BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (239 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 484 e-136 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 340 2e-92 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 252 9e-66 UniRef50_Q398T9 Two component transcriptional regulator, winged ... 248 1e-64 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 242 7e-63 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 227 2e-58 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 224 2e-57 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 221 1e-56 UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea ph... 219 6e-56 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 216 4e-55 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 214 3e-54 UniRef50_C7I0W4 Two component transcriptional regulator, winged ... 211 2e-53 UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV... 209 7e-53 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 206 4e-52 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 206 6e-52 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 204 2e-51 UniRef50_D1U371 Two component transcriptional regulator, winged ... 204 2e-51 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 202 8e-51 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 202 1e-50 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 200 3e-50 UniRef50_B8IVD0 Two component transcriptional regulator, winged ... 199 5e-50 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 199 6e-50 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 199 7e-50 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 199 9e-50 UniRef50_P31079 Protein petR n=50 Tax=Alphaproteobacteria RepID=... 197 3e-49 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 195 1e-48 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 194 1e-48 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 193 3e-48 UniRef50_Q5NY91 Response regulator n=1 Tax=Aromatoleum aromaticu... 193 5e-48 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 192 6e-48 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 192 7e-48 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 192 1e-47 UniRef50_A7ICZ4 Two component transcriptional regulator, winged ... 191 2e-47 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 191 2e-47 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 190 3e-47 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 190 3e-47 UniRef50_A6VRR3 Two component transcriptional regulator, winged ... 190 4e-47 UniRef50_A0LA52 Two component transcriptional regulator, winged ... 189 5e-47 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 189 6e-47 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 189 7e-47 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 189 8e-47 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 187 2e-46 UniRef50_C4TUI5 Response regulator consisting of a CheY-like rec... 187 2e-46 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 187 3e-46 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 187 3e-46 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 187 3e-46 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 186 4e-46 UniRef50_Q16CN7 DNA-binding response regulator PetR, putative n=... 186 7e-46 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 186 8e-46 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 185 1e-45 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 185 1e-45 UniRef50_B1ZLF1 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 184 2e-45 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_A9DQD6 Probable two-component response regulator protei... 184 2e-45 UniRef50_Q1GLX1 Two component transcriptional regulator, winged ... 184 3e-45 UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax... 182 6e-45 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 182 7e-45 UniRef50_A0L527 Two component transcriptional regulator, winged ... 182 7e-45 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 182 1e-44 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 182 1e-44 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 181 1e-44 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 181 2e-44 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 181 2e-44 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 181 2e-44 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 181 2e-44 UniRef50_B6R185 Response regulator in two-component regulatory s... 181 2e-44 UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional r... 181 2e-44 UniRef50_Q3A190 Two component signal transduction response regul... 181 2e-44 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 180 3e-44 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 180 4e-44 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 180 4e-44 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 179 5e-44 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 179 6e-44 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 179 7e-44 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 179 7e-44 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 179 7e-44 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 179 1e-43 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 178 1e-43 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 178 2e-43 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 177 2e-43 UniRef50_B8JG70 Two component transcriptional regulator, winged ... 177 4e-43 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 177 4e-43 UniRef50_C4ZP42 Two component transcriptional regulator, winged ... 177 4e-43 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 176 5e-43 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 176 5e-43 UniRef50_A1SYE4 Two component transcriptional regulator, winged ... 176 5e-43 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 176 6e-43 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 176 8e-43 UniRef50_Q488T3 DNA-binding response regulator n=4 Tax=Alteromon... 176 8e-43 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 175 1e-42 UniRef50_B0KI24 Two component transcriptional regulator, winged ... 175 1e-42 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 175 1e-42 UniRef50_Q2P1E0 VirG-like two component response regulator n=13 ... 175 1e-42 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 174 2e-42 UniRef50_C4L340 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 174 2e-42 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 174 2e-42 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 174 3e-42 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 174 3e-42 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 173 4e-42 UniRef50_UPI00016988BE Two component Transcriptional regulator, ... 173 4e-42 UniRef50_Q7CXM1 Two component response regulator n=11 Tax=Alphap... 173 5e-42 UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax... 172 8e-42 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 172 9e-42 UniRef50_D0Z2F0 DNA-binding response regulator n=1 Tax=Photobact... 172 9e-42 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 172 9e-42 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 172 1e-41 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 172 1e-41 UniRef50_B8H2H3 Two-component response regulator petR n=8 Tax=Al... 172 1e-41 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 172 1e-41 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 171 1e-41 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 171 1e-41 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 171 2e-41 UniRef50_A9KX94 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_Q2S740 Response regulator consisting of a CheY-like rec... 171 2e-41 UniRef50_B2V706 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_A1B7Z0 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 171 2e-41 UniRef50_A4AL32 Putative two-component system response regulator... 171 3e-41 UniRef50_C3JXL3 Oxidative stress related two component system, t... 171 3e-41 UniRef50_C6QH06 Two component transcriptional regulator, winged ... 171 3e-41 UniRef50_A9BR19 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_Q0SQL4 Two-component response regulator n=10 Tax=Firmic... 170 5e-41 UniRef50_B8G223 Two component transcriptional regulator, winged ... 170 5e-41 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 169 7e-41 UniRef50_A6VT30 Two component transcriptional regulator, winged ... 169 7e-41 UniRef50_B4SKL2 Two component transcriptional regulator, winged ... 169 7e-41 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 169 8e-41 UniRef50_B7VQ15 DNA-binding response regulator n=8 Tax=Vibrional... 169 1e-40 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 168 1e-40 UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholde... 168 1e-40 UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas s... 168 1e-40 UniRef50_Q1V0J5 Two-component system n=3 Tax=Candidatus Pelagiba... 168 1e-40 UniRef50_Q15TH0 Two component transcriptional regulator, winged ... 168 1e-40 UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splen... 168 2e-40 UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged... 167 2e-40 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 167 2e-40 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 167 2e-40 UniRef50_P07545 Regulatory protein virG n=21 Tax=cellular organi... 167 2e-40 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 167 3e-40 UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=... 167 4e-40 UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=I... 166 5e-40 UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragmen... 166 5e-40 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 166 6e-40 UniRef50_A6G4N0 DNA-binding response regulator n=1 Tax=Plesiocys... 166 6e-40 UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Rose... 166 7e-40 UniRef50_C6NV64 Two component transcriptional regulator, winged ... 166 8e-40 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 165 9e-40 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 165 1e-39 UniRef50_D0XTW3 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 165 1e-39 UniRef50_B8I014 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_B8IIA6 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostri... 164 2e-39 UniRef50_B6R2K8 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 164 2e-39 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 164 2e-39 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_A9ANV0 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_B2IFK7 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_B5ELJ1 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 164 3e-39 UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacter... 164 3e-39 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 164 3e-39 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 164 3e-39 UniRef50_A1S1W0 Response regulator receiver protein n=1 Tax=Shew... 163 4e-39 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_B0S1J7 Two-component response regulator n=16 Tax=Clostr... 163 5e-39 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 163 5e-39 UniRef50_A1VTZ3 Two component transcriptional regulator, winged ... 162 6e-39 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 162 6e-39 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 162 8e-39 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 162 1e-38 UniRef50_A3ERN0 Putative two component transcriptional regulator... 162 1e-38 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 162 1e-38 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 162 1e-38 UniRef50_A4J7U5 Two component transcriptional regulator, winged ... 162 1e-38 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_D0XTW5 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_Q7ULL1 Two-component system response regulator n=1 Tax=... 161 1e-38 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 161 2e-38 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 161 2e-38 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_A8GHG0 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 160 3e-38 UniRef50_B5J7Y1 Response regulator receiver domain protein n=1 T... 160 3e-38 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 160 3e-38 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 160 3e-38 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 160 4e-38 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 160 4e-38 UniRef50_A8GAJ9 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 160 4e-38 UniRef50_C8Q1W1 Two component transcriptional regulator, winged ... 160 5e-38 UniRef50_C4L703 Two component transcriptional regulator, winged ... 159 6e-38 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 159 6e-38 UniRef50_B8I272 Two component transcriptional regulator, winged ... 159 6e-38 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 159 7e-38 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 159 7e-38 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 159 8e-38 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 159 8e-38 UniRef50_Q7M8N6 RESPONSE REGULATOR OMPR-CheY-like and winged-hel... 159 9e-38 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 159 9e-38 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 159 9e-38 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 159 1e-37 UniRef50_Q2S9I1 Response regulator consisting of a CheY-like rec... 158 1e-37 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 158 1e-37 UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudoma... 158 1e-37 UniRef50_C6CHY9 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_A9VUJ1 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 158 2e-37 UniRef50_A3QF24 Two component transcriptional regulator, winged ... 158 2e-37 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 158 2e-37 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 158 2e-37 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 157 2e-37 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 157 2e-37 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory pro... 157 3e-37 UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobact... 157 3e-37 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 157 3e-37 UniRef50_Q11E93 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 157 4e-37 UniRef50_A7HP70 Two component transcriptional regulator, winged ... 156 4e-37 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 156 5e-37 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 156 5e-37 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 156 5e-37 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 156 5e-37 UniRef50_Q892Y1 Alkaline phosphatase synthesis transcriptional r... 156 5e-37 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 156 6e-37 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 156 6e-37 UniRef50_C0WE14 Two-component system transcriptional regulator n... 156 7e-37 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 155 7e-37 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 155 8e-37 UniRef50_D0WFD8 DNA-binding response regulator VicR n=1 Tax=Slac... 155 8e-37 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 155 9e-37 UniRef50_A5W315 Two component transcriptional regulator, winged ... 155 9e-37 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 155 9e-37 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 155 9e-37 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 155 9e-37 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG Sbjct: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL Sbjct: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL Sbjct: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA Sbjct: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 161/233 (69%), Positives = 196/233 (84%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVVDDD+RLR LL+R+L ++GF V++ +A QMDRLL RE F L+VLD MLP EDGLS Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 ICRRLR + PIIM+TA+G + DRI GLE GADDY+PKPFNP ELLARIRAVLRRQ Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E+PGAPSQ+ V++FG + L+L TR + RE + + LT+GEFAVLKALV HPREPL+RDKL Sbjct: 142 EVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 MNLARGRE+ AMERSIDVQ+SRLRR++E++PA RYIQTVWG+GYVFVPDG++ Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDGAE 254 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 252 bits (643), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 113/228 (49%), Positives = 167/228 (73%), Gaps = 1/228 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KI+++DDD ++R L+++YL +QGF + + + +D++L + + L++LDLMLP E+GL Sbjct: 4 KIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLD 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC+RLR +PIIM+TAKG+EVDRI+GLE+GADDY+PKPFNPRELLARI ++ RR Sbjct: 64 ICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHEM 123 Query: 126 ELPGAPSQEEA-VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 EL ++ I F F+ N R + ++ + + LTSGEF++LK + + +PLSRD+ Sbjct: 124 ELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRDQ 183 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +M LA+G+E +RSIDVQISR+R+++EEDP P+Y++T WG GYVF Sbjct: 184 IMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231 >UniRef50_Q398T9 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q398T9_BURS3 Length = 395 Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/233 (49%), Positives = 174/233 (74%), Gaps = 1/233 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+++ +I+V+DD+ LR +L+R+LT GFQVR+VA+ +++DRLL RE + L+VLDLM+ Sbjct: 159 MEQSCRIVVLDDEAELRNMLQRFLTGHGFQVRAVADGKRLDRLLQREPYDLLVLDLMMEP 218 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CRRLR++ +PI+M+TAKG+ D++VGLE GADDY+ KPF P EL+AR+RA+L Sbjct: 219 EDGLSVCRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALL 278 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQ G P+ + FG F ++G + + R+ P+ + S + +L AL S P + Sbjct: 279 RRQ-KMAAGEPTVTSQRLRFGAFTFDVGQQTLMRDGTPVEIHSAQMLLLHALGSSPNRAV 337 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SR+ L+ ARGR+++A++RS+DVQI RLR++VE+DP PR+I+TVWG+GY+ V Sbjct: 338 SRENLLARARGRDHAALDRSVDVQILRLRQIVEDDPGKPRFIKTVWGIGYMLV 390 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 242 bits (618), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 125/232 (53%), Positives = 167/232 (71%), Gaps = 3/232 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGEDGL 64 +ILVVDDD ++ LL RYL EQGF VR V + +MD L + L+VLD+MLPGEDGL Sbjct: 16 RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDGL 75 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 SI RRL ++ P P+IM++A+GE++DRIVGLEIGADDY+PKPFNPRELLARIRAVLRRQ Sbjct: 76 SIARRLDPKTRP-PVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 E P A +++ I G F ++ TR+ F D + LT GE+ +L+ + P ++RD+ Sbjct: 135 ME-PDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRDQ 193 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 +M+ +G E SA +RSIDV+I+RLRR +E +P PRY+ T+WG GY+F P G Sbjct: 194 IMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSG 245 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 120/234 (51%), Positives = 161/234 (68%), Gaps = 3/234 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + ILVVDDD +R LL YL + GF V AN +M R++ +E +L+VLDLMLPG Sbjct: 1 MSDQNHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CR +R+Q + +PIIM+TAKG VDRI+GLE+GADDY+PKPF+PRELLARI+ +L Sbjct: 61 EDGLSLCREVRAQGD-LPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVIL 119 Query: 121 RRQANELPGAPSQEE-AVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPRE 178 RR N+ A +E + I+F ++L+ R+MF E + L S ++ VL+AL+ HP Sbjct: 120 RRTRNDRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNR 179 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 PLSRD L+ G+E AM+RSIDV ISRLR +E D +P I+TV GY+ Sbjct: 180 PLSRDFLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYML 233 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 122/232 (52%), Positives = 165/232 (71%), Gaps = 2/232 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+VDDD LR LL YL QG +V + +A +++ L RE L+VLDLM+PG DGL+ Sbjct: 68 QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 127 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL-RRQA 124 R+LR+ + +P+IM+TA+ ++VDRIVGLE+GADDY+ KPFNPRELLAR++AVL RR+A Sbjct: 128 ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 187 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 AP Q E AFG+F L+ R + + +P L+S EFA+LK V+H L+R++ Sbjct: 188 TPSAAAPEQREP-FAFGRFVLDFQARTLSIDGKPATLSSSEFALLKIFVNHALRTLTRER 246 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L+ L G EY +R IDVQ+ RLRR++E DP+ PR+IQTV G GYVFVPDG Sbjct: 247 LLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDG 298 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 121/236 (51%), Positives = 160/236 (67%), Gaps = 7/236 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+DD + L+ RYL +V ++ +MDRLL L+VLDLMLPGEDGLSI Sbjct: 20 ILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDGLSI 79 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CRRLR+QS MPI+M+TAK EE+DRIVGLE+GADDY+ KPFNPRELLARIRAVLRR + Sbjct: 80 CRRLRAQST-MPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRRGSG- 137 Query: 127 LPGAPSQEEAV--IAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLSRD 183 G+ E+ V + F F L+ G R++ D + LT+ EF +L A+ P LSRD Sbjct: 138 --GSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRD 195 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 +L++L +GR ERSIDV +SR+R+ +E D +P I+T+ GYVF P+ S+A Sbjct: 196 QLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVSRA 251 >UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5A2_9RHIZ Length = 235 Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 111/235 (47%), Positives = 158/235 (67%), Gaps = 3/235 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 ++ +++VVDDD LR LL R+L+E GF+ R+V +DR L+R +VLDLM+ GED Sbjct: 4 KSDRVIVVDDDPELRTLLRRFLSEHGFETRAVDGGTALDRELSRSPADAIVLDLMMSGED 63 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL+ICRRLR+ + PIIM+TA+G+ +DRIVGLE GADDY+ KPF PREL+AR+ AVLRR Sbjct: 64 GLAICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRR 123 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + P+ + + G ++N TR + R+ + L+S EFA+L A+V PLSR Sbjct: 124 TRG-MRDVPTDD--TVTIGPLEINFSTRMVTRDGASLKLSSREFALLAAMVRSRGRPLSR 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +L+ A GR+ +R++DVQI+RLRR + + I+TVWG+GYV V DG+ Sbjct: 181 AQLIERALGRDAEVTDRAVDVQIARLRRALGDRADDAGLIKTVWGVGYVLVSDGA 235 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 109/233 (46%), Positives = 161/233 (69%), Gaps = 3/233 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++ Y +L+VDDD +LRALL +YL G++V ++ + E + + S +++LD+M+PG Sbjct: 1 MEQQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGL + R LR SN +P+IM+TAKGE+ DRIVGLE+GADDYI KPFNPRELLARI+AVL Sbjct: 61 KDGLEVLRDLRPHSN-VPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P+ + +A L++ +++ E + + L+S EF +LKAL+ +P P+ Sbjct: 120 RRAKGPENNNPNSGQINVA--GVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPM 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +RD LM G++++A +RSIDV IS+LR + + P H I+TVWG GY+FV Sbjct: 178 TRDDLMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFV 230 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 110/234 (47%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + I +VDD +R L+ +YLT++G+++ VA+ ++ LL R+ L++LD+M+PG Sbjct: 1 MSSSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CR +RS+SN P++ ++A+ E++D I+GLE+G DDY+ KPFNPRELLAR++A+L Sbjct: 61 EDGLSLCRHIRSRSN-TPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDE-PMPLTSGEFAVLKALVSHPREP 179 RR GA S E I FG++ LN RE+ D + L+ EF +L AL+ P E Sbjct: 120 RRATPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEI 179 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++RD+L+N GR +RSID QISRLRR +E DP +P YI+T WG GY FV Sbjct: 180 VTRDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_C7I0W4 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=C7I0W4_THIIN Length = 365 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 168/238 (70%), Gaps = 5/238 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVVDDD LRA+L YLT GF V A+ + M L ++ H ++LDLMLPGEDGL+ Sbjct: 129 RILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLMLPGEDGLA 188 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR---- 121 + R LR S+ +PI+M++A+GEE+DR++GLE+GADDY+PKPF+PRELLAR+RA+LR Sbjct: 189 LARELRRSSD-LPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLARLRALLRRAQP 247 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 A +LP A E + FG F L+ + R+ + + L+ EF +L+A+V+HP LS Sbjct: 248 TSAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAHPNRVLS 307 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 RD+L++ +G E A +RSIDV+++RLRR +E+DPA P Y++T+ G GY+F P G+ A Sbjct: 308 RDQLIDWLKGYERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIRGQGYLFNPSGAGA 365 >UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV27_9GAMM Length = 238 Score = 209 bits (532), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 106/236 (44%), Positives = 162/236 (68%), Gaps = 2/236 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 ++ + ILVVDDD+RLR+L+E +L + GF V V + + +D L L++LDL LP Sbjct: 3 IKSSAHILVVDDDLRLRSLVEAHLRQVGFTVDGVRDGQGLDHKLHGGEVDLIILDLGLPD 62 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGL IC+RLR + PI+++TA+G+EVDRI+GLE+GADDY+ KPF+PREL+AR++A+L Sbjct: 63 EDGLQICQRLRLTYDT-PILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAIL 121 Query: 121 RRQANELPGAPSQEEAVIAF-GKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 RR G +E I G F ++ +++ EP+ L+ +F L L+ H +P Sbjct: 122 RRTKPMNRGRQHADEPEICMKGAFVVDTRRQKILWRGEPLELSQADFQTLSTLIKHEGQP 181 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 LSR++LM L+RGR Y++ +RSID+QISRLR++++ ++I+TVWG GY+F+ + Sbjct: 182 LSRERLMLLSRGRTYASDDRSIDMQISRLRKLLDSKTDGAQHIRTVWGSGYMFLSE 237 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 109/230 (47%), Positives = 157/230 (68%), Gaps = 6/230 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + + L+VDDD+ +R LL YLT R V + QM + LT E+F ++VLDLMLPGEDG Sbjct: 29 SVRALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDG 88 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 LS+CR LRS S+ +PI+M+TA+ E DRI+GLE+GADDY+ KPF PREL+ARI+ +LRR Sbjct: 89 LSLCRWLRSTSD-IPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRV 147 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDE-PMPLTSGEFAVLKALVSHPREPLSR 182 +E S + I F ++LN R++ D +PL++ EF +L+ + P LSR Sbjct: 148 RDE----RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSR 203 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++L++ ARGR A +RSID+ +SRLR+ + +DP +P+ I+TV G GY+F Sbjct: 204 EQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLF 253 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 206 bits (523), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 111/236 (47%), Positives = 155/236 (65%), Gaps = 5/236 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ N IL+VDDD +R LL YL + G + AN QM +L + S L+VLDLMLPG Sbjct: 1 MENNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPG 60 Query: 61 EDGLSICRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 EDGL++CR LR+ + +P++M+TA+ EE DRI+GLE+GADDY+ KPF REL ARIR+V Sbjct: 61 EDGLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSV 120 Query: 120 LRRQANELPG--APSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSG-EFAVLKALVSHP 176 LRR A LP S+ + FG +KL+ R + M SG E+ +L+ + HP Sbjct: 121 LRR-ARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHP 179 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + L+RD+L+NL +GR+ +RSID+ ISRLR+ +++D PRYI+T+ GYVF Sbjct: 180 QRVLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVF 235 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/230 (46%), Positives = 152/230 (66%), Gaps = 2/230 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ILVV+DD R+L+ +YL G V + A+ +M R++ L+++DLMLP EDGLS Sbjct: 16 SILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGLS 75 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR++R++S +PIIM+TA+GE++DRIVGLE+GADDY+ KPFNPRELLARI AVLRRQA+ Sbjct: 76 LCRKVRARSQ-VPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 L + + +F ++++ RE+ + LTS EF +L+A LSR+ Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+ L +G + +RSIDV +SR+RR +E DPA I+TV GY+F P Sbjct: 195 LLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTP 244 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 111/237 (46%), Positives = 165/237 (69%), Gaps = 5/237 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +N IL++DDD +L ALL YL GF+VR++ + + + R++ L++LD+M+PG Sbjct: 1 MADNGDILIIDDDDKLCALLTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +GL + R +R+ S +P+IM+TAKGE+ DRIVGLE+GADDY+PKPFNPRELLARI+AVL Sbjct: 61 RNGLDVLRDIRAGSK-VPVIMLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVL 119 Query: 121 RR--QANELPGAPS--QEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 RR GAPS Q ++ G LN+ + +++ + L++ EF +L+AL+ +P Sbjct: 120 RRAETVGTSGGAPSAAQRAVLVEAGGLALNVSRHVLLVDEDELELSATEFRLLRALMENP 179 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L+RD+LM+LA GR++SA +RSIDV +S+LR ++ H + I+TVWG GY+FV Sbjct: 180 DTALTRDELMSLAWGRDFSAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMFV 236 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 202 bits (514), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 153/235 (65%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+VDDD +R L+ YLT+ G + VA+ QM L + L+VLD+MLPG Sbjct: 1 MDHINHILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPG 60 Query: 61 EDGLSICRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +DGL +CR LR+ + +PI+M+TA+ ++ DRI+GLE+GADDY+ KPF RELLARI AV Sbjct: 61 DDGLVLCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAV 120 Query: 120 LRRQANELPGAPSQEEA-VIAFGKFKLNLGTREMFREDEPMPLTSG-EFAVLKALVSHPR 177 LRR P E ++AFG+++L+ R + ED+ M SG E+ +L+ + HP+ Sbjct: 121 LRRTRMLPPNLLISETGRLLAFGRWRLDTTARHLLDEDDTMVALSGAEYRLLRVFLDHPQ 180 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 LSRD+L+NL +GR+ +RSID+ +SRLR+ + +D P YI+TV GYVF Sbjct: 181 RVLSRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDSREPTYIKTVRNEGYVF 235 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 152/232 (65%), Gaps = 4/232 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVR-SVANAEQMDRLLTRESFHLMVLDLMLPGED 62 ++IL++DDD L+ALL Y E +V ++ + + + ++VLD+MLP D Sbjct: 2 THRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDID 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +++R+ S +P+IM+TA+ ++ DRI+GLE+GADDY+ KPFNPRELLARI+AVLRR Sbjct: 62 GFETLKKIRAISQ-VPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR 120 Query: 123 QANELPGAP--SQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 AP S + FG +++ R + + + +T E +L AL+SH PL Sbjct: 121 ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +RD+L++LA GR++ +RSIDV ISR+R+ +E+DP+ PRYI+TVWG GY++ Sbjct: 181 TRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMW 232 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 4/232 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDD +R + +YL G + + +N +MD L F L++LD+M+PGEDGLS Sbjct: 10 ILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGEDGLSA 69 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 RRL + P P++M++A EE DR+VGLEIGADDY+ KPF+PRELLARI+A+LRR Sbjct: 70 ARRLSAGGGP-PVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSERR 128 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDE---PMPLTSGEFAVLKALVSHPREPLSRD 183 P A + + F + L+ TR++ RE + + LT+ EF +L A + PR L+R+ Sbjct: 129 EPLAGTLGGRKLGFAGWMLDTDTRDLVREADGAAKIALTTAEFKLLVAFLERPRFVLTRE 188 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +L+++ GR +R+ID Q+SRLRR +E+DPAHP+ I TV GY D Sbjct: 189 QLLDITSGRSAEVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAAD 240 >UniRef50_B8IVD0 Two component transcriptional regulator, winged helix family n=10 Tax=Alphaproteobacteria RepID=B8IVD0_METNO Length = 245 Score = 199 bits (507), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 157/240 (65%), Gaps = 8/240 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E IL+ DDD R+R +L RYL +GF+V + + M + L E L++LDL+L G Sbjct: 1 MSEPPHILITDDDPRIRQMLSRYLESEGFRVSTAESGTAMRKALASEKIDLVLLDLVLAG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGL + R +R+ S + IIMVT + + +D +VGLE+GADDYI KPF RE+LAR R+VL Sbjct: 61 EDGLELAREIRASSR-VGIIMVTGRSDIIDMVVGLEVGADDYIAKPFQLREVLARTRSVL 119 Query: 121 RR----QANELPGA--PSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALV 173 RR + E A PS VI F ++L++ RE+ E + +PLT+GEF +L A+ Sbjct: 120 RRLQPSASTETAKAVGPSSRAEVIGFEGWRLDISRRELMSPEGQEVPLTTGEFDLLAAMA 179 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 HP LSRD LM+L RGRE+ A++RSID Q+ RLRR +E DP +P+ I++V G GYVF Sbjct: 180 KHPGRVLSRDMLMDLTRGREWDALDRSIDAQVVRLRRKLEADPKNPKLIKSVRGAGYVFA 239 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 199 bits (506), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 103/231 (44%), Positives = 151/231 (65%), Gaps = 3/231 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +L+VDDD + +LL + + V N M L +E+ L++LD+ML GEDG S Sbjct: 3 HLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDGFS 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+++R+ S +P+IM+TA + DR+VGLEIGADDY+ KPF+ RELLAR++AVLRR A Sbjct: 63 LCQKMRAVSR-VPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTAE 121 Query: 126 -ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSG-EFAVLKALVSHPREPLSRD 183 E PS+ ++ F ++L++ RE+ D + L SG EF +L A H + L+RD Sbjct: 122 LEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTRD 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +L++LARG ++A +RSIDVQ+SRLR +E+DP P I+TV GY+F P Sbjct: 182 QLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTP 232 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 199 bits (506), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 105/229 (45%), Positives = 150/229 (65%), Gaps = 3/229 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+VDDD +R L+ YLT+ G +V V + M L S L+VLD+M+PG+DGL + Sbjct: 8 ILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDDGLVL 67 Query: 67 CRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 CR LR+ + P++M+TA+ +E DRI+GLE+GADDY+ KPF RELLARI+AVLRR Sbjct: 68 CRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLRRTRM 127 Query: 126 ELPGAPSQEEA-VIAFGKFKLNLGTREMFREDEPMPLTSG-EFAVLKALVSHPREPLSRD 183 P E ++AFG ++L+ R + +D + SG E+ +L+ V HP+ L+RD Sbjct: 128 LPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRVLNRD 187 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++L +GRE ERSID+ +SRLR+ + +D PRYI+TV GYVF Sbjct: 188 QLLSLTQGREAEMFERSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVF 236 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 199 bits (505), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 115/228 (50%), Positives = 148/228 (64%), Gaps = 4/228 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDDD +R LL R+L Q F+V +V +A + R + L+VLDLMLPGE G+ Sbjct: 30 ILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESGIDF 89 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA-N 125 R LR +S +PIIM+TA GEE DRI+GLE+GADDY+ KPFNPREL+ARIRAVLRR N Sbjct: 90 ARWLRGESQ-VPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGEN 148 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 E PG S + F + L R + +PLT GE+ +L AL+ P L+RD Sbjct: 149 ETPGRESSAR-LYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTRDM 207 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L++L RGR+ +R+IDV ISRLRR +E+D H + I+TV G GYV Sbjct: 208 LLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVL 255 >UniRef50_P31079 Protein petR n=50 Tax=Alphaproteobacteria RepID=PETR_RHOCA Length = 237 Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 156/234 (66%), Gaps = 10/234 (4%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+VDDD R+R LL+++L GF V + +A RLL+ F+L+VLD+M+PGEDGLS+ Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLLSGLEFNLIVLDVMMPGEDGLSL 68 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R LR++ PI+++TA+GE +RI GLE GADDY+PKPF P+ELL RI A+LRR Sbjct: 69 TRDLRTKMA-TPILLLTARGETRERIEGLEAGADDYLPKPFEPKELLLRINAILRR---- 123 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 +P A + ++ G + +L E+ + D+P+ LT+ E A+++ +H E + R +L+ Sbjct: 124 VPEAVTAGPKYLSLGPLRYDLDRGELSQGDQPVRLTATEAALMRIFAAHAGEVIGRTELI 183 Query: 187 -NLARGREYSAME----RSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 L R R SA E R++DVQI+RLRR +E DP PRY+QTV GLGY+ PD Sbjct: 184 EELGRDRSASAEEAAGDRAVDVQITRLRRKIEPDPREPRYLQTVRGLGYMLAPD 237 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 101/228 (44%), Positives = 145/228 (63%), Gaps = 2/228 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+V+DD + LLE +LT+ G + + R LT E++ L+VLD+MLPG DG Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALT-EAYDLIVLDIMLPGTDGF 66 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ICRRLR + P PI+MVTAK EEVD+++GLE+GADDYI KPF+ RE+LAR++A+ RR Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + ++ I GK + R++ E E + LTS EF +L HP SRD+ Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L++ G +YS +++ I+RLR +E DP+ PRY++TVWG+GY F Sbjct: 187 LLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 150/234 (64%), Gaps = 7/234 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR--ESFHLMVLDLMLPGEDGL 64 +LVVDDD + R LL+ YL + ++VR + + R + L++LD+MLP DG Sbjct: 14 LLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDTDGF 73 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++CR +RSQS P+PIIM+TA ++ DRIVGLE+GADDYI KP+NPRELLARI+A+ RR Sbjct: 74 TLCRSVRSQS-PVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRRMQ 132 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSRD 183 PGAP + + F F +++ R + + +P+ LTS +F +L+ H E L R Sbjct: 133 LGAPGAPVR---FLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETLDRA 189 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +LM RGR+ ++RS+DVQ+SRLR+ + +D P I+TV G GYVF D S Sbjct: 190 RLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADVS 243 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 100/233 (42%), Positives = 148/233 (63%), Gaps = 9/233 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+VDDD ++RA+L YL G + M ++++ + L++LDL LPGE+GL+ Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +R SN +P+IM+TA+ E DR+VGLE+GADDY+ KPF REL+ARI VLRR Sbjct: 88 LCREIRESSN-LPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRA 146 Query: 126 EL----PGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPL 180 ++ P AP E + F ++LN R++ ED +PL++ EF +L + HP L Sbjct: 147 DVRRPAPAAPGHE---VRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVL 203 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 R+ L+N ARGR+ +RSID+ +SRLR+ + +DP I+TV G GYVF Sbjct: 204 DREMLINTARGRDLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVFT 256 >UniRef50_Q5NY91 Response regulator n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY91_AZOSE Length = 236 Score = 193 bits (490), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/237 (42%), Positives = 149/237 (62%), Gaps = 3/237 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+VDD+ +R +LE Y QG+ ANA + + ++D+ +PG Sbjct: 1 MSPKATILIVDDEPGVREVLEEYFVAQGYAALCAANAGDAREIAAGSPVDVALVDISMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+ R LR + I+M+T+ G VDRIVGLE+GADDY+ KPF+PRELLAR+++VL Sbjct: 61 EDGLSLTRYLREHYARIAIVMLTSAGTVVDRIVGLEMGADDYVSKPFDPRELLARVKSVL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFRE-DEPMPLTSGEFAVLKALVSHPREP 179 RR + L + A + G+ +LG + E +P++ EF +LKALV +P Sbjct: 121 RRTS--LAASADLGAARVRVGRCVFDLGAHRLTDEVANDVPMSPLEFDLLKALVENPNRA 178 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 LSR++++NL++ R+ +RS+D+++ RLR+ +E DP HPR+I+TV GYVFVP G Sbjct: 179 LSRERILNLSQQRDMDPFDRSVDLRVMRLRKKIEPDPEHPRFIRTVRNAGYVFVPSG 235 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +L+VDDD +R L+ YL + G +V A+ QM L + ++VLD+MLPG Sbjct: 1 MDHVDHVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPG 60 Query: 61 EDGLSICRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +DGL +CR LR+ + PI+++TA+ +E DRIVGLE+GADDY+ KPF RELLARI+AV Sbjct: 61 DDGLVLCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAV 120 Query: 120 LRRQANELPGAPSQEEA-VIAFGKFKLNLGTREMFREDEPMPLTSG-EFAVLKALVSHPR 177 LRR P E A ++ FG ++L+ R + + SG E+ +L+ + HP+ Sbjct: 121 LRRTRMLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHPQ 180 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 LSRD+L+NL +GRE +RSID+ +SRLR+ + +D P YI+TV GYVF Sbjct: 181 RVLSRDQLLNLTQGREAELFDRSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVF 235 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 192 bits (488), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 107/241 (44%), Positives = 153/241 (63%), Gaps = 8/241 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVVDDD +RALL YL + GF+ S A+ +M R+L + L+VLD+MLPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGL++CR+LR++S +P+IM+TA ++ DRI+GLE+GADDY+ KPFNPREL+ARIR VL Sbjct: 61 DDGLTLCRKLRARSE-LPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVL 119 Query: 121 RRQANELP-----GAPSQEEAVIAFGKFKLNLGTREMFREDE-PMPLTSGEFAVLKALVS 174 RR A LP P I F + L+ R + D + L+ E+ +L+ + Sbjct: 120 RR-ARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLK 178 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +P +SRD+L++L +GR A +RSIDV +SRLR + ++ P+ I+TV G GY Sbjct: 179 YPNRVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLAT 238 Query: 235 D 235 D Sbjct: 239 D 239 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 104/231 (45%), Positives = 151/231 (65%), Gaps = 8/231 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L++DDD RL ALL YL GF VR+ A+ R L + L++LD+MLP DGL+ Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +R+ S +PIIM+TA+G+ DRIVGLE+GADDY+PKPF PREL+ARI+AVLRR Sbjct: 77 VCREVRADSR-IPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR--- 132 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 G EA + G ++N TR + + LT+ EF +L L + +SRD++ Sbjct: 133 ---GTRDDAEA-LRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRI 188 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 ++ RG ++ A +RSID+ +SRLR+ + +DP P +I+TV G+GY F+ G Sbjct: 189 LDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGG 239 >UniRef50_A7ICZ4 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A7ICZ4_XANP2 Length = 255 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 105/243 (43%), Positives = 154/243 (63%), Gaps = 11/243 (4%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + ++I+VVDD+ LR + YL QGF+VRS A+ +D LL E L+++D+ +PGE Sbjct: 9 ETGWRIIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVHMPGE 68 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL++ RR+RS + PIIM+TA + VDR+ GLE+GADDY+ KPF+ REL ARIRAVLR Sbjct: 69 DGLTLARRIRSAA-ATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLR 127 Query: 122 RQA---------NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP-LTSGEFAVLKA 171 R GA ++ G L++ + R D LT+ EF +L+ Sbjct: 128 RYTAVPPPTHEPPPANGAVPAGADLVPCGVVFLDMEAHCLVRRDGTREMLTAMEFDLLRV 187 Query: 172 LVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + +P L+RD+L++LA R+ +RSIDV+++RLR+ +E DPA P+ I+TV G+GY+ Sbjct: 188 FLQNPNRVLTRDRLLDLAHDRDNEPFDRSIDVRVTRLRKKIEADPAKPQAIKTVRGVGYL 247 Query: 232 FVP 234 FVP Sbjct: 248 FVP 250 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 149/228 (65%), Gaps = 1/228 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+ DD+ +R LL++YL + + V + + E+ +L T +++L++LDLM+P DG+ Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR+ +N +PI+M+TAK +EVD+IVGL IGADDYI KPF+ E++ARI+A++RR Sbjct: 65 VCRRLRNNTN-IPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLV 123 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 A +QE+ ++ F +++ + D+ + LT E +LK S+P + ++ +L Sbjct: 124 LGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQL 183 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 Y + ++ V I +LR+ +E DP++P++IQTVWG+GY FV Sbjct: 184 FRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFV 231 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 101/229 (44%), Positives = 148/229 (64%), Gaps = 3/229 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+VDDD +L L+ YLT G+ V S + + +L FH ++LD+M+P DG Sbjct: 12 QILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFE 71 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + ++LR QS+ +P++M+TA GEE DRIVGLE+GADDY+PK F+ RELLAR+RAV RR Sbjct: 72 MLKQLRKQSD-IPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRL 130 Query: 126 ELP-GAPSQ-EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + SQ ++ + G+ +++L R + +P+ LT E+ +L L P LSRD Sbjct: 131 SMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRD 190 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++ GR Y +RS+DV IS LRR + EDP +PR+IQTV +GY+F Sbjct: 191 QLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 98/227 (43%), Positives = 148/227 (65%), Gaps = 4/227 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I +VDD+ +++ L Y GF VRS A+Q+ RL+ RE ++LD+ LP DGL++ Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R +R+ S+ +P+I++T++ EE DRI+GLE+GADDY+ KPF+PRE+LAR++ VLRR Sbjct: 74 MRDIRADSD-VPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRR--TR 130 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P + + + F + L+L + EPM LTS EF +L ALV HP +SR+ L Sbjct: 131 AVADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDL 190 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +++ RE+ + +R++DV + RLRR +E DP P+ I T +GLGYVF Sbjct: 191 LDVMSSREWDSNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGYVF 237 >UniRef50_A6VRR3 Two component transcriptional regulator, winged helix family n=2 Tax=Gammaproteobacteria RepID=A6VRR3_MARMS Length = 243 Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 152/235 (64%), Gaps = 4/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 + + KILVVDD +R LE Y E+G+ V AE ++LL+ + F L++LD+ LPG Sbjct: 2 LMSDIKILVVDDSSVIRETLESYFAEEGYTVSGADTAEAAEQLLSEQEFDLILLDIRLPG 61 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGL++ R LRS+S + II+VT K +++DRI+GLE GAD+Y+ KPFN RE+LAR + ++ Sbjct: 62 KDGLTLTRELRSRSE-VGIILVTGKQDDIDRIIGLECGADEYVCKPFNAREVLARGKNLI 120 Query: 121 RRQAN--ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP-LTSGEFAVLKALVSHPR 177 RR N EL P +E G ++L+ R + + D + LT GEF +L AL ++ Sbjct: 121 RRVRNQRELAKKPIEEPVFRTIGTWQLDTSRRVLLKSDRSVSQLTEGEFQLLLALKANEG 180 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+RD+LM+ + R ++A +R+IDV I R+RR + EDP P+ I TV G+GY+ Sbjct: 181 VALTRDQLMDRIKNRTWNATDRTIDVLIGRIRRKLSEDPHCPQMIITVHGVGYLL 235 >UniRef50_A0LA52 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=A0LA52_MAGSM Length = 252 Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 106/232 (45%), Positives = 152/232 (65%), Gaps = 7/232 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+DD +R LL YLT+ GF ++ + ++ + R L+V+DLMLPGEDGL++ Sbjct: 14 ILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGEDGLTL 73 Query: 67 CRRLRSQSNP--MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 R LR+ + +PIIM+TA+ EE DRI+GLE+GADDY+PKPFNPRELLARI +V+RR Sbjct: 74 TRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVMRRAR 133 Query: 125 NELPGAPSQEEAVIA--FGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLS 181 +E P S V F + L++ +R++ D EP+ L+ E+ +L + +P+ L+ Sbjct: 134 SE-PVTKSDSSPVKGYRFSGWYLDIASRKLSAPDGEPITLSRKEYELLNIFLQNPQTLLN 192 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPR-YIQTVWGLGYVF 232 RD +M GRE S ER IDVQI RLR+ ++ D A P+ I+TVWG GY+ Sbjct: 193 RDAIMMRYGGREASPFERGIDVQIGRLRKRLQYDNADPQEMIKTVWGQGYML 244 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 189 bits (481), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 149/235 (63%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLP 59 M + I VVDDD +R LL+ YL + F V + + E + + L++LD+MLP Sbjct: 1 MTQAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G+DG ++CR LR+QS +P+IM+TA +E+DRI+GLEIGADDY+ KPFNPRELLARI+A+ Sbjct: 61 GQDGFAVCRSLRTQSQ-VPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAI 119 Query: 120 LRR-QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 LRR + E+ F +F L+ +RE++ +DE L+ ++ +L ++HP Sbjct: 120 LRRMEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGA 179 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L+R+ + RGR+ + ++R IDV +SRLR+ + ED P+ I+T+ G GY+ Sbjct: 180 VLTRELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILT 234 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 189 bits (480), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 103/230 (44%), Positives = 151/230 (65%), Gaps = 4/230 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+VDD+ LR L YL QGF++ +A +L E + ++D+M+PGEDGLS+ Sbjct: 13 ILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLSL 72 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R L ++ +P+I++TA+GE DRI+GLEIGADDY+ KPF PREL+ARIR+VLRR A Sbjct: 73 TRHL-IETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRR-AGR 130 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPM-PLTSGEFAVLKALVSHPREPLSRDKL 185 P A E+A F ++L+ R + D + +++ EF +L+A + HP++ L RD+L Sbjct: 131 AP-AVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRDRL 189 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++L +GRE +R++D Q+SRLRR +E D +P +IQTV G GY F D Sbjct: 190 LDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAAD 239 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 104/228 (45%), Positives = 149/228 (65%), Gaps = 4/228 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +LVVDDD +R LL YL++ +V A + M + L + L++LDL +PGEDG+ I Sbjct: 9 VLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGVQI 68 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R LR++SN +PI +V+ K +E DR++ LE+GADDY+ KPF+ RELLAR+RA+LRR Sbjct: 69 ARELRTRSN-LPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGAT 127 Query: 127 LPGAPSQEEA-VIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 P ++A F ++LN+GTR + P+ LT+GEF +L A ++ P LSRD+ Sbjct: 128 APATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRDQ 187 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ +R + +RSIDVQI RLRR +E DP+HP +I+TV G GYV Sbjct: 188 LLESSRLYD-DVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVL 234 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 146/233 (62%), Gaps = 5/233 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ ++ +++ YL ++G++V + N + +E L+VLD M+P G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R +R +S +PIIM+TAK EEVD+++G E G DDY+ KPF+ REL ARI+ +L+R Sbjct: 64 VLREIRKKSQ-IPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR--- 119 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 L EE V+ G L RE+F + +P+ LT EF +L+A + +P + SR +L Sbjct: 120 -LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 + A G Y ER+ID IS LR+ +E+DPA+P YIQTV+G+GY P G K Sbjct: 179 LEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGEK 231 >UniRef50_C4TUI5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Yersinia RepID=C4TUI5_YERKR Length = 235 Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 156/235 (66%), Gaps = 6/235 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 + +LV+DDD +R+LL Y T+ F+V S+ + E + L +ES L++LD+MLPG+DG Sbjct: 4 HTLLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGDDGF 63 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++CR+ R Q + +PIIM+TA +E D+++GLE+GADDY+ KPF+ RELLAR++A+LRR Sbjct: 64 TLCRKAR-QVSAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLRR-- 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSRD 183 N++ +P E + F +KL+L RE+ + + PL+ EF +L + HP + L RD Sbjct: 121 NQIVQSPGTEARFLCFNGWKLDLVRRELIDPQKQSEPLSGIEFTLLSLFLRHPNQILDRD 180 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 ++ + R RE + +ER IDVQISRLR+ +++ + ++T+ GY+ D S+ Sbjct: 181 QISEITRRRENNPLERGIDVQISRLRQRLQD--SQRLLLRTLRNQGYMLCCDVSR 233 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 145/232 (62%), Gaps = 3/232 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ++ IL+VDDD++L +L RYL + + V + N +++ L +++LD+M+P +G Sbjct: 2 SHNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHING 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C++LR S+ +P+IM++A+GE DRI GLE GADDY+ KPF PREL+ARI AV++R Sbjct: 62 FDLCKKLRKNSD-IPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRF 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 E + AV +G+ ++ + + + LT EF +L +V +P LSRD Sbjct: 121 --EHSEDTANNAAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILLSRD 178 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +L N G + A R++D+ +SRLR + +DP P+YI+TVWG GY+F+ D Sbjct: 179 RLYNELTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIAD 230 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 105/240 (43%), Positives = 148/240 (61%), Gaps = 9/240 (3%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 E ++IL+V+DD RL L + YL G V N + + E L+VLDLMLPGE Sbjct: 23 NEAWRILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGE 82 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGLSICR++R N PI+M+TA+ +++D+++GLE+GADDY+ KP PR LLARIRA+LR Sbjct: 83 DGLSICRKVRPSYNG-PILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLR 141 Query: 122 R---QANELPGAPSQEEAV-----IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALV 173 R Q +P E++ + F ++ RE + ED+ + LTS EF +L L Sbjct: 142 RVKEQGEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLA 201 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 S LSR+++ RG EY +RSIDV++SR+R + +DP HPR I+TV GY+FV Sbjct: 202 SSAGRVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFV 261 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 99/230 (43%), Positives = 148/230 (64%), Gaps = 4/230 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+V+DD +L L+ +LT +GF V+ + + + + S L++LD+MLPG+DG Sbjct: 10 KILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDGFG 69 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR + N P++M+TAK + D+++GLEIGADDY+ KP PR LLAR+ A+LRR Sbjct: 70 VCRDLRPEFNG-PVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRR--G 126 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +LP S+E+ I G +N +R++ +DE + LTS EF +L L E +RD + Sbjct: 127 DLPNQ-SEEKGEITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQNRDYI 185 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 GREY ++RS+DV+ISRLR+ + + P I+T+WG GY+FVPD Sbjct: 186 YKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPD 235 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 103/244 (42%), Positives = 152/244 (62%), Gaps = 11/244 (4%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ + I V+DD++ + LL YL GF+V + N + L+ + L++LDL LPG Sbjct: 1 MKSAFHIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDG SI RR+R +++VT +G+ VD++VGLE+GADDY+ KPF+ REL+AR++AVL Sbjct: 61 EDGFSIARRMRENWR-CGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVL 119 Query: 121 RRQA-NELPGA--PSQEEAVIA------FGKFKLNLGTREMFR-EDEPMPLTSGEFAVLK 170 RR A ++ P A S A +A F ++L+L R + + + + LT GEF +L Sbjct: 120 RRLAPDDAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLC 179 Query: 171 ALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 A HP LSRD L+ RGRE S +R+IDVQ+ RLR+ +E DP P+ +++V G GY Sbjct: 180 AFARHPGRVLSRDFLLEQTRGREASPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGY 239 Query: 231 VFVP 234 + VP Sbjct: 240 ILVP 243 >UniRef50_Q16CN7 DNA-binding response regulator PetR, putative n=12 Tax=Alphaproteobacteria RepID=Q16CN7_ROSDO Length = 233 Score = 186 bits (471), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 105/233 (45%), Positives = 154/233 (66%), Gaps = 5/233 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + +L+VDDD R+R LL+++L GF V + +A R+L F L+VLD+M+PGEDG Sbjct: 5 DAHLLIVDDDERIRTLLQKFLMRNGFLVTAARDAAHARRILLGLDFDLIVLDVMMPGEDG 64 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L+ R LR ++N +PI+++TAKG+ +RI GLE GADDY+PKPF P+ELL RI A+LRR Sbjct: 65 LAFTRALR-ETNAVPILLLTAKGDTDNRIEGLEAGADDYLPKPFEPKELLLRINAILRRV 123 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 L A + + V++ G + +L E+++ ++ + LT+ E ++K + E +SR Sbjct: 124 PEVLEDATAPK--VLSLGPIRYDLERGELWQGEDLVRLTATEMHLMKIFSASCNEAISRA 181 Query: 184 KLMN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 KL+ L R R A ER++DVQI+RLRR +E DP PRY+QTV G GY+ PD Sbjct: 182 KLVEELGRDRG-QAQERAVDVQITRLRRKIESDPKQPRYLQTVRGAGYMLAPD 233 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 186 bits (471), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 152/229 (66%), Gaps = 8/229 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+DD + +L + GF+ SV + MDR++ R+ F L+VLD MLPGEDG SI Sbjct: 15 ILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFSI 74 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CRRLR+ + +PI+M+TA E++DRI+GLE+GADDY+ KPFN RELLARI+++LRR + Sbjct: 75 CRRLRAACS-VPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASY- 132 Query: 127 LPGAPSQEEAV--IAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLSRD 183 A QEEA+ + F ++++ +R++ D + +T+ EF +L A +P + L+R+ Sbjct: 133 ---AHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTRE 189 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L+++ +ERSID ISR+R+ +E + P +I+TV GY+F Sbjct: 190 QLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLF 238 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 144/228 (63%), Gaps = 1/228 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+VDD+ + LL+ +L ++GF V + L RE + +VLD+MLP DG+ Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+RLRS+ + PI+MV+AK +E D+++ LE+GADDY+ KPF+PRELLAR++A+LRR Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 126 ELPG-APSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 E+ G E + +L E++++ E +PLT E+ +L L+ HP L+R++ Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ G ++ R +DV I +LR +E++P P+YIQT+ G GY F Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/233 (42%), Positives = 148/233 (63%), Gaps = 10/233 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+VDDD +R LL+ YL+ GFQV + A+ + L L++LD+MLP EDG S Sbjct: 26 SILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGFS 85 Query: 66 ICRRLRSQSNP--MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +CR +R +PIIM+TA +E DR++GLE+GADDY+ KPF+PREL ARI+A+LRR Sbjct: 86 LCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRS 145 Query: 124 --ANELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPL 180 PG+ AV+AF ++L+ + +F R+ E + L+ +FA+LK + HP++ L Sbjct: 146 EFGQAAPGS-----AVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHPQQIL 200 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 RD + N RGRE ++R +D+ +SRLR+ + + PR I+TV G GY+ Sbjct: 201 DRDTIGNATRGREPMPLDRIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGYLLA 253 >UniRef50_B1ZLF1 Two component transcriptional regulator, winged helix family n=23 Tax=cellular organisms RepID=B1ZLF1_METPB Length = 291 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 111/242 (45%), Positives = 152/242 (62%), Gaps = 13/242 (5%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I VVDD+ RA++ YL GF V + L + L+VLDL +P EDGLSI Sbjct: 52 IAVVDDEADARAMVGDYLRLHGFDVALCEGGRALRAHLQIRTPDLIVLDLNMPEEDGLSI 111 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R ++++S P+PIIM+TA +DR+VGLE+GADDY+PKP REL+AR+R+VLRR Sbjct: 112 VRDMKARS-PIPIIMLTATASPIDRVVGLELGADDYLPKPCELRELVARVRSVLRRAQGA 170 Query: 127 LPGAPSQEEA---------VIAFGKFKLNLGTREMFREDEPM--PLTSGEFAVLKALVSH 175 P P+Q I FG L L + R+D + PLT EF +LKA H Sbjct: 171 PPPPPAQPTPAPEPAACARTIRFGTKWLELDALRL-RDDAGVEQPLTRSEFDLLKAFADH 229 Query: 176 PREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 P+ LSR++L++LA R+ A +R+IDV+I+R+R+ VE DPA+PR+I+TV GLGY+F PD Sbjct: 230 PKRALSRERLLDLADARDPDAFDRAIDVRINRIRKKVEPDPANPRFIRTVRGLGYIFRPD 289 Query: 236 GS 237 G Sbjct: 290 GD 291 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 144/234 (61%), Gaps = 3/234 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+VDDD + LL YL+ F+V + +A+ M L R + +L+VLD+MLPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL++ R +R +S +P+IM+TA+ DRI+GLE GADDY+ KPF PREL+ARI VL Sbjct: 89 TDGLTLSREIRERSQ-IPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVL 147 Query: 121 RRQANELPGAPSQEEA-VIAFGKFKLNLGTREMFREDE-PMPLTSGEFAVLKALVSHPRE 178 RR AP+ + V+ F ++L+ R + + L++ EF +L + PR Sbjct: 148 RRSQGAKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRR 207 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SRD+LM ARGR A ERSID+ +SRLR+ + +DP P I+TV G GY+F Sbjct: 208 LFSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 154/236 (65%), Gaps = 5/236 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +ILV DDD + L+ YL ++ F+VR + M ++L + ++VLDL+LP Sbjct: 1 MSSEGQILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGL +CR LR++SN +PII++++KGE++DRI+GLE+GADDY+ KPF+PRELLARI++VL Sbjct: 61 EDGLQLCRELRARSN-LPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVL 119 Query: 121 RRQANELPGA--PSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPR 177 RR A LP + E+ F + ++ +R +F + LT GE A+L+ + HP Sbjct: 120 RR-ARSLPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPN 178 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 LSRD++++L G++ R+ID+Q+SRLR+ + ++ P I+TV GYVF Sbjct: 179 RVLSRDQILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFC 234 >UniRef50_A9DQD6 Probable two-component response regulator protein n=2 Tax=Rhodobacteraceae RepID=A9DQD6_9RHOB Length = 247 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 153/235 (65%), Gaps = 8/235 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDDD+R+R LL R L G++V +A+ + +F L+ LDL L ++GL Sbjct: 5 KILVVDDDVRIRTLLRRCLEGDGYRVVEAESAQSVRDAFGAAAFDLVTLDLNLGADNGLD 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 I R LR +++ +PI+MVT K + +DR+VGLE+GADDY+ KPF+ RE+LAR+R+VLRR + Sbjct: 65 ILRELR-RTHDVPIVMVTGKDDVIDRVVGLELGADDYLTKPFHVREVLARVRSVLRRSSR 123 Query: 126 ELPGAPSQEEA------VIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPRE 178 +P + ++ ++ K+ L + R+ E LT+ +F +L A + + ++ Sbjct: 124 PMPAETTDRDSDTSDAPWLSLDGLKIRLDRMLLVDRQGEDCDLTTADFKLLAAFLKNAKK 183 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 PLSRD+LM+L G+E++ ++R+ID Q++RLR+ VE D + P I+TV G+GY+ Sbjct: 184 PLSRDRLMDLIDGQEWAPLDRTIDNQVARLRKKVERDASRPLLIKTVRGIGYILT 238 >UniRef50_Q1GLX1 Two component transcriptional regulator, winged helix family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLX1_SILST Length = 238 Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/233 (43%), Positives = 149/233 (63%), Gaps = 4/233 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E +ILV DD+ LR +L YL E+G++V NA+ M + ++ ++VLD+ +PG D Sbjct: 6 EAKRILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTD 65 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL+ R LR S +P+IM++A GE VDRIVGLE+GADDY+ KP + REL ARI+A LRR Sbjct: 66 GLTALRTLRVNST-IPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRR 124 Query: 123 Q--ANELPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREP 179 Q A E + + FG +L+L ++F E E + +TS EF++L+ + Sbjct: 125 QGFAGEESAQRDRMTGTVPFGMCRLDLDGAKLFGESGEEIAITSMEFSLLRVFAQNRGRV 184 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+RD+L+ A R + +RSID++ISRLRR +E++P P I+TV G+GY+F Sbjct: 185 LNRDQLLEQAHDRGWEHFDRSIDLRISRLRRKIEQNPTKPETIRTVRGIGYIF 237 >UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax=Proteobacteria RepID=Q2NZ71_XANOM Length = 242 Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 104/238 (43%), Positives = 149/238 (62%), Gaps = 13/238 (5%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +LVVDDD LR L+ +L+ G+QV N +M ++ + L+VLD+M+PGEDGLS Sbjct: 11 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSA 70 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--QA 124 R L S+ +IM++A G + DRI+GLE+GADDY+ KP NP ELLAR+RA+LRR + Sbjct: 71 ARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQSS 130 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEP----MPLTSGEFAVLKALVSHPREPL 180 NE Q V F ++L++ R++ +P + L+ GEFA+L+ V HP+ L Sbjct: 131 NE---QSDQRGNVYEFAGWRLDVVRRDLR---DPTGIFINLSDGEFALLRTFVEHPQRVL 184 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 SRD+L+ ARGR+ +R+ID QISRLRR + E H I+TV GY+ +P S+ Sbjct: 185 SRDQLLECARGRDTDVYDRAIDSQISRLRRKINE-RVHTELIRTVRNEGYMLLPSVSR 241 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 148/230 (64%), Gaps = 4/230 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N+ ILVV+DD R L YL ++G++V V + + M ++ ++++ L++LD+ LPG DG Sbjct: 3 NHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L + R +R QS + +IMVT K +EVDRIV LE+GADDY+ KPFN RELLAR + +LRR Sbjct: 63 LQLLREIRHQSE-VGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLSR 182 + S++E +F + L++ R +F D + LT GEF +L S P ++R Sbjct: 122 LSAREA--SEDENQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTR 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 D L++ R+++ +R++DV + RLRR +E DP PR+I TV G+GYVF Sbjct: 180 DNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVF 229 >UniRef50_A0L527 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L527_MAGSM Length = 250 Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 99/240 (41%), Positives = 149/240 (62%), Gaps = 5/240 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + ++IL+V+DD RALL Y G++ + +A M R+L L++LD+ LPG Sbjct: 1 MPQRHEILIVEDDKVTRALLSGYFNNAGYRTHAAEDARSMQRVLNGGGIDLVLLDINLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGLSI + LR++S + II+V+++ EEVDRI+GLE+GADDY+ KPFN RELLAR++ +L Sbjct: 61 RDGLSITQNLRAESAELGIILVSSRSEEVDRIIGLELGADDYVVKPFNERELLARVKVLL 120 Query: 121 RRQANELPGAPS----QEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSH 175 RR A S E F + L+ R+++ D + LT+GEF +L A V+ Sbjct: 121 RRIDLIKHYANSCRDLDELGSYRFDHWTLSHSARQVYHRDGRQVELTNGEFRLLLAFVNR 180 Query: 176 PREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 SRD+L++ RE+S +R+IDV ++RLRR +E D P+ + T+ G+GY F P+ Sbjct: 181 AGRAQSRDQLLDAVSNREWSPNDRTIDVMVNRLRRKLEVDARDPKLLITIHGVGYQFTPE 240 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 150/235 (63%), Gaps = 6/235 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP-GE 61 + +IL+VDDD RL + ++LT +G+ + M R L F L++LDL P GE Sbjct: 2 QTQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNGE 61 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG+++ R +R++ + P++M++ + E VD+I+ LEIGADDY+ KPF PRELLARIR VLR Sbjct: 62 DGITLARDIRTRYD-TPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLR 120 Query: 122 RQANELP--GAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPRE 178 R A P A E+ +I F ++L+LG RE+F +DE + LTS EF +L ALV Sbjct: 121 R-ARPTPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLLAALVQRAGR 179 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L+RD++++L R ++ +RSIDV I +LRR + ++ + I+TV G GYVF Sbjct: 180 VLTRDQILDLIANRHWTPFDRSIDVLIGKLRRKLNDNNRANQIIKTVRGAGYVFT 234 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 142/239 (59%), Gaps = 5/239 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+LVVDD+ + LLE L + F V++ N ++ + +++LDLMLP G Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ-- 123 + +R+R N P+I++TAK E D++ GLE+GADDY+PKPF+PRE++ARI AVLRR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 124 ---ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 +N+ AP + + G F ++ ++ D+ + LT EF +++ LV H + L Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 SRD+L+ G +YS R +D+QI+ LR +E DP P+Y++T+ G GY F G A Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDDA 241 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 143/232 (61%), Gaps = 7/232 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + ILVVDDD + LL +L F V++ +AE+ + + MVLD+M+PG Sbjct: 1 MSGDNTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 ++G +CRR+R++S P+PI+ ++A+ ++VD+I GL +G DDYI K +P E++AR++AVL Sbjct: 61 QNGFELCRRIRAES-PVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A P EE V+ +G+ +LNL TRE+ + + LT EF +L+ HPR Sbjct: 120 RRSATRRP----MEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + D+L LA+ + +I V +SRLR +E DP P+++ VWG+GY F Sbjct: 176 TYDQL--LAKFWDGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRF 225 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/225 (44%), Positives = 144/225 (64%), Gaps = 6/225 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDD+ L L L ++GFQV + ++ + F L+VLDLMLPG DGL+I Sbjct: 4 ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTI 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CR +R+ + PIIM+TAK +++D+I+GLE+GADDYI KPFN REL+ARIRAVLRR Sbjct: 64 CREVRA-AGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE-- 120 Query: 127 LPGAPSQEEAV-IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 A Q+ A + G L+ R P+ LT+ E+ +L+ L HP +R +L Sbjct: 121 --AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQEL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 ++L G +++ ER++DV + R+R +EEDP+ PRY++T WG+GY Sbjct: 179 LDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGY 223 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 144/229 (62%), Gaps = 3/229 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDD+ +R +LE LT G++V + +N E+ + +E L+VLD+M+P DG Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+ LR +S+ +PIIM+TA GE DRI GLEIGADDY+ KPF+P+EL ARIR+VLRR Sbjct: 67 VCQELRKESD-VPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +I+ G K++ R++++ +E + LT EF++L+ LVS EP SR + Sbjct: 126 ITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 186 MNLARGR--EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G E R +DV ISRLR +E+DP++P I T G GY+F Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 145/236 (61%), Gaps = 3/236 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + +L+V+DD RL L YL G +V + + E L++LDLMLPGED Sbjct: 6 HTWHVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGED 65 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G SICR +R + + PI+M+TA+ ++ D I GL+ GADD++ KP +PR LLARI+A+LRR Sbjct: 66 GFSICRSVRDRYDG-PILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRR 124 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 +E P P+ E + FG ++ RE + ++ + LT EF +L LV++ LSR Sbjct: 125 --SEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSR 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +++ RG Y +RSIDV+ISR+R + +DP HPR I+TV GY+FVP+ ++ Sbjct: 183 EEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQ 238 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 146/231 (63%), Gaps = 8/231 (3%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++++KILVVDD+ ++R LL L ++ +Q + +N ++ L+ R++FHL++LD+M+P Sbjct: 3 EQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEM 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL+ C R+R SN +PIIM+TA+ +E+DRI GL+IGADDYI KPF+PRELLARI A LR Sbjct: 63 DGLTACMRIREFSN-VPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + A + GK +L+ +R + +P+ LT EF +L V + + S Sbjct: 122 RSHR----FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFS 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R++L++ G +Y R++D I LR + E IQTVWG+GY F Sbjct: 178 REQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_B6R185 Response regulator in two-component regulatory system with EnvZ, OmpR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R185_9RHOB Length = 239 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 147/234 (62%), Gaps = 5/234 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M N +L+VDDD + +L +L ++G+ V + +AE+ LL LMVLD+MLPG Sbjct: 2 MLSNKTLLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPG 61 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 E+GL++C+R+R Q++ MPII+++A + +RIVGLE+GADDY+ KPFNPREL ARI A+ Sbjct: 62 ENGLTLCQRVR-QTSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIF 120 Query: 121 RRQAN-ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPM-PLTSGEFAVLKALVSHPRE 178 RR + E AP + F +KL+ TR + D + L+S EF L V P++ Sbjct: 121 RRTEDVETAAAPKAQR--FEFSGWKLDEATRHLTAPDGVLVHLSSSEFDALLTFVKSPQK 178 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 P+SRD L + RG + + +RSID+ ISRLR+ + + + +I TV GY+F Sbjct: 179 PISRDTLGRVLRGAKVDSHDRSIDILISRLRKKLAQTDPNTDFITTVRHQGYLF 232 >UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNC3_CLOBO Length = 231 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 146/232 (62%), Gaps = 4/232 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +K+LV++D++ + ++ L +Q F+V + E + +T E+ +++LD+MLPG Sbjct: 1 MNHKHKVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C LR + IIM+TA G++VD+I GLE GADDY+ KPFNP EL AR+ +++ Sbjct: 61 IDGFKVCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLI 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + ++ FK++L ++ ++ +E + LT EF +LK + + L Sbjct: 121 RRMS----FSNDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISL 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SRDKL++LA G + + +DV I RLR +E+DP++P+Y+QTVWG GY++ Sbjct: 177 SRDKLLDLAWGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGYIW 228 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/235 (42%), Positives = 142/235 (60%), Gaps = 14/235 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILV +DD +R L L +G+ V + + + R+ SF L +LD+M+PG +G Sbjct: 5 RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR + + IIM+TAKGEE+D+++GLE+GADDYI KPF EL ARI AVLRR Sbjct: 65 VCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSRR 124 Query: 126 ELPGAPSQEEAVIAFG-------KFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 PGA + + +A G ++ LGTR FR LT+ E +L+A HP E Sbjct: 125 TAPGAAGELPSTLAIGPATIDRKTYRGCLGTRN-FR------LTAREMKLLEAFYRHPDE 177 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L R+ L+NLA G +Y R++D I++LR+ +E DPA P+ I TV G+GY +V Sbjct: 178 ALPRNTLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYV 232 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 142/227 (62%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+++D + AL+ L + V ++ + L T ++F L++LD+MLP DGL Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+ LR+++ PI+M+TAK E DR+VGLE GADDY+ KPF+ REL AR++A LRR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + Q + + FG+ ++ R + D+ + LT+ EF +L + SHP + SR+KL Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ G ++S E +++ I+RLR +E D ++P+Y+ TVWG+GY F Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 146/234 (62%), Gaps = 5/234 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 ++E+ +L+VDDD +R LL +L +G +V + E+M +++R + L++LD+MLPG Sbjct: 77 LKEDAHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPG 136 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 + G+ IC+ +R S +PIIM+TA + D+I+GLEIGADDY+ KPF+PRELLARIRAVL Sbjct: 137 KSGIEICQDIRRHSR-VPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVL 195 Query: 121 RR-QANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPRE 178 RR + N P P F + L+ R + D + LT+ EF +L+A V + Sbjct: 196 RRLENNRAPSRPVTHS--YRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQH 253 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 LSRD+LM +A + +RS+D+ ISRLRR + +D P+ I T+ GY F Sbjct: 254 ILSRDQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQF 307 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 97/231 (41%), Positives = 148/231 (64%), Gaps = 6/231 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLT-RESFHLMVLDLMLPGEDGL 64 ++L+V+DD +R ++E L+ +G + +V + E