 331 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 R+I V+ + +SY + V +A +PY + + P++ +S L S + Sbjct: 332 REITVIARETESY----RGVLDAALESYGIPYFMDQPEPLEEKPLMTLVLSALECVQSGY 387 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVN---ESGIRWGIDDDNVRELELPATGQH 522 S+++ LL + ++ E + L + SG RW P + Sbjct: 388 RSDELFRLLKTGLT----ELQTEEIAALENYALLWNLSGRRWLEPFTMHPRGFSPEMTEE 443 Query: 523 TWR--FGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 + GL R+ + P + + G + + L Sbjct: 444 DQKKLEGLNRLRETV-----------MEPLAQFEESLRSGTGK--GIAYGVYQLLERLNA 490 Query: 581 ERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640 + + +M + + I+ + + + Sbjct: 491 AQNIRRMADELENM------GEWNLAQEQIRLWDMLMEILDQMALVLKEQHLSPRRWSEL 544 Query: 641 LAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 + E I+ V++ R + V L+G +G +PR G ++ Sbjct: 545 FQLVVQSEEIAFIPQGVDEVSVGGADRSRPAAPRAVFLIGAEEGEFPRTPVSAGVFSDAE 604 Query: 700 KPK-------RGDRSRRD--DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 + D + ++RYL A +S ++L++SY S R PS LV+E Sbjct: 605 RRLMISMGLPLYDSLEKLAVEERYLAYMAAVSPSERLFVSY-ASSDLSGGARSPSSLVRE 663 Query: 751 LIDYIGQSHYLP-GDEALNCDESEARVKAHLTCLHTRMPFDP-----QNYQPGERQSYAR 804 + + EA + L R P + + + G Y Sbjct: 664 VRKIFPECPVADRSQEAFSDLLWSPEPAFELAASLWREPSEREETLKRYF--GGLPEYQD 721 Query: 805 EWLPAASQAGKAHSEFVQPLPFTL----PETVPLETLQRFWAHPVRAFFQMRLQVNFRTE 860 A + F P V +++++ + F + L R Sbjct: 722 RLEAVGRAASEEPIAFQNPENAQKLFGSNLRVSASQIEKYYLCRFQYFCRYGLGAKERK- 780 Query: 861 DSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQ 920 P + + L + LL ++ E L + + Sbjct: 781 --------PAVFDALEYGSVMHYLLENMLRAFSGETLASMKK---------------QEL 817 Query: 921 CQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQL 980 E+++L D + + GW + R+R L +A Q+ Sbjct: 818 LAEIRRLLDSYV----------------ETNLGGW-----EEKSPRFRYLLARLADTAQM 856 Query: 981 WLEHL---VYCASGGNGESRLFLRKDGEWRFPPLA 1012 L HL + + + L + K E L Sbjct: 857 LLSHLGKELAQSDFVPADFELSIGKGKELEPLVLE 891 >UniRef50_C9LQY6 Putative ATP-dependent nuclease subunit B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQY6_9FIRM Length = 1028 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 106/691 (15%), Positives = 211/691 (30%), Gaps = 105/691 (15%) Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 L A K + I E + + R+L+++ D L Sbjct: 166 LRCLAADYFQNVPSPCPLPKETSPVPEKGIHIVSAPDSHAEADFISRRILSLV-RDKNLR 224 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP--- 461 RDI+V++ D+Y+ ++ F +P +++ +HP++ LL Sbjct: 225 WRDILVLLRSADTYTDPLERSFSRYG----IPVFTDEKQPMNNHPLVMLLDGLLHFIKAE 280 Query: 462 ----DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 + F E + +L + + + L +V + IR+ Sbjct: 281 SRGKNRGFTREHIFRILKTEIFP---SFPTDMIDKLENYVLKYHIRFS------------ 325 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS-LLMQLNIWRR 576 TW+ +A + Q P + +L LN + Sbjct: 326 -----TWQKP-------WAFRDYRSIDQEPAPLSDKEITKQNTANTWREKVLSLLNPFLA 373 Query: 577 GLAQERPLEEWLPVCRDMLNAFFLPDAETEAA-----------MTLIEQQWQAIIAEGLG 625 G + E+ L +P+ + + ++ +++ E + Sbjct: 374 GWKEALSAEDKCAFLYRWLTEQQIPETLSVWDELEFEKTKKRPHLQVWKKVLSLLDEIVH 433 Query: 626 AQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGV 684 D +P L L L S V + ++ + KVV + G +G Sbjct: 434 VTGKDILPEEELCGILTDGLSALTFSMIPPTLDHVTVTSMDRGYAAEAKVVFIPGALEGS 493 Query: 685 YPRQLAPLGFDLMSQKPKRGDRSRR----------DDDRYLFLEALISAQQKLYISYIGR 734 +P+++ GF ++K +R ++++ AL A LY+SY Sbjct: 494 FPKKIDDSGFFTETEKQVLLKSARINLGNNLMELVQEEQFYTYLALTRASDALYLSYPAA 553 Query: 735 SIQDNSERFPSVLVQELID---YIGQSHYLPGDEALNCDESEARVKAHLT----CLHTRM 787 + S PS L++ L Y LP + A L+ L Sbjct: 554 AADG-SAAEPSFLLERLKALGYYTENMEILPPSPYHDDPSFFANPNQALSLLPEILRNGR 612 Query: 788 PFDPQNYQPGERQSYAREW--LPAASQAGKAHSEFVQPLPFTLPETV---------PLET 836 P N+ + + E+ L + AG + LP L + + Sbjct: 613 PSPTGNWAALKDWAEGNEYRELMESKLAGLRYQNTAARLPKMLARKLFMKGGRFYGSVTK 672 Query: 837 LQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT-------------EPFILEGLSRYQINQQ 883 LQ + + P + F + + + R E + Q + Sbjct: 673 LQNYRSCPYQYFLRYGIGIEERNTGEADYLDYGNYLHAGIHQFGEILKSQNRQWRQATDE 732 Query: 884 LLNALVEQDDAERLFRRFRA---AGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQS 940 + + +D E++ R +A + D + +T + +Q+ Sbjct: 733 EIEK-ISEDITEKITPRIKADALSSDQSAKYTRRVLDQTFRRALQRFRQWSRQSGFDTLD 791 Query: 941 MEIDL-------ACNGVQITGWLPQVQPDGL 964 ME + + +TG + +V DG Sbjct: 792 MEKEFYLRISASPTDSFTLTGKIDRVDTDGR 822 >UniRef50_B7J2J0 Exodeoxyribonuclease V, gamma chain n=26 Tax=Borrelia RepID=B7J2J0_BORBZ Length = 1079 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 87/604 (14%), Positives = 205/604 (33%), Gaps = 71/604 (11%) Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMV--ADIDSYSPF 421 K P+ LD S + +REVE+L ++++ ++++ L DI + + Y P+ Sbjct: 282 KTPISTLDDSFKIIEAKNQKREVEILTNQIVHSMQKN-NLKLSDIAITCLQEKFNEYLPY 340 Query: 422 IQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS------RFVSEDVLALLD 475 I+ + + + A L+ L S F ++V LL Sbjct: 341 IEECLNKYEIEYSVLCY----NNLSRGESIIALKRLMDLFVSKNGTISNFSRKEVFDLLS 396 Query: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 + +F+I+ L YL ++ + I +G + + L ++W G R L+ Sbjct: 397 NNKVMKKFNISTSELNYLIEFSDTMNISFGANKTHKENLNYDQNFLNSWEDGFNRFLMSE 456 Query: 536 AMESA-QGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 + + E Q + I +L+ + SL +N ++ + + EW + Sbjct: 457 IFDEKYEEETQKESTRFQDQESIMKLITIVKSLYEDINYFKN---KAYKVYEWAEIIEIF 513 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAI------IAEGLGAQYGDA-----VPLSLLRDELAQ 643 + + + + ++ + ++ + + L Y + L + L + Sbjct: 514 IQKYIDLE-DFNTTDEYLQNKIKSFKNFPKDLNDNLYKNYLKEINEIKIEFYLFKIMLEE 572 Query: 644 RLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR 703 L++E+ + + I + + K + LG + ++ +L+++ + Sbjct: 573 SLEKEKYGVMYKKNGILIANYKEIEYLQKKEIHFLGF--QKFNSKINYDNMNLLNEYYEH 630 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 763 + ++ + + +K Y+ + E S + +++++I + Sbjct: 631 --ENTEKEEITALFNLIFATSEKFYLYCSFQDNLS-PEINTSKTINKILEHIQKYE---- 683 Query: 764 DEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ---SYAREWLPAAS--QAGKAHS 818 K H DP ++ + +Y E A Q K Sbjct: 684 -------------KNFQIEKHPNENHDPVYFKDAKENYLINYDPEAYNIAKILQNSKPIG 730 Query: 819 EFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQV-----NFRTEDSEIPDTEPFILE 873 + P + L L+ ++P + F++ L V E E + + F + Sbjct: 731 FKQNKIKLESPIKLNLYELKNALSNPYKHFYEKTLNVKIQDIRLENEIKEKQEEQIFSVI 790 Query: 874 GLSRYQINQ-QLLNALVEQDDAE---------RLFRRFRAAGDLPYGAFGEIFWETQCQE 923 + I LL+ + + R G +P+ + ++ Sbjct: 791 EIIYRLIKNSTLLHEYIMGKKDDARKAIEIIKNHIRYEIQQGSIPFNIDQKTTVNEILKK 850 Query: 924 MQQL 927 + +L Sbjct: 851 INKL 854 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 85/198 (42%), Gaps = 18/198 (9%) Query: 2 LRVYHSNRLDVLEALMEFIVERERLDDPFEPEM-ILVQSTGMAQWLQMTLSQKFGIAANI 60 + +Y +N+++ + ++ + + D+ F+ E I+V++ + + ++ T+++ GI+ N+ Sbjct: 1 MYIYKTNKVNKIYNKIKELTQ---KDNIFKKETLIIVKNDLLREEIKKTIAKLNGISYNL 57 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMT---LLPQLLEREDFTLLRHYLTD 117 + A+ ++ + + + S+ L T +L +L+ E Y+ D Sbjct: 58 NIKKNAA--KSIYEISFKNPNIKKYIEENTFSFYLETEKFILYNILKTEKL----KYIKD 111 Query: 118 DSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLV---EGLGEAQAWQAPLWKALVE 174 + + +SK DLF Y + WE + E L + Q L+K L E Sbjct: 112 FKSTKNRYFFASKIIDLFHHYYSKFSKLIETWEDNGFLFQEENLKPYENMQKELFKKLFE 171 Query: 175 YTHQLGQPRWHRANLYQR 192 Q H+ + ++ Sbjct: 172 --KQKNILNLHKKIIQEK 187 >UniRef50_C0CXR8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0CXR8_9CLOT Length = 1216 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 104/728 (14%), Positives = 215/728 (29%), Gaps = 120/728 (16%) Query: 342 ILELENRA-----VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 IL+ A +E+ N R + +P+ EV + R+ Sbjct: 280 ILDRRPAWRFAQSPALDFLEQNLYRYNGRAWKGEQDQVKLFCGQTPEEEVRYVKSRI-ES 338 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFIS 456 L + L RD+ V D+ +Y I F A +P+ + D+++ +P++E + Sbjct: 339 LVREQGLRYRDMAVATGDLAAYGREITRQFDQAG----IPFFMDDKKSILENPMVELIRA 394 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWG---IDDDNVRE 513 +L F E+V L ++ R + T + + + W N +G G ID + + Sbjct: 395 VLEAVR-DFSYENVFRYLKTGLVYDRAEGTADEAQPV--WENAAGADSGGEAIDWEEASD 451 Query: 514 LELPATGQHTWRFGLTR------------MLLGYAMESAQGEWQS-----VLPYDESSGL 556 EL G R L Y W+ + + L Sbjct: 452 GELADVLLGETGGGADRRYSREEAAVMTDRLENYVRALGINGWKRWDSQWEAQFKGAENL 511 Query: 557 IAELVGHLAS-LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF----------------- 598 + + +L L R ++++ + R+ L + Sbjct: 512 NLQELNAFRQWILAPLRPLREAMSKDATVASVTQALRNYLESMELREKLEEYQAYFAARG 571 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-G 657 D + + + + G + L + ++ Sbjct: 572 LRGDENLAREYGQVYDRVEELFERLTGLLGDEKAERKSYAQILDAGFGEIQVGVIPATID 631 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDD------ 711 V + + R +V+ +G+NDGV P++ G L+ + + ++ R + Sbjct: 632 QVMVGDITRTRLDGVQVLFFVGVNDGVVPQRK--NGGSLLGDRDREFFKAHRLELAPTAR 689 Query: 712 -----DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD-- 764 ++ L ++L I+Y GRS D PSVL+ E+ G Sbjct: 690 EDGCMQKFYLYLMLSKPSRRLVITYAGRSA-DGKSLRPSVLLGEVYKLFPGLTAEDGSTV 748 Query: 765 --EALNCDESEARVKAHLTCLHTRMPFDP-----QNYQPGERQSYAREWLPAASQAGKAH 817 + + + L D ++ Q + W + Sbjct: 749 KWPVQTPRDGKETLIQGLKTYRDLKEPDAADGALEDSQWERKFLELYRWFFGQEDYREEV 808 Query: 818 SEFVQPLPFTLPET----------------VPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 VQ ++ E + L+++ + F + L++ R E Sbjct: 809 KLLVQAAFYSYEERGIGRAAARALYGKILQGSVTRLEQYASCAYAHFLRYGLELMERREY 868 Query: 862 SEIP-DTEPFILEGLSR-YQINQQ-------LLNALVEQDDAERLFRRFRAAGDL----- 907 D + + R +Q+ + L + E + + G+ Sbjct: 869 ELEAVDMGNLFHQSIDRCFQVMKAQGRDWRNLTEEGRQGLVKESVSQVVADYGNTIMMST 928 Query: 908 -PYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL--------------ACNGVQI 952 Y + + LA++V E+ +Q+ Sbjct: 929 ARYAYLAGRVERMTDRTIWALAEQVKRGDFEPAGFEVSFSAVDNLKAMRIALSPDEELQL 988 Query: 953 TGWLPQVQ 960 G + ++ Sbjct: 989 RGRIDRMD 996 >UniRef50_A8STZ1 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8STZ1_9FIRM Length = 1258 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 109/847 (12%), Positives = 233/847 (27%), Gaps = 132/847 (15%) Query: 53 KFGIAANIDFPLPASFIWDMFVRV-LPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL 111 + G + NID + +F + + F K + +++ + ++D + Sbjct: 65 RHG-SMNIDAIGLNRLAYRVFDELSINPGQVLEDFGKSMLVKRIL-----MENQDDLLMY 118 Query: 112 RHYLT--DDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLW 169 +Y+ D+ K S ++LF QY V R + E + Sbjct: 119 GNYMDKMGFVDEMK-----SMMSELF-QYAVDREEIDMAMEQMDSESST----------Y 162 Query: 170 KALVEYTHQLGQPRWHRAN----LYQRFIETLESATTCPPGLPSRVFIC-GISALPPVYL 224 + L + + H AN + ++ + L + + G + PV + Sbjct: 163 RKLHDIRLIYEKFEEHNANDQYIVAEQLSQLLAANVEKSQFISKSHMYFDGFTGFTPVQM 222 Query: 225 QALQAL-GKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENA 283 + + L + F DI Sbjct: 223 KLVTQLMSHAASVTFAF---------DIDPDRIGLAKPKEYE------------------ 255 Query: 284 GQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDIL 343 +L ++ I + + +D DN++ Q +I Sbjct: 256 -------------------LFRLTKETIAAICKAAADVHVDIL-----DNVVMCGQGEIP 291 Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 E + ++ SI + E + ++ ++ + Sbjct: 292 YRFRDDPCLAAFERNIFRYPHQKINGAADSIKLVRTDRARDEALYVASQIRKLV-REKGY 350 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 +DI V+ D+ + + + A + +P I + A + P + + L++ Sbjct: 351 RYKDIAVVAGDLHDVAGYYR----QAMDEYRIPVFIDENTALRGDPCSDTVRAFLAVMSD 406 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHT 523 F V LL + + + + + + +R G + + Sbjct: 407 NFSFNSVFRLLKSGMTEVAY----MDVERMENYALKRNLR-GYKSWLKEITDKNNSDYAQ 461 Query: 524 WRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 + R ++ E ++ P + + + +L + L Sbjct: 462 EMDSIRRQIVSIFGEDCIDVYKPSSPNSKD---------TVTNYTKELYNFLDELHVCEK 512 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQ 643 LEE + F + A I + A+ + + + + + L Sbjct: 513 LEERRKRLYE--EKLF----DEGDAYGQIFDKIVALFDKVVTILGDEKMTVKEYAGVLEA 566 Query: 644 RLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP- 701 + I V + + R K + G+N+G+ P+ + Sbjct: 567 GISDMEIGIVPPTIDRVVVGDMTRSRLNHVKALFFTGVNEGIIPKPAKKGKILSNGDRQN 626 Query: 702 --------KRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELID 753 D++ +++ +L LYI + N PS LV + + Sbjct: 627 LEKCGVTLAPSDKTNAYIEQFYIYTSLTKPSDNLYIVFRKMGEDMN-AVGPSYLVDRIRN 685 Query: 754 YIGQSHYLPGDEALNCDESEARVKAHLTCLH-------TRMPFDPQNYQPGERQSYAREW 806 D E+ +L + T Q G YA W Sbjct: 686 IFPDIEIEDYDLDSQIPETVNGALRYLVSRYDEVGSDGTLQAVKRLIEQQGGNTEYAT-W 744 Query: 807 LPAASQ------AGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTE 860 L A K S L + T + L+++ + F Q L + R Sbjct: 745 LGAMQSGYDYVNETKTLSPETVRLLYGTELTESVSKLEKYAECQFKYFLQYGLGLMDRET 804 Query: 861 DSEIPDT 867 Sbjct: 805 YQLNAAN 811 >UniRef50_B1C9D7 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9D7_9FIRM Length = 1111 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 86/598 (14%), Positives = 196/598 (32%), Gaps = 103/598 (17%) Query: 309 DYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD 368 D +Y L L + + + ++ ++ + DI L + S + + D Sbjct: 247 DTLYKLKKLAENNDEEVVTEIDKED---EKEKDIKFL----------ADNIFSYDTKTFD 293 Query: 369 PLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGS 428 ++I + EVE+ +L ++ ++ +DI V+ +D D+Y I F Sbjct: 294 DEINNIEIFKASTIYEEVEMTALNILKLI-KEENADFKDIQVLPSDYDTYKEIISETF-- 350 Query: 429 APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEE 488 + + + + + +L + +L++ + F + D+++ L + D+++ Sbjct: 351 --KKHNISFFLDNTTSIMDTNILRGILKILNIVEGNFKTHDIISFLKTGLT----DLSKT 404 Query: 489 GLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVL 548 + + E GI+ + W R + E+ Sbjct: 405 DIETFENYALEFGIKGTM-----------------WTADFKR-------NNPDNEYD--- 437 Query: 549 PYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF---------- 598 +A L L++ L R L + ++E + D L F Sbjct: 438 --------LAYLNEKKDELMLPLITLRNDLKDKTSVKEITNIFYDFLEEFGLYEKIITLV 489 Query: 599 ----FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 + D E I + + + + LS L + +I Sbjct: 490 NKFKYKEDFENANKYAQIHNSIITALEQIYDFLGNEELSLSEYTKVLESGFNALKIGIIP 549 Query: 655 LA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK----------PKR 703 VNI +L RS K + +LG+NDGV P + G +++ + Sbjct: 550 STIDSVNIASLSRSRSSEIKYLFILGVNDGVLPSNFSNSGGIFSNKEKLKAINEGINLRT 609 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 763 ++ + D++RY ++ ++K+++SY + E PS ++ ++ D + + Sbjct: 610 TEQYKIDEERYFLTSVILKTEKKIFLSYPIT-GSNGDELLPSSIIFKIQDTMPKLKVKTL 668 Query: 764 DEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFV-- 821 D+ N +++ + + + + + + + K Sbjct: 669 DKN-NFEDNLSLISNYEATFKYLLNNKLHKNSSYKVNTLWDTLYDLYKEDDKGKYLIDIM 727 Query: 822 -QPLPFTLPETV----------------PLETLQRFWAHPVRAFFQMRLQVNFRTEDS 862 L F + + L+ + P F L+ R ++ Sbjct: 728 NSALSFNNKAVIKNKKLIDEIYKGEIVTSISRLETYAKCPFSYFVSYALKPKERKKNE 785 >UniRef50_UPI0001C37CA1 ATP-dependent nuclease subunit B n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37CA1 Length = 1112 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 104/697 (14%), Positives = 214/697 (30%), Gaps = 115/697 (16%) Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 I DI L + P +I EVE + + ++ Sbjct: 271 ISPDIAYL--------SSHVLRNKKYSPEEAPKPDNIKIFEARDMYSEVEYVSASIKRLI 322 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 L R+I V+ DI +Y+ I+A F +PY +S + V+ F SL Sbjct: 323 HSRKDLRYRNIAVISNDITAYAGIIKAAFKRYD----IPYFLSVEKPVTHTAVMVYFTSL 378 Query: 458 LSLPDSR-FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELEL 516 + L SR F SE + +L + D++ + L + +W +D + Sbjct: 379 IDLLCSRKFRSELIFRMLKSGLT----DVSLTDISALENYC----YKWTVDSE------- 423 Query: 517 PATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRR 576 W+S + + E + + + R+ Sbjct: 424 --------------------------IWESEFTAPDDALDSLEAIRKTV--IEPVFALRK 455 Query: 577 GLAQERPLEEWLPVCRD-------------MLNAFFLPDAE-TEAAMTLIEQQWQAIIAE 622 L+++ ++ + + M++ D A + + I+ Sbjct: 456 KLSKKCTAKKICTLIYEHLVSGGIEKNVGRMMSGLINSDRAYEAAEIKRLWGCLIDILDS 515 Query: 623 GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMN 681 + + S + + + S V + R K V ++G N Sbjct: 516 ICETLDENEMSFSEAAKLMKSMIGRINYSVPPQTLDAVMTASARTARLNAPKAVFIMGAN 575 Query: 682 DGVYPRQLAPLGFDLMSQKPKRGDRSRR---------DDDRYLFLEALISAQQKLYISYI 732 DG +P Q+ G + K ++ +R + +++ + +KL+ISY Sbjct: 