HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/ca51ccaca33865ce/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/ca51ccaca33865ce/query.hhm DATE Sun Jan 8 04:04:34 2012 LENG 72 match states, 72 columns in multiple alignment FILT 28 out of 30 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.9 EVD 0.4414 1.6454 SEQ >ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEECCCCEEEECHHHHHHHHHC >ss_conf 930378999999999973368870899806758998789844277880999946899899769998876519 >Consensus MKxxxxxxxxxxxxfxlAGCsSxyvittxdGxxixTxgkPxxDxxtGxyxyxdxxGxxxxInrdxVxqixEx >batch____ MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER >UniRef50_C2LHN8(3-74:77) Lipoprotein n=3 Tax=Proteus RepID=C2LHN8_PROMI E=9e-14 s/c=1.08 id=39% cov=100% LKTILPICAASFSLLLLAGCSSPQKIETVDGQTILTTDKPQEDESTGLIIYKDAEtGAIKQINRDQIRRMVE- >UniRef50_UPI0001746835(1-72:73) hypothetical protein VspiD_01880 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746835 E=4e-07 s/c=0.78 id=29% cov=100% MKSRLVVLLTCAGTLLVSGCgSSPYKITLRDGREYFTASRPEFNEKTGYYKFRSLNDRDALIRSDEILMMQE- >UniRef50_Q48JT4(35-85:89) Lipoprotein n=8 Tax=Pseudomonas RepID=Q48JT4_PSE14 E=0.0002 s/c=0.91 id=26% cov=69% ------------------GCSTPSVVTLQNGTQYITKDMPKTKSRDGFYEFEDISGKRVRIKADEVA----- >UniRef50_C6BWR9(1-72:75) Putative uncharacterized protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWR9_DESAD E=2e-13 s/c=1.07 id=28% cov=100% MKHILVAGLLCVGMLVFAGCGSkHHTITKTDGSTAVSVGAPQYNKDSNTYTYENLGGQQTTIKREDVQQIEE- >UniRef50_A6VF03(5-68:70) Lipoprotein, putative n=6 Tax=Pseudomonas aeruginosa RepID=A6VF03_PSEA7 E=7e-12 s/c=1.12 id=23% cov=85% ---------AALLLTSLAGCANQAVVTLQDGSEVLVKDQSDYDKYNDYYEFEQLNGDTILIKKDNVRTI--- >UniRef50_C0Q3T7(1-71:78) Putative lipoprotein n=33 Tax=Enterobacteriaceae RepID=C0Q3T7_SALPC E=8e-10 s/c=0.91 id=33% cov=100% MQKCSLITVLSLSVLMLAGCTTTYTMTTRTGEIIETQGKPEVDTATGMTKYADVYGYHRVIKTSEIVQTTE- >UniRef50_B9XNY8(1-68:85) Putative uncharacterized protein n=1 Tax=bacterium Ellin514 RepID=B9XNY8_9BACT E=5e-05 s/c=0.72 id=26% cov=65% ---------------LLAGCASNYNVILTNGRVYTTSTKPKLDKAKNRYVFKDTSGQPVEV----------- >UniRef50_C6CC10(1-70:73) Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703 RepID=C6CC10_DICDC E=6e-19 s/c=1.36 id=39% cov=97% MKHKVLATVALIAPFLIAGCASNYVLTTQDGDAIIAEGKPSVDEETGMIAFTDVWGRQQQLNKDNVKQI--- >UniRef50_D1U577(1-73:75) Putative uncharacterized protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U577_9DELT E=2e-09 s/c=0.87 id=27% cov=101% MKRFITTLLVLLMLIVLAACGSrNYQVTTKTGETFHTQGAPEYDMKSETYKFTDEKGEEVILKRADVDVIQEQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 3800 107 * * * * * * * * * 1 0 * * * * * * 3614 0 0 K 2 * * * * * * * * 205 * * * * 3871 3964 * * * * * 2 0 * * * * * * 3741 0 0 K 3 * * * * * * 2974 * 1264 * 4382 * 4369 4326 3024 3601 4553 4010 * * 3 0 * * * * * * 3714 0 0 W 4 * 3912 * * 3138 * * 2612 4205 1784 * * * * 3601 * 3723 4595 3154 * 4 132 * 3515 * * * * 3714 0 0 A 5 2637 * * * 4176 * * 3612 4310 1938 3242 * * * * 3780 3894 2786 * * 5 0 * * * * 959 1042 3743 0 1486 V 6 3088 * * * 3574 * * 4508 * 2473 4204 * 4491 * * * 2487 1750 * * 6 0 * * * * * 0 3734 0 1000 I 7 2275 4495 * * * * * 1289 * 3404 * * 4350 * * * 3729 3049 * * 7 0 * * * * 0 * 3739 0 1000 I 8 * 3709 * * 4838 3856 * 2315 * 1399 4677 * * * * 4549 3204 * * 4352 8 68 * 4437 * * * * 3822 0 0 S 9 3509 * * * 3752 3075 * 4426 * 2107 * * 4416 * * 2167 4079 3158 * * 9 0 * * * * * 0 3785 0 1000 A 10 1160 * * * * 4955 * 4607 * 2207 * * * * * * 2347 3918 * * 10 0 * * * * * 0 3940 0 1000 V 11 2028 2307 * * 3626 4880 * * * 2360 4024 * * * * 3496 * 3431 * * 11 76 * 4281 * * 0 * 3940 0 1000 G 12 2521 * * * 3841 3548 * 3410 * 1694 3949 * * * * 4874 4020 3228 * * 12 0 * * * * * 0 3923 0 1000 L 13 3620 3012 * * * 3024 * 4906 * 1469 2967 * * * * 3550 3966 * * * 13 0 * * * * * 0 3913 0 1000 A 14 2339 * * * 4970 4937 * * * 1913 3462 * 4525 * * 3510 2675 3414 * * 14 46 4987 * 0 * 0 * 3913 1000 1000 F 15 4733 * * * 1031 * * 4007 * 1717 * * * * * * 3229 * * * 15 0 * * * * * * 3939 0 0 A 16 2391 * * * * 3748 * * * 1614 3326 * * * * 3023 3654 3236 * * 16 114 3719 * 953 1049 * * 3938 1542 0 V 17 * * * * 4280 * * 3913 * 719 * * * * * * * 1864 * * 17 0 * * * * * * 3938 0 0 S 18 544 * * * * * * * * * * * * * * 2394 3522 4770 * * 18 72 4361 * 2585 263 * * 3938 1000 0 G 19 3173 4476 * * * 244 * * * * * * * * * * * * * * 19 0 * * * * * * 3946 0 0 C 20 * 66 * * * 4476 * * * * * * * * * * * * * * 20 82 4176 * 0 * * * 3946 1000 0 S 21 2314 * * * * 2717 * * * * * * * * * 931 3032 * * * 21 81 4194 * 0 * * * 3946 1336 0 S 22 * * * * * * * * * * * 3333 * * * 395 2836 * * * 22 153 3314 * 0 * * * 3946 1562 0 D 23 * * 3402 5030 * * 3544 * * * * 1612 2012 2846 * 5033 4487 * * * 23 76 4280 * 0 * * * 3946 1000 0 Y 24 4098 * * * * * 3754 * * * * * * 3192 * 2893 * * * 682 24 0 * * * * * * 3946 0 0 V 25 3608 * * * * * * 3914 3143 4476 * 4558 * 4291 * * 3410 983 * * 25 0 * * * * * * 3946 0 0 M 26 * * * * * * * 1732 * 2872 1914 * * * * * * 1750 * * 26 0 * * * * * * 3946 0 0 A 27 3637 * * 3211 * * 3657 4558 5266 * * * * 3812 * 3632 1119 4280 * * 27 0 * * * * * * 3946 0 0 T 28 * * * * * * * * 3324 2027 * * * 4460 * * 715 * * * 28 0 * * * * * * 3946 0 0 K 29 * * * * * * * * 1918 * * 2894 * 2822 2782 3608 2523 4110 * * 29 0 * * * * * * 3946 0 0 D 30 * * 655 3623 * * * * * * * 2409 * * * * 3385 * * * 30 0 * * * * * * 3946 0 0 G 31 * * * * * 76 * * * * * * * * * * * * * 4280 31 0 * * * * * * 3946 0 0 R 32 * * 4849 2775 * 4280 * * 2920 * * * * 2347 2074 2705 4371 * * * 32 0 * * * * * * 3946 0 0 M 33 4849 * * 2694 * * * 3379 * * 2343 * * 3414 * * 1572 3517 * * 33 0 * * * * * * 3946 0 0 I 34 4337 * * * 4291 * 4280 985 * 3903 * * * * * * * 2945 * 2775 34 0 * * * * * * 3946 0 0 L 35 * * * 4487 4176 * 4291 2609 * 2346 * * * 4614 * * 2702 1767 * * 35 0 * * * * * * 3946 0 0 T 36 3536 * * * * * * * * * * * * * * 2477 565 4098 * * 36 0 * * * * * * 3946 0 0 D 37 4176 * 2357 3631 * * 3391 * 3228 4614 * * 4460 2482 * 3412 4110 4337 * * 37 0 * * * * * * 3946 0 0 G 38 * * 1995 * * 700 * * * * * * * * * 3457 4558 * * * 38 0 * * * * * * 3946 0 0 K 39 3314 * * 4460 * * * * 619 * 4371 * * 4098 3379 * * * * * 39 0 * * * * * * 3946 0 0 P 40 * * * * * * * * * * * * 87 * * 4098 * * * * 40 0 * * * * * * 3946 0 0 E 41 * * 2794 1859 * * 5033 * 2540 * * * * 2322 3607 4849 * 4038 * * 41 0 * * * * * * 3946 0 0 I 42 * * * 3499 4176 * * 4083 * 1987 * * * * * * 3787 2138 * 2028 42 0 * * * * * * 3946 0 0 D 43 * * 403 * * * * * 4371 * * 2357 * * * * * * * * 43 0 * * * * * * 3946 0 0 D 44 * * 3174 1868 * * * * 1985 * 4291 3752 3511 * * 3253 4487 * * * 44 0 * * * * * * 3946 0 0 D 45 3020 * 1540 2795 * * * * 2408 * * * * * 4371 3417 * * * 4098 45 0 * * * * * * 3946 0 0 T 46 * * 4371 * * * * * 4558 * * 2641 * * * 2822 719 * * * 46 0 * * * * * * 3946 0 0 G 47 * * 3186 4291 * 421 * * * * * 3443 * * * * * * * * 47 0 * * * * * * 3946 0 0 L 48 * * * * 2893 * * * * 2258 1522 * * * 4558 * 2717 * * 3137 48 0 * * * * * * 3946 0 0 V 49 * * * * * * * 2169 * 3903 * * * * * * 3447 3386 * 934 49 0 * * * * * * 3946 0 0 S 50 3938 * * 1897 * * * 4110 2727 * * * * * 4807 1974 3006 4558 * * 50 0 * * * * * * 3946 0 0 Y 51 * * * * 1425 * * * * * * * * * * * * * * 672 51 67 * 4460 * * * * 3946 0 0 H 52 4455 * * 1910 * * 5403 * 1971 * * * * * 2909 * 2061 * * 4761 52 0 * * * * 0 * 3907 0 1000 D 53 * * 517 4460 * * * * * * * 3308 * 3333 * 4176 * * * * 53 76 4280 * 0 * * * 3946 1126 0 Q 54 2450 * * 2849 * * * 3357 4460 2293 * * 5547 3382 * 5030 3677 3250 * * 54 0 * * * * * * 3946 0 0 Q 55 4311 * 2930 2268 * 4337 * * 4291 * * 2570 * 4500 * 3461 3280 * 4849 3852 55 39 5232 * 0 * * * 3946 1000 0 G 56 * * 4176 * * 131 * * * * * * * * * * 4997 * * * 56 0 * * * * * * 3946 0 0 N 57 5232 * 4098 4291 * 4997 4460 5033 2440 * * 2593 * 3084 2677 4280 * 4787 * 4487 57 0 * * * * * * 3946 0 0 A 58 4208 * 4176 1838 * * 4487 5232 2936 * * * 3586 2929 3564 * 3186 * * * 58 0 * * * * * * 3946 0 0 M 59 4176 * * 4280 * 4614 3529 3478 5232 * 3488 * * 2790 3447 * 4337 1865 * * 59 46 4997 * 0 * * * 3946 1000 0 Q 60 4311 * * 3481 * * * 4291 4614 3137 4807 * * 1396 4371 4476 4337 3379 * * 60 0 * * * * * * 3946 0 0 I 61 * * * * * * * 348 * 3543 4460 * * * * * * 3586 * * 61 0 * * * * * * 3946 0 0 N 62 * * * * * * * * 1735 * * 1058 3603 * 4138 3643 * * * * 62 0 * * * * * * 3956 0 0 R 63 4339 * * * * * * * 1715 * * * * 4100 1337 3208 3583 * * * 63 0 * * * * * * 3956 0 0 D 64 3247 * 763 4238 * * * * * * * 3490 * * * 2847 5359 * * * 64 0 * * * * * * 3956 0 0 D 65 * * 1413 2718 * * * * * * * 2967 * 1704 * 4733 * * * * 65 0 * * * * * * 3956 0 0 V 66 * * * * * * * 1790 * 3690 * * * * * * * 659 * * 66 0 * * * * * * 3956 0 0 S 67 3311 * 4198 * * * * 5315 1714 4138 * * * 4238 2600 3604 4703 3065 * * 67 0 * * * * * * 3956 0 0 Q 68 * * 5048 4010 * * * * * * 4069 5182 * 970 3928 5146 2653 4123 * * 68 0 * * * * * * 3999 0 0 I 69 * * * * * * * 1347 * 4076 1276 * * * * * 4361 3540 * * 69 0 * * * * * * 3999 0 0 I 70 * * * 3115 * * * 2103 * 4711 3548 * * 2965 3119 2910 4300 3306 * * 70 0 * * * * * * 3815 0 0 E 71 * * * 108 * * * * 3787 * * * * * * * * * * * 71 0 * * * * * * 3810 0 0 R 72 * * * * * * * * 2327 * * * * 2459 693 * * * * * 72 0 * * 0 * * * 2729 0 0 //