LL+ + F L++LD+MLPG DG+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 65 SICRRLRSQSNP---MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 S+CR LR +P +P++M+TA+ +E +VGLE+GADDYI KPF+PR+L +R+RA LR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 RQ +P Q + + F +++L R + E + LT+ EF VL L S+P S Sbjct: 123 RQRMNAQASPEQRK--LEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R+++M+ G E+ RS DV I LR+ +E DP +PRYIQTV G+GY F Sbjct: 181 REQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 152/237 (64%), Gaps = 9/237 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRE-SFHLMVLDLMLPGEDG 63 +IL+++DD L L+ YL ++V ++ +D L +E + L++LDLMLP DG Sbjct: 4 QILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDG 63 Query: 64 LSICRRLR----SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 + +C+++R SQ+N +PI+M+TAKG+ DR++GLE+GADDYI KPF PRELLARIRAV Sbjct: 64 MQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAV 123 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR +E P + + FG+ + + E+ +D+P+ LT+ +F +L +H + Sbjct: 124 LRR--HEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKV 181 Query: 180 LSRDKLMNLARGREYS-AMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 L+R++L + S ++R+IDV ISRLR ++E++P P+ I TV G+GY F D Sbjct: 182 LNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 179 bits (454), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 145/227 (63%), Gaps = 3/227 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDD+ + L+ L + +V + E+ + + +++LD+MLP DGLS Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+++R SN +PIIM+TAKG+++D+I+GL+ GADDYI KPFN E+ AR++A+LRR N Sbjct: 73 VCQQIREFSN-VPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR--N 129 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Q+ VI G K++ +R ++ D+ + LT+ EF +L+ L +P + SRD L Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G++Y+ R++DV + RLR +E +P+ P+Y+ T WG+GY F Sbjct: 190 LKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 151/235 (64%), Gaps = 8/235 (3%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++ +L+V+DD+ + +L LTE G V N +M+ L + F L+VLD+MLPGE Sbjct: 24 RQGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGE 83 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 +GLSICRRLR+ +N +P++M+TA GEE+DRI GLEIGADDY+ KPF+ REL ARIRA+LR Sbjct: 84 NGLSICRRLRAHTN-VPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLR 142 Query: 122 RQANELPGAPSQEE--AVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPRE 178 R A AP + + V+ F ++L+ R++ + + T+ EF +L A +P Sbjct: 143 RTAY----APDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGR 198 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 LSR++L+++ +ERS+DV +SR+R+ +E+D P ++TV GY+F Sbjct: 199 VLSREELLSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFT 253 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 149/234 (63%), Gaps = 6/234 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH--LMVLDLMLPGEDG 63 KILV+DD++ +R L E L +GFQV++ N + ++ SF L++LDLMLP G Sbjct: 3 KILVIDDELAIRDLTELVLKREGFQVKTAENGRR--GIIELNSFRPDLVLLDLMLPDCSG 60 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C+ + QSN +P+IMV+AK E +D+++GLE+GA+DYI KPF+ REL+ARI+ VLRR Sbjct: 61 YDLCKEIVKQSN-IPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRY 119 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + A + + G+ ++N T+ + + + LT+ E+ +L+ L P++ +RD Sbjct: 120 EHN-DEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRD 178 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +L+ + G +YS RS+D+ I RLR+ +EED P+Y++T++G GY D + Sbjct: 179 ELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDST 232 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 135/226 (59%), Gaps = 2/226 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ILVVDD+ + L+E YL +GF + N + R + E L +LD+MLP DG + Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+R+R N P+IM+TAK EE+D+I GL +GADDYI KPF P EL+AR++A LRR Sbjct: 64 LCQRIRENHN-FPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P+QEE +IAF L++ T E ++ + LT EF++L L S+ +S ++L Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182 Query: 186 MNLARGREY-SAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + G +Y + ++ V I LR + HP+YI+TVWG+GY Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGY 228 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 145/229 (63%), Gaps = 7/229 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+LVVDDD + L++ Y +GF+V +V + + + RE+ +++LD+MLPG+DGLS Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR+ +PIIM+TAKGEE DR++GLE+GADDY+ KPF+PREL+ARI+AVLRR Sbjct: 66 LCRRLRA-VRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P Q + + ++ R++ + +T EF +L L +P+ +R++L Sbjct: 125 ADPATNWQ----LKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREEL 180 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G +Y +R++DV I RLR + P Y+QTVWG+GY F P Sbjct: 181 LGAVWGYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYKFTP 227 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 153/229 (66%), Gaps = 5/229 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I+VV+DD RALL Y ++G++V + NA+ + + + +E L++LD+ LPG+DGL++ Sbjct: 11 IMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDGLTL 70 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R LR+ S + II+VTA+ +E+DRIVGLE+GADDY+ KPFNPRELL R R +L R A + Sbjct: 71 TRELRAASR-VGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVA-Q 128 Query: 127 LPGAPSQE--EAVIAFGKFKLNLGTREMFREDEPMP-LTSGEFAVLKALVSHPREPLSRD 183 G+ ++E + F + LN R++ D + L GEF +L AL+SH + LSRD Sbjct: 129 CAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLMALLSHAGQVLSRD 188 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +LM+ RE++ +R++DV + R+RR ++++PA PR I T G GY+F Sbjct: 189 QLMDAIHDREWTPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAGYLF 237 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 100/233 (42%), Positives = 148/233 (63%), Gaps = 6/233 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+V+DD RL L + YL + G V + + R + E L+VLD+MLPG DGL+ Sbjct: 11 RILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGLT 70 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +R + PI+M+TA+ E++D+++GLE+GADDY+ KP PR LLARIRA+LRR N Sbjct: 71 VCREVRPHYHS-PILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129 Query: 126 ELPGAPSQE-EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 APS+E + FG+ ++ G R + E + TS E+ +L L S+ LSR+ Sbjct: 130 ----APSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRED 185 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 + RG EY +RSIDV+ISR+R + +DP +P+ I+TV GY+FV +G+ Sbjct: 186 IFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEGN 238 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 147/234 (62%), Gaps = 7/234 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++ +ILVVDDD +R LL RY+ Q F+V A+ ++ + L E L+VLD+MLP Sbjct: 32 EQTPQILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDG 91 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 GL CR LR++ NP+PII++TA E+VDRI+GLE+GADDY+ KPFNPREL+ARIRAVLR Sbjct: 92 SGLDACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLR 151 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPL 180 R+ +E P AP F F + R + + LT EF +L+ + P L Sbjct: 152 RR-SETP-APVGASRAYRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQVFLDRPGRVL 209 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPA-HPRYIQTVWGLGYVFV 233 SRD+L++ RGR +RSIDV ISR+RR + DP+ R ++TV GY FV Sbjct: 210 SRDQLLDFTRGRS-DTFDRSIDVLISRVRRKL--DPSGTARLLKTVRNGGYQFV 260 >UniRef50_B8JG70 Two component transcriptional regulator, winged helix family n=2 Tax=Cystobacterineae RepID=B8JG70_ANAD2 Length = 238 Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 145/237 (61%), Gaps = 7/237 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E +++L V+DD RL AL RYL G V VA+ + + +++LDLMLP + Sbjct: 7 ERFRVLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRKS 66 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL +CR LR++ P+PIIM+TA GEE DR++GLE GADDY+ KPF+ RELLAR+RA++RR Sbjct: 67 GLEVCRELRARL-PVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRR 125 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 L G P + VI G +L+ R P+ LT+ EF +L+ L L+R Sbjct: 126 GRGSL-GPPRE---VIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTR 181 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV--PDGS 237 ++L++L +G A +RSID ISRLR + +DP P ++TV G GYV P+G+ Sbjct: 182 EQLLDLTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVLAAGPEGA 238 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 143/228 (62%), Gaps = 5/228 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 I +V+DD L L+ YL F V+ +A + + R+ L++LDLMLPG DGL Sbjct: 49 NIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQ 108 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA- 124 +CR LR +S +PI+M+TA+ + D+++GLE+GADDY+ KP PR LLAR+R +LRR + Sbjct: 109 LCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSV 168 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 NE P + +I G +++L R + E + L+SGE+ +L L + E ++RD+ Sbjct: 169 NE----PRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDR 224 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ RG E++ +RS+DV IS+LRR +++ R I+TVWG GY+F Sbjct: 225 ILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >UniRef50_C4ZP42 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C4ZP42_THASP Length = 242 Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/236 (39%), Positives = 145/236 (61%), Gaps = 5/236 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 ++ + +LVVDDD+ +A + Y +++G++V + E R L + L++LD+ LPG Sbjct: 5 LESHVTLLVVDDDLVAQARMNAYFSKEGYRVLLAGDGESFWRQLAQGEVDLVLLDINLPG 64 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGLS+ R LR++ + II+VT++ ++VD+IVGLE+GADDY+ KPFNPRELLAR++++L Sbjct: 65 QDGLSLARELRARDASIGIILVTSRNDDVDKIVGLEVGADDYVTKPFNPRELLARVKSLL 124 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREP 179 RR A P++ + F + L L R + R + + LT GEF VL LV HP E Sbjct: 125 RRSATR----PAETADSLRFAGWVLELSRRRLRDRAGQDVALTRGEFEVLALLVRHPGEI 180 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 L RD+L G ++S +RS+DV + RLR +++ I T+ G GY D Sbjct: 181 LDRDRLSRAVSGHDWSPQDRSVDVLVRRLRAKLDDPARTDSLIATIRGEGYRLAAD 236 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 93/229 (40%), Positives = 143/229 (62%), Gaps = 4/229 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL++DDD L L+ R+L+ +GF V + L ++ F L V+D+M+PG++G+ + Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R LR QS+ +P+IM+TA+GEE+DRI+GLE+GADDY+PKP NPREL ARIRAVLRR + Sbjct: 63 LRELR-QSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQ 121 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 QE FG + + +R + EP+ LT+ E+ +L L+ H E +S+ +L Sbjct: 122 QESDDKQE---TRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELS 178 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 A G+ + +R++DV I LR+ + I+TV +G++FVP+ Sbjct: 179 QAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 144/234 (61%), Gaps = 3/234 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +KILVVDD+ + +++ YL + GF V + + + + + E+ HL+VLDLMLP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C R+R+ S+ +PIIM+TAK EE ++I G+ +GADDY+ KPF+ REL+ R+RA+L Sbjct: 61 MTGEEVCNRIRAVSS-VPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + +P + G ++++ + ++ + LT+ EF +L +S+P + Sbjct: 120 RRAYRDF--SPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVF 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR+KL+ A G Y +R++D I +R+ +E + P YI TV+G+GY F+P Sbjct: 178 SREKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_A1SYE4 Two component transcriptional regulator, winged helix family protein n=4 Tax=Proteobacteria RepID=A1SYE4_PSYIN Length = 246 Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 146/237 (61%), Gaps = 5/237 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+VDD++ +R L+ L + G+ +VA+ M + + F L+++DL L EDGL + Sbjct: 9 ILIVDDEVDVRILVSDVLNQAGYPCVAVADGNTMFGEMKKALFSLLIIDLRLKNEDGLVL 68 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA-- 124 R +R SN +PI+M+T KG E DRI+ LEI ADD++ KPFN REL+AR+ A+ RR Sbjct: 69 ARSVRENSN-IPILMLTGKGSETDRILSLEIAADDFLMKPFNIRELVARVNALQRRAVMT 127 Query: 125 -NELPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLSR 182 N P S ++FG + L+L RE+ E LT GEF +L++L + P+ +SR Sbjct: 128 INNDPADLSDSHECLSFGHWILDLSARELRNSSGEVTLLTYGEFTLLESLATRPKRVISR 187 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 ++L+ RG E +R++DV ISRLR+ +E + PRYI+T G+GY F + SK+ Sbjct: 188 EQLLEYLRGAEGDTFDRTVDVLISRLRQKLEINSRSPRYIRTERGIGYSFSENVSKS 244 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 176 bits (446), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 136/229 (59%), Gaps = 5/229 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDDD + +++RYL GF V A+ R+ L+VLDLMLPG DG+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + RRLR+ P+P+IM+TA+ +E DRI GLEIGADDY+ KPF+PREL R+++VLRR Sbjct: 117 VFRRLRAH-RPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +PGA E V+ G ++ R R P+ LT EF +L L+ P +R +L Sbjct: 176 TVPGA---EAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGEL 232 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G Y ++ V I RLR +E+DP PR + TVWG+GY + P Sbjct: 233 LEHVWGWSYGDPS-TVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 139/232 (59%), Gaps = 3/232 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANA-EQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+D+ +R + +RYL + ++V + N E D LT + L++LDLM+P +DG Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQP-DLIILDLMMPKKDGW 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C +R QSN +PIIM+TAKGEE DRI+GL +GADDY+ KPF+PREL+ R++ +LRR Sbjct: 62 ELCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A VI F K+ TR + + + LT EF VL + HP++ SR + Sbjct: 121 QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L+ L + ++ V +SRLR +E+ +I TVWG+GY F P+G Sbjct: 181 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNG 232 >UniRef50_Q488T3 DNA-binding response regulator n=4 Tax=Alteromonadales RepID=Q488T3_COLP3 Length = 246 Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 136/234 (58%), Gaps = 6/234 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Y IL+V+DD+ L + YLTEQGF V VA + + ++ + + +++LD+MLPG +G+ Sbjct: 2 YNILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTTDIVLLDVMLPGLNGI 61 Query: 65 SICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 +CR +R QS +PIIM+TA+ +E D ++GLE GADDY+ KP PR LLARI R Sbjct: 62 EVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRALLARIN----R 117 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Q + A + FG+ +N + + + + + L++ FA L L H + R Sbjct: 118 QLSHNDKVEPDLNAPLIFGELTINQEAKRVLYQGKEVELSTSLFAFLTYLAQHAGNVVDR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 D + + REY +R DV +S LR++ +DP P+ +T+WG GY+FV D Sbjct: 178 DSVFKALKKREYDGQDRRFDVMLSTLRKLFNDDPQKPQKFKTIWGKGYLFVSDA 231 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 141/226 (62%), Gaps = 6/226 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 YKILVV+DD +++ L L + + + E RE+F L++LDL LP +DG Sbjct: 2 YKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 S+ + ++++ + +P+I++TA+GEE+D+I G +G DDY+ KPF+P EL+ RI+AVLRR Sbjct: 62 SVLKEIKNRED-VPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 EE ++ +GK +NL TRE+ + EP+ LTS E+A+L+ L +P ++++ Sbjct: 121 K-----GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQ 175 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +M+ + + V + RLR +EEDP+ PR I+TVWG+GY Sbjct: 176 IMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGY 221 >UniRef50_B0KI24 Two component transcriptional regulator, winged helix family n=3 Tax=Pseudomonas putida RepID=B0KI24_PSEPG Length = 240 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 149/234 (63%), Gaps = 9/234 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + +LVVDDD +R LL YL + G+ V + A+ EQM L R+ L+VLDLMLPGEDG Sbjct: 2 STTLLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGEDG 61 Query: 64 LSICRRLRSQSNP-MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 LS+CR+L Q+ P + +IM++AKG +DRI+GLE+GADDY+ KPF PREL+ARI+AVLRR Sbjct: 62 LSLCRQL--QATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR 119 Query: 123 QANELPGAPSQEEAVI---AFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPRE 178 + A ++E AV+ F F+L R + R D E + L ++ VL+ L+ Sbjct: 120 P--QRLDAQAEEPAVMDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNR 177 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +SRD+L A GR++ +RS+D+ +SRLR+ + PA I T+ GY+ Sbjct: 178 VVSRDQLTRSAFGRDHLPDDRSVDMCVSRLRQQLRRAPAGAAQILTIRNEGYLL 231 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 149/235 (63%), Gaps = 7/235 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++ K+LVV+D+ +R + L G++V + E LLT L+VLDLMLPG Sbjct: 3 EKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGI 62 Query: 62 DGLSICRRLRSQSNPMP-IIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL +C+ +R ++ P P II++TAKG++ D+I+GLE+GADDY+ KPFNP EL+ARI+A+L Sbjct: 63 DGLEVCQHIR-ETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAML 121 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR+ G +G L+ ++ + ++ + LT E+++LK + +P + L Sbjct: 122 RRRDRYEAGRTG-----YTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKAL 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 R++++N G +Y +++DV I RLR +E++P+ PRYI+T+WG GY + P+ Sbjct: 177 RREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_Q2P1E0 VirG-like two component response regulator n=13 Tax=Proteobacteria RepID=Q2P1E0_XANOM Length = 259 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/231 (43%), Positives = 139/231 (60%), Gaps = 3/231 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+LVVDDD + ++ ++ G + N+ ++ L R +++LDLML EDGL Sbjct: 24 KVLVVDDDQAMAHVVMGHIRSHGMEAFVATNSSELAEALRRREPDILLLDLMLKHEDGLD 83 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ-A 124 + R LR +S+ IIM + +E+DR+VGLE+GADDY+PKPF EL ARIRAVLRR Sbjct: 84 LLRALRKESDIPVIIMSGHRRDEIDRVVGLELGADDYLPKPFGLHELTARIRAVLRRHIT 143 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEP-MPLTSGEFAVLKALVSHPREPLSRD 183 +++ A E + F ++ +L R + R P + LT GE+A+L+A V P PLSR+ Sbjct: 144 SKMAAARGAGEGRVRFDAWEFDLQARTVGRTGAPAIALTKGEYALLRAFVDAPGRPLSRE 203 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 LM R E +RSIDVQI RLRR +E+DP P I T G GYVF P Sbjct: 204 HLMRATRLHE-DVFDRSIDVQILRLRRKLEQDPREPTLIVTQRGAGYVFTP 253 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 5/236 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDD+ + LL L + G++V + + L +SF ++LDLMLP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + ++LR + PII+VTAK +E D++ GLE+GADDYI KPF+PRE+LARI+AV+RR Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 126 E-----LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 + P AV+ G +++ + R + + LT EF +L V L Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 SRD ++N G +Y++ R +D+ IS LR +E DP PR I+TV G GY FV DG Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 144/232 (62%), Gaps = 8/232 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++ILV DD+ ++R LL L ++G++ + +N + L E+FHL++LD+M+P DGL Sbjct: 6 FRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGL 65 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + C R+R SN +PII++TA+ EE+DRI GL+IGADDYI KPF+PRELLARI A LRR Sbjct: 66 TACMRIREFSN-VPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTH 124 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + ++EA G +++ R + + + + LT EF +L +++ + SR++ Sbjct: 125 S----FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L++ G EY R++D I LR + E YIQTVWG+GY F +G Sbjct: 181 LLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ + L+E YL + + V A++ + + L +LD+MLPG GL+ Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC+++R + + PIIM+T K EVD+I GL IGADDYI KPF P EL+AR++A LRR Sbjct: 64 ICQKIRDK-HTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK- 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + G Q E VI +N+ T E + ++ + LT EF++L+ L + +S + L Sbjct: 122 KFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELL 181 Query: 186 MNLARGREY-SAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + G EY S +I V I LR + + +P+YI+TVWG+GY Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGY 227 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 144/232 (62%), Gaps = 10/232 (4%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL++DDD + L+ YL + F+ N + +LL +F L++LD+MLPG DGL + Sbjct: 13 ILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGLDL 72 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C+ +R Q++ MPIIM++A DR+ GLE+GADDYI KPF+ RELLAR++A LRR + Sbjct: 73 CQMIR-QTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQGD 131 Query: 127 LPG-----APSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPL 180 L +P Q+ I F + L+ T + R+ +PL+ E+ +L + HP L Sbjct: 132 LSKERKKLSPLQK---IHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRIL 188 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +RD+LM+L ++ + +R+IDV I RLR+ +E+DP +P+ + T+ G GY F Sbjct: 189 NRDQLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQF 240 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 146/231 (63%), Gaps = 6/231 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVVDD+ +R LL L + G++V A+ L L++LD+MLP DGL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTA--LQRAPEADLVLLDIMLPEVDGLE 59 Query: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +CR+L++ Q++ +PIIM+TAK EE+DR++GLE+GADDY+ KPF+ RELLAR++AVLRR Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 124 ANELPGA--PSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 A+ G+ + E + G +L+ + + + D+ + LT E+ +LK LV++P S Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFS 179 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 RD+L+ G EY R++DV I LR +++DP I+TV G+GY F Sbjct: 180 RDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 151/236 (63%), Gaps = 10/236 (4%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANA-EQMDRLLT-RESFHLMVLDLMLPGEDGL 64 +L+++DD L L+ YL ++V+ A E ++ L +S L++LDLMLP DG+ Sbjct: 11 VLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMDGM 70 Query: 65 SICRRLRSQSNP----MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +C+R+R + IIM+TAKG+ DR++GLE+GADDY+ KPF PRELLARIRAV+ Sbjct: 71 QVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRAVM 130 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR ++LP Q+E + FG+ K+ + E+ +DEP+ LT+ +F +L +H + L Sbjct: 131 RR--HDLP-LHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSGKVL 187 Query: 181 SRDKLMNLARGREYS-AMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 SR++L + + S ++R+IDV ISRLR ++E++P P+ I TV G+GY F D Sbjct: 188 SREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 243 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 139/227 (61%), Gaps = 3/227 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL++DDD L LL YL+ +GF V + + +Q L + ++ L+VLD+MLP G Sbjct: 3 KILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGFD 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + + LR S P+IM+TAKG+ VDR++GLEIGADDY+ KP +PREL+ARIRA+LRR + Sbjct: 63 VLKILRQHSQT-PVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRASI 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P+ E + GK L+LGTR +++ + LT EF+VL+ LV + +S+D + Sbjct: 122 AEANQPNVER--LTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDM 179 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 A R+ + +RSIDV +S +R+ + + I V G GY+ Sbjct: 180 TEQALNRKLTPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYML 226 >UniRef50_UPI00016988BE Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016988BE Length = 175 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 83/159 (52%), Positives = 115/159 (72%) Query: 78 PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAV 137 PII+++A+GEE+DRI+GLE+GADDY+ KPFNPRELLARIRAVLRR + + E+AV Sbjct: 16 PIIIISARGEEMDRIIGLEVGADDYLAKPFNPRELLARIRAVLRRMKHADQPMEAAEKAV 75 Query: 138 IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAM 197 + FG F L++ + RE +PLT GEF +L+ + H LSRD LM + +G E S + Sbjct: 76 LEFGPFALDVEKYRLTREGNEIPLTHGEFTLLRVFLEHSGRVLSRDMLMEITKGYERSHL 135 Query: 198 ERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 +RSIDV ++RLRR +E +P+ P Y++TVWG GY+F +G Sbjct: 136 DRSIDVCVNRLRRKIEPNPSEPIYLRTVWGAGYLFSRNG 174 >UniRef50_Q7CXM1 Two component response regulator n=11 Tax=Alphaproteobacteria RepID=Q7CXM1_AGRT5 Length = 237 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 144/224 (64%), Gaps = 9/224 (4%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+VDDD R+R LL+R+L ++G++V +A + R + F L++LD+M+PGE+GLS+ Sbjct: 18 LLIVDDDARIRNLLQRFLGDKGYRVSVAGDAAEARRKMVGIRFDLLILDVMMPGENGLSL 77 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R L +++ +P+I++TA+ E RI GLE GADDY+ KPF+PREL+ RI +LRR N Sbjct: 78 TRSL-NENKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILRR--NT 134 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P P E+ I FG + ++ RE+ R E + LT E ++ + + R +L+ Sbjct: 135 SPDTPKIEQ--IMFGPYSFSIPKRELRRGAETIRLTDREQEIMLLFALRAGDTIPRHELV 192 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 E ER+IDVQI+RLRR +E+DPA+P Y+QTV G+GY Sbjct: 193 EA----ESEVGERTIDVQINRLRRKIEDDPANPVYLQTVRGIGY 232 >UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax=Proteobacteria RepID=Q3KAS5_PSEPF Length = 235 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 143/229 (62%), Gaps = 6/229 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+V+DD RL AL+ +L + G++VR+V + ++VLDLMLPG+ GL Sbjct: 8 RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSGLH 67 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +RS S+ PI+++TAK +++D I+GLE GADDY+ KP P LLAR+RA+ RRQ Sbjct: 68 VCREIRSVSDT-PIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQVP 126 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + G S E FG ++ RE+ E + LT+ EF +L L S + LSRD + Sbjct: 127 D-SGVVSSLE----FGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDI 181 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +N RG + + RS+DV IS+LR ++++P P I+TVWG GY+F P Sbjct: 182 LNRMRGIAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNP 230 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 172 bits (436), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 143/233 (61%), Gaps = 7/233 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N I +V+D+ L LL+ YL + F V+ + +++ + L++LDLMLPG DG Sbjct: 10 NKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADG 69 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +++CR +R+ S +PIIMVTAK EE+DR++GLEIGADDY+ KPF+PRE++AR++AVLRR Sbjct: 70 VTLCREIRTFS-AVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR- 127 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 G EA I G L T + + + +T EF++L A ++HP + SRD Sbjct: 128 -----GGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRD 182 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 +L+ +GR Y +R+ID I LR+ + I++V+G+GY F+ +G Sbjct: 183 ELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFILEG 235 >UniRef50_D0Z2F0 DNA-binding response regulator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2F0_LISDA Length = 249 Score = 172 bits (436), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 141/235 (60%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E Y +L+++DD++L+ +L Y QGF V++ ++ L+ + +++LDLMLPG Sbjct: 15 MTETYSLLIIEDDLKLQQMLADYFLTQGFTVQTHSDGNGAIELIESSNPDIVLLDLMLPG 74 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL+ICR++R + ++M+TA ++ D + LEIGADDY+ KP PR LLAR+R +L Sbjct: 75 NDGLTICRQVRGKYQG-KLMMLTASNDDFDHVAALEIGADDYVVKPIKPRVLLARMRMLL 133 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A P P V+ +G L+ + + + +T EF +L L S P PL Sbjct: 134 RR-AKIQPDTPVNLN-VLTYGNLTLHKNRKLCEFSGQKICMTDSEFDLLWLLASSPDAPL 191 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 SRD L RG EY ++R+ID +I LR+ + +D + P+ I TV G GY+FVPD Sbjct: 192 SRDFLTKELRGIEYDGIDRTIDNKIVSLRKKLLDDSSTPQRIITVRGKGYLFVPD 246 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 172 bits (436), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 149/232 (64%), Gaps = 8/232 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+++D++ + + E + ++GF+ V + + + T E++ L++LD+MLP DG++ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 ICR++R +++ +PIIM+TAK E D+++G E+GADDY+ KPF+P L+ARI+AV+RR Sbjct: 62 ICRKIR-ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRY-- 118 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP-LTSGEFAVLKALVSHPREPLSRDK 184 + G +E +I F +N TRE+ EP+ LT EF +L LV +PR+ SR++ Sbjct: 119 KATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178 Query: 185 LMNLARGREYSAMERSIDVQISRLR-RMVEEDPAHPRYIQTVWGLGYVFVPD 235 L+ G ++ ER++DV I RLR ++ ED ++ TVWG+GY F D Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP---FLYTVWGVGYKFDED 227 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 148/238 (62%), Gaps = 7/238 (2%) Query: 1 MQENYK-ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ N K +L+++D+ + +++ YL + ++ N ++ + ++SF ++LDLMLP Sbjct: 1 MEANKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G IC+R+R QS +PI+M+TAK EE DRI GL+IGADDY+ KPF+P+EL+AR+RA+ Sbjct: 61 DLSGEEICKRIRLQSQ-VPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAI 119 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 +RR NE A E + G K++L E +++DE + LT+ EF +L + + + Sbjct: 120 MRRTNNEGLKAHLIE---LNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKV 176 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 SRD+L+ G +Y +R+IDV I LR +E + +YI TV+G+GY FV S Sbjct: 177 FSRDELVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFVKVSS 232 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 142/228 (62%), Gaps = 4/228 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANA-EQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+++D++ +R+ + L +G+++ E ++++ T + +LD+MLP G+ Sbjct: 16 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C+ +R + + IIM+TAK +E D+I G GADDYI KPF+ +ELL R+ A+LRR A Sbjct: 76 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + S E I F L++ R++F+ + + LT EF+++K L+S+ ++ LSRD+ Sbjct: 136 KDDSSVKSSE---IVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQ 192 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +++ G Y + +DV I R+R +E+DP+ P+YIQT+WG GY F Sbjct: 193 ILDEVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCF 240 >UniRef50_B8H2H3 Two-component response regulator petR n=8 Tax=Alphaproteobacteria RepID=B8H2H3_CAUCN Length = 233 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 143/232 (61%), Gaps = 12/232 (5%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +LVVDDD RLR L++ +L+ GF+V + ++A D+L F LMVLD+M+PGEDG++ Sbjct: 11 LLVVDDDDRLRKLIKEFLSRAGFRVTAASSAAAADKLFDALDFDLMVLDVMMPGEDGMAF 70 Query: 67 CRRLRS---QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +RLR+ ++ PI+M+TA+ + DRI GL G DDY+ KPF P+ELL RI A+LRR Sbjct: 71 TKRLRAKGGEAGRTPILMLTARDQTADRIEGLSSGVDDYLGKPFEPQELLLRIEAILRRS 130 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 A P P ++ G+ + E+ + E + +T E +L+ L EP+ R Sbjct: 131 AAR-PVGPK----ALSLGRCTFDADRGELTCDGEAVRITEAEVTLLRRLARSLHEPVDR- 184 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + LAR A R++DVQ++RLRR +E DP +PRY+QTV G+GY PD Sbjct: 185 --LELARD-TADATGRAVDVQVTRLRRKIEPDPKNPRYLQTVRGVGYRLAPD 233 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 143/238 (60%), Gaps = 7/238 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +ILV DDD + +LE LT +GF V ++ ++ L + L++LD+M+P Sbjct: 1 MSVARRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG ++C R+R+ S +PI+++TA+G+ VD++VG +GADDY+ KPF+ EL+ R+ A+L Sbjct: 61 VDGFAVCGRIRAASA-VPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAIL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR +P P E + FG ++N TR + D LT EF +L + SHP P Sbjct: 120 RR----MPTLP--ESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPF 173 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +R+ L+ + + ++ V I RLR +E++PA PR+I+TVWG+GY F P G++ Sbjct: 174 TRESLLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 144/234 (61%), Gaps = 3/234 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 ++ K+L+VDD+ +R +LE L+ G+ V + ++ E+ L +E +++LD+M+P Sbjct: 11 LETKEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPK 70 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C+ +R S+ +PIIM+TA G+ DRI GLE+GADDY+ KPF+P+EL ARIRAVL Sbjct: 71 LDGYGVCQEIRKDSD-VPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVL 129 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + +I F ++L R++++++E + LT EF++L+ L+S +P Sbjct: 130 RRTNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPF 189 Query: 181 SRDKLMNLARGR--EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SR ++ G E R +DV ISRLR +E DP++P I T G GY+F Sbjct: 190 SRADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 138/230 (60%), Gaps = 1/230 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+V+DD+ + LLE ++ + +V SV + + F L++LDL +P +G+ Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR N PIIMVTAK EE+D+++GLEIGADDYI KPF+ REL AR +AV+RR Sbjct: 69 VCRELRKTKNT-PIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + A + FG K+N+ R + E + + L+ EF +L L ++P SR +L Sbjct: 128 ANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSEL 187 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +++ G +S E +++ I+RLR +E D +P YI T WG+GY F D Sbjct: 188 LDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 145/232 (62%), Gaps = 6/232 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + IL+V+D+ ++ L YL GF+ + ++ R + +E+ L++LD+MLPG Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DG+ +C+ LRS S +PIIM+TA+ EE+DR++GLE+GADDYI KPF+PRE++AR++AVL Sbjct: 61 KDGMEVCKELRSFSQ-IPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P +E I G L+ +RE+ + LT EF +LK ++S P Sbjct: 120 RRS-----NTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVF 174 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SR++L++LA G ++ +R+ID I LR+ +++ I +++G GY F Sbjct: 175 SRNELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 133/229 (58%), Gaps = 6/229 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDDD +R ++ RYL G+ V + E RL L+VLDLMLPG GL Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR + +P++M+TA GEE DR+VGLE GADDY+ KPF+PREL+ R+ ++LRR Sbjct: 70 VCRRLRERGE-VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P E V+ G +L+L R + + LT EF +L L+ HP SR +L Sbjct: 129 SQPA----EGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAEL 184 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G + ++ V + RLR VE DPA P I TVWG+GY + P Sbjct: 185 LEQVWGWSFGD-HSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_A9KX94 Two component transcriptional regulator, winged helix family n=7 Tax=Gammaproteobacteria RepID=A9KX94_SHEB9 Length = 235 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 143/233 (61%), Gaps = 4/233 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAE-QMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+DD+ L ++ YL +G+QV ++N + R+L + L++LD+MLP +DGL Sbjct: 4 KILIVEDDLPLAESIQEYLNYEGYQVEIISNGVLAVSRILEWQP-ALVILDIMLPQKDGL 62 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR-Q 123 S+CR +R Q N I+M TA+GEE+D+IVGLEIGADDY+ KP PR LLA+I+A LRR + Sbjct: 63 SVCREVRPQYNGY-ILMFTARGEEIDQIVGLEIGADDYLLKPVKPRMLLAKIKAFLRRDR 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 E Q I+FG+ +N R + D + LT GE+ +L L + LSR+ Sbjct: 122 LAESIAENQQVSEYISFGQLAINTQKRSVTLADVAIKLTDGEYDLLITLAKNAGNILSRN 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 ++ +G Y +ER +D I +LR+ + +D +P I+T+ GY+FV G Sbjct: 182 DIVEQVKGYYYDGIERGVDNHICQLRKKLGDDARNPFKIKTIRSKGYLFVSSG 234 >UniRef50_Q2S740 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S740_HAHCH Length = 242 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 139/238 (58%), Gaps = 5/238 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+VDDD L L++++L + G+ V+ + + E L R L++LD+MLPG DGLS Sbjct: 4 RLLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLIILDVMLPGMDGLS 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--- 122 +CR +R PIIM+T+ +++D + GLE+GADDY+ KP R LLA IRA LRR Sbjct: 64 VCREVRKHYKG-PIIMLTSLDDDIDEVAGLEVGADDYLAKPVKSRVLLAHIRAQLRRVET 122 Query: 123 -QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 AN+ +QE VI G+ +N R + + + T+ EF +L L +S Sbjct: 123 YSANDSDAPATQENGVIRIGELVINSNARTVVKAGVAIDFTTAEFNLLYYLARQAGSVIS 182 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 RD + EY ++RSID+++SR+R+ + +DP PR I+T+ G GY+FV + Sbjct: 183 RDLVYREIFNLEYDGLDRSIDLRVSRIRKRLGDDPKQPRLIKTIRGEGYLFVDNADNG 240 >UniRef50_B2V706 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=B2V706_SULSY Length = 224 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 148/227 (65%), Gaps = 9/227 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGLS 65 +++++DD L LL +YL + V++ ++++ ++ L +S+ LM+LDL LP DG+ Sbjct: 4 VIMIEDDKELAELLTQYLAKFNISVKNFEHSKKALEELKKNQSYDLMILDLTLPEIDGID 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC+ L + N +PII+ +A+ ++ D+I+ LEIGADDY+ KP+NPREL+ARI+AVLRR+ Sbjct: 64 ICKMLAKEGN-IPIIISSARSDDTDKILALEIGADDYLAKPYNPRELVARIQAVLRRKNK 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + E VI G+F+L+ + + EP+ LTS E+ +L L+ + L+RD + Sbjct: 123 AV-------EKVIKCGEFELDEEGYIIKKNGEPLNLTSAEYELLSMLIKNKGRVLTRDYI 175 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ + Y +++R++DV I R+R+ + +DP +P+YI +V G GY F Sbjct: 176 LDNSIYLNYDSIDRTVDVIIGRIRKKIGDDPKNPKYIISVRGFGYKF 222 >UniRef50_A1B7Z0 Two component transcriptional regulator, winged helix family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B7Z0_PARDP Length = 255 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 102/236 (43%), Positives = 147/236 (62%), Gaps = 12/236 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG-EDGL 64 +IL V+DD +L A L RY TEQG+ V + + M R L + F L+VLD+ LPG EDG Sbjct: 25 RILFVEDDRKLSAFLCRYFTEQGYLVEAAHDGAAMRRALAAKGFDLVVLDVGLPGREDGY 84 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + R L+ + + + I+ ++A+ + +DRIVGLEIGADD++ KPF PRELLARIRA+LRR Sbjct: 85 VLARELKKERD-IGILFLSARQDALDRIVGLEIGADDFLVKPFEPRELLARIRAILRR-- 141 Query: 125 NELPGA---PSQEEAVIAFGKFKLNLGTREMFREDEP--MPLTSGEFAVLKALVSHPREP 179 LP P E I F + L+L R + R+ + LT+ EF +L L P Sbjct: 142 --LPAGTARPRGEGRRIGFDGWLLDLDAR-VLRDAQGGVQNLTTQEFNLLSVLAQRPGRV 198 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 LSRD+L++L R +S +RS+DV I ++RR + ++ PR I+T+ G GY+F P+ Sbjct: 199 LSRDQLLDLTVSRHWSPYDRSVDVMIGKIRRKIGDNGPEPRRIRTIRGTGYMFSPE 254 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 142/226 (62%), Gaps = 7/226 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDDD + LL +L F V + +N E+ + + ++LD+M+PGE+G + Sbjct: 6 ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGFAF 65 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CRR+R++S+ +PI+ ++A+ +VD+I GL +G DDYI K +P E++AR++AVLRR A+ Sbjct: 66 CRRIRAKSD-VPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASN 124 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P P+ E ++ FG LNL TRE+ + + + LT E+ +L+ + HPR S D+L+ Sbjct: 125 QP--PT--ETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLL 180 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + + + + ++ V +SRLR +E +P P+YI VWG+GY F Sbjct: 181 D--KLWDGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRF 224 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 135/227 (59%), Gaps = 11/227 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH--LMVLDLMLPGEDG 63 ++LVV+DD + + YL GF V + + L E FH L+VLD MLPG DG Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDG--FGALDAAERFHPDLIVLDRMLPGIDG 98 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +CRR+RS+ + +PII++TA G +RI GLE GADDYI KPF+PREL+ R++++LRR Sbjct: 99 SEVCRRIRSRGD-VPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRS 157 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 +L EA G+F L+ + R E + LT+ EF +L L+ HP + SR+ Sbjct: 158 IGDL-----TPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSRE 212 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +L+ G E+ + ++ V + RLR +E DP HP + TVWG+GY Sbjct: 213 QLLKSVWGWEFGDLS-TVTVTVRRLREKIETDPTHPTILATVWGVGY 258 >UniRef50_C3JXL3 Oxidative stress related two component system, transcriptional regulator n=3 Tax=Pseudomonas RepID=C3JXL3_PSEFS Length = 247 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 142/232 (61%), Gaps = 3/232 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDD ++R L YL F VR+ +A M +LL ++F ++VLD++LP DG Sbjct: 11 RVLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFE 70 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA- 124 +C +L +SN P+I++TA+ DR+ GL++GADDY+ KPF PREL+ARI +VLRRQ+ Sbjct: 71 LCNQLHRRSN-TPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQSR 129 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEP-MPLTSGEFAVLKALVSHPREPLSRD 183 N P AP FG + ++ + R+ P + L++ E +L+ ++HP L R+ Sbjct: 130 NTGPAAPRSGARAYRFGGWHFSVTGATLRRDGSPAVQLSTAESRLLQVFLAHPNTLLPRE 189 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +L++L + +R+ID Q+SRLRR + + A ++T+WG GY+ + Sbjct: 190 RLIDLTAAADSDVSDRAIDRQVSRLRRKLAQGDAAQELLRTIWGGGYLLAAE 241 >UniRef50_C6QH06 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QH06_9RHIZ Length = 242 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 146/236 (61%), Gaps = 9/236 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDD+ +R LL +G+ V A+A L + L+ LDL L EDGLS Sbjct: 4 KILVVDDEPEIRRLLRTCFEREGYAVAEAADAAATRAALNEDIVSLVTLDLALGQEDGLS 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ-- 123 + R +R++ + +PI+MV+ KG+ VDRIVGLEIGADDYI KPFN RE+LAR+R+VLRR Sbjct: 64 LAREIRAKHD-VPIVMVSGKGDTVDRIVGLEIGADDYISKPFNLREVLARVRSVLRRHDG 122 Query: 124 ---ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDE-PMPLTSGEFAVLKALVSHPREP 179 A +P+ E + F + L+ +RE+ E+ LT+ EF +L+ P Sbjct: 123 GNRAASTTSSPAHE--IYEFAGWSLDATSRELKDENGVSRELTTAEFNLLEMFARRPHRA 180 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 L+RD++M++ +G +YS ++RSID +SR+RR ++ + I+++ G+GY+F D Sbjct: 181 LTRDEIMDILKGHDYSPLDRSIDALVSRVRRKIDNGSSTSPKIKSIRGIGYMFASD 236 >UniRef50_A9BR19 Two component transcriptional regulator, winged helix family n=30 Tax=cellular organisms RepID=A9BR19_DELAS Length = 252 Score = 170 bits (431), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 149/239 (62%), Gaps = 10/239 (4%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANA----EQM---DRLLTRESFHLMVLDL 56 + +L+++DD RL ++ YL G QV + +A EQ+ D + + L++LDL Sbjct: 9 THHLLMIEDDTRLAQMVGDYLGNNGLQVTHMGDARSGLEQLQPADGVPGADLPDLVILDL 68 Query: 57 MLPGEDGLSICRRLRSQSNP---MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELL 113 MLP DGL +CRR+R+ P +P++M+TAKG+ +DRI+GLEIGADDY+PKPF PRELL Sbjct: 69 MLPDMDGLEVCRRIRALPGPAAQVPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELL 128 Query: 114 ARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALV 173 ARIRA+LRR+ A +Q + FG +++ R + +P LTS +F +L L Sbjct: 129 ARIRAILRRRGGGEGTANAQVTTALRFGSLEIDRDARSVTVAGQPCELTSYQFDLLVTLA 188 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+RD++M RGRE A +RSIDV + R+R +E DP P+ I TV G+GYVF Sbjct: 189 ERAGRVLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVF 247 >UniRef50_Q0SQL4 Two-component response regulator n=10 Tax=Firmicutes RepID=Q0SQL4_CLOPS Length = 233 Score = 170 bits (430), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 152/232 (65%), Gaps = 7/232 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E+ IL+VDD+ ++ +LE YL ++GF V S +N E+ ++ L++LDLMLP Sbjct: 2 ESLNILLVDDEEKIIEVLEAYLKKEGFSVFSCSNGEEALKIFDNNKIDLILLDLMLPDLS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +C+ +R++S +PIIM+TAK EE D + G +IGADDY+ KPF+ ++L+ARI+A++RR Sbjct: 62 GEEVCKVIRAKS-CVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRR 120 Query: 123 QANELPGAPSQEEAVIAF--GKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 P P++ ++ F G+ K+N+ TRE++ DE + LTS EF +L L S+P++ Sbjct: 121 ST---P-CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIF 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +RD+++ L G + + +R ID I LR +EE+ P++I TV+G+GY F Sbjct: 177 TRDEIIELVLGDKSDSFDRVIDSHIKNLRGKIEENTRKPKFIVTVYGVGYKF 228 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 170 bits (430), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 144/233 (61%), Gaps = 2/233 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ YK+L+VDD+ + ++E+ L + +++ N E +ES L++LD+MLP Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR +R +++ +PI+M++AKGE +D+ VG +GADDY+ KPF+P EL R++A+L Sbjct: 61 IDGYEVCRTIR-ETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALL 119 Query: 121 RRQAN-ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 RR + E + ++ I+ G+ ++N + E+F +P+ LT EF +L + HP + Sbjct: 120 RRSFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQV 179 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R++L EY +I V I +LR +E DPA P+YIQTVWG+GY F Sbjct: 180 FTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 137/227 (60%), Gaps = 2/227 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+V+DD ++ + + YL GF+V A+ + ++ + L++LD+MLPG DG + Sbjct: 3 KILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFA 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR + +P++MVTA+ EEVD + GL +GADDYI KPFNP EL+AR+R+ + R Sbjct: 63 VCRELR-RYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 L + E+ V+ G ++ L +F + + +P T EF +L L HP SR+ L Sbjct: 122 IL-ASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREAL 180 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 G E ++ V I+R+R +EEDPAHPRY++T+ G GY F Sbjct: 181 FERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_A6VT30 Two component transcriptional regulator, winged helix family n=26 Tax=Gammaproteobacteria RepID=A6VT30_MARMS Length = 245 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 145/232 (62%), Gaps = 4/232 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+++DD++L L+ YL +QGF V + ++ L L++LDLMLP DGL++ Sbjct: 9 ILLIEDDLKLAELITSYLGQQGFVVHHADDGQKGLELAEIIQPQLIILDLMLPNLDGLTV 68 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR---Q 123 CRRL++ ++++TA G+++D++ LE+GADD++ KP +PR LLAR+RA+LRR + Sbjct: 69 CRRLQTWYQG-ALLILTASGDDMDQVAALEMGADDFVNKPIHPRVLLARVRALLRRDEKR 127 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 AN L A + + F K+N+G R++ E + LT EF +L L S+P + +SRD Sbjct: 128 ANPLSPASTINNDQLIFDSLKINIGRRQVELAGELIKLTETEFELLWLLASNPEKTVSRD 187 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ RG EY ++RSID +I LR+ + + PR I TV G GY+F+ D Sbjct: 188 EISQSLRGIEYDGLDRSIDNKIVSLRKKLGDSNGLPRRIITVRGKGYLFITD 239 >UniRef50_B4SKL2 Two component transcriptional regulator, winged helix family n=2 Tax=Stenotrophomonas maltophilia RepID=B4SKL2_STRM5 Length = 235 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 97/234 (41%), Positives = 145/234 (61%), Gaps = 8/234 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +++VVDDD +R + L G+QVR A A +D LL E +++LD M+PG Sbjct: 1 MNAPARVIVVDDDASIRDAIADCLLLHGYQVRVAAGAMALDMLLQAERPDVIILDWMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CRRL Q+ +PI+M++A G DR++GLE+GADDY+ KPF+PRELLAR+RA+L Sbjct: 61 EDGLSVCRRL--QARAIPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREP 179 RRQ +Q + + F ++L R + D + L+ GEF++L L P Sbjct: 119 RRQDK----LRTQVASEMRFAGWRLLPEQRRLIAPDGAELVLSRGEFSLLLVLAERPGRV 174 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMV-EEDPAHPRYIQTVWGLGYVF 232 L+R++L+ L+R +++R+ID+ ISRLRR + + P +QT+ G GY F Sbjct: 175 LAREQLLQLSRSEPSDSVDRAIDLAISRLRRKLGQAAPGAEALVQTLRGEGYRF 228 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 101/238 (42%), Positives = 141/238 (59%), Gaps = 7/238 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + I +VDDD +R+LL YL GF + NA + + R L+V+D+MLPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +GL + R LR++S +P+I +TA G+ DRIVGLE+GADDY+ KPF PRELLARIR VL Sbjct: 61 MNGLELFRNLRAEST-VPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVL 119 Query: 121 RRQANELPGA--PSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSG-EFAVLKALVSHPR 177 RR GA E + F + L+ R + D + SG E+ +L+ + +P+ Sbjct: 120 RRTEG---GARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQ 176 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 LSRD+L+ +GR +RSIDVQISRLR + ++ P+ I+TV G GYV D Sbjct: 177 RVLSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATD 234 >UniRef50_B7VQ15 DNA-binding response regulator n=8 Tax=Vibrionales RepID=B7VQ15_VIBSL Length = 234 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 138/228 (60%), Gaps = 3/228 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+++V+DD++L+ +L+ Y Q F+V ++ + + + + +++LDLMLP DGL+ Sbjct: 5 KMIIVEDDLKLQQMLKDYFVAQDFEVTALDDGSDAVQTILDDQPDIVLLDLMLPVTDGLT 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 ICR+ R+ I+M+TA ++ D + GLE GADDY+ KP PR LLAR+R++LRRQ Sbjct: 65 ICRQTRTLFKG-KILMLTASDDDFDHVAGLETGADDYVTKPIKPRVLLARVRSLLRRQET 123 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P + + + FG+ L ++ D + LT EF +L L S+P PLSRD L Sbjct: 124 NTPLV--DDSSSLQFGQLTLKNTYKKCELSDVVLSLTDSEFDLLWLLASNPDTPLSRDYL 181 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 RG EY ++R+ID ++ RLR+++ +D IQT+ G GY+FV Sbjct: 182 TQTLRGIEYDGIDRTIDNKVVRLRKILGDDKTPAEKIQTIRGKGYLFV 229 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 144/230 (62%), Gaps = 3/230 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + IL++DDD L LL YL +G+++ + + E + + L++LD+M+PG DG Sbjct: 3 THSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +R+R +S+ +P++M+TAKGEE DRI+GLE+GADDY+ KP++ RELLARI+A+LRR Sbjct: 63 FETLKRIR-ESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRI 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + ++A +LN T ++ + E +P+T+ EF VL+ L+S + + ++ Sbjct: 122 ELD-KNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKE 180 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L GRE A +RSID+ +S +RR + + IQT+ G+GY+FV Sbjct: 181 DLYLEVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSK-IQTIRGIGYMFV 229 >UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7R2_9BURK Length = 239 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 141/234 (60%), Gaps = 7/234 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+V+DD + L +L+ +G+ + + E D LL L++LD+MLPG+DGL Sbjct: 5 SILIVEDDADISVPLAAFLSGKGYVTQVADSVEAADALLATNDVDLVLLDVMLPGKDGLD 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ-A 124 +CRRL ++ P IIM+TA + D++VGLE+GADDY+PKPF+PRELLARIRAVLRR A Sbjct: 65 LCRRLHAKGGPR-IIMLTALDDPTDKVVGLELGADDYVPKPFDPRELLARIRAVLRRPVA 123 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPM--PLTSGEFAVLKALVSHPREPLSR 182 +E A E V+ F F R R + PLT E +L L + R+ LSR Sbjct: 124 SEGEVAKPVTELVLQFSGFTF-YPYRRFVRSPAGLRVPLTGAETDLLLVLCQNVRKVLSR 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRR-MVEEDPAHPRYIQTVWGLGYVFVPD 235 ++L+NL RG + RSID+ +SRLRR +V DP I+TV GY F PD Sbjct: 183 EELINLTRGTNFPISGRSIDLLVSRLRRKLVGNDPLE-ETIRTVRTDGYAFQPD 235 >UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9U3_9GAMM Length = 243 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 143/239 (59%), Gaps = 10/239 (4%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + KIL++DDD L LL++YL Q+ S +LL +E ++LD+MLP EDG Sbjct: 2 DVKILLIDDDESLADLLKQYLARYDMQLVSANCPSLGYQLLEKEQPQAIILDVMLPEEDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR- 122 +C+ +R +S+ +PIIM+TA+G+ +DR++GLEIGADDY+ KPF PREL+AR++ +LRR Sbjct: 62 FEVCKHVRRKSD-IPIIMLTARGDVMDRVIGLEIGADDYLGKPFEPRELVARLQTILRRL 120 Query: 123 ---QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 E S E ++ F +N +++ D+ + LT+ E+ +L + P+ Sbjct: 121 EKQSQKENQTDASSAEHILTFKGMGINTERQQVKLFDQRLDLTTTEYRLLLLMAKSPQTV 180 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE---DPAHPR--YIQTVWGLGYVFV 233 SRD ++N +G E RS+D+ ISRLR+ + D H +I+TVWG GY FV Sbjct: 181 FSRDDILNHLKGVEIELFSRSVDIAISRLRQKFKAATPDDHHVSVDFIKTVWGAGYCFV 239 >UniRef50_Q1V0J5 Two-component system n=3 Tax=Candidatus Pelagibacter RepID=Q1V0J5_PELUB Length = 225 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 144/229 (62%), Gaps = 17/229 (7%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDDD +R+L+++YL E F V + +AE + ++ F L+VLD+M+ G+ GL Sbjct: 8 ILVVDDDEGIRSLIKQYLNENNFLVTTSNSAENAEEKISIIKFDLIVLDIMMTGKSGLDF 67 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 ++ +S+ + PII++TAKGE +R+ GLEIGADDY+PKPF P+EL+ RI+ +L + Sbjct: 68 IKQNKSKIDT-PIILLTAKGEAENRVEGLEIGADDYLPKPFEPKELILRIKNILNKTKR- 125 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD--- 183 + E+ +I F K++L + + D + S E +L+ ++++P + SR+ Sbjct: 126 -----NDEKRIITFDNIKIDLNKLLIIKNDIEYKINSTEKIILEKMINNPGKTFSREDIG 180 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 KL +L + ERSIDV I+RLR+ +E DP +P+Y+QT+ G GYV Sbjct: 181 KLTDLDK-------ERSIDVIITRLRKKIEMDPKNPKYLQTLRGAGYVL 222 >UniRef50_Q15TH0 Two component transcriptional regulator, winged helix family n=5 Tax=Gammaproteobacteria RepID=Q15TH0_PSEA6 Length = 244 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 142/231 (61%), Gaps = 4/231 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPG 60 E YKIL+VDDD L +LL +L E+GF+V ++ + +RLL + F +VLD+M+PG Sbjct: 3 NEKYKILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPG 62 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 GL + R +R++ +PI+M+T +G+++DRIVGLE+GADDY+ KP NPREL ARI+A++ Sbjct: 63 MSGLDVLRSVRAKRQ-VPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAII 121 Query: 121 RRQANELPGAPSQEEAVIA-FGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 RR N L + + V A +L+ GTR + +PLTS EF L L+ + Sbjct: 122 RRTENSLGNGAAGKTIVHALLHGIELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQT 181 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +++ + R A +R++DV ISR+R+ + + I+++ G+GY Sbjct: 182 ITKQDMTQEVLNRPLEAYDRAMDVHISRIRQKLSSQGIND-VIKSIRGVGY 231 >UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splendidus LGP32 RepID=B7VKB0_VIBSL Length = 244 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 141/234 (60%), Gaps = 8/234 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N ILVVDD + L YL F V + +M + L + L++LD+MLPG+DG Sbjct: 11 NKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGDDG 70 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L++C++LR QS +PIIM+TA ++ DRI GLEIGADDYI K FNPRELLARI+A+LRR Sbjct: 71 LTLCQKLRLQSQ-VPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALLRRS 129 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLSR 182 + SQ E + F + + R++ ED E + L+S ++ +L ++ P + LSR Sbjct: 130 T----FSHSQGERTLKFMDWTFDTLKRQLKHEDGEVVSLSSADYNLLTLMLDSPNQLLSR 185 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 + + GR+ +ER IDVQISRLR+ + +D + I TV GY+ V D Sbjct: 186 NDIAQALWGRDAEPLERGIDVQISRLRKQLRDDDRNT--IMTVRHRGYMLVIDS 237 >UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged helix family protein n=2 Tax=Marinobacter RepID=A3JEV6_9ALTE Length = 228 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/228 (42%), Positives = 142/228 (62%), Gaps = 8/228 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+++DD LR LL RYL QGF VR AN + L ES ++VLD+MLP +GL Sbjct: 4 RVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDINGLD 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R+LR ++ +P+I++TA G+E DRIVG E+GADDYI KP NPREL+AR+ A+LRR A Sbjct: 64 VLRQLRVSAH-LPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIAW 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + ++G +L R + + P+ LT+ E+ VL+ L++H + + L Sbjct: 123 DQKADLDDSR---SYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTDL 179 Query: 186 MNLARGREYSAMERSIDVQISRLRRMV-EEDPAHPRYIQTVWGLGYVF 232 M A GR +R++D+ IS LR+ + E+P PR I+TV GLGY + Sbjct: 180 MQWALGRRLETYDRTLDMHISNLRKKLGNEEP--PR-IETVRGLGYSY 224 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 143/229 (62%), Gaps = 3/229 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDDD + L+ L +G+ V +AE+ +++ ES + ++D+MLPG DG Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + R+LRS + P++ ++AKGEE D+++GLE+GADDYI KPF+ RE++ARI+AV RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + ++A G ++++ E+ D+ + LT EF +L+ L + + SRD Sbjct: 149 QLSAQEREERPKKIVAKG-LEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRD 207 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L++ G +Y R++DV I RLR +EEDP++P+YI TV G GY F Sbjct: 208 VLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 132/224 (58%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDD+ + LL L ++ F+V + + Q + ++ F ++LDLMLP DG+++ Sbjct: 4 ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGIAV 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 +++R PI+++TAK E D+IVGLE+GADDY+ KPF+PRE++ARIRA+ RR Sbjct: 64 TKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTTQP 123 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + Q I G ++ + D + LT EF +L + + SR+KL+ Sbjct: 124 IEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREKLL 183 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 N G +Y A R +D+Q+S LR +E++P HP Y++TV G GY Sbjct: 184 NAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGY 227 >UniRef50_P07545 Regulatory protein virG n=21 Tax=cellular organisms RepID=VIRG_AGRT5 Length = 253 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 146/230 (63%), Gaps = 4/230 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +LV+DDD+ +R L+ YLT F+V +VA+++Q +R+L E+ ++V+DL L EDGL I Sbjct: 16 VLVIDDDVAMRHLIVEYLTIHAFKVTAVADSKQFNRVLCSETVDVVVVDLNLGREDGLEI 75 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R L ++S+ II+ A+ EE D+++ LE+GA D+I KPF RE LARIR LR + + Sbjct: 76 VRSLATKSDVPIIIISGARLEEADKVIALELGATDFIAKPFGTREFLARIRVALRVRPSV 135 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLSRDKL 185 A +++ +F + LNL R + E+ + LT+GEF +L A + PR+ LSR++L Sbjct: 136 ---ARTKDRRSFSFADWTLNLRRRRLISEEGSEVKLTAGEFNLLVAFLEKPRDVLSREQL 192 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + +R RE +RSIDV I RLRR +E DP P+ I+T G GY F D Sbjct: 193 LIASRVREEEVYDRSIDVLILRLRRKLEGDPTTPQLIKTARGAGYFFDAD 242 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 150/235 (63%), Gaps = 6/235 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+L+ DDD RL L++ Y +G++V N + L+ + +++LD+M+P DG Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +++R++S+ +P+IM+TAKG+++DRI+GLE+GADDY+ KPFNPRELLARI+A+LRR + Sbjct: 63 TLKQIRNKSS-VPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQ 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E P+ A I L R ++ E E + LT+ E+ +L+ ++ P + L++ +L Sbjct: 122 EREDDPT---ADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQEL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEE-DPAHPRYIQTVWGLGYVFVPDGSKA 239 A GR+ + +RS+D+ IS LR+ + + PR I+TV G+GY+FV + A Sbjct: 179 SEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPR-IKTVRGVGYIFVSNEQGA 232 >UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A8LR92_DINSH Length = 234 Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 138/227 (60%), Gaps = 2/227 (0%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+DD R L YL EQG++V NAEQM++ L + L+++D+ L G+DGL+I Sbjct: 5 ILIVEDDRTTRMRLAAYLREQGYRVSEAENAEQMEQTLHDDPAELLLVDINLDGKDGLTI 64 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R R+ S + II++TA+ ++VD+IVGLE+GADDY+ KPF+ REL AR++ +L R + Sbjct: 65 TREQRAVSR-VGIILLTARDDQVDKIVGLEMGADDYVTKPFDKRELAARVKNLLAR-ITD 122 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + AP AV FG ++ + R + PL+ EF V+ AL HP + LSR ++ Sbjct: 123 IGQAPQGAHAVHDFGPWRFDRIRRRLISAARIEPLSKQEFDVMTALADHPGQTLSRARIA 182 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + R IDV + RLR+ VE+DPA P +I T G GY FV Sbjct: 183 EMIGRPAGRGNNRMIDVVVGRLRKKVEKDPARPEWILTEHGKGYQFV 229 >UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN2_9GAMM Length = 225 Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 144/231 (62%), Gaps = 10/231 (4%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANA-EQMDRLLTRESFHLMVLDLMLPGED 62 + +L++DDD + A+L + ++ V + + +D L + F L++LD+MLPG D Sbjct: 2 THSVLLIDDDHEMSAMLTELFKREAVELTVVDDGVKGLDAALNGD-FELILLDVMLPGID 60 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ + +RLR Q ++M+TA+G++ DR++GLE+GADDY+PKPFNPREL+AR+RA+LRR Sbjct: 61 GMQLLQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDYLPKPFNPRELIARVRALLRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 AN + + V+ F L+ E+ + +P+ +T EF +L+ L+ + +S+ Sbjct: 121 TANTM-----MQNEVLTVSGFTLDPSKAEVTCDRQPLVMTPTEFDILRCLMQQAGQMVSK 175 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D+L A GR+ +RS+DV IS +R+ + PA+P IQTV G GY V Sbjct: 176 DQLSVAALGRKMGPFDRSLDVHISNIRKKL---PANPERIQTVRGRGYRLV 223 >UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BRQ1_9GAMM Length = 235 Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 148/240 (61%), Gaps = 13/240 (5%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR-ESFHLMVLDLMLPGE 61 + ++L+VDDD+ L L+ YL +G+ + NA++ L R E F LM+LD+M+PG Sbjct: 2 DKQRLLMVDDDVELCELIGDYLRHEGYLIEFAHNADEACEQLKRSERFALMILDVMMPGR 61 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 GL + +++R + +P+IM+T +GE++DRI+GLE+GADDY+ KP NPRELLARIRAVLR Sbjct: 62 TGLELLQQIRPKVQ-IPVIMLTGRGEDIDRILGLEMGADDYLSKPCNPRELLARIRAVLR 120 Query: 122 RQANELPGAPSQE-----EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 R P Q ++++ L+ G RE+ E + LT EF VL L+++ Sbjct: 121 R------AEPQQRTTLFPDSLVEHAGVTLDPGLREVRINGELLELTGTEFNVLAYLIANA 174 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L +++L L R+ +A +R+IDV +SR+R+ + + + I+T+ G+GY FV D Sbjct: 175 GSVLEKEQLTELVLHRKLAAYDRAIDVHVSRVRQKLAKHLSDAELIKTIRGVGYQFVKDA 234 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 146/230 (63%), Gaps = 3/230 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVV+DD +R L+ R L E GF+ +V + +M + + L+++D+MLPG G + Sbjct: 22 ILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSGFDL 81 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C+ LR QS+ +PIIMV+A+GEE+DR++GLE+GADDYI KPF +ELLAR+RAVLRR Sbjct: 82 CKALR-QSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRRGPVN 140 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P A + E I+F +++++ RE+ + L+ E+ +L + + + + + RD+L Sbjct: 141 EPTAKGKSET-ISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLLSFLENAQRVIGRDRL 199 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + L+R R +RSIDV +SRLRR + I+T+ G+GY+F D Sbjct: 200 LELSRTRLGDVSDRSIDVLVSRLRRKIGNRVGERPLIRTIRGVGYMFAAD 249 >UniRef50_A6G4N0 DNA-binding response regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G4N0_9DELT Length = 223 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 140/227 (61%), Gaps = 12/227 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 + L++DDD RL LL YL + G ++ + R+L ES +++LD M+PG DGL Sbjct: 4 RALLIDDDARLFELLSGYLGQNGVELEHAVDGAAGLRVLANESHDVVLLDGMMPGMDGLE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + RRLR++S +P++M+TA+G+E DR+VGLE+GADDYI KPF+ RELLAR+RAVLRR Sbjct: 64 VLRRLRARS-AIPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVLRRMHP 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E+ V+A +GTRE+ E E LT EF +L AL+ ++R L Sbjct: 123 EVGRERLSANGVVAL------IGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRAAL 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ A + ER++DV IS+LR+ + D I+TV G+GYVF Sbjct: 177 LHEAGRDDTVVSERTVDVHISKLRKKLGGDK-----IKTVRGVGYVF 218 >UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Roseovarius RepID=A3W0Y1_9RHOB Length = 233 Score = 166 bits (420), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 141/234 (60%), Gaps = 6/234 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M I++++D+ R L YL G+ V + +AE+ D +L + L+++D+ L G Sbjct: 1 MARAAHIVIIEDEPVTRTTLAEYLRSHGYTVTAFDSAEKADPMLASDRADLLLVDITLDG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGL I R R++S+ + II+ T+ ++VDRIVGLE+GADDY+ KPFN RELLARI+ +L Sbjct: 61 KDGLQITREQRARSD-IGIILTTSLSDDVDRIVGLELGADDYVCKPFNRRELLARIKNLL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREP 179 RR E S++ + F + TR++ D EP+ +T EF VL L+ HP E Sbjct: 120 RR--TEAQRRFSRQN--VRFHGYAFAFATRQLIAPDGEPIRITRAEFEVLAELLRHPGEV 175 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L R++LM + R+ R++DV I RLR +EED + PR+I T G GYVF Sbjct: 176 LGRERLMTVITHRQQHPDTRTVDVIIRRLRTKLEEDASAPRFITTAHGEGYVFT 229 >UniRef50_C6NV64 Two component transcriptional regulator, winged helix family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NV64_9GAMM Length = 247 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 103/229 (44%), Positives = 149/229 (65%), Gaps = 8/229 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG-EDGLS 65 +L+VDDD RL ALL+ +L +G VR+ +N +M + L E ++V+D MLPG +DG+S Sbjct: 4 VLIVDDDQRLAALLQDFLQAEGMVVRTASNGREMWQQLAAEPVDVVVMDWMLPGGQDGIS 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R LR++S P PI+M++A+GEE +RI GLE G +DY+ KPFN RELLAR+R +LRR Sbjct: 64 LVRELRAKSGP-PILMLSARGEEEERIHGLESGVEDYLAKPFNARELLARLRVLLRRAGR 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 G V+ FG F L+L R +FRE E + L+ E +L P LSRD L Sbjct: 123 GDSGR------VLHFGPFVLDLVERRLFREGEVVELSPAEMDLLLVFAQRPNRALSRDHL 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G + +RSIDV+++RLR+++EE+P PR+++T G+GY FVP Sbjct: 177 LQALGGDDDGRFDRSIDVRVTRLRKLIEENPRQPRFLRTERGVGYRFVP 225 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILV+DD+ +LR LL YL +GF V N + + L++LD+M+P GL Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R ++ PII++TAK E+ D+I+GLE+GADDYI KPFN RE++AR+RAVLRR Sbjct: 65 MRAWNKEAE-TPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKA 123 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P A V+ G+ L + ++ + LT EF +L L++ P SR L+ Sbjct: 124 QPQAD-----VLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLL 178 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G+ Y ER+IDV I LR +E DP +PRYI+TV+G+GY F Sbjct: 179 DRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 144/225 (64%), Gaps = 5/225 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+++D++ +R L+ L +G++V + A+ E+ + + E L++LD+M+P DG + Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C LR +NP+PI+M+TAKG+ DR+ GL+ GADDY+ KPF+ ELLAR+RA+LRR Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E + A + FG+ ++++ + R + + T+ E+A+L+ L P EP+SR++ Sbjct: 123 E-----KRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERF 177 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +++ G R++D I+ LR +E DP PR+I+TV G+GY Sbjct: 178 LDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGY 222 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 136/226 (60%), Gaps = 11/226 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Y I +VDDD+ +R ++E YL ++G+ ++ +AE+ L L VLD+MLPG +G Sbjct: 4 YHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGY 63 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 CRR+R+ S PIIMV+A+ EEVD+I+GLE+G+DDY+ KPF+PREL+AR+ L+R Sbjct: 64 EFCRRIRAGSET-PIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWK 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A + + K K R ++ E + +TS EF VL L HP SRD+ Sbjct: 123 QMKSHAEQTAISALVLDKEK-----RLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDE 177 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 L++L G +Y +R +D I R+R+ +++ P ++TVWG GY Sbjct: 178 LLSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGY 218 >UniRef50_D0XTW3 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW3_9CAUL Length = 242 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 143/230 (62%), Gaps = 2/230 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL++D D+ RA + L+ ++V + ++ +QMDR+LT + +VLD+MLPGE G S Sbjct: 4 RILLLDADVEARAQMCDLLSRHEYEVVTASSGQQMDRILTTTAVDAVVLDIMLPGEGGFS 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C RLRSQ++ +I+V+A EE D +VGLEIGADDY+ KP+ RELLARIRAVLRR+ Sbjct: 64 VCNRLRSQNHSPGVIVVSAMAEESDVVVGLEIGADDYVAKPYRSRELLARIRAVLRRRQA 123 Query: 126 ELPGAPSQEEA-VIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + P ++ A V F ++LN+ TR++F + L+SGEF +LK L++ P++ + R Sbjct: 124 AMRPNPDEDRANVYRFDGWRLNVVTRQLFDPYSRAVELSSGEFNLLKTLLASPQQIVPRA 183 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +L R E I+V +SRLR + I+TV G GY+ Sbjct: 184 RLAQDPRTGERRDGSPQINVIVSRLRAKLARVQGGGDLIRTVRGQGYLLT 233 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 3/226 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ + L+E YL + F V +AE+ + +E L +LD+M+P GL Sbjct: 72 KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISGLE 131 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+++R + N PIIM+TAKG E+D+I GL +GADDYI KPF P E++AR++A LRR Sbjct: 132 LCKKIRERYN-YPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 190 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 G EE ++ LN T E F + + LT EF++L L +S ++L Sbjct: 191 YNMGTVKAEE-ILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEEL 249 Query: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + + + YS +I V I LR +E+ +P+YI+TVWG GY Sbjct: 250 FHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGY 295 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 137/235 (58%), Gaps = 2/235 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E KIL+V+DD + L+ L ++G+ S + L + F L++LD+MLP Sbjct: 1 MVEQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G + +++R + N P+++++AK EE D+I+GL +GADDY+ KPF EL AR++A L Sbjct: 61 VGGYEVLQKIREKGNT-PVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR N + +I ++N+ T E+ D + LT+ EF +LK + +PR+ Sbjct: 120 RRYLN-FSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++++L G Y E ++ V I RLR +E+DP++P YIQT+WG+GY V + Sbjct: 179 TKNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_B8IIA6 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIA6_METNO Length = 238 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 140/232 (60%), Gaps = 5/232 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I+VV+D+ LR +E YLTE GF+V A+ ++ + + +++LD+ LP E+GLS+ Sbjct: 5 IIVVEDEADLRQAVEEYLTEAGFRVIGAADGRELRAAVDQAEPDVVILDIALPAENGLSL 64 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--QA 124 R LRS+ + +I TA RI GLE+GADDY+ KP++ RELL R+R+VLRR ++ Sbjct: 65 ARWLRSRGSKAGLIFATAAQNATHRIAGLELGADDYVVKPYDLRELLGRVRSVLRRVIRS 124 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPLSRD 183 A +A G F L+L R +F P+PLT+ E +L A + P LSR Sbjct: 125 TVASPAAPAPARTVAVGLFTLDLDRRTLFDTSGTPVPLTAMEVDLLIAFATRPNRVLSRQ 184 Query: 184 KLMNLARG-REYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +L +A+G RE +RSID++I+RLRR +E P IQTV G GYVFVP Sbjct: 185 QLRTMAQGYRESDHSDRSIDIRITRLRRKIETG-TKPALIQTVRGEGYVFVP 235 >UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=C0D8Y6_9CLOT Length = 243 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 135/229 (58%), Gaps = 6/229 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG-EDGL 64 K+L+VDDD +R LL + + GF+ + A+ ++ L F L++LD+M+ G +DG Sbjct: 15 KVLIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALAQNRKFDLILLDIMMNGVDDGF 74 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 R LR+ N +PI++++ + E+ D + GL+IGADDYI KPFNP L A+I+A++RR Sbjct: 75 DAIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNK 134 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A I G F+ + T E F+ ++ +PL+S E ++K +S+ ++++ Sbjct: 135 K----AAYNAHNFITAGPFRYSNMTLEFFKNEQLIPLSSKENVMMKLFISNVGRVFTKEQ 190 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L L G E +I V IS LR +E++P PRYI+TVWGLGY F Sbjct: 191 LYELVWGNSIVD-ENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGYKFT 238 >UniRef50_B6R2K8 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B6R2K8_9RHOB Length = 258 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 137/239 (57%), Gaps = 13/239 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+ VVDDD +R +L+ L E GFQ ++ + L ES L ++DL L GE G+ Sbjct: 11 KVAVVDDDPAIREVLQELLHEYGFQALPCHGSKDLINLKELESLDLAIIDLKLDGESGMM 70 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + +RLR+ S PII++T G+EVD+IVGLE GADD++ KPFNPREL+ARIRAVLRR Sbjct: 71 LAQRLRT-SYDFPIILLTGTGDEVDKIVGLETGADDFLMKPFNPRELIARIRAVLRRYKR 129 Query: 126 ELPGAP-----------SQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALV 173 +P P + +I G R + + + LT+ E +L+ L+ Sbjct: 130 NVPAEPEPNVAKAPVPQASSAGIIPLGDLSFICDERRLLDTNLREINLTNSELRLLEFLI 189 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +P P+ R +L+ G M+R++DV I RLRR +E +P+ P ++QT G GYVF Sbjct: 190 ENPNRPIDRVELLEHLGGDLSRYMDRTVDVLILRLRRKIEANPSKPVFLQTRRGKGYVF 248 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 10/233 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+V+DD + L+ L + F + E R+ + L+VLDLMLP DGL Sbjct: 13 NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72 Query: 66 ICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C R+R Q S I+M+TAKGEE+DRI+GL GADDY+ KPF+PREL+AR+RA+LRRQ Sbjct: 73 VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQ 132 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFR----EDEPMPLTSGEFAVLKALVSHPREP 179 + G P + + F+++L + R E + LT EF +L +S+P Sbjct: 133 LRQ--GQPVGQ--IYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRV 188 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R +L+ G ++ ER +D I RLR+ +E DPA+P +I+TV GLGY F Sbjct: 189 WNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 141/227 (62%), Gaps = 4/227 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + KIL+VDD+ +R L+ +L++QG+ + N ++ + + SF L++LD+M+P DG Sbjct: 2 DTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C +R ++ +PI+M+TA+ E D++ GL+IGADDY+ KPF P EL+AR+ A+LRR Sbjct: 62 WEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRA 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 Q + F + K+++ ++F +D P+ LT EF +LK L+ +P++ +RD Sbjct: 122 VVNQTTQTKQ----LHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRD 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +L+ G ++ ER++D I +R ++++ I+TVWG+GY Sbjct: 178 QLLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGY 224 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 140/233 (60%), Gaps = 5/233 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ +IL+V+D+ L ++ LT F+V A+ Q + LL + L++LD MLP Sbjct: 17 MEGAVQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPD 76 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL +C++LR+ MP++++TA+ E D ++GLE GADDY+ KPF+ EL AR +A+L Sbjct: 77 GDGLLLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALL 136 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR L AP+++ +I F +++L +RE+ D P+ LT+ EF +L L HP++ Sbjct: 137 RRH---LSAAPTRQ--LIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVF 191 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SR +L++ G + E +++ I+RLR + P +QTVWG+GY F Sbjct: 192 SRTQLLDAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFT 244 >UniRef50_A9ANV0 Two component transcriptional regulator, winged helix family n=72 Tax=Proteobacteria RepID=A9ANV0_BURM1 Length = 262 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 141/231 (61%), Gaps = 5/231 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +++IL+V+DD+RL L+ YL + ++V +V + + + L++LD+ LPG+DG Sbjct: 29 SFRILLVEDDVRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSTRPDLVILDVNLPGKDG 88 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 ICR R + + IIMVTA+ E D ++GLEIGADDY+ KP PR LLARI+A LRR Sbjct: 89 FEICRDARQHYDGV-IIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRA 147 Query: 124 -ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP-LTSGEFAVLKALVSHPREPLS 181 A GAP E FGKF ++ R + D P LTS EF +L LV E +S Sbjct: 148 PARVAEGAPQPER--YTFGKFSIDRTDRSVVLPDGSTPDLTSAEFDLLWVLVCRAGEVVS 205 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 RD LM RG E+ ++R+ID +IS+LRR + +D ++P+ I+T+ GY F Sbjct: 206 RDDLMLQLRGVEFDGLDRTIDGRISKLRRKLRDDASNPQRIKTIRSKGYQF 256 >UniRef50_B2IFK7 Two component transcriptional regulator, winged helix family n=89 Tax=Alphaproteobacteria RepID=B2IFK7_BEII9 Length = 273 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 141/232 (60%), Gaps = 10/232 (4%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+VDDD R+RALL R+L +QG++V + NAE+ L +F L+VLD M+PGE+G + Sbjct: 48 