576 DGDFPNQVTVHGLFSEPDRQKLAEKDLLVSTPLADLIAAERLVVYKSVSAPSEKLFISYP 635 Query: 733 GRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQ 792 S ++P+ ++ +I G ++ + A + H H + Sbjct: 636 L-SDLSGQTKYPAQIIDSIIKMFGTDRIRLTEDDIPVHYYAATL--HSAFYHYMQNRESN 692 Query: 793 NYQPGE-------RQSYAREW-----LPAASQAGKAHSEFVQPLPFTLPETVPLETLQRF 840 R Y R Q SE ++ L P + L+ + Sbjct: 693 TPSAAAVEQLLMSRPDYKRRLIYVLSRSGHEQEYLIESEIMENLKSFSPLRLSSTGLEEY 752 Query: 841 WAHPVRAFFQMRLQVNFRTEDSEIP------DTEPFILEGLSRYQINQQLLNALVEQDDA 894 + F L ++ R + E F GL + Q+ ++ E Sbjct: 753 DLCHFKFFCDKCLGLHPREKIELDARIAGELTHECFF--GLLSSRSKQEFISMSYEDMRE 810 Query: 895 ERLFRRFRAAGDLPYGAFGE-----IFWETQCQEMQQL----ADRVIACRQPGQSMEIDL 945 E + + G FG+ + + + ++ ++A E+DL Sbjct: 811 EIGRKAEEYRNNKLAGDFGKDAKFGLIFSKLTDRLSEVFIHTQQSLMASDFVPHKFELDL 870 Query: 946 -ACNGVQI-TGWLPQVQPDGLL-RWRPSLLSVAQGMQ 979 + V + G Q+ G++ R ++ ++ Sbjct: 871 RESHSVVLPFGNGKQLSFGGIVDRADICKINGRDYVR 907 >UniRef50_A8U8N1 Exonuclease RexB n=1 Tax=Carnobacterium sp. AT7 RepID=A8U8N1_9LACT Length = 1206 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 75/574 (13%), Positives = 167/574 (29%), Gaps = 71/574 (12%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 I + Q E+ + + ++ +DI+V+ ++D Y I+ +F Sbjct: 326 IEVWAAENKQAEITHVAKEIRKLVATGH-YRYKDILVLTRNMDDYLAIIEPLF----TSH 380 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF----DITEEG 489 + I HP++E +L+S+ + DV+ LL ++ F +++E Sbjct: 381 AIELFIDSAELMNQHPLIEVIDALVSIYKRNWRYADVMRLLRTELVIPAFEEQESLSKER 440 Query: 490 LRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP 549 + + Q V + D L + W Y E A+ + + Sbjct: 441 AQRVSQQVERAQKYREKVDITENVLLAYGYEGYHWTKTEPWHYTRYFYEDAEFQSDNDQR 500 Query: 550 YDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDA------ 603 ++++ I V L L + + L + + ++ + + D Sbjct: 501 IEQTANSIKTAVSGL------LVPFFKRLEKAKTSKDAAKELYLFMETVGVNDQIGFWRD 554 Query: 604 --------ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 E Q + ++ E + + L L D S Sbjct: 555 QAIEDNNLEEARKHEQTWQTFLQLLDEYVEVLGDEPFDLDSFHAILMTGFDNATYSMVPP 614 Query: 656 A-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK------------PK 702 + V + R K+ +LG+ D P + + K Sbjct: 615 SIDQVTFSGIEGTRIGTAKLTFMLGVTDAHLPAKTENKSILTEEDRDFFSYFLDETQYLK 674 Query: 703 RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 + + ++ +A + + +KL SY N + S V + Sbjct: 675 PTVEAVMASEPFIAYQAFLDSSEKLIFSYPTSDETKNGPKL-SPYVDRIAKAFQLPIQAK 733 Query: 763 GDEALNCDESEARV------KAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKA 816 + + ++ T M + Q G+ ++ + + + Sbjct: 734 LMDITSLEDPTGNELLDFVGTKKTTISQLLMVLRKEQDQKGQLNAFWQNLYMFFKRDKQV 793 Query: 817 HSEFVQPL-------------------PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNF 857 +F L + + + L+ F+A F L++ Sbjct: 794 ARDFNHLLVSLVKKNVPMPLRNTIATDLYGKDLYLSVSRLEAFYADHYGHFLTYGLKLKE 853 Query: 858 RTEDSEIPD-TEPFILEGLSRYQINQQLLNALVE 890 R P T F + L + + ++ + Sbjct: 854 RDVFELSPAGTGEFFHDALDH--LFKTIIQKNLS 885 >UniRef50_A6NVW2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVW2_9BACE Length = 1118 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 99/777 (12%), Positives = 213/777 (27%), Gaps = 117/777 (15%) Query: 307 GRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRP 366 R L L + A ++ + E + P Sbjct: 241 ARHTARSLLRLARENGVPARTEIQEN----------RAKEGPEELAFLEAHLFDAPE-TP 289 Query: 367 LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF 426 + I+ SP EVE +L ++ ++ RDI V ++ Y I+ +F Sbjct: 290 WAEKPAHISLFKAGSPYAEVEYTAGEILRLV-QEEGYRFRDIAVTARSMEGYGELIETIF 348 Query: 427 GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486 +P ++ P+L S L+ + +D+ L + ++ Sbjct: 349 ARYG----VPVFLAKMSDILQKPILALITSALAAVAGDYQYDDLFRYLKTGLT----GVS 400 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS 546 EE L + + +R G + + GY + + Sbjct: 401 EEDRDLLENYALKWDLR-GSRWTQKGDWTMHPK--------------GYGLPVRPEDEAL 445 Query: 547 VLPYDESSGLIAELVGHLAS--------LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 + + + + L L + + LEE ++ Sbjct: 446 LARLNAVRRQVIAPLEELRKNPDHTGLGHTKALYAFLERIGLPERLEERTAALQE----- 500 Query: 599 FLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-G 657 + + + + + + + L Q + ++ Sbjct: 501 -RGEPALAQEYSQLWDILCNALEQCAQIVGDTPMEADEFARLFSLVLSQYDVGAIPVSLD 559 Query: 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF------DLMSQKPKRGDRSRRDD 711 V + + K V LLG +DG P+ G L++ + + Sbjct: 560 RVTAGEMPRLAHKHCKAVFLLGADDGAIPQAAPSPGLLNDDDRSLLASYGLELAPTLTEK 619 Query: 712 ---DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN 768 + + E A ++L +S+ E+ P+ L+ L + E Sbjct: 620 LNRELTIVYETCALAGERLSVSWAAM-GSGGEEQRPAFLIPRLRGLFPALRPVTEAELEG 678 Query: 769 CDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTL 828 L+ + + + + E+ P + +A L Sbjct: 679 AF--------RLSAPRPALELAGRYPEAAQALRAMPEYAPLVERMEQAAGLTRGKLSRAA 730 Query: 829 PETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI-PDTEPFILEGLSR--- 877 + + + ++ + F Q L+ R + P+ F+ L Sbjct: 731 VDALYGSRVPMSASRMDKYKSCHFSYFMQYGLKAEPRKKAGFQAPEYGTFVHYVLEHVFQ 790 Query: 878 --------YQINQQLLNALVEQDDAERLFRRF-RAAGDLP-YGAFGEIFWETQCQEMQQL 927 ++ L+AL ++ + A + P + + + ++ + Sbjct: 791 SEEWRDENGGVDGDKLDALTDEIVERYIKEELGGLAEETPRFRYLFQRLLKPVRAVVRNV 850 Query: 928 ADRVIACRQPGQSME-----------IDLACNGVQIT-----GWLPQVQPDGLLRWRPSL 971 A+ + A + E ++L +GV I+ + DG L R Sbjct: 851 AEELSASDFKPIAFELGFGSGKDLPPVELEVDGVTISISGFVDRVDGWVKDGRLNLRVVD 910 Query: 972 LSVA----QGMQLW----LEHLVYCASGGNGESRLFLRKD----GEWRFPPLAAEQA 1016 +W L+ L+Y + LF + G P A A Sbjct: 911 YKTGRKSFDLTDVWNGMGLQMLLYLFTLQKEGRDLFGGHEIDPAGVLYLPARDAVIA 967 >UniRef50_D0BK92 Exonuclease RexB n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BK92_9LACT Length = 1189 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 92/654 (14%), Positives = 205/654 (31%), Gaps = 92/654 (14%) Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREV-EVLHDRLLAMLE 398 D LELE + E S + R ++ + + ++E+ E L + L Sbjct: 288 PDFLELEQYWLETSGGLETSSNRTSRKIED----LQWTTYEDERQEIQETLAT--IKTLV 341 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458 + +DI ++ +++ +Q + + +PY + + HP+++ ++ Sbjct: 342 DSGKYRYQDIQILSRNLEEQQTLLQPLLETY----QIPYFMDLSDTMEHHPLIQVLDAIF 397 Query: 459 SLPDSRFVSEDVLALLDV-----PVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN--- 510 ++ + +++ LL P+ A + + LR + R +D+ Sbjct: 398 AIQKHFWRYHNIMNLLRSEYCFWPLNRANLENKHDEEVTLRDALIHY--RQKLDETETII 455 Query: 511 --VRELELPATGQHTWRFGLTRM----------LLGYAMESAQGEWQSVLPYDESSGLIA 558 + TW + + + L+ + AQ + ++ E Sbjct: 456 LAQGYEGKDWISRKTWNYQVENIDEDSLSSREVLVHQQLTQAQELREQIVSLLEPFYKKL 515 Query: 559 ELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQA 618 + V + L + W ++ D +T + ++ Sbjct: 516 DKVETTKEAITLLYQLLEKIGVTEAFLYWRNHAANI------GDIQTARRQDQVWNEFLK 569 Query: 619 IIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCL 677 ++ E + + + + L + + + + +R P KV Sbjct: 570 LLEEYVYIFGDEPFDWEIFQLLLHTGFEHTHYNMAPSTLDQLTCTGIDSVRYSPKKVTFA 629 Query: 678 LGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDR--------------YLFLEALISA 723 +G++ GV PR G LM+ + + S+ D R +LF + L SA Sbjct: 630 IGLSQGVLPRMEEESG--LMTDEEREYLLSKLDSGRFLHPTTIQKQSVEPFLFYKVLTSA 687 Query: 724 QQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCL 783 +KLY+S ++ S V+ +++ + + E V H Sbjct: 688 TEKLYLSMHHTD--KGAKLKSSSFVERILNQYEITTQDGNQKQQERFEQGEFVTIHELFT 745 Query: 784 HTRMPFDPQNYQPGERQSYAREWLPAASQAGKA-------------HSEFVQPLPFTLPE 830 + E LP + K H + LP L Sbjct: 746 TLLQKLRQYKFSKEEDIPSIWIALPHLLRQDKDFQQEYHTLVDSVFHLNIAKQLPKELAA 805 Query: 831 T-------VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPD------TEPFI--LEGL 875 + ++ F+ P F Q L V R E E F + + Sbjct: 806 ELYGNHLYLSTSQVETFYKDPFSHFLQYGLNVRERREFELTAAGSGEYFHETFDQFIRKV 865 Query: 876 SRYQINQQLLNALVEQDDAERLF------RRFRAAGDLPYGAFGEIFWETQCQE 923 +++ + ++A + + +F RF+ P + ++ + ++ Sbjct: 866 HELKLDIRAIDAATTEKVLKEIFDSMNDDARFQILNATPRMNWTKVLLQDTIRQ 919 >UniRef50_Q038V6 ATP-dependent helicase/deoxyribonuclease subunit B n=8 Tax=Lactobacillus RepID=ADDB_LACC3 Length = 1179 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 107/729 (14%), Positives = 208/729 (28%), Gaps = 98/729 (13%) Query: 307 GRDYIYLLSD---LESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDN 363 GR Y L ++ LD F P + + L + N++ + + Sbjct: 256 GRLYHRLYQKAKTMKVPIRLDRFAKPRP------LSEGMKHLADWWQTSTNLQPQAPAQT 309 Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 + + V P E+ + ++ + + RD +++ +D Y+ I Sbjct: 310 -----AQNKEVELAVATDPYHELRTVARQIYQAVRQ--GARYRDFLILARRLDPYAAVIP 362 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLA-AR 482 A+F + +P R + HP++ SL ++ D + +DV+ LL +L Sbjct: 363 AIFE----EFNIPQFTDLERPMKDHPLVVLIESLFAIQDHDYQYQDVMRLLHTELLLPEN 418 Query: 483 FDIT--EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESA 540 DI + L + +GI + L A Sbjct: 419 MDIAAFRDALDTTDNHLVRTGITGKKRWTQTDPWRYFQRNPNADDSQLD--------PEA 470 Query: 541 QGEWQSVLPYDESSGLIAELVGHL------ASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 Q + + +L+ L W + L W Sbjct: 471 DKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLYQWLQTTGVIDQLNVWRQTANA- 529 Query: 595 LNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRF 654 D A + ++ + R+ LA +Q Sbjct: 530 -----DGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFRELLAAGFASATYTQIP 584 Query: 655 LA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDR 713 V I +R K V ++G + P G +++ + ++ ++ DDR Sbjct: 585 STLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSG--VLNSEERQLLAAQLPDDR 642 Query: 714 YL--------------FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 +L ++A +KL +SY ++ Q+NSE S ++L + + Sbjct: 643 FLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQASPYFRQLAQALQLTP 702 Query: 760 YLPGDEALNCDESE----------ARVKAHLTCLHTRMPFDPQN---YQPGERQSYAR-- 804 L V+A H ++P ++ + A Sbjct: 703 ATWAPAGLGTSLKAVLGSQRAMLSDFVRAAGEAQHQKLPLSRSWQGVLASLKQTTLAPLA 762 Query: 805 EWLPAASQAGKAHSEFVQPLPFTL---PETVPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 + L + L L V + L+ ++ + F + L + R E Sbjct: 763 QKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEYFLKYGLLLQPRPEF 822 Query: 862 SEIP-DTEPFILEGLSRY--QINQ--QLLNALVEQDDAERLFRRFRAAGDLP-------- 908 P DT L +Y Q+ Q L + D A + A P Sbjct: 823 ELSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPLVAAITKRPGYEILGST 882 Query: 909 --YGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLR 966 Q + + + R + M +L + G + Sbjct: 883 HRMAYLTSRLSRLLIQVLTNMRQQ--QRRTGFRPMRTELQFGRI---GDTRGLPGLSWPL 937 Query: 967 WRPSLLSVA 975 ++V Sbjct: 938 PHGGRVNVR 946 >UniRef50_C4Z483 Putative uncharacterized protein n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z483_EUBE2 Length = 1109 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 71/531 (13%), Positives = 166/531 (31%), Gaps = 70/531 (13%) Query: 345 LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLT 404 +N + R+++ R D+ I + + E+ ++ + Sbjct: 296 FKNSEELDFLEQNLFRNNSGRFNQKTDN-IVIYEGAVAKEELTFAAGEIIRLTRLC-GYR 353 Query: 405 PRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSR 464 +I ++ AD+D Y + +PY + +R +P + A L + ++ Sbjct: 354 YNEIAIVTADMDGYGKLAANILKQND----IPYFLDYKRHVTDNPFIAAINGALGIIENN 409 Query: 465 FVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 + + +L L + E + L + GIR + T +T Sbjct: 410 YSYDSILGFLRTG----MSGMEREDIDLLDNYCVAVGIRGRGKWHEPWIRKFRGTVNNTD 465 Query: 525 RFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPL 584 L + + + VL +A++V L L++ Sbjct: 466 LEKLNSLR--TMITDMLDPLEEVL--KSKESNVADMVKALYEFLVR-------------- 507 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQR 644 E+ + ++ + D + ++ ++ + + V + LA Sbjct: 508 EDMEQKVSVLNDSEYTGD-----EYVQLYKKVIEVLDKMYALLGSEKVGIKEFNKILASG 562 Query: 645 LDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKR 703 + +I V I + R KV+ +G+NDG P++ S + Sbjct: 563 FQEIKIGLIPQTNDCVVIGDIERTRLDNIKVMFFVGINDGNVPKKADSRSVLSESDREYL 622 Query: 704 GD---------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY 754 D R + R+ + + +KLY+SY ++ + + PS +++ + Sbjct: 623 EDKGIVMSASVREKAFTQRFYLYLIMTKSAEKLYMSYAVKN-SEGAALMPSYIIRSMRKM 681 Query: 755 IGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAG 814 L + + +P ++ E + E + + G Sbjct: 682 FSHCLKLSYKDTAQQNSYVT------------IPQAANSFDNTEIAANVDEDIIDSLTGG 729 Query: 815 KAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 + + + + F P+R + + + + R E + P Sbjct: 730 RLVG--------------SVTSFENFAECPLRYYLRYGVDLKEREEFTFSP 766 >UniRef50_UPI0001699EF8 Exodeoxyribonuclease V, RecC subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699EF8 Length = 196 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 83/203 (40%), Positives = 120/203 (59%), Gaps = 7/203 (3%) Query: 1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANI 60 M+ YHSNR++ L + + L P E I+VQ+ GMA+WL L+ + G+AAN+ Sbjct: 1 MILSYHSNRMERLLDHLLEQL-STPLGSPLGRETIVVQNPGMARWLSQQLALRSGVAANL 59 Query: 61 DFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSD 120 +FPLPASF W+++ L E+P ES F+++S+ W +M LLP LLE+ F L+ YL DS Sbjct: 60 EFPLPASFTWNIYQAWLGEMPAESGFDRESLHWCIMGLLPGLLEQPAFAALQRYLEGDSG 119 Query: 121 KRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLG 180 + + +QLS + ADLFDQYLVYRP + WE + G + + W+A LW+A+V T Sbjct: 120 ELRRYQLSGRIADLFDQYLVYRPQMVLAWENSAIETGT-QDEPWKAALWRAIVAQTQ--- 175 Query: 181 QPRWHRANLYQRFIETLESATTC 203 HRA L+ RF + Sbjct: 176 --AEHRAALFDRFQRMVARGDAP 196 >UniRef50_C8NER5 Exonuclease RexB n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NER5_9LACT Length = 1190 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 213/664 (32%), Gaps = 97/664 (14%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 ITF + E + ++ M++ + +DI ++ +++ F++++ Sbjct: 323 ITFTKYTDEREEYQETFAQIKRMVQTG-NVRYKDIQILGRNLEENHLFLESLLKQYA--- 378 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT---EEGL 490 +P I + + HP+++ +L ++ + D+++LL + D ++ L Sbjct: 379 -IPGFIDLSDSMEHHPIIQVLDALFAIWQYDWRYADIMSLLRSEYVLWHKDDETSLKDQL 437 Query: 491 RYLRQWVNES----------GIRWGIDD-DNVRELELPATGQHTWRFGLTRMLLGYAMES 539 + RQ ++E+ G +W + E + + TR+LL Sbjct: 438 QAFRQQLDETETVILANGYEGYQWTNGKPWSYVEDSIDEDSKVEQTDKNTRVLL-----K 492 Query: 540 AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 599 A+ + + E + L L ++ W V + Sbjct: 493 AEQLRNELTSILLPAFKKIEQSTTTKEAVSVLYQLLLTLGVDQSFIYWRDVAAE------ 546 Query: 600 LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GP 658 D ET + ++ ++ E + + L +Q + Sbjct: 547 EGDVETARRQEQVWTEFIRLLDEYIYIFGEKSFDWETFMMLLHTGFEQTHYNLAPSTLDE 606 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL--- 715 + I + +R P K+ +G++ GV PR + G L++ + + D R+L Sbjct: 607 LTITGMDSVRYTPKKITFAVGLSQGVMPRNIDETG--LLTDDERELFSNHLDSGRFLAPT 664 Query: 716 -----------FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD 764 F + L+SA + LY+S +D E+ S +Q L+ + Sbjct: 665 TGQLQSVEPFVFYQLLMSATEHLYLSCAIS--KDGKEQLVSNFIQRLLKHYELEEIDGSF 722 Query: 765 EALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHS------ 818 N E V + + ++ E + + +P + S Sbjct: 723 NRQNRLEQGDFVVPYELFTTLLLKMRENKFKEKEEIDFLWKLIPHLLKVDATFSANYHAL 782 Query: 819 -------EFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 LP +L + + ++ ++ P F Q L++ R E Sbjct: 783 LASVFRLNVASKLPLSLAQELYGNQLNLSTSQIETYYKDPFSHFLQYGLRLKERQEFELS 842 Query: 865 PD------TEPFI--LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLP-------Y 909 P E F ++ L+ I+ + L + + +F R + Sbjct: 843 PANTGEYFHEFFDQFIKELNARGISLRDLTLEQKLAIEKDIFNRMKDNPKFAILASSRRL 902 Query: 910 GAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNG-------------VQITGWL 956 + +T Q L + +A E+ +G + + G + Sbjct: 903 NFVQGLLHQTLMQTTNALQKQALALETKPWMTEVVFGTSGNYPIHIPIGHNQSIHLRGKI 962 Query: 957 PQVQ 960 ++ Sbjct: 963 DRID 966 >UniRef50_A8RRN9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RRN9_9CLOT Length = 1196 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 138/1047 (13%), Positives = 287/1047 (27%), Gaps = 199/1047 (19%) Query: 14 EALMEFIVERERLDDPFEPEMILVQSTGMAQWLQ--MTLSQKFGIAANIDFPLPASFIWD 71 ++ V +E ++ P + +++V Q + + L + GI NID + Sbjct: 25 TRMLYDRVIKESMEHPEQKYLVVVPEQFTMQTQKEIIRLHPRHGI-MNIDILSFKRLAYR 83 Query: 72 MFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKA 131 +F + IP +SM + + L +R +L +L + QL S+ Sbjct: 84 