56 d1pjra1 Probab=9.97    E-value=79  Score=9.11  Aligned_columns=213  Identities=9%

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHCCC---CCC
Q ss_conf             79889999999999982767778767578858936999999999986074-47622179899999999985377---722
Q batch____         7 SNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGI-AANIDFPLPASFIWDMFVRVLPE---IPK   82 (1122)
Q Consensus         7 Snr~e~L~~~l~~~l~~~p~~~P~~~~~ilV~s~~~~~wL~~~LA~~~GI-~ani~f~~p~~~~~~l~~~~l~~---~~~   82 (1122)
                      |.|+.+++..+...+....  .|-.+..|+.+|+....-+...+.+..+. .-.+....+.+|.+.+.+.....   ...
T Consensus        35 TGKT~~l~~~i~~ll~~~~--~~~~~iL~lt~s~~a~~~~~~r~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~  112 (315)
T d1pjra1          35 SGKTRVLTHRIAYLMAEKH--VAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRN  112 (315)
T ss_dssp             SCHHHHHHHHHHHHHHTTC--CCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTSEEEEHHHHHHHHHHHHGGGGTCCTT
T ss_pred             CCHHHHHHHHHHHHHHCCC--CCHHHEEEECCCHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             8787999999999998089--99767778716989999898878875113346630212999999997764786187666


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHH
Q ss_conf             26579768899999985642047320799999612722437999999999999986407999999997698755558004
Q batch____        83 ESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQ  162 (1122)
Q Consensus        83 ~~~~~~~~L~W~l~~lL~~~~~~~~~~~L~~~l~~~~~~~~~~qla~~iA~lfdqY~~yRpd~l~~w~~~~~~~~l~~~~  162 (1122)
                      ....+.....-.+...+.+..........+.......      ..-...-+....+.......+..+..           
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  175 (315)
T d1pjra1         113 FSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTIS------AAKNELLPPEQFAKRYYEKVVSDVYQ-----------  175 (315)
T ss_dssp             CEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHH------HHHHTTCCHHHHTTCCHHHHHHHHHH-----------
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH------HHHHHCCCHHHHHHHHHHHHHHHHHH-----------
T ss_conf             4326958999999999874277722267899999999------99861279667555454433332112-----------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEC
Q ss_conf             36999999999984314888101788999999997404554010797499965488899999999998601728998617
Q batch____       163 AWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTN  242 (1122)
Q Consensus       163 ~wQ~~Lwr~l~~~~~~~~~~~~h~~~l~~~~l~~l~~~~~~~~~Lp~ri~ifG~s~l~p~~l~~L~aLs~~~~V~l~l~n  242 (1122)
                             ........................+............-.+.|+|+....++|.++.++..|+....-.+++=.
T Consensus       176 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vDe~Qd~~~~q~~ll~~l~~~~~~l~l~GD  248 (315)
T d1pjra1         176 -------EYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGD  248 (315)
T ss_dssp             -------HHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             -------HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             -------3567765304566368999999996328999985102483562013540998999999997246986999803


Q ss_pred             CCH
Q ss_conf             986
Q batch____       243 PCR  245 (1122)
Q Consensus       243 P~~  245 (1122)
                      |.+
T Consensus       249 ~~Q  251 (315)
T d1pjra1         249 ADQ  251 (315)
T ss_dssp             GGG
T ss_pred             CCC
T ss_conf             331