LLIVDDDRRIRALLARFLADQGYRVTTAGNAEEATASLRNFAFDLIVLDAMMPGENGFDL 107 Query: 67 CRRLRSQSNPM---PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 RLR+Q + + P++M+TA E DR+ G E G+DDY+ KP+ PREL RI ++LRR Sbjct: 108 LTRLRAQPSDLAHVPVLMLTACTEPEDRVRGFEAGSDDYLGKPYEPRELALRIASILRRA 167 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P A S + FG F +L E+ + E + LT E +L+ L + E +SR+ Sbjct: 168 Q---PRAVSGPVTQVRFGDFTFDLERGELQQGGEIVRLTERERDMLRLLAENAGEIVSRE 224 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 L L G ER++DVQ++RLRR +E D A+P ++QT G GY + D Sbjct: 225 ALAGLGIG----GNERTVDVQVNRLRRKIERDLANPLHLQTARGAGYRLLVD 272 >UniRef50_B5ELJ1 Two component transcriptional regulator, winged helix family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ELJ1_ACIF5 Length = 226 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/228 (43%), Positives = 145/228 (63%), Gaps = 7/228 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+VDDD RL +L +L QG V AN +QM + L ++VLD MLPG+DG+S+ Sbjct: 4 VLIVDDDRRLAEMLREFLQAQGLAVLLAANGQQMRQQLAAGPVDVIVLDWMLPGQDGISL 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 + LRS++ P PI+M++A+GEE +RI+GLE G DDY+ KPFN RELLAR+R +LRR + Sbjct: 64 AKDLRSKAGP-PILMLSARGEEDERILGLESGVDDYLAKPFNARELLARLRVLLRRSGKD 122 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + ++FG F L++ R ++R D + + E +L PR LSRD L+ Sbjct: 123 ------EGSDKLSFGDFCLHVAERRLYRGDAEVDVNPAEMDLLLVFAQRPRRILSRDLLL 176 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L G E +RSIDV+++RLR+++EE+P PR++QT G GY F P Sbjct: 177 QLLGGEEDGRFDRSIDVRVTRLRKVIEENPRQPRFLQTERGAGYRFTP 224 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I V++DD + L++ L G+ +R + + R+ L +LD+M+PG DGL + Sbjct: 5 IFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGLDV 64 Query: 67 CRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 CRRLR+ + + +PII VTA+ E DR++GLE+GADDYI KPF PRELLAR++AVLRR Sbjct: 65 CRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRR-- 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 E P PS +I+F ++ ++ E T+ EF +L L HP SRD Sbjct: 123 FERPSTPS----LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDH 178 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L++ G RS+DV + R+R +E DP +PR+++TV G GY F Sbjct: 179 LLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRF 226 >UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacteria RepID=Q3JG93_BURP1 Length = 288 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 137/234 (58%), Gaps = 4/234 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 Y++L+++DD RL L+ YL F V V + + L++LDLMLP DG Sbjct: 55 KYRVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDG 114 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR- 122 + +CRR+R+ SN +P++++TA+ + D++ GLE GADDY+ KP PR L+AR RA+LRR Sbjct: 115 MEVCRRIRAFSN-VPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRV 173 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Q AP+ E V FG+ ++ R + EP+ L + EF +L L LSR Sbjct: 174 QPGASVEAPASETLV--FGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSR 231 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 D ++ RG E+ ++RS+D IS+LRR E+ + P I+T+WG GY+F P Sbjct: 232 DDILKQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSA 285 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 143/239 (59%), Gaps = 13/239 (5%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++IL+V+D+ + L+ L ++G++V V + ++ + L++LDLMLPG DGL Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61 Query: 65 SICRRLRSQSN-PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +CR++R S+ +P+IM+TAK +E+++IVGLE+GADDY+ KPF+PRELLAR++A LR + Sbjct: 62 EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 124 ANELPGAPSQEEAVIAF------------GKFKLNLGTREMFREDEPMPLTSGEFAVLKA 171 EL SQ+ + F G + + E++ + LT EF +L Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 172 LVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +V++ + L+R+KL+ G ++ R++DV I LR+ + E P ++TV G+GY Sbjct: 182 MVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 134/232 (57%), Gaps = 3/232 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDD+ +R LL YLT +GF+V+ N + + F +++LDLMLP DG Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+++R + + + I+M+TA+ E D++ GL IGADDY+ KPF P ELLAR+ +++RR A Sbjct: 75 VCKKIR-EKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSA- 132 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + ++EA + F ++ RE+ D + T EF + +L + SR++L Sbjct: 133 -ITQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREEL 191 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +NL G EY R +D I +R ++ IQTVWG+GY F G+ Sbjct: 192 VNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNGAGT 243 >UniRef50_A1S1W0 Response regulator receiver protein n=1 Tax=Shewanella amazonensis SB2B RepID=A1S1W0_SHEAM Length = 237 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 138/234 (58%), Gaps = 7/234 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL ++DD +L L++ +L GF+V + +AE L SF L++LD+ LP EDG+S Sbjct: 4 KILYIEDDHKLAGLVKNFLQSHGFEVTHLPSAEGALEQLYYGSFDLLLLDIGLPTEDGIS 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--- 122 +CR++R + I+ +TA+ VD + GL GADDY+ KP P LLARI+ L+R Sbjct: 64 LCRQIRDRFTGQ-ILFMTARRSAVDEVEGLMAGADDYLTKPVAPEILLARIQTRLKRREP 122 Query: 123 -QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 + E+ A Q E + FG+ + L R+ F ++E + LT+ EF +L L H + + Sbjct: 123 QEMVEVDTAKPQSE--MHFGRLCIRLAARQAFWDEESLRLTTAEFDILAQLAKHAGQIVC 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 R+ L G Y + R++D +ISRLRR + ++ P I+T+WG GY+FVPD Sbjct: 181 REDLFKYTTGAPYDGLNRTMDNRISRLRRKLGDNMDDPFKIKTIWGKGYLFVPD 234 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 138/232 (59%), Gaps = 3/232 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL++DD+ + L+ + G+ + + + RE+ L+++D+M+P DG + Sbjct: 3 KILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDGFT 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA- 124 CR +R + P+I ++AKG+ VD+ VG + G DDY+ KPF+PRELL I A LRR + Sbjct: 63 TCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRASM 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 P AP + ++ G+F L+ G + ++ E + LT EF + AL S P LS+++ Sbjct: 123 AAAPVAPRGD--ILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L+ A G+E+ SI V I +LR VE+DP+ PR IQTVWG+GY F P+G Sbjct: 181 LVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEG 232 >UniRef50_B0S1J7 Two-component response regulator n=16 Tax=Clostridia RepID=B0S1J7_FINM2 Length = 239 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 139/225 (61%), Gaps = 3/225 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+V+D+ + ++YL +GF+V + ++ ++ + +++LDLMLP G Sbjct: 10 KILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLMLPKISGEK 69 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + +RS++ P+IMVTAK +E + + GL++GADDYI KPF+ + L+ +++ +LRR Sbjct: 70 VMEVIRSRTET-PVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRV-- 126 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E G P ++ G+ ++ ++ E + LTS EF ++K L S+P + +RD++ Sbjct: 127 EKLGLPKSDKIYFDNGRVSISFDDNTFIKDGESISLTSNEFQIIKTLFSNPNKIFTRDEI 186 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + L+ G +Y A +R+ID I +R +E++P PRYI+T++G+GY Sbjct: 187 IELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGY 231 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 142/232 (61%), Gaps = 7/232 (3%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 E +IL+V+D+ +R + YL + + V +V + + ++ F L++LDLMLP Sbjct: 6 SETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRV 65 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G +CR +R S+ +PIIM+TAKGE DRI+GLE+GADDY+ KPF+PREL+AR+RA+LR Sbjct: 66 PGERVCRAIRDNSD-VPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 122 R-QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 R A+ P + V+ FG+ +++ ++ + + LT+ EF +L L +P Sbjct: 125 RVHADSEP-----QREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVY 179 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SR +L+ G ++ ER+ID + LR + ++P +P+++ TV G+GY F Sbjct: 180 SRMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_A1VTZ3 Two component transcriptional regulator, winged helix family n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VTZ3_POLNA Length = 255 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 135/227 (59%), Gaps = 7/227 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L++DDD L ++ L QG Q+RS A A L + +++LDLMLP +GL + Sbjct: 31 VLMIDDDAELAGMVGELLLGQGMQLRSAATAALGLAALAQRQPDVLLLDLMLPDANGLDV 90 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CRRLR N +P++M+TA+G+ DR++GLE+GADDY+ KPF+PREL+ARIRA+ RR Sbjct: 91 CRRLRESGNDLPVLMLTARGDPFDRVLGLELGADDYLGKPFDPRELVARIRALARR---- 146 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 G ++ + F L+L R + LTS EF +L AL S P +SR+ L Sbjct: 147 --GQSARRSTQLRFNGLSLDLLARRATCPAGALALTSSEFKLLLALASQPGASVSREALC 204 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + Y ++R++DVQ++RLR+ + +I+TV G GYVF Sbjct: 205 AAVQPGSYMPLDRAVDVQVARLRKKLAA-AGEREWIETVRGEGYVFT 250 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 12/232 (5%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDD+ + L+ L + +QV SV N ++ + +++DLMLP DG+ Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR---- 122 +++R +PIIM+TAK +VD+I+GLE+GADDYI KPF+P+ELL+RI+ +LRR Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 123 -QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 E+ E I F + + + +E + LT EF +L+ L + + LS Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVK-------KNNEKIQLTPNEFKLLRYLYKNANQVLS 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 RD+++ G EY R +D+ IS LR +E DP HP+ I+T+ G GY FV Sbjct: 178 RDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 162 bits (411), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 141/235 (60%), Gaps = 7/235 (2%) Query: 1 MQEN---YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLM 57 M EN Y +L+++D+ L +L+ YL ++G+QV + + L +++ ++VLDLM Sbjct: 1 MSENTNCYTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLM 60 Query: 58 LPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 LP G I R++R + PI+M+TAKG E ++I GL IGADDY+ KP +PRE++AR++ Sbjct: 61 LPNMSGEEIARKIRKEQE-TPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLK 119 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 +LRR E PG QE +I G+ ++ ++++ + LT EF +L L +P+ Sbjct: 120 TILRRVGKE-PGRIQQE--IITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPK 176 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + SR+ L + G + R+ID I LRR +E++P P +I+TV+G GY F Sbjct: 177 KVFSRENLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 142/227 (62%), Gaps = 6/227 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+V+DD + L L ++G++V + + + L++LD+MLP +DG Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+ +R SN +PIIM+TAK EEVD+++GL++GADDYI KPF +ELLARI AVLRR + Sbjct: 63 VCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +L S+ + ++A F+++L R + + + + L+ EF +LK L+S P +RD + Sbjct: 122 DL----SKSQKIVA-PPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMI 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G + R++DV I LR VE+DP+HP+YI TV LGY F Sbjct: 177 IKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 142/232 (61%), Gaps = 13/232 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH--LMVLDLMLPGEDG 63 KILV++D+ + LL+ Y ++ F+V + N ++ L + H L+VLDLMLPG DG Sbjct: 4 KILVIEDEADIVTLLKHYFLQEHFEVTTTGNG--LEGLSLARTLHPDLIVLDLMLPGLDG 61 Query: 64 LSICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 LS+ R L+ + +P++++TAK +E DRIVGLE+GADDYI KPFNP+ELLARI+A+LR Sbjct: 62 LSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R E P+Q + L++ E D + LT+ EF++L ALV + L Sbjct: 122 RTEQE----PAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLD 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 R L++L G +Y +R++DV I RLR+ + + + +QTV +GY F+ Sbjct: 178 RQMLLDLVWGADYEGTDRTVDVHIRRLRKKLGD---YQDRVQTVKQIGYKFM 226 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 145/239 (60%), Gaps = 14/239 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRE--SFHLMVLDLMLPGEDG 63 KIL+V+D+ + ++ + ++ + + + + + S+ ++ LDL LPG DG Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + + +++R QS +PIIM+TA+ E D+++GLE+GADDY+ KPF+P L+ARI+A+ RR Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 124 --ANELPGA-PSQEEAV------IAFGKFKLNLGTREMFREDEP-MPLTSGEFAVLKALV 173 +E GA +Q E V + FK++ TRE + DEP + LT EF +LK L Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +PR+ SR++L+ L +Y ER++D I +LR+ +EE P+ IQTVWG+GY F Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEE--VGPQVIQTVWGVGYKF 238 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 142/238 (59%), Gaps = 4/238 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E ++L+V+DD + + E YL GF + ++ LL +ESF L++LDLMLPG Sbjct: 1 MAEKRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 + G ICR +R Q + +PI+MVTA+ E VD+I GL +GADDYI KPF+P EL+AR+ A L Sbjct: 61 KSGYDICREIREQVD-IPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANL 119 Query: 121 R---RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 R R ++P ++E I ++ + + ++++ + + + EF +LK L +P Sbjct: 120 RQYDRMMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPN 179 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 SR++L G +Y ++ V I+R+R +E+D +P+ ++TVWG GY F D Sbjct: 180 IVFSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_A4J7U5 Two component transcriptional regulator, winged helix family n=89 Tax=Firmicutes RepID=A4J7U5_DESRM Length = 239 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 138/226 (61%), Gaps = 1/226 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQ-VRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KILV++D+ +R+ + L GFQ V + + E ++++ + +LD+MLPG DG Sbjct: 3 KILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDGF 62 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR L+ + + IIM+TAKG+E D++ GL +GADDY+ KPF+P+EL+ARI A++RR Sbjct: 63 EVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRRLQ 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + E + G + + L ++ ++ ++ + LT EF ++K + + + +SRD Sbjct: 123 PFNTQLGGEAENRLCSGIYCICLDKKKFYKGEKEIDLTPKEFEIIKLFLHNVDKAISRDD 182 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 ++N GR Y + +DV I R+R+ +E DP++P ++ VWG GY Sbjct: 183 ILNQIWGRHYIGDLKIVDVNIRRIRQKIENDPSNPATLEKVWGYGY 228 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 130/214 (60%), Gaps = 7/214 (3%) Query: 20 LERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPI 79 ++ YL + GF ++ L+ + L+VLDLMLP DGL++ + +R SN PI Sbjct: 18 MQLYLEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTSNT-PI 76 Query: 80 IMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIA 139 IMVTA+ + +RI GLE+GADDY+ KPFN REL+AR+RAVLRR P Q ++ Sbjct: 77 IMVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRR------SQPIQASQMLK 130 Query: 140 FGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMER 199 G +L+L +P+ L+ + A+L + HP + LSR++L+ +Y+ +R Sbjct: 131 RGPIELDLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDR 190 Query: 200 SIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 S+D I+RLR+ +E D +P+YI TV+GLGY FV Sbjct: 191 SLDAHIARLRQRIEHDRTNPQYIVTVYGLGYKFV 224 >UniRef50_D0XTW5 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW5_9CAUL Length = 241 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 141/228 (61%), Gaps = 6/228 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+V+DD+ LR + YL + V +A +++ + + VLD+ LPGEDGLS Sbjct: 12 EILLVEDDVELRREMAAYLRDNDHLVHEAGDAASARKIMAERAIQVAVLDINLPGEDGLS 71 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR L P I+M+TA G+ +DRI+GLE+GADDY+ KP PRELLAR++A+LRR+ Sbjct: 72 LCRSLAGDGGPA-ILMLTALGDPIDRILGLELGADDYVVKPIMPRELLARVKAMLRRRP- 129 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEP-MPLTSGEFAVLKALVSHPREPLSRDK 184 PG +++ + F F+L+L R++ + + LT E A+L AL+ R+ + RD+ Sbjct: 130 --PGPAARKTNIYRFADFRLDLAARQLRAPNGAVLLLTRSELAILSALLDRDRQVVPRDE 187 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ L RG E + R++D+ ISRLRR + +D I+T G+GY+ Sbjct: 188 LIALLRGDETEEVGRAVDLHISRLRRKI-QDQTDRELIRTYRGVGYML 234 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 144/239 (60%), Gaps = 8/239 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH--LMVLDLML 58 M+ ++ ILV DD+ ++ +L YL + GF V V N ++ R L E H L++LDLML Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRL--EGLHPSLIILDLML 58 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 P G +C +R++S +PI+M+TAK + DR+ GL+IGADDY+ KPFNP E++AR++A Sbjct: 59 PDIPGEEVCMAVRARS-AVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQA 117 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 +LRR + P A E G ++ ++ +++ LT+ E+ +L L HPR Sbjct: 118 ILRRTMLDHPLADRLE---YRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRR 174 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 SR++L+ G ++ R+ID + LR +E+DP P YIQTV+G+GY F DG+ Sbjct: 175 VFSREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDGN 233 >UniRef50_Q7ULL1 Two-component system response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7ULL1_RHOBA Length = 239 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 134/235 (57%), Gaps = 12/235 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+ +DD RA LE L +G+ V +V + +++ + F L+ LD+M+P + G Sbjct: 3 RILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSGFD 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR++ + P+I +TAKG+E+D++VGLE+GADDYI KPF E++AR++AVLRR Sbjct: 63 VCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRR--- 119 Query: 126 ELPGAPSQE------EAVIAFGKFKLNLGTREM--FREDEPMPLTSGEFAVLKALVSHPR 177 APSQ I F L + ++ R + + LT+ E +L L Sbjct: 120 -CQPAPSQTPIAKDPTTHITFNMDDLQITPSKLRATRGETTIELTARELQILILLHDADG 178 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + + R L G R++D +S+LR+ +E DP HPR IQTV+GLGY + Sbjct: 179 DVVHRQTLFQECWGHNRVPNSRTVDQTVSQLRKRIERDPKHPRIIQTVYGLGYRY 233 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 132/230 (57%), Gaps = 6/230 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N ILVV+DD L +L + L +G+ V + L L++LDLMLP G Sbjct: 2 NNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L +C+RLRS++ PIIM+TA+G + D++ GL +GADDY+ KPFN ELLARI AVLRR Sbjct: 62 LEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 PSQ ++ G +++ + + + + L+S EF VL+ L + + R+ Sbjct: 122 HQ---SKPSQH---VSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDRE 175 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 K+ G + + R+ID I+RLR +E++P PRYI TV G GY FV Sbjct: 176 KIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 135/234 (57%), Gaps = 13/234 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL---------TRESFHLMVLDL 56 +ILVV+D+ +R ++ L ++GF V A+ E+ L+VLDL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 57 MLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARI 116 MLP +GL CR LR Q +PI+M++AK E DR+VGLEIGADDY+ KPF REL+AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 117 RAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 RA+LRR N+ P++ AV+ + KL + +D + L+ EF +L+ + HP Sbjct: 145 RALLRRSQNQ----PAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHP 200 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 R SRD+L+ G ++ ++IDV I LR +E +P++P Y+ TV G GY Sbjct: 201 RRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGY 254 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 137/238 (57%), Gaps = 1/238 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + +IL+V+DD + +L +L ++ ++V A+ + RLL + ++ ++LDLMLPG Sbjct: 1 MDQPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL ICRR R+ + PII+ +A+ EV RI+GLE+GADDY+ KPF+ EL+AR++A+L Sbjct: 61 VDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + L + + ++ RE + + LT EF +L HP + Sbjct: 121 RR-VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVF 179 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 SR L+N G ++ E +++ I+RLR +E DPA P I TVWG GY G + Sbjct: 180 SRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQR 237 >UniRef50_A8GHG0 Two component transcriptional regulator, winged helix family n=11 Tax=Enterobacteriaceae RepID=A8GHG0_SERP5 Length = 226 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDDD+ L +L YLT +GF V + + M+LD+MLP G+ Sbjct: 2 KILLVDDDLELGTMLSEYLTGEGFNATLVLTGKAGVEGALSGDYTAMILDIMLPDMSGID 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R +R +S MPIIM+TAKG+ +DR++GLE+GADDY+PKP PREL+AR+RAVLRR + Sbjct: 62 VLRDVRKKSR-MPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRR-FD 119 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E P E A I FG+ LN TR + LT+ EF +L+ L+ P +S+D+L Sbjct: 120 ERPDEVDDEIA-INFGELTLNPSTRSSEWRGKAFDLTASEFNLLELLLRAPERVVSKDEL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 GR A +RS+DV IS +R+ + + I+TV +GY Sbjct: 179 SEKGLGRPREAYDRSVDVHISNIRQKLGALTDNALSIETVRSIGY 223 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 3/229 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+ +DD + L+ +L ++G+Q+ A+ + RL+ + L++LD+M+P DG + Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR--RQA 124 R +R Q MPII ++AK + D+I GL +GADDY+ KPFNP ELLAR+ A LR RQ Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 N+ AP+ + I G ++ R + ++ + LT EF +L L SHP++ S + Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 185 LMNLARGRE-YSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G Y + ++ V I LR+ + ED H ++I+TVWG+GY F Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 + VV+DD + L+ +L GF VR+ + + +L +LD+M+PG DGL I Sbjct: 5 VFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGLEI 64 Query: 67 CRRLR-SQSNPM-PIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 CR++R S+S M P+I +TAK E D+I GL++GADDYI KPF+PREL+ARI+AVLRR Sbjct: 65 CRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRRFE 124 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 LP AV+ G ++ G + + T+ EF +L+ L HP +RD+ Sbjct: 125 RPLP------PAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQ 178 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L++ + RS+DV + R+R +EE+P PRY++TV G GY F Sbjct: 179 LLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRF 226 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 134/233 (57%), Gaps = 4/233 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+VDDD +R L YL GF V + L + +MVLDLMLP DG + Sbjct: 1 MLLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQV 60 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 +R + +P+IM+TA G+E DRI+GL+ GADDY+ KPF+PREL++R+RAVLRR Sbjct: 61 LAEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL- 119 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 AP+ E ++ +++ R + D+ + LT EF +L L SHP++ SR+ L+ Sbjct: 120 ---APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLL 176 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 + G ++ R++DV ++RLR+ + Y++TVWG GY FV A Sbjct: 177 DRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKARSA 229 >UniRef50_B5J7Y1 Response regulator receiver domain protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7Y1_9RHOB Length = 298 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L++DDD ++ + L+ + G +V + ++ +M + L E ++LD ++PG + ++ Sbjct: 59 LLIIDDDAKIVSFLKGFFESHGIKVSTGSSGNEMWQALESEKIDFVILDALMPGTNENTL 118 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C L+SQSN +P +++TA E + IVGLE GADDY+ PFNP ELLAR+RAV RR + Sbjct: 119 CSELKSQSN-VPTVLMTALDGETNIIVGLEAGADDYVVNPFNPCELLARMRAVSRRNNSN 177 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREM-FREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + + +F F+ + RE+ E+ + L+ EF +LK V P E + R+ L Sbjct: 178 FSMSQTNISTIFSFSSFQFDTRRRELRASENVLVHLSRTEFELLKIFVHRPSEAIDRNTL 237 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L RG E A +RSID+ +SRLR + +I+TV G GY+F Sbjct: 238 SELLRGHELEAFDRSIDLHVSRLRSKLGPRVGGGNFIKTVRGTGYMF 284 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 137/227 (60%), Gaps = 3/227 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILV++DD + +L YL +G++V + E R HL+++DLMLP DG + Sbjct: 16 ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFEV 75 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CR++R QS +PII+V+A+ ++D+I L +GADDYI KPF+P EL+AR+++ LRR + Sbjct: 76 CRQVRQQSE-VPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRR-YHR 133 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 G QE+ V++F +N R + + +P+ LT EF +L L P + S+++L Sbjct: 134 YNGLKEQEK-VLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLY 192 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 N ++ + R++ V I +RR + + HPR+I TVWG+GY F+ Sbjct: 193 NRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFI 239 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K++VVDD+ + +LE L ++G+ V + L+ E +++LD+MLPG DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +R + MPIIM+TAK E+D+++GLE+GADDY+ KPF+ REL+AR++A LRR + Sbjct: 64 VCREVRKKYE-MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + I + + + E + LT EF + L H + ++R+ L Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + G +Y R++DV I RLR +E+DP+HP YI T G+GY Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 141/234 (60%), Gaps = 10/234 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+++DD + L+ YL +GF+ V++ L R ++LDLMLPG DGL+ Sbjct: 4 KILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLT 63 Query: 66 ICRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + R ++ + P+++VTAKGEE DR+VGLE+GADDYI KPF+P+E++AR++AVLRR+ Sbjct: 64 VNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRRR 123 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + ++ G +++G E E P PLT+ EF +L AL+ L R+ Sbjct: 124 ETQ-----QRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRE 178 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 L+N G +Y +R++DV I RLR+ + E A +++TV +GY F +G Sbjct: 179 TLLNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEGK 229 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 + +L++DD++ + L+E YL +G++V N ++ E H++VLD+M+PG DG Sbjct: 2 FNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C ++R N +PIIM++AK ++VD+I GL GADDY+ KPFNP EL+AR+++ +RR Sbjct: 62 QVCMKIRKDYN-IPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 125 --NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 NE S + +I F +N ++ + + LT E+ +L L ++ S Sbjct: 121 FLNE-KSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSA 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + + +Y ++ V I RLR +EE+P P+ I+TVWG+GY Sbjct: 180 EDIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGY 227 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 138/235 (58%), Gaps = 7/235 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANA-EQMDRLLTRESFHLMVLDLMLP 59 M+ KILVVDDD + L+E +L +G++VR +A + L + E L +LD+M+P Sbjct: 21 MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G DGLS+ +++R S+ +P+IM++AK ++D+IVGL GADDY+ KPFNP EL AR++A Sbjct: 81 GMDGLSMVKKIRETSH-IPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKAN 139 Query: 120 LRR----QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSH 175 LRR + + G S +E +I G +N TRE+ D+ LT E+ +L L S+ Sbjct: 140 LRRFTEFNSGQKAGVDSGDE-IIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASN 198 Query: 176 PREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 P S D + + ++ V I RLR +E D + + I+TVWG+GY Sbjct: 199 PGRVFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGY 253 >UniRef50_A8GAJ9 Two component transcriptional regulator, winged helix family n=54 Tax=Gammaproteobacteria RepID=A8GAJ9_SERP5 Length = 246 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 140/242 (57%), Gaps = 15/242 (6%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRE-SFHLMVLDLMLPGEDGLS 65 +L+VDDD + LL L E F V + + LL+++ L++LDL+LP +GL Sbjct: 5 VLIVDDDPAICDLLCDVLNEHVFSVHACHRGSEALTLLSQQPDIALVLLDLILPDTNGLL 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + +++ +P++M+T G E D +VGLE+GADDYI KPFNPR ++AR +AVLRR Sbjct: 65 VLQQIHRLRPDLPVVMLTGLGSESDVVVGLEMGADDYIAKPFNPRVVVARAKAVLRRT-- 122 Query: 126 ELPGAPSQEEAVIAFGK---FKLNLGTREMFR------EDEPMPLTSGEFAVLKALVSHP 176 GA + E A K ++ N + R + +P+ LT GE+ +L ALV H Sbjct: 123 ---GALALEPATAGRNKPEGWQFNGWCLDTARCTLHNPQRQPVDLTQGEYGLLLALVQHA 179 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 R+ L+RD+L+ L +R+IDV I RLRR +E +P P I+T+ GLGYVF D Sbjct: 180 RKVLTRDRLLELTHSETLEVFDRTIDVLIMRLRRKIEINPHQPELIRTIRGLGYVFAADV 239 Query: 237 SK 238 S+ Sbjct: 240 SQ 241 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 140/235 (59%), Gaps = 19/235 (8%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILV +D+ +R+ + L G++V N + +++F +++LD+M+P DG + Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--- 122 +C + RS+ + IIM+TA+ E D+++GL +GADDYI KPF+P ELLARI+++LRR Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 123 -----QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 Q EL P F+++LG + + + + +T E+ +L + + Sbjct: 123 LRRRKQPRELVSGP-----------FRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNED 171 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + +SRD+L++ G Y +++DV I RLR+ +EE+PA P++I+T+WG GY + Sbjct: 172 QVMSRDELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I+VVDD+ +R L+ YL +G++V N + LL +E L++LD+M+P DG+ Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C ++R + N MPIIM++AK E++D+I GL GADDY+ KPFNP EL+AR+++ LRR Sbjct: 66 CTKIREEKN-MPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKF 124 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + +I + +N T E+ ++ + LT EF +L+ L + S +K+ Sbjct: 125 NVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIY 184 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 E+ + ++ V I +LR +EE+P P+Y++TVWG+GY Sbjct: 185 ERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGY 228 >UniRef50_C8Q1W1 Two component transcriptional regulator, winged helix family n=1 Tax=Pantoea sp. At-9b RepID=C8Q1W1_9ENTR Length = 261 Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 134/234 (57%), Gaps = 4/234 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + IL+V+DD + L +L +G+ + +AE L + L++LDLMLPGE G Sbjct: 26 DTHILIVEDDAEISRSLATFLQAKGYTATTSDSAEAGLLFLKTHAPDLILLDLMLPGESG 85 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L CR++RS +P PIIMVTA + +D +VGLE+GADDY+ KPF+ LLARIRAVLRR Sbjct: 86 LDFCRKIRSPDSP-PIIMVTALDDPIDNVVGLELGADDYVIKPFDLNVLLARIRAVLRRT 144 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPM--PLTSGEFAVLKALVSHPREPLS 181 + EAV+ F F +R R + PLT E +L L H ++ LS Sbjct: 145 SAIETAQKPVGEAVLQFSGFTF-YPSRRFLRSPTGIRKPLTGVETDLLLVLCQHVKKVLS 203 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 R+ L+ L RG E RSID+ ISRLRR + D + +I+T GY+F PD Sbjct: 204 REDLIQLTRGSEAPLSMRSIDLLISRLRRKLVTDDTNEEFIRTFRNNGYMFRPD 257 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 140/230 (60%), Gaps = 8/230 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESF--HLMVLDLMLPG 60 E +IL+VDD+ L L++R L ++GF A+ + D E+F HL +LD+MLP Sbjct: 2 EQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLK-DGFDVFETFRPHLAILDVMLPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +G +C+++R+QSN +PI+ ++AK EEVD+++GL IG DDYI KPF+P+E+ R++A L Sbjct: 61 GEGYQLCQQMRAQSN-IPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + AP E + G F++N E++ E + LT+ E +L + +P L Sbjct: 120 RRVS--MMEAPVAETTTV--GPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRIL 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 S++ L G + + ++ V I RLR VE +P+ P YI+TV GLGY Sbjct: 176 SKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGY 225 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 129/230 (56%), Gaps = 6/230 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N ILVV+DD + + RYL G + A+ + DRL R L+VLD MLPG DG Sbjct: 11 NAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDG 70 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L++C R R P++M+TA+ EE R+ L GADDY+ KPF+ +EL+AR++A+LRR Sbjct: 71 LALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRA 130 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 S + ++ ++ TR++ P+ L + EF +L L HP SRD Sbjct: 131 YASGYRDCSPKNGLL------VDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRD 184 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +L+ G ++ R+IDV + +LR +E DP P Y+ TVWG+GY F Sbjct: 185 ELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL++DD+ + L++ YL + GFQV + N L + L++LD++LP +GL Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+ LR + PI+ ++ K ++D+I+GL +G DDYI KPF+P EL+ARI A LRR Sbjct: 65 LCQNLRKITES-PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRI 123 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 S + +++ ++ ++ +D+P+ LT EF +L L HP S +L Sbjct: 124 LTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQL 183 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + G + R++ V IS LR+ +E+DPA+P+ I T+ G+GY Sbjct: 184 YDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGY 228 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 139/223 (62%), Gaps = 2/223 (0%) Query: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 ++V+DD + +++ YLT++GF + + E+ RL + S+ L++LD+MLP +G+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 68 RRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANEL 127 + +R +SN +P++M++AK +VD+ +GL GADDYI KPF+ EL AR++A +RR Sbjct: 61 KIIREKSN-IPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 128 PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMN 187 P+ + VI + +++ + + EP+ LTS E+ +L S+P++ +++++ Sbjct: 120 AEEPAVNK-VIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYR 178 Query: 188 LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 EY + I+V + RLR +E+DP+ P+YI+T+WG+GY Sbjct: 179 SVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGY 221 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDD+ + L+E L G+ VR V++ E + +L L+VLDLMLP DG+ Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR QSN +PI+M+TA + D+I GL+ GADDY+ KPF+P+EL++RI+A+ RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRR-IQ 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 LPG E G+ + RE+ + + LT EF +L L H + LSR +L Sbjct: 123 TLPG--QAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQL 180 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 ++ + R +DV IS LR +E++ P YI TV +GY Sbjct: 181 LHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGY 225 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 139/232 (59%), Gaps = 7/232 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL VDDD ++ +L+ L ++GF+V + ++ E+ + + S L++LDLM+PG DG Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 ++L++Q +PII+++A+ EEVDR+VG +G DDY KPF+P EL R++AVLRR Sbjct: 64 TYQKLKAQRE-VPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRL-- 120 Query: 126 ELPGAPSQE-EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 G P E ++ +G L+ R + + + LT +F +L + S+P ++ Sbjct: 121 ---GEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L++ + + ++ V I RLR VE DP++P YI+TVWG+GY F +G Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYEG 229 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDD+ LR +L YL ++GF V + + + E L+VLDLM+P G Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R +S P+I++TAK E+ D+I+GLE+GADDY+ KPFN REL+ARIRAVLRR + Sbjct: 64 LRAFAKESR-TPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRR-TQQ 121 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P P V+ L+ R + + LT EFA+L L++ P + SR L+ Sbjct: 122 TPLEPD----VLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLL 177 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G + ER+IDV I LR +E DP HP+YI+TV+G+GY F Sbjct: 178 DRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >UniRef50_Q7M8N6 RESPONSE REGULATOR OMPR-CheY-like and winged-helix DNA-binding domain n=1 Tax=Wolinella succinogenes RepID=Q7M8N6_WOLSU Length = 235 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 139/224 (62%), Gaps = 4/224 (1%) Query: 9 VVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICR 68 +++DD ++ +L YL + ++ R + + F +++LD+ LP +GL +C+ Sbjct: 14 LIEDDRQMCEILTEYLKAYAIETHYFRLPDEGIRAIDQGGFDIVILDINLPQMEGLEVCQ 73 Query: 69 RLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANELP 128 L+ + + +PII+++A+G DR++GLE+GADDY+PKPF+PREL+ARIRA LR+++ P Sbjct: 74 ILK-ERHKIPIIIISARGSVSDRVLGLELGADDYLPKPFDPRELVARIRAALRKESGSTP 132 Query: 129 GAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNL 188 A + +FG F L+ E+ + E +P T GE+ V L+ H + L+RD +++ Sbjct: 133 LALGSKR---SFGVFALDEEALEIDKGGEAIPFTKGEYEVFALLLKHEGKALTRDFIVDN 189 Query: 189 ARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + ++ +S+D I R+R + +DP +PRYI++V G+GY F Sbjct: 190 TEALRWESVGKSVDTIIGRIRVKIGDDPKNPRYIKSVRGVGYRF 233 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 137/230 (59%), Gaps = 10/230 (4%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESF-HLMVLDLMLPGED 62 N ILVV+D+++L +E L +G+ V +V N RES L++LD MLPG Sbjct: 3 NPCILVVEDEVKLAQFIELELKYEGYTV-TVVNDGLSGLTTARESNPDLILLDWMLPGIS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL IC+RLR + +PII++TAK + DR+ GL+ GADDYI KPFN ELLAR+RA LRR Sbjct: 62 GLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 E P ++ F LN TRE+FR + LT+ EF +L+ L+SHP++ LSR Sbjct: 122 NHEEDPD-------LLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSR 174 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 D+++ G ++ I+V + LR +E + R IQTV G+GYV Sbjct: 175 DQILERVWGYDFMGDSNIIEVYVRYLRLKLEAE-QEKRLIQTVRGVGYVL 223 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 135/227 (59%), Gaps = 9/227 (3%) Query: 7 ILVVDDD-MRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+++DD + LR L + + E G+ V++ + + +L L+VLDLMLP +G Sbjct: 7 ILIIEDDPVMLRGLKDNFEFE-GYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYE 65 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 ICR LR + MPIIM+TAKG+E D ++GL++GADDY+ KPF+ +ELLAR+ A LRRQ Sbjct: 66 ICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRK 125 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Q V FG + + R + R + +PL+ EF +L LV++ LSRD++ Sbjct: 126 -------QTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRI 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 M+ G + RSID ++ LR +E DPA PR ++TV GY F Sbjct: 179 MSTVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKF 225 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 144/237 (60%), Gaps = 4/237 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 YK+LV++DD+ +R +L YL+E+G+ VR E+ R++ + +++LDLMLP DG+ Sbjct: 2 YKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGM 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ- 123 +C +R +S+ +PI++++ K E +R+ L+ GADDY+ KPF+ E+ AR+ A++RR Sbjct: 62 GVCASIRERSH-VPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQ 120 Query: 124 --ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 A E A + E +L+ R + + + T EF ++K +SHP + S Sbjct: 121 FSATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 R++L+N RG + +R+IDV I LR+ +E++P PR I+TVWG GY + D S+ Sbjct: 181 REELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTDHSQ 237 >UniRef50_Q2S9I1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=10 Tax=Gammaproteobacteria RepID=Q2S9I1_HAHCH Length = 252 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/237 (39%), Positives = 144/237 (60%), Gaps = 5/237 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 N+++L+V+DD L +L++ YLT+ GFQV VAN R + + L++LD+MLPG Sbjct: 10 HNHRLLLVEDDQELASLIQDYLTKNGFQVAVVANGLDAVREILTQRPALVILDVMLPGLS 69 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ +CR+ R N I+M+TA E++D+++GLE+GADDYI KP PR LL+RIRA+LRR Sbjct: 70 GMDVCRQARLDYNGF-ILMLTALDEDMDQMLGLELGADDYIVKPVQPRLLLSRIRALLRR 128 Query: 123 QANELPG----APSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 + G A Q+ +VI+ G ++L R + + LT+ EF +L L E Sbjct: 129 LEHTGRGEGVAATIQDSSVISAGALTIDLRNRVVRLGARSVELTTAEFELLLLLARSLGE 188 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + RD ++ RG +Y ++RSID +ISRLR+ +++ A I+T+ G GY D Sbjct: 189 VVDRDFIIQELRGFDYDGLDRSIDRRISRLRKKLQDGGAGQDIIKTIRGKGYQLCTD 245 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL++DDD L A L Y G+ + S + L F +LD+MLP DG + Sbjct: 20 RILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDGFA 79 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +R +S+ +PI+M+TA+GE +DR+VGLE+GADDY+PKPF PREL+AR++ +LRRQ + Sbjct: 80 LCREIRKESD-IPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 138 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 A F ++L R++ R E + LT EF +L L + P + SRD + Sbjct: 139 TPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSRDDI 198 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +N RG E R++D+ +SRLR+ +E I+T+ GY Sbjct: 199 LNRLRGHEAELYTRAVDIVVSRLRKKLEPLDC----IKTLRNAGYAL 241 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 139/234 (59%), Gaps = 9/234 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+LV DDD +R ++ Y +Q ++ + + + ++ +E +++LD+M+P DG Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 CR +R + + PIIM+TAK EE DR++GLE+GADDY+ KPF+PRE++ARIRA++RR Sbjct: 94 ACREIRKKWDT-PIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ- 151 Query: 126 ELPGAPSQEEAVI---AFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 P ++EA + F + ++L RE+ E + EF +L LV P SR Sbjct: 152 --PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSR 209 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 ++L+ G +Y R+IDV I ++R+ +++ P IQTVWG+GY F D Sbjct: 210 EQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVDS 261 >UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudomallei group RepID=A3NL94_BURP6 Length = 245 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 135/228 (59%), Gaps = 4/228 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +LVV+DD LR +L YL+ G V V A + R + +++LDL LP DG+ + Sbjct: 10 VLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDGDGIDV 69 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR-QAN 125 R R ++ P+I VT + EE DRI+GLE GADDY+ KP++ RE+LAR+RA+ RR + + Sbjct: 70 LLRWR-ETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRRAEPS 128 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 P + F + LN+ TR + R+ + +PLT GEF +L + P ++R + Sbjct: 129 TTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSPSRVVTRAQ 188 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ R + +R++DVQI RLR+ +E+DP HP I+T G+GY F Sbjct: 189 LLECTRAFD-DVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYF 235 >UniRef50_C6CHY9 Two component transcriptional regulator, winged helix family n=37 Tax=Gammaproteobacteria RepID=C6CHY9_DICZE Length = 232 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 136/229 (59%), Gaps = 3/229 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 E+ KIL+VDDD L +L YLT +GF V ++ + + M+LD+MLP Sbjct: 4 NESMKILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDM 63 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G+ + R++R ++ +PIIM+TAKG+ +DR++GLE+GADDY+PKP PREL+AR+RAVLR Sbjct: 64 SGIDVLRQVR-RNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLR 122 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R ++ S++ I +G+ ++ TR + LT+ EF +L+ L+ ++ Sbjct: 123 RYEDK--AEKSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVT 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +D+L GR A +RS+DV IS +R+ + I+TV +GY Sbjct: 181 KDELSEKCLGRRREAYDRSVDVHISNIRQKLAALDGCSLTIETVRSVGY 229 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 138/232 (59%), Gaps = 3/232 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E K+L+VDD+ ++ +++ YL ++G V + Q + R + L+VLDLMLP Sbjct: 1 MLEEKKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G IC +R +S +PIIM+TAK +E I GL +GADDYI KPF+PREL+ARI A+ Sbjct: 61 MTGEEICSIVRKRSR-VPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIF 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR E+ P E +++ +E+ + E + LTS ++ +L L+ +P + Sbjct: 120 RRLNEEV--VPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTF 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R++L++ A G +Y +R++D + +R+ +E +P P+YI TV G GY F Sbjct: 178 TREELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRF 229 >UniRef50_A9VUJ1 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus weihenstephanensis KBAB4 RepID=A9VUJ1_BACWK Length = 225 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 137/226 (60%), Gaps = 5/226 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVV++ + +R + + GF + E LL + + ++++D+MLPG DG + Sbjct: 4 ILVVEEGITIRNFIVLIMNRAGFNALAADTGETALELLGKHNVDIILIDVMLPGIDGFQV 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C+ +R + + IIM++A+ ++ D++ GL IGADDYI KPF+ EL AR++A+LRR Sbjct: 64 CKSIRENNKNIGIIMLSARVQDRDKVQGLTIGADDYIEKPFSSIELTARVQALLRR---- 119 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + G E+ I F+LNL +++E + LT E+ +L+ L+ + +P+SRD+L+ Sbjct: 120 VKGNKENMES-IHSEPFRLNLQQERLYKEGVVIDLTPTEYIILRCLMENQGKPISRDELL 178 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 N G Y + I V I RLR+ +E +P+ P++++TVWG GYV+ Sbjct: 179 NEIWGVNYVVKTKVIGVNIRRLRQKIEPNPSGPQFLRTVWGKGYVW 224 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVV+D+ + LE LT +G+ V + R +F L++LD+MLPG+DGL Sbjct: 3 RILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGLE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR PI+M+TAK E ++++GLEIGADDY+ KPF +EL ARI+A+LRR + Sbjct: 63 VCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRASG 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + +FG +++ E+ + + + LT EF +L + LSRD+L Sbjct: 123 D------TDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQL 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + GR+ R +D I+ LRR + +DPA PRY++ V GLGY F Sbjct: 177 IAATWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRF 223 >UniRef50_A3QF24 Two component transcriptional regulator, winged helix family n=4 Tax=Gammaproteobacteria RepID=A3QF24_SHELP Length = 246 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 138/246 (56%), Gaps = 11/246 (4%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++N IL+VDDD L L+ +L G++ N + + E L++LD+MLP Sbjct: 1 MKDNNWILIVDDDADLANLVADFLEMNGYKTEIEHNGAKAVERIIAEQPMLVILDVMLPD 60 Query: 61 EDGLSICRRLRSQ------SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLA 114 DGLSICR +R S PI+M+TA ++D + GLE GADDY+ KP R LLA Sbjct: 61 MDGLSICRAVRHGHPGIEGSYNGPILMLTALNNDIDEVAGLETGADDYLAKPVRSRVLLA 120 Query: 115 RIRAVLRRQ-----ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVL 169 R+RA+LRR+ +L S E++I F ++ + + + + + LT+ EF +L Sbjct: 121 RVRALLRRKPEPPVTEKLSKLHSNNESLIEFDGLSIDKKYQRIQQHGQDIELTTAEFELL 180 Query: 170 KALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLG 229 L S P E RD + + Y + R+ID+++SR+RR + +DP+H I+T+ G G Sbjct: 181 WLLASRPGEICDRDSISDYFSDLGYESSHRTIDLRVSRIRRKLGDDPSHATRIKTIHGKG 240 Query: 230 YVFVPD 235 Y+FV D Sbjct: 241 YLFVGD 246 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 136/233 (58%), Gaps = 12/233 (5%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+ DDD +R LL YL +G++VR + + + L++LD+M+P DG + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ--- 123 RR+R +++ +P+IMV+AKG++ D+I+GL++GADDY+ KPFNP E LAR+R+ LRR Sbjct: 71 LRRVR-ETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGM 129 Query: 124 -ANELPGAPSQEEA-----VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 A P PS + V++ L+L + R DEP+ LT EF +L +SHP Sbjct: 130 PAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPG 189 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 ++ ++ G EY A ++ V IS+LR + +DP YI TV GLGY Sbjct: 190 RVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGY 240 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 136/228 (59%), Gaps = 4/228 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Y +L+V+D+ + +E YL QG+ V +N + ++ ++ HL ++D+M+P DG+ Sbjct: 4 YNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGI 63 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++ +LR + P+IM+TAK EE+D+I+GL IGADDY+ KPFNP EL+AR+ + LRR + Sbjct: 64 TMVMKLRENYD-FPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYS 122 Query: 125 NELP--GAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 L Q+ + + G +LN T+E+ + E + +T EF +L+ L+ +P S Sbjct: 123 KYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSA 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +++ E + ++ V + +R +E D +P+Y++ VWG+GY Sbjct: 183 EEIYEKVWNEE-AINTDTVMVHVRNIREKIEIDTKNPKYLKVVWGVGY 229 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 130/228 (57%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+VDD+ + ++ +GF V + E L E++ L++LD+ LPG DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R++R++ P+IM+TA+ +EVDR+VGLE+GADDY+ KPF+PREL+AR+RA+LRR A Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +A +L+ R D + L EF +L L SHP + +R+ L Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + G + R++DV I RLR + E A IQT WG+GY F+ Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFI 230 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 138/233 (59%), Gaps = 1/233 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E KIL+V+DD+ + +++ L ++G+ + + + E++H++++D+M+P D Sbjct: 2 ERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ RR+R +S +PII+++AKGE+ D+I+GL +GADDYI KPF+ EL+AR++ +RR Sbjct: 62 GIESMRRIREKS-KVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 +E + +G K ++ + + + + LT+ E +LK +P ++ Sbjct: 121 AIYYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTK 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ + G E+ + ++ V + RLR +E+DP +P+ I+TVWG+GY D Sbjct: 181 VQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 137/231 (59%), Gaps = 8/231 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N KIL+VDD+ + L+ L +G+ + E+ + RE L+VLDLMLPG DG Sbjct: 3 NEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDG 62 Query: 64 LSICRRLRSQSNP--MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 + RR+R + +PI+M+TAKGEE D + GLEIGA+DYI KPF+PREL+ARIR +LR Sbjct: 63 FEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILR 122 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R+ P+ + VIA G +++G + + + LT EF VL LV+ + Sbjct: 123 RRTR--VEKPATQATVIA-GPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFT 179 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R ++++ G Y+ ERS+DV I+ LR+ + P +I+TV G+GY F Sbjct: 180 RGQIVDAVHGENYAVTERSVDVTIAGLRKKL--GPC-ADFIETVRGVGYRF 227 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 139/230 (60%), Gaps = 7/230 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+LVVDDD ++ +L YL ++G+ V + + + + +++LD+MLP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--Q 123 +C+ +R S+ +PIIM+TA+ +E DRI+GLE+GADDY+ KPF+P+E+LAR+RA+ RR Sbjct: 62 VCKEIRRTSD-VPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQP 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 A+ G E ++ G L+ +R + P+ LT E+ +L+ ++HP + SR Sbjct: 121 ASRRDGG----ERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRL 176 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +L+ + + ER++D I LR+ + P P YI+T++G+GY V Sbjct: 177 QLIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLV 226 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 142/233 (60%), Gaps = 7/233 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+VDD+ +RA+L L +G+ VR+ + + R L++LD+++PG DGL+ Sbjct: 15 EVLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLT 74 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--- 122 CRRLR+ +P++M+TA+ DR+ GL+ GADDY+ KPF ELLAR+RA+LRR Sbjct: 75 ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134 Query: 123 ---QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 A PGA S+++ V+ + +++ TRE+ R + LT E+ +L+ +SHPR+ Sbjct: 135 TGEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQA 194 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+R++++ G ++ S+DV + +R+ E D PR +QTV G+GY Sbjct: 195 LTREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFDDL-PRLVQTVRGVGYAL 246 >UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVH5_9GAMM Length = 247 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 141/232 (60%), Gaps = 9/232 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Y+ILVV+D+ ++ LL L +QGF V VA+ EQ + L HL+VLD MLPGE G+ Sbjct: 11 YRILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGV 70 Query: 65 SICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 + CR LR ++ +PII++TA+GEE DR+ GLE GADDY+ KPF+PREL AR++A+LRR Sbjct: 71 AWCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRR 130 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 L P+ + G+ +++ + +DE + + EF +L+ ++P SR Sbjct: 131 SYGGL--TPTH----VRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSR 184 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + L++ GR+ ER++DV I RLRR + + + I+TV G GY P Sbjct: 185 EALLDHIWGRQSFIEERTVDVHIRRLRRALAK-VGYANIIETVRGEGYRCNP 235 >UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW86_9RHOB Length = 242 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 139/233 (59%), Gaps = 6/233 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I +V+DD RA + YL ++V S ++ + + ++DL LP DGL + Sbjct: 8 IALVEDDGLARAEICEYLRYNNYEVLSAGTQSDFEKKIANADVDIFLIDLGLPDGDGLDV 67 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R L+ ++N II+++ + +++D++V LE+GADDYI KPFNPRE+LAR+ ++LRR N+ Sbjct: 68 IRGLKGRAN-CGIIVLSGRSDDIDKVVCLEVGADDYITKPFNPREMLARVHSLLRRLENK 126 Query: 127 LPGAP----SQEEAVIAFGKFKLNLGTREMFREDE-PMPLTSGEFAVLKALVSHPREPLS 181 A S +++I+F + L+ TR++F D PLT EF +L + +P LS Sbjct: 127 NETADLSTESTTDSIISFLDWSLDTNTRQLFDADNIETPLTRSEFDLLVFFLKNPNRALS 186 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R+ L+ RG ++ +R++D +SRLR + + + YI+T+ G+GY+F+P Sbjct: 187 RETLIANLRGSNWAGYDRAMDGLVSRLRGKLSKGNSSINYIKTMHGVGYLFIP 239 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 143/231 (61%), Gaps = 11/231 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 + +VV+D++ L A++ YL G++V + + L +++LDL LPG DG+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--- 122 +CRRLR+ S+ ++M+TA+ +EVD ++GL +GADDY+ KPF+PRELLAR++A+LRR Sbjct: 125 VCRRLRTFSDCY-VVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRP 183 Query: 123 ---QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 Q ++ A + ++ FG +++ RE++ DE +PLT EF +L L PR Sbjct: 184 KTGQRADVATAGT----ILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLV 239 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 SR +L++ G ++ E +DV I LRR +++D + +Y++TV G+GY Sbjct: 240 FSRRQLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGY 290 >UniRef50_Q11E93 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=Q11E93_MESSB Length = 268 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 142/231 (61%), Gaps = 6/231 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+VDDD +R L+ L E GF+V A+ +M L+++S L++LD+ LPGEDGLS Sbjct: 33 RLLIVDDDDDIRTLVAEQLAEAGFRVELAADGVEMFDHLSKKSIDLIILDVNLPGEDGLS 92 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRR +SN +P+IM+TA+G +DR++GLE+GADDY+ KPF PRELLARIR VLRR Sbjct: 93 LCRRHGQKSN-IPVIMLTARGALIDRVIGLEVGADDYLAKPFEPRELLARIRCVLRRAGA 151 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + ++ F + L+ R + R + L+ EF++LK V + E L+R++ Sbjct: 152 AVEPVDARRAKRARFRGWTLDFENRCLVDRAGRVVVLSGNEFSLLKYFVENANEVLTREQ 211 Query: 185 LMNL---ARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ L A +Y+A +R D+QI RLR+ + D I TV GYV Sbjct: 212 LLTLSTPATANDYNA-QRLADLQICRLRQKLHPDTDEAPLIATVRNRGYVL 261 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 136/225 (60%), Gaps = 8/225 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDDD L +L L +G++ V++ + + +++LDLMLPG +GL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC+ +R+QS +PI+M+TAKG+ +D + GLE GADDY+ KPF P EL+AR+RA LRR Sbjct: 77 ICQDIRTQST-VPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR--- 132 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 G Q E ++ G ++++ ++ R+ P+ LT EF +L AL PR+ +R+ L Sbjct: 133 ---GETGQAEN-LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELL 188 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + G ++A R ++V + RLR +E DP P + TV G+GY Sbjct: 189 LEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGY 233 >UniRef50_A7HP70 Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HP70_PARL1 Length = 257 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 12/236 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +L+VDDD +R + YL+ G + A+A + + F L++LDL+L ++G Sbjct: 20 SLLLVDDDPDIREEMRTYLSANGMIITEAADAASALEMFSGGKFDLVILDLLLGADNGFD 79 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R +R Q++ P IMVT + E D++VGLE+GADDY+ KP N RELLARIRA+LRR AN Sbjct: 80 VLREIR-QTHSTPCIMVTGQSEATDKVVGLELGADDYVVKPVNLRELLARIRALLRRTAN 138 Query: 126 E-------LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPM-PLTSGEFAVLKALVSHPR 177 GA +EA ++K + R + D + PLT+ E +L LV+H Sbjct: 139 SGGSGARTNAGAADSDEAA---AQWKFDPHRRRLCAPDGALVPLTTAECDLLIELVAHEG 195 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 P +R++L R++ +RS+D + +LRR +E +P HP I+T+ G GY+F Sbjct: 196 NPQTREELCRRVFNRQWQPYDRSLDSIVVKLRRKLEPNPDHPMVIKTIRGKGYLFT 251 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 137/233 (58%), Gaps = 7/233 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ R+R L+ +L G+ + LL+ F L++LD+M+P DG++ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 R +R++ P+I++TA+GEE D++ GLE GADDY+ KPF+PREL+AR++AVL R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT-- 191 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +P + + + + FG+ ++ + + E + LT EF +L L S+ LSR+K+ Sbjct: 192 -MPRSEAS-DGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKI 249 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 + +Y +R++D + LR + + YI TVWG+GY F PD ++ Sbjct: 250 LQKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDAAR 299 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 137/234 (58%), Gaps = 2/234 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 EN IL+VDD+ + +++R LT++GF +V + ++AE+ ++ +++ HL++LD+M+PG+ Sbjct: 2 ENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQ 61 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G + +R +N PI +TAK ++D++ G GADDYI KPFNP EL+ARI+A L+ Sbjct: 62 TGFDVSPEIRRHTNA-PIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLK 120 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R A + + + +F + E+ + E + ++ +L+ HP LS Sbjct: 121 RTYIHKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +D++ G ++ V I +LR +E+DP+ P YI T+ GLGY FVP+ Sbjct: 181 KDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPN 234 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 131/227 (57%), Gaps = 3/227 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL++DD+ + LLE YL + + V A + L +LD+MLP +G S Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+ +R + PIIM+TAK EE D+I GL +GADDY+ KPF P E++AR++A LRR Sbjct: 81 LCQLIRKKYT-YPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139 Query: 126 ELPGAPSQE-EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 PG +++ + +++ K LN+ T E + E + LT EF++L L+S +S ++ Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEE 199 Query: 185 LMN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 L + + + YS +I V I LR + + P+YI+T+WG+GY Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 246 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILV +D+ +R+ + L GF V N + RE F +++LD+M+P DG Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 C +R + IIM+TA+ E D+I GL GADDYI KPF+P EL+ARI+A+LRR Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRR--- 119 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + ++ + G F ++L +++ + + + LT E+ ++ LV + LSRD L Sbjct: 120 -VEKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDAL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 ++ G Y +++DV I RLR+ +E+DP+HP YI+T+WG GY Sbjct: 179 LDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGY 223 >UniRef50_Q892Y1 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium tetani RepID=Q892Y1_CLOTE Length = 175 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 118/174 (67%), Gaps = 4/174 (2%) Query: 57 MLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARI 116 MLPG DG +C+ LR + M IIM+TA+ +++D+I+GLE GADDY+ KPFNP EL+ RI Sbjct: 1 MLPGIDGFQVCKELRQEFPSMGIIMLTARTQDMDKIMGLEFGADDYVVKPFNPSELILRI 60 Query: 117 RAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 +A+LRR + S +E ++ FK+N ++++++ ++ + +T E+ +LK + + Sbjct: 61 KALLRR----INSTDSTKENILVSSIFKINTYSQKIYKNEKEIDVTPKEYMILKIFLENE 116 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + SRD+L++L G ++ + +DV I RLR +E++P++P+YI+TVWG GY Sbjct: 117 EKAFSRDELLDLVWGYDFVGDPKIVDVNIRRLRAKIEDEPSNPKYIETVWGKGY 170 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 134/231 (58%), Gaps = 7/231 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+VDD+ R+R LL+ YL + F++ +N ++ L ++ ++LDLMLP DG+ Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR-QA 124 + +LR PIIM+TAKGEE +R+ G E GADDYI KPF+PRE++ R++A+LRR Q+ Sbjct: 64 VATKLREHKQT-PIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + + VI F +++ + +++ + LT E+ +L L P + R++ Sbjct: 123 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 185 LMNLARGREYSAMERSIDVQISRLRRM---VEEDPAHPRYIQTVWGLGYVF 232 L+ E+ R++D + RLR V + AH IQTVWG+GY F Sbjct: 183 LLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAH--MIQTVWGVGYKF 231 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 135/230 (58%), Gaps = 2/230 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 +N +L+V+D+ + +++ YL+ F V + L + ++LDL LP D Sbjct: 2 KNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ ICR++R SN + I++++A+G + D+++GL GADDY+ KPF+ EL+ARI A LRR Sbjct: 62 GIEICRKIREHSN-VAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Q L Q++ V+ +N R+++P+PL++ EF +L L + + S+ Sbjct: 121 QDRWLQDHDVQKD-VLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++ G + E +I V I R+R +E +P+HP Y+QTVWG+GY F Sbjct: 180 SQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 134/227 (59%), Gaps = 6/227 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+ DDD +L ++L Y ++ F V + + + L + +MVLD+M+PG DG + Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CRR R Q +PII ++AK +E DR+VGL +GADDY+ KPF+ REL+AR+++ LRR+ E Sbjct: 66 CRRAR-QFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRGE 124 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + + E F ++ E+ R+ + LT EF++L L S P SR +L+ Sbjct: 125 VLSQVASYEIRDLF----IDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLL 180 Query: 187 NLAR-GREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 A G Y ER+ID I LR+ +E DP+ P YI TV+G+GY F Sbjct: 181 EKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKF 227 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 134/230 (58%), Gaps = 7/230 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N ++L+V+D+ + +L+ YL +G++V + +++ + ++ +++LD+MLP DG Sbjct: 3 NEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRLDG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 ++CR +R S+ +PIIM+TAK EEVDRI+G E+G DDYI KPF+PRE++AR+ AVLRR Sbjct: 63 KTVCREVRKFSD-VPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + V+A G +LN +R + LT EF + L+ P +R Sbjct: 122 FKK------SSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRA 175 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +L+ +G Y ER+ID I LR+ + + IQ+ +G GY V Sbjct: 176 QLIEKVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKIV 225 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 138/240 (57%), Gaps = 15/240 (6%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M KIL+VDDD + L+ YL ++ F + V + E+ +L++LDLMLPG Sbjct: 1 MATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR +R S +PIIM++AKGE D+++GLE+GADDY+ KPF+ +EL+AR++AVL Sbjct: 61 IDGYEVCREVRKTST-IPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVL 119 Query: 121 RRQANELPGAPSQEEAV-------IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALV 173 RR +P + E+ + +++ +N + + + + E + L Sbjct: 120 RRV---VPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLA 176 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRY-IQTVWGLGYVF 232 SHP + +R++L++ G EY R++DV I RLR +++ H + + TVWG+GY F Sbjct: 177 SHPNQVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKD---HISWRLSTVWGIGYKF 233 >UniRef50_D0WFD8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFD8_9ACTN Length = 242 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 128/227 (56%), Gaps = 3/227 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I++VDD+ +R L+E +T++ + R AN + + L++LD+M+P DG S Sbjct: 4 IMLVDDEASIRKLVEDLVTDEDLEFRYEANGADALKSVAAIPPDLIILDVMMPKMDGFST 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA-- 124 CR++R MPI+ ++AK + VD+ G G DDY+ KPF+ REL+ + A LRR A Sbjct: 64 CRKIREMGATMPIVFLSAKSDIVDKCAGFAAGGDDYMTKPFDARELMLHVDAHLRRAAMI 123 Query: 125 -NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + + +VI G+ L+ ++ + LT EF++++ L+ HP S++ Sbjct: 124 KSAVESEGKSKNSVITVGRLSLDNEQHRFTKDGSHIKLTRKEFSIIRTLMEHPGVVFSKN 183 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +L G+E+ +I V + +LR VE+DP PR I+TVWG+GY Sbjct: 184 QLTEAGWGKEFVGETTTITVFMKKLRSKVEDDPTDPRIIETVWGVGY 230 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 155 bits (393), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 129/227 (56%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+L+++DD + L++ L++ G + ++ +++LD+MLP DGL Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+RLR +PI+M+T++ EE D++ L GADDYI KPF+ REL AR+ A +RR Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E + + F L+ ++ + + +T+ EF +L + +P SR +L Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++L G YS E +++ I+RLR +EE+PA P+YI TVWG+GY F Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_A5W315 Two component transcriptional regulator, winged helix family n=27 Tax=Proteobacteria RepID=A5W315_PSEP1 Length = 253 Score = 155 bits (393), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 137/229 (59%), Gaps = 3/229 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+VDDD L +L YL +GFQ +V E+ + +F ++VLD+MLPG G+ + Sbjct: 24 VLLVDDDRELTEMLSLYLAREGFQAMAVDTGEEGETQALSGNFQVVVLDVMLPGISGIEV 83 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 RR+R++S +P++++TA+G+ +DRI GLE+GADDY+PKP +P EL+AR+RA+LRR Sbjct: 84 LRRVRARSQ-VPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVKPH 142 Query: 127 LPGAPSQEEA--VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 L G S E + G K+ G RE + LT EF++L+ L + +S+ Sbjct: 143 LMGDTSAPEVPEQVRSGALKMWPGRREARWGTATLELTGSEFSLLEVLARQAGQLVSKQD 202 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L A GR + +R IDV +S +R+ + +IQ+V G+GY+ + Sbjct: 203 LSLNALGRPLTRYDRRIDVHVSSIRQKLGPRADGSSWIQSVRGMGYMLI 251 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 155 bits (393), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 138/229 (60%), Gaps = 9/229 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANA-EQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ILV+DDD LR + L ++GF+ + + ++ +T + L+++DL LPG G Sbjct: 15 ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKP-DLVLVDLRLPGMSGTE 73 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC++LR+ PII+++A +E+D+++ LEIGADDY+ KPF REL ARIRAVLRR Sbjct: 74 ICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRR--- 130 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 A + V+ F + +++ R + R+ E + LT E+ +L + +P PL+RD + Sbjct: 131 ----ASTDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMI 186 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +N G E+ R++D + +LR+ +E DP P++ TV G+GY F+P Sbjct: 187 LNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFIP 235 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 155 bits (393), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 133/225 (59%), Gaps = 1/225 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+ DD+ + LL YL + G + S N + +++ + ++D+M+P DG Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R++R ++ MP+IM++AK E D+I+GL++GADDYI KPFN E+LAR++A LRR Sbjct: 63 LVRKIR-ENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNK 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + E+ + GK +LN+ T +++E+ + LTS E+ +L L+ + + ++ ++ Sbjct: 122 SMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQI 181 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + + +I V IS LR +E+D +P YI+T+ GLGY Sbjct: 182 FEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGY 226 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 134/232 (57%), Gaps = 8/232 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Y ILVV+D+ + +E YL QG+ V N + +++ + HL ++D+M+P DG+ Sbjct: 4 YNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGI 63 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++ RLR N P+IM++AK EEVD+I+GL IGADDY+ KPF P ELLAR+ + LRR Sbjct: 64 TLTMRLRENYN-FPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYT 122 Query: 125 NELPGAPSQEE------AVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 L ++E+ +V A G +LN T+E+ + + + T EF +L L+ + Sbjct: 123 KYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGR 182 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 S D++ E + ++ V + +R +E DP +P+Y++ VWG+GY Sbjct: 183 VFSADEIYERV-WNENAINTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGY 233 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 381 e-104 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 346 3e-94 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 344 2e-93 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 342 7e-93 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 339 6e-92 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 337 1e-91 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 336 3e-91 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 335 6e-91 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 335 8e-91 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 335 1e-90 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 334 1e-90 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 334 2e-90 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 333 3e-90 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 332 8e-90 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 331 1e-89 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 331 1e-89 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 330 2e-89 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 330 3e-89 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 329 4e-89 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 329 4e-89 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 329 5e-89 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 329 5e-89 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_B8G223 Two component transcriptional regulator, winged ... 329 7e-89 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 326 4e-88 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 325 8e-88 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 325 8e-88 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 325 1e-87 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 324 1e-87 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_B8I014 Two component transcriptional regulator, winged ... 323 4e-87 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 323 4e-87 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 323 4e-87 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 322 4e-87 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 322 4e-87 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 322 7e-87 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 322 7e-87 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 321 1e-86 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 321 1e-86 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 320 2e-86 UniRef50_C4L340 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 319 4e-86 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 319 4e-86 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 319 5e-86 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 319 7e-86 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 318 9e-86 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 317 1e-85 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 317 1e-85 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B8I272 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 316 3e-85 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 316 5e-85 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 315 5e-85 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_D1C683 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 315 8e-85 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 315 9e-85 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 314 1e-84 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 314 2e-84 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 313 3e-84 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 313 3e-84 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 313 3e-84 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 313 3e-84 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 313 3e-84 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 313 4e-84 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 312 5e-84 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 312 6e-84 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 312 8e-84 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 311 1e-83 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 311 1e-83 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 311 2e-83 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 311 2e-83 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 310 2e-83 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 310 2e-83 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 310 2e-83 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 310 2e-83 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 310 3e-83 UniRef50_Q3A190 Two component signal transduction response regul... 310 3e-83 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 310 3e-83 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 309 4e-83 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 309 5e-83 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 309 7e-83 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 308 1e-82 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 307 2e-82 UniRef50_A4AL32 Putative two-component system response regulator... 