VFEDLGVRIPVVLDDMGKSMVLRKVAGL----KRGKLSLYSGHLEQTGF---IGQLKSQI 136 Query: 132 ADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQ 191 ++L+ QY + PD L L + ++ EY + Sbjct: 137 SELY-QYGIT-PDMLRDVRGEADSPLLAQKLEDLEVIYSGFREYIESHYITA-------E 187 Query: 192 RFIETLESATTCPPGLPSRVFI-CGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGD 250 ++ L L + + G + PV + + L + Sbjct: 188 EILDILCRELPKWEPLKDSIILLDGYTGFTPVQYRL---------VELFLMHAREVVCTV 238 Query: 251 IKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDY 310 D A + + + R AS K Sbjct: 239 TIDSRENAYKESSIQHLFYMSRHTVCRV----------------------ASMAKQ---- 272 Query: 311 IYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPL 370 + +++ + + +E+ + R + Sbjct: 273 ----HGIPKKEDIICSRRPA-------------WRYDESPELDFLEQNLYRYSGRTWEGK 315 Query: 371 DSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAP 430 + I + +P E + R+ M+ ++ + RD V+ D+ SY + F A Sbjct: 316 EERIQVYKGRNPAGEAAYVCSRIEQMI-KEEGMRYRDAAVITGDLPSYGRELAHQFDEAG 374 Query: 431 ADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEE-- 488 +PY + D+++ +P++E + L + F E L ++ + TEE Sbjct: 375 ----IPYFLDDKKSILENPMVELIRAALEMVK-DFSYESAFRYLKTGLVYDKAGSTEERA 429 Query: 489 ------------------------------GLRYLRQWVNESGIR-WGIDDDNVRELELP 517 L +V GIR W D Sbjct: 430 AADTAADTSGDAGEADAGSGFNGSREHAEQMTDRLENYVRALGIRGWKRWDSCWERQYRG 489 Query: 518 ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577 + RM + + P E+ + AS+ L + Sbjct: 490 GEKLNLKELNQYRMW----------ILEPLRPLREAFKAEGATI---ASVTAALRQFLEH 536 Query: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637 + LEE+ L D + + + G + + Sbjct: 537 MELREKLEEYRDFF---LERKEPGDENLAREYGQVYDRVLELFERLEGLLGAEKADMKNY 593 Query: 638 RDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 L + ++ V + + R KV+ +G+N+G P++ G L Sbjct: 594 IQILDAGFQEIQVGVIPATVDQVMVGDITRSRLEAVKVLFFVGVNEGTVPQRK--NGGSL 651 Query: 697 MSQKPKRGDRSRRDD-----------DRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 +S + + R + ++ + ++L ++Y G + D + PS Sbjct: 652 LSDRDRAALRKMDIELAPTVKEDGCIQKFYLYLMMSKPSRQLVLTYAGLTP-DGKSQRPS 710 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHT-----------------RMP 788 L+ E+ L + + L Sbjct: 711 NLMGEVGKLFPGMKTLDEHSVEWPVRTGRDARELLIQGLRGMQEQGEDDREREDAAFMQL 770 Query: 789 FDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWAHPVR 846 F R R+ + AA + + + + L++F + Sbjct: 771 FQHFYTSQEHRDK-VRQLVDAAFYSYEERGIGRAAARALYGRELQGSVTRLEQFASCAYA 829 Query: 847 AFFQMRLQVNFRTEDSEIPDTEPFILEGL-------------SRYQINQQLLNALVEQDD 893 F + L++ R E E + L R Q ++L + Sbjct: 830 HFLRYGLELMERQEYEL----EAVDMGNLFHQSIDRCFASMKDRGQDWRELTEEGRKSLV 885 Query: 894 AERLFRRFRAAGDL------PYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL-- 945 E + + G+ + + LA++V E+ Sbjct: 886 KECVTQVTEEYGNTIMSSSARNAYLAGRVERITDRTIWALAEQVKKGDFEPVGFEVSFSA 945 Query: 946 ------------ACNGVQITGWLPQVQ 960 +Q+ G + ++ Sbjct: 946 IDNLKAMRIGLSEDEELQLRGRIDRMD 972 >UniRef50_UPI0001BC38B0 ATP-dependent nuclease subunit B n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC38B0 Length = 1097 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 119/968 (12%), Positives = 278/968 (28%), Gaps = 159/968 (16%) Query: 57 AANID----FPLPASFIWDMFVRVLPEIPKESAFNKQSMSW-----KLMTLLP-----QL 102 AN D F +P RV+ P FN +++ ++ L + Sbjct: 27 CANPDKKYVFIVPEQSSLQAQKRVVRMHPSHGVFNIDVLTFGRLCYRVFEELQIELKETI 86 Query: 103 LEREDFTLLRHYLTDDSDKRKLFQLSSK----------AADLFDQYLVYRPDWLAQWETG 152 + ++R L + ++ + + ++L QY + PD L + Sbjct: 87 DDTGKNLIVRKILNNIKSDFRIIKAGRRQGFVSEMKSMISEL-KQYGIT-PDMLKEIAVS 144 Query: 153 HLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVF 212 + L + + ++ Y + L RFI+ L Sbjct: 145 AGSDRLRDKLEDISLIYSEFENYIRDRFVTVEDKPELLYRFIDN-------SDLLKGSTV 197 Query: 213 IC-GISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFED 271 + G + PV + ++ + + + Sbjct: 198 VFDGFTGFTPVQYRLIEKIA--------------------------------LQAENIIV 225 Query: 272 RELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTP 331 N D + +D I L + + + Sbjct: 226 TVTISSPAINNINTDMGMDELFY-----------MSKDTIRKLGVIADNVRIPF------ 268 Query: 332 DNLLHNIQSDILELENRAVAGVN-IEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLH 390 L+ I+SD + R +N +EE N I + + E++ Sbjct: 269 --LMQRIESDHSKYRFRNSPALNFLEENIFRYNGSTFGGSTEDIHISEHLNGKEEIQYAA 326 Query: 391 DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV 450 +L + DI V++ D D+++ +F + +P+ + ++R+ +P+ Sbjct: 327 AAILKEVRTH-GYRFNDIGVILGDKDNFANETARIF----KESGIPFFMDNKRSLIGNPM 381 Query: 451 LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDN 510 +E +++L RF E V +L + + + ++ GI G D Sbjct: 382 VEYIRGIIALIKERFSYEAVFRVLKNGLC----GFERDKVNIFEDYILAFGIN-GFD--- 433 Query: 511 VRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQ 570 R E + GL ++ E ++ V + + Sbjct: 434 -RYCEKFVRAYKSKEMGLD--VINEVREDFCCLISEFYSDMTKGTKASDYVNAVYDFME- 489 Query: 571 LNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD 630 + L E + + D D + ++ + Sbjct: 490 ----------KENLYEEMKMLAD-----NTEDEDKAEEFRKSYGHVVTLLERIYDMLGDE 534 Query: 631 AVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL 689 + + + + ++ ++ + V + L R KV+ +LG N+G+ P+ Sbjct: 535 PMTVKEFAEIMDAGFEEIKVGIIPPSNDCVMVGDLERSRIDNIKVLFVLGANEGIIPKTG 594 Query: 690 APLGFDLMSQKPKRGD---------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS 740 G ++ D + + + + LY+SY GR D Sbjct: 595 DNHGILSEDERMTLSDMQIVLSPTPKEKVFMQNFYLYLNFTRPENTLYLSY-GRYNDDGK 653 Query: 741 ERFPSVLVQELIDYIGQSHYLPGDEALNCDE-------SEARVKAHLTCLHTRMPFDPQN 793 E PS ++ + D Y P + S+ Sbjct: 654 EIRPSRVIGIISDMYDIKPYHPDITDFLTNRQNSFHLVSDYAKIKDYDADKNLAAVISYF 713 Query: 794 YQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWAHPVRAFFQM 851 + ++ + + ++ + + + E + + ++ + F Sbjct: 714 VNDDVYGNIIKKIIDSFNENVMSDNLTKEAAKMLYSENLTASVSRIETYAGCAFSHFLTY 773 Query: 852 RLQVNFRTE---------DSEIPDTE----PFILEGLSRYQINQQ----LLNALVEQDDA 894 L + R E D E + GL+ ++ + +N ++ A Sbjct: 774 GLGIGERQEHKITNIDIGDIFHKTLEYMGCTLMENGLNFGSLSDEERKDFVNVAFDKITA 833 Query: 895 ERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDL--ACNGVQI 952 + + F+ + + + + + +++ A + E + NG+ + Sbjct: 834 DYKYSFFKESAAN--EFLKMRLSDIVNRTVWAMGEQINAGSFIPAAFEHNFIRNINGMTV 891 Query: 953 TGWLPQVQ 960 G + ++ Sbjct: 892 NGKIDRID 899 >UniRef50_C9A8J1 Exonuclease RexB n=4 Tax=Enterococcus RepID=C9A8J1_ENTCA Length = 1205 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 95/620 (15%), Positives = 194/620 (31%), Gaps = 66/620 (10%) Query: 307 GRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELEN-RAVAGVNIEEFSRSDNKR 365 GR Y L+S ++ ++D + ++ + N + Sbjct: 273 GRTYYQLIS-FARENQVPIYLDQKLSVNQEVDKEAKGSMQQAYNEIETFWRQTQSQVNYQ 331 Query: 366 PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE---EDPTLTPRDIIVMVADIDSYSPFI 422 + + +P+ E+ + + M+ P L R+I +++A+ + Y +I Sbjct: 332 QQSSVKDFLAVWKVGNPEEEIRQIAASIRGMMSDKKRYPALRYREIQLLIAEPEIYHQYI 391 Query: 423 QAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR 482 +F + +P+ I + + HP++E + + F D+L LL + Sbjct: 392 PKIF----TEFEIPFYIDEEQMMAQHPLVEFLNAFFACQSYGFRLNDILRLLRTELYLPA 447 Query: 483 FDITEEG-----------LRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRM 531 +E + + G + EL Q Sbjct: 448 AYRSEADWLVGRDQFRKLVDITENKALAHDFQ-GASWTRNEDWELIEYLQSEEEQTDKVD 506 Query: 532 LLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVC 591 L Y + + Q V D L A + L + E L W Sbjct: 507 LTAYTNQLRRAFKQDVA--DTLDWLTAARTNR--DAVELLYRFLLNAGVEEQLRHWRD-- 560 Query: 592 RDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERIS 651 A + Q ++ E ++ +L D L L+ Sbjct: 561 ----QAIQQGKLDQARNHEQAWQALMDLLDEYAAIYGEESFDFALFEDVLLTGLENVTFG 616 Query: 652 QRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD 710 + A VNI L R K+ G+N+ PR++ L++ + ++ + Sbjct: 617 KIPTAIDQVNINRLDLARPKQAKITFAPGLNETALPRKIENK--TLLTNEERQHFNQLFN 674 Query: 711 DDRYL--------------FLEALISAQQKLYISY-IGRSIQDNSERFPS--VLVQELID 753 ++YL F L+SA + L +SY + Q N + P +V+ L Sbjct: 675 GEKYLRDTVVEGSVKEPFAFYSVLLSATEHLSLSYAVNFDTQQNIKMSPYLDRVVKRLDV 734 Query: 754 YIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD-----PQNYQPGERQSYAREWLP 808 + + L R + ++ P+ ++ ++ EW Sbjct: 735 PLQERGILTLVSDPRNYVGSYRGLIYQINNLSQQAQKNKENLPRVWEQLKQALLRSEWTD 794 Query: 809 AASQAGKAHSEFVQPLPFTLPETV---------PLETLQRFWAHPVRAFFQMRLQVNFRT 859 A+Q ++ + P+P + + + ++ F+ + F L++ R Sbjct: 795 LAAQVFESQTHQNIPIPLSQAQAAALYGPSIYSSISQMETFYQCEYKYFVSYGLRLKERE 854 Query: 860 EDSEIPD-TEPFILEGLSRY 878 P T F + L R+ Sbjct: 855 VYGLNPAMTGEFFHDALDRF 874 >UniRef50_C2EDG9 ATP-dependent deoxyribonuclease, subunit B n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EDG9_9LACO Length = 1170 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 74/602 (12%), Positives = 181/602 (30%), Gaps = 64/602 (10%) Query: 337 NIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAM 396 + D+ LE+ + V + S+ + + E+ ++ M Sbjct: 289 RVSQDLCNLEDYWINSVAGFSAKEKATF-----ENDSVKIYGAKTRTEEIRFAAAKIRQM 343 Query: 397 LEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFIS 456 + +D +++ +D Y ++ +F A +P + ++ HP++E + Sbjct: 344 VAV-EGYRYKDFLILTRHLDLYKNVLEPIFAKA----KVPIFVDLQKKVSDHPLVELLNA 398 Query: 457 LLSLPDSRFVSEDVLALLDVPVLAARFDITEEG----LRYLRQWVNESGIR---WGIDDD 509 L ++ + D++ LL +L + D+ E L + + G W + + Sbjct: 399 LFAVKRRHYRYNDMMRLLKTELLIPK-DLKVETYRRMLDQTENLILKFGYEGSAW-LKEK 456 Query: 510 NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP--YDESSGLIAELVGHLASL 567 + + T R+ + + + +LP + + + Sbjct: 457 DWIYYRFGESDFGTRTDAEDRITKE--VNVIRRYVKEILPPFFKQIDEAENGRKAAVC-- 512 Query: 568 LMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQ 627 L + ++ LE+W + + + + ++ E + Sbjct: 513 ---LVNFLVDNGVKKRLEDWRQNLME------QGLLQESERPEQVWNLFCQMMDEFVENL 563 Query: 628 YGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 + L D + + V+I ++ KVV ++G D V P Sbjct: 564 GDLPFEEEDFLNLLQTGFDAGEYRRVPASLDEVSISETGMVQPTDRKVVFMIGSTDLVMP 623 Query: 687 RQLAPLGF------DLMSQKPKRGDRSRRDD--------DRYLFLEALISAQQKLYISYI 732 ++ LM + + D+ + +L A +S +KL +Y Sbjct: 624 DRIQNKSLLSDGDRSLMLENALLSENQVLDETSEKSMLSEPFLNYLAFLSPTEKLIFTYP 683 Query: 733 GRSIQDNSERFPSVLVQELIDYIG------QSHYLPGDEALNCDESEARVKAHLTCLHTR 786 + D + S V+ + + ++ ++ H ++ Sbjct: 684 HGNDADGGIKM-SPYVERIKQHFLLEELEISEFDKLSTPKGTIEDLICEIRRHADEKNSV 742 Query: 787 MPFDPQNYQPGERQSYA--REWLPAASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWA 842 F Q Y + + + + Q + + + L+ F+ Sbjct: 743 PAFWKQVYAKMKTVDAEMTEKVMSSLRYRNIPEQLTAQNARKLYGKELNTSISKLETFYK 802 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDT--EPF--ILEGLSRYQINQQLLNALVEQDDAERLF 898 +P F + L + R + F +L+ R L + + +F Sbjct: 803 NPYEYFLRYGLGLMERDVFEMSAASTGSYFHAVLDAFFRLLFKNNLTLKNLSSEQFNEIF 862 Query: 899 RR 900 Sbjct: 863 EE 864 >UniRef50_A7VJ44 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VJ44_9CLOT Length = 1128 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 73/549 (13%), Positives = 160/549 (29%), Gaps = 55/549 (10%) Query: 334 LLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRL 393 L I + E N+ K+PL+ I Q E+ + + Sbjct: 274 LPGTINYRLGENRELFFLERNLFRSPYQKWKQPLER----IHLTATGDAQDEIVFVASTI 329 Query: 394 LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEA 453 ++ + +DI ++ D++ ++ + +P I +++P E Sbjct: 330 RRLV-REKGYRYKDIAIVAGDLEQ----ASHIYERVMDEYEIPVFIDANACLKANPCAET 384 Query: 454 FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513 S+L++ F + V L + D++ E + L + + G+R G N Sbjct: 385 IRSVLAVLADDFSYDSVFRFLKAGMT----DLSFEDIELLENYALKRGVR-GYSRWNRA- 438 Query: 514 LELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNI 573 + + T + + + + + + A+ + L Sbjct: 439 --VSENYEKTSPVNIEEIRQAFMK-----------MFGDIRKVFADKKAVTKDYVEALYD 485 Query: 574 WRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP 633 + + LE + A I ++ + + + Sbjct: 486 FLLQIHMYEKLEARKNELYE------ENRINEGDAYGQIFEKTVRLFDKIAELLGDTKMS 539 Query: 634 LSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL 692 + + + L + V I + R KV+ +NDG+ P+ Sbjct: 540 VKEFYEIVDTGLSDIEVGVVPPTVDRVLIGDITRSRLNHIKVLFFTSVNDGIVPKAPKKG 599 Query: 693 GF------DLMSQ---KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERF 743 D++S + D+ +++ L LYISY S Sbjct: 600 RILSDRDRDILSDCGLELAPSDKQNSYIEQFYIYTILTKPSDYLYISYHKLSASL-ESMR 658 Query: 744 PSVLVQELIDYIGQSHYLPGDEALNCDESEAR-VKAHLTCLHTRMPFDPQNYQPGERQSY 802 PS L+ + D A ++ R ++ L + + + + Sbjct: 659 PSYLLGRISSIFPSLQAEEYDAASCMPDTVNRSLRRILRAEDSEDAESRILTRILTEKGF 718 Query: 803 AREWLPAASQAGKAHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQV 855 A E A G+ + + LP + + L+ + F + L++ Sbjct: 719 AGEL--TAIYKGRTYRNVAEQLPPETIALLYGRYLHASVSKLELYARCGFAYFLKYGLRL 776 Query: 856 NFRTEDSEI 864 R Sbjct: 777 KEREMYQVD 785 >UniRef50_Q1Q1J4 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1J4_9BACT Length = 1099 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 110/711 (15%), Positives = 225/711 (31%), Gaps = 108/711 (15%) Query: 249 GDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLAS----WG 304 DI+ + +++L T + +A + +LA Sbjct: 151 ADIQKLSDISRLFTLFQNTLNASGISHDSNLYRSAAKHAADSEYLRKFKYILAYGFYDLT 210 Query: 305 KLGRDYIY---------LLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 + +D+ L + + + +V ++ L I DI +L + G + Sbjct: 211 GVEQDFFSEIFRYYPTILFLPYKKNHAVFTYVKHFYESFLLGIARDIEDLPPDDLQGFSY 270 Query: 356 EEFSRSDNKR-------PLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDI 408 + S+ K P P +++ E+ V+ +L ++ + DI Sbjct: 271 LMDADSETKTSLHGESMPDAPSLDNLSIINVSGKHDEIWVIAKEILKLI--NKGYVFGDI 328 Query: 409 IVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSE 468 ++ ++ Y IQ VF + +P+ D+ + +P+ LL L F Sbjct: 329 GIVARELGQYLNIIQEVF----QENAIPFTTLDKEPIEKYPLFTMIKQLLLLDRENFYRP 384 Query: 469 DVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 V+ +L+ P F+I L+ D + + L + + G+ Sbjct: 385 MVIDILESPY----FNIPVPELK---------------DVLSRQNLWDIISRTNGIHSGI 425 Query: 529 TRML-----LGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERP 583 L L AM + +LP++ + + + L +++ L+ L ++ Sbjct: 426 RCWLSKLEQLKNAMAEPAE--EDILPHNI--NISCDQIESLKNIVQLLSNDLLSLQEKAT 481 Query: 584 LEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQA------IIAEGLGAQYGDAVPLSLL 637 + + L+ + +E + + + + + Sbjct: 482 WSQMCQKTKLFLDKYIHIPSEDIDQEIIKRDIFIKERIFCLFDTLSILDRIDKEITYDQF 541 Query: 638 RDELAQRLDQERISQRFLAG-PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL 696 D QE I V + M R IPF+++ L+G+N+ +PR + F Sbjct: 542 ADTFINACKQEGIQAGTANNKGVRVMNAMSARGIPFRILFLVGLNEKEFPRAIFEEPF-- 599 Query: 697 MSQKPK-----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 + + +++R LF L +AQ+++Y+ Y RS + + PS Sbjct: 600 LPDHTRRILSEALGNHIPEKLRGFEEERLLFYFLLNAAQERIYLLY-ERSDEAGKPKTPS 658 Query: 746 VLVQELIDYIGQSHYLPGDEALNC----------------DESEARVKAHLTCLHTRMPF 789 + +++ I H D+ ++ Sbjct: 659 HYIMDILQNIKGIHTRNEDKENKSPVKMNVPRSIKNKLCKEDISLLTPNEAVIRMVLEHI 718 Query: 790 DPQ---NYQPGERQSYAREWLPA---------ASQAGKAHSEFVQPLPFTLPETVPLETL 837 DP N G +Y R S S+ + + L Sbjct: 719 DPSCCINAIGGNLAAYTRSKSALQAIECFSPYLSAYDGIVSDGEHWYKNRVQKGFNPTML 778 Query: 838 QRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNAL 888 + F A P + F + LQ+ E E L L I ++L+ L Sbjct: 779 ETFGACPFQFFMREILQL---EPLEEPEKGETISLPKL--GTIYHEILDTL 824 >UniRef50_C4G8W0 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G8W0_9FIRM Length = 1199 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 136/1019 (13%), Positives = 291/1019 (28%), Gaps = 144/1019 (14%) Query: 17 MEFIVERERLDDPFEPEMILVQ---STGMAQWLQMTLSQK-FGIAANIDFPLPASFIWDM 72 + + R ++P +++V + + L +++ I N+D + + Sbjct: 14 LFDQILRRAKEEPKRHFIVIVPEQFTMSTQREL---VARSSQKIIMNVDVLSFNRLAYRV 70 Query: 73 FVRV---LPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSS 129 F L ++ +++ K + ++ ++ T+LR + ++ L + Sbjct: 71 FEETGTKLDDVLEDT--GKNLLLRRVAQE-----HEKELTVLRGNVRRPGYIDEIKSLLT 123 Query: 130 KAADLFDQYLV---YRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHR 186 + A QY + D + G E + +++A E Sbjct: 124 EMA----QYGIGPKEFADLAELTDMGSSFRRKAEDLS---VIYRAFREAIEGRYITAE-- 174 Query: 187 ANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQ---ALGKHIEIHLLFTNP 243 + +R + ++ + + + I G + P+ Q L L I + L Sbjct: 175 -EVLERLAQLMDQSALIKDAV---IAIDGFTGFTPIQKQVLAQMMRLASSIYVTLTM--- 227 Query: 244 CRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASW 303 D + + L + E E + EN + GNP AS Sbjct: 228 ------DPGERITGSHLDYELFAMTKEMGEGLVRLAGENRCPIEEPVCL--TGNPRFASA 279 Query: 304 GKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDN 363 L L + + Q+D + A + + + S Sbjct: 280 PMLAYLEANLFRPKSRPYGKEL-SGLDGKETAGCSQADT---KETASCAQSDAKENASRA 335 Query: 364 KRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQ 423 + DP I S + E+ + + + D RD ++ A++ Y+ + Sbjct: 336 QGESDPKMRQIRLGRAASFRDELAFAGEEIRKKI-RDQGGRYRDFAIVCANLSDYADYAG 394 Query: 424 AVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF 483 +F LPY + + HP++E +S LSL F E ++ L + Sbjct: 395 QIFDKMD----LPYYLDQEQDILFHPLVEFILSSLSLFTEDFSEESLMQQLRSGL----A 446 Query: 484 DITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE 543 I L ++++ IR G + ++ G Sbjct: 447 GIDPSDADLLERYIHARRIR-GFARYRRPFSGRVRNFSQEQMLRVEQLRKGIVA-DISDF 504 Query: 544 WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDA 603 QS+ + + A + + + E LE CR D Sbjct: 505 RQSMCEENAVTRDRAL----------AIYAYLQAHEVEEKLEARANACRA------EGDE 548 Query: 604 ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNIC 662 + + + + + + + LS L L + + V I Sbjct: 549 IAASIHSRVFGLVMETLEKMSDLLGEEKMSLSDFAQLLEAGLRAISVGTVPPSFDSVVIG 608 Query: 663 TLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK---------RGDRSRRDDDR 713 L R K + +LG +D PR G +++ K GDR R R Sbjct: 609 DLERTRLEHIKTLYVLGASDAAIPRSAESSGLFSQAEREKLREKQIDLAPGDRERAFMQR 668 Query: 714 YLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESE 773 + AL ++L +SY S D S S L+ + + + Sbjct: 669 FYLYLALTKPSEQLVVSYARLS-SDGSALRESYLIGLICRLFPGLGVENLEGRADLQRLV 727 Query: 774 ARVKAHLTCLHTRMPFDPQN---------------YQPGERQSYAREWLPAASQAGKAHS 818 A + + + + E L + + + Sbjct: 728 TAPAALDYLPDALRSLSEKEPSREEGQLACAIYEVLKEDKNFTDRAEELFKTAFSEQGQD 787 Query: 819 EFVQPLPFTLPETV---PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGL 875 + L + + + L++F + + ++ E P+ + + L Sbjct: 788 RLSERLIKRVSGDLIQGSVSRLEQFCRCAYAYYLRYG----LLLQEEEEPEIDFLDMGNL 843 Query: 876 SRYQI-------NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQE----- 923 + ++ L+ D + E+ + + Sbjct: 844 HHQTLEFFSKRMKERKLSWKEISDSDAEALLEEAFRNAVGQMERAELLENRRQAQVIRRM 903 Query: 924 -------MQQLADRVIACRQPGQSMEIDL--------------ACNGVQITGWLPQVQP 961 + L ++V + E+ +Q++G + +V Sbjct: 904 KSVLRCSIWALREQVTRGDFVPEEFEMSFGPRDQLSSMRFQLGEREKLQLSGKIDRVDC 962 >UniRef50_C5RAZ7 ATP-dependent deoxyribonuclease, subunit B n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAZ7_WEIPA Length = 1188 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 87/572 (15%), Positives = 171/572 (29%), Gaps = 89/572 (15%) Query: 370 LDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA 429 D +I H+ +EVE + + + RD ++M D+ Y + AVF Sbjct: 317 ADDAIEIWQTHTRYQEVEQMARLIRQEVAAGKH-RYRDYLLMTRDLGQYENIMPAVFARY 375 Query: 430 PADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDI---T 486 +P + R +HP++ LL L + + DV+ LL +L + Sbjct: 376 E----IPIFMDLDRPMSAHPLVAFLDKLLHLAPA-YTMTDVMGLLKTELLIPDGVLLADY 430 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF-GLTRML-----LGYAMESA 540 E L +V I G + + + R+ L + Sbjct: 431 REALAETENYVLAKNIA-GWQWTDKTPWQYDRQALTSDDEVTRERVASKDAQLAMIHDQI 489 Query: 541 QGEWQSVLPYDESSGLIAELVGHLASLL------MQLNIWRR------GLAQERPLEEWL 588 L + + + E+ L + + +L WR L + E+ Sbjct: 490 SQTVAPFLHHLQQAPTAREMARELYNFITQIGIQKRLINWRDNAIEQGDLWSAQQPEQVW 549 Query: 589 PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQE 648 V +L+ F + +++ + A A + + + + Sbjct: 550 RVFISILDDFVQVFDSEVMTLEVLQDVFTAAFDSAKYAGIPATMDQVHISESGIVQRTGY 609 Query: 649 RISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSR 708 F A N+ + +++I ++DG L ++ ++ + Sbjct: 610 ETVIVFGATNHNLPAVTRIKAI---------LHDGDRAILQPALPDNVFLKETSE---QQ 657 Query: 709 RDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALN 768 + L A++ A Q+L +Y S D S + PS V + L Sbjct: 658 MAQESLLMYRAMMVADQRLIWTY-ATSDGDGS-QQPSTYVTRIQKQFQL--------PLV 707 Query: 769 CDESEARVKAHLTCLHTRMPFDP------QNYQPGERQSYARE----WLPAASQAGKAHS 818 ++ +H + P N Q +R + + W Q K Sbjct: 708 QFDALPDPMSHHVDDYVGTPTSTIAQIIIANRQAKQRGTVDGQLSAAWRNLIQQVQKIAP 767 Query: 819 EFVQPL-----PFTLPETV---------------PLETLQRFWAHPVRAFFQMRLQVNFR 858 +Q L PE + + L+ + +P F Q L++ R Sbjct: 768 YQLQHLLGSLHYQNEPEKLQPVLVNTLFGHDLKASISRLESYSRNPYEFFLQYGLRLQER 827 Query: 859 TEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 L + + +L L + Sbjct: 828 QV---------LQLTPAEKGTLMHAMLEQLFQ 850 >UniRef50_Q04GY8 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Oenococcus oeni RepID=ADDB_OENOB Length = 1161 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 85/604 (14%), Positives = 187/604 (30%), Gaps = 80/604 (13%) Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSI---TFHVCHSPQREVEVLHDRLLAMLEED 400 + + + +N E+ R + S V + E++ + + L ++ Sbjct: 276 NIRPLSESQLNFEQSWRELETQGFTSQKRSFPQTKIVVSSDQEHEIDFVARSIRQRLVDN 335 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 P L +DI+V+ +D Y I +F LPY + HP+ +LL Sbjct: 336 PKLRAKDILVLAQRLDGYKNIIPKIFDRYD----LPYFLDKDTRMSDHPLASLAENLLG- 390 Query: 461 PDSRFVSEDVLALLDVPVLAARFDIT-EEGLRYLRQWVNESGIRWGIDDDNVRELELPAT 519 + F E ++ + +L+ + + + L YL ++ + Sbjct: 391 SSNEFAYERIMKIFRTGLLSWQLEDNFQTALDYLENYLLANN-----------------P 433 Query: 520 GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAE----LVGHLASLLMQLNIWR 575 + WR +++ + Q + + LI ++ L + Sbjct: 434 KEKNWRQEEFQLI---QISDEQDLNDDHKIDRQINALINRMRLFIIKILDDFQEKFAKVE 490 Query: 576 RGLAQERPLEEWL---PVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 + L WL V + +LN D + L+ E Sbjct: 491 NYHQAVKTLYNWLTDQQVDQVLLNQANDGDDRGQQTWKLLLSTL----DEVDQLIGDKKY 546 Query: 633 PLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 L S + + + ++ FK + + +D P Q Sbjct: 547 SQKDFLQILKDGFAAASFSGIPASLDQITVSESGIVQRNDFKALYFIDASDASLPAQTNS 606 Query: 692 LGFDLMSQKPKRGD---------------RSRRDDDRYLFLEALISAQQKLYISYIGRSI 736 + + D R + + F +++SA + SY + Sbjct: 607 SSLIDDFDRLQLIDDFSKAQKPYYLQDTSRQEMTAENFRFYSSVLSATDSVTFSYSKLRL 666 Query: 737 QDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHL--------TCLHTRMP 788 D + S ++ L + L ++ + +S+A + +L T Sbjct: 667 -DGKQNELSPYLRRL--SLKNVSDLKIEKIPDLPQSQADLVDYLGTANSSAAILSQTAQN 723 Query: 789 FDPQNYQPG-----ERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE--TVPLETLQRFW 841 F +R Y + L A + + + + E + + +++++ Sbjct: 724 FGEDFIDGLTDLLIKRNPYFQRILQALHYNNQPVTLRPELIKKLFGEDLRLSISQIEKYY 783 Query: 842 AHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD-DAERLFRR 900 ++P F Q L++ R + + L G + I +Q++N L+ + D L + Sbjct: 784 SNPYEYFLQYGLRLKKRNQFTVDA-----ALSGTYYHSIFEQVINRLIGKRTDFHDLSDQ 838 Query: 901 FRAA 904 Sbjct: 839 ELKK 842 >UniRef50_Q38X70 ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=ADDB_LACSS Length = 1186 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 93/704 (13%), Positives = 214/704 (30%), Gaps = 74/704 (10%) Query: 300 LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFS 359 L + + GR Y L + +D D+ + + L+ V+ + Sbjct: 247 LNFFFQAGRTYYN-LYQQARLNHVPVMMDQMADS--QRLTPALAALDQFWVSSESPGNRK 303 Query: 360 RSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 419 S P+ D + + E+ + + +++ RD +++ + Y Sbjct: 304 LS----PVPVADH-LHVVAAENRYAELRYVAREIRRLVQTGH-YRYRDFLILTRHLAPYQ 357 Query: 420 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 I + +PY + +HP++ LL + + EDV+ALL +L Sbjct: 358 TMIAPILTEYE----IPYFCDLPQTMAAHPLVSLLEKLLDVNLHFYRYEDVMALLKTELL 413 Query: 480 AAR-FDITE--EGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 + I E L + ++G G D + + + +++ G Sbjct: 414 IPKGMSIAEFRADLDLCENLILKNGYE-GKDW--LNDFDWQFYRFGSYQEGTRTTQDEAL 470 Query: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLN 596 E G + V + ++ L + +R L W + + Sbjct: 471 TERINGIRRYVQATLPPFYRALKAAKTGRQVVQVLYQFLIDHGVDRQLLHWRD--QALAA 528 Query: 597 AFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGD--AVPLSLLRDELAQRLDQERISQRF 654 + E + Q + + + L+ + L+ + +Q Sbjct: 529 NQVAQAGQPEQTWSTFMQMLDEYVTLLGDVSFEEDNTEQLNEFKQLLSAGFAAAQYAQIP 588 Query: 655 LA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS------ 707 V + +++ ++ ++G D V P Q+ + + D Sbjct: 589 STLDQVVLSESGMVQTKKRQITFMIGSTDQVMPDQIENTALLTDQDRQRLLDNEGQVTPL 648 Query: 708 -------RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 + + + YL A +S+Q +Y +Y + + + S V+ + ++ + Sbjct: 649 LNESSVGKMNAEPYLNYLAFLSSQTTVYFTYPLGNG-EGTAFKISPYVERIRNHFDLTIQ 707 Query: 761 -LPGDEALNCDESEARVKAHLTCLH---TRMPFDPQNYQPGERQSYAREWLPAASQAGKA 816 + +++L E+ L +R + Q P + + R A Sbjct: 708 KIAAEQSLQSTETPQGSWRSLLSDLIQVSRQAQENQTLIPEQWLTTYRLLQQAPQSQFLT 767 Query: 817 HSEFVQPLPFTLPETV---------------PLETLQRFWAHPVRAFFQMRLQVNFRTED 861 F PE + + L+ F+ + F + L++ R Sbjct: 768 TQLFQSLNYRNEPERLTPEIVTGLYGNEIHTSISKLEEFYQNQYAYFLKYGLKLQERPVF 827 Query: 862 SEIP-DTEPFILEGLSRY-------QINQQLLNALVEQDDAERLFRRFRAAGDL------ 907 P +T F E + R+ QI L+ + + + Sbjct: 828 ELTPANTGNFYHEVMDRFIKLIQGQQIALPELDDQQIDKLVSEVLAKTYEQPEFKILNKT 887 Query: 908 -PYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGV 950 G + +T + L ++ + + + ++ V Sbjct: 888 ARMGYIRQQLMQTVKRVSLALRNQ--SLSTNLRPLATEVLFGQV 929 >UniRef50_C0EHH2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHH2_9CLOT Length = 1119 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 95/705 (13%), Positives = 207/705 (29%), Gaps = 111/705 (15%) Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSS---ITFHVCHSPQREVEVLHDRLLAMLEEDPT 402 ENR + R+ + ++P + + + + EV+ + + +++ Sbjct: 263 ENRLFVHPELAHLERNILRNRIEPYQGTCEHVKVLLAPNEYGEVDAVLSEVWELVQRH-G 321 Query: 403 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 462 R+I ++ D++SY Q V SA +PY + + + + P++ SLL+ D Sbjct: 322 YRFREIALITRDLESY----QGVLESALRKYGIPYFMDETVSVEHDPLIRFASSLLAAAD 377 Query: 463 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 VLALL + RF +T + Y ++ I +L P T Sbjct: 378 GGKDISPVLALLKCGLT--RFGLT--QISYFENYLYTWNI-------TKDQLNQPFTHNP 426 Query: 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLM-------QLNIWR 575 G+ + + Q DE +AE++ L L Sbjct: 427 ----------RGFVDRETEQDGQVTALADEVRAAVAEVISLLRGAEQTARGYGSALFEAL 476 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLS 635 L L + + F E + I+ + + L Sbjct: 477 HRLGVADVLNQRVERLNG--EEKFPEAEEQAR----LWDVLIDILEVLAHSTGEVRLTLR 530 Query: 636 LLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF 694 R+ + + V I + + V + G +G++P G Sbjct: 531 RYRELFDLSAKGYDLGSIPQSLDAVMIGSAERTIIGNSRAVFVFGAGEGIFPLSPQFDGV 590 Query: 695 DLMSQKPKRGDR---------SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 S + + R ++R+ ++L S ++ L +S I S +PS Sbjct: 591 FTDSDREELKKLGVELSKPIGDRILEERFSAYKSLSSPREHLVVSARLADIA-GSPLYPS 649 Query: 746 VLVQELIDYIGQSHYL------PGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGER 799 ++ ++ G D + + ++ H + + + E Sbjct: 650 EVITQITKMFGSGVVTYTADLGLADFCRTKESAFLQLAFHYRSRDGQAEALRRYFAQDEE 709 Query: 800 QSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLE--TLQRFWAHPVRAFFQMRLQVNF 857 L AA+Q G + + + ++ ++ F ++ Sbjct: 710 YGDRLRRLDAAAQTGGFRLYDRKNAERLFGRQLAVSPTQVENYYKCGFLFFCANGMKAYP 769 Query: 858 RTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDA--ERLFRRFRAAGDLPYGAFGE- 914 R + + L LS ++ +L L+ +A L G + Sbjct: 770 RGKAN---------LNPLSLGKVTHHVLEQLLSTPSFYQMEYEEIAQAVEQLLDGYIDQF 820 Query: 915 ---------IFWETQCQEMQQLADRVIACRQP-----GQSMEIDLACN------------ 948 F + + L + ++ Q +L Sbjct: 821 MGGKQDKTARFLQLYRNTARSLVELARNIQKEFAHCRFQPAAFELEIGDKGAVQPITLPL 880 Query: 949 ----GVQITGWLPQVQPD--------GLLRWRPSLLSVAQGMQLW 981 V++ G + +V ++ ++ +++ Sbjct: 881 SDGCSVKLIGEIDRVDSYQKDGKTYIRVVDYKSGAGRTFDLSEIY 925 >UniRef50_B1MZM3 ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Leuconostoc RepID=ADDB_LEUCK Length = 1171 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 82/671 (12%), Positives = 197/671 (29%), Gaps = 113/671 (16%) Query: 377 HVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLP 436 V + E++ + R+ +L P L RDI+++ D+ Y+ I V LP Sbjct: 322 FVAENTMVEIQEVARRIRQLLVAQPDLRLRDILILARDLTPYTGHIPEVMQQFD----LP 377 Query: 437 YAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFD---ITEEGLRYL 493 Y + + +HP++E ++LL RF + V+A+L +L D + E + Sbjct: 378 YFLDTDQKMTNHPLVELLLNLLRPAKERFQYQQVMAILKTGLLRPYTDGSLVPEGDFFDI 437 Query: 494 RQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDES 553 +++ L + TWR L E E V+ D++ Sbjct: 438 VSYLD-------------NYLYANQPFERTWRDLDHPFTLFTVSEDEDDEDARVVLDDKT 484 Query: 554 SGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDA---------- 603 E + + + ++ L Q + + + + L + + +A Sbjct: 485 VNRRIETLRRFV--IDAFDSLQQQLNQAQTMRQAATLIILWLEKYHVTEAILSQRDTLLA 542 Query: 604 ----ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GP 658 + + + + + + L + L + S Sbjct: 543 AGELSRSREGEEVWEMMTQTLDDIVAIDGDERFELEKFKAILVAGFEGATFSGIPNNLDQ 602 Query: 659 VNICTLMPMRSIPFKVVCLLGMNDGVYPRQ---------------LAPLGFDLMSQKPKR 703 + I ++S ++ + +G P Q L + + + Sbjct: 603 LTISEAGIVQSNDYQYLFFIGGTRNNLPAQLKSRALINDAERLIVQPALQENSTPKYLQN 662 Query: 704 GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 763 + + ++ LF AL +A + + +SY S + L+D + + Sbjct: 663 TAQQQMAEENLLFYGALTAATKNIVLSYPALDAG-GQISDMSPFFKRLVD----AFNITV 717 Query: 764 DEALNCDESEARVKAHLT--CLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFV 821 ++ + + + T + +Y + + Sbjct: 718 NKVTATPATSQALLKYYVGSVRSTLGELVKIAASQQQTSAYQALRNTINQSEPERLERVL 777 Query: 822 QPLPFT----------------LPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865 + + + L+ ++ +P+ F Q L + R + Sbjct: 778 SAPNYKNQTETLKPELVQALFGETLNMSISQLESYYNNPLAYFLQYGLALKERLTNRLNV 837 Query: 866 DT------------------EPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDL 907 + L +S+ + QQL+ + + A+ ++ + G + Sbjct: 838 AQTGTLYHAVFEGVVQQLIIQQLSLRDISQKAL-QQLVADNMAEITAQPAYQMLQETGKM 896 Query: 908 PYGAFGEIFWETQCQEMQQLADRV----------------IACRQPGQSMEIDLACNGVQ 951 + + + + R RQ ++ + V Sbjct: 897 ---RATQHYLAKVSEILAVNMQRAARVNHAQPKAVERLFGFPNRQSLPALVVSTPQATVH 953 Query: 952 ITGWLPQVQPD 962 + G + ++ Sbjct: 954 LRGKIDRLDSQ 964 >UniRef50_B5E4P4 ATP-dependent helicase/deoxyribonuclease subunit B n=32 Tax=Streptococcus RepID=ADDB_STRP4 Length = 1091 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 86/610 (14%), Positives = 200/610 (32%), Gaps = 84/610 (13%) Query: 326 FVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSS-ITFHVCHSPQR 384 + D + + D + +R + + S+ +D D + C + + Sbjct: 251 YQTPAQDCSQTHEKMDSFDKASRLLESS----YDFSELALDVDEKDRENLQIWSCLTQKE 306 Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 E+E++ + L E+ L+ + +++ D+ SY ++ +F +P+ + A Sbjct: 307 ELELVARSIRQKLHENSDLSYKHFRILLGDVASYQLSLKTIFDQY----QIPFYLGRSEA 362 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 HP+ + S+L+L RF ED++ LL + D+++ + Q++ GI Sbjct: 363 MAHHPLTQFVESILALKRYRFRQEDLINLLRTDLYT---DLSQSDIDAFEQYIRYLGI-- 417 Query: 505 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL 564 + + + T H +F L R+ +VL + L Sbjct: 418 ----NGLPAFQQIFTKSHHGKFNLERL--------------NVLRLRILAPLETLFASRK 459 Query: 565 ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL 624 L W L + +D+ + E +A + + + ++ + Sbjct: 460 QKAENLLQKWSVFLKEGAV----TKQLQDLTTTLEAVEQERQAE---VWKAFCHVLEQFA 512 Query: 625 GAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDG 683 G V L L + + V + + + + V +G+ Sbjct: 513 TVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQD 572 Query: 684 VYPRQLAPLGFDLMSQKPKRGDRSRRDD--------------DRYLFLEALISAQQKLYI 729 P+ L++ + ++ ++ +RY L + SA+++L++ Sbjct: 573 NLPKISQNTS--LLTDEERQNLNQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFL 630 Query: 730 SYIGRSIQDNSERFPSVLVQELIDY-IGQSHYLPGDEALNCDE--SEARVKAHLTCLHT- 785 S S+ + SE S +QELI + + + L+ ++ S + + L H Sbjct: 631 S--APSLFNESESKESAYLQELIHFGFRRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQ 688 Query: 786 ------------RMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPL-PFTLPETV 832 + + Q +P + + + +Q L P + Sbjct: 689 GEMSDTEQDLTFVKVLSRVIGKKLDLQGLENPAIPTSPSSKTLAKDTLQALYPAKQEFYL 748 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 L F+ + F + L + + S ++ ++ Sbjct: 749 STSGLTEFYRNEYSYFLRYVLGLQEELR---------LRPDARSHGNFLHRIFERALQLP 799 Query: 893 DAERLFRRFR 902 + + +R Sbjct: 800 NEDSFDQRLE 809 >UniRef50_A8YVK1 ATP-dependent helicase/deoxyribonuclease subunit B n=27 Tax=Lactobacillus RepID=ADDB_LACH4 Length = 1160 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 80/572 (13%), Positives = 168/572 (29%), Gaps = 68/572 (11%) Query: 333 NLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDS--SITFHVCHSPQREVEVLH 390 + L D + E + E S + +D + S E + Sbjct: 257 SFLQERDMDYVASEFPIPSEPTPREILNSLWTETVSKVDELKQVQLVKADSRYAEAYFVA 316 Query: 391 DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV 450 + + + RD +++ D+ Y ++ + +P+ ++ + HP+ Sbjct: 317 RTIYQQVALN-NYRYRDFLILAPDLKEYETYLTPILRQN----NIPFFNDLQQEMKYHPL 371 Query: 451 LEAFISLL---SLPDSRFVSEDVLALLDVPVLAARFDITEE----GLRYLRQWVNESGIR 503 + +L L ++ F ++ +LA+L +L + E + L +V GI Sbjct: 372 VVLIENLFNLRDLKENPFQTQSMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGIN 431 Query: 504 WGIDDDNVRELELPA----TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAE 559 + + + + R L GY ++ + + E + Sbjct: 432 HNLWKKHFADFVSAEVIRLDKIDEEVAKIDR-LRGYLVDKVTNLFTKL----EQEKDSQK 486 Query: 560 LVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAI 619 + L LE+W + D + + + Sbjct: 487 ALTIFFDFL-------TKNGIAERLEQWRDAANN------AGDLQQAQQPEQLWDLLIQL 533 Query: 620 IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLL 678 + + L + L + L + SQ VN+ + +++ +K V ++ Sbjct: 534 LKDYLAIN-PEKFDLDEFFNMLISAFKEATFSQIPSTLDAVNLSEMGMVQTSGYKQVFII 592 Query: 679 GMNDGVYPRQLAPLGF----------DLMSQKPKRGDRSRR--DDDRYLFLEALISAQQK 726 G G P GF D R D Y F +L AQ + Sbjct: 593 GATSGNLPSIEKKPGFLTTENLNQLQSSFESDAYLEDNQRLNNLDQNYQFGLSLALAQDR 652 Query: 727 LYISYIGRSIQDNSERFPSVLVQELIDYIGQSH-----YLPGDEALNCDESEARVKAHLT 781 +YISY + N + PS+ Q L DY E L+ + +L Sbjct: 653 VYISYPVLNA-SNEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQELLSFITNPDASLGYLA 711 Query: 782 CLHT---------RMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 +++ + + + + E + + Sbjct: 712 YINSNTSDEAIDELLKITQKYLPQKVKAVLDASDFD---NQPEDIGEDLAAELYGKNLYS 768 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 + L+ F+ + F L++ R E+ Sbjct: 769 SVSQLETFYENSYEYFLTYGLKLRRRLENEFD 800 >UniRef50_Q1WRR9 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Lactobacillus salivarius RepID=ADDB_LACS1 Length = 1193 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 88/682 (12%), Positives = 196/682 (28%), Gaps = 86/682 (12%) Query: 310 YIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDP 369 YLL ++ DV P Q +E +E + Sbjct: 265 TYYLLYQQARKAQVKILNDVYP-------QELRVETPELQSLAKYWKESTDLKPINVEKI 317 Query: 370 LD-SSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGS 428 D ++ + E++ + R+ M+ D +++ D++ Y I+ +F Sbjct: 318 GDNHNLQVIKADTRMTEIKEIATRIKQMVAL-KDYRYADFLLLTPDLNKYRNIIEPIFND 376 Query: 429 APADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR-----F 483 +P + + HP++E +L ++ + D++ LL +L + Sbjct: 377 Y----KVPIFVDLAKKMIDHPLVELLTALFNVKARHYRYVDMMRLLKTELLIPKTEYGYL 432 Query: 484 DIT--EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQ 541 I + L + + G G + G + FG + + Sbjct: 433 GIKQFRQDLDLTENLILKFGFE-GSQWLRKDDWVYYRFG--SSDFGTQTDVQEKITKQVN 489 Query: 542 GEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLP 601 + + + + L + L W + + Sbjct: 490 VIRRYIKEILPPFFKQLDEAENGKEAAQILMNFLIINGVPEQLINWRNKALEQGDMVMAD 549 Query: 602 DAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVN 660 E + + A++ E + + + L + Q V Sbjct: 550 RPE------QVWNLFCALMDEYVDTLGDLSFKEEDFLNLLQTGFEGATYRQVPSTLDQVI 603 Query: 661 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYL----- 715 I + KV + G D V P ++ L++ + + DD++YL Sbjct: 604 ISETTATQMNDRKVTFIFGATDLVMPNRIQNTM--LLTDMDRELVQGTLDDEKYLSDTAE 661 Query: 716 ---------FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY------ 760 A ++ +++LY SY + ++ R S V ++ Y Sbjct: 662 GRMAAEPFMNYLAFMTPKERLYFSYPVAGVNEDGLRM-SPYVNRIMKQFDLPLYEANGEP 720 Query: 761 -LPGDEALNCDESEARVKAHLT--------CLHTRMPFDPQNYQPGERQSYAREWLPAAS 811 L + L ++ ++L YQ + + R Sbjct: 721 TLEDKKVLKFVATKRTALSNLIGVARQAKGQKQPLPVMWRYIYQKLQEDATYRRLTRKLM 780 Query: 812 QAGKAHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864 AG +S + L E + + + F+ + F + L++ R Sbjct: 781 -AGIEYSNIPERLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDV---- 835 Query: 865 PDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEM 924 F L + + L+ L++ +++ + + + M Sbjct: 836 -----FELSPANTGEFYHMALDKLLKTLKQDKVSITDINKSQF------DAYLQQVLGGM 884 Query: 925 QQLAD-RVIACRQPGQSMEIDL 945 +QL +++ Q + L Sbjct: 885 EQLPQFQILQSSNRMQFILKQL 906 >UniRef50_Q9RNX7 RecC1001 (Fragment) n=71 Tax=Bacteria RepID=Q9RNX7_ECOLX Length = 200 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 196/201 (97%), Positives = 198/201 (98%), Gaps = 1/201 (0%) Query: 555 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ 614 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ Sbjct: 1 GLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQ 60 Query: 615 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD+ +S RFLAGPVNICTLMPMRSIPFKV Sbjct: 61 QWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDK-NVSARFLAGPVNICTLMPMRSIPFKV 119 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 734 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR Sbjct: 120 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR 179 Query: 735 SIQDNSERFPSVLVQELIDYI 755 SIQDNSERFPSVLVQELIDYI Sbjct: 180 SIQDNSERFPSVLVQELIDYI 200 >UniRef50_C8PAK3 ATP-dependent exonuclease subunit B n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PAK3_9LACO Length = 1157 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 71/576 (12%), Positives = 180/576 (31%), Gaps = 69/576 (11%) Query: 374 ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADR 433 + S E+ + + + + +D +V+ ++ Y ++ +F Sbjct: 302 VHLIKADSRYAEINFVAQTIYQQVVFNH-YRYKDFLVLAPNLSEYETYLTPIFSQN---- 356 Query: 434 YLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITE----EG 489 + ++ + HP++ ++ + D F ++D++ +L +L + + Sbjct: 357 NISMFNDLQKQMKFHPLVVMIENIADINDMGFKTQDIITILKTRLLIPEWYTDDIKFIAD 416 Query: 490 LRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLP 549 + L +V I + + + L E + + Sbjct: 417 VDLLENFVLAHNINHQLWKKSFYDFVDNNISH-----------LDQINEKVEKLDKLRQF 465 Query: 550 YDESSGLIAELVGHLASLLMQLNIWRRGLAQER---PLEEWLPVCRDMLNAFFLPDAETE 606 E+ + + L ++ + ++ L + + LE+W + D + Sbjct: 466 IIENIDNLITQLHKLTNVQEAVTLFWNFLLKNKINKKLEKWRNTAIN------NGDLQLA 519 Query: 607 AAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLM 665 I ++ + + + D L + SQ V + + Sbjct: 520 QQPEQIWALLNKLLKDYVLIA--EEFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIG 577 Query: 666 PMRSIPFKVVCLLGMNDGVYPRQLAPLGFD----------LMSQKPKRGDRSRR---DDD 712 +++ FK V ++G + P+ GF ++ + + + ++ D Sbjct: 578 MVQNNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQ 637 Query: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI------DYIGQSHYLPGDEA 766 Y F + L A +YISY ++ N + S+ Q++ +Y+ + Sbjct: 638 TYQFGDVLSLASDGVYISYPIINV-SNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQL 696 Query: 767 LNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPF 826 L+ + ++ L + D N S QA ++ V P Sbjct: 697 LSFITTPQASLGYIVYLKNKTNDDISNLLALT-PSNQALLFDNVIQASSFKNKPVNLTPA 755 Query: 827 TLPE------TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE---------IPDTEPFI 871 E + + L+ F+A+ F L ++ R E+ + Sbjct: 756 LAQELYGNNINISISQLETFYANSYEYFLTYGLHLHKRFENELTNIQSGNYYHETMDRL- 814 Query: 872 LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDL 907 ++ L +++++ L + + G Sbjct: 815 VKYLKQHKLDFAELTKEKISVILANIQDELKTKGSY 850 >UniRef50_Q3AA34 ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Carboxydothermus hydrogenoformans RepID=ADDB_CARHZ Length = 1090 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 84/619 (13%), Positives = 179/619 (28%), Gaps = 111/619 (17%) Query: 346 ENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTP 405 RA +++ + P +++ +P E+E ++ L + Sbjct: 259 RYRASELLHLAQNYYPLLPDPYSGSLENLSLIAAANPLEEMEKAAR-IIRYLAKFKGYKL 317 Query: 406 RDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRF 465 DI+V++ + Y I+ VF LP + A H + +L F Sbjct: 318 SDILVLIPEDGYYISNIKTVFNEYG----LPVYVDKGLAFDHHGLYFLLKGVL----GEF 369 Query: 466 VSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG-QHTW 524 E + L +L ++T + + L ++ G+ G E P + +W Sbjct: 370 NREAAINCLKSGLL----NLTADEVFALENYLLSRGLD-GEKLVLKEAWEDPNSSYWESW 424 Query: 525 RFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPL 584 G ++ + +LP L+ L + R + Sbjct: 425 EKGFGEII----------SFSQILP----------LINTYREFSQSLKQLLLKIGVPRRI 464 Query: 585 EEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQR 644 + Q + ++ E + + + +EL Sbjct: 465 SD--------------------ENGERFWQAFTNLLTEIEEVFGAERLNPTTFAEELLAY 504 Query: 645 LDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPK- 702 L + + V + + V +LG +G +P P + +++ + Sbjct: 505 LAKLSLKTIPKGLDQVRAGGSKRYWTGEARAVIILGAVEGKFPS--PPAAGLIFTEEERA 562 Query: 703 ----------RGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELI 752 R R +D + AL A++++Y+SY S+ P++LV L Sbjct: 563 KLKKVGLELSPLIRQRLKEDNFHVFLALTRARERVYVSYPRVSL-TGESFTPALLVDWLK 621 Query: 753 DYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRM-------------PFDPQNYQPGER 799 L +E +E+ + L F+ E Sbjct: 622 KAFPN---LKSEEGSYGNETTPQALTRLLSREMVKVKKNGELPFIAQGAFNALLLSKPEL 678 Query: 800 QSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 859 + K ++ F + LP +T+ + L+ +++ P++ F + ++ R Sbjct: 679 ITKIARAFATNPGKIKLNAGFKEFLP---SKTLSVSRLETYYSCPLKYFLKYLIKAEER- 734 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWET 919 E F E + + + R G + E Sbjct: 735 --------EIFTPEATEIGALLH---------GAVAEIIKTVREKGQ----KLSTLLAED 773 Query: 920 QCQEMQQLADRVIACRQPG 938 + Q + Sbjct: 774 LKTLVYQAFTKAQQEYGEK 792 >UniRef50_B2GEY3 ATP-dependent helicase/deoxyribonuclease subunit B n=4 Tax=Bacteria RepID=ADDB_LACF3 Length = 1245 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 103/727 (14%), Positives = 210/727 (28%), Gaps = 118/727 (16%) Query: 305 KLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNK 364 + + Y LL+ +D + + SD L V + + Sbjct: 275 RSAKQYQDLLNLATQQVGVDVLDPIVLNQPNQRRVSDAL----VGVEEWMEADARFALPD 330 Query: 365 RPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQA 424 R P D + F + E+ + ++ ++ RD +V+ +D Y ++ Sbjct: 331 RLPAPTDQ-VGFFTAPTRVAELNRVATKIRQLVATGQ-YRYRDFLVVTRHLDGYQTMLEP 388 Query: 425 VFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFD 484 +F +P ++R + P+ +L + + DV+ LL +L Sbjct: 389 IFSR----HQIPVFNDNQRPMATSPLATFTAALFKVLKDYYQEADVMELLKTGLLVPE-- 442 Query: 485 ITEEGLR-----------------YLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 T E L+ + + G + G + R L + Sbjct: 443 -TPEELQQEGRAKRNPNTFMTAVYRTENYCLKFG-KGGRSWFDERPWRLEGEQPESDALK 500 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 587 + + + E L +++ EL L L W Sbjct: 501 RQNAQINWVKNYIKDELAPALADLQTATTGRELATKFYQFL-------LDQGVRHQLYSW 553 Query: 588 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVP-------LSLLRDE 640 ++ + I Q + ++ E + P ++ D Sbjct: 554 AHQAQE------SGQLTQLRDVQQIWQTFGTLLDEYVTILGDQVAPTEQPGQLVAEFADL 607 Query: 641 LAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 + + R +Q V + ++ KV+ ++G D V P A G L+S Sbjct: 608 MNAGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGATDDVMPEVKASEG--LLSD 665 Query: 700 KPKRGDRSRRDDDR--------------YLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 + + +DD+ +L +++S ++LY+S S D+SE S Sbjct: 666 PDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLYMSAPLMS-SDDSELTLS 724 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEAR----------VKAHLTCLHTRMPFDPQNYQ 795 ++ L + Q + + V A + + + + Sbjct: 725 PYLKGLARHFNQWDDQNNAPTTDLPDRPNPRASEDDVWSFVAAPAVTMGNLIEVERLSKD 784 Query: 796 PGERQSYAREWLPAAS--------------QAGKAHSEFVQPLPFTLPETV--------- 832 G + + A + A + G+ PL L + Sbjct: 785 TGRKLTSAWRDVARALTRYDEGLTGRLNDIRDGQYAKNEAVPLQPELAARLYTTNRQGQV 844 Query: 833 ------PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLN 886 + L++F+ +P F + L + R E D +N L Sbjct: 845 TNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDK---------SGTLNHDALA 895 Query: 887 ALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLA 946 V+ E + + G E+ + Q M Q + + + + L Sbjct: 896 FFVQSVIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQ-QEELRELAANNSRVNLQLQ 954 Query: 947 CNGVQIT 953 IT Sbjct: 955 VAKQLIT 961 >UniRef50_B9EAN7 ATP-dependent nuclease subunit B n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EAN7_MACCJ Length = 1118 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 79/568 (13%), Positives = 165/568 (29%), Gaps = 71/568 (12%) Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 + + S ++ I S E + +++ ++ + Sbjct: 264 NMHVSYRFNDELNMLENSFSREVSISHTEHIHLSQHASVPAEAAHIAHKIMDLVRKGE-- 321 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 +DI+V+ D I +PY + H +E SLL + Sbjct: 322 RFKDIVVLYRDESYVKQLIDVC-----RKHQIPYHTDYKELMIHHKAIELIRSLLDAFKT 376 Query: 464 RFVSEDVLALLDVPVLAARFDITEEGL--RYLRQWVNESGIRWGIDDDNVRELELPA--- 518 E + L ++A F E+ L L + E G+ + D + R+L Sbjct: 377 NMRMEHLFRALKTGLIAHEFKREEDLLLIDMLENVMIERGMYYD-DLIHKRKLFYDEKDV 435 Query: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGL 578 Q W LL Y + P+ E ++ G + + + + Sbjct: 436 YEQDQWDA-----LLQYI----DYLLSVIEPFKER--IVNAQSGR--AFASAIYSFMLSI 482 Query: 579 AQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLR 638 + L + + +D + I ++ + + + ++ Sbjct: 483 SLPEYLMQHKDMAKDNGEQYIAL------TFDQILTGLNQVLDDFVLIMDEVTLDYKVMC 536 Query: 639 DELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697 D + + + I L + K V + G+ND + PR + L+ Sbjct: 537 DIIDVGFLALEYNAPPQGLDQIQILNLDLAKVENKKYVFVCGVNDDILPRPMKEDA--LI 594 Query: 698 SQKPKR-----GDRS-------RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPS 745 + + KR GD D+ ++F A+ AQ +YISY ++ PS Sbjct: 595 TDQEKRMMQEIGDIQLAPTTDVLIQDEWFVFYNAVTHAQHSVYISYSLMNMNQ-EAMRPS 653 Query: 746 VLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYARE 805 + L Q H D L+ + + +T H + + + Sbjct: 654 RYLARLER---QLHLEVQDMTLDMNP-----EDCITTYHAGIKHAVSHIEDDTWSDVVAV 705 Query: 806 W---------LPAASQAGKAHSEFVQPLPFTLPETV--PLETLQRFWAHPVRAFFQMRLQ 854 + ++ + +T+ + + F + F L+ Sbjct: 706 YETDPQFEHVFKLRHYRNQSEMLAEHEVSRLYGDTIKASVSRFETFNQCAFKHFANHGLR 765 Query: 855 VNFRTEDSEIPDTEPFILEGLSRYQINQ 882 + R F L + + Sbjct: 766 LKERLPYQFQS----FQLGNIFHDALRH 789 >UniRef50_Q88U40 ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Lactobacillus plantarum RepID=ADDB_LACPL Length = 1201 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 92/661 (13%), Positives = 193/661 (29%), Gaps = 112/661 (16%) Query: 305 KLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNK 364 + GR Y L +++ D+ + + ++ L++ N Sbjct: 256 QSGRLYYR-LYQYARIRQIPVSQDIYAET--PRVAPGLVALDDFWRGQPQAATGYEEPNT 312 Query: 365 RPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED-----PTLTPRDIIVMVADIDSYS 419 + S Q E+ + + AM+ + RD ++M +D+Y Sbjct: 313 N--------VHLFRTDSRQTELAQVGRMIRAMVAKKHADPADDYHYRDFLIMTRHLDAYQ 364 Query: 420 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVL 479 + F +PY + +R+ HP++E +L + ++ DV+ +L +L Sbjct: 365 TMLAPTFHELE----IPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVLKTELL 420 Query: 480 AARFDITEEG-------LRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 + + ++ +SG G + + + Sbjct: 421 MPNINGQPMDRQAYRQAVDLTENFILKSGYH-GQRWVQREDWQYFQ------------LT 467 Query: 533 LGYAMESAQGEWQSVLPYDESSGLIAELVGHL----------ASLLMQLNIWRRGLAQER 582 G A + + +AE + + + L + Sbjct: 468 EGDAGVETDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTD 527 Query: 583 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 642 L W A D A Q + ++ E + + ++ L Sbjct: 528 QLLAWRD------QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQ 581 Query: 643 QRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKP 701 + SQ V I ++S KVV ++G D V P ++ K Sbjct: 582 AGFEGASYSQIPSTLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKE 641 Query: 702 KR--------GDRSRRD-------DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746 GD D D+ L A +SA++ L+ S + Q+ ++ S Sbjct: 642 NLQLTLSSLDGDHYLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQE-TDLNWSN 700 Query: 747 LVQELID--YIGQSHYLPGDEALNCDESEARVKAHLTCLH-------------------- 784 V+ + + + YL + N D T H Sbjct: 701 YVRRIQRQFNLREHTYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGA 760 Query: 785 