307 2e-82 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A4J267 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 307 3e-82 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 307 3e-82 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 307 3e-82 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 306 4e-82 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 306 4e-82 UniRef50_D1C280 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 306 5e-82 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 305 5e-82 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 305 6e-82 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 305 6e-82 UniRef50_Q398T9 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 304 1e-81 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 304 2e-81 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 303 3e-81 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 303 4e-81 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 303 4e-81 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 303 4e-81 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 302 5e-81 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 302 5e-81 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 302 5e-81 UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional r... 302 5e-81 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 302 5e-81 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 302 7e-81 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 302 8e-81 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_C4L703 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 301 1e-80 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 301 1e-80 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 301 2e-80 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 301 2e-80 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 300 2e-80 UniRef50_B8G869 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 300 3e-80 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 300 3e-80 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 300 3e-80 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 300 4e-80 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 299 4e-80 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 299 4e-80 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 299 6e-80 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 299 6e-80 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 299 8e-80 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 298 9e-80 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_C0WE14 Two-component system transcriptional regulator n... 297 2e-79 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 297 2e-79 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 296 3e-79 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 296 3e-79 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 296 4e-79 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 296 4e-79 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 296 4e-79 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 296 5e-79 UniRef50_A4J7U5 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 295 6e-79 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 295 6e-79 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 295 6e-79 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 295 6e-79 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 295 7e-79 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_D1U371 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 295 8e-79 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 295 1e-78 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 294 1e-78 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax... 294 1e-78 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 294 2e-78 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 294 2e-78 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 294 2e-78 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 294 2e-78 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 294 2e-78 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 294 3e-78 UniRef50_C7I0W4 Two component transcriptional regulator, winged ... 294 3e-78 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 293 3e-78 Sequences not found previously or not previously below threshold: UniRef50_B8G179 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 307 1e-82 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 303 4e-81 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 301 1e-80 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 301 1e-80 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 300 2e-80 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 299 7e-80 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 299 7e-80 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 298 1e-79 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 297 2e-79 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 297 2e-79 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 296 4e-79 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 295 8e-79 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG Sbjct: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL Sbjct: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL Sbjct: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA Sbjct: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 346 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 153/235 (65%), Gaps = 2/235 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+E ++L+ DD+ +R LL++YL + + V + + E+ +L T +++L++LDLM+P Sbjct: 1 MKE-IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPK 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+ +CRRLR+ +N +PI+M+TAK +EVD+IVGL IGADDYI KPF+ E++ARI+A++ Sbjct: 60 IDGIEVCRRLRNNTN-IPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALM 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A +QE+ ++ F +++ + D+ + LT E +LK S+P + Sbjct: 119 RRFLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ +L Y + ++ V I +LR+ +E DP++P++IQTVWG+GY FV + Sbjct: 179 TKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 142/229 (62%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +IL+++D + AL+ L + V ++ + L T ++F L++LD+MLP DG Sbjct: 2 QKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L +C+ LR+++ PI+M+TAK E DR+VGLE GADDY+ KPF+ REL AR++A LRR Sbjct: 62 LQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + Q + + FG+ ++ R + D+ + LT+ EF +L + SHP + SR+ Sbjct: 122 DMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSRE 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 KL++ G ++S E +++ I+RLR +E D ++P+Y+ TVWG+GY F Sbjct: 182 KLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 342 bits (878), Expect = 7e-93, Method: Composition-based stats. Identities = 161/233 (69%), Positives = 196/233 (84%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVVDDD+RLR LL+R+L ++GF V++ +A QMDRLL RE F L+VLD MLP EDGLS Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 ICRRLR + PIIM+TA+G + DRI GLE GADDY+PKPFNP ELLARIRAVLRRQ Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E+PGAPSQ+ V++FG + L+L TR + RE + + LT+GEFAVLKALV HPREPL+RDKL Sbjct: 142 EVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 MNLARGRE+ AMERSIDVQ+SRLRR++E++PA RYIQTVWG+GYVFVPDG++ Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDGAE 254 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 135/232 (58%), Gaps = 4/232 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E +KILVV+DD LR LL L ++G+ + + + L++LD+MLPG Sbjct: 27 MPE-HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPG 85 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR +R++S+ +PI+M+TA+ E D++ GLE GADDY+ KPF RELLAR++A+L Sbjct: 86 IDGFELCRLIRTESS-VPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALL 144 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + ++ + G ++ + + R + + EF + +V + Sbjct: 145 RRSQTQ--NSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVF 202 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SR++L+ G +Y R++DV IS LR+ +E DP+ PR++ TV G GY F Sbjct: 203 SREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 136/234 (58%), Gaps = 1/234 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+D+ +R + +RYL + ++V + N + + L++LDLM+P +DG Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C +R QSN +PIIM+TAKGEE DRI+GL +GADDY+ KPF+PREL+ R++ +LRR Sbjct: 62 ELCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A VI F K+ TR + + + LT EF VL + HP++ SR + Sbjct: 121 QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 L+ L + ++ V +SRLR +E+ +I TVWG+GY F P+G Sbjct: 181 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRN 234 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 146/233 (62%), Gaps = 5/233 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ ++ +++ YL ++G++V + N + +E L+VLD M+P G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R +R +S +PIIM+TAK EEVD+++G E G DDY+ KPF+ REL ARI+ +L+R Sbjct: 64 VLREIRKKSQ-IPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR--- 119 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 L EE V+ G L RE+F + +P+ LT EF +L+A + +P + SR +L Sbjct: 120 -LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 + A G Y ER+ID IS LR+ +E+DPA+P YIQTV+G+GY P G K Sbjct: 179 LEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGEK 231 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 335 bits (862), Expect = 6e-91, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 5/236 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDD+ + LL L + G++V + + L +SF ++LDLMLP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + ++LR + PII+VTAK +E D++ GLE+GADDYI KPF+PRE+LARI+AV+RR Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 126 E-----LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 + P AV+ G +++ + R + + LT EF +L V L Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 SRD ++N G +Y++ R +D+ IS LR +E DP PR I+TV G GY FV DG Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 335 bits (861), Expect = 8e-91, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 136/231 (58%), Gaps = 2/231 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +N I+VVDD+ +R L+ YL +G++V N + LL +E L++LD+M+P Sbjct: 1 MNKN-TIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPN 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+ C ++R + N MPIIM++AK E++D+I GL GADDY+ KPFNP EL+AR+++ L Sbjct: 60 MDGIEACTKIREEKN-MPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + +I + +N T E+ ++ + LT EF +L+ L + Sbjct: 119 RRYKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 S +K+ E+ + ++ V I +LR +EE+P P+Y++TVWG+GY Sbjct: 179 SIEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 144/237 (60%), Gaps = 3/237 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KILVVDDD + L+ L +G+ V +AE+ +++ ES + ++D+MLPG DG Sbjct: 27 KKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDG 86 Query: 64 LSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 + R+LR + P++ ++AKGEE D+++GLE+GADDYI KPF+ RE++ARI+AV R Sbjct: 87 FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + + ++A G ++++ E+ D+ + LT EF +L+ L + + S Sbjct: 147 RIQLSAQEREERPKKIVAKG-LEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFS 205 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 RD L++ G +Y R++DV I RLR +EEDP++P+YI TV G GY F G + Sbjct: 206 RDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKE 262 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 146/232 (62%), Gaps = 6/232 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVVDD+ +R LL L + G++V A+ + L++LD+MLP DGL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLE 59 Query: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +CR+L++ Q++ +PIIM+TAK EE+DR++GLE+GADDY+ KPF+ RELLAR++AVLRR Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 124 ANELPGAPS--QEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 A+ G+ + E + G +L+ + + + D+ + LT E+ +LK LV++P S Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFS 179 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 RD+L+ G EY R++DV I LR +++DP I+TV G+GY F Sbjct: 180 RDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 140/231 (60%), Gaps = 5/231 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 E +IL+V+D+ +R + YL + + V +V + + ++ F L++LDLMLP Sbjct: 6 SETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRV 65 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G +CR +R S+ +PIIM+TAKGE DRI+GLE+GADDY+ KPF+PREL+AR+RA+LR Sbjct: 66 PGERVCRAIRDNSD-VPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + + V+ FG+ +++ ++ + + LT+ EF +L L +P S Sbjct: 125 RVHADSE----PQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R +L+ G ++ ER+ID + LR + ++P +P+++ TV G+GY F Sbjct: 181 RMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 2/229 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + ILVVDD+ + L+E YL +GF + N + R + E L +LD+MLP DG Sbjct: 2 SMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 ++C+R+R N P+IM+TAK EE+D+I GL +GADDYI KPF P EL+AR++A LRR Sbjct: 62 FTLCQRIRENHN-FPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRF 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P+QEE +IAF L++ T E ++ + LT EF++L L S+ +S + Sbjct: 121 TKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSE 180 Query: 184 KLMNLARGREYSAME-RSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +L + G +Y ++ V I LR + HP+YI+TVWG+GY Sbjct: 181 ELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYK 229 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 138/233 (59%), Gaps = 5/233 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +IL VDDD ++ +L+ L ++GF+V + ++ E+ + + S L++LDLM+PG DG Sbjct: 2 PQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 ++L++Q +PII+++A+ EEVDR+VG +G DDY KPF+P EL R++AVLRR Sbjct: 62 FETYQKLKAQ-REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR- 119 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 L E ++ +G L+ R + + + LT +F +L + S+P ++ Sbjct: 120 ---LGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKA 176 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L++ + + ++ V I RLR VE DP++P YI+TVWG+GY F +G Sbjct: 177 HLLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYEG 229 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 134/234 (57%), Gaps = 7/234 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+VDD+ R+R L+ +L G+ + LL+ F L++LD+M+P DG+ Sbjct: 73 AKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGM 132 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + R +R++ P+I++TA+GEE D++ GLE GADDY+ KPF+PREL+AR++AVL R Sbjct: 133 TCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTM 192 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + + + FG+ ++ + + E + LT EF +L L S+ LSR+K Sbjct: 193 PRSEAS----DGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREK 248 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 ++ +Y +R++D + LR + + YI TVWG+GY F PD ++ Sbjct: 249 ILQKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDAAR 299 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 144/230 (62%), Gaps = 1/230 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ++L+VDD+ + LL+ +L ++GF V + L RE + +VLD+MLP DG Sbjct: 9 TKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDG 68 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +C+RLRS+ + PI+MV+AK +E D+++ LE+GADDY+ KPF+PRELLAR++A+LRR Sbjct: 69 IEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 128 Query: 124 ANELPGA-PSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 E+ G E + +L E++++ E +PLT E+ +L L+ HP L+R Sbjct: 129 EAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTR 188 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++L+ G ++ R +DV I +LR +E++P P+YIQT+ G GY F Sbjct: 189 ERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 96/231 (41%), Positives = 146/231 (63%), Gaps = 8/231 (3%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++++KILVVDD+ ++R LL L ++ +Q + +N ++ L+ R++FHL++LD+M+P Sbjct: 3 EQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEM 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL+ C R+R SN +PIIM+TA+ +E+DRI GL+IGADDYI KPF+PRELLARI A LR Sbjct: 63 DGLTACMRIREFSN-VPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + A + GK +L+ +R + +P+ LT EF +L V + + S Sbjct: 122 RSHRFT----VDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFS 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R++L++ G +Y R++D I LR + E IQTVWG+GY F Sbjct: 178 REQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 147/234 (62%), Gaps = 6/234 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL-TRESFHLMVLDLMLPGEDG 63 ++L+V+DD +R ++E L+ +G + +V + E LL + F L++LD+MLPG DG Sbjct: 2 ARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDG 61 Query: 64 LSICRRLRSQSNP---MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +S+CR LR +P +P++M+TA+ +E +VGLE+GADDYI KPF+PR+L +R+RA L Sbjct: 62 ISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQL 121 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQ +P Q + + F +++L R + E + LT+ EF VL L S+P Sbjct: 122 RRQRMNAQASPEQRK--LEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVY 179 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR+++M+ G E+ RS DV I LR+ +E DP +PRYIQTV G+GY F Sbjct: 180 SREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 97/231 (41%), Positives = 141/231 (61%), Gaps = 4/231 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD+ L L L ++GFQV + ++ + F L+VLDLMLPG DGL Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +ICR +R+ PIIM+TAK +++D+I+GLE+GADDYI KPFN REL+ARIRAVLRR Sbjct: 62 TICREVRAAG-MTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + + G L+ R P+ LT+ E+ +L+ L HP +R + Sbjct: 121 ---AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQE 177 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 L++L G +++ ER++DV + R+R +EEDP+ PRY++T WG+GY + Sbjct: 178 LLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 145/234 (61%), Gaps = 5/234 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++ K+LVV+D+ +R + L G++V + E LLT L+VLDLMLPG Sbjct: 3 EKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGI 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL +C+ +R II++TAKG++ D+I+GLE+GADDY+ KPFNP EL+ARI+A+LR Sbjct: 63 DGLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLR 122 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R+ G +G L+ ++ + ++ + LT E+++LK + +P + L Sbjct: 123 RRDRYEAGRTG-----YTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALR 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 R++++N G +Y +++DV I RLR +E++P+ PRYI+T+WG GY + P+ Sbjct: 178 REEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 100/230 (43%), Positives = 144/230 (62%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+V+DD + LLE +LT+ G V V + + E++ L+VLD+MLPG DG Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ICRRLR + P PI+MVTAK EEVD+++GLE+GADDYI KPF+ RE+LAR++A+ RR Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + ++ I GK + R++ E E + LTS EF +L HP SRD+ Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L++ G +YS +++ I+RLR +E DP+ PRY++TVWG+GY F Sbjct: 187 LLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAE 236 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 13/240 (5%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR---------ESFHLM 52 +ILVV+D+ +R ++ L ++GF V A+ E+ L+ Sbjct: 21 SPASRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLV 80 Query: 53 VLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPREL 112 VLDLMLP +GL CR LR Q +PI+M++AK E DR+VGLEIGADDY+ KPF REL Sbjct: 81 VLDLMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTREL 140 Query: 113 LARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKAL 172 +AR RA+LRR N+ P++ AV+ + KL + +D + L+ EF +L+ Sbjct: 141 VARCRALLRRSQNQ----PAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELF 196 Query: 173 VSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + HPR SRD+L+ G ++ ++IDV I LR +E +P++P Y+ TV G GY Sbjct: 197 MRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 140/240 (58%), Gaps = 5/240 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 K+LVVDD+ + LLE L + F V++ N ++ + +++LDLMLP G Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + +R+R N P+I++TAK E D++ GLE+GADDY+PKPF+PRE++ARI AVLRR Sbjct: 62 EVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYE 121 Query: 125 NELP-----GAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 P AP + + G F ++ ++ D+ + LT EF +++ LV H + Sbjct: 122 KSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQV 181 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 LSRD+L+ G +YS R +D+QI+ LR +E DP P+Y++T+ G GY F G A Sbjct: 182 LSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDDA 241 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K++VVDD+ + +LE L ++G+ V + L+ E +++LD+MLPG DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +R + MPIIM+TAK E+D+++GLE+GADDY+ KPF+ REL+AR++A LRR + Sbjct: 64 VCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + I + + + E + LT EF + L H + ++R+ L Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + G +Y R++DV I RLR +E+DP+HP YI T G+GY Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 145/228 (63%), Gaps = 3/228 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDD+ + L+ L + +V + E+ + + +++LD+MLP DGLS Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+++R SN +PIIM+TAKG+++D+I+GL+ GADDYI KPFN E+ AR++A+LRR N Sbjct: 73 VCQQIREFSN-VPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR--N 129 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Q+ VI G K++ +R ++ D+ + LT+ EF +L+ L +P + SRD L Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + G++Y+ R++DV + RLR +E +P+ P+Y+ T WG+GY F Sbjct: 190 LKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFN 237 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 135/235 (57%), Gaps = 4/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 MQ IL+ +DD + L+ +L ++G+Q+ A+ + RL+ + L++LD+M+P Sbjct: 3 MQRT-TILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPH 61 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG + R +R Q MPII ++AK + D+I GL +GADDY+ KPFNP ELLAR+ A L Sbjct: 62 MDGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQL 121 Query: 121 R--RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 R RQ N+ AP+ + I G ++ R + ++ + LT EF +L L SHP++ Sbjct: 122 RRFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKK 181 Query: 179 PLSRDKLMNLARGRE-YSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 S + + G Y + ++ V I LR+ + ED H ++I+TVWG+GY F Sbjct: 182 VFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 329 bits (844), Expect = 7e-89, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 141/233 (60%), Gaps = 2/233 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ YK+L+VDD+ + ++E+ L + +++ N E +ES L++LD+MLP Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR +R S +PI+M++AKGE +D+ VG +GADDY+ KPF+P EL R++A+L Sbjct: 61 IDGYEVCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALL 119 Query: 121 RRQ-ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 RR E + ++ I+ G+ ++N + E+F +P+ LT EF +L + HP + Sbjct: 120 RRSFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQV 179 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R++L EY +I V I +LR +E DPA P+YIQTVWG+GY F Sbjct: 180 FTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 138/228 (60%), Gaps = 6/228 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+DD + L L ++G++V + + + L++LD+MLP +DG Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C+ +R SN +PIIM+TAK EEVD+++GL++GADDYI KPF +ELLARI AVLRR Sbjct: 62 EVCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 ++L + I F+++L R + + + + L+ EF +LK L+S P +RD Sbjct: 121 SDLSKSQK-----IVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDM 175 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ G + R++DV I LR VE+DP+HP+YI TV LGY F Sbjct: 176 IIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 109/234 (46%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + I +VDD +R L+ +YLT++G+++ VA+ ++ LL R+ L++LD+M+PG Sbjct: 1 MSSSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CR +RS+SN P++ ++A+ E++D I+GLE+G DDY+ KPFNPRELLAR++A+L Sbjct: 61 EDGLSLCRHIRSRSN-TPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREP 179 RR GA S E I FG++ LN RE+ + + L+ EF +L AL+ P E Sbjct: 120 RRATPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEI 179 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++RD+L+N GR +RSID QISRLRR +E DP +P YI+T WG GY FV Sbjct: 180 VTRDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 109/235 (46%), Positives = 161/235 (68%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++ Y +L+VDDD +LRALL +YL G++V ++ + E + + S +++LD+M+PG Sbjct: 1 MEQQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGL + R LR SN +P+IM+TAKGE+ DRIVGLE+GADDYI KPFNPRELLARI+AVL Sbjct: 61 KDGLEVLRDLRPHSN-VPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P+ + I L++ +++ E + + L+S EF +LKAL+ +P P+ Sbjct: 120 RRAKGPENNNPNSGQ--INVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPM 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +RD LM G++++A +RSIDV IS+LR + + P H I+TVWG GY+FV + Sbjct: 178 TRDDLMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 138/230 (60%), Gaps = 3/230 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+LVVDDD ++ +L YL ++G+ V + + + + +++LD+MLP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+ +R S+ +PIIM+TA+ +E DRI+GLE+GADDY+ KPF+P+E+LAR+RA+ RR Sbjct: 62 VCKEIRRTSD-VPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR--L 118 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + E ++ G L+ +R + P+ LT E+ +L+ ++HP + SR +L Sbjct: 119 QPASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + + + ER++D I LR+ + P P YI+T++G+GY V + Sbjct: 179 IEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 1/233 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + K+L+++DD + L++ L++ G + ++ +++LD+MLP Sbjct: 1 MLQK-KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPK 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL +C+RLR +PI+M+T++ EE D++ L GADDYI KPF+ REL AR+ A + Sbjct: 60 LDGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHI 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR E + + F L+ ++ + + +T+ EF +L + +P Sbjct: 120 RRYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTY 179 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SR +L++L G YS E +++ I+RLR +EE+PA P+YI TVWG+GY F Sbjct: 180 SRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 131/236 (55%), Gaps = 5/236 (2%) Query: 1 MQENY--KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML 58 M + KILVVDD+ R+R LL YL + + + N ++ ++ L++LDLM+ Sbjct: 1 MDQTNETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMM 60 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 PG DG+ +CR++R + PIIM+TAKGEE +R+ G E G DDYI KPF+PRE++ R++A Sbjct: 61 PGTDGIEVCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKA 119 Query: 119 VLRR-QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 +LRR A + + V+ F ++ + + + LT E+ +L L P Sbjct: 120 LLRRASQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPD 179 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE-DPAHPRYIQTVWGLGYVF 232 + R+KL+ E+ R++D + RLR + + P + I TVWG+GY F Sbjct: 180 KVYDREKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKF 235 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 96/229 (41%), Positives = 145/229 (63%), Gaps = 7/229 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+LVVDDD + L++ Y +GF+V +V + + + RE+ +++LD+MLPG+DGLS Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR+ +PIIM+TAKGEE DR++GLE+GADDY+ KPF+PREL+ARI+AVLRR Sbjct: 66 LCRRLRAV-RMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P Q + + ++ R++ + +T EF +L L +P+ +R++L Sbjct: 125 ADPATNWQ----LKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREEL 180 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G +Y +R++DV I RLR + P Y+QTVWG+GY F P Sbjct: 181 LGAVWGYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYKFTP 227 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 1/231 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + IL+ DD+ + L+E +L ++G+ V A+ E+ ++ + L+VLD+M+P D Sbjct: 2 KRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G + R++R++ + MPII ++AK + D++ GL +GADDY+ KPF P EL+AR+ A LRR Sbjct: 62 GYEVTRQIRAKHH-MPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 ++ ++ + G ++ R + E + LT EF +L L SHP++ + Sbjct: 121 FLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNV 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + + +Y ++ V I LR+ + ED + I+TVWG+GY F Sbjct: 181 ENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 85/241 (35%), Positives = 143/241 (59%), Gaps = 13/241 (5%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++IL+V+D+ + L+ L ++G++V V + ++ + L++LDLMLPG DGL Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61 Query: 65 SICRRLRSQSN-PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +CR++R S+ +P+IM+TAK +E+++IVGLE+GADDY+ KPF+PRELLAR++A LR + Sbjct: 62 EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 124 ANELPGAPSQEEAVIAF------------GKFKLNLGTREMFREDEPMPLTSGEFAVLKA 171 EL SQ+ + F G + + E++ + LT EF +L Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 172 LVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +V++ + L+R+KL+ G ++ R++DV I LR+ + E P ++TV G+GY Sbjct: 182 MVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYR 241 Query: 232 F 232 Sbjct: 242 L 242 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 113/230 (49%), Positives = 167/230 (72%), Gaps = 1/230 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KI+++DDD ++R L+++YL +QGF + + + +D++L + + L++LDLMLP E+G Sbjct: 2 KKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L IC+RLR +PIIM+TAKG+EVDRI+GLE+GADDY+PKPFNPRELLARI ++ RR Sbjct: 62 LDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRH 121 Query: 124 ANELPGAPSQEEA-VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 EL ++ I F F+ N R + ++ + + LTSGEF++LK + + +PLSR Sbjct: 122 EMELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSR 181 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 D++M LA+G+E +RSIDVQISR+R+++EEDP P+Y++T WG GYVF Sbjct: 182 DQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 137/235 (58%), Gaps = 2/235 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E KIL+V+DD + L+ L ++G+ S + L + F L++LD+MLP Sbjct: 1 MVEQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G + +++R + N P+++++AK EE D+I+GL +GADDY+ KPF EL AR++A L Sbjct: 61 VGGYEVLQKIREKGN-TPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR N + +I ++N+ T E+ D + LT+ EF +LK + +PR+ Sbjct: 120 RRYLN-FSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++++L G Y E ++ V I RLR +E+DP++P YIQT+WG+GY V + Sbjct: 179 TKNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 129/229 (56%), Gaps = 3/229 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KILVVDD+ + L+E L G+ VR V++ E + +L L+VLDLMLP DG Sbjct: 2 KKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +CR LR QSN +PI+M+TA + D+I GL+ GADDY+ KPF+P+EL++RI+A+ RR Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 A E G+ + RE+ + + LT EF +L L H + LSR Sbjct: 122 QTLPGQA---ESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQ 178 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++ + R +DV IS LR +E++ P YI TV +GY Sbjct: 179 QLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 127/232 (54%), Gaps = 5/232 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M EN IL+VDD+ + L+E YL +GF V ++ + ++ + +LD+MLP Sbjct: 1 MNEN--ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPD 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG IC+++R + PIIM+TAK E++D+I+GL IGADDYI KPFNP E++AR++ L Sbjct: 59 IDGFHICQKIREKYYY-PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 RRQANELPGAPSQEEAV--IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 RR Q V +N T + + + LT EF++L L H + Sbjct: 118 RRYMRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGK 177 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + ++L G +Y ++ I RLR + E +P++I+TVWG+GY Sbjct: 178 VVPSEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 140/238 (58%), Gaps = 7/238 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +ILV DDD + +LE LT +GF V ++ ++ L + L++LD+M+P Sbjct: 1 MSVARRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG ++C R+R+ S +PI+++TA+G+ VD++VG +GADDY+ KPF+ EL+ R+ A+L Sbjct: 61 VDGFAVCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAIL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR E + FG ++N TR + D LT EF +L + SHP P Sbjct: 120 RRMPTL------PESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPF 173 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +R+ L+ + + ++ V I RLR +E++PA PR+I+TVWG+GY F P G++ Sbjct: 174 TRESLLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 138/233 (59%), Gaps = 1/233 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E KIL+V+DD+ + +++ L ++G+ + + + E++H++++D+M+P D Sbjct: 2 ERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ RR+R +S +PII+++AKGE+ D+I+GL +GADDYI KPF+ EL+AR++ +RR Sbjct: 62 GIESMRRIREKS-KVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 +E + +G K ++ + + + + LT+ E +LK +P ++ Sbjct: 121 AIYYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTK 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ + G E+ + ++ V + RLR +E+DP +P+ I+TVWG+GY D Sbjct: 181 VQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 322 bits (827), Expect = 7e-87, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 144/234 (61%), Gaps = 3/234 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 ++ K+L+VDD+ +R +LE L+ G+ V + ++ E+ L +E +++LD+M+P Sbjct: 11 LETKEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPK 70 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C+ +R S+ +PIIM+TA G+ DRI GLE+GADDY+ KPF+P+EL ARIRAVL Sbjct: 71 LDGYGVCQEIRKDSD-VPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVL 129 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + +I F ++L R++++++E + LT EF++L+ L+S +P Sbjct: 130 RRTNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPF 189 Query: 181 SRDKLMNLARGR--EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SR ++ G E R +DV ISRLR +E DP++P I T G GY+F Sbjct: 190 SRADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 148/239 (61%), Gaps = 9/239 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL--TRESFHLMVLDLMLPGE 61 + +IL+++DD L L+ YL ++V ++ +L + L++LDLMLP Sbjct: 2 SKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDM 61 Query: 62 DGLSICRRLR----SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 DG+ +C+++R SQ+N +PI+M+TAKG+ DR++GLE+GADDYI KPF PRELLARIR Sbjct: 62 DGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIR 121 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 AVLRR E P + + FG+ + + E+ +D+P+ LT+ +F +L +H Sbjct: 122 AVLRRH--EQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAG 179 Query: 178 EPLSRDKLMNLARGRE-YSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + L+R++L + ++R+IDV ISRLR ++E++P P+ I TV G+GY F D Sbjct: 180 KVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 137/238 (57%), Gaps = 1/238 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + +IL+V+DD + +L +L ++ ++V A+ + RLL + ++ ++LDLMLPG Sbjct: 1 MDQPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL ICRR R+ + PII+ +A+ EV RI+GLE+GADDY+ KPF+ EL+AR++A+L Sbjct: 61 VDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + L + + ++ RE + + LT EF +L HP + Sbjct: 121 RRV-DALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVF 179 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 SR L+N G ++ E +++ I+RLR +E DPA P I TVWG GY G + Sbjct: 180 SRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQR 237 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 133/238 (55%), Gaps = 14/238 (5%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL----------TRESFHLMVL 54 ILV++D+ +R + L E+G+ ++ + L+ + L++L Sbjct: 22 ANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIIL 81 Query: 55 DLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLA 114 D+MLPG +GL +CR +R Q +PI+M++AKG E+DR+VGLEIGADDY+ KPF RE+LA Sbjct: 82 DVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 115 RIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVS 174 R RA+LRR + P V+ F L E + L+ E+ +L+ + Sbjct: 142 RCRALLRRTRIQQATLPP----VLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMR 197 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 HPR R++L++ G ++ +++DV I LR +E DP+HP+YI TV G GY F Sbjct: 198 HPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 147/233 (63%), Gaps = 10/233 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+++D++ + + E + ++GF+ V + + + T E++ L++LD+MLP DG++ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 ICR++R S +PIIM+TAK E D+++G E+GADDY+ KPF+P L+ARI+AV+RR Sbjct: 62 ICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP-LTSGEFAVLKALVSHPREPLSRDK 184 G +E +I F +N TRE+ EP+ LT EF +L LV +PR+ SR++ Sbjct: 121 T--GKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMV--EEDPAHPRYIQTVWGLGYVFVPD 235 L+ G ++ ER++DV I RLR+ + E+ P ++ TVWG+GY F D Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP----FLYTVWGVGYKFDED 227 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 144/234 (61%), Gaps = 3/234 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +KILVVDD+ + +++ YL + GF V + + + + + E+ HL+VLDLMLP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C R+R+ S+ +PIIM+TAK EE ++I G+ +GADDY+ KPF+ REL+ R+RA+L Sbjct: 61 MTGEEVCNRIRAVSS-VPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + +P + G ++++ + ++ + LT+ EF +L +S+P + Sbjct: 120 RRAYRDF--SPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVF 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR+KL+ A G Y +R++D I +R+ +E + P YI TV+G+GY F+P Sbjct: 178 SREKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 107/235 (45%), Positives = 153/235 (65%), Gaps = 2/235 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVV+DD R+L+ +YL G V + A+ +M R++ L+++DLMLP Sbjct: 11 MVAIPSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPD 70 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CR++R++S +PIIM+TA+GE++DRIVGLE+GADDY+ KPFNPRELLARI AVL Sbjct: 71 EDGLSLCRKVRARSQ-VPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVL 129 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREP 179 RRQA+ L + + +F ++++ RE+ + LTS EF +L+A Sbjct: 130 RRQASALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRV 189 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 LSR+ L+ L +G + +RSIDV +SR+RR +E DPA I+TV GY+F P Sbjct: 190 LSREVLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTP 244 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 97/230 (42%), Positives = 136/230 (59%), Gaps = 5/230 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++LVVDDD + +++RYL GF V A+ R+ L+VLDLMLPG DG+ Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + RRLR+ P+P+IM+TA+ +E DRI GLEIGADDY+ KPF+PREL R+++VLRR Sbjct: 116 EVFRRLRAH-RPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRAN 174 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 +PGA E V+ G ++ R R P+ LT EF +L L+ P +R + Sbjct: 175 ETVPGA---EAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGE 231 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+ G Y ++ V I RLR +E+DP PR + TVWG+GY + P Sbjct: 232 LLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 133/236 (56%), Gaps = 7/236 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M KIL+VDDD + L+ YL ++ F + V + E+ +L++LDLMLPG Sbjct: 1 MATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR +R S +PIIM++AKGE D+++GLE+GADDY+ KPF+ +EL+AR++AVL Sbjct: 61 IDGYEVCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVL 119 Query: 121 RRQANELPGAPS----QEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 RR + + +++ +N + + + + E + L SHP Sbjct: 120 RRVVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHP 179 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + +R++L++ G EY R++DV I RLR +++ + + TVWG+GY F Sbjct: 180 NQVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKF 233 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 84/234 (35%), Positives = 134/234 (57%), Gaps = 3/234 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 K+LV DDD +R ++ Y +Q ++ + + + ++ +E +++LD+M+P D Sbjct: 31 STMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLD 90 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G CR +R + + PIIM+TAK EE DR++GLE+GADDY+ KPF+PRE++ARIRA++RR Sbjct: 91 GFEACREIRKKWD-TPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + F + ++L RE+ E + EF +L LV P SR Sbjct: 150 LQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSR 209 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 ++L+ G +Y R+IDV I ++R+ +++ P IQTVWG+GY F D Sbjct: 210 EQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVDS 261 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 96/237 (40%), Positives = 147/237 (62%), Gaps = 9/237 (3%) Query: 1 MQEN-YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M E+ ++ILV DD+ ++R LL L ++G++ + +N + L E+FHL++LD+M+P Sbjct: 1 MSESMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 DGL+ C R+R SN +PII++TA+ EE+DRI GL+IGADDYI KPF+PRELLARI A Sbjct: 61 ELDGLTACMRIREFSN-VPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEAT 119 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR + ++EA G +++ R + + + + LT EF +L +++ + Sbjct: 120 LRRTHSFS----KEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKV 175 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 SR++L++ G EY R++D I LR + E YIQTVWG+GY F +G Sbjct: 176 FSREQLLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 100/233 (42%), Positives = 145/233 (62%), Gaps = 3/233 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + KILVVDD+ +R +LE LT G++V + +N E+ + +E L+VLD+M+P Sbjct: 3 NQKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKL 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG +C+ LR +S+ +PIIM+TA GE DRI GLEIGADDY+ KPF+P+EL ARIR+VLR Sbjct: 63 DGYGVCQELRKESD-VPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R +I+ G K++ R++++ +E + LT EF++L+ LVS EP S Sbjct: 122 RADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 182 RDKLMNLARGR--EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R ++ G E R +DV ISRLR +E+DP++P I T G GY+F Sbjct: 182 RASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 5/232 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+E KIL+VDD+ + L+E YL + F V +AE+ + +E L +LD+M+P Sbjct: 69 MKE--KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPK 126 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 GL +C+++R + N PIIM+TAKG E+D+I GL +GADDYI KPF P E++AR++A L Sbjct: 127 ISGLELCKKIRERYNY-PIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 185 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR G EE ++ LN T E F + + LT EF++L L + Sbjct: 186 RRYKRYNMGTVKAEE-ILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVV 244 Query: 181 SRDKLMNLARGREYSA-MERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 S ++L + EY + +I V I LR +E+ +P+YI+TVWG GY Sbjct: 245 SAEELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYK 296 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 135/230 (58%), Gaps = 2/230 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + ILVVDD+ + L+ L + +QV SV N ++ + +++DLMLP DG Sbjct: 2 SKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +++R +PIIM+TAK +VD+I+GLE+GADDYI KPF+P+ELL+RI+ +LRR Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + A + + + ++ + + +E + LT EF +L+ L + + LSRD Sbjct: 122 DRAINLA--EIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRD 179 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +++ G EY R +D+ IS LR +E DP HP+ I+T+ G GY FV Sbjct: 180 QILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 131/234 (55%), Gaps = 3/234 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+VDD+ R+R LL+ YL + F++ +N ++ L ++ ++LDLMLP DG+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 +LR PIIM+TAKGEE +R+ G E GADDYI KPF+PRE++ R++A+LRR + Sbjct: 65 ATKLREH-KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 127 L-PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + VI F +++ + +++ + LT E+ +L L P + R++L Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRY-IQTVWGLGYVFVPDGSK 238 + E+ R++D + RLR + + + IQTVWG+GY F + Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSND 237 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 101/238 (42%), Positives = 148/238 (62%), Gaps = 4/238 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 +IL+VDDD +L L+ YLT G+ V S + + +L FH ++LD+M+P Sbjct: 8 STKIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKM 67 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG + ++LR QS+ +P++M+TA GEE DRIVGLE+GADDY+PK F+ RELLAR+RAV R Sbjct: 68 DGFEMLKQLRKQSD-IPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTR 126 Query: 122 RQANELPGAPSQE--EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 R + + + + G+ +++L R + +P+ LT E+ +L L P Sbjct: 127 RHRLSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARV 186 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV-PDG 236 LSRD+L++ GR Y +RS+DV IS LRR + EDP +PR+IQTV +GY+F PD Sbjct: 187 LSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDPDA 244 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 141/232 (60%), Gaps = 7/232 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ++L+VDDD L +++ L +GF V + + + + +++ ++LD+MLP D Sbjct: 2 PDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMD 61 Query: 63 GLSICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C ++R+ ++ +PIIM+TAK EE D+I+GL++GADDY+ KPF+PREL+AR+RA++ Sbjct: 62 GWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALI 121 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + ++ ++ G ++ + ++F +D + L EF +L L+ +P Sbjct: 122 RRDQDF-----KDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVF 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R++++ G ++ R++D + R+R+ +E + IQTVWG+GY F Sbjct: 177 TREEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKF 228 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 132/227 (58%), Gaps = 3/227 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ + L+E YL + + V A++ + + L +LD+MLPG GL+ Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC+++R + + PIIM+T K EVD+I GL IGADDYI KPF P EL+AR++A LRR Sbjct: 64 ICQKIRDK-HTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 G Q E VI +N+ T E + ++ + LT EF++L+ L + +S + L Sbjct: 123 -FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELL 181 Query: 186 MNLARGREYSA-MERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + G EY + +I V I LR + + +P+YI+TVWG+GY Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYK 228 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 132/228 (57%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD+ + LL L ++ F+V + + Q + ++ F ++LDLMLP DG+ Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++ +++R PI+++TAK E D+IVGLE+GADDY+ KPF+PRE++ARIRA+ RR Sbjct: 62 AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTT 121 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + Q I G ++ + D + LT EF +L + + SR+K Sbjct: 122 QPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREK 181 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+N G +Y A R +D+Q+S LR +E++P HP Y++TV G GY Sbjct: 182 LLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQL 229 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 145/233 (62%), Gaps = 6/233 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + IL+V+D+ ++ L YL GF+ + ++ R + +E+ L++LD+MLPG Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DG+ +C+ LRS S +PIIM+TA+ EE+DR++GLE+GADDYI KPF+PRE++AR++AVL Sbjct: 61 KDGMEVCKELRSFSQ-IPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P +E I G L+ +RE+ + LT EF +LK ++S P Sbjct: 120 RRS-----NTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVF 174 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SR++L++LA G ++ +R+ID I LR+ +++ I +++G GY F Sbjct: 175 SRNELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 131/229 (57%), Gaps = 1/229 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + KIL++DD+ + L++ YL + GFQV + N L + L++LD++LP +G Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L +C+ LR + PI+ ++ K ++D+I+GL +G DDYI KPF+P EL+ARI A LRR Sbjct: 63 LELCQNLRKITES-PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRN 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 S + +++ ++ ++ +D+P+ LT EF +L L HP S Sbjct: 122 RILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLT 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L + G + R++ V IS LR+ +E+DPA+P+ I T+ G+GY Sbjct: 182 QLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 133/235 (56%), Gaps = 9/235 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+V+DD ++ L+ L +G+ V + LL +E L++LD+MLP DGL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 66 ICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C+++R ++ +P+IM++A+ E DR++GLE+GADDYI KPF+PRELLARI+A LR + Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P + +G ++ + + + E + LT EF +L + P + SR+ Sbjct: 123 RRNSTPPPLS----LTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSRE 178 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 L+ G S R++DV IS LR ++ + I++V G+GY + S+ Sbjct: 179 YLLQKVWGYTVSGDTRTVDVHISNLRSKLK---SVSPIIESVRGVGYRLAVNYSR 230 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 151/243 (62%), Gaps = 6/243 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVVDDD +RALL YL + GF+ S A+ +M R+L + L+VLD+MLPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGL++CR+LR++S +P+IM+TA ++ DRI+GLE+GADDY+ KPFNPREL+ARIR VL Sbjct: 61 DDGLTLCRKLRARS-ELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVL 119 Query: 121 RRQA----NELPGAPSQEEAVIAFGKFKLNLG-TREMFREDEPMPLTSGEFAVLKALVSH 175 RR N P I F + L+ + + + L+ E+ +L+ + + Sbjct: 120 RRARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKY 179 Query: 176 PREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 P +SRD+L++L +GR A +RSIDV +SRLR + ++ P+ I+TV G GY D Sbjct: 180 PNRVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATD 239 Query: 236 GSK 238 + Sbjct: 240 VER 242 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 11/238 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 IL+V+DD + L+ L + F + E R+ + L+VLDLMLP DGL Sbjct: 12 PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71 Query: 65 SICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 +C R+R Q S I+M+TAKGEE+DRI+GL GADDY+ KPF+PREL+AR+RA+LRR Sbjct: 72 EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFR----EDEPMPLTSGEFAVLKALVSHPRE 178 Q + + F+++L + R E + LT EF +L +S+P Sbjct: 132 QLRQGQPV----GQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGR 187 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF-VPD 235 +R +L+ G ++ ER +D I RLR+ +E DPA+P +I+TV GLGY F PD Sbjct: 188 VWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 137/233 (58%), Gaps = 5/233 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E ILV++DD + +L YL +G++V + E R HL+++DLMLP Sbjct: 12 MTET--ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPK 69 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR++R QS +PII+V+A+ ++D+I L +GADDYI KPF+P EL+AR+++ L Sbjct: 70 VDGFEVCRQVRQQS-EVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR ++E V++F +N R + + +P+ LT EF +L L P + Sbjct: 129 RRYHRY--NGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVF 186 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 S+++L N ++ + R++ V I +RR + + HPR+I TVWG+GY F+ Sbjct: 187 SKEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFI 239 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 137/240 (57%), Gaps = 6/240 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + +L+V+D+ ++R +L +L ++ F V +L + L++LD+M+PG Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG + CR++R S +PI+ +TA+GEE DR++G E+GADDY+ KPF+PREL+ R++A+L Sbjct: 61 LDGWTTCRKIREFS-EVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALL 119 Query: 121 RRQANELPGAPSQEEAV----IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 RR+++ P +E + F + L R+ + E + L+ E+ +L L + Sbjct: 120 RRRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNA 179 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE-DPAHPRYIQTVWGLGYVFVPD 235 LSRD L++ G E++ R++D + RLR + PA Y+ TV G GY F + Sbjct: 180 GRVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 85/243 (34%), Positives = 131/243 (53%), Gaps = 11/243 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 I+V DD+ + + RYL +G +V N E+ RL L+VLDLM+P DGL Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C +R Q++ PIIM+TA+GEE DR++GL +GADDY+ KPF+PREL+ R+ +LRR Sbjct: 63 EVCDLIR-QTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAG 121 Query: 125 NELPGAPSQEEA----------VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVS 174 +P + +A I + R + + + LT EF +L L Sbjct: 122 WRSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAM 181 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +P + SR +L+N + ++ V + RLR +E +P+ P +I+TVWG+GY Sbjct: 182 YPGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKLDN 241 Query: 235 DGS 237 G+ Sbjct: 242 KGN 244 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 147/234 (62%), Gaps = 7/234 (2%) Query: 1 MQENY-KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ N ++L+++D+ + +++ YL + ++ N ++ + ++SF ++LDLMLP Sbjct: 1 MEANKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G IC+R+R QS +PI+M+TAK EE DRI GL+IGADDY+ KPF+P+EL+AR+RA+ Sbjct: 61 DLSGEEICKRIRLQSQ-VPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAI 119 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 +RR NE A E + G K++L E +++DE + LT+ EF +L + + + Sbjct: 120 MRRTNNEGLKAHLIE---LNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKV 176 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SRD+L+ G +Y +R+IDV I LR +E + +YI TV+G+GY FV Sbjct: 177 FSRDELVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFV 228 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 137/236 (58%), Gaps = 7/236 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ +L+VDD+ + AL+ +L +G+ V + + R L E ++LD+M+PG Sbjct: 1 MERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G + RR+R + +P++ +TA+ E+ D+I GL +GADD+I K P E++ARI+AVL Sbjct: 61 PSGYDVLRRIRENRD-VPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P AV+ FG+ +++ E+ + +P+ LT+ EF +L+ HPR+ Sbjct: 120 RRYRRGEPA----PRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 +R++L G ++ V I RLR +EEDPA+PRYI TVWG+GY F + Sbjct: 176 TREQLFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEA 229 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 136/229 (59%), Gaps = 4/229 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Y +L+V+D+ + +E YL QG+ V +N + ++ ++ HL ++D+M+P DG+ Sbjct: 4 YNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGI 63 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++ +LR + P+IM+TAK EE+D+I+GL IGADDY+ KPFNP EL+AR+ + LRR + Sbjct: 64 TMVMKLRENYD-FPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYS 122 Query: 125 NELP--GAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 L Q+ + + G +LN T+E+ + E + +T EF +L+ L+ +P S Sbjct: 123 KYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSA 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +++ E + ++ V + +R +E D +P+Y++ VWG+GY Sbjct: 183 EEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYK 230 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ILVVDD+ LR +L YL ++GF V + + + E L+VLDLM+P G Sbjct: 3 TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 R +S P+I++TAK E+ D+I+GLE+GADDY+ KPFN REL+ARIRAVLRR Sbjct: 63 FLRAFAKESR-TPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E V+ L+ R + + LT EFA+L L++ P + SR L Sbjct: 122 T-----PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDL 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ G + ER+IDV I LR +E DP HP+YI+TV+G+GY F Sbjct: 177 LDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 135/230 (58%), Gaps = 9/230 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E +L+VDD+ +R L+ YL F N E+ ++L ++++D+M+P D Sbjct: 2 EKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G ++C R+R QS+ +PI+ +TA+G+E D++ GL++G DDYI KPF+P EL+ARI A++RR Sbjct: 62 GFTLCARIREQSD-VPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + Q+ ++FG ++ R++ + +P+ LT EF +L L H + SR Sbjct: 121 AYHN-----KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSR 175 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + L+ G +Y+ R++D I LR +++ +IQTVWG+GY F Sbjct: 176 EDLLAQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKF 222 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 125/233 (53%), Positives = 167/233 (71%), Gaps = 3/233 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGEDG 63 +ILVVDDD ++ LL RYL EQGF VR V + +MD L + L+VLD+MLPGEDG Sbjct: 15 PRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDG 74 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 LSI RRL ++ P P+IM++A+GE++DRIVGLEIGADDY+PKPFNPRELLARIRAVLRRQ Sbjct: 75 LSIARRLDPKTRP-PVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQ 133 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 E P A +++ I G F ++ TR+ F D + LT GE+ +L+ + P ++RD Sbjct: 134 RME-PDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRD 192 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 ++M+ +G E SA +RSIDV+I+RLRR +E +P PRY+ T+WG GY+F P G Sbjct: 193 QIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSG 245 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 146/236 (61%), Gaps = 4/236 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++ +IL+V+DD RL L + YL + G V + + R + E L+VLD+MLPG Sbjct: 7 EQTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGS 66 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL++CR +R + PI+M+TA+ E++D+++GLE+GADDY+ KP PR LLARIRA+LR Sbjct: 67 DGLTVCREVRPHYHS-PILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLR 125 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R N Q + FG+ ++ G R + E + TS E+ +L L S+ LS Sbjct: 126 RSENAPSEEIPQR---LEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILS 182 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 R+ + RG EY +RSIDV+ISR+R + +DP +P+ I+TV GY+FV +G+ Sbjct: 183 REDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEGN 238 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 140/232 (60%), Gaps = 8/232 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVVDDD + LL +L F V + +N E+ + + ++LD+M+PG Sbjct: 1 MNAK-TILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPG 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 E+G + CRR+R++S+ +PI+ ++A+ +VD+I GL +G DDYI K +P E++AR++AVL Sbjct: 60 ENGFAFCRRIRAKSD-VPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A+ P E ++ FG LNL TRE+ + + + LT E+ +L+ + HPR Sbjct: 119 RRSASNQPPT----ETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVF 174 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 S D+L++ + + ++ V +SRLR +E +P P+YI VWG+GY F Sbjct: 175 SYDQLLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRF 224 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 2/228 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 + +L++DD++ + L+E YL +G++V N ++ E H++VLD+M+PG DG Sbjct: 2 FNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C ++R N +PIIM++AK ++VD+I GL GADDY+ KPFNP EL+AR+++ +RR Sbjct: 62 QVCMKIRKDYN-IPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 125 -NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 S + +I F +N ++ + + LT E+ +L L ++ S + Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + +Y ++ V I RLR +EE+P P+ I+TVWG+GY Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYK 228 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 2/231 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++N IL+VDDD + + L ++GF+V S N E+ +++ S L +LD+M+P Sbjct: 16 MEKN-SILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPH 74 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+ +CRR+R + + +PI+ ++AK +VD+++G GADDYI KPF+ E +AR++A L Sbjct: 75 MDGIELCRRIREK-HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQL 133 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A E I+ +++ +R + E + LT E+ +L + + Sbjct: 134 RRYTYFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVF 193 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + +++ ++ V I+RLR +EE+P P++IQ VWG+GY Sbjct: 194 TIEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYK 244 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 145/243 (59%), Gaps = 9/243 (3%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 E ++IL+V+DD RL L + YL G V N + + E L+VLDLMLPGE Sbjct: 23 NEAWRILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGE 82 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGLSICR++R N PI+M+TA+ +++D+++GLE+GADDY+ KP PR LLARIRA+LR Sbjct: 83 DGLSICRKVRPSYNG-PILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLR 141 Query: 122 RQANELPGAPSQE--------EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALV 173 R + A + F ++ RE + ED+ + LTS EF +L L Sbjct: 142 RVKEQGEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLA 201 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 S LSR+++ RG EY +RSIDV++SR+R + +DP HPR I+TV GY+FV Sbjct: 202 SSAGRVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFV 261 Query: 234 PDG 236 + Sbjct: 262 KEA 264 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 132/228 (57%), Gaps = 2/228 (0%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+VDDD ++ + + YL+++GF++ A + +L L++LD+ LP DG + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN- 125 CR +R+++ +PI+ ++ + +++D+I+G IG DDYI KPF+P L+A++++ +RR Sbjct: 66 CRIIRTKT-KVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKEL 124 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + FG+ ++ E+ RE +P+ L + EF +L L + S + L Sbjct: 125 SGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHL 184 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + G++ R++ V IS LR+ +E+DPA P YI TV G+GY F Sbjct: 185 FDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFN 232 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 133/232 (57%), Gaps = 4/232 (1%) Query: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 L+VDDD +R L YL GF V + L + +MVLDLMLP DG + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 68 RRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANEL 127 +R + +P+IM+TA G+E DRI+GL+ GADDY+ KPF+PREL++R+RAVLRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL-- 119 Query: 128 PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMN 187 AP+ E ++ +++ R + D+ + LT EF +L L SHP++ SR+ L++ Sbjct: 120 --APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLD 177 Query: 188 LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 G ++ R++DV ++RLR+ + Y++TVWG GY FV A Sbjct: 178 RVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKARSA 229 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 140/226 (61%), Gaps = 3/226 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+V+D+ L L L ++GF+ V + R +++LDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C++LR++S+ +P+IMVTA+ E+D++VGLE+GADDY+ KP++ REL+ARIRAVLRR A+ Sbjct: 64 CKQLRARSS-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 ++ V+ G ++++ + EP+ L EF +L+ L+ + L+R +L+ Sbjct: 123 DDA--GADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLI 180 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G +Y +++DV + RLR +EEDPA+P ++ TV GLGY Sbjct: 181 DRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 132/233 (56%), Gaps = 5/233 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E KIL++DD+ + LLE YL + + V A + L +LD+MLP Sbjct: 18 MSE--KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPD 75 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +G S+C+ +R + PIIM+TAK EE D+I GL +GADDY+ KPF P E++AR++A L Sbjct: 76 MNGFSLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134 Query: 121 RRQANELPGAPSQE-EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 RR PG +++ + +++ K LN+ T E + E + LT EF++L L+S Sbjct: 135 RRYKKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNV 194 Query: 180 LSRDKLMNLARGREYSA-MERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +S ++L + EY + +I V I LR + + P+YI+T+WG+GY Sbjct: 195 VSIEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 133/231 (57%), Gaps = 1/231 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++L+ DD+ + LL YL + G + S N + +++ + ++D+M+P DG Sbjct: 2 ARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGY 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + R++R + MP+IM++AK E D+I+GL++GADDYI KPFN E+LAR++A LRR Sbjct: 62 HLVRKIRENYD-MPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + E+ + GK +LN+ T +++E+ + LTS E+ +L L+ + + ++ + Sbjct: 121 KSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + + + +I V IS LR +E+D +P YI+T+ GLGY + Sbjct: 181 IFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 135/229 (58%), Gaps = 5/229 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 K+L++DD+ + L++ L +G +V + + A +E+ L++LD+MLP +G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 IC+++R S+ +PII ++AKGEE D+IVGL IG DDYI KPF+P+E+ R++A LRR + Sbjct: 99 DICKQIRDISH-VPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 PSQ +I G F+LN E+ + + + LT E ++ + HP +S++ Sbjct: 158 YL---QPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKET 214 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L G ++ + ++ V I RLR +E P+ P ++ TV GLGY FV Sbjct: 215 LYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 118/234 (50%), Positives = 163/234 (69%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +IL+VDDD LR LL YL QG +V + +A +++ L RE L+VLDLM+PG DG Sbjct: 66 TTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDG 125 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L+ R+LR+ + +P+IM+TA+ ++VDRIVGLE+GADDY+ KPFNPRELLAR++AVLRR+ Sbjct: 126 LTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 185 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 A ++ AFG+F L+ R + + +P L+S EFA+LK V+H L+R+ Sbjct: 186 RATPSAAAPEQREPFAFGRFVLDFQARTLSIDGKPATLSSSEFALLKIFVNHALRTLTRE 245 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +L+ L G EY +R IDVQ+ RLRR++E DP+ PR+IQTV G GYVFVPDG Sbjct: 246 RLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 299 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 130/229 (56%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+VDD+ + ++ +GF V + E L E++ L++LD+ LPG DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R++R++ P+IM+TA+ +EVDR+VGLE+GADDY+ KPF+PREL+AR+RA+LRR A Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +A +L+ R D + L EF +L L SHP + +R+ L Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G + R++DV I RLR + E A IQT WG+GY F+ Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 134/233 (57%), Gaps = 6/233 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + ++LVVDDD +R ++ RYL G+ V + E RL L+VLDLMLPG Sbjct: 6 EAAARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGV 65 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 GL +CRRLR + +P++M+TA GEE DR+VGLE GADDY+ KPF+PREL+ R+ ++LR Sbjct: 66 GGLEVCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILR 124 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R P E V+ G +L+L R + + LT EF +L L+ HP S Sbjct: 125 RARTSQPA----EGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R +L+ G + ++ V + RLR VE DPA P I TVWG+GY + P Sbjct: 181 RAELLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 136/230 (59%), Gaps = 3/230 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+V+D++ + L+ L +GFQV + + + E F+L +LD+MLP DG Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + + +R +++ P+IM+TAK ++D++V +GADDYI KPF+ EL AR++AVLRR Sbjct: 63 VLQYIRRKTSK-PVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121 Query: 126 ELPGAPSQ--EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 +Q +E ++ G ++N T E+ + + L + EF +LK L P ++ Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ G+E+ + ++ V ISRLR +EEDPA+P+ +QTV GLGY V Sbjct: 182 QIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 139/237 (58%), Gaps = 2/237 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 EN IL+VDD+ + +++R LT++GF +V + ++AE+ ++ +++ HL++LD+M+PG+ Sbjct: 2 ENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQ 61 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G + +R +N PI +TAK ++D++ G GADDYI KPFNP EL+ARI+A L+ Sbjct: 62 TGFDVSPEIRRHTNA-PIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLK 120 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R A + + + +F + E+ + E + ++ +L+ HP LS Sbjct: 121 RTYIHKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +D++ G ++ V I +LR +E+DP+ P YI T+ GLGY FVP+ ++ Sbjct: 181 KDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPNPAR 237 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 N ILVV+DD + + RYL G + A+ + DRL R L+VLD MLPG D Sbjct: 10 PNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVD 69 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL++C R R P++M+TA+ EE R+ L GADDY+ KPF+ +EL+AR++A+LRR Sbjct: 70 GLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRR 129 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 S + ++ TR++ P+ L + EF +L L HP SR Sbjct: 130 AYASGYRDCSPKN------GLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSR 183 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D+L+ G ++ R+IDV + +LR +E DP P Y+ TVWG+GY F Sbjct: 184 DELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + ILVVDDD +R LL YL + GF V AN +M R++ +E +L+VLDLMLPG Sbjct: 1 MSDQNHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CR +R+Q + +PIIM+TAKG VDRI+GLE+GADDY+PKPF+PRELLARI+ +L Sbjct: 61 EDGLSLCREVRAQGD-LPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVIL 119 Query: 121 RRQANELPGAPSQEE-AVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPRE 178 RR N+ A +E + I+F ++L+ R+MF E + L S ++ VL+AL+ HP Sbjct: 120 RRTRNDRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNR 179 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 PLSRD L+ G+E AM+RSIDV ISRLR +E D +P I+TV GY+ Sbjct: 180 PLSRDFLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLA 234 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 144/236 (61%), Gaps = 3/236 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + +L+V+DD RL L YL G +V + + E L++LDLMLPGED Sbjct: 6 HTWHVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGED 65 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G SICR +R + + PI+M+TA+ ++ D I GL+ GADD++ KP +PR LLARI+A+LRR Sbjct: 66 GFSICRSVRDRYDG-PILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRR 124 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 E P P+ E + FG ++ RE + ++ + LT EF +L LV++ LSR Sbjct: 125 S--EAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSR 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +++ RG Y +RSIDV+ISR+R + +DP HPR I+TV GY+FVP+ ++ Sbjct: 183 EEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQ 238 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 138/230 (60%), Gaps = 1/230 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+V+DD+ + LLE ++ + +V SV + + F L++LDL +P +G+ Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR N PIIMVTAK EE+D+++GLEIGADDYI KPF+ REL AR +AV+RR Sbjct: 69 VCRELRKTKN-TPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + A + FG K+N+ R + E + + L+ EF +L L ++P SR +L Sbjct: 128 ANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSEL 187 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +++ G +S E +++ I+RLR +E D +P YI T WG+GY F D Sbjct: 188 LDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 132/232 (56%), Gaps = 6/232 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N KILVVDD+ ++R +L+ +L + F + ++ ++ + + L++LDLMLP G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C+++R Q PI+M+TAKG E D++ G GADDY+ KPF+ RELLARI+A+LRR Sbjct: 62 EEVCQKIR-QDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRS 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + A E V G+ K++ ++ LT EF +L L+ +P + +R+ Sbjct: 121 NQKAEKA---EIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTRE 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +L G EY +R+ID I +R+ + + + I TV+G+GY F D Sbjct: 178 QLAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 134/233 (57%), Gaps = 4/233 (1%) Query: 1 MQENYK-ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M + + ILVV+DD+ + L L +G++V + ES L+VLD+MLP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +G + + LR + P+++++AKG E D+IVGL +GADDY+ KPF +ELLARI+AV Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR+ P A + + FG +++ R + R P+ LT+ EF +L ++HP Sbjct: 121 LRRRY---PSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRT 177 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R++L++ A G Y R++D + +LR E DP PR+ TV GLGY F Sbjct: 178 FTREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 135/230 (58%), Gaps = 2/230 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 +N +L+V+D+ + +++ YL+ F V + L + ++LDL LP D Sbjct: 2 KNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ ICR++R SN + I++++A+G + D+++GL GADDY+ KPF+ EL+ARI A LRR Sbjct: 62 GIEICRKIREHSN-VAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Q L Q++ V+ +N R+++P+PL++ EF +L L + + S+ Sbjct: 121 QDRWLQDHDVQKD-VLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++ G + E +I V I R+R +E +P+HP Y+QTVWG+GY F Sbjct: 180 SQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 155/239 (64%), Gaps = 3/239 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 IL+V+DD + L+ RYL +V ++ +MDRLL L+VLDLMLPGE Sbjct: 15 TSTPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGE 74 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGLSICRRLR+QS MPI+M+TAK EE+DRIVGLE+GADDY+ KPFNPRELLARIRAVLR Sbjct: 75 DGLSICRRLRAQS-TMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLR 133 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPL 180 R + + F F L+ G R++ + + LT+ EF +L A+ P L Sbjct: 134 RGSG-GSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVL 192 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 SRD+L++L +GR ERSIDV +SR+R+ +E D +P I+T+ GYVF P+ S+A Sbjct: 193 SRDQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVSRA 251 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 140/227 (61%), Gaps = 3/227 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILV +D+ +R+ + L G++V N + +++F +++LD+M+P DG + Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C + RS+ + IIM+TA+ E D+++GL +GADDYI KPF+P ELLARI+++LRR Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +E + G F+++LG + + + + +T E+ +L + + + +SRD+L Sbjct: 123 LRRRKQPRE---LVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDEL 179 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ G Y +++DV I RLR+ +EE+PA P++I+T+WG GY + Sbjct: 180 LDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 5/235 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLT-RESFHLMVLDLMLP 59 M+ KILVVDDD + L+E +L +G++VR +A +L E L +LD+M+P Sbjct: 21 MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G DGLS+ +++R S+ +P+IM++AK ++D+IVGL GADDY+ KPFNP EL AR++A Sbjct: 81 GMDGLSMVKKIRETSH-IPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKAN 139 Query: 120 LRRQANELPGAPS---QEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 LRR G + + +I G +N TRE+ D+ LT E+ +L L S+P Sbjct: 140 LRRFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNP 199 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 S D + + ++ V I RLR +E D + + I+TVWG+GY Sbjct: 200 GRVFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYK 254 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 7/229 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+D+ ++R +L ++L ++GF+V A+ + ++ L+VLDLMLPG G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 +++R + N PII++TA+ +EVD+++GLE+GADDYI KPF+PREL RI+AVLRR Sbjct: 65 MKKIRQK-NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSR-- 121 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P ++ ++ +N E D + LT EF +L L +P + SR ++ Sbjct: 122 ----PHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHIL 177 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 G Y ER+ID IS LR +E I+TV+G+GY V + Sbjct: 178 ERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 137/229 (59%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILV +DD +R L L +G+ V + + + R+ SF L +LD+M+PG +G Sbjct: 5 RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR + + IIM+TAKGEE+D+++GLE+GADDYI KPF EL ARI AVLRR Sbjct: 65 VCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSRR 124 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 PGA + + +A G ++ T LT+ E +L+A HP E L R+ L Sbjct: 125 TAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPRNTL 184 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +NLA G +Y R++D I++LR+ +E DPA P+ I TV G+GY +V Sbjct: 185 LNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYVA 233 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 137/232 (59%), Gaps = 6/232 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+++DD + +++ YL + F+V A+ E ++ L+++DLMLP DG ++ Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C ++R+ S+ +PII+V+AK + D++ +GADDY+ KPF+P EL AR++A +RR Sbjct: 63 CEKIRA-SSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERS 121 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P Q+E + F ++++ R +F E + LT+ EF +L L +HP ++++L Sbjct: 122 YP----QQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELY 177 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 + R++ V + +R +++ HP+YI+TVWG+GY F+ G++ Sbjct: 178 AAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIGLGNR 228 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 139/235 (59%), Gaps = 7/235 (2%) Query: 1 MQEN---YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLM 57 M EN Y +L+++D+ L +L+ YL ++G+QV + + L +++ ++VLDLM Sbjct: 1 MSENTNCYTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLM 60 Query: 58 LPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 LP G I R++R + PI+M+TAKG E ++I GL IGADDY+ KP +PRE++AR++ Sbjct: 61 LPNMSGEEIARKIRKE-QETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLK 119 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 +LRR E ++ +I G+ ++ ++++ + LT EF +L L +P+ Sbjct: 120 TILRRVGKEP---GRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPK 176 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + SR+ L + G + R+ID I LRR +E++P P +I+TV+G GY F Sbjct: 177 KVFSRENLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 10/234 (4%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++ + VV+DD + L+ +L GF VR+ + + +L +LD+M+PG Sbjct: 1 MKQT--VFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPG 58 Query: 61 EDGLSICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 DGL ICR++R + P+I +TAK E D+I GL++GADDYI KPF+PREL+ARI+A Sbjct: 59 ADGLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKA 118 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 VLRR LP A V+ G ++ G + + T+ EF +L+ L HP Sbjct: 119 VLRRFERPLPPA------VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGR 172 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +RD+L++ + RS+DV + R+R +EE+P PRY++TV G GY F Sbjct: 173 VFTRDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRF 226 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 135/226 (59%), Gaps = 8/226 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDDD L +L L +G++ V++ + + +++LDLMLPG +GL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC+ +R+QS +PI+M+TAKG+ +D + GLE GADDY+ KPF P EL+AR+RA LRR Sbjct: 77 ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR--- 132 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + ++ G ++++ ++ R+ P+ LT EF +L AL PR+ +R+ L Sbjct: 133 ----GETGQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELL 188 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + G ++A R ++V + RLR +E DP P + TV G+GY Sbjct: 189 LEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 101/236 (42%), Positives = 151/236 (63%), Gaps = 8/236 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ++L++DDD RL ALL YL GF VR+ A+ R L + L++LD+MLP D Sbjct: 14 DPTRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTD 73 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL++CR +R+ S +PIIM+TA+G+ DRIVGLE+GADDY+PKPF PREL+ARI+AVLRR Sbjct: 74 GLAVCREVRADSR-IPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR 132 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + G ++N TR + + LT+ EF +L L + +SR Sbjct: 133 GTR-------DDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSR 185 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 D++++ RG ++ A +RSID+ +SRLR+ + +DP P +I+TV G+GY F+ G + Sbjct: 186 DRILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGGRE 241 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 137/226 (60%), Gaps = 4/226 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+V+D+ L L L ++GF+ V + R +++LDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C++LR++S+ +P+IMVTA+ E+D++VGLE+GADDY+ KP++ REL+ARIRAVLRR ++ Sbjct: 64 CKQLRARSS-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + V+ G ++++ + + + L EF +L+ L+ + L+R +L+ Sbjct: 123 DS---EMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLI 179 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G +Y +++DV + RLR +E DPA+P ++ TV GLGY Sbjct: 180 DRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 309 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 2/228 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+DD ++ + + YL GF+V A+ + ++ + L++LD+MLPG DG Sbjct: 2 KKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++CR LR + +P++MVTA+ EEVD + GL +GADDYI KPFNP EL+AR+R+ + R Sbjct: 62 AVCRELR-RYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 L E+ V+ G ++ L +F + + +P T EF +L L HP SR+ Sbjct: 121 RILASVKP-EQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREA 179 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L G E ++ V I+R+R +EEDPAHPRY++T+ G GY F Sbjct: 180 LFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 309 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 94/233 (40%), Positives = 134/233 (57%), Gaps = 8/233 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + ILV+DD+ +LR LL YL +GF V N + + L++LD+M+P Sbjct: 1 MAQT--ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPE 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 GL R ++ PII++TAK E+ D+I+GLE+GADDYI KPFN RE++AR+RAVL Sbjct: 59 LGGLDFMRAWNKEA-ETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVL 117 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P A V+ G+ L + ++ + LT EF +L L++ P Sbjct: 118 RRSYKAQPQA-----DVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVF 172 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SR L++ G+ Y ER+IDV I LR +E DP +PRYI+TV+G+GY F Sbjct: 173 SRLDLLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 6/237 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ K+L+++DD + L++ Y+ + G+ S ++ E+ L ES ++LD+MLP Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +G +C+ +R + +PIIM+T KGE D I GL IGADDYI KPF+P EL+AR++ VL Sbjct: 61 LNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR E+ + F +++ + +E + + E + L +P++ L Sbjct: 121 RRTILS-----ESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVL 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +R +L++ G E++ R++DV I R+R + E A I T+ G+GY F + + Sbjct: 176 TRQQLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFEENSN 231 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 106/237 (44%), Positives = 153/237 (64%), Gaps = 3/237 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ N IL+VDDD +R LL YL + G + AN QM +L + S L+VLDLMLPG Sbjct: 1 MENNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPG 60 Query: 61 EDGLSICRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 EDGL++CR LR+ + +P++M+TA+ EE DRI+GLE+GADDY+ KPF REL ARIR+V Sbjct: 61 EDGLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSV 120 Query: 120 LRRQANELPG-APSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPR 177 LRR S+ + FG +KL+ R + + + L+ E+ +L+ + HP+ Sbjct: 121 LRRARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQ 180 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+RD+L+NL +GR+ +RSID+ ISRLR+ +++D PRYI+T+ GYVF Sbjct: 181 RVLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSA 237 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 150/234 (64%), Gaps = 4/234 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESF-HLMVLDLMLPGED 62 ++IL++DDD L+ALL Y E +V + + + ++VLD+MLP D Sbjct: 2 THRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDID 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +++R+ S +P+IM+TA+ ++ DRI+GLE+GADDY+ KPFNPRELLARI+AVLRR Sbjct: 62 GFETLKKIRAISQ-VPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR 120 Query: 123 QANELPGAPSQEEAV--IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 AP + + FG +++ R + + + +T E +L AL+SH PL Sbjct: 121 ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +RD+L++LA GR++ +RSIDV ISR+R+ +E+DP+ PRYI+TVWG GY++ Sbjct: 181 TRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 132/227 (58%), Gaps = 4/227 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILV +D+ +R+ + L GF V N + RE F +++LD+M+P DG Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 C +R + IIM+TA+ E D+I GL GADDYI KPF+P EL+ARI+A+LRR Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRR--- 119 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + ++ + G F ++L +++ + + + LT E+ ++ LV + LSRD L Sbjct: 120 -VEKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDAL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ G Y +++DV I RLR+ +E+DP+HP YI+T+WG GY + Sbjct: 179 LDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 97/231 (41%), Positives = 148/231 (64%), Gaps = 4/231 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N+ ILVV+DD R L YL ++G++V V + + M ++ ++++ L++LD+ LPG DG Sbjct: 3 NHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L + R +R QS + +IMVT K +EVDRIV LE+GADDY+ KPFN RELLAR + +LRR Sbjct: 63 LQLLREIRHQS-EVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSR 182 + S++E +F + L++ R +F + + LT GEF +L S P ++R Sbjct: 122 LSAREA--SEDENQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTR 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D L++ R+++ +R++DV + RLRR +E DP PR+I TV G+GYVF Sbjct: 180 DNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 1 MQENYK-ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M N + LVV+DD + L+ L + F V + ++ + + ++L++LDLMLP Sbjct: 1 MATNARQALVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLP 60 Query: 60 GEDGLSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 DG ICRRLR + + PIIM+TAK EE D+++GL++GADDY+ KPF PRE LAR+ Sbjct: 61 TLDGWEICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVH 120 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 A+LRR + +Q + + F + + + F E + + LT EF +L L + Sbjct: 121 ALLRRTTDY-----NQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAG 175 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L R++L+ G EY R+ID I RLR+ + + ++QTVWG+GY Sbjct: 176 RTLKREQLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKL 230 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 141/232 (60%), Gaps = 7/232 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + ILVVDDD + LL +L F V++ +AE+ + + MVLD+M+PG Sbjct: 1 MSGDNTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 ++G +CRR+R++S P+PI+ ++A+ ++VD+I GL +G DDYI K +P E++AR++AVL Sbjct: 61 QNGFELCRRIRAES-PVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A P EE V+ +G+ +LNL TRE+ + + LT EF +L+ HPR Sbjct: 120 RRSATRRPM----EERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + D+L+ + +I V +SRLR +E DP P+++ VWG+GY F Sbjct: 176 TYDQLLAKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRF 225 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+V+DD L L GFQV + ++ + R L++LD+MLPG DG S Sbjct: 3 TILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFS 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR + ++ +PI+++TA +E RI GLE+GA DY+ KPF+ ELLAR+RA+LR Sbjct: 63 VCRAVAKET-TVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + V+ G +L+ +R ++ +D + L+ EF +L L+ + LSRD L Sbjct: 122 QRQ---TPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G ++ R+IDV + LR +E DPA+P I+TV G+GY F Sbjct: 179 LERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 5/234 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQ-VRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 EN IL+VDD+ + +++R L ++G++ + A+AE+ ++ L+VLD+M+ G Sbjct: 2 ENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGM 61 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G C +R S+ PI +TA+ + D++ G +GADDYI KPFNP EL ARIRA L+ Sbjct: 62 SGFEACTLIREYSDA-PIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + +Q + F + E+ E + ++ +L+ HP LS Sbjct: 121 RTYQSKETSSNQ---TYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLS 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +D++ G ++ V I +LR +E DP++P YI TV GLGY F+P+ Sbjct: 178 KDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 231 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 140/227 (61%), Gaps = 6/227 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 YKILVV+DD +++ L L + + + E RE+F L++LDL LP +DG Sbjct: 2 YKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 S+ + ++++ +P+I++TA+GEE+D+I G +G DDY+ KPF+P EL+ RI+AVLRR Sbjct: 62 SVLKEIKNR-EDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 EE ++ +GK +NL TRE+ + EP+ LTS E+A+L+ L +P ++++ Sbjct: 121 K-----GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQ 175 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +M+ + + V + RLR +EEDP+ PR I+TVWG+GY Sbjct: 176 IMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 132/230 (57%), Gaps = 7/230 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + ++LVV+DD + + YL GF V + + R L+VLD MLPG DG Sbjct: 39 DRRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDG 98 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +CRR+RS+ + +PII++TA G +RI GLE GADDYI KPF+PREL+ R++++LRR Sbjct: 99 SEVCRRIRSRGD-VPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRS 157 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 +L EA G+F L+ + R E + LT+ EF +L L+ HP + SR+ Sbjct: 158 IGDL-----TPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSRE 212 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +L+ G E+ ++ V + RLR +E DP HP + TVWG+GY Sbjct: 213 QLLKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 7/232 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+++DD + L+ +G+ V++ + + +L L+VLDLMLP Sbjct: 1 MIHAETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +G ICR LR + MPIIM+TAKG+E D ++GL++GADDY+ KPF+ +ELLAR+ A L Sbjct: 61 VNGYEICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQ Q V FG + + R + R + +PL+ EF +L LV++ L Sbjct: 121 RRQRK-------QTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRAL 173 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SRD++M+ G + RSID ++ LR +E DPA PR ++TV GY F Sbjct: 174 SRDRIMSTVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKF 225 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 136/233 (58%), Gaps = 5/233 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ +IL+V+D+ L ++ LT F+V A+ Q + LL + L++LD MLP Sbjct: 17 MEGAVQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPD 76 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL +C++LR+ MP++++TA+ E D ++GLE GADDY+ KPF+ EL AR +A+L Sbjct: 77 GDGLLLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALL 136 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + P +I F +++L +RE+ D P+ LT+ EF +L L HP++ Sbjct: 137 RRHLSAAPT-----RQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVF 191 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SR +L++ G + E +++ I+RLR + P +QTVWG+GY F Sbjct: 192 SRTQLLDAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFT 244 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 133/230 (57%), Gaps = 7/230 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ILVVDD+ +R + + YL G++V + ++ E L+VLDLMLPG DG Sbjct: 2 QPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + I RLR +S+ I+M+TA+ +E+DR+ GL +GADDY+ KPF+PREL+AR+ A+LRR+ Sbjct: 62 MEITARLREKSDVF-ILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRR 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + +V+ F +++ RE + + LT EF +L AL + LSR+ Sbjct: 121 RG-----KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSRE 175 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L+ G ++ +R +DV +S++RR +E I+T G+GY FV Sbjct: 176 DLIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 135/234 (57%), Gaps = 5/234 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M N IL+ DDD R+ ++ L ++G++V + + EQ +L T ++++D+M+P Sbjct: 1 MN-NGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPK 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL ++++ + + +PII+++AK + VD+IVG ++G DDY KPF+P EL R++AVL Sbjct: 60 LDGLEASQKIKMKVD-VPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + V+ + F + TR + + + LT+ EF +L + SHP + Sbjct: 119 RRSKAVPE---KKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR +L+ + E ++ V I RLRR +E D A P I+TVWG+GY F Sbjct: 176 SRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEA 229 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 149/246 (60%), Gaps = 14/246 (5%) Query: 1 MQEN----YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL--TRESFHLMVL 54 M++N +L+++DD L L+ YL ++V+ A + L +S L++L Sbjct: 1 MEDNNSGTKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVIL 60 Query: 55 DLMLPGEDGLSICRRLRSQSN----PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPR 110 DLMLP DG+ +C+R+R + IIM+TAKG+ DR++GLE+GADDY+ KPF PR Sbjct: 61 DLMLPDMDGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPR 120 Query: 111 ELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLK 170 ELLARIRAV+RR L Q+E + FG+ K+ + E+ +DEP+ LT+ +F +L Sbjct: 121 ELLARIRAVMRRHDLPL---HQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLH 177 Query: 171 ALVSHPREPLSRDKLMNLARGRE-YSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLG 229 +H + LSR++L + + ++R+IDV ISRLR ++E++P P+ I TV G+G Sbjct: 178 YFATHSGKVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVG 237 Query: 230 YVFVPD 235 Y F D Sbjct: 238 YQFATD 243 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 145/233 (62%), Gaps = 3/233 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 ++E+ +L+VDDD +R LL +L +G +V + E+M +++R + L++LD+MLPG Sbjct: 77 LKEDAHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPG 136 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 + G+ IC+ +R S +PIIM+TA + D+I+GLEIGADDY+ KPF+PRELLARIRAVL Sbjct: 137 KSGIEICQDIRRHSR-VPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVL 195 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREP 179 RR N + + F + L+ R + D + LT+ EF +L+A V + Sbjct: 196 RRLENNRAPSRPVTHS-YRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHI 254 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 LSRD+LM +A + +RS+D+ ISRLRR + +D P+ I T+ GY F Sbjct: 255 LSRDQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQF 307 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 142/238 (59%), Gaps = 4/238 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E ++L+V+DD + + E YL GF + ++ LL +ESF L++LDLMLPG Sbjct: 1 MAEKRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 + G ICR +R Q + +PI+MVTA+ E VD+I GL +GADDYI KPF+P EL+AR+ A L Sbjct: 61 KSGYDICREIREQVD-IPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANL 119 Query: 121 R---RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 R R ++P ++E I ++ + + ++++ + + + EF +LK L +P Sbjct: 120 RQYDRMMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPN 179 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 SR++L G +Y ++ V I+R+R +E+D +P+ ++TVWG GY F D Sbjct: 180 IVFSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 145/233 (62%), Gaps = 2/233 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KILV+DD++ +R L E L +GFQV++ N + L L++LDLMLP G Sbjct: 2 KKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGY 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C+ + QSN +P+IMV+AK E +D+++GLE+GA+DYI KPF+ REL+ARI+ VLRR Sbjct: 62 DLCKEIVKQSN-IPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A + + G+ ++N T+ + + + LT+ E+ +L+ L P++ +RD+ Sbjct: 121 -HNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDE 179 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 L+ + G +YS RS+D+ I RLR+ +EED P+Y++T++G GY D + Sbjct: 180 LLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDST 232 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 143/228 (62%), Gaps = 5/228 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+++D++ +R L+ L +G++V + A+ E+ + + E L++LD+M+P DG Sbjct: 2 ARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++C LR +NP+PI+M+TAKG+ DR+ GL+ GADDY+ KPF+ ELLAR+RA+LRR Sbjct: 62 ALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQ 121 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 E A + FG+ ++++ + R + + T+ E+A+L+ L P EP+SR++ Sbjct: 122 REKRAV-----ATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRER 176 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +++ G R++D I+ LR +E DP PR+I+TV G+GY Sbjct: 177 FLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 2/228 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N IL+VDD+ +R LLE L +G+ V E+ ++L +E HLMVLD+M+P DG Sbjct: 2 NNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C ++R + N +PI+M++AKGE++D+I G+ GADDY+ KPFN EL RIRA+ RR Sbjct: 62 FEVCSKVRERYN-IPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRT 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 L + +I ++ ++ + + LT+ EF +L L ++ S + Sbjct: 121 Y-FLNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAE 179 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 ++ +Y ++ V +SRLR +E+ + I TVWG+GY Sbjct: 180 EIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYK 227 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 130/233 (55%), Gaps = 8/233 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVV+DD L +L + L +G+ V + L L++LDLMLP Sbjct: 1 MNNP--ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPR 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 GL +C+RLRS++ PIIM+TA+G + D++ GL +GADDY+ KPFN ELLARI AVL Sbjct: 59 MSGLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P ++ G +++ + + + + L+S EF VL+ L + + Sbjct: 119 RRTHQSKPSQH------VSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTV 172 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 R+K+ G + + R+ID I+RLR +E++P PRYI TV G GY FV Sbjct: 173 DREKIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 139/230 (60%), Gaps = 5/230 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLT---RESFHLMVLDLMLPGEDG 63 I+VV+D+ L L+ER L E+G +V + + LT + L+VLDLMLP DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L ICRR+R QS PI+M+TA+ E+DR++GLE+GADDY+ KPF+ REL AR+ A+LRR Sbjct: 64 LEICRRVR-QSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 124 ANELPGAPSQE-EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + +++ I G ++ +RE+ +P+ LT+ EF +L L ++P SR Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 D L++ G +Y ++R++D I RLR+ + + I T+WG+GY + Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKY 232 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 138/233 (59%), Gaps = 8/233 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I V++DD + LL ++GF VRS N + + +E ++VLDLM+P DGL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 67 CRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 C+ +RS +P+IM+TAK E+D+IVGLE+GADDY+ KPF+ RELLAR++A+LRR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + E FG K++ E+ + +P+ LT+ +F +L ALV+ + LSRD Sbjct: 124 SLHFPTAKPE---YKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 ++ + +R+IDV I +LR +++E + I+T+ G+GY + + + Sbjct: 181 IIEHVWAWDKDVYDRTIDVHIKKLRELLKE---YGNCIKTIRGVGYKWECEPT 230 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 9/237 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +Y ILVV+D+ + +E YL QG+ V N + +++ + HL ++D+M+P Sbjct: 1 MN-SYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPK 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+++ RLR N P+IM++AK EEVD+I+GL IGADDY+ KPF P ELLAR+ + L Sbjct: 60 MDGITLTMRLRENYN-FPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQL 118 Query: 121 RRQANEL------PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVS 174 RR L +++V A G +LN T+E+ + + + T EF +L L+ Sbjct: 119 RRYTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMR 178 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + S D++ + ++ V + +R +E DP +P+Y++ VWG+GY Sbjct: 179 NAGRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYK 234 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 102/237 (43%), Positives = 153/237 (64%), Gaps = 3/237 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +L+VDDD + +LL + + V N M L +E+ L++LD+ML GEDG Sbjct: 2 PHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 S+C+++R+ S +P+IM+TA + DR+VGLEIGADDY+ KPF+ RELLAR++AVLRR A Sbjct: 62 SLCQKMRAVSR-VPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 125 N-ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEP-MPLTSGEFAVLKALVSHPREPLSR 182 E PS+ ++ F ++L++ RE+ D + L+ GEF +L A H + L+R Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTR 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 D+L++LARG ++A +RSIDVQ+SRLR +E+DP P I+TV GY+F P ++ Sbjct: 181 DQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTPVVTRG 237 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 2/227 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL++DD+ + LL+ L +G V + N ++ E L+VLD+M+P DG Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDGYE 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR++R + PI+ ++AK E+DRI G +G DDY+ KPF+ +ELLARI A LRR+ Sbjct: 62 VCRKIR-DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + A++ F ++L +RE+ + P+ LT EF VL+ L HP + S++++ Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 G + ++ I +R +E YI+TVWG+GY + Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKW 227 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 139/225 (61%), Gaps = 2/225 (0%) Query: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 ++V+DD + +++ YLT++GF + + E+ RL + S+ L++LD+MLP +G+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 68 RRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANEL 127 + +R +SN +P++M++AK +VD+ +GL GADDYI KPF+ EL AR++A +RR Sbjct: 61 KIIREKSN-IPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 128 PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMN 187 P+ + VI + +++ + + EP+ LTS E+ +L S+P++ +++++ Sbjct: 120 AEEPAVNK-VIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYR 178 Query: 188 LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 EY + I+V + RLR +E+DP+ P+YI+T+WG+GY Sbjct: 179 SVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 142/237 (59%), Gaps = 4/237 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ ++ ILV DD+ ++ +L YL + GF V V N ++ R L L++LDLMLP Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C +R++S +PI+M+TAK + DR+ GL+IGADDY+ KPFNP E++AR++A+L Sbjct: 61 IPGEEVCMAVRARS-AVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAIL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + P A E G ++ ++ +++ LT+ E+ +L L HPR Sbjct: 120 RRTMLDHPLADRLE---YRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVF 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 SR++L+ G ++ R+ID + LR +E+DP P YIQTV+G+GY F DG+ Sbjct: 177 SREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDGN 233 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 140/228 (61%), Gaps = 3/228 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 + +VV+D++ L A++ YL G++V + + L +++LDL LPG DG+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR+ S+ ++M+TA+ +EVD ++GL +GADDY+ KPF+PRELLAR++A+LRR Sbjct: 125 VCRRLRTFSDCY-VVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRP 183 Query: 126 EL--PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + ++ FG +++ RE++ DE +PLT EF +L L PR SR Sbjct: 184 KTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRR 243 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +L++ G ++ E +DV I LRR +++D + +Y++TV G+GY Sbjct: 244 QLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYR 291 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 129/230 (56%), Gaps = 5/230 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+++DD R+RA + LT+ G +V + L ++++DLMLP DG Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 CRRLR +S+ +PIIMVTA+ + D + GLE GADDY+ KPF +EL ARIRA+LRR Sbjct: 79 ECCRRLR-RSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSR 137 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + A VI ++ + R E + LT EF +L L S P SR++ Sbjct: 138 S----AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQ 193 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+ G +Y R +DV + RLR +EEDPAHPR + TV GLGY P Sbjct: 194 LLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 143/235 (60%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+VDDD + LL YL+ F+V + +A+ M L R + +L+VLD+MLPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL++ R +R +S +P+IM+TA+ DRI+GLE GADDY+ KPF PREL+ARI VL Sbjct: 89 TDGLTLSREIRERSQ-IPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVL 147 Query: 121 RRQANELPGAPS-QEEAVIAFGKFKLNLGTREMFRE-DEPMPLTSGEFAVLKALVSHPRE 178 RR AP+ V+ F ++L+ R + + L++ EF +L + PR Sbjct: 148 RRSQGAKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRR 207 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SRD+LM ARGR A ERSID+ +SRLR+ + +DP P I+TV G GY+F Sbjct: 208 LFSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMFN 262 >UniRef50_Q398T9 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q398T9_BURS3 Length = 395 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 116/234 (49%), Positives = 174/234 (74%), Gaps = 1/234 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+++ +I+V+DD+ LR +L+R+LT GFQVR+VA+ +++DRLL RE + L+VLDLM+ Sbjct: 159 MEQSCRIVVLDDEAELRNMLQRFLTGHGFQVRAVADGKRLDRLLQREPYDLLVLDLMMEP 218 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CRRLR++ +PI+M+TAKG+ D++VGLE GADDY+ KPF P EL+AR+RA+L Sbjct: 219 EDGLSVCRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALL 278 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQ G P+ + FG F ++G + + R+ P+ + S + +L AL S P + Sbjct: 279 RRQ-KMAAGEPTVTSQRLRFGAFTFDVGQQTLMRDGTPVEIHSAQMLLLHALGSSPNRAV 337 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR+ L+ ARGR+++A++RS+DVQI RLR++VE+DP PR+I+TVWG+GY+ V Sbjct: 338 SRENLLARARGRDHAALDRSVDVQILRLRQIVEDDPGKPRFIKTVWGIGYMLVA 391 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 94/230 (40%), Positives = 134/230 (58%), Gaps = 8/230 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 N ILVV+D+++L +E L +G+ V V + + L++LD MLPG Sbjct: 2 SNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGIS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL IC+RLR + +PII++TAK + DR+ GL+ GADDYI KPFN ELLAR+RA LRR Sbjct: 62 GLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 E P ++ F LN TRE+FR + LT+ EF +L+ L+SHP++ LSR Sbjct: 122 NHEEDP-------DLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSR 174 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 D+++ G ++ I+V + LR +E + R IQTV G+GYV Sbjct: 175 DQILERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYVL 223 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 143/229 (62%), Gaps = 4/229 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL++DDD L L+ R+L+ +GF V + L ++ F L V+D+M+PG++G+ + Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R LR QS+ +P+IM+TA+GEE+DRI+GLE+GADDY+PKP NPREL ARIRAVLRR + Sbjct: 63 LRELR-QSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQ 121 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 QE FG + + +R + EP+ LT+ E+ +L L+ H E +S+ +L Sbjct: 122 QESDDKQET---RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELS 178 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 A G+ + +R++DV I LR+ + I+TV +G++FVP+ Sbjct: 179 QAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 2/230 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ++K+LV++D+ L LL LT++G+ + + + + +F L++LD+MLPG +G Sbjct: 2 SHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 I RLR PII++TA+ E + + GL+ GADDYI KPF ELLAR+ AVLRR Sbjct: 62 FEILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + E VI G + E+ E +PL EF VL LV P ++RD Sbjct: 122 QQDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRD 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 LMN+ G +Y +R++DV +S LR+ +E I+++ G+GY V Sbjct: 182 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKLV 229 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 111/240 (46%), Positives = 146/240 (60%), Gaps = 2/240 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVVDDD +R LL R+L Q F+V +V +A + R + L+VLDLMLPG Sbjct: 24 MDIMPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPG 83 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 E G+ R LR +S +PIIM+TA GEE DRI+GLE+GADDY+ KPFNPREL+ARIRAVL Sbjct: 84 ESGIDFARWLRGESQ-VPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVL 142 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREP 179 RR + F + L R + +PLT GE+ +L AL+ P Sbjct: 143 RRVGENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRV 202 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 L+RD L++L RGR+ +R+IDV ISRLRR +E+D H + I+TV G GYV ++ Sbjct: 203 LTRDMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLAVPVERS 262 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 141/228 (61%), Gaps = 3/228 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 I +V+DD L L+ YL F V+ +A + + R+ L++LDLMLPG DGL Sbjct: 48 PNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGL 107 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR LR +S +PI+M+TA+ + D+++GLE+GADDY+ KP PR LLAR+R +LRR + Sbjct: 108 QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 167 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 P + +I G +++L R + E + L+SGE+ +L L + E ++RD+ Sbjct: 168 ---VNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDR 224 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ RG E++ +RS+DV IS+LRR +++ R I+TVWG GY+F Sbjct: 225 ILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 126/235 (53%), Gaps = 9/235 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +LVV+D+ L LL+ L ++G+ V + E + L+++D MLP G Sbjct: 2 KAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSG 61 Query: 64 LSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 + +CRRLR ++ +PIIM+TA+GEE DR+ GL+ GADDY+ KPF+ EL ARIRAVLR Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R P E VI G ++ + R D + L EF +L L+ HP S Sbjct: 122 RIR------PGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFS 175 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 R++L++ G + R++DV + RLR+ + + I+TV GY F + Sbjct: 176 REQLLDAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAFDVNA 229 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 134/241 (55%), Gaps = 14/241 (5%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR-ESFHLMVLDLMLPGED 62 IL+VDD++ + LLE L +GF V S + E LL++ E +L++LD+M+P Sbjct: 2 KDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +C ++R + + +PI+ ++AKG+ VD++VG EIGADDYI KPF+ ELLARIRA LRR Sbjct: 62 GYELCSQIRREWD-LPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 123 QANELPGAPSQEE--------AVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVS 174 Q E V+ F +++ T ++ ++ + L++ EF +L L Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + +R+++ + G Y ++ V I LR +E ++I+T WG GYVF+ Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIG 236 Query: 235 D 235 + Sbjct: 237 E 237 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 3/239 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLP 59 M + I VVDDD +R LL+ YL + F V + + E E L++LD+MLP Sbjct: 1 MTQAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G+DG ++CR LR+QS +P+IM+TA +E+DRI+GLEIGADDY+ KPFNPRELLARI+A+ Sbjct: 61 GQDGFAVCRSLRTQSQ-VPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAI 119 Query: 120 LRRQA-NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 LRR E+ F +F L+ +RE++ +DE L+ ++ +L ++HP Sbjct: 120 LRRMEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGA 179 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 L+R+ + RGR+ + ++R IDV +SRLR+ + ED P+ I+T+ G GY+ Sbjct: 180 VLTRELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASVE 238 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 3/233 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 KIL+VDD+ + +L L ++ F + + N + L+ F +++LD+MLP Sbjct: 15 RTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDI 74 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG +CR++R+ +N PI+ VTA+ ++D++ GL IG DDYI KPFNP E+ ARI LR Sbjct: 75 DGFELCRQIRNYTN-TPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLR 133 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 RQ ++ + F F L + +EP+ T+ E +L L +HP + Sbjct: 134 RQHMTQEPNNGEKLN-LHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFT 192 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 ++L G ++++ + IS+LR+ +EE+P P YI + G+GY F+P Sbjct: 193 AEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIP 245 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 131/229 (57%), Gaps = 9/229 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVV+D+ +R ++ L + GFQ + + L L++LD MLPG G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 66 ICRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + L+ +S +P++M+TA+GEE DR+ GLE GADDYI KPF+P+EL+ARI+AV+RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 +P E VI L+ + + +EP+ + EF +L ++HP SR+ Sbjct: 124 ------SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L+N G +R++DV I RLR+ +E H R +QTV G GY F Sbjct: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 3/238 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ++LV++D+ L LL LT +G++V + + R+ F L++LDLMLPG +G Sbjct: 2 TQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 I +LRS+ P+I++TAK E + + GL+ GADDYI KPF ELLAR+ AVLRR Sbjct: 62 FEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRS 121 Query: 124 AN--ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 E Q+ + I G + E+ EP+ L EF VL L P ++ Sbjct: 122 TGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMT 181 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 RD LMN G +Y +R++DV +S LR+ +E DP +I ++ G+GY V + +A Sbjct: 182 RDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-QSVHIDSIRGVGYKLVVNKKQA 238 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 132/234 (56%), Gaps = 4/234 (1%) Query: 1 MQEN--YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML 58 M+ N IL++DD+ ++R LL YL GF N + + L++ D+M+ Sbjct: 6 MEGNTIKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMM 65 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 P DG + +++R S +P + ++AK +++D+I+GL++GADDY+ KPFNP E+++R++A Sbjct: 66 PMMDGYELLKKIRHIS-EVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQA 124 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 + RR G Q +I G L+L + ++++ + +TS EF +L L+ H Sbjct: 125 LFRRMDVFSKGEK-QNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGR 183 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ + G+EY E I V IS+LR +E++P P Y+ T+ GLGY F Sbjct: 184 VFTKASIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 130/232 (56%), Gaps = 3/232 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M KIL+ DD+ + + YL S + ++ E L++LDLM+P Sbjct: 1 MSSIKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C+ +R SN +PIIM+TAKGEE+DRIVGLEIGADDYI KPF+PRE++ RI+ + Sbjct: 61 IFGTEVCKEIRKISN-VPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIF 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR N + ++ F F ++L E+ E + +T E +L L ++ L Sbjct: 120 RRVGNANIDTNLNRK-LVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVL 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SR+++++ G +Y R +D QI R+R+ + E+ I+TV+G+GY F Sbjct: 179 SREEILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKF 229 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 134/236 (56%), Gaps = 3/236 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 ++LVVDD+ +R LL YLT +GF+V+ N + + F +++LDLMLP D Sbjct: 12 PKLQVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMD 71 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +C+++R + + + I+M+TA+ E D++ GL IGADDY+ KPF P ELLAR+ +++RR Sbjct: 72 GWQVCKKIREK-DHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRR 130 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 A + + ++EA + F ++ RE+ D + T EF + +L + SR Sbjct: 131 SA--ITQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSR 188 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 ++L+NL G EY R +D I +R ++ IQTVWG+GY F G+ Sbjct: 189 EELVNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNGAGTS 244 >UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNC3_CLOBO Length = 231 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 146/232 (62%), Gaps = 4/232 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +K+LV++D++ + ++ L +Q F+V + E + +T E+ +++LD+MLPG Sbjct: 1 MNHKHKVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C LR + IIM+TA G++VD+I GLE GADDY+ KPFNP EL AR+ +++ Sbjct: 61 IDGFKVCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLI 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + ++ FK++L ++ ++ +E + LT EF +LK + + L Sbjct: 121 RR----MSFSNDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISL 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SRDKL++LA G + + +DV I RLR +E+DP++P+Y+QTVWG GY++ Sbjct: 177 SRDKLLDLAWGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGYIW 228 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 135/229 (58%), Gaps = 10/229 (4%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N +L+V+D++R+R L+ Y ++GF V ++ E+ R+ + L +LD+M+P DG Sbjct: 2 NKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L++CR +R SN PII++TAK +E D+++G E+GADDY+ KPF+P+ LLA+ +A+LRR Sbjct: 62 LAVCRNIREVSN-TPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 ++ ++ F +N + E+ E + L+ E+ +L L S+ LSRD Sbjct: 121 GTL------NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRD 174 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++++ G +Y R++D I RLR + + YI TV G GY F Sbjct: 175 RILDNVWGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKF 220 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 302 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 132/229 (57%), Gaps = 4/229 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +IL+ +DD L L L +G+ V S + + +S+ L++LD+MLP G Sbjct: 2 TPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C++LR +PI+M+TA+GE VD++VGL+ GADDY+ KPF ELLARI A+LRR Sbjct: 62 FDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRA 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P S G ++ E+ R +P+ L++ E+ +L L+ H E ++R+ Sbjct: 122 ----PVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTRE 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ G + R++DV ++ LR+ +EE+P +PRY+QTV GLGY Sbjct: 178 DLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 141/229 (61%), Gaps = 4/229 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + KIL+VDD+ +R L+ +L++QG+ + N ++ + + SF L++LD+M+P DG Sbjct: 2 DTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C +R ++ +PI+M+TA+ E D++ GL+IGADDY+ KPF P EL+AR+ A+LRR Sbjct: 62 WEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRA 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 Q + F + K+++ ++F +D P+ LT EF +LK L+ +P++ +RD Sbjct: 122 VVNQTTQTKQ----LHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRD 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L+ G ++ ER++D I +R ++++ I+TVWG+GY Sbjct: 178 QLLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 134/233 (57%), Gaps = 7/233 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + K+L++DD+ L L + ++GF V + E+ R+ SF ++LDLMLP D Sbjct: 15 KTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKID 74 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+++C R+R QS+ IIM+TAK ++D+I+GLE+GADDY+ KPFN REL+AR+R ++RR Sbjct: 75 GITLCNRIRQQSDVF-IIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Q ++ F +++G+R + R +E + LT EF +L L+ + R Sbjct: 134 QEK-----GEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGR 188 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +++ L G R+IDV + LR +++ I+T WG+GY F D Sbjct: 189 EEIFQLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 97/232 (41%), Positives = 145/232 (62%), Gaps = 4/232 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+DD +L L+ +LT +GF V+ + + + + S L++LD+MLPG+DG Sbjct: 9 KKILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDGF 68 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR LR + N P++M+TAK + D+++GLEIGADDY+ KP PR LLAR+ A+LRR Sbjct: 69 GVCRDLRPEFNG-PVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGD 127 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 S+E+ I G +N +R++ +DE + LTS EF +L L E +RD Sbjct: 128 LPNQ---SEEKGEITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQNRDY 184 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 + GREY ++RS+DV+ISRLR+ + + P I+T+WG GY+FVPD Sbjct: 185 IYKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDA 236 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 8/231 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +L+V+D+ +R ++ YL E G++VR +N ++ L++LD+M+PG DGL Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 RR R+ + +P+I +TA+ E+D+++GLE+GADDY+ KPF+ ELLAR+RA LRR + Sbjct: 83 EFLRRFRA-TEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 LP A V+ G+ +L+ TR E + LT EF ++ A + P +R + Sbjct: 142 EPLPNA------VLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLE 195 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + E ER+IDV + LR +E +P PR I+TV+G+GY PD Sbjct: 196 -LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 147/234 (62%), Gaps = 4/234 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+L+ DDD RL L++ Y +G++V N + L+ + +++LD+M+P DG Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +++R++S+ +P+IM+TAKG+++DRI+GLE+GADDY+ KPFNPRELLARI+A+LRR + Sbjct: 63 TLKQIRNKSS-VPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQ 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E P+ + I L R ++ E E + LT+ E+ +L+ ++ P + L++ +L Sbjct: 122 EREDDPTAD---IDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQEL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 A GR+ + +RS+D+ IS LR+ + I+TV G+GY+FV + A Sbjct: 179 SEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSNEQGA 232 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 141/234 (60%), Gaps = 7/234 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M++ +IL+VDD+ L L++R L ++GF ++R+ + + HL +LD+MLP Sbjct: 1 MEQP-RILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLP 59 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +G +C+++R+QSN +PI+ ++AK EEVD+++GL IG DDYI KPF+P+E+ R++A Sbjct: 60 DGEGYQLCQQMRAQSN-IPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQ 118 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR + + AP E + G F++N E++ E + LT+ E +L + +P Sbjct: 119 LRRVS--MMEAPVAETTTV--GPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRI 174 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 LS++ L G + + ++ V I RLR VE +P+ P YI+TV GLGY Sbjct: 175 LSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLT 228 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KI VVDD++++ +++ YL G+ V N L + + L++LDLMLP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 IC LR +S +PIIM+T K +E D + GL+IGADDY+ KPF+PR+L+AR++A+LRR Sbjct: 70 DICEMLRKRS-KVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTE 128 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 +EL S + +N E+ + + LT E+ +L ++ +P + +R++ Sbjct: 129 DELGEKNSLFS--LNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREE 186 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ + G+ + +R+ID I LR +E++P P YI T+ G+GY F Sbjct: 187 LIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 7/235 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQ-VRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 KIL+VDD+ + LLE L ++GF+ + + + + + L++LD+MLP D Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G S+C ++R Q +PI ++AK E++D+I+GL IG DDYI KPF+P+E+ +++A RR Sbjct: 70 GYSVCEQIR-QFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRR 128 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + FG ++ + R + LT+ EF +L L+ +P + S+ Sbjct: 129 NQY-----KEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSK 183 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +L G Y + + V + LR +E++P+ P Y+ TV GLGY G Sbjct: 184 ARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKGD 238 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 138/264 (52%), Gaps = 39/264 (14%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+D+ + L++ YL+++GF+ + + L++LDLM+PG DGL + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 67 CRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 C R+R Q+ I+M+TA+GEE+DRI+GL GADDYI KPF+PREL+AR+RAVLRR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTR---------------------------------E 151 Q F ++L R + Sbjct: 123 R----GSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQ 178 Query: 152 MFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRM 211 + P+ LT EF +L +S+P +R +L++ G ++ ER +D I+RLR+ Sbjct: 179 LEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKK 238 Query: 212 VEEDPAHPRYIQTVWGLGYVFVPD 235 +E DP+ P +++TV G+GY F + Sbjct: 239 IEPDPSAPTFVKTVVGVGYRFEDE 262 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 132/229 (57%), Gaps = 7/229 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ILV+DDD LR + L ++GF+ + L+++DL LPG G Sbjct: 14 TILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGTE 73 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC++LR+ PII+++A +E+D+++ LEIGADDY+ KPF REL ARIRAVLRR Sbjct: 74 ICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRR--- 130 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 A + V+ F + +++ R + R+ E + LT E+ +L + +P PL+RD + Sbjct: 131 ----ASTDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMI 186 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +N G E+ R++D + +LR+ +E DP P++ TV G+GY F+P Sbjct: 187 LNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFIP 235 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 4/233 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + IL+VDD+ + + L + G+QV + N + + + + L VLD+M+PG Sbjct: 3 DQPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGM 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 +G +CR LR+++N P++ ++A+ E+D++VGLEIGADDY+ KPF REL+AR+RA+LR Sbjct: 63 NGYELCRNLRTRTNA-PVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + + I G L+ + + LT EF +L AL+ + S Sbjct: 122 RGQMDAEPMAGES---ITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVAS 178 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R+ L+ A G EY +++D I RLR + P I+TV G GY F Sbjct: 179 REDLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 141/238 (59%), Gaps = 3/238 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E K+L+VDD+ ++ +++ YL ++G V + Q + R + L+VLDLMLP Sbjct: 1 MLEEKKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G IC +R +S +PIIM+TAK +E I GL +GADDYI KPF+PREL+ARI A+ Sbjct: 61 MTGEEICSIVRKRSR-VPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIF 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR E+ P E +++ +E+ + E + LTS ++ +L L+ +P + Sbjct: 120 RRLNEEV--VPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTF 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +R++L++ A G +Y +R++D + +R+ +E +P P+YI TV G GY F + ++ Sbjct: 178 TREELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFNE 235 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 133/228 (58%), Gaps = 13/228 (5%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+VDD+ ++R +L YL ++G++V + E+ +L + F L++LD+MLP +DG Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 SI R + + P+IM+TA+ + D + G E+GADDYI KPFN + LLAR++++LR+ Sbjct: 67 SILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 N + E++I G +N + + + L E+ +L L+ + + LSR+K Sbjct: 126 NMV-------ESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREK 178 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+N G ++ +R+ID I LR+ + ++ I+T+ G+GY Sbjct: 179 LLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 2/228 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+DD+ + L + YL F+V+ + + + L++LD+MLP DG Sbjct: 2 KKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 I R + + +P++MV+AK EE+D+I GL +GADDYI KPF+P EL+AR+++ ++ Sbjct: 62 DILRII-HDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 125 N-ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + VI+ ++N +R++ D+ + L EF +L + +P +D Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKD 180 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +L G + ++ V I R+R +E +P+ P+YI+TVWG+GY Sbjct: 181 ELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYR 228 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 149/249 (59%), Gaps = 11/249 (4%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ + I V+DD++ + LL YL GF+V + N + L+ + L++LDL LPG Sbjct: 1 MKSAFHIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDG SI RR+R +++VT +G+ VD++VGLE+GADDY+ KPF+ REL+AR++AVL Sbjct: 61 EDGFSIARRMRENWR-CGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVL 119 Query: 121 RRQANELPGAPSQEEAV---------IAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLK 170 RR A + + + F ++L+L R + + + + LT GEF +L Sbjct: 120 RRLAPDDAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLC 179 Query: 171 ALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 A HP LSRD L+ RGRE S +R+IDVQ+ RLR+ +E DP P+ +++V G GY Sbjct: 180 AFARHPGRVLSRDFLLEQTRGREASPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGY 239 Query: 231 VFVPDGSKA 239 + VP ++ Sbjct: 240 ILVPPVTQG 248 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 148/237 (62%), Gaps = 4/237 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 IL+V+DD + +L + GF+ SV + MDR++ R+ F L+VLD MLPGED Sbjct: 11 NQAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGED 70 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G SICRRLR+ + +PI+M+TA E++DRI+GLE+GADDY+ KPFN RELLARI+++LRR Sbjct: 71 GFSICRRLRAACS-VPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRR 129 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPLS 181 + + + F ++++ +R++ + + +T+ EF +L A +P + L+ Sbjct: 130 AS--YAHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLT 187 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 R++L+++ +ERSID ISR+R+ +E + P +I+TV GY+F + Sbjct: 188 REQLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVER 244 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 136/232 (58%), Gaps = 5/232 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+E K+L+++DD +R L YL + ++V + + + ++ + HL++LD++LPG Sbjct: 1 MKE--KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPG 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G IC+++R S PII ++ K + D++ GL+ GADDY+ KPF+ EL ARI+A L Sbjct: 59 MKGYEICQKIRMLSEA-PIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANL 117 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + ++ + V + G +++L + ++F + + L + E +L LV + Sbjct: 118 RRSK--MNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 S +K+ + G ++ +++ V IS LRR +EE+P+ P+ I+TV G GY F Sbjct: 176 SAEKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 133/237 (56%), Gaps = 12/237 (5%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+ DDD +R LL YL +G++VR + + + L++LD+M+P DG + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 RR+R S +P+IMV+AKG++ D+I+GL++GADDY+ KPFNP E LAR+R+ LRR Sbjct: 71 LRRVRETS-ALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGM 129 Query: 127 LPGAPSQEEA---------VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 GA + + V++ L+L + R DEP+ LT EF +L +SHP Sbjct: 130 PAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPG 189 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 ++ ++ G EY A ++ V IS+LR + +DP YI TV GLGY Sbjct: 190 RVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 16/242 (6%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQG-FQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ + I++++DD + + L ++G F V E R + +L++LD+ LP Sbjct: 1 MKRS--IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLP 58 Query: 60 GEDGLSICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 +G ICRRLR + + +PIIM+TA+ +E D+I GL +GADDYI KPF+ REL+ARI Sbjct: 59 LMNGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARIN 118 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 AVLRR +V G ++ + + + + LT EFA+LK L Sbjct: 119 AVLRRTEGTP-------SSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKG 171 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 L+R+ L++ G +Y R++DV I R+R+ + D YI+T G+GY FV G Sbjct: 172 RVLTREYLLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVEAGK 227 Query: 238 KA 239 +A Sbjct: 228 QA 229 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 8/230 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++V++D++ + L LT +G +V + +++ + L++LDLMLP DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR+ S +PII++TA+GE +R+ GL++GADDYI KPF+ ELLAR+ A+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P V+ LNL TRE+ + LT EFA+L+ + HPR +R L Sbjct: 138 SRPV------TVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTL 191 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ G Y ++V IS LR + + + I+TV+G+GY PD Sbjct: 192 LSRVWGFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLRPD 239 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +ILVVDDD L ++ L GF+ A+ Q + L++LDLMLPG DG Sbjct: 31 KARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDG 90 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +CR++R +S+ +PI+M+TAK + D + GLE GADDY+PKPF P EL+AR+RA LR Sbjct: 91 IEVCRQIRGESD-VPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR-- 147 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + +++ + R E + LT EF +L AL P + +R+ Sbjct: 148 -----PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRE 202 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 L+ G ++A R ++V + RLR +E DP P + TV G+GY Sbjct: 203 LLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 139/237 (58%), Gaps = 3/237 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + I +VDDD +R+LL YL GF + NA + + R L+V+D+MLPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +GL + R LR++S +P+I +TA G+ DRIVGLE+GADDY+ KPF PRELLARIR VL Sbjct: 61 MNGLELFRNLRAES-TVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREP 179 RR E + F + L+ R + + + L+ E+ +L+ + +P+ Sbjct: 120 RRTEG-GARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRV 178 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 LSRD+L+ +GR +RSIDVQISRLR + ++ P+ I+TV G GYV D Sbjct: 179 LSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDV 235 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 139/231 (60%), Gaps = 5/231 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+ DD+ + +L Y ++ A+ E+ R+ + + +++LD+M+P EDG Sbjct: 3 HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR++R++S+ +P+I++TA+GE+ ++I+GL+IGADDYI KPF+P E++ARIRA+LRR Sbjct: 63 VCRKIRAKSD-VPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + S E V++ ++NL + + LT E + L S+P + +RD L Sbjct: 122 KENEQTS--ENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNL 179 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRY-IQTVWGLGYVFVPD 235 ++ G +Y R++D I RLR + + HP + I+T+WG+GY F D Sbjct: 180 LDSLWGFDYFGDSRTVDSHIKRLRAKL-DMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 145/232 (62%), Gaps = 3/232 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ++ IL+VDDD++L +L RYL + + V + N +++ L +++LD+M+P +G Sbjct: 2 SHNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHING 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C++LR S+ +P+IM++A+GE DRI GLE GADDY+ KPF PREL+ARI AV++R Sbjct: 62 FDLCKKLRKNSD-IPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRF 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + A AV +G+ ++ + + + LT EF +L +V +P LSRD Sbjct: 121 EHSEDTA--NNAAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILLSRD 178 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +L N G + A R++D+ +SRLR + +DP P+YI+TVWG GY+F+ D Sbjct: 179 RLYNELTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIAD 230 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 133/234 (56%), Gaps = 6/234 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+L+V+DD + L+ LT V V +AE + + + + L++LD+ LP DGLS Sbjct: 5 KLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQMDGLS 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR+++ +I++TA ++DR++GLE+GADDYI KPF REL AR++ LR +A Sbjct: 65 LCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRAQ 124 Query: 126 ELPGAPSQEEAV-----IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 L + E +V + G + + +++ ++ + LT+ EF +L HP Sbjct: 125 LLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHVF 184 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR +L++ G ++S E +++ I+RLR +E + P I+TVWG+GY P Sbjct: 185 SRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTP-IIETVWGVGYKLNP 237 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 143/231 (61%), Gaps = 3/231 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + IL++DDD L LL YL +G+++ + + E + + L++LD+M+PG D Sbjct: 2 STHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGID 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +R+R S+ +P++M+TAKGEE DRI+GLE+GADDY+ KP++ RELLARI+A+LRR Sbjct: 62 GFETLKRIRE-SSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + ++A +LN T ++ + E +P+T+ EF VL+ L+S + + + Sbjct: 121 IELDK-NQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPK 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + L GRE A +RSID+ +S +RR + + IQT+ G+GY+FV Sbjct: 180 EDLYLEVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSK-IQTIRGIGYMFV 229 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 134/233 (57%), Gaps = 5/233 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 +L+V+DD + LE LT +G++V + E+ L L+++D+MLP Sbjct: 14 TPARTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRL 73 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 +G + R LR++ +P+IM++A+G E+D+++GLE+GA+DYI KPF+ ELLAR++AVLR Sbjct: 74 NGFELLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLR 133 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + A + G +N TRE+ R D + LT+ EF VL L LS Sbjct: 134 R-----DAIARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLS 188 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R+++ G + R+ID I +LR +EE+ PR++ TV G+GY FVP Sbjct: 189 REQIQAKVWGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFVP 241 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 7/237 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR--ESFHLMVLDLMLPGE 61 +LVVDDD + R LL+ YL + ++VR + + R + L++LD+MLP Sbjct: 11 TRTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDT 70 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG ++CR +RSQS P+PIIM+TA ++ DRIVGLE+GADDYI KP+NPRELLARI+A+ R Sbjct: 71 DGFTLCRSVRSQS-PVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHR 129 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPL 180 R PGAP + + F F +++ R + + +P+ LTS +F +L+ H E L Sbjct: 130 RMQLGAPGAPVR---FLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETL 186 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 R +LM RGR+ ++RS+DVQ+SRLR+ + +D P I+TV G GYVF D S Sbjct: 187 DRARLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADVS 243 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 140/239 (58%), Gaps = 14/239 (5%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES--FHLMVLDLMLPGEDG 63 KIL+V+D+ + ++ + ++ + + + + + + ++ LDL LPG DG Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + + +++R QS +PIIM+TA+ E D+++GLE+GADDY+ KPF+P L+ARI+A+ RR Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 124 ANELPGAPSQEEAV---------IAFGKFKLNLGTREMFREDEPM-PLTSGEFAVLKALV 173 +++ V + FK++ TRE + DEP+ LT EF +LK L Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +PR+ SR++L+ L +Y ER++D I +LR+ +EE P+ IQTVWG+GY F Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEE--VGPQVIQTVWGVGYKF 238 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 137/235 (58%), Gaps = 1/235 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL++DD+ + L+ + G+ + + + RE+ L+++D+M+P DG Sbjct: 2 KKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + CR +R + P+I ++AKG+ VD+ VG + G DDY+ KPF+PRELL I A LRR A Sbjct: 62 TTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRR-A 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + + ++ G+F L+ G + ++ E + LT EF + AL S P LS+++ Sbjct: 121 SMAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 L+ A G+E+ SI V I +LR VE+DP+ PR IQTVWG+GY F P+G + Sbjct: 181 LVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEGREG 235 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 5/237 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ++IL+V+D+ +R L+ + ++V + + E+ HL++LD+MLP + Sbjct: 2 QQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +CR +R + IIM+TAK EE ++ GL++GADDY+ KPF+ ELLAR++A LRR Sbjct: 62 GFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRR 121 Query: 123 QANELPGAPSQE---EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 + P+++ I F L+ + P+ L++ EF +LK E Sbjct: 122 IDLQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEV 181 Query: 180 LSRDKLMNLARGR--EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + R+ L+ G E R+ID I LRR +E+D A+P+ I ++ G GY F Sbjct: 182 VLREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILV DD+ +R +L LT +G++V + ++ +L S L+VLD+M+P +G Sbjct: 4 RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMNGYQ 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA- 124 C +LR SN +PI+ +TAKG + D+ +G GADDY+ KPF+ EL AR++A+LRR Sbjct: 63 TCLKLRETSN-VPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121 Query: 125 --NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + E ++ L + + + LT EF +L L+ +P++ S Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181 Query: 183 DKLMNLARGREYSAM-ERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++L A Y +I V I LR+ +E+DPA+P YI+T+WG GY F Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRF 232 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 88/241 (36%), Positives = 128/241 (53%), Gaps = 14/241 (5%) Query: 1 MQENYK--ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML 58 M + +LVVDD+ R+R L+ YL + V + R + L++LD+M+ Sbjct: 1 MAPGKRPVVLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMM 59 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 P DG +R+R +S +P+IM+TA+G DR+ GL +GADDYI KPF+ REL AR++A Sbjct: 60 PRLDGWQTLQRIREES-AVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQA 118 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 VLRR A ++ I G + R P+PLT EF +L L +HP + Sbjct: 119 VLRRSAGQVEANVP-----IRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQ 173 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF--VPDG 236 SR+KL++ G ++ R++D I LR + E I TVWG+GY F VPD Sbjct: 174 VFSREKLLDRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAEVPDA 230 Query: 237 S 237 Sbjct: 231 Q 231 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 1/230 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILV++DD + L+ + L + + E+ + +++LDL LP DG+ Sbjct: 2 KTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGI 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR +R PI +VTA+ EE+DRI+GLE+GADDYI KPF+ REL R+ RR Sbjct: 62 EVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121 Query: 125 NELPGAPS-QEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + P+ I G K++ R + +D + ++ EF +L+ + + P + SR+ Sbjct: 122 KKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSRE 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ G E+ ER ID + R+R +E++ A P +I+T+WG+GY F Sbjct: 182 MILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFT 231 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDD+ L ++ YL GF R Q R S ++VLDL LP DGL Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRR+R+ S+ I+M+TA+G E D+I GL +GADDYI KPF+ REL+ R+ AVLRR Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR--P 158 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P Q + G L+ ++ + + LT EF +L AL P + L+R L Sbjct: 159 RTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDL 218 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + + ER +DV I LRR + D +I TV G+GY Sbjct: 219 VTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 134/237 (56%), Gaps = 2/237 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++ KIL+V+DD + +++ YL ++GF V + + + L++LDLMLPG Sbjct: 1 MKDK-KILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPG 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C+++R S PIIM+TAKG+ +++ GL IGADDY+ KPF ELLARI A+L Sbjct: 60 LDGYQVCQKIRETSY-TPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAML 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + +E + + ++ ++ ++ + + E +LK L+ +P + Sbjct: 119 RRIEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 R++L+ G ++ +R ID+ I RLR+ ++ I+TVWG+GY F + S Sbjct: 179 KREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVEKS 235 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 148/238 (62%), Gaps = 4/238 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + +L+V+DD+ + +L LTE G V N +M+ L + F L+VLD+MLPGE+ Sbjct: 25 QGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGEN 84 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GLSICRRLR+ +N +P++M+TA GEE+DRI GLEIGADDY+ KPF+ REL ARIRA+LRR Sbjct: 85 GLSICRRLRAHTN-VPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRR 143 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLS 181 A V+ F ++L+ R++ + + T+ EF +L A +P LS Sbjct: 144 TA--YAPDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLS 201 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 R++L+++ +ERS+DV +SR+R+ +E+D P ++TV GY+F +A Sbjct: 202 REELLSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATVEEA 259 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 93/231 (40%), Positives = 134/231 (58%), Gaps = 7/231 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KIL+VDD+ + LL L G+QV + E+ ++ L+VLDLMLPG DG Sbjct: 3 KEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDG 62 Query: 64 LSICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 L + R +R+ PI+M++AKGEE D I GLE+GADDYI KPF+P+ L+ARIR+VLR Sbjct: 63 LEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLR 122 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 RQ + AP IA ++ + + + LT EF +L L S P + Sbjct: 123 RQ--QAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R ++++ RG Y+ +RS+DV IS LR+ +E+ + YI+TV G+GY F Sbjct: 181 RWQIVDKIRGEHYAVTDRSVDVLISGLRKKLED---YGEYIETVRGVGYRF 228 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 I++VDD+ LR + + YL +G+ + E+ L+ L++LD+ +PG DGL Sbjct: 3 TIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGLE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +RSQ +P+I ++ + +D++ E+GADDY+ KPF+ EL ARI+A +R Sbjct: 63 VCREIRSQ-LSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIR---- 117 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 PS E + +G ++ + E E + LT+ E +L HP + + ++L Sbjct: 118 MYAMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQL 177 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + + + ++ V IS LRR +E P P YIQTV G GY FVP Sbjct: 178 YDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+ DDD +L ++L Y ++ F V + + + L + +MVLD+M+PG DG + Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CRR R ++ +PII ++AK +E DR+VGL +GADDY+ KPF+ REL+AR+++ LRR+ E Sbjct: 66 CRRARQFTD-IPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRGE 124 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + + ++ E+ R+ + LT EF++L L S P SR +L+ Sbjct: 125 VLSQVAS----YEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLL 180 Query: 187 NLA-RGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 A G Y ER+ID I LR+ +E DP+ P YI TV+G+GY F Sbjct: 181 EKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKF 227 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 85/237 (35%), Positives = 143/237 (60%), Gaps = 4/237 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 YK+LV++DD+ +R +L YL+E+G+ VR E+ R++ + +++LDLMLP DG+ Sbjct: 2 YKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGM 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C +R +S+ +PI++++ K E +R+ L+ GADDY+ KPF+ E+ AR+ A++RR Sbjct: 62 GVCASIRERSH-VPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQ 120 Query: 125 ---NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 E A + E +L+ R + + + T EF ++K +SHP + S Sbjct: 121 FSATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 R++L+N RG + +R+IDV I LR+ +E++P PR I+TVWG GY + D S+ Sbjct: 181 REELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTDHSQ 237 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 2/232 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD+ + ++ L G++V + + L + L+VLDL++PG DG Sbjct: 2 PNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGY 61 Query: 65 SICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 SICR L+ + +PIIM++A+ +E+D+++GLE+GADDYI KPF+PREL+AR+ A LRR Sbjct: 62 SICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRR 121 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 E P + +I GK ++ + + L + EF +L L P + SR Sbjct: 122 DKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSR 181 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+ + S R++DV I R+R+ +E A+ +YI+T G+GY F+ Sbjct: 182 YFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIE 233 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 3/236 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +L+VDDD +R L+ YL + G +V A+ QM L + ++VLD+MLPG Sbjct: 1 MDHVDHVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPG 60 Query: 61 EDGLSICRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +DGL +CR LR+ + PI+++TA+ +E DRIVGLE+GADDY+ KPF RELLARI+AV Sbjct: 61 DDGLVLCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAV 120 Query: 120 LRRQANELPGAPSQE-EAVIAFGKFKLNLGTREMFRE-DEPMPLTSGEFAVLKALVSHPR 177 LRR P E ++ FG ++L+ R + + L+ E+ +L+ + HP+ Sbjct: 121 LRRTRMLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHPQ 180 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 LSRD+L+NL +GRE +RSID+ +SRLR+ + +D P YI+TV GYVF Sbjct: 181 RVLSRDQLLNLTQGREAELFDRSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVFA 236 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 9/230 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD+ +R +L L + V +A+Q L+ + L++LD MLPG G+ Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 65 SICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 + RRL+ ++ +PIIM+TAKGEE +++ GLE+GADDYI KPF+PREL+AR++AVLRR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + P I L+ + + D P+ + E+ +L+ ++H +R Sbjct: 124 TDSMGISEP------IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++L++ G ER++DV I RLR+ + + H R+IQTV G GY F Sbjct: 178 NQLLDHVWGGNVYVEERTVDVHIRRLRKALSLE-GHDRFIQTVRGAGYRF 226 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 138/235 (58%), Gaps = 11/235 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDDD + +++ ++ F VR+ +A M L + L+VLD+MLP GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + ++L+ + +P+I +TA+ ++D I+GLE+GADDYI KPFNPR L+ARI+AV RR Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 ++ V+ G ++++ + M ++ + L EF +LK ++ +P + +R ++ Sbjct: 122 -----GPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEI 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV-PDGSKA 239 ++ G ++ R++DV IS+LR + +I+TV G+GY V P+ K+ Sbjct: 177 LDRVWGMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLVIPEDEKS 226 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 7/233 (3%) Query: 1 MQENY-KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ +L+++DD + L++ Y+ + G+ + + E + LD+MLP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 DG +C+ +R + +PIIM+T KGE D+I GL+IGADDY+ KPF+P EL+AR++AV Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 +RR + E+ V++ ++ + D+ + + E +L L S+P + Sbjct: 121 MRR-----ADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQV 175 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R +L++ G + R+IDV I R+R + E A I+T+ G+GY F Sbjct: 176 FTRQQLLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 6/231 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+E