TRMP------FDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV--PLET 836 P Q + + AR+ + S + + + + Sbjct: 761 PLQPAPVWVWLRQQLTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGHQIYTSISK 820 Query: 837 LQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER 896 L+ F+ + F + L++ R F L S + +L+ L++ +++ Sbjct: 821 LEEFYRNQYAYFLKYGLKLRERDV---------FELSAASTGEFFHAVLDGLIKALRSDQ 871 Query: 897 L 897 + Sbjct: 872 I 872 >UniRef50_B2KE91 ATP-dependent nuclease subunit B-like protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE91_ELUMP Length = 994 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 106/687 (15%), Positives = 222/687 (32%), Gaps = 113/687 (16%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 A + E + ++ + + +I E+ +L L E+ Sbjct: 250 EPAPGVLGAAEDALFNHLISGEAENKNIRIISASGVNGELFAAAKTILE-LTENNGYKFS 308 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 +I + ++ Y + +F +P S SHP+ +LL+L + F Sbjct: 309 EIALCARVLEPYKNNLINIFEQN----KIPLNTSLEFGLLSHPLGIFCFNLLNLAHNGFY 364 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 EDVL+++ A + + R S + G++ Sbjct: 365 REDVLSVIKSQYFAVKNN--------WRALAQNSLVERGLEQWE---------------- 400 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEE 586 + + S L L + P + Sbjct: 401 ------------------------NLINKKDPAYDSSFLSFLTNLGTQLGFFNKPYPWDV 436 Query: 587 WLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD 646 +L F + TE T+ II + ++ +EL + L Sbjct: 437 LSKHAVKILEDFVDANILTEGEKTVFNTIVDTIIQINQFSLVRESAKEKEFLEELNEALK 496 Query: 647 QERISQRFLAG-PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD 705 ++ + + + V +M +R FKVV LLG+N+ V+P+ + L+ K +R Sbjct: 497 EQSVGKVQNSELGVTAGDVMGLRGQHFKVVILLGVNEKVFPQIVREDP--LLRDKFRRTL 554 Query: 706 R-----------SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ----- 749 R R ++++ + L SA++KL++S+ RS ++ PS+ + Sbjct: 555 RDVQGFWIGQKLDRFEEEKLFYYFTLSSAREKLFLSFQ-RSDEEGKAVVPSLYLTEVCRA 613 Query: 750 ---ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTR----MPFDPQNYQPGERQSY 802 EL I ++ + K LT + + + SY Sbjct: 614 AGIELEKNITNISRRELEKYFQTPQEFLNSKEMLTKIFSFPSVEENIKAAGFDWDALASY 673 Query: 803 AREWLPAASQAGKAHSEFVQPLPFTLPETV-----PLETLQRFWAHPVRAFFQMRLQVNF 857 ++++ + + + ++ LQ P+R FF L ++ Sbjct: 674 YNAAKAMSARSSLGAYDGIVNYGDEIFSSLSKKGFSASALQNLAECPMRFFFIKALGLDE 733 Query: 858 RTEDSEIPDTEPFILEGLSRYQINQQL-------------LNALVEQDDAERLFRRFRAA 904 D D ++G ++I Q++ L AL + E F R++ Sbjct: 734 -EADILKRDAIASNIKGTIYHKILQRVYTEIDREISMDSALAALEKIMALEMSFERYKEF 792 Query: 905 GDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEI--------DLACNGVQITGWL 956 G P ++ E +Q+ + + + + D A +++ G++ Sbjct: 793 GLYPV--VWQVITEKMAAALQEFVKKDVESMEGFAPVMFEAAAAAKHDFAGEEIKLHGYI 850 Query: 957 PQVQPDG----LLRWRPSLLSVAQGMQ 979 ++ G ++ ++ S SV + Sbjct: 851 DRIDRRGKEYRIIDYKTSQRSVKDLKK 877 >UniRef50_C7XXL1 ATP-dependent nuclease subunit B n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XXL1_9LACO Length = 1253 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 87/650 (13%), Positives = 193/650 (29%), Gaps = 110/650 (16%) Query: 319 SSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPL----DSSI 374 L F + PD +L + Q ++ + + V +EE+ ++ + + D + Sbjct: 271 QYHRLAEFAEQQPDVMLVDDQ--VVTVNRVSDGLVEVEEWMKAQAQFTIPEQQPRTDQGV 328 Query: 375 TFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRY 434 F + E++ + ++ ++ RD +++ +D Y+ ++ VF + Sbjct: 329 HFFTAPTRVAELQRVAAKIRQLVASGQ-YRYRDFLILTRHLDGYTTMLKPVFDANE---- 383 Query: 435 LPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITE------- 487 +P + R+ +HP++ ++ + D F DVL LL ++ + + Sbjct: 384 VPIFNDNDRSMANHPLVTLLEAIFKIADHYFQLPDVLQLLKTGLVVPQERDEKGRSYYSS 443 Query: 488 ----EGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGE 543 + W + G + Q W F + + Q + Sbjct: 444 QRFMSAVYTTENWCLKYG-----------KTGHAWLEQAEWEFTPH-VDPQILANNEQLK 491 Query: 544 WQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVC--RDMLNAFFLP 601 + + + + + + LA + QL G + L + L R+ L + Sbjct: 492 KREQQQTSQINWVKSVVRNQLAPFIKQLQGASDGQTAAQILYQGLINLGVREQLEQWAKA 551 Query: 602 DA-----ETEAAMTLIEQQWQAIIAEGLGAQYGD-AVPLSLLRDELAQRLDQERISQRFL 655 + + ++ E + + L+ + + SQ Sbjct: 552 ATKRGQMDLAQQPQQVWNTMVNLLDEYVTVLGNEGTFYLTAFAEVIQVGFQTATYSQIPS 611 Query: 656 A-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDR-------- 706 V + +++ KVV ++G D V P G K Sbjct: 612 TMDQVLVSETGIVQTNQRKVVFMIGATDDVMPEIKISEGLLSDPDKQLLSQGLTDGQFLP 671 Query: 707 ----SRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQ----S 758 R D++ L +++A+++LY+S + S + L Y GQ + Sbjct: 672 VSGMQRIDNEAMLNYLGMLNAREQLYLSAPVMGSNEERVTM-SPYLVGLATYFGQWDADN 730 Query: 759 HYLPGDEALNCDESEARVKAHLTCLHT-----------------RMPFDPQNYQPGERQS 801 + L D + K + Sbjct: 731 NQLRNDLPFAPEPRADFAKLEPFVSAPAATLTNYVQVERQAKNAGQTVSAGWRNISREMN 790 Query: 802 YARE-WLPAASQAGKAHSEFVQPLPFTLPETV---------------------------- 832 + R WL ++ ++ + L + Sbjct: 791 HERLGWLKSSLNYQNQTTKLSPEMAAQLYGHLDPDVLKQATAAGDNFDWTTVSDDQRHNT 850 Query: 833 ---PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI-PDTEPFILEGLSRY 878 + LQ F+ +P F + L + R E ++ F + L + Sbjct: 851 LATSISQLQTFYRNPYEYFLKFGLDLQKREELEITNANSGTFYHDSLEAF 900 >UniRef50_C2BHK2 Putative uncharacterized protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BHK2_9FIRM Length = 1115 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 87/591 (14%), Positives = 209/591 (35%), Gaps = 70/591 (11%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 + V ++ + P + +I + S + EV + + +++ +P + + Sbjct: 267 PKTVDLDHLRINFETYRPAPFEKNPENIKIYESISTKSEVTNMALLINKIIKTNPDIRYK 326 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 D+ V + D D Y + F +P + RR + +++ F++LL L + F Sbjct: 327 DMAVYLTDPDQYENELIKTFSRYE----IPIFLDKRRKMADNHIIKTFLALLRLKVNNFR 382 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 ED+ +L+ ++ I+++ L ++ I+ + +++ + Sbjct: 383 QEDLFYILNSKLI----GISDKDANALINFLTYRKIKGSMFENDKYFAMDEDFYEKNLVN 438 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEE 586 + + + YD + + A+++ HL L + N+ + LA + Sbjct: 439 DPKK---------DEKIAKKREEYDHVNLVRAKIL-HLTKGLDKKNMTVKDLATKIFKMI 488 Query: 587 WLPVCRDMLNAFFL-----PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 + +NAF D + I ++ AI+ + + ++PLS + + Sbjct: 489 ADSDIKKSINAFQAKLLENADLDDYKENEQIWDEFVAILDQLVLLMGDRSLPLSRVVTIV 548 Query: 642 AQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQL------APLGF 694 +I + + + R K+ LLGM+D +P Q +P Sbjct: 549 EAVTRDIQIGLIPPSKDHLIVTDFARDRVSNKKINILLGMDDAYFPSQKAKDYLISPDEM 608 Query: 695 DLMSQ---KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 + + + K + R + + + KL SY S ++ + S++++++ Sbjct: 609 EELEKAKIDLKLYAKDRDRAELLSLYKIISR-SDKLIFSY-ALSDKEGKDLNESLVIRDI 666 Query: 752 IDYIGQSH--YLPGDEALNCDESEARVKAH-LTCLHTRMPFDPQNYQPGERQSYAREWLP 808 + L A + + +K + L L+ + + + + E+L Sbjct: 667 RKIFPKLKKNILLDPRAEDAIFARESLKKYTLAVLNKLANKEKITDKDKQIATAFMEYLR 726 Query: 809 AASQAGKAH------------SEFVQPLPFTLPETV------PLETLQRFWAHPVRAFFQ 850 + + + L L + + + ++ + A P + F Sbjct: 727 ENQEKDENKLTYDKVKKGLFYTNDKLALADELRKVLYKKHAYSVSEIETYSACPYKHFIA 786 Query: 851 MRLQVNFRTEDSEIPDTEP-FILEGLSRYQINQ---QLLNALVEQDDAERL 897 L+ PD E F ++ L I + L+ L++ D + + Sbjct: 787 YGLR----------PDVEKEFDVDALDIGNIVHKSFEDLSRLIKDMDLDEV 827 >UniRef50_Q5M2T6 ATP-dependent helicase/deoxyribonuclease subunit B n=33 Tax=Streptococcus RepID=ADDB_STRT2 Length = 1106 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 87/681 (12%), Positives = 202/681 (29%), Gaps = 110/681 (16%) Query: 348 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRD 407 R + + ++ + ++ + + EV + + +L + +D Sbjct: 270 RISRLLESRHDFSTVDETVTEQDKHALKVWEVVNQKEEVAQVAKSIRQLLADGK--RYKD 327 Query: 408 IIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVS 467 I+V++ D +SY + +F +PY + SHP++E SL + + + Sbjct: 328 ILVLLGDEESYKLHVGQIFRKFD----IPYYFGKEESMSSHPLVEFVDSLERIKRYNYRA 383 Query: 468 EDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFG 527 ED+L L+ + +E L +VN + I+ G Sbjct: 384 EDLLNLVKSGLYG---GFAQEDLDLFEYYVNFADIK-----------------------G 417 Query: 528 LTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLE-E 586 + L + S D+ + L ++L+ L L L ++ + E Sbjct: 418 RHKFLSDFTANSRDKYN-----LDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLE 472 Query: 587 WLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD 646 + + M + + + + I+ + +++ + L + Sbjct: 473 AVQLPSQMFELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSILRSGML 532 Query: 647 QERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD 705 VN+ ++ V LGM +P+ L+S + + Sbjct: 533 ACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKS--LLSDEERSRI 590 Query: 706 RSRRDDDRYL--------------FLEALISAQQKLYISYIGRSIQDNSERFPSVLVQEL 751 D+ R L + +A ++L +S + + SV ++EL Sbjct: 591 NEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDM--SVYLKEL 648 Query: 752 IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAAS 811 +D L + ++ + L T + + + + W A Sbjct: 649 LDL---GIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVAVR 705 Query: 812 QAGKAHSEFVQPLPF---------------------TLPETVPLETLQRFWAHPVRAFFQ 850 K + +P P + L F+ + F + Sbjct: 706 YLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYFLR 765 Query: 851 MRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAA------ 904 L++ + E + ++ ++ +E + A Sbjct: 766 YVLEL---------EELESIHPDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQ 816 Query: 905 --------GDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLAC-NGVQITGW 955 + F E + + A + + ++ DL N ++ITG Sbjct: 817 DQPFEILYTEDQESRFSRQILEDIARSTASVLRDNAAVKVECEEVKFDLLLANSIKITGI 876 Query: 956 LPQVQP-----DGLLRWRPSL 971 + +V G++ ++ Sbjct: 877 IDRVDRLTDGALGVVDYKTGK 897 >UniRef50_D1PLS4 Putative ATP-dependent nuclease subunit B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS4_9FIRM Length = 1094 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 74/591 (12%), Positives = 167/591 (28%), Gaps = 87/591 (14%) Query: 402 TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461 + + V+ D Y ++ F + +P + ++ A ++L L Sbjct: 309 GMPYHRMAVICRDAAQYLGPLRYEF----RLQNIPLFCDEATTPENTAPARAVHAVLDLA 364 Query: 462 DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521 S S VL LL ++ ++ E L + W + + Sbjct: 365 RSGVSSRTVLRLLKTGLV----NLPERQQTALENYA----YTWSLKAAD----------- 405 Query: 522 HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL---------ASLLMQLN 572 WR TR GYA + ++ + + + E + A+L Q+ Sbjct: 406 --WRAPFTRSAAGYADVERAEDVRTREEAEAARVFLMERIQKFLPRVKNAGAAALTKQVY 463 Query: 573 IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAV 632 ++ + L E L R + ++ + + + Sbjct: 464 LFLQSLGAEDTLNALAETLRG------QGRMPEADEVLREWNVVMGLLNQLAQLLGEEEL 517 Query: 633 PLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP 691 P + + L + + V + T MR V ++G+ +G +P+ Sbjct: 518 PPADYAELFTLLLRTTDMGHIPQSLDSVILTTAGRMRLPETDAVFVVGLLEGEFPKTPGD 577 Query: 692 LGFDLMSQKP---KRGD------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742 G + + ++G ++ + F +A+ +A+ L++S+ G + ++ Sbjct: 578 QGLLTHADRDAMIRQGAELPDCFENKVLREGVCFYKAMTAARSFLWLSWPGAAHAEDDT- 636 Query: 743 FPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRM---------PFDPQN 793 S + + + P L + A + + Sbjct: 637 PASSALAPVRRLLQVPFAGPSTAELGASPAAALDILGVISQQPGREGEGEALRAALEDAE 696 Query: 794 YQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRL 853 P Y V +++ P F Q L Sbjct: 697 GTPQSAPGYEAVRRAREKAEPAVRDTGALEKLLGPGLRVSPTRFEKYQTCPFGYFMQFVL 756 Query: 854 QVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFG 913 + R + P+ + +L + + AF Sbjct: 757 RAAPRQKAELAPNI---------SGTLTHWVLENALRRQG----------------AAFK 791 Query: 914 EIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQ--ITGWLPQVQPD 962 ++ E +++L PG ++ + ++ + G L +Q D Sbjct: 792 DLTAEELQALVEELVAEYTQANLPGITVRMQYLIERIRRNLVGLLGFIQRD 842 >UniRef50_A5VHK1 ATP-dependent helicase/deoxyribonuclease subunit B n=10 Tax=Lactobacillus RepID=ADDB_LACRD Length = 1260 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 95/691 (13%), Positives = 196/691 (28%), Gaps = 127/691 (18%) Query: 344 ELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL 403 EL+ +R +I F + E+ + ++ ++ Sbjct: 308 ELQQVDSYFKRYASEPIGPGEREELLDPQNIQFMTTTNRMTELNNVATQIRQLVASGK-Y 366 Query: 404 TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS 463 RD +++ +D Y I+ VF + +P R +HP++ +LL LP Sbjct: 367 RYRDFLILSRHLDGYQTMIEPVFAA----HNIPVFNDHERLMDNHPLVTLLTTLLELPQR 422 Query: 464 RFVSEDVLALLDVPVLAARFDITE--------EGLRYLRQWVNESGIR----WGID--DD 509 + + D++ LL +L R + + W + I W + + Sbjct: 423 GYRTADIIQLLKTWLLVPRTGTGDLMGLSDFQAAVFTTENWCLKQAIEGKNAWTTNDPEK 482 Query: 510 NVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESS-GLIAELVGHLASLL 568 + + P T ++ +R+ + + + + L Sbjct: 483 IKQLWQAPGTNLTDPKYEQSRL---EKLNDQLALVKDFVANHLLPVFDQFKQAQTGQELA 539 Query: 569 MQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQY 628 L + + L W D + + + I+ E + Sbjct: 540 TALYQFLAAMGVTDRLYAWQQYQST-------RDLDLARQPQQVWTTFCQILQEYVEILG 592 Query: 629 GDAVP------LSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMN 681 + L+ + L + SQ V + ++S KVV ++G Sbjct: 593 QQELRDGTNEVLADFSELLQAGFAAAQYSQIPATLDQVVVSETGIVQSENRKVVFMIGST 652 Query: 682 DGVYPRQLAPLGF------DLMSQKPKRG-------DRSRRDDDRYLFLEALISAQQKLY 728 D V P D++S + D+ ++ ++A+++L Sbjct: 653 DDVMPEMQESDSLLTDQDKDILSAYLDEDFQYLPGTAIDQLIDEPFVHYTGFMNAKEQLI 712 Query: 729 ISYIGRSIQDNSERFPSVLVQELIDYIGQSHYL--------PGDEALNCDESEARVKAHL 780 S +S D+ E S + ++ Y GQ D A++ + L Sbjct: 713 FS-APQSDSDDKELSISPYMHDMARYFGQPVREYPLATSKAGQDNAIDFVSAPLATINRL 771 Query: 781 TCLHT-----------RMPFDPQNYQ--PGERQSYAREWLPAASQAGKAH---------- 817 + R P P +Q A++W +A +A Sbjct: 772 VEVSRQIRDEQGVGIDRQPVMPVGWQTVAESLVKLAKQWQQSADAKVQAEGISLGQRLSL 831 Query: 818 -------SEFVQPLPFTLPETV----------------PLETLQRFWAHPVRAFFQMRLQ 854 + L L + + + LQ F+ + F + L+ Sbjct: 832 VAAGFHYQNKIDSLGNKLAQALYLRAAPDDERGRVLYASISQLQDFYINQYEYFLKYGLR 891 Query: 855 VNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE 914 + R E + D + + V L +F + Sbjct: 892 LQKRDELTLSNDRI---------GTFFHKAMETFVTTIRENNL-------------SFAD 929 Query: 915 IFWETQCQEMQQLADRVIACRQPGQSMEIDL 945 + + + QL D + Q Q + L Sbjct: 930 LAHKDNQMQRDQLIDHALVTAQENQPTLLRL 960 >UniRef50_A6CDV2 ATP-dependent deoxyribonuclease subunit B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDV2_9PLAN Length = 1125 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 85/615 (13%), Positives = 191/615 (31%), Gaps = 85/615 (13%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 + E + P I + E+EVL + +L + + P Sbjct: 278 PASSRSQICEALFDNPRGIKPSPSAEQIKVLAVAGQRNELEVLAVEIKQLLLQ--GVPPE 335 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 +I ++ Y I +A +PY + + PV+ A + L + + Sbjct: 336 EISLVFRSTLEYGDLIHETLSAAG----IPYFLGQEQEFSRFPVIRAIFTFLQIELDNWS 391 Query: 467 SEDVLALLDVPVLAARFD--ITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTW 524 + ++++LD + + + +R L + + E I G Sbjct: 392 FDSLMSILDSNYFSPDWPEYKSGTAVRCLSRILRELKIDSGK------------------ 433 Query: 525 RFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPL 584 L + Y + P ++ L E L +L+ + L + Sbjct: 434 TDILNALEKEYRKANELCTRYPDQPKRQAILLEMESA---YHLAKRLSSETQKLRGKELF 490 Query: 585 EEWLPVCRDMLNAFFLP---------DAETEAAMTLIEQQWQAIIAEGLGA--------- 626 W+ + + N F LP + L+ +++Q ++ + Sbjct: 491 VTWIEILISLANEFGLPKAWSSEEPGTEALDQRDQLVWERFQKLLFHAVAEVDQIEQFHQ 550 Query: 627 QYGDAVPLSLLRDELAQRLDQERIS-QRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 + + L R L L+Q+ ++ Q G V + +R++ + + G+++ + Sbjct: 551 REAAPLDLLTFRSLLLDLLEQQTLALQTEETGRVQVLDASQLRNLSVPYLLVGGLSEASF 610 Query: 686 PRQLAPLGFDLMSQKPKRGD--------RSRRDDDRYLFLEALISAQQKLYISYIGRSIQ 737 PR + + + +++ ++ LF E + ++L +SY S Sbjct: 611 PRSHREDCLYSEKDRGELNEYGLSLKRHANQQQEEMLLFYEVMTRFSKRLILSYPAIS-S 669 Query: 738 DNSERFPSVLVQELIDYIGQ-----------SHYLPGDEALNCDESEARVKAHLTCLHT- 785 F S + L+D + ++A++ + L Sbjct: 670 TGQPLFASPYLTALMDLFEPGALSVRQVGELNPLPRREQAMSARDLRILAIDELKRDQPG 729 Query: 786 --RMPFDPQNYQPGERQSYAREWLPAASQAGKAHSE---------FVQPLPFTLPE--TV 832 + +Q R + + A + +E Q + P+ Sbjct: 730 LFLQILEEPGFQATARNILSAVEMAVARFEQEGFTEYEGIMVSAATRQAIHERFPQDYEF 789 Query: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 L+ + A P + F Q L + + F+ G+ + I +L L + Sbjct: 790 STTQLELYLACPFQFFVQNVLGIEVPEPPELRTN---FLQRGIHVHSILTRLYEQLGSEG 846 Query: 893 DAERLFRRFRAAGDL 907 D +L+ + Sbjct: 847 DNTQLYEADQVEPLF 861 >UniRef50_A4W0M6 ATP-dependent helicase/deoxyribonuclease subunit B n=6 Tax=Streptococcus suis RepID=ADDB_STRS2 Length = 1088 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 74/576 (12%), Positives = 166/576 (28%), Gaps = 90/576 (15%) Query: 367 LDPLDSS-ITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAV 425 L P D I + + EVE + + + + +DI++++ D+DSY I + Sbjct: 287 LTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ--GARYKDILLLLGDVDSYKLQIGKI 344 Query: 426 FGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDI 485 F +PY HP++ SL L RF +ED+L LL + A I Sbjct: 345 FDKYD----IPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYA---SI 397 Query: 486 TEEGLRYLRQWVN------ESGIRWGIDDDNVRELELPATGQHTWRFGLTRM--LLGYAM 537 +++ L ++ ++ + + + + + LT + L M Sbjct: 398 SQKELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIM 457 Query: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 E +++ L+ + L ++ + +E+ ++ Sbjct: 458 EPLNQLFKAGPQ------SGTALLEKFMAFLEAID-------LPKNMEKMSRNLSEV--- 501 Query: 598 FFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA- 656 + + + + ++ + + + L + Sbjct: 502 -------EQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATV 554 Query: 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF---------DLMSQKPKRGDRS 707 VN+ + + K V +GM +P+ +L+S R D Sbjct: 555 DVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLV 614 Query: 708 RRD---DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGD 764 R+ + + L SA ++L IS + P I + + + Sbjct: 615 SRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSP------YIKILQKMGLKSEE 668 Query: 765 EALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGK--------- 815 S + + + L + + + + E + W K Sbjct: 669 RGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVRHLKKKLESQSIEI 728 Query: 816 ------------AHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSE 863 + P P + +L F+ + F + L++ Sbjct: 729 PTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLR------- 781 Query: 864 IPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFR 899 + E ++ +V + Sbjct: 782 --EQESIHPTAFQHGLFLHRIFERVVMDQSELDFDQ 815 >UniRef50_C7RGF8 ATP-dependent nuclease subunit B-like protein n=2 Tax=Anaerococcus RepID=C7RGF8_ANAPD Length = 1121 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 67/582 (11%), Positives = 176/582 (30%), Gaps = 61/582 (10%) Query: 354 NIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVA 413 ++ N ++I F S + EVE ++ L ++ +D+ + ++ Sbjct: 275 HLARNFERFNPLKFGGSPNNIRFLENPSTKTEVENTAR-IINYLVKEKGYRYKDLAIYIS 333 Query: 414 DIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLAL 473 D Y I VF LP + R + +++ F+++L L F S+D+ Sbjct: 334 SEDEYKNEIIKVFNRYD----LPIFMDSDRKLIDNHIVKTFLAILRLVIYNFNSQDLSYF 389 Query: 474 LDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTR--- 530 L + + + E+ + L ++ I+ + ++ + ++ R Sbjct: 390 LRSGLFSFSVNFEEKTI-ILENYIKNRKIKGKMFLEDKYFVYDEDFYKNLCENDPKREEK 448 Query: 531 -MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLP 589 Y + +L + E L + + R + + Sbjct: 449 LGAKTYEYQVINELRDRILDLLNPLLELKE--EKTRDLCIGIFNIIDDKDIRRGIASFQK 506 Query: 590 VCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQER 649 + ++ + + ++ I+ E + + L + + Sbjct: 507 ILKE------SGRLDEYKENDQVWDKFVEILEEIVDLMGERSSSLRKVYSLIEATCKDIN 560 Query: 650 ISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP---------LGFDLMSQ 699 + + + I + R V +LG+ND +P + Sbjct: 561 VGIIPPSKDHIEITSFARARIADRGVNFILGLNDVFFPSTNREDLIVGKGEKDKLRALDL 620 Query: 700 KPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759 K D + ++ +F + + KL++SY + + + S+++ +++ Sbjct: 621 DLKVFDEDFEEREKLVFYKLITI-SDKLFLSYSLAN-RKSEAINKSIILNSIMNIFSDRE 678 Query: 760 YLP-----------GDEALNCDESEARVKAHLTCLHTRMPFDP------QNYQPGERQSY 802 E + E R + + D + + +++ Sbjct: 679 GKTYGMVYGNDLGLSIEKFSYKTMEVRALRSIRQMMRNENVDENDREIARAFIKYLKEND 738 Query: 803 AREWLPAASQAGKAHSEFVQPLPFTL--PETVPLETLQRFWAHPVRAFFQMRLQVNFRTE 860 + E + + L +L + ++ + P + F L+ Sbjct: 739 SYELIEKGLNFTNDKKNLREDLAGSLYKKNHFNVSEIESYSRCPYKYFVNYGLR------ 792 Query: 861 DSEIPDTEPFILEGLSRYQINQQLLNAL---VEQDDAERLFR 899 E + ++ + I +L + + + + E L Sbjct: 793 ---PNIDESYEVDHMEVGNIVHKLFEDISRNLSEKNIEELKA 831 >UniRef50_A2RH76 ATP-dependent helicase/deoxyribonuclease subunit B n=5 Tax=Lactococcus lactis RepID=ADDB_LACLM Length = 1099 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 89/684 (13%), Positives = 210/684 (30%), Gaps = 116/684 (16%) Query: 341 DILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED 400 IL+L++R V E D K + + E+E + + + + Sbjct: 270 RILDLDSRFVITDEKIELKAEDEKY--------FRIWEAENQKVEIERVAKEIRQKIIQ- 320 Query: 401 PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSL 460 +D V+V D +Y ++ VF +P+ + + HP++ F SL ++ Sbjct: 321 -GAFFKDFTVLVGDPAAYEITLKEVFDLYE----IPFFYAQEESMSQHPLVIFFESLFAI 375 Query: 461 PDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATG 520 + + ++DV+ LL + ++ EE + Y +V + I Sbjct: 376 KKNNYRTDDVVNLLKSK-VYTDANLDEEVIDYFEYYVQKYKIS--------------GRK 420 Query: 521 QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQ 580 + T F + E+ + L+ E+ L L ++ + Sbjct: 421 KFTEEF-------------IESEFSQIE-------LVNEMREKLLGSESPLQVFLGN-NR 459 Query: 581 ERPLEEWLPVCRDMLNA----------FFLPDAETEAA----MTLIEQQWQAIIAEGLGA 626 ++ ++W+ + +L F + + E + Q + + E L Sbjct: 460 KKTGKKWVSDLQGLLENGNVMTNMNAYFSAAELQNEHQMADKHEQVWQMLISTLNEFLAV 519 Query: 627 QYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 + + D L L + Q VN+ + K + +G++ + Sbjct: 520 FSDEKLKSVEFLDILLAGLKNAKYRQIPANVDVVNVKDYELVEPKTNKYIYAIGLSQTNF 579 Query: 686 PRQLAPLGFDLMSQKPKRGDRSRRDDDRYL--------------FLEALISAQQKLYISY 731 PR L+S + + D+++++ L + SA++ L +S Sbjct: 580 PRIKKNS--TLLSDEERLEINQTTDENQFIEQLNVANYQKNQFTVLSLINSAKESLVLSM 637 Query: 732 IGRSIQDNSERFP--SVLVQE----LIDYIGQSHYLPGDEALNCDES--------EARVK 777 + E P + +++ ++ I + E + S E + Sbjct: 638 PQIMANEQGEFSPVFQLFLKDADEKILQKIQGVNLFESLEHIGNSRSVIAMIGQIERELV 697 Query: 778 AHLTCLHTRMPFDPQNYQ--PGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV--P 833 + F ++ + + L A + L + + Sbjct: 698 ESEETSEDKRVFWSSIFRILVKSNADFQKILLDLAKDID-TVNLAPDTLEQIYGDKIYAS 756 Query: 834 LETLQRFWAHPVRAFFQMRLQVN-FRTEDSEIPDTEPFILEGLSR----YQINQQLLNAL 888 + + +RF+ + F + L + F D F E + ++ + + Sbjct: 757 VSSFERFYNCEYQYFLENTLSLETFENIDINSKIVGNFFHEVFEKVMKETDLSAENFDEK 816 Query: 889 VEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQE----------MQQLADRVIACRQPG 938 + E R F E ++ +L + Sbjct: 817 LTLVLQEVDKNYSRYFTQDATARFTWSNLEEIVRQTATVLKATVSTDELKTLLTESSFGL 876 Query: 939 QSMEI-DLACNGVQITGWLPQVQP 961 E+ + + + + + G + ++ Sbjct: 877 PKSELGNFSVDDIYLRGRIDRLDQ 900 >UniRef50_C8SXN2 Exodeoxyribonuclease subunit V gamma (Fragment) n=4 Tax=Enterobacteriaceae RepID=C8SXN2_KLEPR Length = 170 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 120/167 (71%), Positives = 141/167 (84%) Query: 956 LPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQ 1015 L QVQPDGLLRWRPSLLSV+QGMQLWLEHLVYCASGG GESRLF+RK+GEWRFP LA + Sbjct: 1 LQQVQPDGLLRWRPSLLSVSQGMQLWLEHLVYCASGGTGESRLFVRKEGEWRFPALAPAE 60 Query: 1016 ALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAY 1075 A YL++L++GY GMS PLL+LPESGGAWLK CYDA+ D +L D+ T QKAR+KFLQ Y Sbjct: 61 AQAYLNELVDGYLLGMSQPLLLLPESGGAWLKACYDAEKDVILMDEETQQKARSKFLQTY 120 Query: 1076 EGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS 1122 EGNM+V GEG DIWYQRLWR L P E I+ Q+QR+LLPL+R+++S Sbjct: 121 EGNMVVSGEGADIWYQRLWRSLEPAHYEEIIAQTQRYLLPLYRYHRS 167 >UniRef50_Q1GAB0 ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Lactobacillus delbrueckii RepID=ADDB_LACDA Length = 1179 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 73/603 (12%), Positives = 167/603 (27%), Gaps = 84/603 (13%) Query: 340 SDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE 399 D + + + + P +++ S E + + + Sbjct: 273 HDFAWEREKIASPASPARDLNQAWQGQGQPDLNNLQLVKADSRYAEAYFVARTIYDEVAL 332 Query: 400 DPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLS 459 RD +V+ ++ Y ++ + +P+ ++ + HP++ +L Sbjct: 333 -KGCQYRDFLVLAPNLQEYETYLAPILRQN----QIPFFDDLQQQMKYHPLVLLLENLGK 387 Query: 460 LPDSRFVSEDVLALLDVPVLAARFDITEE----------GLRYLRQWVNESGIRWGIDDD 509 L + +L+++ +L + + + + L + GI++ + Sbjct: 388 LLQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDIDQLENFALAHGIKYSLWQK 447 Query: 510 NVREL------ELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGH 563 +++ L W L ++ + + + Sbjct: 448 PLKDFTKAQVIALDQEQYQKWLDRLDKL--------RDFFVSKISRLARQLKSEKDSMTA 499 Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEG 623 + + LE W L A D + +++ + Sbjct: 500 VKLFFD----FLVKNGVSARLEAWR------LKASESGDLQQAQQPEQCWNLLLSLLKDY 549 Query: 624 LGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMND 682 L + + L Q + + V + +++ +K V ++G + Sbjct: 550 LLVN-PENFAWADFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAAN 608 Query: 683 GVYPRQLAPLGF----------DLMSQKPKRGDRS--RRDDDRYLFLEALISAQQKLYIS 730 G P+ F D Q D R D Y F AL A ++YIS Sbjct: 609 GSLPQINDQPNFLTTENLASLADFFDQDAYLEDSQQLRNLDQEYQFGNALALASDRVYIS 668 Query: 731 YIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFD 790 Y + +N PS+ + L+ + Y D ++ L T Sbjct: 669 YPVIN-SNNDLLDPSIYYKRLLKLVNGREYRQRDLPDIAEKDRTEFARQLLLFLTSPRAS 727 Query: 791 PQNYQPGERQSYAREWLPAA--------------SQAGKAHSEFVQPLPFTLPETV---- 832 E S + G A+ Q + L E + Sbjct: 728 LGYLAYAEENSAQSPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKD 787 Query: 833 ---PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 + L+ ++ + F L++ R E+ L + + L+ Sbjct: 788 LLSSVSQLESYYQNSFEYFLNYGLRLRPRAENE---------LNAIQSGNYFHRTFELLL 838 Query: 890 EQD 892 ++ Sbjct: 839 KEM 841 >UniRef50_A3CVM8 ATP-dependent nuclease subunit B-like protein n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CVM8_METMJ Length = 1049 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 88/533 (16%), Positives = 168/533 (31%), Gaps = 63/533 (11%) Query: 385 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 444 EV + + ++ + P +I V D S P+++ VF +PYA SD RA Sbjct: 295 EVRAIAQEIRDLVAA--GVRPDEIAVAFPDFASALPYVEEVFPDFG----VPYAASDGRA 348 Query: 445 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 504 + P++ A + + +P + EDV+AL P L + E+ I Sbjct: 349 LSASPLVRALLDVAMVPARGYRREDVVALATSPYLPFTGGCELDIFSR------EARITA 402 Query: 505 G-IDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGH 563 G D+ + + E I Sbjct: 403 GNWDERLAALARAAGEER----------------GRPDTPESAKSRLAEKVAAIESARKT 446 Query: 564 LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAI---- 619 + L L+ L + L + R +L + P + L+E + + + Sbjct: 447 VRELFADLSA----LEATKTLAGHIAAYRSVLERWQAPAMPEDGDPDLLEDEARNLGGFS 502 Query: 620 -----IAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKV 674 + + + L+ LAQ R +R G V + + + + Sbjct: 503 GILAALERLARLLPDEKMSLAEFSSLLAQVAAGTRTGRRRSNGGVRVVGVREVAHLAVPY 562 Query: 675 VCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRD---DDRYLFLEALISAQQKLYISY 731 + + G+ +G PR L F ++ + G RSR D ++RY F AL+SA+ ++Y+SY Sbjct: 563 LFVGGLVEGTMPRLTTRLPFTTDAETRRLGTRSREDILREERYYFTAALLSARTRVYLSY 622 Query: 732 IGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDP 791 S V + + + D + + R A L + Sbjct: 623 PAAEGAT--PLVHSGFVDAVREAFSPETWGSNDFPDSGLAAARRAGALLARGEFPVGMPC 680 Query: 792 QNYQPGERQSYAREWLPAASQAGKAHS---EFVQPLPFTLPET------VPLETLQRFWA 842 + E + + + + L E L+ + Sbjct: 681 PIPVREAVRRLNIENYHRKAGYDSPYDGMLDDDPAILAALAERFGEGAVFSPTALETYAD 740 Query: 843 HPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE 895 P R + + L + +P+ +P L R + ++ + Sbjct: 741 CPFRFYLERVLGLAP------LPEADP-DLTAQERGSLVHRIAYRFYSGWTCD 786 >UniRef50_B7GQ32 ATP-dependent nuclease subunit B-like protein n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQ32_BIFLI Length = 1101 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 83/617 (13%), Positives = 173/617 (28%), Gaps = 124/617 (20%) Query: 367 LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF 426 + +S + EV + + ++P ++ D++V D+ SY I + F Sbjct: 261 IFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASEF 320 Query: 427 GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486 + +P I+ HP +A + LL + +L +L + + ++T Sbjct: 321 ----TYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLNLT 376 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS 546 + + +N + W Sbjct: 377 PTAIDDIENQLNS--------------------------------------NNPATVWID 398 Query: 547 VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM---LNAFFLPDA 603 HL + L + + RP M L + Sbjct: 399 ---------TDIPFAAHLQK-IRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTIE 448 Query: 604 ETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICT 663 + T+I + ++ + + + V + LA L + I R ++ Sbjct: 449 GSAPVWTVIMNAFDDMVQQLGNDYFAEYVGI--FARNLASTLAAQSIDSRPVSASAVDVL 506 Query: 664 LMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRS---------------- 707 M P++ V +LG ++ P G L+ + Sbjct: 507 PMSSPLHPYRYVIVLGCSESQLPAIPHETG--LLDDGERLDLSQFLTSQGKTLEAWNVLS 564 Query: 708 -----RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLP 762 R + F + SA Q+L ++Y N+ + S + + Sbjct: 565 GTVERRSGQEPLWFNGVVASATQQLSMTYPKS--LRNAAQACSPYISQW----------- 611 Query: 763 GDEALNCDESEARVKAHLTCLHTRM-PFDPQN-YQPGERQSYAREWLPAASQAGKAHSEF 820 + E K + + T P D + Y+ R Y + Sbjct: 612 ETGTSDTSEIIGASKRAVPTVETEYRPLDRELAYRLFTRPDYVHRVYRTHGADPSISTRV 671 Query: 821 VQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQI 880 + ++ ++ +P F + L+VN + LEG + + Sbjct: 672 FNA---------SVSAIETYYRNPYEYFLKYGLKVNVANAFAFDA-----ALEGTFYHAV 717 Query: 881 NQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQ---- 936 + +NA +E+ E R LP + + + C Q Sbjct: 718 LEHAVNAWIERHKNE------RDLNGLPPQPTAP----DMQELIADYSRLDRGCNQWTVL 767 Query: 937 -PGQSMEIDLACNGVQI 952 ME+ + N +++ Sbjct: 768 NEDPRMEVLRSSNRMRM 784 >UniRef50_C2KVH9 ATP-dependent deoxyribonuclease subunit B n=1 Tax=Oribacterium sinus F0268 RepID=C2KVH9_9FIRM Length = 1162 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 93/654 (14%), Positives = 191/654 (29%), Gaps = 113/654 (17%) Query: 367 LDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVF 426 L I+ + REVE + L E+ ++I V++ D++ Y F Sbjct: 344 YPSLPHGISVIEAANISREVEEACSHI-RYLVEERGYRYQEIGVVLPDVELYRDA----F 398 Query: 427 GSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT 486 +P + + P + S L + + + + L R Sbjct: 399 FQQGRKFAIPLFLEEDIKLFDSPFSKVLRSALEVMEKGLLYDSFFRYLR--AFPYRGMEE 456 Query: 487 EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQS 546 E+ + L G++ + + ++ A+ + Sbjct: 457 EDRIDALENEARAKGLKG--------------------KSAFRSLFQEESLLEAEALFS- 495 Query: 547 VLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETE 606 +E+ G + L + L + L LEE ++ Sbjct: 496 --LLEENEGSHS-----LKERIESLESFTEKLMALFQLEEEAIFLKN------EGMDSLS 542 Query: 607 AAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLM 665 ++ Q Q ++++ V L E++ Q V + L Sbjct: 543 QSLERSVSQIQLLLSKMKEGLGEIPVNKKEFSAFFDMALSLEKLRQIPATNDQVLVGDLT 602 Query: 666 PMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSR------------RDDDR 713 R K LG N G+ P L +++ K R + Sbjct: 603 RSRFHNPKAFLFLGFNAGLIPLPPKKKS--LFTEEEKSFLRQEHCTLSPLAWEESYIQEF 660 Query: 714 YLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESE 773 YL A +S +++LY+SY R + S ++QE + + + + +S Sbjct: 661 YL-YHAFLSPKEELYLSYPLRIPKGRGGI--SPILQEALRLFPKLKIRKLEREIQEMQSF 717 Query: 774 ARVKAHLTCLHT---------------RMPFDPQNYQPGERQSYAREWLPAASQAGKAHS 818 ++ K L+ F +++Q E+ + +A Sbjct: 718 SQAKDSLSKELPKLCKKEVLFRSEEEVLPYFHLESFQLLHSLWQKEEYKKDLEKLLEAIF 777 Query: 819 EFVQPLPFTLP-------ETV--PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEP 869 + LP + E + + L+ F + L + R E + + Sbjct: 778 WENRHLPLSKELSKGLYGEKIRGSVSRLEGLNRCAFFHFLRYGLHLQERKE----AEIQA 833 Query: 870 FILEGLSRYQI---------------------NQQLLNALVEQDDAERLFRRFRAAGDLP 908 F L L +++ Q+ LN + + + + F F G Sbjct: 834 FDLGNL-YHKLVESFFKKLKEEKLKGEVLSEHFQEYLNFAIAESEQDPEFAPFLEGGRNQ 892 Query: 909 YGAFGEIFWETQCQEMQQLADRVIACRQPGQSME--IDLACNGVQITGWLPQVQ 960 Y F F E + L ++ +++E + + G + +V Sbjct: 893 Y--FLHKFKENAKTILWVLERQLSGGDFQVEALERDFHYESDTLSFRGRVDRVD 944 >UniRef50_C5C3C7 ATP-dependent nuclease subunit B-like protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C3C7_BEUC1 Length = 1043 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 100/718 (13%), Positives = 201/718 (27%), Gaps = 86/718 (11%) Query: 302 SWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRS 361 R+ + L+D + L ++D + A AGV + + Sbjct: 200 RLAHAERELLAALADARPLHAV--------VALTGVRRADEEVVRGLAEAGVEVPQERAD 251 Query: 362 DNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPF 421 D R + EV ++ L+A LE P V+ A Y+ Sbjct: 252 DGARLGPAPPVATYVRHASDADDEVRLVARELVATLETVPAHRA---AVLYAGASPYARL 308 Query: 422 IQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAA 481 + + P R + +F++LL LP +RF DV L + Sbjct: 309 LHERLETVGIRVNGP----GVRGVAERAITRSFLALLRLPQARFARADVFRALADAPVRT 364 Query: 482 RFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQ 541 + + Q + + G D D W R+ Sbjct: 365 SDG-SPVPVARWEQVSRLAAVVEGTDWDARLR---------DWAARQHRVAETERAADDP 414 Query: 542 GEWQSVLPYDESSGLIA--ELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 599 + A +G L + + + R + L + Sbjct: 415 RPAVLEAADRDVETAEAMRREIGALIADVTRGTELRTWRELAAWALDLLAARYGESDDLR 474 Query: 600 LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPV 659 E + A + + + + LS + + L++ V Sbjct: 475 RLPPEEQYAAAALTSALRGLE---VLDDVDPVADLSTAVEAIELELERAVPRVGRFGEGV 531 Query: 660 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPL---GFDLMSQKPKRGDRSRRDDDRYLF 716 + L + + VV ++G+ + YP +L G D + + DDR+ Sbjct: 532 YVGPLGEVAGLDADVVFVVGLAEDAYPGRLRADALLGADARAATDRLAPARTWIDDRHRA 591 Query: 717 LEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG-------------QSHYLPG 763 L +A ++ ++ ++ ++ER P+ + + + +S +L G Sbjct: 592 LLGAFAAAPRVVATFPRGDLRRSTERLPTRWLLPTLRALASDRDLAVTDWDTIRSPHLTG 651 Query: 764 DEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQP 823 + + + + A P AR+ L G + + Sbjct: 652 SPSFATELTTTPLPADEQEW-RVRAASAGALVPDAVVDAARDLLAGRRGPGLSRYDGDLS 710 Query: 824 LPFTLPET------VPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSR 877 LP+ V +L+ F P F Q L+V E P + L Sbjct: 711 ASAGLPDHATGTPVVSPTSLESFAECPHAWFVQRLLRVQPLELPEETVTISPLEIGTLV- 769 Query: 878 YQINQQLL----------------NALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQC 921 + +L+ + + + R G + E+ E Sbjct: 770 HACLDRLVRTSEALPANGAPWSAADRARLAEIFDTKAREAARRGATGHARLWEVEREALL 829 Query: 922 QEMQQ----------------LADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDG 963 +++ + LA + + + + + V + G +V G Sbjct: 830 RDLGRMLDDDDAWRASRGATVLASELTFGTDGAEPVRVAVPGGAVALRGSADKVDRAG 887 >UniRef50_B6WA23 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WA23_9FIRM Length = 910 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 87/606 (14%), Positives = 188/606 (31%), Gaps = 93/606 (15%) Query: 339 QSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLE 398 +SDIL++ + + E N S+I S E+E + + ++ Sbjct: 268 KSDILDINH-------LYENFEKYNPEKFWDKTSNIKIVESISSTNEIENMALMIEKLIR 320 Query: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458 + DI +++A+ D Y I+ +F +P I + + V++ ++SL+ Sbjct: 321 --KGYSYSDISLVMANEDEYENLIRRIFSRM----NIPIFIDKSQKMSDNHVVKTWLSLI 374 Query: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRY---LRQWVNESGIRWGIDDDNVRELE 515 L F D+ A + ++ D E L + ++N I+ + Sbjct: 375 RLVVFNFRKTDLEAFIRSDLI----DFGENSLERVLVFQNYMNTRKIKGSM--------- 421 Query: 516 LPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWR 575 + T Y E + + + + + +I +L L + + Sbjct: 422 IFDDKYFTLDENF------YKGEIKEEKKEELAKVNSIRKIILDLTNDLYEISNKNISAS 475 Query: 576 RGLAQERPLEEWLPVCRDMLNAFFLPDAETE----AAMTLIEQQWQAIIAEGLGAQYGDA 631 + + L + + N + + + I ++ I+ + + Sbjct: 476 DIVKKIFNLID-NERIKSGFNHYQEYIKDNKIEIYEENKQIWDKFITILEQIVSIMKDGK 534 Query: 632 VPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLA 690 L + + + + I A V I R K+ +GM D +P Sbjct: 535 ANLRKIYKLIQKACEATTIGLIPPAIDQVLIGDFSRDRINDRKIKIFVGMTDIYFPENNN 594 Query: 691 PL--------------GFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSI 736 GFDL K K+ D+ + L S QK+ SY + Sbjct: 595 SDMLISENEKTSLEKEGFDLKIYKAKKNDKILLN-----ILRMFTS-SQKIIFSYSLIN- 647 Query: 737 QDNSERFPSVLVQELIDYIGQSHYLPGDEA-------------LNCDESEARVKAHLTCL 783 ++N S + ++I+ Y + + +K Sbjct: 648 KNNDPMNKSTSISDIINIFPNISYQKISTGKFDLVKYSKDLLDMKAYQILWDIKEKEKVS 707 Query: 784 HTRMPFDPQNYQPGERQSYAREWLPAASQAGK------AHSEFVQPLPFTLPETV----- 832 F Q + S E+ + + + +S PL + + + Sbjct: 708 EIEKEFVKAYLQFKKDFSKNYEFNISKNSSYDLFIKGFTYSNQKNPLDKEISKKLYNKNR 767 Query: 833 -PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ 891 + ++ + P + F L+ S+ D + + + Y + ++ + Sbjct: 768 FSVSEIESYARCPYKYFINYGLRAK----KSKNLDVDMMEIGNIVHYNMEN--ISKDLRG 821 Query: 892 DDAERL 897 D E L Sbjct: 822 IDIENL 827 >UniRef50_Q02D21 ATP-dependent nuclease subunit B-like protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02D21_SOLUE Length = 987 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 88/640 (13%), Positives = 180/640 (28%), Gaps = 86/640 (13%) Query: 347 NRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPR 406 A + +++ + S + P+ D ++ E + R+ A + Sbjct: 215 EPATSLESLQRYLFSTDAVPVRDEDGTVEIFSTSGEALECVEIARRIGAR-----GIGFD 269 Query: 407 DIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFV 466 + +++ + Y P + A +P + R +R+ +F++LL + R Sbjct: 270 ECAILLRSPERYQPLVV----EALRRAGIPAHCT-RGSRRPDAAGRSFLALLHCAEERLS 324 Query: 467 SEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRF 526 + L + + + + ++ + G R L + Sbjct: 325 ASRFAEYLSLGQMPESE--EPRTPAAWERLLVDAAVIGGAARWETRLRGLREDFE----- 377 Query: 527 GLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEE 586 + + + L + M + L + E Sbjct: 378 -------------RRYAAAEEEEERARWRQRIDRLEALRAFAMPVIERLAALPERANWGE 424 Query: 587 WLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLD 646 W+ L F L D + + + I V L + L R Sbjct: 425 WIETLTA-LAEFTLNDPTRVLELLEELEPMREI----------GPVGLGEVLLVLGPRFQ 473 Query: 647 Q-ERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGD 705 Q + G V + + R + F+ V + G+N+G++PR A L Q+ G Sbjct: 474 QLSSAPEGARYGKVWVGGIEEARGMAFRAVYVPGVNEGLFPRPPAEDPLLLERQREALG- 532 Query: 706 RSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL--------------VQEL 751 + R +D L A A + +SY + R PS V E Sbjct: 533 IALRAEDTELLGIAAACATEHFALSYSRLDLLTGRVRVPSFYAFAAHRAAGGSEIDVHEF 592 Query: 752 IDYI--GQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPG---ERQSYAREW 806 + N ++ + L L Q + +S W Sbjct: 593 EKRARSATGTRIGWPAPENAADAIDDAEFDLATLAPLTKGSGQYLKSLPGRAVESLRARW 652 Query: 807 LPAASQAGKAHSEFVQPLPFTLPETV-------PLETLQRFWAHPVRAFFQMRLQVNFRT 859 + + A V + + TLQ++ P R + L + Sbjct: 653 MRWHAPWKAADGLVVDEIGDDALKRYRLGARAWSPSTLQQYARCPYRFALRGILGLRAVE 712 Query: 860 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFG-EIFWE 918 + I ++ R ++ ++ L R + LP + Sbjct: 713 NPTGIQ-----RMDPAQRGELFHRV---------QFELLRDLASRELLPVSPATLAGALD 758 Query: 919 TQCQEMQQLADRVIACRQPGQSMEIDLACNGVQ--ITGWL 956 ++ +A + A P ++ + GWL Sbjct: 759 RLDAVLEDVAAKAEAELAPAIPQIWRGEVQAIRADLRGWL 798 >UniRef50_C0WBY1 Predicted protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBY1_9FIRM Length = 1037 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 84/732 (11%), Positives = 203/732 (27%), Gaps = 144/732 (19%) Query: 299 LLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEF 358 L+ + GK L D +A + D LL + I+ + + Sbjct: 236 LVKALGKRVSISFGLFYDESRPDLSEATRKLEED-LLGDGYEKIIAPKKVSRPEDLAYFA 294 Query: 359 SRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSY 418 I S E++++ + L+ + P +I+++V +++ Y Sbjct: 295 ETFPKATGDAVAAQHIYLGEASSVDSEIKMVLTDVKKKLKS--GVAPHEILLLVRNLNDY 352 Query: 419 SPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPV 478 G + L ++D P+ L ++ + +LAL+ + Sbjct: 353 QGL-----GRYMEEYGLLSTLADVTDLAGQPLPLFLTKLWEAALTKDDTMPLLALMKTTL 407 Query: 479 LAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAME 538 + F + R+ +G+ +E Sbjct: 408 MQELFHVD-------------------------------------------RIAVGHLVE 424 Query: 539 SAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 Y E+ G + E + HL+ + L L + +W + L + Sbjct: 425 E---------SYIETPGFLLERISHLSG-VSDLKPLFEALQTPKTCTQWRDYLDERLTEW 474 Query: 599 FLPD-------------------AETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRD 639 L A++E + + +A+ V L + Sbjct: 475 DLVRTFGRLHQEGKVTLSEVKIMAQSEDFVRAFFDRLEALFEAVGSKDLS--VGLGDIFS 532 Query: 640 ELAQRLDQERISQRFL-AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS 698 + L I+ + + ++ +P+ V +LG+ DG++P Sbjct: 533 YWKEALIGTTITLTPSHEEGIRVMEASDIQGVPYPYVYILGVRDGLFPAISRESWLYSDE 592 Query: 699 QKPKRGDRS--------RRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE 750 ++ + R DR+ F A+ A++++++S+ S ++ Sbjct: 593 ERTELAALDIPLGTSARRLARDRFFFASAVSLAEKEVHLSWFADDEGG-----ASYYIER 647 Query: 751 LIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPA- 809 L + AL + V + + +Y + + A Sbjct: 648 LRHFFT-------PHALPFVTYHSDVHDCYSEPQMVRYLMEAENLGEKEATYLADHVDAK 700 Query: 810 --ASQAGKAHSEFVQPL------PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTED 861 + + + L P + L F P F +++ + Sbjct: 701 ILLRAQDEKNRFAPKSLYNGYLGPQEETLHLSASQLDGFLTCPFMYLFTHVWKLDVKEAK 760 Query: 862 SEIPDTE------PFILEGLSRYQINQQLLNALVE------QDDAERLFRRFRAAGDLPY 909 + P + L + + L +E + + + GD+P Sbjct: 761 TAFPTPDVVGNLIHLTLSRFMGRHLGEALFTKELEMLWQELSEAYQAAYTEMERNGDIPR 820 Query: 910 GAFGEIFWETQCQ--------------------EMQQLADRVIACRQPGQSMEIDLACNG 949 + + ++ + + + ++ + Sbjct: 821 SRYSDHIRKSYEEWLKRWLRMEVDYEEKSPTGVTVCAVEKAFGRKGAAWPPYDLTVDGKK 880 Query: 950 VQITGWLPQVQP 961 V ++G + ++ Sbjct: 881 VYLSGQIDRIDR 892 >UniRef50_C5CHH9 ATP-dependent nuclease subunit B-like protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHH9_KOSOT Length = 1030 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 188/657 (28%), Gaps = 72/657 (10%) Query: 338 IQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAML 397 I S+ L + + +++ + ++ V EVE + + + Sbjct: 247 ITSEKRFLSEQHLPKNLEPFLKTFFSEQKITQSCENVEVIVASDIFNEVEYISREIKRTI 306 Query: 398 EEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISL 457 + P DI ++ +D Y F + +P+ ++ + Sbjct: 307 KS--GYEPGDIAIVASDFSRYEKL----FSERLDEYGIPFRSEGDEPLLESRAVKMLLLP 360 Query: 458 LSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELP 517 + F E ++A+ D + ++ ++ ++ + + +++ Sbjct: 361 FETAVNGFKPEKIVAMGDFG-----YGGSKLDTKFFESIAIQARLIYDYPTLTLQK---- 411 Query: 518 ATGQHTWRFGLTR--------MLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS-LL 568 +W L R + + + Q + Y E + E + + Sbjct: 412 --RVESWEERLERYKELVQRKIRAVEEISDEEFIEQEISGYREVILRVDEEIEPAIERIF 469 Query: 569 MQLNIWRRGLAQERPLE-----EWLPVCR--DMLNAFFLPDAET-------EAAMTLIEQ 614 L +R ++ + EW + R + E E + +++ Sbjct: 470 QVLAPFRSLSRRDCRIYREYFYEWSELIRIEERYRKLVEESEEEPFRKLEGERELLALKR 529 Query: 615 QWQAII---AEGLGAQYGDAVPLSLLRDELAQRLDQERI-SQRFLAGPVNICTLMPMRSI 670 + ++ E L + + + L L S R + V I +L+ R Sbjct: 530 FFNDVLPALEELLLFLGKERISPADYHRYLMLILRNTSFKSSRAIENRVEIQSLLNARFS 589 Query: 671 PFKVVCLLGMNDGVYPRQLAPLGFDL---MSQKPKRGDRSRRDDDRYLFLEALISAQQKL 727 K+ +G NDG YP + + PK + + A+ +L Sbjct: 590 RKKIKFFVGFNDGYYPMIRMNPLYSFTQYDEKAPKDLLLVKEKQQKLNLYLAVTRTSDRL 649 Query: 728 YISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRM 787 Y SY S D PS +Q++I G + G + + + + Sbjct: 650 YFSYP-ESTIDGEPLLPSAYLQDVIKSAGVTPERVGQKEGRKVDIIPEL-ETVMSEKELK 707 Query: 788 PFDPQNYQPGERQSYAR-----EWLPAASQAGKAHSEFV---QPLPFTLPETVPLETLQR 839 + G +S + + + + + + + + LQ Sbjct: 708 IAVANYFNTGHWKSLKDRFGMGDLEKVLQGFNREFTWIISNRKKIEDHIGKVFSFSRLQS 767 Query: 840 FWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAE---R 896 + P + L++ P+ F L L + +L + + Sbjct: 768 YHKCPFSFYLAYILKIQ-------TPEEGLFELTPLEEGNVYHNVLKDYFSKSALDWEKS 820 Query: 897 LFRRFRAAGDLPYGAFGEIFWETQCQEMQQLAD-----RVIACRQPGQSMEIDLACN 948 L R + +E + + + ++ + +L Sbjct: 821 LEENMRKYIRHDSELVFKFEYERLRRVIAEYIQIKESKKLPKVEGEFEPTYFELGFG 877 >UniRef50_D1CD72 UvrD/REP helicase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD72_THET1 Length = 779 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 65/462 (14%), Positives = 134/462 (29%), Gaps = 50/462 (10%) Query: 327 VDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREV 386 LL E+ + A ++ R + + + Q E Sbjct: 282 YPEAKVILLEQNYRSYQEILDVASHIISSNRLRRPKKLWTNKSGGALVRVREAYDEQDEA 341 Query: 387 EVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQ 446 + + + T D VM P ++ F +PY I Sbjct: 342 SYIAREISRLTSLGE-YTYSDFAVMYRTNSQSRP-VEEAFSRY----RIPYQIIGGTRFY 395 Query: 447 SHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGI 506 ++ ++ L L + + + +++ + I + ++ L + + I Sbjct: 396 ERREVKDVLAYLRLIHNPHDAASLRRIIEN--TPSGRGIGKGTMKTLEDLASRAHI---- 449 Query: 507 DDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS 566 + + + LG G + L + E + L Sbjct: 450 ----------------SLWDAIE-IALGIKSLEEVGAFLPNLEIPKLQSKAKESLKQLVG 492 Query: 567 LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGA 626 L+ +L R L ++ L + +F AE + +E I A Sbjct: 493 LIYELREQRDILTLPHLIDTLL--IKSGYASFLSSGAEE--DLERLENARDLISIAQDYA 548 Query: 627 QYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686 + L E+ L + + + V + TL + + +KVV ++G +G+ P Sbjct: 549 AIDTSEALVEFLQEV--ALQSDVDTMQNNGNQVTLITLHAAKGLEYKVVFIIGFEEGLLP 606 Query: 687 RQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERF--P 744 + S +++ L + A +KLYISY + + P Sbjct: 607 HARSMDR------------ESDIEEECRLAYVGVTRAMEKLYISYAFHRNVFGATQTNVP 654 Query: 745 SVLVQEL-IDYIGQSHYLPGDEALNCDESEARVKAHLTCLHT 785 S + + D + S G S + + Sbjct: 655 SRFLANIPPDLLDGSLPSLGRRGPGRLTSTTSPRTPSGSTYP 696 >UniRef50_Q2FUG2 ATP-dependent nuclease subunit B-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUG2_METHJ Length = 1140 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 88/549 (16%), Positives = 173/549 (31%), Gaps = 97/549 (17%) Query: 382 PQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISD 441 P E+ + ++ + + ++ DI + D S + A D +P S Sbjct: 286 PATEMREVIREIVRL--HEIGVSYEDIAIATPDFRSTRVYA----LEACTDSGIPVRPSQ 339 Query: 442 RRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESG 501 QS P++ ++S+ L + ++++ ++ P R++ EE +SG Sbjct: 340 GSLLQSSPLIAYYLSIFDLIEKGMRYDELVRVIQSPYCRFRWE-PEEDADQKSGDQKKSG 398 Query: 502 IR------------------WGIDDDNVR-ELELPATGQHTWRFGLTRMLLGYAMESAQG 542 R +G+D ++ E LP + G + QG Sbjct: 399 KRDSRYKYLSYKNFDLLCRTYGLDGGHIDWEKRLPDVLLFSDDEGDE-----QPLPDGQG 453 Query: 543 EWQSVLP----YDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAF 598 QS P Y L + + +++L + L +R + E + + +L Sbjct: 454 FVQSKKPVSRTYHPRRPLEKQEIADTIEGIIRLVGIIKRLRDKRTIREHIWHFKTILKEI 513 Query: 599 FLPDAETEAAMTL-----------------IEQQWQAIIAEGLGAQYGDAVPLSLLRDEL 641 P A +L + + Q + G+ + AVP++ + Sbjct: 514 GSPVPGLAHANSLNAWLTDEEYLDLSSFHTLLSELQDLSGTGVISYLNPAVPVTFIDFIG 573 Query: 642 AQR--LDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ 699 A R L ++ + A V + + + + V L+ +N+G PR L F S+ Sbjct: 574 AVRHVLQEKSGNVSPDASGVILTGIREIAHQHYPYVFLVSLNEGHIPRLTTRLPFTNSSE 633 Query: 700 KPKRGDRSRRD---DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIG 756 + R+ D ++Y F+ AL + LY+S+ +D SV + DY+ Sbjct: 634 NSRMDTRTLSDILRQEKYQFITALAAGTTHLYLSW--YEHKDERTVLSSVFI----DYLK 687 Query: 757 QSHYLPG--------------------------DEALNCDESEARVKAHLTCLHTRMPFD 790 S LP + S + + + Sbjct: 688 SSTLLPEWGRGSDEGGYSGFPGDMEASYSAGVCIHNSEWERSRSYIPEDVLLSSLVQRIS 747 Query: 791 --PQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAF 848 R Y H +F + L+ + P R + Sbjct: 748 IERTYRFRLNRSEYDGIIGDDQIIRSALHFQFSPAYSW------SASMLETYAKCPFRFY 801 Query: 849 FQMRLQVNF 857 + L + Sbjct: 802 LERVLHIRP 810 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.135 0.368 Lambda K H 0.267 0.0413 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,692,717,914 Number of Sequences: 3077464 Number of extensions: 295330378 Number of successful extensions: 853899 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 936 Number of HSP's successfully gapped in prelim test: 1523 Number of HSP's that attempted gapping in prelim test: 842806 Number of HSP's gapped (non-prelim): 4690 length of query: 1122 length of database: 1,040,396,356 effective HSP length: 140 effective length of query: 982 effective length of database: 609,551,396 effective search space: 598579470872 effective search space used: 598579470872 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 99 (42.7 bits)