KIL+VDDD L + L +G++V + + + L RE L+VLD+M+P Sbjct: 1 MKE--KILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPR 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G + +++R +S+ +P+I++TAK + VD++VGLE+GADDYI KPF+ +ELLARI+A+L Sbjct: 59 LSGFEVLKKIRERSD-VPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL 117 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 + + V+ G +++ + R+ EP+ LT EF +L L+ P + Sbjct: 118 ---RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAF 174 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +R ++ + R IDV ISRLR +E DP+ P IQTV +GY Sbjct: 175 TRAQISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 143/233 (61%), Gaps = 7/233 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N I +V+D+ L LL+ YL + F V+ + +++ + L++LDLMLPG DG Sbjct: 10 NKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADG 69 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +++CR +R+ S +PIIMVTAK EE+DR++GLEIGADDY+ KPF+PRE++AR++AVLRR Sbjct: 70 VTLCREIRTFS-AVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR- 127 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 G EA I G L T + + + +T EF++L A ++HP + SRD Sbjct: 128 -----GGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRD 182 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 +L+ +GR Y +R+ID I LR+ + I++V+G+GY F+ +G Sbjct: 183 ELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFILEG 235 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 10/229 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +KI+V++D+ + LL +L G+ + ++ +L+ E L++LDLMLPG G Sbjct: 3 HKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGT 62 Query: 65 SICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 +C+ ++ + +PIIM+TA+G+EVDRI+G E+GADDY+ KPF+PREL+ RI+ VLRR Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 N LP + + + + LT EF + V + + LSR Sbjct: 123 NVNILPKVAHWQR-----DGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 ++L++ A G E+ R++D + RLR+ + + +++TV G+GY Sbjct: 178 EQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGP---YADWLETVRGIGYR 223 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 103/236 (43%), Positives = 151/236 (63%), Gaps = 4/236 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +LVVDDD +R LL YL++ +V A + M + L + L++LDL +PGEDG+ Sbjct: 7 PHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGV 66 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 I R LR++SN +PI +V+ K +E DR++ LE+GADDY+ KPF+ RELLAR+RA+LRR Sbjct: 67 QIARELRTRSN-LPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAG 125 Query: 125 NELPGA-PSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSR 182 P +++ F ++LN+GTR + P+ LT+GEF +L A ++ P LSR Sbjct: 126 ATAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSR 185 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 D+L+ +R + +RSIDVQI RLRR +E DP+HP +I+TV G GYV ++ Sbjct: 186 DQLLESSRLYD-DVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVLDVPVTR 240 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 151/239 (63%), Gaps = 3/239 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +ILV DDD + L+ YL ++ F+VR + M ++L + ++VLDL+LP Sbjct: 1 MSSEGQILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGL +CR LR++SN +PII++++KGE++DRI+GLE+GADDY+ KPF+PRELLARI++VL Sbjct: 61 EDGLQLCRELRARSN-LPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVL 119 Query: 121 RRQANELPGAPSQEEAV-IAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPRE 178 RR + E F + ++ +R +F + LT GE A+L+ + HP Sbjct: 120 RRARSLPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNR 179 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 LSRD++++L G++ R+ID+Q+SRLR+ + ++ P I+TV GYVF + Sbjct: 180 VLSRDQILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFCSRVT 238 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 7/230 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 +L+++DD L L+ Q ++V+ + ++ + L++LD+MLP + Sbjct: 2 HKPSVLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKMN 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G ICR +R++ MPIIM+TAKG+E D I GLE+GADDY+ KPF+ RELLA R Sbjct: 62 GYEICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLA-------R 114 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 A L V FG KL+L ++++ + + LT+ EF +L+ + P L+R Sbjct: 115 AAAFLRRRKGHAATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTR 174 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 D++++ G + +RS+D ++ LR +E +P P IQT+ +GY F Sbjct: 175 DQILDGVWGNDIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRF 224 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 108/232 (46%), Positives = 157/232 (67%), Gaps = 6/232 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + + L+VDDD+ +R LL YLT R V + QM + LT E+F ++VLDLMLPGEDG Sbjct: 29 SVRALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDG 88 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 LS+CR LRS S+ +PI+M+TA+ E DRI+GLE+GADDY+ KPF PREL+ARI+ +LRR Sbjct: 89 LSLCRWLRSTSD-IPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRV 147 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSR 182 +E S + I F ++LN R++ + +PL++ EF +L+ + P LSR Sbjct: 148 RDER----SDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSR 203 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 ++L++ ARGR A +RSID+ +SRLR+ + +DP +P+ I+TV G GY+F Sbjct: 204 EQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFDA 255 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 10/234 (4%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + I V++DD + L++ L G+ +R + + R+ L +LD+M+PG Sbjct: 1 MSQT--IFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPG 58 Query: 61 EDGLSICRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 DGL +CRRLR+ + + +PII VTA+ E DR++GLE+GADDYI KPF PRELLAR++A Sbjct: 59 GDGLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKA 118 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 VLRR ++I+F ++ ++ E T+ EF +L L HP Sbjct: 119 VLRRFER------PSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGR 172 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SRD L++ G RS+DV + R+R +E DP +PR+++TV G GY F Sbjct: 173 VFSRDHLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRF 226 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 135/228 (59%), Gaps = 11/228 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Y I +VDDD+ +R ++E YL ++G+ ++ +AE+ L L VLD+MLPG +G Sbjct: 4 YHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGY 63 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 CRR+R+ + PIIMV+A+ EEVD+I+GLE+G+DDY+ KPF+PREL+AR+ L+R Sbjct: 64 EFCRRIRA-GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWK 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A A L+ R ++ E + +TS EF VL L HP SRD+ Sbjct: 123 QMKSHAEQT-----AISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDE 177 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L++L G +Y +R +D I R+R+ +++ P ++TVWG GY Sbjct: 178 LLSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRL 220 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 128/229 (55%), Gaps = 3/229 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 Y ILV DD+ +R++L YL + G+ V A+ +Q +L + + +LD+M+P DG Sbjct: 2 PYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +RLR S+ +P+I+V+AKG++ ++I+GL +GADDY+ KPFNP E +AR+ +RR Sbjct: 62 YQVLKRLRETSD-VPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRL 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P + V+ +L+ + EP+ LTS E+ ++ + HP ++ Sbjct: 121 KGMAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQ 180 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ +Y A E S+ V +SRLR + +D I+T+ GLGY Sbjct: 181 QIYECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRL 227 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 100/236 (42%), Positives = 151/236 (63%), Gaps = 4/236 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 IL+VDD+ LR L YL QGF++ +A +L E + ++D+M+PGEDG Sbjct: 10 PVHILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDG 69 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 LS+ R L ++ +P+I++TA+GE DRI+GLEIGADDY+ KPF PREL+ARIR+VLRR Sbjct: 70 LSLTRHL-IETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRA 128 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSR 182 A E+A F ++L+ R + + + +++ EF +L+A + HP++ L R Sbjct: 129 GR--APAVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDR 186 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 D+L++L +GRE +R++D Q+SRLRR +E D +P +IQTV G GY F D ++ Sbjct: 187 DRLLDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAADVAR 242 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E IL+V+D+ ++ +L+ L +G+ V N + + L++LD+MLPG Sbjct: 2 EKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL + RRLR + P+I++TA+ D++ GL+IGA+DY+ KPF ELLARIRA LR Sbjct: 62 GLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR- 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + + ++N TRE+ R D+ + LT EF +L ++ HP++ L+R Sbjct: 121 ---QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +++++ G +Y +DV I +R+ + + P + I T+ G+GY Sbjct: 178 EQILSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 IL+VDD+ +R ++ L G++ N +Q ++ L++LD MLPG G+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 65 SICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 + RRL+ + +PIIM+TAKGEE ++I GLE+GADDYI KPF+PREL+AR++AVLRR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 P EA I G L+ + + + +P + E+ +L+ ++H +R Sbjct: 124 TG------PGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++ G ER++DV I RLR+ + E + +QTV G GY F Sbjct: 178 GQLLDQVWGGNVYVEERTVDVHIRRLRKALGE--VYENLVQTVRGTGYRF 225 >UniRef50_A4J7U5 Two component transcriptional regulator, winged helix family n=89 Tax=Firmicutes RepID=A4J7U5_DESRM Length = 239 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 136/228 (59%), Gaps = 1/228 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR-ESFHLMVLDLMLPGEDGL 64 KILV++D+ +R+ + L GFQ + E+ + + + +LD+MLPG DG Sbjct: 3 KILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDGF 62 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR L+ + + IIM+TAKG+E D++ GL +GADDY+ KPF+P+EL+ARI A++RR Sbjct: 63 EVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRRLQ 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + E + G + + L ++ ++ ++ + LT EF ++K + + + +SRD Sbjct: 123 PFNTQLGGEAENRLCSGIYCICLDKKKFYKGEKEIDLTPKEFEIIKLFLHNVDKAISRDD 182 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++N GR Y + +DV I R+R+ +E DP++P ++ VWG GY + Sbjct: 183 ILNQIWGRHYIGDLKIVDVNIRRIRQKIENDPSNPATLEKVWGYGYRW 230 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 145/236 (61%), Gaps = 6/236 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLP 59 M+E KIL+++D++ +R+ + L +G+++ + +T E+ + +LD+MLP Sbjct: 13 MKE--KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLP 70 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G+ +C+ +R + + IIM+TAK +E D+I G GADDYI KPF+ +ELL R+ A+ Sbjct: 71 DISGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSAL 130 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR A + S E I F L++ R++F+ + + LT EF+++K L+S+ ++ Sbjct: 131 LRRVAKDDSSVKSSE---IVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQS 187 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 LSRD++++ G Y + +DV I R+R +E+DP+ P+YIQT+WG GY F + Sbjct: 188 LSRDQILDEVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 243 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 3/233 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ILVVDDD +R + Y+ +G V N + + R+ L++LD+M+ G +G Sbjct: 2 PKTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR-R 122 +C +R + +PII+++AK + VD+ +G ++GADDYI KPF P EL+ R + LR R Sbjct: 62 FEVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNR 121 Query: 123 QANELPGAPSQ--EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 E P +VI G +++ TR++ + + LT+ E+ +L + P Sbjct: 122 SPQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVF 181 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +R ++++ G Y + V I +LR +E DP+ P +I T WG+GY V Sbjct: 182 TRQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 136/230 (59%), Gaps = 4/230 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + +I +V+D+ R+ L+ L +GF+ N + + + +F L++LD+MLPG Sbjct: 1 MDKPVRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG++IC+R+R S+ +PIIM+TAK E D++ GL+IGADDY+ KPF EL+ARIR L Sbjct: 61 MDGMTICKRVREVSS-LPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNAL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 R+ + G P +E + + E+ + E + LT E+++L+ ++ + R L Sbjct: 120 RKHVPDNGGVPLEER--LQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVL 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +RD+++ G +YS +DV I LR + +D H +YI TV G+GY Sbjct: 178 TRDQILEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 92/236 (38%), Positives = 143/236 (60%), Gaps = 5/236 (2%) Query: 1 MQ-ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M IL++DDD + L+ YL + F+ N + +LL +F L++LD+MLP Sbjct: 6 MNARKNHILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLP 65 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G DGL +C+ +R Q++ MPIIM++A DR+ GLE+GADDYI KPF+ RELLAR++A Sbjct: 66 GIDGLDLCQMIR-QTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQ 124 Query: 120 LRRQANELPGAPSQEEAV--IAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHP 176 LRR +L + + I F + L+ T + R+ +PL+ E+ +L + HP Sbjct: 125 LRRTQGDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHP 184 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+RD+LM+L ++ + +R+IDV I RLR+ +E+DP +P+ + T+ G GY F Sbjct: 185 GRILNRDQLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQF 240 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 295 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 135/237 (56%), Gaps = 8/237 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 N KIL+VDD+ + L+ L +G+ + E+ + RE L+VLDLMLPG D Sbjct: 2 PNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGID 61 Query: 63 GLSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G + RR+R + + +PI+M+TAKGEE D + GLEIGA+DYI KPF+PREL+ARIR +L Sbjct: 62 GFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGIL 121 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR+ +A + G +++G + + + LT EF VL LV+ Sbjct: 122 RRRTR---VEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +R ++++ G Y+ ERS+DV I+ LR+ + +I+TV G+GY F + Sbjct: 179 TRGQIVDAVHGENYAVTERSVDVTIAGLRKKLGP---CADFIETVRGVGYRFREEAD 232 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 130/229 (56%), Gaps = 10/229 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+++D+ + +++ YL +G+ V S N + +E L++LDLMLP DG Sbjct: 3 NILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+ LR S+ + I M+TAK D+I GL IGAD+Y+ KP +PREL AR+ A+ RR Sbjct: 63 VCKILRKISD-VYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVG- 120 Query: 126 ELPGAPSQEEAVIAFGK--FKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 ++E VI+F +++ R + E + LT EF +L L S+ + +R+ Sbjct: 121 ------CKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTRE 174 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ A G E+ +RSIDV I LR+ +EED P+YI TV +GY F Sbjct: 175 AIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 138/233 (59%), Gaps = 4/233 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N KILV++DD+ + +++ +LT + + V + ++ ++++ L++LD+MLP DG Sbjct: 2 NGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 ++C+ +R SN +PI++++AK +EVD++ GL++GADDYI KPF+ EL AR+ ++R Sbjct: 62 FTVCKNIRLLSN-VPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRY 120 Query: 124 ANELPGAPSQEEAVIAF-GKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + ++ + + ++ +D+ + LTS EF++L L + + ++ Sbjct: 121 KGY--NKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTK 178 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +L ++ +I V + LR+ ++++ +P+YIQTVWG GY F+ + Sbjct: 179 KELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGE 231 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 99/223 (44%), Positives = 154/223 (69%), Gaps = 5/223 (2%) Query: 15 RLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQS 74 +L ALL YL GF+VR++ + + + R++ L++LD+M+PG +GL + R +R+ Sbjct: 15 KLCALLTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRA-G 73 Query: 75 NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA----NELPGA 130 + +P+IM+TAKGE+ DRIVGLE+GADDY+PKPFNPRELLARI+AVLRR + + Sbjct: 74 SKVPVIMLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRAETVGTSGGAPS 133 Query: 131 PSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLAR 190 +Q ++ G LN+ + +++ + L++ EF +L+AL+ +P L+RD+LM+LA Sbjct: 134 AAQRAVLVEAGGLALNVSRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMSLAW 193 Query: 191 GREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 GR++SA +RSIDV +S+LR ++ H + I+TVWG GY+FV Sbjct: 194 GRDFSAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMFV 236 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVV+D+ + LE LT +G+ V + R +F L++LD+MLPG+DGL Sbjct: 3 RILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGLE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR PI+M+TAK E ++++GLEIGADDY+ KPF +EL ARI+A+LRR + Sbjct: 63 VCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRASG 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + +FG +++ E+ + + + LT EF +L + LSRD+L Sbjct: 123 DT------DLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQL 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + GR+ R +D I+ LRR + +DPA PRY++ V GLGY F Sbjct: 177 IAATWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRF 223 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 103/233 (44%), Positives = 150/233 (64%), Gaps = 3/233 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 IL+VDDD +R L+ YLT+ G +V V + M L S L+VLD+M+PG+D Sbjct: 4 HTDHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDD 63 Query: 63 GLSICRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 GL +CR LR+ + P++M+TA+ +E DRI+GLE+GADDY+ KPF RELLARI+AVLR Sbjct: 64 GLVLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLR 123 Query: 122 RQANELPGAPSQEEA-VIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREP 179 R P E ++AFG ++L+ R + ++ + L+ E+ +L+ V HP+ Sbjct: 124 RTRMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRV 183 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+RD+L++L +GRE ERSID+ +SRLR+ + +D PRYI+TV GYVF Sbjct: 184 LNRDQLLSLTQGREAEMFERSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVF 236 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 103/237 (43%), Positives = 146/237 (61%), Gaps = 4/237 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD +R + +YL G + + +N +MD L F L++LD+M+PGEDGL Sbjct: 8 PHILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGEDGL 67 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 S RRL S P++M++A EE DR+VGLEIGADDY+ KPF+PRELLARI+A+LRR Sbjct: 68 SAARRL-SAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSE 126 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFR---EDEPMPLTSGEFAVLKALVSHPREPLS 181 P A + + F + L+ TR++ R + LT+ EF +L A + PR L+ Sbjct: 127 RREPLAGTLGGRKLGFAGWMLDTDTRDLVREADGAAKIALTTAEFKLLVAFLERPRFVLT 186 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 R++L+++ GR +R+ID Q+SRLRR +E+DPAHP+ I TV GY D + Sbjct: 187 REQLLDITSGRSAEVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAADVRE 243 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 137/234 (58%), Gaps = 9/234 (3%) Query: 1 MQEN-YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ N Y IL+ DD+ + L Y+ ++G++ AN ++M ++ + L++LD+M+P Sbjct: 1 MENNQYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 DG+ R LR+ S +P+IMVTAK +E DR+ GL GADDYI KPF+P+ELLARI A Sbjct: 61 EMDGMEALRELRT-SRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQ 119 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 +RR +E + + K+NL +R++F + E + LT EF +L + HP + Sbjct: 120 IRRNYGYNDDESKEE---LQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQV 176 Query: 180 LSRDKLMNLARGREY-SAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R++L++ G Y + R++D + +R + + Y +TV+G+GYV Sbjct: 177 FNREQLLDHVWGVNYTTGGHRTVDTHMKTMRFKMG---SGGDYFRTVYGVGYVL 227 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 141/234 (60%), Gaps = 10/234 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+++DD + L+ YL +GF+ V++ L R ++LDLMLPG DGL Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 65 SICRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 ++ R ++ + P+++VTAKGEE DR+VGLE+GADDYI KPF+P+E++AR++AVLRR Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + + ++ G +++G E E P PLT+ EF +L AL+ L R Sbjct: 123 RETQ-----QRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 + L+N G +Y +R++DV I RLR+ + E A +++TV +GY F +G Sbjct: 178 ETLLNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEG 228 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 105/235 (44%), Positives = 153/235 (65%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+VDDD +R L+ YLT+ G + VA+ QM L + L+VLD+MLPG Sbjct: 1 MDHINHILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPG 60 Query: 61 EDGLSICRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +DGL +CR LR+ + +PI+M+TA+ ++ DRI+GLE+GADDY+ KPF RELLARI AV Sbjct: 61 DDGLVLCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAV 120 Query: 120 LRRQANELPGAPSQEE-AVIAFGKFKLNLGTREMFREDEP-MPLTSGEFAVLKALVSHPR 177 LRR P E ++AFG+++L+ R + ED+ + L+ E+ +L+ + HP+ Sbjct: 121 LRRTRMLPPNLLISETGRLLAFGRWRLDTTARHLLDEDDTMVALSGAEYRLLRVFLDHPQ 180 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 LSRD+L+NL +GR+ +RSID+ +SRLR+ + +D P YI+TV GYVF Sbjct: 181 RVLSRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDSREPTYIKTVRNEGYVF 235 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 10/237 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+++DD L +LL+ L ++GF + + L + L++LD+MLP DGL Sbjct: 7 KKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGL 66 Query: 65 SICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 IC+ +R + +P+I +TA+ E DRIVGLE+GA+DY+ KPF REL+ARI+ R Sbjct: 67 DICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR- 125 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + ++ G +L+ + ++ P+ LT+ EF +L+ L++ P SR Sbjct: 126 -------NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSR 178 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 ++L+N G++ + +R++DV + RLR+ VE+DPA P I +V G GY F P S A Sbjct: 179 EQLLNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEPRRSMA 235 >UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax=Proteobacteria RepID=Q3KAS5_PSEPF Length = 235 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 94/229 (41%), Positives = 142/229 (62%), Gaps = 6/229 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++L+V+DD RL AL+ +L + G++VR+V + ++VLDLMLPG+ GL Sbjct: 8 RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSGLH 67 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +RS S+ PI+++TAK +++D I+GLE GADDY+ KP P LLAR+RA+ RRQ Sbjct: 68 VCREIRSVSD-TPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQVP 126 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + S + FG ++ RE+ E + LT+ EF +L L S + LSRD + Sbjct: 127 DSGVVSS-----LEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDI 181 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +N RG + + RS+DV IS+LR ++++P P I+TVWG GY+F P Sbjct: 182 LNRMRGIAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNP 230 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 294 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 7/240 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + ILVV+D + L +L R L+ G+QV A+ L + L++LD MLP Sbjct: 3 EHVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQL 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL + R +R Q+ P++M+TA+ EE D +VGLE+GADDY+ KPF REL+AR+RA+LR Sbjct: 63 DGLEVLRTIR-QTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLR 121 Query: 122 RQANE---LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 R L V+ +G L+ + + + LT EFA+L L+ +P Sbjct: 122 RDQRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGR 181 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 SR+ L++ G+ Y +RS+D + RLR+ + + I+TVWGLGY + + Sbjct: 182 AFSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEAPR 238 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 134/232 (57%), Gaps = 2/232 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ I + DDD +R LL YL +G+ +R N +++ L + E+ L++LDLM+P Sbjct: 1 MRSQPVICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPV 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G+ C +R ++ MPI+M+TAK ++D + G+ +GADDYI KPFNP E+ R++++L Sbjct: 61 MGGIEACIEIR-KTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + + + F L+L TR+ +++ + LT EF +L + HP + L Sbjct: 120 RRYRDYGSDR-ADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVL 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + +++ G ++ ++ V I+++R +E+ P P I+TVWG+GY Sbjct: 179 TVEQIYEAVWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 131/230 (56%), Gaps = 10/230 (4%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 + +V+D+ + +L+ YL + G++V S N ++ + + ++LDLMLP G Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC+++R S+ +PI+M++AK E DRI G+ IGADDY+ KPF+PRE++ R+ A+LRR Sbjct: 64 ICKQIRLTSD-VPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRT 122 Query: 126 ELPGAPSQEEAVIAFG--KFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + +F + ++ +E+ +E + LT EF ++ + HP SR Sbjct: 123 L------NKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRA 176 Query: 184 KLMNLARGRE-YSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ + + ERSIDV I LR+ +E + P+YI TV+G+GY F Sbjct: 177 DLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 136/233 (58%), Gaps = 6/233 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 K+LVVDD+ + L+ +L E G+QV + N ++ L + + L++LDLMLPG Sbjct: 7 NPGQKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGI 66 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G+ +C++++ + + MPIIMVTAK E + ++GLE+GADDY+ KPF+ REL+AR+R+VLR Sbjct: 67 GGMDLCKKIKEKYS-MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + I G LNL + F + + LT E+ +L +++P + Sbjct: 126 RTKEGEEEEQFEGN--ITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFT 183 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 RDKL++ G++ +R++DV I RLR + + ++T+ G+GY F Sbjct: 184 RDKLLDRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFNE 233 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 6/232 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 +L +DDD + +L+ L G+ + + + R L L++LDLMLP Sbjct: 70 NPPATLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDG 129 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL C +L+S +P+IM+TA+ + D++VGLEIGADDY+ KPF ELLARI+A LR Sbjct: 130 DGLEFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLR 189 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 ++ G +++L + + + + + LT+ EF +L L+ + ++ Sbjct: 190 -----ANPGAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVT 244 Query: 182 RDKLMNLAR-GREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R+++ + + R IDV I LR+ VEE P+ P +I TV G GY F Sbjct: 245 REEIRKRLWRDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRF 296 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 139/232 (59%), Gaps = 11/232 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGEDG 63 +K+LV++D+ +R +L+ YL G+QV + N ++ L +++LD+MLP G Sbjct: 3 HKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 S+ + +R S +P++M+TA+GEE D+++G E+GADDY+ KPF+PRE++AR++A+L R Sbjct: 63 WSLLKTIRETS-KVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 SQ++ + +++ +RE+ + + + LT EF +LK L+ + + +SR+ Sbjct: 122 YG------SQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSRE 175 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 K +N G ++ R++D I +LR + E I+TVWG+GY D Sbjct: 176 KCLNEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 134/227 (59%), Gaps = 4/227 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +LVVDD+ R+ A + L +G +V + N + + E +++LD+M+P DG Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 RR+RS S +P+I++TAK EE DR+ GLE+GADDY+ KPF+ REL++RIRAVLRR + Sbjct: 69 LRRIRSFSQ-VPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQ 127 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P + V + ++ RE+ + + + L E+ +L LV + L+ + L+ Sbjct: 128 P---PIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLL 184 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + G EY + + I+ LR+ +EEDP++PRYI T G+GY FV Sbjct: 185 SKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 131/228 (57%), Gaps = 6/228 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGEDGL 64 KIL+VDDD + LLE Y +G++ + N + L L++LDLM+P +G+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + R++R S+ +PI++++AK ++D+I GL GADDY+ KPFNP E++AR++++LRR Sbjct: 62 DVIRQVRKDSS-IPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREM-FREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 N++ + V+ G +N + E+ + +P+ LT+ EF +L L SHP S D Sbjct: 121 NQVTN---DKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSAD 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + +E +++ V +S LR +E + I+TVWG+GY Sbjct: 178 DIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYK 225 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 133/230 (57%), Gaps = 8/230 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ILV++D+ +L +E LT +G++V ++ R ++ L++LD MLPG Sbjct: 7 SSAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGIS 66 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL ICRRLRS N +P++++TA+ E DR GL+ GADDY+ KPF+ +ELL+RIR LR Sbjct: 67 GLEICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR- 125 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + F L+ TRE+ R + + LT+ E+ +L+ L+ HPR+ L+R Sbjct: 126 ------QPRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTR 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +++ G +++ I+V I LR +E P R IQTV G+GYV Sbjct: 180 QQILEHVWGCDFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVL 228 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 12/234 (5%) Query: 9 VVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICR 68 VV+D+ + + R L +G+ V + + L R + ++VLD+MLPG DGL +CR Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 69 RLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--QANE 126 R+++ + P+P++M+TA+ +E D++VGL +GADDY+ KPF+ REL+AR+ ++RR +A Sbjct: 82 RVQA-ARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 127 LPGAPSQEEAVIAF----GKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 L GAP+ + F G+ +++ R + R + LT EF +L L PR L+R Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 +KL+ ++ R++D + LRR + D ++TV G+GY F P G Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFEPGG 249 >UniRef50_C7I0W4 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=C7I0W4_THIIN Length = 365 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 108/253 (42%), Positives = 159/253 (62%), Gaps = 29/253 (11%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + +ILVVDDD LRA+L YLT GF V A+ + M L ++ H ++LDLMLPGED Sbjct: 126 PSQRILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLMLPGED 185 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL++ R LR +S+ +PI+M++A+GEE+DR++GLE+GADDY+PKPF+PR Sbjct: 186 GLALARELR-RSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPR------------ 232 Query: 123 ----------------QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEF 166 A +LP A E + FG F L+ + R+ + + L+ EF Sbjct: 233 ELLARLRALLRRAQPTSAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEF 292 Query: 167 AVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVW 226 +L+A+V+HP LSRD+L++ +G E A +RSIDV+++RLRR +E+DPA P Y++T+ Sbjct: 293 TLLQAMVAHPNRVLSRDQLIDWLKGYERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIR 352 Query: 227 GLGYVFVPDGSKA 239 G GY+F P G+ A Sbjct: 353 GQGYLFNPSGAGA 365 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 137/232 (59%), Gaps = 7/232 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +IL+V+D++RL + L++ L E + V + E L +S+ L +LD+MLP GL Sbjct: 2 RILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLD 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 I R +R P++++TAK DR+ GL+ GADDY+ KPF+ +ELLAR+RA+ RR Sbjct: 62 ILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTGQ 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 G I G F+L+L TR + R EP+ LT+ EF +L+ + +P + LS++ + Sbjct: 122 IAGG------DAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVI 175 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 ++ G + + +++ + LR+ + ++P P YI TV G+GY+F PD + Sbjct: 176 LDRVWGPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMFHPDPA 226 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 6/228 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGEDGL 64 KIL+VDDD + LL Y+ +G++ + ++ L LM+LD+M+P G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + + +R S +PII+V+AK ++D+I GL GADDY+ KPFNP E++AR++++LRR Sbjct: 62 DVVKEVRKDSQ-IPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPLSRD 183 NE+ + E V+ G + + E+ + + LT+ EF +L L SHP S D Sbjct: 121 NEVTNS---EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSAD 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 ++ +E +++ V +S LR +EE + I+TVWG+GY Sbjct: 178 EIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYK 225 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 357 2e-97 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 356 4e-97 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 354 1e-96 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 352 5e-96 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 350 2e-95 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 349 4e-95 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 348 9e-95 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 347 1e-94 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 347 2e-94 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 346 3e-94 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 346 4e-94 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 345 6e-94 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 344 2e-93 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 343 3e-93 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 343 3e-93 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 343 3e-93 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 343 3e-93 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 343 3e-93 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 342 6e-93 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 341 1e-92 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 341 1e-92 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 340 2e-92 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 339 5e-92 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 339 6e-92 UniRef50_B8G223 Two component transcriptional regulator, winged ... 339 6e-92 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 339 6e-92 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 338 1e-91 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 337 1e-91 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 337 2e-91 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 336 3e-91 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 336 3e-91 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 335 5e-91 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 335 1e-90 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 335 1e-90 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 334 1e-90 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 334 2e-90 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 334 2e-90 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 333 3e-90 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 333 3e-90 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 332 5e-90 UniRef50_B8I014 Two component transcriptional regulator, winged ... 332 6e-90 UniRef50_B8G179 Two component transcriptional regulator, winged ... 332 7e-90 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 332 7e-90 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 330 2e-89 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 330 2e-89 UniRef50_C4L340 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 330 2e-89 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 330 3e-89 UniRef50_B8I272 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 329 4e-89 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 329 5e-89 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_D1C683 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 326 3e-88 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 326 4e-88 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 326 4e-88 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 326 5e-88 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 325 8e-88 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 325 8e-88 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 324 2e-87 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 324 2e-87 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 323 3e-87 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 323 3e-87 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 323 4e-87 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 322 4e-87 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 322 5e-87 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 322 6e-87 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 322 7e-87 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 322 9e-87 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 322 9e-87 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 321 1e-86 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 321 1e-86 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 320 2e-86 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 320 2e-86 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 320 2e-86 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 320 3e-86 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 320 3e-86 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 320 3e-86 UniRef50_D1C280 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 319 6e-86 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 319 6e-86 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 319 6e-86 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 319 7e-86 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 319 7e-86 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 319 7e-86 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 318 9e-86 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 318 1e-85 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 318 1e-85 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A4J267 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 316 3e-85 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 316 4e-85 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 316 4e-85 UniRef50_C4L703 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 316 4e-85 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 316 5e-85 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 316 5e-85 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 315 5e-85 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 315 5e-85 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 315 6e-85 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 315 6e-85 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 315 7e-85 UniRef50_A4AL32 Putative two-component system response regulator... 315 7e-85 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 315 9e-85 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 315 9e-85 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 315 1e-84 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 314 1e-84 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 314 1e-84 UniRef50_Q3A190 Two component signal transduction response regul... 314 1e-84 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 314 1e-84 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 314 2e-84 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 314 2e-84 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 314 2e-84 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 314 2e-84 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 313 3e-84 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 313 3e-84 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 313 3e-84 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 313 3e-84 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 313 3e-84 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_B8G869 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 311 1e-83 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 311 1e-83 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 311 1e-83 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 311 1e-83 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 311 2e-83 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 310 2e-83 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 310 2e-83 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 310 2e-83 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 310 2e-83 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional r... 310 3e-83 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 309 4e-83 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 309 4e-83 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 309 5e-83 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 309 5e-83 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 309 6e-83 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 309 6e-83 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C0WE14 Two-component system transcriptional regulator n... 308 1e-82 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 307 2e-82 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 307 2e-82 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 307 2e-82 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 307 3e-82 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 306 3e-82 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 306 4e-82 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 306 5e-82 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 306 5e-82 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 305 6e-82 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 305 6e-82 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 305 6e-82 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 305 6e-82 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 305 7e-82 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_A4J7U5 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 305 8e-82 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 305 9e-82 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 305 9e-82 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 305 1e-81 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 305 1e-81 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 304 1e-81 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_A9AXT6 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 304 2e-81 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 304 2e-81 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 304 2e-81 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 304 2e-81 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 304 2e-81 UniRef50_A3ERN0 Putative two component transcriptional regulator... 304 2e-81 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 304 2e-81 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 304 3e-81 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 304 3e-81 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 303 3e-81 UniRef50_UPI0001B559F0 two-component system, response regulator ... 303 3e-81 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 303 3e-81 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 303 3e-81 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_D2LY16 Two component transcriptional regulator, winged ... 303 3e-81 Sequences not found previously or not previously below threshold: >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 153/235 (65%), Gaps = 2/235 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+E ++L+ DD+ +R LL++YL + + V + + E+ +L T +++L++LDLM+P Sbjct: 1 MKE-IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPK 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+ +CRRLR+ +N +PI+M+TAK +EVD+IVGL IGADDYI KPF+ E++ARI+A++ Sbjct: 60 IDGIEVCRRLRNNTN-IPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALM 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A +QE+ ++ F +++ + D+ + LT E +LK S+P + Sbjct: 119 RRFLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ +L Y + ++ V I +LR+ +E DP++P++IQTVWG+GY FV + Sbjct: 179 TKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 356 bits (915), Expect = 4e-97, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 142/229 (62%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +IL+++D + AL+ L + V ++ + L T ++F L++LD+MLP DG Sbjct: 2 QKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L +C+ LR+++ PI+M+TAK E DR+VGLE GADDY+ KPF+ REL AR++A LRR Sbjct: 62 LQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + Q + + FG+ ++ R + D+ + LT+ EF +L + SHP + SR+ Sbjct: 122 DMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSRE 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 KL++ G ++S E +++ I+RLR +E D ++P+Y+ TVWG+GY F Sbjct: 182 KLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 354 bits (911), Expect = 1e-96, Method: Composition-based stats. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG Sbjct: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL Sbjct: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL Sbjct: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA Sbjct: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 352 bits (906), Expect = 5e-96, Method: Composition-based stats. Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 4/234 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E +KILVV+DD LR LL L ++G+ + + + L++LD+MLPG Sbjct: 27 MPE-HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPG 85 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR +R++S+ +PI+M+TA+ E D++ GLE GADDY+ KPF RELLAR++A+L Sbjct: 86 IDGFELCRLIRTESS-VPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALL 144 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + + G ++ + + R + + EF + +V + Sbjct: 145 RRSQTQNSQTETTGG--LKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVF 202 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR++L+ G +Y R++DV IS LR+ +E DP+ PR++ TV G GY F Sbjct: 203 SREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 350 bits (900), Expect = 2e-95, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 136/231 (58%), Gaps = 2/231 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +N I+VVDD+ +R L+ YL +G++V N + LL +E L++LD+M+P Sbjct: 1 MNKN-TIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPN 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+ C ++R + N MPIIM++AK E++D+I GL GADDY+ KPFNP EL+AR+++ L Sbjct: 60 MDGIEACTKIREEKN-MPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + +I + +N T E+ ++ + LT EF +L+ L + Sbjct: 119 RRYKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 S +K+ E+ + ++ V I +LR +EE+P P+Y++TVWG+GY Sbjct: 179 SIEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 349 bits (897), Expect = 4e-95, Method: Composition-based stats. Identities = 90/237 (37%), Positives = 140/237 (59%), Gaps = 3/237 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KILVVDDD + L+ L +G+ V +AE+ +++ ES + ++D+MLPG DG Sbjct: 27 KKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDG 86 Query: 64 LSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 + R+LR + P++ ++AKGEE D+++GLE+GADDYI KPF+ RE++ARI+AV R Sbjct: 87 FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + I ++++ E+ D+ + LT EF +L+ L + + S Sbjct: 147 RIQ-LSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFS 205 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 RD L++ G +Y R++DV I RLR +EEDP++P+YI TV G GY F G + Sbjct: 206 RDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKE 262 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 348 bits (895), Expect = 9e-95, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 136/234 (58%), Gaps = 1/234 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+D+ +R + +RYL + ++V + N + + L++LDLM+P +DG Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C +R QSN +PIIM+TAKGEE DRI+GL +GADDY+ KPF+PREL+ R++ +LRR Sbjct: 62 ELCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A VI F K+ TR + + + LT EF VL + HP++ SR + Sbjct: 121 QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 L+ L + ++ V +SRLR +E+ +I TVWG+GY F P+G Sbjct: 181 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRN 234 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 347 bits (893), Expect = 1e-94, Method: Composition-based stats. Identities = 94/231 (40%), Positives = 143/231 (61%), Gaps = 6/231 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 ILVVDD+ +R LL L + G++V A+ + L++LD+MLP DGL + Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60 Query: 67 CRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 CR+L++ Q++ +PIIM+TAK EE+DR++GLE+GADDY+ KPF+ RELLAR++AVLRR A Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 125 --NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + E + G +L+ + + + D+ + LT E+ +LK LV++P SR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D+L+ G EY R++DV I LR +++DP I+TV G+GY F Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 97/232 (41%), Positives = 141/232 (60%), Gaps = 4/232 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD+ L L L ++GFQV + ++ + F L+VLDLMLPG DGL Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +ICR +R+ PIIM+TAK +++D+I+GLE+GADDYI KPFN REL+ARIRAVLRR Sbjct: 62 TICREVRAAG-MTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + + G L+ R P+ LT+ E+ +L+ L HP +R + Sbjct: 121 ---AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQE 177 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L++L G +++ ER++DV + R+R +EEDP+ PRY++T WG+GY + Sbjct: 178 LLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAEP 229 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 346 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 5/236 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILVVDD+ + LL L + G++V + + L +SF ++LDLMLP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + ++LR + PII+VTAK +E D++ GLE+GADDYI KPF+PRE+LARI+AV+RR Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 126 E-----LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 + P AV+ G +++ + R + + LT EF +L V L Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 SRD ++N G +Y++ R +D+ IS LR +E DP PR I+TV G GY FV DG Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 346 bits (889), Expect = 4e-94, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 139/232 (59%), Gaps = 5/232 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 E +IL+V+D+ +R + YL + + V +V + + ++ F L++LDLMLP Sbjct: 6 SETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRV 65 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G +CR +R S+ +PIIM+TAKGE DRI+GLE+GADDY+ KPF+PREL+AR+RA+LR Sbjct: 66 PGERVCRAIRDNSD-VPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + V+ FG+ +++ ++ + + LT+ EF +L L +P S Sbjct: 125 RVH----ADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 R +L+ G ++ ER+ID + LR + ++P +P+++ TV G+GY F Sbjct: 181 RMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 345 bits (887), Expect = 6e-94, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 146/233 (62%), Gaps = 5/233 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ ++ +++ YL ++G++V + N + +E L+VLD M+P G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + R +R +S +PIIM+TAK EEVD+++G E G DDY+ KPF+ REL ARI+ +L+R Sbjct: 64 VLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR--- 119 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 L EE V+ G L RE+F + +P+ LT EF +L+A + +P + SR +L Sbjct: 120 -LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 + A G Y ER+ID IS LR+ +E+DPA+P YIQTV+G+GY P G K Sbjct: 179 LEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGEK 231 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K++VVDD+ + +LE L ++G+ V + L+ E +++LD+MLPG DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR +R + MPIIM+TAK E+D+++GLE+GADDY+ KPF+ REL+AR++A LRR + Sbjct: 64 VCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + I + + + E + LT EF + L H + ++R+ L Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + G +Y R++DV I RLR +E+DP+HP YI T G+GY Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 134/236 (56%), Gaps = 7/236 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + KIL+VDD+ R+R L+ +L G+ + LL+ F L++LD+M+P D Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G++ R +R++ P+I++TA+GEE D++ GLE GADDY+ KPF+PREL+AR++AVL R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + + FG+ ++ + + E + LT EF +L L S+ LSR Sbjct: 191 TMPRSEAS----DGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSR 246 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +K++ +Y +R++D + LR + YI TVWG+GY F PD ++ Sbjct: 247 EKILQKVWNYDYFGEDRTVDTHVKMLRGHLG---KCRGYIATVWGIGYKFDPDAAR 299 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 146/233 (62%), Gaps = 8/233 (3%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++++KILVVDD+ ++R LL L ++ +Q + +N ++ L+ R++FHL++LD+M+P Sbjct: 3 EQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEM 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL+ C R+R SN +PIIM+TA+ +E+DRI GL+IGADDYI KPF+PRELLARI A LR Sbjct: 63 DGLTACMRIREFSN-VPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + A + GK +L+ +R + +P+ LT EF +L V + + S Sbjct: 122 RSHRF----TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFS 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R++L++ G +Y R++D I LR + E IQTVWG+GY F Sbjct: 178 REQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFEE 227 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 133/240 (55%), Gaps = 13/240 (5%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR---------ESFHLM 52 +ILVV+D+ +R ++ L ++GF V A+ E+ L+ Sbjct: 21 SPASRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLV 80 Query: 53 VLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPREL 112 VLDLMLP +GL CR LR Q +PI+M++AK E DR+VGLEIGADDY+ KPF REL Sbjct: 81 VLDLMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTREL 140 Query: 113 LARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKAL 172 +AR RA+LRR N+ P+ V+ + KL + +D + L+ EF +L+ Sbjct: 141 VARCRALLRRSQNQPAETPA----VLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELF 196 Query: 173 VSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + HPR SRD+L+ G ++ ++IDV I LR +E +P++P Y+ TV G GY Sbjct: 197 MRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 343 bits (881), Expect = 3e-93, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 145/235 (61%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+V+DD + LLE +LT+ G V V + + E++ L+VLD+MLPG DG Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ICRRLR + P PI+MVTAK EEVD+++GLE+GADDYI KPF+ RE+LAR++A+ RR Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + ++ I GK + R++ E E + LTS EF +L HP SRD+ Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 L++ G +YS +++ I+RLR +E DP+ PRY++TVWG+GY F A Sbjct: 187 LLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREELA 241 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 343 bits (881), Expect = 3e-93, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 138/233 (59%), Gaps = 5/233 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +IL VDDD ++ +L+ L ++GF+V + ++ E+ + + S L++LDLM+PG DG Sbjct: 2 PQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 ++L++Q +PII+++A+ EEVDR+VG +G DDY KPF+P EL R++AVLRR Sbjct: 62 FETYQKLKAQ-REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR- 119 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 L E ++ +G L+ R + + + LT +F +L + S+P ++ Sbjct: 120 ---LGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKA 176 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L++ + + ++ V I RLR VE DP++P YI+TVWG+GY F +G Sbjct: 177 HLLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYEG 229 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 342 bits (879), Expect = 6e-93, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 145/229 (63%), Gaps = 3/229 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDD+ + L+ L + +V + E+ + + +++LD+MLP DGLS Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+++R SN +PIIM+TAKG+++D+I+GL+ GADDYI KPFN E+ AR++A+LRR N Sbjct: 73 VCQQIREFSN-VPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR--N 129 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Q+ VI G K++ +R ++ D+ + LT+ EF +L+ L +P + SRD L Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G++Y+ R++DV + RLR +E +P+ P+Y+ T WG+GY F Sbjct: 190 LKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 129/230 (56%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 K+L+++DD + L++ L++ G + ++ +++LD+MLP DG Sbjct: 3 QKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L +C+RLR +PI+M+T++ EE D++ L GADDYI KPF+ REL AR+ A +RR Sbjct: 63 LEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRY 122 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 E + + F L+ ++ + + +T+ EF +L + +P SR Sbjct: 123 RPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRT 182 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +L++L G YS E +++ I+RLR +EE+PA P+YI TVWG+GY F Sbjct: 183 ELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 2/229 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + ILVVDD+ + L+E YL +GF + N + R + E L +LD+MLP DG Sbjct: 2 SMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 ++C+R+R N P+IM+TAK EE+D+I GL +GADDYI KPF P EL+AR++A LRR Sbjct: 62 FTLCQRIRENHNF-PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRF 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P+QEE +IAF L++ T E ++ + LT EF++L L S+ +S + Sbjct: 121 TKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSE 180 Query: 184 KLMNLARGREYSAME-RSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +L + G +Y ++ V I LR + HP+YI+TVWG+GY Sbjct: 181 ELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYK 229 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 340 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 145/230 (63%), Gaps = 1/230 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ++L+VDD+ + LL+ +L ++GF V + L RE + +VLD+MLP DG Sbjct: 9 TKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDG 68 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +C+RLRS+ + PI+MV+AK +E D+++ LE+GADDY+ KPF+PRELLAR++A+LRR Sbjct: 69 IEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 128 Query: 124 ANELPGAPSQ-EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 E+ G + E + +L E++++ E +PLT E+ +L L+ HP L+R Sbjct: 129 EAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTR 188 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++L+ G ++ R +DV I +LR +E++P P+YIQT+ G GY F Sbjct: 189 ERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 145/234 (61%), Gaps = 5/234 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++ K+LVV+D+ +R + L G++V + E LLT L+VLDLMLPG Sbjct: 3 EKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGI 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL +C+ +R II++TAKG++ D+I+GLE+GADDY+ KPFNP EL+ARI+A+LR Sbjct: 63 DGLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLR 122 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R+ G +G L+ ++ + ++ + LT E+++LK + +P + L Sbjct: 123 RRDRYEAGRTG-----YTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALR 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 R++++N G +Y +++DV I RLR +E++P+ PRYI+T+WG GY + P+ Sbjct: 178 REEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 137/231 (59%), Gaps = 3/231 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 K+LVVDDD ++ +L YL ++G+ V + + + + +++LD+MLP DG Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C+ +R S+ +PIIM+TA+ +E DRI+GLE+GADDY+ KPF+P+E+LAR+RA+ RR Sbjct: 61 GVCKEIRRTSD-VPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 E ++ G L+ +R + P+ LT E+ +L+ ++HP + SR + Sbjct: 120 --PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQ 177 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 L+ + + ER++D I LR+ + P P YI+T++G+GY V + Sbjct: 178 LIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 339 bits (871), Expect = 5e-92, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 140/240 (58%), Gaps = 5/240 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 K+LVVDD+ + LLE L + F V++ N ++ + +++LDLMLP G Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + +R+R N P+I++TAK E D++ GLE+GADDY+PKPF+PRE++ARI AVLRR Sbjct: 62 EVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYE 121 Query: 125 NELP-----GAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 P AP + + G F ++ ++ D+ + LT EF +++ LV H + Sbjct: 122 KSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQV 181 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 LSRD+L+ G +YS R +D+QI+ LR +E DP P+Y++T+ G GY F G A Sbjct: 182 LSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDDA 241 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 133/238 (55%), Gaps = 7/238 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M KIL+VDDD + L+ YL ++ F + V + E+ +L++LDLMLPG Sbjct: 1 MATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR +R S +PIIM++AKGE D+++GLE+GADDY+ KPF+ +EL+AR++AVL Sbjct: 61 IDGYEVCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVL 119 Query: 121 RRQANELPGAPS----QEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 RR + + +++ +N + + + + E + L SHP Sbjct: 120 RRVVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHP 179 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + +R++L++ G EY R++DV I RLR +++ + + TVWG+GY F Sbjct: 180 NQVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFEV 235 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 141/233 (60%), Gaps = 2/233 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ YK+L+VDD+ + ++E+ L + +++ N E +ES L++LD+MLP Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +CR +R S +PI+M++AKGE +D+ VG +GADDY+ KPF+P EL R++A+L Sbjct: 61 IDGYEVCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALL 119 Query: 121 RRQ-ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 RR E + ++ I+ G+ ++N + E+F +P+ LT EF +L + HP + Sbjct: 120 RRSFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQV 179 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R++L EY +I V I +LR +E DPA P+YIQTVWG+GY F Sbjct: 180 FTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 145/234 (61%), Gaps = 6/234 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL-TRESFHLMVLDLMLPGEDG 63 ++L+V+DD +R ++E L+ +G + +V + E LL + F L++LD+MLPG DG Sbjct: 2 ARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDG 61 Query: 64 LSICRRLRSQS---NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +S+CR LR +P++M+TA+ +E +VGLE+GADDYI KPF+PR+L +R+RA L Sbjct: 62 ISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQL 121 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQ +P Q + + F +++L R + E + LT+ EF VL L S+P Sbjct: 122 RRQRMNAQASPEQRK--LEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVY 179 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR+++M+ G E+ RS DV I LR+ +E DP +PRYIQTV G+GY F Sbjct: 180 SREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 131/235 (55%), Gaps = 3/235 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + IL+ +DD + L+ +L ++G+Q+ A+ + RL+ + L++LD+M+P D Sbjct: 4 QRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMD 63 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G + R +R Q MPII ++AK + D+I GL +GADDY+ KPFNP ELLAR+ A LRR Sbjct: 64 GYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRR 123 Query: 123 QANELPG--APSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 AP+ + I G ++ R + ++ + LT EF +L L SHP++ Sbjct: 124 FRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVF 183 Query: 181 SRDKLMNLARGREYS-AMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 S + + G Y + ++ V I LR+ + ED H ++I+TVWG+GY F Sbjct: 184 SAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 138/230 (60%), Gaps = 6/230 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+DD + L L ++G++V + + + L++LD+MLP +DG Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C+ +R SN +PIIM+TAK EEVD+++GL++GADDYI KPF +ELLARI AVLRR Sbjct: 62 EVCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 ++L + I F+++L R + + + + L+ EF +LK L+S P +RD Sbjct: 121 SDLS-----KSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDM 175 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 ++ G + R++DV I LR VE+DP+HP+YI TV LGY F Sbjct: 176 IIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQE 225 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 337 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 131/241 (54%), Gaps = 5/241 (2%) Query: 1 MQEN--YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML 58 M + KILVVDD+ R+R LL YL + + + N ++ ++ L++LDLM+ Sbjct: 1 MDQTNETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMM 60 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 PG DG+ +CR++R + PIIM+TAKGEE +R+ G E G DDYI KPF+PRE++ R++A Sbjct: 61 PGTDGIEVCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKA 119 Query: 119 VLRR-QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 +LRR A + + V+ F ++ + + + LT E+ +L L P Sbjct: 120 LLRRASQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPD 179 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE-DPAHPRYIQTVWGLGYVFVPDG 236 + R+KL+ E+ R++D + RLR + + P + I TVWG+GY F Sbjct: 180 KVYDREKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGA 239 Query: 237 S 237 Sbjct: 240 E 240 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 129/229 (56%), Gaps = 3/229 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KILVVDD+ + L+E L G+ VR V++ E + +L L+VLDLMLP DG Sbjct: 2 KKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +CR LR QSN +PI+M+TA + D+I GL+ GADDY+ KPF+P+EL++RI+A+ RR Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 A E G+ + RE+ + + LT EF +L L H + LSR Sbjct: 122 QTLPGQA---ESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQ 178 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++ + R +DV IS LR +E++ P YI TV +GY Sbjct: 179 QLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 137/241 (56%), Gaps = 13/241 (5%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++IL+V+D+ + L+ L ++G++V V + ++ + L++LDLMLPG DGL Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61 Query: 65 SICRRLRSQSN-PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR-R 122 +CR++R S+ +P+IM+TAK +E+++IVGLE+GADDY+ KPF+PRELLAR++A LR R Sbjct: 62 EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 123 QANELPGAPSQEEAVI-----------AFGKFKLNLGTREMFREDEPMPLTSGEFAVLKA 171 I G + + E++ + LT EF +L Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 172 LVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +V++ + L+R+KL+ G ++ R++DV I LR+ + E P ++TV G+GY Sbjct: 182 MVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYR 241 Query: 232 F 232 Sbjct: 242 L 242 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 1/228 (0%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+ DD+ + L+E +L ++G+ V A+ E+ ++ + L+VLD+M+P DG + Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGYEV 65 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R++R++ + MPII ++AK + D++ GL +GADDY+ KPF P EL+AR+ A LRR Sbjct: 66 TRQIRAKHH-MPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLTL 124 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 ++ ++ + G ++ R + E + LT EF +L L SHP++ + + + Sbjct: 125 NQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENIF 184 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +Y ++ V I LR+ + ED + I+TVWG+GY F Sbjct: 185 QQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 335 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 136/238 (57%), Gaps = 1/238 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + +IL+V+DD + +L +L ++ ++V A+ + RLL + ++ ++LDLMLPG Sbjct: 1 MDQPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL ICRR R+ + PII+ +A+ EV RI+GLE+GADDY+ KPF+ EL+AR++A+L Sbjct: 61 VDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + + ++ RE + + LT EF +L HP + Sbjct: 121 RRVDALARDSRI-DAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVF 179 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 SR L+N G ++ E +++ I+RLR +E DPA P I TVWG GY G + Sbjct: 180 SRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQR 237 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 145/234 (61%), Gaps = 7/234 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+LVVDDD + L++ Y +GF+V +V + + + RE+ +++LD+MLPG+DGLS Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR+ +PIIM+TAKGEE DR++GLE+GADDY+ KPF+PREL+ARI+AVLRR Sbjct: 66 LCRRLRAV-RMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P Q + + ++ R++ + +T EF +L L +P+ +R++L Sbjct: 125 ADPATNWQ----LKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREEL 180 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 + G +Y +R++DV I RLR + P Y+QTVWG+GY F P Sbjct: 181 LGAVWGYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYKFTPPVKGG 232 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 138/233 (59%), Gaps = 1/233 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E KIL+V+DD+ + +++ L ++G+ + + + E++H++++D+M+P D Sbjct: 2 ERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ RR+R +S +PII+++AKGE+ D+I+GL +GADDYI KPF+ EL+AR++ +RR Sbjct: 62 GIESMRRIREKS-KVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 +E + +G K ++ + + + + LT+ E +LK +P ++ Sbjct: 121 AIYYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTK 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ + G E+ + ++ V + RLR +E+DP +P+ I+TVWG+GY D Sbjct: 181 VQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 334 bits (858), Expect = 1e-90, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 140/238 (58%), Gaps = 7/238 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +ILV DDD + +LE LT +GF V ++ ++ L + L++LD+M+P Sbjct: 1 MSVARRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG ++C R+R+ S +PI+++TA+G+ VD++VG +GADDY+ KPF+ EL+ R+ A+L Sbjct: 61 VDGFAVCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAIL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR E + FG ++N TR + D LT EF +L + SHP P Sbjct: 120 RRM------PTLPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPF 173 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +R+ L+ + + ++ V I RLR +E++PA PR+I+TVWG+GY F P G++ Sbjct: 174 TRESLLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 133/238 (55%), Gaps = 14/238 (5%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL----------TRESFHLMVL 54 ILV++D+ +R + L E+G+ ++ + L+ + L++L Sbjct: 22 ANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIIL 81 Query: 55 DLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLA 114 D+MLPG +GL +CR +R Q +PI+M++AKG E+DR+VGLEIGADDY+ KPF RE+LA Sbjct: 82 DVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 115 RIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVS 174 R RA+LRR + P V+ F L E + L+ E+ +L+ + Sbjct: 142 RCRALLRRTRIQQATLPP----VLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMR 197 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 HPR R++L++ G ++ +++DV I LR +E DP+HP+YI TV G GY F Sbjct: 198 HPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 147/234 (62%), Gaps = 10/234 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+++D++ + + E + ++GF+ V + + + T E++ L++LD+MLP DG+ Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +ICR++R S +PIIM+TAK E D+++G E+GADDY+ KPF+P L+ARI+AV+RR Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP-LTSGEFAVLKALVSHPREPLSRD 183 G +E +I F +N TRE+ EP+ LT EF +L LV +PR+ SR+ Sbjct: 120 --ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSRE 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMV--EEDPAHPRYIQTVWGLGYVFVPD 235 +L+ G ++ ER++DV I RLR+ + E+ P ++ TVWG+GY F D Sbjct: 178 QLLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP----FLYTVWGVGYKFDED 227 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 131/234 (55%), Gaps = 3/234 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+VDD+ R+R LL+ YL + F++ +N ++ L ++ ++LDLMLP DG+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 +LR PIIM+TAKGEE +R+ G E GADDYI KPF+PRE++ R++A+LRR + Sbjct: 65 ATKLREH-KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 127 L-PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + VI F +++ + +++ + LT E+ +L L P + R++L Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRY-IQTVWGLGYVFVPDGSK 238 + E+ R++D + RLR + + + IQTVWG+GY F + Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSND 237 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 333 bits (855), Expect = 3e-90, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 135/230 (58%), Gaps = 2/230 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + ILVVDD+ + L+ L + +QV SV N ++ + +++DLMLP DG Sbjct: 2 SKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +++R +PIIM+TAK +VD+I+GLE+GADDYI KPF+P+ELL+RI+ +LRR Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + A + + + ++ + + +E + LT EF +L+ L + + LSRD Sbjct: 122 DRAINLA--EIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRD 179 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +++ G EY R +D+ IS LR +E DP HP+ I+T+ G GY FV Sbjct: 180 QILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 84/234 (35%), Positives = 134/234 (57%), Gaps = 3/234 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 K+LV DDD +R ++ Y +Q ++ + + + ++ +E +++LD+M+P D Sbjct: 31 STMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLD 90 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G CR +R + + PIIM+TAK EE DR++GLE+GADDY+ KPF+PRE++ARIRA++RR Sbjct: 91 GFEACREIRKKWD-TPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + F + ++L RE+ E + EF +L LV P SR Sbjct: 150 LQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSR 209 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 ++L+ G +Y R+IDV I ++R+ +++ P IQTVWG+GY F D Sbjct: 210 EQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVDS 261 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 137/235 (58%), Gaps = 2/235 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E KIL+V+DD + L+ L ++G+ S + L + F L++LD+MLP Sbjct: 1 MVEQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G + +++R + N P+++++AK EE D+I+GL +GADDY+ KPF EL AR++A L Sbjct: 61 VGGYEVLQKIREKGN-TPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR N + +I ++N+ T E+ D + LT+ EF +LK + +PR+ Sbjct: 120 RRYLNF-SWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++++L G Y E ++ V I RLR +E+DP++P YIQT+WG+GY V + Sbjct: 179 TKNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 133/235 (56%), Gaps = 9/235 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+V+DD ++ L+ L +G+ V + LL +E L++LD+MLP DGL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 66 ICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C+++R ++ +P+IM++A+ E DR++GLE+GADDYI KPF+PRELLARI+A LR + Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P + +G ++ + + + E + LT EF +L + P + SR+ Sbjct: 123 RRNSTPPPLS----LTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSRE 178 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 L+ G S R++DV IS LR ++ + I++V G+GY + S+ Sbjct: 179 YLLQKVWGYTVSGDTRTVDVHISNLRSKLK---SVSPIIESVRGVGYRLAVNYSR 230 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 132/232 (56%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD+ + LL L ++ F+V + + Q + ++ F ++LDLMLP DG+ Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++ +++R PI+++TAK E D+IVGLE+GADDY+ KPF+PRE++ARIRA+ RR Sbjct: 62 AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTT 121 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + Q I G ++ + D + LT EF +L + + SR+K Sbjct: 122 QPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREK 181 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 L+N G +Y A R +D+Q+S LR +E++P HP Y++TV G GY Sbjct: 182 LLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPA 233 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 141/234 (60%), Gaps = 7/234 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ++L+VDDD L +++ L +GF V + + + + +++ ++LD+MLP D Sbjct: 2 PDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMD 61 Query: 63 GLSICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C ++R+ ++ +PIIM+TAK EE D+I+GL++GADDY+ KPF+PREL+AR+RA++ Sbjct: 62 GWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALI 121 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + ++ ++ G ++ + ++F +D + L EF +L L+ +P Sbjct: 122 RRDQDF-----KDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVF 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +R++++ G ++ R++D + R+R+ +E + IQTVWG+GY F Sbjct: 177 TREEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 127/232 (54%), Gaps = 5/232 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M EN IL+VDD+ + L+E YL +GF V ++ + ++ + +LD+MLP Sbjct: 1 MNEN--ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPD 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG IC+++R + PIIM+TAK E++D+I+GL IGADDYI KPFNP E++AR++ L Sbjct: 59 IDGFHICQKIREKYYY-PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 RRQANELPGAPSQEEAV--IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 RR Q V +N T + + + LT EF++L L H + Sbjct: 118 RRYMRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGK 177 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 + ++L G +Y ++ I RLR + E +P++I+TVWG+GY Sbjct: 178 VVPSEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 95/230 (41%), Positives = 133/230 (57%), Gaps = 5/230 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++LVVDDD + +++RYL GF V A+ R+ L+VLDLMLPG DG+ Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + RRLR+ P+P+IM+TA+ +E DRI GLEIGADDY+ KPF+PREL R+++VLRR Sbjct: 116 EVFRRLRAH-RPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRA- 173 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 P E V+ G ++ R R P+ LT EF +L L+ P +R + Sbjct: 174 --NETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGE 231 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+ G Y ++ V I RLR +E+DP PR + TVWG+GY + P Sbjct: 232 LLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 161/233 (69%), Positives = 196/233 (84%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVVDDD+RLR LL+R+L ++GF V++ +A QMDRLL RE F L+VLD MLP EDGLS Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 ICRRLR + PIIM+TA+G + DRI GLE GADDY+PKPFNP ELLARIRAVLRRQ Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E+PGAPSQ+ V++FG + L+L TR + RE + + LT+GEFAVLKALV HPREPL+RDKL Sbjct: 142 EVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 MNLARGRE+ AMERSIDVQ+SRLRR++E++PA RYIQTVWG+GYVFVPDG++ Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDGAE 254 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 96/237 (40%), Positives = 146/237 (61%), Gaps = 9/237 (3%) Query: 1 MQENY-KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M E+ +ILV DD+ ++R LL L ++G++ + +N + L E+FHL++LD+M+P Sbjct: 1 MSESMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 DGL+ C R+R SN +PII++TA+ EE+DRI GL+IGADDYI KPF+PRELLARI A Sbjct: 61 ELDGLTACMRIREFSN-VPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEAT 119 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR + ++EA G +++ R + + + + LT EF +L +++ + Sbjct: 120 LRRTHSFS----KEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKV 175 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 SR++L++ G EY R++D I LR + E YIQTVWG+GY F +G Sbjct: 176 FSREQLLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 137/241 (56%), Gaps = 6/241 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + +L+V+D+ ++R +L +L ++ F V +L + L++LD+M+PG Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG + CR++R S +PI+ +TA+GEE DR++G E+GADDY+ KPF+PREL+ R++A+L Sbjct: 61 LDGWTTCRKIREFS-EVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALL 119 Query: 121 RRQANELPGAPSQEEAV----IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 RR+++ P +E + F + L R+ + E + L+ E+ +L L + Sbjct: 120 RRRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNA 179 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE-DPAHPRYIQTVWGLGYVFVPD 235 LSRD L++ G E++ R++D + RLR + PA Y+ TV G GY F + Sbjct: 180 GRVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239 Query: 236 G 236 Sbjct: 240 P 240 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 143/233 (61%), Gaps = 3/233 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + K+L+VDD+ +R +LE L+ G+ V + ++ E+ L +E +++LD+M+P Sbjct: 12 ETKEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKL 71 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG +C+ +R S+ +PIIM+TA G+ DRI GLE+GADDY+ KPF+P+EL ARIRAVLR Sbjct: 72 DGYGVCQEIRKDSD-VPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLR 130 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + +I F ++L R++++++E + LT EF++L+ L+S +P S Sbjct: 131 RTNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFS 190 Query: 182 RDKLMNLARGR--EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R ++ G E R +DV ISRLR +E DP++P I T G GY+F Sbjct: 191 RADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 133/236 (56%), Gaps = 1/236 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + KIL++DD+ + L++ YL + GFQV + N L + L++LD++LP +G Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L +C+ LR + PI+ ++ K ++D+I+GL +G DDYI KPF+P EL+ARI A LRR Sbjct: 63 LELCQNLRKITES-PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRN 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 S + +++ ++ ++ +D+P+ LT EF +L L HP S Sbjct: 122 RILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLT 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 +L + G + R++ V IS LR+ +E+DPA+P+ I T+ G+GY ++ Sbjct: 182 QLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTAPES 237 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 134/235 (57%), Gaps = 10/235 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 IL+V+DD + L+ L + F + E R+ + L+VLDLMLP DGL Sbjct: 12 PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71 Query: 65 SICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 +C R+R Q S I+M+TAKGEE+DRI+GL GADDY+ KPF+PREL+AR+RA+LRR Sbjct: 72 EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFR----EDEPMPLTSGEFAVLKALVSHPRE 178 Q + + F+++L + R E + LT EF +L +S+P Sbjct: 132 QLRQGQPV----GQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGR 187 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +R +L+ G ++ ER +D I RLR+ +E DPA+P +I+TV GLGY F Sbjct: 188 VWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 87/237 (36%), Positives = 144/237 (60%), Gaps = 7/237 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +KILVVDD+ + +++ YL + GF V + + + + + E+ HL+VLDLMLP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C R+R+ S+ +PIIM+TAK EE ++I G+ +GADDY+ KPF+ REL+ R+RA+L Sbjct: 61 MTGEEVCNRIRAVSS-VPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALL 119 Query: 121 RRQANELPGAPSQEEAVIAF--GKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 RR + ++ F G ++++ + ++ + LT+ EF +L +S+P + Sbjct: 120 RRAYRDFSPMA----DILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQ 175 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 SR+KL+ A G Y +R++D I +R+ +E + P YI TV+G+GY F+P Sbjct: 176 VFSREKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPS 232 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 84/243 (34%), Positives = 130/243 (53%), Gaps = 11/243 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 I+V DD+ + + RYL +G +V N E+ RL L+VLDLM+P DGL Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C +R Q++ PIIM+TA+GEE DR++GL +GADDY+ KPF+PREL+ R+ +LRR Sbjct: 63 EVCDLIR-QTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAG 121 Query: 125 NELPGAPSQEE----------AVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVS 174 +P + + I + R + + + LT EF +L L Sbjct: 122 WRSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAM 181 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +P + SR +L+N + ++ V + RLR +E +P+ P +I+TVWG+GY Sbjct: 182 YPGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKLDN 241 Query: 235 DGS 237 G+ Sbjct: 242 KGN 244 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 100/233 (42%), Positives = 145/233 (62%), Gaps = 3/233 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + KILVVDD+ +R +LE LT G++V + +N E+ + +E L+VLD+M+P Sbjct: 3 NQKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKL 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG +C+ LR +S+ +PIIM+TA GE DRI GLEIGADDY+ KPF+P+EL ARIR+VLR Sbjct: 63 DGYGVCQELRKESD-VPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R +I+ G K++ R++++ +E + LT EF++L+ LVS EP S Sbjct: 122 RADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 182 RDKLMNLARGR--EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 R ++ G E R +DV ISRLR +E+DP++P I T G GY+F Sbjct: 182 RASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 135/233 (57%), Gaps = 9/233 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E +L+VDD+ +R L+ YL F N E+ ++L ++++D+M+P D Sbjct: 2 EKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G ++C R+R QS+ +PI+ +TA+G+E D++ GL++G DDYI KPF+P EL+ARI A++RR Sbjct: 62 GFTLCARIREQSD-VPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + Q+ ++FG ++ R++ + +P+ LT EF +L L H + SR Sbjct: 121 AYH-----NKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSR 175 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + L+ G +Y+ R++D I LR +++ +IQTVWG+GY F Sbjct: 176 EDLLAQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKFEVS 225 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ILVVDD+ LR +L YL ++GF V + + + E L+VLDLM+P G Sbjct: 3 TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 R +S P+I++TAK E+ D+I+GLE+GADDY+ KPFN REL+ARIRAVLRR Sbjct: 63 FLRAFAKESR-TPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E V+ L+ R + + LT EFA+L L++ P + SR L Sbjct: 122 TP-----LEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDL 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ G + ER+IDV I LR +E DP HP+YI+TV+G+GY F Sbjct: 177 LDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 109/235 (46%), Positives = 160/235 (68%), Gaps = 3/235 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++ Y +L+VDDD +LRALL +YL G++V ++ + E + + S +++LD+M+PG Sbjct: 1 MEQQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGL + R LR SN +P+IM+TAKGE+ DRIVGLE+GADDYI KPFNPRELLARI+AVL Sbjct: 61 KDGLEVLRDLRPHSN-VPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P + I L++ +++ E + + L+S EF +LKAL+ +P P+ Sbjct: 120 RRAKG--PENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPM 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +RD LM G++++A +RSIDV IS+LR + + P H I+TVWG GY+FV + Sbjct: 178 TRDDLMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 6/237 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ K+L+++DD + L++ Y+ + G+ S ++ E+ L ES ++LD+MLP Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +G +C+ +R + +PIIM+T KGE D I GL IGADDYI KPF+P EL+AR++ VL Sbjct: 61 LNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR E+ + F +++ + +E + + E + L +P++ L Sbjct: 121 RRTILS-----ESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVL 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +R +L++ G E++ R++DV I R+R + E A I T+ G+GY F + + Sbjct: 176 TRQQLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFEENSN 231 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 85/238 (35%), Positives = 136/238 (57%), Gaps = 7/238 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ +L+VDD+ + AL+ +L +G+ V + + R L E ++LD+M+PG Sbjct: 1 MERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G + RR+R +P++ +TA+ E+ D+I GL +GADD+I K P E++ARI+AVL Sbjct: 61 PSGYDVLRRIREN-RDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P AV+ FG+ +++ E+ + +P+ LT+ EF +L+ HPR+ Sbjct: 120 RRYRRGEPAP----RAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +R++L G ++ V I RLR +EEDPA+PRYI TVWG+GY F + Sbjct: 176 TREQLFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEARP 231 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 137/235 (58%), Gaps = 4/235 (1%) Query: 1 MQE-NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ ILV++DD + +L YL +G++V + E R HL+++DLMLP Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 DG +CR++R QS +PII+V+A+ ++D+I L +GADDYI KPF+P EL+AR+++ Sbjct: 69 KVDGFEVCRQVRQQS-EVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSH 127 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR ++E V++F +N R + + +P+ LT EF +L L P + Sbjct: 128 LRRYHRYN--GLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQV 185 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 S+++L N ++ + R++ V I +RR + + HPR+I TVWG+GY F+ Sbjct: 186 FSKEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 132/229 (57%), Gaps = 2/229 (0%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+VDDD ++ + + YL+++GF++ A + +L L++LD+ LP DG + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN- 125 CR +R+++ +PI+ ++ + +++D+I+G IG DDYI KPF+P L+A++++ +RR Sbjct: 66 CRIIRTKT-KVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKEL 124 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + FG+ ++ E+ RE +P+ L + EF +L L + S + L Sbjct: 125 SGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHL 184 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G++ R++ V IS LR+ +E+DPA P YI TV G+GY F Sbjct: 185 FDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 99/234 (42%), Positives = 146/234 (62%), Gaps = 3/234 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 +IL+VDDD +L L+ YLT G+ V S + + +L FH ++LD+M+P Sbjct: 8 STKIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKM 67 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG + ++LR QS+ +P++M+TA GEE DRIVGLE+GADDY+PK F+ RELLAR+RAV R Sbjct: 68 DGFEMLKQLRKQSD-IPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTR 126 Query: 122 RQANELPGAPSQE--EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 R + + + + G+ +++L R + +P+ LT E+ +L L P Sbjct: 127 RHRLSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARV 186 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 LSRD+L++ GR Y +RS+DV IS LRR + EDP +PR+IQTV +GY+F Sbjct: 187 LSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 5/232 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+E KIL+VDD+ + L+E YL + F V +AE+ + +E L +LD+M+P Sbjct: 69 MKE--KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPK 126 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 GL +C+++R + N PIIM+TAKG E+D+I GL +GADDYI KPF P E++AR++A L Sbjct: 127 ISGLELCKKIRERYNY-PIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 185 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR G EE ++ LN T E F + + LT EF++L L + Sbjct: 186 RRYKRYNMGTVKAEE-ILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVV 244 Query: 181 SRDKLMNLARGREYSA-MERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 S ++L + EY + +I V I LR +E+ +P+YI+TVWG GY Sbjct: 245 SAEELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYK 296 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 138/228 (60%), Gaps = 3/228 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+V+D+ L L L ++GF+ V + R +++LDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C++LR++S+ +P+IMVTA+ E+D++VGLE+GADDY+ KP++ REL+ARIRAVLRR Sbjct: 64 CKQLRARSS-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR--GA 120 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 ++ V+ G ++++ + EP+ L EF +L+ L+ + L+R +L+ Sbjct: 121 DNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLI 180 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G +Y +++DV + RLR +EEDPA+P ++ TV GLGY Sbjct: 181 DRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 145/233 (62%), Gaps = 6/233 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + IL+V+D+ ++ L YL GF+ + ++ R + +E+ L++LD+MLPG Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DG+ +C+ LRS S +PIIM+TA+ EE+DR++GLE+GADDYI KPF+PRE++AR++AVL Sbjct: 61 KDGMEVCKELRSFS-QIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P +E I G L+ +RE+ + LT EF +LK ++S P Sbjct: 120 RRS-----NTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVF 174 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SR++L++LA G ++ +R+ID I LR+ +++ I +++G GY F Sbjct: 175 SRNELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 2/231 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++N IL+VDDD + + L ++GF+V S N E+ +++ S L +LD+M+P Sbjct: 16 MEKNS-ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPH 74 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+ +CRR+R + + +PI+ ++AK +VD+++G GADDYI KPF+ E +AR++A L Sbjct: 75 MDGIELCRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQL 133 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A E I+ +++ +R + E + LT E+ +L + + Sbjct: 134 RRYTYFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVF 193 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + +++ ++ V I+RLR +EE+P P++IQ VWG+GY Sbjct: 194 TIEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYK 244 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 147/239 (61%), Gaps = 9/239 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL--TRESFHLMVLDLMLPGE 61 + +IL+++DD L L+ YL ++V ++ +L + L++LDLMLP Sbjct: 2 SKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDM 61 Query: 62 DGLSICRRLR----SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 DG+ +C+++R SQ+N +PI+M+TAKG+ DR++GLE+GADDYI KPF PRELLARIR Sbjct: 62 DGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIR 121 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 AVLRR P + + FG+ + + E+ +D+P+ LT+ +F +L +H Sbjct: 122 AVLRRHEQ--PNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAG 179 Query: 178 EPLSRDKLMNLARGRE-YSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + L+R++L + ++R+IDV ISRLR ++E++P P+ I TV G+GY F D Sbjct: 180 KVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 1 MQENYK-ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M N + LVV+DD + L+ L + F V + ++ + + ++L++LDLMLP Sbjct: 1 MATNARQALVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLP 60 Query: 60 GEDGLSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 DG ICRRLR + + PIIM+TAK EE D+++GL++GADDY+ KPF PRE LAR+ Sbjct: 61 TLDGWEICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVH 120 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 A+LRR + Q + + F + + + F E + + LT EF +L L + Sbjct: 121 ALLRRTTDYN-----QPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAG 175 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L R++L+ G EY R+ID I RLR+ + + ++QTVWG+GY Sbjct: 176 RTLKREQLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 109/234 (46%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + I +VDD +R L+ +YLT++G+++ VA+ ++ LL R+ L++LD+M+PG Sbjct: 1 MSSSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CR +RS+SN P++ ++A+ E++D I+GLE+G DDY+ KPFNPRELLAR++A+L Sbjct: 61 EDGLSLCRHIRSRSN-TPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREP 179 RR GA S E I FG++ LN RE+ + + L+ EF +L AL+ P E Sbjct: 120 RRATPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEI 179 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++RD+L+N GR +RSID QISRLRR +E DP +P YI+T WG GY FV Sbjct: 180 VTRDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 2/227 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +L++DD++ + L+E YL +G++V N ++ E H++VLD+M+PG DG Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C ++R N +PIIM++AK ++VD+I GL GADDY+ KPFNP EL+AR+++ +RR Sbjct: 63 VCMKIRKDYN-IPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVF 121 Query: 126 ELPGAPSQEE-AVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + + +I F +N ++ + + LT E+ +L L ++ S + Sbjct: 122 LNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAED 181 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + +Y ++ V I RLR +EE+P P+ I+TVWG+GY Sbjct: 182 IFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYK 228 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 137/229 (59%), Gaps = 1/229 (0%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+DD+ + LLE ++ + +V SV + + F L++LDL +P +G+ + Sbjct: 10 ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVEV 69 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CR LR N PIIMVTAK EE+D+++GLEIGADDYI KPF+ REL AR +AV+RR Sbjct: 70 CRELRKTKN-TPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + A + FG K+N+ R + E + + L+ EF +L L ++P SR +L+ Sbjct: 129 NQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELL 188 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ G +S E +++ I+RLR +E D +P YI T WG+GY F D Sbjct: 189 DVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 136/229 (59%), Gaps = 4/229 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Y +L+V+D+ + +E YL QG+ V +N + ++ ++ HL ++D+M+P DG+ Sbjct: 4 YNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGI 63 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++ +LR + P+IM+TAK EE+D+I+GL IGADDY+ KPFNP EL+AR+ + LRR + Sbjct: 64 TMVMKLRENYDF-PVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYS 122 Query: 125 NELP--GAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 L Q+ + + G +LN T+E+ + E + +T EF +L+ L+ +P S Sbjct: 123 KYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSA 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +++ E + ++ V + +R +E D +P+Y++ VWG+GY Sbjct: 183 EEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYK 230 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 146/234 (62%), Gaps = 7/234 (2%) Query: 1 MQ-ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ ++L+++D+ + +++ YL + ++ N ++ + ++SF ++LDLMLP Sbjct: 1 MEANKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G IC+R+R QS +PI+M+TAK EE DRI GL+IGADDY+ KPF+P+EL+AR+RA+ Sbjct: 61 DLSGEEICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAI 119 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 +RR NE A E + G K++L E +++DE + LT+ EF +L + + + Sbjct: 120 MRRTNNEGLKAHLIE---LNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKV 176 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SRD+L+ G +Y +R+IDV I LR +E + +YI TV+G+GY FV Sbjct: 177 FSRDELVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFV 228 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 132/232 (56%), Gaps = 6/232 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N KILVVDD+ ++R +L+ +L + F + ++ ++ + + L++LDLMLP G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C+++R Q PI+M+TAKG E D++ G GADDY+ KPF+ RELLARI+A+LRR Sbjct: 62 EEVCQKIR-QDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRS 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + A E V G+ K++ ++ LT EF +L L+ +P + +R+ Sbjct: 121 NQKAEKA---EIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTRE 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +L G EY +R+ID I +R+ + + + I TV+G+GY F D Sbjct: 178 QLAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 133/231 (57%), Gaps = 1/231 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++L+ DD+ + LL YL + G + S N + +++ + ++D+M+P DG Sbjct: 2 ARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGY 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + R++R + MP+IM++AK E D+I+GL++GADDYI KPFN E+LAR++A LRR Sbjct: 62 HLVRKIRENYD-MPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + E+ + GK +LN+ T +++E+ + LTS E+ +L L+ + + ++ + Sbjct: 121 KSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + + + +I V IS LR +E+D +P YI+T+ GLGY + Sbjct: 181 IFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 5/232 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + KIL+VDD+ + L+E YL + + V A++ + + L +LD+MLPG Sbjct: 1 MSD--KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPG 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 GL+IC+++R + + PIIM+T K EVD+I GL IGADDYI KPF P EL+AR++A L Sbjct: 59 TSGLTICQKIRDK-HTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR G Q E VI +N+ T E + ++ + LT EF++L+ L + + Sbjct: 118 RRYKKF-SGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVV 176 Query: 181 SRDKLMNLARGREYSA-MERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 S + L + G EY + +I V I LR + + +P+YI+TVWG+GY Sbjct: 177 SSELLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYK 228 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 88/235 (37%), Positives = 127/235 (54%), Gaps = 6/235 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 N ILVV+DD + + RYL G + A+ + DRL R L+VLD MLPG D Sbjct: 10 PNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVD 69 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL++C R R P++M+TA+ EE R+ L GADDY+ KPF+ +EL+AR++A+LRR Sbjct: 70 GLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRR 129 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 S + ++ TR++ P+ L + EF +L L HP SR Sbjct: 130 AYASGYRDCSPKN------GLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSR 183 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 D+L+ G ++ R+IDV + +LR +E DP P Y+ TVWG+GY F Sbjct: 184 DELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGPPR 238 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 92/231 (39%), Positives = 134/231 (58%), Gaps = 8/231 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 N ILVV+D+++L +E L +G+ V V + + L++LD MLPG Sbjct: 2 SNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGIS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL IC+RLR + +PII++TAK + DR+ GL+ GADDYI KPFN ELLAR+RA LRR Sbjct: 62 GLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 ++ ++ F LN TRE+FR + LT+ EF +L+ L+SHP++ LSR Sbjct: 122 -------NHEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSR 174 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D+++ G ++ I+V + LR +E + R IQTV G+GYV Sbjct: 175 DQILERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYVLR 224 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 134/234 (57%), Gaps = 4/234 (1%) Query: 1 MQENYK-ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M + + ILVV+DD+ + L L +G++V + ES L+VLD+MLP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +G + + LR + P+++++AKG E D+IVGL +GADDY+ KPF +ELLARI+AV Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR+ P A + + FG +++ R + R P+ LT+ EF +L ++HP Sbjct: 121 LRRRY---PSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRT 177 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +R++L++ A G Y R++D + +LR E DP PR+ TV GLGY F Sbjct: 178 FTREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 130/233 (55%), Gaps = 4/233 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+V+DD L L GFQV + ++ + R L++LD+MLPG DG S Sbjct: 3 TILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFS 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR + ++ +PI+++TA +E RI GLE+GA DY+ KPF+ ELLAR+RA+LR Sbjct: 63 VCRAVAKET-TVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR---W 118 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + V+ G +L+ +R ++ +D + L+ EF +L L+ + LSRD L Sbjct: 119 NERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 + G ++ R+IDV + LR +E DPA+P I+TV G+GY F + Sbjct: 179 LERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPATD 231 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 133/232 (57%), Gaps = 4/232 (1%) Query: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 L+VDDD +R L YL GF V + L + +MVLDLMLP DG + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 68 RRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANEL 127 +R + +P+IM+TA G+E DRI+GL+ GADDY+ KPF+PREL++R+RAVLRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRA---- 117 Query: 128 PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMN 187 AP+ E ++ +++ R + D+ + LT EF +L L SHP++ SR+ L++ Sbjct: 118 FLAPADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLD 177 Query: 188 LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 G ++ R++DV ++RLR+ + Y++TVWG GY FV A Sbjct: 178 RVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKARSA 229 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 322 bits (827), Expect = 7e-87, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 7/229 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+D+ ++R +L ++L ++GF+V A+ + ++ L+VLDLMLPG G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 +++R + N PII++TA+ +EVD+++GLE+GADDYI KPF+PREL RI+AVLRR Sbjct: 65 MKKIRQK-NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSR-- 121 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P ++ ++ +N E D + LT EF +L L +P + SR ++ Sbjct: 122 ----PHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHIL 177 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 G Y ER+ID IS LR +E I+TV+G+GY V + Sbjct: 178 ERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 5/235 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLP 59 M+ KILVVDDD + L+E +L +G++VR +A +L E L +LD+M+P Sbjct: 21 MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G DGLS+ +++R S+ +P+IM++AK ++D+IVGL GADDY+ KPFNP EL AR++A Sbjct: 81 GMDGLSMVKKIRETSH-IPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKAN 139 Query: 120 LRRQANELPGAPS---QEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 LRR G + + +I G +N TRE+ D+ LT E+ +L L S+P Sbjct: 140 LRRFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNP 199 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 S D + + ++ V I RLR +E D + + I+TVWG+GY Sbjct: 200 GRVFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYK 254 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 135/226 (59%), Gaps = 8/226 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVVDDD L +L L +G++ V++ + + +++LDLMLPG +GL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 IC+ +R+QS +PI+M+TAKG+ +D + GLE GADDY+ KPF P EL+AR+RA LRR Sbjct: 77 ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR--- 132 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + ++ G ++++ ++ R+ P+ LT EF +L AL PR+ +R+ L Sbjct: 133 ----GETGQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELL 188 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + G ++A R ++V + RLR +E DP P + TV G+GY Sbjct: 189 LEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 2/228 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL++DD+ + LL+ L +G V + N ++ E L+VLD+M+P DG Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDGYE 61 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR++R + PI+ ++AK E+DRI G +G DDY+ KPF+ +ELLARI A LRR+ Sbjct: 62 VCRKIR-DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + A++ F ++L +RE+ + P+ LT EF VL+ L HP + S++++ Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 G + ++ I +R +E YI+TVWG+GY + Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 140/234 (59%), Gaps = 8/234 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVVDDD + LL +L F V + +N E+ + + ++LD+M+PG Sbjct: 1 MN-AKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPG 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 E+G + CRR+R++S+ +PI+ ++A+ +VD+I GL +G DDYI K +P E++AR++AVL Sbjct: 60 ENGFAFCRRIRAKSD-VPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A+ P E ++ FG LNL TRE+ + + + LT E+ +L+ + HPR Sbjct: 119 RRSASNQPPT----ETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVF 174 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 S D+L++ + + ++ V +SRLR +E +P P+YI VWG+GY F Sbjct: 175 SYDQLLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 136/230 (59%), Gaps = 3/230 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+V+D++ + L+ L +GFQV + + + E F+L +LD+MLP DG Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + + +R +++ P+IM+TAK ++D++V +GADDYI KPF+ EL AR++AVLRR Sbjct: 63 VLQYIRRKTSK-PVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121 Query: 126 ELPGAPSQ--EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 +Q +E ++ G ++N T E+ + + L + EF +LK L P ++ Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ G+E+ + ++ V ISRLR +EEDPA+P+ +QTV GLGY V Sbjct: 182 QIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 102/243 (41%), Positives = 150/243 (61%), Gaps = 6/243 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVVDDD +RALL YL + GF+ S A+ +M R+L + L+VLD+MLPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +DGL++CR+LR++S +P+IM+TA ++ DRI+GLE+GADDY+ KPFNPREL+ARIR VL Sbjct: 61 DDGLTLCRKLRARS-ELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVL 119 Query: 121 RRQANELP----GAPSQEEAVIAFGKFKLNL-GTREMFREDEPMPLTSGEFAVLKALVSH 175 RR P I F + L+ + + + L+ E+ +L+ + + Sbjct: 120 RRARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKY 179 Query: 176 PREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 P +SRD+L++L +GR A +RSIDV +SRLR + ++ P+ I+TV G GY D Sbjct: 180 PNRVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATD 239 Query: 236 GSK 238 + Sbjct: 240 VER 242 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 130/230 (56%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+VDD+ + ++ +GF V + E L E++ L++LD+ LPG DG Sbjct: 2 QRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + R++R++ P+IM+TA+ +EVDR+VGLE+GADDY+ KPF+PREL+AR+RA+LRR A Sbjct: 62 GVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTA 121 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 +A +L+ R D + L EF +L L SHP + +R+ Sbjct: 122 EASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREV 181 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+ G + R++DV I RLR + E A IQT WG+GY F+ Sbjct: 182 LLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 131/229 (57%), Gaps = 6/229 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILV+DD+ +LR LL YL +GF V N + + L++LD+M+P GL Sbjct: 3 QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGL 62 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 R + PII++TAK E+ D+I+GLE+GADDYI KPFN RE++AR+RAVLRR Sbjct: 63 DFMRAWNKE-AETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSY 121 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 P A V+ G+ L + ++ + LT EF +L L++ P SR Sbjct: 122 KAQPQA-----DVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLD 176 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L++ G+ Y ER+IDV I LR +E DP +PRYI+TV+G+GY F Sbjct: 177 LLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 132/233 (56%), Gaps = 5/233 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E KIL++DD+ + LLE YL + + V A + L +LD+MLP Sbjct: 18 MSE--KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPD 75 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +G S+C+ +R + PIIM+TAK EE D+I GL +GADDY+ KPF P E++AR++A L Sbjct: 76 MNGFSLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134 Query: 121 RRQANELPGAPSQE-EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 RR PG +++ + +++ K LN+ T E + E + LT EF++L L+S Sbjct: 135 RRYKKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNV 194 Query: 180 LSRDKLMNLARGREYSA-MERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +S ++L + EY + +I V I LR + + P+YI+T+WG+GY Sbjct: 195 VSIEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 137/228 (60%), Gaps = 4/228 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+V+D+ L L L ++GF+ V + R +++LDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C++LR++S+ +P+IMVTA+ E+D++VGLE+GADDY+ KP++ REL+ARIRAVLRR ++ Sbjct: 64 CKQLRARSS-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + V+ G ++++ + + + L EF +L+ L+ + L+R +L+ Sbjct: 123 DSEM---SDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLI 179 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + G +Y +++DV + RLR +E DPA+P ++ TV GLGY Sbjct: 180 DRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 139/237 (58%), Gaps = 2/237 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 EN IL+VDD+ + +++R LT++GF +V + ++AE+ ++ +++ HL++LD+M+PG+ Sbjct: 2 ENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQ 61 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G + +R +N PI +TAK ++D++ G GADDYI KPFNP EL+ARI+A L+ Sbjct: 62 TGFDVSPEIRRHTNA-PIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLK 120 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R A + + + +F + E+ + E + ++ +L+ HP LS Sbjct: 121 RTYIHKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +D++ G ++ V I +LR +E+DP+ P YI T+ GLGY FVP+ ++ Sbjct: 181 KDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPNPAR 237 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 133/230 (57%), Gaps = 7/230 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ILVVDD+ +R + + YL G++V + ++ E L+VLDLMLPG DG Sbjct: 2 QPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + I RLR +S+ I+M+TA+ +E+DR+ GL +GADDY+ KPF+PREL+AR+ A+LRR+ Sbjct: 62 MEITARLREKSDVF-ILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRR 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + +V+ F +++ RE + + LT EF +L AL + LSR+ Sbjct: 121 RG-----KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSRE 175 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L+ G ++ +R +DV +S++RR +E I+T G+GY FV Sbjct: 176 DLIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 141/230 (61%), Gaps = 3/230 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILV +D+ +R+ + L G++V N + +++F +++LD+M+P DG + Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C + RS+ + IIM+TA+ E D+++GL +GADDYI KPF+P ELLARI+++LRR Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +E + G F+++LG + + + + +T E+ +L + + + +SRD+L Sbjct: 123 LRRRKQPRE---LVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDEL 179 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ G Y +++DV I RLR+ +EE+PA P++I+T+WG GY + + Sbjct: 180 LDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNE 229 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 134/233 (57%), Gaps = 6/233 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + ++LVVDDD +R ++ RYL G+ V + E RL L+VLDLMLPG Sbjct: 6 EAAARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGV 65 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 GL +CRRLR + +P++M+TA GEE DR+VGLE GADDY+ KPF+PREL+ R+ ++LR Sbjct: 66 GGLEVCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILR 124 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R P E V+ G +L+L R + + LT EF +L L+ HP S Sbjct: 125 RARTSQPA----EGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFS 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R +L+ G + ++ V + RLR VE DPA P I TVWG+GY + P Sbjct: 181 RAELLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 138/239 (57%), Gaps = 6/239 (2%) Query: 1 MQE-NYKILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLML 58 M + K+L++DD+ + L++ L +G +V + + A +E+ L++LD+ML Sbjct: 33 MSRLHSKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIML 92 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 P +G IC+++R S+ +PII ++AKGEE D+IVGL IG DDYI KPF+P+E+ R++A Sbjct: 93 PDGEGYDICKQIRDISH-VPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKA 151 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 LRR + PSQ +I G F+LN E+ + + + LT E ++ + HP Sbjct: 152 QLRRVSYL---QPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNR 208 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +S++ L G ++ + ++ V I RLR +E P+ P ++ TV GLGY FV + Sbjct: 209 VISKETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVVKDA 267 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 131/233 (56%), Gaps = 8/233 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 + VV+DD + L+ +L GF VR+ + + +L +LD+M+PG DG Sbjct: 2 KQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADG 61 Query: 64 LSICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 L ICR++R + P+I +TAK E D+I GL++GADDYI KPF+PREL+ARI+AVLR Sbjct: 62 LEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R LP A V+ G ++ G + + T+ EF +L+ L HP + Sbjct: 122 RFERPLPPA------VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFT 175 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 RD+L++ + RS+DV + R+R +EE+P PRY++TV G GY F Sbjct: 176 RDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 136/229 (59%), Gaps = 2/229 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+DD ++ + + YL GF+V A+ + ++ + L++LD+MLPG DG Sbjct: 2 KKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++CR LR + +P++MVTA+ EEVD + GL +GADDYI KPFNP EL+AR+R+ + R Sbjct: 62 AVCRELR-RYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 L E+ V+ G ++ L +F + + +P T EF +L L HP SR+ Sbjct: 121 RILASVK-PEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREA 179 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L G E ++ V I+R+R +EEDPAHPRY++T+ G GY F Sbjct: 180 LFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 139/231 (60%), Gaps = 5/231 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLT---RESFHLMVLDLMLPGEDG 63 I+VV+D+ L L+ER L E+G +V + + LT + L+VLDLMLP DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L ICRR+R QS PI+M+TA+ E+DR++GLE+GADDY+ KPF+ REL AR+ A+LRR Sbjct: 64 LEICRRVR-QSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 124 ANELPGAPSQEEAV-IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + +++ I G ++ +RE+ +P+ LT+ EF +L L ++P SR Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D L++ G +Y ++R++D I RLR+ + + I T+WG+GY + Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 146/236 (61%), Gaps = 4/236 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++ +IL+V+DD RL L + YL + G V + + R + E L+VLD+MLPG Sbjct: 7 EQTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGS 66 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL++CR +R + PI+M+TA+ E++D+++GLE+GADDY+ KP PR LLARIRA+LR Sbjct: 67 DGLTVCREVRPHYHS-PILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLR 125 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R N Q + FG+ ++ G R + E + TS E+ +L L S+ LS Sbjct: 126 RSENAPSEEIPQR---LEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILS 182 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 R+ + RG EY +RSIDV+ISR+R + +DP +P+ I+TV GY+FV +G+ Sbjct: 183 REDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEGN 238 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 139/235 (59%), Gaps = 7/235 (2%) Query: 1 MQEN---YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLM 57 M EN Y +L+++D+ L +L+ YL ++G+QV + + L +++ ++VLDLM Sbjct: 1 MSENTNCYTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLM 60 Query: 58 LPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 LP G I R++R + PI+M+TAKG E ++I GL IGADDY+ KP +PRE++AR++ Sbjct: 61 LPNMSGEEIARKIRKE-QETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLK 119 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 +LRR E ++ +I G+ ++ ++++ + LT EF +L L +P+ Sbjct: 120 TILRRVGKEP---GRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPK 176 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + SR+ L + G + R+ID I LRR +E++P P +I+TV+G GY F Sbjct: 177 KVFSRENLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 113/231 (48%), Positives = 167/231 (72%), Gaps = 1/231 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KI+++DDD ++R L+++YL +QGF + + + +D++L + + L++LDLMLP E+G Sbjct: 2 KKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L IC+RLR +PIIM+TAKG+EVDRI+GLE+GADDY+PKPFNPRELLARI ++ RR Sbjct: 62 LDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRH 121 Query: 124 ANELPGAPSQ-EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 EL ++ I F F+ N R + ++ + + LTSGEF++LK + + +PLSR Sbjct: 122 EMELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSR 181 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D++M LA+G+E +RSIDVQISR+R+++EEDP P+Y++T WG GYVF Sbjct: 182 DQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQ-VRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 EN IL+VDD+ + +++R L ++G++ + A+AE+ ++ L+VLD+M+ G Sbjct: 2 ENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGM 61 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G C +R S+ PI +TA+ + D++ G +GADDYI KPFNP EL ARIRA L+ Sbjct: 62 SGFEACTLIREYSDA-PIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + +Q + F + E+ E + ++ +L+ HP LS Sbjct: 121 RTYQSKETSSNQ---TYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLS 177 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +D++ G ++ V I +LR +E DP++P YI TV GLGY F+P+ Sbjct: 178 KDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPEG 234 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 137/232 (59%), Gaps = 6/232 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+++DD + +++ YL + F+V A+ E ++ L+++DLMLP DG ++ Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 C ++R+ S+ +PII+V+AK + D++ +GADDY+ KPF+P EL AR++A +RR Sbjct: 63 CEKIRA-SSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERS 121 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P Q+E + F ++++ R +F E + LT+ EF +L L +HP ++++L Sbjct: 122 YP----QQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELY 177 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 + R++ V + +R +++ HP+YI+TVWG+GY F+ G++ Sbjct: 178 AAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIGLGNR 228 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 134/230 (58%), Gaps = 2/230 (0%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 +N +L+V+D+ + +++ YL+ F V + L + ++LDL LP D Sbjct: 2 KNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCD 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ ICR++R SN + I++++A+G + D+++GL GADDY+ KPF+ EL+ARI A LRR Sbjct: 62 GIEICRKIREHSN-VAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Q L ++ V+ +N R+++P+PL++ EF +L L + + S+ Sbjct: 121 QDRWL-QDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++ G + E +I V I R+R +E +P+HP Y+QTVWG+GY F Sbjct: 180 SQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 128/230 (55%), Gaps = 5/230 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+++DD R+RA + LT+ G +V + L ++++DLMLP DG Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 CRRLR +S+ +PIIMVTA+ + D + GLE GADDY+ KPF +EL ARIRA+LRR Sbjct: 79 ECCRRLR-RSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSR 137 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A VI ++ + R E + LT EF +L L S P SR++ Sbjct: 138 ----SAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQ 193 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+ G +Y R +DV + RLR +EEDPAHPR + TV GLGY P Sbjct: 194 LLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 126/235 (53%), Gaps = 9/235 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +LVV+D+ L LL+ L ++G+ V + E + L+++D MLP G Sbjct: 2 KAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSG 61 Query: 64 LSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 + +CRRLR ++ +PIIM+TA+GEE DR+ GL+ GADDY+ KPF+ EL ARIRAVLR Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R P E VI G ++ + R D + L EF +L L+ HP S Sbjct: 122 RIR------PGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFS 175 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 R++L++ G + R++DV + RLR+ + + I+TV GY F + Sbjct: 176 REQLLDAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAFDVNA 229 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 3/234 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M KIL+ DD+ + + YL S + ++ E L++LDLM+P Sbjct: 1 MSSIKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C+ +R SN +PIIM+TAKGEE+DRIVGLEIGADDYI KPF+PRE++ RI+ + Sbjct: 61 IFGTEVCKEIRKISN-VPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIF 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR N + ++ F F ++L E+ E + +T E +L L ++ L Sbjct: 120 RRVGNANIDTNLNRK-LVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVL 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 SR+++++ G +Y R +D QI R+R+ + E+ I+TV+G+GY F Sbjct: 179 SREEILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKFEV 231 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 134/241 (55%), Gaps = 14/241 (5%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR-ESFHLMVLDLMLPGED 62 IL+VDD++ + LLE L +GF V S + E LL++ E +L++LD+M+P Sbjct: 2 KDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +C ++R + + +PI+ ++AKG+ VD++VG EIGADDYI KPF+ ELLARIRA LRR Sbjct: 62 GYELCSQIRREWD-LPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 123 QANELPGAPSQEE--------AVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVS 174 Q E V+ F +++ T ++ ++ + L++ EF +L L Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + +R+++ + G Y ++ V I LR +E ++I+T WG GYVF+ Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIG 236 Query: 235 D 235 + Sbjct: 237 E 237 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 7/235 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQ-VRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 KIL+VDD+ + LLE L ++GF+ + + + + + L++LD+MLP D Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G S+C ++R + +PI ++AK E++D+I+GL IG DDYI KPF+P+E+ +++A RR Sbjct: 70 GYSVCEQIRQFT-FVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRR 128 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + FG ++ + R + LT+ EF +L L+ +P + S+ Sbjct: 129 NQY-----KEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSK 183 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +L G Y + + V + LR +E++P+ P Y+ TV GLGY G Sbjct: 184 ARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKGD 238 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 4/228 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILV +D+ +R+ + L GF V N + RE F +++LD+M+P DG Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 C +R + IIM+TA+ E D+I GL GADDYI KPF+P EL+ARI+A+LRR Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVEK 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 ++ + G F ++L +++ + + + LT E+ ++ LV + LSRD L Sbjct: 123 ----VKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDAL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ G Y +++DV I RLR+ +E+DP+HP YI+T+WG GY + Sbjct: 179 LDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 135/232 (58%), Gaps = 5/232 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+E K+L+++DD +R L YL + ++V + + + ++ + HL++LD++LPG Sbjct: 1 MKE--KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPG 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G IC+++R S PII ++ K + D++ GL+ GADDY+ KPF+ EL ARI+A L Sbjct: 59 MKGYEICQKIRMLSEA-PIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANL 117 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR ++ + V + G +++L + ++F + + L + E +L LV + Sbjct: 118 RRSKMN--ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 S +K+ + G ++ +++ V IS LRR +EE+P+ P+ I+TV G GY F Sbjct: 176 SAEKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 5/237 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M N IL+ DDD R+ ++ L ++G++V + + EQ +L T ++++D+M+P Sbjct: 1 MN-NGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPK 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL ++++ + +PII+++AK + VD+IVG ++G DDY KPF+P EL R++AVL Sbjct: 60 LDGLEASQKIKMK-VDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + V+ + F + TR + + + LT+ EF +L + SHP + Sbjct: 119 RRSKAVPE---KKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 SR +L+ + E ++ V I RLRR +E D A P I+TVWG+GY F Sbjct: 176 SRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAPKE 232 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 133/233 (57%), Gaps = 7/233 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+++DD + L+ +G+ V++ + + +L L+VLDLMLP Sbjct: 1 MIHAETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPK 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +G ICR LR + MPIIM+TAKG+E D ++GL++GADDY+ KPF+ +ELLAR+ A L Sbjct: 61 VNGYEICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RRQ Q V FG + + R + R + +PL+ EF +L LV++ L Sbjct: 121 RRQRK-------QTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRAL 173 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SRD++M+ G + RSID ++ LR +E DPA PR ++TV GY F Sbjct: 174 SRDRIMSTVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 139/225 (61%), Gaps = 2/225 (0%) Query: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 ++V+DD + +++ YLT++GF + + E+ RL + S+ L++LD+MLP +G+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 68 RRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANEL 127 + +R +SN +P++M++AK +VD+ +GL GADDYI KPF+ EL AR++A +RR Sbjct: 61 KIIREKSN-IPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 128 PGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMN 187 P+ + VI + +++ + + EP+ LTS E+ +L S+P++ +++++ Sbjct: 120 AEEPAVNK-VIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYR 178 Query: 188 LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 EY + I+V + RLR +E+DP+ P+YI+T+WG+GY Sbjct: 179 SVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 135/231 (58%), Gaps = 10/231 (4%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N +L+V+D++R+R L+ Y ++GF V ++ E+ R+ + L +LD+M+P DG Sbjct: 2 NKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L++CR +R SN PII++TAK +E D+++G E+GADDY+ KPF+P+ LLA+ +A+LRR Sbjct: 62 LAVCRNIREVSN-TPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 ++ ++ F +N + E+ E + L+ E+ +L L S+ LSRD Sbjct: 121 GTL------NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRD 174 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 ++++ G +Y R++D I RLR + + YI TV G GY F Sbjct: 175 RILDNVWGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFEV 222 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 4/231 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M N IL+VDD+ +R LLE L +G+ V E+ ++L +E HLMVLD+M+P Sbjct: 1 MNNN--ILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPD 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C ++R + N +PI+M++AKGE++D+I G+ GADDY+ KPFN EL RIRA+ Sbjct: 59 MDGFEVCSKVRERYN-IPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALF 117 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR L + +I ++ ++ + + LT+ EF +L L ++ Sbjct: 118 RRTY-FLNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVF 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 S +++ +Y ++ V +SRLR +E+ + I TVWG+GY Sbjct: 177 SAEEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYK 227 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 136/235 (57%), Gaps = 7/235 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M++ +IL+VDD+ L L++R L ++GF ++R+ + + HL +LD+MLP Sbjct: 1 MEQ-PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLP 59 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +G +C+++R+QSN +PI+ ++AK EEVD+++GL IG DDYI KPF+P+E+ R++A Sbjct: 60 DGEGYQLCQQMRAQSN-IPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQ 118 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR + G F++N E++ E + LT+ E +L + +P Sbjct: 119 LRRVSMMEAPVAETT----TVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRI 174 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 LS++ L G + + ++ V I RLR VE +P+ P YI+TV GLGY Sbjct: 175 LSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 39/264 (14%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+V+D+ + L++ YL+++GF+ + + L++LDLM+PG DGL + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 67 CRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 C R+R Q+ I+M+TA+GEE+DRI+GL GADDYI KPF+PREL+AR+RAVLRR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMF------------------------------- 153 Q F ++L R Sbjct: 123 R----GSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQ 178 Query: 154 --REDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRM 211 P+ LT EF +L +S+P +R +L++ G ++ ER +D I+RLR+ Sbjct: 179 LEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKK 238 Query: 212 VEEDPAHPRYIQTVWGLGYVFVPD 235 +E DP+ P +++TV G+GY F + Sbjct: 239 IEPDPSAPTFVKTVVGVGYRFEDE 262 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 153/239 (64%), Gaps = 2/239 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVV+DD R+L+ +YL G V + A+ +M R++ L+++DLMLP Sbjct: 11 MVAIPSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPD 70 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CR++R++S +PIIM+TA+GE++DRIVGLE+GADDY+ KPFNPRELLARI AVL Sbjct: 71 EDGLSLCRKVRARS-QVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVL 129 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREP 179 RRQA+ L + + +F ++++ RE+ + LTS EF +L+A Sbjct: 130 RRQASALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRV 189 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 LSR+ L+ L +G + +RSIDV +SR+RR +E DPA I+TV GY+F P Sbjct: 190 LSREVLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTPVVEP 248 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 141/238 (59%), Gaps = 4/238 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E ++L+V+DD + + E YL GF + ++ LL +ESF L++LDLMLPG Sbjct: 1 MAEKRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 + G ICR +R Q +PI+MVTA+ E VD+I GL +GADDYI KPF+P EL+AR+ A L Sbjct: 61 KSGYDICREIREQ-VDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANL 119 Query: 121 R---RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 R R ++P ++E I ++ + + ++++ + + + EF +LK L +P Sbjct: 120 RQYDRMMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPN 179 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 SR++L G +Y ++ V I+R+R +E+D +P+ ++TVWG GY F D Sbjct: 180 IVFSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 137/234 (58%), Gaps = 8/234 (3%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 I V++DD + LL ++GF VRS N + + +E ++VLDLM+P DGL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 67 CRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 C+ +RS +P+IM+TAK E+D+IVGLE+GADDY+ KPF+ RELLAR++A+LRR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + E FG K++ E+ + +P+ LT+ +F +L ALV+ + LSRD Sbjct: 124 SLHFPTAKPE---YKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 ++ + +R+IDV I +LR +++E I+T+ G+GY + + + Sbjct: 181 IIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKWECEPTP 231 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 145/233 (62%), Gaps = 2/233 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KILV+DD++ +R L E L +GFQV++ N + L L++LDLMLP G Sbjct: 2 KKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGY 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +C+ + QSN +P+IMV+AK E +D+++GLE+GA+DYI KPF+ REL+ARI+ VLRR Sbjct: 62 DLCKEIVKQSN-IPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A + + G+ ++N T+ + + + LT+ E+ +L+ L P++ +RD+ Sbjct: 121 -HNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDE 179 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 L+ + G +YS RS+D+ I RLR+ +EED P+Y++T++G GY D + Sbjct: 180 LLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDST 232 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 142/237 (59%), Gaps = 4/237 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ ++ ILV DD+ ++ +L YL + GF V V N ++ R L L++LDLMLP Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G +C +R++S +PI+M+TAK + DR+ GL+IGADDY+ KPFNP E++AR++A+L Sbjct: 61 IPGEEVCMAVRARS-AVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAIL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + P A E G ++ ++ +++ LT+ E+ +L L HPR Sbjct: 120 RRTMLDHPLADRLE---YRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVF 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 SR++L+ G ++ R+ID + LR +E+DP P YIQTV+G+GY F DG+ Sbjct: 177 SREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDGN 233 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 145/243 (59%), Gaps = 9/243 (3%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 E ++IL+V+DD RL L + YL G V N + + E L+VLDLMLPGE Sbjct: 23 NEAWRILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGE 82 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGLSICR++R N PI+M+TA+ +++D+++GLE+GADDY+ KP PR LLARIRA+LR Sbjct: 83 DGLSICRKVRPSYNG-PILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLR 141 Query: 122 RQANELPGAPSQE--------EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALV 173 R + A + F ++ RE + ED+ + LTS EF +L L Sbjct: 142 RVKEQGEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLA 201 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 S LSR+++ RG EY +RSIDV++SR+R + +DP HPR I+TV GY+FV Sbjct: 202 SSAGRVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFV 261 Query: 234 PDG 236 + Sbjct: 262 KEA 264 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 132/235 (56%), Gaps = 4/235 (1%) Query: 1 MQEN--YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML 58 M+ N IL++DD+ ++R LL YL GF N + + L++ D+M+ Sbjct: 6 MEGNTIKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMM 65 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 P DG + +++R S +P + ++AK +++D+I+GL++GADDY+ KPFNP E+++R++A Sbjct: 66 PMMDGYELLKKIRHIS-EVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQA 124 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 + RR G Q +I G L+L + ++++ + +TS EF +L L+ H Sbjct: 125 LFRRMDVFSKGEK-QNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGR 183 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ + G+EY E I V IS+LR +E++P P Y+ T+ GLGY F Sbjct: 184 VFTKASIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFE 238 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 140/228 (61%), Gaps = 3/228 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 + +VV+D++ L A++ YL G++V + + L +++LDL LPG DG+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR+ S+ ++M+TA+ +EVD ++GL +GADDY+ KPF+PRELLAR++A+LRR Sbjct: 125 VCRRLRTFSDCY-VVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRP 183 Query: 126 E--LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + ++ FG +++ RE++ DE +PLT EF +L L PR SR Sbjct: 184 KTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRR 243 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +L++ G ++ E +DV I LRR +++D + +Y++TV G+GY Sbjct: 244 QLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYR 291 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 2/228 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+V+DD+ + L + YL F+V+ + + + L++LD+MLP DG Sbjct: 2 KKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 I R + + +P++MV+AK EE+D+I GL +GADDYI KPF+P EL+AR+++ ++ Sbjct: 62 DILRII-HDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 125 NELPG-APSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + VI+ ++N +R++ D+ + L EF +L + +P +D Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKD 180 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +L G + ++ V I R+R +E +P+ P+YI+TVWG+GY Sbjct: 181 ELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYR 228 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 E IL+V+D+ ++ +L+ L +G+ V N + + L++LD+MLPG Sbjct: 2 EKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL + RRLR + P+I++TA+ D++ GL+IGA+DY+ KPF ELLARIRA LR Sbjct: 62 GLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR- 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + + ++N TRE+ R D+ + LT EF +L ++ HP++ L+R Sbjct: 121 ---QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +++++ G +Y +DV I +R+ + + P + I T+ G+GY Sbjct: 178 EQILSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 131/228 (57%), Gaps = 7/228 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++LVV+DD + + YL GF V + + R L+VLD MLPG DG Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRR+RS+ + +PII++TA G +RI GLE GADDYI KPF+PREL+ R++++LRR Sbjct: 101 VCRRIRSRGD-VPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +L EA G+F L+ + R E + LT+ EF +L L+ HP + SR++L Sbjct: 160 DLTP-----EATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQL 214 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + G E+ ++ V + RLR +E DP HP + TVWG+GY Sbjct: 215 LKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 140/227 (61%), Gaps = 4/227 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ +R L+ +L++QG+ + N ++ + + SF L++LD+M+P DG Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C +R ++ +PI+M+TA+ E D++ GL+IGADDY+ KPF P EL+AR+ A+LRR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Q + F + K+++ ++F +D P+ LT EF +LK L+ +P++ +RD+L Sbjct: 124 NQTTQTKQ----LHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQL 179 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + G ++ ER++D I +R ++++ I+TVWG+GY Sbjct: 180 LLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 142/230 (61%), Gaps = 5/230 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+++D++ +R L+ L +G++V + A+ E+ + + E L++LD+M+P DG Sbjct: 2 ARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 ++C LR +NP+PI+M+TAKG+ DR+ GL+ GADDY+ KPF+ ELLAR+RA+LRR Sbjct: 62 ALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQ 121 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 E + FG+ ++++ + R + + T+ E+A+L+ L P EP+SR++ Sbjct: 122 REKRAVA-----TLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRER 176 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +++ G R++D I+ LR +E DP PR+I+TV G+GY Sbjct: 177 FLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +ILVVDDD L ++ L GF+ A+ Q + L++LDLMLPG DG Sbjct: 31 KARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDG 90 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +CR++R +S+ +PI+M+TAK + D + GLE GADDY+PKPF P EL+AR+RA LR Sbjct: 91 IEVCRQIRGESD-VPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR-- 147 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + +++ + R E + LT EF +L AL P + +R+ Sbjct: 148 -----PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRE 202 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 L+ G ++A R ++V + RLR +E DP P + TV G+GY Sbjct: 203 LLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +Y ILVV+D+ + +E YL QG+ V N + +++ + HL ++D+M+P Sbjct: 1 MN-SYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPK 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+++ RLR N P+IM++AK EEVD+I+GL IGADDY+ KPF P ELLAR+ + L Sbjct: 60 MDGITLTMRLRENYNF-PVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQL 118 Query: 121 RRQANE------LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVS 174 RR +++V A G +LN T+E+ + + + T EF +L L+ Sbjct: 119 RRYTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMR 178 Query: 175 HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 + S D++ + ++ V + +R +E DP +P+Y++ VWG+GY Sbjct: 179 NAGRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYK 234 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 130/234 (55%), Gaps = 8/234 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVV+DD L +L + L +G+ V + L L++LDLMLP Sbjct: 1 MNNP--ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPR 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 GL +C+RLRS++ PIIM+TA+G + D++ GL +GADDY+ KPFN ELLARI AVL Sbjct: 59 MSGLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P ++ G +++ + + + + L+S EF VL+ L + + Sbjct: 119 RRTHQSKPSQH------VSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTV 172 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R+K+ G + + R+ID I+RLR +E++P PRYI TV G GY FV Sbjct: 173 DREKIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVV 226 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 137/229 (59%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILV +DD +R L L +G+ V + + + R+ SF L +LD+M+PG +G Sbjct: 5 RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR + + IIM+TAKGEE+D+++GLE+GADDYI KPF EL ARI AVLRR Sbjct: 65 VCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSRR 124 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 PGA + + +A G ++ T LT+ E +L+A HP E L R+ L Sbjct: 125 TAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPRNTL 184 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +NLA G +Y R++D I++LR+ +E DPA P+ I TV G+GY +V Sbjct: 185 LNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYVA 233 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 5/230 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 I++VDD+ LR + + YL +G+ + E+ L+ L++LD+ +PG DGL Sbjct: 2 QTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGL 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR +RSQ +P+I ++ + +D++ E+GADDY+ KPF+ EL ARI+A +R Sbjct: 62 EVCREIRSQ-LSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIR--- 117 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 PS E + +G ++ + E E + LT+ E +L HP + + ++ Sbjct: 118 -MYAMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQ 176 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L + + + ++ V IS LRR +E P P YIQTV G GY FVP Sbjct: 177 LYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 1 MQENY-KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ +L+++DD + L++ Y+ + G+ + + E + LD+MLP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 DG +C+ +R + +PIIM+T KGE D+I GL+IGADDY+ KPF+P EL+AR++AV Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 +RR E+ V++ ++ + D+ + + E +L L S+P + Sbjct: 121 MRRADLLN-----DEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQV 175 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R +L++ G + R+IDV I R+R + E A I+T+ G+GY F Sbjct: 176 FTRQQLLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 2/230 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ++K+LV++D+ L LL LT++G+ + + + + +F L++LD+MLPG +G Sbjct: 2 SHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 I RLR PII++TA+ E + + GL+ GADDYI KPF ELLAR+ AVLRR Sbjct: 62 FEILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + E VI G + E+ E +PL EF VL LV P ++RD Sbjct: 122 QQDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRD 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 LMN+ G +Y +R++DV +S LR+ +E I+++ G+GY V Sbjct: 182 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKLV 229 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 4/233 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + IL+VDD+ + + L + G+QV + N + + + + L VLD+M+PG Sbjct: 3 DQPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGM 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 +G +CR LR+++N P++ ++A+ E+D++VGLEIGADDY+ KPF REL+AR+RA+LR Sbjct: 63 NGYELCRNLRTRTNA-PVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + + I G L+ + + LT EF +L AL+ + S Sbjct: 122 RGQMDAEPMAGES---ITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVAS 178 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R+ L+ A G EY +++D I RLR + P I+TV G GY F Sbjct: 179 REDLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 120/230 (52%), Gaps = 3/230 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 ++LVVDD+ L ++ YL GF R Q R S ++VLDL LP Sbjct: 38 TPPGRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPEL 97 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL +CRR+R+ S+ I+M+TA+G E D+I GL +GADDYI KPF+ REL+ R+ AVLR Sbjct: 98 DGLEVCRRIRTFSDCY-ILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLR 156 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R P Q + G L+ ++ + + LT EF +L AL P + L+ Sbjct: 157 R--PRTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLT 214 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 R L+ + ER +DV I LRR + D +I TV G+GY Sbjct: 215 RHDLVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 5/237 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ++IL+V+D+ +R L+ + ++V + + E+ HL++LD+MLP + Sbjct: 2 QQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +CR +R + IIM+TAK EE ++ GL++GADDY+ KPF+ ELLAR++A LRR Sbjct: 62 GFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRR 121 Query: 123 QANELPGAPSQE---EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 + P+++ I F L+ + P+ L++ EF +LK E Sbjct: 122 IDLQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEV 181 Query: 180 LSRDKLMNLARGR--EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + R+ L+ G E R+ID I LRR +E+D A+P+ I ++ G GY F Sbjct: 182 VLREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 134/236 (56%), Gaps = 3/236 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 ++LVVDD+ +R LL YLT +GF+V+ N + + F +++LDLMLP D Sbjct: 12 PKLQVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMD 71 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +C+++R + + + I+M+TA+ E D++ GL IGADDY+ KPF P ELLAR+ +++RR Sbjct: 72 GWQVCKKIREK-DHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRR 130 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 A + + ++EA + F ++ RE+ D + T EF + +L + SR Sbjct: 131 SA--ITQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSR 188 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 ++L+NL G EY R +D I +R ++ IQTVWG+GY F G+ Sbjct: 189 EELVNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNGAGTS 244 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 136/230 (59%), Gaps = 4/230 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + +I +V+D+ R+ L+ L +GF+ N + + + +F L++LD+MLPG Sbjct: 1 MDKPVRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG++IC+R+R S+ +PIIM+TAK E D++ GL+IGADDY+ KPF EL+ARIR L Sbjct: 61 MDGMTICKRVREVSS-LPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNAL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 R+ + G P +E + + E+ + E + LT E+++L+ ++ + R L Sbjct: 120 RKHVPDNGGVPLEE--RLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVL 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 +RD+++ G +YS +DV I LR + +D H +YI TV G+GY Sbjct: 178 TRDQILEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 140/234 (59%), Gaps = 7/234 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + ILVVDDD + LL +L F V++ +AE+ + + MVLD+M+PG Sbjct: 1 MSGDNTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 ++G +CRR+R++S +PI+ ++A+ ++VD+I GL +G DDYI K +P E++AR++AVL Sbjct: 61 QNGFELCRRIRAESP-VPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A P EE V+ +G+ +LNL TRE+ + + LT EF +L+ HPR Sbjct: 120 RRSATRRPM----EERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + D+L+ + +I V +SRLR +E DP P+++ VWG+GY F Sbjct: 176 TYDQLLAKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 3/233 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 KIL+VDD+ + +L L ++ F + + N + L+ F +++LD+MLP Sbjct: 15 RTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDI 74 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG +CR++R+ +N PI+ VTA+ ++D++ GL IG DDYI KPFNP E+ ARI LR Sbjct: 75 DGFELCRQIRNYTN-TPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLR 133 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 RQ ++ + F F L + +EP+ T+ E +L L +HP + Sbjct: 134 RQHMTQEPNNGEKLN-LHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFT 192 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 ++L G ++++ + IS+LR+ +EE+P P YI + G+GY F+P Sbjct: 193 AEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIP 245 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 3/238 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ++LV++D+ L LL LT +G++V + + R+ F L++LDLMLPG +G Sbjct: 2 TQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 I +LRS+ P+I++TAK E + + GL+ GADDYI KPF ELLAR+ AVLRR Sbjct: 62 FEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRS 121 Query: 124 --ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 E Q+ + I G + E+ EP+ L EF VL L P ++ Sbjct: 122 TGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMT 181 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 RD LMN G +Y +R++DV +S LR+ +E DP +I ++ G+GY V + +A Sbjct: 182 RDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-QSVHIDSIRGVGYKLVVNKKQA 238 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 16/242 (6%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQG-FQVRSVANAEQMDRLLTRESFHLMVLDLMLP 59 M+ + I++++DD + + L ++G F V E R + +L++LD+ LP Sbjct: 1 MKRS--IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLP 58 Query: 60 GEDGLSICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 +G ICRRLR + + +PIIM+TA+ +E D+I GL +GADDYI KPF+ REL+ARI Sbjct: 59 LMNGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARIN 118 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 AVLRR +V G ++ + + + + LT EFA+LK L Sbjct: 119 AVLRRTEGTP-------SSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKG 171 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 L+R+ L++ G +Y R++DV I R+R+ + D YI+T G+GY FV G Sbjct: 172 RVLTREYLLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVEAGK 227 Query: 238 KA 239 +A Sbjct: 228 QA 229 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 101/236 (42%), Positives = 151/236 (63%), Gaps = 8/236 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ++L++DDD RL ALL YL GF VR+ A+ R L + L++LD+MLP D Sbjct: 14 DPTRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTD 73 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL++CR +R+ S +PIIM+TA+G+ DRIVGLE+GADDY+PKPF PREL+ARI+AVLRR Sbjct: 74 GLAVCREVRADSR-IPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR 132 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + G ++N TR + + LT+ EF +L L + +SR Sbjct: 133 GTR-------DDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSR 185 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 D++++ RG ++ A +RSID+ +SRLR+ + +DP P +I+TV G+GY F+ G + Sbjct: 186 DRILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGGRE 241 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 122/237 (51%), Positives = 163/237 (68%), Gaps = 3/237 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQM-DRLLTRESFHLMVLDLMLPGE 61 +ILVVDDD ++ LL RYL EQGF VR V + +M L L+VLD+MLPGE Sbjct: 13 NAPRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGE 72 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGLSI RRL ++ P P+IM++A+GE++DRIVGLEIGADDY+PKPFNPRELLARIRAVLR Sbjct: 73 DGLSIARRLDPKTRP-PVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLR 131 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R P A +++ I G F ++ TR+ F D + LT GE+ +L+ + P ++ Sbjct: 132 R-QRMEPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVIN 190 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 RD++M+ +G E SA +RSIDV+I+RLRR +E +P PRY+ T+WG GY+F P G Sbjct: 191 RDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSGRS 247 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 136/233 (58%), Gaps = 5/233 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ +IL+V+D+ L ++ LT F+V A+ Q + LL + L++LD MLP Sbjct: 17 MEGAVQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPD 76 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL +C++LR+ MP++++TA+ E D ++GLE GADDY+ KPF+ EL AR +A+L Sbjct: 77 GDGLLLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALL 136 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + P +I F +++L +RE+ D P+ LT+ EF +L L HP++ Sbjct: 137 RRHLSAAPT-----RQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVF 191 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SR +L++ G + E +++ I+RLR + P +QTVWG+GY F Sbjct: 192 SRTQLLDAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFT 244 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 136/235 (57%), Gaps = 1/235 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL++DD+ + L+ + G+ + + + RE+ L+++D+M+P DG Sbjct: 2 KKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + CR +R + P+I ++AKG+ VD+ VG + G DDY+ KPF+PRELL I A LRR Sbjct: 62 TTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRA- 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + + ++ G+F L+ G + ++ E + LT EF + AL S P LS+++ Sbjct: 121 SMAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQ 180 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 L+ A G+E+ SI V I +LR VE+DP+ PR IQTVWG+GY F P+G + Sbjct: 181 LVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEGREG 235 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 134/237 (56%), Gaps = 2/237 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++ KIL+V+DD + +++ YL ++GF V + + + L++LDLMLPG Sbjct: 1 MKDK-KILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPG 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C+++R S PIIM+TAKG+ +++ GL IGADDY+ KPF ELLARI A+L Sbjct: 60 LDGYQVCQKIRETSY-TPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAML 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + +E + + ++ ++ ++ + + E +LK L+ +P + Sbjct: 119 RRIEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 R++L+ G ++ +R ID+ I RLR+ ++ I+TVWG+GY F + S Sbjct: 179 KREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVEKS 235 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 139/232 (59%), Gaps = 5/232 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 IL+ DD+ + +L Y ++ A+ E+ R+ + + +++LD+M+P EDG Sbjct: 2 QHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGY 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR++R++S+ +P+I++TA+GE+ ++I+GL+IGADDYI KPF+P E++ARIRA+LRR Sbjct: 62 EVCRKIRAKSD-VPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 + S E V++ ++NL + + LT E + L S+P + +RD Sbjct: 121 KKENEQTS--ENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDN 178 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRY-IQTVWGLGYVFVPD 235 L++ G +Y R++D I RLR + + HP + I+T+WG+GY F D Sbjct: 179 LLDSLWGFDYFGDSRTVDSHIKRLRAKL-DMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 155/239 (64%), Gaps = 3/239 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 IL+V+DD + L+ RYL +V ++ +MDRLL L+VLDLMLPGE Sbjct: 15 TSTPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGE 74 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGLSICRRLR+QS MPI+M+TAK EE+DRIVGLE+GADDY+ KPFNPRELLARIRAVLR Sbjct: 75 DGLSICRRLRAQS-TMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLR 133 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPL 180 R + + F F L+ G R++ + + LT+ EF +L A+ P L Sbjct: 134 R-GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVL 192 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 SRD+L++L +GR ERSIDV +SR+R+ +E D +P I+T+ GYVF P+ S+A Sbjct: 193 SRDQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVSRA 251 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 133/232 (57%), Gaps = 4/232 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +IL+ +DD L L L +G+ V S + + +S+ L++LD+MLP G Sbjct: 2 TPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +C++LR +PI+M+TA+GE VD++VGL+ GADDY+ KPF ELLARI A+LRR Sbjct: 62 FDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRA 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P S G ++ E+ R +P+ L++ E+ +L L+ H E ++R+ Sbjct: 122 ----PVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTRE 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 L+ G + R++DV ++ LR+ +EE+P +PRY+QTV GLGY + Sbjct: 178 DLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 130/232 (56%), Gaps = 8/232 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 ++V++D++ + L LT +G +V + +++ + L++LDLMLP DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CRRLR+ S +PII++TA+GE +R+ GL++GADDYI KPF+ ELLAR+ A+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P V+ LNL TRE+ + LT EFA+L+ + HPR +R L Sbjct: 138 SRPVT------VLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTL 191 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 ++ G Y ++V IS LR + + + I+TV+G+GY PD Sbjct: 192 LSRVWGFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLRPDDE 241 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 140/227 (61%), Gaps = 6/227 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 YKILVV+DD +++ L L + + + E RE+F L++LDL LP +DG Sbjct: 2 YKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 S+ + ++++ +P+I++TA+GEE+D+I G +G DDY+ KPF+P EL+ RI+AVLRR Sbjct: 62 SVLKEIKNR-EDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 EE ++ +GK +NL TRE+ + EP+ LTS E+A+L+ L +P ++++ Sbjct: 121 KGR-----GEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQ 175 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 +M+ + + V + RLR +EEDP+ PR I+TVWG+GY Sbjct: 176 IMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 6/234 (2%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +ILV DD+ +R +L LT +G++V + ++ +L S L+VLD+M+P +G Sbjct: 2 QTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMNG 60 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 C +LR SN +PI+ +TAKG + D+ +G GADDY+ KPF+ EL AR++A+LRR Sbjct: 61 YQTCLKLRETSN-VPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRY 119 Query: 124 A---NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 + E ++ L + + + LT EF +L L+ +P++ Sbjct: 120 QVYKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIF 179 Query: 181 SRDKLMNLARGREYSAM-ERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 S ++L A Y +I V I LR+ +E+DPA+P YI+T+WG GY F Sbjct: 180 SAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 133/237 (56%), Gaps = 12/237 (5%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+ DDD +R LL YL +G++VR + + + L++LD+M+P DG + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 RR+R S +P+IMV+AKG++ D+I+GL++GADDY+ KPFNP E LAR+R+ LRR Sbjct: 71 LRRVRETS-ALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGM 129 Query: 127 LPGAPSQEEA---------VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 GA + + V++ L+L + R DEP+ LT EF +L +SHP Sbjct: 130 PAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPG 189 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 ++ ++ G EY A ++ V IS+LR + +DP YI TV GLGY Sbjct: 190 RVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 130/240 (54%), Gaps = 7/240 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + ILVV+D + L +L R L+ G+QV A+ L + L++LD MLP Sbjct: 3 EHVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQL 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DGL + R +R Q+ P++M+TA+ EE D +VGLE+GADDY+ KPF REL+AR+RA+LR Sbjct: 63 DGLEVLRTIR-QTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLR 121 Query: 122 RQANELP---GAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 R V+ +G L+ + + + LT EFA+L L+ +P Sbjct: 122 RDQRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGR 181 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 SR+ L++ G+ Y +RS+D + RLR+ + + I+TVWGLGY + + Sbjct: 182 AFSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEAPR 238 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 131/229 (57%), Gaps = 9/229 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVV+D+ +R ++ L + GFQ + + L L++LD MLPG G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 66 ICRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + L+ +S +P++M+TA+GEE DR+ GLE GADDYI KPF+P+EL+ARI+AV+RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 +P E VI L+ + + +EP+ + EF +L ++HP SR+ Sbjct: 124 ------SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L+N G +R++DV I RLR+ +E H R +QTV G GY F Sbjct: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 3/231 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 ++LVVDD+ + L+ L GF V + A ++ + L++LD+MLP D Sbjct: 19 RAPRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDAD 78 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +CRRLR+ + ++ +TA+ D+I GL G DDYI KPF EL+AR+RAVLRR Sbjct: 79 GFEVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRR 138 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 P PS ++ + +L+ + R D+P+ L+ EF++L+ + +P LSR Sbjct: 139 TRRPAP-EPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSR 197 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +++ R++ +D +S LRR + + P I T G GY Sbjct: 198 AQILAAVWDRDFDGEPTVVDQYVSYLRRKLGQHG--PPLIHTQRGFGYALR 246 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 150/234 (64%), Gaps = 4/234 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESF-HLMVLDLMLPGED 62 ++IL++DDD L+ALL Y E +V + + + ++VLD+MLP D Sbjct: 2 THRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDID 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +++R+ S +P+IM+TA+ ++ DRI+GLE+GADDY+ KPFNPRELLARI+AVLRR Sbjct: 62 GFETLKKIRAIS-QVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR 120 Query: 123 QANELPGAPSQEEAV--IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 AP + + FG +++ R + + + +T E +L AL+SH PL Sbjct: 121 ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 +RD+L++LA GR++ +RSIDV ISR+R+ +E+DP+ PRYI+TVWG GY++ Sbjct: 181 TRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 10/239 (4%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR--ESFHLMVLDLMLPGE 61 +L+++DD L L+ YL ++V+ A + L +S L++LDLMLP Sbjct: 8 TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67 Query: 62 DGLSICRRLRSQSN----PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIR 117 DG+ +C+R+R + IIM+TAKG+ DR++GLE+GADDY+ KPF PRELLARIR Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127 Query: 118 AVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPR 177 AV+RR L Q+E + FG+ K+ + E+ +DEP+ LT+ +F +L +H Sbjct: 128 AVMRRHDLPL---HQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSG 184 Query: 178 EPLSRDKLMNLARGRE-YSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + LSR++L + + ++R+IDV ISRLR ++E++P P+ I TV G+GY F D Sbjct: 185 KVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 243 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 134/233 (57%), Gaps = 7/233 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + K+L++DD+ L L + ++GF V + E+ R+ SF ++LDLMLP D Sbjct: 15 KTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKID 74 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+++C R+R QS+ IIM+TAK ++D+I+GLE+GADDY+ KPFN REL+AR+R ++RR Sbjct: 75 GITLCNRIRQQSDVF-IIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Q ++ F +++G+R + R +E + LT EF +L L+ + R Sbjct: 134 QEK-----GEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGR 188 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +++ L G R+IDV + LR +++ I+T WG+GY F D Sbjct: 189 EEIFQLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KI VVDD++++ +++ YL G+ V N L + + L++LDLMLP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 IC LR +S +PIIM+T K +E D + GL+IGADDY+ KPF+PR+L+AR++A+LRR Sbjct: 70 DICEMLRKRS-KVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTE 128 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 +EL S + +N E+ + + LT E+ +L ++ +P + +R++ Sbjct: 129 DELGEKNSLFS--LNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREE 186 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L+ + G+ + +R+ID I LR +E++P P YI T+ G+GY F Sbjct: 187 LIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 2/232 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD+ + ++ L G++V + + L + L+VLDL++PG DG Sbjct: 2 PNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGY 61 Query: 65 SICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 SICR L+ + +PIIM++A+ +E+D+++GLE+GADDYI KPF+PREL+AR+ A LRR Sbjct: 62 SICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRR 121 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 E P + +I GK ++ + + L + EF +L L P + SR Sbjct: 122 DKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSR 181 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+ + S R++DV I R+R+ +E A+ +YI+T G+GY F+ Sbjct: 182 YFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIE 233 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 3/233 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 ILVVDDD +R + Y+ +G V N + + R+ L++LD+M+ G +G Sbjct: 2 PKTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR-R 122 +C +R + +PII+++AK + VD+ +G ++GADDYI KPF P EL+ R + LR R Sbjct: 62 FEVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNR 121 Query: 123 QANELPGAPSQ--EEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 E P +VI G +++ TR++ + + LT+ E+ +L + P Sbjct: 122 SPQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVF 181 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +R ++++ G Y + V I +LR +E DP+ P +I T WG+GY V Sbjct: 182 TRQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 128/242 (52%), Gaps = 14/242 (5%) Query: 1 MQENYK--ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML 58 M + +LVVDD+ R+R L+ YL + V + R + L++LD+M+ Sbjct: 1 MAPGKRPVVLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMM 59 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 P DG +R+R +S +P+IM+TA+G DR+ GL +GADDYI KPF+ REL AR++A Sbjct: 60 PRLDGWQTLQRIREES-AVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQA 118 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 VLRR A ++ I G + R P+PLT EF +L L +HP + Sbjct: 119 VLRRSAGQVEANVP-----IRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQ 173 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF--VPDG 236 SR+KL++ G ++ R++D I LR + E I TVWG+GY F VPD Sbjct: 174 VFSREKLLDRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAEVPDA 230 Query: 237 SK 238 Sbjct: 231 QP 232 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 133/229 (58%), Gaps = 13/229 (5%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+VDD+ ++R +L YL ++G++V + E+ +L + F L++LD+MLP +DG Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 SI R + + P+IM+TA+ + D + G E+GADDYI KPFN + LLAR++++LR+ Sbjct: 67 SILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 N + E++I G +N + + + L E+ +L L+ + + LSR+K Sbjct: 126 NMV-------ESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREK 178 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L+N G ++ +R+ID I LR+ + ++ I+T+ G+GY Sbjct: 179 LLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKLD 222 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 8/231 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +L+V+D+ +R ++ YL E G++VR +N ++ L++LD+M+PG DGL Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 RR R+ + +P+I +TA+ E+D+++GLE+GADDY+ KPF+ ELLAR+RA LRR + Sbjct: 83 EFLRRFRA-TEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 LP A V+ G+ +L+ TR E + LT EF ++ A + P +R + Sbjct: 142 EPLPNA------VLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLE 195 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 + E ER+IDV + LR +E +P PR I+TV+G+GY PD Sbjct: 196 -LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNC3_CLOBO Length = 231 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 146/232 (62%), Gaps = 4/232 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M +K+LV++D++ + ++ L +Q F+V + E + +T E+ +++LD+MLPG Sbjct: 1 MNHKHKVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C LR + IIM+TA G++VD+I GLE GADDY+ KPFNP EL AR+ +++ Sbjct: 61 IDGFKVCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLI 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + ++ FK++L ++ ++ +E + LT EF +LK + + L Sbjct: 121 RR----MSFSNDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISL 176 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 SRDKL++LA G + + +DV I RLR +E+DP++P+Y+QTVWG GY++ Sbjct: 177 SRDKLLDLAWGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGYIW 228 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 133/231 (57%), Gaps = 8/231 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ILV++D+ +L +E LT +G++V ++ R ++ L++LD MLPG Sbjct: 7 SSAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGIS 66 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL ICRRLRS N +P++++TA+ E DR GL+ GADDY+ KPF+ +ELL+RIR LR Sbjct: 67 GLEICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR- 125 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + F L+ TRE+ R + + LT+ E+ +L+ L+ HPR+ L+R Sbjct: 126 ------QPRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTR 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +++ G +++ I+V I LR +E P R IQTV G+GYV Sbjct: 180 QQILEHVWGCDFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVLR 229 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 133/235 (56%), Gaps = 6/235 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+L+V+DD + L+ LT V V +AE + + + + L++LD+ LP DGLS Sbjct: 5 KLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQMDGLS 64 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR+++ +I++TA ++DR++GLE+GADDYI KPF REL AR++ LR +A Sbjct: 65 LCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRAQ 124 Query: 126 ELPGAPSQEEAV-----IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 L + E +V + G + + +++ ++ + LT+ EF +L HP Sbjct: 125 LLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHVF 184 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 SR +L++ G ++S E +++ I+RLR +E + P I+TVWG+GY P Sbjct: 185 SRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTP-IIETVWGVGYKLNPS 238 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 309 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 134/229 (58%), Gaps = 9/229 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILV++DD ++ LLE L +GF V + ++ + S+ +++LD+MLP G+ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+R+R S +PIIM+TAK E D++VG + GADDY+ KPF+ ELLARI+A+LRR Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFRE--DEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + + F +N T E+FR+ + L+ EF +L LV + LSRD Sbjct: 123 SV-----VHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRD 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 K++ G +Y + +D+ I LR + + P ++IQTV G+G++F Sbjct: 178 KILEEVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 10/239 (4%) Query: 1 MQENY-----KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLD 55 M +L+V+DD + LE LT +G++V + E+ L L+++D Sbjct: 8 MTRTPQTPARTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIID 67 Query: 56 LMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLAR 115 +MLP +G + R LR++ +P+IM++A+G E+D+++GLE+GA+DYI KPF+ ELLAR Sbjct: 68 VMLPRLNGFELLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLAR 127 Query: 116 IRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSH 175 ++AVLRR + A + G +N TRE+ R D + LT+ EF VL L Sbjct: 128 VKAVLRR-----DAIARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEA 182 Query: 176 PREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 LSR+++ G + R+ID I +LR +EE+ PR++ TV G+GY FVP Sbjct: 183 GGRVLSREQIQAKVWGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFVP 241 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 161/240 (67%), Gaps = 3/240 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + ILVVDDD +R LL YL + GF V AN +M R++ +E +L+VLDLMLPG Sbjct: 1 MSDQNHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 EDGLS+CR +R+Q + +PIIM+TAKG VDRI+GLE+GADDY+PKPF+PRELLARI+ +L Sbjct: 61 EDGLSLCREVRAQGD-LPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVIL 119 Query: 121 RRQANELPGAPSQEE-AVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPRE 178 RR N+ A +E + I+F ++L+ R+MF E + L S ++ VL+AL+ HP Sbjct: 120 RRTRNDRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNR 179 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 PLSRD L+ G+E AM+RSIDV ISRLR +E D +P I+TV GY+ Sbjct: 180 PLSRDFLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQVKH 239 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 140/244 (57%), Gaps = 14/244 (5%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES--FHLMVLDLMLPGED 62 KIL+V+D+ + ++ + ++ + + + + + + ++ LDL LPG D Sbjct: 1 MKILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMD 60 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G+ + +++R QS +PIIM+TA+ E D+++GLE+GADDY+ KPF+P L+ARI+A+ RR Sbjct: 61 GMQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120 Query: 123 QANELPGAPSQEEAV---------IAFGKFKLNLGTREMFREDEPM-PLTSGEFAVLKAL 172 +++ V + FK++ TRE + DEP+ LT EF +LK L Sbjct: 121 AELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTL 180 Query: 173 VSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +PR+ SR++L+ L +Y ER++D I +LR+ +EE P+ IQTVWG+GY F Sbjct: 181 AKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKF 238 Query: 233 VPDG 236 Sbjct: 239 DDSA 242 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 132/230 (57%), Gaps = 7/230 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILV+DDD LR + L ++GF+ + L+++DL LPG G Sbjct: 13 QTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGT 72 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 IC++LR+ PII+++A +E+D+++ LEIGADDY+ KPF REL ARIRAVLRR Sbjct: 73 EICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRR-- 130 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 A + V+ F + +++ R + R+ E + LT E+ +L + +P PL+RD Sbjct: 131 -----ASTDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDM 185 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 ++N G E+ R++D + +LR+ +E DP P++ TV G+GY F+P Sbjct: 186 ILNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFIP 235 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 144/236 (61%), Gaps = 3/236 (1%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + +L+V+DD RL L YL G +V + + E L++LDLMLPGED Sbjct: 6 HTWHVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGED 65 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G SICR +R + + PI+M+TA+ ++ D I GL+ GADD++ KP +PR LLARI+A+LRR Sbjct: 66 GFSICRSVRDRYDG-PILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRR 124 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 E P P+ E + FG ++ RE + ++ + LT EF +L LV++ LSR Sbjct: 125 S--EAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSR 182 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +++ RG Y +RSIDV+ISR+R + +DP HPR I+TV GY+FVP+ ++ Sbjct: 183 EEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQ 238 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 106/237 (44%), Positives = 153/237 (64%), Gaps = 3/237 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ N IL+VDDD +R LL YL + G + AN QM +L + S L+VLDLMLPG Sbjct: 1 MENNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPG 60 Query: 61 EDGLSICRRLRS-QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 EDGL++CR LR+ + +P++M+TA+ EE DRI+GLE+GADDY+ KPF REL ARIR+V Sbjct: 61 EDGLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSV 120 Query: 120 LRRQANELPG-APSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPR 177 LRR S+ + FG +KL+ R + + + L+ E+ +L+ + HP+ Sbjct: 121 LRRARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQ 180 Query: 178 EPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 L+RD+L+NL +GR+ +RSID+ ISRLR+ +++D PRYI+T+ GYVF Sbjct: 181 RVLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSA 237 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 12/235 (5%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ K++VV+DD +LR LLE L G+ V S + E+ L++LD+MLP Sbjct: 1 MENKVKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG + + LR + I+M+TA G + D++ G E GADDY+ KPF+ ELLARI+A+L Sbjct: 61 MDGYEVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALL 120 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR+ + I FG ++ R + + + L+ EF +L L + + Sbjct: 121 RRKNISISQP-------IKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVV 173 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 S++++++ G +Y + +++V ++ +R+ + P I+T+ G+GY V + Sbjct: 174 SKEEILDAVWGIDYYGSDNTVEVYVNYIRKKL-----SPELIKTIRGVGYKLVGE 223 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 10/229 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +KI+V++D+ + LL +L G+ + ++ +L+ E L++LDLMLPG G Sbjct: 3 HKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGT 62 Query: 65 SICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 +C+ ++ + +PIIM+TA+G+EVDRI+G E+GADDY+ KPF+PREL+ RI+ VLRR Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 N LP + + + + LT EF + V + + LSR Sbjct: 123 NVNILPKVAHWQRD-----GLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 ++L++ A G E+ R++D + RLR+ + + +++TV G+GY Sbjct: 178 EQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGP---YADWLETVRGIGYR 223 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 85/238 (35%), Positives = 139/238 (58%), Gaps = 3/238 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E K+L+VDD+ ++ +++ YL ++G V + Q + R + L+VLDLMLP Sbjct: 1 MLEEKKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPD 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G IC +R +S +PIIM+TAK +E I GL +GADDYI KPF+PREL+ARI A+ Sbjct: 61 MTGEEICSIVRKRSR-VPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIF 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P E +++ +E+ + E + LTS ++ +L L+ +P + Sbjct: 120 RR--LNEEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTF 177 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 +R++L++ A G +Y +R++D + +R+ +E +P P+YI TV G GY F + ++ Sbjct: 178 TREELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFNE 235 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 6/229 (2%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL+ DDD +L ++L Y ++ F V + + + L + +MVLD+M+PG DG + Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CRR R ++ +PII ++AK +E DR+VGL +GADDY+ KPF+ REL+AR+++ LRR+ E Sbjct: 66 CRRARQFTD-IPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRGE 124 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 + + ++ E+ R+ + LT EF++L L S P SR +L+ Sbjct: 125 VLSQVAS----YEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLL 180 Query: 187 NLARGREYS-AMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 A G Y ER+ID I LR+ +E DP+ P YI TV+G+GY F Sbjct: 181 EKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 111/240 (46%), Positives = 146/240 (60%), Gaps = 2/240 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M ILVVDDD +R LL R+L Q F+V +V +A + R + L+VLDLMLPG Sbjct: 24 MDIMPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPG 83 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 E G+ R LR +S +PIIM+TA GEE DRI+GLE+GADDY+ KPFNPREL+ARIRAVL Sbjct: 84 ESGIDFARWLRGES-QVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVL 142 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREP 179 RR + F + L R + +PLT GE+ +L AL+ P Sbjct: 143 RRVGENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRV 202 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 L+RD L++L RGR+ +R+IDV ISRLRR +E+D H + I+TV G GYV ++ Sbjct: 203 LTRDMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLAVPVERS 262 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++LV+DDD ++ A+L+R LT +G++V + + + L++LD+MLPG DG Sbjct: 3 ARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGW 62 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 IC+R R N PI++++A+ E ++ GL +GADDY+ KPF ELLAR++A+LRR+ Sbjct: 63 EICQRFRKD-NFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR- 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 VI F K++L RE+ R + LTS EF +L + HP + L+R++ Sbjct: 121 -------ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQ 173 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 +++ G +++ ++V I+ LR+ +E+ + R I TV G+GYV G Sbjct: 174 IIDRVWGLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLKEQG 223 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 138/236 (58%), Gaps = 11/236 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KILVVDDD + +++ ++ F VR+ +A M L + L+VLD+MLP GL Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + ++L+ + +P+I +TA+ ++D I+GLE+GADDYI KPFNPR L+ARI+AV RR Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 ++ V+ G ++++ + M ++ + L EF +LK ++ +P + +R + Sbjct: 121 MGP-----KDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQE 175 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV-PDGSKA 239 +++ G ++ R++DV IS+LR + +I+TV G+GY V P+ K+ Sbjct: 176 ILDRVWGMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLVIPEDEKS 226 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 IL+VDD+ +R ++ L G++ N +Q ++ L++LD MLPG G+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 65 SICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 + RRL+ + +PIIM+TAKGEE ++I GLE+GADDYI KPF+PREL+AR++AVLRR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 P EA I G L+ + + + +P + E+ +L+ ++H +R Sbjct: 124 TG------PGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +L++ G ER++DV I RLR+ + E + +QTV G GY F Sbjct: 178 GQLLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRF 225 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 9/230 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILVVDD+ +R +L L + V +A+Q L+ + L++LD MLPG G+ Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 65 SICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 + RRL+ ++ +PIIM+TAKGEE +++ GLE+GADDYI KPF+PREL+AR++AVLRR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + P I L+ + + D P+ + E+ +L+ ++H +R Sbjct: 124 TDSMGISEP------IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++L++ G ER++DV I RLR+ + + H R+IQTV G GY F Sbjct: 178 NQLLDHVWGGNVYVEERTVDVHIRRLRKALSLEG-HDRFIQTVRGAGYRF 226 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 133/232 (57%), Gaps = 2/232 (0%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N KILV++DD+ + +++ +LT + + V + ++ ++++ L++LD+MLP DG Sbjct: 2 NGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 ++C+ +R SN +PI++++AK +EVD++ GL++GADDYI KPF+ EL AR+ ++R Sbjct: 62 FTVCKNIRLLSN-VPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRY 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + ++ +D+ + LTS EF++L L + + ++ Sbjct: 121 KGYNKKTDDNSIWRYK-NGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKK 179 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 +L ++ +I V + LR+ ++++ +P+YIQTVWG GY F+ + Sbjct: 180 ELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGE 231 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 132/233 (56%), Gaps = 7/233 (3%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KIL+VDD+ + LL L G+QV + E+ ++ L+VLDLMLPG DG Sbjct: 3 KEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDG 62 Query: 64 LSICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 L + R +R+ PI+M++AKGEE D I GLE+GADDYI KPF+P+ L+ARIR+VLR Sbjct: 63 LEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLR 122 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 RQ AP IA ++ + + + LT EF +L L S P + Sbjct: 123 RQQ--AKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 R ++++ RG Y+ +RS+DV IS LR+ +E+ YI+TV G+GY F Sbjct: 181 RWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFRE 230 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 131/232 (56%), Gaps = 4/232 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + ++LVVDD+ + L+ L +GF+V +V + + + + L+VLD+ML Sbjct: 76 KSRVRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDI 135 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG ++C RLR + +P + +TA+ D++ GL +G DDY+ KPF+ EL+AR+RA+LR Sbjct: 136 DGFAVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILR 195 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + + G + F +L+ TRE+ R + LT+ E+ +L+ L+++ R L+ Sbjct: 196 RAGSPVTGDGHPAP--LRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLT 253 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 R +L++ G ++S ++ IS LRR V D P I TV G+GYV Sbjct: 254 RAQLLDHVWGHDFSGEGGVLETYISYLRRKV--DNVEPPLIHTVRGVGYVLR 303 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGEDG 63 KIL+VDDD + LLE Y +G++ + N + L L++LDLM+P +G Sbjct: 1 MKILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNG 60 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + + R++R S+ +PI++++AK ++D+I GL GADDY+ KPFNP E++AR++++LRR Sbjct: 61 MDVIRQVRKDSS-IPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREM-FREDEPMPLTSGEFAVLKALVSHPREPLSR 182 N + + V+ G +N + E+ + +P+ LT+ EF +L L SHP S Sbjct: 120 EN---QVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSA 176 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 D + +E +++ V +S LR +E + I+TVWG+GY Sbjct: 177 DDIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYK 225 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 1/232 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ILV++DD + L+ + L + + E+ + +++LDL LP DG+ Sbjct: 2 KTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGI 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR +R PI +VTA+ EE+DRI+GLE+GADDYI KPF+ REL R+ RR Sbjct: 62 EVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121 Query: 125 NELPGAPS-QEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + P+ I G K++ R + +D + ++ EF +L+ + + P + SR+ Sbjct: 122 KKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSRE 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 ++ G E+ ER ID + R+R +E++ A P +I+T+WG+GY F + Sbjct: 182 MILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 132/230 (57%), Gaps = 8/230 (3%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 ++LVV+D++++ + R L E+GF V + ++ ++ + VLD+MLPG DG+ Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 S+ R LR + +PI++++A+ E D+I GL GADDY+PKPF+ EL+AR+RA++RR A Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 +V G LNL TRE+FR + + LT+ EF++L+ L+ P +R + Sbjct: 166 GIG-------LSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQ 218 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + + +DV I +LR+ + ++ + IQTV G+GY Sbjct: 219 VCERVWNYHFDPGTNLVDVYIQKLRKKI-DEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 4/228 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 KIL+VDDD L + L +G++V + + + L RE L+VLD+M+P G Sbjct: 2 KEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +++R +S+ +P+I++TAK + VD++VGLE+GADDYI KPF+ +ELLARI+A+L Sbjct: 62 FEVLKKIRERSD-VPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL--- 117 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + V+ G +++ + R+ EP+ LT EF +L L+ P + +R Sbjct: 118 RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRA 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 ++ + R IDV ISRLR +E DP+ P IQTV +GY Sbjct: 178 QISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 133/232 (57%), Gaps = 2/232 (0%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ I + DDD +R LL YL +G+ +R N +++ L + E+ L++LDLM+P Sbjct: 1 MRSQPVICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPV 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G+ C +R + MPI+M+TAK ++D + G+ +GADDYI KPFNP E+ R++++L Sbjct: 61 MGGIEACIEIRK-TQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + + + F L+L TR+ +++ + LT EF +L + HP + L Sbjct: 120 RRYRDYGS-DRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVL 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 + +++ G ++ ++ V I+++R +E+ P P I+TVWG+GY Sbjct: 179 TVEQIYEAVWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 118/234 (50%), Positives = 163/234 (69%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +IL+VDDD LR LL YL QG +V + +A +++ L RE L+VLDLM+PG DG Sbjct: 66 TTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDG 125 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L+ R+LR+ + +P+IM+TA+ ++VDRIVGLE+GADDY+ KPFNPRELLAR++AVLRR+ Sbjct: 126 LTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 185 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 A ++ AFG+F L+ R + + +P L+S EFA+LK V+H L+R+ Sbjct: 186 RATPSAAAPEQREPFAFGRFVLDFQARTLSIDGKPATLSSSEFALLKIFVNHALRTLTRE 245 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +L+ L G EY +R IDVQ+ RLRR++E DP+ PR+IQTV G GYVFVPDG Sbjct: 246 RLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 299 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 140/228 (61%), Gaps = 3/228 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 I +V+DD L L+ YL F V+ +A + + R+ L++LDLMLPG DGL Sbjct: 48 PNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGL 107 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 +CR LR +S +PI+M+TA+ + D+++GLE+GADDY+ KP PR LLAR+R +LRR Sbjct: 108 QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS- 166 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 P + +I G +++L R + E + L+SGE+ +L L + E ++RD+ Sbjct: 167 --SVNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDR 224 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 ++ RG E++ +RS+DV IS+LRR +++ R I+TVWG GY+F Sbjct: 225 ILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 143/229 (62%), Gaps = 4/229 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 IL++DDD L L+ R+L+ +GF V + L ++ F L V+D+M+PG++G+ + Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 R LR QS+ +P+IM+TA+GEE+DRI+GLE+GADDY+PKP NPREL ARIRAVLRR + Sbjct: 63 LRELR-QSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQ 121 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 QE FG + + +R + EP+ LT+ E+ +L L+ H E +S+ +L Sbjct: 122 QESDDKQET---RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELS 178 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 A G+ + +R++DV I LR+ + I+TV +G++FVP+ Sbjct: 179 QAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGEDG 63 +K+LV++D+ +R +L+ YL G+QV + N ++ L +++LD+MLP G Sbjct: 3 HKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 S+ + +R S +P++M+TA+GEE D+++G E+GADDY+ KPF+PRE++AR++A+L R Sbjct: 63 WSLLKTIRETS-KVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + + +++ +RE+ + + + LT EF +LK L+ + + +SR+ Sbjct: 122 YGSQDDGKT------EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSRE 175 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 K +N G ++ R++D I +LR + E I+TVWG+GY D Sbjct: 176 KCLNEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 145/236 (61%), Gaps = 6/236 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLP 59 M+E KIL+++D++ +R+ + L +G+++ + +T E+ + +LD+MLP Sbjct: 13 MKE--KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLP 70 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G+ +C+ +R + + IIM+TAK +E D+I G GADDYI KPF+ +ELL R+ A+ Sbjct: 71 DISGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSAL 130 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR A + S E I F L++ R++F+ + + LT EF+++K L+S+ ++ Sbjct: 131 LRRVAKDDSSVKSSE---IVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQS 187 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 LSRD++++ G Y + +DV I R+R +E+DP+ P+YIQT+WG GY F + Sbjct: 188 LSRDQILDEVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 243 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 128/230 (55%), Gaps = 3/230 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 Y ILV DD+ +R++L YL + G+ V A+ +Q +L + + +LD+M+P DG Sbjct: 2 PYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + +RLR S+ +P+I+V+AKG++ ++I+GL +GADDY+ KPFNP E +AR+ +RR Sbjct: 62 YQVLKRLRETSD-VPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRL 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P + V+ +L+ + EP+ LTS E+ ++ + HP ++ Sbjct: 121 KGMAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQ 180 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ +Y A E S+ V +SRLR + +D I+T+ GLGY Sbjct: 181 QIYECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRLE 228 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 6/232 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + K+LVVDD+ + L++ L QGF V + N + + +LD+M+PG Sbjct: 27 TQPVKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGM 86 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 DG ++ +LR + P + +TAK DRI GL IGADDY+ KPF+ E++ R+R +LR Sbjct: 87 DGFTLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILR 146 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R A + +E ++I + L+ E+ + E + L+ EF +L+ L+ + LS Sbjct: 147 RVAKDDS----EESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLS 202 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + K+++ ++ ++ +S LRR + D PR I TV G+GYV Sbjct: 203 KSKILDHVWNYDFGGDGNVVESYVSYLRRKI--DTKEPRLIHTVRGVGYVLR 252 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 4/227 (1%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +LVVDD+ R+ A + L +G +V + N + + E +++LD+M+P DG Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 RR+RS S +P+I++TAK EE DR+ GLE+GADDY+ KPF+ REL++RIRAVLRR Sbjct: 69 LRRIRSFS-QVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHY-- 125 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 P + V + ++ RE+ + + + L E+ +L LV + L+ + L+ Sbjct: 126 -TQPPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLL 184 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 + G EY + + I+ LR+ +EEDP++PRYI T G+GY FV Sbjct: 185 SKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 134/231 (58%), Gaps = 8/231 (3%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E KIL+VDD+ + ++ L ++G+ V + + + H++VLDLMLP Sbjct: 1 MNE--KILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPV 58 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +G +C+RL + + IIM+TAK + VD+I+GLE+GADDY+ KPF+ REL+ARI++++ Sbjct: 59 INGYDVCKRL--EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLI 116 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + + VI G +N R + ++ + T EF +L L+S+ Sbjct: 117 RRLDKTIDEEK--DSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVY 174 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 SR++++N+ +Y+ R++D I R+R+ + + + IQTV+G+GY Sbjct: 175 SREQILNIIWNMDYAGGTRTVDTHIQRIRKKLGNN--YQDLIQTVYGIGYK 223 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 305 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 96/237 (40%), Positives = 145/237 (61%), Gaps = 3/237 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 +E+ +L+VDDD +R LL +L +G +V + E+M +++R + L++LD+MLPG+ Sbjct: 78 KEDAHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGK 137 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G+ IC+ +R S +PIIM+TA + D+I+GLEIGADDY+ KPF+PRELLARIRAVLR Sbjct: 138 SGIEICQDIRRHSR-VPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLR 196 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPL 180 R N + + F + L+ R + D + LT+ EF +L+A V + L Sbjct: 197 RLENNRAPSRPVTHS-YRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHIL 255 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 SRD+LM +A + +RS+D+ ISRLRR + +D P+ I T+ GY F + Sbjct: 256 SRDQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEVE 312 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 6/229 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 +ILVV+D+ + LE LT +G+ V + R +F L++LD+MLPG+DGL Sbjct: 3 RILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGLE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +CR LR PI+M+TAK E ++++GLEIGADDY+ KPF +EL ARI+A+LRR + Sbjct: 63 VCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRASG 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 + + +FG +++ E+ + + + LT EF +L + LSRD+L Sbjct: 123 DT------DLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQL 176 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 + GR+ R +D I+ LRR + +DPA PRY++ V GLGY F Sbjct: 177 IAATWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRFDG 225 >UniRef50_A4J7U5 Two component transcriptional regulator, winged helix family n=89 Tax=Firmicutes RepID=A4J7U5_DESRM Length = 239 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 136/235 (57%), Gaps = 1/235 (0%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTR-ESFHLMVLDLMLPGEDG 63 KILV++D+ +R+ + L GFQ + E+ + + + +LD+MLPG DG Sbjct: 2 QKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +CR L+ + + IIM+TAKG+E D++ GL +GADDY+ KPF+P+EL+ARI A++RR Sbjct: 62 FEVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRRL 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 + E + G + + L ++ ++ ++ + LT EF ++K + + + +SRD Sbjct: 122 QPFNTQLGGEAENRLCSGIYCICLDKKKFYKGEKEIDLTPKEFEIIKLFLHNVDKAISRD 181 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 ++N GR Y + +DV I R+R+ +E DP++P ++ VWG GY + Sbjct: 182 DILNQIWGRHYIGDLKIVDVNIRRIRQKIENDPSNPATLEKVWGYGYRWRGGVEN 236 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 90/237 (37%), Positives = 135/237 (56%), Gaps = 8/237 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 N KIL+VDD+ + L+ L +G+ + E+ + RE L+VLDLMLPG D Sbjct: 2 PNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGID 61 Query: 63 GLSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G + RR+R + + +PI+M+TAKGEE D + GLEIGA+DYI KPF+PREL+ARIR +L Sbjct: 62 GFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGIL 121 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR+ A A + G +++G + + + LT EF VL LV+ Sbjct: 122 RRRTRVEKPATQ---ATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVF 178 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +R ++++ G Y+ ERS+DV I+ LR+ + +I+TV G+GY F + Sbjct: 179 TRGQIVDAVHGENYAVTERSVDVTIAGLRKKLGP---CADFIETVRGVGYRFREEAD 232 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 131/234 (55%), Gaps = 13/234 (5%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+++D+ + +++ YL +G+ V S N + +E L++LDLMLP Sbjct: 1 MNN---ILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPD 57 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +C+ LR S+ + I M+TAK D+I GL IGAD+Y+ KP +PREL AR+ A+ Sbjct: 58 IDGEEVCKILRKISD-VYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALF 116 Query: 121 RRQANELPGAPSQEEAVIAFGK--FKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 RR ++E VI+F +++ R + E + LT EF +L L S+ + Sbjct: 117 RRVG-------CKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGK 169 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 +R+ ++ A G E+ +RSIDV I LR+ +EED P+YI TV +GY F Sbjct: 170 VFTREAIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + ++LVV+D+ R ALL R L E+G+ V V + T + +VLDLMLPG D Sbjct: 28 RSMRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLD 87 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G +CRRLR P++M+TA+G+ DRI GL+ GADDY+PKPF+ EL AR+RA++RR Sbjct: 88 GFEVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 147 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + V+ G +L+ + R P+ L++ EFA+L L+ HP E L+R Sbjct: 148 -------GAVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTR 200 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 +++ + +D + +RR + + P P I+TV G+GY Sbjct: 201 TYIVDHVWDFAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRLRTPAE 254 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 5/235 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M K+LVVDD+ + L+ LT GF++ N + ++ L++LDLMLP Sbjct: 1 MNRT-KLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPD 59 Query: 61 EDGLSICRRLR--SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 DGL +CRR+R + + PIIM+TAK EE D+++GL +GADDYI KPF REL AR+R Sbjct: 60 IDGLEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRT 119 Query: 119 VLRRQ--ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHP 176 VLRR + + + +I +++ + ++DE + T EF +LK L Sbjct: 120 VLRRVMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESL 179 Query: 177 REPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 LSR L+ G + + R +DV I +R+ + + P+YI+T+ G+GY Sbjct: 180 EHVLSRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYK 234 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGED 62 IL+V+D+ L A +E L +G++ R + L RE ++LDLMLP Sbjct: 10 QKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDIS 69 Query: 63 GLSICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G IC+ LR Q + +P+IMVTAKG E+DR+VG E+GADDY+ KPF+ REL+ RIRA+L Sbjct: 70 GTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALL 129 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR P+ +I F + +++ ++ +++ + LT+ EF +L A +S Sbjct: 130 RRTER-----PADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQ 184 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +RD L++ G E R++D + RLR + + RY++T+ G+GY F Sbjct: 185 TRDALLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFR 234 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 134/242 (55%), Gaps = 16/242 (6%) Query: 1 MQEN--YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML 58 M +N I+VVDD+ +R LL L GF+V + A+ + ++ R + +L+V+D+ML Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 P DG ++ RR+R +P++ +TA+ + D+I+GL +G DDY+ KPF+ E++ARIRA Sbjct: 61 PDIDGFTVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 +LRR P +E +I ++N + ++ R P+ L+ E+ +L L+ + Sbjct: 121 ILRRTQ-----EPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGR 175 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE-----EDPAHPR----YIQTVWGLG 229 LS+ +++N ++ ++ IS LR+ ++ +D + I+T G+G Sbjct: 176 VLSKSQILNHVWQYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIG 235 Query: 230 YV 231 Y+ Sbjct: 236 YM 237 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 6/229 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLPGEDG 63 KIL+VDDD + LL Y+ +G++ + ++ L LM+LD+M+P G Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + + + +R S +PII+V+AK ++D+I GL GADDY+ KPFNP E++AR++++LRR Sbjct: 61 MDVVKEVRKDS-QIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMF-REDEPMPLTSGEFAVLKALVSHPREPLSR 182 NE+ + E V+ G + + E+ + + LT+ EF +L L SHP S Sbjct: 120 QNEVTNS---EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSA 176 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYV 231 D++ +E +++ V +S LR +EE + I+TVWG+GY Sbjct: 177 DEIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYK 225 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 3/239 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRES-FHLMVLDLMLP 59 M + I VVDDD +R LL+ YL + F V + + E E L++LD+MLP Sbjct: 1 MTQAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLP 60 Query: 60 GEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G+DG ++CR LR+QS +P+IM+TA +E+DRI+GLEIGADDY+ KPFNPRELLARI+A+ Sbjct: 61 GQDGFAVCRSLRTQS-QVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAI 119 Query: 120 LRRQA-NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 LRR E+ F +F L+ +RE++ +DE L+ ++ +L ++HP Sbjct: 120 LRRMEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGA 179 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGS 237 L+R+ + RGR+ + ++R IDV +SRLR+ + ED P+ I+T+ G GY+ Sbjct: 180 VLTRELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASVE 238 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 136/233 (58%), Gaps = 6/233 (2%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 K+LVVDD+ + L+ +L E G+QV + N ++ L + + L++LDLMLPG Sbjct: 7 NPGQKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGI 66 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G+ +C++++ + + MPIIMVTAK E + ++GLE+GADDY+ KPF+ REL+AR+R+VLR Sbjct: 67 GGMDLCKKIKEKYS-MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + I G LNL + F + + LT E+ +L +++P + Sbjct: 126 RTKEGEEEEQFEGN--ITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFT 183 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 RDKL++ G++ +R++DV I RLR + + ++T+ G+GY F Sbjct: 184 RDKLLDRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFNE 233 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 90/237 (37%), Positives = 140/237 (59%), Gaps = 10/237 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+++DD + L+ YL +GF+ V++ L R ++LDLMLPG DGL Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 65 SICRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 ++ R ++ + P+++VTAKGEE DR+VGLE+GADDYI KPF+P+E++AR++AVLRR Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + ++ G +++G E E P PLT+ EF +L AL+ L R Sbjct: 123 RETQQRLT-----ERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDR 177 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 + L+N G +Y +R++DV I RLR+ + E A +++TV +GY F +G Sbjct: 178 ETLLNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEGKGG 231 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 133/235 (56%), Gaps = 10/235 (4%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + I V++DD + L++ L G+ +R + + R+ L +LD+M+PG Sbjct: 1 MSQT--IFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPG 58 Query: 61 EDGLSICRRLRSQS--NPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 DGL +CRRLR+ + + +PII VTA+ E DR++GLE+GADDYI KPF PRELLAR++A Sbjct: 59 GDGLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKA 118 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 VLRR ++I+F ++ ++ E T+ EF +L L HP Sbjct: 119 VLRRFERPSTP------SLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGR 172 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 SRD L++ G RS+DV + R+R +E DP +PR+++TV G GY F Sbjct: 173 VFSRDHLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 102/237 (43%), Positives = 153/237 (64%), Gaps = 3/237 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +L+VDDD + +LL + + V N M L +E+ L++LD+ML GEDG Sbjct: 2 PHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDGF 61 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 S+C+++R+ S +P+IM+TA + DR+VGLEIGADDY+ KPF+ RELLAR++AVLRR A Sbjct: 62 SLCQKMRAVSR-VPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 125 N-ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEP-MPLTSGEFAVLKALVSHPREPLSR 182 E PS+ ++ F ++L++ RE+ D + L+ GEF +L A H + L+R Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTR 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 D+L++LARG ++A +RSIDVQ+SRLR +E+DP P I+TV GY+F P ++ Sbjct: 181 DQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTPVVTRG 237 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 5/231 (2%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 + +IL+++D+ + LL L +GF+ R R L L+VLD MLP Sbjct: 2 DKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRS 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 GL IC+++ +Q N +PI+M+TA+ + D+I+GLE+GADDYI KPF+ RE++ RIR +LRR Sbjct: 62 GLDICKQVTAQYN-IPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRR 120 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 A +VI F ++ R + ++ E + LT EF +L AL+ +R Sbjct: 121 LAQAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTR 180 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 +L+ G ++ R++D I RLR+ ++ I TV+G+GY F Sbjct: 181 AELLESVWGYDFPGDMRTVDTHIQRLRKKLDA----ADLITTVFGIGYKFE 227 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 6/234 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M+ IL+VDD+ RL L++ L G+ V + A+ + +L + L++LD+MLPG Sbjct: 1 MKRK-TILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPG 59 Query: 61 -EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 +G +C+R+R S+ +PIIM+T + E DRI G + GADDY+ KPF+ ELL R++A+ Sbjct: 60 PLNGFEVCKRIREFSD-IPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAI 118 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR P + V FG +N + +F + LT+ E+ VL L + + Sbjct: 119 LRRSH---PSEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKV 175 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ + L+ G EY + IS LR+ +E+DP P+YI G+GY Sbjct: 176 ITHEDLLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLA 229 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 95/231 (41%), Positives = 147/231 (63%), Gaps = 4/231 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 N+ ILVV+DD R L YL ++G++V V + + M ++ ++++ L++LD+ LPG DG Sbjct: 3 NHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDG 62 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 L + R +R QS + +IMVT K +EVDRIV LE+GADDY+ KPFN RELLAR + +LRR Sbjct: 63 LQLLREIRHQS-EVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRT 121 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFR-EDEPMPLTSGEFAVLKALVSHPREPLSR 182 + + + + +F + L++ R +F + + LT GEF +L S P ++R Sbjct: 122 LSAREASEDENQK--SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTR 179 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D L++ R+++ +R++DV + RLRR +E DP PR+I TV G+GYVF Sbjct: 180 DNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 137/235 (58%), Gaps = 7/235 (2%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 +IL+V+D++RL + L++ L E + V + E L +S+ L +LD+MLP GL Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 I R +R P++++TAK DR+ GL+ GADDY+ KPF+ +ELLAR+RA+ RR Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 G I G F+L+L TR + R EP+ LT+ EF +L+ + +P + LS++ Sbjct: 121 QIAGG------DAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEV 174 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 +++ G + + +++ + LR+ + ++P P YI TV G+GY+F PD + Sbjct: 175 ILDRVWGPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMFHPDPAAG 228 >UniRef50_A9AXT6 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXT6_HERA2 Length = 231 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 133/232 (57%), Gaps = 4/232 (1%) Query: 2 QENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGE 61 + ++L+ +D+ LR + R L +GF+V N + L E L++LDLM+P Sbjct: 3 TQPVRVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRL 62 Query: 62 DGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 G +C+R+R QS +PII++TA E D+++ ++GADDY+ KPF ELLARIRAVLR Sbjct: 63 TGFEVCQRIREQS-IVPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLR 121 Query: 122 RQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 R + S + +G+ +++L + R + LT EFA+L L++HP + L+ Sbjct: 122 RSQWSVQPQASGTK---RYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLT 178 Query: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 L+ G +Y + V I RLRR +E DP++PR++ T G+GY FV Sbjct: 179 HRMLLQHVWGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRFV 230 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 13/241 (5%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M E +L V+DD +R + L GF V ++ + + +LD+M+PG Sbjct: 1 MAEQTHVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG+S+CRR+R +S +P+IM++A+ + +D ++GLE GADDY+ KPF+ L+ARIRAVL Sbjct: 61 LDGVSLCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVL 119 Query: 121 RRQA-------NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALV 173 RR + + + V+ FG+ +++ E+ R +P+ LT E +L Sbjct: 120 RRFGHASGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFS 179 Query: 174 SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 S P LSRDKL+ + R +DV + RLR + +D I TV G GY Sbjct: 180 SAPGTVLSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIDTVRGFGYKLK 234 Query: 234 P 234 Sbjct: 235 A 235 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 138/239 (57%), Gaps = 3/239 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + I +VDDD +R+LL YL GF + NA + + R L+V+D+MLPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 +GL + R LR++S +P+I +TA G+ DRIVGLE+GADDY+ KPF PRELLARIR VL Sbjct: 61 MNGLELFRNLRAES-TVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVL 119 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNL-GTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 RR E + F + L+ + + + L+ E+ +L+ + +P+ Sbjct: 120 RRTEG-GARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRV 178 Query: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 LSRD+L+ +GR +RSIDVQISRLR + ++ P+ I+TV G GYV D Sbjct: 179 LSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDVRP 237 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 128/228 (56%), Gaps = 1/228 (0%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 IL+VDD+ + +L +L +GF + + + + + L ++D+M+P +G Sbjct: 4 TILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 + + +R + MPII+++AK +E+D+I+GL +GADD+I KPF+ E+LARI+A LRR + Sbjct: 64 LIKIVRKEY-KMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +QE + L+ + + + + L++ E+ +LK + P ++ ++ Sbjct: 123 FNTDLLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 Y + + +I VQISRLR +E+ P +P Y++T+ GLGY F Sbjct: 183 FENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFA 230 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 3/241 (1%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M IL+VDDD + LL YL+ F+V + +A+ M L R + +L+VLD+MLPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DGL++ R +R +S +P+IM+TA+ DRI+GLE GADDY+ KPF PREL+ARI VL Sbjct: 89 TDGLTLSREIRERS-QIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVL 147 Query: 121 RRQANELPGAPS-QEEAVIAFGKFKLNLGTRE-MFREDEPMPLTSGEFAVLKALVSHPRE 178 RR AP+ V+ F ++L+ R + + L++ EF +L + PR Sbjct: 148 RRSQGAKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRR 207 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 SRD+LM ARGR A ERSID+ +SRLR+ + +DP P I+TV G GY+F + Sbjct: 208 LFSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMFNVQSVQ 267 Query: 239 A 239 Sbjct: 268 G 268 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 129/236 (54%), Gaps = 6/236 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M KIL++DDD L AL++R + + + ++ + L + + L+VLD+M+PG Sbjct: 18 MN---KILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPG 74 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 DG +R + + +PI+M T+K + + ++ GL GADDY+ KPF+ EL+ARI +++ Sbjct: 75 MDGFETLEEIRKEYS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLI 133 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR A + ++ + F +++L R + L EF +L H + L Sbjct: 134 RRYTRFNQQAGAIQK--LNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKIL 191 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 ++ ++ G EY + +I ISRLR+ +E +P+ P+YIQTV G+GY F + Sbjct: 192 TKQQIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 137/229 (59%), Gaps = 9/229 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KILV++D+ + LL+ Y ++ F+V + N + L L+VLDLMLPG DGLS Sbjct: 4 KILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLS 63 Query: 66 ICRRLRSQ--SNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 + R L+ + +P++++TAK +E DRIVGLE+GADDYI KPFNP+ELLARI+A+LRR Sbjct: 64 VNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRT 123 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 P+Q + L++ E D + LT+ EF++L ALV + L R Sbjct: 124 ----EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQ 179 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 L++L G +Y +R++DV I RLR+ + + + +QTV +GY F Sbjct: 180 MLLDLVWGADYEGTDRTVDVHIRRLRKKLGD---YQDRVQTVKQIGYKF 225 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 +L+++DD L L+ Q ++V+ + ++ + L++LD+MLP + Sbjct: 2 HKPSVLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKMN 61 Query: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 G ICR +R++ MPIIM+TAKG+E D I GLE+GADDY+ KPF+ RELLA R Sbjct: 62 GYEICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLA-------R 114 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 A L V FG KL+L ++++ + + LT+ EF +L+ + P L+R Sbjct: 115 AAAFLRRRKGHAATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTR 174 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 D++++ G + +RS+D ++ LR +E +P P IQT+ +GY F Sbjct: 175 DQILDGVWGNDIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFE 225 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 7/229 (3%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL++DDD + ++ R LT +G++V ++ L+ + L++LD+M+P DGL Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+RLR +PI+MVT DR+ GLE GADDY+ KPF EL+AR++A+LRR + Sbjct: 64 VCKRLRKD-AGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 +E+ + F ++L TR+ FR + ++ EF +L + HP++ L+R+ L Sbjct: 123 -----KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELL 177 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 M+ G ++ ++V + LR +E PR I TV G GYV Sbjct: 178 MDRVWGFDFRGESNVLEVYVGYLRSKLEAQ-NEPRLIHTVRGAGYVLRE 225 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 4/233 (1%) Query: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 +YKIL+VDDD + L+ +L ++G++V+ N E+ + E F L+++D+M+P DG Sbjct: 2 SYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDG 61 Query: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 +R+R +N +PII +TAK + D+I G G DDYI KPF+ EL R+ A+L+R Sbjct: 62 FEAIKRIRRLTN-IPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRV 120 Query: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 G + E +I +LNL +++ ++ + LT EF +L L + Sbjct: 121 ---STGVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSS 177 Query: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 +L G+E+ + S+ I LR + + + +YI+TVWG+GY + Sbjct: 178 ELYERVWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 6/238 (2%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M++ +KILV +DD + + YL +GF V + + + + L+++DLM+P Sbjct: 1 MKD-FKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPR 59 Query: 61 EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL 120 G ++LR S +PII+++AK E+ D+++GL IGADDYI KPFNP EL+AR+ + L Sbjct: 60 LSGEEAIKKLRDIS-FVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNL 118 Query: 121 RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL 180 RR + A +I G KLN + +D+ + LTS E+ +L+ L+ +P + Sbjct: 119 RRYHSYDNLA---SSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVF 175 Query: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 S + + +++ V I R+R +E DP P YIQ WGLGY FV + + Sbjct: 176 SIESIYEHVWNEPAI-EAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKRR 232 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 147/234 (62%), Gaps = 4/234 (1%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 K+L+ DDD RL L++ Y +G++V N + L+ + +++LD+M+P DG Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +++R++S+ +P+IM+TAKG+++DRI+GLE+GADDY+ KPFNPRELLARI+A+LRR + Sbjct: 63 TLKQIRNKSS-VPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQ 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 E P+ + I L R ++ E E + LT+ E+ +L+ ++ P + L++ +L Sbjct: 122 EREDDPTAD---IDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQEL 178 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 A GR+ + +RS+D+ IS LR+ + I+TV G+GY+FV + A Sbjct: 179 SEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSNEQGA 232 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 132/228 (57%), Gaps = 6/228 (2%) Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 KIL+VDD+ + + ++ Y +QG+ V + +N + ++ +++LD+M+P DG Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGFQ 62 Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 +C+++R + PII ++A+ E+D+I GL +G DDYI KPF+ +EL AR++A LRR+ Sbjct: 63 VCQKIRDK-VSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 P + I+FGK L++ +R++ E+E + T+ EF +++ L HP + S++++ Sbjct: 122 I----PLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQI 177 Query: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 G + ++ I ++R + A +I TVWG+GY + Sbjct: 178 YEKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 3/229 (1%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 + +LVV+DD +R LL L G+ V S ++ L+VLD+MLP DG Sbjct: 11 HTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGF 70 Query: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 + R LR+Q P++ +TA+ DRI GL G DDY+ KPF+ +E+L R+RA+LRR Sbjct: 71 RLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAG 130 Query: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 AP + + + L+ T E+ P+ L+ EF +L ++HP L + + Sbjct: 131 APASTAPVRPP--LRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAE 188 Query: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 ++ ++S R +D + LRR + + P + TV G+GY Sbjct: 189 ILQRVWRYDFSGDTRIVDTYVKNLRRKL-DHGGAPALLHTVRGVGYCLR 236 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 132/245 (53%), Gaps = 16/245 (6%) Query: 1 MQEN--YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML 58 M + I+VVDD+ +R LL L GF+V + A+ + ++ + L+VLD+ML Sbjct: 6 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML 65 Query: 59 PGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRA 118 P DG ++ RR+R + P++ +TA+ + D+++GL +G DDY+ KPF+ E++ARIRA Sbjct: 66 PDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 125 Query: 119 VLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPRE 178 +LRR +++ +I G ++N + ++ R +P+ L+ E+ +L+ L+ + Sbjct: 126 ILRRTQ-----EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGR 180 Query: 179 PLSRDKLMNLARGREYSAMERSIDVQISRLRRM-----VEEDPAHPR----YIQTVWGLG 229 LS+ ++++ ++ ++ IS LR+ VE+ I+T G+G Sbjct: 181 VLSKAQILDHVWQYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIG 240 Query: 230 YVFVP 234 Y+ Sbjct: 241 YMIRA 245 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 10/224 (4%) Query: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 +L+V+D+ + L+ YL GF V + + R + VLD+ LPG G I Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 CRRLR + P+I +TA+ +EVDRIVGLE+GADDY+ KPF+PREL+AR+RAVLRR A Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130 Query: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 PG P G L+ R + +P+ LTS EF +L L++ P +R++L+ Sbjct: 131 PPGRPR------IVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELL 184 Query: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 G A R++DV ++++R + + I+T G+GY Sbjct: 185 AGVWGYAVPAGTRTVDVHVAQVRAKLGPES----VIRTHRGVGY 224 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 10/237 (4%) Query: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 KIL+++DD L +LL+ L ++GF + + L + L++LD+MLP DGL Sbjct: 7 KKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGL 66 Query: 65 SICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 IC+ +R + +P+I +TA+ E DRIVGLE+GA+DY+ KPF REL+ARI+ R Sbjct: 67 DICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR- 125 Query: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 + ++ G +L+ + ++ P+ LT+ EF +L+ L++ P SR Sbjct: 126 -------NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSR 178 Query: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA 239 ++L+N G++ + +R++DV + RLR+ VE+DPA P I +V G GY F P S A Sbjct: 179 EQLLNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEPRRSMA 235 >UniRef50_D2LY16 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillus RepID=D2LY16_BACS4 Length = 228 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 10/236 (4%) Query: 1 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG 60 M + VV+D+ +R L+E YL ++G+ V + + E+ + S ++LDLMLP Sbjct: 1 MLNQQLVQVVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPK 60 Query: 61 EDGLSICRRLR-SQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAV 119 G +CR +R + N + IIM+TAK +I GL IGADDY+ KPF+P EL+AR+ AV Sbjct: 61 LSGEEVCRWIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAV 120 Query: 120 LRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 LRR I+ + + +P+ LT EF +L + +P Sbjct: 121 LRRSGQFCQK--------ISLNGLIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIV 172 Query: 180 LSRDKLMNLAR-GREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 LSR++L+ + ++R+ID I +LR +E+ P+ P+ IQTV G+GY FV Sbjct: 173 LSREQLIQQIHPHTDVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRFVV 228 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.214 0.840 Lambda K H 0.267 0.0658 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,477,096,780 Number of Sequences: 3077464 Number of extensions: 178711223 Number of successful extensions: 522774 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 37017 Number of HSP's successfully gapped in prelim test: 14381 Number of HSP's that attempted gapping in prelim test: 412752 Number of HSP's gapped (non-prelim): 60631 length of query: 239 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 114 effective length of database: 655,713,356 effective search space: 74751322584 effective search space used: 74751322584 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 93 (39.7 bits)